BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040896
(288 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1U02|A Chain A, Crystal Structure Of Trehalose-6-Phosphate Phosphatase
Related Protein
Length = 239
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 47/220 (21%), Positives = 89/220 (40%), Gaps = 37/220 (16%)
Query: 23 VVFLDYDGTLSPIVEDPDKAFMSDTMRMAVHEVAHFFPTAIVSGRCLDKVSRFVQL--KN 80
++FLDYDGTL PI+ +P++++ + + ++ F T IV+GR +++SRF+ L
Sbjct: 3 LIFLDYDGTLVPIIXNPEESYADAGLLSLISDLKERFDTYIVTGRSPEEISRFLPLDINX 62
Query: 81 VVYAGSHGMDISTPAGSLKQNNPKHETRTVDEQGNEVVHFQPAQEFLPQIQEMIQVLEEK 140
+ Y G+ + ++V+ + FL + +
Sbjct: 63 ICYHGA-----------------------CSKINGQIVYNNGSDRFLGVFDRIYEDTRSW 99
Query: 141 IKTIKGATVEDNKFCISVHFRRVDEDDINTLQEMVNSIVEAYPNFRISGGKKVMEIR-PC 199
+ G + + H D L+ + I + GK ++E+R P
Sbjct: 100 VSDFPGLRIYRKNLAVLYHLGLXGADXKPKLRSRIEEIARIF-GVETYYGKXIIELRVPG 158
Query: 200 IDWDKGRALEYLLDTFGFNNASDFLPLYIGDDKTDEDAFK 239
+ +KG A+ + + + GDD TDE AF+
Sbjct: 159 V--NKGSAIRSV--------RGERPAIIAGDDATDEAAFE 188
>pdb|1WR8|A Chain A, Crystal Structure Of Hypothetical Protein Ph1421 From
Pyrococcus Horikoshii.
pdb|1WR8|B Chain B, Crystal Structure Of Hypothetical Protein Ph1421 From
Pyrococcus Horikoshii
Length = 231
Score = 31.2 bits (69), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 11/48 (22%)
Query: 216 GFNNASDFLPL------YIGDDKTDEDAFKVIRHMGRGYPIIVSSVPR 257
G AS+FL + ++GD + D DAFKV+ GY + V+ P+
Sbjct: 157 GIEKASEFLGIKPKEVAHVGDGENDLDAFKVV-----GYKVAVAQAPK 199
>pdb|4F0L|A Chain A, Crystal Structure Of Amidohydrolase From Brucella
Melitensis
pdb|4F0L|B Chain B, Crystal Structure Of Amidohydrolase From Brucella
Melitensis
Length = 458
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/91 (23%), Positives = 48/91 (52%), Gaps = 8/91 (8%)
Query: 124 QEFLPQIQEMIQVLEEKIKTIKGATVEDNKFCISVH-FRRVDEDDINTLQEMVNSIVEAY 182
+ F+ + +++E KT++G E ++ H R V D+++++ ++ + +A
Sbjct: 183 RRFINDPERFARLIEGCRKTLEG--FEGAVLGVAPHSLRAVTPDELDSVTQL---LPDAP 237
Query: 183 PNFRISGGKKVMEIRPCIDWDKGRALEYLLD 213
+ ++ ++V E+ CI W R +E+LLD
Sbjct: 238 VHIHVA--EQVKEVEDCIAWSGKRPVEWLLD 266
>pdb|2I54|A Chain A, Phosphomannomutase From Leishmania Mexicana
pdb|2I54|B Chain B, Phosphomannomutase From Leishmania Mexicana
pdb|2I54|C Chain C, Phosphomannomutase From Leishmania Mexicana
pdb|2I55|A Chain A, Complex Of Glucose-1,6-Bisphosphate With
Phosphomannomutase From Leishmania Mexicana
pdb|2I55|B Chain B, Complex Of Glucose-1,6-Bisphosphate With
Phosphomannomutase From Leishmania Mexicana
pdb|2I55|C Chain C, Complex Of Glucose-1,6-Bisphosphate With
Phosphomannomutase From Leishmania Mexicana
Length = 247
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 51/232 (21%), Positives = 89/232 (38%), Gaps = 37/232 (15%)
