Query 040896
Match_columns 288
No_of_seqs 112 out of 1303
Neff 8.8
Searched_HMMs 46136
Date Fri Mar 29 12:53:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040896.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040896hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02580 trehalose-phosphatase 100.0 1.5E-46 3.2E-51 337.9 31.5 283 2-286 100-384 (384)
2 PLN03017 trehalose-phosphatase 100.0 4.7E-44 1E-48 319.0 31.7 273 2-284 92-364 (366)
3 PLN02151 trehalose-phosphatase 100.0 1.3E-42 2.8E-47 309.0 30.9 274 1-285 78-351 (354)
4 PRK10187 trehalose-6-phosphate 100.0 3.2E-37 7E-42 269.6 29.5 233 20-283 13-248 (266)
5 TIGR00685 T6PP trehalose-phosp 100.0 4.8E-34 1E-38 247.1 26.5 236 19-279 1-243 (244)
6 PRK14501 putative bifunctional 100.0 1.3E-33 2.8E-38 278.2 28.6 241 8-280 478-725 (726)
7 COG0561 Cof Predicted hydrolas 100.0 3.7E-34 8E-39 250.7 19.8 223 20-280 2-262 (264)
8 PRK10976 putative hydrolase; P 100.0 4.7E-34 1E-38 250.2 19.4 239 21-279 2-264 (266)
9 PRK03669 mannosyl-3-phosphogly 100.0 1.6E-33 3.4E-38 247.6 20.8 228 19-282 5-271 (271)
10 PRK10513 sugar phosphate phosp 100.0 1.1E-33 2.4E-38 248.4 19.7 217 21-279 3-268 (270)
11 PRK15126 thiamin pyrimidine py 100.0 1.2E-33 2.5E-38 248.6 17.8 235 21-279 2-262 (272)
12 COG1877 OtsB Trehalose-6-phosp 100.0 2.4E-32 5.1E-37 235.0 25.2 247 9-282 5-255 (266)
13 PLN02205 alpha,alpha-trehalose 100.0 2.1E-32 4.5E-37 270.2 26.9 247 8-282 582-848 (854)
14 PF02358 Trehalose_PPase: Treh 100.0 1.7E-33 3.7E-38 242.4 16.7 224 25-268 1-234 (235)
15 PRK01158 phosphoglycolate phos 100.0 1.8E-32 4E-37 235.0 19.2 214 21-279 3-229 (230)
16 PLN02887 hydrolase family prot 100.0 1.3E-31 2.8E-36 254.3 20.1 242 18-279 305-579 (580)
17 PLN03063 alpha,alpha-trehalose 100.0 5.4E-30 1.2E-34 252.9 28.2 253 8-282 493-787 (797)
18 PRK10530 pyridoxal phosphate ( 100.0 1.8E-30 3.8E-35 228.1 20.0 239 21-279 3-271 (272)
19 PF08282 Hydrolase_3: haloacid 100.0 9.3E-31 2E-35 225.9 17.8 210 24-275 1-254 (254)
20 TIGR01487 SPP-like sucrose-pho 100.0 7.1E-31 1.5E-35 223.1 16.0 208 21-275 1-215 (215)
21 TIGR01482 SPP-subfamily Sucros 100.0 7.8E-31 1.7E-35 224.1 15.9 211 24-278 1-224 (225)
22 PLN03064 alpha,alpha-trehalose 100.0 1.8E-28 3.9E-33 241.7 29.0 217 7-243 576-812 (934)
23 TIGR01486 HAD-SF-IIB-MPGP mann 100.0 3.8E-29 8.2E-34 218.1 21.0 217 23-279 1-256 (256)
24 TIGR01485 SPP_plant-cyano sucr 100.0 9.8E-30 2.1E-34 220.9 16.6 227 21-278 1-246 (249)
25 TIGR00099 Cof-subfamily Cof su 100.0 2.1E-29 4.5E-34 219.7 16.9 212 23-275 1-256 (256)
26 PRK00192 mannosyl-3-phosphogly 100.0 2.6E-28 5.6E-33 214.7 22.6 232 21-281 4-272 (273)
27 TIGR01484 HAD-SF-IIB HAD-super 100.0 1.6E-29 3.5E-34 213.0 12.5 197 23-252 1-204 (204)
28 TIGR02471 sucr_syn_bact_C sucr 100.0 1.7E-28 3.7E-33 211.4 15.8 216 23-278 1-234 (236)
29 PLN02382 probable sucrose-phos 100.0 2E-27 4.4E-32 219.2 17.6 229 18-279 6-260 (413)
30 TIGR02463 MPGP_rel mannosyl-3- 99.9 4.3E-27 9.4E-32 200.6 16.1 194 23-252 1-220 (221)
31 PTZ00174 phosphomannomutase; P 99.9 1.1E-26 2.3E-31 201.5 18.1 203 20-257 4-235 (247)
32 PLN02423 phosphomannomutase 99.9 1.8E-25 3.8E-30 193.4 20.8 213 18-279 4-244 (245)
33 PRK14502 bifunctional mannosyl 99.9 1.6E-24 3.5E-29 205.6 24.9 247 4-280 395-691 (694)
34 PF05116 S6PP: Sucrose-6F-phos 99.9 2.4E-26 5.1E-31 199.0 11.2 219 20-277 1-244 (247)
35 PRK12702 mannosyl-3-phosphogly 99.9 4.5E-23 9.9E-28 178.3 19.5 204 21-255 1-254 (302)
36 TIGR02461 osmo_MPG_phos mannos 99.9 7.4E-24 1.6E-28 181.0 13.9 199 23-253 1-225 (225)
37 KOG1050 Trehalose-6-phosphate 99.9 5.5E-20 1.2E-24 177.7 22.8 232 8-276 489-731 (732)
38 COG3769 Predicted hydrolase (H 99.8 4.7E-18 1E-22 138.9 15.7 207 20-256 6-238 (274)
39 KOG3189 Phosphomannomutase [Li 99.5 2.5E-13 5.4E-18 109.7 14.5 220 17-280 7-251 (252)
40 TIGR02468 sucrsPsyn_pln sucros 99.5 1.2E-12 2.6E-17 130.8 14.9 186 20-241 769-994 (1050)
41 PF03332 PMM: Eukaryotic phosp 99.3 9.8E-11 2.1E-15 97.3 12.4 194 48-280 1-220 (220)
42 PRK11133 serB phosphoserine ph 99.2 4.8E-12 1E-16 113.4 4.2 68 201-277 246-317 (322)
43 PRK09484 3-deoxy-D-manno-octul 99.2 3.3E-11 7.1E-16 99.8 7.9 56 203-266 96-153 (183)
44 smart00775 LNS2 LNS2 domain. T 99.0 7.1E-10 1.5E-14 89.4 6.3 71 23-93 1-89 (157)
45 cd01427 HAD_like Haloacid deha 99.0 2E-09 4.4E-14 83.3 7.9 55 23-77 1-59 (139)
46 TIGR02726 phenyl_P_delta pheny 98.8 4.2E-09 9E-14 85.8 4.3 72 203-282 82-158 (169)
47 TIGR01689 EcbF-BcbF capsule bi 98.7 3.9E-08 8.5E-13 75.8 5.4 52 22-73 2-55 (126)
48 TIGR01670 YrbI-phosphatas 3-de 98.6 4.3E-08 9.2E-13 78.8 4.4 73 203-283 76-153 (154)
49 TIGR01684 viral_ppase viral ph 98.6 1.4E-07 3E-12 82.3 7.4 71 20-93 125-201 (301)
50 COG1778 Low specificity phosph 98.6 2.6E-08 5.7E-13 78.0 2.0 74 201-282 81-159 (170)
51 PHA03398 viral phosphatase sup 98.4 8E-07 1.7E-11 77.6 7.1 71 19-94 126-204 (303)
52 TIGR01457 HAD-SF-IIA-hyp2 HAD- 98.0 4.9E-06 1.1E-10 72.3 4.6 64 22-91 2-74 (249)
53 COG0546 Gph Predicted phosphat 98.0 3.9E-05 8.4E-10 65.3 9.8 69 203-276 146-218 (220)
54 COG0560 SerB Phosphoserine pho 98.0 8.6E-06 1.9E-10 68.9 5.2 47 201-255 142-188 (212)
55 TIGR01458 HAD-SF-IIA-hyp3 HAD- 97.9 1.3E-05 2.8E-10 70.0 4.4 64 204-275 181-254 (257)
56 TIGR01681 HAD-SF-IIIC HAD-supe 97.9 2.1E-05 4.6E-10 61.1 5.2 55 22-76 1-64 (128)
57 TIGR01672 AphA HAD superfamily 97.9 5.6E-05 1.2E-09 64.9 7.6 71 10-80 51-159 (237)
58 PRK10444 UMP phosphatase; Prov 97.8 2E-05 4.3E-10 68.4 4.4 49 21-75 1-50 (248)
59 TIGR01670 YrbI-phosphatas 3-de 97.7 3.1E-05 6.8E-10 62.1 3.5 56 21-76 1-62 (154)
60 TIGR01452 PGP_euk phosphoglyco 97.7 4.1E-05 8.8E-10 67.6 4.2 44 21-70 2-46 (279)
61 TIGR01664 DNA-3'-Pase DNA 3'-p 97.7 0.00011 2.5E-09 59.6 6.4 49 21-69 13-69 (166)
62 TIGR01662 HAD-SF-IIIA HAD-supe 97.6 4.8E-05 1E-09 59.2 3.4 47 22-68 1-51 (132)
63 PLN02645 phosphoglycolate phos 97.6 5.2E-05 1.1E-09 68.0 4.0 46 20-71 27-73 (311)
64 TIGR00338 serB phosphoserine p 97.3 0.00014 3.1E-09 61.5 2.7 57 203-268 152-210 (219)
65 TIGR01488 HAD-SF-IB Haloacid D 97.2 0.00018 3.9E-09 58.6 2.5 41 197-241 137-177 (177)
66 PRK10671 copA copper exporting 97.2 0.00037 8.1E-09 70.7 5.2 69 193-276 693-765 (834)
