Query 040894
Match_columns 169
No_of_seqs 129 out of 1271
Neff 11.1
Searched_HMMs 29240
Date Mon Mar 25 20:57:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040894.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040894hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3umf_A Adenylate kinase; rossm 100.0 9.2E-36 3.2E-40 199.4 19.4 168 1-169 37-208 (217)
2 3sr0_A Adenylate kinase; phosp 100.0 1.1E-34 3.8E-39 193.3 18.9 167 1-169 8-199 (206)
3 3gmt_A Adenylate kinase; ssgci 100.0 2.6E-34 8.9E-39 192.9 18.6 168 1-169 16-224 (230)
4 3tlx_A Adenylate kinase 2; str 100.0 4.8E-29 1.6E-33 170.7 19.3 168 1-168 37-237 (243)
5 3be4_A Adenylate kinase; malar 100.0 2.9E-28 1E-32 164.4 20.2 168 1-168 13-213 (217)
6 3dl0_A Adenylate kinase; phosp 100.0 2.2E-28 7.4E-33 164.9 19.0 168 1-168 8-208 (216)
7 3fb4_A Adenylate kinase; psych 100.0 4.9E-28 1.7E-32 163.1 19.8 168 1-168 8-208 (216)
8 1e4v_A Adenylate kinase; trans 100.0 5.8E-28 2E-32 162.6 18.7 167 1-168 8-209 (214)
9 1aky_A Adenylate kinase; ATP:A 100.0 1.8E-27 6.1E-32 160.8 20.6 168 1-168 12-213 (220)
10 1ak2_A Adenylate kinase isoenz 100.0 4.7E-27 1.6E-31 160.0 21.2 168 1-168 24-224 (233)
11 2xb4_A Adenylate kinase; ATP-b 100.0 2.5E-27 8.6E-32 160.4 19.3 168 1-168 8-218 (223)
12 2c95_A Adenylate kinase 1; tra 100.0 4.9E-27 1.7E-31 155.9 20.1 167 1-168 17-187 (196)
13 1qf9_A UMP/CMP kinase, protein 100.0 7.9E-27 2.7E-31 154.5 20.6 168 1-168 14-185 (194)
14 2bwj_A Adenylate kinase 5; pho 100.0 4.8E-27 1.6E-31 156.3 18.7 167 1-168 20-190 (199)
15 2cdn_A Adenylate kinase; phosp 100.0 1.5E-26 5.2E-31 154.2 20.2 164 1-168 28-195 (201)
16 1ukz_A Uridylate kinase; trans 100.0 6.2E-26 2.1E-30 151.5 21.2 167 1-168 23-195 (203)
17 1tev_A UMP-CMP kinase; ploop, 100.0 5.8E-26 2E-30 150.6 20.6 168 1-168 11-188 (196)
18 1zd8_A GTP:AMP phosphotransfer 99.9 8.2E-26 2.8E-30 153.4 19.8 165 1-168 15-208 (227)
19 3cm0_A Adenylate kinase; ATP-b 99.9 1.3E-25 4.4E-30 148.0 17.5 164 1-168 12-180 (186)
20 1zak_A Adenylate kinase; ATP:A 99.9 2.4E-25 8.1E-30 150.6 18.2 165 1-168 13-204 (222)
21 3lw7_A Adenylate kinase relate 99.9 4.9E-20 1.7E-24 120.0 17.0 156 1-168 9-170 (179)
22 2bbw_A Adenylate kinase 4, AK4 99.9 2.6E-19 8.8E-24 122.7 20.4 165 1-168 35-228 (246)
23 4hlc_A DTMP kinase, thymidylat 99.8 7.9E-20 2.7E-24 121.7 14.0 155 1-168 10-194 (205)
24 4edh_A DTMP kinase, thymidylat 99.8 3.8E-19 1.3E-23 119.1 11.2 154 1-168 14-200 (213)
25 3hjn_A DTMP kinase, thymidylat 99.8 4.7E-18 1.6E-22 112.6 15.9 150 1-168 8-185 (197)
26 3vaa_A Shikimate kinase, SK; s 99.8 8.1E-19 2.8E-23 116.6 11.9 148 1-168 33-189 (199)
27 2pbr_A DTMP kinase, thymidylat 99.8 9.2E-18 3.2E-22 110.9 16.4 149 1-168 8-185 (195)
28 2z0h_A DTMP kinase, thymidylat 99.8 5.8E-18 2E-22 112.1 15.2 151 1-168 8-185 (197)
29 3t61_A Gluconokinase; PSI-biol 99.8 5.2E-18 1.8E-22 113.0 14.7 145 1-168 26-173 (202)
30 3v9p_A DTMP kinase, thymidylat 99.8 4E-19 1.4E-23 119.8 9.3 154 1-168 33-220 (227)
31 4tmk_A Protein (thymidylate ki 99.8 6.8E-19 2.3E-23 117.7 9.8 155 1-168 11-200 (213)
32 3lv8_A DTMP kinase, thymidylat 99.8 9.2E-19 3.1E-23 118.6 8.8 157 1-168 35-222 (236)
33 3kb2_A SPBC2 prophage-derived 99.8 1.4E-17 4.7E-22 108.1 14.1 136 1-168 9-160 (173)
34 3tmk_A Thymidylate kinase; pho 99.8 5.8E-18 2E-22 113.3 11.7 156 1-168 13-196 (216)
35 4eaq_A DTMP kinase, thymidylat 99.8 6.8E-18 2.3E-22 114.4 12.0 153 1-168 34-218 (229)
36 3trf_A Shikimate kinase, SK; a 99.8 1.6E-17 5.4E-22 109.1 13.0 150 1-168 13-168 (185)
37 1e6c_A Shikimate kinase; phosp 99.8 2.7E-17 9.2E-22 106.8 12.2 149 1-168 10-164 (173)
38 1zuh_A Shikimate kinase; alpha 99.7 6.9E-18 2.4E-22 109.2 9.3 143 1-168 15-163 (168)
39 3ld9_A DTMP kinase, thymidylat 99.7 7.6E-18 2.6E-22 113.1 8.7 153 1-168 29-209 (223)
40 2iyv_A Shikimate kinase, SK; t 99.7 3.7E-17 1.3E-21 107.3 11.8 151 1-168 10-162 (184)
41 2pt5_A Shikimate kinase, SK; a 99.7 1E-17 3.5E-22 108.3 8.9 144 1-168 8-157 (168)
42 1nks_A Adenylate kinase; therm 99.7 2.3E-16 7.8E-21 104.1 15.3 156 1-168 9-189 (194)
43 4i1u_A Dephospho-COA kinase; s 99.7 6.9E-17 2.4E-21 107.2 12.5 151 1-168 17-195 (210)
44 1jjv_A Dephospho-COA kinase; P 99.7 3.5E-16 1.2E-20 104.3 15.5 150 1-168 10-190 (206)
45 1via_A Shikimate kinase; struc 99.7 2.6E-17 8.8E-22 107.2 9.3 144 1-168 12-160 (175)
46 2wwf_A Thymidilate kinase, put 99.7 6.6E-18 2.3E-22 113.1 6.5 153 1-168 18-193 (212)
47 1kht_A Adenylate kinase; phosp 99.7 9.2E-18 3.1E-22 110.7 6.8 157 1-168 11-187 (192)
48 1nn5_A Similar to deoxythymidy 99.7 5.7E-17 2E-21 108.7 10.4 155 1-168 17-194 (215)
49 2plr_A DTMP kinase, probable t 99.7 2.4E-16 8.3E-21 105.4 12.7 149 1-168 12-201 (213)
50 1ly1_A Polynucleotide kinase; 99.7 3.8E-16 1.3E-20 102.0 12.7 148 1-168 10-166 (181)
51 2rhm_A Putative kinase; P-loop 99.7 2.1E-16 7E-21 104.3 11.5 110 1-116 13-125 (193)
52 2v54_A DTMP kinase, thymidylat 99.7 2.3E-16 7.8E-21 105.0 10.8 149 1-168 12-184 (204)
53 1knq_A Gluconate kinase; ALFA/ 99.7 1.6E-14 5.5E-19 93.9 18.1 146 1-168 16-167 (175)
54 3nwj_A ATSK2; P loop, shikimat 99.7 6.5E-16 2.2E-20 105.7 11.8 152 1-168 56-230 (250)
55 4eun_A Thermoresistant glucoki 99.7 6.8E-15 2.3E-19 97.7 16.3 144 1-168 37-187 (200)
56 1vht_A Dephospho-COA kinase; s 99.7 2.5E-15 8.5E-20 101.1 13.7 150 1-168 12-188 (218)
57 2if2_A Dephospho-COA kinase; a 99.7 1.4E-15 4.7E-20 101.3 11.3 149 1-168 9-185 (204)
58 3ake_A Cytidylate kinase; CMP 99.6 1.7E-14 5.8E-19 96.1 15.5 152 1-168 10-202 (208)
59 1cke_A CK, MSSA, protein (cyti 99.6 1E-14 3.5E-19 98.6 14.4 153 1-168 13-216 (227)
60 3a4m_A L-seryl-tRNA(SEC) kinas 99.6 2.8E-15 9.7E-20 103.4 11.1 147 1-168 12-167 (260)
61 1ltq_A Polynucleotide kinase; 99.6 4.7E-16 1.6E-20 109.4 6.7 160 1-165 10-174 (301)
62 2f6r_A COA synthase, bifunctio 99.6 1.4E-14 4.9E-19 100.9 14.0 150 1-168 83-262 (281)
63 2jaq_A Deoxyguanosine kinase; 99.6 6.1E-15 2.1E-19 98.0 11.4 70 94-168 123-194 (205)
64 1kag_A SKI, shikimate kinase I 99.6 5.4E-16 1.8E-20 100.7 6.1 146 1-168 12-166 (173)
65 1y63_A LMAJ004144AAA protein; 99.6 2.2E-14 7.5E-19 94.0 12.6 143 1-167 18-167 (184)
66 2vli_A Antibiotic resistance p 99.6 2.7E-14 9.2E-19 93.4 12.2 143 1-168 13-165 (183)
67 3iij_A Coilin-interacting nucl 99.6 4.1E-15 1.4E-19 97.1 7.9 144 1-166 19-162 (180)
68 3fdi_A Uncharacterized protein 99.6 1.8E-13 6E-18 90.9 14.9 151 1-168 14-192 (201)
69 2grj_A Dephospho-COA kinase; T 99.6 1.2E-13 4.2E-18 90.9 12.8 135 1-168 20-180 (192)
70 1uj2_A Uridine-cytidine kinase 99.6 8.2E-15 2.8E-19 100.7 7.3 151 1-168 30-227 (252)
71 4e22_A Cytidylate kinase; P-lo 99.6 6.3E-14 2.1E-18 96.2 11.4 31 1-31 35-65 (252)
72 2qt1_A Nicotinamide riboside k 99.5 7.9E-15 2.7E-19 97.9 6.2 151 1-168 29-199 (207)
73 1qhx_A CPT, protein (chloramph 99.5 1.6E-12 5.3E-17 84.6 15.4 153 1-168 11-172 (178)
74 3r20_A Cytidylate kinase; stru 99.5 9.1E-13 3.1E-17 89.0 14.4 156 1-168 17-221 (233)
75 1uf9_A TT1252 protein; P-loop, 99.5 4E-13 1.4E-17 89.1 12.5 147 1-168 16-187 (203)
76 2h92_A Cytidylate kinase; ross 99.5 4E-13 1.4E-17 90.3 11.1 154 1-168 11-211 (219)
77 3hdt_A Putative kinase; struct 99.5 3.2E-12 1.1E-16 86.0 15.1 155 1-168 22-212 (223)
78 1q3t_A Cytidylate kinase; nucl 99.5 1.1E-12 3.7E-17 89.3 12.4 156 1-168 24-228 (236)
79 1m7g_A Adenylylsulfate kinase; 99.5 3.8E-13 1.3E-17 90.0 9.1 146 1-168 33-196 (211)
80 2yvu_A Probable adenylyl-sulfa 99.5 2E-12 6.9E-17 84.7 12.0 98 1-115 21-132 (186)
81 2qor_A Guanylate kinase; phosp 99.4 1.5E-12 5E-17 86.7 11.0 94 60-168 95-190 (204)
82 1p5z_B DCK, deoxycytidine kina 99.4 8.4E-14 2.9E-18 96.2 4.7 72 94-168 173-252 (263)
83 2pez_A Bifunctional 3'-phospho 99.4 3.5E-12 1.2E-16 83.1 11.8 103 1-116 13-125 (179)
84 2vp4_A Deoxynucleoside kinase; 99.4 1.7E-12 6E-17 87.9 8.8 71 93-169 144-219 (230)
85 3zvl_A Bifunctional polynucleo 99.4 1.6E-11 5.4E-16 90.0 13.8 90 1-116 266-357 (416)
86 1gvn_B Zeta; postsegregational 99.4 1.4E-11 4.8E-16 86.0 12.7 110 1-116 41-162 (287)
87 1gtv_A TMK, thymidylate kinase 99.3 3.2E-14 1.1E-18 95.2 -3.8 71 94-169 131-208 (214)
88 2ocp_A DGK, deoxyguanosine kin 99.3 1.7E-11 5.9E-16 83.5 8.6 72 94-168 148-227 (241)
89 3uie_A Adenylyl-sulfate kinase 99.3 1.1E-10 3.8E-15 77.3 11.8 101 1-113 33-140 (200)
90 1x6v_B Bifunctional 3'-phospho 99.3 7.2E-11 2.5E-15 89.9 12.0 104 1-115 60-171 (630)
91 2p5t_B PEZT; postsegregational 99.2 1.5E-11 5.1E-16 84.4 6.4 109 1-116 40-157 (253)
92 2gks_A Bifunctional SAT/APS ki 99.2 6.1E-11 2.1E-15 89.4 9.3 148 1-168 380-534 (546)
93 1p6x_A Thymidine kinase; P-loo 99.1 8.2E-11 2.8E-15 83.3 6.2 44 94-139 156-201 (334)
94 3tr0_A Guanylate kinase, GMP k 99.1 1.3E-09 4.6E-14 72.1 11.3 92 60-168 89-180 (205)
95 1ex7_A Guanylate kinase; subst 99.1 1.1E-10 3.6E-15 76.3 4.3 152 1-168 9-178 (186)
96 1m8p_A Sulfate adenylyltransfe 99.0 1.6E-09 5.6E-14 82.1 10.1 104 1-114 404-514 (573)
97 3asz_A Uridine kinase; cytidin 99.0 1.3E-09 4.3E-14 72.7 8.1 29 1-29 14-44 (211)
98 1a7j_A Phosphoribulokinase; tr 99.0 1.2E-10 4.1E-15 81.4 2.5 29 1-29 13-46 (290)
99 2axn_A 6-phosphofructo-2-kinas 99.0 2.8E-09 9.7E-14 80.1 9.1 137 1-142 43-201 (520)
100 3tau_A Guanylate kinase, GMP k 99.0 4.3E-10 1.5E-14 75.0 3.9 92 59-168 90-182 (208)
101 2ze6_A Isopentenyl transferase 98.9 1E-09 3.5E-14 75.3 5.6 113 1-116 9-138 (253)
102 2bdt_A BH3686; alpha-beta prot 98.9 4.6E-09 1.6E-13 68.8 8.3 104 1-116 10-122 (189)
103 2j41_A Guanylate kinase; GMP, 98.9 7.1E-10 2.4E-14 73.6 3.5 90 60-168 89-180 (207)
104 1e2k_A Thymidine kinase; trans 98.9 2.6E-08 9E-13 70.5 10.8 44 94-139 153-198 (331)
105 2jeo_A Uridine-cytidine kinase 98.9 1.7E-08 5.7E-13 68.9 9.2 87 70-168 134-229 (245)
106 1zp6_A Hypothetical protein AT 98.9 1.4E-08 4.7E-13 66.5 8.3 147 1-168 17-169 (191)
107 1rz3_A Hypothetical protein rb 98.8 6.1E-09 2.1E-13 69.0 6.4 40 70-116 125-164 (201)
108 1of1_A Thymidine kinase; trans 98.8 5E-08 1.7E-12 70.0 11.4 44 94-139 198-243 (376)
109 3a00_A Guanylate kinase, GMP k 98.8 2E-09 6.8E-14 70.5 3.1 94 59-168 83-178 (186)
110 3cr8_A Sulfate adenylyltranfer 98.8 2.5E-08 8.6E-13 75.3 8.9 29 1-29 377-411 (552)
111 1osn_A Thymidine kinase, VZV-T 98.8 3.3E-08 1.1E-12 70.2 8.7 45 93-139 164-210 (341)
112 3ch4_B Pmkase, phosphomevalona 98.7 2E-07 6.7E-12 61.3 10.0 148 1-168 19-183 (202)
113 3c8u_A Fructokinase; YP_612366 98.7 2E-08 6.9E-13 66.8 5.0 44 71-116 125-168 (208)
114 1bif_A 6-phosphofructo-2-kinas 98.7 6E-07 2E-11 66.8 13.0 111 1-116 47-172 (469)
115 3a8t_A Adenylate isopentenyltr 98.6 4.5E-09 1.5E-13 74.4 0.5 27 1-27 48-74 (339)
116 3lnc_A Guanylate kinase, GMP k 98.6 3.1E-07 1.1E-11 62.0 9.1 60 98-168 143-202 (231)
117 3tqc_A Pantothenate kinase; bi 98.6 1.5E-08 5.2E-13 71.5 2.7 22 95-116 226-247 (321)
118 1sq5_A Pantothenate kinase; P- 98.6 1.3E-07 4.4E-12 66.6 7.0 22 95-116 214-235 (308)
119 3czq_A Putative polyphosphate 98.5 4.8E-08 1.6E-12 68.0 3.1 69 93-161 188-262 (304)
120 1s96_A Guanylate kinase, GMP k 98.3 4.3E-05 1.5E-09 51.1 14.1 92 60-168 100-191 (219)
121 1kgd_A CASK, peripheral plasma 98.3 9.5E-07 3.3E-11 57.3 5.2 18 1-18 13-30 (180)
122 4gp7_A Metallophosphoesterase; 98.2 6.9E-05 2.4E-09 48.1 12.9 118 1-138 17-141 (171)
123 3ney_A 55 kDa erythrocyte memb 98.2 2.3E-05 7.7E-10 51.5 9.2 18 1-18 27-44 (197)
124 3czp_A Putative polyphosphate 98.1 3.2E-06 1.1E-10 63.1 5.1 66 92-159 144-217 (500)
125 3aez_A Pantothenate kinase; tr 98.1 1.1E-05 3.8E-10 56.8 7.2 22 95-116 217-238 (312)
126 1lvg_A Guanylate kinase, GMP k 98.1 4.8E-05 1.6E-09 50.0 9.6 63 98-168 118-181 (198)
127 3czp_A Putative polyphosphate 98.0 6.2E-06 2.1E-10 61.5 5.2 66 92-159 401-474 (500)
128 3crm_A TRNA delta(2)-isopenten 98.0 1.5E-06 5.3E-11 61.3 1.3 27 1-27 13-39 (323)
129 3d3q_A TRNA delta(2)-isopenten 97.9 1.8E-06 6.3E-11 61.3 1.0 27 1-27 15-41 (340)
130 3rhf_A Putative polyphosphate 97.8 9.5E-06 3.3E-10 55.9 2.6 137 2-160 84-250 (289)
131 1dek_A Deoxynucleoside monopho 97.7 2.4E-05 8.2E-10 53.1 3.5 32 1-32 9-40 (241)
132 3exa_A TRNA delta(2)-isopenten 97.7 8.6E-06 2.9E-10 57.2 1.3 27 1-27 11-37 (322)
133 3foz_A TRNA delta(2)-isopenten 97.7 1.4E-05 4.9E-10 55.9 2.0 26 1-26 18-43 (316)
134 3t15_A Ribulose bisphosphate c 97.6 2.3E-05 7.9E-10 54.8 2.4 24 1-24 44-67 (293)
135 2ga8_A Hypothetical 39.9 kDa p 97.6 4.2E-06 1.4E-10 59.7 -1.4 21 1-21 32-52 (359)
136 4b4t_K 26S protease regulatory 97.5 3.9E-05 1.3E-09 56.3 2.6 24 1-24 214-237 (428)
137 1g8f_A Sulfate adenylyltransfe 97.5 3.7E-05 1.3E-09 57.6 2.4 26 1-26 403-435 (511)
138 3eph_A TRNA isopentenyltransfe 97.5 3.6E-05 1.2E-09 55.9 2.2 26 1-26 10-35 (409)
139 1lv7_A FTSH; alpha/beta domain 97.5 5E-05 1.7E-09 51.9 2.7 23 1-23 53-75 (257)
140 4b4t_M 26S protease regulatory 97.5 4.6E-05 1.6E-09 56.0 2.6 24 1-24 223-246 (434)
141 4b4t_J 26S protease regulatory 97.5 4.8E-05 1.7E-09 55.2 2.5 24 1-24 190-213 (405)
142 4b4t_L 26S protease subunit RP 97.5 5E-05 1.7E-09 55.8 2.6 24 1-24 223-246 (437)
143 3ec2_A DNA replication protein 97.4 0.00016 5.6E-09 46.5 4.4 30 1-30 46-81 (180)
144 2x8a_A Nuclear valosin-contain 97.4 7E-05 2.4E-09 51.8 2.5 22 1-22 52-73 (274)
145 2qz4_A Paraplegin; AAA+, SPG7, 97.4 7.8E-05 2.7E-09 50.9 2.7 23 1-23 47-69 (262)
146 1kjw_A Postsynaptic density pr 97.4 0.00015 5E-09 50.7 4.1 92 58-168 184-275 (295)
147 3hws_A ATP-dependent CLP prote 97.4 8.1E-05 2.8E-09 53.5 2.6 24 1-24 59-82 (363)
148 4b4t_H 26S protease regulatory 97.4 8.4E-05 2.9E-09 54.8 2.6 24 1-24 251-274 (467)
149 2r62_A Cell division protease 97.4 8E-05 2.7E-09 51.1 2.4 23 1-23 52-74 (268)
150 3cf0_A Transitional endoplasmi 97.3 8.8E-05 3E-09 52.0 2.5 29 1-29 57-87 (301)
151 1g41_A Heat shock protein HSLU 97.3 9.1E-05 3.1E-09 54.6 2.6 25 1-25 58-82 (444)
152 1jbk_A CLPB protein; beta barr 97.3 0.00098 3.3E-08 42.8 7.4 17 1-17 51-67 (195)
153 3b9p_A CG5977-PA, isoform A; A 97.3 8.7E-05 3E-09 51.7 2.4 23 1-23 62-84 (297)
154 3h4m_A Proteasome-activating n 97.3 0.00012 3.9E-09 50.8 2.9 23 1-23 59-81 (285)
155 2qmh_A HPR kinase/phosphorylas 97.3 7.5E-05 2.6E-09 49.0 1.8 25 1-26 42-66 (205)
156 4b4t_I 26S protease regulatory 97.3 9.4E-05 3.2E-09 54.1 2.5 24 1-24 224-247 (437)
157 1in4_A RUVB, holliday junction 97.3 0.00013 4.4E-09 51.9 3.0 21 1-21 59-79 (334)
158 1ye8_A Protein THEP1, hypothet 97.3 0.00011 3.7E-09 47.6 2.3 19 1-19 8-26 (178)
159 1d2n_A N-ethylmaleimide-sensit 97.3 0.00016 5.6E-09 49.7 3.1 24 1-24 72-95 (272)
160 1ixz_A ATP-dependent metallopr 97.2 0.00014 4.9E-09 49.5 2.6 23 1-23 57-79 (254)
161 3eie_A Vacuolar protein sortin 97.2 0.00015 5E-09 51.3 2.5 24 1-24 59-82 (322)
162 1um8_A ATP-dependent CLP prote 97.2 0.00016 5.4E-09 52.2 2.6 23 1-23 80-102 (376)
163 1ofh_A ATP-dependent HSL prote 97.2 0.00017 6E-09 50.3 2.7 23 1-23 58-80 (310)
164 2qp9_X Vacuolar protein sortin 97.1 0.00021 7E-09 51.3 2.5 24 1-24 92-115 (355)
165 1iy2_A ATP-dependent metallopr 97.1 0.00023 8E-09 49.2 2.6 23 1-23 81-103 (278)
166 1xwi_A SKD1 protein; VPS4B, AA 97.1 0.00024 8.1E-09 50.3 2.4 22 1-22 53-75 (322)
167 2c9o_A RUVB-like 1; hexameric 97.1 0.00027 9.2E-09 52.4 2.7 23 1-23 71-95 (456)
168 1odf_A YGR205W, hypothetical 3 97.1 0.00027 9.1E-09 49.3 2.5 29 1-29 39-75 (290)
169 2p65_A Hypothetical protein PF 97.1 0.00021 7.2E-09 45.9 1.8 17 1-17 51-67 (187)
170 3d8b_A Fidgetin-like protein 1 97.0 0.00029 9.8E-09 50.6 2.5 23 1-23 125-147 (357)
171 1sxj_A Activator 1 95 kDa subu 97.0 0.00033 1.1E-08 52.8 2.5 24 1-24 85-108 (516)
172 1znw_A Guanylate kinase, GMP k 97.0 0.0003 1E-08 46.5 2.0 18 1-18 28-45 (207)
173 1tue_A Replication protein E1; 97.0 0.00034 1.2E-08 46.2 2.1 23 1-23 66-88 (212)
174 1z6g_A Guanylate kinase; struc 97.0 0.00034 1.2E-08 46.6 2.3 17 1-17 31-47 (218)
175 1svm_A Large T antigen; AAA+ f 97.0 0.00048 1.6E-08 49.8 3.1 24 93-116 298-321 (377)
176 2ce7_A Cell division protein F 96.9 0.00051 1.8E-08 51.2 3.2 24 1-24 57-80 (476)
177 3pfi_A Holliday junction ATP-d 96.9 0.00052 1.8E-08 48.7 3.1 23 1-23 63-85 (338)
178 2kjq_A DNAA-related protein; s 96.9 0.00036 1.2E-08 43.7 2.0 17 1-17 44-60 (149)
179 3vfd_A Spastin; ATPase, microt 96.9 0.00043 1.5E-08 50.2 2.5 23 1-23 156-178 (389)
180 3bos_A Putative DNA replicatio 96.9 0.00047 1.6E-08 46.1 2.4 18 1-18 60-77 (242)
181 3cf2_A TER ATPase, transitiona 96.9 0.00034 1.1E-08 55.3 1.9 24 1-24 246-269 (806)
182 1l8q_A Chromosomal replication 96.9 0.00062 2.1E-08 48.1 3.1 29 1-29 45-78 (324)
183 1xjc_A MOBB protein homolog; s 96.9 0.00054 1.8E-08 43.8 2.5 17 1-17 12-28 (169)
184 2xkx_A Disks large homolog 4; 96.9 0.011 3.6E-07 46.5 10.1 92 58-168 610-701 (721)
185 3cf2_A TER ATPase, transitiona 96.9 0.0027 9.3E-08 50.2 6.8 24 1-24 519-542 (806)
186 3tvt_A Disks large 1 tumor sup 96.9 0.029 9.9E-07 39.1 11.2 91 58-168 179-270 (292)
187 1htw_A HI0065; nucleotide-bind 96.9 0.00055 1.9E-08 43.3 2.4 17 1-17 41-57 (158)
188 3u61_B DNA polymerase accessor 96.8 0.00041 1.4E-08 48.9 2.0 24 1-24 56-79 (324)
189 3pvs_A Replication-associated 96.8 0.00064 2.2E-08 50.3 3.0 23 1-23 58-80 (447)
190 3n70_A Transport activator; si 96.8 0.00053 1.8E-08 42.6 2.2 17 1-17 32-48 (145)
191 2w58_A DNAI, primosome compone 96.8 0.00063 2.2E-08 44.5 2.4 30 1-30 62-96 (202)
192 4a74_A DNA repair and recombin 96.8 0.00051 1.8E-08 45.8 2.0 17 1-17 33-49 (231)
193 2ehv_A Hypothetical protein PH 96.8 0.00053 1.8E-08 46.3 2.1 14 1-14 38-51 (251)
194 1hqc_A RUVB; extended AAA-ATPa 96.8 0.00073 2.5E-08 47.5 2.9 22 1-22 46-67 (324)
195 2i3b_A HCR-ntpase, human cance 96.8 0.00068 2.3E-08 44.2 2.5 17 1-17 9-25 (189)
196 1c9k_A COBU, adenosylcobinamid 96.8 0.00061 2.1E-08 44.0 2.1 20 1-21 7-26 (180)
197 2onk_A Molybdate/tungstate ABC 96.8 0.00059 2E-08 46.2 2.1 17 1-17 32-48 (240)
198 3tif_A Uncharacterized ABC tra 96.7 0.00047 1.6E-08 46.6 1.5 17 1-17 39-55 (235)
199 2zan_A Vacuolar protein sortin 96.7 0.00063 2.2E-08 50.3 2.3 28 1-28 175-205 (444)
200 2dhr_A FTSH; AAA+ protein, hex 96.7 0.00069 2.4E-08 50.8 2.5 23 1-23 72-94 (499)
201 3syl_A Protein CBBX; photosynt 96.7 0.00072 2.5E-08 47.3 2.5 17 1-17 75-91 (309)
202 2r44_A Uncharacterized protein 96.7 0.00061 2.1E-08 48.2 2.1 22 1-22 54-75 (331)
203 2pcj_A ABC transporter, lipopr 96.7 0.00051 1.7E-08 46.1 1.6 17 1-17 38-54 (224)
204 3b85_A Phosphate starvation-in 96.7 0.00062 2.1E-08 45.1 1.9 16 1-16 30-45 (208)
205 3uk6_A RUVB-like 2; hexameric 96.6 0.00093 3.2E-08 47.9 2.6 19 1-19 78-96 (368)
206 1njg_A DNA polymerase III subu 96.6 0.00093 3.2E-08 44.5 2.4 19 1-19 53-71 (250)
207 1np6_A Molybdopterin-guanine d 96.6 0.001 3.5E-08 42.8 2.5 17 1-17 14-30 (174)
208 3tqf_A HPR(Ser) kinase; transf 96.6 0.001 3.5E-08 42.6 2.3 24 1-25 24-47 (181)
209 2chg_A Replication factor C sm 96.6 0.001 3.5E-08 43.8 2.4 17 1-17 46-62 (226)
210 2f1r_A Molybdopterin-guanine d 96.6 0.00046 1.6E-08 44.3 0.7 17 1-17 10-26 (171)
211 2eyu_A Twitching motility prot 96.6 0.001 3.6E-08 45.6 2.4 17 1-17 33-49 (261)
212 4fcw_A Chaperone protein CLPB; 96.6 0.001 3.5E-08 46.5 2.4 17 1-17 55-71 (311)
213 3m6a_A ATP-dependent protease 96.6 0.0011 3.8E-08 50.3 2.7 21 1-21 116-136 (543)
214 4g1u_C Hemin import ATP-bindin 96.6 0.00072 2.5E-08 46.6 1.6 17 1-17 45-61 (266)
215 3hu3_A Transitional endoplasmi 96.6 0.00093 3.2E-08 50.0 2.3 24 1-24 246-269 (489)
216 2w0m_A SSO2452; RECA, SSPF, un 96.6 0.0011 3.8E-08 44.2 2.4 17 1-17 31-47 (235)
217 3gfo_A Cobalt import ATP-bindi 96.6 0.00073 2.5E-08 46.7 1.6 17 1-17 42-58 (275)
218 2v1u_A Cell division control p 96.6 0.00089 3.1E-08 48.1 2.1 17 1-17 52-68 (387)
219 1sgw_A Putative ABC transporte 96.6 0.00076 2.6E-08 44.9 1.6 17 1-17 43-59 (214)
220 2cbz_A Multidrug resistance-as 96.6 0.00074 2.5E-08 45.6 1.5 17 1-17 39-55 (237)
221 1b0u_A Histidine permease; ABC 96.5 0.00077 2.6E-08 46.3 1.6 17 1-17 40-56 (262)
222 1lw7_A Transcriptional regulat 96.5 0.00093 3.2E-08 48.1 2.1 20 1-20 178-197 (365)
223 3pxg_A Negative regulator of g 96.5 0.0013 4.4E-08 49.0 2.8 17 1-17 209-225 (468)
224 1sxj_C Activator 1 40 kDa subu 96.5 0.0011 3.8E-08 47.1 2.4 18 1-18 54-71 (340)
225 2v9p_A Replication protein E1; 96.5 0.0011 3.9E-08 46.4 2.4 18 1-18 134-151 (305)
226 2d2e_A SUFC protein; ABC-ATPas 96.5 0.001 3.4E-08 45.4 2.0 16 1-16 37-52 (250)
227 2qby_B CDC6 homolog 3, cell di 96.5 0.0012 4.2E-08 47.4 2.6 17 1-17 53-69 (384)
228 1ji0_A ABC transporter; ATP bi 96.5 0.00082 2.8E-08 45.5 1.5 17 1-17 40-56 (240)
229 1g6h_A High-affinity branched- 96.5 0.00082 2.8E-08 46.0 1.5 17 1-17 41-57 (257)
230 1mv5_A LMRA, multidrug resista 96.5 0.00086 2.9E-08 45.5 1.6 17 1-17 36-52 (243)
231 2olj_A Amino acid ABC transpor 96.5 0.00087 3E-08 46.1 1.6 17 1-17 58-74 (263)
232 1rj9_A FTSY, signal recognitio 96.5 0.0013 4.5E-08 46.1 2.4 17 1-17 110-126 (304)
233 2ff7_A Alpha-hemolysin translo 96.5 0.0009 3.1E-08 45.5 1.5 17 1-17 43-59 (247)
234 1vpl_A ABC transporter, ATP-bi 96.5 0.00092 3.2E-08 45.7 1.6 17 1-17 49-65 (256)
235 3fvq_A Fe(3+) IONS import ATP- 96.5 0.0011 3.8E-08 47.5 2.0 17 1-17 38-54 (359)
236 3co5_A Putative two-component 96.5 0.0003 1E-08 43.6 -0.8 18 1-18 35-52 (143)
237 2cvh_A DNA repair and recombin 96.5 0.0012 4E-08 43.7 2.0 18 1-18 28-45 (220)
238 2qby_A CDC6 homolog 1, cell di 96.5 0.0017 5.9E-08 46.5 3.1 17 1-17 53-69 (386)
239 2zu0_C Probable ATP-dependent 96.5 0.0012 4E-08 45.5 2.1 16 1-16 54-69 (267)
240 2pze_A Cystic fibrosis transme 96.5 0.00097 3.3E-08 44.8 1.6 17 1-17 42-58 (229)
241 2qi9_C Vitamin B12 import ATP- 96.4 0.001 3.4E-08 45.4 1.6 17 1-17 34-50 (249)
242 1ypw_A Transitional endoplasmi 96.4 0.0014 4.6E-08 52.1 2.5 23 1-23 519-541 (806)
243 1ypw_A Transitional endoplasmi 96.4 0.0013 4.3E-08 52.3 2.2 24 1-24 246-269 (806)
244 1z47_A CYSA, putative ABC-tran 96.4 0.0013 4.4E-08 47.2 2.0 17 1-17 49-65 (355)
245 2ihy_A ABC transporter, ATP-bi 96.4 0.0011 3.7E-08 46.0 1.6 17 1-17 55-71 (279)
246 2ixe_A Antigen peptide transpo 96.4 0.0011 3.6E-08 45.8 1.5 17 1-17 53-69 (271)
247 3b9q_A Chloroplast SRP recepto 96.4 0.0016 5.5E-08 45.6 2.5 17 1-17 108-124 (302)
248 2ghi_A Transport protein; mult 96.4 0.0011 3.7E-08 45.5 1.5 17 1-17 54-70 (260)
249 2yyz_A Sugar ABC transporter, 96.4 0.0013 4.6E-08 47.2 2.0 17 1-17 37-53 (359)
250 2z4s_A Chromosomal replication 96.4 0.002 6.8E-08 47.6 3.0 29 1-29 138-173 (440)
251 3rlf_A Maltose/maltodextrin im 96.4 0.0014 4.8E-08 47.4 2.1 17 1-17 37-53 (381)
252 2nq2_C Hypothetical ABC transp 96.4 0.0011 3.9E-08 45.2 1.5 17 1-17 39-55 (253)
253 2it1_A 362AA long hypothetical 96.4 0.0014 4.9E-08 47.0 2.1 17 1-17 37-53 (362)
254 1fnn_A CDC6P, cell division co 96.4 0.0018 6.2E-08 46.6 2.6 17 1-17 52-68 (389)
255 2yz2_A Putative ABC transporte 96.4 0.0012 3.9E-08 45.5 1.5 17 1-17 41-57 (266)
256 1v43_A Sugar-binding transport 96.4 0.0015 5E-08 47.2 2.1 17 1-17 45-61 (372)
257 1n0w_A DNA repair protein RAD5 96.4 0.0015 5.2E-08 43.8 2.1 16 1-16 32-47 (243)
258 1sxj_D Activator 1 41 kDa subu 96.3 0.0018 6.1E-08 46.0 2.4 18 1-18 66-83 (353)
259 2pjz_A Hypothetical protein ST 96.3 0.0013 4.3E-08 45.3 1.6 16 1-16 38-53 (263)
260 1g29_1 MALK, maltose transport 96.3 0.0015 5.2E-08 47.1 2.0 17 1-17 37-53 (372)
261 3e70_C DPA, signal recognition 96.3 0.002 6.8E-08 45.7 2.5 17 1-17 137-153 (328)
262 1cr0_A DNA primase/helicase; R 96.3 0.002 7E-08 44.8 2.4 17 1-17 43-59 (296)
263 1sxj_E Activator 1 40 kDa subu 96.3 0.0016 5.4E-08 46.4 1.9 17 1-17 44-60 (354)
264 1vma_A Cell division protein F 96.3 0.0022 7.5E-08 45.0 2.5 17 1-17 112-128 (306)
265 3tui_C Methionine import ATP-b 96.2 0.0019 6.3E-08 46.5 2.1 17 1-17 62-78 (366)
266 3sop_A Neuronal-specific septi 96.2 0.0018 6.2E-08 44.6 2.0 17 1-17 10-26 (270)
267 1g8p_A Magnesium-chelatase 38 96.2 0.0014 4.8E-08 46.6 1.4 18 1-18 53-70 (350)
268 2orw_A Thymidine kinase; TMTK, 96.2 0.0025 8.4E-08 41.3 2.4 17 1-17 11-27 (184)
269 3pxi_A Negative regulator of g 96.2 0.0024 8.4E-08 50.3 2.8 17 1-17 209-225 (758)
270 3d31_A Sulfate/molybdate ABC t 96.2 0.0012 4.2E-08 47.1 1.0 17 1-17 34-50 (348)
271 1jr3_A DNA polymerase III subu 96.2 0.0027 9.2E-08 45.4 2.7 19 1-19 46-64 (373)
272 2og2_A Putative signal recogni 96.1 0.0026 9E-08 45.6 2.5 17 1-17 165-181 (359)
273 2dr3_A UPF0273 protein PH0284; 96.1 0.0028 9.7E-08 42.6 2.5 17 1-17 31-47 (247)
274 2px0_A Flagellar biosynthesis 96.1 0.0028 9.4E-08 44.3 2.4 17 1-17 113-129 (296)
275 3gd7_A Fusion complex of cysti 96.1 0.0024 8.1E-08 46.4 2.0 16 1-16 55-70 (390)
276 1nlf_A Regulatory protein REPA 96.1 0.0025 8.6E-08 44.0 2.0 17 1-17 38-54 (279)
277 2ewv_A Twitching motility prot 96.1 0.0029 9.8E-08 45.7 2.4 17 1-17 144-160 (372)
278 2qgz_A Helicase loader, putati 96.1 0.003 1E-07 44.4 2.4 31 1-31 160-196 (308)
279 1iqp_A RFCS; clamp loader, ext 96.1 0.0031 1.1E-07 44.2 2.5 17 1-17 54-70 (327)
280 2bjv_A PSP operon transcriptio 96.1 0.0027 9.1E-08 43.4 2.1 18 1-18 37-54 (265)
281 2bbs_A Cystic fibrosis transme 96.0 0.0021 7.3E-08 44.8 1.5 17 1-17 72-88 (290)
282 3jvv_A Twitching mobility prot 96.0 0.0032 1.1E-07 45.2 2.4 17 1-17 131-147 (356)
283 2gza_A Type IV secretion syste 96.0 0.0023 8E-08 46.0 1.7 18 1-18 183-200 (361)
284 2qen_A Walker-type ATPase; unk 96.0 0.0038 1.3E-07 44.1 2.8 25 1-25 39-63 (350)
285 1oxx_K GLCV, glucose, ABC tran 96.0 0.0013 4.4E-08 47.2 0.3 17 1-17 39-55 (353)
286 3te6_A Regulatory protein SIR3 96.0 0.0022 7.6E-08 45.2 1.4 17 1-17 53-69 (318)
287 1r6b_X CLPA protein; AAA+, N-t 95.9 0.0036 1.2E-07 49.4 2.6 22 1-22 496-517 (758)
288 2qm8_A GTPase/ATPase; G protei 95.9 0.0038 1.3E-07 44.4 2.5 17 1-17 63-79 (337)
289 2yhs_A FTSY, cell division pro 95.9 0.0038 1.3E-07 46.6 2.5 17 1-17 301-317 (503)
290 1oix_A RAS-related protein RAB 95.9 0.0041 1.4E-07 40.3 2.3 16 1-16 37-52 (191)
291 2chq_A Replication factor C sm 95.9 0.0041 1.4E-07 43.4 2.4 17 1-17 46-62 (319)
292 3nh6_A ATP-binding cassette SU 95.8 0.0017 6E-08 45.5 0.4 17 1-17 88-104 (306)
293 1pzn_A RAD51, DNA repair and r 95.8 0.0036 1.2E-07 44.8 2.0 17 1-17 139-155 (349)
294 2pt7_A CAG-ALFA; ATPase, prote 95.8 0.0026 8.8E-08 45.2 1.3 18 1-18 179-196 (330)
295 2npi_A Protein CLP1; CLP1-PCF1 95.8 0.0037 1.3E-07 46.4 2.0 17 1-17 146-162 (460)
296 2yv5_A YJEQ protein; hydrolase 95.8 0.004 1.4E-07 43.6 2.0 16 1-17 173-188 (302)
297 1sxj_B Activator 1 37 kDa subu 95.8 0.0048 1.6E-07 43.2 2.4 17 1-17 50-66 (323)
298 1qvr_A CLPB protein; coiled co 95.8 0.0047 1.6E-07 49.4 2.6 17 1-17 199-215 (854)
299 3kl4_A SRP54, signal recogniti 95.8 0.0048 1.6E-07 45.4 2.5 17 1-17 105-121 (433)
300 1p9r_A General secretion pathw 95.7 0.0052 1.8E-07 45.1 2.6 18 1-18 175-192 (418)
301 2b8t_A Thymidine kinase; deoxy 95.7 0.0054 1.9E-07 41.0 2.4 17 1-17 20-36 (223)
302 3kta_A Chromosome segregation 95.7 0.0063 2.1E-07 39.0 2.6 18 1-18 34-51 (182)
303 1qhl_A Protein (cell division 95.7 0.003 1E-07 42.4 1.0 17 1-17 35-51 (227)
304 2f9l_A RAB11B, member RAS onco 95.7 0.0053 1.8E-07 39.9 2.2 16 1-16 13-28 (199)
305 3nbx_X ATPase RAVA; AAA+ ATPas 95.7 0.0032 1.1E-07 47.2 1.2 18 1-18 49-66 (500)
306 3hr8_A Protein RECA; alpha and 95.6 0.0058 2E-07 43.8 2.4 17 1-17 69-85 (356)
307 3k1j_A LON protease, ATP-depen 95.6 0.0049 1.7E-07 47.4 2.1 18 1-18 68-85 (604)
308 1u0j_A DNA replication protein 95.6 0.0065 2.2E-07 41.7 2.5 19 1-19 112-130 (267)
309 2vhj_A Ntpase P4, P4; non- hyd 95.6 0.0059 2E-07 43.1 2.4 24 1-24 131-156 (331)
310 2www_A Methylmalonic aciduria 95.6 0.0062 2.1E-07 43.6 2.5 17 1-17 82-98 (349)
311 2rcn_A Probable GTPase ENGC; Y 95.6 0.0053 1.8E-07 44.1 2.1 17 1-17 223-239 (358)
312 1a5t_A Delta prime, HOLB; zinc 95.6 0.0072 2.5E-07 42.9 2.8 20 1-20 32-51 (334)
313 1u0l_A Probable GTPase ENGC; p 95.6 0.0038 1.3E-07 43.7 1.3 16 1-16 177-192 (301)
314 1zu4_A FTSY; GTPase, signal re 95.5 0.0067 2.3E-07 42.9 2.4 17 1-17 113-129 (320)
315 1w5s_A Origin recognition comp 95.5 0.0068 2.3E-07 43.9 2.5 17 1-17 60-76 (412)
316 3dm5_A SRP54, signal recogniti 95.5 0.0073 2.5E-07 44.6 2.5 17 1-17 108-124 (443)
317 2zr9_A Protein RECA, recombina 95.4 0.0078 2.7E-07 43.1 2.4 17 1-17 69-85 (349)
318 2fna_A Conserved hypothetical 95.4 0.011 3.6E-07 41.9 3.1 19 1-19 38-56 (357)
319 2wsm_A Hydrogenase expression/ 95.4 0.009 3.1E-07 39.5 2.6 17 1-17 38-54 (221)
320 3lda_A DNA repair protein RAD5 95.4 0.0067 2.3E-07 44.2 2.0 16 1-16 186-201 (400)
321 2wji_A Ferrous iron transport 95.4 0.0074 2.5E-07 38.0 2.0 15 1-15 11-25 (165)
322 3upu_A ATP-dependent DNA helic 95.4 0.0079 2.7E-07 44.6 2.5 17 1-17 53-69 (459)
323 1nij_A Hypothetical protein YJ 95.3 0.0067 2.3E-07 42.8 1.9 16 1-16 12-27 (318)
324 2dpy_A FLII, flagellum-specifi 95.3 0.0086 2.9E-07 44.2 2.5 18 1-18 165-182 (438)
325 1yqt_A RNAse L inhibitor; ATP- 95.3 0.0074 2.5E-07 45.7 2.1 17 1-17 55-71 (538)
326 1yrb_A ATP(GTP)binding protein 95.3 0.0094 3.2E-07 40.5 2.4 17 1-17 22-38 (262)
327 2obl_A ESCN; ATPase, hydrolase 95.3 0.0094 3.2E-07 42.6 2.5 18 1-18 79-96 (347)
328 1xx6_A Thymidine kinase; NESG, 95.2 0.01 3.5E-07 38.7 2.4 17 1-17 16-32 (191)
329 2qag_B Septin-6, protein NEDD5 95.2 0.007 2.4E-07 44.4 1.8 16 1-16 50-65 (427)
330 2oap_1 GSPE-2, type II secreti 95.2 0.0065 2.2E-07 45.7 1.7 18 1-18 268-285 (511)
331 2v3c_C SRP54, signal recogniti 95.2 0.0087 3E-07 44.1 2.2 17 1-17 107-123 (432)
332 1tq4_A IIGP1, interferon-induc 95.2 0.0086 3E-07 43.8 2.1 16 1-16 77-92 (413)
333 1ls1_A Signal recognition part 95.2 0.01 3.6E-07 41.4 2.4 17 1-17 106-122 (295)
334 3euj_A Chromosome partition pr 95.2 0.0086 2.9E-07 44.7 2.1 17 1-17 37-53 (483)
335 3kfv_A Tight junction protein 95.1 0.087 3E-06 37.0 7.0 86 3-116 152-239 (308)
336 1ko7_A HPR kinase/phosphatase; 95.1 0.01 3.6E-07 41.7 2.3 23 1-24 152-174 (314)
337 1j8m_F SRP54, signal recogniti 95.1 0.01 3.4E-07 41.5 2.2 17 1-17 106-122 (297)
338 2zej_A Dardarin, leucine-rich 95.1 0.008 2.7E-07 38.5 1.6 15 1-15 10-24 (184)
339 3j16_B RLI1P; ribosome recycli 95.1 0.0092 3.2E-07 45.9 2.1 17 1-17 111-127 (608)
340 3p32_A Probable GTPase RV1496/ 95.1 0.012 4E-07 42.2 2.5 17 1-17 87-103 (355)
341 2dyk_A GTP-binding protein; GT 95.0 0.012 4.1E-07 36.5 2.3 16 1-16 9-24 (161)
342 1r6b_X CLPA protein; AAA+, N-t 95.0 0.012 4.2E-07 46.4 2.7 17 1-17 215-231 (758)
343 1knx_A Probable HPR(Ser) kinas 95.0 0.0091 3.1E-07 42.0 1.8 24 1-25 155-178 (312)
344 3ozx_A RNAse L inhibitor; ATP 95.0 0.0079 2.7E-07 45.6 1.6 17 1-17 33-49 (538)
345 3pxi_A Negative regulator of g 95.0 0.012 4.2E-07 46.4 2.7 17 1-17 529-545 (758)
346 1ojl_A Transcriptional regulat 95.0 0.012 4.2E-07 41.2 2.4 17 1-17 33-49 (304)
347 3b5x_A Lipid A export ATP-bind 95.0 0.0095 3.3E-07 45.6 1.9 17 1-17 377-393 (582)
348 2p67_A LAO/AO transport system 94.9 0.013 4.5E-07 41.7 2.5 17 1-17 64-80 (341)
349 3b60_A Lipid A export ATP-bind 94.9 0.0085 2.9E-07 45.8 1.6 17 1-17 377-393 (582)
350 2gj8_A MNME, tRNA modification 94.9 0.012 4.1E-07 37.4 2.0 16 1-16 12-27 (172)
351 2zts_A Putative uncharacterize 94.9 0.013 4.6E-07 39.3 2.4 15 1-15 38-52 (251)
352 2ce2_X GTPase HRAS; signaling 94.9 0.013 4.5E-07 36.3 2.2 16 1-16 11-26 (166)
353 2r8r_A Sensor protein; KDPD, P 94.9 0.015 5E-07 39.0 2.4 21 95-115 155-175 (228)
354 2wjg_A FEOB, ferrous iron tran 94.9 0.012 4.1E-07 37.6 2.0 16 1-16 15-30 (188)
355 1z2a_A RAS-related protein RAB 94.9 0.013 4.5E-07 36.5 2.2 16 1-16 13-28 (168)
356 2r2a_A Uncharacterized protein 94.9 0.014 4.8E-07 38.3 2.3 15 1-15 13-27 (199)
357 1f2t_A RAD50 ABC-ATPase; DNA d 94.8 0.014 4.7E-07 36.4 2.1 17 1-17 31-47 (149)
358 1pui_A ENGB, probable GTP-bind 94.8 0.0059 2E-07 39.9 0.4 15 1-15 34-48 (210)
359 1kao_A RAP2A; GTP-binding prot 94.8 0.015 5.1E-07 36.2 2.3 16 1-16 11-26 (167)
360 3bk7_A ABC transporter ATP-bin 94.8 0.0098 3.3E-07 45.8 1.6 17 1-17 125-141 (607)
361 2hf9_A Probable hydrogenase ni 94.8 0.016 5.5E-07 38.3 2.4 17 1-17 46-62 (226)
362 2z43_A DNA repair and recombin 94.8 0.015 5.1E-07 41.1 2.4 17 1-17 115-131 (324)
363 1qvr_A CLPB protein; coiled co 94.8 0.012 4.1E-07 47.1 2.1 17 1-17 596-612 (854)
364 3ozx_A RNAse L inhibitor; ATP 94.7 0.01 3.5E-07 45.0 1.6 17 1-17 302-318 (538)
365 1u94_A RECA protein, recombina 94.7 0.016 5.5E-07 41.6 2.4 17 1-17 71-87 (356)
366 1v5w_A DMC1, meiotic recombina 94.7 0.016 5.4E-07 41.4 2.4 16 1-16 130-145 (343)
367 2yl4_A ATP-binding cassette SU 94.7 0.0093 3.2E-07 45.8 1.2 17 1-17 378-394 (595)
368 3e1s_A Exodeoxyribonuclease V, 94.7 0.016 5.4E-07 44.3 2.5 17 1-17 212-228 (574)
369 3bk7_A ABC transporter ATP-bin 94.7 0.013 4.6E-07 45.0 2.1 17 1-17 390-406 (607)
370 2qnr_A Septin-2, protein NEDD5 94.7 0.012 4E-07 41.3 1.6 15 1-15 26-40 (301)
371 1yqt_A RNAse L inhibitor; ATP- 94.7 0.014 4.7E-07 44.3 2.1 17 1-17 320-336 (538)
372 1tf7_A KAIC; homohexamer, hexa 94.6 0.014 4.7E-07 44.1 2.0 13 1-13 47-59 (525)
373 2ged_A SR-beta, signal recogni 94.6 0.017 5.8E-07 37.1 2.3 16 1-16 56-71 (193)
374 1u8z_A RAS-related protein RAL 94.6 0.017 5.8E-07 35.9 2.2 16 1-16 12-27 (168)
375 1t9h_A YLOQ, probable GTPase E 94.6 0.0044 1.5E-07 43.5 -0.6 16 1-16 181-196 (307)
376 3qf4_B Uncharacterized ABC tra 94.6 0.011 3.7E-07 45.5 1.4 17 1-17 389-405 (598)
377 2ffh_A Protein (FFH); SRP54, s 94.6 0.019 6.3E-07 42.2 2.5 17 1-17 106-122 (425)
378 3j16_B RLI1P; ribosome recycli 94.5 0.015 5.3E-07 44.7 2.1 17 1-17 386-402 (608)
379 2j37_W Signal recognition part 94.5 0.019 6.4E-07 43.2 2.4 17 1-17 109-125 (504)
380 3szr_A Interferon-induced GTP- 94.5 0.016 5.3E-07 44.7 2.1 16 1-16 53-68 (608)
381 2nzj_A GTP-binding protein REM 94.5 0.018 6.1E-07 36.2 2.1 15 1-15 12-26 (175)
382 1nrj_B SR-beta, signal recogni 94.5 0.018 6.3E-07 37.8 2.2 17 1-17 20-36 (218)
383 1wms_A RAB-9, RAB9, RAS-relate 94.5 0.02 6.7E-07 36.1 2.3 16 1-16 15-30 (177)
384 3bh0_A DNAB-like replicative h 94.5 0.02 7E-07 40.3 2.5 17 1-17 76-92 (315)
385 3q85_A GTP-binding protein REM 94.5 0.018 6.2E-07 36.0 2.0 15 1-15 10-24 (169)
386 1g16_A RAS-related protein SEC 94.5 0.02 6.8E-07 35.8 2.2 15 1-15 11-25 (170)
387 1z0j_A RAB-22, RAS-related pro 94.5 0.02 6.9E-07 35.7 2.3 16 1-16 14-29 (170)
388 1ek0_A Protein (GTP-binding pr 94.4 0.02 6.8E-07 35.7 2.2 16 1-16 11-26 (170)
389 1z08_A RAS-related protein RAB 94.4 0.02 6.9E-07 35.8 2.2 16 1-16 14-29 (170)
390 3q72_A GTP-binding protein RAD 94.4 0.017 5.9E-07 36.0 1.9 14 1-14 10-23 (166)
391 1ky3_A GTP-binding protein YPT 94.4 0.021 7.1E-07 36.1 2.3 16 1-16 16-31 (182)
392 2erx_A GTP-binding protein DI- 94.4 0.02 6.7E-07 35.8 2.1 15 1-15 11-25 (172)
393 3io5_A Recombination and repai 94.4 0.021 7.3E-07 40.3 2.4 17 1-17 36-52 (333)
394 2i1q_A DNA repair and recombin 94.4 0.021 7E-07 40.3 2.4 16 1-16 106-121 (322)
395 1c1y_A RAS-related protein RAP 94.4 0.021 7.2E-07 35.5 2.2 16 1-16 11-26 (167)
396 1tf7_A KAIC; homohexamer, hexa 94.3 0.019 6.4E-07 43.4 2.1 17 1-17 289-305 (525)
397 2r6a_A DNAB helicase, replicat 94.3 0.023 7.7E-07 42.1 2.5 17 1-17 211-227 (454)
398 2hxs_A RAB-26, RAS-related pro 94.3 0.022 7.5E-07 35.9 2.1 16 1-16 14-29 (178)
399 2qag_C Septin-7; cell cycle, c 94.3 0.016 5.5E-07 42.5 1.6 16 1-16 39-54 (418)
400 1m2o_B GTP-binding protein SAR 94.2 0.023 7.9E-07 36.6 2.2 15 1-15 31-45 (190)
401 1m7b_A RND3/RHOE small GTP-bin 94.2 0.023 8E-07 36.2 2.2 16 1-16 15-30 (184)
402 1r2q_A RAS-related protein RAB 94.2 0.024 8.1E-07 35.4 2.2 15 1-15 14-28 (170)
403 3t1o_A Gliding protein MGLA; G 94.2 0.021 7E-07 36.7 1.9 18 1-18 22-39 (198)
404 2fn4_A P23, RAS-related protei 94.2 0.025 8.6E-07 35.7 2.3 16 1-16 17-32 (181)
405 4dsu_A GTPase KRAS, isoform 2B 94.2 0.025 8.6E-07 36.0 2.3 16 1-16 12-27 (189)
406 3k53_A Ferrous iron transport 94.2 0.022 7.4E-07 39.1 2.0 16 1-16 11-26 (271)
407 3con_A GTPase NRAS; structural 94.2 0.024 8.4E-07 36.3 2.2 16 1-16 29-44 (190)
408 4ag6_A VIRB4 ATPase, type IV s 94.1 0.026 8.8E-07 40.9 2.5 17 1-17 43-59 (392)
409 1r8s_A ADP-ribosylation factor 94.1 0.028 9.5E-07 34.9 2.4 16 1-16 8-23 (164)
410 1upt_A ARL1, ADP-ribosylation 94.1 0.026 9E-07 35.3 2.2 15 1-15 15-29 (171)
411 2xxa_A Signal recognition part 94.1 0.027 9.1E-07 41.5 2.4 17 1-17 108-124 (433)
412 4a82_A Cystic fibrosis transme 94.0 0.0092 3.1E-07 45.6 -0.0 17 1-17 375-391 (578)
413 3bc1_A RAS-related protein RAB 94.0 0.027 9.1E-07 36.0 2.2 15 1-15 19-33 (195)
414 1z0f_A RAB14, member RAS oncog 94.0 0.027 9.3E-07 35.5 2.2 16 1-16 23-38 (179)
415 2lkc_A Translation initiation 94.0 0.025 8.6E-07 35.7 2.0 15 1-15 16-30 (178)
416 3tw8_B RAS-related protein RAB 94.0 0.024 8.3E-07 35.8 1.9 15 1-15 17-31 (181)
417 2bme_A RAB4A, RAS-related prot 94.0 0.028 9.6E-07 35.8 2.2 16 1-16 18-33 (186)
418 1ega_A Protein (GTP-binding pr 94.0 0.024 8.2E-07 39.6 2.0 16 1-16 16-31 (301)
419 1svi_A GTP-binding protein YSX 94.0 0.023 8E-07 36.5 1.8 16 1-16 31-46 (195)
420 2y8e_A RAB-protein 6, GH09086P 94.0 0.028 9.7E-07 35.4 2.2 15 1-15 22-36 (179)
421 3clv_A RAB5 protein, putative; 94.0 0.029 9.8E-07 36.1 2.3 16 1-16 15-30 (208)
422 2cxx_A Probable GTP-binding pr 93.9 0.025 8.5E-07 36.1 1.8 16 1-16 9-24 (190)
423 2efe_B Small GTP-binding prote 93.9 0.031 1.1E-06 35.4 2.2 16 1-16 20-35 (181)
424 3qf4_A ABC transporter, ATP-bi 93.9 0.013 4.3E-07 45.0 0.4 17 1-17 377-393 (587)
425 3f9v_A Minichromosome maintena 93.9 0.01 3.4E-07 45.6 -0.1 20 1-20 335-354 (595)
426 2a9k_A RAS-related protein RAL 93.8 0.031 1E-06 35.5 2.2 16 1-16 26-41 (187)
427 2oil_A CATX-8, RAS-related pro 93.8 0.031 1E-06 35.9 2.2 16 1-16 33-48 (193)
428 1xp8_A RECA protein, recombina 93.8 0.032 1.1E-06 40.2 2.4 17 1-17 82-98 (366)
429 4b3f_X DNA-binding protein smu 93.8 0.031 1E-06 43.3 2.5 16 1-16 213-228 (646)
430 2g6b_A RAS-related protein RAB 93.8 0.032 1.1E-06 35.3 2.2 16 1-16 18-33 (180)
431 3ihw_A Centg3; RAS, centaurin, 93.8 0.032 1.1E-06 35.7 2.2 16 1-16 28-43 (184)
432 3qf7_A RAD50; ABC-ATPase, ATPa 93.8 0.028 9.7E-07 40.4 2.1 14 1-14 31-44 (365)
433 3kkq_A RAS-related protein M-R 93.8 0.032 1.1E-06 35.4 2.2 16 1-16 26-41 (183)
434 2j9r_A Thymidine kinase; TK1, 93.7 0.037 1.3E-06 36.7 2.4 17 1-17 36-52 (214)
435 1fzq_A ADP-ribosylation factor 93.7 0.028 9.7E-07 35.8 1.9 16 1-16 24-39 (181)
436 3lxx_A GTPase IMAP family memb 93.7 0.031 1.1E-06 37.4 2.1 16 1-16 37-52 (239)
437 2iw3_A Elongation factor 3A; a 93.7 0.028 9.5E-07 45.6 2.0 15 1-15 469-483 (986)
438 3pqc_A Probable GTP-binding pr 93.7 0.029 9.8E-07 35.9 1.8 16 1-16 31-46 (195)
439 1mh1_A RAC1; GTP-binding, GTPa 93.7 0.034 1.2E-06 35.3 2.2 16 1-16 13-28 (186)
440 2gk6_A Regulator of nonsense t 93.7 0.034 1.2E-06 42.9 2.5 17 1-17 203-219 (624)
441 1vg8_A RAS-related protein RAB 93.6 0.035 1.2E-06 36.0 2.3 16 1-16 16-31 (207)
442 2fg5_A RAB-22B, RAS-related pr 93.6 0.037 1.3E-06 35.6 2.3 16 1-16 31-46 (192)
443 3dz8_A RAS-related protein RAB 93.6 0.039 1.3E-06 35.4 2.4 17 1-17 31-47 (191)
444 2bov_A RAla, RAS-related prote 93.6 0.036 1.2E-06 35.9 2.2 16 1-16 22-37 (206)
445 2atv_A RERG, RAS-like estrogen 93.6 0.038 1.3E-06 35.6 2.3 16 1-16 36-51 (196)
446 1f6b_A SAR1; gtpases, N-termin 93.5 0.026 8.7E-07 36.7 1.4 15 1-15 33-47 (198)
447 3t5g_A GTP-binding protein RHE 93.5 0.035 1.2E-06 35.1 2.0 15 1-15 14-28 (181)
448 1gwn_A RHO-related GTP-binding 93.5 0.038 1.3E-06 36.1 2.2 16 1-16 36-51 (205)
449 2gf9_A RAS-related protein RAB 93.5 0.039 1.3E-06 35.3 2.2 16 1-16 30-45 (189)
450 3oes_A GTPase rhebl1; small GT 93.5 0.039 1.3E-06 35.8 2.2 16 1-16 32-47 (201)
451 1w36_D RECD, exodeoxyribonucle 93.5 0.039 1.3E-06 42.5 2.5 17 1-17 172-188 (608)
452 3tkl_A RAS-related protein RAB 93.5 0.039 1.3E-06 35.4 2.2 16 1-16 24-39 (196)
453 3qks_A DNA double-strand break 93.5 0.037 1.3E-06 36.3 2.1 18 1-18 31-48 (203)
454 2gf0_A GTP-binding protein DI- 93.4 0.041 1.4E-06 35.4 2.3 15 1-15 16-30 (199)
455 1ni3_A YCHF GTPase, YCHF GTP-b 93.4 0.037 1.3E-06 40.2 2.2 15 1-15 28-42 (392)
456 3ice_A Transcription terminati 93.4 0.042 1.4E-06 40.0 2.4 17 1-17 182-198 (422)
457 1z06_A RAS-related protein RAB 93.4 0.042 1.4E-06 35.2 2.3 15 1-15 28-42 (189)
458 2ew1_A RAS-related protein RAB 93.4 0.04 1.4E-06 35.9 2.2 16 1-16 34-49 (201)
459 3bwd_D RAC-like GTP-binding pr 93.4 0.042 1.4E-06 34.8 2.2 16 1-16 16-31 (182)
460 4a1f_A DNAB helicase, replicat 93.4 0.044 1.5E-06 39.0 2.5 17 1-17 54-70 (338)
461 4dzz_A Plasmid partitioning pr 93.4 0.044 1.5E-06 35.6 2.3 24 2-25 11-39 (206)
462 1ksh_A ARF-like protein 2; sma 93.3 0.036 1.2E-06 35.3 1.9 16 1-16 26-41 (186)
463 3c5c_A RAS-like protein 12; GD 93.3 0.043 1.5E-06 35.2 2.3 16 1-16 29-44 (187)
464 2bcg_Y Protein YP2, GTP-bindin 93.3 0.042 1.4E-06 35.7 2.2 16 1-16 16-31 (206)
465 2q6t_A DNAB replication FORK h 93.3 0.044 1.5E-06 40.5 2.5 17 1-17 208-224 (444)
466 1zcb_A G alpha I/13; GTP-bindi 93.3 0.034 1.2E-06 40.0 1.9 17 1-17 41-57 (362)
467 2a5j_A RAS-related protein RAB 93.3 0.043 1.5E-06 35.2 2.2 16 1-16 29-44 (191)
468 1zd9_A ADP-ribosylation factor 93.3 0.044 1.5E-06 35.1 2.2 15 1-15 30-44 (188)
469 1x3s_A RAS-related protein RAB 93.3 0.044 1.5E-06 35.1 2.2 16 1-16 23-38 (195)
470 1zbd_A Rabphilin-3A; G protein 93.3 0.04 1.4E-06 35.6 2.0 16 1-16 16-31 (203)
471 1moz_A ARL1, ADP-ribosylation 93.2 0.024 8.1E-07 36.0 0.9 15 1-15 26-40 (183)
472 1zj6_A ADP-ribosylation factor 93.2 0.041 1.4E-06 35.1 2.0 15 1-15 24-38 (187)
473 2iwr_A Centaurin gamma 1; ANK 93.2 0.032 1.1E-06 35.3 1.4 16 1-16 15-30 (178)
474 2p5s_A RAS and EF-hand domain 93.2 0.046 1.6E-06 35.4 2.2 16 1-16 36-51 (199)
475 2fh5_B SR-beta, signal recogni 93.1 0.046 1.6E-06 35.7 2.2 16 1-16 15-30 (214)
476 3reg_A RHO-like small GTPase; 93.1 0.047 1.6E-06 35.1 2.2 16 1-16 31-46 (194)
477 2fv8_A H6, RHO-related GTP-bin 93.1 0.05 1.7E-06 35.5 2.3 16 1-16 33-48 (207)
478 3cbq_A GTP-binding protein REM 93.0 0.033 1.1E-06 36.1 1.4 15 1-15 31-45 (195)
479 1z6t_A APAF-1, apoptotic prote 93.0 0.036 1.2E-06 42.3 1.7 15 1-15 155-169 (591)
480 2b6h_A ADP-ribosylation factor 92.9 0.045 1.5E-06 35.3 1.9 15 1-15 37-51 (192)
481 3b1v_A Ferrous iron uptake tra 92.9 0.049 1.7E-06 37.5 2.1 16 1-16 11-26 (272)
482 1ewq_A DNA mismatch repair pro 92.9 0.044 1.5E-06 43.4 2.0 15 1-15 584-598 (765)
483 2o52_A RAS-related protein RAB 92.9 0.05 1.7E-06 35.3 2.0 15 1-15 33-47 (200)
484 2cjw_A GTP-binding protein GEM 92.9 0.05 1.7E-06 35.1 2.0 16 1-16 14-29 (192)
485 2xtp_A GTPase IMAP family memb 92.8 0.051 1.7E-06 36.9 2.1 16 1-16 30-45 (260)
486 3cph_A RAS-related protein SEC 92.8 0.056 1.9E-06 35.2 2.2 15 1-15 28-42 (213)
487 1udx_A The GTP-binding protein 92.8 0.024 8.4E-07 41.5 0.5 16 1-16 165-180 (416)
488 2il1_A RAB12; G-protein, GDP, 92.8 0.049 1.7E-06 35.0 1.9 15 1-15 34-48 (192)
489 2a5y_B CED-4; apoptosis; HET: 92.8 0.051 1.7E-06 41.3 2.2 15 1-15 160-174 (549)
490 2gco_A H9, RHO-related GTP-bin 92.8 0.057 1.9E-06 35.0 2.2 16 1-16 33-48 (201)
491 1mky_A Probable GTP-binding pr 92.8 0.049 1.7E-06 40.2 2.0 16 1-16 188-203 (439)
492 1byi_A Dethiobiotin synthase; 92.7 0.06 2E-06 35.5 2.3 16 2-17 11-26 (224)
493 2hup_A RAS-related protein RAB 92.7 0.059 2E-06 35.0 2.3 16 1-16 37-52 (201)
494 2atx_A Small GTP binding prote 92.7 0.061 2.1E-06 34.5 2.3 16 1-16 26-41 (194)
495 2h17_A ADP-ribosylation factor 92.7 0.045 1.5E-06 34.8 1.6 16 1-16 29-44 (181)
496 3cwq_A Para family chromosome 92.6 0.065 2.2E-06 35.2 2.3 16 2-17 10-25 (209)
497 2iw3_A Elongation factor 3A; a 92.6 0.027 9.1E-07 45.7 0.5 17 1-17 707-723 (986)
498 2j1l_A RHO-related GTP-binding 92.6 0.058 2E-06 35.4 2.1 15 1-15 42-56 (214)
499 3bgw_A DNAB-like replicative h 92.6 0.063 2.1E-06 39.7 2.4 17 1-17 205-221 (444)
500 4gzl_A RAS-related C3 botulinu 92.6 0.062 2.1E-06 35.0 2.2 16 1-16 38-53 (204)
No 1
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=100.00 E-value=9.2e-36 Score=199.41 Aligned_cols=168 Identities=43% Similarity=0.716 Sum_probs=153.4
Q ss_pred CCCCChhHHHHHHHHHhCCceechhHHHHHHHhcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHcC--CCceEEEeCC
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHLSAGDLLEAEAESGSNDGKMIREYKKEGKLVPSEIIVKLLQKAMQES--QNKNFVIDGF 78 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~i~d~~ 78 (169)
||||||+|+|+.|++++|+.+|+++++++..+..+++++..+..++..|...|+++...++...+... ...+||+|||
T Consensus 37 pPGsGKgTqa~~L~~~~g~~hIstGdllR~~i~~~t~lg~~~~~~~~~G~lVpde~~~~lv~~~l~~~~~~~~g~ilDGf 116 (217)
T 3umf_A 37 GPGSGKGTQCEKLVQKFHFNHLSSGDLLRAEVQSGSPKGKELKAMMERGELVPLEVVLALLKEAMIKLVDKNCHFLIDGY 116 (217)
T ss_dssp CTTCCHHHHHHHHHHHHCCEEECHHHHHHHHHTTCCHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHTTTCSEEEEETB
T ss_pred CCCCCHHHHHHHHHHHHCCceEcHHHHHHHHHHcCCchHHHHHHHHhcCCCCCHHHHHHHHHHHHhhccccccCcccccC
Confidence 89999999999999999999999999999999999999999999999999999999999998887642 3678999999
Q ss_pred CCChHHHHHHHhhcCCCCCEEEEEEcCHHHHHHHHhcC--CCCCCCCcHHHHHHHHHHHhhchhhHHHHhhhcCcEEEEe
Q 040894 79 PRNEENLSAAENILKIEPNAVLVFDCSEEEMTRRILSR--NQGRVDDKIDTIKKRLNVYSESTLPVINYYSSKGKVRKID 156 (169)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id 156 (169)
|++..++..+.. ....++.+|+|++|.+++.+|+..| ..+|.+++.+.+.+|+..|.+...++.++|...+.++.||
T Consensus 117 PRt~~Qa~~l~~-~~~~~~~vi~l~v~~e~~~~Rl~~R~~~~~R~DD~~e~i~~Rl~~Y~~~t~pl~~~Y~~~~~l~~Id 195 (217)
T 3umf_A 117 PRELDQGIKFEK-EVCPCLCVINFDVSEEVMRKRLLKRAETSNRVDDNEETIVKRFRTFNELTKPVIEHYKQQNKVITID 195 (217)
T ss_dssp CSSHHHHHHHHH-HTCCCSEEEEEECCHHHHHHHHSCC------CHHHHHHHHHHHHHHHHHTHHHHHHHHTTTCEEEEE
T ss_pred CCcHHHHHHHHH-hCCccCEEEeccCCHHHHHHHHhcccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 999999999988 7888999999999999999999998 4567788889999999999999999999999888999999
Q ss_pred CCCChHHHHHhhC
Q 040894 157 AGRPIEEVFDEIK 169 (169)
Q Consensus 157 ~~~~~~~v~~~i~ 169 (169)
+++++++|+++|+
T Consensus 196 g~~~~eeV~~~I~ 208 (217)
T 3umf_A 196 ASGTVDAIFDKVN 208 (217)
T ss_dssp TTSCHHHHHHHHH
T ss_pred CCCCHHHHHHHHH
Confidence 9999999999873
No 2
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=100.00 E-value=1.1e-34 Score=193.33 Aligned_cols=167 Identities=40% Similarity=0.746 Sum_probs=152.0
Q ss_pred CCCCChhHHHHHHHHHhCCceechhHHHHHHHhcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCCceEEEeCCCC
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHLSAGDLLEAEAESGSNDGKMIREYKKEGKLVPSEIIVKLLQKAMQESQNKNFVIDGFPR 80 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~d~~~~ 80 (169)
||||||+|+|+.|++++|+++|+++++++..+..++.++..++.++..|...|+++...++...+.. ..+||+||||+
T Consensus 8 pPGsGKgTqa~~La~~~g~~~istGdllR~~i~~~t~lg~~~~~~~~~G~lvpd~iv~~lv~~~l~~--~~~~ilDGfPR 85 (206)
T 3sr0_A 8 PPGAGKGTQAKRLAKEKGFVHISTGDILREAVQKGTPLGKKAKEYMERGELVPDDLIIALIEEVFPK--HGNVIFDGFPR 85 (206)
T ss_dssp STTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHHTCHHHHHHHHHHHHTCCCCHHHHHHHHHHHCCS--SSCEEEESCCC
T ss_pred CCCCCHHHHHHHHHHHHCCeEEcHHHHHHHHHHhcChhhhhHHHHHhcCCcCCHHHHHHHHHHhhcc--CCceEecCCch
Confidence 8999999999999999999999999999999999999999999999999999999999999998876 56799999999
Q ss_pred ChHHHHHHHhh---cCCCCCEEEEEEcCHHHHHHHHhcC----CC------------------CCCCCcHHHHHHHHHHH
Q 040894 81 NEENLSAAENI---LKIEPNAVLVFDCSEEEMTRRILSR----NQ------------------GRVDDKIDTIKKRLNVY 135 (169)
Q Consensus 81 ~~~~~~~~~~~---~~~~~~~~i~l~~~~~~~~~R~~~R----~~------------------~~~~~~~~~~~~~~~~~ 135 (169)
+..++..+... ....++.+|+|++|.+++.+|+..| .+ .|.+++.+.+.+|+..|
T Consensus 86 t~~Qa~~l~~~l~~~~~~~~~vi~l~v~~e~l~~Rl~~R~~~~~~g~~y~~~~~pp~~g~~l~~r~DD~~e~i~~Rl~~Y 165 (206)
T 3sr0_A 86 TVKQAEALDEMLEKKGLKVDHVLLFEVPDEVVIERLSGRRINPETGEVYHVKYNPPPPGVKVIQREDDKPEVIKKRLEVY 165 (206)
T ss_dssp SHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEECTTTCCEEETTTBCCCTTCCCBCCGGGSHHHHHHHHHHH
T ss_pred hHHHHHHHHhhHHHhccccceeeecCCCHHHHHHHHhCCccccCCCceeeeeccCCCCCceecccCCCCHHHHHHHHHHH
Confidence 99999877542 5578999999999999999999987 12 25678889999999999
Q ss_pred hhchhhHHHHhhhcCcEEEEeCCCChHHHHHhhC
Q 040894 136 SESTLPVINYYSSKGKVRKIDAGRPIEEVFDEIK 169 (169)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~id~~~~~~~v~~~i~ 169 (169)
++...++.++|...+.++.||+++++++|+++|+
T Consensus 166 ~~~t~pl~~~Y~~~~~l~~Idg~~~~~eV~~~I~ 199 (206)
T 3sr0_A 166 REQTAPLIEYYKKKGILRIIDASKPVEEVYRQVL 199 (206)
T ss_dssp HHHTTHHHHHHHTTTCEEEEETTSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHH
Confidence 9999999999998888999999999999999873
No 3
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=100.00 E-value=2.6e-34 Score=192.89 Aligned_cols=168 Identities=35% Similarity=0.617 Sum_probs=142.8
Q ss_pred CCCCChhHHHHHHHHHhCCceechhHHHHHHHhcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC-CceEEEeCCC
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHLSAGDLLEAEAESGSNDGKMIREYKKEGKLVPSEIIVKLLQKAMQESQ-NKNFVIDGFP 79 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~i~d~~~ 79 (169)
||||||||+|+.|++++++.+++++++++..+..+++++..++.++..+...|++....++...+.... ..+||+||||
T Consensus 16 ~pGsGKsT~a~~L~~~~g~~~is~gdllR~~~~~~t~lG~~i~~~~~~G~lvpdei~~~ll~~~l~~~~~~~g~ILDGfP 95 (230)
T 3gmt_A 16 APGAGKGTQANFIKEKFGIPQISTGDMLRAAVKAGTPLGVEAKTYMDEGKLVPDSLIIGLVKERLKEADCANGYLFDGFP 95 (230)
T ss_dssp CTTSCHHHHHHHHHHHHTCCEECHHHHHHHHHHTTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHSGGGTTCEEEESCC
T ss_pred CCCCCHHHHHHHHHHHhCCCeeechHHHHHhccCCChHHHHHHHHHhhccccccHHHHHHHHHHHhCcccCCCeEecCCC
Confidence 799999999999999999999999999999988999999999999999999999999999999887643 5689999999
Q ss_pred CChHHHHHHHhhcCCCCCEEEEEEcCHHHHHHHHhcC----CCC-------------------------CCCCcHHHHHH
Q 040894 80 RNEENLSAAENILKIEPNAVLVFDCSEEEMTRRILSR----NQG-------------------------RVDDKIDTIKK 130 (169)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R----~~~-------------------------~~~~~~~~~~~ 130 (169)
++..++..|.. ....++.+|+|++|++++.+|+..| .+| |++++.+.+.+
T Consensus 96 Rt~~Qa~~L~~-~~~~~d~VI~Ldvp~e~l~~Rl~~R~~~~~~G~~Yh~~~~pp~~~~~~d~~g~~L~~R~DD~~e~i~~ 174 (230)
T 3gmt_A 96 RTIAQADAMKE-AGVAIDYVLEIDVPFSEIIERMSGRRTHPASGRTYHVKFNPPKVEGKDDVTGEPLVQRDDDKEETVKK 174 (230)
T ss_dssp CSHHHHHHHHH-TTCCCSEEEEECCCHHHHHHHHHTEEEETTTTEEEETTTBCCSSTTBCTTTCCBCBCCGGGSHHHHHH
T ss_pred CcHHHHHHHHH-hCCCccEEEEEeCCHHHHHHHHHcCCcccccCCcccccCCCCCccCcCCCccCccccCCCCCHHHHHH
Confidence 99999988887 7778999999999999999999988 222 77889999999
Q ss_pred HHHHHhhchhhHHHHhhhc-----------CcEEEEeCCCChHHHHHhhC
Q 040894 131 RLNVYSESTLPVINYYSSK-----------GKVRKIDAGRPIEEVFDEIK 169 (169)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~-----------~~~~~id~~~~~~~v~~~i~ 169 (169)
|+..|.+...++.++|... +.+..||+++++++|.++|+
T Consensus 175 Rl~~y~~~t~pl~~~Y~~~~~~~~~~~~~~~~l~~idg~~~~~eV~~~i~ 224 (230)
T 3gmt_A 175 RLDVYEAQTKPLITYYGDWARRGAENGLKAPAYRKISGLGAVEEIRARVR 224 (230)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCBTTBCCCEEEEECC------------
T ss_pred HHHHHHHHHHHHHHHHHhhhcccccccccCCeEEEEECCCCHHHHHHHHH
Confidence 9999999999999999863 67899999999999999874
No 4
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=99.97 E-value=4.8e-29 Score=170.74 Aligned_cols=168 Identities=35% Similarity=0.606 Sum_probs=148.0
Q ss_pred CCCCChhHHHHHHHHHhCCceechhHHHHHHHhcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC-CceEEEeCCC
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHLSAGDLLEAEAESGSNDGKMIREYKKEGKLVPSEIIVKLLQKAMQESQ-NKNFVIDGFP 79 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~i~d~~~ 79 (169)
||||||||+++.|++++++.+++.|++++.....++..+..+..++..+...+++....++...+.... +.++|+||||
T Consensus 37 ~~GsGKsT~a~~L~~~~g~~~is~~~~~r~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~ildg~p 116 (243)
T 3tlx_A 37 APGSGKGTQSLNLKKSHCYCHLSTGDLLREAAEKKTELGLKIKNIINEGKLVDDQMVLSLVDEKLKTPQCKKGFILDGYP 116 (243)
T ss_dssp CTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHTTSSSHHHHHHHHHHHTTCCCCHHHHHHHHHHHTTSGGGSSEEEEESCC
T ss_pred CCCCCHHHHHHHHHHHhCCeEEecHHHHHHHHhccchHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcccccCCEEecCCC
Confidence 799999999999999999999999999999888899999999999999999999988888888776533 6789999999
Q ss_pred CChHHHHHHHhh---cCCCCCEEEEEEcCHHHHHHHHhcCC----C-------------------------CCCCCcHHH
Q 040894 80 RNEENLSAAENI---LKIEPNAVLVFDCSEEEMTRRILSRN----Q-------------------------GRVDDKIDT 127 (169)
Q Consensus 80 ~~~~~~~~~~~~---~~~~~~~~i~l~~~~~~~~~R~~~R~----~-------------------------~~~~~~~~~ 127 (169)
.+..+...+... ....||.+|+|++|++++.+|+.+|. + .|.+++.+.