Query: 19 GKKIVVFLDYDGTLSPIVEDPDKAFMSDTMRMAVHEVAHFFPTAIVSGRCLDKVSRFVQL 78
G K ++ D DGTL+P P D + A F +V G K QL
Sbjct: 2 GSKAILLFDVDGTLTP----PRNPETHDMKEALLKARAAGFKLGVVGGSDFAKQKE--QL 55
Query: 79 KNVVYAGSHGMDISTPAGSLKQNNPKHETRTVDEQGNEVVHFQPAQEFLPQIQEMIQVLE 138
+ + + K H + GNE V F+ + +I L+
Sbjct: 56 GESILEDFDYVFSENGLLAYKDGKEFHRNSLLRALGNEKV-----VAFVKKCLHLIADLD 110
Query: 139 EKIKTIKGATVE--DNKFCISVHFRRVDE---DDINTL-------QEMVNSIVEAYPNFR 186
I +G VE + F +S R + D+ L ++++ + EA+P+++
Sbjct: 111 --IPVQRGTFVEFRNGMFNVSPIGRNCSQQERDEFENLDKERHIREKLIRELKEAFPDYQ 168
Query: 187 IS---GGKKVMEIRPCIDWDKGRALEYLLDTFGFNNASDFLPLYIGDDKTDE 235
++ GG+ ++ P WDK L+++ +DF ++ DKT E
Sbjct: 169 LAYSVGGQISFDVFP-KGWDKTYCLQFV--------ENDFETIHFFGDKTSE 211
>pdb|2BB5|A Chain A, Structure Of Human Transcobalamin In Complex With
Cobalamin
pdb|2BB5|B Chain B, Structure Of Human Transcobalamin In Complex With
Cobalamin
Length = 409
Score = 28.9 bits (63), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 10/44 (22%)
Query: 118 VHFQPAQEFLPQIQEMI----QVLE------EKIKTIKGATVED 151
V +PA E +PQ QE+I QVL + I + G+TVED
Sbjct: 296 VMLEPAAETIPQTQEIISVTLQVLSLLPPYRQSISVLAGSTVED 339
>pdb|2F4E|A Chain A, N-Terminal Domain Of Fkbp42 From Arabidopsis Thaliana
pdb|2F4E|B Chain B, N-Terminal Domain Of Fkbp42 From Arabidopsis Thaliana
Length = 180
Score = 28.5 bits (62), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 14/71 (19%)
Query: 104 KHETRTVDEQ------GNEVVHFQPAQE--FLPQIQEMIQVLEEK-----IKTIKGATVE 150
+H+T+T D++ G+ VVH +P+QE P++ +VL+EK IK G+
Sbjct: 6 EHQTQTHDQESEIVTEGSAVVHSEPSQEGNVPPKVDSEAEVLDEKVSKQIIKEGHGSKPS 65
Query: 151 DNKFCISVHFR 161
C +H+R
Sbjct: 66 KYSTCF-LHYR 75
>pdb|2IF4|A Chain A, Crystal Structure Of A Multi-Domain Immunophilin From
Arabidopsis Thaliana
Length = 338
Score = 28.5 bits (62), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 14/71 (19%)
Query: 104 KHETRTVDEQ------GNEVVHFQPAQE--FLPQIQEMIQVLEEK-----IKTIKGATVE 150
+H+T+T D++ G+ VVH +P+QE P++ +VL+EK IK G+
Sbjct: 6 EHQTQTHDQESEIVTEGSAVVHSEPSQEGNVPPKVDSEAEVLDEKVSKQIIKEGHGSKPS 65
Query: 151 DNKFCISVHFR 161
C +H+R
Sbjct: 66 KYSTCF-LHYR 75
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,782,284
Number of Sequences: 62578
Number of extensions: 374778
Number of successful extensions: 1019
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1017
Number of HSP's gapped (non-prelim): 7
length of query: 288
length of database: 14,973,337
effective HSP length: 98
effective length of query: 190
effective length of database: 8,840,693
effective search space: 1679731670
effective search space used: 1679731670
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)