67 TIGR01491 HAD-SF-IB-PSPlk HAD- 97.2 0.00041 8.9E-09 57.6 4.3 46 202-255 146-191 (201)
68 TIGR01116 ATPase-IIA1_Ca sarco 97.2 0.00054 1.2E-08 70.1 5.6 68 193-275 611-682 (917)
69 TIGR01511 ATPase-IB1_Cu copper 97.1 0.0016 3.5E-08 63.1 8.1 67 194-275 448-518 (562)
70 TIGR01490 HAD-SF-IB-hyp1 HAD-s 97.1 0.0005 1.1E-08 57.3 4.1 46 201-254 153-198 (202)
71 TIGR02137 HSK-PSP phosphoserin 97.1 0.00065 1.4E-08 57.1 4.4 66 201-278 130-198 (203)
72 PRK11009 aphA acid phosphatase 97.1 0.0023 4.9E-08 55.1 7.6 60 9-68 50-140 (237)
73 PF13344 Hydrolase_6: Haloacid 97.1 0.00053 1.1E-08 50.9 3.3 40 24-69 1-41 (101)
74 TIGR01656 Histidinol-ppas hist 97.1 0.00058 1.3E-08 54.2 3.6 47 22-68 1-53 (147)
75 PF06437 ISN1: IMP-specific 5' 97.0 0.065 1.4E-06 48.6 16.0 62 11-75 136-199 (408)
76 TIGR01460 HAD-SF-IIA Haloacid 97.0 0.0011 2.3E-08 57.1 4.7 46 24-75 1-50 (236)
77 TIGR00213 GmhB_yaeD D,D-heptos 97.0 0.0006 1.3E-08 55.8 3.0 62 203-272 107-175 (176)
78 TIGR01675 plant-AP plant acid 96.9 0.0022 4.9E-08 54.6 6.2 54 18-71 74-149 (229)
79 TIGR01512 ATPase-IB2_Cd heavy 96.9 0.0013 2.8E-08 63.5 5.2 67 194-275 407-478 (536)
80 COG1778 Low specificity phosph 96.9 0.0015 3.2E-08 51.7 4.4 57 20-76 7-69 (170)
81 PRK13222 phosphoglycolate phos 96.9 0.0029 6.3E-08 53.5 6.5 67 203-277 150-223 (226)
82 PF08645 PNK3P: Polynucleotide 96.9 0.00089 1.9E-08 54.0 3.1 44 22-65 1-52 (159)
83 TIGR01533 lipo_e_P4 5'-nucleot 96.9 0.0024 5.2E-08 55.8 5.9 66 6-71 60-147 (266)
84 PHA02530 pseT polynucleotide k 96.8 0.0043 9.3E-08 55.2 7.7 56 21-76 158-221 (300)
85 TIGR02726 phenyl_P_delta pheny 96.8 0.0013 2.7E-08 53.7 3.9 57 20-76 6-68 (169)
86 TIGR01497 kdpB K+-transporting 96.8 0.0016 3.5E-08 64.0 5.3 68 193-275 489-560 (675)
87 TIGR01668 YqeG_hyp_ppase HAD s 96.8 0.0029 6.4E-08 51.5 5.8 47 19-69 23-70 (170)
88 TIGR01459 HAD-SF-IIA-hyp4 HAD- 96.8 0.0022 4.9E-08 55.3 5.4 46 20-71 7-53 (242)
89 PF08235 LNS2: LNS2 (Lipin/Ned 96.8 0.0018 3.8E-08 51.8 4.3 51 23-73 1-58 (157)
90 PRK13582 thrH phosphoserine ph 96.8 0.0018 3.8E-08 54.1 4.4 67 202-280 131-200 (205)
91 COG2179 Predicted hydrolase of 96.8 0.0053 1.1E-07 49.1 6.7 55 18-76 25-80 (175)
92 PLN02954 phosphoserine phospha 96.7 0.0042 9.1E-08 52.6 6.3 67 201-275 153-223 (224)
93 PF09419 PGP_phosphatase: Mito 96.7 0.0068 1.5E-07 49.2 7.0 48 16-67 36-86 (168)
94 KOG1050 Trehalose-6-phosphate 96.6 5.8E-07 1.3E-11 88.0 -20.0 94 2-95 170-273 (732)
95 TIGR01525 ATPase-IB_hvy heavy 96.6 0.0025 5.5E-08 61.8 5.1 61 203-275 435-499 (556)
96 TIGR01685 MDP-1 magnesium-depe 96.6 0.0032 6.9E-08 51.5 4.8 57 21-77 2-81 (174)
97 smart00577 CPDc catalytic doma 96.6 0.0041 8.9E-08 49.4 5.1 57 20-76 1-78 (148)
98 COG2217 ZntA Cation transport 96.5 0.0037 8.1E-08 61.8 5.2 69 192-275 579-651 (713)
99 PRK08942 D,D-heptose 1,7-bisph 96.5 0.0022 4.9E-08 52.6 3.0 64 205-276 106-177 (181)
100 COG4087 Soluble P-type ATPase 96.4 0.0046 9.9E-08 47.4 4.2 57 213-277 87-148 (152)
101 TIGR01524 ATPase-IIIB_Mg magne 96.4 0.0058 1.3E-07 62.3 6.3 62 191-267 581-644 (867)
102 PLN02954 phosphoserine phospha 96.4 0.0054 1.2E-07 51.9 5.3 33 44-76 85-118 (224)
103 PRK11033 zntA zinc/cadmium/mer 96.4 0.0037 8E-08 62.6 4.4 66 194-275 611-680 (741)
104 TIGR01523 ATPase-IID_K-Na pota 96.4 0.0046 9.9E-08 64.2 5.1 68 193-275 726-798 (1053)
105 PRK13223 phosphoglycolate phos 96.3 0.0098 2.1E-07 52.3 6.2 68 201-276 156-230 (272)
106 TIGR00338 serB phosphoserine p 96.3 0.0073 1.6E-07 51.0 5.3 34 43-76 85-119 (219)
107 PRK13225 phosphoglycolate phos 96.3 0.012 2.6E-07 51.8 6.7 72 202-280 195-272 (273)
108 PRK06769 hypothetical protein; 96.2 0.0041 8.9E-08 50.8 3.3 49 20-68 3-54 (173)
109 PRK01122 potassium-transportin 96.2 0.0063 1.4E-07 60.0 5.1 68 193-275 488-559 (679)
110 PTZ00445 p36-lilke protein; Pr 96.2 0.012 2.5E-07 49.3 5.8 58 13-70 34-103 (219)
111 TIGR01522 ATPase-IIA2_Ca golgi 96.2 0.0078 1.7E-07 61.6 5.8 69 192-275 597-670 (884)
112 PRK10517 magnesium-transportin 96.1 0.01 2.2E-07 60.8 6.1 62 191-267 616-679 (902)
113 COG4030 Uncharacterized protei 96.1 0.03 6.6E-07 47.1 7.8 57 201-262 189-246 (315)
114 PRK15122 magnesium-transportin 96.1 0.011 2.4E-07 60.5 6.3 62 191-267 616-679 (903)
115 PRK09552 mtnX 2-hydroxy-3-keto 96.1 0.011 2.4E-07 50.1 5.3 69 201-281 146-218 (219)
116 TIGR01663 PNK-3'Pase polynucle 96.1 0.017 3.6E-07 55.4 6.8 52 18-69 165-224 (526)
117 PF03031 NIF: NLI interacting 96.0 0.0076 1.6E-07 48.3 3.9 55 22-76 1-69 (159)
118 KOG0210 P-type ATPase [Inorgan 96.0 0.0057 1.2E-07 59.0 3.4 62 203-273 768-830 (1051)
119 PRK09552 mtnX 2-hydroxy-3-keto 96.0 0.0074 1.6E-07 51.2 3.7 15 21-35 3-17 (219)
120 TIGR01517 ATPase-IIB_Ca plasma 96.0 0.0097 2.1E-07 61.3 5.2 69 192-275 648-721 (941)
121 TIGR01106 ATPase-IIC_X-K sodiu 95.9 0.0088 1.9E-07 62.0 4.8 61 192-267 663-726 (997)
122 PRK14010 potassium-transportin 95.9 0.0097 2.1E-07 58.7 4.8 68 193-275 484-555 (673)
123 TIGR01456 CECR5 HAD-superfamil 95.9 0.015 3.2E-07 52.4 5.7 46 23-74 2-55 (321)
124 TIGR01261 hisB_Nterm histidino 95.9 0.0063 1.4E-07 49.1 2.9 36 203-241 104-139 (161)
125 PRK13226 phosphoglycolate phos 95.9 0.021 4.6E-07 48.7 6.2 65 203-275 152-224 (229)
126 TIGR01491 HAD-SF-IB-PSPlk HAD- 95.9 0.017 3.8E-07 47.7 5.5 31 46-76 83-114 (201)
127 TIGR01686 FkbH FkbH-like domai 95.9 0.019 4.1E-07 51.7 6.0 57 20-76 2-65 (320)
128 TIGR01647 ATPase-IIIA_H plasma 95.9 0.017 3.7E-07 58.1 6.3 61 192-267 514-576 (755)
129 PF12710 HAD: haloacid dehalog 95.9 0.0086 1.9E-07 49.2 3.5 33 203-239 157-192 (192)
130 PRK13288 pyrophosphatase PpaX; 95.8 0.038 8.2E-07 46.4 7.3 69 201-277 137-212 (214)
131 TIGR01454 AHBA_synth_RP 3-amin 95.8 0.019 4.1E-07 47.9 5.4 66 203-276 132-204 (205)
132 TIGR01449 PGP_bact 2-phosphogl 95.8 0.018 3.9E-07 48.2 5.3 64 203-274 142-212 (213)
133 COG0647 NagD Predicted sugar p 95.7 0.013 2.9E-07 51.2 4.3 49 20-74 7-59 (269)
134 PRK08238 hypothetical protein; 95.7 0.025 5.4E-07 53.7 6.3 46 43-89 72-121 (479)
135 TIGR03333 salvage_mtnX 2-hydro 95.7 0.018 3.9E-07 48.6 4.8 66 202-279 143-212 (214)
136 PF03767 Acid_phosphat_B: HAD 95.6 0.0091 2E-07 51.1 2.6 53 19-71 70-144 (229)
137 TIGR01545 YfhB_g-proteo haloac 95.6 0.014 2.9E-07 49.4 3.7 43 201-254 160-202 (210)