T Consensus 117 ~~~~q~~~l~~~l~~~~~~~d~vi~l~~p~e~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~~~~~~l~~r~dd~~e~ 196 (243)
T 3tlx_A 117 RNVKQAEDLNKLLQKNQTKLDGVFYFNVPDEVLVNRISGRLIHKPSGRIYHKIFNPPKVPFRDDVTNEPLIQREDDNEDV 196 (243)
T ss_dssp CSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEEETTTTEEEETTTBCCSSTTBCTTTCCBCBCCGGGSHHH
T ss_pred CcHHHHHHHHHHHHHcCCCCceEEEEeCCHHHHHHHHHcCCCCcccCcccccccCCCcccCccccccccccCCCCCCHHH
Confidence 999887765542 34678999999999999999999882 1 245678889
Q ss_pred HHHHHHHHhhchhhHHHHhhhcCcEEEEeCCCChHHHHHhh
Q 040894 128 IKKRLNVYSESTLPVINYYSSKGKVRKIDAGRPIEEVFDEI 168 (169)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~v~~~i 168 (169)
+.+|+..|.....++.++|...+.++.||++.++++|+++|
T Consensus 197 i~~Rl~~~~~~~~~l~~~y~~~~~~~~id~~~~~~~v~~~i 237 (243)
T 3tlx_A 197 LKKRLTVFKSETSPLISYYKNKNLLINLDATQPANDLEKKI 237 (243)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHTTCEEEEETTSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCcEEEEECCCCHHHHHHHH
Confidence 99999999999999999998878899999999999999987
No 5
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=99.97 E-value=2.9e-28 Score=164.36 Aligned_cols=168 Identities=33% Similarity=0.613 Sum_probs=138.6
Q ss_pred CCCCChhHHHHHHHHHhCCceechhHHHHHHHhcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC-CceEEEeCCC
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHLSAGDLLEAEAESGSNDGKMIREYKKEGKLVPSEIIVKLLQKAMQESQ-NKNFVIDGFP 79 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~i~d~~~ 79 (169)
+|||||||+++.|++++++.++++|++++.....++..+..+++++..+...+++.....+...+.... +.++|+||||
T Consensus 13 ~~GsGKsT~a~~La~~l~~~~i~~d~li~~~~~~~t~~g~~i~~~~~~g~~~~~~~~~~~i~~~l~~~~~~~~~i~dg~~ 92 (217)
T 3be4_A 13 APGSGKGTQCEFIKKEYGLAHLSTGDMLREAIKNGTKIGLEAKSIIESGNFVGDEIVLGLVKEKFDLGVCVNGFVLDGFP 92 (217)
T ss_dssp CTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTC--CCHHHHHHHHHTCCCCHHHHHHHHHHHHHTTTTTTCEEEESCC
T ss_pred CCCCCHHHHHHHHHHHhCceEEehhHHHHHHHHcCCHHHHHHHHHHHCCCcCCHHHHHHHHHHHHhccccCCCEEEeCCC
Confidence 699999999999999999999999999998878888889999999888888889888888887776432 6789999999
Q ss_pred CChHHHHHHHhh---cCCCCCEEEEEEcCHHHHHHHHhcCC----CC-------------------------CCCCcHHH
Q 040894 80 RNEENLSAAENI---LKIEPNAVLVFDCSEEEMTRRILSRN----QG-------------------------RVDDKIDT 127 (169)
Q Consensus 80 ~~~~~~~~~~~~---~~~~~~~~i~l~~~~~~~~~R~~~R~----~~-------------------------~~~~~~~~ 127 (169)
.+..+...+... ....||.+|||++|++++.+|+..|. +| +.++..+.
T Consensus 93 ~~~~~~~~l~~~l~~~~~~~d~vi~L~~~~e~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~~~~~~l~~~~dd~~e~ 172 (217)
T 3be4_A 93 RTIPQAEGLAKILSEIGDSLTSVIYFEIDDSEIIERISGRCTHPASGRIYHVKYNPPKQPGIDDVTGEPLVWRDDDNAEA 172 (217)
T ss_dssp CSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHHHHHHHTEEECTTTCCEEETTTBCCSSTTBCTTTCCBCBCCGGGSHHH
T ss_pred CCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCCCCccccCccccccCCCCccccccccccccccCCCCCHHH
Confidence 987666554421 45679999999999999999998771 11 22345677
Q ss_pred HHHHHHHHhhchhhHHHHhhhcCcEEEEeCCCChHHHHHhh
Q 040894 128 IKKRLNVYSESTLPVINYYSSKGKVRKIDAGRPIEEVFDEI 168 (169)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~v~~~i 168 (169)
+.+++..|.....++.++|...+.++.||+++++++|+++|
T Consensus 173 v~~r~~~~~~~~~~l~~~y~~~~~~~~id~~~~~~~v~~~i 213 (217)
T 3be4_A 173 VKVRLDVFHKQTAPLVKFYEDLGILKRVNAKLPPKEVTEQI 213 (217)
T ss_dssp HHHHHHHHHHHTTHHHHHHHTTTCEEEEETTSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHH
Confidence 88899999998899888887666789999999999999987
No 6
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=99.97 E-value=2.2e-28 Score=164.89 Aligned_cols=168 Identities=28% Similarity=0.581 Sum_probs=146.5
Q ss_pred CCCCChhHHHHHHHHHhCCceechhHHHHHHHhcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC-CceEEEeCCC
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHLSAGDLLEAEAESGSNDGKMIREYKKEGKLVPSEIIVKLLQKAMQESQ-NKNFVIDGFP 79 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~i~d~~~ 79 (169)
||||||||+++.|++++++.+++.|++++.....++..+..+..++..+...++......+...+.... +.++|+||||
T Consensus 8 ~~GsGKsT~a~~L~~~~~~~~i~~d~~~r~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~ildg~p 87 (216)
T 3dl0_A 8 LPGAGKGTQGERIVEKYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPDEVTIGIVKERLGKDDCERGFLLDGFP 87 (216)
T ss_dssp STTSSHHHHHHHHHHHSSCCEEEHHHHHHHHHHTTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHTSGGGTTCEEEESCC
T ss_pred CCCCCHHHHHHHHHHHhCCcEEeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcccccCCEEEeCCC
Confidence 799999999999999999999999999999988888999999999998989999888888888776532 7789999999
Q ss_pred CChHHHHHHHhh---cCCCCCEEEEEEcCHHHHHHHHhcCC-----------------------------CCCCCCcHHH
Q 040894 80 RNEENLSAAENI---LKIEPNAVLVFDCSEEEMTRRILSRN-----------------------------QGRVDDKIDT 127 (169)
Q Consensus 80 ~~~~~~~~~~~~---~~~~~~~~i~l~~~~~~~~~R~~~R~-----------------------------~~~~~~~~~~ 127 (169)
....+...+... ....+|.+|+|++|++++.+|+..|. .+|..++.+.
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~~~~~~l~~r~~d~~e~ 167 (216)
T 3dl0_A 88 RTVAQAEALEEILEEMGKPIDYVINIQVDKDVLMERLTGRRICSVCGTTYHLVFNPPKTPGICDKDGGELYQRADDNEET 167 (216)
T ss_dssp CSHHHHHHHHHHHHHTTCCCSEEEEEECCGGGHHHHHHTEEEETTTCCEEETTTBCCSSTTBCTTTCCBEECCTTCSHHH
T ss_pred CCHHHHHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHHCCCcCCccCCccccccCCCcccCccccccccccCCCCCCHHH
Confidence 998877665542 34568999999999999999999871 1346678889
Q ss_pred HHHHHHHHhhchhhHHHHhhhcCcEEEEeCCCChHHHHHhh
Q 040894 128 IKKRLNVYSESTLPVINYYSSKGKVRKIDAGRPIEEVFDEI 168 (169)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~v~~~i 168 (169)
+.+++..|.+...+..++|...+.+++||++.++++++++|
T Consensus 168 i~~rl~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~v~~~i 208 (216)
T 3dl0_A 168 VTKRLEVNMKQTAPLLDFYDEKGYLVNVNGQQDIQDVYADL 208 (216)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCEEEEECSSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHH
Confidence 99999999999999999998777889999999999999887
No 7
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=99.96 E-value=4.9e-28 Score=163.13 Aligned_cols=168 Identities=33% Similarity=0.632 Sum_probs=145.7
Q ss_pred CCCCChhHHHHHHHHHhCCceechhHHHHHHHhcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC-CceEEEeCCC
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHLSAGDLLEAEAESGSNDGKMIREYKKEGKLVPSEIIVKLLQKAMQESQ-NKNFVIDGFP 79 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~i~d~~~ 79 (169)
||||||||+|+.|++.+++.+++.|++++.....++..+..+..++..+...++......+...+.... +.++|+||+|
T Consensus 8 ~~GsGKsT~a~~L~~~~~~~~i~~d~~~r~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~ildg~p 87 (216)
T 3fb4_A 8 LPGAGKGTQAEQIIEKYEIPHISTGDMFRAAIKNGTELGLKAKSFMDQGNLVPDEVTIGIVHERLSKDDCQKGFLLDGFP 87 (216)
T ss_dssp STTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHHTTCHHHHHHHHHHHHTCCCCHHHHHHHHHHHHTSGGGTTCEEEESCC
T ss_pred CCCCCHHHHHHHHHHHhCCcEeeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcccCCCcEEEeCCC
Confidence 799999999999999999999999999999988888899999999988989999888888888886532 6789999999
Q ss_pred CChHHHHHHHhh---cCCCCCEEEEEEcCHHHHHHHHhcCC-----------------------------CCCCCCcHHH
Q 040894 80 RNEENLSAAENI---LKIEPNAVLVFDCSEEEMTRRILSRN-----------------------------QGRVDDKIDT 127 (169)
Q Consensus 80 ~~~~~~~~~~~~---~~~~~~~~i~l~~~~~~~~~R~~~R~-----------------------------~~~~~~~~~~ 127 (169)
....+...+... ....+|.+|+|++|++++.+|+..|. .+|..+..+.
T Consensus 88 ~~~~~~~~l~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~~~~~~l~~r~~d~~e~ 167 (216)
T 3fb4_A 88 RTVAQADALDSLLTDLGKKLDYVLNIKVEQEELMKRLTGRWICKTCGATYHTIFNPPAVEGICDKDGGELYQRIDDKPET 167 (216)
T ss_dssp CSHHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHSEEEETTTCCEEETTTBCCSSTTBCTTTCCBEECCGGGSHHH
T ss_pred CCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCCCCCccCCccccccCCCCcccccccccCccccCCCCCHHH
Confidence 998877666542 34568999999999999999999871 1235567888
Q ss_pred HHHHHHHHhhchhhHHHHhhhcCcEEEEeCCCChHHHHHhh
Q 040894 128 IKKRLNVYSESTLPVINYYSSKGKVRKIDAGRPIEEVFDEI 168 (169)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~v~~~i 168 (169)
+.+++..|.+...+..++|...+.+++||++++++++.++|
T Consensus 168 i~~rl~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~v~~~i 208 (216)
T 3fb4_A 168 VKNRLDVNMKQTQPLLDFYSQKGVLKDIDGQQDIKKVFVDI 208 (216)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCEEEEECSSCHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHcCCcEEEEECCCCHHHHHHHH
Confidence 99999999999999999998877889999999999999887
No 8
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=99.96 E-value=5.8e-28 Score=162.58 Aligned_cols=167 Identities=35% Similarity=0.622 Sum_probs=141.9
Q ss_pred CCCCChhHHHHHHHHHhCCceechhHHHHHHHhcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC-CceEEEeCCC
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHLSAGDLLEAEAESGSNDGKMIREYKKEGKLVPSEIIVKLLQKAMQESQ-NKNFVIDGFP 79 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~i~d~~~ 79 (169)
||||||||+++.|++++++.++++|+++++.+..++..+..++.++..+...+.+....++...+.... +.++|+||||
T Consensus 8 ~~GsGKsT~a~~L~~~~g~~~i~~d~~~r~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~i~~~l~~~~~~~~~i~dg~~ 87 (214)
T 1e4v_A 8 APVAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDELVIALVKERIAQEDCRNGFLLDGFP 87 (214)
T ss_dssp STTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHHHTCTTTGGGHHHHHHTCCCCHHHHHHHHHHHHTSGGGGGCEEEESCC
T ss_pred CCCCCHHHHHHHHHHHhCCeEEeHHHHHHHHHHcCChHHHHHHHHHHCCCcCCHHHHHHHHHHHHhccccCCCEEEeCCC
Confidence 699999999999999999999999999999878888888888888887888888888888888776532 4679999999
Q ss_pred CChHHHHHHHhhcCCCCCEEEEEEcCHHHHHHHHhcCC----C-------------------------CCCCCcHHHHHH
Q 040894 80 RNEENLSAAENILKIEPNAVLVFDCSEEEMTRRILSRN----Q-------------------------GRVDDKIDTIKK 130 (169)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~----~-------------------------~~~~~~~~~~~~ 130 (169)
....+...+.. ....||.+|+|++|++++.+|+..|. + .|.++..+.+.+
T Consensus 88 ~~~~~~~~l~~-~~~~~d~vi~l~~~~e~~~~R~~~R~~~~~~g~~~~~~~~pp~~~~~~~~~~~~l~~r~dd~~~~~~~ 166 (214)
T 1e4v_A 88 RTIPQADAMKE-AGINVDYVLEFDVPDELIVDRIVGRRVHAPSGRVYHVKFNPPKVEGKDDVTGEELTTRKDDQEETVRK 166 (214)
T ss_dssp CSHHHHHHHHH-TTCCCSEEEEEECCHHHHHHHHHTEEEETTTTEEEETTTBCCSSTTBCTTTCCBCBCCTTCSHHHHHH
T ss_pred CCHHHHHHHHh-cCCCCCEEEEEECCHHHHHHHHHCCcccCCcCCcccccCCCCCccccccccccccccCCCCCHHHHHH
Confidence 98887777766 55679999999999999999998761 1 255667788899
Q ss_pred HHHHHhhchhhHHHHhhhc-----CcEEEEeCCCChHHHHHhh
Q 040894 131 RLNVYSESTLPVINYYSSK-----GKVRKIDAGRPIEEVFDEI 168 (169)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~-----~~~~~id~~~~~~~v~~~i 168 (169)
++..|.....++.++|... ..++.||+++++++|+++|
T Consensus 167 rl~~y~~~~~~l~~~~~~~~~~~~~~~~~ida~~~~~~v~~~i 209 (214)
T 1e4v_A 167 RLVEYHQMTAPLIGYYSKEAEAGNTKYAKVDGTKPVAEVRADL 209 (214)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHTSCEEEEEETTSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcccccCCeEEEEECCCCHHHHHHHH
Confidence 9999999999888888743 5789999999999999887
No 9
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=99.96 E-value=1.8e-27 Score=160.83 Aligned_cols=168 Identities=27% Similarity=0.547 Sum_probs=139.5
Q ss_pred CCCCChhHHHHHHHHHhCCceechhHHHHHHHhcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHH-cC-CCceEEEeCC
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHLSAGDLLEAEAESGSNDGKMIREYKKEGKLVPSEIIVKLLQKAMQ-ES-QNKNFVIDGF 78 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~-~~~~~i~d~~ 78 (169)
||||||||+++.|++++++.+++.|++++.....++..+..++.++..+...+++.....+...+. .. .+.++|+|||
T Consensus 12 ~~GsGKsT~a~~La~~l~~~~i~~d~~~~~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~l~~~l~~~~~~~~~~i~dg~ 91 (220)
T 1aky_A 12 PPGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGTQLGLEAKKIMDQGGLVSDDIMVNMIKDELTNNPACKNGFILDGF 91 (220)
T ss_dssp CTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHCGGGGSCEEEESC
T ss_pred CCCCCHHHHHHHHHHHcCceEEehhHHHHHHHHcCChHHHHHHHHHHCCCcCCHHHHHHHHHHHHHhccccCCCeEEeCC
Confidence 699999999999999999999999999998878888889999999988888899888888888776 22 2568999999
Q ss_pred CCChHHHHHHHhh---cCCCCCEEEEEEcCHHHHHHHHhcCC----C-------------------------CCCCCcHH
Q 040894 79 PRNEENLSAAENI---LKIEPNAVLVFDCSEEEMTRRILSRN----Q-------------------------GRVDDKID 126 (169)
Q Consensus 79 ~~~~~~~~~~~~~---~~~~~~~~i~l~~~~~~~~~R~~~R~----~-------------------------~~~~~~~~ 126 (169)
|....+...+... ....||.+|||++|++++.+|+..|. + .+.++..+
T Consensus 92 ~~~~~~~~~l~~~l~~~~~~~d~vi~L~~~~e~~~~R~~~r~~~~~~g~~y~~~~~pp~~~~~d~~~~~~l~~r~dd~~~ 171 (220)
T 1aky_A 92 PRTIPQAEKLDQMLKEQGTPLEKAIELKVDDELLVARITGRLIHPASGRSYHKIFNPPKEDMKDDVTGEALVQRSDDNAD 171 (220)
T ss_dssp CCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHHHHHHHTEEECTTTCCEEETTTBCCSSTTBCTTTCCBCBCCTTCSHH
T ss_pred CCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhCCCccCccCCccccccCCCcccccccccccccccCCCCCHH
Confidence 9887765544321 45679999999999999999998761 0 13445677
Q ss_pred HHHHHHHHHhhchhhHHHHhhhcCcEEEEeCCCChHHHHHhh
Q 040894 127 TIKKRLNVYSESTLPVINYYSSKGKVRKIDAGRPIEEVFDEI 168 (169)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~v~~~i 168 (169)
.+.+++..|.....++.++|...+.++.||+++++++|+++|
T Consensus 172 ~~~~rl~~~~~~~~~l~~~y~~~~~~~~id~~~~~~~v~~~i 213 (220)
T 1aky_A 172 ALKKRLAAYHAQTEPIVDFYKKTGIWAGVDASQPPATVWADI 213 (220)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHTCEEEEETTSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHH
Confidence 788889999998888888887666789999999999999887
No 10
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=99.96 E-value=4.7e-27 Score=160.03 Aligned_cols=168 Identities=36% Similarity=0.626 Sum_probs=139.9
Q ss_pred CCCCChhHHHHHHHHHhCCceechhHHHHHHHhcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC-CceEEEeCCC
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHLSAGDLLEAEAESGSNDGKMIREYKKEGKLVPSEIIVKLLQKAMQESQ-NKNFVIDGFP 79 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~i~d~~~ 79 (169)
+|||||||+++.|++++++.++++|++++.....++..+..++.++..+...+++....++...+.... +.++|+||||
T Consensus 24 ~~GsGKsT~a~~La~~l~~~~i~~d~li~~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~i~~~l~~~~~~~g~ildg~~ 103 (233)
T 1ak2_A 24 PPGAGKGTQAPKLAKNFCVCHLATGDMLRAMVASGSELGKKLKATMDAGKLVSDEMVLELIEKNLETPPCKNGFLLDGFP 103 (233)
T ss_dssp CTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHTSGGGTTCEEEESCC
T ss_pred CCCCCHHHHHHHHHHHhCCceecHHHHHHHHHHcCChhHHHHHHHHHCCCcCCHHHHHHHHHHHHhcccccCcEEEeCCC
Confidence 699999999999999999999999999999877788889999999988888899888888888776532 5679999999
Q ss_pred CChHHHHHHHhh---cCCCCCEEEEEEcCHHHHHHHHhcCCC------------------------C-----CCCCcHHH
Q 040894 80 RNEENLSAAENI---LKIEPNAVLVFDCSEEEMTRRILSRNQ------------------------G-----RVDDKIDT 127 (169)
Q Consensus 80 ~~~~~~~~~~~~---~~~~~~~~i~l~~~~~~~~~R~~~R~~------------------------~-----~~~~~~~~ 127 (169)
.+..+...+... ....++.+|||++|++++.+|+..|.. + |.++..+.
T Consensus 104 ~~~~~~~~l~~~l~~~~~~~d~vi~L~~~~e~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~~~~~~l~~r~d~~~~~ 183 (233)
T 1ak2_A 104 RTVRQAEMLDDLMEKRKEKLDSVIEFSIPDSLLIRRITGRLIHPQSGRSYHEEFNPPKEPMKDDITGEPLIRRSDDNKKA 183 (233)
T ss_dssp CSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHHHHHHHTCEECTTTCCEEBTTTBCCSSTTBCTTTCCBCEECCCCCHHH
T ss_pred CCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCCcCCccCCccccccCCCccccccccccccccCCCCCCHHH
Confidence 987766544321 345699999999999999999987720 1 34456778
Q ss_pred HHHHHHHHhhchhhHHHHhhhcCcEEEEeCCCChHHHHHhh
Q 040894 128 IKKRLNVYSESTLPVINYYSSKGKVRKIDAGRPIEEVFDEI 168 (169)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~v~~~i 168 (169)
+.+++..|.....+..++|...+.+++||+++++++|+++|
T Consensus 184 ~~~r~~~y~~~~~~~~~~y~~~~~~~~id~~~~~~~v~~~I 224 (233)
T 1ak2_A 184 LKIRLEAYHTQTTPLVEYYSKRGIHSAIDASQTPDVVFASI 224 (233)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCEEEEETTSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHH
Confidence 88889999988888888887666789999999999999887
No 11
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=99.96 E-value=2.5e-27 Score=160.37 Aligned_cols=168 Identities=24% Similarity=0.450 Sum_probs=137.6
Q ss_pred CCCCChhHHHHHHHHHhCCceechhHHHHHHHhcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCCceEEEeCCCC
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHLSAGDLLEAEAESGSNDGKMIREYKKEGKLVPSEIIVKLLQKAMQESQNKNFVIDGFPR 80 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~d~~~~ 80 (169)
||||||||+++.|++++++.+++.|++++.....++..+..+++++..+...+.+.....+...+....+.++|+||||.
T Consensus 8 ~~GsGKsT~a~~La~~lg~~~i~~dd~~r~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~i~~~l~~~~g~~vIlDg~~~ 87 (223)
T 2xb4_A 8 PNGSGKGTQGNLVKDKYSLAHIESGGIFREHIGGGTELGKKAKEFIDRGDLVPDDITIPMVLETLESKGKDGWLLDGFPR 87 (223)
T ss_dssp CTTSCHHHHHHHHHHHHTCEEEEHHHHHHHHTTTTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHCTTCEEEESCCC
T ss_pred CCCCCHHHHHHHHHHHhCCeEEchHHHHHHHHHcCCHHHHHHHHHHHcCCcCcHHHHHHHHHHHHhcccCCeEEEeCCcC
Confidence 79999999999999999999999999999987777788888999888888888888888888777642267899999999
Q ss_pred ChHHHHHHHhh---cCCCCCEEEEEEcCHHHHHHHHhcCC-----CC--------------------------CCCCcHH
Q 040894 81 NEENLSAAENI---LKIEPNAVLVFDCSEEEMTRRILSRN-----QG--------------------------RVDDKID 126 (169)
Q Consensus 81 ~~~~~~~~~~~---~~~~~~~~i~l~~~~~~~~~R~~~R~-----~~--------------------------~~~~~~~ 126 (169)
...+...+... ....|+.+|||++|++++.+|+..|. +| +.++..+
T Consensus 88 ~~~~~~~l~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~~~~~~g~~y~~~~~~p~~~~~~~~~~~~~l~~r~dd~~e 167 (223)
T 2xb4_A 88 NTVQAQKLFEALQEKGMKINFVIEILLPREVAKNRIMGRRICKNNPNHPNNIFIDAIKPNGDVCRVCGGALSARADDQDE 167 (223)
T ss_dssp SHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTBCEESSCTTSCCBTTCGGGCCBTTBCTTTCCBEECCGGGGCH
T ss_pred CHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcccCCccccCCccccccCCCccccccccccccccccCCCCCHH
Confidence 87766655431 34679999999999999999998872 11 1123356
Q ss_pred -HHHHHHHHHhhchhhHHH---Hhhh-----cCcEEEEeCCCChHHHHHhh
Q 040894 127 -TIKKRLNVYSESTLPVIN---YYSS-----KGKVRKIDAGRPIEEVFDEI 168 (169)
Q Consensus 127 -~~~~~~~~~~~~~~~~~~---~~~~-----~~~~~~id~~~~~~~v~~~i 168 (169)
.+.+++..|.+...++.+ .|.. ...+++||+++++++|+++|
T Consensus 168 ~~i~~rl~~~~~~~~p~~~~~~~y~~~a~~~~~~~~~ida~~~~~~v~~~i 218 (223)
T 2xb4_A 168 GAINKRHDIYYNTVDGTLAAAYYYKNMAAKEGFVYIELDGEGSIDSIKDTL 218 (223)
T ss_dssp HHHHHHHHHHTCTTTSHHHHHHHHHTTHHHHTCEEEEEETTSCHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHhhHHHHhhhhhccCCeEEEEECCCCHHHHHHHH
Confidence 788889999999888777 7765 45789999999999999887
No 12
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=99.96 E-value=4.9e-27 Score=155.93 Aligned_cols=167 Identities=45% Similarity=0.779 Sum_probs=135.6
Q ss_pred CCCCChhHHHHHHHHHhCCceechhHHHHHHHhcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHcC--CCceEEEeCC
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHLSAGDLLEAEAESGSNDGKMIREYKKEGKLVPSEIIVKLLQKAMQES--QNKNFVIDGF 78 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~i~d~~ 78 (169)
+|||||||+++.|++.+++.+++.|++++.....++..+..+++++..+...+.+.....+...+... .+.++|+||+
T Consensus 17 ~~GsGKsT~~~~La~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~i~~~~~~~~~vi~d~~ 96 (196)
T 2c95_A 17 GPGSGKGTQCEKIVQKYGYTHLSTGDLLRSEVSSGSARGKKLSEIMEKGQLVPLETVLDMLRDAMVAKVNTSKGFLIDGY 96 (196)
T ss_dssp CTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHTTTCSCEEEESC
T ss_pred CCCCCHHHHHHHHHHHhCCeEEcHHHHHHHHHHcCChHHHHHHHHHHcCCcCCHHHHHHHHHHHHHhccccCCcEEEeCC
Confidence 69999999999999999999999999999877777788888888887787888877777776665532 3678999999
Q ss_pred CCChHHHHHHHhhcCCCCCEEEEEEcCHHHHHHHHhcCC--CCCCCCcHHHHHHHHHHHhhchhhHHHHhhhcCcEEEEe
Q 040894 79 PRNEENLSAAENILKIEPNAVLVFDCSEEEMTRRILSRN--QGRVDDKIDTIKKRLNVYSESTLPVINYYSSKGKVRKID 156 (169)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id 156 (169)
|........+.. ....++.+|||++|++++.+|+..|. .++.++..+.+.+++..|.....+..+.|...+.+++||
T Consensus 97 ~~~~~~~~~~~~-~~~~~~~vi~l~~~~e~~~~R~~~R~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~Id 175 (196)
T 2c95_A 97 PREVQQGEEFER-RIGQPTLLLYVDAGPETMTQRLLKRGETSGRVDDNEETIKKRLETYYKATEPVIAFYEKRGIVRKVN 175 (196)
T ss_dssp CCSHHHHHHHHH-HTCCCSEEEEEECCHHHHHHHHHHHHTSSSCGGGSHHHHHHHHHHHHHHTHHHHHHHHHHTCEEEEE
T ss_pred CCCHHHHHHHHH-hcCCCCEEEEEECCHHHHHHHHHccCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcEEEEE
Confidence 998877766655 45679999999999999999998872 244445566777888888877777766676555677899
Q ss_pred CCCChHHHHHhh
Q 040894 157 AGRPIEEVFDEI 168 (169)
Q Consensus 157 ~~~~~~~v~~~i 168 (169)
++.++++++++|
T Consensus 176 ~~~~~e~v~~~i 187 (196)
T 2c95_A 176 AEGSVDSVFSQV 187 (196)
T ss_dssp CCSCHHHHHHHH
T ss_pred CCCCHHHHHHHH
Confidence 999999999876
No 13
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=99.96 E-value=7.9e-27 Score=154.55 Aligned_cols=168 Identities=50% Similarity=0.831 Sum_probs=138.5
Q ss_pred CCCCChhHHHHHHHHHhCCceechhHHHHHHHhcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCCceEEEeCCCC
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHLSAGDLLEAEAESGSNDGKMIREYKKEGKLVPSEIIVKLLQKAMQESQNKNFVIDGFPR 80 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~d~~~~ 80 (169)
+|||||||+++.|++.+++.+++.|++++.....++..+..+.+++..+...+.......+...+....+..+|+||+|.
T Consensus 14 ~~GsGKsT~~~~L~~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~i~~~~~~~vi~d~~~~ 93 (194)
T 1qf9_A 14 GPGSGKGTQCANIVRDFGWVHLSAGDLLRQEQQSGSKDGEMIATMIKNGEIVPSIVTVKLLKNAIDANQGKNFLVDGFPR 93 (194)
T ss_dssp STTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCTTHHHHHHHHHTTCCCCHHHHHHHHHHHHHTSTTCCEEEETCCC
T ss_pred CCCCCHHHHHHHHHHHhCCeEeeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhcCCCCEEEeCcCC
Confidence 69999999999999999999999999999887678888889999988888888887788888777654577899999999
Q ss_pred ChHHHHHHHhh--cCCCCCEEEEEEcCHHHHHHHHhcCC--CCCCCCcHHHHHHHHHHHhhchhhHHHHhhhcCcEEEEe
Q 040894 81 NEENLSAAENI--LKIEPNAVLVFDCSEEEMTRRILSRN--QGRVDDKIDTIKKRLNVYSESTLPVINYYSSKGKVRKID 156 (169)
Q Consensus 81 ~~~~~~~~~~~--~~~~~~~~i~l~~~~~~~~~R~~~R~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id 156 (169)
.......+... ....++.+|||++|++++.+|+..|. .++.++..+.+.+++..|.....+..+.|...+.+++||
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~vi~l~~~~e~~~~R~~~R~~~~~r~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~id 173 (194)
T 1qf9_A 94 NEENNNSWEENMKDFVDTKFVLFFDCPEEVMTQRLLKRGESSGRSDDNIESIKKRFNTFNVQTKLVIDHYNKFDKVKIIP 173 (194)
T ss_dssp SHHHHHHHHHHHTTTCEEEEEEEEECCHHHHHHHHHHHHTTSCCTTCSHHHHHHHHHHHHHTHHHHHHHHHHTTCEEEEE
T ss_pred CHHHHHHHHHHHhccCCCCEEEEEECCHHHHHHHHHhccccCCCCCCCHHHHHHHHHHHHHhHHHHHHHHHhCCCEEEEE
Confidence 88776655431 12368899999999999999999882 356666677888888888877777777776656678999
Q ss_pred CCCChHHHHHhh
Q 040894 157 AGRPIEEVFDEI 168 (169)
Q Consensus 157 ~~~~~~~v~~~i 168 (169)
++.++++++++|
T Consensus 174 ~~~~~~~~~~~i 185 (194)
T 1qf9_A 174 ANRDVNEVYNDV 185 (194)
T ss_dssp CSSCHHHHHHHH
T ss_pred CCCCHHHHHHHH
Confidence 999999999876
No 14
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=99.96 E-value=4.8e-27 Score=156.32 Aligned_cols=167 Identities=43% Similarity=0.734 Sum_probs=132.6
Q ss_pred CCCCChhHHHHHHHHHhCCceechhHHHHHHHhcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHcC--CCceEEEeCC
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHLSAGDLLEAEAESGSNDGKMIREYKKEGKLVPSEIIVKLLQKAMQES--QNKNFVIDGF 78 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~i~d~~ 78 (169)
+|||||||+++.|++.+++.+++.|++++.....++..+..+.+++..+...+.+....++...+... .+..+|+||+
T Consensus 20 ~~GsGKsT~a~~L~~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~i~~~~~~~~~vi~dg~ 99 (199)
T 2bwj_A 20 GPGSGKGTQCEKLVEKYGFTHLSTGELLREELASESERSKLIRDIMERGDLVPSGIVLELLKEAMVASLGDTRGFLIDGY 99 (199)
T ss_dssp CTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHTTSCSCEEEETC
T ss_pred CCCCCHHHHHHHHHHHhCCeEEcHHHHHHHHHHhCCHHHHHHHHHHHcCCcCCHHHHHHHHHHHHhcccccCccEEEeCC
Confidence 69999999999999999999999999998887667777888888888888888877777776665432 3778999999
Q ss_pred CCChHHHHHHHhhcCCCCCEEEEEEcCHHHHHHHHhcCCC--CCCCCcHHHHHHHHHHHhhchhhHHHHhhhcCcEEEEe
Q 040894 79 PRNEENLSAAENILKIEPNAVLVFDCSEEEMTRRILSRNQ--GRVDDKIDTIKKRLNVYSESTLPVINYYSSKGKVRKID 156 (169)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id 156 (169)
|....+...+.. ....|+.+|||++|++++.+|+..|.. ++.++..+.+.+++..|.....+..+.|...+.+++||
T Consensus 100 ~~~~~~~~~l~~-~~~~~~~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~id 178 (199)
T 2bwj_A 100 PREVKQGEEFGR-RIGDPQLVICMDCSADTMTNRLLQMSRSSLPVDDTTKTIAKRLEAYYRASIPVIAYYETKTQLHKIN 178 (199)
T ss_dssp CSSHHHHHHHHH-HTCCCSEEEEEECCHHHHHHHHHHTCCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSEEEEEE
T ss_pred CCCHHHHHHHHH-hcCCCCEEEEEECCHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 998877766665 445789999999999999999998822 22222345666777777777766666666555678899
Q ss_pred CCCChHHHHHhh
Q 040894 157 AGRPIEEVFDEI 168 (169)
Q Consensus 157 ~~~~~~~v~~~i 168 (169)
++.++++++++|
T Consensus 179 ~~~~~e~v~~~i 190 (199)
T 2bwj_A 179 AEGTPEDVFLQL 190 (199)
T ss_dssp TTSCHHHHHHHH
T ss_pred CCCCHHHHHHHH
Confidence 999999999876
No 15
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=99.96 E-value=1.5e-26 Score=154.23 Aligned_cols=164 Identities=35% Similarity=0.658 Sum_probs=133.1
Q ss_pred CCCCChhHHHHHHHHHhCCceechhHHHHHHHhcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHcC-CCceEEEeCCC
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHLSAGDLLEAEAESGSNDGKMIREYKKEGKLVPSEIIVKLLQKAMQES-QNKNFVIDGFP 79 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~i~d~~~ 79 (169)
||||||||+++.|++.+++++++.|++++.....++..+..+++++..+...+.+.....+...+... .+.++|+||+|
T Consensus 28 ~~GsGKST~a~~La~~l~~~~i~~d~~~r~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vIldg~~ 107 (201)
T 2cdn_A 28 PPGAGKGTQAVKLAEKLGIPQISTGELFRRNIEEGTKLGVEAKRYLDAGDLVPSDLTNELVDDRLNNPDAANGFILDGYP 107 (201)
T ss_dssp CTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHHTTCHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSGGGTTCEEEESCC
T ss_pred CCCCCHHHHHHHHHHHhCCcEEehhHHHHHHHHcCChHHHHHHHHHHcCCcccHHHHHHHHHHHHhcccCCCeEEEECCC
Confidence 69999999999999999999999999999877777778888888888888888887777777665432 25679999999
Q ss_pred CChHHHHHHHhh---cCCCCCEEEEEEcCHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHhhchhhHHHHhhhcCcEEEEe
Q 040894 80 RNEENLSAAENI---LKIEPNAVLVFDCSEEEMTRRILSRNQGRVDDKIDTIKKRLNVYSESTLPVINYYSSKGKVRKID 156 (169)
Q Consensus 80 ~~~~~~~~~~~~---~~~~~~~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id 156 (169)
....+...+... ....|+.+|+|++|++++.+|+..| +++.+..+.+.+++..|.....+..+.| ...+++||
T Consensus 108 ~~~~~~~~l~~~l~~~~~~~~~vi~l~~~~e~~~~Rl~~R--~r~~~~~e~~~~r~~~~~~~~~~~~~~~--~~~~~~Id 183 (201)
T 2cdn_A 108 RSVEQAKALHEMLERRGTDIDAVLEFRVSEEVLLERLKGR--GRADDTDDVILNRMKVYRDETAPLLEYY--RDQLKTVD 183 (201)
T ss_dssp CSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHHH--CCTTCSHHHHHHHHHHHHHHTTTHHHHT--TTTEEEEE
T ss_pred CCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcC--CCCCCCHHHHHHHHHHHHHhhHHHHHHh--cCcEEEEe
Confidence 887665544321 3456899999999999999999988 6666677788888888887777766666 34678899
Q ss_pred CCCChHHHHHhh
Q 040894 157 AGRPIEEVFDEI 168 (169)
Q Consensus 157 ~~~~~~~v~~~i 168 (169)
++.++++++++|
T Consensus 184 ~~~~~eev~~~I 195 (201)
T 2cdn_A 184 AVGTMDEVFARA 195 (201)
T ss_dssp CCSCHHHHHHHH
T ss_pred CCCCHHHHHHHH
Confidence 999999999886
No 16
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=99.95 E-value=6.2e-26 Score=151.46 Aligned_cols=167 Identities=45% Similarity=0.850 Sum_probs=134.5
Q ss_pred CCCCChhHHHHHHHHHhCCceechhHHHHHHHh-cCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHcC--CC-ceEEEe
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHLSAGDLLEAEAE-SGSNDGKMIREYKKEGKLVPSEIIVKLLQKAMQES--QN-KNFVID 76 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i~~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~-~~~i~d 76 (169)
+|||||||+++.|++.+|+.+++.|++++.... .++..+..++.++..+...+......++...+... .+ ..+|+|
T Consensus 23 ~~GsGKsT~~~~L~~~~g~~~i~~d~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~i~~~l~~g~~~~i~d 102 (203)
T 1ukz_A 23 GPGAGKGTQCEKLVKDYSFVHLSAGDLLRAEQGRAGSQYGELIKNCIKEGQIVPQEITLALLRNAISDNVKANKHKFLID 102 (203)
T ss_dssp STTSSHHHHHHHHHHHSSCEEEEHHHHHHHHHHSTTCSCHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCCCHHHHHHHHHHHcCceEEeHHHHHHHHHhccCCHHHHHHHHHHHcCCcCCHHHHHHHHHHHHHhhhccCCCeEEEe
Confidence 699999999999999999999999999988654 46777888888887787788776666665554321 13 689999
Q ss_pred CCCCChHHHHHHHhhcCCCCCEEEEEEcCHHHHHHHHhcCC--CCCCCCcHHHHHHHHHHHhhchhhHHHHhhhcCcEEE
Q 040894 77 GFPRNEENLSAAENILKIEPNAVLVFDCSEEEMTRRILSRN--QGRVDDKIDTIKKRLNVYSESTLPVINYYSSKGKVRK 154 (169)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (169)
|+|........+.. ....++.+|||++|++++.+|+..|. .++..+..+.+.+++..|.....+..+.|...+.+++
T Consensus 103 g~~~~~~~~~~~~~-~~~~~~~~i~l~~~~e~~~~Rl~~R~~~~~~~~~~~e~~~~r~~~~~~~~~~~~~~~~~~~~vi~ 181 (203)
T 1ukz_A 103 GFPRKMDQAISFER-DIVESKFILFFDCPEDIMLERLLERGKTSGRSDDNIESIKKRFNTFKETSMPVIEYFETKSKVVR 181 (203)
T ss_dssp TCCCSHHHHHHHHH-HTCCCSEEEEEECCHHHHHHHHHHHHHHHCCTTCSHHHHHHHHHHHHHTTHHHHHHHHTTTCEEE
T ss_pred CCCCCHHHHHHHHH-hcCCCCEEEEEECCHHHHHHHHHhccccCCCCCCCHHHHHHHHHHHHHhhHHHHHHHHhcCcEEE
Confidence 99998877666655 45568999999999999999998871 2455567788888888888888888777766667778
Q ss_pred EeCCCChHHHHHhh
Q 040894 155 IDAGRPIEEVFDEI 168 (169)
Q Consensus 155 id~~~~~~~v~~~i 168 (169)
||++.++++++++|
T Consensus 182 id~~~~~e~v~~~i 195 (203)
T 1ukz_A 182 VRCDRSVEDVYKDV 195 (203)
T ss_dssp EECSSCHHHHHHHH
T ss_pred EECCCCHHHHHHHH
Confidence 99999999999886
No 17
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=99.95 E-value=5.8e-26 Score=150.58 Aligned_cols=168 Identities=46% Similarity=0.852 Sum_probs=132.8
Q ss_pred CCCCChhHHHHHHHHHhCCceechhHHHHHHHhc-CCcchHHHHHHHHcCCCCCHHHHHHHHHHHHH----cC-CCceEE
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHLSAGDLLEAEAES-GSNDGKMIREYKKEGKLVPSEIIVKLLQKAMQ----ES-QNKNFV 74 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i~~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~-~~~~~i 74 (169)
+|||||||+++.|++.+++.+++.|++++....+ ++..+..++.++..+...+......++...+. .. .+..+|
T Consensus 11 ~~GsGKsT~a~~L~~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~vi 90 (196)
T 1tev_A 11 GPGAGKGTQCARIVEKYGYTHLSAGELLRDERKNPDSQYGELIEKYIKEGKIVPVEITISLLKREMDQTMAANAQKNKFL 90 (196)
T ss_dssp CTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHCTTSTTHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHCTTCCEEE
T ss_pred CCCCCHHHHHHHHHHHhCCeEEeHHHHHHHHHhccCChHHHHHHHHHHCCCcCCHHHHHHHHHHHHHhhhccccCCCeEE
Confidence 6999999999999999999999999999887654 55667888888877777777665554443332 22 267899
Q ss_pred EeCCCCChHHHHHHHhh--cCCCCCEEEEEEcCHHHHHHHHhcC--CCCCCCCcHHHHHHHHHHHhhchhhHHHHhhhcC
Q 040894 75 IDGFPRNEENLSAAENI--LKIEPNAVLVFDCSEEEMTRRILSR--NQGRVDDKIDTIKKRLNVYSESTLPVINYYSSKG 150 (169)
Q Consensus 75 ~d~~~~~~~~~~~~~~~--~~~~~~~~i~l~~~~~~~~~R~~~R--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (169)
+||+|........|... ....++.+|||++|++++.+|+.+| ..+++++..+.+.+++..|.....+..++|...+
T Consensus 91 ~dg~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~e~~~~R~~~R~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~ 170 (196)
T 1tev_A 91 IDGFPRNQDNLQGWNKTMDGKADVSFVLFFDCNNEICIERCLERGKSSGRSDDNRESLEKRIQTYLQSTKPIIDLYEEMG 170 (196)
T ss_dssp EESCCCSHHHHHHHHHHHTTTCEEEEEEEEECCHHHHHHHHHHHHHTSSCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred EeCCCCCHHHHHHHHHHhcccCCCCEEEEEECCHHHHHHHHHcccccCCCCCCCHHHHHHHHHHHHHhHHHHHHHHHhcC
Confidence 99999987765544431 2235789999999999999999887 3467777778888899999998888877787666
Q ss_pred cEEEEeCCCChHHHHHhh
Q 040894 151 KVRKIDAGRPIEEVFDEI 168 (169)
Q Consensus 151 ~~~~id~~~~~~~v~~~i 168 (169)
.+++||++.++++++++|
T Consensus 171 ~~~~id~~~~~~~v~~~i 188 (196)
T 1tev_A 171 KVKKIDASKSVDEVFDEV 188 (196)
T ss_dssp CEEEEETTSCHHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHH
Confidence 788999999999999887
No 18
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=99.95 E-value=8.2e-26 Score=153.35 Aligned_cols=165 Identities=30% Similarity=0.603 Sum_probs=135.5
Q ss_pred CCCCChhHHHHHHHHHhCCceechhHHHHHHHhcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCCceEEEeCCCC
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHLSAGDLLEAEAESGSNDGKMIREYKKEGKLVPSEIIVKLLQKAMQESQNKNFVIDGFPR 80 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~d~~~~ 80 (169)
||||||||+++.|++.+++.+++.|++++.....++..+..+++++..+...+++.....+...+....+..+|+|+|+.
T Consensus 15 ~~GsGKsT~a~~La~~l~~~~i~~d~~~~~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~vid~~~~ 94 (227)
T 1zd8_A 15 APGSGKGTVSSRITTHFELKHLSSGDLLRDNMLRGTEIGVLAKAFIDQGKLIPDDVMTRLALHELKNLTQYSWLLDGFPR 94 (227)
T ss_dssp CTTSSHHHHHHHHHHHSSSEEEEHHHHHHHHHHHTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHTCTTSCEEEESCCC
T ss_pred CCCCCHHHHHHHHHHHcCCeEEechHHHHHhhhcCChHHHHHHHHHHcCCcCCHHHHHHHHHHHHhcccCCCEEEeCCCC
Confidence 69999999999999999999999999999887778888888999888888888887777676666542356799999998
Q ss_pred ChHHHHHHHhhcCCCCCEEEEEEcCHHHHHHHHhcCC----CC-------------------------CCCCcHHHHHHH
Q 040894 81 NEENLSAAENILKIEPNAVLVFDCSEEEMTRRILSRN----QG-------------------------RVDDKIDTIKKR 131 (169)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~----~~-------------------------~~~~~~~~~~~~ 131 (169)
+..+...+.. . ..++.+|||++|++++.+|+..|. ++ |.++..+.+.++
T Consensus 95 ~~~~~~~l~~-~-~~~~~vi~L~~~~~~~~~R~~~R~~~~~~~~~y~~~~~pp~~~~~~~~~~~~l~~r~~~~~e~~~~r 172 (227)
T 1zd8_A 95 TLPQAEALDR-A-YQIDTVINLNVPFEVIKQRLTARWIHPASGRVYNIEFNPPKTVGIDDLTGEPLIQREDDKPETVIKR 172 (227)
T ss_dssp SHHHHHHHHT-T-SCCCEEEEEECCHHHHHHHHTCEEEETTTTEEEETTTBCCSSTTBCTTTCCBCBCCGGGSHHHHHHH
T ss_pred CHHHHHHHHH-h-cCCCEEEEEECCHHHHHHHHHcCcCCCccCCccccccCCCCcccccccccccccCCCCCCHHHHHHH
Confidence 8776655553 2 568999999999999999998761 12 334567788889
Q ss_pred HHHHhhchhhHHHHhhhcCcEEEEeCCCChHHHHHhh
Q 040894 132 LNVYSESTLPVINYYSSKGKVRKIDAGRPIEEVFDEI 168 (169)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~v~~~i 168 (169)
+..|.....++.++|.....++.||++ ++++++++|
T Consensus 173 ~~~y~~~~~~l~~~y~~~~~~~~id~~-~~~~v~~~i 208 (227)
T 1zd8_A 173 LKAYEDQTKPVLEYYQKKGVLETFSGT-ETNKIWPYV 208 (227)
T ss_dssp HHHHHHHHHHHHHHHHHHTCEEEEECS-SHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccCCEEEEeCC-CHHHHHHHH
Confidence 999999888888888766678999999 999999876
No 19
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=99.94 E-value=1.3e-25 Score=147.97 Aligned_cols=164 Identities=37% Similarity=0.718 Sum_probs=130.4
Q ss_pred CCCCChhHHHHHHHHHhCCceechhHHHHHHHhcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCCceEEEeCCCC
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHLSAGDLLEAEAESGSNDGKMIREYKKEGKLVPSEIIVKLLQKAMQESQNKNFVIDGFPR 80 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~d~~~~ 80 (169)
||||||||+++.|++++|+.+++.|++++..+..++..+..+++++..+...++......+...+.. ++|+||++.
T Consensus 12 ~~GsGKST~~~~La~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~l~~----~~i~dg~~~ 87 (186)
T 3cm0_A 12 PPGAGKGTQASRLAQELGFKKLSTGDILRDHVARGTPLGERVRPIMERGDLVPDDLILELIREELAE----RVIFDGFPR 87 (186)
T ss_dssp CTTSCHHHHHHHHHHHHTCEEECHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHCCS----EEEEESCCC
T ss_pred CCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHHcCChHHHHHHHHHHcCCcCCHHHHHHHHHHHhcC----CEEEeCCCC
Confidence 6999999999999999999999999999987777777888888988888888887777666665542 389999988
Q ss_pred ChHHHHHHHhh---cCCCCCEEEEEEcCHHHHHHHHhcCC--CCCCCCcHHHHHHHHHHHhhchhhHHHHhhhcCcEEEE
Q 040894 81 NEENLSAAENI---LKIEPNAVLVFDCSEEEMTRRILSRN--QGRVDDKIDTIKKRLNVYSESTLPVINYYSSKGKVRKI 155 (169)
Q Consensus 81 ~~~~~~~~~~~---~~~~~~~~i~l~~~~~~~~~R~~~R~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 155 (169)
...+...+... ....++.+|||++|++++.+|+..|. .++.++..+.+.+++..|.....+..+.|...+.+++|
T Consensus 88 ~~~~~~~l~~~l~~~~~~~~~vi~l~~~~e~~~~R~~~R~~~~~r~~~~~~~~~~r~~~~~~~~~~l~~~~~~~~~~~~i 167 (186)
T 3cm0_A 88 TLAQAEALDRLLSETGTRLLGVVLVEVPEEELVRRILRRAELEGRSDDNEETVRRRLEVYREKTEPLVGYYEARGVLKRV 167 (186)
T ss_dssp SHHHHHHHHHHHHHTTEEEEEEEEEECCHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred CHHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcEEEE
Confidence 87654433221 23357899999999999999998872 24666677778888888877766666677655557899
Q ss_pred eCCCChHHHHHhh
Q 040894 156 DAGRPIEEVFDEI 168 (169)
Q Consensus 156 d~~~~~~~v~~~i 168 (169)
|++.++++++++|
T Consensus 168 d~~~~~~~v~~~i 180 (186)
T 3cm0_A 168 DGLGTPDEVYARI 180 (186)
T ss_dssp ECCSCHHHHHHHH
T ss_pred ECCCCHHHHHHHH
Confidence 9999999999876
No 20
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=99.94 E-value=2.4e-25 Score=150.61 Aligned_cols=165 Identities=33% Similarity=0.684 Sum_probs=131.2
Q ss_pred CCCCChhHHHHHHHHHhCCceechhHHHHHHHhcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHcC--CCceEEEeCC
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHLSAGDLLEAEAESGSNDGKMIREYKKEGKLVPSEIIVKLLQKAMQES--QNKNFVIDGF 78 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~i~d~~ 78 (169)
||||||||+++.|++++++.+++.|++++.....++..+..+++++..+...+++.....+...+... .+.++|+|||
T Consensus 13 ~~GsGKsT~~~~La~~l~~~~i~~d~~~~~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~vidg~ 92 (222)
T 1zak_A 13 APASGKGTQCELIKTKYQLAHISAGDLLRAEIAAGSENGKRAKEFMEKGQLVPDEIVVNMVKERLRQPDAQENGWLLDGY 92 (222)
T ss_dssp STTSSHHHHHHHHHHHHCCEECCHHHHHHHHHHHTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHSHHHHHTCEEEESC
T ss_pred CCCCCHHHHHHHHHHHhCCceecHHHHHHHHHHcCCchhHHHHHHHHcCCcCCHHHHHHHHHHHHhhccccCCcEEEECC
Confidence 79999999999999999999999999999876778888999999998888888887777666655421 1456888999
Q ss_pred CCChHHHHHHHhhcCCCCCEEEEEEcCHHHHHHHHhcCC----CCC---------------------CCCcHHHHHHHHH
Q 040894 79 PRNEENLSAAENILKIEPNAVLVFDCSEEEMTRRILSRN----QGR---------------------VDDKIDTIKKRLN 133 (169)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~----~~~---------------------~~~~~~~~~~~~~ 133 (169)
|....+...+.. ....|+++|||++|++++.+|+..|. +|+ ..+..+.+.+++.
T Consensus 93 ~~~~~~~~~l~~-~~~~~~~vi~L~~~~~~~~~R~~~r~~~~~~g~~~~~~~~pp~~~~~~~~l~~r~~d~~~~i~~Rl~ 171 (222)
T 1zak_A 93 PRSYSQAMALET-LEIRPDTFILLDVPDELLVERVVGRRLDPVTGKIYHLKYSPPENEEIASRLTQRFDDTEEKVKLRLE 171 (222)
T ss_dssp CCSHHHHHHHHT-TTCCCSEEEEEECCHHHHHHHHTTEEECTTTCCEEESSSSCCCSSGGGGGCBCCTTCCTTHHHHHHH
T ss_pred CCCHHHHHHHHH-cCCCCCEEEEEECCHHHHHHHHHcCCcccccCCccccccCCCcccccccccccCCCCCHHHHHHHHH
Confidence 998877776665 55678999999999999999998761 111 2334566777888
Q ss_pred HHhhchhhHHHHhhhcCcEEEEeCCCChHHHHHhh
Q 040894 134 VYSESTLPVINYYSSKGKVRKIDAGRPIEEVFDEI 168 (169)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~id~~~~~~~v~~~i 168 (169)
.|.....+..+.|.. .+++||+++++++++++|
T Consensus 172 ~~~~~~~~l~~~y~~--~~~~Id~~~~~~ev~~~I 204 (222)
T 1zak_A 172 TYYQNIESLLSTYEN--IIVKVQGDATVDAVFAKI 204 (222)
T ss_dssp HHHHHHHHHHHTTCC--CEEEEECSSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh--cEEEEECCCCHHHHHHHH
Confidence 887776676666643 478899999999999886
No 21
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=99.86 E-value=4.9e-20 Score=120.04 Aligned_cols=156 Identities=15% Similarity=0.177 Sum_probs=102.0
Q ss_pred CCCCChhHHHHHHHHHhCCceechhHHHHHHHhcC----CcchHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCCceEEEe
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHLSAGDLLEAEAESG----SNDGKMIREYKKEGKLVPSEIIVKLLQKAMQESQNKNFVID 76 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i~~d~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~d 76 (169)
||||||||+++.| +.+|+.+++.|++++...... .........+... .........+...+....+..+|+|
T Consensus 9 ~~GsGKsT~a~~L-~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~vi~d 84 (179)
T 3lw7_A 9 MPGSGKSEFAKLL-KERGAKVIVMSDVVRKRYSIEAKPGERLMDFAKRLREI---YGDGVVARLCVEELGTSNHDLVVFD 84 (179)
T ss_dssp CTTSCHHHHHHHH-HHTTCEEEEHHHHHHHHHHHHC---CCHHHHHHHHHHH---HCTTHHHHHHHHHHCSCCCSCEEEE
T ss_pred CCCCCHHHHHHHH-HHCCCcEEEHhHHHHHHHHhcCCChhHHHHHHHHHHhh---CCHHHHHHHHHHHHHhcCCCeEEEe
Confidence 7999999999999 999999999999998875432 1222223222221 0112234445555533347889999
Q ss_pred CCCCChHHHHHHHhhcCCCCCEEEEEEcCHHHHHHHHhcCCCCCC--CCcHHHHHHHHHHHhhchhhHHHHhhhcCcEEE
Q 040894 77 GFPRNEENLSAAENILKIEPNAVLVFDCSEEEMTRRILSRNQGRV--DDKIDTIKKRLNVYSESTLPVINYYSSKGKVRK 154 (169)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (169)
|+ ....+...+.. ....++.+|||++|++++.+|+..| +++ ....+.+.+++....+.. . ..+....+ ++
T Consensus 85 g~-~~~~~~~~l~~-~~~~~~~~i~l~~~~~~~~~R~~~R--~~~~~~~~~~~~~~r~~~~~~~~--~-~~~~~~ad-~v 156 (179)
T 3lw7_A 85 GV-RSLAEVEEFKR-LLGDSVYIVAVHSPPKIRYKRMIER--LRSDDSKEISELIRRDREELKLG--I-GEVIAMAD-YI 156 (179)
T ss_dssp CC-CCHHHHHHHHH-HHCSCEEEEEEECCHHHHHHHHHTC--C----CCCHHHHHHHHHHHHHHT--H-HHHHHTCS-EE
T ss_pred CC-CCHHHHHHHHH-HhCCCcEEEEEECCHHHHHHHHHhc--cCCCCcchHHHHHHHHHhhhccC--h-HhHHHhCC-EE
Confidence 98 77777777766 5557889999999999999999998 432 244555555543222211 1 11222334 56
Q ss_pred EeCCCChHHHHHhh
Q 040894 155 IDAGRPIEEVFDEI 168 (169)
Q Consensus 155 id~~~~~~~v~~~i 168 (169)
|+++.+++++.++|
T Consensus 157 Id~~~~~~~~~~~i 170 (179)
T 3lw7_A 157 ITNDSNYEEFKRRC 170 (179)
T ss_dssp EECCSCHHHHHHHH
T ss_pred EECCCCHHHHHHHH
Confidence 77878999999876
No 22
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=99.86 E-value=2.6e-19 Score=122.72 Aligned_cols=165 Identities=28% Similarity=0.604 Sum_probs=125.3
Q ss_pred CCCCChhHHHHHHHHHhCCceechhHHHHHHHhcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCCceEEEeCCCC
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHLSAGDLLEAEAESGSNDGKMIREYKKEGKLVPSEIIVKLLQKAMQESQNKNFVIDGFPR 80 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~d~~~~ 80 (169)
||||||||+++.|++.+|+..++.|+++......+...+..+..++..+...+.....+.+...+....+.+++++|++.
T Consensus 35 ~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~~~~~~~il~g~~~ 114 (246)
T 2bbw_A 35 PPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKASTEVGEMAKQYIEKSLLVPDHVITRLMMSELENRRGQHWLLDGFPR 114 (246)
T ss_dssp CTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTCTTSCEEEESCCC
T ss_pred CCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHhcCChHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCCeEEEECCCC
Confidence 79999999999999999999999999888754444555666666677777778776667666655433356788999987
Q ss_pred ChHHHHHHHhhcCCCCCEEEEEEcCHHHHHHHHhcC----CCC-------------------------CCCCcHHHHHHH
Q 040894 81 NEENLSAAENILKIEPNAVLVFDCSEEEMTRRILSR----NQG-------------------------RVDDKIDTIKKR 131 (169)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R----~~~-------------------------~~~~~~~~~~~~ 131 (169)
...+...+.. ...++.+|+|++|++++.+|+..| .++ ...+..+.+.++
T Consensus 115 ~~~~~~~l~~--~~~~~~vi~L~~~~~~~l~r~~~r~~~~lSgrv~al~~~~P~~lllD~~~~EP~~~ld~~~~~~i~~~ 192 (246)
T 2bbw_A 115 TLGQAEALDK--ICEVDLVISLNIPFETLKDRLSRRWIHPPSGRVYNLDFNPPHVHGIDDVTGEPLVQQEDDKPEAVAAR 192 (246)
T ss_dssp SHHHHHHHHT--TCCCCEEEEEECCHHHHHHHHHTEEEETTTTEEEETTTSCCSSTTBCTTTCCBCBCCGGGSHHHHHHH
T ss_pred CHHHHHHHHh--hcCCCEEEEEECCHHHHHHHHHcCCCcCCCCCccccccCCCcccccccccccccccCCCCcHHHHHHH
Confidence 7654444432 245789999999999999998765 112 223455677788
Q ss_pred HHHHhhchhhHHHHhhhcCcEEEEeCCCChHHHHHhh
Q 040894 132 LNVYSESTLPVINYYSSKGKVRKIDAGRPIEEVFDEI 168 (169)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~v~~~i 168 (169)
+..|.+...++.++|...+.++.+|++.+ ++|+++|
T Consensus 193 l~~~~~~~~~v~~~~~~~~~~~~id~~~~-~~v~~~i 228 (246)
T 2bbw_A 193 LRQYKDVAKPVIELYKSRGVLHQFSGTET-NKIWPYV 228 (246)
T ss_dssp HHHHHHHHHHHHHHHHHTTCEEEEECSCH-HHHHHHH
T ss_pred HHHHHHhHHHHHHHHhhcCcEEEECCCCc-HHHHHHH
Confidence 88888888888888877677899999998 9998876
No 23
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=99.84 E-value=7.9e-20 Score=121.73 Aligned_cols=155 Identities=20% Similarity=0.317 Sum_probs=90.5
Q ss_pred CCCCChhHHHHHHHHHh--CCceechhHHHHHHHhcCCcchHHHHHHHHcCCCCCHHHH--------HHH----HHHHHH
Q 040894 1 GPGSGKSTQCSKIAKHL--GFRHLSAGDLLEAEAESGSNDGKMIREYKKEGKLVPSEII--------VKL----LQKAMQ 66 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~--~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~----l~~~~~ 66 (169)
+.||||||+++.|++++ |..++-. .. +.++..+..+++++.++........ .+. +...+.
T Consensus 10 ~dGsGKsTq~~~L~~~L~~~~~v~~~-----~e-P~~t~~g~~ir~~l~~~~~~~~~~~~lLf~a~R~~~~~~~i~p~l~ 83 (205)
T 4hlc_A 10 PEGSGKTTVINEVYHRLVKDYDVIMT-----RE-PGGVPTGEEIRKIVLEGNDMDIRTEAMLFAASRREHLVLKVIPALK 83 (205)
T ss_dssp CTTSCHHHHHHHHHHHHTTTSCEEEE-----ES-STTCHHHHHHHHHHHSSCCCCHHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHCCCCEEEe-----eC-CCCChHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57999999999999998 3443332 11 2356677888887766544433221 112 223333
Q ss_pred cCCCceEEEeCCCC------------ChHHHHHHHhh--cCCCCCEEEEEEcCHHHHHHHHhcCCCCCCCCcHHHHHHHH
Q 040894 67 ESQNKNFVIDGFPR------------NEENLSAAENI--LKIEPNAVLVFDCSEEEMTRRILSRNQGRVDDKIDTIKKRL 132 (169)
Q Consensus 67 ~~~~~~~i~d~~~~------------~~~~~~~~~~~--~~~~~~~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~ 132 (169)
. +..+|+|+|.. .......+... ....||++|||++|++++.+|+.+| ++..+..+. .-
T Consensus 84 ~--g~~Vi~DRy~~S~~ayq~~~~~~~~~~~~~l~~~~~~~~~PDl~i~Ld~~~e~~~~Ri~~r--~~~~dr~e~---~~ 156 (205)
T 4hlc_A 84 E--GKVVLCDRYIDSSLAYQGYARGIGVEEVRALNEFAINGLYPDLTIYLNVSAEVGRERIIKN--SRDQNRLDQ---ED 156 (205)
T ss_dssp T--TCEEEEECCHHHHHHHTTTTTSSCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHC---------CCH---HH
T ss_pred c--CCEEEecCcccchHHHHhccccchHHHHHHHHHHHhcCCCCCEEeeeCCCHHHHHHHHHhc--CCcccchhc---cC
Confidence 3 77888998721 12222222211 4568999999999999999999988 332221110 01
Q ss_pred HHHhhchhhHHHHhh--hcCcEEEEeCCCChHHHHHhh
Q 040894 133 NVYSESTLPVINYYS--SKGKVRKIDAGRPIEEVFDEI 168 (169)
Q Consensus 133 ~~~~~~~~~~~~~~~--~~~~~~~id~~~~~~~v~~~i 168 (169)
..|.+.+...+..+. ....|++||+++++++|.++|
T Consensus 157 ~~f~~~v~~~Y~~l~~~~~~~~~~IDa~~~~e~V~~~i 194 (205)
T 4hlc_A 157 LKFHEKVIEGYQEIIHNESQRFKSVNADQPLENVVEDT 194 (205)
T ss_dssp HHHHHHHHHHHHHHHHSCCTTEEEEETTSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHH
Confidence 122233333322222 234699999999999998876
No 24
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=99.81 E-value=3.8e-19 Score=119.05 Aligned_cols=154 Identities=22% Similarity=0.284 Sum_probs=96.9
Q ss_pred CCCCChhHHHHHHHHHhC---CceechhHHHHHHHhcCCcchHHHHHHHHcCC---CCCHHHH-------HHHH----HH
Q 040894 1 GPGSGKSTQCSKIAKHLG---FRHLSAGDLLEAEAESGSNDGKMIREYKKEGK---LVPSEII-------VKLL----QK 63 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~---~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-------~~~l----~~ 63 (169)
++||||||+++.|+++++ +.++.. +. +.+++++..+++++..+. ..+.... .+.+ ..
T Consensus 14 ~~gsGKsT~~~~l~~~l~~~~~~v~~~----~~--p~~~~~g~~i~~~l~~~~~~~~~~~~~~llf~a~R~~~~~~~i~p 87 (213)
T 4edh_A 14 PEGAGKSTNRDYLAERLRERGIEVQLT----RE--PGGTPLAERIRELLLAPSDEPMAADTELLLMFAARAQHLAGVIRP 87 (213)
T ss_dssp STTSSHHHHHHHHHHHHHTTTCCEEEE----ES--SCSSHHHHHHHHHHHSCCSSCCCHHHHHHHHHHHHHHHHHHTHHH
T ss_pred CCCCCHHHHHHHHHHHHHHcCCCcccc----cC--CCCCHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 689999999999999985 444332 11 236677888888887653 2222221 2222 22
Q ss_pred HHHcCCCceEEEeCCC------------CChHHHHHHHhh--cCCCCCEEEEEEcCHHHHHHHHhcCC-CCCCCC-cHHH
Q 040894 64 AMQESQNKNFVIDGFP------------RNEENLSAAENI--LKIEPNAVLVFDCSEEEMTRRILSRN-QGRVDD-KIDT 127 (169)
Q Consensus 64 ~~~~~~~~~~i~d~~~------------~~~~~~~~~~~~--~~~~~~~~i~l~~~~~~~~~R~~~R~-~~~~~~-~~~~ 127 (169)
.+.. +..+|+|+|. ........+... ..+.||++|||++|++++.+|+..|. ..+.+. ..+.
T Consensus 88 ~l~~--g~~Vi~DRy~~S~~ayq~~~~g~~~~~~~~l~~~~~~~~~PDlvi~Ld~~~e~~~~Ri~~R~~~dr~E~~~~~~ 165 (213)
T 4edh_A 88 ALAR--GAVVLCDRFTDATYAYQGGGRGLPEARIAALESFVQGDLRPDLTLVFDLPVEIGLARAAARGRLDRFEQEDRRF 165 (213)
T ss_dssp HHHT--TCEEEEESCHHHHHHHTTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHCCCSSCCTTTTSCHHH
T ss_pred HHHC--CCEEEECccHhHHHHHhhhccCCCHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhcCCcCcccccHHHH
Confidence 3333 7888999861 112222222221 45789999999999999999999882 123332 2444
Q ss_pred HHHHHHHHhhchhhHHHHhhhcCcEEEEeCCCChHHHHHhh
Q 040894 128 IKKRLNVYSESTLPVINYYSSKGKVRKIDAGRPIEEVFDEI 168 (169)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~v~~~i 168 (169)
+.+....|..... .+ ...+++||+++++++|.++|
T Consensus 166 ~~rv~~~y~~l~~----~~--~~~~~vIDa~~s~eeV~~~I 200 (213)
T 4edh_A 166 FEAVRQTYLQRAA----QA--PERYQVLDAGLPLAEVQAGL 200 (213)
T ss_dssp HHHHHHHHHHHHH----HC--TTTEEEEETTSCHHHHHHHH
T ss_pred HHHHHHHHHHHHH----HC--CCcEEEEeCCCCHHHHHHHH
Confidence 4444455554321 22 34689999999999999876
No 25
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=99.80 E-value=4.7e-18 Score=112.58 Aligned_cols=150 Identities=22% Similarity=0.309 Sum_probs=91.8
Q ss_pred CCCCChhHHHHHHHHHh---CCceechhHHHHHHHhcCCcchHHHHHHHHcCCCCCHHHH----------HHHHHHHHHc
Q 040894 1 GPGSGKSTQCSKIAKHL---GFRHLSAGDLLEAEAESGSNDGKMIREYKKEGKLVPSEII----------VKLLQKAMQE 67 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~---~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~l~~~~~~ 67 (169)
+.||||||+++.|++++ |..++-. .. +.++..+..++..+......+.... ...+...+..
T Consensus 8 ~DGsGKsTq~~~L~~~L~~~g~~v~~t-----re-P~~t~~~~~ir~~l~~~~~~~~~~~ll~~a~r~~~~~~I~~~L~~ 81 (197)
T 3hjn_A 8 IDGSGKSTQIQLLAQYLEKRGKKVILK-----RE-PGGTETGEKIRKILLEEEVTPKAELFLFLASRNLLVTEIKQYLSE 81 (197)
T ss_dssp STTSSHHHHHHHHHHHHHHTTCCEEEE-----ES-SCSSHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHHHHHCCCcEEEE-----EC-CCCCcHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 47999999999999988 4554432 11 2355566666666654443333222 1223333333
Q ss_pred CCCceEEEeCCC------------CChHHHHH---HHhhcCCCCCEEEEEEcCHHHHHHHHhcCCCCCCCCcHHHHHHHH
Q 040894 68 SQNKNFVIDGFP------------RNEENLSA---AENILKIEPNAVLVFDCSEEEMTRRILSRNQGRVDDKIDTIKKRL 132 (169)
Q Consensus 68 ~~~~~~i~d~~~------------~~~~~~~~---~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~ 132 (169)
+..+|+|+|. ........ +.. ....||++|||++|+++..+|...| .+. +..+.+.+..
T Consensus 82 --g~~Vi~DRy~~S~~ayq~~~~~~~~~~i~~l~~~~~-~~~~PDl~i~Ld~~~e~~~~R~~~~--dr~-e~~ef~~rv~ 155 (197)
T 3hjn_A 82 --GYAVLLDRYTDSSVAYQGFGRNLGKEIVEELNDFAT-DGLIPDLTFYIDVDVETALKRKGEL--NRF-EKREFLERVR 155 (197)
T ss_dssp --TCEEEEESCHHHHHHHHTTTTCSCHHHHHHHHHHHH-TTCCCSEEEEEECCHHHHHHHC-----CTT-CCHHHHHHHH
T ss_pred --CCeEEecccchHHHHHHHhccCCCHHHHHHHHhhhh-cCCCCCceeecCcChHHHHHhCcCc--Ccc-ccHHHHHHHH
Confidence 7888999872 11222222 222 4578999999999999999997766 443 3344555444
Q ss_pred HHHhhchhhHHHHhhhcCcEEEEeCCCChHHHHHhh
Q 040894 133 NVYSESTLPVINYYSSKGKVRKIDAGRPIEEVFDEI 168 (169)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~v~~~i 168 (169)
..|..... . .+..+++||+++|+++|+++|
T Consensus 156 ~~y~~la~----~--~~~~~~~IDa~~~~eeV~~~I 185 (197)
T 3hjn_A 156 EGYLVLAR----E--HPERIVVLDGKRSIEEIHRDV 185 (197)
T ss_dssp HHHHHHHH----H--CTTTEEEEETTSCHHHHHHHH
T ss_pred HHHHHHHH----h--CCCCEEEEcCCCCHHHHHHHH
Confidence 55544321 1 234689999999999999887
No 26
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=99.80 E-value=8.1e-19 Score=116.63 Aligned_cols=148 Identities=18% Similarity=0.211 Sum_probs=89.0
Q ss_pred CCCCChhHHHHHHHHHhCCceechhHHHHHHHhcCCcchHHHHHHHH-cCCCCCHHHHHHHHHHHHHcCCCceEEEe---
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHLSAGDLLEAEAESGSNDGKMIREYKK-EGKLVPSEIIVKLLQKAMQESQNKNFVID--- 76 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~i~d--- 76 (169)
||||||||+++.|++.+++.+++.|+++.... +.. +..++. .+...+.......+..+.. ...+|++
T Consensus 33 ~~GsGKsTl~~~La~~l~~~~i~~d~~~~~~~--g~~----i~~~~~~~~~~~~~~~e~~~l~~l~~---~~~~vi~~gg 103 (199)
T 3vaa_A 33 YMGAGKTTLGKAFARKLNVPFIDLDWYIEERF--HKT----VGELFTERGEAGFRELERNMLHEVAE---FENVVISTGG 103 (199)
T ss_dssp CTTSCHHHHHHHHHHHHTCCEEEHHHHHHHHH--TSC----HHHHHHHHHHHHHHHHHHHHHHHHTT---CSSEEEECCT
T ss_pred CCCCCHHHHHHHHHHHcCCCEEcchHHHHHHh--CCc----HHHHHHhcChHHHHHHHHHHHHHHhh---cCCcEEECCC
Confidence 79999999999999999999999999887652 222 222221 1111222333334444332 4556665
Q ss_pred CCCCChHHHHHHHhhcCCCCCEEEEEEcCHHHHHHHHh-cCCCCCC---CCcHHHHHHHHHHHhhchhhHHHHhhhcCcE
Q 040894 77 GFPRNEENLSAAENILKIEPNAVLVFDCSEEEMTRRIL-SRNQGRV---DDKIDTIKKRLNVYSESTLPVINYYSSKGKV 152 (169)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~-~R~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (169)
|.+........+.. ++.+|||++|++++.+|+. .| ..|+ ....+.+..++..+.....+. |.. ..+
T Consensus 104 g~~~~~~~~~~l~~-----~~~vi~L~~~~e~l~~Rl~~~~-~~Rp~~~~~~~~~~~~~i~~~~~~r~~~---y~~-ad~ 173 (199)
T 3vaa_A 104 GAPCFYDNMEFMNR-----TGKTVFLNVHPDVLFRRLRIAK-QQRPILQGKEDDELMDFIIQALEKRAPF---YTQ-AQY 173 (199)
T ss_dssp TGGGSTTHHHHHHH-----HSEEEEEECCHHHHHHHHHHTG-GGCGGGTTCCHHHHHHHHHHHHHHHHHH---HTT-SSE
T ss_pred cEEccHHHHHHHHc-----CCEEEEEECCHHHHHHHHhcCC-CCCCCcCCCChhhHHHHHHHHHHHHHHH---Hhh-CCE
Confidence 33334444444443 6799999999999999998 43 1222 233334444444444433333 433 444
Q ss_pred EEEeC-CCChHHHHHhh
Q 040894 153 RKIDA-GRPIEEVFDEI 168 (169)
Q Consensus 153 ~~id~-~~~~~~v~~~i 168 (169)
+||+ +.++++++++|
T Consensus 174 -~Idt~~~s~ee~~~~I 189 (199)
T 3vaa_A 174 -IFNADELEDRWQIESS 189 (199)
T ss_dssp -EEECCCCSSHHHHHHH
T ss_pred -EEECCCCCHHHHHHHH
Confidence 5555 45999999876
No 27
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=99.80 E-value=9.2e-18 Score=110.92 Aligned_cols=149 Identities=24% Similarity=0.342 Sum_probs=92.0
Q ss_pred CCCCChhHHHHHHHHHh---CCceechhHHHHHHHhcCCcchHHHHHHHHcCCCCCHHHH-------HHH----HHHHHH
Q 040894 1 GPGSGKSTQCSKIAKHL---GFRHLSAGDLLEAEAESGSNDGKMIREYKKEGKLVPSEII-------VKL----LQKAMQ 66 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~---~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~----l~~~~~ 66 (169)
+|||||||+++.|++++ |+.+++.|. ..++..+..++.++..+...+.... ... +...+.
T Consensus 8 ~~GsGKsT~~~~L~~~l~~~g~~~i~~d~------~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~~l~~~i~~~l~ 81 (195)
T 2pbr_A 8 IDGSGKTTQAKKLYEYLKQKGYFVSLYRE------PGGTKVGEVLREILLTEELDERTELLLFEASRSKLIEEKIIPDLK 81 (195)
T ss_dssp STTSCHHHHHHHHHHHHHHTTCCEEEEES------SCSSHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCCCeEEEEeC------CCCCchHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 69999999999999998 899998752 1233345556666655544433211 122 222333
Q ss_pred cCCCceEEEeC----------CCCChH--HHHHH---HhhcCCCCCEEEEEEcCHHHHHHHHhcCCCCCCCCcHHHHHHH
Q 040894 67 ESQNKNFVIDG----------FPRNEE--NLSAA---ENILKIEPNAVLVFDCSEEEMTRRILSRNQGRVDDKIDTIKKR 131 (169)
Q Consensus 67 ~~~~~~~i~d~----------~~~~~~--~~~~~---~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~~ 131 (169)
. +..+|+|+ ++.... ....+ .. ....||.+|||++|++++.+|+.+| ++.+ ..+...+.
T Consensus 82 ~--~~~vi~dr~~~~~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~d~vi~l~~~~e~~~~Rl~~r--~~~~-~~~~~~~~ 155 (195)
T 2pbr_A 82 R--DKVVILDRFVLSTIAYQGYGKGLDVEFIKNLNEFAT-RGVKPDITLLLDIPVDIALRRLKEK--NRFE-NKEFLEKV 155 (195)
T ss_dssp T--TCEEEEESCHHHHHHHHTTTTCCCHHHHHHHHHHHH-TTCCCSEEEEEECCHHHHHHHHHTT--TCCC-CHHHHHHH
T ss_pred C--CCEEEECcchhHHHHHccccCCCCHHHHHHHHHHhh-cCCCCCEEEEEeCCHHHHHHHhhcc--Cccc-hHHHHHHH
Confidence 2 66778884 433222 22222 12 2346999999999999999999876 4433 33333322
Q ss_pred HHHHhhchhhHHHHhhhcCcEEEEeCCCChHHHHHhh
Q 040894 132 LNVYSESTLPVINYYSSKGKVRKIDAGRPIEEVFDEI 168 (169)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~v~~~i 168 (169)
...|.... ..+ ..+++||++.+++++.++|
T Consensus 156 ~~~~~~~~----~~~---~~~~~Id~~~~~~~~~~~i 185 (195)
T 2pbr_A 156 RKGFLELA----KEE---ENVVVIDASGEEEEVFKEI 185 (195)
T ss_dssp HHHHHHHH----HHS---TTEEEEETTSCHHHHHHHH
T ss_pred HHHHHHHH----hhC---CCEEEEECCCCHHHHHHHH
Confidence 23344322 112 3678999999999999876
No 28
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=99.79 E-value=5.8e-18 Score=112.14 Aligned_cols=151 Identities=21% Similarity=0.311 Sum_probs=90.9
Q ss_pred CCCCChhHHHHHHHHHh---CCceechhHHHHHHHhcCCcchHHHHHHHHcCCCCCHHHH-------HHHHHHHHHcC--
Q 040894 1 GPGSGKSTQCSKIAKHL---GFRHLSAGDLLEAEAESGSNDGKMIREYKKEGKLVPSEII-------VKLLQKAMQES-- 68 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~---~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~l~~~~~~~-- 68 (169)
||||||||+++.|++.+ |+.++..+. +.++..+..+++++..+...+.... ...+.. +...
T Consensus 8 ~~GsGKsT~~~~L~~~l~~~g~~v~~~~~------~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-i~~~l~ 80 (197)
T 2z0h_A 8 IDGSGKSTQIQLLAQYLEKRGKKVILKRE------PGGTETGEKIRKILLEEEVTPKAELFLFLASRNLLVTE-IKQYLS 80 (197)
T ss_dssp STTSSHHHHHHHHHHHHHHCCC-EEEEES------SCSSHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHH-HTTC--
T ss_pred CCCCCHHHHHHHHHHHHHHCCCeEEEeeC------CCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH-HHHHHh
Confidence 69999999999999999 988876532 2344556667766654444433221 122233 3221
Q ss_pred CCceEEEeCC----------CC--ChHHHHH---HHhhcCCCCCEEEEEEcCHHHHHHHHhcCCCCCCCCcHHHHHHHHH
Q 040894 69 QNKNFVIDGF----------PR--NEENLSA---AENILKIEPNAVLVFDCSEEEMTRRILSRNQGRVDDKIDTIKKRLN 133 (169)
Q Consensus 69 ~~~~~i~d~~----------~~--~~~~~~~---~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~~ 133 (169)
.+..+|+|+| +. ....... +.. ....||.+|||++|++++.+|+..| ++.+.. +...+...