138 PRK11590 hypothetical protein; 95.6 0.022 4.8E-07 48.0 5.0 43 201-254 161-203 (211)
139 PRK13582 thrH phosphoserine ph 95.6 0.019 4.2E-07 47.8 4.6 31 46-76 71-101 (205)
140 COG0560 SerB Phosphoserine pho 95.6 0.017 3.8E-07 48.8 4.3 34 42-75 76-110 (212)
141 TIGR01652 ATPase-Plipid phosph 95.5 0.01 2.2E-07 61.9 3.3 70 192-275 747-819 (1057)
142 TIGR02137 HSK-PSP phosphoserin 95.5 0.018 3.8E-07 48.4 4.1 34 43-76 68-101 (203)
143 COG0474 MgtA Cation transport 95.3 0.018 3.9E-07 59.1 4.3 61 192-267 618-681 (917)
144 PF00702 Hydrolase: haloacid d 95.3 0.013 2.9E-07 48.8 2.9 32 207-241 183-214 (215)
145 TIGR01488 HAD-SF-IB Haloacid D 95.3 0.027 5.8E-07 45.6 4.6 32 45-76 75-107 (177)
146 PRK05446 imidazole glycerol-ph 95.2 0.024 5.3E-07 51.6 4.4 48 20-67 1-55 (354)
147 TIGR02251 HIF-SF_euk Dullard-l 95.1 0.043 9.3E-07 44.3 5.1 56 21-76 1-75 (162)
148 PF13242 Hydrolase_like: HAD-h 95.1 0.067 1.5E-06 37.0 5.5 58 206-270 8-74 (75)
149 PF12689 Acid_PPase: Acid Phos 95.1 0.022 4.8E-07 46.3 3.4 56 21-76 3-80 (169)
150 TIGR02250 FCP1_euk FCP1-like p 95.1 0.054 1.2E-06 43.5 5.5 59 18-76 3-91 (156)
151 PRK10826 2-deoxyglucose-6-phos 95.0 0.095 2.1E-06 44.3 7.2 63 202-272 148-216 (222)
152 TIGR01489 DKMTPPase-SF 2,3-dik 95.0 0.049 1.1E-06 44.4 5.3 37 198-241 145-181 (188)
153 PRK13222 phosphoglycolate phos 94.9 0.048 1.1E-06 46.0 5.2 15 20-34 5-19 (226)
154 PF05152 DUF705: Protein of un 94.8 0.12 2.6E-06 45.2 7.2 70 20-92 121-196 (297)
155 TIGR01657 P-ATPase-V P-type AT 94.8 0.047 1E-06 57.1 5.7 70 192-276 781-852 (1054)
156 PLN03190 aminophospholipid tra 94.8 0.044 9.5E-07 57.6 5.4 67 194-274 852-921 (1178)
157 PF06888 Put_Phosphatase: Puta 94.6 0.077 1.7E-06 45.5 5.7 79 194-278 142-233 (234)
158 TIGR01680 Veg_Stor_Prot vegeta 94.6 0.053 1.1E-06 47.3 4.7 52 20-71 100-174 (275)
159 PLN02940 riboflavin kinase 94.4 0.074 1.6E-06 49.1 5.5 30 46-75 96-126 (382)
160 TIGR01489 DKMTPPase-SF 2,3-dik 94.4 0.051 1.1E-06 44.3 3.9 15 21-35 1-15 (188)
161 PF06941 NT5C: 5' nucleotidase 94.4 0.062 1.4E-06 44.5 4.4 28 43-70 73-101 (191)
162 TIGR03333 salvage_mtnX 2-hydro 94.4 0.05 1.1E-06 45.9 3.9 34 43-76 70-104 (214)
163 PRK13478 phosphonoacetaldehyde 94.3 0.2 4.3E-06 43.8 7.6 69 204-280 160-259 (267)
164 PRK10725 fructose-1-P/6-phosph 94.2 0.024 5.1E-07 46.5 1.7 36 203-241 143-178 (188)
165 PRK08942 D,D-heptose 1,7-bisph 94.2 0.15 3.3E-06 41.7 6.5 48 21-68 3-55 (181)
166 COG0241 HisB Histidinol phosph 94.2 0.044 9.5E-07 45.0 3.0 45 21-65 5-54 (181)
167 TIGR02245 HAD_IIID1 HAD-superf 94.1 0.098 2.1E-06 43.6 5.0 58 19-76 19-78 (195)
168 PLN02779 haloacid dehalogenase 94.0 0.034 7.5E-07 49.2 2.3 60 203-270 203-267 (286)
169 KOG1615 Phosphoserine phosphat 93.9 0.1 2.2E-06 43.0 4.5 39 41-79 86-128 (227)
170 PRK11587 putative phosphatase; 93.8 0.029 6.3E-07 47.4 1.4 61 203-271 139-203 (218)
171 TIGR02252 DREG-2 REG-2-like, H 93.8 0.042 9E-07 45.7 2.3 34 205-241 163-197 (203)
172 TIGR01490 HAD-SF-IB-hyp1 HAD-s 93.8 0.097 2.1E-06 43.4 4.5 32 44-75 88-120 (202)
173 PLN02575 haloacid dehalogenase 93.7 0.13 2.7E-06 47.4 5.4 70 204-280 274-347 (381)
174 TIGR01548 HAD-SF-IA-hyp1 haloa 93.6 0.033 7.2E-07 46.2 1.4 32 204-238 163-194 (197)
175 TIGR02253 CTE7 HAD superfamily 93.6 0.1 2.2E-06 44.0 4.3 59 204-270 152-219 (221)
176 PRK14988 GMP/IMP nucleotidase; 93.6 0.16 3.5E-06 43.2 5.6 68 204-279 151-222 (224)
177 PRK10748 flavin mononucleotide 93.5 0.044 9.6E-07 47.0 2.1 64 203-274 164-237 (238)
178 PRK13288 pyrophosphatase PpaX; 93.4 0.039 8.3E-07 46.4 1.5 14 21-34 3-16 (214)
179 PRK11590 hypothetical protein; 93.4 0.042 9.1E-07 46.3 1.7 17 18-34 3-19 (211)
180 PLN02770 haloacid dehalogenase 93.4 0.038 8.3E-07 47.8 1.5 68 203-278 165-240 (248)
181 TIGR03351 PhnX-like phosphonat 93.3 0.055 1.2E-06 45.6 2.2 65 203-275 146-219 (220)
182 KOG0202 Ca2+ transporting ATPa 93.2 0.18 3.8E-06 50.2 5.8 60 193-267 658-720 (972)
183 TIGR01544 HAD-SF-IE haloacid d 93.2 0.093 2E-06 46.1 3.5 58 19-76 20-90 (277)
184 KOG1615 Phosphoserine phosphat 93.2 0.014 3.1E-07 47.9 -1.4 43 194-242 151-193 (227)
185 PRK10826 2-deoxyglucose-6-phos 93.0 0.045 9.8E-07 46.3 1.2 17 18-34 4-20 (222)
186 COG3700 AphA Acid phosphatase 92.9 0.24 5.2E-06 40.3 5.2 65 10-74 51-146 (237)
187 TIGR03351 PhnX-like phosphonat 92.9 0.22 4.7E-06 41.9 5.4 29 21-58 1-29 (220)
188 TIGR02009 PGMB-YQAB-SF beta-ph 92.8 0.05 1.1E-06 44.3 1.3 36 203-241 143-178 (185)
189 KOG0207 Cation transport ATPas 92.8 0.23 4.9E-06 49.8 5.8 70 191-275 764-837 (951)
190 TIGR01422 phosphonatase phosph 92.7 0.11 2.3E-06 45.0 3.1 64 204-275 158-252 (253)
191 TIGR01494 ATPase_P-type ATPase 92.6 0.18 4E-06 48.2 5.0 57 193-267 387-443 (499)
192 COG3882 FkbH Predicted enzyme 92.5 0.37 7.9E-06 45.2 6.4 74 4-77 204-290 (574)
193 PRK06769 hypothetical protein; 92.4 0.26 5.6E-06 40.2 5.0 65 203-275 94-171 (173)
194 TIGR01993 Pyr-5-nucltdase pyri 92.4 0.12 2.5E-06 42.3 2.9 35 204-241 143-177 (184)
195 PLN02575 haloacid dehalogenase 92.2 0.54 1.2E-05 43.3 7.2 16 19-34 129-144 (381)
196 TIGR01422 phosphonatase phosph 92.2 0.35 7.7E-06 41.7 5.8 14 21-34 2-15 (253)
197 PRK14988 GMP/IMP nucleotidase; 92.0 0.077 1.7E-06 45.1 1.5 15 20-34 9-23 (224)
198 PHA02597 30.2 hypothetical pro 92.0 0.075 1.6E-06 44.0 1.3 62 203-272 131-195 (197)
199 TIGR02254 YjjG/YfnB HAD superf 91.9 0.096 2.1E-06 44.0 2.0 64 203-274 153-223 (224)
200 PRK13478 phosphonoacetaldehyde 91.9 0.14 3.1E-06 44.7 3.0 14 21-34 4-17 (267)
201 PRK13225 phosphoglycolate phos 91.8 0.065 1.4E-06 47.1 0.8 16 19-34 60-75 (273)
202 COG4359 Uncharacterized conser 91.7 0.34 7.4E-06 39.6 4.6 15 20-34 2-16 (220)
203 PRK13223 phosphoglycolate phos 91.7 0.076 1.6E-06 46.7 1.0 29 21-58 13-41 (272)
204 PLN03243 haloacid dehalogenase 91.6 0.57 1.2E-05 40.9 6.5 66 203-276 166-235 (260)
205 PRK13226 phosphoglycolate phos 91.5 0.075 1.6E-06 45.3 0.9 29 21-58 12-40 (229)
206 PLN03243 haloacid dehalogenase 91.4 0.16 3.4E-06 44.4 2.8 19 16-34 19-37 (260)
207 PRK11587 putative phosphatase; 91.3 0.51 1.1E-05 39.7 5.8 29 21-58 3-31 (218)
208 PLN02770 haloacid dehalogenase 91.1 0.48 1E-05 40.9 5.5 15 20-34 21-35 (248)
209 COG0637 Predicted phosphatase/ 91.0 0.11 2.5E-06 44.0 1.5 43 206-255 146-188 (221)
210 TIGR01545 YfhB_g-proteo haloac 90.8 0.22 4.7E-06 42.0 3.0 15 20-34 4-18 (210)
211 TIGR01990 bPGM beta-phosphoglu 90.5 0.21 4.5E-06 40.6 2.6 36 203-241 142-177 (185)
212 PRK09449 dUMP phosphatase; Pro 90.3 1.1 2.4E-05 37.6 7.0 65 204-276 152-223 (224)
213 PLN02779 haloacid dehalogenase 90.2 0.52 1.1E-05 41.7 5.0 24 11-34 29-53 (286)
214 PRK10563 6-phosphogluconate ph 90.2 0.18 3.8E-06 42.6 1.9 41 203-251 143-183 (221)
215 TIGR01454 AHBA_synth_RP 3-amin 90.1 0.1 2.3E-06 43.4 0.5 25 24-57 1-25 (205)
216 TIGR01549 HAD-SF-IA-v1 haloaci 90.1 0.12 2.5E-06 40.9 0.7 35 203-241 119-153 (154)
217 TIGR01493 HAD-SF-IA-v2 Haloaci 90.0 0.22 4.8E-06 40.2 2.3 31 205-238 142-172 (175)
218 TIGR02254 YjjG/YfnB HAD superf 89.9 0.84 1.8E-05 38.2 5.9 14 21-34 1-14 (224)
219 TIGR00213 GmhB_yaeD D,D-heptos 89.6 0.88 1.9E-05 37.0 5.6 48 22-69 2-53 (176)
220 TIGR01449 PGP_bact 2-phosphogl 89.3 0.12 2.6E-06 43.1 0.3 11 24-34 1-11 (213)
221 KOG0206 P-type ATPase [General 89.2 0.26 5.6E-06 51.2 2.5 33 203-241 781-813 (1151)
222 TIGR02253 CTE7 HAD superfamily 89.1 1 2.2E-05 37.8 5.8 33 21-58 2-34 (221)
223 PRK09449 dUMP phosphatase; Pro 88.8 0.22 4.8E-06 42.0 1.5 14 21-34 3-16 (224)
224 PRK06698 bifunctional 5'-methy 88.7 1.3 2.8E-05 41.9 6.8 66 203-278 386-456 (459)
225 COG4087 Soluble P-type ATPase 88.7 0.62 1.4E-05 36.0 3.6 47 24-76 17-63 (152)
226 PRK06698 bifunctional 5'-methy 88.6 0.21 4.6E-06 47.3 1.4 29 22-55 242-270 (459)
227 TIGR01428 HAD_type_II 2-haloal 88.4 0.25 5.5E-06 40.8 1.6 35 204-241 150-184 (198)
228 KOG2116 Protein involved in pl 87.4 0.75 1.6E-05 44.6 4.1 75 20-97 529-617 (738)
229 TIGR01261 hisB_Nterm histidino 87.3 0.57 1.2E-05 37.7 3.0 47 22-68 2-55 (161)
230 PLN02645 phosphoglycolate phos 87.1 2.5 5.3E-05 37.9 7.2 66 203-276 231-308 (311)
231 PLN02177 glycerol-3-phosphate 87.0 0.68 1.5E-05 44.3 3.7 40 203-254 176-215 (497)
232 TIGR01662 HAD-SF-IIIA HAD-supe 86.8 1.2 2.7E-05 34.0 4.5 36 203-241 86-123 (132)
233 KOG1618 Predicted phosphatase 85.9 1.1 2.4E-05 39.8 4.2 51 9-65 19-78 (389)
234 TIGR01990 bPGM beta-phosphoglu 85.5 0.74 1.6E-05 37.3 2.8 27 23-58 1-27 (185)
235 TIGR01458 HAD-SF-IIA-hyp3 HAD- 85.4 3.3 7.1E-05 36.0 6.9 46 22-72 2-51 (257)
236 TIGR02247 HAD-1A3-hyp Epoxide 85.3 0.48 1E-05 39.6 1.6 34 205-241 155-188 (211)
237 PRK08238 hypothetical protein; 85.2 1 2.3E-05 42.9 4.0 43 201-256 126-168 (479)
238 COG4996 Predicted phosphatase 84.3 1.2 2.7E-05 34.3 3.3 14 22-35 1-14 (164)
239 KOG3120 Predicted haloacid deh 84.2 0.9 2E-05 38.3 2.7 87 190-282 151-250 (256)
240 KOG0203 Na+/K+ ATPase, alpha s 84.2 2.5 5.4E-05 42.5 6.1 37 224-265 707-746 (1019)
241 TIGR01656 Histidinol-ppas hist 84.0 1.1 2.3E-05 35.3 3.1 36 203-241 102-137 (147)
242 PHA02597 30.2 hypothetical pro 83.8 1.9 4.1E-05 35.5 4.6 14 21-34 2-15 (197)
243 PF00702 Hydrolase: haloacid d 83.4 0.52 1.1E-05 39.0 1.0 49 203-255 152-204 (215)
244 KOG3109 Haloacid dehalogenase- 83.3 1.3 2.7E-05 37.4 3.2 55 205-266 163-218 (244)
245 PLN02940 riboflavin kinase 82.8 2.3 5E-05 39.3 5.1 61 203-271 151-216 (382)
246 COG1011 Predicted hydrolase (H 82.5 0.81 1.8E-05 38.5 1.9 63 206-276 158-227 (229)
247 COG1011 Predicted hydrolase (H 81.4 6.1 0.00013 33.0 6.9 48 207-255 127-180 (229)
248 PF13419 HAD_2: Haloacid dehal 81.2 1.5 3.3E-05 34.6 3.0 36 203-241 134-169 (176)
249 PRK09456 ?-D-glucose-1-phospha 81.1 2.1 4.6E-05 35.4 3.9 36 203-241 142-177 (199)
250 TIGR02009 PGMB-YQAB-SF beta-ph 80.8 1.6 3.5E-05 35.2 3.1 28 22-58 2-29 (185)
251 PF11019 DUF2608: Protein of u 80.7 6.2 0.00013 34.3 6.7 52 201-255 160-213 (252)
252 TIGR01509 HAD-SF-IA-v3 haloaci 80.6 0.74 1.6E-05 37.1 0.9 34 205-241 143-176 (183)
253 PRK10748 flavin mononucleotide 78.9 5.9 0.00013 33.8 6.0 15 20-34 9-23 (238)
254 PRK10563 6-phosphogluconate ph 78.4 2 4.3E-05 36.0 3.0 15 20-34 3-17 (221)
255 TIGR01428 HAD_type_II 2-haloal 78.1 2.5 5.3E-05 34.8 3.3 13 22-34 2-14 (198)
256 KOG3120 Predicted haloacid deh 78.1 4 8.6E-05 34.6 4.4 21 16-36 8-28 (256)
257 PRK09456 ?-D-glucose-1-phospha 77.9 1.2 2.5E-05 36.9 1.3 14 22-35 1-14 (199)
258 TIGR01681 HAD-SF-IIIC HAD-supe 77.5 3.5 7.5E-05 31.6 3.8 34 203-239 90-125 (128)
259 TIGR01686 FkbH FkbH-like domai 77.1 4.2 9.1E-05 36.5 4.8 36 203-241 87-122 (320)
260 KOG2882 p-Nitrophenyl phosphat 77.0 4.2 9E-05 36.0 4.5 49 21-75 22-71 (306)
261 TIGR01548 HAD-SF-IA-hyp1 haloa 76.7 2.3 5.1E-05 35.0 2.8 27 23-58 2-28 (197)
262 TIGR01509 HAD-SF-IA-v3 haloaci 76.6 4.3 9.4E-05 32.5 4.4 12 23-34 1-12 (183)
263 PLN02919 haloacid dehalogenase 76.6 1.2 2.6E-05 46.8 1.2 61 203-271 219-285 (1057)
264 TIGR01452 PGP_euk phosphoglyco 76.2 4.8 0.0001 35.3 4.8 43 205-255 205-249 (279)
265 PRK10725 fructose-1-P/6-phosph 74.9 3.1 6.8E-05 33.7 3.1 29 21-58 5-33 (188)
266 PRK10444 UMP phosphatase; Prov 74.7 11 0.00024 32.5 6.6 62 203-271 175-245 (248)
267 TIGR01668 YqeG_hyp_ppase HAD s 74.2 12 0.00025 30.2 6.3 45 203-255 92-138 (170)
268 TIGR02247 HAD-1A3-hyp Epoxide 74.2 6.6 0.00014 32.6 5.0 14 21-34 2-15 (211)
269 TIGR01549 HAD-SF-IA-v1 haloaci 74.0 3.7 8.1E-05 32.1 3.3 27 23-58 1-27 (154)
270 COG2503 Predicted secreted aci 73.7 6.3 0.00014 33.9 4.6 30 6-35 64-93 (274)
271 cd00218 GlcAT-I Beta1,3-glucur 73.6 7.6 0.00016 33.0 5.0 40 203-245 79-120 (223)
272 PF04312 DUF460: Protein of un 72.6 4 8.7E-05 31.8 2.9 63 22-97 44-109 (138)
273 COG1608 Predicted archaeal kin 71.4 21 0.00045 30.7 7.2 68 5-76 148-217 (252)
274 TIGR02252 DREG-2 REG-2-like, H 71.2 4.2 9.2E-05 33.5 3.1 14 22-35 1-14 (203)
275 TIGR01691 enolase-ppase 2,3-di 69.2 9.4 0.0002 32.4 4.8 36 203-241 153-188 (220)
276 PF13382 Adenine_deam_C: Adeni 68.9 9.5 0.00021 31.1 4.5 62 224-288 67-137 (171)
277 TIGR01993 Pyr-5-nucltdase pyri 68.9 7.1 0.00015 31.6 3.9 38 203-242 107-151 (184)
278 PF06888 Put_Phosphatase: Puta 68.0 3.1 6.7E-05 35.7 1.6 13 23-35 2-14 (234)
279 PLN02177 glycerol-3-phosphate 67.5 3.9 8.5E-05 39.2 2.3 16 20-35 21-36 (497)
280 COG5083 SMP2 Uncharacterized p 67.4 4.1 8.9E-05 37.9 2.3 56 19-74 373-435 (580)
281 smart00577 CPDc catalytic doma 66.9 2.9 6.4E-05 32.9 1.2 30 208-240 104-133 (148)