T Consensus 81 ~g~~vi~dr~~~s~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~d~vi~l~~~~e~~~~Rl~~R--~~~~~~-~~~~~~~~ 156 (197)
T 2z0h_A 81 EGYAVLLDRYTDSSVAYQGFGRNLGKEIVEELNDFAT-DGLIPDLTFYIDVDVETALKRKGEL--NRFEKR-EFLERVRE 156 (197)
T ss_dssp --CEEEEESCHHHHHHHTTTTTCSCHHHHHHHHHHHH-TTCCCSEEEEEECCHHHHHHHC-----CCCCCH-HHHHHHHH
T ss_pred CCCEEEECCChhHHHHHHHhccCCCHHHHHHHHHHhc-CCCCCCEEEEEeCCHHHHHHHHhcc--CcccHH-HHHHHHHH
Confidence 2567788865 22 1222222 222 4457999999999999999999988 554443 44443344
Q ss_pred HHhhchhhHHHHhhhcCcEEEEeCCCChHHHHHhh
Q 040894 134 VYSESTLPVINYYSSKGKVRKIDAGRPIEEVFDEI 168 (169)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~id~~~~~~~v~~~i 168 (169)
.|..... .+ ...+++||++.+++++.++|
T Consensus 157 ~~~~~~~----~~--~~~~~~Id~~~~~e~~~~~i 185 (197)
T 2z0h_A 157 GYLVLAR----EH--PERIVVLDGKRSIEEIHRDV 185 (197)
T ss_dssp HHHHHHH----HC--TTTEEEEETTSCHHHHHHHH
T ss_pred HHHHHHH----hC--CCCEEEEeCCCCHHHHHHHH
Confidence 4443321 12 34678999999999999876
No 29
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=99.79 E-value=5.2e-18 Score=112.96 Aligned_cols=145 Identities=16% Similarity=0.190 Sum_probs=93.0
Q ss_pred CCCCChhHHHHHHHHHhCCceechhHHHHHHHhcCCcchHHHHHHHHcCCCCCHHHH---HHHHHHHHHcCCCceEEEeC
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHLSAGDLLEAEAESGSNDGKMIREYKKEGKLVPSEII---VKLLQKAMQESQNKNFVIDG 77 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~i~d~ 77 (169)
+|||||||+++.|++.+|+.+++.|.+..... ......+........ ...+...+. .+..+|+|+
T Consensus 26 ~~GsGKSTla~~L~~~lg~~~i~~d~~~~~~~----------~~~~~~g~~~~~~~~~~~~~~l~~~~~--~~~~vivd~ 93 (202)
T 3t61_A 26 VSGSGKSSVGEAIAEACGYPFIEGDALHPPEN----------IRKMSEGIPLTDDDRWPWLAAIGERLA--SREPVVVSC 93 (202)
T ss_dssp STTSCHHHHHHHHHHHHTCCEEEGGGGCCHHH----------HHHHHHTCCCCHHHHHHHHHHHHHHHT--SSSCCEEEC
T ss_pred CCCCCHHHHHHHHHHHhCCEEEeCCcCcchhh----------HHHHhcCCCCCchhhHHHHHHHHHHHh--cCCCEEEEC
Confidence 69999999999999999999999988753210 000111112222111 233333342 267889998
Q ss_pred CCCChHHHHHHHhhcCCCCCEEEEEEcCHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHhhchhhHHHHhhhcCcEEEEeC
Q 040894 78 FPRNEENLSAAENILKIEPNAVLVFDCSEEEMTRRILSRNQGRVDDKIDTIKKRLNVYSESTLPVINYYSSKGKVRKIDA 157 (169)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~ 157 (169)
..........+.. ....++.+|||++|++++.+|+.+| +......+.+...+..+... + .....++||+
T Consensus 94 ~~~~~~~~~~l~~-~~~~~~~vi~l~~~~e~~~~Rl~~R--~~~~~~~~~~~~~~~~~~~~-------~-~~~~~~~Id~ 162 (202)
T 3t61_A 94 SALKRSYRDKLRE-SAPGGLAFVFLHGSESVLAERMHHR--TGHFMPSSLLQTQLETLEDP-------R-GEVRTVAVDV 162 (202)
T ss_dssp CCCSHHHHHHHHH-TSTTCCEEEEEECCHHHHHHHHHHH--HSSCCCHHHHHHHHHHCCCC-------T-TSTTEEEEES
T ss_pred CCCCHHHHHHHHH-hcCCCeEEEEEeCCHHHHHHHHHHh--hccCCCHHHHHHHHHhcCCC-------C-CCCCeEEEeC
Confidence 7666666666666 5556689999999999999999988 22212244444333333321 1 2235678899
Q ss_pred CCChHHHHHhh
Q 040894 158 GRPIEEVFDEI 168 (169)
Q Consensus 158 ~~~~~~v~~~i 168 (169)
+.++++++++|
T Consensus 163 ~~~~~e~~~~I 173 (202)
T 3t61_A 163 AQPLAEIVREA 173 (202)
T ss_dssp SSCHHHHHHHH
T ss_pred CCCHHHHHHHH
Confidence 99999999876
No 30
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=99.79 E-value=4e-19 Score=119.77 Aligned_cols=154 Identities=16% Similarity=0.206 Sum_probs=92.2
Q ss_pred CCCCChhHHHHHHHHHhC-------CceechhHHHHHHHhcCCcchHHHHHHHHcCCCCCHHHH-------HHH----HH
Q 040894 1 GPGSGKSTQCSKIAKHLG-------FRHLSAGDLLEAEAESGSNDGKMIREYKKEGKLVPSEII-------VKL----LQ 62 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~-------~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~----l~ 62 (169)
|+||||||+++.|+++++ +.++. .+. +.+++++..+++++..+...+.... .+. ++
T Consensus 33 ~~GsGKsT~~~~l~~~l~~~~~~~g~~v~~----~re--p~~t~~g~~ir~~l~~~~~~~~~~~llf~a~R~~~~~~~i~ 106 (227)
T 3v9p_A 33 IDGAGKTTHLQWFCDRLQERLGPAGRHVVV----TRE--PGGTRLGETLREILLNQPMDLETEALLMFAGRREHLALVIE 106 (227)
T ss_dssp CC---CHHHHHHHHHHHHHHHGGGTCCEEE----EES--SSSSHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTHH
T ss_pred CCCCCHHHHHHHHHHHHHhhccccceeeee----ecC--CCCChHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 699999999999999984 33322 121 2356678888888876644443322 122 22
Q ss_pred HHHHcCCCceEEEeCCCC------------ChHHHHHHHhh--cCCCCCEEEEEEcCHHHHHHHHhcCC-CCCCCC-cHH
Q 040894 63 KAMQESQNKNFVIDGFPR------------NEENLSAAENI--LKIEPNAVLVFDCSEEEMTRRILSRN-QGRVDD-KID 126 (169)
Q Consensus 63 ~~~~~~~~~~~i~d~~~~------------~~~~~~~~~~~--~~~~~~~~i~l~~~~~~~~~R~~~R~-~~~~~~-~~~ 126 (169)
..+.. +..+|+|+|.. .......+... ..+.||++|||++|++++.+|+.+|. ..+.+. ..+
T Consensus 107 p~l~~--g~~VI~DRy~~S~~ayq~~~~gl~~~~~~~l~~~~~~~~~PDl~I~Ldv~~e~~~~Ri~~R~~~dr~E~~~~e 184 (227)
T 3v9p_A 107 PALAR--GDWVVSDRFTDATFAYQGGGRGLPRDKLEALERWVQGGFQPDLTVLFDVPPQIASARRGAVRMPDKFESESDA 184 (227)
T ss_dssp HHHHT--TCEEEEECCHHHHHHHHTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCSSCGGGTTTCCCCC---CCHHHH
T ss_pred HHHHc--CCEEEEeccHhHHHHHhhhccCCCHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhccCccchhhhhHH
Confidence 33333 77889998721 12222222211 45789999999999999999999882 122222 133
Q ss_pred HHHHHHHHHhhchhhHHHHhhhcCcEEEEeCCCChHHHHHhh
Q 040894 127 TIKKRLNVYSESTLPVINYYSSKGKVRKIDAGRPIEEVFDEI 168 (169)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~v~~~i 168 (169)
.+.+....|.... +.+ +..+++||+++++++|.++|
T Consensus 185 f~~rv~~~Y~~la----~~~--~~~~~vIDa~~s~eeV~~~I 220 (227)
T 3v9p_A 185 FFARTRAEYLRRA----QEA--PHRFVIVDSSEPIAQIRKQL 220 (227)
T ss_dssp HHHHHHHHHHHHH----HHC--TTTEEEEETTSCHHHHHHHH
T ss_pred HHHHHHHHHHHHH----HHh--cCCEEEEeCCCCHHHHHHHH
Confidence 3333334444322 112 34799999999999999886
No 31
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=99.79 E-value=6.8e-19 Score=117.72 Aligned_cols=155 Identities=20% Similarity=0.291 Sum_probs=95.5
Q ss_pred CCCCChhHHHHHHHHHhCCcee-chhHHHHHHHhcCCcchHHHHHHHHcC------CCCCHHHH-------HHH----HH
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHL-SAGDLLEAEAESGSNDGKMIREYKKEG------KLVPSEII-------VKL----LQ 62 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i-~~d~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~-------~~~----l~ 62 (169)
++||||||+++.|++++....+ .. .+.+. +.+++++..+++++... ...+.... .+. +.
T Consensus 11 ~~gsGKsT~~~~l~~~l~~~~~~~v-~~~re--p~~t~~g~~ir~~l~~~~~~~~~~~~~~~e~lL~~A~R~~~~~~~i~ 87 (213)
T 4tmk_A 11 LEGAGKTTARNVVVETLEQLGIRDM-VFTRE--PGGTQLAEKLRSLLLDIKSVGDEVITDKAEVLMFYAARVQLVETVIK 87 (213)
T ss_dssp CTTSCHHHHHHHHHHHHHHTTCCCE-EEEES--SCSSHHHHHHHHHHHSTTTTTTCCCCHHHHHHHHHHHHHHHHHHTHH
T ss_pred CCCCCHHHHHHHHHHHHHHcCCCcc-eeeeC--CCCCHHHHHHHHHHhcccccccccCChHHHHHHHHHHHHHHHHHHHH
Confidence 6899999999999998843222 11 01111 24677888888887632 22222211 222 33
Q ss_pred HHHHcCCCceEEEeCCC------------CChHHHHH---HHhhcCCCCCEEEEEEcCHHHHHHHHhcCCC-CCCC-CcH
Q 040894 63 KAMQESQNKNFVIDGFP------------RNEENLSA---AENILKIEPNAVLVFDCSEEEMTRRILSRNQ-GRVD-DKI 125 (169)
Q Consensus 63 ~~~~~~~~~~~i~d~~~------------~~~~~~~~---~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~-~~~~-~~~ 125 (169)
..+.. +..+|+|+|. ........ +.. ....||++|||++|++++.+|+.+|.. .+.+ +..
T Consensus 88 paL~~--g~~VI~DRy~~S~~AYq~~~~g~~~~~~~~l~~~~~-~~~~PDl~i~Ldv~~e~~~~Ri~~R~~~dr~E~~~~ 164 (213)
T 4tmk_A 88 PALAN--GTWVIGDRHDLSTQAYQGGGRGIDQHMLATLRDAVL-GDFRPDLTLYLDVTPEVGLKRARARGELDRIEQESF 164 (213)
T ss_dssp HHHHT--TCEEEEECCHHHHHHHTTTTTCCCHHHHHHHHHHHH-TTCCCSEEEEEECCHHHHHHHHHHHSSCCTTTTSCH
T ss_pred HHHHC--CCEEEEcCcHhHHHHHcccccCCCHHHHHHHHHHhc-cCCCCCEEEEEeCCHHHHHHHHHhcCCccchhhhHH
Confidence 33443 7889999871 11222222 222 457899999999999999999998821 2222 234
Q ss_pred HHHHHHHHHHhhchhhHHHHhhhcCcEEEEeCCCChHHHHHhh
Q 040894 126 DTIKKRLNVYSESTLPVINYYSSKGKVRKIDAGRPIEEVFDEI 168 (169)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~v~~~i 168 (169)
+.+.+....|..... ....+++||+++|+++|.++|
T Consensus 165 ~f~~rv~~~y~~la~-------~~~~~~vIDa~~s~eeV~~~I 200 (213)
T 4tmk_A 165 DFFNRTRARYLELAA-------QDKSIHTIDATQPLEAVMDAI 200 (213)
T ss_dssp HHHHHHHHHHHHHHH-------TCTTEEEEETTSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-------HCCcEEEECCCCCHHHHHHHH
Confidence 444444444543321 125789999999999999886
No 32
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=99.78 E-value=9.2e-19 Score=118.64 Aligned_cols=157 Identities=22% Similarity=0.262 Sum_probs=90.5
Q ss_pred CCCCChhHHHHHHHHHhCCceechhHHHHHHHhcCCcchHHHHHHHHcC----CCCCHHHH-------HHH----HHHHH
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHLSAGDLLEAEAESGSNDGKMIREYKKEG----KLVPSEII-------VKL----LQKAM 65 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~-------~~~----l~~~~ 65 (169)
++||||||+++.|+++++...++...+.+. +.+++++..+++++..+ ...+.... .+. +...+
T Consensus 35 ~~GsGKsT~~~~l~~~l~~~~~~~~~~~re--p~~t~~g~~ir~~l~~~~~~~~~~~~~e~lLf~A~R~~~~~~~I~paL 112 (236)
T 3lv8_A 35 LEGAGKSTAIQVVVETLQQNGIDHITRTRE--PGGTLLAEKLRALVKEEHPGEELQDITELLLVYAARVQLVENVIKPAL 112 (236)
T ss_dssp STTSCHHHHHHHHHHHHHHTTCCCEEEEES--SCSSHHHHHHHHHHHSCCTTSCCCHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCeeeeecC--CCCCHHHHHHHHHHhhCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 689999999999999885332221112222 24677788888887521 12222111 222 23333
Q ss_pred HcCCCceEEEeCCC----------CC--hHHHHHHHhh--cCCCCCEEEEEEcCHHHHHHHHhcCC-CCCCCC-cHHHHH
Q 040894 66 QESQNKNFVIDGFP----------RN--EENLSAAENI--LKIEPNAVLVFDCSEEEMTRRILSRN-QGRVDD-KIDTIK 129 (169)
Q Consensus 66 ~~~~~~~~i~d~~~----------~~--~~~~~~~~~~--~~~~~~~~i~l~~~~~~~~~R~~~R~-~~~~~~-~~~~~~ 129 (169)
.. +..+|+|+|. .. ......+... ....||++|||++|++++.+|+.+|. ..+.+. ..+.+.
T Consensus 113 ~~--g~~VI~DRy~~S~~AYq~~~rgl~~~~i~~l~~~~~~~~~PDlvi~Ldv~~e~~~~Ri~~R~~~dr~E~~~~~~~~ 190 (236)
T 3lv8_A 113 AR--GEWVVGDRHDMSSQAYQGGGRQIAPSTMQSLKQTALGDFKPDLTLYLDIDPKLGLERARGRGELDRIEKMDISFFE 190 (236)
T ss_dssp HT--TCEEEEESCHHHHHHHTTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHC-----CCCTTTTSCHHHHH
T ss_pred Hc--CCEEEEeeecchHHhhhhhccCCCHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhcCCcchhhhhHHHHHH
Confidence 33 7889999861 11 2222222211 45789999999999999999999882 123222 234444
Q ss_pred HHHHHHhhchhhHHHHhhhcCcEEEEeCCCChHHHHHhh
Q 040894 130 KRLNVYSESTLPVINYYSSKGKVRKIDAGRPIEEVFDEI 168 (169)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~v~~~i 168 (169)
+....|..... ....+++||+++++++|.++|
T Consensus 191 rv~~~y~~la~-------~~~~~~vIDa~~sieeV~~~I 222 (236)
T 3lv8_A 191 RARERYLELAN-------SDDSVVMIDAAQSIEQVTADI 222 (236)
T ss_dssp HHHHHHHHHHH-------HCTTEEEEETTSCHHHHHHHH
T ss_pred HHHHHHHHHHH-------HCCCEEEEeCCCCHHHHHHHH
Confidence 44444443321 112389999999999999886
No 33
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=99.78 E-value=1.4e-17 Score=108.08 Aligned_cols=136 Identities=19% Similarity=0.263 Sum_probs=86.1
Q ss_pred CCCCChhHHHHHHHHHhCCceechhHHHHHHHhcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCCceEEEeCCC-
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHLSAGDLLEAEAESGSNDGKMIREYKKEGKLVPSEIIVKLLQKAMQESQNKNFVIDGFP- 79 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~d~~~- 79 (169)
||||||||+++.|++.+++.+++.|.+..... .. .. ...... .+.. +..+|+|++.
T Consensus 9 ~~GsGKsT~~~~L~~~l~~~~i~~d~~~~~~~----~~----~~------------~~~~~~-~l~~--~~~vi~dr~~~ 65 (173)
T 3kb2_A 9 PDCCFKSTVAAKLSKELKYPIIKGSSFELAKS----GN----EK------------LFEHFN-KLAD--EDNVIIDRFVY 65 (173)
T ss_dssp SSSSSHHHHHHHHHHHHCCCEEECCCHHHHTT----CH----HH------------HHHHHH-HHTT--CCSEEEESCHH
T ss_pred CCCCCHHHHHHHHHHHhCCeeecCcccccchh----HH----HH------------HHHHHH-HHHh--CCCeEEeeeec
Confidence 79999999999999999999999987765431 00 00 011111 1222 4556667431
Q ss_pred --------------CChHHHHHHHhhcCCCCCEEEEEEcCHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHhhchhhHHHH
Q 040894 80 --------------RNEENLSAAENILKIEPNAVLVFDCSEEEMTRRILSRNQGRVDDKIDTIKKRLNVYSESTLPVINY 145 (169)
Q Consensus 80 --------------~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (169)
........+.. ....|+.+|||++|++++.+|+..| +++....+.+.+....|... ...
T Consensus 66 ~~~v~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~i~l~~~~e~~~~R~~~r--~r~~~~~~~~~~~~~~~~~~----~~~ 138 (173)
T 3kb2_A 66 SNLVYAKKFKDYSILTERQLRFIED-KIKAKAKVVYLHADPSVIKKRLRVR--GDEYIEGKDIDSILELYREV----MSN 138 (173)
T ss_dssp HHHHHTTTBTTCCCCCHHHHHHHHH-HHTTTEEEEEEECCHHHHHHHHHHH--SCSCCCHHHHHHHHHHHHHH----HHT
T ss_pred chHHHHHHHHHhhHhhHHHHHHHhc-cCCCCCEEEEEeCCHHHHHHHHHhc--CCcchhhhHHHHHHHHHHHH----Hhh
Confidence 11222222333 3356899999999999999999987 55555544444334444432 222
Q ss_pred hhhcCcEEEEeCC-CChHHHHHhh
Q 040894 146 YSSKGKVRKIDAG-RPIEEVFDEI 168 (169)
Q Consensus 146 ~~~~~~~~~id~~-~~~~~v~~~i 168 (169)
+. ..+++||++ .++++++++|
T Consensus 139 ~~--~~~~~id~~~~~~~ev~~~I 160 (173)
T 3kb2_A 139 AG--LHTYSWDTGQWSSDEIAKDI 160 (173)
T ss_dssp CS--SCEEEEETTTSCHHHHHHHH
T ss_pred cC--CCEEEEECCCCCHHHHHHHH
Confidence 22 356788888 6999999887
No 34
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=99.77 E-value=5.8e-18 Score=113.28 Aligned_cols=156 Identities=21% Similarity=0.240 Sum_probs=97.9
Q ss_pred CCCCChhHHHHHHHHHhCCceechhHHHHHHHhcCCcchHHHHHHHHcCC--CCCHHHH----------HHHHHHHHHcC
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHLSAGDLLEAEAESGSNDGKMIREYKKEGK--LVPSEII----------VKLLQKAMQES 68 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~----------~~~l~~~~~~~ 68 (169)
++||||||+++.|+++++..+. +++.+ ..+++++..+++++.... ..+.... .+.+...+..
T Consensus 13 ~~g~GKst~~~~l~~~l~~~~~----~~~ep-~~~t~~g~~ir~~l~~~~~~~~~~~~~llf~a~R~~~~~~I~paL~~- 86 (216)
T 3tmk_A 13 LDRTGKTTQCNILYKKLQPNCK----LLKFP-ERSTRIGGLINEYLTDDSFQLSDQAIHLLFSANRWEIVDKIKKDLLE- 86 (216)
T ss_dssp CSSSSHHHHHHHHHHHHCSSEE----EEESS-CTTSHHHHHHHHHHHCTTSCCCHHHHHHHHHHHHHTTHHHHHHHHHT-
T ss_pred CCCCCHHHHHHHHHHHhcccce----EEEec-CCCChHHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHHHHHc-
Confidence 6899999999999999986321 11211 236777888888886543 2222111 1223334443
Q ss_pred CCceEEEeCCCC--------------ChHHHHHHHhhcCCCCCEEEEE-EcCHHHHHHHHhcCCCCCCCCcHHHHHHHHH
Q 040894 69 QNKNFVIDGFPR--------------NEENLSAAENILKIEPNAVLVF-DCSEEEMTRRILSRNQGRVDDKIDTIKKRLN 133 (169)
Q Consensus 69 ~~~~~i~d~~~~--------------~~~~~~~~~~~~~~~~~~~i~l-~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~~ 133 (169)
+..+|+|+|.. .......+.. ..+.||++||| ++|++++.+|+..| +...+..+.+.+...
T Consensus 87 -g~~VI~DRy~~S~~ayq~~~~l~~~~~~~l~~~~~-~~~~PDlti~L~dv~pe~~~~R~~~~--~dr~E~~~f~~rvr~ 162 (216)
T 3tmk_A 87 -GKNIVMDRYVYSGVAYSAAKGTNGMDLDWCLQPDV-GLLKPDLTLFLSTQDVDNNAEKSGFG--DERYETVKFQEKVKQ 162 (216)
T ss_dssp -TCEEEEESCHHHHHHHHHTTCCTTCCHHHHHGGGT-TSBCCSEEEEEECSCCSCGGGCCSSS--CCTTCCHHHHHHHHH
T ss_pred -CCEEEEeccHhHHHHHHHhcCCCHHHHHHHHHHhh-CCCCCCEEEEEeCCCHHHHHHHhccC--cccccHHHHHHHHHH
Confidence 78889999721 1222222222 45789999999 99999999998654 333345555554445
Q ss_pred HHhhchhhHHHHhhhcCcEEEEe-CCCChHHHHHhh
Q 040894 134 VYSESTLPVINYYSSKGKVRKID-AGRPIEEVFDEI 168 (169)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~id-~~~~~~~v~~~i 168 (169)
.|.+....... .....+++|| +++|+++|.++|
T Consensus 163 ~Y~~la~~~~~--~~~~~~~vID~a~~s~eeV~~~I 196 (216)
T 3tmk_A 163 TFMKLLDKEIR--KGDESITIVDVTNKGIQEVEALI 196 (216)
T ss_dssp HHHHHHHHHHH--TTCCSEEEEECTTCCHHHHHHHH
T ss_pred HHHHHHHhccc--cCCCCEEEEeCCCCCHHHHHHHH
Confidence 55554332111 1245899999 999999999886
No 35
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=99.77 E-value=6.8e-18 Score=114.37 Aligned_cols=153 Identities=21% Similarity=0.331 Sum_probs=91.0
Q ss_pred CCCCChhHHHHHHHHHhC--CceechhHHHHHHHhcCCcchHHHHHHHHcCCCCCHHHH-HHH-----------HHHHHH
Q 040894 1 GPGSGKSTQCSKIAKHLG--FRHLSAGDLLEAEAESGSNDGKMIREYKKEGKLVPSEII-VKL-----------LQKAMQ 66 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~--~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-----------l~~~~~ 66 (169)
||||||||+++.|++.++ ..++.. ..+.++..+..+++++..+........ .-. +...+.
T Consensus 34 ~~GsGKsT~~~~l~~~l~~~~~~~~~------~~p~~~~~g~~i~~~~~~~~~~~~~~~~ll~~a~r~~~~~~~i~~~l~ 107 (229)
T 4eaq_A 34 PEGSGKTTVINEVYHRLVKDYDVIMT------REPGGVPTGEEIRKIVLEGNDMDIRTEAMLFAASRREHLVLKVIPALK 107 (229)
T ss_dssp CTTSCHHHHHHHHHHHHTTTSCEEEE------CTTTTCHHHHHHHHHTTC---CCHHHHHHHHHHHHHHHCCCCCHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhcCCCceee------cCCCCCchHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 799999999999999996 344432 113355667777777765543222211 111 112222
Q ss_pred cCCCceEEEe----------CCCCChHH--HHH---HHhhcCCCCCEEEEEEcCHHHHHHHHhcCC--CCCCCCcHHHHH
Q 040894 67 ESQNKNFVID----------GFPRNEEN--LSA---AENILKIEPNAVLVFDCSEEEMTRRILSRN--QGRVDDKIDTIK 129 (169)
Q Consensus 67 ~~~~~~~i~d----------~~~~~~~~--~~~---~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~--~~~~~~~~~~~~ 129 (169)
.+..+|+| |++..... ... +.. ....||++|||++|++++.+|+.+|. .++.++....+.
T Consensus 108 --~g~~Vi~DRy~~s~~ayqg~~r~~~~~~~~~l~~~~~-~~~~pd~vi~L~~~~e~~~~R~~~R~~~~dr~e~~~~~~~ 184 (229)
T 4eaq_A 108 --EGKVVLCDRYIDSSLAYQGYARGIGVEEVRALNEFAI-NGLYPDLTIYLNVSAEVGRERIIKNSRDQNRLDQEDLKFH 184 (229)
T ss_dssp --TTCEEEEECCHHHHCCCCCCCSCSCHHHHHHHHHHHH-TTCCCSEEEEEECCHHHHHHHHHHC-----CCCHHHHHHH
T ss_pred --CCCEEEECCchhHHHHHHHhhcCCCHHHHHHHHHHHh-cCCCCCEEEEEeCCHHHHHHHHHhcCCCccchhhhhHHHH
Confidence 26788999 66554322 222 222 45689999999999999999999882 122222222233
Q ss_pred HHH-HHHhhchhhHHHHhhhcCcEEEEeCCCChHHHHHhh
Q 040894 130 KRL-NVYSESTLPVINYYSSKGKVRKIDAGRPIEEVFDEI 168 (169)
Q Consensus 130 ~~~-~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~v~~~i 168 (169)
+++ ..|..... .+ ...+++||++++++++.++|
T Consensus 185 ~rv~~~y~~l~~----~~--~~~~~vIDa~~s~eev~~~I 218 (229)
T 4eaq_A 185 EKVIEGYQEIIH----NE--SQRFKSVNADQPLENVVEDT 218 (229)
T ss_dssp HHHHHHHHHHTT----TC--TTTEEEEETTSCHHHHHHHH
T ss_pred HHHHHHHHHHHH----hC--CCCEEEEeCCCCHHHHHHHH
Confidence 222 23333211 11 24689999999999999887
No 36
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=99.76 E-value=1.6e-17 Score=109.10 Aligned_cols=150 Identities=16% Similarity=0.152 Sum_probs=85.8
Q ss_pred CCCCChhHHHHHHHHHhCCceechhHHHHHHHhcCCcchHHHHHHHH-cCCCCCHHHHHHHHHHHHHcCCCceEEEeC--
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHLSAGDLLEAEAESGSNDGKMIREYKK-EGKLVPSEIIVKLLQKAMQESQNKNFVIDG-- 77 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~i~d~-- 77 (169)
||||||||+++.|++.+|+.+++.|+++..... .. +.+.+. .+...+.......+...... ...+|..|
T Consensus 13 ~~GsGKst~a~~La~~l~~~~i~~d~~~~~~~g--~~----~~~~~~~~g~~~~~~~~~~~~~~~~~~--~~~vi~~gg~ 84 (185)
T 3trf_A 13 LMGAGKTSVGSQLAKLTKRILYDSDKEIEKRTG--AD----IAWIFEMEGEAGFRRREREMIEALCKL--DNIILATGGG 84 (185)
T ss_dssp STTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHT--SC----HHHHHHHHHHHHHHHHHHHHHHHHHHS--SSCEEECCTT
T ss_pred CCCCCHHHHHHHHHHHhCCCEEEChHHHHHHcC--CC----hhhHHHHhCHHHHHHHHHHHHHHHHhc--CCcEEecCCc
Confidence 699999999999999999999999999877532 11 222221 11122333334555554443 33344433
Q ss_pred CCCChHHHHHHHhhcCCCCCEEEEEEcCHHHHHHHH--hcCCCCCCCCcHHHHHHHHHHHhhchhhHHHHhhhcCcEEEE
Q 040894 78 FPRNEENLSAAENILKIEPNAVLVFDCSEEEMTRRI--LSRNQGRVDDKIDTIKKRLNVYSESTLPVINYYSSKGKVRKI 155 (169)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~--~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 155 (169)
..........+.. ...+|||++|++++.+|+ ..+ ..|+..........+........+. |.....+ +|
T Consensus 85 ~~~~~~~~~~l~~-----~~~vi~L~~~~e~l~~Rl~~~~~-~~rp~~~~~~~~~~l~~~~~~r~~~---y~~~ad~-~I 154 (185)
T 3trf_A 85 VVLDEKNRQQISE-----TGVVIYLTASIDTQLKRIGQKGE-MRRPLFIKNNSKEKLQQLNEIRKPL---YQAMADL-VY 154 (185)
T ss_dssp GGGSHHHHHHHHH-----HEEEEEEECCHHHHHHHHHCCTT-CSSCCCCCHHHHHHHHHHHHHHHHH---HHHHCSE-EE
T ss_pred eecCHHHHHHHHh-----CCcEEEEECCHHHHHHHHhhcCC-CCCCCCCCCCHHHHHHHHHHHHHHH---HhhcCCE-EE
Confidence 2333333444443 348999999999999999 433 2344333222222233322222233 3322344 55
Q ss_pred eCC-CChHHHHHhh
Q 040894 156 DAG-RPIEEVFDEI 168 (169)
Q Consensus 156 d~~-~~~~~v~~~i 168 (169)
|++ .++++++++|
T Consensus 155 dt~~~~~~e~~~~I 168 (185)
T 3trf_A 155 PTDDLNPRQLATQI 168 (185)
T ss_dssp ECTTCCHHHHHHHH
T ss_pred ECCCCCHHHHHHHH
Confidence 554 5999999876
No 37
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=99.75 E-value=2.7e-17 Score=106.82 Aligned_cols=149 Identities=17% Similarity=0.199 Sum_probs=84.0
Q ss_pred CCCCChhHHHHHHHHHhCCceechhHHHHHHHhcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCCceEEE-eCC-
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHLSAGDLLEAEAESGSNDGKMIREYKKEGKLVPSEIIVKLLQKAMQESQNKNFVI-DGF- 78 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~-d~~- 78 (169)
+|||||||+++.|++.+++++++.|++++.. .+......+.. .+...+.......+.. +. ...+|+ +|.
T Consensus 10 ~~GsGKsT~a~~La~~lg~~~id~d~~~~~~--~g~~~~~~~~~---~~~~~~~~~~~~~~~~-l~---~~~~vi~~g~~ 80 (173)
T 1e6c_A 10 ARGCGMTTVGRELARALGYEFVDTDIFMQHT--SGMTVADVVAA---EGWPGFRRRESEALQA-VA---TPNRVVATGGG 80 (173)
T ss_dssp CTTSSHHHHHHHHHHHHTCEEEEHHHHHHHH--HCSCHHHHHHH---HHHHHHHHHHHHHHHH-HC---CSSEEEECCTT
T ss_pred CCCCCHHHHHHHHHHHhCCcEEcccHHHHHH--hCCCHHHHHHH---cCHHHHHHHHHHHHHH-hh---cCCeEEECCCc
Confidence 6999999999999999999999999998765 22222211110 1111111111222222 22 234555 442
Q ss_pred -CCChHHHHHHHhhcCCCCCEEEEEEcCHHHHHHHHh--cCCCCCCCCcHHHHHHHHHHHhhchhhHHHHhhhcCcEEEE
Q 040894 79 -PRNEENLSAAENILKIEPNAVLVFDCSEEEMTRRIL--SRNQGRVDDKIDTIKKRLNVYSESTLPVINYYSSKGKVRKI 155 (169)
Q Consensus 79 -~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~--~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 155 (169)
+........+.. ++.+|||++|++++.+|+. .|...++....+...+++..+.....+. +.. .. ++|
T Consensus 81 ~~~~~~~~~~l~~-----~~~~i~l~~~~e~~~~R~~~~~r~~~r~~~~~~~~~~~~~~~~~~~~~~---~~~-~~-~~I 150 (173)
T 1e6c_A 81 MVLLEQNRQFMRA-----HGTVVYLFAPAEELALRLQASLQAHQRPTLTGRPIAEEMEAVLREREAL---YQD-VA-HYV 150 (173)
T ss_dssp GGGSHHHHHHHHH-----HSEEEEEECCHHHHHHHHHHHHCSCCCCCTTHHHHHHHHHHHHHHHHHH---HHH-HC-SEE
T ss_pred EEeCHHHHHHHHc-----CCeEEEEECCHHHHHHHHhhccCCCCCCcCCCCCHHHHHHHHHHHHHHH---HHh-Cc-EEE
Confidence 222223333333 6799999999999999998 7622344333233333343333222222 222 23 566
Q ss_pred eCC-CChHHHHHhh
Q 040894 156 DAG-RPIEEVFDEI 168 (169)
Q Consensus 156 d~~-~~~~~v~~~i 168 (169)
|++ .++++++++|
T Consensus 151 d~~~~~~~~~~~~i 164 (173)
T 1e6c_A 151 VDATQPPAAIVCEL 164 (173)
T ss_dssp EETTSCHHHHHHHH
T ss_pred ECCCCCHHHHHHHH
Confidence 776 8999999876
No 38
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=99.75 E-value=6.9e-18 Score=109.23 Aligned_cols=143 Identities=16% Similarity=0.195 Sum_probs=81.1
Q ss_pred CCCCChhHHHHHHHHHhCCceechhHHHHHHHhcCCcchHHHHHHHH-cCCCCCHHHHHHHHHHHHHcCCCce-EEEeC-
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHLSAGDLLEAEAESGSNDGKMIREYKK-EGKLVPSEIIVKLLQKAMQESQNKN-FVIDG- 77 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~-~i~d~- 77 (169)
+|||||||+++.|++++|+++++.|.+++... +. .+.+++. .+...+.......+...... +.. +|..|
T Consensus 15 ~~GsGKSTva~~La~~lg~~~id~D~~~~~~~--g~----~~~~~~~~~g~~~~~~~~~~~l~~~~~~--~~~~Vi~~g~ 86 (168)
T 1zuh_A 15 FMGSGKSSLAQELGLALKLEVLDTDMIISERV--GL----SVREIFEELGEDNFRMFEKNLIDELKTL--KTPHVISTGG 86 (168)
T ss_dssp CTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHH--TS----CHHHHHHHTCHHHHHHHHHHHHHHHHTC--SSCCEEECCG
T ss_pred CCCCCHHHHHHHHHHHhCCCEEEChHHHHHHh--CC----CHHHHHHHhCHHHHHHHHHHHHHHHHhc--CCCEEEECCC
Confidence 69999999999999999999999999988763 22 1233332 23222223333444444432 333 33323
Q ss_pred -CCCChHHHHHHHhhcCCCCCEEEEEEcCHHHHHHHHhcCC-CCCCCCc-HHHHHHHHHHHhhchhhHHHHhhhcCcEEE
Q 040894 78 -FPRNEENLSAAENILKIEPNAVLVFDCSEEEMTRRILSRN-QGRVDDK-IDTIKKRLNVYSESTLPVINYYSSKGKVRK 154 (169)
Q Consensus 78 -~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (169)
++.. .. + ..++.+|||++|++++.+|+..|. .+++... .+.+...+. . ..+ .|..... ++
T Consensus 87 g~~~~-~~---l-----~~~~~vi~l~~~~e~~~~Rl~~r~~~~r~~~~~~~~~~~~~~---~-r~~---~~~~~a~-~~ 149 (168)
T 1zuh_A 87 GIVMH-EN---L-----KGLGTTFYLKMDFETLIKRLNQKEREKRPLLNNLTQAKELFE---K-RQA---LYEKNAS-FI 149 (168)
T ss_dssp GGGGC-GG---G-----TTSEEEEEEECCHHHHHHHHCC--------CCTTHHHHHHHH---H-HHH---HHHHTCS-EE
T ss_pred CEech-hH---H-----hcCCEEEEEECCHHHHHHHHhccCCCCCCCccCHHHHHHHHH---H-HHH---HHHHHCC-EE
Confidence 2222 11 2 237899999999999999998761 1233222 222222221 1 112 2322233 56
Q ss_pred EeCCCChHHHHHhh
Q 040894 155 IDAGRPIEEVFDEI 168 (169)
Q Consensus 155 id~~~~~~~v~~~i 168 (169)
||++.++++++++|
T Consensus 150 Id~~~~~e~~~~~I 163 (168)
T 1zuh_A 150 IDARGGLNNSLKQV 163 (168)
T ss_dssp EEGGGCHHHHHHHH
T ss_pred EECCCCHHHHHHHH
Confidence 67766999999887
No 39
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=99.74 E-value=7.6e-18 Score=113.09 Aligned_cols=153 Identities=15% Similarity=0.165 Sum_probs=81.0
Q ss_pred CCCCChhHHHHHHHHHhCC-ceechhHHHHHHHhcCCcchHHHHHHHHcC-CCCCHHHH-------HHHHHH----HHHc
Q 040894 1 GPGSGKSTQCSKIAKHLGF-RHLSAGDLLEAEAESGSNDGKMIREYKKEG-KLVPSEII-------VKLLQK----AMQE 67 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~-~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-------~~~l~~----~~~~ 67 (169)
++||||||+++.|+++++. ..+++-.+.+. +.+++++..+++++... ...+.... .+.+.. .+..
T Consensus 29 ~~g~GKst~~~~l~~~l~~~~g~~v~~~tre--P~~t~~g~~ir~~l~~~~~~~~~~e~llf~a~R~~~~~~~I~paL~~ 106 (223)
T 3ld9_A 29 IDGSGKTTQSHLLAEYLSEIYGVNNVVLTRE--PGGTLLNESVRNLLFKAQGLDSLSELLFFIAMRREHFVKIIKPSLMQ 106 (223)
T ss_dssp STTSSHHHHHHHHHHHHHHHHCGGGEEEEES--SCSSHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHTHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHhhccCceeeEeeeC--CCCChHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5899999999999998765 33332000111 23566777788877542 22222211 222333 3333
Q ss_pred CCCceEEEeCCCC------------ChHHHHHHHhh--cCCCCCEEEEEEcCHHHHHHHHhcCCCCCCCC-cHHHHHHHH
Q 040894 68 SQNKNFVIDGFPR------------NEENLSAAENI--LKIEPNAVLVFDCSEEEMTRRILSRNQGRVDD-KIDTIKKRL 132 (169)
Q Consensus 68 ~~~~~~i~d~~~~------------~~~~~~~~~~~--~~~~~~~~i~l~~~~~~~~~R~~~R~~~~~~~-~~~~~~~~~ 132 (169)
+..+|+|+|.. .......+... . +.||++|||++|++++.+|+ .| ++.+. ..+.+.+..
T Consensus 107 --g~~VI~DRy~~S~~Ayq~~~~g~~~~~~~~l~~~~~~-~~PDl~I~Ldv~~e~~~~Ri-~r--dr~E~~~~e~~~rv~ 180 (223)
T 3ld9_A 107 --KKIVICDRFIDSTIAYQGYGQGIDCSLIDQLNDLVID-VYPDITFIIDVDINESLSRS-CK--NGYEFADMEFYYRVR 180 (223)
T ss_dssp --TCEEEEESCHHHHHHHHTTTTCCCHHHHHHHHHHHCS-SCCSEEEEEECC-------------------CHHHHHHHH
T ss_pred --CCeEEEccchhhHHHhccccCCccHHHHHHHHHHhhc-CCCCeEEEEeCCHHHHHHHh-cc--CccccchHHHHHHHH
Confidence 77889999721 12222222221 3 68999999999999999999 55 44332 244444444
Q ss_pred HHHhhchhhHHHHhhhcCcEEEEeCCCChHHHHHhh
Q 040894 133 NVYSESTLPVINYYSSKGKVRKIDAGRPIEEVFDEI 168 (169)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~v~~~i 168 (169)
..|..... .+ ...+++||+++++++| ++|
T Consensus 181 ~~y~~la~----~~--~~~~~vIDa~~sieeV-~~I 209 (223)
T 3ld9_A 181 DGFYDIAK----KN--PHRCHVITDKSETYDI-DDI 209 (223)
T ss_dssp HHHHHHHH----HC--TTTEEEEESSCSSSCC-CHH
T ss_pred HHHHHHHH----HC--CCCEEEEcCCCCHHHH-HHH
Confidence 44544321 22 2478999999999999 776
No 40
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=99.74 E-value=3.7e-17 Score=107.27 Aligned_cols=151 Identities=21% Similarity=0.231 Sum_probs=83.4
Q ss_pred CCCCChhHHHHHHHHHhCCceechhHHHHHHHhcCCcchHHHHHHH-HcCCCCCHHHHHHHHHHHHHcCCCceEEEeCCC
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHLSAGDLLEAEAESGSNDGKMIREYK-KEGKLVPSEIIVKLLQKAMQESQNKNFVIDGFP 79 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~i~d~~~ 79 (169)
+|||||||+|+.|++.+|+++++.|++++... +.. +..++ ..+...+.......+...+.. ...+|..|..
T Consensus 10 ~~GsGKsT~a~~La~~lg~~~id~D~~~~~~~--g~~----~~~~~~~~g~~~~~~~~~~~~~~~~~~--~~~vi~~g~~ 81 (184)
T 2iyv_A 10 LPGSGKSTIGRRLAKALGVGLLDTDVAIEQRT--GRS----IADIFATDGEQEFRRIEEDVVRAALAD--HDGVLSLGGG 81 (184)
T ss_dssp STTSSHHHHHHHHHHHHTCCEEEHHHHHHHHH--SSC----HHHHHHHHCHHHHHHHHHHHHHHHHHH--CCSEEECCTT
T ss_pred CCCCCHHHHHHHHHHHcCCCEEeCchHHHHHc--CCC----HHHHHHHhChHHHHHHHHHHHHHHHhc--CCeEEecCCc
Confidence 69999999999999999999999999988763 211 12222 122222333333445544443 3333434421
Q ss_pred CChHHHHHHHhhcCCCCCEEEEEEcCHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHhhchhhHHHHhhhcCcEEEEeCC-
Q 040894 80 RNEENLSAAENILKIEPNAVLVFDCSEEEMTRRILSRNQGRVDDKIDTIKKRLNVYSESTLPVINYYSSKGKVRKIDAG- 158 (169)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~- 158 (169)
..... ..... .. .+.+|||++|++++.+|+..|. +++..........+..+.....+ .|...+. ++||++
T Consensus 82 ~v~~~-~~~~~-l~--~~~vV~L~~~~e~~~~Rl~~r~-~r~~~~~~~~~~~i~~~~~~r~~---~~~~~~~-~~Idt~~ 152 (184)
T 2iyv_A 82 AVTSP-GVRAA-LA--GHTVVYLEISAAEGVRRTGGNT-VRPLLAGPDRAEKYRALMAKRAP---LYRRVAT-MRVDTNR 152 (184)
T ss_dssp GGGSH-HHHHH-HT--TSCEEEEECCHHHHHHHTTCCC-CCSSTTSCCHHHHHHHHHHHHHH---HHHHHCS-EEEECSS
T ss_pred EEcCH-HHHHH-Hc--CCeEEEEeCCHHHHHHHHhCCC-CCCCccCCCHHHHHHHHHHHHHH---HHhccCC-EEEECCC
Confidence 11111 11111 11 5689999999999999998872 12211100111222222221122 2322233 567776
Q ss_pred CChHHHHHhh
Q 040894 159 RPIEEVFDEI 168 (169)
Q Consensus 159 ~~~~~v~~~i 168 (169)
.++++++++|
T Consensus 153 ~s~ee~~~~I 162 (184)
T 2iyv_A 153 RNPGAVVRHI 162 (184)
T ss_dssp SCHHHHHHHH
T ss_pred CCHHHHHHHH
Confidence 8999999876
No 41
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=99.74 E-value=1e-17 Score=108.32 Aligned_cols=144 Identities=26% Similarity=0.318 Sum_probs=83.0
Q ss_pred CCCCChhHHHHHHHHHhCCceechhHHHHHHHhcCCcchHHHHHHHH-cCCCCCHHHHHHHHHHHHHcCCCceEEE-eCC
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHLSAGDLLEAEAESGSNDGKMIREYKK-EGKLVPSEIIVKLLQKAMQESQNKNFVI-DGF 78 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~i~-d~~ 78 (169)
+|||||||+++.|++++++++++.|++.+... + ..+++++. .+...+.......+.. +.. ...+|+ +|.
T Consensus 8 ~~GsGKsT~a~~L~~~l~~~~i~~d~~~~~~~--g----~~~~~~~~~~~~~~~~~~~~~~l~~-l~~--~~~~Vi~~g~ 78 (168)
T 2pt5_A 8 FMCSGKSTVGSLLSRSLNIPFYDVDEEVQKRE--G----LSIPQIFEKKGEAYFRKLEFEVLKD-LSE--KENVVISTGG 78 (168)
T ss_dssp CTTSCHHHHHHHHHHHHTCCEEEHHHHHHHHH--T----SCHHHHHHHSCHHHHHHHHHHHHHH-HTT--SSSEEEECCH
T ss_pred CCCCCHHHHHHHHHHHhCCCEEECcHHHHHHc--C----CCHHHHHHHhChHHHHHHHHHHHHH-Hhc--cCCeEEECCC
Confidence 68999999999999999999999999987753 2 22233322 1211111222222222 222 334555 442
Q ss_pred --CCChHHHHHHHhhcCCCCCEEEEEEcCHHHHHHHHhcCCCCCCCCc--HHHHHHHHHHHhhchhhHHHHhhhcCcEEE
Q 040894 79 --PRNEENLSAAENILKIEPNAVLVFDCSEEEMTRRILSRNQGRVDDK--IDTIKKRLNVYSESTLPVINYYSSKGKVRK 154 (169)
Q Consensus 79 --~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (169)
+........+. .++.+|||++|++++.+|+..|. .++... .+.+... |... ...+.. ..+++
T Consensus 79 ~~~~~~~~~~~l~-----~~~~~i~l~~~~e~~~~R~~~r~-~r~~~~~~~~~i~~~---~~~~----~~~~~~-~~~~i 144 (168)
T 2pt5_A 79 GLGANEEALNFMK-----SRGTTVFIDIPFEVFLERCKDSK-ERPLLKRPLDEIKNL---FEER----RKIYSK-ADIKV 144 (168)
T ss_dssp HHHTCHHHHHHHH-----TTSEEEEEECCHHHHHHHCBCTT-CCBGGGSCGGGTHHH---HHHH----HHHHTT-SSEEE
T ss_pred CEeCCHHHHHHHH-----cCCEEEEEECCHHHHHHHHhCCC-CCCCCcchHHHHHHH---HHHH----HHHHHh-CCEEE
Confidence 22222223232 27899999999999999998761 232211 1222211 2111 112333 56666
Q ss_pred EeCCCChHHHHHhh
Q 040894 155 IDAGRPIEEVFDEI 168 (169)
Q Consensus 155 id~~~~~~~v~~~i 168 (169)
+++.++++++++|
T Consensus 145 -~~~~~~~~~~~~i 157 (168)
T 2pt5_A 145 -KGEKPPEEVVKEI 157 (168)
T ss_dssp -ECSSCHHHHHHHH
T ss_pred -CCCCCHHHHHHHH
Confidence 8889999999876
No 42
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=99.74 E-value=2.3e-16 Score=104.07 Aligned_cols=156 Identities=17% Similarity=0.197 Sum_probs=86.9
Q ss_pred CCCCChhHHHHHHHHHhC-----CceechhHHHHHHHh-cCCcchHHHHHHHHcCCCCCH--HHHH----HHHHHHHHcC
Q 040894 1 GPGSGKSTQCSKIAKHLG-----FRHLSAGDLLEAEAE-SGSNDGKMIREYKKEGKLVPS--EIIV----KLLQKAMQES 68 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~-----~~~i~~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~--~~~~----~~l~~~~~~~ 68 (169)
+|||||||+++.|+++++ +.+++.|+++..... .+...+. ..+ ....+. .... ..+...+...
T Consensus 9 ~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~---~~~--~~~~~~~~~~~~~~~~~~i~~~l~~~ 83 (194)
T 1nks_A 9 IPGVGKSTVLAKVKEILDNQGINNKIINYGDFMLATALKLGYAKDR---DEM--RKLSVEKQKKLQIDAAKGIAEEARAG 83 (194)
T ss_dssp CTTSCHHHHHHHHHHHHHTTTCCEEEEEHHHHHHHHHHTTTSCSSH---HHH--TTSCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhcCceEEEEECChHHHHHHHhcccccch---hhh--hcCCHHHHHHHHHHHHHHHHHHhhcc
Confidence 699999999999999997 788888888876542 2211110 000 111111 1111 1223333112
Q ss_pred CCceEEEeCCCCChHH--------HHHHHhhcCCCCCEEEEEEcCHHHHHHH-Hhc--CCCCC-CCCcHHHHHHHHHHHh
Q 040894 69 QNKNFVIDGFPRNEEN--------LSAAENILKIEPNAVLVFDCSEEEMTRR-ILS--RNQGR-VDDKIDTIKKRLNVYS 136 (169)
Q Consensus 69 ~~~~~i~d~~~~~~~~--------~~~~~~~~~~~~~~~i~l~~~~~~~~~R-~~~--R~~~~-~~~~~~~~~~~~~~~~ 136 (169)
.+..+|+||++....+ ...+.. . .|+.+|||++|++++.+| +.. | ++ +....+.+.. .....
T Consensus 84 ~~~~vi~d~~~~~~~~~~~~~~~~~~~~~~-~--~~~~vi~l~~~~~~~~~rr~~~~~R--~~~~~~~~~~~~~-~~~~~ 157 (194)
T 1nks_A 84 GEGYLFIDTHAVIRTPSGYLPGLPSYVITE-I--NPSVIFLLEADPKIILSRQKRDTTR--NRNDYSDESVILE-TINFA 157 (194)
T ss_dssp CSSEEEEEECSEEEETTEEEESSCHHHHHH-H--CCSEEEEEECCHHHHHHHHHHCTTT--CCCCCCSHHHHHH-HHHHH
T ss_pred CCCEEEECCchhhccccccccCCCHHHHHh-c--CCCEEEEEeCCHHHHHHHHHhhccc--CCCCccCHHHHHH-HHHHH
Confidence 3778999987332111 122222 1 479999999999998866 767 7 54 3223322211 11111
Q ss_pred hchhhHHHHhhhcCcEEEE-eCCCChHHHHHhh
Q 040894 137 ESTLPVINYYSSKGKVRKI-DAGRPIEEVFDEI 168 (169)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~i-d~~~~~~~v~~~i 168 (169)
.........+. ...+++| |+++++++++++|
T Consensus 158 ~~~~~~~~~~~-~~~~~~I~d~~~~~e~v~~~I 189 (194)
T 1nks_A 158 RYAATASAVLA-GSTVKVIVNVEGDPSIAANEI 189 (194)
T ss_dssp HHHHHHHHHHH-TCEEEEEECCSSCHHHHHHHH
T ss_pred HHHHHHHHHhc-CCcEEEEeCCCCCHHHHHHHH
Confidence 11111222221 3467888 9999999999887
No 43
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=99.73 E-value=6.9e-17 Score=107.21 Aligned_cols=151 Identities=15% Similarity=0.143 Sum_probs=96.8
Q ss_pred CCCCChhHHHHHHHHHhCCceechhHHHHHHHhcCCcchHHHHHHHHcC-----CCCCHHHH------------------
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHLSAGDLLEAEAESGSNDGKMIREYKKEG-----KLVPSEII------------------ 57 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~------------------ 57 (169)
++||||||+++.|++ +|++++|.|.+.+..++++...-..+.+.++.. ..+.+...
T Consensus 17 gigsGKStv~~~l~~-~g~~vidaD~ia~~l~~~~~~~~~~i~~~fG~~~~~~dg~ldR~~L~~~vF~d~~~~~~L~~i~ 95 (210)
T 4i1u_A 17 GIGSGKTTVADLFAA-RGASLVDTDLIAHRITAPAGLAMPAIEQTFGPAFVAADGSLDRARMRALIFSDEDARRRLEAIT 95 (210)
T ss_dssp CTTSCHHHHHHHHHH-TTCEEEEHHHHHHHHTSTTCTTHHHHHHHHCGGGBCTTSSBCHHHHHHHHHHCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH-CCCcEEECcHHHHHHhcCCcHHHHHHHHHhChhhcCCCCCCcHHHHHHHHhCCHHHHHHHHHHh
Confidence 489999999999998 999999999999999888766656666555322 22333322
Q ss_pred ----HHHHHHHHHcCCCceEEEeCCCCChHHHHHHHhhcCCCCCEEEEEEcCHHHHHHHHhcCCCCCCCCcHHHHHHHHH
Q 040894 58 ----VKLLQKAMQESQNKNFVIDGFPRNEENLSAAENILKIEPNAVLVFDCSEEEMTRRILSRNQGRVDDKIDTIKKRLN 133 (169)
Q Consensus 58 ----~~~l~~~~~~~~~~~~i~d~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~~ 133 (169)
.+.+...+.......+|+|. |..++...... .+|.+|++++|++++.+|+..|. + .+.+...+++.
T Consensus 96 HP~I~~~~~~~~~~~~~~~vv~d~-pLL~E~~~~~~-----~~D~vi~V~ap~e~r~~Rl~~Rd-g---~s~eea~~ri~ 165 (210)
T 4i1u_A 96 HPLIRAETEREARDAQGPYVIFVV-PLLVESRNWKA-----RCDRVLVVDCPVDTQIARVMQRN-G---FTREQVEAIIA 165 (210)
T ss_dssp HHHHHHHHHHHHHTCCSSSEEEEC-TTCTTCHHHHH-----HCSEEEEEECCHHHHHHHHHHHH-C---CCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCCCEEEEEE-ecccccCCccc-----cCCeEEEEECCHHHHHHHHHhcC-C---CCHHHHHHHHH
Confidence 11223333333344566775 55554122122 38999999999999999999882 1 23444554443
Q ss_pred HHhhchhhHHHHhhhcCcEEEEeCC-CChHHHHHhh
Q 040894 134 VYSESTLPVINYYSSKGKVRKIDAG-RPIEEVFDEI 168 (169)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~id~~-~~~~~v~~~i 168 (169)
. ++ +..+... .++ ++|+|+ ++++++.++|
T Consensus 166 ~--Q~--~~eek~~-~AD-~VIdN~~gsle~l~~qV 195 (210)
T 4i1u_A 166 R--QA--TREARLA-AAD-DVIVNDAATPDALAVQV 195 (210)
T ss_dssp H--SC--CHHHHHH-TCS-EEEECSSCCHHHHHHHH
T ss_pred H--cC--ChHHHHH-hCC-EEEECCCCCHHHHHHHH
Confidence 2 22 1222222 234 577888 8999998876
No 44
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=99.73 E-value=3.5e-16 Score=104.33 Aligned_cols=150 Identities=17% Similarity=0.155 Sum_probs=84.3
Q ss_pred CCCCChhHHHHHHHHHhCCceechhHHHHHHHhcCCcchHHHHHHHHcCCC-----CCH------------------HH-
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHLSAGDLLEAEAESGSNDGKMIREYKKEGKL-----VPS------------------EI- 56 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~------------------~~- 56 (169)
||||||||+++.|+. +|+++++.|++++....++......+...+..... ... ..
T Consensus 10 ~~GsGKST~~~~La~-lg~~~id~d~~~~~~~~~~~~~~~~i~~~~g~~~~~~~g~~~r~~l~~~~f~~~~~~~~l~~~~ 88 (206)
T 1jjv_A 10 GIGSGKTTIANLFTD-LGVPLVDADVVAREVVAKDSPLLSKIVEHFGAQILTEQGELNRAALRERVFNHDEDKLWLNNLL 88 (206)
T ss_dssp STTSCHHHHHHHHHT-TTCCEEEHHHHHHHTTCSSCHHHHHHHHHHCTTCC------CHHHHHHHHHTCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH-CCCcccchHHHHHHHccCChHHHHHHHHHhCHHHhccCccccHHHHHHHHhCCHHHHHHHHhcc
Confidence 799999999999988 89999999999887544332222222222211111 000 00
Q ss_pred ---HHHHHHHHHHcCCCceEEEeCCCCChHHHHHHHhhcCCCCCEEEEEEcCHHHHHHHHhcCCCCCCCCcHHHHHHHHH
Q 040894 57 ---IVKLLQKAMQESQNKNFVIDGFPRNEENLSAAENILKIEPNAVLVFDCSEEEMTRRILSRNQGRVDDKIDTIKKRLN 133 (169)
Q Consensus 57 ---~~~~l~~~~~~~~~~~~i~d~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~~ 133 (169)
....+...+....+..+|+++. ...+.. +. ..+|.+|||++|++++.+|+..|. +. ..+.+.+++.
T Consensus 89 ~p~v~~~~~~~~~~~~~~~vv~~~~-~l~e~~--~~----~~~d~vi~l~~~~e~~~~Rl~~R~-~~---~~e~~~~r~~ 157 (206)
T 1jjv_A 89 HPAIRERMKQKLAEQTAPYTLFVVP-LLIENK--LT----ALCDRILVVDVSPQTQLARSAQRD-NN---NFEQIQRIMN 157 (206)
T ss_dssp HHHHHHHHHHHHHTCCSSEEEEECT-TTTTTT--CG----GGCSEEEEEECCHHHHHHHHC---------CHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCCCEEEEEec-hhhhcC--cH----hhCCEEEEEECCHHHHHHHHHHcC-CC---CHHHHHHHHH
Confidence 0111222233223557788873 322221 22 247899999999999999998872 22 3344444444
Q ss_pred HHhhchhhHHHHhhhcCcEEEEeCCCChH----HHHHhh
Q 040894 134 VYSESTLPVINYYSSKGKVRKIDAGRPIE----EVFDEI 168 (169)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~id~~~~~~----~v~~~i 168 (169)
.. .+..+.+.. ++ ++||++.+++ ++.++|
T Consensus 158 ~q----~~~~~~~~~-ad-~vIdn~~~~~~~~~~~~~~i 190 (206)
T 1jjv_A 158 SQ----VSQQERLKW-AD-DVINNDAELAQNLPHLQQKV 190 (206)
T ss_dssp HS----CCHHHHHHH-CS-EEEECCSCHHHHHHHHHHHH
T ss_pred hc----CChHHHHHh-CC-EEEECCCCccccHHHHHHHH
Confidence 31 122223332 34 5778888999 888876
No 45
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=99.72 E-value=2.6e-17 Score=107.22 Aligned_cols=144 Identities=23% Similarity=0.191 Sum_probs=82.8
Q ss_pred CCCCChhHHHHHHHHHhCCceechhHHHHHHHhcCCcchHHHHHHHH-cCCCCCHHHHHHHHHHHHHcCCCceEEEe-CC
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHLSAGDLLEAEAESGSNDGKMIREYKK-EGKLVPSEIIVKLLQKAMQESQNKNFVID-GF 78 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~i~d-~~ 78 (169)
||||||||+++.|++.+++++++.|++++... +.. +..++. .+...+.......+..+. . ...+|++ |.
T Consensus 12 ~~GsGKsTla~~La~~l~~~~~d~d~~~~~~~--g~~----~~~~~~~~g~~~~~~~~~~~~~~l~-~--~~~~vi~~g~ 82 (175)
T 1via_A 12 FMGSGKSTLARALAKDLDLVFLDSDFLIEQKF--NQK----VSEIFEQKRENFFREQEQKMADFFS-S--CEKACIATGG 82 (175)
T ss_dssp CTTSCHHHHHHHHHHHHTCEEEEHHHHHHHHH--TSC----HHHHHHHHCHHHHHHHHHHHHHHHT-T--CCSEEEECCT
T ss_pred CCCCCHHHHHHHHHHHcCCCEEcccHHHHHHc--CCC----HHHHHHHcCHHHHHHHHHHHHHHHH-c--cCCEEEECCC
Confidence 79999999999999999999999999887652 111 122221 121122222233333322 2 3445555 53
Q ss_pred CCChHHHHHHHhhcCCCCCEEEEEEcCHHHHHHHHhcCC-CCCCCCc-HHHHHHHHHHHhhchhhHHHHhhhcCcEEEEe
Q 040894 79 PRNEENLSAAENILKIEPNAVLVFDCSEEEMTRRILSRN-QGRVDDK-IDTIKKRLNVYSESTLPVINYYSSKGKVRKID 156 (169)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id 156 (169)
..... ..+.. .+.+|||++|++++.+|+..|. ..++... .+.+... |.. .. ..|..... ++||
T Consensus 83 ~~~~~--~~l~~-----~~~~i~l~~~~e~~~~R~~~r~~~~r~~~~~~~~i~~~---~~~-r~---~~y~~~~~-~~Id 147 (175)
T 1via_A 83 GFVNV--SNLEK-----AGFCIYLKADFEYLKKRLDKDEISKRPLFYDEIKAKKL---YNE-RL---SKYEQKAN-FILN 147 (175)
T ss_dssp TGGGS--TTGGG-----GCEEEEEECCHHHHTTCCCGGGTTTSCTTCCHHHHHHH---HHH-HH---HHHHHHCS-EEEE
T ss_pred CEehh--hHHhc-----CCEEEEEeCCHHHHHHHHhcccCCCCCCcccHHHHHHH---HHH-HH---HHHHhcCC-EEEE
Confidence 22221 11322 4689999999999999997762 2444332 3333322 221 11 22322233 5677
Q ss_pred CC-CChHHHHHhh
Q 040894 157 AG-RPIEEVFDEI 168 (169)
Q Consensus 157 ~~-~~~~~v~~~i 168 (169)
++ .++++++++|
T Consensus 148 t~~~~~eev~~~I 160 (175)
T 1via_A 148 IENKNIDELLSEI 160 (175)
T ss_dssp CTTCCHHHHHHHH
T ss_pred CCCCCHHHHHHHH
Confidence 76 8999999887
No 46
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=99.72 E-value=6.6e-18 Score=113.11 Aligned_cols=153 Identities=20% Similarity=0.227 Sum_probs=89.6
Q ss_pred CCCCChhHHHHHHHHHhCCceechhHHHHHHHhcCCcchHHHHHHHHcCCCCCHHHHHH-----------HHHHHHHcCC
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHLSAGDLLEAEAESGSNDGKMIREYKKEGKLVPSEIIVK-----------LLQKAMQESQ 69 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~l~~~~~~~~ 69 (169)
+|||||||+++.|+++++..+++++ +++.. ..++..+..++.++..+...+...... .+...+..
T Consensus 18 ~~GsGKST~~~~L~~~l~~~~~~~~-~~~~~-~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~-- 93 (212)
T 2wwf_A 18 LDRSGKSTQSKLLVEYLKNNNVEVK-HLYFP-NRETGIGQIISKYLKMENSMSNETIHLLFSANRWEHMNEIKSLLLK-- 93 (212)
T ss_dssp STTSSHHHHHHHHHHHHHHTTCCEE-EEESS-CTTSHHHHHHHHHHTTSSCCCHHHHHHHHHHHHHTTHHHHHHHHHH--
T ss_pred CCCCCHHHHHHHHHHHHHHcCCcEE-EEecC-CCCCcHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhC--
Confidence 6999999999999999876666552 22211 113444555555554433333322111 12333333
Q ss_pred CceEEEeCCCCCh---HH------HHHHHhh--cCCCCCEEEEEEcCHHHHHHHHhcCCCCCCCCcHHHHHHHH-HHHhh
Q 040894 70 NKNFVIDGFPRNE---EN------LSAAENI--LKIEPNAVLVFDCSEEEMTRRILSRNQGRVDDKIDTIKKRL-NVYSE 137 (169)
Q Consensus 70 ~~~~i~d~~~~~~---~~------~~~~~~~--~~~~~~~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~-~~~~~ 137 (169)
+..+|+|+++..- .. ...+... ....||.+|||++|++++.+|+.+| ..+. +.. .+.+++ ..|..
T Consensus 94 ~~~vi~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~r-~~r~-~~~-~~~~~~~~~~~~ 170 (212)
T 2wwf_A 94 GIWVVCDRYAYSGVAYSSGALNLNKTWCMNPDQGLIKPDVVFYLNVPPNYAQNRSDYG-EEIY-EKV-ETQKKIYETYKH 170 (212)
T ss_dssp TCEEEEECCHHHHHHHHHHHSCCCHHHHHGGGTTSBCCSEEEEEECCTTGGGGSTTTT-SSTT-CSH-HHHHHHHHHGGG
T ss_pred CCEEEEecchhhHHHHHHhccCCCHHHHHHHhhCCCCCCEEEEEeCCHHHHHHhhccC-cccc-cHH-HHHHHHHHHHHH
Confidence 6788999985421 00 1111110 2347899999999999999998764 1222 232 333333 33433
Q ss_pred chhhHHHHhhhcCcEEEEeCCCChHHHHHhh
Q 040894 138 STLPVINYYSSKGKVRKIDAGRPIEEVFDEI 168 (169)
Q Consensus 138 ~~~~~~~~~~~~~~~~~id~~~~~~~v~~~i 168 (169)
... ...+++||++.++++++++|
T Consensus 171 ~~~--------~~~~~~Id~~~~~~~~~~~i 193 (212)
T 2wwf_A 171 FAH--------EDYWINIDATRKIEDIHNDI 193 (212)
T ss_dssp GTT--------CTTEEEEECSSCHHHHHHHH
T ss_pred Hhc--------cCCEEEEECCCCHHHHHHHH
Confidence 221 34578999999999999876
No 47
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=99.72 E-value=9.2e-18 Score=110.67 Aligned_cols=157 Identities=17% Similarity=0.270 Sum_probs=85.3
Q ss_pred CCCCChhHHHHHHHHHhC-----CceechhHHHHHHHhcCCcchHHHHHHHHcCCCCC--HHHHHHHHHHHHHc-CCCce
Q 040894 1 GPGSGKSTQCSKIAKHLG-----FRHLSAGDLLEAEAESGSNDGKMIREYKKEGKLVP--SEIIVKLLQKAMQE-SQNKN 72 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~-----~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~-~~~~~ 72 (169)
||||||||+++.|+++++ +.+++.|++++.......... ..... ..... .......+...+.. ..+..
T Consensus 11 ~~GsGKsT~~~~L~~~l~~~g~~~~~i~~~~~~r~~~~~~~~~~-~~~~~---~~~~~~~~~~~~~~~~~~i~~~~~~~~ 86 (192)
T 1kht_A 11 VPGVGSTTSSQLAMDNLRKEGVNYKMVSFGSVMFEVAKEENLVS-DRDQM---RKMDPETQKRIQKMAGRKIAEMAKESP 86 (192)
T ss_dssp CTTSCHHHHHHHHHHHHHTTTCCCEEEEHHHHHHHHHHHTTSCS-SGGGG---SSCCHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred CCCCCHHHHHHHHHHHHHhcCcceEEEehHHHHHHHHhccCCCC-CHHHH---hcCCHHHHHHHHHHHHHHHHhhccCCe
Confidence 699999999999999998 899999999887643211100 00000 00000 01111112122211 12567
Q ss_pred EEEeCCCCC--hHHH------HHHHhhcCCCCCEEEEEEcCHHHHHH-HHhc--CCCCCCCCcHHHHHHHHHHHhhchhh
Q 040894 73 FVIDGFPRN--EENL------SAAENILKIEPNAVLVFDCSEEEMTR-RILS--RNQGRVDDKIDTIKKRLNVYSESTLP 141 (169)
Q Consensus 73 ~i~d~~~~~--~~~~------~~~~~~~~~~~~~~i~l~~~~~~~~~-R~~~--R~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (169)
+|+||++.. .... ..+.. . .|+++|||++|++++.+ |+.. | +++....+.+..... .......
T Consensus 87 viid~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~i~l~~~~~~~~~rRl~~~~R--~r~~~~~~~~~~~~~-~~~~~~~ 160 (192)
T 1kht_A 87 VAVDTHSTVSTPKGYLPGLPSWVLNE-L--NPDLIIVVETTGDEILMRRMSDETR--VRDLDTASTIEQHQF-MNRCAAM 160 (192)
T ss_dssp EEEECCSEEEETTEEEESSCHHHHHH-H--CCSEEEEEECCHHHHHHHHHTSSSC--SSSCCCHHHHHHHHH-HHHHHHH
T ss_pred EEEccceeccccccccccCcHHHHhc-c--CCCEEEEEeCCHHHHHHHHhhhccc--CCCcCCHHHHHHHHH-HHHHHHH
Confidence 889986431 0000 11121 1 37899999999999996 9987 6 565555443332211 2222222
Q ss_pred HHHHhhhcCcEEEE-eCCCChHHHHHhh
Q 040894 142 VINYYSSKGKVRKI-DAGRPIEEVFDEI 168 (169)
Q Consensus 142 ~~~~~~~~~~~~~i-d~~~~~~~v~~~i 168 (169)
.+..+.. ..++++ +.+.++++++++|
T Consensus 161 ~~~~~~~-~~~~~i~~~~~~~e~~~~~i 187 (192)
T 1kht_A 161 SYGVLTG-ATVKIVQNRNGLLDQAVEEL 187 (192)
T ss_dssp HHHHHHC-CEEEEEECCTTCHHHHHHHH
T ss_pred HHHHhcC-CcEEEEeCCCCCHHHHHHHH
Confidence 2223322 345555 4456799999876
No 48
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=99.72 E-value=5.7e-17 Score=108.73 Aligned_cols=155 Identities=19% Similarity=0.229 Sum_probs=81.9
Q ss_pred CCCCChhHHHHHHHHHhCCceechhHHHHHHHhcCCcchHHHHHHHHcCCCCCHHHHH-----------HHHHHHHHcCC
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHLSAGDLLEAEAESGSNDGKMIREYKKEGKLVPSEIIV-----------KLLQKAMQESQ 69 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~l~~~~~~~~ 69 (169)
+|||||||+++.|+++++..+++++.+ +.. ..++..+..++.++..+...+..... +.+...+..
T Consensus 17 ~~GsGKsT~~~~L~~~l~~~~~~v~~~-~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~r~~~~~~i~~~l~~-- 92 (215)
T 1nn5_A 17 VDRAGKSTQSRKLVEALCAAGHRAELL-RFP-ERSTEIGKLLSSYLQKKSDVEDHSVHLLFSANRWEQVPLIKEKLSQ-- 92 (215)
T ss_dssp STTSSHHHHHHHHHHHHHHTTCCEEEE-ESS-CTTSHHHHHHHHHHTTSSCCCHHHHHHHHHHHHHTTHHHHHHHHHT--
T ss_pred CCCCCHHHHHHHHHHHHHHcCCcEEEe-eCC-CCCCcHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHC--
Confidence 689999999999999886544443211 110 01233455556655443333332111 123333333
Q ss_pred CceEEEeCCCC------------ChHHHHHHHhhcCCCCCEEEEEEcCHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHhh
Q 040894 70 NKNFVIDGFPR------------NEENLSAAENILKIEPNAVLVFDCSEEEMTRRILSRNQGRVDDKIDTIKKRLNVYSE 137 (169)
Q Consensus 70 ~~~~i~d~~~~------------~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~ 137 (169)
+..+|+|++.. .......+.. ....|+.+|||++|++++.+|+.+| ..+ .+..+........|..
T Consensus 93 ~~~vi~dr~~~s~~~~~~~~~~~~~~~~~~l~~-~~~~~d~vi~l~~~~e~~~~Rl~r~-~~~-~~~~~~~~~~~~~~~~ 169 (215)
T 1nn5_A 93 GVTLVVDRYAFSGVAFTGAKENFSLDWCKQPDV-GLPKPDLVLFLQLQLADAAKRGAFG-HER-YENGAFQERALRCFHQ 169 (215)
T ss_dssp TCEEEEESCHHHHHHHHHTSTTCCHHHHHGGGT-TSBCCSEEEEEECCHHHHHHC------CT-TCSHHHHHHHHHHHHH
T ss_pred CCEEEEeCCcccHHHHHhhcCCCCHHHHHHHHh-CCCCCCEEEEEeCCHHHHHHHhccC-ccc-cchHHHHHHHHHHHHH
Confidence 67788896421 1111111222 2346899999999999999999643 122 2222222211122222
Q ss_pred chhhHHHHhhhcCcEEEEeCCCChHHHHHhh
Q 040894 138 STLPVINYYSSKGKVRKIDAGRPIEEVFDEI 168 (169)
Q Consensus 138 ~~~~~~~~~~~~~~~~~id~~~~~~~v~~~i 168 (169)
.... ....+++||++.+++++.++|
T Consensus 170 ~~~~------~~~~~~~Id~~~~~e~~~~~i 194 (215)
T 1nn5_A 170 LMKD------TTLNWKMVDASKSIEAVHEDI 194 (215)
T ss_dssp HTTC------TTSCEEEEETTSCHHHHHHHH
T ss_pred HHHh------CCCCEEEEECCCCHHHHHHHH
Confidence 1110 124678999999999999876
No 49
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=99.71 E-value=2.4e-16 Score=105.43 Aligned_cols=149 Identities=15% Similarity=0.187 Sum_probs=80.8
Q ss_pred CCCCChhHHHHHHHHHhCCc--eec----hhHHHHHHHhcCCcchHHHHHHHHcC--CCCCHHH--H-----H----HHH
Q 040894 1 GPGSGKSTQCSKIAKHLGFR--HLS----AGDLLEAEAESGSNDGKMIREYKKEG--KLVPSEI--I-----V----KLL 61 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~--~i~----~d~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~--~-----~----~~l 61 (169)
+|||||||+++.|+++++.. ++. .++.++..+..+ .. ...+... . . ..+
T Consensus 12 ~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~~~~i~~~~~~~------------~~~~~~~~~~~~~~~~~~r~~~~~~~i 79 (213)
T 2plr_A 12 IDGSGKSSQATLLKDWIELKRDVYLTEWNSSDWIHDIIKEA------------KKKDLLTPLTFSLIHATDFSDRYERYI 79 (213)
T ss_dssp CTTSSHHHHHHHHHHHHTTTSCEEEEETTCCCHHHHHHHHH------------TTTSCCCHHHHHHHHHHHHHHHHHHTH
T ss_pred CCCCCHHHHHHHHHHHHhhcCCEEEecCCcHHHHHHHHhcc------------ccccCCCHHHHHHHHHHHHHHHHHHHH
Confidence 69999999999999999874 433 122232222110 00 0111100 0 1 112
Q ss_pred HHHHHcCCCceEEEeCCCCCh-----------HHHHHHHhhcCCCCCEEEEEEcCHHHHHHHHh-cCCC-CCC-------
Q 040894 62 QKAMQESQNKNFVIDGFPRNE-----------ENLSAAENILKIEPNAVLVFDCSEEEMTRRIL-SRNQ-GRV------- 121 (169)
Q Consensus 62 ~~~~~~~~~~~~i~d~~~~~~-----------~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~-~R~~-~~~------- 121 (169)
...+.. +..+|+|+|+... .....+.. ....++++|||++|++++.+|+. +|.. .+.
T Consensus 80 ~~~l~~--g~~vi~D~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~vi~l~~~~e~~~~Rl~~~R~~~~~~~~g~~~~ 156 (213)
T 2plr_A 80 LPMLKS--GFIVISDRYIYTAYARDSVRGVDIDWVKKLYS-FAIKPDITFYIRVSPDIALERIKKSKRKIKPQEAGADIF 156 (213)
T ss_dssp HHHHHT--TCEEEEESCHHHHHHHHHTTTCCHHHHHHHTT-TSCCCSEEEEEECCHHHHHHHHHHTTCCCCTTTTTTTTC
T ss_pred HHHHhC--CCEEEEeCcHhHHHHHHHhhCCCHHHHHHHHh-cCCCCCEEEEEeCCHHHHHHHHhcccccccccccccccc
Confidence 223332 6788999986532 11222323 34568999999999999999998 7721 120
Q ss_pred --CCcHHHHHHHHHHHhhchhhHHHHhhhcCcEEEEeCCCChHHHHHhh
Q 040894 122 --DDKIDTIKKRLNVYSESTLPVINYYSSKGKVRKIDAGRPIEEVFDEI 168 (169)
Q Consensus 122 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~v~~~i 168 (169)
.+..+.. ..+.+.....+..+.....+++||++.+++++.++|
T Consensus 157 ~~~d~~e~~----~~~~~r~~~~~~~~~~~~~~~~Id~~~~~e~v~~~I 201 (213)
T 2plr_A 157 PGLSPEEGF----LKYQGLITEVYDKLVKDENFIVIDGTKTPKEIQIQI 201 (213)
T ss_dssp TTSCHHHHH----HHHHHHHHHHHHHHTTTTTCEEEETTSCHHHHHHHH
T ss_pred cccchhhhH----HHHHHHHHHHHHHHHhhCCEEEEECCCCHHHHHHHH
Confidence 0001111 122222222222222222678999999999999886
No 50
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=99.70 E-value=3.8e-16 Score=101.97 Aligned_cols=148 Identities=21% Similarity=0.188 Sum_probs=82.2
Q ss_pred CCCCChhHHHHHHHH-HhCCceechhHHHHHHHhcCCc-----chHHHHHHHHcCCCCCHHHHHHHHHHHHHc-CCCceE
Q 040894 1 GPGSGKSTQCSKIAK-HLGFRHLSAGDLLEAEAESGSN-----DGKMIREYKKEGKLVPSEIIVKLLQKAMQE-SQNKNF 73 (169)
Q Consensus 1 ~~GsGKsTla~~La~-~~~~~~i~~d~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~ 73 (169)
||||||||+++.|++ .+++.+++.|.+.... ...+. +...... .........+...+.. ..+..+
T Consensus 10 ~~GsGKST~a~~L~~~~~~~~~i~~d~~r~~~-~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~l~~~~~g~~v 81 (181)
T 1ly1_A 10 CPGSGKSTWAREFIAKNPGFYNINRDDYRQSI-MAHEERDEYKYTKKKEG-------IVTGMQFDTAKSILYGGDSVKGV 81 (181)
T ss_dssp CTTSSHHHHHHHHHHHSTTEEEECHHHHHHHH-TTSCCGGGCCCCHHHHH-------HHHHHHHHHHHHHHTSCSSCCEE
T ss_pred CCCCCHHHHHHHHHhhcCCcEEecHHHHHHHh-hCCCccchhhhchhhhh-------HHHHHHHHHHHHHHhhccCCCeE
Confidence 799999999999999 6889999986654433 22111 1111000 0112234455555532 237889
Q ss_pred EEeCCCCChHHHHHHHhh--cCCCCCEEEEEEcCHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHhhchhhHHHHhhhcCc
Q 040894 74 VIDGFPRNEENLSAAENI--LKIEPNAVLVFDCSEEEMTRRILSRNQGRVDDKIDTIKKRLNVYSESTLPVINYYSSKGK 151 (169)
Q Consensus 74 i~d~~~~~~~~~~~~~~~--~~~~~~~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (169)
|+|+++........+... ....+..+|||++|++++.+|+..| +......+.+.+++..|..... ..
T Consensus 82 i~d~~~~~~~~~~~l~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R--~~~~~~~~~i~~~~~~~~~~~~---------~~ 150 (181)
T 1ly1_A 82 IISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPWTELVKRNSKR--GTKAVPIDVLRSMYKSMREYLG---------LP 150 (181)
T ss_dssp EECSCCCSHHHHHHHHHHHHHHTCEEEEEECCCCHHHHHHHHTTC--GGGCCCHHHHHHHHHHHHHHHT---------CC
T ss_pred EEeCCCCCHHHHHHHHHHHHHcCCCEEEEEEeCCHHHHHHHHhcc--ccCCCCHHHHHHHHHHhhccCC---------CC
Confidence 999988776555444421 1223457999999999999999988 3223455667766666665411 11
Q ss_pred EEEEeCCCChHHHHHhh
Q 040894 152 VRKIDAGRPIEEVFDEI 168 (169)
Q Consensus 152 ~~~id~~~~~~~v~~~i 168 (169)
.+++|++.+ +++...|
T Consensus 151 ~~~id~~~~-~~v~~~i 166 (181)
T 1ly1_A 151 VYNGTPGKP-KAVIFDV 166 (181)
T ss_dssp CC---------------
T ss_pred ccccCCCCC-ceeeehh
Confidence 234677664 6665544
No 51
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=99.70 E-value=2.1e-16 Score=104.32 Aligned_cols=110 Identities=15% Similarity=0.154 Sum_probs=66.6
Q ss_pred CCCCChhHHHHHHHHHhCCceechhHHHHHHHhcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCCceEEEeCCCC
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHLSAGDLLEAEAESGSNDGKMIREYKKEGKLVPSEIIVKLLQKAMQESQNKNFVIDGFPR 80 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~d~~~~ 80 (169)
+|||||||+++.|++.+++.+++.|.+...........+......+.. .........+...+.. +..+|+|++..