282 cd04256 AAK_P5CS_ProBA AAK_P5C 66.4 23 0.00049 31.3 6.8 71 5-75 179-249 (284)
283 COG4483 Uncharacterized protei 66.4 5 0.00011 26.8 1.9 28 206-240 5-32 (68)
284 TIGR01525 ATPase-IB_hvy heavy 66.3 13 0.00029 36.1 5.8 59 16-76 359-419 (556)
285 PF09949 DUF2183: Uncharacteri 66.1 14 0.0003 27.2 4.5 66 171-241 12-84 (100)
286 TIGR01493 HAD-SF-IA-v2 Haloaci 65.4 5.4 0.00012 31.9 2.5 13 23-35 1-13 (175)
287 PLN02811 hydrolase 65.0 10 0.00022 31.8 4.2 60 203-270 138-205 (220)
288 TIGR01457 HAD-SF-IIA-hyp2 HAD- 64.8 13 0.00029 32.0 5.0 45 203-255 179-225 (249)
289 PF03360 Glyco_transf_43: Glyc 64.8 12 0.00026 31.5 4.4 38 205-245 63-102 (207)
290 PHA02530 pseT polynucleotide k 64.6 11 0.00025 33.1 4.7 36 203-241 252-288 (300)
291 PF11019 DUF2608: Protein of u 63.2 12 0.00025 32.5 4.3 28 9-36 6-35 (252)
292 KOG0208 Cation transport ATPas 63.2 8 0.00017 39.7 3.6 62 203-276 840-903 (1140)
293 PF06189 5-nucleotidase: 5'-nu 63.2 13 0.00028 32.3 4.4 56 20-75 120-203 (264)
294 TIGR01544 HAD-SF-IE haloacid d 61.7 26 0.00057 30.9 6.2 38 202-242 191-231 (277)
295 KOG3040 Predicted sugar phosph 61.6 11 0.00024 31.7 3.6 51 19-75 5-59 (262)
296 PRK05446 imidazole glycerol-ph 61.0 14 0.0003 33.9 4.5 38 201-241 103-140 (354)
297 PRK12686 carbamate kinase; Rev 61.0 19 0.00042 32.3 5.3 68 6-76 212-279 (312)
298 KOG2134 Polynucleotide kinase 60.7 8.1 0.00018 35.5 2.9 48 18-65 72-127 (422)
299 COG2216 KdpB High-affinity K+ 60.4 3.8 8.3E-05 39.0 0.8 50 203-264 497-548 (681)
300 TIGR01511 ATPase-IB1_Cu copper 60.4 17 0.00036 35.5 5.3 57 18-76 382-439 (562)
301 PLN02499 glycerol-3-phosphate 60.3 8.7 0.00019 36.6 3.1 17 18-34 5-21 (498)
302 COG2179 Predicted hydrolase of 60.0 7.8 0.00017 31.3 2.4 47 201-254 92-139 (175)
303 KOG0204 Calcium transporting A 59.6 8.7 0.00019 38.9 3.1 54 202-267 725-781 (1034)
304 cd04237 AAK_NAGS-ABP AAK_NAGS- 58.6 21 0.00045 31.5 5.1 65 5-76 181-245 (280)
305 PTZ00489 glutamate 5-kinase; P 58.3 55 0.0012 28.6 7.6 30 6-35 149-178 (264)
306 TIGR01685 MDP-1 magnesium-depe 57.4 11 0.00024 30.7 3.0 23 216-241 127-149 (174)
307 cd04239 AAK_UMPK-like AAK_UMPK 55.0 37 0.0008 28.7 6.0 71 6-76 134-219 (229)
308 PLN02919 haloacid dehalogenase 54.1 23 0.00051 37.4 5.4 30 20-58 74-103 (1057)
309 TIGR01456 CECR5 HAD-superfamil 53.6 48 0.001 29.7 6.7 47 224-275 265-320 (321)
310 cd04252 AAK_NAGK-fArgBP AAK_NA 53.4 35 0.00075 29.4 5.6 63 5-75 150-213 (248)
311 TIGR00761 argB acetylglutamate 51.7 34 0.00073 29.0 5.2 64 6-76 156-219 (231)
312 PRK12314 gamma-glutamyl kinase 51.7 69 0.0015 28.0 7.2 30 6-35 156-185 (266)
313 TIGR01664 DNA-3'-Pase DNA 3'-p 51.4 16 0.00035 29.4 3.0 35 204-241 110-154 (166)
314 COG4359 Uncharacterized conser 50.8 12 0.00026 30.9 2.1 36 198-241 143-178 (220)
315 PRK14558 pyrH uridylate kinase 50.8 44 0.00096 28.3 5.8 70 7-76 135-219 (231)
316 TIGR01460 HAD-SF-IIA Haloacid 50.8 27 0.00058 29.8 4.5 36 203-241 189-226 (236)
317 cd04242 AAK_G5K_ProB AAK_G5K_P 50.3 29 0.00063 29.9 4.6 30 6-35 144-173 (251)
318 PRK00358 pyrH uridylate kinase 50.2 50 0.0011 27.9 6.1 71 6-76 136-221 (231)
319 PF06014 DUF910: Bacterial pro 50.1 7.5 0.00016 25.9 0.7 28 206-240 5-32 (62)
320 TIGR01092 P5CS delta l-pyrroli 49.6 54 0.0012 33.1 7.0 70 6-76 169-264 (715)
321 cd04253 AAK_UMPK-PyrH-Pf AAK_U 49.6 72 0.0016 26.8 6.9 31 5-35 116-146 (221)
322 KOG1605 TFIIF-interacting CTD 48.9 11 0.00023 33.0 1.6 17 18-34 86-102 (262)
323 PF12710 HAD: haloacid dehalog 48.7 14 0.0003 29.8 2.2 36 50-85 96-135 (192)
324 cd04254 AAK_UMPK-PyrH-Ec UMP k 48.0 43 0.00092 28.5 5.3 72 5-76 135-221 (231)
325 PRK14058 acetylglutamate/acety 48.0 67 0.0014 28.0 6.6 64 5-75 169-232 (268)
326 TIGR00735 hisF imidazoleglycer 47.6 77 0.0017 27.3 6.9 62 9-70 112-180 (254)
327 TIGR02076 pyrH_arch uridylate 47.4 87 0.0019 26.3 7.1 31 5-35 116-146 (221)
328 TIGR01178 ade adenine deaminas 46.9 58 0.0013 31.8 6.5 61 224-287 445-514 (552)
329 TIGR01106 ATPase-IIC_X-K sodiu 46.1 25 0.00055 36.9 4.2 34 43-76 568-602 (997)
330 KOG0209 P-type ATPase [Inorgan 45.4 16 0.00035 37.0 2.4 28 224-256 808-835 (1160)
331 TIGR02075 pyrH_bact uridylate 45.3 57 0.0012 27.7 5.6 71 6-76 137-223 (233)
332 KOG3085 Predicted hydrolase (H 45.0 26 0.00056 30.1 3.4 41 209-256 175-216 (237)
333 cd00231 ZipA ZipA C-terminal d 44.8 12 0.00026 29.0 1.2 42 5-54 87-128 (130)
334 cd04251 AAK_NAGK-UC AAK_NAGK-U 44.8 74 0.0016 27.5 6.3 30 5-34 165-194 (257)
335 PRK14557 pyrH uridylate kinase 44.5 93 0.002 26.9 6.8 71 7-77 142-228 (247)
336 PRK12454 carbamate kinase-like 44.3 53 0.0012 29.5 5.4 67 7-76 215-281 (313)
337 smart00775 LNS2 LNS2 domain. T 44.3 35 0.00076 27.1 3.9 37 203-241 102-138 (157)
338 smart00771 ZipA_C ZipA, C-term 44.3 12 0.00026 29.0 1.2 42 4-53 87-128 (131)
339 cd04235 AAK_CK AAK_CK: Carbama 44.0 52 0.0011 29.5 5.3 67 7-76 211-277 (308)
340 PF04354 ZipA_C: ZipA, C-termi 44.0 8.4 0.00018 29.8 0.3 43 4-54 87-129 (131)
341 cd04731 HisF The cyclase subun 43.8 86 0.0019 26.7 6.6 79 8-89 108-202 (243)
342 COG1576 Uncharacterized conser 43.7 83 0.0018 25.1 5.8 53 13-75 60-113 (155)
343 PF13419 HAD_2: Haloacid dehal 42.5 21 0.00046 27.8 2.4 35 42-76 76-111 (176)
344 PRK09411 carbamate kinase; Rev 42.4 57 0.0012 29.1 5.2 63 7-76 203-265 (297)
345 PLN02458 transferase, transfer 42.3 45 0.00098 30.1 4.5 36 204-245 190-227 (346)
346 COG0546 Gph Predicted phosphat 41.4 28 0.00061 29.2 3.1 33 44-76 90-123 (220)
347 KOG4549 Magnesium-dependent ph 39.9 65 0.0014 24.9 4.4 54 21-74 18-76 (144)
348 KOG3085 Predicted hydrolase (H 39.8 34 0.00073 29.4 3.3 16 19-34 5-20 (237)
349 KOG1476 Beta-1,3-glucuronyltra 39.7 57 0.0012 29.2 4.7 38 205-245 165-206 (330)
350 KOG2914 Predicted haloacid-hal 39.2 19 0.00041 30.6 1.7 27 212-241 161-188 (222)
351 COG1435 Tdk Thymidine kinase [ 39.0 53 0.0011 27.4 4.2 53 4-67 65-118 (201)
352 TIGR00746 arcC carbamate kinas 38.9 80 0.0017 28.3 5.7 61 12-75 217-277 (310)
353 PRK14556 pyrH uridylate kinase 38.9 94 0.002 26.9 5.9 67 10-76 156-237 (249)
354 KOG0205 Plasma membrane H+-tra 38.6 19 0.00042 35.5 1.8 61 192-267 564-626 (942)
355 COG1125 OpuBA ABC-type proline 37.9 63 0.0014 28.4 4.6 60 185-250 22-81 (309)
356 TIGR01497 kdpB K+-transporting 37.7 74 0.0016 31.9 5.7 57 17-75 422-479 (675)
357 PRK11033 zntA zinc/cadmium/mer 37.4 77 0.0017 32.2 5.9 58 17-76 544-602 (741)
358 COG5663 Uncharacterized conser 36.8 17 0.00036 29.5 0.9 70 192-279 116-190 (194)
359 PRK12354 carbamate kinase; Rev 36.3 52 0.0011 29.5 4.1 64 6-76 205-268 (307)
360 PRK10027 cryptic adenine deami 36.2 1E+02 0.0023 30.3 6.5 61 224-287 477-546 (588)
361 cd04241 AAK_FomA-like AAK_FomA 36.2 1.2E+02 0.0027 25.9 6.4 68 6-75 149-218 (252)
362 cd02115 AAK Amino Acid Kinases 35.7 84 0.0018 26.6 5.3 30 6-35 152-181 (248)
363 PRK04128 1-(5-phosphoribosyl)- 35.5 53 0.0011 28.0 3.9 48 20-77 43-93 (228)
364 PRK05279 N-acetylglutamate syn 35.0 72 0.0016 30.0 5.1 29 5-33 188-216 (441)
365 PRK13587 1-(5-phosphoribosyl)- 34.9 1.5E+02 0.0032 25.3 6.6 6 22-27 126-131 (234)
366 CHL00202 argB acetylglutamate 34.8 86 0.0019 27.6 5.2 66 6-76 182-247 (284)
367 cd04260 AAK_AKi-DapG-BS AAK_AK 34.2 1.1E+02 0.0024 26.1 5.7 54 5-58 155-209 (244)
368 PRK10886 DnaA initiator-associ 34.0 2.5E+02 0.0053 23.3 7.5 32 45-76 122-154 (196)
369 cd01295 AdeC Adenine deaminase 33.9 1.1E+02 0.0023 28.6 6.0 61 224-287 324-393 (422)
370 PF02533 PsbK: Photosystem II 33.9 20 0.00043 21.6 0.7 16 1-16 5-20 (42)
371 COG0241 HisB Histidinol phosph 33.6 48 0.001 27.3 3.1 36 203-241 106-141 (181)
372 cd04255 AAK_UMPK-MosAB AAK_UMP 33.3 2.1E+02 0.0045 24.9 7.3 29 6-34 163-191 (262)
373 PF12447 DUF3683: Protein of u 32.6 65 0.0014 24.2 3.4 30 44-77 24-53 (115)
374 PRK04570 cell division protein 32.6 25 0.00054 30.0 1.3 41 5-53 182-222 (243)
375 PF01380 SIS: SIS domain SIS d 32.1 64 0.0014 24.0 3.6 46 18-76 52-98 (131)
376 TIGR01459 HAD-SF-IIA-hyp4 HAD- 31.9 70 0.0015 27.2 4.1 36 203-241 196-233 (242)
377 cd04249 AAK_NAGK-NC AAK_NAGK-N 31.0 1.3E+02 0.0027 25.9 5.6 28 6-34 157-184 (252)
378 PRK12352 putative carbamate ki 30.7 1.2E+02 0.0026 27.3 5.5 60 13-75 223-282 (316)
379 TIGR01512 ATPase-IB2_Cd heavy 30.7 85 0.0018 30.4 4.9 54 21-76 342-397 (536)
380 cd04234 AAK_AK AAK_AK: Amino A 30.3 1E+02 0.0023 26.0 4.9 54 6-59 138-192 (227)
381 PF01282 Ribosomal_S24e: Ribos 30.2 1.1E+02 0.0025 21.5 4.2 33 194-229 3-37 (84)
382 cd04240 AAK_UC AAK_UC: Unchara 29.7 1.4E+02 0.0031 24.8 5.5 70 5-76 115-193 (203)
383 PRK12353 putative amino acid k 29.7 1.1E+02 0.0024 27.5 5.0 66 7-75 215-280 (314)
384 TIGR00071 hisT_truA pseudourid 29.4 79 0.0017 26.9 3.9 55 21-75 2-57 (227)
385 PLN02418 delta-1-pyrroline-5-c 29.0 2E+02 0.0043 29.1 7.2 30 6-35 177-206 (718)
386 KOG2961 Predicted hydrolase (H 28.9 1.2E+02 0.0027 24.3 4.5 35 20-58 42-76 (190)
387 PRK05429 gamma-glutamyl kinase 28.8 2.1E+02 0.0046 26.3 6.9 30 6-35 153-182 (372)
388 TIGR01027 proB glutamate 5-kin 28.1 2.8E+02 0.006 25.5 7.5 30 6-35 145-174 (363)
389 PRK14024 phosphoribosyl isomer 28.0 2.1E+02 0.0045 24.4 6.4 75 10-89 114-199 (241)
390 PLN02512 acetylglutamate kinas 27.9 1.4E+02 0.003 26.7 5.4 67 5-76 206-272 (309)
391 KOG4779 Predicted membrane pro 27.7 41 0.00088 22.9 1.5 25 209-236 25-49 (82)
392 KOG2882 p-Nitrophenyl phosphat 27.7 58 0.0013 29.0 2.8 41 206-253 228-269 (306)
393 cd04236 AAK_NAGS-Urea AAK_NAGS 27.4 1.6E+02 0.0034 25.9 5.5 63 6-76 174-240 (271)
394 PRK02083 imidazole glycerol ph 27.2 2.6E+02 0.0056 23.9 6.9 79 8-89 111-206 (253)
395 TIGR01691 enolase-ppase 2,3-di 27.1 81 0.0018 26.7 3.6 35 42-76 94-129 (220)
396 PF06342 DUF1057: Alpha/beta h 27.1 1.3E+02 0.0029 26.7 4.9 66 183-256 71-136 (297)
397 TIGR00067 glut_race glutamate 26.4 2.9E+02 0.0062 23.8 7.0 31 197-233 4-34 (251)
398 PRK13402 gamma-glutamyl kinase 25.5 1.3E+02 0.0028 27.7 4.9 29 7-35 150-178 (368)
399 COG0101 TruA Pseudouridylate s 25.3 1.2E+02 0.0027 26.5 4.5 54 21-74 3-57 (266)
400 PRK10671 copA copper exporting 25.3 1.7E+02 0.0037 30.1 6.2 57 18-76 627-684 (834)
401 TIGR00705 SppA_67K signal pept 25.0 2.2E+02 0.0049 28.0 6.7 53 18-76 91-143 (584)
402 COG0548 ArgB Acetylglutamate k 25.0 1.3E+02 0.0028 26.3 4.5 62 7-74 165-226 (265)
403 PLN02811 hydrolase 24.8 1E+02 0.0022 25.6 3.8 31 43-73 78-109 (220)
404 PRK04017 hypothetical protein; 24.8 2E+02 0.0043 22.3 5.0 44 47-91 8-54 (132)
405 PRK01178 rps24e 30S ribosomal 24.1 2.1E+02 0.0046 21.0 4.8 35 192-229 19-55 (99)
406 PF02590 SPOUT_MTase: Predicte 24.0 1.3E+02 0.0028 24.0 4.0 51 12-72 59-111 (155)
407 TIGR01533 lipo_e_P4 5'-nucleot 23.6 1.1E+02 0.0023 26.9 3.7 37 193-237 167-203 (266)
408 TIGR01672 AphA HAD superfamily 23.4 52 0.0011 28.2 1.8 17 225-241 187-203 (237)
409 cd01455 vWA_F11C1-5a_type Von 23.4 4.3E+02 0.0094 21.9 8.0 56 206-280 132-187 (191)
410 PRK11009 aphA acid phosphatase 23.2 48 0.001 28.5 1.5 18 224-241 186-203 (237)
411 PRK01122 potassium-transportin 22.8 1.9E+02 0.004 29.1 5.7 57 17-75 421-478 (679)
412 KOG0257 Kynurenine aminotransf 22.7 2.6E+02 0.0057 26.2 6.1 60 7-73 159-218 (420)
413 COG3839 MalK ABC-type sugar tr 22.7 1.1E+02 0.0023 28.0 3.6 48 185-236 24-71 (338)
414 cd05008 SIS_GlmS_GlmD_1 SIS (S 22.7 1.4E+02 0.003 22.1 3.9 34 43-76 57-91 (126)
415 KOG3109 Haloacid dehalogenase- 22.6 1.2E+02 0.0025 25.9 3.6 32 19-55 13-44 (244)
416 COG1433 Uncharacterized conser 22.0 3.3E+02 0.0072 20.7 5.7 43 202-254 51-93 (121)
417 cd04261 AAK_AKii-LysC-BS AAK_A 22.0 1.7E+02 0.0037 24.8 4.7 54 5-58 150-204 (239)
418 TIGR00090 iojap_ybeB iojap-lik 21.9 72 0.0016 23.3 2.0 17 60-76 31-47 (99)
419 COG0436 Aspartate/tyrosine/aro 21.8 2.6E+02 0.0057 25.8 6.2 59 7-72 150-208 (393)
420 cd00006 PTS_IIA_man PTS_IIA, P 21.8 3.3E+02 0.0072 20.3 5.8 18 59-76 83-100 (122)
421 PRK00269 zipA cell division pr 21.6 49 0.0011 29.3 1.2 41 5-53 238-278 (293)
422 PRK02553 psbK photosystem II r 21.6 27 0.00059 21.3 -0.2 17 1-17 8-24 (45)
423 PRK02228 V-type ATP synthase s 21.1 1.7E+02 0.0036 21.4 3.8 17 224-241 2-18 (100)
424 PRK04296 thymidine kinase; Pro 21.1 3E+02 0.0065 22.4 5.9 28 42-69 88-116 (190)
425 PF09047 MEF2_binding: MEF2 bi 21.0 1E+02 0.0023 17.3 2.0 20 31-55 1-20 (35)
426 PRK13938 phosphoheptose isomer 21.0 3.7E+02 0.008 22.2 6.4 30 45-74 126-156 (196)
427 TIGR02244 HAD-IG-Ncltidse HAD 21.0 1.4E+02 0.0029 27.3 4.0 34 44-77 185-219 (343)
428 TIGR01522 ATPase-IIA2_Ca golgi 20.8 2.1E+02 0.0046 29.7 5.9 57 17-75 499-561 (884)