T Consensus 13 ~~GsGKST~~~~L~~~l~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~--g~~vi~d~~~~ 87 (193)
T 2rhm_A 13 HPATGKTTLSQALATGLRLPLLSKDAFKEVMFDGLGWSDREWSRRVGA---TAIMMLYHTAATILQS--GQSLIMESNFR 87 (193)
T ss_dssp STTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHHHHCCCSHHHHHHHHH---HHHHHHHHHHHHHHHT--TCCEEEEECCC
T ss_pred CCCCCHHHHHHHHHHHcCCeEecHHHHHHHHHHhcCccchHHHHHhhH---HHHHHHHHHHHHHHhC--CCeEEEecCCC
Confidence 699999999999999999999999877654422100001000000000 0001112223333433 67899999763
Q ss_pred ChHHHHH---HHhhcCCCCCEEEEEEcCHHHHHHHHhcC
Q 040894 81 NEENLSA---AENILKIEPNAVLVFDCSEEEMTRRILSR 116 (169)
Q Consensus 81 ~~~~~~~---~~~~~~~~~~~~i~l~~~~~~~~~R~~~R 116 (169)
....... +.. ....++.+|||++|++++.+|+..|
T Consensus 88 ~~~~~~~~~~l~~-~~~~~~~~v~l~~~~e~~~~R~~~R 125 (193)
T 2rhm_A 88 VDLDTERMQNLHT-IAPFTPIQIRCVASGDVLVERILSR 125 (193)
T ss_dssp HHHHHHHHHHHHH-HSCCEEEEEEEECCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH-hcCCeEEEEEEeCCHHHHHHHHHHh
Confidence 2111122 333 4456889999999999999999887
No 52
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=99.69 E-value=2.3e-16 Score=105.02 Aligned_cols=149 Identities=17% Similarity=0.223 Sum_probs=85.8
Q ss_pred CCCCChhHHHHHHHHHh-CCceechhHHHHHHHhcCCcchHHHHHHHHcCCCCCHHHH-----------HHHHHHHHHcC
Q 040894 1 GPGSGKSTQCSKIAKHL-GFRHLSAGDLLEAEAESGSNDGKMIREYKKEGKLVPSEII-----------VKLLQKAMQES 68 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~-~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~l~~~~~~~ 68 (169)
+|||||||+++.|++++ |+.+++.+... .++..+..++.++..+........ ...+...+..
T Consensus 12 ~~GsGKsT~~~~L~~~l~g~~~~~~~~~~-----~~~~~g~~i~~~~~~~~~~~~~~~~~l~~~~r~~~~~~i~~~l~~- 85 (204)
T 2v54_A 12 LDKSGKTTQCMNIMESIPANTIKYLNFPQ-----RSTVTGKMIDDYLTRKKTYNDHIVNLLFCANRWEFASFIQEQLEQ- 85 (204)
T ss_dssp CTTSSHHHHHHHHHHTSCGGGEEEEESSC-----TTSHHHHHHHHHHTSSCCCCHHHHHHHHHHHHHTTHHHHHHHHHT-
T ss_pred CCCCCHHHHHHHHHHHHCCCceEEEecCC-----CCCcHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHC-
Confidence 69999999999999998 57777643111 022345566666654332322211 0112233332
Q ss_pred CCceEEEeCCCCCh-----------HHHHHHHhhcCCCCCEEEEEEcCHHHHHHHHhcCCCCCCCCcHHHHHHHHH-HHh
Q 040894 69 QNKNFVIDGFPRNE-----------ENLSAAENILKIEPNAVLVFDCSEEEMTRRILSRNQGRVDDKIDTIKKRLN-VYS 136 (169)
Q Consensus 69 ~~~~~i~d~~~~~~-----------~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~~-~~~ 136 (169)
+..+|+|+|+... .....+.. ....||.+|||++|++++.+ +|...+. +.. .+.+++. .|.
T Consensus 86 -~~~vi~Dr~~~s~~~~~~~~g~~~~~~~~~~~-~~~~~d~vi~l~~~~e~~~~---~R~~d~~-e~~-~~~~rl~~~y~ 158 (204)
T 2v54_A 86 -GITLIVDRYAFSGVAYAAAKGASMTLSKSYES-GLPKPDLVIFLESGSKEINR---NVGEEIY-EDV-TFQQKVLQEYK 158 (204)
T ss_dssp -TCEEEEESCHHHHHHHHHHTTCCHHHHHHHHT-TSBCCSEEEEECCCHHHHTT---CCSSSTT-CCS-HHHHHHHHHHH
T ss_pred -CCEEEEECchhhHHHHHHccCCCHHHHHHHhc-CCCCCCEEEEEeCCHHHHHh---hcCcccc-cHH-HHHHHHHHHHH
Confidence 6778899986421 11222222 33579999999999999987 4411121 211 2333332 233
Q ss_pred hchhhHHHHhhhcCcEEEEeCCCChHHHHHhh
Q 040894 137 ESTLPVINYYSSKGKVRKIDAGRPIEEVFDEI 168 (169)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~id~~~~~~~v~~~i 168 (169)
.... . ....+++||++.++++++++|
T Consensus 159 ~~~~----~--~~~~~~~Id~~~~~~~v~~~i 184 (204)
T 2v54_A 159 KMIE----E--GDIHWQIISSEFEEDVKKELI 184 (204)
T ss_dssp HHHT----T--CSSCEEEECTTSCHHHHHHHH
T ss_pred HHHH----h--CCCcEEEEECCCCHHHHHHHH
Confidence 3211 1 124678999999999999876
No 53
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=99.68 E-value=1.6e-14 Score=93.89 Aligned_cols=146 Identities=18% Similarity=0.145 Sum_probs=81.7
Q ss_pred CCCCChhHHHHHHHHHhCCceechhHHHHHH----HhcCCcchH-HHHHHHHcCCCCCHHHHHHHHHHHHHcCCCceEEE
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHLSAGDLLEAE----AESGSNDGK-MIREYKKEGKLVPSEIIVKLLQKAMQESQNKNFVI 75 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i~~d~~~~~~----~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~ 75 (169)
||||||||+++.|+..+|..+++.|++.... ...+..... .....+ ......+...+.. +..+|+
T Consensus 16 ~~GsGKSTl~~~l~~~~g~~~i~~d~~~~~~~~~~~~~g~~~~~~~~~~~~--------~~~~~~~~~~~~~--~~~~vi 85 (175)
T 1knq_A 16 VSGSGKSAVASEVAHQLHAAFLDGDFLHPRRNIEKMASGEPLNDDDRKPWL--------QALNDAAFAMQRT--NKVSLI 85 (175)
T ss_dssp STTSCHHHHHHHHHHHHTCEEEEGGGGCCHHHHHHHHTTCCCCHHHHHHHH--------HHHHHHHHHHHHH--CSEEEE
T ss_pred CCCCCHHHHHHHHHHhhCcEEEeCccccchHHHHHhhcCcCCCccccccHH--------HHHHHHHHHHHhc--CCcEEE
Confidence 6999999999999999999999988764221 011111110 000000 0111222333332 567888
Q ss_pred eCCCCChHHHHHHHhhcCCCCC-EEEEEEcCHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHhhchhhHHHHhhhcCcEEE
Q 040894 76 DGFPRNEENLSAAENILKIEPN-AVLVFDCSEEEMTRRILSRNQGRVDDKIDTIKKRLNVYSESTLPVINYYSSKGKVRK 154 (169)
Q Consensus 76 d~~~~~~~~~~~~~~~~~~~~~-~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (169)
|...........+.. . . ++ .+|||++|++++.+|+..| +........+...+..+... .|. ....++
T Consensus 86 ~~~~~~~~~~~~l~~-~-~-~~~~vv~l~~~~e~~~~R~~~R--~~~~~~~~~~~~~~~~~~~~------~~~-~~~~~~ 153 (175)
T 1knq_A 86 VCSALKKHYRDLLRE-G-N-PNLSFIYLKGDFDVIESRLKAR--KGHFFKTQMLVTQFETLQEP------GAD-ETDVLV 153 (175)
T ss_dssp ECCCCSHHHHHHHHT-T-C-TTEEEEEEECCHHHHHHHHHTS--TTCCCCHHHHHHHHHHCCCC------CTT-CTTEEE
T ss_pred EeCchHHHHHHHHHh-c-C-CCEEEEEEECCHHHHHHHHHhc--cCCCCchHHHHHHHHhhhCc------ccC-CCCeEE
Confidence 742222333333332 1 2 34 7999999999999999988 32222233333222222211 022 224578
Q ss_pred EeCCCChHHHHHhh
Q 040894 155 IDAGRPIEEVFDEI 168 (169)
Q Consensus 155 id~~~~~~~v~~~i 168 (169)
||++.++++++++|
T Consensus 154 Id~~~~~~~~~~~i 167 (175)
T 1knq_A 154 VDIDQPLEGVVAST 167 (175)
T ss_dssp EECSSCHHHHHHHH
T ss_pred EeCCCCHHHHHHHH
Confidence 88889999999876
No 54
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=99.68 E-value=6.5e-16 Score=105.65 Aligned_cols=152 Identities=21% Similarity=0.193 Sum_probs=88.5
Q ss_pred CCCCChhHHHHHHHHHhCCceechhHHHHHHHhcCCcchHHHHHHH-HcCCCCCHHHHHHHHHHHHHcCCCceEEEeC--
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHLSAGDLLEAEAESGSNDGKMIREYK-KEGKLVPSEIIVKLLQKAMQESQNKNFVIDG-- 77 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~i~d~-- 77 (169)
||||||||+++.|++.+|+.+++.|.+++... . +..+..++ ..+...++....+.+..+.... ...+|..|
T Consensus 56 ~~GsGKSTl~~~La~~lg~~~~d~d~~~~~~~-~----g~~i~~i~~~~ge~~fr~~e~~~l~~l~~~~-~~~Via~GgG 129 (250)
T 3nwj_A 56 MMGSGKTTVGKIMARSLGYTFFDCDTLIEQAM-K----GTSVAEIFEHFGESVFREKETEALKKLSLMY-HQVVVSTGGG 129 (250)
T ss_dssp STTSCHHHHHHHHHHHHTCEEEEHHHHHHHHS-T----TSCHHHHHHHHCHHHHHHHHHHHHHHHHHHC-SSEEEECCGG
T ss_pred CCCCCHHHHHHHHHHhcCCcEEeCcHHHHHHh-c----CccHHHHHHHhCcHHHHHHHHHHHHHHHhhc-CCcEEecCCC
Confidence 69999999999999999999999999988763 1 22233333 2244444455555566655431 23444443
Q ss_pred CCCChHHHHHHHhhcCCCCCEEEEEEcCHHHHHHHHhcC-CCCCCC-------CcHHHHHHHHHHHhhchhhHHHHhhhc
Q 040894 78 FPRNEENLSAAENILKIEPNAVLVFDCSEEEMTRRILSR-NQGRVD-------DKIDTIKKRLNVYSESTLPVINYYSSK 149 (169)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R-~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (169)
.+........+ . .+.+|||++|++++.+|+.++ ...|+. +..+.....+..+.....+. |..
T Consensus 130 ~v~~~~~~~~l-~-----~~~vV~L~a~~e~l~~Rl~~~~~~~Rpl~~~~~~~d~~~~~~~~l~~l~~eR~~l---Y~~- 199 (250)
T 3nwj_A 130 AVIRPINWKYM-H-----KGISIWLDVPLEALAHRIAAVGTGSRPLLHDDESGDTYTAALNRLSTIWDARGEA---YTK- 199 (250)
T ss_dssp GGGSHHHHHHH-T-----TSEEEEEECCHHHHHHHHHC----------------CHHHHHHHHHHHHHHHHHH---HTT-
T ss_pred eecCHHHHHHH-h-----CCcEEEEECCHHHHHHHHhhcCCCCCCcccCCCcccchhhHHHHHHHHHHHHHHH---Hhh-
Confidence 33333333322 2 378999999999999999863 112321 11111223333333333333 443
Q ss_pred CcEEE------------EeCCCChHHHHHhh
Q 040894 150 GKVRK------------IDAGRPIEEVFDEI 168 (169)
Q Consensus 150 ~~~~~------------id~~~~~~~v~~~i 168 (169)
...++ .+++.++++++++|
T Consensus 200 ad~vi~~~~~~~~~~~iDTs~~s~eev~~~I 230 (250)
T 3nwj_A 200 ASARVSLENITLKLGYRSVSDLTPAEIAIEA 230 (250)
T ss_dssp SSEEEEHHHHHHHHTCSSGGGCCHHHHHHHH
T ss_pred CCEEEEecccccccccccCCCCCHHHHHHHH
Confidence 34444 33578999999876
No 55
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=99.68 E-value=6.8e-15 Score=97.73 Aligned_cols=144 Identities=15% Similarity=0.158 Sum_probs=82.9
Q ss_pred CCCCChhHHHHHHHHHhCCceechhHHHHHHHhcCCcchHHHHHHHHcCCCCCHHH-------HHHHHHHHHHcCCCceE
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHLSAGDLLEAEAESGSNDGKMIREYKKEGKLVPSEI-------IVKLLQKAMQESQNKNF 73 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~~~~~~ 73 (169)
||||||||+++.|+..+|..+++.|++..... ... ...+....... ....+...+.. +..+
T Consensus 37 ~~GsGKSTl~~~L~~~~g~~~i~~d~~~~~~~---------~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--g~~v 104 (200)
T 4eun_A 37 VSGSGKTTIAHGVADETGLEFAEADAFHSPEN---------IAT-MQRGIPLTDEDRWPWLRSLAEWMDARADA--GVST 104 (200)
T ss_dssp CTTSCHHHHHHHHHHHHCCEEEEGGGGSCHHH---------HHH-HHTTCCCCHHHHHHHHHHHHHHHHHHHHT--TCCE
T ss_pred CCCCCHHHHHHHHHHhhCCeEEcccccccHHH---------HHH-HhcCCCCCCcccccHHHHHHHHHHHHHhc--CCCE
Confidence 79999999999999999999999887642210 000 01111111111 11222222222 5667
Q ss_pred EEeCCCCChHHHHHHHhhcCCCCCEEEEEEcCHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHhhchhhHHHHhhhcCcEE
Q 040894 74 VIDGFPRNEENLSAAENILKIEPNAVLVFDCSEEEMTRRILSRNQGRVDDKIDTIKKRLNVYSESTLPVINYYSSKGKVR 153 (169)
Q Consensus 74 i~d~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (169)
|+|...........+.. ...+..+|||++|++++.+|+..| +......+.+...+..+... +. ....+
T Consensus 105 iid~~~~~~~~~~~l~~--~~~~~~vv~l~~~~e~l~~Rl~~R--~~~~~~~~~l~~~~~~~~~~-------~~-~~~~~ 172 (200)
T 4eun_A 105 IITCSALKRTYRDVLRE--GPPSVDFLHLDGPAEVIKGRMSKR--EGHFMPASLLQSQLATLEAL-------EP-DESGI 172 (200)
T ss_dssp EEEECCCCHHHHHHHTT--SSSCCEEEEEECCHHHHHHHHTTC--SCCSSCGGGHHHHHHHCCCC-------CT-TSCEE
T ss_pred EEEchhhhHHHHHHHHH--hCCceEEEEEeCCHHHHHHHHHhc--ccCCCCHHHHHHHHHHhCCC-------CC-CCCeE
Confidence 77764344333333333 223568999999999999999988 22222233333333222211 21 12467
Q ss_pred EEeCCCChHHHHHhh
Q 040894 154 KIDAGRPIEEVFDEI 168 (169)
Q Consensus 154 ~id~~~~~~~v~~~i 168 (169)
+||++.++++++++|
T Consensus 173 ~Id~~~~~~e~~~~I 187 (200)
T 4eun_A 173 VLDLRQPPEQLIERA 187 (200)
T ss_dssp EEETTSCHHHHHHHH
T ss_pred EEECCCCHHHHHHHH
Confidence 889999999999876
No 56
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=99.67 E-value=2.5e-15 Score=101.08 Aligned_cols=150 Identities=21% Similarity=0.238 Sum_probs=86.1
Q ss_pred CCCCChhHHHHHHHHHhCCceechhHHHHHHHhcCCcchHHHHHHHHc-----CCCCCHHHHH-----------------
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHLSAGDLLEAEAESGSNDGKMIREYKKE-----GKLVPSEIIV----------------- 58 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~----------------- 58 (169)
++||||||+++.|++ +|+++++.|++++....++......+...+.. ..........
T Consensus 12 ~~GSGKST~~~~L~~-lg~~~id~D~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~~~~l~~~~f~~~~~~~~l~~~~ 90 (218)
T 1vht_A 12 GIGSGKSTVANAFAD-LGINVIDADIIARQVVEPGAPALHAIADHFGANMIAADGTLQRRALRERIFANPEEKNWLNALL 90 (218)
T ss_dssp CTTSCHHHHHHHHHH-TTCEEEEHHHHHHHTTSTTCTHHHHHHHHHCGGGBCTTSCBCHHHHHHHHHTCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH-cCCEEEEccHHHHHHhcCChHHHHHHHHHhHHHHcCCCCCCCHHHHHHHHhCCHHHHHHHHHhH
Confidence 689999999999998 99999999999987655544333334433321 1112221111
Q ss_pred -HHH----HHHHHcCCCceEEEeCCCCChHHHHHHHhhcCCCCCEEEEEEcCHHHHHHHHhcCCCCCCCCcHHHHHHHHH
Q 040894 59 -KLL----QKAMQESQNKNFVIDGFPRNEENLSAAENILKIEPNAVLVFDCSEEEMTRRILSRNQGRVDDKIDTIKKRLN 133 (169)
Q Consensus 59 -~~l----~~~~~~~~~~~~i~d~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~~ 133 (169)
..+ ...+....+..+|+++ |...... +.. .+|.+|||++|++++.+|+..| +. ...+.+.+++.
T Consensus 91 ~p~v~~~~~~~~~~~~~~~vi~~~-~~l~~~~--~~~----~~d~vi~l~~~~e~~~~Rl~~R--~~--~~~~~~~~~~~ 159 (218)
T 1vht_A 91 HPLIQQETQHQIQQATSPYVLWVV-PLLVENS--LYK----KANRVLVVDVSPETQLKRTMQR--DD--VTREHVEQILA 159 (218)
T ss_dssp HHHHHHHHHHHHHHCCSSEEEEEC-TTTTTTT--GGG----GCSEEEEEECCHHHHHHHHHHH--HT--CCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCCCEEEEEe-eeeeccC--ccc----cCCEEEEEECCHHHHHHHHHHc--CC--CCHHHHHHHHH
Confidence 111 1112222233455555 3332221 222 4789999999999999999887 21 12334444443
Q ss_pred HHhhchhhHHHHhhhcCcEEEEeCCCChHHHHHhh
Q 040894 134 VYSESTLPVINYYSSKGKVRKIDAGRPIEEVFDEI 168 (169)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~id~~~~~~~v~~~i 168 (169)
.. .+...... .++ ++||++.+++++.++|
T Consensus 160 ~~----~~~~~~~~-~ad-~vId~~~~~~~~~~~I 188 (218)
T 1vht_A 160 AQ----ATREARLA-VAD-DVIDNNGAPDAIASDV 188 (218)
T ss_dssp HS----CCHHHHHH-HCS-EEEECSSCTTSHHHHH
T ss_pred hc----CChHHHHH-hCC-EEEECCCCHHHHHHHH
Confidence 31 11222222 223 5778888999998876
No 57
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=99.66 E-value=1.4e-15 Score=101.30 Aligned_cols=149 Identities=19% Similarity=0.233 Sum_probs=85.9
Q ss_pred CCCCChhHHHHHHHHHhCCceechhHHHHHHHhcCCcchHHHHHHHHcCC-----CCCHHHH------------------
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHLSAGDLLEAEAESGSNDGKMIREYKKEGK-----LVPSEII------------------ 57 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~------------------ 57 (169)
|+||||||+++.|++ +|+.+++.|++++....++......+...+.... .......
T Consensus 9 ~~GsGKSTl~~~L~~-~g~~~i~~d~~~~~~~~~~~~~~~~i~~~~g~~~~~~~g~~~r~~l~~~~f~~~~~~~~l~~l~ 87 (204)
T 2if2_A 9 NIGCGKSTVAQMFRE-LGAYVLDADKLIHSFYRKGHPVYEEVVKTFGKGILDEEGNIDRKKLADIVFKDEEKLRKLEEIT 87 (204)
T ss_dssp CTTSSHHHHHHHHHH-TTCEEEEHHHHHHGGGSSSSHHHHHHHHHHCTTTTEETTEECHHHHHHTTSSCHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHH-CCCEEEEccHHHHHHhcCCHHHHHHHHHHhCHHhhCCCCcCCHHHHHHHHhCCHHHHHHHHHhh
Confidence 699999999999999 9999999999988654433222222222221110 1111111
Q ss_pred H----HHHHHHHHcCCC-ceEEEeCCCCChHHHHHHHhhcCCCCCEEEEEEcCHHHHHHHHhcCCCCCCCCcHHHHHHHH
Q 040894 58 V----KLLQKAMQESQN-KNFVIDGFPRNEENLSAAENILKIEPNAVLVFDCSEEEMTRRILSRNQGRVDDKIDTIKKRL 132 (169)
Q Consensus 58 ~----~~l~~~~~~~~~-~~~i~d~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~ 132 (169)
. ..+...+....+ ..+|+|+. ..... .+. ..++.+|||++|++++.+|+..| +. ..+.+.+++
T Consensus 88 ~~~v~~~~~~~~~~~~~~~~vive~~-~l~~~--~~~----~~~~~~i~l~~~~e~~~~Rl~~R--~~---~~~~~~~~~ 155 (204)
T 2if2_A 88 HRALYKEIEKITKNLSEDTLFILEAS-LLVEK--GTY----KNYDKLIVVYAPYEVCKERAIKR--GM---SEEDFERRW 155 (204)
T ss_dssp HHHHTTTHHHHHHHSCTTCCEEEECS-CSTTT--TCG----GGSSEEEEECCCHHHHHHHHHHT--CC---CHHHHHHHH
T ss_pred CHHHHHHHHHHHHhccCCCEEEEEcc-ccccC--Cch----hhCCEEEEEECCHHHHHHHHHHc--CC---CHHHHHHHH
Confidence 0 111222222233 67788874 21111 111 23789999999999999999987 43 223333333
Q ss_pred HHHhhchhhHHHHhhhcCcEEEEeCCCChHHHHHhh
Q 040894 133 NVYSESTLPVINYYSSKGKVRKIDAGRPIEEVFDEI 168 (169)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~v~~~i 168 (169)
.. .. +...+. ...+ ++||++.+++++.++|
T Consensus 156 ~~---~~-~~~~~~-~~ad-~vId~~~~~~~~~~~i 185 (204)
T 2if2_A 156 KK---QM-PIEEKV-KYAD-YVIDNSGSIEETYKQV 185 (204)
T ss_dssp TT---SC-CHHHHG-GGCS-EECCCSSCHHHHHHHH
T ss_pred Hh---CC-ChhHHH-hcCC-EEEECCCCHHHHHHHH
Confidence 22 21 222222 2234 5788889999999876
No 58
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=99.65 E-value=1.7e-14 Score=96.15 Aligned_cols=152 Identities=20% Similarity=0.223 Sum_probs=86.2
Q ss_pred CCCCChhHHHHHHHHHhCCceechhHHHHHHHh----cCCcc--hHHHHHHHH-----------------cCCCCCH---
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHLSAGDLLEAEAE----SGSND--GKMIREYKK-----------------EGKLVPS--- 54 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i~~d~~~~~~~~----~~~~~--~~~~~~~~~-----------------~~~~~~~--- 54 (169)
++||||||+++.|++.+|+++++.|++++.... .+... ...+..... .+...+.
T Consensus 10 ~~GsGKst~~~~la~~lg~~~~d~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~ 89 (208)
T 3ake_A 10 PSASGKSSVARRVAAALGVPYLSSGLLYRAAAFLALRAGVDPGDEEGLLALLEGLGVRLLAQAEGNRVLADGEDLTSFLH 89 (208)
T ss_dssp STTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHHTTCEEECCTTCCEEEETTEECGGGSS
T ss_pred CCCCCHHHHHHHHHHhcCCceeccchHHHhhhhhhHhcCCCCCCHHHHHHHHHhCceeeeecCCCceEEECCeeCchhhC
Confidence 689999999999999999999999999877532 12211 111221111 1111110
Q ss_pred --------------HHHHHHHHHHHHcCCCceEEEeCCCCChHHHHHHHhhcCCCCCEEEEEEcCHHHHHHHHhcCCCCC
Q 040894 55 --------------EIIVKLLQKAMQESQNKNFVIDGFPRNEENLSAAENILKIEPNAVLVFDCSEEEMTRRILSRNQGR 120 (169)
Q Consensus 55 --------------~~~~~~l~~~~~~~~~~~~i~d~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~~ 120 (169)
....+.+...+.... .++|++|.... . . ....++++|||++|++++.+|+..| ..
T Consensus 90 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~vi~g~~~~--~-----~-~~~~~d~~i~l~a~~e~~~~R~~~r--~~ 158 (208)
T 3ake_A 90 TPEVDRVVSAVARLPGVRAWVNRRLKEVP-PPFVAEGRDMG--T-----A-VFPEAAHKFYLTASPEVRAWRRARE--RP 158 (208)
T ss_dssp SHHHHHHHHHHHTCHHHHHHHHHHHHHSC-SCEEEEESSCC--C-----C-CCTTCSEEEEEECCHHHHHHHHHHT--SS
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHhc-CCEEEEcccee--E-----E-EecCCcEEEEEECCHHHHHHHHHhh--cc
Confidence 011122222222233 57888885322 0 1 2235789999999999999999887 22
Q ss_pred CCCcHHHHHHHHHHHhhchhhHHHHhhhcCcEEEEeCCC-ChHHHHHhh
Q 040894 121 VDDKIDTIKKRLNVYSESTLPVINYYSSKGKVRKIDAGR-PIEEVFDEI 168 (169)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~-~~~~v~~~i 168 (169)
...+...+.+..-...... .+...+..++||++. ++++++++|
T Consensus 159 --~~~~~~~~~~~~R~~~~~~---~~~~~ad~~~Id~~~~~~ee~~~~I 202 (208)
T 3ake_A 159 --QAYEEVLRDLLRRDERDKA---QSAPAPDALVLDTGGMTLDEVVAWV 202 (208)
T ss_dssp --SCHHHHHHHHHHHHHTC-----CCCCCTTCEEEETTTSCHHHHHHHH
T ss_pred --cCHHHHHHHHHHHHHHHhh---cccCCCCEEEEECCCCCHHHHHHHH
Confidence 2233344333321111100 002223446788875 999999886
No 59
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=99.64 E-value=1e-14 Score=98.56 Aligned_cols=153 Identities=19% Similarity=0.291 Sum_probs=84.1
Q ss_pred CCCCChhHHHHHHHHHhCCceechhHHHHHHHh----cCCcch--HHHHHHHH-----------------cCCCCCHHHH
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHLSAGDLLEAEAE----SGSNDG--KMIREYKK-----------------EGKLVPSEII 57 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i~~d~~~~~~~~----~~~~~~--~~~~~~~~-----------------~~~~~~~~~~ 57 (169)
||||||||+++.|++.+|+++++.|++++.... .+..+. ........ .+..+...+.
T Consensus 13 ~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~~~ 92 (227)
T 1cke_A 13 PSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRFVSTNGNLEVILEGEDVSGEIR 92 (227)
T ss_dssp CTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEEEEETTEEEEEETTEECHHHHT
T ss_pred CCCCCHHHHHHHHHHHhCCCcccCcceeehhhHHHHHcCCCccCHHHHHHHHHhCceeeeccCCCceEEECCeeCchhhC
Confidence 799999999999999999999999999986532 333221 11222211 0110001110
Q ss_pred -------------HHHHHHHHH----c-CCCceEEEeCCCCChHHHHHHHhhcCCCCCEEEEEEcCHHHHHHHHh----c
Q 040894 58 -------------VKLLQKAMQ----E-SQNKNFVIDGFPRNEENLSAAENILKIEPNAVLVFDCSEEEMTRRIL----S 115 (169)
Q Consensus 58 -------------~~~l~~~~~----~-~~~~~~i~d~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~----~ 115 (169)
.+.+...+. . ..+.++|+||.... . . ....++++|||++|++++.+|+. .
T Consensus 93 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~vldg~~~~--~-----~-~~~~~d~~i~l~~~~e~~~~R~~~~l~~ 164 (227)
T 1cke_A 93 TQEVANAASQVAAFPRVREALLRRQRAFRELPGLIADGRDMG--T-----V-VFPDAPVKIFLDASSEERAHRRMLQLQV 164 (227)
T ss_dssp SHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCEEEEESSCC--C-----C-CCTTCSEEEEEECCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCCEEEECCCcc--c-----e-EecCCCEEEEEeCCHHHHHHHHHHHHHh
Confidence 012222221 1 12568899986321 1 1 23458999999999999999953 3
Q ss_pred CCCCCCCCcHHHHHHHHH-----HHhhchhhHHHHhhhcCcEEEEeCC-CChHHHHHhh
Q 040894 116 RNQGRVDDKIDTIKKRLN-----VYSESTLPVINYYSSKGKVRKIDAG-RPIEEVFDEI 168 (169)
Q Consensus 116 R~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~id~~-~~~~~v~~~i 168 (169)
| ++.. ..+...+.+. .|.....+. ...+..++||++ .++++++++|
T Consensus 165 r--g~~~-~~~~~~~~i~~R~~~~~~~~~~pl----~~~~~~~~Id~~~~~~~ev~~~I 216 (227)
T 1cke_A 165 K--GFSV-NFERLLAEIKERDDRDRNRAVAPL----VPAADALVLDSTTLSIEQVIEKA 216 (227)
T ss_dssp H--TCCC-CHHHHHHHHC-------------C----CCCTTCEEEETTTSCHHHHHHHH
T ss_pred C--CccC-CHHHHHHHHHHHHHhhhhhcccCc----cCCCCEEEEeCCCCCHHHHHHHH
Confidence 4 4422 2222222221 121111111 112234678887 8999999886
No 60
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=99.63 E-value=2.8e-15 Score=103.40 Aligned_cols=147 Identities=20% Similarity=0.192 Sum_probs=87.9
Q ss_pred CCCCChhHHHHHHHHH---hCCcee--chhHHHHHHHhcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCCceEEE
Q 040894 1 GPGSGKSTQCSKIAKH---LGFRHL--SAGDLLEAEAESGSNDGKMIREYKKEGKLVPSEIIVKLLQKAMQESQNKNFVI 75 (169)
Q Consensus 1 ~~GsGKsTla~~La~~---~~~~~i--~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~ 75 (169)
+|||||||+++.|++. .|+.++ +.|.+.... ..-...+. ..........+...+. ...+|+
T Consensus 12 ~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~~~~l-~~~~~~~e----------~~~~~~~~~~i~~~l~---~~~vIi 77 (260)
T 3a4m_A 12 LPGVGKSTFSKNLAKILSKNNIDVIVLGSDLIRESF-PVWKEKYE----------EFIKKSTYRLIDSALK---NYWVIV 77 (260)
T ss_dssp CTTSSHHHHHHHHHHHHHHTTCCEEEECTHHHHTTS-SSCCGGGH----------HHHHHHHHHHHHHHHT---TSEEEE
T ss_pred CCCCCHHHHHHHHHHHHHhCCCEEEEECchHHHHHH-hhhhHHHH----------HHHHHHHHHHHHHHhh---CCEEEE
Confidence 6999999999999998 688777 776554322 11000000 0011112334444443 367899
Q ss_pred eCCCCChHHHHHHHhh--cCCCCCEEEEEEcCHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHhhchhhHHHHhhhcCcEE
Q 040894 76 DGFPRNEENLSAAENI--LKIEPNAVLVFDCSEEEMTRRILSRNQGRVDDKIDTIKKRLNVYSESTLPVINYYSSKGKVR 153 (169)
Q Consensus 76 d~~~~~~~~~~~~~~~--~~~~~~~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (169)
|+.+........+... ....++.+|||++|++++.+|+..| +++. ..+.+......|..... .+.-....+
T Consensus 78 D~~~~~~~~~~~l~~~a~~~~~~~~vi~l~~~~e~~~~R~~~R--~~~~-~~~~l~~~~~~~e~~~~----~~~~~~~~~ 150 (260)
T 3a4m_A 78 DDTNYYNSMRRDLINIAKKYNKNYAIIYLKASLDVLIRRNIER--GEKI-PNEVIKKMYEKFDEPGK----KYKWDEPFL 150 (260)
T ss_dssp CSCCCSHHHHHHHHHHHHHTTCEEEEEEEECCHHHHHHHHHHT--TCSS-CHHHHHHHHHHCCCTTS----SCGGGCCSE
T ss_pred eCCcccHHHHHHHHHHHHHcCCCEEEEEEeCCHHHHHHHHHhC--CCCC-CHHHHHHHHHHhcCccc----cCCCCCCEE
Confidence 9866555444444331 3456789999999999999999988 4432 33445544444442211 121122457
Q ss_pred EEeCCC--ChHHHHHhh
Q 040894 154 KIDAGR--PIEEVFDEI 168 (169)
Q Consensus 154 ~id~~~--~~~~v~~~i 168 (169)
+||++. +++++++.|
T Consensus 151 ~Id~~~~~~~~ei~~~I 167 (260)
T 3a4m_A 151 IIDTTKDIDFNEIAKKL 167 (260)
T ss_dssp EEETTSCCCHHHHHHHH
T ss_pred EEeCCCCCCHHHHHHHH
Confidence 788876 899998876
No 61
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=99.63 E-value=4.7e-16 Score=109.40 Aligned_cols=160 Identities=20% Similarity=0.159 Sum_probs=91.4
Q ss_pred CCCCChhHHHHHHHHHh-CCceechhHHHHHHHhcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHc-CCCceEEEeCC
Q 040894 1 GPGSGKSTQCSKIAKHL-GFRHLSAGDLLEAEAESGSNDGKMIREYKKEGKLVPSEIIVKLLQKAMQE-SQNKNFVIDGF 78 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~-~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~i~d~~ 78 (169)
+|||||||+++.|++++ ++.+++.|.+. ........ +.. ..+...............+...+.. ..+..+|+|++
T Consensus 10 ~~GsGKST~a~~L~~~~~~~~~i~~D~~r-~~~~~~~~-g~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~vi~d~~ 86 (301)
T 1ltq_A 10 CPGSGKSTWAREFIAKNPGFYNINRDDYR-QSIMAHEE-RDE-YKYTKKKEGIVTGMQFDTAKSILYGGDSVKGVIISDT 86 (301)
T ss_dssp CTTSSHHHHHHHHHHHSTTEEEECHHHHH-HHHTTSCC-CC----CCHHHHHHHHHHHHHHHHHHTTSCTTCCEEEECSC
T ss_pred CCCCCHHHHHHHHHHhCCCcEEecccHHH-HHhccCCc-ccc-cccchhhhhHHHHHHHHHHHHHHhhccCCCEEEEeCC
Confidence 69999999999999985 89999998544 43322111 000 0000000000111223344444421 23778999998
Q ss_pred CCChHHHHHHHhh--cCCCCCEEEEEEcCHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHhhchhhH-HHHhhhcCcEEEE
Q 040894 79 PRNEENLSAAENI--LKIEPNAVLVFDCSEEEMTRRILSRNQGRVDDKIDTIKKRLNVYSESTLPV-INYYSSKGKVRKI 155 (169)
Q Consensus 79 ~~~~~~~~~~~~~--~~~~~~~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i 155 (169)
+........+... ....++.+|||++|++++.+|+..| +......+.+.+++..|....... +..-......+++
T Consensus 87 ~~~~~~~~~l~~~~~~~~~~~~~i~l~~~~e~~~~R~~~R--~~~~~~~e~i~~~~~~~~~~~~~~~~~~~~~~~~~i~i 164 (301)
T 1ltq_A 87 NLNPERRLAWETFAKEYGWKVEHKVFDVPWTELVKRNSKR--GTKAVPIDVLRSMYKSMREYLGLPVYNGTPGKPKAVIF 164 (301)
T ss_dssp CCCHHHHHHHHHHHHHTTCEEEEEECCCCHHHHHHHHHHC--GGGCCCHHHHHHHHHHHHHHHTCCCCCCCTTSCEEEEE
T ss_pred CCCHHHHHHHHHHHHHcCCcEEEEEEECCHHHHHHHHHhc--cCCCCCHHHHHHHHHHHhcccCCcceeccccccceEEE
Confidence 8776555444421 2234568999999999999999988 322344566777777666543211 0000111245677
Q ss_pred eCCCChHHHH
Q 040894 156 DAGRPIEEVF 165 (169)
Q Consensus 156 d~~~~~~~v~ 165 (169)
|.+++++++.
T Consensus 165 D~dgtl~~~~ 174 (301)
T 1ltq_A 165 DVDGTLAKMN 174 (301)
T ss_dssp ETBTTTBCCS
T ss_pred eCCCCccccc
Confidence 8877765543
No 62
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=99.63 E-value=1.4e-14 Score=100.88 Aligned_cols=150 Identities=18% Similarity=0.175 Sum_probs=87.7
Q ss_pred CCCCChhHHHHHHHHHhCCceechhHHHHHHHhcCCcchHHHHHHHHcC-----CCCCHHHH------------------
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHLSAGDLLEAEAESGSNDGKMIREYKKEG-----KLVPSEII------------------ 57 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~------------------ 57 (169)
+|||||||+|+.|+ .+|+.+++.|++.+..+.++......+...+... ........
T Consensus 83 ~~GSGKSTva~~La-~lg~~~id~D~~~~~~~~~~~~~~~~i~~~~g~~i~~~~g~idr~~l~~~vf~~~~~~~~l~~i~ 161 (281)
T 2f6r_A 83 ISGSGKSSVAQRLK-NLGAYIIDSDHLGHRAYAPGGPAYQPVVEAFGTDILHKDGTINRKVLGSRVFGNKKQMKILTDIV 161 (281)
T ss_dssp CTTSCHHHHHHHHH-HHTCEEEEHHHHHHHHTSTTSTTHHHHHHHHCGGGBCTTSSBCHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHH-HCCCcEEehhHHHHHHhcCChHHHHHHHHHcCccccCCCCCcCHHHHHHHHhCCHHHHHHhhccc
Confidence 69999999999999 5899999999999887666544333333322110 01111100
Q ss_pred ----HHHHHHHHH---cCCCceEEEeCCCCChHHHHHHHhhcCCCCCEEEEEEcCHHHHHHHHhcCCCCCCCCcHHHHHH
Q 040894 58 ----VKLLQKAMQ---ESQNKNFVIDGFPRNEENLSAAENILKIEPNAVLVFDCSEEEMTRRILSRNQGRVDDKIDTIKK 130 (169)
Q Consensus 58 ----~~~l~~~~~---~~~~~~~i~d~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~ 130 (169)
...+...+. ......+|+||...... .+. ..+|.+|||++|++++.+|+..|. ++ ..+...+
T Consensus 162 ~P~i~~~~~~~~~~~~~~~~~~vIveg~~l~~~---~~~----~~~d~vI~l~a~~ev~~~Rl~~R~-g~---s~e~~~~ 230 (281)
T 2f6r_A 162 WPVIAKLAREEMDVAVAKGKTLCVIDAAMLLEA---GWQ----SMVHEVWTVVIPETEAVRRIVERD-GL---SEAAAQS 230 (281)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCEEEEECTTTTTT---TGG----GGCSEEEEEECCHHHHHHHHHHHH-CC---CHHHHHH
T ss_pred ChHHHHHHHHHHHHHhccCCCEEEEEechhhcc---chH----HhCCEEEEEcCCHHHHHHHHHHcC-CC---CHHHHHH
Confidence 001111111 11235788898522111 121 247899999999999999998872 22 2334443
Q ss_pred HHHHHhhchhhHHHHhhhcCcEEEEeCCCChHHHHHhh
Q 040894 131 RLNVYSESTLPVINYYSSKGKVRKIDAGRPIEEVFDEI 168 (169)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~v~~~i 168 (169)
++... .+....+. ..+ ++|+++.+++++.++|
T Consensus 231 ri~~q----~~~~~~~~-~AD-~vIdn~~s~eel~~~I 262 (281)
T 2f6r_A 231 RLQSQ----MSGQQLVE-QSN-VVLSTLWESHVTQSQV 262 (281)
T ss_dssp HHHTS----CCHHHHHH-TCS-EEEECSSCHHHHHHHH
T ss_pred HHHHc----CChHhhHh-hCC-EEEECCCCHHHHHHHH
Confidence 44332 11222222 234 5678888999998876
No 63
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=99.62 E-value=6.1e-15 Score=98.02 Aligned_cols=70 Identities=17% Similarity=0.164 Sum_probs=45.2
Q ss_pred CCCCEEEEEEcCHHHHHHHHhcCCCCCCCCcH--HHHHHHHHHHhhchhhHHHHhhhcCcEEEEeCCCChHHHHHhh
Q 040894 94 IEPNAVLVFDCSEEEMTRRILSRNQGRVDDKI--DTIKKRLNVYSESTLPVINYYSSKGKVRKIDAGRPIEEVFDEI 168 (169)
Q Consensus 94 ~~~~~~i~l~~~~~~~~~R~~~R~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~v~~~i 168 (169)
..++.+|||++|++++.+|+..| +++.+.. ....+++..+. ....+.|......++||++.++++++++|
T Consensus 123 ~~~d~vi~L~~~~e~~~~Rl~~R--~r~~~~~~~~~~~~~l~~~~---~~~~~~~~~~~~~~~Id~~~~~~~v~~~I 194 (205)
T 2jaq_A 123 LSFDIVIYLRVSTKTAISRIKKR--GRSEELLIGEEYWETLNKNY---EEFYKQNVYDFPFFVVDAELDVKTQIELI 194 (205)
T ss_dssp CCCSEEEEEECCHHHHHHHHHHH--TCHHHHHSCHHHHHHHHHHH---HHHHHHHTTTSCEEEEETTSCHHHHHHHH
T ss_pred CCCCEEEEEeCCHHHHHHHHHHc--CChhhhcCcHHHHHHHHHHH---HHHHHHccccCcEEEEECCCCHHHHHHHH
Confidence 57899999999999999999887 5532211 01222222221 12223343234578899999999999876
No 64
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=99.62 E-value=5.4e-16 Score=100.66 Aligned_cols=146 Identities=17% Similarity=0.256 Sum_probs=74.8
Q ss_pred CCCCChhHHHHHHHHHhCCceechhHHHHHHHhcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCCceEEEe---C
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHLSAGDLLEAEAESGSNDGKMIREYKKEGKLVPSEIIVKLLQKAMQESQNKNFVID---G 77 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~d---~ 77 (169)
||||||||+++.|+..++..+++.|.+++... +......... .+...+.......+..... ...+++. +
T Consensus 12 ~~GsGKSTl~~~La~~l~~~~id~d~~~~~~~--~~~i~~i~~~---~g~~~~~~~~~~~l~~l~~---~~~~v~~~~~~ 83 (173)
T 1kag_A 12 PMGAGKSTIGRQLAQQLNMEFYDSDQEIEKRT--GADVGWVFDL---EGEEGFRDREEKVINELTE---KQGIVLATGGG 83 (173)
T ss_dssp CTTSCHHHHHHHHHHHTTCEEEEHHHHHHHHH--TSCHHHHHHH---HHHHHHHHHHHHHHHHHHT---SSSEEEECCTT
T ss_pred CCCCCHHHHHHHHHHHhCCCEEeccHHHHHHh--CcCHHHHHHH---HhHHHHHHHHHHHHHHHHh---CCCeEEECCCe
Confidence 79999999999999999999999998877643 2222211110 0111111111233333322 2344443 2
Q ss_pred CCCChHHHHHHHhhcCCCCCEEEEEEcCHHHHHHHHhcCCCCCC----CCc-HHHHHHHHHHHhhchhhHHHHhhhcCcE
Q 040894 78 FPRNEENLSAAENILKIEPNAVLVFDCSEEEMTRRILSRNQGRV----DDK-IDTIKKRLNVYSESTLPVINYYSSKGKV 152 (169)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~~~----~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (169)
.+........+.. .++++||++|++++.+|+..|. .++ .+. .+.+...+ ....+. |...+.
T Consensus 84 ~~~~~~~~~~l~~-----~~~~i~l~~~~~~l~~R~~~r~-~r~~~~~~~~~~~~~~~~~----~~r~~~---~~~~a~- 149 (173)
T 1kag_A 84 SVKSRETRNRLSA-----RGVVVYLETTIEKQLARTQRDK-KRPLLHVETPPREVLEALA----NERNPL---YEEIAD- 149 (173)
T ss_dssp GGGSHHHHHHHHH-----HSEEEECCCCHHHHHSCC-------CCSSSSCCCHHHHHHHH----HHHHHH---HHHHCS-
T ss_pred EEecHHHHHHHHh-----CCEEEEEeCCHHHHHHHHhCCC-CCCCCCCCCchHHHHHHHH----HHHHHH---HHhhCC-
Confidence 2222222233333 5689999999999999998761 122 122 33333221 111122 222233
Q ss_pred EEEeCC-CChHHHHHhh
Q 040894 153 RKIDAG-RPIEEVFDEI 168 (169)
Q Consensus 153 ~~id~~-~~~~~v~~~i 168 (169)
++||++ .++++++++|
T Consensus 150 ~~id~~~~~~~~~~~~i 166 (173)
T 1kag_A 150 VTIRTDDQSAKVVANQI 166 (173)
T ss_dssp EEC-----CHHHHHHHH
T ss_pred EEEECCCCCHHHHHHHH
Confidence 566665 8999999876
No 65
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=99.61 E-value=2.2e-14 Score=94.04 Aligned_cols=143 Identities=17% Similarity=0.235 Sum_probs=80.2
Q ss_pred CCCCChhHHHHHHHHH-hCCceechhHHHHHHHhcCCcchHHHHHHHHcCCCC---CHHHHHHHHHHHHHcCCCceEEEe
Q 040894 1 GPGSGKSTQCSKIAKH-LGFRHLSAGDLLEAEAESGSNDGKMIREYKKEGKLV---PSEIIVKLLQKAMQESQNKNFVID 76 (169)
Q Consensus 1 ~~GsGKsTla~~La~~-~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~i~d 76 (169)
+|||||||+++.|++. +|+++++.|++++.. ......+.. +.. ... ........+...+.. +.++|++
T Consensus 18 ~~GsGKSTv~~~La~~l~g~~~id~d~~~~~~-~~~~~~~~~----~~~-~~~~r~~~~~~~~~l~~~~~~--~g~~vi~ 89 (184)
T 1y63_A 18 TPGTGKTSMAEMIAAELDGFQHLEVGKLVKEN-HFYTEYDTE----LDT-HIIEEKDEDRLLDFMEPIMVS--RGNHVVD 89 (184)
T ss_dssp STTSSHHHHHHHHHHHSTTEEEEEHHHHHHHT-TCSCC----------C-CCCCHHHHHHHHHHHHHHHTS--SSEEEEE
T ss_pred CCCCCHHHHHHHHHHhcCCCEEeeHHHHHHHh-hhhhhHHHH----hhh-cccCCCCHHHHHHHHHHHHhc--cCCEEEe
Confidence 6999999999999999 799999999998874 111111111 111 111 122334445555533 3467777
Q ss_pred CCCCChHHHHHHHhhcCCCCCEEEEEEcCHHHHHHHHhcCCCCCCCCcHHHHHHHH-HH-HhhchhhHHHHhhhcCcEEE
Q 040894 77 GFPRNEENLSAAENILKIEPNAVLVFDCSEEEMTRRILSRNQGRVDDKIDTIKKRL-NV-YSESTLPVINYYSSKGKVRK 154 (169)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~ 154 (169)
...... +.. ..++.+|||++|++++.+|+..| +.. ...+.... .+ +..........|. ..+ +
T Consensus 90 ~~~~~~-----~~~---~~~~~vi~l~~~~e~~~~Rl~~R--~~~---~~~~~~~~~~q~~~~l~~~~~~~y~--~~~-v 153 (184)
T 1y63_A 90 YHSSEL-----FPE---RWFHMVVVLHTSTEVLFERLTKR--QYS---EAKRAENMEAEIQCICEEEARDAYE--DDI-V 153 (184)
T ss_dssp CSCCTT-----SCG---GGCSEEEEEECCHHHHHHHHHHT--TCC---HHHHHHHHHHHHTTHHHHHHHHHSC--GGG-E
T ss_pred CchHhh-----hhh---ccCCEEEEEECCHHHHHHHHHhC--CCC---hhhhHhhHHHHHHHHHHHHHHHHhc--cCc-E
Confidence 642211 100 12679999999999999999988 322 11222221 12 2222223333343 132 4
Q ss_pred Ee-CCCChHHHHHh
Q 040894 155 ID-AGRPIEEVFDE 167 (169)
Q Consensus 155 id-~~~~~~~v~~~ 167 (169)
|+ ++.+++++.++
T Consensus 154 i~~n~~~~~~~~~~ 167 (184)
T 1y63_A 154 LVRENDTLEQMAAT 167 (184)
T ss_dssp EEEECSSHHHHHHH
T ss_pred EECCCCCHHHHHHH
Confidence 44 67899998443
No 66
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=99.60 E-value=2.7e-14 Score=93.38 Aligned_cols=143 Identities=13% Similarity=0.129 Sum_probs=73.5
Q ss_pred CCCCChhHHHHHHHHHhCCcee-chhHHHHHHHhcCCcchHHHHHHHHcCCC------CCHHHHHHHHHHHHHcCCCceE
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHL-SAGDLLEAEAESGSNDGKMIREYKKEGKL------VPSEIIVKLLQKAMQESQNKNF 73 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~ 73 (169)
+|||||||+++.|++.++++++ +.+.+ +..+++++..+.. .......+.+...+... +..+
T Consensus 13 ~~GsGKST~a~~La~~l~~~~i~d~~~~-----------g~~i~~~~~~g~~~~~~~~~~~~~~~~~i~~~l~~~-g~~v 80 (183)
T 2vli_A 13 PFGVGKTHTAHTLHERLPGSFVFEPEEM-----------GQALRKLTPGFSGDPQEHPMWIPLMLDALQYASREA-AGPL 80 (183)
T ss_dssp CC----CHHHHHHHHHSTTCEECCTHHH-----------HHHHHHTSTTCCSCGGGSTTHHHHHHHHHHHHHHHC-SSCE
T ss_pred CCCCCHHHHHHHHHHhcCCCEEEchhhh-----------HHHHHHhCccccchhhhhHHHHHHHHHHHHHHHHhC-CCcE
Confidence 6999999999999999999887 43211 1112221111110 01122344555555432 5567
Q ss_pred EEeCCCCChHHHHHHHhh--cCCCCCEEEEEEcCHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHhhchhhHHHHhhhcCc
Q 040894 74 VIDGFPRNEENLSAAENI--LKIEPNAVLVFDCSEEEMTRRILSRNQGRVDDKIDTIKKRLNVYSESTLPVINYYSSKGK 151 (169)
Q Consensus 74 i~d~~~~~~~~~~~~~~~--~~~~~~~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (169)
|+|+..........+... ....+...|||++|++++.+|+..|. .++ ...+.+...+..+. +. . + .
T Consensus 81 i~d~~~~~~~~~~~~~~~l~~~~~~~~~i~l~~~~e~~~~R~~~R~-~r~-~~~~~~~~~~~~~~----~~-~-~----~ 148 (183)
T 2vli_A 81 IVPVSISDTARHRRLMSGLKDRGLSVHHFTLIAPLNVVLERLRRDG-QPQ-VNVGTVEDRLNELR----GE-Q-F----Q 148 (183)
T ss_dssp EEEECCCCHHHHHHHHHHHHHTTCCCEEEEEECCHHHHHHHHHTC------CCHHHHHHHHHHHT----SG-G-G----C
T ss_pred EEeeeccCHHHHHHHHHHHHhcCCceEEEEEeCCHHHHHHHHHhcc-ccc-hhHHHHHHHHHhhc----cc-c-c----c
Confidence 778654433222221110 12223356999999999999999872 122 22333332222222 21 1 1 2
Q ss_pred EEEEeCC-CChHHHHHhh
Q 040894 152 VRKIDAG-RPIEEVFDEI 168 (169)
Q Consensus 152 ~~~id~~-~~~~~v~~~i 168 (169)
. +||++ .++++++++|
T Consensus 149 ~-~Id~~~~~~~~~~~~I 165 (183)
T 2vli_A 149 T-HIDTAGLGTQQVAEQI 165 (183)
T ss_dssp S-EEECTTCCHHHHHHHH
T ss_pred e-EeeCCCCCHHHHHHHH
Confidence 3 77876 8999999876
No 67
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=99.59 E-value=4.1e-15 Score=97.14 Aligned_cols=144 Identities=17% Similarity=0.233 Sum_probs=80.4
Q ss_pred CCCCChhHHHHHHHHHhCCceechhHHHHHHHhcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCCceEEEeCCCC
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHLSAGDLLEAEAESGSNDGKMIREYKKEGKLVPSEIIVKLLQKAMQESQNKNFVIDGFPR 80 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~d~~~~ 80 (169)
+|||||||+++.|++.+++.+++.|++++.. ......+... ...........+.+...+.. + ++|++....
T Consensus 19 ~~GsGKst~~~~l~~~~~~~~~~~d~~~~~~-~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~--g-~~vv~~~~~ 89 (180)
T 3iij_A 19 TPGVGKTTLGKELASKSGLKYINVGDLAREE-QLYDGYDEEY-----DCPILDEDRVVDELDNQMRE--G-GVIVDYHGC 89 (180)
T ss_dssp STTSSHHHHHHHHHHHHCCEEEEHHHHHHHH-TCEEEEETTT-----TEEEECHHHHHHHHHHHHHH--C-CEEEECSCC
T ss_pred CCCCCHHHHHHHHHHHhCCeEEEHHHHHhhc-chhhhhhhhh-----cCccCChHHHHHHHHHHHhc--C-CEEEEechh
Confidence 6999999999999999999999999988775 1100000000 00012233344555555554 3 456665322
Q ss_pred ChHHHHHHHhhcCCCCCEEEEEEcCHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHhhchhhHHHHhhhcCcEEEEeCCCC
Q 040894 81 NEENLSAAENILKIEPNAVLVFDCSEEEMTRRILSRNQGRVDDKIDTIKKRLNVYSESTLPVINYYSSKGKVRKIDAGRP 160 (169)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~ 160 (169)
..- ....++.+|||++|++++.+|+..| ++....... ......+..........|. ...++.+++.+
T Consensus 90 ~~~--------~~~~~~~vi~L~~~~e~l~~R~~~r--~~~~~~~~~-~~~~~~~~~~~~~~~~~y~--~~~~i~~~~~~ 156 (180)
T 3iij_A 90 DFF--------PERWFHIVFVLRTDTNVLYERLETR--GYNEKKLTD-NIQCEIFQVLYEEATASYK--EEIVHQLPSNK 156 (180)
T ss_dssp TTS--------CGGGCSEEEEEECCHHHHHHHHHHT--TCCHHHHHH-HHHHHHTTHHHHHHHHHSC--GGGEEEEECSS
T ss_pred hhc--------chhcCCEEEEEECCHHHHHHHHHHc--CCCHHHHHH-HHHHHHHHHHHHHHHHHcC--CCeEEEcCCCC
Confidence 110 0012789999999999999999988 432111110 0011122222222223333 24455566799
Q ss_pred hHHHHH
Q 040894 161 IEEVFD 166 (169)
Q Consensus 161 ~~~v~~ 166 (169)
++++.+
T Consensus 157 ~~ev~~ 162 (180)
T 3iij_A 157 PEELEN 162 (180)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999843
No 68
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=99.58 E-value=1.8e-13 Score=90.89 Aligned_cols=151 Identities=19% Similarity=0.163 Sum_probs=81.4
Q ss_pred CCCCChhHHHHHHHHHhCCceechhHHHHHHHhcCCcchHHHHHHHHcCCCCC--H------------------HHHHHH
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHLSAGDLLEAEAESGSNDGKMIREYKKEGKLVP--S------------------EIIVKL 60 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~------------------~~~~~~ 60 (169)
|+||||||+++.||+++|++++| +++++...... +.........++..+ . ....+.
T Consensus 14 ~~GsGk~ti~~~la~~lg~~~~D-~~~~~~~a~~~---g~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (201)
T 3fdi_A 14 EFGSGGHLVAKKLAEHYNIPLYS-KELLDEVAKDG---RYSKEVLERFDEKPMNFAFIPVPAGGTTISLEQDIAIRQFNF 89 (201)
T ss_dssp CTTSSHHHHHHHHHHHTTCCEEC-HHHHHHTTCC------------------------------------CHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHhCcCEEC-HHHHHHHHHhc---CCCHHHHHHHhhhchhHHHHHhccccccccccHHHHHHHHHH
Confidence 68999999999999999999999 77876542211 111000000111100 0 122333
Q ss_pred HHHHHH-cCCCceEEEeCCCCChHHHHHHHhhcCCCCCEEEEEEcCHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHhhch
Q 040894 61 LQKAMQ-ESQNKNFVIDGFPRNEENLSAAENILKIEPNAVLVFDCSEEEMTRRILSRNQGRVDDKIDTIKKRLNVYSEST 139 (169)
Q Consensus 61 l~~~~~-~~~~~~~i~d~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~~~ 139 (169)
+..+.. . ..++|++|- .... +. ......+.|||++|++++.+|+..+. +.+ .+...+.+.......
T Consensus 90 i~~la~~~--~~~~Vi~Gr--~g~~---vl--~~~~~~~~V~L~A~~e~r~~R~~~~~-~~~---~~~~~~~i~~~d~~R 156 (201)
T 3fdi_A 90 IRKKANEE--KESFVIVGR--CAEE---IL--SDNPNMISAFILGDKDTKTKRVMERE-GVD---EKTALNMMKKMDKMR 156 (201)
T ss_dssp HHHHHHTS--CCCEEEEST--THHH---HT--TTCTTEEEEEEEECHHHHHHHHHHHH-TCC---HHHHHHHHHHHHHHH
T ss_pred HHHHHhhc--CCCEEEEEC--Ccch---hc--CCCCCeEEEEEECCHHHHHHHHHHHh-CCC---HHHHHHHHHHHHHHH
Confidence 333331 2 456787763 1111 11 11123589999999999999998651 222 223333333333333
Q ss_pred hhHHHHh-------hhcCcEEEEeCCCChHHHHHhh
Q 040894 140 LPVINYY-------SSKGKVRKIDAGRPIEEVFDEI 168 (169)
Q Consensus 140 ~~~~~~~-------~~~~~~~~id~~~~~~~v~~~i 168 (169)
.+.+..+ ...+.+++.++..+++++++.|
T Consensus 157 ~~~y~~~~~~~~~~~~~~dl~Idt~~l~~eevv~~I 192 (201)
T 3fdi_A 157 KVYHNFYCESKWGDSRTYDICIKIGKVDVDTATDMI 192 (201)
T ss_dssp HHHHHHHCSSCTTBGGGCSEEEEESSSCHHHHHHHH
T ss_pred HHHHHHHhCCCCCCcccCCEEEECCCCCHHHHHHHH
Confidence 3333332 1234666666678999999876
No 69
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=99.56 E-value=1.2e-13 Score=90.89 Aligned_cols=135 Identities=14% Similarity=0.139 Sum_probs=78.8
Q ss_pred CCCCChhHHHHHHHHHhCCceechhHHHHHHHhcCCcchHHHHHHHHcC----CCCCHHHH-------------------
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHLSAGDLLEAEAESGSNDGKMIREYKKEG----KLVPSEII------------------- 57 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~------------------- 57 (169)
++||||||+++.|++.+|++++++|+++++...+ .-..+...+... ........
T Consensus 20 ~~GSGKSTva~~L~~~lg~~vid~D~~~~~~~~~---~~~~i~~~fG~~~~~~g~ldr~~L~~~vF~~~~~~~~l~~i~h 96 (192)
T 2grj_A 20 KIGTGKSTVCEILKNKYGAHVVNVDRIGHEVLEE---VKEKLVELFGGSVLEDGKVNRKKLAGIVFESRENLKKLELLVH 96 (192)
T ss_dssp STTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHH---THHHHHHHHCGGGBSSSSBCHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhcCCEEEECcHHHHHHHHH---HHHHHHHHhChhhcCCCCcCHHHHHHHHhCCHHHHHHHHhhhC
Confidence 6899999999999999999999999999887654 111222222110 01111100
Q ss_pred ---HHHHHHHHHcCCCceEEEeCCCCChHHHHHHHhhcCCCCCEEEEEEcCHHHHHHHHhcCCCCCCCCcHHHHHHHHHH
Q 040894 58 ---VKLLQKAMQESQNKNFVIDGFPRNEENLSAAENILKIEPNAVLVFDCSEEEMTRRILSRNQGRVDDKIDTIKKRLNV 134 (169)
Q Consensus 58 ---~~~l~~~~~~~~~~~~i~d~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~~~ 134 (169)
...+...+... +..+|+|+ |...+. .+.. .+|.+||+++|++++.+|+..+ .+..
T Consensus 97 P~i~~~~~~~~~~~-~~~vv~d~-pll~e~--~~~~----~~d~vi~v~a~~e~r~~Rli~~--------------q~~~ 154 (192)
T 2grj_A 97 PLMKKRVQEIINKT-SGLIVIEA-ALLKRM--GLDQ----LCDHVITVVASRETILKRNREA--------------DRRL 154 (192)
T ss_dssp HHHHHHHHHHHHTC-CEEEEEEC-TTTTTT--TGGG----GCSEEEEEECCHHHHHHHCSSH--------------HHHH
T ss_pred HHHHHHHHHHHHHc-CCEEEEEE-eceeec--ChHH----hCCEEEEEECCHHHHHHHHHHh--------------cCCc
Confidence 11112222222 44566775 443332 1222 4789999999999999998221 1111
Q ss_pred HhhchhhHHHHhhhcCcEEEEeCCCChHHHHHhh
Q 040894 135 YSESTLPVINYYSSKGKVRKIDAGRPIEEVFDEI 168 (169)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~id~~~~~~~v~~~i 168 (169)
|... ....++ ++|+++.+++++.++|
T Consensus 155 ~~~~-------~~~~AD-~vI~n~~~~~~l~~~v 180 (192)
T 2grj_A 155 KFQE-------DIVPQG-IVVANNSTLEDLEKKV 180 (192)
T ss_dssp TTCT-------TCCCCS-EEEECSSCHHHHHHHH
T ss_pred hhhh-------HHhcCC-EEEECCCCHHHHHHHH
Confidence 1111 111234 5678889999998876
No 70
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=99.56 E-value=8.2e-15 Score=100.66 Aligned_cols=151 Identities=19% Similarity=0.240 Sum_probs=84.8
Q ss_pred CCCCChhHHHHHHHHHhCCc----------eechhHHHHHHHhcCCcchHHHHHHHHcCCC-------CCHHHHHHHHHH
Q 040894 1 GPGSGKSTQCSKIAKHLGFR----------HLSAGDLLEAEAESGSNDGKMIREYKKEGKL-------VPSEIIVKLLQK 63 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~----------~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~l~~ 63 (169)
||||||||+|+.|++.++++ +++.|++++.. ....+.. ...+.. .......+.+..
T Consensus 30 ~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~~~~------~~~~~~~-~~~g~~~f~~~~~~d~~~l~~~L~~ 102 (252)
T 1uj2_A 30 GTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFYRVL------TSEQKAK-ALKGQFNFDHPDAFDNELILKTLKE 102 (252)
T ss_dssp STTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGBCCC------CHHHHHH-HHTTCSCTTSGGGBCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCcccccc------Chhhhhh-hccCCCCCCCcchhhHHHHHHHHHH
Confidence 69999999999999999987 79999988631 0111111 111111 122223445555
Q ss_pred HHHc----------------------CCCceEEEeCCCCChHHHHHHHhhcCCCCCEEEEEEcCHHHHHHHHhcCC-CCC
Q 040894 64 AMQE----------------------SQNKNFVIDGFPRNEENLSAAENILKIEPNAVLVFDCSEEEMTRRILSRN-QGR 120 (169)
Q Consensus 64 ~~~~----------------------~~~~~~i~d~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~-~~~ 120 (169)
+... .+...+|+||....... .+.. .+|.+|||++|++++.+|+..|. ..+
T Consensus 103 l~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~vIveG~~~~~~~--~~~~----~~d~vi~l~~~~e~~~~R~~~R~~~~r 176 (252)
T 1uj2_A 103 ITEGKTVQIPVYDFVSHSRKEETVTVYPADVVLFEGILAFYSQ--EVRD----LFQMKLFVDTDADTRLSRRVLRDISER 176 (252)
T ss_dssp HHTTCCEEEEEEETTTTEEEEEEEEECCCSEEEEECTTTTSSH--HHHH----HCSEEEEEECCHHHHHHHHHHHHHHHS
T ss_pred HHcCCeeecCccccccccCCCceeeeCCCcEEEEeeeccccCH--HHHH----hcCeeEEEeCCHHHHHHHHHHHHHhhh
Confidence 4321 12457888995432111 1222 26899999999999999998771 011
Q ss_pred CCCcHHHHHHHHHHHhhchhhHHH----HhhhcCcEEE---EeCCCChHHHHHhh
Q 040894 121 VDDKIDTIKKRLNVYSESTLPVIN----YYSSKGKVRK---IDAGRPIEEVFDEI 168 (169)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~---id~~~~~~~v~~~i 168 (169)
. ...+.+.+++.. ...+.+. .+....++++ +|++.+++++.++|
T Consensus 177 g-~~~e~i~~~~~~---~~~~~~~~~i~~~~~~ad~vI~~~id~~~s~e~v~~~I 227 (252)
T 1uj2_A 177 G-RDLEQILSQYIT---FVKPAFEEFCLPTKKYADVIIPRGADNLVAINLIVQHI 227 (252)
T ss_dssp C-CCHHHHHHHHHH---THHHHHHHHTGGGGGGCSEEEETGGGCHHHHHHHHHHH
T ss_pred C-CCHHHHHHHHHH---hccHHHHHHhhhhhhcCcEEEecCCCChhHHHHHHHHH
Confidence 1 123334333322 1111111 1122234433 38888999998876
No 71
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=99.55 E-value=6.3e-14 Score=96.24 Aligned_cols=31 Identities=32% Similarity=0.626 Sum_probs=28.9
Q ss_pred CCCCChhHHHHHHHHHhCCceechhHHHHHH
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHLSAGDLLEAE 31 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i~~d~~~~~~ 31 (169)
|+||||||+++.|++++|+.+++.|.+++..
T Consensus 35 ~~GsGKSTl~k~La~~Lg~~~~d~g~i~r~~ 65 (252)
T 4e22_A 35 PSGAGKGTLCKALAESLNWRLLDSGAIYRVL 65 (252)
T ss_dssp CTTSSHHHHHHHHHHHTTCEEEEHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhcCCCcCCCCceehHh
Confidence 7999999999999999999999999999664
No 72
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=99.54 E-value=7.9e-15 Score=97.86 Aligned_cols=151 Identities=19% Similarity=0.188 Sum_probs=86.3
Q ss_pred CCCCChhHHHHHHHHHh-CCceechhHHHHHHHhcCCcchHHHHHHHHcC---CCCCHHHHHHHHHHHHHc---------
Q 040894 1 GPGSGKSTQCSKIAKHL-GFRHLSAGDLLEAEAESGSNDGKMIREYKKEG---KLVPSEIIVKLLQKAMQE--------- 67 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~-~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~--------- 67 (169)
||||||||+++.|++.+ ++.+++.|+++...-+- ... ...+... .........+.+...+..
T Consensus 29 ~~GsGKSTl~~~L~~~~~~~~~i~~D~~~~~~~~~--~~~---~~~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~ 103 (207)
T 2qt1_A 29 VTNSGKTTLAKNLQKHLPNCSVISQDDFFKPESEI--ETD---KNGFLQYDVLEALNMEKMMSAISCWMESARHSVVSTD 103 (207)
T ss_dssp STTSSHHHHHHHHHTTSTTEEEEEGGGGBCCGGGS--CBC---TTSCBCCSSGGGBCHHHHHHHHHHHHHHHTTSSCCC-
T ss_pred CCCCCHHHHHHHHHHhcCCcEEEeCCccccCHhHh--hcc---ccCCChhHHHHHhHHHHHHHHHHHHHhCCCCCCcCCC
Confidence 68999999999999988 89999999876532110 000 0000000 011222233333333331
Q ss_pred ----CCCceEEEeCCCCChHHHHHHHhhcCCCCCEEEEEEcCHHHHHHHHhcCCCCCCCCc-HHHHH-HHHHHHhhchhh
Q 040894 68 ----SQNKNFVIDGFPRNEENLSAAENILKIEPNAVLVFDCSEEEMTRRILSRNQGRVDDK-IDTIK-KRLNVYSESTLP 141 (169)
Q Consensus 68 ----~~~~~~i~d~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~~~~~~-~~~~~-~~~~~~~~~~~~ 141 (169)
.+...+|+||+... .. . . ....+|.+||+++|++++.+|+..| ++..+. ...+. ..+..|..
T Consensus 104 ~~~~~~~~~vi~eg~~~~-~~-~---~-~~~~~d~~i~l~~~~~~~~~R~~~R--~~~~e~~~~~~~~~~~~~~~~---- 171 (207)
T 2qt1_A 104 QESAEEIPILIIEGFLLF-NY-K---P-LDTIWNRSYFLTIPYEECKRRRSTR--VYQPPDSPGYFDGHVWPMYLK---- 171 (207)
T ss_dssp ----CCCCEEEEECTTCT-TC-G---G-GTTTCSEEEEEECCHHHHHHHHHHS--CCSSCCCTTHHHHTHHHHHHH----
T ss_pred eeecCCCCEEEEeehHHc-Cc-H---H-HHHhcCeeEEEECCHHHHHHHHHHc--CCCccchHHHHHHHHhHHHHH----
Confidence 12457888996332 11 1 1 2346899999999999999999887 332222 11122 11222221
Q ss_pred HHHHhhh-cCcEEEEeCCCChHHHHHhh
Q 040894 142 VINYYSS-KGKVRKIDAGRPIEEVFDEI 168 (169)
Q Consensus 142 ~~~~~~~-~~~~~~id~~~~~~~v~~~i 168 (169)
..+.+.. .+.++.||++.+++++.++|
T Consensus 172 ~~~~~~~~~~~v~~Id~~~~~eev~~~I 199 (207)
T 2qt1_A 172 YRQEMQDITWEVVYLDGTKSEEDLFLQV 199 (207)
T ss_dssp HHHHGGGCSSCCEEEETTSCHHHHHHHH
T ss_pred HHHHHHhcCCeEEEecCCCCHHHHHHHH
Confidence 2222332 34677899999999999886
No 73
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=99.52 E-value=1.6e-12 Score=84.60 Aligned_cols=153 Identities=14% Similarity=-0.000 Sum_probs=75.8
Q ss_pred CCCCChhHHHHHHHHHhCCcee--chhHHHHHHHhc-CCc-chHHHHHHH-HcCCCCCHHHH---HHHHHHHHHcCCCce
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHL--SAGDLLEAEAES-GSN-DGKMIREYK-KEGKLVPSEII---VKLLQKAMQESQNKN 72 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i--~~d~~~~~~~~~-~~~-~~~~~~~~~-~~~~~~~~~~~---~~~l~~~~~~~~~~~ 72 (169)
||||||||+++.|++.++..++ +.|.+....... ... .+..+.... ..+...++... ...+...+.. +..
T Consensus 11 ~~GsGKST~a~~La~~l~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--g~~ 88 (178)
T 1qhx_A 11 GSSAGKSGIVRCLQSVLPEPWLAFGVDSLIEAMPLKMQSAEGGIEFDADGGVSIGPEFRALEGAWAEGVVAMARA--GAR 88 (178)
T ss_dssp CTTSSHHHHHHHHHHHSSSCEEEEEHHHHHHHSCGGGGTSTTSEEECTTSCEEECHHHHHHHHHHHHHHHHHHHT--TCE
T ss_pred CCCCCHHHHHHHHHHhcCCCeEEeccchHhhhcchhhccchhhccccCCCccccchhHHHHHHHHHHHHHHHHhc--CCe
Confidence 6999999999999999987655 477665432111 000 000000000 00000011111 1223333332 567
Q ss_pred EEEeCCCC-ChHHHHHHHhhcCCCCCEEEEEEcCHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHhhchhhHHHHhhhcCc
Q 040894 73 FVIDGFPR-NEENLSAAENILKIEPNAVLVFDCSEEEMTRRILSRNQGRVDDKIDTIKKRLNVYSESTLPVINYYSSKGK 151 (169)
Q Consensus 73 ~i~d~~~~-~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (169)
+|+++... .......+.......+..+|||++|.+++.+|+..|. .++.. .. . ..+..... + ....
T Consensus 89 vi~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~e~l~~R~~~r~-~~~~~-~~--~---~~~~~~~~-----~-~~~d 155 (178)
T 1qhx_A 89 IIIDDVFLGGAAAQERWRSFVGDLDVLWVGVRCDGAVAEGRETARG-DRVAG-MA--A---KQAYVVHE-----G-VEYD 155 (178)
T ss_dssp EEEEECCTTTHHHHHHHHHHHTTCCEEEEEEECCHHHHHHHHHHTS-SSCTT-HH--H---HHTTGGGT-----T-CCCS
T ss_pred EEEEeccccChHHHHHHHHHhcCCcEEEEEEECCHHHHHHHHHhhC-Ccccc-hh--h---hhchhhcc-----C-CCCc
Confidence 88887432 2221222222122234478999999999999998871 22222 11 1 11111110 1 1234
Q ss_pred EEEEeCCCChHHHHHhh
Q 040894 152 VRKIDAGRPIEEVFDEI 168 (169)
Q Consensus 152 ~~~id~~~~~~~v~~~i 168 (169)
+++.+++.++++++++|
T Consensus 156 ~~idt~~~~~~~~~~~I 172 (178)
T 1qhx_A 156 VEVDTTHKESIECAWAI 172 (178)
T ss_dssp EEEETTSSCHHHHHHHH
T ss_pred EEEECCCCCHHHHHHHH
Confidence 44444456999999876
No 74
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=99.52 E-value=9.1e-13 Score=88.99 Aligned_cols=156 Identities=17% Similarity=0.248 Sum_probs=83.9
Q ss_pred CCCCChhHHHHHHHHHhCCceechhHHHHHHH----hcCCcc--hHHHHHHHHcCCC-----------------C-----
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHLSAGDLLEAEA----ESGSND--GKMIREYKKEGKL-----------------V----- 52 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i~~d~~~~~~~----~~~~~~--~~~~~~~~~~~~~-----------------~----- 52 (169)
||||||||+++.|++.+++.+++.|.+++... ..+-.. ...+.+....-.. +
T Consensus 17 ~~GsGKsTla~~la~~lg~~~~d~g~~~r~~~~~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~v~l~g~~v~~~ir 96 (233)
T 3r20_A 17 PAGTGKSSVSRGLARALGARYLDTGAMYRIATLAVLRAGADLTDPAAIEKAAADAEIGVGSDPDVDAAFLAGEDVSSEIR 96 (233)
T ss_dssp CTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEECCCTTSCCEEETTEECTTGGG
T ss_pred CCCCCHHHHHHHHHHHhCCCcccCCcHHHHHHHHHHHcCCCchhhHHHHHHHHhCCEEEeecCCCcEEEECCeehhhhhc
Confidence 79999999999999999999999999987753 222211 1222222221000 0
Q ss_pred CHHH------------HHHHH---HHHHHcCCC-ceEEEeCCCC-ChHHHHHHHhhcCCCCCEEEEEEcCHHHHHHHHhc
Q 040894 53 PSEI------------IVKLL---QKAMQESQN-KNFVIDGFPR-NEENLSAAENILKIEPNAVLVFDCSEEEMTRRILS 115 (169)
Q Consensus 53 ~~~~------------~~~~l---~~~~~~~~~-~~~i~d~~~~-~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~ 115 (169)
..+. ..+.+ .+.+.. . .++|++|-.. +. ..+..++-|||++|++++.+|...
T Consensus 97 ~~~v~~~~s~va~~~~vr~~l~~~qr~~a~--~~~~~V~~GRd~gt~---------V~pda~lkifl~A~~e~Ra~Rr~~ 165 (233)
T 3r20_A 97 GDAVTGAVSAVSAVPAVRTRLVDIQRKLAT--EGGRVVVEGRDIGTV---------VLPDADVKIFLTASAEERARRRNA 165 (233)
T ss_dssp SHHHHHHHHHHHTCHHHHHHHHHHHHHHHT--SSSCEEEEESSCCCC---------CCTTCSEEEEEECCHHHHHHHHHH
T ss_pred chHHHHHHHHHhcchHHHHHHHHHHHHHHH--hcCcEEEecccceeE---------EcCCCCEEEEEECCHHHHHHHHHH
Confidence 0111 01111 111222 3 6788877311 11 223467999999999999999875
Q ss_pred C--CCCCCCCcHHHHHHHHHHHhhchhhH-HHHhhhcCc-EEEEeCCCChHHHHHhh
Q 040894 116 R--NQGRVDDKIDTIKKRLNVYSESTLPV-INYYSSKGK-VRKIDAGRPIEEVFDEI 168 (169)
Q Consensus 116 R--~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~id~~~~~~~v~~~i 168 (169)
+ ..+.. ...+...+.+.......... ...+....+ +++.+++.+++++.+.|
T Consensus 166 ~l~~~~~~-~~~~~~~~~i~~rD~~d~~r~~~pl~~~~dal~IDTs~l~iee~v~~I 221 (233)
T 3r20_A 166 QNVANGLP-DDYATVLADVQRRDHLDSTRPVSPLRAADDALVVDTSDMDQAQVIAHL 221 (233)
T ss_dssp HHHHTTCC-CCHHHHHHHHHHHHHHHHHSCSSCCSCCTTSEEEECTTSCHHHHHHHH
T ss_pred HHHhccCC-CCHHHHHHHHHHHHHhhhhccccccccccCcEEEECCCCCHHHHHHHH
Confidence 3 11222 23333433332222211100 000111112 66666789999999876
No 75
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=99.51 E-value=4e-13 Score=89.14 Aligned_cols=147 Identities=16% Similarity=0.214 Sum_probs=81.6
Q ss_pred CCCCChhHHHHHHHHHhCCceechhHHHHHHHhcCCcchHHHHHHHHc---CCCCCHHHHH------------------H
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHLSAGDLLEAEAESGSNDGKMIREYKKE---GKLVPSEIIV------------------K 59 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~------------------~ 59 (169)
++||||||+++.|++. |+.+++.|++++... ++.. ..+...+.. ...+...... .
T Consensus 16 ~~GsGKST~~~~La~~-g~~~id~d~~~~~~~-~~~~--~~i~~~~~~~~~~g~i~~~~l~~~~~~~~~~~~~l~~~~~~ 91 (203)
T 1uf9_A 16 NIGSGKSTVAALLRSW-GYPVLDLDALAARAR-ENKE--EELKRLFPEAVVGGRLDRRALARLVFSDPERLKALEAVVHP 91 (203)
T ss_dssp CTTSCHHHHHHHHHHT-TCCEEEHHHHHHHHH-HHTH--HHHHHHCGGGEETTEECHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHC-CCEEEcccHHHHHhc-CChH--HHHHHHHHHHHhCCCcCHHHHHHHHhCCHHHHHHHHHHhCh
Confidence 6899999999999998 999999999987764 2211 111111100 0111111110 1
Q ss_pred HH-HHHHH---cCCCceEEEeCCCCChHHHHHHHhhcCCCCCEEEEEEcCHHHHHHHHhcCCCCCCCCcHHHHHHHHHHH
Q 040894 60 LL-QKAMQ---ESQNKNFVIDGFPRNEENLSAAENILKIEPNAVLVFDCSEEEMTRRILSRNQGRVDDKIDTIKKRLNVY 135 (169)
Q Consensus 60 ~l-~~~~~---~~~~~~~i~d~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~~~~ 135 (169)
.+ ...+. ...+..+|+|+ |..... .+. ..++.+|||++|++++.+|+..| ... ..+.+..++..