429 PRK00103 rRNA large subunit me 20.7 3.3E+02 0.0071 21.7 5.7 40 20-69 67-108 (157)
430 PF13207 AAA_17: AAA domain; P 20.3 1.2E+02 0.0025 22.2 3.0 28 196-230 5-32 (121)
431 COG1001 AdeC Adenine deaminase 20.3 2.9E+02 0.0063 27.1 6.1 60 224-286 475-543 (584)
432 cd04723 HisA_HisF Phosphoribos 20.1 4.3E+02 0.0092 22.4 6.8 9 21-29 160-168 (233)
No 1
>PLN02580 trehalose-phosphatase
Probab=100.00 E-value=1.5e-46 Score=337.92 Aligned_cols=283 Identities=56% Similarity=0.979 Sum_probs=236.3
Q ss_pred CCccchhhHHHHHHhhcCCcEEEEEecCCccccCcCCCCCCCCCHHHHHHHHHHhhcCCEEEEcCCChhhHhhhcCCCCe
Q 040896 2 KHPSALDTFDRMVAAAKGKKIVVFLDYDGTLSPIVEDPDKAFMSDTMRMAVHEVAHFFPTAIVSGRCLDKVSRFVQLKNV 81 (288)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~li~~DlDGTL~~~~~~~~~~~i~~~~~~aL~~L~~~~~v~i~TGR~~~~l~~~~~~~~~ 81 (288)
|||||+..||+|...+.++++++|+||||||.++..+|+...++++++++|++|.+...++|+|||++..+.++++.+++
T Consensus 100 ~~p~al~~~~~~~~~~~~k~~~LfLDyDGTLaPIv~~Pd~A~~s~~~~~aL~~La~~~~VAIVSGR~~~~L~~~l~~~~l 179 (384)
T PLN02580 100 KYPSALTSFEQIANFAKGKKIALFLDYDGTLSPIVDDPDRALMSDAMRSAVKNVAKYFPTAIISGRSRDKVYELVGLTEL 179 (384)
T ss_pred hCcHHHHHHHHHHHHhhcCCeEEEEecCCccCCCCCCcccccCCHHHHHHHHHHhhCCCEEEEeCCCHHHHHHHhCCCCc
Confidence 79999999999999999999999999999999999999999999999999999999989999999999999999998889
Q ss_pred EEEccCceeEeCCCCCcc-cCCCCCcccccccCCCceeccCCCccchhHHHHHHHHHHHHhhccCCeEEEecCceEEEec
Q 040896 82 VYAGSHGMDISTPAGSLK-QNNPKHETRTVDEQGNEVVHFQPAQEFLPQIQEMIQVLEEKIKTIKGATVEDNKFCISVHF 160 (288)
Q Consensus 82 ~~i~~nGa~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~ 160 (288)
+++|+||+++..+.+... ..|. .++...+..+.++..+++..+|...++++.+.+.++.+..+|.++|.+.++++|||
T Consensus 180 ~laGsHG~e~~~p~~~~~~~~~~-~~~~~~~~~g~~~~~~~~a~~~~~~i~~v~~~l~e~~~~~pGs~VE~K~~svavHY 258 (384)
T PLN02580 180 YYAGSHGMDIMGPVRESVSNDHP-NCIKSTDQQGKEVNLFQPASEFLPMIDEVFRSLVESTKDIKGAKVENHKFCVSVHY 258 (384)
T ss_pred cEEEeCCceeecCCCCccccccc-ccccccccccccccccccchhhhhhHHHHHHHHHHHhccCCCCEEEecCcEEEEEe
Confidence 999999999987644221 1232 12222222233343344555555566777777777778889999999999999999
Q ss_pred cCCCcccHHHHHHHHHHHHHhCCCeEEeCCceEEEEeC-CCCCCHHHHHHHHHHhcCCCCCCCceeEEEcCCcccHHHHH
Q 040896 161 RRVDEDDINTLQEMVNSIVEAYPNFRISGGKKVMEIRP-CIDWDKGRALEYLLDTFGFNNASDFLPLYIGDDKTDEDAFK 239 (288)
Q Consensus 161 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ieI~~-~~~~sKg~al~~l~~~~~~~~~~~~~vv~~GDs~ND~~Ml~ 239 (288)
|++++..+..+.+.+++.+..++++.+..|+.++||.| . ++|||.||++|++.++++......+++|||+.||++||+
T Consensus 259 R~a~~~~~~~~~~~l~~~l~~~~~l~v~~Gk~vlEVrP~~-g~~KG~Av~~Ll~~~g~~~~d~~~pi~iGDD~TDedmF~ 337 (384)
T PLN02580 259 RNVDEKNWPLVAQCVHDVLKKYPRLRLTHGRKVLEVRPVI-DWNKGKAVEFLLESLGLSNCDDVLPIYIGDDRTDEDAFK 337 (384)
T ss_pred CCCCchHHHHHHHHHHHHHHhCCceEEEeCCeEEEEecCC-CCCHHHHHHHHHHhcCCCcccceeEEEECCCchHHHHHH
Confidence 99886656667777777777777788888999999999 7 999999999999999987531113599999999999999
Q ss_pred HHHhcCCceEEEEecCCCCccceEEeCChhHHHHHHHHHHHHhhhCC
Q 040896 240 VIRHMGRGYPIIVSSVPRETKALYSLRDPDEVMSFLRRLARWKKSLG 286 (288)
Q Consensus 240 ~~~~~~~g~~v~v~na~~~~~A~~~~~~~~~v~~~l~~~~~~~~~~~ 286 (288)
.++..+.|++|+|+|+..++.|+|.+.++++|.++|+.++.|++.++
T Consensus 338 ~L~~~~~G~~I~Vgn~~~~t~A~y~L~dp~eV~~~L~~L~~~~~~~~ 384 (384)
T PLN02580 338 VLREGNRGYGILVSSVPKESNAFYSLRDPSEVMEFLKSLVTWKKSEA 384 (384)
T ss_pred hhhccCCceEEEEecCCCCccceEEcCCHHHHHHHHHHHHHhhhcCC
Confidence 98765458999999998899999999999999999999999998763
No 2
>PLN03017 trehalose-phosphatase
Probab=100.00 E-value=4.7e-44 Score=319.03 Aligned_cols=273 Identities=54% Similarity=0.985 Sum_probs=228.6
Q ss_pred CCccchhhHHHHHHhhcCCcEEEEEecCCccccCcCCCCCCCCCHHHHHHHHHHhhcCCEEEEcCCChhhHhhhcCCCCe
Q 040896 2 KHPSALDTFDRMVAAAKGKKIVVFLDYDGTLSPIVEDPDKAFMSDTMRMAVHEVAHFFPTAIVSGRCLDKVSRFVQLKNV 81 (288)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~li~~DlDGTL~~~~~~~~~~~i~~~~~~aL~~L~~~~~v~i~TGR~~~~l~~~~~~~~~ 81 (288)
+||||+..||++...+..++.+||+||||||++...+|+...++++++++|++|.+...|+|+|||++..+.+++++.+.
T Consensus 92 ~~psal~~~~~~~~~~~~k~~llflD~DGTL~Piv~~p~~a~i~~~~~~aL~~La~~~~vaIvSGR~~~~l~~~~~l~~l 171 (366)
T PLN03017 92 QHPSALEMFEQIMEASRGKQIVMFLDYDGTLSPIVDDPDKAFMSSKMRRTVKKLAKCFPTAIVTGRCIDKVYNFVKLAEL 171 (366)
T ss_pred hCChHHHHHHHHHHHhcCCCeEEEEecCCcCcCCcCCcccccCCHHHHHHHHHHhcCCcEEEEeCCCHHHHHHhhcccCc
Confidence 79999999999999999999999999999999776656666899999999999996679999999999999999877778
Q ss_pred EEEccCceeEeCCCCCcccCCCCCcccccccCCCceeccCCCccchhHHHHHHHHHHHHhhccCCeEEEecCceEEEecc
Q 040896 82 VYAGSHGMDISTPAGSLKQNNPKHETRTVDEQGNEVVHFQPAQEFLPQIQEMIQVLEEKIKTIKGATVEDNKFCISVHFR 161 (288)
Q Consensus 82 ~~i~~nGa~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~ 161 (288)
+++|+||+++..+++... .|. .+.++...++..+|...++.+.+.+.++.+.++|.++|.++++++||||
T Consensus 172 ~l~g~hGa~i~~p~~~~~-~~~---------~~~~~~~~~~~~~~~~~i~~v~~~L~~~~~~~pGa~VE~K~~~vavHyR 241 (366)
T PLN03017 172 YYAGSHGMDIKGPAKGFS-RHK---------RVKQSLLYQPANDYLPMIDEVYRQLLEKTKSTPGAKVENHKFCASVHFR 241 (366)
T ss_pred eEEEcCCcEEecCCCcce-ecc---------ccccccccccchhhHHHHHHHHHHHHHHHhcCCCCEEEecCcEEEEEcC
Confidence 999999999987654321 010 0111122334444555667777777777788999999999999999999
Q ss_pred CCCcccHHHHHHHHHHHHHhCCCeEEeCCceEEEEeCCCCCCHHHHHHHHHHhcCCCCCCCceeEEEcCCcccHHHHHHH
Q 040896 162 RVDEDDINTLQEMVNSIVEAYPNFRISGGKKVMEIRPCIDWDKGRALEYLLDTFGFNNASDFLPLYIGDDKTDEDAFKVI 241 (288)
Q Consensus 162 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ieI~~~~~~sKg~al~~l~~~~~~~~~~~~~vv~~GDs~ND~~Ml~~~ 241 (288)
++++..+.++...++..++.++++.+..|+..+||.|.+++|||.|+++|++.+++.....+.++++||+..|++||+.+
T Consensus 242 ~ad~~~~~~l~~~~~~vl~~~~~l~v~~GkkVlEvRP~~~~dKG~Av~~LL~~l~~~~~~~~~pvyiGDD~TDEDaF~~L 321 (366)
T PLN03017 242 CVDEKKWSELVLQVRSVLKNFPTLKLTQGRKVFEIRPMIEWDKGKALEFLLESLGFGNTNNVFPVYIGDDRTDEDAFKML 321 (366)
T ss_pred cCCHHHHHHHHHHHHHHHHhCCCcEEeCCCeEEEecCCCCCCHHHHHHHHHHhcccccCCCceEEEeCCCCccHHHHHHH
Confidence 98876556677777777887877899999999999994489999999999999987643234799999999999999999
Q ss_pred HhcCCceEEEEecCCCCccceEEeCChhHHHHHHHHHHHHhhh
Q 040896 242 RHMGRGYPIIVSSVPRETKALYSLRDPDEVMSFLRRLARWKKS 284 (288)
Q Consensus 242 ~~~~~g~~v~v~na~~~~~A~~~~~~~~~v~~~l~~~~~~~~~ 284 (288)
+..++|++|.||....++.|.|.+.++++|.++|+.++.|++.