T Consensus 92 ~i~~~~i~~~~~~g~~~vi~d~-~~l~~~--~~~----~~~d~~i~l~~~~e~~~~R~~~R--~~~--~~~~~~~~i~~- 159 (203)
T 1uf9_A 92 EVRRLLMEELSRLEAPLVFLEI-PLLFEK--GWE----GRLHGTLLVAAPLEERVRRVMAR--SGL--SREEVLARERA- 159 (203)
T ss_dssp HHHHHHHHHHHTCCCSEEEEEC-TTTTTT--TCG----GGSSEEEEECCCHHHHHHHHHTT--TCC--TTHHHHHHHTT-
T ss_pred HHHHHHHHHhhhcCCCEEEEEe-cceecc--Cch----hhCCEEEEEECCHHHHHHHHHHc--CCC--CHHHHHHHHHH-
Confidence 11 11111 22246677786 332211 111 24789999999999999999987 211 11233333322
Q ss_pred hhchhhHHHHhhhcCcEEEEeCCCChHHHHHhh
Q 040894 136 SESTLPVINYYSSKGKVRKIDAGRPIEEVFDEI 168 (169)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~id~~~~~~~v~~~i 168 (169)
. .+....... .+ ++||++.++++++++|
T Consensus 160 --~-~~~~~~~~~-ad-~vId~~~~~~~~~~~i 187 (203)
T 1uf9_A 160 --Q-MPEEEKRKR-AT-WVLENTGSLEDLERAL 187 (203)
T ss_dssp --S-CCHHHHHHH-CS-EEECCSSHHHHHHHHH
T ss_pred --C-CChhHHHHh-CC-EEEECCCCHHHHHHHH
Confidence 1 112222222 34 4788888999998876
No 76
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=99.49 E-value=4e-13 Score=90.25 Aligned_cols=154 Identities=18% Similarity=0.220 Sum_probs=83.5
Q ss_pred CCCCChhHHHHHHHHHhCCceechhHHHHHH----HhcCCcchHHHHHH-------H-----------HcCCCCCHH---
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHLSAGDLLEAE----AESGSNDGKMIREY-------K-----------KEGKLVPSE--- 55 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i~~d~~~~~~----~~~~~~~~~~~~~~-------~-----------~~~~~~~~~--- 55 (169)
++||||||+++.|++.+|+++++.|.+++.. ...+. ...+.+. + ..+...+..
T Consensus 11 ~~gsGkst~~~~l~~~~g~~~~~~d~~~~~~~~~~~~~~~--~~~i~~~~~~~~~~f~~~~~~g~~i~~~g~~~~~~~~~ 88 (219)
T 2h92_A 11 PAAAGKSTIAKRVASELSMIYVDTGAMYRALTYKYLKLNK--TEDFAKLVDQTTLDLTYKADKGQCVILDNEDVTDFLRN 88 (219)
T ss_dssp CTTSSHHHHHHHHHHHTTCEEEEHHHHHHHHHHHHHHTTS--CSCHHHHHHTCCEEEEECTTCCEEEEETTEECGGGSSS
T ss_pred CCCCCHHHHHHHHHHhcCCceecCChHHHHHHHHHHHhhh--hHHHHHHHHhccccccccccccceEEeCCccchhhcCc
Confidence 6899999999999999999999999999864 23332 1112222 1 112111110
Q ss_pred -HHH-------------HHHH---HHHHcCCCceEEEeCCCCChHHHHHHHhhcCCCCCEEEEEEcCHHHHHHHHhcC--
Q 040894 56 -IIV-------------KLLQ---KAMQESQNKNFVIDGFPRNEENLSAAENILKIEPNAVLVFDCSEEEMTRRILSR-- 116 (169)
Q Consensus 56 -~~~-------------~~l~---~~~~~~~~~~~i~d~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R-- 116 (169)
... +.+. ..+. .+.++|++|-... . . ....++.+|||++|++++.+|+..+
T Consensus 89 ~~~~~~~~~~~~~p~v~~~~~~~~~~~~--~~~~~vi~g~~~~--~-----~-~~~~~~~vi~l~a~~e~~~~R~~~~~~ 158 (219)
T 2h92_A 89 NDVTQHVSYVASKEPVRSFAVKKQKELA--AEKGIVMDGRDIG--T-----V-VLPDADLKVYMIASVEERAERRYKDNQ 158 (219)
T ss_dssp SHHHHHHHHHHTSHHHHHHHHHHHHHHH--TTCCEEEEESSCC--C-----C-CCTTCSEEEEEECCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHhc--cCCcEEEEcCCcc--c-----e-ecCCCCEEEEEECCHHHHHHHHHHHHH
Confidence 000 1111 1122 2557888873110 0 0 2235789999999999999997531
Q ss_pred CCCCCCCcHHHHHHHHHHH--hhchhhHHHHhhhcCcEEEEeCC-CChHHHHHhh
Q 040894 117 NQGRVDDKIDTIKKRLNVY--SESTLPVINYYSSKGKVRKIDAG-RPIEEVFDEI 168 (169)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~id~~-~~~~~v~~~i 168 (169)
..+.. ...+.+.+++..- ....+.....+. ....++||++ .++++++++|
T Consensus 159 ~r~~~-~~~e~~~~~~~~r~~~d~~r~~~~~~~-~~d~~~Id~~~~~~ee~~~~I 211 (219)
T 2h92_A 159 LRGIE-SNFEDLKRDIEARDQYDMNREISPLRK-ADDAVTLDTTGKSIEEVTDEI 211 (219)
T ss_dssp HTTCC-CCHHHHHHHHHHHHHHHHHCSSSCSCC-CTTCEEEECTTCCHHHHHHHH
T ss_pred hcCcc-cCHHHHHHHHHHHHHhhhhhhcccccc-CCCeEEEECCCCCHHHHHHHH
Confidence 11432 2344444444211 111110001122 2343667766 6999999876
No 77
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=99.48 E-value=3.2e-12 Score=85.96 Aligned_cols=155 Identities=16% Similarity=0.243 Sum_probs=81.5
Q ss_pred CCCCChhHHHHHHHHHhCCceechhHHHHHHHhc-CCcchHHHHHHHHc-----------C-------------CCCCHH
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHLSAGDLLEAEAES-GSNDGKMIREYKKE-----------G-------------KLVPSE 55 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i~~d~~~~~~~~~-~~~~~~~~~~~~~~-----------~-------------~~~~~~ 55 (169)
++||||||+++.||+++|+++++ +++++..... |-.. ..+...-+. + .....+
T Consensus 22 ~~gsGk~~i~~~la~~lg~~~~d-~~~~~~~a~~~g~~~-~~~~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (223)
T 3hdt_A 22 EYGSGGRIVGKKLAEELGIHFYD-DDILKLASEKSAVGE-QFFRLADEKAGNNLLYRLGGGRKIDLHSKPSPNDKLTSPE 99 (223)
T ss_dssp CTTSCHHHHHHHHHHHHTCEEEC-HHHHHHHHHCC-------------------------------------------HH
T ss_pred CCCCCHHHHHHHHHHHcCCcEEc-HHHHHHHHHHcCCCH-HHHHHHHhhccccHHHHHhcccccccccccccccccccHH
Confidence 68999999999999999999999 5555554332 2111 001100000 0 000111
Q ss_pred HH----HHHHHHHHHcCCCceEEEeCCCCChHHHHHHHhhcCCCCCEEEEEEcCHHHHHHHHhcCCCCCCCCcHHHHHHH
Q 040894 56 II----VKLLQKAMQESQNKNFVIDGFPRNEENLSAAENILKIEPNAVLVFDCSEEEMTRRILSRNQGRVDDKIDTIKKR 131 (169)
Q Consensus 56 ~~----~~~l~~~~~~~~~~~~i~d~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~~ 131 (169)
.. .+.+..+.. ...+|+.|. ....+..... . ....+.|||++|++++.+|+..+. +++ .+...+.
T Consensus 100 ~~f~~~~~~i~~la~---~~~~Vi~Gr--ggg~vl~~~~-~-~~~~~~VfL~A~~e~r~~Ri~~~~-~~~---~~~a~~~ 168 (223)
T 3hdt_A 100 NLFKFQSEVMRELAE---SEPCIFVGR--AAGYVLDQDE-D-IERLIRIFVYTDKVKKVQRVMEVD-CID---EERAKRR 168 (223)
T ss_dssp HHHHHHHHHHHHHHH---HSCEEEEST--THHHHHHHCT-T-CCEEEEEEEECCHHHHHHHHHHHH-TCC---HHHHHHH
T ss_pred HHHHHHHHHHHHHHh---CCCEEEEeC--Ccchhccccc-C-CCCeEEEEEECCHHHHHHHHHHhc-CCC---HHHHHHH
Confidence 11 223333333 345777753 2111110001 1 122589999999999999998651 232 2334444
Q ss_pred HHHHhhchhhHHHHhh-------hcCcEEEEeCCCChHHHHHhh
Q 040894 132 LNVYSESTLPVINYYS-------SKGKVRKIDAGRPIEEVFDEI 168 (169)
Q Consensus 132 ~~~~~~~~~~~~~~~~-------~~~~~~~id~~~~~~~v~~~i 168 (169)
+........+.+.+|. ..+.+++.++..+++++++.|
T Consensus 169 I~~~d~~R~~~Y~~ytg~~~~~~~~~dl~IdT~~l~~eevv~~I 212 (223)
T 3hdt_A 169 IKKIEKERKEYYKYFTGSEWHSMKNYDLPINTTKLTLEETAELI 212 (223)
T ss_dssp HHHHHHHHHHHHHHHHSSCTTCGGGCSEEEECTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCCCCcccCeEEEECCCCCHHHHHHHH
Confidence 4444444444444331 235666556678999999876
No 78
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=99.47 E-value=1.1e-12 Score=89.25 Aligned_cols=156 Identities=22% Similarity=0.272 Sum_probs=85.0
Q ss_pred CCCCChhHHHHHHHHHhCCceechhHHHHHHH----hcCCcc--hHHHHHHH------------------HcCCCC----
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHLSAGDLLEAEA----ESGSND--GKMIREYK------------------KEGKLV---- 52 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i~~d~~~~~~~----~~~~~~--~~~~~~~~------------------~~~~~~---- 52 (169)
++||||||+++.|++.+|+++++.|++++... ..+... ...+...+ ..+...
T Consensus 24 ~~gsGKst~~~~l~~~lg~~~~d~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~~~~~~~i~~~G~~~~r~l 103 (236)
T 1q3t_A 24 PASSGKSTVAKIIAKDFGFTYLDTGAMYRAATYMALKNQLGVEEVEALLALLDQHPISFGRSETGDQLVFVGDVDITHPI 103 (236)
T ss_dssp SSCSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHHHHHTTCCTTCHHHHHHHHHHSCCEEEEETTTEEEEEETTEEESSSS
T ss_pred CCCCCHHHHHHHHHHHcCCceecCCCeeEcceeeeeccCCCcccHHHHHHHHHhccccccccCCccceEeECCcCchhhh
Confidence 68999999999999999999999999998643 233321 11111111 112111
Q ss_pred CH-HHH------------HHHHHHHHHc-CCCceEEEeCCCCChHHHHHHHhhcCCCCCEEEEEEcCHHHHHHHH----h
Q 040894 53 PS-EII------------VKLLQKAMQE-SQNKNFVIDGFPRNEENLSAAENILKIEPNAVLVFDCSEEEMTRRI----L 114 (169)
Q Consensus 53 ~~-~~~------------~~~l~~~~~~-~~~~~~i~d~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~----~ 114 (169)
.. .+. ...+...+.. ..+.++|++|...... ....++.+|||++|++++.+|+ .
T Consensus 104 ~~~~v~~~~~~~~~~~~vr~~~~~~~~~~~~~~~~v~~g~~~~~~--------~l~~~d~vi~L~a~~e~~~~R~~~~~~ 175 (236)
T 1q3t_A 104 RENEVTNHVSAIAAIPEVREKLVSLQQEIAQQGGIVMDGRDIGTV--------VLPQAELKIFLVASVDERAERRYKENI 175 (236)
T ss_dssp CSHHHHHHHHHHHTSHHHHHHHHHHHHHHHTTSCEEEECSSCSSS--------SGGGCSEEEEEECCHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHccCHHHHHHHHHHHHHhcccCCEEEECCcchhh--------hccCCCEEEEEECCHHHHHHHHHHHHH
Confidence 11 111 0112111111 1256788898744210 1123689999999999999997 4
Q ss_pred cCCCCCCCCcHHHHHHHHHH--HhhchhhHHHHhhhcCcEEEEeCC-CChHHHHHhh
Q 040894 115 SRNQGRVDDKIDTIKKRLNV--YSESTLPVINYYSSKGKVRKIDAG-RPIEEVFDEI 168 (169)
Q Consensus 115 ~R~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~id~~-~~~~~v~~~i 168 (169)
.| ++. ...+.+.+.+.. +....+.....+. ....++||++ .+++++.++|
T Consensus 176 ~R--~~~-~~~e~~~~~i~~R~~~~~~~~~~p~~~-~~d~~vId~~~~s~eev~~~I 228 (236)
T 1q3t_A 176 AK--GIE-TDLETLKKEIAARDYKDSHRETSPLKQ-AEDAVYLDTTGLNIQEVVEKI 228 (236)
T ss_dssp HT--TCC-CCHHHHHHHHHHHHHHHTTCSSSCCSC-CTTCEEEECSSCCHHHHHHHH
T ss_pred hc--CCC-CCHHHHHHHHHHHhhhhhhcccccccc-cCCEEEEcCCCCCHHHHHHHH
Confidence 45 432 233333333321 1111110000121 2244677877 5999999876
No 79
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=99.46 E-value=3.8e-13 Score=89.99 Aligned_cols=146 Identities=15% Similarity=0.120 Sum_probs=75.3
Q ss_pred CCCCChhHHHHHHHHHhC------CceechhHHHHHHHhcCCcchHHHH-HHHHcCCCCCHHHHHHHHHHHHHcCCCceE
Q 040894 1 GPGSGKSTQCSKIAKHLG------FRHLSAGDLLEAEAESGSNDGKMIR-EYKKEGKLVPSEIIVKLLQKAMQESQNKNF 73 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~------~~~i~~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 73 (169)
+|||||||+++.|++.++ ..+++.|.+. ..+.....+....+ ..+ .. ....+...+.. +..+
T Consensus 33 ~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~r-~~l~~~~~~~~~~r~~~~-------~~-~~~~~~~~l~~--g~~V 101 (211)
T 1m7g_A 33 LSASGKSTLAVELEHQLVRDRRVHAYRLDGDNIR-FGLNKDLGFSEADRNENI-------RR-IAEVAKLFADS--NSIA 101 (211)
T ss_dssp STTSSHHHHHHHHHHHHHHHHCCCEEEECHHHHT-TTTTTTCCSSHHHHHHHH-------HH-HHHHHHHHHHT--TCEE
T ss_pred CCCCCHHHHHHHHHHHhccccCCcEEEECChHHh-hhhccccCCCHHHHHHHH-------HH-HHHHHHHHHHC--CCEE
Confidence 689999999999999886 6677755443 22111101100000 000 00 11222333433 6678
Q ss_pred EEeCCCCC-hHHHHHHHhh--------cCCCCCEEEEEEcCHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHhhchhhHHH
Q 040894 74 VIDGFPRN-EENLSAAENI--------LKIEPNAVLVFDCSEEEMTRRILSRNQGRVDDKIDTIKKRLNVYSESTLPVIN 144 (169)
Q Consensus 74 i~d~~~~~-~~~~~~~~~~--------~~~~~~~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (169)
|+| +... ......+... ....|+.+|||++|++++.+|+ .| +.. .+....|.........
T Consensus 102 I~d-~~~~~~~~~~~l~~l~~~~~~~~~~~~p~~vi~Ld~~~e~~~~R~-~r------~~~---~~~r~~~~~~~~~~~~ 170 (211)
T 1m7g_A 102 ITS-FISPYRKDRDTARQLHEVATPGEETGLPFVEVYVDVPVEVAEQRD-PK------GLY---KKAREGVIKEFTGISA 170 (211)
T ss_dssp EEE-CCCCCHHHHHHHHHHHHCCCTTCSCCCCEEEEEEECCHHHHHTSC-TT------CHH---HHHHHTSSSSCBTTTB
T ss_pred EEe-cCCccHHHHHHHHHHhhhcccccccCCCeEEEEEeCCHHHHHHhh-hH------HHH---HHHHhcchhhhhhhhh
Confidence 888 4332 1222222221 1135789999999999999996 22 111 1111222222211112
Q ss_pred Hhhh-cCcEEEEeCCC-ChHHHHHhh
Q 040894 145 YYSS-KGKVRKIDAGR-PIEEVFDEI 168 (169)
Q Consensus 145 ~~~~-~~~~~~id~~~-~~~~v~~~i 168 (169)
.|.. ....++||++. ++++++++|
T Consensus 171 ~y~~~~~~~~~IDt~~~s~eev~~~I 196 (211)
T 1m7g_A 171 PYEAPANPEVHVKNYELPVQDAVKQI 196 (211)
T ss_dssp CCCCCSSCSEEEECSSSCHHHHHHHH
T ss_pred hccCCCCCeEEEECCCCCHHHHHHHH
Confidence 2321 12237788887 999999887
No 80
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=99.45 E-value=2e-12 Score=84.73 Aligned_cols=98 Identities=17% Similarity=0.164 Sum_probs=55.2
Q ss_pred CCCCChhHHHHHHHHHhC-----CceechhHHHHHHHhcCCcchHHHHHHHHcCCCCCHHHHHHH------HHHHHHcCC
Q 040894 1 GPGSGKSTQCSKIAKHLG-----FRHLSAGDLLEAEAESGSNDGKMIREYKKEGKLVPSEIIVKL------LQKAMQESQ 69 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~-----~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------l~~~~~~~~ 69 (169)
+|||||||+++.|++.++ ..+++.|.+ +..+..+.. ......... +...+.. .
T Consensus 21 ~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d~~-~~~~~~~~~--------------~~~~~r~~~~~~~~~~~~~~~~-~ 84 (186)
T 2yvu_A 21 LPGSGKTTIATRLADLLQKEGYRVEVLDGDWA-RTTVSEGAG--------------FTREERLRHLKRIAWIARLLAR-N 84 (186)
T ss_dssp CTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH-HTTTTTTCC--------------CCHHHHHHHHHHHHHHHHHHHT-T
T ss_pred CCCCCHHHHHHHHHHHHHhcCCeEEEeeHHHH-HHHHhhccC--------------CChhhHHHHHHHHHHHHHHHHh-C
Confidence 689999999999999885 245665544 322111111 111111111 1111222 2
Q ss_pred CceEEEeCCCCChHHHHH---HHhhcCCCCCEEEEEEcCHHHHHHHHhc
Q 040894 70 NKNFVIDGFPRNEENLSA---AENILKIEPNAVLVFDCSEEEMTRRILS 115 (169)
Q Consensus 70 ~~~~i~d~~~~~~~~~~~---~~~~~~~~~~~~i~l~~~~~~~~~R~~~ 115 (169)
+..+|+|++......... +.. ....|+.+|||++|++++.+|+..
T Consensus 85 g~~vi~d~~~~~~~~r~~~~~~~~-~~~~~~~~v~L~~~~e~~~~R~~~ 132 (186)
T 2yvu_A 85 GVIVICSFVSPYKQARNMVRRIVE-EEGIPFLEIYVKASLEEVIRRDPK 132 (186)
T ss_dssp TCEEEEECCCCCHHHHHHHHHHHH-HTTCCEEEEEEECCHHHHHHHCHH
T ss_pred CCEEEEeCccccHHHHHHHHHHhh-ccCCCeEEEEEeCCHHHHHHhhhh
Confidence 566777886443222222 222 333588999999999999999743
No 81
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=99.44 E-value=1.5e-12 Score=86.67 Aligned_cols=94 Identities=13% Similarity=0.074 Sum_probs=55.4
Q ss_pred HHHHHHHcCCCceEEEeCCCCChHHHHHHHhhcCCC-CCEEEEEE-cCHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHhh
Q 040894 60 LLQKAMQESQNKNFVIDGFPRNEENLSAAENILKIE-PNAVLVFD-CSEEEMTRRILSRNQGRVDDKIDTIKKRLNVYSE 137 (169)
Q Consensus 60 ~l~~~~~~~~~~~~i~d~~~~~~~~~~~~~~~~~~~-~~~~i~l~-~~~~~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~ 137 (169)
.+...+.. +..+|+|+.+.. ...+.. .... ...+|||+ +|++++.+|+..| ++ +..+.+.+++.....
T Consensus 95 ~i~~~l~~--g~~vi~d~~~~~---~~~l~~-~~~~~~~~~i~l~~~s~e~l~~Rl~~R--~~--~~~~~i~~rl~~~~~ 164 (204)
T 2qor_A 95 EYDLAVGE--GKICLFEMNING---VKQLKE-SKHIQDGIYIFVKPPSIDILLGRLKNR--NT--EKPEEINKRMQELTR 164 (204)
T ss_dssp HHHHHHHT--TCEEEEECCHHH---HHHHHH-CSSCSCCEEEEEECSCHHHHHHHHHTC--TT--SCHHHHHHHHHHHHH
T ss_pred HHHHHHHc--CCeEEEEECHHH---HHHHHH-hcCCCCeEEEEEcCCCHHHHHHHHHHc--CC--CCHHHHHHHHHHHHH
Confidence 44555554 788999875432 223333 2221 23899998 9999999999988 44 234556655554432
Q ss_pred chhhHHHHhhhcCcEEEEeCCCChHHHHHhh
Q 040894 138 STLPVINYYSSKGKVRKIDAGRPIEEVFDEI 168 (169)
Q Consensus 138 ~~~~~~~~~~~~~~~~~id~~~~~~~v~~~i 168 (169)
...+. +....+.++ +++ ++++++++|
T Consensus 165 ~~~~~---~~~~~d~vi-~n~-~~e~~~~~i 190 (204)
T 2qor_A 165 EMDEA---DKVGFNYFI-VND-DLARTYAEL 190 (204)
T ss_dssp HHHHH---HHHTCSEEE-ECS-SHHHHHHHH
T ss_pred HHHHh---hhccCcEEE-ECc-CHHHHHHHH
Confidence 22111 223345544 444 899988876
No 82
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=99.43 E-value=8.4e-14 Score=96.19 Aligned_cols=72 Identities=13% Similarity=0.309 Sum_probs=47.0
Q ss_pred CCCCEEEEEEcCHHHHHHHHhcCCCCCCC---CcHHHHH---HHHHHHhhc--hhhHHHHhhhcCcEEEEeCCCChHHHH
Q 040894 94 IEPNAVLVFDCSEEEMTRRILSRNQGRVD---DKIDTIK---KRLNVYSES--TLPVINYYSSKGKVRKIDAGRPIEEVF 165 (169)
Q Consensus 94 ~~~~~~i~l~~~~~~~~~R~~~R~~~~~~---~~~~~~~---~~~~~~~~~--~~~~~~~~~~~~~~~~id~~~~~~~v~ 165 (169)
..||++|||++|++++.+|+.+| +++. ...+.+. ..+..|... ..+.+..+.. ..+++||++.++++++
T Consensus 173 ~~pd~vi~L~~~~e~~~~Ri~~R--~r~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~y~~~~~-~~~~~Id~~~~~eev~ 249 (263)
T 1p5z_B 173 LELDGIIYLQATPETCLHRIYLR--GRNEEQGIPLEYLEKLHYKHESWLLHRTLKTNFDYLQE-VPILTLDVNEDFKDKY 249 (263)
T ss_dssp HCCSEEEEEECCHHHHHHHHHHH--CCGGGTTCCHHHHHHHHHHHHHHHTTCCCCCSCGGGGG-SCEEEEECCSCHHHHH
T ss_pred CCCCeEEEEECCHHHHHHHHHhc--CCccccCccHHHHHHHHHHHHHHHhhccchhhhhhhcc-CCEEEEECCCCHHHHH
Confidence 36999999999999999999887 4432 2223333 233333221 2223222333 4589999999999999
Q ss_pred Hhh
Q 040894 166 DEI 168 (169)
Q Consensus 166 ~~i 168 (169)
++|
T Consensus 250 ~~I 252 (263)
T 1p5z_B 250 ESL 252 (263)
T ss_dssp HHH
T ss_pred HHH
Confidence 876
No 83
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=99.43 E-value=3.5e-12 Score=83.08 Aligned_cols=103 Identities=14% Similarity=0.099 Sum_probs=53.1
Q ss_pred CCCCChhHHHHHHHHHh---CCceechhH-HHHHHHhcCCcchHHHHHHHHcCCCCCHHHH--HHHHHHHHHcCCCceEE
Q 040894 1 GPGSGKSTQCSKIAKHL---GFRHLSAGD-LLEAEAESGSNDGKMIREYKKEGKLVPSEII--VKLLQKAMQESQNKNFV 74 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~---~~~~i~~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~i 74 (169)
++||||||+++.|++.+ |++++.+|. .++..+.........- ..... .......+.. .+. ++
T Consensus 13 ~~GsGKST~~~~L~~~l~~~g~~~i~~d~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~-~~~-~~ 80 (179)
T 2pez_A 13 LSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQGLNKNLGFSPED----------REENVRRIAEVAKLFAD-AGL-VC 80 (179)
T ss_dssp CTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHTTTTTTTCCSSHHH----------HHHHHHHHHHHHHHHHH-TTC-EE
T ss_pred CCCCCHHHHHHHHHHHHhhCCCcEEEECChHHHHHHhhcccccccc----------HHHHHHHHHHHHHHHHH-CCC-EE
Confidence 68999999999999988 887775432 2222111100000000 00000 1111122222 243 44
Q ss_pred EeCCCCC-h---HHHHHHHhhcCCCCCEEEEEEcCHHHHHHHHhcC
Q 040894 75 IDGFPRN-E---ENLSAAENILKIEPNAVLVFDCSEEEMTRRILSR 116 (169)
Q Consensus 75 ~d~~~~~-~---~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R 116 (169)
+.++... . .....+.. ....|+.+|||++|++++.+|+.+|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~l~~~~e~~~~R~~~~ 125 (179)
T 2pez_A 81 ITSFISPYTQDRNNARQIHE-GASLPFFEVFVDAPLHVCEQRDVKG 125 (179)
T ss_dssp EEECCCCCHHHHHHHHHHHH-HTTCCEEEEEEECCHHHHHHHCTTS
T ss_pred EEecCCcchHHHHHHHHHhh-ccCCCeEEEEEeCCHHHHHHHHhhh
Confidence 4333222 1 22222222 2346889999999999999998653
No 84
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=99.39 E-value=1.7e-12 Score=87.87 Aligned_cols=71 Identities=17% Similarity=0.226 Sum_probs=39.4
Q ss_pred CCCCCEEEEEEcCHHHHHHHHhcCCCCCCCCc---HHHHHHHHHHHhhchhhHHHHh--hhcCcEEEEeCCCChHHHHHh
Q 040894 93 KIEPNAVLVFDCSEEEMTRRILSRNQGRVDDK---IDTIKKRLNVYSESTLPVINYY--SSKGKVRKIDAGRPIEEVFDE 167 (169)
Q Consensus 93 ~~~~~~~i~l~~~~~~~~~R~~~R~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~id~~~~~~~v~~~ 167 (169)
...||++|||++|++++.+|+..| ++..+. .+...+....|.+.. ..| .....+++||++++++++.++
T Consensus 144 ~~~pD~vi~Ld~~~e~~~~Ri~~R--~r~~e~~~~~~~~~rv~~~~~~~~----~~~~~~~~~~~~vId~~~~~eev~~~ 217 (230)
T 2vp4_A 144 HVQADLIIYLRTSPEVAYERIRQR--ARSEESCVPLKYLQELHELHEDWL----IHQRRPQSCKVLVLDADLNLENIGTE 217 (230)
T ss_dssp CCCCSEEEEEECCHHHHHHHHHHH--CCGGGTTCCHHHHHHHHHHHHHHH----TSCCSSCCCEEEEEECCC--------
T ss_pred cCCCCEEEEEeCCHHHHHHHHHHc--CCcccccCcHHHHHHHHHHHHHHH----HHhcccCCCCEEEEECCCCHHHHHHH
Confidence 567999999999999999999887 554332 223332223333221 111 234578999999999999988
Q ss_pred hC
Q 040894 168 IK 169 (169)
Q Consensus 168 i~ 169 (169)
|+
T Consensus 218 I~ 219 (230)
T 2vp4_A 218 YQ 219 (230)
T ss_dssp --
T ss_pred HH
Confidence 74
No 85
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=99.38 E-value=1.6e-11 Score=89.99 Aligned_cols=90 Identities=22% Similarity=0.170 Sum_probs=65.7
Q ss_pred CCCCChhHHHHHHHHHhCCceechhHHHHHHHhcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCCceEEEeCCCC
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHLSAGDLLEAEAESGSNDGKMIREYKKEGKLVPSEIIVKLLQKAMQESQNKNFVIDGFPR 80 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~d~~~~ 80 (169)
+|||||||+++.|++.+++.+++.|.+- . .......+...+.. +..+|+|+...
T Consensus 266 ~pGSGKSTla~~L~~~~~~~~i~~D~~~--------~----------------~~~~~~~~~~~l~~--g~~vIiD~~~~ 319 (416)
T 3zvl_A 266 FPGAGKSTFIQEHLVSAGYVHVNRDTLG--------S----------------WQRCVSSCQAALRQ--GKRVVIDNTNP 319 (416)
T ss_dssp CTTSSHHHHHHHHTGGGTCEECCGGGSC--------S----------------HHHHHHHHHHHHHT--TCCEEEESCCC
T ss_pred CCCCCHHHHHHHHHHhcCcEEEccchHH--------H----------------HHHHHHHHHHHHhc--CCcEEEeCCCC
Confidence 6999999999999999999999988751 0 01113344444544 77899999877
Q ss_pred ChHHHHHHHhh--cCCCCCEEEEEEcCHHHHHHHHhcC
Q 040894 81 NEENLSAAENI--LKIEPNAVLVFDCSEEEMTRRILSR 116 (169)
Q Consensus 81 ~~~~~~~~~~~--~~~~~~~~i~l~~~~~~~~~R~~~R 116 (169)
.......+... ....+..+|||++|.+++.+|+..|
T Consensus 320 ~~~~r~~~~~~~~~~~~~~~~v~l~~~~e~l~~R~~~R 357 (416)
T 3zvl_A 320 DVPSRARYIQCAKDAGVPCRCFNFCATIEQARHNNRFR 357 (416)
T ss_dssp SHHHHHHHHHHHHHHTCCEEEEEECCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCeEEEEEEeCCHHHHHHHHHhh
Confidence 66555544331 2234568999999999999999988
No 86
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=99.37 E-value=1.4e-11 Score=86.04 Aligned_cols=110 Identities=15% Similarity=0.220 Sum_probs=63.8
Q ss_pred CCCCChhHHHHHHHHHh--CCceechhHHHHHHHhcCCcchHHHHHHHHcC----CCCCHHHHHHHHHHHHHcCCCceEE
Q 040894 1 GPGSGKSTQCSKIAKHL--GFRHLSAGDLLEAEAESGSNDGKMIREYKKEG----KLVPSEIIVKLLQKAMQESQNKNFV 74 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~--~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~i 74 (169)
||||||||+++.|++.+ ++.+++.|.+.... .. .......+.... ...........+...+.. +..+|
T Consensus 41 ~sGsGKSTla~~L~~~~~~~~~~Is~D~~R~~~-~~---~~~~~~~~~~~a~~~~~~~~~~~~~~~v~~~l~~--g~~vI 114 (287)
T 1gvn_B 41 QPGSGKTSLRSAIFEETQGNVIVIDNDTFKQQH-PN---FDELVKLYEKDVVKHVTPYSNRMTEAIISRLSDQ--GYNLV 114 (287)
T ss_dssp CTTSCTHHHHHHHHHHTTTCCEEECTHHHHTTS-TT---HHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHHHH--TCCEE
T ss_pred CCCCCHHHHHHHHHHHhCCCeEEEechHhHHhc-hh---hHHHHHHccchhhhhhhHHHHHHHHHHHHHHHhc--CCeEE
Confidence 79999999999999998 67888876553221 10 011111111100 001112223444555554 77899
Q ss_pred EeCCCCChHHHHHHHhh--cCCCCCEEEEEEcCHHHH----HHHHhcC
Q 040894 75 IDGFPRNEENLSAAENI--LKIEPNAVLVFDCSEEEM----TRRILSR 116 (169)
Q Consensus 75 ~d~~~~~~~~~~~~~~~--~~~~~~~~i~l~~~~~~~----~~R~~~R 116 (169)
+|+..........+... ....+..++++.+|++++ .+|+..|
T Consensus 115 ld~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~p~~~~~l~~~~Rl~~R 162 (287)
T 1gvn_B 115 IEGTGRTTDVPIQTATMLQAKGYETKMYVMAVPKINSYLGTIERYETM 162 (287)
T ss_dssp ECCCCCCSHHHHHHHHHHHTTTCEEEEEEECCCHHHHHHHHHHHHHHH
T ss_pred EECCCCCHHHHHHHHHHHHhCCCcEEEEEEECCHHHHHHHHHHHHHHH
Confidence 99876665533333221 222344578999999999 8888765
No 87
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=99.30 E-value=3.2e-14 Score=95.22 Aligned_cols=71 Identities=18% Similarity=0.173 Sum_probs=44.1
Q ss_pred CCCCEEEEEEcCHHHHHHHHhcCCC---CCC---CC-cHHHHHHHHHHHhhchhhHHHHhhhcCcEEEEeCCCChHHHHH
Q 040894 94 IEPNAVLVFDCSEEEMTRRILSRNQ---GRV---DD-KIDTIKKRLNVYSESTLPVINYYSSKGKVRKIDAGRPIEEVFD 166 (169)
Q Consensus 94 ~~~~~~i~l~~~~~~~~~R~~~R~~---~~~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~v~~ 166 (169)
..||.+|||++|++++.+|+..|.. ++. .+ ..+...+....|.... +.+. ...+++||++.+++++.+
T Consensus 131 ~~~d~~i~l~~~~~~~~~R~~~R~~~~~~~~~d~~e~~~~~~~~~~~~~~~~~----~~~~-~~~~~vId~~~~~~~v~~ 205 (214)
T 1gtv_A 131 PKPDWQVLLAVSAELAGERSRGRAQRDPGRARDNYERDAELQQRTGAVYAELA----AQGW-GGRWLVVGADVDPGRLAA 205 (214)
T ss_dssp CBCEEEEEEEEEHHHHHHHHHHHHHEBBEEEEEEEEEEHHHHHHHHHHHHHHH----HEEE-EEEEEEEEEEEBHHHHHH
T ss_pred CCCCEEEEEeCCHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHH----HhCC-CCCEEEEeCCCCHHHHHH
Confidence 3699999999999999999998711 111 11 1222222222332221 1111 136789999999999999
Q ss_pred hhC
Q 040894 167 EIK 169 (169)
Q Consensus 167 ~i~ 169 (169)
+|+
T Consensus 206 ~i~ 208 (214)
T 1gtv_A 206 TLA 208 (214)
T ss_dssp HHC
T ss_pred Hhc
Confidence 874
No 88
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=99.28 E-value=1.7e-11 Score=83.53 Aligned_cols=72 Identities=13% Similarity=0.166 Sum_probs=46.5
Q ss_pred CCCCEEEEEEcCHHHHHHHHhcCCCCCCCCc---HHHHHHHHHHHhhchhh----H-HHHhhhcCcEEEEeCCCChHHHH
Q 040894 94 IEPNAVLVFDCSEEEMTRRILSRNQGRVDDK---IDTIKKRLNVYSESTLP----V-INYYSSKGKVRKIDAGRPIEEVF 165 (169)
Q Consensus 94 ~~~~~~i~l~~~~~~~~~R~~~R~~~~~~~~---~~~~~~~~~~~~~~~~~----~-~~~~~~~~~~~~id~~~~~~~v~ 165 (169)
..||.+|||++|++++.+|+..| +++.+. .+.+.+....|.....+ . ++.+ ....+++||++.+++++.
T Consensus 148 ~~pd~~i~l~~~~~~~~~R~~~R--~r~~e~~~~~~~~~~v~~~y~~~~~~~~~p~~~~~~-~~~~~~~Id~~~~~~~v~ 224 (241)
T 2ocp_A 148 ITLHGFIYLQASPQVCLKRLYQR--AREEEKGIELAYLEQLHGQHEAWLIHKTTKLHFEAL-MNIPVLVLDVNDDFSEEV 224 (241)
T ss_dssp HCCCEEEEEECCHHHHHHHHHHS--CCTTTTTCCHHHHHHHHHHHHHHHTSCCSCCCCTTG-GGCCEEEEECCSCTTTCH
T ss_pred cCCCEEEEEECCHHHHHHHHHhc--CCcccccCCHHHHHHHHHHHHHHHhhcccccccccc-CCCCEEEEECCCChhhCH
Confidence 37999999999999999999988 554443 34444333333332211 0 0012 345789999999988876
Q ss_pred Hhh
Q 040894 166 DEI 168 (169)
Q Consensus 166 ~~i 168 (169)
+.|
T Consensus 225 ~~i 227 (241)
T 2ocp_A 225 TKQ 227 (241)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
No 89
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=99.27 E-value=1.1e-10 Score=77.30 Aligned_cols=101 Identities=16% Similarity=0.056 Sum_probs=55.0
Q ss_pred CCCCChhHHHHHHHHHh---CCc--eechhHHHHHHHhcCCcch-HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCCceEE
Q 040894 1 GPGSGKSTQCSKIAKHL---GFR--HLSAGDLLEAEAESGSNDG-KMIREYKKEGKLVPSEIIVKLLQKAMQESQNKNFV 74 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~---~~~--~i~~d~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i 74 (169)
||||||||+++.|+..+ |.. +++.+++.... ..+..+. ......+ . ....+...+.. .+..+|
T Consensus 33 ~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~~~~~-~~~~~~~~~~~~~~~--------~-~~~~~~~~~~~-~~~~vi 101 (200)
T 3uie_A 33 LSGSGKSTLACALNQMLYQKGKLCYILDGDNVRHGL-NRDLSFKAEDRAENI--------R-RVGEVAKLFAD-AGIICI 101 (200)
T ss_dssp STTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHTTTT-TTTCCSSHHHHHHHH--------H-HHHHHHHHHHH-TTCEEE
T ss_pred CCCCCHHHHHHHHHHHHHhcCceEEEecCchhhhHh-hcccCcChHHHHHHH--------H-HHHHHHHHHHh-CCceEE
Confidence 79999999999999988 555 78876654321 1111110 0000000 0 01112222222 255666
Q ss_pred EeCCCCChHHHHHHHhhcCC-CCCEEEEEEcCHHHHHHHH
Q 040894 75 IDGFPRNEENLSAAENILKI-EPNAVLVFDCSEEEMTRRI 113 (169)
Q Consensus 75 ~d~~~~~~~~~~~~~~~~~~-~~~~~i~l~~~~~~~~~R~ 113 (169)
.+...........+.. ... ....+|||++|++++.+|+
T Consensus 102 ~~~~~~~~~~r~~~~~-~~~~~~~~~v~L~a~~e~~~~R~ 140 (200)
T 3uie_A 102 ASLISPYRTDRDACRS-LLPEGDFVEVFMDVPLSVCEARD 140 (200)
T ss_dssp EECCCCCHHHHHHHHH-TSCTTSEEEEEECCCHHHHHHHC
T ss_pred EecCCchHHHHHHHHH-hcCCCCEEEEEEeCCHHHHHHhc
Confidence 6554333344444444 222 2446799999999999997
No 90
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=99.26 E-value=7.2e-11 Score=89.85 Aligned_cols=104 Identities=13% Similarity=0.067 Sum_probs=57.2
Q ss_pred CCCCChhHHHHHHHHHh---CCceechh-HHHHHHHhcCCcchHHHH-HHHHcCCCCCHHHHHHHHHHHHHcCCCceEEE
Q 040894 1 GPGSGKSTQCSKIAKHL---GFRHLSAG-DLLEAEAESGSNDGKMIR-EYKKEGKLVPSEIIVKLLQKAMQESQNKNFVI 75 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~---~~~~i~~d-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~ 75 (169)
+|||||||+|+.|++.+ |+.++++| +.++..+..+..+...-+ ..+ +. ..+.+...+.. +..+|+
T Consensus 60 lsGSGKSTlAr~La~~L~~~G~~~v~lDgD~iR~~L~~~~~fs~~dree~~-------r~-i~eva~~~l~~--G~iVI~ 129 (630)
T 1x6v_B 60 LSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQGLNKNLGFSPEDREENV-------RR-IAEVAKLFADA--GLVCIT 129 (630)
T ss_dssp STTSSHHHHHHHHHHHHHHTTCCEEEESHHHHTTTTTTTCCSSHHHHHHHH-------HH-HHHHHHHHHHT--TCEEEE
T ss_pred CCCCCHHHHHHHHHHHHHhcCCeEEEechHHhhhccCccccCChhhhHHHH-------HH-HHHHHHHHHhC--CCEEEE
Confidence 58999999999999999 88776654 344432221111110000 000 00 12222223332 555666
Q ss_pred eCCCCC---hHHHHHHHhhcCCCCCEEEEEEcCHHHHHHHHhc
Q 040894 76 DGFPRN---EENLSAAENILKIEPNAVLVFDCSEEEMTRRILS 115 (169)
Q Consensus 76 d~~~~~---~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~ 115 (169)
+..... ......+.. ....++++|||++|++++.+|+.+
T Consensus 130 d~~s~~~~~r~~~r~ll~-~~g~p~~vV~Ldap~Evl~~Rl~r 171 (630)
T 1x6v_B 130 SFISPYTQDRNNARQIHE-GASLPFFEVFVDAPLHVCEQRDVK 171 (630)
T ss_dssp ECCCCCHHHHHHHHHHHH-TTTCCEEEEEEECCHHHHHHHCTT
T ss_pred eCchhhHHHHHHHHHHHH-hCCCCeEEEEEECCHHHHHHHhcc
Confidence 632111 222333333 334578999999999999999864
No 91
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=99.23 E-value=1.5e-11 Score=84.45 Aligned_cols=109 Identities=18% Similarity=0.190 Sum_probs=61.0
Q ss_pred CCCCChhHHHHHHHHHhC--CceechhHHHHHH-----HhcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCCceE
Q 040894 1 GPGSGKSTQCSKIAKHLG--FRHLSAGDLLEAE-----AESGSNDGKMIREYKKEGKLVPSEIIVKLLQKAMQESQNKNF 73 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~--~~~i~~d~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 73 (169)
||||||||+++.|++.++ ..+++.|.+-... +.. ..+.....+... .........+...+.. +..+
T Consensus 40 ~~GsGKSTla~~L~~~l~~~~~~~~~D~~r~~~~~~~~i~~--~~g~~~~~~~~~---~~~~~~~~~~~~~~~~--g~~v 112 (253)
T 2p5t_B 40 QSGAGKTTIHRIKQKEFQGNIVIIDGDSFRSQHPHYLELQQ--EYGKDSVEYTKD---FAGKMVESLVTKLSSL--GYNL 112 (253)
T ss_dssp CGGGTTHHHHHHHHHHTTTCCEEECGGGGGTTSTTHHHHHT--TCSSTTHHHHHH---HHHHHHHHHHHHHHHT--TCCE
T ss_pred CCCCCHHHHHHHHHHhcCCCcEEEecHHHHHhchhHHHHHH--HcCchHHHHhhH---HHHHHHHHHHHHHHhc--CCCE
Confidence 699999999999999987 4567766542110 010 011111111100 0011122333344433 5689
Q ss_pred EEeCCCCChHHHHHHHhh--cCCCCCEEEEEEcCHHHHHHHHhcC
Q 040894 74 VIDGFPRNEENLSAAENI--LKIEPNAVLVFDCSEEEMTRRILSR 116 (169)
Q Consensus 74 i~d~~~~~~~~~~~~~~~--~~~~~~~~i~l~~~~~~~~~R~~~R 116 (169)
|+|+++........+... ....+..++++.+|++++.+|+..|
T Consensus 113 Vid~~~~~~~~~~~~~~~l~~~g~~v~lv~l~~~~e~~~~R~~~R 157 (253)
T 2p5t_B 113 LIEGTLRTVDVPKKTAQLLKNKGYEVQLALIATKPELSYLSTLIR 157 (253)
T ss_dssp EEECCTTSSHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHHH
T ss_pred EEeCCCCCHHHHHHHHHHHHHCCCcEEEEEEeCCHHHHHHHHHHH
Confidence 999987755443322221 2233345678899999999999887
No 92
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=99.21 E-value=6.1e-11 Score=89.43 Aligned_cols=148 Identities=16% Similarity=0.044 Sum_probs=76.0
Q ss_pred CCCCChhHHHHHHHHHhCC-----ceechhHHHHHHHhcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCCceEEE
Q 040894 1 GPGSGKSTQCSKIAKHLGF-----RHLSAGDLLEAEAESGSNDGKMIREYKKEGKLVPSEIIVKLLQKAMQESQNKNFVI 75 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~-----~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~ 75 (169)
+|||||||+++.|++.++. .+++.|.+ +..+..+..+...-+... -......+...+.. +..+|+
T Consensus 380 ~~GsGKSTia~~La~~L~~~G~~~~~ld~D~i-r~~l~~~~~f~~~er~~~-------l~~i~~~~~~~l~~--G~~VI~ 449 (546)
T 2gks_A 380 LPCAGKSTIAEILATMLQARGRKVTLLDGDVV-RTHLSRGLGFSKEDRITN-------ILRVGFVASEIVKH--NGVVIC 449 (546)
T ss_dssp STTSSHHHHHHHHHHHHHHTTCCEEEECHHHH-HHHTCTTCCSSHHHHHHH-------HHHHHHHHHHHHHT--TCEEEE
T ss_pred CCCCCHHHHHHHHHHHhhhcCCeEEEECchHh-hhhhcccccccHHHHHHH-------HHHHHHHHHHHHhC--CCEEEE
Confidence 5899999999999998863 67886654 443322211111111000 00011223333333 778888
Q ss_pred eCCCCChHHHHHHHhhcCCCCC-EEEEEEcCHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHhhchhhHHHHhhhcCcEEE
Q 040894 76 DGFPRNEENLSAAENILKIEPN-AVLVFDCSEEEMTRRILSRNQGRVDDKIDTIKKRLNVYSESTLPVINYYSSKGKVRK 154 (169)
Q Consensus 76 d~~~~~~~~~~~~~~~~~~~~~-~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (169)
|...........+.. ....++ .+|||++|.+++.+|+.++ ....+.. ..+..+.....+. ... .... ++
T Consensus 450 d~~~~~~~~r~~~~~-~l~~~d~~vV~L~~~~e~~~~Rl~r~--~~~~~~~----~~i~~~~~vr~~~-e~~-~~ad-iv 519 (546)
T 2gks_A 450 ALVSPYRSARNQVRN-MMEEGKFIEVFVDAPVEVCEERDVKG--LYKKAKE----GLIKGFTGVDDPY-EPP-VAPE-VR 519 (546)
T ss_dssp ECCCCCHHHHHHHHT-TSCTTCEEEEEEECCGGGHHHHCCSS--HHHHC----------CCBTTTBCC-CCC-SSCS-EE
T ss_pred EcCCCCHHHHHHHHH-HhhcCCEEEEEEeCCHHHHHHHhhcc--ccccccH----HHHHHHHhhhhcc-ccc-cCCc-EE
Confidence 964333333333333 333356 8999999999999998632 0000000 1111111111111 001 1223 67
Q ss_pred EeCC-CChHHHHHhh
Q 040894 155 IDAG-RPIEEVFDEI 168 (169)
Q Consensus 155 id~~-~~~~~v~~~i 168 (169)
||++ .++++++++|
T Consensus 520 IDts~~s~eev~~~I 534 (546)
T 2gks_A 520 VDTTKLTPEESALKI 534 (546)
T ss_dssp EETTTSCHHHHHHHH
T ss_pred EECCCCCHHHHHHHH
Confidence 7775 8999999887
No 93
>1p6x_A Thymidine kinase; P-loop, LID, transferase; HET: THM; 2.00A {Equid herpesvirus 4} SCOP: c.37.1.1 PDB: 1p72_A* 1p73_A* 1p75_A*
Probab=99.13 E-value=8.2e-11 Score=83.29 Aligned_cols=44 Identities=27% Similarity=0.338 Sum_probs=32.3
Q ss_pred CCCCEEEEEEcCHHHHHHHHhcCCCCCCCC--cHHHHHHHHHHHhhch
Q 040894 94 IEPNAVLVFDCSEEEMTRRILSRNQGRVDD--KIDTIKKRLNVYSEST 139 (169)
Q Consensus 94 ~~~~~~i~l~~~~~~~~~R~~~R~~~~~~~--~~~~~~~~~~~~~~~~ 139 (169)
..||++|||++|++++++|+.+| +|+.+ ..+++.+....|....
T Consensus 156 ~~PDLtIyLd~~pe~~l~RI~~R--gR~~Eri~~eyl~~vr~~Y~~l~ 201 (334)
T 1p6x_A 156 PQGGNIVVTTLNVEEHIRRLRTR--ARIGEQIDITLIATLRNVYFMLV 201 (334)
T ss_dssp CTTEEEEEEECCHHHHHHHHHHH--SCTTCCCCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEEECCHHHHHHHHHhc--CCCcccCCHHHHHHHHHHHHHHH
Confidence 56999999999999999999887 54433 3355665556666554
No 94
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=99.11 E-value=1.3e-09 Score=72.15 Aligned_cols=92 Identities=12% Similarity=0.217 Sum_probs=48.9
Q ss_pred HHHHHHHcCCCceEEEeCCCCChHHHHHHHhhcCCCCCEEEEEEcCHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHhhch
Q 040894 60 LLQKAMQESQNKNFVIDGFPRNEENLSAAENILKIEPNAVLVFDCSEEEMTRRILSRNQGRVDDKIDTIKKRLNVYSEST 139 (169)
Q Consensus 60 ~l~~~~~~~~~~~~i~d~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~~~ 139 (169)
.+...+.. +..+|+|+.+.... .+.. ....+..++++.+|++++.+|+.+| ++..+ +.+.+++.......
T Consensus 89 ~i~~~l~~--g~~vi~d~~~~~~~---~~~~-~~~~~~~v~~~~~~~e~l~~Rl~~R--~~~~~--~~i~~rl~~~~~~~ 158 (205)
T 3tr0_A 89 WVLRQLKA--GRDVLLEIDWQGAR---QIRE-LFPPALSIFILPPSIEALRERLIKR--RQDDT--AIIEQRLALAREEM 158 (205)
T ss_dssp HHHHHHHT--TCEEEEECCHHHHH---HHHH-HCTTCEEEEEECSCHHHHHHHHHTC--TTSCS--STHHHHHHHHHHHH
T ss_pred HHHHHHHc--CCeEEEEECHHHHH---HHHH-hCCCcEEEEEECcCHHHHHHHHHHh--CCCCH--HHHHHHHHHHHHHH
Confidence 34445554 67788886433322 2223 3334444444455799999999998 43222 23334444432221
Q ss_pred hhHHHHhhhcCcEEEEeCCCChHHHHHhh
Q 040894 140 LPVINYYSSKGKVRKIDAGRPIEEVFDEI 168 (169)
Q Consensus 140 ~~~~~~~~~~~~~~~id~~~~~~~v~~~i 168 (169)
.++ ...+++++ ++ +++++.++|
T Consensus 159 ----~~~-~~~d~vi~-n~-~~~~~~~~l 180 (205)
T 3tr0_A 159 ----AHY-KEFDYLVV-ND-NFDQAVQNL 180 (205)
T ss_dssp ----TTG-GGCSEEEE-CS-SHHHHHHHH
T ss_pred ----hcc-cCCCEEEE-CC-CHHHHHHHH
Confidence 112 23455544 44 898888775
No 95
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=99.07 E-value=1.1e-10 Score=76.34 Aligned_cols=152 Identities=14% Similarity=0.216 Sum_probs=77.8
Q ss_pred CCCCChhHHHHHHHHHhCC-ceechhHHHHHHHhcCCcc--------hHHHHHHHHcCCCCCH--------HHHHHHHHH
Q 040894 1 GPGSGKSTQCSKIAKHLGF-RHLSAGDLLEAEAESGSND--------GKMIREYKKEGKLVPS--------EIIVKLLQK 63 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~-~~i~~d~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~--------~~~~~~l~~ 63 (169)
|+|||||||++.|.+.+.- ..++.....+.+ .+|... ...+......+.++.. ......+..
T Consensus 9 PSG~GK~Tl~~~L~~~~~~~~~~svs~TTR~p-R~gE~~G~dY~Fvs~~eF~~~i~~g~flE~~~~~g~~YGt~~~~v~~ 87 (186)
T 1ex7_A 9 PSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTP-RAGEVNGKDYNFVSVDEFKSMIKNNEFIEWAQFSGNYYGSTVASVKQ 87 (186)
T ss_dssp CTTSSHHHHHHHHHHHCTTTEEECCCEECSCC-CTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEEEEEHHHHHH
T ss_pred CCCCCHHHHHHHHHHhCCCCeEEEEEEeccCC-CCCCcCCceeEeecHHHHHHHHHcCCEEEEEEEcCceeeeecceeee
Confidence 8999999999999887642 122221122211 111111 1122222222222110 001455666
Q ss_pred HHHcCCCceEEEeCCCCChHHHHHHHhhcC-CCCCEEEEEEcCHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHhhchhhH
Q 040894 64 AMQESQNKNFVIDGFPRNEENLSAAENILK-IEPNAVLVFDCSEEEMTRRILSRNQGRVDDKIDTIKKRLNVYSESTLPV 142 (169)
Q Consensus 64 ~~~~~~~~~~i~d~~~~~~~~~~~~~~~~~-~~~~~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (169)
.+.. +..+|+|.-+... ..+.. .. ..+..++.+..+.+++.+|+.+| |. ++.+.+.+|+..........
T Consensus 88 ~l~~--g~~vil~id~~g~---~~~k~-~~~~~~~~Ifi~pps~e~L~~RL~~R--g~--e~~e~i~~Rl~~a~~e~~~~ 157 (186)
T 1ex7_A 88 VSKS--GKTCILDIDMQGV---KSVKA-IPELNARFLFIAPPSVEDLKKRLEGR--GT--ETEESINKRLSAAQAELAYA 157 (186)
T ss_dssp HHHH--TSEEEEECCHHHH---HHHHT-CGGGCCEEEEEECSCHHHHHHHHHHH--CC--SCHHHHHHHHHHHHHHHHHH
T ss_pred hhhC--CCEEEecCCHHHH---HHHHH-hcccCceEEEEeCCCHHHHHHHHHhc--CC--CCHHHHHHHHHHHHHHHhhc
Confidence 6665 7888988643333 23332 22 23444555556789999999988 54 45567777776554322111
Q ss_pred HHHhhhcCcEEEEeCCCChHHHHHhh
Q 040894 143 INYYSSKGKVRKIDAGRPIEEVFDEI 168 (169)
Q Consensus 143 ~~~~~~~~~~~~id~~~~~~~v~~~i 168 (169)
.....+.++++. +.++.+++|
T Consensus 158 ---~~~~fD~vIvNd--dle~a~~~l 178 (186)
T 1ex7_A 158 ---ETGAHDKVIVND--DLDKAYKEL 178 (186)
T ss_dssp ---TTTCSSEEEECS--SHHHHHHHH
T ss_pred ---cccCCcEEEECc--CHHHHHHHH
Confidence 111234455543 577777665
No 96
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=99.03 E-value=1.6e-09 Score=82.13 Aligned_cols=104 Identities=13% Similarity=0.012 Sum_probs=53.1
Q ss_pred CCCCChhHHHHHHHHHhC----C--ceechhHHHHHHHhcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCCceEE
Q 040894 1 GPGSGKSTQCSKIAKHLG----F--RHLSAGDLLEAEAESGSNDGKMIREYKKEGKLVPSEIIVKLLQKAMQESQNKNFV 74 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~----~--~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i 74 (169)
+|||||||+|+.|++.++ . .+++.|. ++..+..+..+...-+... .......+...... +..+|
T Consensus 404 lsGSGKSTiA~~La~~L~~~G~~~~~~lD~D~-ir~~l~~~~~f~~~er~~~-------i~ri~~v~~~~~~~--g~~VI 473 (573)
T 1m8p_A 404 YMNSGKDAIARALQVTLNQQGGRSVSLLLGDT-VRHELSSELGFTREDRHTN-------IQRIAFVATELTRA--GAAVI 473 (573)
T ss_dssp STTSSHHHHHHHHHHHHHHHCSSCEEEEEHHH-HHHHTCTTCCCSHHHHHHH-------HHHHHHHHHHHHHT--TCEEE
T ss_pred CCCCCHHHHHHHHHHHhcccCCceEEEECcHH-HHHHhccccCCChhHHHHH-------HHHHHHHHHHHHhC--CCEEE
Confidence 589999999999999976 3 4566554 3333222111111000000 00011233333332 56667
Q ss_pred EeCCCCChHHHHHHHhh-cCCCCCEEEEEEcCHHHHHHHHh
Q 040894 75 IDGFPRNEENLSAAENI-LKIEPNAVLVFDCSEEEMTRRIL 114 (169)
Q Consensus 75 ~d~~~~~~~~~~~~~~~-~~~~~~~~i~l~~~~~~~~~R~~ 114 (169)
++...........+... ....+..+|||++|++++.+|..
T Consensus 474 ~~~is~~~~~R~~~r~l~~~~g~~~~V~Lda~~ev~~~R~~ 514 (573)
T 1m8p_A 474 AAPIAPYEESRKFARDAVSQAGSFFLVHVATPLEHCEQSDK 514 (573)
T ss_dssp EECCCCCHHHHHHHHHHHHTTSEEEEEEECCCHHHHHHHCS
T ss_pred EEcCCCcHHHHHHHHHHHHhcCCeEEEEEeCCHHHHHHHhc
Confidence 76432222222222210 11014589999999999999963
No 97
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.02 E-value=1.3e-09 Score=72.69 Aligned_cols=29 Identities=31% Similarity=0.496 Sum_probs=24.9
Q ss_pred CCCCChhHHHHHHHHHhC--CceechhHHHH
Q 040894 1 GPGSGKSTQCSKIAKHLG--FRHLSAGDLLE 29 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~--~~~i~~d~~~~ 29 (169)
|+||||||+++.|+..++ +.+++.|.++.
T Consensus 14 ~~GsGKSTl~~~l~~~~~~~i~~v~~d~~~~ 44 (211)
T 3asz_A 14 GTASGKTTLAQALARTLGERVALLPMDHYYK 44 (211)
T ss_dssp STTSSHHHHHHHHHHHHGGGEEEEEGGGCBC
T ss_pred CCCCCHHHHHHHHHHHhCCCeEEEecCcccc
Confidence 689999999999999888 88888776543
No 98
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=99.00 E-value=1.2e-10 Score=81.42 Aligned_cols=29 Identities=14% Similarity=0.184 Sum_probs=23.3
Q ss_pred CCCCChhHHHHHHHHHhC-----CceechhHHHH
Q 040894 1 GPGSGKSTQCSKIAKHLG-----FRHLSAGDLLE 29 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~-----~~~i~~d~~~~ 29 (169)
|+||||||+++.|++.++ +.+++.|++++
T Consensus 13 ~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~~r 46 (290)
T 1a7j_A 13 SSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFHR 46 (290)
T ss_dssp CC---CCTHHHHHHHHHHHHTCCEEEEEGGGGBS
T ss_pred CCCCCHHHHHHHHHHHHhhcCCCeeEeecchhhc
Confidence 789999999999999887 78999999875
No 99
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=98.97 E-value=2.8e-09 Score=80.07 Aligned_cols=137 Identities=14% Similarity=0.204 Sum_probs=72.5
Q ss_pred CCCCChhHHHHHHHHHhCC-----ceechhHHHHHHHhcCCcchHHHHHHHHc-CCCC---CHHHH---HHHHHHHHHcC
Q 040894 1 GPGSGKSTQCSKIAKHLGF-----RHLSAGDLLEAEAESGSNDGKMIREYKKE-GKLV---PSEII---VKLLQKAMQES 68 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~-----~~i~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~~~~---~~~l~~~~~~~ 68 (169)
+|||||||+|+.|++.+++ .+++.|++.+........ . .++.. +... ..... ...+...+...
T Consensus 43 lpGSGKSTia~~La~~L~~~~~d~~v~s~D~~r~~~~~~~~~-~----~~f~~~~~~~~~~re~~~~~~l~~~~~~L~~~ 117 (520)
T 2axn_A 43 LPARGKTYISKKLTRYLNWIGVPTKVFNVGEYRREAVKQYSS-Y----NFFRPDNEEAMKVRKQCALAALRDVKSYLAKE 117 (520)
T ss_dssp CTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHSCCCC-G----GGGCTTCHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHHHHhhcCCCeEEecccHHHHHhccCCcc-c----cccCcccHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5999999999999998853 347778866655322110 0 11100 0000 00111 11222333223
Q ss_pred CCceEEEeCCCCChHHHHHHHhh--cCCCCCEEEEEEcC-HHHHHHHHhcCCCCCCC----Cc---HHHHHHHHHHHhhc
Q 040894 69 QNKNFVIDGFPRNEENLSAAENI--LKIEPNAVLVFDCS-EEEMTRRILSRNQGRVD----DK---IDTIKKRLNVYSES 138 (169)
Q Consensus 69 ~~~~~i~d~~~~~~~~~~~~~~~--~~~~~~~~i~l~~~-~~~~~~R~~~R~~~~~~----~~---~~~~~~~~~~~~~~ 138 (169)
.+..+|+|+..........+... ......++|++.++ ++++.+|+..|...++. +. .+.+.+++..|...
T Consensus 118 ~g~~VIvDat~~~~~~R~~~~~~a~~~g~~v~~l~~~~~d~e~i~~ri~~r~~~rPdl~~~d~e~~~~~~~~Ri~~y~~~ 197 (520)
T 2axn_A 118 GGQIAVFDATNTTRERRHMILHFAKENDFKAFFIESVCDDPTVVASNIMEVKISSPDYKDCNSAEAMDDFMKRISCYEAS 197 (520)
T ss_dssp CCCEEEEESCCCSHHHHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHHHHHTTTSGGGTTSCHHHHHHHHHHHHHHHHTT
T ss_pred CCceEEecCCCCCHHHHHHHHHHHHHcCCeEEEEEEeCChHHHHHHHHHhhhhcCCccccCCHHHHHHHHHHHHHhhhhh
Confidence 37789999987776665554331 11222345566666 78888888665222221 12 23445666777666
Q ss_pred hhhH
Q 040894 139 TLPV 142 (169)
Q Consensus 139 ~~~~ 142 (169)
..+.
T Consensus 198 Yepi 201 (520)
T 2axn_A 198 YQPL 201 (520)
T ss_dssp CCCC
T ss_pred hccc
Confidence 5544
No 100
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=98.96 E-value=4.3e-10 Score=74.97 Aligned_cols=92 Identities=9% Similarity=0.216 Sum_probs=47.1
Q ss_pred HHHHHHHHcCCCceEEEeCCCCChHHHHHHHhhcCCCCCEEEEEEcC-HHHHHHHHhcCCCCCCCCcHHHHHHHHHHHhh
Q 040894 59 KLLQKAMQESQNKNFVIDGFPRNEENLSAAENILKIEPNAVLVFDCS-EEEMTRRILSRNQGRVDDKIDTIKKRLNVYSE 137 (169)
Q Consensus 59 ~~l~~~~~~~~~~~~i~d~~~~~~~~~~~~~~~~~~~~~~~i~l~~~-~~~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~ 137 (169)
..+...+.. +..+|+|..+.. ...+.. ....+ .+||+..| .+++.+|+.+| +. +..+.+.+++.....
T Consensus 90 ~~i~~~l~~--g~~vild~~~~g---~~~~~~-~~~~~-~~i~i~~ps~~~l~~Rl~~R--~~--~~~e~i~~Rl~~~~~ 158 (208)
T 3tau_A 90 EYVEEKLAA--GVDIFLEIEVQG---AMQVRK-AMPEG-IFIFLTPPDLSELKNRIIGR--GT--ESMEVVEERMETAKK 158 (208)
T ss_dssp HHHHHHHHT--TCCEEEECCHHH---HHHHHH-HCTTS-EEEEEECTTTTTSSCC-----------CCHHHHHHHHHHHH
T ss_pred HHHHHHHHc--CCeEEEEeeHHH---HHHHHH-hCCCe-EEEEEeCCCHHHHHHHHHhc--CC--CCHHHHHHHHHHHHH
Confidence 334555555 778888864322 223333 33333 55666654 89999999988 43 233556666654443
Q ss_pred chhhHHHHhhhcCcEEEEeCCCChHHHHHhh
Q 040894 138 STLPVINYYSSKGKVRKIDAGRPIEEVFDEI 168 (169)
Q Consensus 138 ~~~~~~~~~~~~~~~~~id~~~~~~~v~~~i 168 (169)
.. . +....+++++++ +.++++++|
T Consensus 159 e~----~-~~~~~d~vivN~--~~~~~~~~l 182 (208)
T 3tau_A 159 EI----E-MMASYDYAVVND--VVANAVQKI 182 (208)
T ss_dssp HH----H-HGGGSSEEEECS--SHHHHHHHH
T ss_pred HH----H-hhccCCEEEECc--CHHHHHHHH
Confidence 21 1 222345555543 588888765
No 101
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=98.95 E-value=1e-09 Score=75.29 Aligned_cols=113 Identities=13% Similarity=0.113 Sum_probs=59.8
Q ss_pred CCCCChhHHHHHHHHHhCCceechhHHHHHH-HhcC--CcchHH---HHHHHHcC-C----CCCHHHHHHHHHHHHHc-C
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHLSAGDLLEAE-AESG--SNDGKM---IREYKKEG-K----LVPSEIIVKLLQKAMQE-S 68 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i~~d~~~~~~-~~~~--~~~~~~---~~~~~~~~-~----~~~~~~~~~~l~~~~~~-~ 68 (169)
||||||||+|+.||+++++.+++.|++.... ..-+ ...... +...+... . ..............+.. .
T Consensus 9 ~~GSGKSTla~~La~~~~~~~i~~D~~~~~~~~~~~t~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~i~~~~ 88 (253)
T 2ze6_A 9 PTCSGKTDMAIQIAQETGWPVVALDRVQCCPQIATGSGRPLESELQSTRRIYLDSRPLTEGILDAESAHRRLIFEVDWRK 88 (253)
T ss_dssp CTTSSHHHHHHHHHHHHCCCEEECCSGGGCGGGTTTTTCCCGGGGTTCCEECSCCCCGGGCSCCHHHHHHHHHHHHHTTT
T ss_pred CCCcCHHHHHHHHHhcCCCeEEeccHHhccCCCccccCCCCHHHHhCCCeEEEeeeccccccccHHHHHHHHHHHHHHHh
Confidence 7999999999999999999999998864211 0000 000000 00000000 0 12222223333333321 1
Q ss_pred CCceEEEeCCCCChHHHHHHHhhc----CCCCCEEEEEEcCH-HHHHHHHhcC
Q 040894 69 QNKNFVIDGFPRNEENLSAAENIL----KIEPNAVLVFDCSE-EEMTRRILSR 116 (169)
Q Consensus 69 ~~~~~i~d~~~~~~~~~~~~~~~~----~~~~~~~i~l~~~~-~~~~~R~~~R 116 (169)
.+..+|+++-. ......+.. . ......+|||++|. +++.+|+.+|
T Consensus 89 ~g~~vIl~gg~--~~~~~~~~~-~~~~~~~~~~~~i~l~~~~~e~l~~Rl~~R 138 (253)
T 2ze6_A 89 SEEGLILEGGS--ISLLNCMAK-SPFWRSGFQWHVKRLRLGDSDAFLTRAKQR 138 (253)
T ss_dssp TSSEEEEEECC--HHHHHHHHH-CTTTTSSCEEEEEECCCCCHHHHHHHHHHH
T ss_pred CCCCeEEeccH--HHHHHHHHh-cccccccCceEEEEecchhHHHHHHHHHHH
Confidence 25666765421 122222332 1 11123799999997 9999999988
No 102
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=98.94 E-value=4.6e-09 Score=68.80 Aligned_cols=104 Identities=17% Similarity=0.123 Sum_probs=55.7
Q ss_pred CCCCChhHHHHHHHHHhCC-ceechhHHHHHHHhcCCcchHHHHHHHHcCCCCCHHHHHHHH----HHHHHcCCCceEEE
Q 040894 1 GPGSGKSTQCSKIAKHLGF-RHLSAGDLLEAEAESGSNDGKMIREYKKEGKLVPSEIIVKLL----QKAMQESQNKNFVI 75 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~-~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l----~~~~~~~~~~~~i~ 75 (169)
||||||||+++.|+...+. .+++.+++.... ..+..... . ...+.....+.+ ...... +..+|+
T Consensus 10 ~~GaGKSTl~~~L~~~~~g~~~i~~d~~~~~~-~~~~~~~~-~-------~~~~~~~~~~~l~~~~~~~~~~--~~~~il 78 (189)
T 2bdt_A 10 PAGVGKSTTCKRLAAQLDNSAYIEGDIINHMV-VGGYRPPW-E-------SDELLALTWKNITDLTVNFLLA--QNDVVL 78 (189)
T ss_dssp STTSSHHHHHHHHHHHSSSEEEEEHHHHHTTC-CTTCCCGG-G-------CHHHHHHHHHHHHHHHHHHHHT--TCEEEE
T ss_pred CCCCcHHHHHHHHhcccCCeEEEcccchhhhh-ccccccCc-c-------chhHHHHHHHHHHHHHHHHHhc--CCcEEE
Confidence 7999999999999987765 678876664321 11100000 0 000000111122 222222 556888
Q ss_pred eCCCCChHHHHHHHhh---cC-CCCCEEEEEEcCHHHHHHHHhcC
Q 040894 76 DGFPRNEENLSAAENI---LK-IEPNAVLVFDCSEEEMTRRILSR 116 (169)
Q Consensus 76 d~~~~~~~~~~~~~~~---~~-~~~~~~i~l~~~~~~~~~R~~~R 116 (169)
|++ ........+... .. .....+++|.+|++++.+|...|
T Consensus 79 d~~-~~~~~~~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r 122 (189)
T 2bdt_A 79 DYI-AFPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALR 122 (189)
T ss_dssp ESC-CCHHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTS
T ss_pred eec-cCHHHHHHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhc
Confidence 885 222222222220 12 11345788999999999999887
No 103
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.91 E-value=7.1e-10 Score=73.59 Aligned_cols=90 Identities=14% Similarity=0.219 Sum_probs=32.1
Q ss_pred HHHHHHHcCCCceEEEeCCCCChHHHHHHHhhcCCCCC-EEEEEE-cCHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHhh
Q 040894 60 LLQKAMQESQNKNFVIDGFPRNEENLSAAENILKIEPN-AVLVFD-CSEEEMTRRILSRNQGRVDDKIDTIKKRLNVYSE 137 (169)
Q Consensus 60 ~l~~~~~~~~~~~~i~d~~~~~~~~~~~~~~~~~~~~~-~~i~l~-~~~~~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~ 137 (169)
.+...+.. +..+|+|+...... .+.. .. ++ .++++. ++++++.+|+..| +. ...+.+.+++..+..
T Consensus 89 ~i~~~l~~--g~~vv~d~~~~~~~---~~~~-~~--~~~~~i~~~~~~~~~~~~Rl~~R--~~--~~~~~~~~rl~~~~~ 156 (207)
T 2j41_A 89 YVKDTMDE--GHDVFLEIEVEGAK---QVRK-KF--PDALFIFLAPPSLEHLRERLVGR--GT--ESDEKIQSRINEARK 156 (207)
T ss_dssp HHHHHHHT--TCEEEEECCGGGHH---HHHH-HC--TTSEEEEEECCC-------------------------------C
T ss_pred HHHHHHHc--CCeEEEEECHHHHH---HHHH-hc--CCeEEEEEECCCHHHHHHHHHhc--CC--CCHHHHHHHHHHHHH
Confidence 34444544 67888898533222 2222 22 24 444444 5688999999887 32 222344444444433
Q ss_pred chhhHHHHhhhcCcEEEEeCCCChHHHHHhh
Q 040894 138 STLPVINYYSSKGKVRKIDAGRPIEEVFDEI 168 (169)
Q Consensus 138 ~~~~~~~~~~~~~~~~~id~~~~~~~v~~~i 168 (169)
... .+ ...+++ ++++ +++++.++|
T Consensus 157 ~~~----~~-~~~d~v-I~n~-~~e~~~~~i 180 (207)
T 2j41_A 157 EVE----MM-NLYDYV-VVND-EVELAKNRI 180 (207)
T ss_dssp GGG----GG-GGCSEE-EECS-SHHHHHHHH
T ss_pred HHh----cc-ccCCEE-EECC-CHHHHHHHH
Confidence 221 12 233554 4455 899998876
No 104
>1e2k_A Thymidine kinase; transferase, antiviral drug, enzyme-prodrug gene therapy, sugar ring pucker; HET: TMC; 1.7A {Herpes simplex virus} SCOP: c.37.1.1 PDB: 1e2i_A* 1e2h_A* 1e2m_A* 1e2n_A* 1e2p_A* 1ki2_A* 1ki3_A* 1ki4_A* 1ki6_B* 1ki7_A* 1ki8_A* 3rdp_A* 2ki5_A* 1kim_A* 1qhi_A* 1p7c_A* 1vtk_A* 2vtk_A* 3vtk_A* 3f0t_A* ...
Probab=98.88 E-value=2.6e-08 Score=70.47 Aligned_cols=44 Identities=14% Similarity=0.219 Sum_probs=30.8
Q ss_pred CCCCEEEEEEcCHHHHHHHHhcCCCCCCCC--cHHHHHHHHHHHhhch
Q 040894 94 IEPNAVLVFDCSEEEMTRRILSRNQGRVDD--KIDTIKKRLNVYSEST 139 (169)
Q Consensus 94 ~~~~~~i~l~~~~~~~~~R~~~R~~~~~~~--~~~~~~~~~~~~~~~~ 139 (169)
.++|+++++++|++++++|+.+| +++.+ ..+++++....|....
T Consensus 153 ~ppdlt~lldl~pe~~l~RI~~R--gr~~Eri~~~yl~rvr~~Y~~l~ 198 (331)
T 1e2k_A 153 LPGTNIVLGALPEDRHIDRLAKR--QRPGERLDLAMLAAIRRVYGLLA 198 (331)
T ss_dssp CTTCEEEEEECCHHHHHHHHHHS--CCTTCCCCHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCHHHHHHHHHhc--CCCcccCCHHHHHHHHHHHHHHH
Confidence 45689999999999999999888 54322 3455555555565543
No 105
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=98.87 E-value=1.7e-08 Score=68.90 Aligned_cols=87 Identities=16% Similarity=0.215 Sum_probs=45.5
Q ss_pred CceEEEeCCCCChHHHHHHHhhcCCCCCEEEEEEcCHHHHHHHHhcCC--CCCCCCcHHHHHHHHHHHhhchhhHHHHh-
Q 040894 70 NKNFVIDGFPRNEENLSAAENILKIEPNAVLVFDCSEEEMTRRILSRN--QGRVDDKIDTIKKRLNVYSESTLPVINYY- 146 (169)
Q Consensus 70 ~~~~i~d~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 146 (169)
...+|+|+. ...... .+.. ..+..|++.++.+....|...|. .|+ ..+.+.+ .+.....+..+.+
T Consensus 134 ~~~lilDg~-~~~~~~-~l~~----~~~~~i~v~th~~~~~~r~~~r~~~~G~---~~e~~~~---~~~~~~~~~~~~~i 201 (245)
T 2jeo_A 134 ADVVLFEGI-LVFYSQ-EIRD----MFHLRLFVDTDSDVRLSRRVLRDVRRGR---DLEQILT---QYTTFVKPAFEEFC 201 (245)
T ss_dssp CSEEEEECT-TTTTSH-HHHT----TCSEEEEEECCHHHHHHHHHHHHTC------CHHHHHH---HHHHTHHHHHHHHT
T ss_pred CCEEEEeCc-cccccH-HHHH----hcCeEEEEECCHHHHHHHHHHHHHHcCC---CHHHHHH---HHHHhhhHhHHHhC
Confidence 346777873 222111 1222 25899999999988887766551 122 3333332 2332222222221
Q ss_pred ---hhcCcEEE---EeCCCChHHHHHhh
Q 040894 147 ---SSKGKVRK---IDAGRPIEEVFDEI 168 (169)
Q Consensus 147 ---~~~~~~~~---id~~~~~~~v~~~i 168 (169)
...+++++ +|++.+++++.++|
T Consensus 202 ~p~~~~aD~vi~~~~dn~~~~~~l~~~i 229 (245)
T 2jeo_A 202 LPTKKYADVIIPRGVDNMVAINLIVQHI 229 (245)
T ss_dssp GGGGGGCSEEEESSTTCHHHHHHHHHHH
T ss_pred CcchhcceEEEcCCCCccHHHHHHHHHH
Confidence 23345544 37778888888776
No 106
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=98.86 E-value=1.4e-08 Score=66.54 Aligned_cols=147 Identities=20% Similarity=0.278 Sum_probs=71.7
Q ss_pred CCCCChhHHHHHHHHHhCCc--eechhHHHHHHHhcCCcchHHHHHHHHcCCCCCHHHHHHHHHH---HHHcCCCceEEE
Q 040894 1 GPGSGKSTQCSKIAKHLGFR--HLSAGDLLEAEAESGSNDGKMIREYKKEGKLVPSEIIVKLLQK---AMQESQNKNFVI 75 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~--~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~~~~~~i~ 75 (169)
||||||||+++.|+..++.. +++.+++.... ..+...+...... .+.....+.+.. .... .+..+++
T Consensus 17 ~~GsGKSTl~~~La~~~~~g~i~i~~d~~~~~~-~~~~~~~~~~~~~------~~~~~v~~~l~~~~~~~~~-~~~~~~~ 88 (191)
T 1zp6_A 17 HPGSGKSTIAEALANLPGVPKVHFHSDDLWGYI-KHGRIDPWLPQSH------QQNRMIMQIAADVAGRYAK-EGYFVIL 88 (191)
T ss_dssp CTTSCHHHHHHHHHTCSSSCEEEECTTHHHHTC-CSSCCCTTSSSHH------HHHHHHHHHHHHHHHHHHH-TSCEEEE
T ss_pred CCCCCHHHHHHHHHhccCCCeEEEcccchhhhh-hcccccCCccchh------hhhHHHHHHHHHHHHHHhc-cCCeEEE
Confidence 79999999999999876544 67776665431 1111000000000 000111111111 1111 2455777
Q ss_pred eCCCCChHHHHHHHhhcCCCCCEEEEEEcCHHHHHHHHhcCCCCCCC-CcHHHHHHHHHHHhhchhhHHHHhhhcCcEEE
Q 040894 76 DGFPRNEENLSAAENILKIEPNAVLVFDCSEEEMTRRILSRNQGRVD-DKIDTIKKRLNVYSESTLPVINYYSSKGKVRK 154 (169)
Q Consensus 76 d~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (169)
|+..... ....+.. . ..+...+++.++.+++..|+..| +.+. ...+.....+..+..... + +.+++
T Consensus 89 ~~~~~~~-~l~~~~~-~-~~~~~~ls~~~~~~v~~~R~~~r--~~~~lld~~~~~~~~~~~~~l~~-----~---~~~~i 155 (191)
T 1zp6_A 89 DGVVRPD-WLPAFTA-L-ARPLHYIVLRTTAAEAIERCLDR--GGDSLSDPLVVADLHSQFADLGA-----F---EHHVL 155 (191)
T ss_dssp CSCCCTT-TTHHHHT-T-CSCEEEEEEECCHHHHHHHHHTT--CTTSCCCHHHHHHHHHHTTCCGG-----G---GGGEE
T ss_pred eccCcHH-HHHHHHh-c-CCCeEEEEecCCHHHHHHHHHhc--CCCccCCHHHHHHHHHHHhccCc-----c---cccEE
Confidence 8753321 1222221 1 12336899999999999999987 3221 123333322232222111 1 12333
Q ss_pred EeCCCChHHHHHhh
Q 040894 155 IDAGRPIEEVFDEI 168 (169)
Q Consensus 155 id~~~~~~~v~~~i 168 (169)
.+++.++++++++|
T Consensus 156 ~t~~~~~~~~~~~i 169 (191)
T 1zp6_A 156 PVSGKDTDQALQSA 169 (191)
T ss_dssp ECTTCCTTTTTTTT
T ss_pred ECCCCCHHHHHHHH
Confidence 34457888888765
No 107
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=98.85 E-value=6.1e-09 Score=68.96 Aligned_cols=40 Identities=18% Similarity=0.155 Sum_probs=17.8
Q ss_pred CceEEEeCCCCChHHHHHHHhhcCCCCCEEEEEEcCHHHHHHHHhcC
Q 040894 70 NKNFVIDGFPRNEENLSAAENILKIEPNAVLVFDCSEEEMTRRILSR 116 (169)
Q Consensus 70 ~~~~i~d~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R 116 (169)
+..+|+||...... .+. ..+|.+||+++|++++.+|+..|
T Consensus 125 ~~~vIveg~~l~~~---~~~----~~~d~~i~v~~~~~~~~~R~~~R 164 (201)
T 1rz3_A 125 SDMIMIEGVFLQRK---EWR----PFFDFVVYLDCPREIRFARENDQ 164 (201)
T ss_dssp CSEEEEEETTTTST---TTG----GGCSEEEEECCC-----------
T ss_pred CcEEEEechhhccH---HHH----hhcCEEEEEeCCHHHHHHHHhcC
Confidence 45678888422111 111 23789999999999999999988
No 108
>1of1_A Thymidine kinase; transferase, antiviral drug, enzyme- prodrug gene, DNA synthesis, ATP-binding; HET: SCT; 1.95A {Herpes simplex virus} SCOP: c.37.1.1
Probab=98.85 E-value=5e-08 Score=70.01 Aligned_cols=44 Identities=14% Similarity=0.219 Sum_probs=30.8
Q ss_pred CCCCEEEEEEcCHHHHHHHHhcCCCCCCCC--cHHHHHHHHHHHhhch
Q 040894 94 IEPNAVLVFDCSEEEMTRRILSRNQGRVDD--KIDTIKKRLNVYSEST 139 (169)
Q Consensus 94 ~~~~~~i~l~~~~~~~~~R~~~R~~~~~~~--~~~~~~~~~~~~~~~~ 139 (169)
.++|+++++++|++++++|+.+| ++..+ ..+++.+....|....
T Consensus 198 ~ppdlt~Lldl~pe~~l~RI~~R--gR~~Eri~leyl~rVr~~Y~~la 243 (376)
T 1of1_A 198 LPGTNIVLGALPEDRHIDRLAKR--QRPGERLDLAMLAAIRRVYGLLA 243 (376)
T ss_dssp CTTCEEEEEECCHHHHHHHHHHS--CCTTCCCCHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEecCCHHHHHHHHHhc--CCCcccCCHHHHHHHHHHHHHHH
Confidence 35678888999999999999888 54322 3455665556666543
No 109
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.81 E-value=2e-09 Score=70.45 Aligned_cols=94 Identities=14% Similarity=0.257 Sum_probs=32.9
Q ss_pred HHHHHHHHcCCCceEEEeCCCCChHHHHHHHhhcCCCCCEEEEEEcCH-HHHHHHHhcCCCCCCCCcHHHHHHHHHHHhh
Q 040894 59 KLLQKAMQESQNKNFVIDGFPRNEENLSAAENILKIEPNAVLVFDCSE-EEMTRRILSRNQGRVDDKIDTIKKRLNVYSE 137 (169)
Q Consensus 59 ~~l~~~~~~~~~~~~i~d~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~-~~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~ 137 (169)
..+...+.. +..+|+|..+ .....+.. .......+||+.+|. +++.+|+..| ++. ..+.+.+++.....
T Consensus 83 ~~i~~~l~~--g~~~il~~~~---~g~~~l~~-~~~~~~~~i~i~~p~~~~l~~Rl~~R--g~~--~~~~i~~rl~~~~~ 152 (186)
T 3a00_A 83 ASVKQVSKS--GKTCILDIDM---QGVKSVKA-IPELNARFLFIAPPSVEDLKKRLEGR--GTE--TEESINKRLSAAQA 152 (186)
T ss_dssp HHHHHHHHT--TCEEEEECCH---HHHHHHHT-CGGGCCEEEEEECSCC-------------------------------
T ss_pred HHHHHHHHc--CCeEEEEEcH---HHHHHHHH-hcCCCeEEEEEECcCHHHHHHHHHhc--CCC--CHHHHHHHHHHHHH
Confidence 345555554 6778887432 22222221 012234678999866 9999999988 432 22344444443332
Q ss_pred chhhHHHHh-hhcCcEEEEeCCCChHHHHHhh
Q 040894 138 STLPVINYY-SSKGKVRKIDAGRPIEEVFDEI 168 (169)
Q Consensus 138 ~~~~~~~~~-~~~~~~~~id~~~~~~~v~~~i 168 (169)
.. +.. ....+++++ ++ +.++++++|
T Consensus 153 ~~----~~~~~~~~d~vi~-nd-~~~~a~~~l 178 (186)
T 3a00_A 153 EL----AYAETGAHDKVIV-ND-DLDKAYKEL 178 (186)
T ss_dssp ----------CCCCSEEEE-CS-SHHHHHHHH
T ss_pred HH----HhhcccCCcEEEE-Cc-CHHHHHHHH
Confidence 21 111 123354444 44 788877765
No 110
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=98.80 E-value=2.5e-08 Score=75.29 Aligned_cols=29 Identities=28% Similarity=0.251 Sum_probs=22.9
Q ss_pred CCCCChhHHHHHHHHHhC------CceechhHHHH
Q 040894 1 GPGSGKSTQCSKIAKHLG------FRHLSAGDLLE 29 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~------~~~i~~d~~~~ 29 (169)
++||||||+++.|+..++ +.+++.|++..
T Consensus 377 ~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~~~ 411 (552)
T 3cr8_A 377 LSGAGKSTLARALAARLMEMGGRCVTLLDGDIVRR 411 (552)
T ss_dssp SSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHHHH
T ss_pred CCCChHHHHHHHHHHhhcccCCceEEEECCcHHHH
Confidence 689999999999999884 33577766643
No 111
>1osn_A Thymidine kinase, VZV-TK; chickenpox, BVDU-MP, transferase; HET: BVP ADP; 3.20A {Human herpesvirus 3} SCOP: c.37.1.1
Probab=98.78 E-value=3.3e-08 Score=70.16 Aligned_cols=45 Identities=18% Similarity=0.150 Sum_probs=27.9
Q ss_pred CCCCCEEEEEEcCHHHHHHHHhcCCCCCCCCc--HHHHHHHHHHHhhch
Q 040894 93 KIEPNAVLVFDCSEEEMTRRILSRNQGRVDDK--IDTIKKRLNVYSEST 139 (169)
Q Consensus 93 ~~~~~~~i~l~~~~~~~~~R~~~R~~~~~~~~--~~~~~~~~~~~~~~~ 139 (169)
...||.+|||++|+++..+|+.+| +|+.+. .+++.+..+.|....
T Consensus 164 ~~~PDltI~Ld~~pe~~l~RI~~R--gR~~Erie~~yl~rvr~~Y~~l~ 210 (341)
T 1osn_A 164 EPPGTNLVVCTVSLPSHLSRVSKR--ARPGETVNLPFVMVLRNVYIMLI 210 (341)
T ss_dssp CCSCCEEEEEECCHHHHHHHCC--------CCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEeCCHHHHHHHHHhh--CCCcccCCHHHHHHHHHHHHHHH
Confidence 346999999999999999999877 443222 345554445555443
No 112
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=98.71 E-value=2e-07 Score=61.32 Aligned_cols=148 Identities=11% Similarity=0.075 Sum_probs=79.2
Q ss_pred CCCCChhHHHHHHHHHhC---CceechhHHHHHHHh-c-CCcchHHHHHHHHcCCCCCHHHHH---HHH---------HH
Q 040894 1 GPGSGKSTQCSKIAKHLG---FRHLSAGDLLEAEAE-S-GSNDGKMIREYKKEGKLVPSEIIV---KLL---------QK 63 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~---~~~i~~d~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~---~~l---------~~ 63 (169)
.|||||+|+|+.|.+.+| +.++.+++.+++... . |......+..- ...+ ..+..+. +.+ ..
T Consensus 19 k~~SGKd~va~~l~~~~g~~~~~vv~msD~iK~~~a~~~gl~~~~~l~~~-~ykE-~~R~~m~~~g~~~R~~d~~~~~~~ 96 (202)
T 3ch4_B 19 KRKSGKDFVTEALQSRLGADVCAVLRLSGPLKEQYAQEHGLNFQRLLDTS-TYKE-AFRKDMIRWGEEKRQADPGFFCRK 96 (202)
T ss_dssp CTTSSHHHHHHHHHHHHCTTTEEEECTHHHHHHHHHHTTTCCCC--------CCS-SHHHHHHHHHHHHHHHCTTTTHHH
T ss_pred CCCCChHHHHHHHHHHcCCCCceEEEccHHHHHHHHHHcCCCchhhcchh-hhHH-HHHHHHHHHHHHHHhcCchHHHHH
Confidence 489999999999998885 678999999985322 1 21111111000 0000 0011111 001 11
Q ss_pred HHHcCCCceEEEeCCCCChHHHHHHHhhcCCCCCEEEEEEcCHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHhhchhhHH
Q 040894 64 AMQESQNKNFVIDGFPRNEENLSAAENILKIEPNAVLVFDCSEEEMTRRILSRNQGRVDDKIDTIKKRLNVYSESTLPVI 143 (169)
Q Consensus 64 ~~~~~~~~~~i~d~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (169)
.+.......+|++|. +...+.+.+.. ..+..-.+|.+.+++++..+|...+..+.. +... + + -+
T Consensus 97 ~~~~~~~~~vII~dv-R~~~Ev~~fr~-~~g~~~~iirI~as~~~R~~Rg~~~~~~~D-d~es--E-----~------gL 160 (202)
T 3ch4_B 97 IVEGISQPIWLVSDT-RRVSDIQWFRE-AYGAVTQTVRVVALEQSRQQRGWVFTPGVD-DAES--E-----C------GL 160 (202)
T ss_dssp HSBTCCCSEEEECCC-CSHHHHHHHHH-HHGGGEEEEEEEECHHHHHHTTCCCCTTTT-TSHH--H-----H------TT
T ss_pred HHHhcCCCcEEEeCC-CCHHHHHHHHH-hCCCcEEEEEEECCHHHHHHHhhhcccccc-cccc--c-----c------CC
Confidence 111112457888886 66666666665 333335689999999999999654411221 2211 1 0 00
Q ss_pred HHhhhcCcEEEEeCCCChHHHHHhh
Q 040894 144 NYYSSKGKVRKIDAGRPIEEVFDEI 168 (169)
Q Consensus 144 ~~~~~~~~~~~id~~~~~~~v~~~i 168 (169)
..+ ...+ ++|+|+.+.+++.++|
T Consensus 161 ~~~-~~~D-~vI~Ndgt~eel~~~v 183 (202)
T 3ch4_B 161 DNF-GDFD-WVIENHGVEQRLEEQL 183 (202)
T ss_dssp TTC-CCCS-EEEEECSCHHHHHHHH
T ss_pred CCC-CcCC-EEEEeCCCHHHHHHHH
Confidence 111 1223 5777778999887765
No 113
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=98.69 E-value=2e-08 Score=66.78 Aligned_cols=44 Identities=11% Similarity=0.144 Sum_probs=28.5
Q ss_pred ceEEEeCCCCChHHHHHHHhhcCCCCCEEEEEEcCHHHHHHHHhcC
Q 040894 71 KNFVIDGFPRNEENLSAAENILKIEPNAVLVFDCSEEEMTRRILSR 116 (169)
Q Consensus 71 ~~~i~d~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R 116 (169)
..+|+||........ .|.. .....|.+||+++|.+++.+|+.+|
T Consensus 125 ~~~i~eg~~~l~de~-~~~~-l~~~~d~~i~vd~~~~~~~~R~~~R 168 (208)
T 3c8u_A 125 RVAIIEGNYLLFDAP-GWRD-LTAIWDVSIRLEVPMADLEARLVQR 168 (208)
T ss_dssp CEEEEEESSTTBCST-TGGG-GGGTCSEEEEECCCHHHHHHHHHHH
T ss_pred cEEEECCceeccCCc-hhHH-HHHhcCEEEEEeCCHHHHHHHHHHH
Confidence 567778732212111 1111 2235789999999999999999887
No 114
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=98.68 E-value=6e-07 Score=66.82 Aligned_cols=111 Identities=14% Similarity=0.140 Sum_probs=59.8
Q ss_pred CCCCChhHHHHHHHHHhC-----CceechhHHHHHHHhcCCcchHHHHHHHHcCCC---C-CHHHH---HHHHHHHHHcC
Q 040894 1 GPGSGKSTQCSKIAKHLG-----FRHLSAGDLLEAEAESGSNDGKMIREYKKEGKL---V-PSEII---VKLLQKAMQES 68 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~-----~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~---~~~l~~~~~~~ 68 (169)
+|||||||+++.|++.++ ...++.|++........... .++..... . ..... ...+...+...
T Consensus 47 lpGsGKSTia~~La~~l~~~~~~t~~~~~d~~r~~~~g~~~~~-----~ifd~~g~~~~r~re~~~~~~l~~~~~~l~~~ 121 (469)
T 1bif_A 47 LPARGKTYISKKLTRYLNFIGVPTREFNVGQYRRDMVKTYKSF-----EFFLPDNEEGLKIRKQCALAALNDVRKFLSEE 121 (469)
T ss_dssp CTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHCSCCCG-----GGGCTTCHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHHHhccCCCceEEecchhhhhhccCCCcc-----cccCCCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 589999999999999875 34566666554432110000 00000000 0 00011 11224445444
Q ss_pred CCceEEEeCCCCChHHHHHHHhhcCCCCCEEEEEE---cCHHHHHHHHhcC
Q 040894 69 QNKNFVIDGFPRNEENLSAAENILKIEPNAVLVFD---CSEEEMTRRILSR 116 (169)
Q Consensus 69 ~~~~~i~d~~~~~~~~~~~~~~~~~~~~~~~i~l~---~~~~~~~~R~~~R 116 (169)
.+..+|+|...........|..........++||+ .+++.+.+|+..+
T Consensus 122 ~G~~vV~D~tn~~~~~R~~~~~~~~~~~~~vv~l~~~~~~~~~i~~r~~~~ 172 (469)
T 1bif_A 122 GGHVAVFDATNTTRERRAMIFNFGEQNGYKTFFVESICVDPEVIAANIVQV 172 (469)
T ss_dssp CCSEEEEESCCCSHHHHHHHHHHHHHHTCEEEEEEECCCCHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCHHHHHHHHHHHHhcCCcEEEEEEECCCHHHHHHHHHHh
Confidence 47789999877777665555331000122467777 6688888888754
No 115
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=98.63 E-value=4.5e-09 Score=74.38 Aligned_cols=27 Identities=22% Similarity=0.464 Sum_probs=25.3
Q ss_pred CCCCChhHHHHHHHHHhCCceechhHH
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHLSAGDL 27 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i~~d~~ 27 (169)
|+|||||||+..||++++..+|+.|.+
T Consensus 48 PTgsGKTtLa~~LA~~l~~eiIs~Ds~ 74 (339)
T 3a8t_A 48 ATGTGKSRLSIDLAAHFPLEVINSDKM 74 (339)
T ss_dssp STTSSHHHHHHHHHTTSCEEEEECCSS
T ss_pred CCCCCHHHHHHHHHHHCCCcEEccccc
Confidence 789999999999999999999998876
No 116
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.61 E-value=3.1e-07 Score=61.99 Aligned_cols=60 Identities=23% Similarity=0.287 Sum_probs=25.4
Q ss_pred EEEEEEcCHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHhhchhhHHHHhhhcCcEEEEeCCCChHHHHHhh
Q 040894 98 AVLVFDCSEEEMTRRILSRNQGRVDDKIDTIKKRLNVYSESTLPVINYYSSKGKVRKIDAGRPIEEVFDEI 168 (169)
Q Consensus 98 ~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~v~~~i 168 (169)
.++...++.+++.+|+.+| +. +..+.+.+++....... + +....+++++ ++ +++++.++|
T Consensus 143 ~v~v~~~~~~~l~~Rl~~R--~~--~~~~~i~~rl~~~~~~~----~-~~~~~d~vI~-n~-~~e~~~~~l 202 (231)
T 3lnc_A 143 SIFIMPPSMEELRRRLCGR--RA--DDSEVVEARLKGAAFEI----S-HCEAYDYVIV-NE-DIEETADRI 202 (231)
T ss_dssp EEEEECSCHHHHHHC------------------CHHHHHHHH----T-TGGGSSEEEE-CS-SHHHHHHHH
T ss_pred EEEEECCcHHHHHHHHHHc--CC--CCHHHHHHHHHHHHHHH----h-hhcCCeEEEE-Cc-CHHHHHHHH
Confidence 3444566899999999887 32 22233443333322211 1 1123455544 44 688888765
No 117
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=98.61 E-value=1.5e-08 Score=71.55 Aligned_cols=22 Identities=14% Similarity=0.176 Sum_probs=20.6
Q ss_pred CCCEEEEEEcCHHHHHHHHhcC
Q 040894 95 EPNAVLVFDCSEEEMTRRILSR 116 (169)
Q Consensus 95 ~~~~~i~l~~~~~~~~~R~~~R 116 (169)
..|.+||+++|.+++.+|+..|
T Consensus 226 ~~D~~I~Vda~~d~~~~R~i~R 247 (321)
T 3tqc_A 226 FFDFSLFVDAQAQVIQKWYIDR 247 (321)
T ss_dssp GCSEEEEEECCHHHHHHHHHHH
T ss_pred hcCeEEEEECCHHHHHHHHHHh
Confidence 4789999999999999999988
No 118
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=98.59 E-value=1.3e-07 Score=66.64 Aligned_cols=22 Identities=14% Similarity=0.196 Sum_probs=20.2
Q ss_pred CCCEEEEEEcCHHHHHHHHhcC
Q 040894 95 EPNAVLVFDCSEEEMTRRILSR 116 (169)
Q Consensus 95 ~~~~~i~l~~~~~~~~~R~~~R 116 (169)
.+|.+||+++|.+++.+|+..|
T Consensus 214 ~~D~~i~V~~~~~~~~~R~~~R 235 (308)
T 1sq5_A 214 FVDFSIYVDAPEDLLQTWYINR 235 (308)
T ss_dssp GCSEEEEEECCHHHHHHHHHHH
T ss_pred hCCEEEEEECCHHHHHHHHHHH
Confidence 4789999999999999999887
No 119
>3czq_A Putative polyphosphate kinase 2; structural genomics, APC6299, PSI-2, structure initiative; HET: MSE GOL; 2.23A {Sinorhizobium meliloti}
Probab=98.52 E-value=4.8e-08 Score=68.01 Aligned_cols=69 Identities=10% Similarity=-0.003 Sum_probs=40.6
Q ss_pred CCCCCEEEEEEcCHHHHHHHHhcC-CCCCC--CCcHHHHH--HHHHHHhhchhhHHHHhh-hcCcEEEEeCCCCh
Q 040894 93 KIEPNAVLVFDCSEEEMTRRILSR-NQGRV--DDKIDTIK--KRLNVYSESTLPVINYYS-SKGKVRKIDAGRPI 161 (169)
Q Consensus 93 ~~~~~~~i~l~~~~~~~~~R~~~R-~~~~~--~~~~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~id~~~~~ 161 (169)
.+.|++.|||++|+++..+|+..| ..... .-+...++ +.+..|.+.....+..-. ..++|++|+++.+.
T Consensus 188 ~G~~~lKf~L~Is~eeq~kR~~~R~~dp~k~Wk~s~~D~~~~~~~~~y~~a~~~ml~~T~t~~apW~vIda~dk~ 262 (304)
T 3czq_A 188 EGIHLFKFWINIGREMQLKRFHDRRHDPLKIWKLSPMDIAALSKWDDYTGKRDRMLKETHTEHGPWAVIRGNDKR 262 (304)
T ss_dssp HTCEEEEEEEECCHHHHHHHHHHHHHCTTTGGGCCHHHHHGGGGHHHHHHHHHHHHHHHCCSSSCEEEEECSSHH
T ss_pred CCCeeEEEEEECCHHHHHHHHHHhhcCcccccCCCHHHHHHHHHHHHHHHHHHHHHHhhccCCCCEEEEECCCcc
Confidence 457999999999999999999876 11110 01111221 223444444433333222 34589999998754
No 120
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=98.34 E-value=4.3e-05 Score=51.12 Aligned_cols=92 Identities=12% Similarity=0.234 Sum_probs=50.8
Q ss_pred HHHHHHHcCCCceEEEeCCCCChHHHHHHHhhcCCCCCEEEEEEcCHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHhhch
Q 040894 60 LLQKAMQESQNKNFVIDGFPRNEENLSAAENILKIEPNAVLVFDCSEEEMTRRILSRNQGRVDDKIDTIKKRLNVYSEST 139 (169)
Q Consensus 60 ~l~~~~~~~~~~~~i~d~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~~~ 139 (169)
.+...+.. +..+|+| ........+.. .......+|+..-+.+.+.+|+..| | .++.+.+.+++.......
T Consensus 100 ~v~~~l~~--G~illLD---LD~~~~~~i~~-~l~~~~tI~i~th~~~~l~~Rl~~r--G--~~~~e~i~~rl~~a~~e~ 169 (219)
T 1s96_A 100 AIEQVLAT--GVDVFLD---IDWQGAQQIRQ-KMPHARSIFILPPSKIELDRRLRGR--G--QDSEEVIAKRMAQAVAEM 169 (219)
T ss_dssp HHHHHHTT--TCEEEEE---CCHHHHHHHHH-HCTTCEEEEEECSSHHHHHHHHHTT--S--CSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhc--CCeEEEE---ECHHHHHHHHH-HccCCEEEEEECCCHHHHHHHHHHc--C--CCCHHHHHHHHHHHHHHH
Confidence 34555554 7888999 33344444444 3333334455555789999999877 4 345666776665433211
Q ss_pred hhHHHHhhhcCcEEEEeCCCChHHHHHhh
Q 040894 140 LPVINYYSSKGKVRKIDAGRPIEEVFDEI 168 (169)
Q Consensus 140 ~~~~~~~~~~~~~~~id~~~~~~~v~~~i 168 (169)
. +....+.++++ .+.++.++++
T Consensus 170 ----~-~~~~~d~~i~N--d~l~~a~~~l 191 (219)
T 1s96_A 170 ----S-HYAEYDYLIVN--DDFDTALTDL 191 (219)
T ss_dssp ----T-TGGGSSEEEEC--SSHHHHHHHH
T ss_pred ----h-hccCCCEEEEC--cCHHHHHHHH
Confidence 1 11233444444 3677776654
No 121
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=98.30 E-value=9.5e-07 Score=57.31 Aligned_cols=18 Identities=11% Similarity=0.174 Sum_probs=16.1
Q ss_pred CCCCChhHHHHHHHHHhC
Q 040894 1 GPGSGKSTQCSKIAKHLG 18 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~ 18 (169)
|+||||||+++.|+..+.
T Consensus 13 psGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 13 AHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CTTSSHHHHHHHHHHHCT
T ss_pred CCCCCHHHHHHHHHhhCC
Confidence 799999999999998753
No 122
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=98.24 E-value=6.9e-05 Score=48.07 Aligned_cols=118 Identities=20% Similarity=0.109 Sum_probs=59.8
Q ss_pred CCCCChhHHHHHHHHHhCCceechhHHHHHHHhcCCcchHHHHHHHHcCCCCCHHHH----HHHHHHHHHcCCCceEEEe
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHLSAGDLLEAEAESGSNDGKMIREYKKEGKLVPSEII----VKLLQKAMQESQNKNFVID 76 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~l~~~~~~~~~~~~i~d 76 (169)
|+||||||+++.+.. +..+++.|.+ +..+.+... ........ .......+.. +...+++
T Consensus 17 ~nGsGKSTl~~~~~~--~~~~~~~d~~-~g~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~--g~~~~~~ 79 (171)
T 4gp7_A 17 SSGSGKSTFAKKHFK--PTEVISSDFC-RGLMSDDEN------------DQTVTGAAFDVLHYIVSKRLQL--GKLTVVD 79 (171)
T ss_dssp CTTSCHHHHHHHHSC--GGGEEEHHHH-HHHHCSSTT------------CGGGHHHHHHHHHHHHHHHHHT--TCCEEEE
T ss_pred CCCCCHHHHHHHHcc--CCeEEccHHH-HHHhcCccc------------chhhHHHHHHHHHHHHHHHHhC--CCeEEEE
Confidence 799999999998642 4556665443 333332211 01111111 1112222222 5566777
Q ss_pred CCCCChHHHH---HHHhhcCCCCCEEEEEEcCHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHhhc
Q 040894 77 GFPRNEENLS---AAENILKIEPNAVLVFDCSEEEMTRRILSRNQGRVDDKIDTIKKRLNVYSES 138 (169)
Q Consensus 77 ~~~~~~~~~~---~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~~ 138 (169)
.......... .+.. .....-.+++||-|...+-.|...| ....-..+.+......+.+.
T Consensus 80 ~~~~~s~g~~qrv~iAr-al~~~p~~lllDEPt~~Ld~~~~~R--~~~~~~~~vi~~~~~~l~~~ 141 (171)
T 4gp7_A 80 ATNVQESARKPLIEMAK-DYHCFPVAVVFNLPEKVCQERNKNR--TDRQVEEYVIRKHTQQMKKS 141 (171)
T ss_dssp SCCCSHHHHHHHHHHHH-HTTCEEEEEEECCCHHHHHHHHHTC--SSCCCCHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH-HcCCcEEEEEEeCCHHHHHHHHhcc--cCCCCCHHHHHHHHHHhhhh
Confidence 6544332222 2222 3333336888999999999999887 22233334444333444433
No 123
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=98.15 E-value=2.3e-05 Score=51.53 Aligned_cols=18 Identities=17% Similarity=0.220 Sum_probs=16.4
Q ss_pred CCCCChhHHHHHHHHHhC
Q 040894 1 GPGSGKSTQCSKIAKHLG 18 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~ 18 (169)
|+|||||||++.|.+.+.
T Consensus 27 PSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 27 ASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CTTSSHHHHHHHHHHHCT
T ss_pred cCCCCHHHHHHHHHhhCC
Confidence 899999999999998764
No 124
>3czp_A Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2, structural protein structure initiative, midwest center for structural genomics; HET: MSE; 2.00A {Pseudomonas aeruginosa PAO1}
Probab=98.12 E-value=3.2e-06 Score=63.06 Aligned_cols=66 Identities=9% Similarity=-0.019 Sum_probs=37.1
Q ss_pred cCCCCCEEEEEEcCHHHHHHHHhcCCC---C----CCCCcHHHHHHHHHHHhhchhhHHHHhh-hcCcEEEEeCCC
Q 040894 92 LKIEPNAVLVFDCSEEEMTRRILSRNQ---G----RVDDKIDTIKKRLNVYSESTLPVINYYS-SKGKVRKIDAGR 159 (169)
Q Consensus 92 ~~~~~~~~i~l~~~~~~~~~R~~~R~~---~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~id~~~ 159 (169)
..+.+++.|||++|.++..+|+..|.. . .+.+.. -.+.+..|.......+..-. ..++|++|+++.
T Consensus 144 ~~g~~i~KffL~is~eeq~kRl~~R~~~p~k~Wk~s~~D~~--~~~~~~~Y~~a~e~~l~~T~t~~APW~vI~a~d 217 (500)
T 3czp_A 144 DEGALLFKFWFHLSKKQLKERLKALEKDPQHSWKLSPLDWK--QSEVYDRFVHYGERVLRRTSRDYAPWYVVEGAD 217 (500)
T ss_dssp HTTCEEEEEEEECCHHHHHHCC-------------CSSCTT--SHHHHHHHHHHHHHHHHHHCBTTBCEEEEECSC
T ss_pred cCCCeEEEEEEECCHHHHHHHHHHHhcCCcccCCCCHHHHH--HHHhHHHHHHHHHHHHHhhcCCCCCEEEEECCC
Confidence 557788999999999999999998811 0 111111 11233444444333333222 234899999986
No 125
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=98.08 E-value=1.1e-05 Score=56.84 Aligned_cols=22 Identities=23% Similarity=0.217 Sum_probs=19.4
Q ss_pred CCCEEEEEEcCHHHHHHHHhcC
Q 040894 95 EPNAVLVFDCSEEEMTRRILSR 116 (169)
Q Consensus 95 ~~~~~i~l~~~~~~~~~R~~~R 116 (169)
..|..||++++.+++.+|+..|
T Consensus 217 ~~D~~I~V~a~~~~~~~R~i~R 238 (312)
T 3aez_A 217 LFDFSLYVDARIEDIEQWYVSR 238 (312)
T ss_dssp GCSEEEEEEECHHHHHHHHHHH
T ss_pred hcCcEEEEECCHHHHHHHHHHH
Confidence 4789999999999999988776
No 126
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=98.06 E-value=4.8e-05 Score=50.03 Aligned_cols=63 Identities=11% Similarity=0.164 Sum_probs=33.1
Q ss_pred EEEEEEc-CHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHhhchhhHHHHhhhcCcEEEEeCCCChHHHHHhh
Q 040894 98 AVLVFDC-SEEEMTRRILSRNQGRVDDKIDTIKKRLNVYSESTLPVINYYSSKGKVRKIDAGRPIEEVFDEI 168 (169)
Q Consensus 98 ~~i~l~~-~~~~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~v~~~i 168 (169)
.++||+. +...+.+|+..| +. ++.+.+.+++.......... +.....+.++++ + +.++.+++|
T Consensus 118 ~~~~l~~p~~~ilde~~~~~--d~--~~e~~i~~~l~~~~~~~~~a--~~~~~~D~iivn-d-~le~a~~~l 181 (198)
T 1lvg_A 118 IYIFVQPPSLDVLEQRLRLR--NT--ETEESLAKRLAAARTDMESS--KEPGLFDLVIIN-D-DLDKAYATL 181 (198)
T ss_dssp EEEEEECSCHHHHHHHHHHH--TC--SCHHHHHHHHHHHHHHTTGG--GSTTTCSEEEEC-S-SHHHHHHHH
T ss_pred EEEEEeCCCHHHHHHHHHhc--CC--CCHHHHHHHHHHHHHHHHHh--hccCCceEEEEC-C-CHHHHHHHH
Confidence 3355554 577888898877 32 45566666665543321100 011233444443 3 577777765
No 127
>3czp_A Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2, structural protein structure initiative, midwest center for structural genomics; HET: MSE; 2.00A {Pseudomonas aeruginosa PAO1}
Probab=98.03 E-value=6.2e-06 Score=61.53 Aligned_cols=66 Identities=9% Similarity=0.027 Sum_probs=40.3
Q ss_pred cCCCCCEEEEEEcCHHHHHHHHhcC-C--CC----CCCCcHHHHHHHHHHHhhchhhHHHHhh-hcCcEEEEeCCC
Q 040894 92 LKIEPNAVLVFDCSEEEMTRRILSR-N--QG----RVDDKIDTIKKRLNVYSESTLPVINYYS-SKGKVRKIDAGR 159 (169)
Q Consensus 92 ~~~~~~~~i~l~~~~~~~~~R~~~R-~--~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~id~~~ 159 (169)
..+.+++.|||++|.++..+|+..| . .. .+.+.. -.+.+..|.......+..-. ..++|++|+++.
T Consensus 401 ~~g~~i~Kf~L~is~eeQ~~R~~~R~~~p~k~Wk~s~~D~~--~~~~w~~y~~a~~~~l~~T~t~~APW~vI~a~d 474 (500)
T 3czp_A 401 EYGIIVVKFWLAIDKQTQMERFKEREKTPYKRYKITEEDWR--NRDKWDQYVDAVGDMVDRTSTEIAPWTLVEAND 474 (500)
T ss_dssp HHTEEEEEEEEECCHHHHHHHHHHHHHSSCTTSCCCSSTTT--GGGGHHHHHHHHHHHHHHHCCSSSCEEEEECSS
T ss_pred hCCCeEEEEEEECCHHHHHHHHHHHhcCCcccCCCCHHHHH--HHHhHHHHHHHHHHHHHHhccCCCCEEEEECCC
Confidence 4456889999999999999999988 1 11 111111 11223344444444433333 335899999986
No 128
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=97.99 E-value=1.5e-06 Score=61.28 Aligned_cols=27 Identities=19% Similarity=0.224 Sum_probs=25.1
Q ss_pred CCCCChhHHHHHHHHHhCCceechhHH
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHLSAGDL 27 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i~~d~~ 27 (169)
|+||||||++..||++++..+++.|.+
T Consensus 13 ptGsGKTtla~~La~~l~~~iis~Ds~ 39 (323)
T 3crm_A 13 PTAAGKTDLAMALADALPCELISVDSA 39 (323)
T ss_dssp CTTSCHHHHHHHHHHHSCEEEEEECTT
T ss_pred CCCCCHHHHHHHHHHHcCCcEEeccch
Confidence 799999999999999999999998765
No 129
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=97.94 E-value=1.8e-06 Score=61.27 Aligned_cols=27 Identities=22% Similarity=0.297 Sum_probs=25.4
Q ss_pred CCCCChhHHHHHHHHHhCCceechhHH
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHLSAGDL 27 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i~~d~~ 27 (169)
|+||||||+|..|++.++..+++.|++
T Consensus 15 ptgSGKTtla~~La~~l~~~iis~Ds~ 41 (340)
T 3d3q_A 15 PTASGKTELSIEVAKKFNGEIISGDSM 41 (340)
T ss_dssp STTSSHHHHHHHHHHHTTEEEEECCSS
T ss_pred CCcCcHHHHHHHHHHHcCCceeccccc
Confidence 799999999999999999999999886
No 130
>3rhf_A Putative polyphosphate kinase 2 family protein; PSI-biology, MCSG, structural genomics, midwest center for S genomics; HET: PGE FLC PG4; 2.45A {Arthrobacter aurescens}
Probab=97.80 E-value=9.5e-06 Score=55.92 Aligned_cols=137 Identities=10% Similarity=0.089 Sum_probs=74.6
Q ss_pred CCCChhHHHHHHHHHhCCceechhHHHHHHHhcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC--CceEEEeCCC
Q 040894 2 PGSGKSTQCSKIAKHLGFRHLSAGDLLEAEAESGSNDGKMIREYKKEGKLVPSEIIVKLLQKAMQESQ--NKNFVIDGFP 79 (169)
Q Consensus 2 ~GsGKsTla~~La~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~i~d~~~ 79 (169)
.||||+++.+.|.+.++-.++.+-.+- .+ ...+.....+.+.....+ |...|+|++.
T Consensus 84 DaAGKgg~Ik~l~~~ldPRg~~V~a~~------~P---------------t~eE~~~~ylwR~~~~lP~~G~I~IFdRSw 142 (289)
T 3rhf_A 84 DTAGKGGIVSHVVGAMDPQGVQLTAFK------AP---------------TDEEKSHDFLWRIEKQVPAAGMVGVFDRSQ 142 (289)
T ss_dssp TTSSHHHHHHHHHHHSCGGGEEEEECC------SC---------------CHHHHTSCTTHHHHTTCCCTTCEEEEESCG
T ss_pred CCCChHHHHHHHHHhcCcCceEEEECC------CC---------------ChhhhcCCHHHHHHHhCCCCCeEEEEeCch
Confidence 699999999999999964433321010 00 001111222333444433 7788889851
Q ss_pred C------------Ch----------HHHHHHHhhcCCCCCEEEEEEcCHHHHHHHHhcC-CCCCC--CCcHH--HHHHHH
Q 040894 80 R------------NE----------ENLSAAENILKIEPNAVLVFDCSEEEMTRRILSR-NQGRV--DDKID--TIKKRL 132 (169)
Q Consensus 80 ~------------~~----------~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R-~~~~~--~~~~~--~~~~~~ 132 (169)
. .. ..++.+.. ..+...+-+||.+|.++..+|+..| ..... .-+.. .-.+.+
T Consensus 143 Y~~vlverV~g~~~~~~~~~~~~~I~~FE~~L~-~~G~~ilKf~LhIskeEQ~kR~~~R~~dP~k~WK~s~~D~~~r~~w 221 (289)
T 3rhf_A 143 YEDVLIHRVHGWADAAELERRYAAINDFESRLT-EQGTTIVKVMLNISKDEQKKRLIARLDDPSKHWKYSRGDLAERAYW 221 (289)
T ss_dssp GGGGTHHHHTTSSCHHHHHHHHHHHHHHHHHHH-HTTEEEEEEEEECCHHHHHHHHHHHHHCGGGGGGCCHHHHHHHTTH
T ss_pred hhhHhHHHHhcCCCHHHHHHHHHHHHHHHHHHH-hCCCEEEEEEEECCHHHHHHHHHHHhcCCcccccCCHHHHHHHHHH
Confidence 1 10 11111111 3455667899999999999999987 11110 01111 222335
Q ss_pred HHHhhchhhHHHHhh-hcCcEEEEeCCCC
Q 040894 133 NVYSESTLPVINYYS-SKGKVRKIDAGRP 160 (169)
Q Consensus 133 ~~~~~~~~~~~~~~~-~~~~~~~id~~~~ 160 (169)
..|.......+..-. ..++|++|+++..
T Consensus 222 d~Y~~a~e~ml~~T~t~~APW~VV~addK 250 (289)
T 3rhf_A 222 DDYMDAYSVAFEKTSTEIAPWHVVPANKK 250 (289)
T ss_dssp HHHHHHHHHHHHHHCCSSSCEEEEECSSH
T ss_pred HHHHHHHHHHHHHhCCCCCCeEEEeCCCH
Confidence 666665555544433 3468999998753
No 131
>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*
Probab=97.71 E-value=2.4e-05 Score=53.06 Aligned_cols=32 Identities=16% Similarity=0.095 Sum_probs=27.9
Q ss_pred CCCCChhHHHHHHHHHhCCceechhHHHHHHH
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHLSAGDLLEAEA 32 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i~~d~~~~~~~ 32 (169)
++||||||+++.|++++|++++..++.++..+
T Consensus 9 ~~~sGK~tv~~~l~~~~g~~~~~~~~~~~~~~ 40 (241)
T 1dek_A 9 VKRSGKDTTADFIMSNYSAVKYQLAGPIKDAL 40 (241)
T ss_dssp CTTSSHHHHHHHHHHHSCEEECCTTHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhcCCeEEecChHHHHHH
Confidence 58999999999999989999999888776653
No 132
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=97.71 E-value=8.6e-06 Score=57.17 Aligned_cols=27 Identities=22% Similarity=0.281 Sum_probs=24.8
Q ss_pred CCCCChhHHHHHHHHHhCCceechhHH
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHLSAGDL 27 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i~~d~~ 27 (169)
|+||||||++..||+.++..+++.|.+
T Consensus 11 ptgsGKt~la~~La~~~~~~iis~Ds~ 37 (322)
T 3exa_A 11 PTAVGKTKTSVMLAKRLNGEVISGDSM 37 (322)
T ss_dssp CTTSCHHHHHHHHHHTTTEEEEECCGG
T ss_pred CCcCCHHHHHHHHHHhCccceeecCcc
Confidence 899999999999999999888888865
No 133
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=97.68 E-value=1.4e-05 Score=55.94 Aligned_cols=26 Identities=23% Similarity=0.275 Sum_probs=24.1
Q ss_pred CCCCChhHHHHHHHHHhCCceechhH
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHLSAGD 26 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i~~d~ 26 (169)
|+||||||++..||+.++..+++.|.
T Consensus 18 ptgsGKt~la~~La~~~~~~iis~Ds 43 (316)
T 3foz_A 18 PTASGKTALAIELRKILPVELISVDS 43 (316)
T ss_dssp CTTSCHHHHHHHHHHHSCEEEEECCT
T ss_pred CCccCHHHHHHHHHHhCCCcEEeccc
Confidence 79999999999999999988888775
No 134
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=97.62 E-value=2.3e-05 Score=54.75 Aligned_cols=24 Identities=33% Similarity=0.685 Sum_probs=20.9
Q ss_pred CCCCChhHHHHHHHHHhCCceech
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHLSA 24 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i~~ 24 (169)
|||+|||++|+.+|+.++.+++.+
T Consensus 44 ppGtGKT~la~aiA~~l~~~~i~v 67 (293)
T 3t15_A 44 GKGQGKSFQCELVFRKMGINPIMM 67 (293)
T ss_dssp CTTSCHHHHHHHHHHHHTCCCEEE
T ss_pred CCCCCHHHHHHHHHHHhCCCEEEE
Confidence 899999999999999998766543
No 135
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=97.62 E-value=4.2e-06 Score=59.70 Aligned_cols=21 Identities=33% Similarity=0.536 Sum_probs=19.5
Q ss_pred CCCCChhHHHHHHHHHhCCce
Q 040894 1 GPGSGKSTQCSKIAKHLGFRH 21 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~ 21 (169)
||||||||+++.|+..+++.+
T Consensus 32 ~~G~GKTTl~~~la~~l~~~f 52 (359)
T 2ga8_A 32 SPGSGKSTIAEELCQIINEKY 52 (359)
T ss_dssp CTTSSHHHHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHhCCCe
Confidence 699999999999999998776
No 136
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.53 E-value=3.9e-05 Score=56.31 Aligned_cols=24 Identities=21% Similarity=0.367 Sum_probs=21.6
Q ss_pred CCCCChhHHHHHHHHHhCCceech
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHLSA 24 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i~~ 24 (169)
|||+|||++|+.+|..++.+++.+
T Consensus 214 PPGtGKT~lakAiA~~~~~~~~~v 237 (428)
T 4b4t_K 214 PPGTGKTMLVKAVANSTKAAFIRV 237 (428)
T ss_dssp CTTTTHHHHHHHHHHHHTCEEEEE
T ss_pred CCCCCHHHHHHHHHHHhCCCeEEE
Confidence 899999999999999999877654
No 137
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=97.52 E-value=3.7e-05 Score=57.62 Aligned_cols=26 Identities=0% Similarity=-0.042 Sum_probs=22.5
Q ss_pred CCCCChhHHHHHHHHHhCC-------ceechhH
Q 040894 1 GPGSGKSTQCSKIAKHLGF-------RHLSAGD 26 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~-------~~i~~d~ 26 (169)
+|||||||+++.|+++++. .++|.|.
T Consensus 403 lsGsGKSTIa~~La~~L~~~~g~r~~~~lDgD~ 435 (511)
T 1g8f_A 403 SLTVSREQLSIALLSTFLQFGGGRYYKIFEHNN 435 (511)
T ss_dssp TCCSCHHHHHHHHHHHHTTSCSCCCEEECCCTT
T ss_pred cCCCCHHHHHHHHHHHHHHhhcCcceEEecCCC
Confidence 5899999999999999986 5777665
No 138
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=97.51 E-value=3.6e-05 Score=55.88 Aligned_cols=26 Identities=19% Similarity=0.298 Sum_probs=24.3
Q ss_pred CCCCChhHHHHHHHHHhCCceechhH
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHLSAGD 26 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i~~d~ 26 (169)
|+||||||++..|++.++..+++.|.
T Consensus 10 ptgsGKttla~~La~~~~~~iis~Ds 35 (409)
T 3eph_A 10 TTGVGKSQLSIQLAQKFNGEVINSDS 35 (409)
T ss_dssp CSSSSHHHHHHHHHHHHTEEEEECCT
T ss_pred cchhhHHHHHHHHHHHCCCeEeecCc
Confidence 79999999999999999998998876
No 139
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.50 E-value=5e-05 Score=51.88 Aligned_cols=23 Identities=26% Similarity=0.417 Sum_probs=20.1
Q ss_pred CCCCChhHHHHHHHHHhCCceec
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHLS 23 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i~ 23 (169)
|||+||||+++.++..++.+++.
T Consensus 53 ~~GtGKT~la~~la~~~~~~~~~ 75 (257)
T 1lv7_A 53 PPGTGKTLLAKAIAGEAKVPFFT 75 (257)
T ss_dssp CTTSCHHHHHHHHHHHHTCCEEE
T ss_pred cCCCCHHHHHHHHHHHcCCCEEE
Confidence 79999999999999998866544
No 140
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.49 E-value=4.6e-05 Score=55.96 Aligned_cols=24 Identities=25% Similarity=0.333 Sum_probs=21.6
Q ss_pred CCCCChhHHHHHHHHHhCCceech
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHLSA 24 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i~~ 24 (169)
|||+|||++|+.+|..++.+++.+
T Consensus 223 PPGTGKTllAkAiA~e~~~~f~~v 246 (434)
T 4b4t_M 223 PPGTGKTLLARACAAQTNATFLKL 246 (434)
T ss_dssp CTTSSHHHHHHHHHHHHTCEEEEE
T ss_pred cCCCCHHHHHHHHHHHhCCCEEEE
Confidence 899999999999999999877553
No 141
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.48 E-value=4.8e-05 Score=55.24 Aligned_cols=24 Identities=25% Similarity=0.526 Sum_probs=21.7
Q ss_pred CCCCChhHHHHHHHHHhCCceech
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHLSA 24 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i~~ 24 (169)
|||+|||++|+.+|..++.+++.+
T Consensus 190 PPGTGKTllAkAiA~e~~~~f~~v 213 (405)
T 4b4t_J 190 PPGTGKTLLARAVAHHTDCKFIRV 213 (405)
T ss_dssp CSSSSHHHHHHHHHHHHTCEEEEE
T ss_pred CCCCCHHHHHHHHHHhhCCCceEE
Confidence 899999999999999999887653
No 142
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.48 E-value=5e-05 Score=55.82 Aligned_cols=24 Identities=25% Similarity=0.499 Sum_probs=21.6
Q ss_pred CCCCChhHHHHHHHHHhCCceech
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHLSA 24 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i~~ 24 (169)
|||+|||++|+.+|..++++++.+
T Consensus 223 PPGtGKTllAkAiA~e~~~~~~~v 246 (437)
T 4b4t_L 223 PPGTGKTLLAKAVAATIGANFIFS 246 (437)
T ss_dssp CTTSSHHHHHHHHHHHHTCEEEEE
T ss_pred CCCCcHHHHHHHHHHHhCCCEEEE
Confidence 899999999999999999887653
No 143
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.43 E-value=0.00016 Score=46.54 Aligned_cols=30 Identities=27% Similarity=0.379 Sum_probs=22.1
Q ss_pred CCCCChhHHHHHHHHHh----C--CceechhHHHHH
Q 040894 1 GPGSGKSTQCSKIAKHL----G--FRHLSAGDLLEA 30 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~----~--~~~i~~d~~~~~ 30 (169)
||||||||+++.++..+ | ..+++..+++..
T Consensus 46 ~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~~~~~ 81 (180)
T 3ec2_A 46 SPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDLIFR 81 (180)
T ss_dssp SSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHHHHHH
Confidence 79999999999998876 4 335665555543
No 144
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.40 E-value=7e-05 Score=51.83 Aligned_cols=22 Identities=27% Similarity=0.569 Sum_probs=19.1
Q ss_pred CCCCChhHHHHHHHHHhCCcee
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHL 22 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i 22 (169)
||||||||+++.|+..++...+
T Consensus 52 p~GtGKTtLakala~~~~~~~i 73 (274)
T 2x8a_A 52 PPGCGKTLLAKAVANESGLNFI 73 (274)
T ss_dssp STTSCHHHHHHHHHHHTTCEEE
T ss_pred CCCCcHHHHHHHHHHHcCCCEE
Confidence 7999999999999998876543
No 145
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=97.40 E-value=7.8e-05 Score=50.88 Aligned_cols=23 Identities=26% Similarity=0.426 Sum_probs=20.3
Q ss_pred CCCCChhHHHHHHHHHhCCceec
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHLS 23 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i~ 23 (169)
|||+||||+|+.+++.++.+++.
T Consensus 47 ~~GtGKT~la~~la~~~~~~~~~ 69 (262)
T 2qz4_A 47 PPGCGKTLLAKAVATEAQVPFLA 69 (262)
T ss_dssp CTTSSHHHHHHHHHHHHTCCEEE
T ss_pred CCCCCHHHHHHHHHHHhCCCEEE
Confidence 79999999999999999876654
No 146
>1kjw_A Postsynaptic density protein 95; protein-protein interaction, scaffold, neuropeptide; 1.80A {Rattus norvegicus} SCOP: b.34.2.1 c.37.1.1 PDB: 1jxm_A* 1jxo_A
Probab=97.40 E-value=0.00015 Score=50.73 Aligned_cols=92 Identities=11% Similarity=0.193 Sum_probs=49.4
Q ss_pred HHHHHHHHHcCCCceEEEeCCCCChHHHHHHHhhcCCCCCEEEEEEcCHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHhh
Q 040894 58 VKLLQKAMQESQNKNFVIDGFPRNEENLSAAENILKIEPNAVLVFDCSEEEMTRRILSRNQGRVDDKIDTIKKRLNVYSE 137 (169)
Q Consensus 58 ~~~l~~~~~~~~~~~~i~d~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~ 137 (169)
.+.+...+.. +..+|+|..+..+. .+.. ....| ++||+..|.-..++|+.+| + +.+.+.+++.....
T Consensus 184 ~~~V~~~~~~--G~~vildid~~g~~---~l~~-~~~~p-i~IfI~pps~~~L~~L~~R--~----t~~~i~~rl~~a~~ 250 (295)
T 1kjw_A 184 VQSVREVAEQ--GKHCILDVSANAVR---RLQA-AHLHP-IAIFIRPRSLENVLEINKR--I----TEEQARKAFDRATK 250 (295)
T ss_dssp HHHHHHHHHT--TCEEEECCCTTHHH---HHHH-TTCCC-EEEEECCSSHHHHHHHCTT--S----CHHHHHHHHHHHHH
T ss_pred HHHHHHHHhc--CCeEEEEeCHHHHH---HHHh-cccCC-eEEEEECCCHHHHHHHHhc--C----CHHHHHHHHHHHHH
Confidence 4456666665 88899986544332 2322 22345 8999997744444447666 3 23445555554432
Q ss_pred chhhHHHHhhhcCcEEEEeCCCChHHHHHhh
Q 040894 138 STLPVINYYSSKGKVRKIDAGRPIEEVFDEI 168 (169)
Q Consensus 138 ~~~~~~~~~~~~~~~~~id~~~~~~~v~~~i 168 (169)
.. ..+....+.+ |.++ +.++.++++
T Consensus 251 ~e----~~~~~~fd~v-ivNd-~le~a~~~l 275 (295)
T 1kjw_A 251 LE----QEFTECFSAI-VEGD-SFEEIYHKV 275 (295)
T ss_dssp HH----HHHGGGCSEE-ECCS-SHHHHHHHH
T ss_pred HH----HhccccCeEE-EECc-CHHHHHHHH
Confidence 11 1122233444 4444 788887765
No 147
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=97.38 E-value=8.1e-05 Score=53.51 Aligned_cols=24 Identities=29% Similarity=0.354 Sum_probs=21.5
Q ss_pred CCCCChhHHHHHHHHHhCCceech
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHLSA 24 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i~~ 24 (169)
|||+|||++|+.+|+.++.+++..
T Consensus 59 ppGtGKT~la~~ia~~~~~~~~~~ 82 (363)
T 3hws_A 59 PTGSGKTLLAETLARLLDVPFTMA 82 (363)
T ss_dssp CTTSSHHHHHHHHHHHTTCCEEEE
T ss_pred CCCCCHHHHHHHHHHHcCCCEEEe
Confidence 799999999999999999877654
No 148
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.36 E-value=8.4e-05 Score=54.84 Aligned_cols=24 Identities=21% Similarity=0.382 Sum_probs=21.6
Q ss_pred CCCCChhHHHHHHHHHhCCceech
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHLSA 24 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i~~ 24 (169)
|||+|||++|+.+|..++.+++.+
T Consensus 251 PPGTGKTlLAkAiA~e~~~~fi~v 274 (467)
T 4b4t_H 251 PPGTGKTLCARAVANRTDATFIRV 274 (467)
T ss_dssp CTTSSHHHHHHHHHHHHTCEEEEE
T ss_pred CCCCcHHHHHHHHHhccCCCeEEE
Confidence 899999999999999999887653
No 149
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=97.36 E-value=8e-05 Score=51.12 Aligned_cols=23 Identities=26% Similarity=0.410 Sum_probs=20.3
Q ss_pred CCCCChhHHHHHHHHHhCCceec
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHLS 23 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i~ 23 (169)
|||+||||+|+.+++.++.+++.
T Consensus 52 ~~GtGKT~la~~la~~~~~~~~~ 74 (268)
T 2r62_A 52 PPGTGKTLLAKAVAGEAHVPFFS 74 (268)
T ss_dssp SSCSSHHHHHHHHHHHHTCCCCC
T ss_pred CCCCcHHHHHHHHHHHhCCCEEE
Confidence 79999999999999999876554
No 150
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.35 E-value=8.8e-05 Score=51.98 Aligned_cols=29 Identities=31% Similarity=0.432 Sum_probs=23.0
Q ss_pred CCCCChhHHHHHHHHHhCCceech--hHHHH
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHLSA--GDLLE 29 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i~~--d~~~~ 29 (169)
|||+||||+|+.++..++..++.. .++..
T Consensus 57 p~GtGKT~la~ala~~~~~~~i~v~~~~l~~ 87 (301)
T 3cf0_A 57 PPGCGKTLLAKAIANECQANFISIKGPELLT 87 (301)
T ss_dssp SSSSSHHHHHHHHHHHTTCEEEEECHHHHHH
T ss_pred CCCcCHHHHHHHHHHHhCCCEEEEEhHHHHh
Confidence 799999999999999998776543 34443
No 151
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=97.35 E-value=9.1e-05 Score=54.55 Aligned_cols=25 Identities=20% Similarity=0.282 Sum_probs=22.2
Q ss_pred CCCCChhHHHHHHHHHhCCceechh
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHLSAG 25 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i~~d 25 (169)
|||+||||+|+.||+.++.+++..+
T Consensus 58 ppGtGKT~lar~lA~~l~~~~~~v~ 82 (444)
T 1g41_A 58 PTGVGKTEIARRLAKLANAPFIKVE 82 (444)
T ss_dssp CTTSSHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCCCHHHHHHHHHHHcCCCceeec
Confidence 7999999999999999998876654
No 152
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=97.34 E-value=0.00098 Score=42.80 Aligned_cols=17 Identities=29% Similarity=0.620 Sum_probs=15.9
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
|||+||||+++.+++.+
T Consensus 51 ~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 51 EPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp CTTSCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 79999999999999986
No 153
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.34 E-value=8.7e-05 Score=51.71 Aligned_cols=23 Identities=26% Similarity=0.421 Sum_probs=20.3
Q ss_pred CCCCChhHHHHHHHHHhCCceec
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHLS 23 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i~ 23 (169)
|||+||||+|+.+++.++.+++.
T Consensus 62 p~GtGKT~la~~la~~~~~~~~~ 84 (297)
T 3b9p_A 62 PPGNGKTLLARAVATECSATFLN 84 (297)
T ss_dssp SSSSCHHHHHHHHHHHTTCEEEE
T ss_pred cCCCCHHHHHHHHHHHhCCCeEE
Confidence 79999999999999999876544
No 154
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=97.33 E-value=0.00012 Score=50.75 Aligned_cols=23 Identities=22% Similarity=0.404 Sum_probs=20.5
Q ss_pred CCCCChhHHHHHHHHHhCCceec
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHLS 23 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i~ 23 (169)
|||+||||+|+.+++.++.+++.
T Consensus 59 ~~GtGKT~la~~la~~~~~~~~~ 81 (285)
T 3h4m_A 59 PPGTGKTLLAKAVATETNATFIR 81 (285)
T ss_dssp SSSSSHHHHHHHHHHHTTCEEEE
T ss_pred CCCCcHHHHHHHHHHHhCCCEEE
Confidence 79999999999999999877654
No 155
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=97.33 E-value=7.5e-05 Score=48.98 Aligned_cols=25 Identities=20% Similarity=0.308 Sum_probs=21.3
Q ss_pred CCCCChhHHHHHHHHHhCCceechhH
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHLSAGD 26 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i~~d~ 26 (169)
|+||||||+|..|+++.+ .+++.|.
T Consensus 42 psGsGKStLA~~La~~g~-~iIsdDs 66 (205)
T 2qmh_A 42 DSGVGKSETALELVQRGH-RLIADDR 66 (205)
T ss_dssp CCTTTTHHHHHHHHTTTC-EEEESSE
T ss_pred CCCCCHHHHHHHHHHhCC-eEEecch
Confidence 799999999999999876 7777653
No 156
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.33 E-value=9.4e-05 Score=54.10 Aligned_cols=24 Identities=25% Similarity=0.443 Sum_probs=21.7
Q ss_pred CCCCChhHHHHHHHHHhCCceech
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHLSA 24 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i~~ 24 (169)
|||+|||++|+.+|..++.+++.+
T Consensus 224 PPGTGKTlLAkAiA~e~~~~fi~v 247 (437)
T 4b4t_I 224 APGTGKTLLAKAVANQTSATFLRI 247 (437)
T ss_dssp STTTTHHHHHHHHHHHHTCEEEEE
T ss_pred CCCchHHHHHHHHHHHhCCCEEEE
Confidence 899999999999999999887654
No 157
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.31 E-value=0.00013 Score=51.92 Aligned_cols=21 Identities=38% Similarity=0.425 Sum_probs=18.5
Q ss_pred CCCCChhHHHHHHHHHhCCce
Q 040894 1 GPGSGKSTQCSKIAKHLGFRH 21 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~ 21 (169)
|||+||||+++.++..++..+
T Consensus 59 p~G~GKTTLa~~ia~~l~~~~ 79 (334)
T 1in4_A 59 PPGLGKTTLAHIIASELQTNI 79 (334)
T ss_dssp STTSSHHHHHHHHHHHHTCCE
T ss_pred CCCCcHHHHHHHHHHHhCCCE
Confidence 799999999999999987543
No 158
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.30 E-value=0.00011 Score=47.56 Aligned_cols=19 Identities=47% Similarity=0.721 Sum_probs=17.2
Q ss_pred CCCCChhHHHHHHHHHhCC
Q 040894 1 GPGSGKSTQCSKIAKHLGF 19 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~ 19 (169)
|+||||||+++.|+..+++
T Consensus 8 ~nGsGKTTLl~~l~g~l~i 26 (178)
T 1ye8_A 8 EPGVGKTTLVKKIVERLGK 26 (178)
T ss_dssp CTTSSHHHHHHHHHHHHGG
T ss_pred CCCCCHHHHHHHHHHHhCC
Confidence 7999999999999998864
No 159
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=97.27 E-value=0.00016 Score=49.73 Aligned_cols=24 Identities=33% Similarity=0.505 Sum_probs=21.0
Q ss_pred CCCCChhHHHHHHHHHhCCceech
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHLSA 24 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i~~ 24 (169)
|||+||||+|+.+++..+.+++..
T Consensus 72 ~~GtGKT~la~~ia~~~~~~~~~i 95 (272)
T 1d2n_A 72 PPHSGKTALAAKIAEESNFPFIKI 95 (272)
T ss_dssp STTSSHHHHHHHHHHHHTCSEEEE
T ss_pred CCCCcHHHHHHHHHHHhCCCEEEE
Confidence 799999999999999998876543
No 160
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.25 E-value=0.00014 Score=49.47 Aligned_cols=23 Identities=22% Similarity=0.391 Sum_probs=19.5
Q ss_pred CCCCChhHHHHHHHHHhCCceec
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHLS 23 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i~ 23 (169)
||||||||+++.++..++...+.
T Consensus 57 ~~G~GKTtl~~~i~~~~~~~~i~ 79 (254)
T 1ixz_A 57 PPGVGKTHLARAVAGEARVPFIT 79 (254)
T ss_dssp CTTSSHHHHHHHHHHHTTCCEEE
T ss_pred CCCCCHHHHHHHHHHHhCCCEEE
Confidence 79999999999999988755443
No 161
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=97.22 E-value=0.00015 Score=51.33 Aligned_cols=24 Identities=29% Similarity=0.407 Sum_probs=21.1
Q ss_pred CCCCChhHHHHHHHHHhCCceech
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHLSA 24 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i~~ 24 (169)
|||+|||++|+.+++.++..++.+
T Consensus 59 ppGtGKT~la~aia~~~~~~~~~v 82 (322)
T 3eie_A 59 PPGTGKSYLAKAVATEANSTFFSV 82 (322)
T ss_dssp SSSSCHHHHHHHHHHHHTCEEEEE
T ss_pred CCCCcHHHHHHHHHHHHCCCEEEE
Confidence 799999999999999998776543
No 162
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=97.21 E-value=0.00016 Score=52.20 Aligned_cols=23 Identities=35% Similarity=0.443 Sum_probs=20.4
Q ss_pred CCCCChhHHHHHHHHHhCCceec
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHLS 23 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i~ 23 (169)
|||+||||+|+.+++.++.+++.
T Consensus 80 p~GtGKT~la~~la~~l~~~~~~ 102 (376)
T 1um8_A 80 PTGSGKTLMAQTLAKHLDIPIAI 102 (376)
T ss_dssp CTTSSHHHHHHHHHHHTTCCEEE
T ss_pred CCCCCHHHHHHHHHHHhCCCEEE
Confidence 79999999999999999876654
No 163
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.20 E-value=0.00017 Score=50.31 Aligned_cols=23 Identities=22% Similarity=0.316 Sum_probs=20.0
Q ss_pred CCCCChhHHHHHHHHHhCCceec
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHLS 23 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i~ 23 (169)
|||+|||++|+.+++.++.+++.
T Consensus 58 ~~GtGKT~la~~la~~l~~~~~~ 80 (310)
T 1ofh_A 58 PTGVGKTEIARRLAKLANAPFIK 80 (310)
T ss_dssp CTTSSHHHHHHHHHHHHTCCEEE
T ss_pred CCCCCHHHHHHHHHHHhCCCEEE
Confidence 79999999999999999876543
No 164
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=97.13 E-value=0.00021 Score=51.31 Aligned_cols=24 Identities=29% Similarity=0.407 Sum_probs=21.2
Q ss_pred CCCCChhHHHHHHHHHhCCceech
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHLSA 24 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i~~ 24 (169)
|||+|||++|+.+++.++.+++.+
T Consensus 92 ppGtGKT~la~ala~~~~~~~~~v 115 (355)
T 2qp9_X 92 PPGTGKSYLAKAVATEANSTFFSV 115 (355)
T ss_dssp STTSCHHHHHHHHHHHHTCEEEEE
T ss_pred CCCCcHHHHHHHHHHHhCCCEEEe
Confidence 799999999999999999876543
No 165
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=97.12 E-value=0.00023 Score=49.17 Aligned_cols=23 Identities=22% Similarity=0.391 Sum_probs=19.5
Q ss_pred CCCCChhHHHHHHHHHhCCceec
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHLS 23 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i~ 23 (169)
||||||||+++.++..++...+.
T Consensus 81 p~GtGKTtl~~~i~~~~~~~~i~ 103 (278)
T 1iy2_A 81 PPGVGKTHLARAVAGEARVPFIT 103 (278)
T ss_dssp CTTSSHHHHHHHHHHHTTCCEEE
T ss_pred CCcChHHHHHHHHHHHcCCCEEE
Confidence 79999999999999988755544
No 166
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=97.08 E-value=0.00024 Score=50.32 Aligned_cols=22 Identities=27% Similarity=0.409 Sum_probs=19.0
Q ss_pred CCCCChhHHHHHHHHHh-CCcee
Q 040894 1 GPGSGKSTQCSKIAKHL-GFRHL 22 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~-~~~~i 22 (169)
|||+|||++|+.+++.+ +..++
T Consensus 53 ppGtGKT~la~ala~~~~~~~~~ 75 (322)
T 1xwi_A 53 PPGTGKSYLAKAVATEANNSTFF 75 (322)
T ss_dssp SSSSCHHHHHHHHHHHTTSCEEE
T ss_pred CCCccHHHHHHHHHHHcCCCcEE
Confidence 79999999999999988 65544
No 167
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=97.07 E-value=0.00027 Score=52.43 Aligned_cols=23 Identities=35% Similarity=0.570 Sum_probs=20.1
Q ss_pred CCCCChhHHHHHHHHHhC--Cceec
Q 040894 1 GPGSGKSTQCSKIAKHLG--FRHLS 23 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~--~~~i~ 23 (169)
|||+|||++|+.+|+.++ .+++.
T Consensus 71 ppGtGKT~la~ala~~l~~~~~~~~ 95 (456)
T 2c9o_A 71 PPGTGKTALALAIAQELGSKVPFCP 95 (456)
T ss_dssp CTTSSHHHHHHHHHHHHCTTSCEEE
T ss_pred CCcCCHHHHHHHHHHHhCCCceEEE
Confidence 899999999999999998 55544
No 168
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=97.06 E-value=0.00027 Score=49.32 Aligned_cols=29 Identities=34% Similarity=0.283 Sum_probs=22.4
Q ss_pred CCCCChhHHHHHHHHHhC-------Ccee-chhHHHH
Q 040894 1 GPGSGKSTQCSKIAKHLG-------FRHL-SAGDLLE 29 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~-------~~~i-~~d~~~~ 29 (169)
|+||||||+++.|+..++ ...+ +.|+++.
T Consensus 39 ~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f~~ 75 (290)
T 1odf_A 39 PQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFYL 75 (290)
T ss_dssp CTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGGBC
T ss_pred CCCCCHHHHHHHHHHHhhhcCCCCceEEEeccccccC
Confidence 689999999999998874 3345 7776553
No 169
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=97.06 E-value=0.00021 Score=45.88 Aligned_cols=17 Identities=29% Similarity=0.567 Sum_probs=15.9
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
|||+||||+++.+++.+
T Consensus 51 ~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 51 DPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp CGGGCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 78999999999999987
No 170
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=97.03 E-value=0.00029 Score=50.59 Aligned_cols=23 Identities=35% Similarity=0.455 Sum_probs=20.3
Q ss_pred CCCCChhHHHHHHHHHhCCceec
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHLS 23 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i~ 23 (169)
|||+||||+|+.+++.++.+++.
T Consensus 125 ppGtGKT~la~aia~~~~~~~~~ 147 (357)
T 3d8b_A 125 PPGTGKTLIGKCIASQSGATFFS 147 (357)
T ss_dssp STTSSHHHHHHHHHHHTTCEEEE
T ss_pred CCCCCHHHHHHHHHHHcCCeEEE
Confidence 79999999999999999876644
No 171
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.98 E-value=0.00033 Score=52.78 Aligned_cols=24 Identities=38% Similarity=0.656 Sum_probs=21.2
Q ss_pred CCCCChhHHHHHHHHHhCCceech
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHLSA 24 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i~~ 24 (169)
|||+||||+|+.+++.+++.++..
T Consensus 85 ppGtGKTtla~~la~~l~~~~i~i 108 (516)
T 1sxj_A 85 PPGIGKTTAAHLVAQELGYDILEQ 108 (516)
T ss_dssp STTSSHHHHHHHHHHHTTCEEEEE
T ss_pred CCCCCHHHHHHHHHHHcCCCEEEE
Confidence 799999999999999999876543
No 172
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=96.98 E-value=0.0003 Score=46.47 Aligned_cols=18 Identities=22% Similarity=0.252 Sum_probs=16.0
Q ss_pred CCCCChhHHHHHHHHHhC
Q 040894 1 GPGSGKSTQCSKIAKHLG 18 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~ 18 (169)
|+||||||+++.|+..+.
T Consensus 28 pnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 28 PSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp STTSSHHHHHHHHHHHST
T ss_pred CCCCCHHHHHHHHHhhCC
Confidence 799999999999988763
No 173
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=96.97 E-value=0.00034 Score=46.17 Aligned_cols=23 Identities=17% Similarity=0.068 Sum_probs=19.3
Q ss_pred CCCCChhHHHHHHHHHhCCceec
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHLS 23 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i~ 23 (169)
|||+||||+|..|++.++-.+++
T Consensus 66 PPGtGKTt~a~ala~~l~g~i~~ 88 (212)
T 1tue_A 66 PANTGKSYFGMSFIHFIQGAVIS 88 (212)
T ss_dssp CGGGCHHHHHHHHHHHHTCEECC
T ss_pred CCCCCHHHHHHHHHHHhCCCeee
Confidence 89999999999999988654443
No 174
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=96.96 E-value=0.00034 Score=46.62 Aligned_cols=17 Identities=29% Similarity=0.442 Sum_probs=15.6
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
|+||||||+++.|+..+
T Consensus 31 psGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 31 PSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp STTSSHHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHhhC
Confidence 79999999999998866
No 175
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=96.96 E-value=0.00048 Score=49.79 Aligned_cols=24 Identities=17% Similarity=0.181 Sum_probs=21.8
Q ss_pred CCCCCEEEEEEcCHHHHHHHHhcC
Q 040894 93 KIEPNAVLVFDCSEEEMTRRILSR 116 (169)
Q Consensus 93 ~~~~~~~i~l~~~~~~~~~R~~~R 116 (169)
...|+++|||++|++++.+|+.+|
T Consensus 298 ~~~pDLliyLd~~~~~l~~RL~~R 321 (377)
T 1svm_A 298 RPKDYLKHCLERSEFLLEKRIIQS 321 (377)
T ss_dssp CCCHHHHHHHHTCTHHHHTTCTTC
T ss_pred CCCCCeEEEEeCCHHHHHHHHHHc
Confidence 456899999999999999999988
No 176
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=96.94 E-value=0.00051 Score=51.17 Aligned_cols=24 Identities=21% Similarity=0.369 Sum_probs=21.0
Q ss_pred CCCCChhHHHHHHHHHhCCceech
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHLSA 24 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i~~ 24 (169)
|||+||||+++.++...+.+++..
T Consensus 57 ppGtGKT~Laraia~~~~~~f~~i 80 (476)
T 2ce7_A 57 PPGTGKTLLARAVAGEANVPFFHI 80 (476)
T ss_dssp CTTSSHHHHHHHHHHHHTCCEEEE
T ss_pred CCCCCHHHHHHHHHHHcCCCeeeC
Confidence 799999999999999998876543
No 177
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=96.93 E-value=0.00052 Score=48.67 Aligned_cols=23 Identities=22% Similarity=0.241 Sum_probs=20.3
Q ss_pred CCCCChhHHHHHHHHHhCCceec
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHLS 23 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i~ 23 (169)
|||+||||+|+.+++.++.+++.
T Consensus 63 ~~GtGKT~la~~ia~~~~~~~~~ 85 (338)
T 3pfi_A 63 PAGLGKTTLANIISYEMSANIKT 85 (338)
T ss_dssp STTSSHHHHHHHHHHHTTCCEEE
T ss_pred cCCCCHHHHHHHHHHHhCCCeEE
Confidence 79999999999999999876654
No 178
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.93 E-value=0.00036 Score=43.73 Aligned_cols=17 Identities=24% Similarity=0.251 Sum_probs=15.8
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
|+||||||+++.++..+
T Consensus 44 ~~G~GKTtL~~~i~~~~ 60 (149)
T 2kjq_A 44 EEGAGKSHLLQAWVAQA 60 (149)
T ss_dssp SSTTTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 79999999999999876
No 179
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=96.90 E-value=0.00043 Score=50.21 Aligned_cols=23 Identities=22% Similarity=0.391 Sum_probs=20.6
Q ss_pred CCCCChhHHHHHHHHHhCCceec
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHLS 23 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i~ 23 (169)
|||+|||++|+.+++.++.+++.
T Consensus 156 ppGtGKT~la~aia~~~~~~~~~ 178 (389)
T 3vfd_A 156 PPGNGKTMLAKAVAAESNATFFN 178 (389)
T ss_dssp STTSCHHHHHHHHHHHTTCEEEE
T ss_pred CCCCCHHHHHHHHHHhhcCcEEE
Confidence 79999999999999999877654
No 180
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.88 E-value=0.00047 Score=46.14 Aligned_cols=18 Identities=11% Similarity=0.076 Sum_probs=16.3
Q ss_pred CCCCChhHHHHHHHHHhC
Q 040894 1 GPGSGKSTQCSKIAKHLG 18 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~ 18 (169)
|||+||||+++.+++.++
T Consensus 60 ~~G~GKT~la~~l~~~~~ 77 (242)
T 3bos_A 60 PVKSGRTHLIHAACARAN 77 (242)
T ss_dssp STTSSHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 799999999999998764
No 181
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.88 E-value=0.00034 Score=55.27 Aligned_cols=24 Identities=25% Similarity=0.384 Sum_probs=21.6
Q ss_pred CCCCChhHHHHHHHHHhCCceech
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHLSA 24 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i~~ 24 (169)
|||+|||++|+.+|..++.+++..
T Consensus 246 PPGTGKT~LAraiA~elg~~~~~v 269 (806)
T 3cf2_A 246 PPGTGKTLIARAVANETGAFFFLI 269 (806)
T ss_dssp CTTSCHHHHHHHHHTTTTCEEEEE
T ss_pred CCCCCHHHHHHHHHHHhCCeEEEE
Confidence 899999999999999999877654
No 182
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.88 E-value=0.00062 Score=48.06 Aligned_cols=29 Identities=28% Similarity=0.439 Sum_probs=22.2
Q ss_pred CCCCChhHHHHHHHHHh---CCc--eechhHHHH
Q 040894 1 GPGSGKSTQCSKIAKHL---GFR--HLSAGDLLE 29 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~---~~~--~i~~d~~~~ 29 (169)
|||+||||+++.+++.+ +.. +++..++..
T Consensus 45 ~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~~~~ 78 (324)
T 1l8q_A 45 SVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQ 78 (324)
T ss_dssp SSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHHCCCEEEEEEHHHHHH
Confidence 79999999999999977 544 456555543
No 183
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.88 E-value=0.00054 Score=43.84 Aligned_cols=17 Identities=29% Similarity=0.135 Sum_probs=15.2
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
++||||||++..|+..+
T Consensus 12 ~sGsGKTTl~~~L~~~l 28 (169)
T 1xjc_A 12 YKHSGKTTLMEKWVAAA 28 (169)
T ss_dssp CTTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhh
Confidence 58999999999998875
No 184
>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus}
Probab=96.87 E-value=0.011 Score=46.54 Aligned_cols=92 Identities=11% Similarity=0.207 Sum_probs=49.1
Q ss_pred HHHHHHHHHcCCCceEEEeCCCCChHHHHHHHhhcCCCCCEEEEEEcCHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHhh
Q 040894 58 VKLLQKAMQESQNKNFVIDGFPRNEENLSAAENILKIEPNAVLVFDCSEEEMTRRILSRNQGRVDDKIDTIKKRLNVYSE 137 (169)
Q Consensus 58 ~~~l~~~~~~~~~~~~i~d~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~ 137 (169)
.+.++..+.. +..+|+|.-+ .....+.. ....| ++||+..|.-..++++..| + ..+.+.+++.....
T Consensus 610 ~~~v~~~~~~--g~~~ildi~~---~~~~~l~~-~~~~p-~~ifi~pps~~~L~~l~~R--~----t~~~~~~rl~~a~~ 676 (721)
T 2xkx_A 610 VQSVREVAEQ--GKHCILDVSA---NAVRRLQA-AHLHP-IAIFIRPRSLENVLEINKR--I----TEEQARKAFDRATK 676 (721)
T ss_pred HHHHHHHHHC--CCcEEEeCCH---HHHHHHHh-cccCC-EEEEEeCCcHHHHHHHhcc--C----CHHHHHHHHHHHHH
Confidence 4556666765 8889998642 22222332 22334 8999998765555557777 3 22344545444321
Q ss_pred chhhHHHHhhhcCcEEEEeCCCChHHHHHhh
Q 040894 138 STLPVINYYSSKGKVRKIDAGRPIEEVFDEI 168 (169)
Q Consensus 138 ~~~~~~~~~~~~~~~~~id~~~~~~~v~~~i 168 (169)
.. ..+....+. +|.++ +.++.++++
T Consensus 677 ~e----~~~~~~fd~-vi~Nd-~l~~a~~~l 701 (721)
T 2xkx_A 677 LE----QEFTECFSA-IVEGD-SFEEIYHKV 701 (721)
T ss_pred HH----HhccccCcE-EEECc-CHHHHHHHH
Confidence 11 012222343 44444 788887765
No 185
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.86 E-value=0.0027 Score=50.25 Aligned_cols=24 Identities=29% Similarity=0.397 Sum_probs=21.9
Q ss_pred CCCCChhHHHHHHHHHhCCceech
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHLSA 24 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i~~ 24 (169)
|||+|||.+|+.+|..++.+++..
T Consensus 519 PPGtGKT~lAkaiA~e~~~~f~~v 542 (806)
T 3cf2_A 519 PPGCGKTLLAKAIANECQANFISI 542 (806)
T ss_dssp STTSSHHHHHHHHHHTTTCEEEEC
T ss_pred CCCCCchHHHHHHHHHhCCceEEe
Confidence 899999999999999999887664
No 186
>3tvt_A Disks large 1 tumor suppressor protein; DLG, SRC-homology-3, guanylate kinase, phosphorylation-depen cell membrane; 1.60A {Drosophila melanogaster} PDB: 3uat_A*
Probab=96.85 E-value=0.029 Score=39.11 Aligned_cols=91 Identities=9% Similarity=0.126 Sum_probs=46.8
Q ss_pred HHHHHHHHHcCCCceEEEeCCCCChHHHHHHHhhcCCCCCEEEEEEcC-HHHHHHHHhcCCCCCCCCcHHHHHHHHHHHh
Q 040894 58 VKLLQKAMQESQNKNFVIDGFPRNEENLSAAENILKIEPNAVLVFDCS-EEEMTRRILSRNQGRVDDKIDTIKKRLNVYS 136 (169)
Q Consensus 58 ~~~l~~~~~~~~~~~~i~d~~~~~~~~~~~~~~~~~~~~~~~i~l~~~-~~~~~~R~~~R~~~~~~~~~~~~~~~~~~~~ 136 (169)
...+...+.. +..+|+|--+. -+..+.. ....| ++||+..| .+++.+|+.+| ..+..+.+..+.....
T Consensus 179 ~~~V~~~~~~--gk~viLdid~q---g~~~lk~-~~~~p-i~IFI~PpS~e~L~~r~~~r----~~e~~~~~~~r~~k~e 247 (292)
T 3tvt_A 179 VASVREVAEK--GKHCILDVSGN---AIKRLQV-AQLYP-VAVFIKPKSVDSVMEMNRRM----TEEQAKKTYERAIKME 247 (292)
T ss_dssp HHHHHHHHHH--TCEEEECCCTH---HHHHHHH-TTCCC-EEEEECCSCHHHHHHTCTTS----CTTHHHHHHHHHHHHH
T ss_pred hHHHHHHHHc--CCcEEEeccch---hhhhccc-ccccc-eEEEEECCCHHHHHHHHhCC----CchhHHHHHHHHHHHH
Confidence 4556666666 88899986433 3333443 33444 77888875 55666555444 2233333333332221
Q ss_pred hchhhHHHHhhhcCcEEEEeCCCChHHHHHhh
Q 040894 137 ESTLPVINYYSSKGKVRKIDAGRPIEEVFDEI 168 (169)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~id~~~~~~~v~~~i 168 (169)
..+....+.+++ + .+.++.+++|
T Consensus 248 -------~e~~~~fD~vIv-N-ddle~a~~~l 270 (292)
T 3tvt_A 248 -------QEFGEYFTGVVQ-G-DTIEEIYSKV 270 (292)
T ss_dssp -------HHHTTTCSEEEC-C-SSHHHHHHHH
T ss_pred -------HhhhhhCCEEEE-C-cCHHHHHHHH
Confidence 122222344443 3 3677777765
No 187
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=96.85 E-value=0.00055 Score=43.33 Aligned_cols=17 Identities=24% Similarity=0.395 Sum_probs=15.7
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
|.||||||+++.|+..+
T Consensus 41 ~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 41 DLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp STTSSHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHhC
Confidence 68999999999999876
No 188
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=96.85 E-value=0.00041 Score=48.91 Aligned_cols=24 Identities=21% Similarity=0.436 Sum_probs=20.6
Q ss_pred CCCCChhHHHHHHHHHhCCceech
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHLSA 24 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i~~ 24 (169)
|||+||||+++.+++.++..++..
T Consensus 56 ~~G~GKT~la~~la~~l~~~~~~i 79 (324)
T 3u61_B 56 SPGTGKTTVAKALCHDVNADMMFV 79 (324)
T ss_dssp STTSSHHHHHHHHHHHTTEEEEEE
T ss_pred cCCCCHHHHHHHHHHHhCCCEEEE
Confidence 699999999999999998766543
No 189
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=96.84 E-value=0.00064 Score=50.29 Aligned_cols=23 Identities=30% Similarity=0.346 Sum_probs=20.3
Q ss_pred CCCCChhHHHHHHHHHhCCceec
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHLS 23 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i~ 23 (169)
|||+||||+|+.+++.++..++.
T Consensus 58 ppGtGKTtlAr~ia~~~~~~f~~ 80 (447)
T 3pvs_A 58 PPGTGKTTLAEVIARYANADVER 80 (447)
T ss_dssp STTSSHHHHHHHHHHHTTCEEEE
T ss_pred CCCCcHHHHHHHHHHHhCCCeEE
Confidence 79999999999999999876544
No 190
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.83 E-value=0.00053 Score=42.61 Aligned_cols=17 Identities=24% Similarity=0.448 Sum_probs=15.4
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
|||+|||++|+.+++..
T Consensus 32 ~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 32 APGTGRMTGARYLHQFG 48 (145)
T ss_dssp STTSSHHHHHHHHHHSS
T ss_pred CCCCCHHHHHHHHHHhC
Confidence 69999999999998865
No 191
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.79 E-value=0.00063 Score=44.54 Aligned_cols=30 Identities=23% Similarity=0.295 Sum_probs=21.7
Q ss_pred CCCCChhHHHHHHHHHh---CCc--eechhHHHHH
Q 040894 1 GPGSGKSTQCSKIAKHL---GFR--HLSAGDLLEA 30 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~---~~~--~i~~d~~~~~ 30 (169)
|||+||||+++.++..+ +.. +++..++...
T Consensus 62 ~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~~~~ 96 (202)
T 2w58_A 62 SFGVGKTYLLAAIANELAKRNVSSLIVYVPELFRE 96 (202)
T ss_dssp STTSSHHHHHHHHHHHHHTTTCCEEEEEHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHcCCeEEEEEhHHHHHH
Confidence 79999999999999877 333 3555554443
No 192
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.79 E-value=0.00051 Score=45.78 Aligned_cols=17 Identities=29% Similarity=0.360 Sum_probs=15.1
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
|+||||||+++.|+-.+
T Consensus 33 ~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 33 EFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp STTSSHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 79999999999998743
No 193
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=96.79 E-value=0.00053 Score=46.32 Aligned_cols=14 Identities=36% Similarity=0.698 Sum_probs=13.2
Q ss_pred CCCCChhHHHHHHH
Q 040894 1 GPGSGKSTQCSKIA 14 (169)
Q Consensus 1 ~~GsGKsTla~~La 14 (169)
|+||||||+++.++
T Consensus 38 pnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 38 GTGTGKTTFAAQFI 51 (251)
T ss_dssp CTTSSHHHHHHHHH
T ss_pred CCCCCHHHHHHHHH
Confidence 79999999999987
No 194
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=96.79 E-value=0.00073 Score=47.53 Aligned_cols=22 Identities=41% Similarity=0.540 Sum_probs=19.5
Q ss_pred CCCCChhHHHHHHHHHhCCcee
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHL 22 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i 22 (169)
|||+||||+|+.+++.++.+++
T Consensus 46 ~~GtGKT~la~~i~~~~~~~~~ 67 (324)
T 1hqc_A 46 PPGLGKTTLAHVIAHELGVNLR 67 (324)
T ss_dssp CTTCCCHHHHHHHHHHHTCCEE
T ss_pred CCCCCHHHHHHHHHHHhCCCEE
Confidence 7999999999999999887654
No 195
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=96.78 E-value=0.00068 Score=44.21 Aligned_cols=17 Identities=41% Similarity=0.573 Sum_probs=15.7
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
|+||||||+++.|+..+
T Consensus 9 ~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 9 PPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CCSSCHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHhhc
Confidence 78999999999999876
No 196
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=96.76 E-value=0.00061 Score=44.02 Aligned_cols=20 Identities=25% Similarity=0.317 Sum_probs=17.0
Q ss_pred CCCCChhHHHHHHHHHhCCce
Q 040894 1 GPGSGKSTQCSKIAKHLGFRH 21 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~ 21 (169)
++||||||+|..|+.. +.++
T Consensus 7 g~~SGKS~~A~~la~~-~~~~ 26 (180)
T 1c9k_A 7 GARSGKSRHAEALIGD-APQV 26 (180)
T ss_dssp CTTSSHHHHHHHHHCS-CSSE
T ss_pred CCCCcHHHHHHHHHhc-CCCe
Confidence 6899999999999987 6543
No 197
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=96.75 E-value=0.00059 Score=46.23 Aligned_cols=17 Identities=35% Similarity=0.337 Sum_probs=15.0
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
|+||||||+++.|+--+
T Consensus 32 ~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 32 PTGAGKSVFLELIAGIV 48 (240)
T ss_dssp CTTSSHHHHHHHHHTSS
T ss_pred CCCCCHHHHHHHHhCCC
Confidence 78999999999998654
No 198
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=96.74 E-value=0.00047 Score=46.59 Aligned_cols=17 Identities=41% Similarity=0.280 Sum_probs=14.9
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
|+||||||+++.|+--+
T Consensus 39 ~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 39 PSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp STTSSHHHHHHHHTTSS
T ss_pred CCCCcHHHHHHHHhcCC
Confidence 78999999999997644
No 199
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=96.74 E-value=0.00063 Score=50.30 Aligned_cols=28 Identities=32% Similarity=0.490 Sum_probs=20.2
Q ss_pred CCCCChhHHHHHHHHHh-CCcee--chhHHH
Q 040894 1 GPGSGKSTQCSKIAKHL-GFRHL--SAGDLL 28 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~-~~~~i--~~d~~~ 28 (169)
|||+|||++|+.++..+ +.+++ +..++.
T Consensus 175 ppGtGKT~lA~aia~~~~~~~~~~v~~~~l~ 205 (444)
T 2zan_A 175 PPGTGKSYLAKAVATEANNSTFFSISSSDLV 205 (444)
T ss_dssp STTSSHHHHHHHHHHHCCSSEEEEECCC---
T ss_pred CCCCCHHHHHHHHHHHcCCCCEEEEeHHHHH
Confidence 79999999999999998 65543 433444
No 200
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=96.74 E-value=0.00069 Score=50.77 Aligned_cols=23 Identities=22% Similarity=0.391 Sum_probs=19.8
Q ss_pred CCCCChhHHHHHHHHHhCCceec
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHLS 23 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i~ 23 (169)
|||+||||+++.++...+.+++.
T Consensus 72 ppGtGKTtLaraIa~~~~~~~i~ 94 (499)
T 2dhr_A 72 PPGVGKTHLARAVAGEARVPFIT 94 (499)
T ss_dssp SSSSSHHHHHHHHHHHTTCCEEE
T ss_pred CCCCCHHHHHHHHHHHhCCCEEE
Confidence 79999999999999988766544
No 201
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=96.73 E-value=0.00072 Score=47.26 Aligned_cols=17 Identities=47% Similarity=0.704 Sum_probs=16.0
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
|||+||||+|+.+++.+
T Consensus 75 ~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 75 NPGTGKTTVALKMAGLL 91 (309)
T ss_dssp CTTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 79999999999999987
No 202
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=96.72 E-value=0.00061 Score=48.21 Aligned_cols=22 Identities=23% Similarity=0.374 Sum_probs=19.4
Q ss_pred CCCCChhHHHHHHHHHhCCcee
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHL 22 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i 22 (169)
|||+|||++|+.+++.++.++.
T Consensus 54 ~pGtGKT~la~~la~~~~~~~~ 75 (331)
T 2r44_A 54 VPGLAKTLSVNTLAKTMDLDFH 75 (331)
T ss_dssp CCCHHHHHHHHHHHHHTTCCEE
T ss_pred CCCCcHHHHHHHHHHHhCCCeE
Confidence 7999999999999999886543
No 203
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=96.72 E-value=0.00051 Score=46.05 Aligned_cols=17 Identities=35% Similarity=0.245 Sum_probs=14.8
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
|+||||||+++.|+--+
T Consensus 38 ~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 38 ASGSGKSTLLYILGLLD 54 (224)
T ss_dssp CTTSCHHHHHHHHTTSS
T ss_pred CCCCCHHHHHHHHhcCC
Confidence 78999999999997644
No 204
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=96.71 E-value=0.00062 Score=45.12 Aligned_cols=16 Identities=31% Similarity=0.289 Sum_probs=14.2
Q ss_pred CCCCChhHHHHHHHHH
Q 040894 1 GPGSGKSTQCSKIAKH 16 (169)
Q Consensus 1 ~~GsGKsTla~~La~~ 16 (169)
|+||||||+++.|+-.
T Consensus 30 ~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 30 PAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp CTTSSTTHHHHHHHHH
T ss_pred CCCCCHHHHHHHHhcC
Confidence 7899999999999763
No 205
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=96.64 E-value=0.00093 Score=47.87 Aligned_cols=19 Identities=37% Similarity=0.616 Sum_probs=17.6
Q ss_pred CCCCChhHHHHHHHHHhCC
Q 040894 1 GPGSGKSTQCSKIAKHLGF 19 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~ 19 (169)
|||+|||++|+.+++.++.
T Consensus 78 ppGtGKT~la~~la~~l~~ 96 (368)
T 3uk6_A 78 QPGTGKTAIAMGMAQALGP 96 (368)
T ss_dssp STTSSHHHHHHHHHHHHCS
T ss_pred CCCCCHHHHHHHHHHHhcc
Confidence 7999999999999999874
No 206
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.64 E-value=0.00093 Score=44.55 Aligned_cols=19 Identities=32% Similarity=0.410 Sum_probs=16.8
Q ss_pred CCCCChhHHHHHHHHHhCC
Q 040894 1 GPGSGKSTQCSKIAKHLGF 19 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~ 19 (169)
|||+||||+++.+++.++.
T Consensus 53 ~~G~GKT~l~~~~~~~~~~ 71 (250)
T 1njg_A 53 TRGVGKTSIARLLAKGLNC 71 (250)
T ss_dssp STTSCHHHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHhcC
Confidence 7999999999999998743
No 207
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.63 E-value=0.001 Score=42.77 Aligned_cols=17 Identities=35% Similarity=0.454 Sum_probs=15.0
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
++||||||+++.|...+
T Consensus 14 ~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 14 WSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CTTSCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhc
Confidence 68999999999998764
No 208
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=96.61 E-value=0.001 Score=42.65 Aligned_cols=24 Identities=17% Similarity=0.237 Sum_probs=19.7
Q ss_pred CCCCChhHHHHHHHHHhCCceechh
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHLSAG 25 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i~~d 25 (169)
+||+||||+|..|.++ |+..+.-|
T Consensus 24 ~SGaGKStlal~L~~r-G~~lvaDD 47 (181)
T 3tqf_A 24 EANIGKSELSLALIDR-GHQLVCDD 47 (181)
T ss_dssp SSSSSHHHHHHHHHHT-TCEEEESS
T ss_pred CCCCCHHHHHHHHHHc-CCeEecCC
Confidence 6899999999999885 77766643
No 209
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.61 E-value=0.001 Score=43.76 Aligned_cols=17 Identities=35% Similarity=0.718 Sum_probs=15.7
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
|||+||||+++.+++.+
T Consensus 46 ~~G~GKT~l~~~l~~~~ 62 (226)
T 2chg_A 46 PPGTGKTATAIALARDL 62 (226)
T ss_dssp STTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 79999999999999876
No 210
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=96.60 E-value=0.00046 Score=44.29 Aligned_cols=17 Identities=29% Similarity=0.391 Sum_probs=15.4
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
++||||||+++.|+..+
T Consensus 10 ~SGsGKSTL~~~L~~~~ 26 (171)
T 2f1r_A 10 TSDSGKTTLITRMMPIL 26 (171)
T ss_dssp SCHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 68999999999998876
No 211
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=96.59 E-value=0.001 Score=45.61 Aligned_cols=17 Identities=35% Similarity=0.485 Sum_probs=15.2
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
|+||||||+++.|+..+
T Consensus 33 p~GsGKSTll~~l~g~~ 49 (261)
T 2eyu_A 33 PTGSGKSTTIASMIDYI 49 (261)
T ss_dssp STTCSHHHHHHHHHHHH
T ss_pred CCCccHHHHHHHHHHhC
Confidence 78999999999998755
No 212
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.59 E-value=0.001 Score=46.48 Aligned_cols=17 Identities=29% Similarity=0.450 Sum_probs=16.1
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
|||+||||+|+.+++.+
T Consensus 55 ~~GtGKt~la~~la~~~ 71 (311)
T 4fcw_A 55 PTGVGKTELAKTLAATL 71 (311)
T ss_dssp CSSSSHHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHH
Confidence 79999999999999987
No 213
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.58 E-value=0.0011 Score=50.26 Aligned_cols=21 Identities=43% Similarity=0.681 Sum_probs=18.7
Q ss_pred CCCCChhHHHHHHHHHhCCce
Q 040894 1 GPGSGKSTQCSKIAKHLGFRH 21 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~ 21 (169)
|||+||||+++.++..++..+
T Consensus 116 p~GtGKTtlar~ia~~l~~~~ 136 (543)
T 3m6a_A 116 PPGVGKTSLAKSIAKSLGRKF 136 (543)
T ss_dssp SSSSSHHHHHHHHHHHHTCEE
T ss_pred CCCCCHHHHHHHHHHhcCCCe
Confidence 799999999999999987554
No 214
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=96.58 E-value=0.00072 Score=46.55 Aligned_cols=17 Identities=35% Similarity=0.362 Sum_probs=14.9
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
|+||||||+++.|+--+
T Consensus 45 ~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 45 PNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp CTTSCHHHHHHHHTSSS
T ss_pred CCCCcHHHHHHHHhcCC
Confidence 78999999999997644
No 215
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=96.58 E-value=0.00093 Score=50.01 Aligned_cols=24 Identities=25% Similarity=0.384 Sum_probs=21.0
Q ss_pred CCCCChhHHHHHHHHHhCCceech
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHLSA 24 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i~~ 24 (169)
|||+|||++|+.++..++.+++..
T Consensus 246 ppGtGKT~lAraia~~~~~~fv~v 269 (489)
T 3hu3_A 246 PPGTGKTLIARAVANETGAFFFLI 269 (489)
T ss_dssp STTSSHHHHHHHHHHHCSSEEEEE
T ss_pred cCCCCHHHHHHHHHHHhCCCEEEE
Confidence 799999999999999998776553
No 216
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.57 E-value=0.0011 Score=44.15 Aligned_cols=17 Identities=24% Similarity=0.347 Sum_probs=14.8
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
||||||||+++.++...
T Consensus 31 ~~GsGKTtl~~~l~~~~ 47 (235)
T 2w0m_A 31 EPGTGKTIFSLHFIAKG 47 (235)
T ss_dssp STTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 79999999999998543
No 217
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=96.57 E-value=0.00073 Score=46.74 Aligned_cols=17 Identities=41% Similarity=0.507 Sum_probs=14.9
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
|+||||||+++.|+--+
T Consensus 42 pnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 42 GNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp CTTSSHHHHHHHHTTSS
T ss_pred CCCCCHHHHHHHHHcCC
Confidence 78999999999997644
No 218
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.57 E-value=0.00089 Score=48.07 Aligned_cols=17 Identities=24% Similarity=0.425 Sum_probs=16.0
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
|||+||||+++.+++.+
T Consensus 52 ~~G~GKT~l~~~~~~~~ 68 (387)
T 2v1u_A 52 LTGTGKTAVARLVLRRL 68 (387)
T ss_dssp CTTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 79999999999999987
No 219
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=96.57 E-value=0.00076 Score=44.89 Aligned_cols=17 Identities=35% Similarity=0.397 Sum_probs=14.9
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
|+||||||+++.|+--+
T Consensus 43 ~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 43 PNGIGKTTLLKTISTYL 59 (214)
T ss_dssp CTTSSHHHHHHHHTTSS
T ss_pred CCCCCHHHHHHHHhcCC
Confidence 78999999999997654
No 220
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=96.56 E-value=0.00074 Score=45.65 Aligned_cols=17 Identities=29% Similarity=0.403 Sum_probs=14.8
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
|+||||||+++.|+--+
T Consensus 39 ~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 39 QVGCGKSSLLSALLAEM 55 (237)
T ss_dssp STTSSHHHHHHHHTTCS
T ss_pred CCCCCHHHHHHHHhcCC
Confidence 78999999999997654
No 221
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=96.55 E-value=0.00077 Score=46.28 Aligned_cols=17 Identities=41% Similarity=0.251 Sum_probs=15.0
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
|+||||||+++.|+--+
T Consensus 40 ~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 40 SSGSGKSTFLRCINFLE 56 (262)
T ss_dssp CTTSSHHHHHHHHTTSS
T ss_pred CCCCCHHHHHHHHhcCC
Confidence 78999999999997654
No 222
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=96.55 E-value=0.00093 Score=48.06 Aligned_cols=20 Identities=35% Similarity=0.434 Sum_probs=17.5
Q ss_pred CCCCChhHHHHHHHHHhCCc
Q 040894 1 GPGSGKSTQCSKIAKHLGFR 20 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~ 20 (169)
|+||||||+++.|+..++..
T Consensus 178 ~nGsGKSTLlk~L~gl~~~~ 197 (365)
T 1lw7_A 178 GESSGKSVLVNKLAAVFNTT 197 (365)
T ss_dssp CTTSHHHHHHHHHHHHTTCE
T ss_pred CCCCCHHHHHHHHHHHhCCC
Confidence 68999999999999987643
No 223
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=96.54 E-value=0.0013 Score=49.00 Aligned_cols=17 Identities=29% Similarity=0.642 Sum_probs=16.2
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
|||+||||+++.|++.+
T Consensus 209 ~pG~GKT~la~~la~~l 225 (468)
T 3pxg_A 209 EPGVGKTAIAEGLAQQI 225 (468)
T ss_dssp CTTTTTHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 79999999999999987
No 224
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.54 E-value=0.0011 Score=47.13 Aligned_cols=18 Identities=28% Similarity=0.584 Sum_probs=16.4
Q ss_pred CCCCChhHHHHHHHHHhC
Q 040894 1 GPGSGKSTQCSKIAKHLG 18 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~ 18 (169)
|||+||||+++.+++.+.
T Consensus 54 p~G~GKTtla~~la~~l~ 71 (340)
T 1sxj_C 54 PPGTGKTSTIVALAREIY 71 (340)
T ss_dssp SSSSSHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHc
Confidence 799999999999999863
No 225
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=96.54 E-value=0.0011 Score=46.42 Aligned_cols=18 Identities=39% Similarity=0.802 Sum_probs=16.2
Q ss_pred CCCCChhHHHHHHHHHhC
Q 040894 1 GPGSGKSTQCSKIAKHLG 18 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~ 18 (169)
|+||||||+++.|+.-+.
T Consensus 134 psGsGKSTLl~lL~gl~~ 151 (305)
T 2v9p_A 134 PPNTGKSMLCNSLIHFLG 151 (305)
T ss_dssp SSSSSHHHHHHHHHHHHT
T ss_pred CCCCcHHHHHHHHhhhcC
Confidence 799999999999998763
No 226
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=96.54 E-value=0.001 Score=45.39 Aligned_cols=16 Identities=38% Similarity=0.389 Sum_probs=14.5
Q ss_pred CCCCChhHHHHHHHHH
Q 040894 1 GPGSGKSTQCSKIAKH 16 (169)
Q Consensus 1 ~~GsGKsTla~~La~~ 16 (169)
|+||||||+++.|+--
T Consensus 37 ~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 37 PNGAGKSTLGKILAGD 52 (250)
T ss_dssp STTSSHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHhCC
Confidence 7899999999999874
No 227
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.53 E-value=0.0012 Score=47.44 Aligned_cols=17 Identities=24% Similarity=0.300 Sum_probs=15.9
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
|||+||||+++.+++.+
T Consensus 53 ~~G~GKT~la~~l~~~~ 69 (384)
T 2qby_B 53 LTGTGKTFVSKYIFNEI 69 (384)
T ss_dssp CTTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 79999999999999977
No 228
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.52 E-value=0.00082 Score=45.52 Aligned_cols=17 Identities=41% Similarity=0.522 Sum_probs=14.9
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
|+||||||+++.|+--+
T Consensus 40 ~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 40 ANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp STTSSHHHHHHHHTTSS
T ss_pred CCCCCHHHHHHHHhCCC
Confidence 78999999999997654
No 229
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=96.52 E-value=0.00082 Score=46.01 Aligned_cols=17 Identities=47% Similarity=0.485 Sum_probs=14.9
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
|+||||||+.+.|+--+
T Consensus 41 ~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 41 PNGSGKSTLINVITGFL 57 (257)
T ss_dssp STTSSHHHHHHHHTTSS
T ss_pred CCCCCHHHHHHHHhCCC
Confidence 78999999999997654
No 230
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=96.51 E-value=0.00086 Score=45.51 Aligned_cols=17 Identities=35% Similarity=0.454 Sum_probs=14.9
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
|+||||||+++.|+--+
T Consensus 36 ~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 36 PSGGGKSTIFSLLERFY 52 (243)
T ss_dssp CTTSSHHHHHHHHTTSS
T ss_pred CCCCCHHHHHHHHhcCC
Confidence 78999999999997654
No 231
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=96.50 E-value=0.00087 Score=46.07 Aligned_cols=17 Identities=35% Similarity=0.212 Sum_probs=15.0
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
|+||||||+++.|+--+
T Consensus 58 ~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 58 PSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp CTTSSHHHHHHHHTTSS
T ss_pred CCCCcHHHHHHHHHcCC
Confidence 78999999999997654
No 232
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=96.48 E-value=0.0013 Score=46.12 Aligned_cols=17 Identities=29% Similarity=0.436 Sum_probs=15.6
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
|+||||||+++.|+..+
T Consensus 110 ~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 110 VNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp STTSSHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHH
Confidence 78999999999999876
No 233
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=96.48 E-value=0.0009 Score=45.54 Aligned_cols=17 Identities=41% Similarity=0.491 Sum_probs=15.0
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
|+||||||+++.|+--+
T Consensus 43 ~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 43 RSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp STTSSHHHHHHHHTTSS
T ss_pred CCCCCHHHHHHHHhcCC
Confidence 78999999999997754
No 234
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.47 E-value=0.00092 Score=45.74 Aligned_cols=17 Identities=29% Similarity=0.419 Sum_probs=14.9
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
|+||||||+++.|+--+
T Consensus 49 ~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 49 PNGAGKTTTLRIISTLI 65 (256)
T ss_dssp CTTSSHHHHHHHHTTSS
T ss_pred CCCCCHHHHHHHHhcCC
Confidence 78999999999997654
No 235
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=96.47 E-value=0.0011 Score=47.54 Aligned_cols=17 Identities=29% Similarity=0.325 Sum_probs=15.0
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
|+||||||+++.++--.
T Consensus 38 psGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 38 ASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp STTSSHHHHHHHHHTSS
T ss_pred CCCchHHHHHHHHhcCC
Confidence 79999999999998644
No 236
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=96.47 E-value=0.0003 Score=43.65 Aligned_cols=18 Identities=22% Similarity=0.038 Sum_probs=16.1
Q ss_pred CCCCChhHHHHHHHHHhC
Q 040894 1 GPGSGKSTQCSKIAKHLG 18 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~ 18 (169)
|||+|||++|+.+++..+
T Consensus 35 ~~GtGKt~lA~~i~~~~~ 52 (143)
T 3co5_A 35 EAGSPFETVARYFHKNGT 52 (143)
T ss_dssp ETTCCHHHHHGGGCCTTS
T ss_pred CCCccHHHHHHHHHHhCC
Confidence 699999999999988766
No 237
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.47 E-value=0.0012 Score=43.71 Aligned_cols=18 Identities=28% Similarity=0.196 Sum_probs=15.2
Q ss_pred CCCCChhHHHHHHHHHhC
Q 040894 1 GPGSGKSTQCSKIAKHLG 18 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~ 18 (169)
||||||||++..++..-+
T Consensus 28 ~~GsGKTtl~~~l~~~~~ 45 (220)
T 2cvh_A 28 PYASGKTTLALQTGLLSG 45 (220)
T ss_dssp STTSSHHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHcC
Confidence 799999999999987434
No 238
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.47 E-value=0.0017 Score=46.52 Aligned_cols=17 Identities=24% Similarity=0.346 Sum_probs=16.0
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
|||+||||+++.+++.+
T Consensus 53 ~~G~GKTtl~~~l~~~~ 69 (386)
T 2qby_A 53 LTGTGKTAVVKFVLSKL 69 (386)
T ss_dssp CTTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 79999999999999977
No 239
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=96.47 E-value=0.0012 Score=45.49 Aligned_cols=16 Identities=44% Similarity=0.526 Sum_probs=14.5
Q ss_pred CCCCChhHHHHHHHHH
Q 040894 1 GPGSGKSTQCSKIAKH 16 (169)
Q Consensus 1 ~~GsGKsTla~~La~~ 16 (169)
|+||||||+++.|+--
T Consensus 54 ~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 54 PNGSGKSTLSATLAGR 69 (267)
T ss_dssp CTTSSHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHhCC
Confidence 7899999999999874
No 240
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=96.45 E-value=0.00097 Score=44.82 Aligned_cols=17 Identities=29% Similarity=0.427 Sum_probs=15.0
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
|+||||||+.+.|+-.+
T Consensus 42 ~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 42 STGAGKTSLLMMIMGEL 58 (229)
T ss_dssp CTTSSHHHHHHHHTTSS
T ss_pred CCCCCHHHHHHHHhCCC
Confidence 78999999999997654
No 241
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=96.44 E-value=0.001 Score=45.38 Aligned_cols=17 Identities=35% Similarity=0.425 Sum_probs=14.7
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
|+||||||+++.|+-.+
T Consensus 34 ~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 34 PNGAGKSTLLARMAGMT 50 (249)
T ss_dssp CTTSSHHHHHHHHTTSS
T ss_pred CCCCcHHHHHHHHhCCC
Confidence 78999999999997644
No 242
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.43 E-value=0.0014 Score=52.12 Aligned_cols=23 Identities=30% Similarity=0.426 Sum_probs=20.0
Q ss_pred CCCCChhHHHHHHHHHhCCceec
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHLS 23 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i~ 23 (169)
|||+||||+|+.+|..++..++.
T Consensus 519 ppGtGKT~Lakala~~~~~~~i~ 541 (806)
T 1ypw_A 519 PPGCGKTLLAKAIANECQANFIS 541 (806)
T ss_dssp CTTSSHHHHHHHHHHHHTCCCCC
T ss_pred CCCCCHHHHHHHHHHHhCCCEEE
Confidence 79999999999999999866544
No 243
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.41 E-value=0.0013 Score=52.30 Aligned_cols=24 Identities=25% Similarity=0.384 Sum_probs=20.8
Q ss_pred CCCCChhHHHHHHHHHhCCceech
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHLSA 24 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i~~ 24 (169)
||||||||+++.|+..++..++..
T Consensus 246 p~GtGKTtLarala~~l~~~~i~v 269 (806)
T 1ypw_A 246 PPGTGKTLIARAVANETGAFFFLI 269 (806)
T ss_dssp CTTSSHHHHHHHHHHTTTCEEEEE
T ss_pred cCCCCHHHHHHHHHHHcCCcEEEE
Confidence 799999999999999988766544
No 244
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=96.41 E-value=0.0013 Score=47.16 Aligned_cols=17 Identities=41% Similarity=0.321 Sum_probs=14.9
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
|+||||||+++.|+--.
T Consensus 49 pnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 49 PSGSGKTTILRLIAGLE 65 (355)
T ss_dssp STTSSHHHHHHHHHTSS
T ss_pred CCCCcHHHHHHHHhCCC
Confidence 79999999999998644
No 245
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=96.40 E-value=0.0011 Score=46.00 Aligned_cols=17 Identities=24% Similarity=0.178 Sum_probs=15.0
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
|+||||||+++.|+-.+
T Consensus 55 ~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 55 LNGAGKTTLLNILNAYE 71 (279)
T ss_dssp CTTSSHHHHHHHHTTSS
T ss_pred CCCCcHHHHHHHHhCCC
Confidence 78999999999997654
No 246
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=96.40 E-value=0.0011 Score=45.84 Aligned_cols=17 Identities=35% Similarity=0.399 Sum_probs=15.0
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
|+||||||+++.|+--+
T Consensus 53 ~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 53 PNGSGKSTVAALLQNLY 69 (271)
T ss_dssp STTSSHHHHHHHHTTSS
T ss_pred CCCCCHHHHHHHHhcCC
Confidence 78999999999997754
No 247
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.40 E-value=0.0016 Score=45.65 Aligned_cols=17 Identities=41% Similarity=0.575 Sum_probs=15.6
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
|+||||||+++.|+..+
T Consensus 108 ~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 108 VNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp CTTSCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 68999999999999876
No 248
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=96.39 E-value=0.0011 Score=45.49 Aligned_cols=17 Identities=35% Similarity=0.428 Sum_probs=14.9
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
|+||||||+++.|+--+
T Consensus 54 ~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 54 HTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp STTSSHHHHHHHHTTSS
T ss_pred CCCCCHHHHHHHHhccC
Confidence 78999999999997654
No 249
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=96.39 E-value=0.0013 Score=47.17 Aligned_cols=17 Identities=29% Similarity=0.319 Sum_probs=15.0
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
|+||||||+.+.|+--.
T Consensus 37 pnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 37 PSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp STTSSHHHHHHHHHTSS
T ss_pred CCCchHHHHHHHHHCCC
Confidence 79999999999998644
No 250
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=96.38 E-value=0.002 Score=47.58 Aligned_cols=29 Identities=24% Similarity=0.449 Sum_probs=21.8
Q ss_pred CCCCChhHHHHHHHHHh-----CCc--eechhHHHH
Q 040894 1 GPGSGKSTQCSKIAKHL-----GFR--HLSAGDLLE 29 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~-----~~~--~i~~d~~~~ 29 (169)
|||+||||+++.++..+ +.. +++..++..
T Consensus 138 p~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~~~ 173 (440)
T 2z4s_A 138 GVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLN 173 (440)
T ss_dssp SSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHH
Confidence 79999999999999877 443 456555543
No 251
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=96.38 E-value=0.0014 Score=47.41 Aligned_cols=17 Identities=41% Similarity=0.313 Sum_probs=15.1
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
|+||||||+++.|+--.
T Consensus 37 psGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 37 PSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp CTTSSHHHHHHHHHTSS
T ss_pred CCCchHHHHHHHHHcCC
Confidence 79999999999998654
No 252
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=96.37 E-value=0.0011 Score=45.20 Aligned_cols=17 Identities=29% Similarity=0.218 Sum_probs=14.8
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
|+||||||+.+.|+--+
T Consensus 39 ~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 39 QNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp CSSSSHHHHHHHHTTSS
T ss_pred CCCCCHHHHHHHHhCCC
Confidence 78999999999997643
No 253
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=96.36 E-value=0.0014 Score=47.04 Aligned_cols=17 Identities=47% Similarity=0.399 Sum_probs=15.0
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
|+||||||+++.|+--.
T Consensus 37 pnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 37 PSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp CTTSSHHHHHHHHHTSS
T ss_pred CCCchHHHHHHHHhcCC
Confidence 79999999999998654
No 254
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=96.36 E-value=0.0018 Score=46.57 Aligned_cols=17 Identities=29% Similarity=0.511 Sum_probs=16.1
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
|||+||||+++.+++.+
T Consensus 52 ~~G~GKTtl~~~l~~~~ 68 (389)
T 1fnn_A 52 RPGTGKTVTLRKLWELY 68 (389)
T ss_dssp CTTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 79999999999999988
No 255
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=96.36 E-value=0.0012 Score=45.51 Aligned_cols=17 Identities=41% Similarity=0.473 Sum_probs=14.8
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
|+||||||+++.|+--+
T Consensus 41 ~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 41 NTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp STTSSHHHHHHHHTTSS
T ss_pred CCCCcHHHHHHHHhCCC
Confidence 68999999999997644
No 256
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=96.35 E-value=0.0015 Score=47.19 Aligned_cols=17 Identities=35% Similarity=0.331 Sum_probs=15.0
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
|+||||||+++.|+--.
T Consensus 45 pnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 45 PSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp CTTSSHHHHHHHHHTSS
T ss_pred CCCChHHHHHHHHHcCC
Confidence 79999999999998644
No 257
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.35 E-value=0.0015 Score=43.82 Aligned_cols=16 Identities=25% Similarity=0.416 Sum_probs=14.7
Q ss_pred CCCCChhHHHHHHHHH
Q 040894 1 GPGSGKSTQCSKIAKH 16 (169)
Q Consensus 1 ~~GsGKsTla~~La~~ 16 (169)
||||||||++..++..
T Consensus 32 ~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 32 EFRTGKTQICHTLAVT 47 (243)
T ss_dssp CTTSSHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHH
Confidence 7999999999999884
No 258
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.33 E-value=0.0018 Score=46.03 Aligned_cols=18 Identities=33% Similarity=0.562 Sum_probs=16.2
Q ss_pred CCCCChhHHHHHHHHHhC
Q 040894 1 GPGSGKSTQCSKIAKHLG 18 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~ 18 (169)
|||+||||+++.+++.++
T Consensus 66 ~~G~GKT~la~~la~~l~ 83 (353)
T 1sxj_D 66 PPGTGKTSTILALTKELY 83 (353)
T ss_dssp STTSSHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHhC
Confidence 799999999999998863
No 259
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=96.33 E-value=0.0013 Score=45.25 Aligned_cols=16 Identities=38% Similarity=0.387 Sum_probs=14.3
Q ss_pred CCCCChhHHHHHHHHH
Q 040894 1 GPGSGKSTQCSKIAKH 16 (169)
Q Consensus 1 ~~GsGKsTla~~La~~ 16 (169)
|+||||||+.+.|+-.
T Consensus 38 ~NGsGKSTLlk~l~Gl 53 (263)
T 2pjz_A 38 PNGSGKTTLLRAISGL 53 (263)
T ss_dssp CTTSSHHHHHHHHTTS
T ss_pred CCCCCHHHHHHHHhCC
Confidence 7899999999999764
No 260
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=96.33 E-value=0.0015 Score=47.13 Aligned_cols=17 Identities=35% Similarity=0.331 Sum_probs=14.9
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
|+||||||+++.|+--.
T Consensus 37 pnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 37 PSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp STTSSHHHHHHHHHTSS
T ss_pred CCCcHHHHHHHHHHcCC
Confidence 79999999999998644
No 261
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=96.30 E-value=0.002 Score=45.74 Aligned_cols=17 Identities=47% Similarity=0.567 Sum_probs=15.5
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
|+||||||+++.|+..+
T Consensus 137 ~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 137 FNGSGKTTTIAKLANWL 153 (328)
T ss_dssp CTTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 78999999999999866
No 262
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.28 E-value=0.002 Score=44.81 Aligned_cols=17 Identities=41% Similarity=0.478 Sum_probs=15.1
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
||||||||+++.++-.+
T Consensus 43 ~~G~GKTTl~~~ia~~~ 59 (296)
T 1cr0_A 43 GSGMGKSTFVRQQALQW 59 (296)
T ss_dssp STTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 79999999999988765
No 263
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.28 E-value=0.0016 Score=46.41 Aligned_cols=17 Identities=29% Similarity=0.679 Sum_probs=15.7
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
|+|+||||+++.++..+
T Consensus 44 p~G~GKTtl~~~la~~l 60 (354)
T 1sxj_E 44 PNGTGKKTRCMALLESI 60 (354)
T ss_dssp STTSSHHHHHHTHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 79999999999999965
No 264
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.25 E-value=0.0022 Score=45.05 Aligned_cols=17 Identities=47% Similarity=0.825 Sum_probs=15.5
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
|+||||||++..||..+
T Consensus 112 ~~GsGKTTl~~~LA~~l 128 (306)
T 1vma_A 112 VNGTGKTTSCGKLAKMF 128 (306)
T ss_dssp CTTSSHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHH
Confidence 68999999999999876
No 265
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=96.24 E-value=0.0019 Score=46.50 Aligned_cols=17 Identities=29% Similarity=0.265 Sum_probs=14.9
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
|+||||||+++.|+--.
T Consensus 62 pnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 62 ASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp CTTSSHHHHHHHHHTSS
T ss_pred CCCchHHHHHHHHhcCC
Confidence 78999999999997644
No 266
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=96.24 E-value=0.0018 Score=44.65 Aligned_cols=17 Identities=35% Similarity=0.388 Sum_probs=15.3
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
|+||||||+.+.|+...
T Consensus 10 ~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 10 QSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp SSSSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHhCCC
Confidence 68999999999998765
No 267
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=96.22 E-value=0.0014 Score=46.56 Aligned_cols=18 Identities=39% Similarity=0.488 Sum_probs=16.8
Q ss_pred CCCCChhHHHHHHHHHhC
Q 040894 1 GPGSGKSTQCSKIAKHLG 18 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~ 18 (169)
|||+|||++|+.+++.++
T Consensus 53 ~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 53 DRGTGKSTAVRALAALLP 70 (350)
T ss_dssp CGGGCTTHHHHHHHHHSC
T ss_pred CCCccHHHHHHHHHHhCc
Confidence 799999999999999876
No 268
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.22 E-value=0.0025 Score=41.33 Aligned_cols=17 Identities=24% Similarity=0.126 Sum_probs=14.0
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
||||||||++-.++.++
T Consensus 11 ~~gsGKTT~ll~~~~~~ 27 (184)
T 2orw_A 11 PMYSGKTTELLSFVEIY 27 (184)
T ss_dssp STTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 68999999997776654
No 269
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=96.21 E-value=0.0024 Score=50.32 Aligned_cols=17 Identities=29% Similarity=0.642 Sum_probs=16.3
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
|||+||||+|+.||+.+
T Consensus 209 ~pGtGKT~la~~la~~l 225 (758)
T 3pxi_A 209 EPGVGKTAIAEGLAQQI 225 (758)
T ss_dssp CTTTTTHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 79999999999999997
No 270
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=96.20 E-value=0.0012 Score=47.15 Aligned_cols=17 Identities=29% Similarity=0.266 Sum_probs=15.0
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
|+||||||+++.|+--.
T Consensus 34 pnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 34 PTGAGKTLFLELIAGFH 50 (348)
T ss_dssp CCTHHHHHHHHHHHTSS
T ss_pred CCCccHHHHHHHHHcCC
Confidence 79999999999998644
No 271
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=96.18 E-value=0.0027 Score=45.45 Aligned_cols=19 Identities=32% Similarity=0.410 Sum_probs=17.4
Q ss_pred CCCCChhHHHHHHHHHhCC
Q 040894 1 GPGSGKSTQCSKIAKHLGF 19 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~ 19 (169)
|||+||||+++.+++.++.
T Consensus 46 ~~G~GKT~la~~la~~l~~ 64 (373)
T 1jr3_A 46 TRGVGKTSIARLLAKGLNC 64 (373)
T ss_dssp CTTSSHHHHHHHHHHHHSC
T ss_pred CCCCCHHHHHHHHHHHhCC
Confidence 7999999999999998864
No 272
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=96.14 E-value=0.0026 Score=45.65 Aligned_cols=17 Identities=41% Similarity=0.575 Sum_probs=15.6
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
|+||||||+++.|+..+
T Consensus 165 ~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 165 VNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp CTTSCHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHhhc
Confidence 68999999999999876
No 273
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.13 E-value=0.0028 Score=42.57 Aligned_cols=17 Identities=29% Similarity=0.497 Sum_probs=14.1
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
||||||||++..++...
T Consensus 31 ~~GsGKTtl~~~~~~~~ 47 (247)
T 2dr3_A 31 GPGTGKTIFSQQFLWNG 47 (247)
T ss_dssp CTTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 79999999988876643
No 274
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.12 E-value=0.0028 Score=44.33 Aligned_cols=17 Identities=35% Similarity=0.497 Sum_probs=15.0
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
|+||||||++..||..+
T Consensus 113 ~~GsGKTTl~~~LA~~l 129 (296)
T 2px0_A 113 STGAGKTTTLAKLAAIS 129 (296)
T ss_dssp STTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 68999999999998765
No 275
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=96.09 E-value=0.0024 Score=46.41 Aligned_cols=16 Identities=44% Similarity=0.453 Sum_probs=14.3
Q ss_pred CCCCChhHHHHHHHHH
Q 040894 1 GPGSGKSTQCSKIAKH 16 (169)
Q Consensus 1 ~~GsGKsTla~~La~~ 16 (169)
|+||||||+++.|+--
T Consensus 55 psGsGKSTLLr~iaGl 70 (390)
T 3gd7_A 55 RTGSGKSTLLSAFLRL 70 (390)
T ss_dssp STTSSHHHHHHHHHTC
T ss_pred CCCChHHHHHHHHhCC
Confidence 7899999999999853
No 276
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=96.07 E-value=0.0025 Score=43.99 Aligned_cols=17 Identities=29% Similarity=0.452 Sum_probs=14.5
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
||||||||++..++...
T Consensus 38 ~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 38 PGGAGKSMLALQLAAQI 54 (279)
T ss_dssp STTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 79999999999988543
No 277
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.07 E-value=0.0029 Score=45.71 Aligned_cols=17 Identities=35% Similarity=0.485 Sum_probs=15.3
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
|+||||||+++.|+..+
T Consensus 144 ~~GsGKTTll~~l~~~~ 160 (372)
T 2ewv_A 144 PTGSGKSTTIASMIDYI 160 (372)
T ss_dssp SSSSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHhhc
Confidence 78999999999998865
No 278
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.06 E-value=0.003 Score=44.36 Aligned_cols=31 Identities=23% Similarity=0.178 Sum_probs=22.2
Q ss_pred CCCCChhHHHHHHHHHhC----Cce--echhHHHHHH
Q 040894 1 GPGSGKSTQCSKIAKHLG----FRH--LSAGDLLEAE 31 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~----~~~--i~~d~~~~~~ 31 (169)
|||+|||++|..++..+. ..+ +...+++...
T Consensus 160 ~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~l~~~l 196 (308)
T 2qgz_A 160 DMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFAIDV 196 (308)
T ss_dssp STTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHHHHHHH
Confidence 799999999999988653 433 5665555443
No 279
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=96.06 E-value=0.0031 Score=44.23 Aligned_cols=17 Identities=41% Similarity=0.696 Sum_probs=15.9
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
|||+||||+++.+++.+
T Consensus 54 ~~G~GKT~la~~l~~~l 70 (327)
T 1iqp_A 54 PPGVGKTTAALALAREL 70 (327)
T ss_dssp CTTSSHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHh
Confidence 79999999999999986
No 280
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=96.05 E-value=0.0027 Score=43.43 Aligned_cols=18 Identities=22% Similarity=0.278 Sum_probs=16.2
Q ss_pred CCCCChhHHHHHHHHHhC
Q 040894 1 GPGSGKSTQCSKIAKHLG 18 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~ 18 (169)
|||+|||++|+.+++..+
T Consensus 37 ~~GtGKt~la~~i~~~~~ 54 (265)
T 2bjv_A 37 ERGTGKELIASRLHYLSS 54 (265)
T ss_dssp CTTSCHHHHHHHHHHTST
T ss_pred CCCCcHHHHHHHHHHhcC
Confidence 699999999999998764
No 281
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=96.03 E-value=0.0021 Score=44.76 Aligned_cols=17 Identities=29% Similarity=0.427 Sum_probs=14.9
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
|+||||||+++.|+--+
T Consensus 72 ~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 72 STGAGKTSLLMMIMGEL 88 (290)
T ss_dssp STTSSHHHHHHHHTTSS
T ss_pred CCCCcHHHHHHHHhcCC
Confidence 68999999999997654
No 282
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.01 E-value=0.0032 Score=45.17 Aligned_cols=17 Identities=41% Similarity=0.483 Sum_probs=15.1
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
|+||||||+++.++..+
T Consensus 131 ptGSGKTTlL~~l~g~~ 147 (356)
T 3jvv_A 131 PTGSGKSTTLAAMLDYL 147 (356)
T ss_dssp STTSCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHhcc
Confidence 78999999999987765
No 283
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=96.00 E-value=0.0023 Score=45.97 Aligned_cols=18 Identities=28% Similarity=0.451 Sum_probs=16.0
Q ss_pred CCCCChhHHHHHHHHHhC
Q 040894 1 GPGSGKSTQCSKIAKHLG 18 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~ 18 (169)
|+||||||+++.|+..+.
T Consensus 183 ~sGsGKSTll~~l~~~~~ 200 (361)
T 2gza_A 183 ETGSGKTTLMKALMQEIP 200 (361)
T ss_dssp SSSSCHHHHHHHHHTTSC
T ss_pred CCCCCHHHHHHHHHhcCC
Confidence 689999999999988764
No 284
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=96.00 E-value=0.0038 Score=44.12 Aligned_cols=25 Identities=12% Similarity=-0.092 Sum_probs=20.9
Q ss_pred CCCCChhHHHHHHHHHhCCceechh
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHLSAG 25 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i~~d 25 (169)
|+|+||||+++.+++..+..+++..
T Consensus 39 ~~G~GKT~Ll~~~~~~~~~~~~~~~ 63 (350)
T 2qen_A 39 IRRVGKSSLLRAFLNERPGILIDCR 63 (350)
T ss_dssp CTTSSHHHHHHHHHHHSSEEEEEHH
T ss_pred CCcCCHHHHHHHHHHHcCcEEEEee
Confidence 6899999999999998876666653
No 285
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=95.99 E-value=0.0013 Score=47.17 Aligned_cols=17 Identities=35% Similarity=0.274 Sum_probs=14.8
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
|+||||||+++.|+--.
T Consensus 39 pnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 39 PSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp SCHHHHHHHHHHHHTSS
T ss_pred CCCCcHHHHHHHHhCCC
Confidence 78999999999998643
No 286
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=95.97 E-value=0.0022 Score=45.24 Aligned_cols=17 Identities=18% Similarity=0.169 Sum_probs=16.2
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
|||+|||++++.+++.+
T Consensus 53 pPGTGKT~~v~~v~~~L 69 (318)
T 3te6_A 53 ADDSTKFQLVNDVMDEL 69 (318)
T ss_dssp CCSHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 79999999999999988
No 287
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=95.93 E-value=0.0036 Score=49.37 Aligned_cols=22 Identities=32% Similarity=0.519 Sum_probs=19.5
Q ss_pred CCCCChhHHHHHHHHHhCCcee
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHL 22 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i 22 (169)
|||+|||++|+.+++.++.+++
T Consensus 496 ~~GtGKT~la~~la~~l~~~~~ 517 (758)
T 1r6b_X 496 PTGVGKTEVTVQLSKALGIELL 517 (758)
T ss_dssp STTSSHHHHHHHHHHHHTCEEE
T ss_pred CCCCcHHHHHHHHHHHhcCCEE
Confidence 7999999999999999986654
No 288
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=95.93 E-value=0.0038 Score=44.45 Aligned_cols=17 Identities=41% Similarity=0.567 Sum_probs=15.0
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
||||||||+.+.|+..+
T Consensus 63 ~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 63 VPGVGKSTTIDALGSLL 79 (337)
T ss_dssp CTTSCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhh
Confidence 79999999999998654
No 289
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=95.91 E-value=0.0038 Score=46.64 Aligned_cols=17 Identities=35% Similarity=0.565 Sum_probs=15.4
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
|+||||||+++.|+..+
T Consensus 301 pNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 301 VNGVGKTTTIGKLARQF 317 (503)
T ss_dssp CTTSSHHHHHHHHHHHH
T ss_pred CCcccHHHHHHHHHHHh
Confidence 68999999999999866
No 290
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=95.86 E-value=0.0041 Score=40.28 Aligned_cols=16 Identities=31% Similarity=0.540 Sum_probs=14.3
Q ss_pred CCCCChhHHHHHHHHH
Q 040894 1 GPGSGKSTQCSKIAKH 16 (169)
Q Consensus 1 ~~GsGKsTla~~La~~ 16 (169)
++||||||+.+.|+..
T Consensus 37 ~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 37 DSGVGKSNLLSRFTRN 52 (191)
T ss_dssp CTTSSHHHHHHHHHHS
T ss_pred cCCCCHHHHHHHHhcC
Confidence 6899999999999874
No 291
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=95.86 E-value=0.0041 Score=43.44 Aligned_cols=17 Identities=35% Similarity=0.718 Sum_probs=15.9
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
|||+||||+++.+++.+
T Consensus 46 ~~G~GKt~la~~l~~~l 62 (319)
T 2chq_A 46 PPGTGKTATAIALARDL 62 (319)
T ss_dssp SSSSSHHHHHHHHHHHH
T ss_pred cCCcCHHHHHHHHHHHh
Confidence 79999999999999986
No 292
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=95.84 E-value=0.0017 Score=45.55 Aligned_cols=17 Identities=29% Similarity=0.362 Sum_probs=15.1
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
|+||||||+++.|+.-+
T Consensus 88 ~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 88 PSGAGKSTILRLLFRFY 104 (306)
T ss_dssp SSCHHHHHHHHHHTTSS
T ss_pred CCCchHHHHHHHHHcCC
Confidence 68999999999997755
No 293
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=95.84 E-value=0.0036 Score=44.81 Aligned_cols=17 Identities=29% Similarity=0.360 Sum_probs=15.6
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
||||||||+++.++-..
T Consensus 139 ~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 139 EFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp STTSSHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 79999999999998876
No 294
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=95.83 E-value=0.0026 Score=45.19 Aligned_cols=18 Identities=39% Similarity=0.599 Sum_probs=15.8
Q ss_pred CCCCChhHHHHHHHHHhC
Q 040894 1 GPGSGKSTQCSKIAKHLG 18 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~ 18 (169)
|+||||||+++.|+..+.
T Consensus 179 ~~GsGKTTll~~l~g~~~ 196 (330)
T 2pt7_A 179 GTGSGKTTYIKSIMEFIP 196 (330)
T ss_dssp STTSCHHHHHHHGGGGSC
T ss_pred CCCCCHHHHHHHHhCCCc
Confidence 689999999999988663
No 295
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=95.81 E-value=0.0037 Score=46.44 Aligned_cols=17 Identities=18% Similarity=0.368 Sum_probs=14.9
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
|+||||||+++.|+...
T Consensus 146 pnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 146 GSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp STTSSHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHhCcc
Confidence 68999999999998754
No 296
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=95.78 E-value=0.004 Score=43.63 Aligned_cols=16 Identities=31% Similarity=0.389 Sum_probs=14.4
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
|+||||||+.+.|+ ..
T Consensus 173 ~sG~GKSTLln~l~-~~ 188 (302)
T 2yv5_A 173 PSGVGKSSILSRLT-GE 188 (302)
T ss_dssp STTSSHHHHHHHHH-SC
T ss_pred CCCCCHHHHHHHHH-Hh
Confidence 68999999999998 54
No 297
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.77 E-value=0.0048 Score=43.18 Aligned_cols=17 Identities=41% Similarity=0.591 Sum_probs=15.9
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
|||+||||+++.+++.+
T Consensus 50 ~~G~GKt~la~~l~~~l 66 (323)
T 1sxj_B 50 MPGIGKTTSVHCLAHEL 66 (323)
T ss_dssp STTSSHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHh
Confidence 79999999999999986
No 298
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=95.77 E-value=0.0047 Score=49.40 Aligned_cols=17 Identities=29% Similarity=0.620 Sum_probs=16.2
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
|||+||||+++.|++.+
T Consensus 199 ~pG~GKT~la~~la~~l 215 (854)
T 1qvr_A 199 EPGVGKTAIVEGLAQRI 215 (854)
T ss_dssp CTTSCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 79999999999999987
No 299
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=95.77 E-value=0.0048 Score=45.43 Aligned_cols=17 Identities=41% Similarity=0.515 Sum_probs=15.4
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
|+||||||++..||..+
T Consensus 105 ~~GsGKTTt~~kLA~~l 121 (433)
T 3kl4_A 105 VQGSGKTTTAGKLAYFY 121 (433)
T ss_dssp CTTSCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 68999999999999776
No 300
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=95.73 E-value=0.0052 Score=45.06 Aligned_cols=18 Identities=39% Similarity=0.346 Sum_probs=16.1
Q ss_pred CCCCChhHHHHHHHHHhC
Q 040894 1 GPGSGKSTQCSKIAKHLG 18 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~ 18 (169)
|+||||||+++.+...++
T Consensus 175 pnGSGKTTlL~allg~l~ 192 (418)
T 1p9r_A 175 PTGSGKSTTLYAGLQELN 192 (418)
T ss_dssp STTSCHHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHhhcC
Confidence 789999999999988774
No 301
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=95.72 E-value=0.0054 Score=41.03 Aligned_cols=17 Identities=18% Similarity=0.129 Sum_probs=15.1
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
||||||||++-.++.++
T Consensus 20 ~mGsGKTT~ll~~~~r~ 36 (223)
T 2b8t_A 20 PMFAGKTAELIRRLHRL 36 (223)
T ss_dssp STTSCHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHH
Confidence 57999999999988877
No 302
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=95.67 E-value=0.0063 Score=39.00 Aligned_cols=18 Identities=44% Similarity=0.468 Sum_probs=15.5
Q ss_pred CCCCChhHHHHHHHHHhC
Q 040894 1 GPGSGKSTQCSKIAKHLG 18 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~ 18 (169)
|.||||||+++.|.--++
T Consensus 34 ~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 34 ANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp CTTSSHHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHHHc
Confidence 689999999999977654
No 303
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=95.67 E-value=0.003 Score=42.42 Aligned_cols=17 Identities=41% Similarity=0.630 Sum_probs=15.3
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
|+||||||+++.++--+
T Consensus 35 pnGsGKSTll~~i~g~~ 51 (227)
T 1qhl_A 35 GNGAGKSTTMAAFVTAL 51 (227)
T ss_dssp CCSHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHhccc
Confidence 78999999999998765
No 304
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=95.67 E-value=0.0053 Score=39.94 Aligned_cols=16 Identities=31% Similarity=0.540 Sum_probs=14.3
Q ss_pred CCCCChhHHHHHHHHH
Q 040894 1 GPGSGKSTQCSKIAKH 16 (169)
Q Consensus 1 ~~GsGKsTla~~La~~ 16 (169)
++||||||+.+.|+..
T Consensus 13 ~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 13 DSGVGKSNLLSRFTRN 28 (199)
T ss_dssp STTSSHHHHHHHHHHS
T ss_pred cCCCCHHHHHHHHhcC
Confidence 6899999999999864
No 305
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=95.66 E-value=0.0032 Score=47.24 Aligned_cols=18 Identities=22% Similarity=0.294 Sum_probs=16.6
Q ss_pred CCCCChhHHHHHHHHHhC
Q 040894 1 GPGSGKSTQCSKIAKHLG 18 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~ 18 (169)
|||+|||++|+.|++.++
T Consensus 49 pPGtGKT~LAraLa~~l~ 66 (500)
T 3nbx_X 49 PPGIAKSLIARRLKFAFQ 66 (500)
T ss_dssp CSSSSHHHHHHHGGGGBS
T ss_pred CchHHHHHHHHHHHHHHh
Confidence 799999999999999774
No 306
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=95.63 E-value=0.0058 Score=43.83 Aligned_cols=17 Identities=24% Similarity=0.188 Sum_probs=15.2
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
||||||||++..++..+
T Consensus 69 ppGsGKSTLal~la~~~ 85 (356)
T 3hr8_A 69 QESSGKTTLALHAIAEA 85 (356)
T ss_dssp STTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 79999999999998764
No 307
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=95.62 E-value=0.0049 Score=47.38 Aligned_cols=18 Identities=39% Similarity=0.540 Sum_probs=16.6
Q ss_pred CCCCChhHHHHHHHHHhC
Q 040894 1 GPGSGKSTQCSKIAKHLG 18 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~ 18 (169)
|||+||||+++.++..++
T Consensus 68 p~GtGKTtlar~ia~~l~ 85 (604)
T 3k1j_A 68 EPGTGKSMLGQAMAELLP 85 (604)
T ss_dssp CTTSSHHHHHHHHHHTSC
T ss_pred CCCCCHHHHHHHHhccCC
Confidence 799999999999999774
No 308
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=95.61 E-value=0.0065 Score=41.73 Aligned_cols=19 Identities=26% Similarity=0.408 Sum_probs=16.9
Q ss_pred CCCCChhHHHHHHHHHhCC
Q 040894 1 GPGSGKSTQCSKIAKHLGF 19 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~ 19 (169)
|||+|||+++..||..++.
T Consensus 112 ppgtGKt~~a~ala~~~~l 130 (267)
T 1u0j_A 112 PATTGKTNIAEAIAHTVPF 130 (267)
T ss_dssp STTSSHHHHHHHHHHHSSC
T ss_pred CCCCCHHHHHHHHHhhhcc
Confidence 8999999999999997654
No 309
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=95.61 E-value=0.0059 Score=43.14 Aligned_cols=24 Identities=21% Similarity=0.277 Sum_probs=18.2
Q ss_pred CCCCChhHHHHHHHHHhC--Cceech
Q 040894 1 GPGSGKSTQCSKIAKHLG--FRHLSA 24 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~--~~~i~~ 24 (169)
|||+||||+|..++...+ ..+++.
T Consensus 131 pPGsGKTtLAlqlA~~~G~~VlyIs~ 156 (331)
T 2vhj_A 131 KGNSGKTPLVHALGEALGGKDKYATV 156 (331)
T ss_dssp SCSSSHHHHHHHHHHHHHTTSCCEEE
T ss_pred CCCCCHHHHHHHHHHhCCCCEEEEEe
Confidence 799999999999987643 334454
No 310
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=95.60 E-value=0.0062 Score=43.57 Aligned_cols=17 Identities=47% Similarity=0.589 Sum_probs=15.1
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
+|||||||+.+.|...+
T Consensus 82 ~pgaGKSTLln~L~~~~ 98 (349)
T 2www_A 82 PPGAGKSTFIEYFGKML 98 (349)
T ss_dssp CTTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 69999999999998754
No 311
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=95.59 E-value=0.0053 Score=44.06 Aligned_cols=17 Identities=24% Similarity=0.255 Sum_probs=14.6
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
||||||||+.+.|+-..
T Consensus 223 ~sG~GKSTLln~L~g~~ 239 (358)
T 2rcn_A 223 QSGVGKSSLLNALLGLQ 239 (358)
T ss_dssp CTTSSHHHHHHHHHCCS
T ss_pred CCCccHHHHHHHHhccc
Confidence 79999999999997543
No 312
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=95.59 E-value=0.0072 Score=42.87 Aligned_cols=20 Identities=20% Similarity=0.273 Sum_probs=18.0
Q ss_pred CCCCChhHHHHHHHHHhCCc
Q 040894 1 GPGSGKSTQCSKIAKHLGFR 20 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~ 20 (169)
|||+||||+|+.+++.+...
T Consensus 32 ~~G~GKt~~a~~la~~l~~~ 51 (334)
T 1a5t_A 32 LPGMGDDALIYALSRYLLCQ 51 (334)
T ss_dssp CTTSCHHHHHHHHHHHHTCS
T ss_pred CCCchHHHHHHHHHHHHhCC
Confidence 79999999999999998653
No 313
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=95.59 E-value=0.0038 Score=43.70 Aligned_cols=16 Identities=31% Similarity=0.297 Sum_probs=14.1
Q ss_pred CCCCChhHHHHHHHHH
Q 040894 1 GPGSGKSTQCSKIAKH 16 (169)
Q Consensus 1 ~~GsGKsTla~~La~~ 16 (169)
|+||||||+.+.|+..
T Consensus 177 ~sG~GKSTll~~l~g~ 192 (301)
T 1u0l_A 177 LSGVGKSSLLNAINPG 192 (301)
T ss_dssp STTSSHHHHHHHHSTT
T ss_pred CCCCcHHHHHHHhccc
Confidence 7999999999999653
No 314
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=95.54 E-value=0.0067 Score=42.88 Aligned_cols=17 Identities=35% Similarity=0.475 Sum_probs=15.3
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
|+||||||++..||..+
T Consensus 113 ~~G~GKTT~~~~LA~~l 129 (320)
T 1zu4_A 113 VNGTGKTTSLAKMANYY 129 (320)
T ss_dssp STTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 58999999999998876
No 315
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=95.50 E-value=0.0068 Score=43.92 Aligned_cols=17 Identities=29% Similarity=0.327 Sum_probs=15.5
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
|||+||||+++.+++.+
T Consensus 60 ~~G~GKT~L~~~~~~~~ 76 (412)
T 1w5s_A 60 RVGIGKTTLAKFTVKRV 76 (412)
T ss_dssp CCSSSHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHH
Confidence 79999999999998876
No 316
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.46 E-value=0.0073 Score=44.55 Aligned_cols=17 Identities=41% Similarity=0.587 Sum_probs=15.4
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
++||||||++..||..+
T Consensus 108 ~~G~GKTTt~~kLA~~l 124 (443)
T 3dm5_A 108 IQGSGKTTTVAKLARYF 124 (443)
T ss_dssp CTTSSHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHH
Confidence 68999999999999876
No 317
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=95.40 E-value=0.0078 Score=43.07 Aligned_cols=17 Identities=24% Similarity=0.212 Sum_probs=14.8
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
||||||||++..++...
T Consensus 69 ~pGsGKTtLal~la~~~ 85 (349)
T 2zr9_A 69 PESSGKTTVALHAVANA 85 (349)
T ss_dssp STTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 79999999999988654
No 318
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=95.39 E-value=0.011 Score=41.90 Aligned_cols=19 Identities=21% Similarity=0.107 Sum_probs=16.7
Q ss_pred CCCCChhHHHHHHHHHhCC
Q 040894 1 GPGSGKSTQCSKIAKHLGF 19 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~ 19 (169)
|+|+||||+++.+++..+.
T Consensus 38 ~~G~GKT~L~~~~~~~~~~ 56 (357)
T 2fna_A 38 LRRTGKSSIIKIGINELNL 56 (357)
T ss_dssp STTSSHHHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHhcCC
Confidence 6899999999999988753
No 319
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=95.39 E-value=0.009 Score=39.45 Aligned_cols=17 Identities=24% Similarity=0.395 Sum_probs=15.1
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
++||||||++..|+..+
T Consensus 38 ~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 38 AIGSGKTLLIERTIERI 54 (221)
T ss_dssp CTTSCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 48999999999998875
No 320
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=95.38 E-value=0.0067 Score=44.25 Aligned_cols=16 Identities=31% Similarity=0.436 Sum_probs=13.7
Q ss_pred CCCCChhHHHHHHHHH
Q 040894 1 GPGSGKSTQCSKIAKH 16 (169)
Q Consensus 1 ~~GsGKsTla~~La~~ 16 (169)
||||||||++..|+-.
T Consensus 186 ~sGsGKTTLl~~la~~ 201 (400)
T 3lda_A 186 EFRTGKSQLCHTLAVT 201 (400)
T ss_dssp STTSSHHHHHHHHHHH
T ss_pred CCCCChHHHHHHHHHH
Confidence 7999999999987643
No 321
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=95.37 E-value=0.0074 Score=37.98 Aligned_cols=15 Identities=33% Similarity=0.490 Sum_probs=13.6
Q ss_pred CCCCChhHHHHHHHH
Q 040894 1 GPGSGKSTQCSKIAK 15 (169)
Q Consensus 1 ~~GsGKsTla~~La~ 15 (169)
++|+||||+.+.|..
T Consensus 11 ~~gvGKStL~~~l~~ 25 (165)
T 2wji_A 11 NPNVGKSTIFNALTG 25 (165)
T ss_dssp STTSSHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHhC
Confidence 589999999999975
No 322
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=95.37 E-value=0.0079 Score=44.62 Aligned_cols=17 Identities=29% Similarity=0.380 Sum_probs=15.6
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
||||||||++..+++.+
T Consensus 53 ~aGTGKT~ll~~~~~~l 69 (459)
T 3upu_A 53 PAGTGATTLTKFIIEAL 69 (459)
T ss_dssp CTTSCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 69999999999998877
No 323
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=95.32 E-value=0.0067 Score=42.78 Aligned_cols=16 Identities=31% Similarity=0.320 Sum_probs=14.1
Q ss_pred CCCCChhHHHHHHHHH
Q 040894 1 GPGSGKSTQCSKIAKH 16 (169)
Q Consensus 1 ~~GsGKsTla~~La~~ 16 (169)
+.||||||+.+.|...
T Consensus 12 ~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 12 FLGAGKTTLLRHILNE 27 (318)
T ss_dssp SSSSSCHHHHHHHHHS
T ss_pred cCCCCHHHHHHHHHhh
Confidence 5899999999999854
No 324
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=95.31 E-value=0.0086 Score=44.22 Aligned_cols=18 Identities=33% Similarity=0.438 Sum_probs=16.4
Q ss_pred CCCCChhHHHHHHHHHhC
Q 040894 1 GPGSGKSTQCSKIAKHLG 18 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~ 18 (169)
|+||||||+++.|+....
T Consensus 165 ~sGsGKSTLl~~Iag~~~ 182 (438)
T 2dpy_A 165 GSGVGKSVLLGMMARYTR 182 (438)
T ss_dssp CTTSSHHHHHHHHHHHSC
T ss_pred CCCCCHHHHHHHHhcccC
Confidence 789999999999999774
No 325
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=95.28 E-value=0.0074 Score=45.75 Aligned_cols=17 Identities=41% Similarity=0.534 Sum_probs=14.8
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
|+||||||+++.|+-.+
T Consensus 55 ~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 55 PNGTGKSTAVKILAGQL 71 (538)
T ss_dssp CTTSSHHHHHHHHHTSS
T ss_pred CCCCCHHHHHHHHhCCC
Confidence 68999999999998644
No 326
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=95.27 E-value=0.0094 Score=40.49 Aligned_cols=17 Identities=35% Similarity=0.536 Sum_probs=14.9
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
.+||||||++..|+..+
T Consensus 22 kgGvGKTTl~~~La~~l 38 (262)
T 1yrb_A 22 TAGSGKTTLTGEFGRYL 38 (262)
T ss_dssp STTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 47999999999999765
No 327
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=95.25 E-value=0.0094 Score=42.62 Aligned_cols=18 Identities=39% Similarity=0.484 Sum_probs=16.3
Q ss_pred CCCCChhHHHHHHHHHhC
Q 040894 1 GPGSGKSTQCSKIAKHLG 18 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~ 18 (169)
|+||||||+.+.|+....
T Consensus 79 ~nGaGKTTLl~~I~g~~~ 96 (347)
T 2obl_A 79 GSGVGKSTLLGMICNGAS 96 (347)
T ss_dssp CTTSSHHHHHHHHHHHSC
T ss_pred CCCCCHHHHHHHHhcCCC
Confidence 689999999999999774
No 328
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=95.25 E-value=0.01 Score=38.68 Aligned_cols=17 Identities=24% Similarity=0.122 Sum_probs=15.2
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
|+||||||.+-.++.++
T Consensus 16 ~mgsGKTT~ll~~a~r~ 32 (191)
T 1xx6_A 16 PMYSGKSEELIRRIRRA 32 (191)
T ss_dssp STTSSHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHH
Confidence 56999999999998887
No 329
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=95.25 E-value=0.007 Score=44.43 Aligned_cols=16 Identities=31% Similarity=0.364 Sum_probs=14.1
Q ss_pred CCCCChhHHHHHHHHH
Q 040894 1 GPGSGKSTQCSKIAKH 16 (169)
Q Consensus 1 ~~GsGKsTla~~La~~ 16 (169)
|+||||||+.+.|+..
T Consensus 50 ~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 50 ETGLGKSTLMDTLFNT 65 (427)
T ss_dssp STTSSSHHHHHHHHTS
T ss_pred CCCCCHHHHHHHHhCc
Confidence 6899999999999754
No 330
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=95.24 E-value=0.0065 Score=45.73 Aligned_cols=18 Identities=28% Similarity=0.331 Sum_probs=15.7
Q ss_pred CCCCChhHHHHHHHHHhC
Q 040894 1 GPGSGKSTQCSKIAKHLG 18 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~ 18 (169)
|+||||||+++.|+..+.
T Consensus 268 ptGSGKTTlL~aL~~~i~ 285 (511)
T 2oap_1 268 ETASGKTTTLNAIMMFIP 285 (511)
T ss_dssp STTSSHHHHHHHHGGGSC
T ss_pred CCCCCHHHHHHHHHhhCC
Confidence 789999999999987663
No 331
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=95.21 E-value=0.0087 Score=44.11 Aligned_cols=17 Identities=41% Similarity=0.612 Sum_probs=15.4
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
++||||||++..|+..+
T Consensus 107 ~~GvGKTTla~~La~~l 123 (432)
T 2v3c_C 107 IQGSGKTTTAAKLARYI 123 (432)
T ss_dssp CSSSSTTHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 58999999999999876
No 332
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=95.17 E-value=0.0086 Score=43.83 Aligned_cols=16 Identities=31% Similarity=0.372 Sum_probs=14.4
Q ss_pred CCCCChhHHHHHHHHH
Q 040894 1 GPGSGKSTQCSKIAKH 16 (169)
Q Consensus 1 ~~GsGKsTla~~La~~ 16 (169)
|+||||||+.+.|+-.
T Consensus 77 ~nGaGKSTLln~L~Gl 92 (413)
T 1tq4_A 77 ETGSGKSSFINTLRGI 92 (413)
T ss_dssp CTTSSHHHHHHHHHTC
T ss_pred CCCCcHHHHHHHHhCC
Confidence 6999999999999873
No 333
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=95.17 E-value=0.01 Score=41.37 Aligned_cols=17 Identities=41% Similarity=0.466 Sum_probs=15.3
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
++||||||++..||..+
T Consensus 106 ~~G~GKTT~~~~la~~~ 122 (295)
T 1ls1_A 106 LQGSGKTTTAAKLALYY 122 (295)
T ss_dssp CTTTTHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 58999999999998876
No 334
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=95.17 E-value=0.0086 Score=44.70 Aligned_cols=17 Identities=41% Similarity=0.616 Sum_probs=15.2
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
|+||||||+++.|+--+
T Consensus 37 ~nGsGKSTLl~~l~Gl~ 53 (483)
T 3euj_A 37 GNGAGKSTTMAGFVTAL 53 (483)
T ss_dssp CTTSSHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHhcCC
Confidence 78999999999998755
No 335
>3kfv_A Tight junction protein ZO-3; structural genomics consortium, SGC, cell junction, cell membrane, membrane, SH3 domain; 2.80A {Homo sapiens}
Probab=95.15 E-value=0.087 Score=36.97 Aligned_cols=86 Identities=9% Similarity=0.155 Sum_probs=45.6
Q ss_pred CCChhHHHHHHHHHhCCce-echhHHHHHHHhcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCCceEEEeCCCCC
Q 040894 3 GSGKSTQCSKIAKHLGFRH-LSAGDLLEAEAESGSNDGKMIREYKKEGKLVPSEIIVKLLQKAMQESQNKNFVIDGFPRN 81 (169)
Q Consensus 3 GsGKsTla~~La~~~~~~~-i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~d~~~~~ 81 (169)
|.||+|+.+.|-+.+.-.+ .... + ... ...+.++ ....++..+.. |..+|+|--
T Consensus 152 GP~k~~l~~~L~~~~P~~F~~~v~-~-~r~--------------i~~~~fi----s~~~V~~vl~~--Gk~~ILDId--- 206 (308)
T 3kfv_A 152 GPVADIAMQKLTAEMPDQFEIAET-V-SRT--------------DSPSKII----KLDTVRVIAEK--DKHALLDVT--- 206 (308)
T ss_dssp STTHHHHHHHHHHHCTTTEEECCC-C-----------------------CC----CHHHHHHHHHT--TCEEEECCC---
T ss_pred CccHHHHHHHHHHhCccccccccc-c-ccc--------------ccCCCee----cHHHHHHHHHC--CCcEEEEEC---
Confidence 6689999998877764221 2211 0 000 1223333 25566666665 899999853
Q ss_pred hHHHHHHHhhcCCCCCEEEEEEcC-HHHHHHHHhcC
Q 040894 82 EENLSAAENILKIEPNAVLVFDCS-EEEMTRRILSR 116 (169)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~i~l~~~-~~~~~~R~~~R 116 (169)
..-+..+.. ....| ++||+..| .+++.+| ..|
T Consensus 207 ~QGa~~lk~-~~~~p-i~IFI~PPS~eeL~~r-r~R 239 (308)
T 3kfv_A 207 PSAIERLNY-VQYYP-IVVFFIPESRPALKAL-RQW 239 (308)
T ss_dssp HHHHHHHHH-TTCCC-EEEEEEESCHHHHHHH-HHH
T ss_pred HHHHHHHHh-cCCCC-EEEEEeCCCHHHHHHH-Hhc
Confidence 333333443 44455 67777775 4555554 444
No 336
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=95.13 E-value=0.01 Score=41.71 Aligned_cols=23 Identities=30% Similarity=0.501 Sum_probs=19.0
Q ss_pred CCCCChhHHHHHHHHHhCCceech
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHLSA 24 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i~~ 24 (169)
++|+||||+|..|.++ |+..+.-
T Consensus 152 ~sG~GKSt~a~~l~~~-g~~lv~d 174 (314)
T 1ko7_A 152 DSGIGKSETALELIKR-GHRLVAD 174 (314)
T ss_dssp STTSSHHHHHHHHHHT-TCEEEES
T ss_pred CCCCCHHHHHHHHHhc-CCceecC
Confidence 6899999999999886 7766653
No 337
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=95.12 E-value=0.01 Score=41.53 Aligned_cols=17 Identities=35% Similarity=0.501 Sum_probs=15.3
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
++|+||||++..||..+
T Consensus 106 ~~G~GKTT~~~~la~~~ 122 (297)
T 1j8m_F 106 VQGTGKTTTAGKLAYFY 122 (297)
T ss_dssp SSCSSTTHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 58999999999999776
No 338
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=95.09 E-value=0.008 Score=38.55 Aligned_cols=15 Identities=40% Similarity=0.600 Sum_probs=13.5
Q ss_pred CCCCChhHHHHHHHH
Q 040894 1 GPGSGKSTQCSKIAK 15 (169)
Q Consensus 1 ~~GsGKsTla~~La~ 15 (169)
++|+||||+.+.|+.
T Consensus 10 ~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 10 NTGSGKTTLLQQLMK 24 (184)
T ss_dssp CTTSSHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHhc
Confidence 589999999999975
No 339
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=95.07 E-value=0.0092 Score=45.89 Aligned_cols=17 Identities=35% Similarity=0.329 Sum_probs=14.9
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
|+||||||+.+.|+-.+
T Consensus 111 pNGaGKSTLLkiL~Gll 127 (608)
T 3j16_B 111 TNGIGKSTALKILAGKQ 127 (608)
T ss_dssp CTTSSHHHHHHHHHTSS
T ss_pred CCCChHHHHHHHHhcCC
Confidence 78999999999998644
No 340
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=95.06 E-value=0.012 Score=42.20 Aligned_cols=17 Identities=47% Similarity=0.683 Sum_probs=15.3
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
+||+||||++..|+..+
T Consensus 87 ~~G~GKSTl~~~L~~~l 103 (355)
T 3p32_A 87 VPGVGKSTAIEALGMHL 103 (355)
T ss_dssp CTTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 58999999999998876
No 341
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=95.03 E-value=0.012 Score=36.48 Aligned_cols=16 Identities=31% Similarity=0.544 Sum_probs=14.0
Q ss_pred CCCCChhHHHHHHHHH
Q 040894 1 GPGSGKSTQCSKIAKH 16 (169)
Q Consensus 1 ~~GsGKsTla~~La~~ 16 (169)
++||||||+.+.|...
T Consensus 9 ~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 9 RPNVGKSSLFNRLLKK 24 (161)
T ss_dssp CTTSSHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHhCC
Confidence 5899999999999764
No 342
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=95.03 E-value=0.012 Score=46.36 Aligned_cols=17 Identities=24% Similarity=0.392 Sum_probs=16.0
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
|||+||||+++.|++.+
T Consensus 215 ~~GtGKT~la~~la~~l 231 (758)
T 1r6b_X 215 ESGVGKTAIAEGLAWRI 231 (758)
T ss_dssp CTTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 79999999999999987
No 343
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=95.02 E-value=0.0091 Score=41.96 Aligned_cols=24 Identities=17% Similarity=0.224 Sum_probs=18.9
Q ss_pred CCCCChhHHHHHHHHHhCCceechh
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHLSAG 25 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i~~d 25 (169)
+||+||||+|-.|.++ |+..+.-|
T Consensus 155 ~sG~GKStlal~l~~~-G~~lv~DD 178 (312)
T 1knx_A 155 RSGIGKSECALDLINK-NHLFVGDD 178 (312)
T ss_dssp SSSSSHHHHHHHHHTT-TCEEEEEE
T ss_pred CCCCCHHHHHHHHHHc-CCEEEeCC
Confidence 6899999999999774 77666533
No 344
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=95.02 E-value=0.0079 Score=45.58 Aligned_cols=17 Identities=29% Similarity=0.388 Sum_probs=14.8
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
|+||||||+.+.|+-.+
T Consensus 33 pNGaGKSTLlkiL~Gl~ 49 (538)
T 3ozx_A 33 KNGVGKTTVLKILAGEI 49 (538)
T ss_dssp CTTSSHHHHHHHHTTSS
T ss_pred CCCCcHHHHHHHHhcCC
Confidence 78999999999997644
No 345
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=94.99 E-value=0.012 Score=46.36 Aligned_cols=17 Identities=24% Similarity=0.444 Sum_probs=16.1
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
|||+|||++|+.+++.+
T Consensus 529 p~GtGKT~lA~ala~~l 545 (758)
T 3pxi_A 529 PTGVGKTELARALAESI 545 (758)
T ss_dssp CTTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 79999999999999987
No 346
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=94.98 E-value=0.012 Score=41.15 Aligned_cols=17 Identities=18% Similarity=0.274 Sum_probs=15.4
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
|||+|||++|+.+++..
T Consensus 33 e~GtGKt~lAr~i~~~~ 49 (304)
T 1ojl_A 33 DSGTGKELVARALHACS 49 (304)
T ss_dssp CTTSCHHHHHHHHHHHS
T ss_pred CCCchHHHHHHHHHHhC
Confidence 69999999999999854
No 347
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=94.97 E-value=0.0095 Score=45.58 Aligned_cols=17 Identities=35% Similarity=0.477 Sum_probs=15.3
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
|+||||||+++.|+..+
T Consensus 377 ~sGsGKSTll~~l~g~~ 393 (582)
T 3b5x_A 377 RSGSGKSTIANLFTRFY 393 (582)
T ss_pred CCCCCHHHHHHHHhcCC
Confidence 78999999999998765
No 348
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=94.94 E-value=0.013 Score=41.72 Aligned_cols=17 Identities=41% Similarity=0.522 Sum_probs=15.0
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
+||+||||+++.|+..+
T Consensus 64 ~~g~GKSTl~~~l~~~~ 80 (341)
T 2p67_A 64 TPGAGKSTFLEAFGMLL 80 (341)
T ss_dssp CTTSCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 68999999999998754
No 349
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=94.93 E-value=0.0085 Score=45.84 Aligned_cols=17 Identities=47% Similarity=0.561 Sum_probs=15.3
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
|+||||||+++.|+.-+
T Consensus 377 ~sGsGKSTLl~~l~g~~ 393 (582)
T 3b60_A 377 RSGSGKSTIASLITRFY 393 (582)
T ss_dssp CTTSSHHHHHHHHTTTT
T ss_pred CCCCCHHHHHHHHhhcc
Confidence 78999999999998765
No 350
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=94.93 E-value=0.012 Score=37.36 Aligned_cols=16 Identities=31% Similarity=0.495 Sum_probs=14.1
Q ss_pred CCCCChhHHHHHHHHH
Q 040894 1 GPGSGKSTQCSKIAKH 16 (169)
Q Consensus 1 ~~GsGKsTla~~La~~ 16 (169)
+||+||||+.+.|...
T Consensus 12 ~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 12 RPNAGKSSLLNALAGR 27 (172)
T ss_dssp STTSSHHHHHHHHHTS
T ss_pred CCCCCHHHHHHHHhCC
Confidence 5899999999999764
No 351
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=94.92 E-value=0.013 Score=39.26 Aligned_cols=15 Identities=33% Similarity=0.605 Sum_probs=13.0
Q ss_pred CCCCChhHHHHHHHH
Q 040894 1 GPGSGKSTQCSKIAK 15 (169)
Q Consensus 1 ~~GsGKsTla~~La~ 15 (169)
+||+||||+|-.++.
T Consensus 38 ~pG~GKT~l~l~~~~ 52 (251)
T 2zts_A 38 GTGTGKTTFAAQFIY 52 (251)
T ss_dssp CTTSSHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH
Confidence 699999999988754
No 352
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=94.91 E-value=0.013 Score=36.34 Aligned_cols=16 Identities=25% Similarity=0.405 Sum_probs=13.8
Q ss_pred CCCCChhHHHHHHHHH
Q 040894 1 GPGSGKSTQCSKIAKH 16 (169)
Q Consensus 1 ~~GsGKsTla~~La~~ 16 (169)
++||||||+.+.|...
T Consensus 11 ~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 11 AGGVGKSALTIQLIQN 26 (166)
T ss_dssp STTSSHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHhC
Confidence 4899999999999764
No 353
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=94.91 E-value=0.015 Score=39.01 Aligned_cols=21 Identities=19% Similarity=0.346 Sum_probs=18.9
Q ss_pred CCCEEEEEEcCHHHHHHHHhc
Q 040894 95 EPNAVLVFDCSEEEMTRRILS 115 (169)
Q Consensus 95 ~~~~~i~l~~~~~~~~~R~~~ 115 (169)
..|-++++|++|+.+.+|+..
T Consensus 155 ~a~~v~lvD~~p~~l~~rl~~ 175 (228)
T 2r8r_A 155 EAFDLVLIDLPPRELLERLRD 175 (228)
T ss_dssp TCSEEEEBCCCHHHHHHHHHT
T ss_pred hCCeEEEecCCHHHHHHHHHC
Confidence 577899999999999999876
No 354
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=94.91 E-value=0.012 Score=37.64 Aligned_cols=16 Identities=31% Similarity=0.468 Sum_probs=14.0
Q ss_pred CCCCChhHHHHHHHHH
Q 040894 1 GPGSGKSTQCSKIAKH 16 (169)
Q Consensus 1 ~~GsGKsTla~~La~~ 16 (169)
++|+||||+.+.|...
T Consensus 15 ~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 15 NPNVGKSTIFNALTGE 30 (188)
T ss_dssp STTSSHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHhCC
Confidence 5899999999999763
No 355
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=94.90 E-value=0.013 Score=36.54 Aligned_cols=16 Identities=25% Similarity=0.297 Sum_probs=13.9
Q ss_pred CCCCChhHHHHHHHHH
Q 040894 1 GPGSGKSTQCSKIAKH 16 (169)
Q Consensus 1 ~~GsGKsTla~~La~~ 16 (169)
++||||||+.+.|...
T Consensus 13 ~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 13 NGAVGKSSMIQRYCKG 28 (168)
T ss_dssp STTSSHHHHHHHHHHC
T ss_pred cCCCCHHHHHHHHHcC
Confidence 5899999999999763
No 356
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=94.87 E-value=0.014 Score=38.30 Aligned_cols=15 Identities=33% Similarity=0.587 Sum_probs=12.4
Q ss_pred CCCCChhHHHHHHHH
Q 040894 1 GPGSGKSTQCSKIAK 15 (169)
Q Consensus 1 ~~GsGKsTla~~La~ 15 (169)
+||||||++|..+..
T Consensus 13 ~pGsGKT~~a~~~~~ 27 (199)
T 2r2a_A 13 TPGSGKTLKMVSMMA 27 (199)
T ss_dssp CTTSSHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH
Confidence 699999999988643
No 357
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=94.85 E-value=0.014 Score=36.42 Aligned_cols=17 Identities=41% Similarity=0.415 Sum_probs=13.9
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
|.||||||+...+.--+
T Consensus 31 ~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 31 QNGSGKSSLLDAILVGL 47 (149)
T ss_dssp CTTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 68999999999886533
No 358
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=94.81 E-value=0.0059 Score=39.95 Aligned_cols=15 Identities=20% Similarity=0.399 Sum_probs=13.2
Q ss_pred CCCCChhHHHHHHHH
Q 040894 1 GPGSGKSTQCSKIAK 15 (169)
Q Consensus 1 ~~GsGKsTla~~La~ 15 (169)
++||||||+.+.|+.
T Consensus 34 ~~g~GKSTLl~~l~g 48 (210)
T 1pui_A 34 RSNAGKSSALNTLTN 48 (210)
T ss_dssp CTTSSHHHHHTTTCC
T ss_pred CCCCCHHHHHHHHhC
Confidence 689999999999864
No 359
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=94.80 E-value=0.015 Score=36.15 Aligned_cols=16 Identities=25% Similarity=0.318 Sum_probs=13.7
Q ss_pred CCCCChhHHHHHHHHH
Q 040894 1 GPGSGKSTQCSKIAKH 16 (169)
Q Consensus 1 ~~GsGKsTla~~La~~ 16 (169)
++||||||+.+.|...
T Consensus 11 ~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 11 SGGVGKSALTVQFVTG 26 (167)
T ss_dssp CTTSSHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHcC
Confidence 5899999999998753
No 360
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=94.80 E-value=0.0098 Score=45.76 Aligned_cols=17 Identities=35% Similarity=0.520 Sum_probs=14.8
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
|+||||||+++.|+-.+
T Consensus 125 ~NGsGKSTLlkiL~Gll 141 (607)
T 3bk7_A 125 PNGTGKTTAVKILAGQL 141 (607)
T ss_dssp CTTSSHHHHHHHHTTSS
T ss_pred CCCChHHHHHHHHhCCC
Confidence 68999999999997644
No 361
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=94.76 E-value=0.016 Score=38.34 Aligned_cols=17 Identities=35% Similarity=0.493 Sum_probs=15.0
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
.+||||||++..|+...
T Consensus 46 ~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 46 AIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp STTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 48999999999998875
No 362
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=94.76 E-value=0.015 Score=41.10 Aligned_cols=17 Identities=29% Similarity=0.626 Sum_probs=15.2
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
||||||||++..++...
T Consensus 115 ~~GsGKT~la~~la~~~ 131 (324)
T 2z43_A 115 EFGSGKTQLCHQLSVNV 131 (324)
T ss_dssp STTSSHHHHHHHHHHHT
T ss_pred CCCCCHhHHHHHHHHHH
Confidence 79999999999998764
No 363
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=94.76 E-value=0.012 Score=47.10 Aligned_cols=17 Identities=29% Similarity=0.450 Sum_probs=16.1
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
|||+|||++|+.|++.+
T Consensus 596 p~GtGKT~lA~~la~~~ 612 (854)
T 1qvr_A 596 PTGVGKTELAKTLAATL 612 (854)
T ss_dssp CSSSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 79999999999999987
No 364
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=94.74 E-value=0.01 Score=44.96 Aligned_cols=17 Identities=24% Similarity=0.329 Sum_probs=14.8
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
|+||||||+++.|+-.+
T Consensus 302 ~nGsGKSTLl~~l~Gl~ 318 (538)
T 3ozx_A 302 PNGIGKTTFARILVGEI 318 (538)
T ss_dssp CTTSSHHHHHHHHTTSS
T ss_pred CCCCCHHHHHHHHhCCC
Confidence 68999999999997644
No 365
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=94.71 E-value=0.016 Score=41.56 Aligned_cols=17 Identities=24% Similarity=0.227 Sum_probs=14.9
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
+|||||||+|..++...
T Consensus 71 ~pGsGKTtLal~la~~~ 87 (356)
T 1u94_A 71 PESSGKTTLTLQVIAAA 87 (356)
T ss_dssp STTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 69999999999988754
No 366
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=94.70 E-value=0.016 Score=41.37 Aligned_cols=16 Identities=13% Similarity=0.146 Sum_probs=14.8
Q ss_pred CCCCChhHHHHHHHHH
Q 040894 1 GPGSGKSTQCSKIAKH 16 (169)
Q Consensus 1 ~~GsGKsTla~~La~~ 16 (169)
||||||||++..++..
T Consensus 130 ~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 130 EFRTGKTQLSHTLCVT 145 (343)
T ss_dssp CTTCTHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHH
Confidence 7999999999999886
No 367
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=94.69 E-value=0.0093 Score=45.77 Aligned_cols=17 Identities=41% Similarity=0.425 Sum_probs=15.2
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
|+||||||+++.|+.-+
T Consensus 378 ~sGsGKSTLl~~l~g~~ 394 (595)
T 2yl4_A 378 PSGSGKSTVLSLLLRLY 394 (595)
T ss_dssp CTTSSSTHHHHHHTTSS
T ss_pred CCCCCHHHHHHHHhcCc
Confidence 78999999999998765
No 368
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=94.69 E-value=0.016 Score=44.33 Aligned_cols=17 Identities=47% Similarity=0.763 Sum_probs=15.0
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
|||+||||++..+...+
T Consensus 212 ~pGTGKTt~i~~l~~~l 228 (574)
T 3e1s_A 212 GPGTGKSTTTKAVADLA 228 (574)
T ss_dssp CTTSCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 79999999999988755
No 369
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=94.69 E-value=0.013 Score=45.01 Aligned_cols=17 Identities=29% Similarity=0.227 Sum_probs=14.8
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
|.||||||+++.|+-.+
T Consensus 390 ~NGsGKSTLlk~l~Gl~ 406 (607)
T 3bk7_A 390 PNGIGKTTFVKMLAGVE 406 (607)
T ss_dssp CTTSSHHHHHHHHHTSS
T ss_pred CCCCCHHHHHHHHhcCC
Confidence 68999999999998643
No 370
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=94.67 E-value=0.012 Score=41.26 Aligned_cols=15 Identities=33% Similarity=0.341 Sum_probs=13.2
Q ss_pred CCCCChhHHHHHHHH
Q 040894 1 GPGSGKSTQCSKIAK 15 (169)
Q Consensus 1 ~~GsGKsTla~~La~ 15 (169)
|+||||||+.+.|..
T Consensus 26 ~nG~GKSTLl~~L~g 40 (301)
T 2qnr_A 26 ESGLGKSTLINSLFL 40 (301)
T ss_dssp ETTSSHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHhC
Confidence 589999999999864
No 371
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=94.66 E-value=0.014 Score=44.28 Aligned_cols=17 Identities=29% Similarity=0.227 Sum_probs=14.8
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
|.||||||+++.|+-.+
T Consensus 320 ~NGsGKSTLlk~l~Gl~ 336 (538)
T 1yqt_A 320 PNGIGKTTFVKMLAGVE 336 (538)
T ss_dssp CTTSSHHHHHHHHHTSS
T ss_pred CCCCCHHHHHHHHhCCC
Confidence 68999999999998643
No 372
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=94.65 E-value=0.014 Score=44.13 Aligned_cols=13 Identities=23% Similarity=0.401 Sum_probs=11.9
Q ss_pred CCCCChhHHHHHH
Q 040894 1 GPGSGKSTQCSKI 13 (169)
Q Consensus 1 ~~GsGKsTla~~L 13 (169)
|+||||||+++.+
T Consensus 47 ~nGsGKSTL~~~~ 59 (525)
T 1tf7_A 47 TSGTGKTLFSIQF 59 (525)
T ss_dssp STTSSHHHHHHHH
T ss_pred CCCCCHHHHHHHH
Confidence 7999999999994
No 373
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=94.65 E-value=0.017 Score=37.14 Aligned_cols=16 Identities=19% Similarity=0.289 Sum_probs=14.1
Q ss_pred CCCCChhHHHHHHHHH
Q 040894 1 GPGSGKSTQCSKIAKH 16 (169)
Q Consensus 1 ~~GsGKsTla~~La~~ 16 (169)
++||||||+.+.|...
T Consensus 56 ~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 56 PQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CTTSSHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHhcC
Confidence 5899999999999764
No 374
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=94.64 E-value=0.017 Score=35.94 Aligned_cols=16 Identities=25% Similarity=0.270 Sum_probs=13.8
Q ss_pred CCCCChhHHHHHHHHH
Q 040894 1 GPGSGKSTQCSKIAKH 16 (169)
Q Consensus 1 ~~GsGKsTla~~La~~ 16 (169)
++||||||+.+.|...
T Consensus 12 ~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 12 SGGVGKSALTLQFMYD 27 (168)
T ss_dssp STTSSHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHhC
Confidence 4899999999999764
No 375
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=94.62 E-value=0.0044 Score=43.52 Aligned_cols=16 Identities=31% Similarity=0.434 Sum_probs=13.4
Q ss_pred CCCCChhHHHHHHHHH
Q 040894 1 GPGSGKSTQCSKIAKH 16 (169)
Q Consensus 1 ~~GsGKsTla~~La~~ 16 (169)
||||||||+.+.|+-.
T Consensus 181 ~sG~GKSTLln~L~g~ 196 (307)
T 1t9h_A 181 QSGVGKSSLLNAISPE 196 (307)
T ss_dssp SHHHHHHHHHHHHCC-
T ss_pred CCCCCHHHHHHHhccc
Confidence 6899999999999643
No 376
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=94.59 E-value=0.011 Score=45.47 Aligned_cols=17 Identities=29% Similarity=0.446 Sum_probs=15.1
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
|+||||||+++.|+.-+
T Consensus 389 ~sGsGKSTll~~l~g~~ 405 (598)
T 3qf4_B 389 PTGSGKTTIVNLLMRFY 405 (598)
T ss_dssp CTTSSTTHHHHHHTTSS
T ss_pred CCCCcHHHHHHHHhcCc
Confidence 78999999999997755
No 377
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=94.56 E-value=0.019 Score=42.25 Aligned_cols=17 Identities=41% Similarity=0.466 Sum_probs=15.6
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
++||||||++..||..+
T Consensus 106 ~~GsGKTT~~~~LA~~l 122 (425)
T 2ffh_A 106 LQGSGKTTTAAKLALYY 122 (425)
T ss_dssp CTTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 58999999999999877
No 378
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=94.53 E-value=0.015 Score=44.68 Aligned_cols=17 Identities=35% Similarity=0.448 Sum_probs=14.7
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
|+||||||+++.|+--.
T Consensus 386 ~NGsGKSTLlk~l~Gl~ 402 (608)
T 3j16_B 386 ENGTGKTTLIKLLAGAL 402 (608)
T ss_dssp CTTSSHHHHHHHHHTSS
T ss_pred CCCCcHHHHHHHHhcCC
Confidence 68999999999997643
No 379
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=94.51 E-value=0.019 Score=43.19 Aligned_cols=17 Identities=53% Similarity=0.702 Sum_probs=15.2
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
+|||||||++..|+..+
T Consensus 109 ~~GvGKTTl~~kLA~~l 125 (504)
T 2j37_W 109 LQGSGKTTTCSKLAYYY 125 (504)
T ss_dssp STTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 58999999999999766
No 380
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=94.50 E-value=0.016 Score=44.68 Aligned_cols=16 Identities=25% Similarity=0.285 Sum_probs=14.1
Q ss_pred CCCCChhHHHHHHHHH
Q 040894 1 GPGSGKSTQCSKIAKH 16 (169)
Q Consensus 1 ~~GsGKsTla~~La~~ 16 (169)
|+||||||+++.|+-.
T Consensus 53 ~nGsGKSTLL~~I~Gl 68 (608)
T 3szr_A 53 DQSSGKSSVLEALSGV 68 (608)
T ss_dssp CTTSCHHHHHHHHHSC
T ss_pred CCCChHHHHHHHHhCC
Confidence 6899999999999753
No 381
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=94.50 E-value=0.018 Score=36.21 Aligned_cols=15 Identities=40% Similarity=0.609 Sum_probs=13.2
Q ss_pred CCCCChhHHHHHHHH
Q 040894 1 GPGSGKSTQCSKIAK 15 (169)
Q Consensus 1 ~~GsGKsTla~~La~ 15 (169)
++|+||||+.+.|..
T Consensus 12 ~~~vGKSsl~~~l~~ 26 (175)
T 2nzj_A 12 DPGVGKTSLASLFAG 26 (175)
T ss_dssp CTTSSHHHHHHHHHC
T ss_pred CCCccHHHHHHHHhc
Confidence 589999999999865
No 382
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.50 E-value=0.018 Score=37.81 Aligned_cols=17 Identities=18% Similarity=0.231 Sum_probs=14.7
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
++||||||+.+.|....
T Consensus 20 ~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 20 PQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp STTSSHHHHHHHHHHSS
T ss_pred CCCCCHHHHHHHHhcCC
Confidence 58999999999998753
No 383
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=94.48 E-value=0.02 Score=36.14 Aligned_cols=16 Identities=25% Similarity=0.405 Sum_probs=13.7
Q ss_pred CCCCChhHHHHHHHHH
Q 040894 1 GPGSGKSTQCSKIAKH 16 (169)
Q Consensus 1 ~~GsGKsTla~~La~~ 16 (169)
++||||||+.+.|...
T Consensus 15 ~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 15 DGGVGKSSLMNRYVTN 30 (177)
T ss_dssp CTTSSHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHcC
Confidence 5899999999999753
No 384
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=94.48 E-value=0.02 Score=40.26 Aligned_cols=17 Identities=35% Similarity=0.476 Sum_probs=15.0
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
+||+||||++..++...
T Consensus 76 ~pG~GKTtl~l~ia~~~ 92 (315)
T 3bh0_A 76 RPSMGKTAFALKQAKNM 92 (315)
T ss_dssp CTTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 69999999999998765
No 385
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=94.47 E-value=0.018 Score=36.01 Aligned_cols=15 Identities=33% Similarity=0.435 Sum_probs=13.2
Q ss_pred CCCCChhHHHHHHHH
Q 040894 1 GPGSGKSTQCSKIAK 15 (169)
Q Consensus 1 ~~GsGKsTla~~La~ 15 (169)
++||||||+.+.|..
T Consensus 10 ~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 10 ESGVGKSTLAGTFGG 24 (169)
T ss_dssp STTSSHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHh
Confidence 589999999999964
No 386
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=94.45 E-value=0.02 Score=35.79 Aligned_cols=15 Identities=27% Similarity=0.412 Sum_probs=13.4
Q ss_pred CCCCChhHHHHHHHH
Q 040894 1 GPGSGKSTQCSKIAK 15 (169)
Q Consensus 1 ~~GsGKsTla~~La~ 15 (169)
++||||||+.+.|..
T Consensus 11 ~~~~GKssli~~l~~ 25 (170)
T 1g16_A 11 DSGVGKSCLLVRFVE 25 (170)
T ss_dssp STTSSHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHh
Confidence 589999999999975
No 387
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=94.45 E-value=0.02 Score=35.73 Aligned_cols=16 Identities=25% Similarity=0.389 Sum_probs=13.9
Q ss_pred CCCCChhHHHHHHHHH
Q 040894 1 GPGSGKSTQCSKIAKH 16 (169)
Q Consensus 1 ~~GsGKsTla~~La~~ 16 (169)
++||||||+.+.|...
T Consensus 14 ~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 14 DTGVGKSSIMWRFVED 29 (170)
T ss_dssp CTTSSHHHHHHHHHHS
T ss_pred cCCCCHHHHHHHHHcC
Confidence 5899999999999764
No 388
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.45 E-value=0.02 Score=35.73 Aligned_cols=16 Identities=19% Similarity=0.285 Sum_probs=13.6
Q ss_pred CCCCChhHHHHHHHHH
Q 040894 1 GPGSGKSTQCSKIAKH 16 (169)
Q Consensus 1 ~~GsGKsTla~~La~~ 16 (169)
++||||||+.+.|...
T Consensus 11 ~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 11 EAAVGKSSIVLRFVSN 26 (170)
T ss_dssp STTSSHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHhcC
Confidence 5899999999998753
No 389
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=94.44 E-value=0.02 Score=35.78 Aligned_cols=16 Identities=13% Similarity=0.181 Sum_probs=13.8
Q ss_pred CCCCChhHHHHHHHHH
Q 040894 1 GPGSGKSTQCSKIAKH 16 (169)
Q Consensus 1 ~~GsGKsTla~~La~~ 16 (169)
++|+||||+.+.|...
T Consensus 14 ~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 14 EGCVGKTSLVLRYCEN 29 (170)
T ss_dssp CTTSCHHHHHHHHHHC
T ss_pred cCCCCHHHHHHHHHcC
Confidence 5899999999999754
No 390
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=94.44 E-value=0.017 Score=36.00 Aligned_cols=14 Identities=36% Similarity=0.582 Sum_probs=12.5
Q ss_pred CCCCChhHHHHHHH
Q 040894 1 GPGSGKSTQCSKIA 14 (169)
Q Consensus 1 ~~GsGKsTla~~La 14 (169)
++|+||||+.+.|.
T Consensus 10 ~~~~GKSsli~~l~ 23 (166)
T 3q72_A 10 APGVGKSALARIFG 23 (166)
T ss_dssp STTSSHHHHHHHHC
T ss_pred CCCCCHHHHHHHHc
Confidence 58999999999885
No 391
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=94.41 E-value=0.021 Score=36.13 Aligned_cols=16 Identities=19% Similarity=0.407 Sum_probs=13.7
Q ss_pred CCCCChhHHHHHHHHH
Q 040894 1 GPGSGKSTQCSKIAKH 16 (169)
Q Consensus 1 ~~GsGKsTla~~La~~ 16 (169)
++||||||+.+.|...
T Consensus 16 ~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 16 DSGVGKTSLMHRYVND 31 (182)
T ss_dssp CTTSSHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHhC
Confidence 5899999999998763
No 392
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=94.41 E-value=0.02 Score=35.84 Aligned_cols=15 Identities=33% Similarity=0.474 Sum_probs=13.4
Q ss_pred CCCCChhHHHHHHHH
Q 040894 1 GPGSGKSTQCSKIAK 15 (169)
Q Consensus 1 ~~GsGKsTla~~La~ 15 (169)
++||||||+.+.|..
T Consensus 11 ~~~~GKssli~~l~~ 25 (172)
T 2erx_A 11 AGGVGKSSLVLRFVK 25 (172)
T ss_dssp CTTSSHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHc
Confidence 589999999999975
No 393
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=94.40 E-value=0.021 Score=40.30 Aligned_cols=17 Identities=18% Similarity=-0.066 Sum_probs=13.9
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
||||||||++-.++...
T Consensus 36 ~pGsGKTtL~Lq~~~~~ 52 (333)
T 3io5_A 36 PSKSFKSNFGLTMVSSY 52 (333)
T ss_dssp SSSSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 79999999988876543
No 394
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=94.39 E-value=0.021 Score=40.26 Aligned_cols=16 Identities=25% Similarity=0.204 Sum_probs=14.5
Q ss_pred CCCCChhHHHHHHHHH
Q 040894 1 GPGSGKSTQCSKIAKH 16 (169)
Q Consensus 1 ~~GsGKsTla~~La~~ 16 (169)
||||||||++..++..
T Consensus 106 ~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 106 VFGSGKTQIMHQSCVN 121 (322)
T ss_dssp STTSSHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHH
Confidence 6999999999999875
No 395
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=94.37 E-value=0.021 Score=35.53 Aligned_cols=16 Identities=25% Similarity=0.347 Sum_probs=13.7
Q ss_pred CCCCChhHHHHHHHHH
Q 040894 1 GPGSGKSTQCSKIAKH 16 (169)
Q Consensus 1 ~~GsGKsTla~~La~~ 16 (169)
++||||||+.+.|...
T Consensus 11 ~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 11 SGGVGKSALTVQFVQG 26 (167)
T ss_dssp STTSSHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHcC
Confidence 4899999999999763
No 396
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=94.30 E-value=0.019 Score=43.39 Aligned_cols=17 Identities=24% Similarity=0.477 Sum_probs=14.9
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
||||||||+++.++...
T Consensus 289 ~~GsGKSTLl~~l~g~~ 305 (525)
T 1tf7_A 289 ATGTGKTLLVSRFVENA 305 (525)
T ss_dssp CTTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 69999999999998654
No 397
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=94.28 E-value=0.023 Score=42.14 Aligned_cols=17 Identities=29% Similarity=0.499 Sum_probs=14.9
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
+||+||||++..++...
T Consensus 211 ~pG~GKTtl~l~ia~~~ 227 (454)
T 2r6a_A 211 RPSVGKTAFALNIAQNV 227 (454)
T ss_dssp CTTSCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 69999999999987754
No 398
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=94.26 E-value=0.022 Score=35.94 Aligned_cols=16 Identities=25% Similarity=0.333 Sum_probs=13.8
Q ss_pred CCCCChhHHHHHHHHH
Q 040894 1 GPGSGKSTQCSKIAKH 16 (169)
Q Consensus 1 ~~GsGKsTla~~La~~ 16 (169)
++||||||+.+.|...
T Consensus 14 ~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 14 DGASGKTSLTTCFAQE 29 (178)
T ss_dssp CTTSSHHHHHHHHHGG
T ss_pred cCCCCHHHHHHHHHhC
Confidence 5899999999999754
No 399
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=94.25 E-value=0.016 Score=42.51 Aligned_cols=16 Identities=31% Similarity=0.314 Sum_probs=14.1
Q ss_pred CCCCChhHHHHHHHHH
Q 040894 1 GPGSGKSTQCSKIAKH 16 (169)
Q Consensus 1 ~~GsGKsTla~~La~~ 16 (169)
++||||||+.+.|+..
T Consensus 39 ~sGaGKSTLln~L~g~ 54 (418)
T 2qag_C 39 ESGLGKSTLINSLFLT 54 (418)
T ss_dssp CTTSSHHHHHHHHTTC
T ss_pred CCCCcHHHHHHHHhCC
Confidence 6899999999999753
No 400
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=94.23 E-value=0.023 Score=36.60 Aligned_cols=15 Identities=20% Similarity=0.195 Sum_probs=13.6
Q ss_pred CCCCChhHHHHHHHH
Q 040894 1 GPGSGKSTQCSKIAK 15 (169)
Q Consensus 1 ~~GsGKsTla~~La~ 15 (169)
++|+||||+.+.|..
T Consensus 31 ~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 31 LDNAGKTTLLHMLKN 45 (190)
T ss_dssp STTSSHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHhc
Confidence 589999999999976
No 401
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=94.23 E-value=0.023 Score=36.25 Aligned_cols=16 Identities=25% Similarity=0.283 Sum_probs=14.0
Q ss_pred CCCCChhHHHHHHHHH
Q 040894 1 GPGSGKSTQCSKIAKH 16 (169)
Q Consensus 1 ~~GsGKsTla~~La~~ 16 (169)
++|+||||+.+.|...
T Consensus 15 ~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 15 DSQCGKTALLHVFAKD 30 (184)
T ss_dssp STTSSHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHhcC
Confidence 5899999999999764
No 402
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=94.22 E-value=0.024 Score=35.36 Aligned_cols=15 Identities=27% Similarity=0.355 Sum_probs=13.4
Q ss_pred CCCCChhHHHHHHHH
Q 040894 1 GPGSGKSTQCSKIAK 15 (169)
Q Consensus 1 ~~GsGKsTla~~La~ 15 (169)
++|+||||+.+.|..
T Consensus 14 ~~~~GKssli~~l~~ 28 (170)
T 1r2q_A 14 ESAVGKSSLVLRFVK 28 (170)
T ss_dssp STTSSHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHc
Confidence 589999999999975
No 403
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=94.22 E-value=0.021 Score=36.69 Aligned_cols=18 Identities=28% Similarity=0.130 Sum_probs=14.8
Q ss_pred CCCCChhHHHHHHHHHhC
Q 040894 1 GPGSGKSTQCSKIAKHLG 18 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~ 18 (169)
++|+||||+.+.|...+.
T Consensus 22 ~~~~GKssL~~~l~~~~~ 39 (198)
T 3t1o_A 22 PGLSGKTTNLKWIYSKVP 39 (198)
T ss_dssp STTSSHHHHHHHHHHTSC
T ss_pred CCCCCHHHHHHHHHhhcc
Confidence 589999999998876553
No 404
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=94.17 E-value=0.025 Score=35.70 Aligned_cols=16 Identities=31% Similarity=0.466 Sum_probs=13.9
Q ss_pred CCCCChhHHHHHHHHH
Q 040894 1 GPGSGKSTQCSKIAKH 16 (169)
Q Consensus 1 ~~GsGKsTla~~La~~ 16 (169)
++||||||+.+.|...
T Consensus 17 ~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 17 GGGVGKSALTIQFIQS 32 (181)
T ss_dssp CTTSSHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHhC
Confidence 4799999999999764
No 405
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=94.16 E-value=0.025 Score=36.02 Aligned_cols=16 Identities=25% Similarity=0.424 Sum_probs=13.9
Q ss_pred CCCCChhHHHHHHHHH
Q 040894 1 GPGSGKSTQCSKIAKH 16 (169)
Q Consensus 1 ~~GsGKsTla~~La~~ 16 (169)
++||||||+.+.|...
T Consensus 12 ~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 12 ADGVGKSALTIQLIQN 27 (189)
T ss_dssp CTTSSHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHhC
Confidence 5899999999999754
No 406
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=94.16 E-value=0.022 Score=39.10 Aligned_cols=16 Identities=25% Similarity=0.405 Sum_probs=13.9
Q ss_pred CCCCChhHHHHHHHHH
Q 040894 1 GPGSGKSTQCSKIAKH 16 (169)
Q Consensus 1 ~~GsGKsTla~~La~~ 16 (169)
+|||||||+.+.|...
T Consensus 11 ~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 11 NPNVGKTTIFNALTGL 26 (271)
T ss_dssp CSSSSHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHhCC
Confidence 5899999999999653
No 407
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=94.16 E-value=0.024 Score=36.25 Aligned_cols=16 Identities=25% Similarity=0.405 Sum_probs=13.9
Q ss_pred CCCCChhHHHHHHHHH
Q 040894 1 GPGSGKSTQCSKIAKH 16 (169)
Q Consensus 1 ~~GsGKsTla~~La~~ 16 (169)
++||||||+++.|...
T Consensus 29 ~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 29 AGGVGKSALTIQLIQN 44 (190)
T ss_dssp STTSSHHHHHHHHHHS
T ss_pred cCCCCHHHHHHHHHcC
Confidence 4799999999999764
No 408
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=94.15 E-value=0.026 Score=40.92 Aligned_cols=17 Identities=29% Similarity=0.403 Sum_probs=14.8
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
|+||||||+++.+...+
T Consensus 43 ~~G~GKs~~~~~~~~~~ 59 (392)
T 4ag6_A 43 KPGAGKSFTAKMLLLRE 59 (392)
T ss_dssp CTTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 68999999999987654
No 409
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=94.12 E-value=0.028 Score=34.93 Aligned_cols=16 Identities=25% Similarity=0.150 Sum_probs=13.8
Q ss_pred CCCCChhHHHHHHHHH
Q 040894 1 GPGSGKSTQCSKIAKH 16 (169)
Q Consensus 1 ~~GsGKsTla~~La~~ 16 (169)
++|+||||+.+.|...
T Consensus 8 ~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 8 LDAAGKTTILYKLKLG 23 (164)
T ss_dssp STTSSHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHcC
Confidence 5899999999999754
No 410
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=94.09 E-value=0.026 Score=35.29 Aligned_cols=15 Identities=27% Similarity=0.328 Sum_probs=13.2
Q ss_pred CCCCChhHHHHHHHH
Q 040894 1 GPGSGKSTQCSKIAK 15 (169)
Q Consensus 1 ~~GsGKsTla~~La~ 15 (169)
++||||||+.+.|..
T Consensus 15 ~~~~GKssl~~~l~~ 29 (171)
T 1upt_A 15 LDGAGKTTILYRLQV 29 (171)
T ss_dssp STTSSHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHhc
Confidence 589999999999965
No 411
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=94.06 E-value=0.027 Score=41.54 Aligned_cols=17 Identities=41% Similarity=0.610 Sum_probs=15.0
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
++||||||++..||..+
T Consensus 108 ~~GvGKTT~a~~LA~~l 124 (433)
T 2xxa_A 108 LQGAGKTTSVGKLGKFL 124 (433)
T ss_dssp STTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 47999999999999766
No 412
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=94.05 E-value=0.0092 Score=45.64 Aligned_cols=17 Identities=35% Similarity=0.421 Sum_probs=15.1
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
|+||||||+++.|+..+
T Consensus 375 ~sGsGKSTll~~l~g~~ 391 (578)
T 4a82_A 375 MSGGGKSTLINLIPRFY 391 (578)
T ss_dssp STTSSHHHHHTTTTTSS
T ss_pred CCCChHHHHHHHHhcCC
Confidence 78999999999997755
No 413
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=94.04 E-value=0.027 Score=36.01 Aligned_cols=15 Identities=20% Similarity=0.355 Sum_probs=13.4
Q ss_pred CCCCChhHHHHHHHH
Q 040894 1 GPGSGKSTQCSKIAK 15 (169)
Q Consensus 1 ~~GsGKsTla~~La~ 15 (169)
++|+||||+.+.|..
T Consensus 19 ~~~~GKSsli~~l~~ 33 (195)
T 3bc1_A 19 DSGVGKTSVLYQYTD 33 (195)
T ss_dssp STTSSHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHhc
Confidence 589999999999976
No 414
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=94.03 E-value=0.027 Score=35.46 Aligned_cols=16 Identities=25% Similarity=0.343 Sum_probs=13.9
Q ss_pred CCCCChhHHHHHHHHH
Q 040894 1 GPGSGKSTQCSKIAKH 16 (169)
Q Consensus 1 ~~GsGKsTla~~La~~ 16 (169)
++||||||+.+.|...
T Consensus 23 ~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 23 DMGVGKSCLLHQFTEK 38 (179)
T ss_dssp STTSSHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHcC
Confidence 4799999999999764
No 415
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=94.03 E-value=0.025 Score=35.66 Aligned_cols=15 Identities=27% Similarity=0.257 Sum_probs=13.3
Q ss_pred CCCCChhHHHHHHHH
Q 040894 1 GPGSGKSTQCSKIAK 15 (169)
Q Consensus 1 ~~GsGKsTla~~La~ 15 (169)
++||||||+.+.|..
T Consensus 16 ~~~~GKssl~~~l~~ 30 (178)
T 2lkc_A 16 HVDHGKTTLLDAIRH 30 (178)
T ss_dssp CTTTTHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHhC
Confidence 589999999999965
No 416
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=93.99 E-value=0.024 Score=35.77 Aligned_cols=15 Identities=33% Similarity=0.468 Sum_probs=13.0
Q ss_pred CCCCChhHHHHHHHH
Q 040894 1 GPGSGKSTQCSKIAK 15 (169)
Q Consensus 1 ~~GsGKsTla~~La~ 15 (169)
++||||||+.+.|..
T Consensus 17 ~~~~GKssl~~~l~~ 31 (181)
T 3tw8_B 17 DSGVGKSSLLLRFAD 31 (181)
T ss_dssp CTTSCHHHHHHHHCS
T ss_pred CCCCCHHHHHHHHhc
Confidence 589999999999854
No 417
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=93.98 E-value=0.028 Score=35.77 Aligned_cols=16 Identities=25% Similarity=0.428 Sum_probs=13.7
Q ss_pred CCCCChhHHHHHHHHH
Q 040894 1 GPGSGKSTQCSKIAKH 16 (169)
Q Consensus 1 ~~GsGKsTla~~La~~ 16 (169)
++||||||+.+.|...
T Consensus 18 ~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 18 NAGTGKSCLLHQFIEK 33 (186)
T ss_dssp STTSSHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHcC
Confidence 5899999999999753
No 418
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=93.98 E-value=0.024 Score=39.63 Aligned_cols=16 Identities=38% Similarity=0.484 Sum_probs=13.9
Q ss_pred CCCCChhHHHHHHHHH
Q 040894 1 GPGSGKSTQCSKIAKH 16 (169)
Q Consensus 1 ~~GsGKsTla~~La~~ 16 (169)
+||+||||+.+.|...
T Consensus 16 ~~nvGKSTLln~L~g~ 31 (301)
T 1ega_A 16 RPNVGKSTLLNKLLGQ 31 (301)
T ss_dssp SSSSSHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHCC
Confidence 5899999999999753
No 419
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=93.97 E-value=0.023 Score=36.47 Aligned_cols=16 Identities=19% Similarity=0.273 Sum_probs=13.7
Q ss_pred CCCCChhHHHHHHHHH
Q 040894 1 GPGSGKSTQCSKIAKH 16 (169)
Q Consensus 1 ~~GsGKsTla~~La~~ 16 (169)
++||||||+.+.|...
T Consensus 31 ~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 31 RSNVGKSSFINSLINR 46 (195)
T ss_dssp BTTSSHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHhCC
Confidence 4899999999999753
No 420
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=93.96 E-value=0.028 Score=35.37 Aligned_cols=15 Identities=13% Similarity=0.244 Sum_probs=13.3
Q ss_pred CCCCChhHHHHHHHH
Q 040894 1 GPGSGKSTQCSKIAK 15 (169)
Q Consensus 1 ~~GsGKsTla~~La~ 15 (169)
++||||||+.+.|..
T Consensus 22 ~~~~GKssli~~l~~ 36 (179)
T 2y8e_A 22 EQSVGKTSLITRFMY 36 (179)
T ss_dssp STTSSHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHc
Confidence 589999999999974
No 421
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=93.96 E-value=0.029 Score=36.14 Aligned_cols=16 Identities=25% Similarity=0.381 Sum_probs=14.1
Q ss_pred CCCCChhHHHHHHHHH
Q 040894 1 GPGSGKSTQCSKIAKH 16 (169)
Q Consensus 1 ~~GsGKsTla~~La~~ 16 (169)
++||||||+.+.|...
T Consensus 15 ~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 15 ESSVGKSSIVLRLTKD 30 (208)
T ss_dssp CTTSSHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHhC
Confidence 5899999999999764
No 422
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=93.90 E-value=0.025 Score=36.12 Aligned_cols=16 Identities=25% Similarity=0.300 Sum_probs=13.7
Q ss_pred CCCCChhHHHHHHHHH
Q 040894 1 GPGSGKSTQCSKIAKH 16 (169)
Q Consensus 1 ~~GsGKsTla~~La~~ 16 (169)
++||||||+.+.|...
T Consensus 9 ~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 9 RSNVGKSTLIYRLTGK 24 (190)
T ss_dssp BTTSSHHHHHHHHHSC
T ss_pred CCCCCHHHHHHHHhCc
Confidence 4899999999999753
No 423
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=93.87 E-value=0.031 Score=35.36 Aligned_cols=16 Identities=31% Similarity=0.484 Sum_probs=13.6
Q ss_pred CCCCChhHHHHHHHHH
Q 040894 1 GPGSGKSTQCSKIAKH 16 (169)
Q Consensus 1 ~~GsGKsTla~~La~~ 16 (169)
++||||||+.+.|...
T Consensus 20 ~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 20 DVGAGKSSLVLRFVKD 35 (181)
T ss_dssp CTTSCHHHHHHHHHHC
T ss_pred cCCCCHHHHHHHHHcC
Confidence 5899999999998753
No 424
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=93.87 E-value=0.013 Score=44.98 Aligned_cols=17 Identities=41% Similarity=0.526 Sum_probs=15.1
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
|+||||||+++.|+..+
T Consensus 377 ~sGsGKSTll~~l~g~~ 393 (587)
T 3qf4_A 377 ETGSGKSTLMNLIPRLI 393 (587)
T ss_dssp SSSSSHHHHHHTTTTSS
T ss_pred CCCCCHHHHHHHHhCCc
Confidence 78999999999997755
No 425
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=93.86 E-value=0.01 Score=45.62 Aligned_cols=20 Identities=25% Similarity=0.257 Sum_probs=17.5
Q ss_pred CCCCChhHHHHHHHHHhCCc
Q 040894 1 GPGSGKSTQCSKIAKHLGFR 20 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~ 20 (169)
|||+|||++|+.+++.++..
T Consensus 335 ppGtGKT~LAr~la~~~~r~ 354 (595)
T 3f9v_A 335 DPGTAKSQMLQFISRVAPRA 354 (595)
T ss_dssp SSCCTHHHHHHSSSTTCSCE
T ss_pred CCchHHHHHHHHHHHhCCCc
Confidence 79999999999999987643
No 426
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=93.85 E-value=0.031 Score=35.49 Aligned_cols=16 Identities=25% Similarity=0.270 Sum_probs=13.8
Q ss_pred CCCCChhHHHHHHHHH
Q 040894 1 GPGSGKSTQCSKIAKH 16 (169)
Q Consensus 1 ~~GsGKsTla~~La~~ 16 (169)
++||||||+.+.|...
T Consensus 26 ~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 26 SGGVGKSALTLQFMYD 41 (187)
T ss_dssp STTSSHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHhhC
Confidence 4799999999999763
No 427
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=93.84 E-value=0.031 Score=35.92 Aligned_cols=16 Identities=25% Similarity=0.507 Sum_probs=13.8
Q ss_pred CCCCChhHHHHHHHHH
Q 040894 1 GPGSGKSTQCSKIAKH 16 (169)
Q Consensus 1 ~~GsGKsTla~~La~~ 16 (169)
++|+||||+.+.|...
T Consensus 33 ~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 33 ESGVGKTNLLSRFTRN 48 (193)
T ss_dssp STTSSHHHHHHHHHHS
T ss_pred cCCCCHHHHHHHHhcC
Confidence 5899999999999763
No 428
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=93.82 E-value=0.032 Score=40.16 Aligned_cols=17 Identities=24% Similarity=0.249 Sum_probs=14.9
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
||||||||+|..++...
T Consensus 82 ~pGsGKTtlal~la~~~ 98 (366)
T 1xp8_A 82 PESGGKTTLALAIVAQA 98 (366)
T ss_dssp STTSSHHHHHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHH
Confidence 69999999999988764
No 429
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=93.81 E-value=0.031 Score=43.34 Aligned_cols=16 Identities=38% Similarity=0.634 Sum_probs=11.6
Q ss_pred CCCCChhHHHHHHHHH
Q 040894 1 GPGSGKSTQCSKIAKH 16 (169)
Q Consensus 1 ~~GsGKsTla~~La~~ 16 (169)
|||+||||.+-.+...
T Consensus 213 PPGTGKT~ti~~~I~~ 228 (646)
T 4b3f_X 213 PPGTGKTTTVVEIILQ 228 (646)
T ss_dssp CTTSCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHH
Confidence 8999999766554443
No 430
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=93.81 E-value=0.032 Score=35.26 Aligned_cols=16 Identities=19% Similarity=0.318 Sum_probs=13.7
Q ss_pred CCCCChhHHHHHHHHH
Q 040894 1 GPGSGKSTQCSKIAKH 16 (169)
Q Consensus 1 ~~GsGKsTla~~La~~ 16 (169)
++|+||||+.+.|...
T Consensus 18 ~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 18 DSGVGKTCLLVRFKDG 33 (180)
T ss_dssp STTSSHHHHHHHHHHS
T ss_pred cCCCCHHHHHHHHHhC
Confidence 4899999999999763
No 431
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=93.79 E-value=0.032 Score=35.72 Aligned_cols=16 Identities=25% Similarity=0.231 Sum_probs=13.3
Q ss_pred CCCCChhHHHHHHHHH
Q 040894 1 GPGSGKSTQCSKIAKH 16 (169)
Q Consensus 1 ~~GsGKsTla~~La~~ 16 (169)
++|+||||+.+.+...
T Consensus 28 ~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 28 NLSSGKSALVHRYLTG 43 (184)
T ss_dssp CTTSCHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHhcC
Confidence 4899999999887653
No 432
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=93.78 E-value=0.028 Score=40.42 Aligned_cols=14 Identities=36% Similarity=0.506 Sum_probs=12.8
Q ss_pred CCCCChhHHHHHHH
Q 040894 1 GPGSGKSTQCSKIA 14 (169)
Q Consensus 1 ~~GsGKsTla~~La 14 (169)
|.||||||+...++
T Consensus 31 ~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 31 PNGAGKSSLFEAIS 44 (365)
T ss_dssp CTTSSHHHHHHHHH
T ss_pred CCCCCHHHHHHHHH
Confidence 68999999999986
No 433
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=93.76 E-value=0.032 Score=35.39 Aligned_cols=16 Identities=25% Similarity=0.316 Sum_probs=13.8
Q ss_pred CCCCChhHHHHHHHHH
Q 040894 1 GPGSGKSTQCSKIAKH 16 (169)
Q Consensus 1 ~~GsGKsTla~~La~~ 16 (169)
++||||||+.+.|...
T Consensus 26 ~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 26 DGGVGKSALTIQFFQK 41 (183)
T ss_dssp STTSSHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHhC
Confidence 4899999999999754
No 434
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=93.74 E-value=0.037 Score=36.71 Aligned_cols=17 Identities=24% Similarity=0.153 Sum_probs=15.0
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
|+||||||.+-.++.++
T Consensus 36 ~MgsGKTT~lL~~a~r~ 52 (214)
T 2j9r_A 36 SMFSGKSEELIRRVRRT 52 (214)
T ss_dssp STTSCHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHH
Confidence 46999999999998877
No 435
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=93.73 E-value=0.028 Score=35.83 Aligned_cols=16 Identities=25% Similarity=0.302 Sum_probs=13.8
Q ss_pred CCCCChhHHHHHHHHH
Q 040894 1 GPGSGKSTQCSKIAKH 16 (169)
Q Consensus 1 ~~GsGKsTla~~La~~ 16 (169)
++|+||||+.+.|...
T Consensus 24 ~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 24 LDNAGKTTLLKQLASE 39 (181)
T ss_dssp STTSSHHHHHHHHCCS
T ss_pred CCCCCHHHHHHHHhcC
Confidence 5899999999999754
No 436
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=93.69 E-value=0.031 Score=37.45 Aligned_cols=16 Identities=31% Similarity=0.430 Sum_probs=13.7
Q ss_pred CCCCChhHHHHHHHHH
Q 040894 1 GPGSGKSTQCSKIAKH 16 (169)
Q Consensus 1 ~~GsGKsTla~~La~~ 16 (169)
++||||||+.+.|...
T Consensus 37 ~~g~GKStlin~l~g~ 52 (239)
T 3lxx_A 37 KTGAGKSATGNSILGR 52 (239)
T ss_dssp CTTSSHHHHHHHHHTS
T ss_pred CCCCCHHHHHHHHcCC
Confidence 5899999999998653
No 437
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=93.67 E-value=0.028 Score=45.59 Aligned_cols=15 Identities=47% Similarity=0.507 Sum_probs=13.7
Q ss_pred CCCCChhHHHHHHHH
Q 040894 1 GPGSGKSTQCSKIAK 15 (169)
Q Consensus 1 ~~GsGKsTla~~La~ 15 (169)
|+||||||+++.|+.
T Consensus 469 pNGsGKSTLLk~Lag 483 (986)
T 2iw3_A 469 PNGCGKSTLMRAIAN 483 (986)
T ss_dssp STTSSHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHhC
Confidence 689999999999983
No 438
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=93.67 E-value=0.029 Score=35.93 Aligned_cols=16 Identities=19% Similarity=0.243 Sum_probs=13.8
Q ss_pred CCCCChhHHHHHHHHH
Q 040894 1 GPGSGKSTQCSKIAKH 16 (169)
Q Consensus 1 ~~GsGKsTla~~La~~ 16 (169)
++||||||+.+.|...
T Consensus 31 ~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 31 RSNVGKSSLLNALFNR 46 (195)
T ss_dssp BTTSSHHHHHHHHHTS
T ss_pred CCCCCHHHHHHHHHcC
Confidence 4799999999999764
No 439
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=93.67 E-value=0.034 Score=35.25 Aligned_cols=16 Identities=13% Similarity=0.111 Sum_probs=13.6
Q ss_pred CCCCChhHHHHHHHHH
Q 040894 1 GPGSGKSTQCSKIAKH 16 (169)
Q Consensus 1 ~~GsGKsTla~~La~~ 16 (169)
++|+||||+.+.|...
T Consensus 13 ~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 13 DGAVGKTCLLISYTTN 28 (186)
T ss_dssp STTSSHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHcC
Confidence 4899999999998753
No 440
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=93.66 E-value=0.034 Score=42.94 Aligned_cols=17 Identities=41% Similarity=0.759 Sum_probs=13.9
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
|||+||||++..+...+
T Consensus 203 ppGTGKT~~~~~~i~~l 219 (624)
T 2gk6_A 203 PPGTGKTVTSATIVYHL 219 (624)
T ss_dssp CTTSCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 89999999888776654
No 441
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=93.65 E-value=0.035 Score=35.99 Aligned_cols=16 Identities=19% Similarity=0.409 Sum_probs=13.9
Q ss_pred CCCCChhHHHHHHHHH
Q 040894 1 GPGSGKSTQCSKIAKH 16 (169)
Q Consensus 1 ~~GsGKsTla~~La~~ 16 (169)
++||||||+.+.|...
T Consensus 16 ~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 16 DSGVGKTSLMNQYVNK 31 (207)
T ss_dssp CTTSSHHHHHHHHHHS
T ss_pred cCCCCHHHHHHHHHcC
Confidence 5899999999999764
No 442
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=93.57 E-value=0.037 Score=35.57 Aligned_cols=16 Identities=25% Similarity=0.484 Sum_probs=13.8
Q ss_pred CCCCChhHHHHHHHHH
Q 040894 1 GPGSGKSTQCSKIAKH 16 (169)
Q Consensus 1 ~~GsGKsTla~~La~~ 16 (169)
++|+||||+.+.|...
T Consensus 31 ~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 31 DTGVGKSSIVCRFVQD 46 (192)
T ss_dssp CTTSSHHHHHHHHHHC
T ss_pred cCCCCHHHHHHHHhcC
Confidence 5899999999999754
No 443
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.56 E-value=0.039 Score=35.39 Aligned_cols=17 Identities=18% Similarity=0.200 Sum_probs=14.4
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
++|+||||+.+.|...-
T Consensus 31 ~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 31 NSSVGKTSFLFRYADDT 47 (191)
T ss_dssp STTSSHHHHHHHHHHHT
T ss_pred CCCcCHHHHHHHHhcCC
Confidence 58999999999997643
No 444
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=93.56 E-value=0.036 Score=35.86 Aligned_cols=16 Identities=25% Similarity=0.270 Sum_probs=13.7
Q ss_pred CCCCChhHHHHHHHHH
Q 040894 1 GPGSGKSTQCSKIAKH 16 (169)
Q Consensus 1 ~~GsGKsTla~~La~~ 16 (169)
++||||||+.+.|...
T Consensus 22 ~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 22 SGGVGKSALTLQFMYD 37 (206)
T ss_dssp STTSSHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHhC
Confidence 5899999999999754
No 445
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.55 E-value=0.038 Score=35.65 Aligned_cols=16 Identities=25% Similarity=0.378 Sum_probs=13.9
Q ss_pred CCCCChhHHHHHHHHH
Q 040894 1 GPGSGKSTQCSKIAKH 16 (169)
Q Consensus 1 ~~GsGKsTla~~La~~ 16 (169)
++|+||||+.+.|...
T Consensus 36 ~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 36 RAGVGKSALVVRFLTK 51 (196)
T ss_dssp CTTSSHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHhC
Confidence 4899999999999764
No 446
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=93.53 E-value=0.026 Score=36.68 Aligned_cols=15 Identities=20% Similarity=0.189 Sum_probs=13.0
Q ss_pred CCCCChhHHHHHHHH
Q 040894 1 GPGSGKSTQCSKIAK 15 (169)
Q Consensus 1 ~~GsGKsTla~~La~ 15 (169)
++|+||||+.+.|..
T Consensus 33 ~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 33 LDNAGKTTLLHMLKD 47 (198)
T ss_dssp ETTSSHHHHHHHHSC
T ss_pred CCCCCHHHHHHHHhc
Confidence 489999999999864
No 447
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=93.51 E-value=0.035 Score=35.14 Aligned_cols=15 Identities=20% Similarity=0.178 Sum_probs=13.2
Q ss_pred CCCCChhHHHHHHHH
Q 040894 1 GPGSGKSTQCSKIAK 15 (169)
Q Consensus 1 ~~GsGKsTla~~La~ 15 (169)
++|+||||+.+.|..
T Consensus 14 ~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 14 YRSVGKSSLTIQFVE 28 (181)
T ss_dssp STTSSHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHc
Confidence 489999999999974
No 448
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=93.49 E-value=0.038 Score=36.14 Aligned_cols=16 Identities=25% Similarity=0.283 Sum_probs=14.0
Q ss_pred CCCCChhHHHHHHHHH
Q 040894 1 GPGSGKSTQCSKIAKH 16 (169)
Q Consensus 1 ~~GsGKsTla~~La~~ 16 (169)
++|+||||+.+.|...
T Consensus 36 ~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 36 DSQCGKTALLHVFAKD 51 (205)
T ss_dssp STTSSHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHhcC
Confidence 5899999999999764
No 449
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=93.46 E-value=0.039 Score=35.31 Aligned_cols=16 Identities=19% Similarity=0.239 Sum_probs=13.7
Q ss_pred CCCCChhHHHHHHHHH
Q 040894 1 GPGSGKSTQCSKIAKH 16 (169)
Q Consensus 1 ~~GsGKsTla~~La~~ 16 (169)
++|+||||+.+.|...
T Consensus 30 ~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 30 NSSVGKTSFLFRYADD 45 (189)
T ss_dssp STTSSHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHcC
Confidence 4899999999998753
No 450
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=93.46 E-value=0.039 Score=35.78 Aligned_cols=16 Identities=13% Similarity=0.127 Sum_probs=13.9
Q ss_pred CCCCChhHHHHHHHHH
Q 040894 1 GPGSGKSTQCSKIAKH 16 (169)
Q Consensus 1 ~~GsGKsTla~~La~~ 16 (169)
++|+||||+.+.|...
T Consensus 32 ~~~~GKSsli~~l~~~ 47 (201)
T 3oes_A 32 YRCVGKTSLAHQFVEG 47 (201)
T ss_dssp STTSSHHHHHHHHHHS
T ss_pred CCCcCHHHHHHHHHhC
Confidence 4899999999999764
No 451
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=93.46 E-value=0.039 Score=42.52 Aligned_cols=17 Identities=47% Similarity=0.878 Sum_probs=13.7
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
||||||||++..+...+
T Consensus 172 ~pGTGKTt~l~~ll~~l 188 (608)
T 1w36_D 172 GPGTGKTTTVAKLLAAL 188 (608)
T ss_dssp CTTSTHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 79999999988776544
No 452
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=93.46 E-value=0.039 Score=35.40 Aligned_cols=16 Identities=31% Similarity=0.405 Sum_probs=13.8
Q ss_pred CCCCChhHHHHHHHHH
Q 040894 1 GPGSGKSTQCSKIAKH 16 (169)
Q Consensus 1 ~~GsGKsTla~~La~~ 16 (169)
++|+||||+.+.|...
T Consensus 24 ~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 24 DSGVGKSCLLLRFADD 39 (196)
T ss_dssp STTSSHHHHHHHHHHS
T ss_pred cCCCCHHHHHHHHHcC
Confidence 5899999999999763
No 453
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=93.46 E-value=0.037 Score=36.30 Aligned_cols=18 Identities=39% Similarity=0.318 Sum_probs=14.8
Q ss_pred CCCCChhHHHHHHHHHhC
Q 040894 1 GPGSGKSTQCSKIAKHLG 18 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~ 18 (169)
|.||||||+...+.--++
T Consensus 31 ~NgsGKStil~ai~~~l~ 48 (203)
T 3qks_A 31 QNGSGKSSLLDAILVGLY 48 (203)
T ss_dssp CTTSSHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHhc
Confidence 679999999999865553
No 454
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.42 E-value=0.041 Score=35.41 Aligned_cols=15 Identities=33% Similarity=0.474 Sum_probs=13.4
Q ss_pred CCCCChhHHHHHHHH
Q 040894 1 GPGSGKSTQCSKIAK 15 (169)
Q Consensus 1 ~~GsGKsTla~~La~ 15 (169)
++||||||+.+.|..
T Consensus 16 ~~~~GKSsli~~l~~ 30 (199)
T 2gf0_A 16 AGGVGKSSLVLRFVK 30 (199)
T ss_dssp CTTSSHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHc
Confidence 489999999999976
No 455
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=93.42 E-value=0.037 Score=40.23 Aligned_cols=15 Identities=47% Similarity=0.485 Sum_probs=14.0
Q ss_pred CCCCChhHHHHHHHH
Q 040894 1 GPGSGKSTQCSKIAK 15 (169)
Q Consensus 1 ~~GsGKsTla~~La~ 15 (169)
+|||||||+.+.|..
T Consensus 28 ~pnaGKSTL~n~Ltg 42 (392)
T 1ni3_A 28 MPNVGKSTFFRAITK 42 (392)
T ss_dssp CSSSSHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHC
Confidence 689999999999987
No 456
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=93.41 E-value=0.042 Score=39.96 Aligned_cols=17 Identities=29% Similarity=0.493 Sum_probs=15.2
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
|+|+||||+++.|+...
T Consensus 182 ~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 182 PPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp CSSSSHHHHHHHHHHHH
T ss_pred CCCCChhHHHHHHHHHH
Confidence 79999999999998864
No 457
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=93.40 E-value=0.042 Score=35.19 Aligned_cols=15 Identities=13% Similarity=0.235 Sum_probs=13.2
Q ss_pred CCCCChhHHHHHHHH
Q 040894 1 GPGSGKSTQCSKIAK 15 (169)
Q Consensus 1 ~~GsGKsTla~~La~ 15 (169)
++||||||+.+.|..
T Consensus 28 ~~~~GKSsli~~l~~ 42 (189)
T 1z06_A 28 DSNVGKTCLTYRFCA 42 (189)
T ss_dssp CTTSSHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHc
Confidence 489999999999875
No 458
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=93.40 E-value=0.04 Score=35.92 Aligned_cols=16 Identities=19% Similarity=0.412 Sum_probs=13.7
Q ss_pred CCCCChhHHHHHHHHH
Q 040894 1 GPGSGKSTQCSKIAKH 16 (169)
Q Consensus 1 ~~GsGKsTla~~La~~ 16 (169)
++|+||||+.+.|...
T Consensus 34 ~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 34 NAGVGKTCLVRRFTQG 49 (201)
T ss_dssp STTSSHHHHHHHHHHS
T ss_pred cCCCCHHHHHHHHHhC
Confidence 4899999999998753
No 459
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=93.36 E-value=0.042 Score=34.76 Aligned_cols=16 Identities=13% Similarity=0.111 Sum_probs=13.7
Q ss_pred CCCCChhHHHHHHHHH
Q 040894 1 GPGSGKSTQCSKIAKH 16 (169)
Q Consensus 1 ~~GsGKsTla~~La~~ 16 (169)
++|+||||+.+.+...
T Consensus 16 ~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 16 DGAVGKTCLLISYTSN 31 (182)
T ss_dssp STTSSHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHhcC
Confidence 4899999999998753
No 460
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=93.36 E-value=0.044 Score=39.00 Aligned_cols=17 Identities=18% Similarity=0.284 Sum_probs=15.1
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
+||+||||++..++...
T Consensus 54 ~pG~GKTt~al~ia~~~ 70 (338)
T 4a1f_A 54 RPSMGKTSLMMNMVLSA 70 (338)
T ss_dssp CTTSCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 69999999999998764
No 461
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=93.35 E-value=0.044 Score=35.59 Aligned_cols=24 Identities=38% Similarity=0.578 Sum_probs=18.2
Q ss_pred CCCChhHHHHHHHHHh---CC--ceechh
Q 040894 2 PGSGKSTQCSKIAKHL---GF--RHLSAG 25 (169)
Q Consensus 2 ~GsGKsTla~~La~~~---~~--~~i~~d 25 (169)
.|+||||++..||..+ |. .++|.|
T Consensus 11 gG~GKTt~a~~la~~la~~g~~vlliD~D 39 (206)
T 4dzz_A 11 GGSGKTTAVINIATALSRSGYNIAVVDTD 39 (206)
T ss_dssp TTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CCccHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 5999999999998876 33 346654
No 462
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=93.34 E-value=0.036 Score=35.32 Aligned_cols=16 Identities=25% Similarity=0.212 Sum_probs=13.7
Q ss_pred CCCCChhHHHHHHHHH
Q 040894 1 GPGSGKSTQCSKIAKH 16 (169)
Q Consensus 1 ~~GsGKsTla~~La~~ 16 (169)
++||||||+.+.|...
T Consensus 26 ~~~~GKssl~~~l~~~ 41 (186)
T 1ksh_A 26 LDNAGKTTILKKFNGE 41 (186)
T ss_dssp STTSSHHHHHHHHTTC
T ss_pred CCCCCHHHHHHHHhcC
Confidence 5899999999999753
No 463
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=93.33 E-value=0.043 Score=35.16 Aligned_cols=16 Identities=31% Similarity=0.397 Sum_probs=13.6
Q ss_pred CCCCChhHHHHHHHHH
Q 040894 1 GPGSGKSTQCSKIAKH 16 (169)
Q Consensus 1 ~~GsGKsTla~~La~~ 16 (169)
++|+||||+.+.|...
T Consensus 29 ~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 29 RRGAGKSALTVKFLTK 44 (187)
T ss_dssp CTTSSHHHHHHHHHHS
T ss_pred CCCCcHHHHHHHHHhC
Confidence 4899999999998764
No 464
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=93.32 E-value=0.042 Score=35.70 Aligned_cols=16 Identities=25% Similarity=0.385 Sum_probs=13.7
Q ss_pred CCCCChhHHHHHHHHH
Q 040894 1 GPGSGKSTQCSKIAKH 16 (169)
Q Consensus 1 ~~GsGKsTla~~La~~ 16 (169)
++|+||||+.+.|...
T Consensus 16 ~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 16 NSGVGKSCLLLRFSDD 31 (206)
T ss_dssp STTSSHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHhcC
Confidence 5899999999999753
No 465
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=93.31 E-value=0.044 Score=40.50 Aligned_cols=17 Identities=29% Similarity=0.421 Sum_probs=14.8
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
+||+||||++..++...
T Consensus 208 ~pg~GKT~lal~ia~~~ 224 (444)
T 2q6t_A 208 RPAMGKTAFALTIAQNA 224 (444)
T ss_dssp CTTSCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 69999999999988754
No 466
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=93.30 E-value=0.034 Score=39.96 Aligned_cols=17 Identities=29% Similarity=0.159 Sum_probs=13.9
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
++||||||+++.+.-.+
T Consensus 41 ~~~SGKST~~kq~~i~~ 57 (362)
T 1zcb_A 41 AGESGKSTFLKQMRIIH 57 (362)
T ss_dssp STTSSHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHh
Confidence 47999999999995444
No 467
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=93.30 E-value=0.043 Score=35.21 Aligned_cols=16 Identities=25% Similarity=0.341 Sum_probs=13.7
Q ss_pred CCCCChhHHHHHHHHH
Q 040894 1 GPGSGKSTQCSKIAKH 16 (169)
Q Consensus 1 ~~GsGKsTla~~La~~ 16 (169)
++|+||||+.+.|...
T Consensus 29 ~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 29 DTGVGKSCLLLQFTDK 44 (191)
T ss_dssp STTSSHHHHHHHHHHS
T ss_pred cCCCCHHHHHHHHhcC
Confidence 4799999999999763
No 468
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=93.27 E-value=0.044 Score=35.12 Aligned_cols=15 Identities=40% Similarity=0.235 Sum_probs=13.3
Q ss_pred CCCCChhHHHHHHHH
Q 040894 1 GPGSGKSTQCSKIAK 15 (169)
Q Consensus 1 ~~GsGKsTla~~La~ 15 (169)
++|+||||+.+.|..
T Consensus 30 ~~~~GKSsli~~l~~ 44 (188)
T 1zd9_A 30 LQYSGKTTFVNVIAS 44 (188)
T ss_dssp STTSSHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHc
Confidence 479999999999975
No 469
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=93.26 E-value=0.044 Score=35.09 Aligned_cols=16 Identities=25% Similarity=0.391 Sum_probs=13.8
Q ss_pred CCCCChhHHHHHHHHH
Q 040894 1 GPGSGKSTQCSKIAKH 16 (169)
Q Consensus 1 ~~GsGKsTla~~La~~ 16 (169)
++|+||||+.+.|...
T Consensus 23 ~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 23 ESGVGKSSLLLRFTDD 38 (195)
T ss_dssp STTSSHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHcC
Confidence 5899999999999764
No 470
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=93.26 E-value=0.04 Score=35.65 Aligned_cols=16 Identities=19% Similarity=0.239 Sum_probs=13.6
Q ss_pred CCCCChhHHHHHHHHH
Q 040894 1 GPGSGKSTQCSKIAKH 16 (169)
Q Consensus 1 ~~GsGKsTla~~La~~ 16 (169)
++||||||+.+.|...
T Consensus 16 ~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 16 NSSVGKTSFLFRYADD 31 (203)
T ss_dssp STTSSHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHhcC
Confidence 5899999999998753
No 471
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.25 E-value=0.024 Score=36.01 Aligned_cols=15 Identities=27% Similarity=0.319 Sum_probs=12.8
Q ss_pred CCCCChhHHHHHHHH
Q 040894 1 GPGSGKSTQCSKIAK 15 (169)
Q Consensus 1 ~~GsGKsTla~~La~ 15 (169)
++||||||+.+.|..
T Consensus 26 ~~~~GKssli~~l~~ 40 (183)
T 1moz_A 26 LDGAGKTTILYRLQI 40 (183)
T ss_dssp ETTSSHHHHHHHTCC
T ss_pred CCCCCHHHHHHHHhc
Confidence 479999999998863
No 472
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=93.24 E-value=0.041 Score=35.13 Aligned_cols=15 Identities=20% Similarity=0.160 Sum_probs=13.3
Q ss_pred CCCCChhHHHHHHHH
Q 040894 1 GPGSGKSTQCSKIAK 15 (169)
Q Consensus 1 ~~GsGKsTla~~La~ 15 (169)
++||||||+.+.|..
T Consensus 24 ~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 24 LDNAGKTTILYQFSM 38 (187)
T ss_dssp STTSSHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHhc
Confidence 489999999999974
No 473
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=93.18 E-value=0.032 Score=35.27 Aligned_cols=16 Identities=25% Similarity=0.281 Sum_probs=13.8
Q ss_pred CCCCChhHHHHHHHHH
Q 040894 1 GPGSGKSTQCSKIAKH 16 (169)
Q Consensus 1 ~~GsGKsTla~~La~~ 16 (169)
++|+||||+.+.|...
T Consensus 15 ~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 15 DARSGKSSLIHRFLTG 30 (178)
T ss_dssp CGGGCHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHhC
Confidence 4799999999999763
No 474
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=93.16 E-value=0.046 Score=35.35 Aligned_cols=16 Identities=25% Similarity=0.383 Sum_probs=13.7
Q ss_pred CCCCChhHHHHHHHHH
Q 040894 1 GPGSGKSTQCSKIAKH 16 (169)
Q Consensus 1 ~~GsGKsTla~~La~~ 16 (169)
++|+||||+.+.|...
T Consensus 36 ~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 36 DAAVGKSSFLMRLCKN 51 (199)
T ss_dssp STTSSHHHHHHHHHHC
T ss_pred cCCCCHHHHHHHHHhC
Confidence 4899999999999753
No 475
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=93.14 E-value=0.046 Score=35.73 Aligned_cols=16 Identities=19% Similarity=0.094 Sum_probs=13.9
Q ss_pred CCCCChhHHHHHHHHH
Q 040894 1 GPGSGKSTQCSKIAKH 16 (169)
Q Consensus 1 ~~GsGKsTla~~La~~ 16 (169)
++|+||||+.+.|...
T Consensus 15 ~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 15 LCDSGKTLLFVRLLTG 30 (214)
T ss_dssp STTSSHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHhCC
Confidence 5899999999999764
No 476
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=93.13 E-value=0.047 Score=35.09 Aligned_cols=16 Identities=19% Similarity=0.150 Sum_probs=13.9
Q ss_pred CCCCChhHHHHHHHHH
Q 040894 1 GPGSGKSTQCSKIAKH 16 (169)
Q Consensus 1 ~~GsGKsTla~~La~~ 16 (169)
++|+||||+.+.|...
T Consensus 31 ~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 31 DGAVGKTCLLLAFSKG 46 (194)
T ss_dssp STTSSHHHHHHHHHHS
T ss_pred cCCCCHHHHHHHHhcC
Confidence 4899999999999764
No 477
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.06 E-value=0.05 Score=35.47 Aligned_cols=16 Identities=19% Similarity=0.189 Sum_probs=13.8
Q ss_pred CCCCChhHHHHHHHHH
Q 040894 1 GPGSGKSTQCSKIAKH 16 (169)
Q Consensus 1 ~~GsGKsTla~~La~~ 16 (169)
++||||||+.+.|...
T Consensus 33 ~~~~GKSsli~~l~~~ 48 (207)
T 2fv8_A 33 DGACGKTCLLIVFSKD 48 (207)
T ss_dssp CTTSSHHHHHHHHHHS
T ss_pred cCCCCHHHHHHHHhcC
Confidence 4899999999999763
No 478
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=93.03 E-value=0.033 Score=36.06 Aligned_cols=15 Identities=33% Similarity=0.435 Sum_probs=12.8
Q ss_pred CCCCChhHHHHHHHH
Q 040894 1 GPGSGKSTQCSKIAK 15 (169)
Q Consensus 1 ~~GsGKsTla~~La~ 15 (169)
++|+||||+.+.|..
T Consensus 31 ~~~vGKSsLi~~l~~ 45 (195)
T 3cbq_A 31 ESGVGKSTLAGTFGG 45 (195)
T ss_dssp STTSSHHHHHHHTCC
T ss_pred CCCCCHHHHHHHHHh
Confidence 489999999999853
No 479
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=93.02 E-value=0.036 Score=42.27 Aligned_cols=15 Identities=27% Similarity=0.417 Sum_probs=13.2
Q ss_pred CCCCChhHHHHHHHH
Q 040894 1 GPGSGKSTQCSKIAK 15 (169)
Q Consensus 1 ~~GsGKsTla~~La~ 15 (169)
|+|+||||+|..+++
T Consensus 155 ~~GiGKTtLa~~~~~ 169 (591)
T 1z6t_A 155 MAGCGKSVLAAEAVR 169 (591)
T ss_dssp CTTSSHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHh
Confidence 689999999999854
No 480
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=92.92 E-value=0.045 Score=35.26 Aligned_cols=15 Identities=27% Similarity=0.191 Sum_probs=13.0
Q ss_pred CCCCChhHHHHHHHH
Q 040894 1 GPGSGKSTQCSKIAK 15 (169)
Q Consensus 1 ~~GsGKsTla~~La~ 15 (169)
++|+||||+.+.|..
T Consensus 37 ~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 37 LDAAGKTTILYKLKL 51 (192)
T ss_dssp STTSSHHHHHHHHCS
T ss_pred CCCCCHHHHHHHHHh
Confidence 589999999999854
No 481
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=92.89 E-value=0.049 Score=37.50 Aligned_cols=16 Identities=38% Similarity=0.611 Sum_probs=14.0
Q ss_pred CCCCChhHHHHHHHHH
Q 040894 1 GPGSGKSTQCSKIAKH 16 (169)
Q Consensus 1 ~~GsGKsTla~~La~~ 16 (169)
+||+||||+.+.|...
T Consensus 11 ~~nvGKSTL~n~L~g~ 26 (272)
T 3b1v_A 11 NPNSGKTSLFNLITGH 26 (272)
T ss_dssp CTTSSHHHHHHHHHCC
T ss_pred CCCCCHHHHHHHHHCC
Confidence 5899999999999763
No 482
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=92.89 E-value=0.044 Score=43.36 Aligned_cols=15 Identities=33% Similarity=0.146 Sum_probs=13.6
Q ss_pred CCCCChhHHHHHHHH
Q 040894 1 GPGSGKSTQCSKIAK 15 (169)
Q Consensus 1 ~~GsGKsTla~~La~ 15 (169)
|+||||||+.+.++-
T Consensus 584 pNGsGKSTlLr~iag 598 (765)
T 1ewq_A 584 PNMAGKSTFLRQTAL 598 (765)
T ss_dssp CSSSSHHHHHHHHHH
T ss_pred CCCCChHHHHHHHHh
Confidence 789999999999875
No 483
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=92.88 E-value=0.05 Score=35.28 Aligned_cols=15 Identities=27% Similarity=0.443 Sum_probs=13.1
Q ss_pred CCCCChhHHHHHHHH
Q 040894 1 GPGSGKSTQCSKIAK 15 (169)
Q Consensus 1 ~~GsGKsTla~~La~ 15 (169)
++||||||+.+.|..
T Consensus 33 ~~~~GKSsLi~~l~~ 47 (200)
T 2o52_A 33 SAGTGKSCLLHQFIE 47 (200)
T ss_dssp STTSSHHHHHHHHHC
T ss_pred cCCCCHHHHHHHHHh
Confidence 489999999999864
No 484
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=92.87 E-value=0.05 Score=35.09 Aligned_cols=16 Identities=38% Similarity=0.358 Sum_probs=13.8
Q ss_pred CCCCChhHHHHHHHHH
Q 040894 1 GPGSGKSTQCSKIAKH 16 (169)
Q Consensus 1 ~~GsGKsTla~~La~~ 16 (169)
.||+||||+.+.+...
T Consensus 14 ~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 14 EQGVGKSTLANIFAGV 29 (192)
T ss_dssp STTSSHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHhcC
Confidence 4899999999999753
No 485
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=92.80 E-value=0.051 Score=36.87 Aligned_cols=16 Identities=31% Similarity=0.513 Sum_probs=13.7
Q ss_pred CCCCChhHHHHHHHHH
Q 040894 1 GPGSGKSTQCSKIAKH 16 (169)
Q Consensus 1 ~~GsGKsTla~~La~~ 16 (169)
++||||||+.+.|...
T Consensus 30 ~~g~GKStl~n~l~~~ 45 (260)
T 2xtp_A 30 KTGTGKSAAGNSILRK 45 (260)
T ss_dssp CTTSCHHHHHHHHHTS
T ss_pred CCCCCHHHHHHHHhCC
Confidence 4899999999999653
No 486
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=92.79 E-value=0.056 Score=35.20 Aligned_cols=15 Identities=27% Similarity=0.412 Sum_probs=13.3
Q ss_pred CCCCChhHHHHHHHH
Q 040894 1 GPGSGKSTQCSKIAK 15 (169)
Q Consensus 1 ~~GsGKsTla~~La~ 15 (169)
++|+||||+.+.|..
T Consensus 28 ~~~~GKSsli~~l~~ 42 (213)
T 3cph_A 28 DSGVGKSCLLVRFVE 42 (213)
T ss_dssp STTSSHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHh
Confidence 589999999999975
No 487
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=92.78 E-value=0.024 Score=41.52 Aligned_cols=16 Identities=25% Similarity=0.443 Sum_probs=14.2
Q ss_pred CCCCChhHHHHHHHHH
Q 040894 1 GPGSGKSTQCSKIAKH 16 (169)
Q Consensus 1 ~~GsGKsTla~~La~~ 16 (169)
+|||||||+.+.|+..
T Consensus 165 ~~gAGKSTLL~~Lsg~ 180 (416)
T 1udx_A 165 YPNAGKSSLLAAMTRA 180 (416)
T ss_dssp CGGGCHHHHHHHHCSS
T ss_pred CCCCcHHHHHHHHHcC
Confidence 6899999999999764
No 488
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=92.77 E-value=0.049 Score=35.05 Aligned_cols=15 Identities=20% Similarity=0.454 Sum_probs=13.0
Q ss_pred CCCCChhHHHHHHHH
Q 040894 1 GPGSGKSTQCSKIAK 15 (169)
Q Consensus 1 ~~GsGKsTla~~La~ 15 (169)
++|+||||+.+.|..
T Consensus 34 ~~~~GKSsLi~~l~~ 48 (192)
T 2il1_A 34 SRGVGKTSLMERFTD 48 (192)
T ss_dssp STTSSHHHHHHHHCC
T ss_pred CCCCCHHHHHHHHhc
Confidence 479999999999864
No 489
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=92.77 E-value=0.051 Score=41.26 Aligned_cols=15 Identities=40% Similarity=0.457 Sum_probs=13.8
Q ss_pred CCCCChhHHHHHHHH
Q 040894 1 GPGSGKSTQCSKIAK 15 (169)
Q Consensus 1 ~~GsGKsTla~~La~ 15 (169)
++|+||||+|+.+++
T Consensus 160 ~gGvGKTtLA~~v~~ 174 (549)
T 2a5y_B 160 RAGSGKSVIASQALS 174 (549)
T ss_dssp STTSSHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH
Confidence 589999999999996
No 490
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=92.77 E-value=0.057 Score=35.00 Aligned_cols=16 Identities=19% Similarity=0.189 Sum_probs=13.8
Q ss_pred CCCCChhHHHHHHHHH
Q 040894 1 GPGSGKSTQCSKIAKH 16 (169)
Q Consensus 1 ~~GsGKsTla~~La~~ 16 (169)
++|+||||+.+.|...
T Consensus 33 ~~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 33 DGACGKTCLLIVFSKD 48 (201)
T ss_dssp STTSSHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHhC
Confidence 4799999999999763
No 491
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=92.76 E-value=0.049 Score=40.17 Aligned_cols=16 Identities=38% Similarity=0.476 Sum_probs=14.1
Q ss_pred CCCCChhHHHHHHHHH
Q 040894 1 GPGSGKSTQCSKIAKH 16 (169)
Q Consensus 1 ~~GsGKsTla~~La~~ 16 (169)
+||+||||+.+.|...
T Consensus 188 ~~gvGKSTLln~l~g~ 203 (439)
T 1mky_A 188 RPNVGKSTLFNAILNK 203 (439)
T ss_dssp STTSSHHHHHHHHHTS
T ss_pred CCCCCHHHHHHHHhCC
Confidence 5899999999999764
No 492
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=92.75 E-value=0.06 Score=35.55 Aligned_cols=16 Identities=13% Similarity=0.216 Sum_probs=14.2
Q ss_pred CCCChhHHHHHHHHHh
Q 040894 2 PGSGKSTQCSKIAKHL 17 (169)
Q Consensus 2 ~GsGKsTla~~La~~~ 17 (169)
+|+||||++--||..+
T Consensus 11 gGvGKTt~a~nLa~~l 26 (224)
T 1byi_A 11 TEVGKTVASCALLQAA 26 (224)
T ss_dssp TTSCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH
Confidence 6999999999998766
No 493
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=92.72 E-value=0.059 Score=34.97 Aligned_cols=16 Identities=13% Similarity=0.237 Sum_probs=13.6
Q ss_pred CCCCChhHHHHHHHHH
Q 040894 1 GPGSGKSTQCSKIAKH 16 (169)
Q Consensus 1 ~~GsGKsTla~~La~~ 16 (169)
++|+||||+.+.|...
T Consensus 37 ~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 37 DASVGKTCVVQRFKTG 52 (201)
T ss_dssp CTTSSHHHHHHHHHHS
T ss_pred cCCCCHHHHHHHHhhC
Confidence 4899999999999653
No 494
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=92.68 E-value=0.061 Score=34.51 Aligned_cols=16 Identities=19% Similarity=0.154 Sum_probs=13.9
Q ss_pred CCCCChhHHHHHHHHH
Q 040894 1 GPGSGKSTQCSKIAKH 16 (169)
Q Consensus 1 ~~GsGKsTla~~La~~ 16 (169)
++|+||||+.+.|...
T Consensus 26 ~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 26 DGAVGKTCLLMSYAND 41 (194)
T ss_dssp CTTSSHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHhcC
Confidence 4799999999999764
No 495
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=92.67 E-value=0.045 Score=34.79 Aligned_cols=16 Identities=19% Similarity=0.175 Sum_probs=13.6
Q ss_pred CCCCChhHHHHHHHHH
Q 040894 1 GPGSGKSTQCSKIAKH 16 (169)
Q Consensus 1 ~~GsGKsTla~~La~~ 16 (169)
++|+||||+.+.|...
T Consensus 29 ~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 29 LDNAGKTTILYQFSMN 44 (181)
T ss_dssp ETTSSHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHhcC
Confidence 4799999999999753
No 496
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=92.64 E-value=0.065 Score=35.24 Aligned_cols=16 Identities=31% Similarity=0.484 Sum_probs=14.5
Q ss_pred CCCChhHHHHHHHHHh
Q 040894 2 PGSGKSTQCSKIAKHL 17 (169)
Q Consensus 2 ~GsGKsTla~~La~~~ 17 (169)
.|+||||++..||..+
T Consensus 10 GGvGKTT~a~~LA~~l 25 (209)
T 3cwq_A 10 GGVGKTTTAVHLSAYL 25 (209)
T ss_dssp TTSSHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHH
Confidence 5999999999998876
No 497
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=92.63 E-value=0.027 Score=45.68 Aligned_cols=17 Identities=35% Similarity=0.450 Sum_probs=14.7
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
|+||||||+++.|+-.+
T Consensus 707 pNGSGKSTLLklLaGll 723 (986)
T 2iw3_A 707 PNGAGKSTLINVLTGEL 723 (986)
T ss_dssp CCCHHHHHHHHHHTTSS
T ss_pred CCCCCHHHHHHHHhCCC
Confidence 68999999999997644
No 498
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=92.62 E-value=0.058 Score=35.41 Aligned_cols=15 Identities=27% Similarity=0.350 Sum_probs=13.2
Q ss_pred CCCCChhHHHHHHHH
Q 040894 1 GPGSGKSTQCSKIAK 15 (169)
Q Consensus 1 ~~GsGKsTla~~La~ 15 (169)
++|+||||+.+.|..
T Consensus 42 ~~~vGKSsli~~l~~ 56 (214)
T 2j1l_A 42 DGGCGKTSLLMVFAD 56 (214)
T ss_dssp CTTSSHHHHHHHHHC
T ss_pred cCCCCHHHHHHHHHc
Confidence 589999999999974
No 499
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=92.60 E-value=0.063 Score=39.72 Aligned_cols=17 Identities=35% Similarity=0.476 Sum_probs=15.1
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
+||+||||++-.++...
T Consensus 205 ~pG~GKTtlal~ia~~~ 221 (444)
T 3bgw_A 205 RPSMGKTAFALKQAKNM 221 (444)
T ss_dssp CSSSSHHHHHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHH
Confidence 69999999999988765
No 500
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=92.60 E-value=0.062 Score=34.98 Aligned_cols=16 Identities=13% Similarity=0.111 Sum_probs=13.6
Q ss_pred CCCCChhHHHHHHHHH
Q 040894 1 GPGSGKSTQCSKIAKH 16 (169)
Q Consensus 1 ~~GsGKsTla~~La~~ 16 (169)
++|+||||+.+.+...
T Consensus 38 ~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 38 DGAVGKTCLLISYTTN 53 (204)
T ss_dssp STTSSHHHHHHHHHHS
T ss_pred cCCCCHHHHHHHHHhC
Confidence 4899999999998753
Done!