T Consensus 322 ~~~~~G~gI~VG~~~k~T~A~y~L~dp~eV~~fL~~L~~~~~~ 364 (366)
T PLN03017 322 RDRGEGFGILVSKFPKDTDASYSLQDPSEVMDFLARLVEWKQM 364 (366)
T ss_pred hhcCCceEEEECCCCCCCcceEeCCCHHHHHHHHHHHHHHHhh
Confidence 8766689999998766799999999999999999999999875
No 3
>PLN02151 trehalose-phosphatase
Probab=100.00 E-value=1.3e-42 Score=308.95 Aligned_cols=274 Identities=55% Similarity=0.956 Sum_probs=228.5
Q ss_pred CCCccchhhHHHHHHhhcCCcEEEEEecCCccccCcCCCCCCCCCHHHHHHHHHHhhcCCEEEEcCCChhhHhhhcCCCC
Q 040896 1 AKHPSALDTFDRMVAAAKGKKIVVFLDYDGTLSPIVEDPDKAFMSDTMRMAVHEVAHFFPTAIVSGRCLDKVSRFVQLKN 80 (288)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~li~~DlDGTL~~~~~~~~~~~i~~~~~~aL~~L~~~~~v~i~TGR~~~~l~~~~~~~~ 80 (288)
.+||||+..||++...++.++.++|+||||||++...+|+...++++++++|++|.+...|+|+|||++..+.+++++++
T Consensus 78 ~~~p~a~~~~~~~~~~~~~~~~ll~lDyDGTL~PIv~~P~~A~~~~~~~~aL~~La~~~~vaIvSGR~~~~l~~~~~~~~ 157 (354)
T PLN02151 78 KEHPSALNMFEEILHKSEGKQIVMFLDYDGTLSPIVDDPDRAFMSKKMRNTVRKLAKCFPTAIVSGRCREKVSSFVKLTE 157 (354)
T ss_pred HhCChHHHHHHHHHHhhcCCceEEEEecCccCCCCCCCcccccCCHHHHHHHHHHhcCCCEEEEECCCHHHHHHHcCCcc
Confidence 37999999999999999999999999999999998888888899999999999999778999999999999999999888
Q ss_pred eEEEccCceeEeCCCCCcccCCCCCcccccccCCCceeccCCCccchhHHHHHHHHHHHHhhccCCeEEEecCceEEEec
Q 040896 81 VVYAGSHGMDISTPAGSLKQNNPKHETRTVDEQGNEVVHFQPAQEFLPQIQEMIQVLEEKIKTIKGATVEDNKFCISVHF 160 (288)
Q Consensus 81 ~~~i~~nGa~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~ 160 (288)
++++|+||+++..+++.. .|.+. ..+...++..+|...+..+.+.+.+..+.++|.++|.+.++++|||
T Consensus 158 l~laGsHG~e~~~p~~g~--~~~~~---------~~~~~~~~~~~~~~~i~~v~~~l~~~~~~~pG~~VE~K~~slavHY 226 (354)
T PLN02151 158 LYYAGSHGMDIKGPEQGS--KYKKE---------NQSLLCQPATEFLPVINEVYKKLVEKTKSIPGAKVENNKFCASVHF 226 (354)
T ss_pred ceEEEeCCceeecCCCCc--ccccc---------ccccccccchhhHHHHHHHHHHHHHHHhcCCCCEEEecCcEEEEEe
Confidence 999999999988764321 12110 0111123344444556666677766667899999999999999999
Q ss_pred cCCCcccHHHHHHHHHHHHHhCCCeEEeCCceEEEEeCCCCCCHHHHHHHHHHhcCCCCCCCceeEEEcCCcccHHHHHH
Q 040896 161 RRVDEDDINTLQEMVNSIVEAYPNFRISGGKKVMEIRPCIDWDKGRALEYLLDTFGFNNASDFLPLYIGDDKTDEDAFKV 240 (288)
Q Consensus 161 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ieI~~~~~~sKg~al~~l~~~~~~~~~~~~~vv~~GDs~ND~~Ml~~ 240 (288)
|++++..+..+.+.+++++..++++.+..|+..+||.|..++|||.|+++|++.+++.......++++||+..|++||+.
T Consensus 227 R~a~~~~~~~l~~~l~~v~~~~~~l~v~~GkkVvEvrP~~~~dKG~Av~~Ll~~~~~~~~~~~~pvyiGDD~TDEDaF~~ 306 (354)
T PLN02151 227 RCVEENKWSDLANQVRSVLKNYPKLMLTQGRKVLEIRPIIKWDKGKALEFLLESLGYANCTDVFPIYIGDDRTDEDAFKI 306 (354)
T ss_pred CCCChHHHHHHHHHHHHHHhhCCCcEEecCCEEEEEeCCCCCCHHHHHHHHHHhcccccCCCCeEEEEcCCCcHHHHHHH
Confidence 99876545556667777777777788999999999999438999999999999988764322368999999999999999
Q ss_pred HHhcCCceEEEEecCCCCccceEEeCChhHHHHHHHHHHHHhhhC
Q 040896 241 IRHMGRGYPIIVSSVPRETKALYSLRDPDEVMSFLRRLARWKKSL 285 (288)
Q Consensus 241 ~~~~~~g~~v~v~na~~~~~A~~~~~~~~~v~~~l~~~~~~~~~~ 285 (288)
++..++|+||.|+....++.|+|.+.++++|.++|+.++.|++.+
T Consensus 307 L~~~~~G~gI~Vg~~~k~T~A~y~L~dp~eV~~~L~~L~~~~~~~ 351 (354)
T PLN02151 307 LRDKKQGLGILVSKYAKETNASYSLQEPDEVMEFLERLVEWKQLR 351 (354)
T ss_pred HhhcCCCccEEeccCCCCCcceEeCCCHHHHHHHHHHHHHhhhcc
Confidence 987656899999977778999999999999999999999998764
No 4
>PRK10187 trehalose-6-phosphate phosphatase; Provisional
Probab=100.00 E-value=3.2e-37 Score=269.59 Aligned_cols=233 Identities=24% Similarity=0.433 Sum_probs=187.4
Q ss_pred CcEEEEEecCCccccCcCCCCCCCCCHHHHHHHHHHhhc--CCEEEEcCCChhhHhhhcCCCCeEEEccCceeEeCCCCC
Q 040896 20 KKIVVFLDYDGTLSPIVEDPDKAFMSDTMRMAVHEVAHF--FPTAIVSGRCLDKVSRFVQLKNVVYAGSHGMDISTPAGS 97 (288)
Q Consensus 20 ~~~li~~DlDGTL~~~~~~~~~~~i~~~~~~aL~~L~~~--~~v~i~TGR~~~~l~~~~~~~~~~~i~~nGa~i~~~~~~ 97 (288)
.+.+||+||||||++...+|++..++++++++|++|++. ..|+|+|||++..+.++++....+++|+||++++..++.
T Consensus 13 ~~~li~~D~DGTLl~~~~~p~~~~i~~~~~~~L~~L~~~~g~~v~i~SGR~~~~~~~~~~~~~~~~i~~nGa~i~~~~~~ 92 (266)
T PRK10187 13 ANYAWFFDLDGTLAEIKPHPDQVVVPDNILQGLQLLATANDGALALISGRSMVELDALAKPYRFPLAGVHGAERRDINGK 92 (266)
T ss_pred CCEEEEEecCCCCCCCCCCcccccCCHHHHHHHHHHHhCCCCcEEEEeCCCHHHHHHhcCcccceEEEeCCCeeecCCCC
Confidence 368999999999999777777889999999999999984 489999999999999998755577999999999876544
Q ss_pred cccCCCCCcccccccCCCceeccCCCccchhHHHHHHHHHHHHhhccCCeEEEecCceEEEeccCCCcccHHHHHHHHH-
Q 040896 98 LKQNNPKHETRTVDEQGNEVVHFQPAQEFLPQIQEMIQVLEEKIKTIKGATVEDNKFCISVHFRRVDEDDINTLQEMVN- 176 (288)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~l~- 176 (288)
+.. ..... .+...+.+.+.++.++.+|.++|.+..++.+||++.+.. ......+.
T Consensus 93 ~~~-------------------~~l~~---~~~~~i~~~l~~~~~~~pg~~ve~k~~~~~~h~r~~~~~--~~~~~~l~~ 148 (266)
T PRK10187 93 THI-------------------VHLPD---AIARDISVQLHTALAQLPGAELEAKGMAFALHYRQAPQH--EDALLALAQ 148 (266)
T ss_pred eee-------------------ccCCh---hHHHHHHHHHHHHhccCCCcEEEeCCcEEEEECCCCCcc--HHHHHHHHH
Confidence 210 01111 234455555655566788999999998899999876422 23333443
Q ss_pred HHHHhCCCeEEeCCceEEEEeCCCCCCHHHHHHHHHHhcCCCCCCCceeEEEcCCcccHHHHHHHHhcCCceEEEEecCC
Q 040896 177 SIVEAYPNFRISGGKKVMEIRPCIDWDKGRALEYLLDTFGFNNASDFLPLYIGDDKTDEDAFKVIRHMGRGYPIIVSSVP 256 (288)
Q Consensus 177 ~~~~~~~~~~~~~~~~~ieI~~~~~~sKg~al~~l~~~~~~~~~~~~~vv~~GDs~ND~~Ml~~~~~~~~g~~v~v~na~ 256 (288)
.+.+.++.+.+.+++.++||.|+ ++|||.||+++++++++..+ .+++|||+.||++||+++++.+ |++|+|||+
T Consensus 149 ~i~~~~~~~~~~~g~~~lEi~p~-g~~Kg~al~~ll~~~~~~~~---~v~~~GD~~nD~~mf~~~~~~~-g~~vavg~a- 222 (266)
T PRK10187 149 RITQIWPQLALQPGKCVVEIKPR-GTNKGEAIAAFMQEAPFAGR---TPVFVGDDLTDEAGFAVVNRLG-GISVKVGTG- 222 (266)
T ss_pred HHHhhCCceEEeCCCEEEEeeCC-CCCHHHHHHHHHHhcCCCCC---eEEEEcCCccHHHHHHHHHhcC-CeEEEECCC-
Confidence 34445554667889999999999 99999999999999999877 9999999999999999997654 899999988
Q ss_pred CCccceEEeCChhHHHHHHHHHHHHhh
Q 040896 257 RETKALYSLRDPDEVMSFLRRLARWKK 283 (288)
Q Consensus 257 ~~~~A~~~~~~~~~v~~~l~~~~~~~~ 283 (288)
.+.|+|+++++++|..+|+.++..++
T Consensus 223 -~~~A~~~l~~~~~v~~~L~~l~~~~~ 248 (266)
T PRK10187 223 -ATQASWRLAGVPDVWSWLEMITTAQQ 248 (266)
T ss_pred -CCcCeEeCCCHHHHHHHHHHHHHhhh
Confidence 46699999999999999999987654
No 5
>TIGR00685 T6PP trehalose-phosphatase. At least 18 distinct sequences from Arabidopsis have been identified, roughly half of these are of the fungal type, with a fused synthase and half are like the bacterial members having only the phosphatase domain. It has been suggested that trehalose is being used in Arabidopsis as a regulatory molecule in development and possibly other processes.
Probab=100.00 E-value=4.8e-34 Score=247.07 Aligned_cols=236 Identities=31% Similarity=0.434 Sum_probs=179.5
Q ss_pred CCcEEEEEecCCccccCcCCCCCCCCCHHHHHHHHHHhhcC--CEEEEcCCChhhHhhhcCCCCeEEEccCceeEeCCCC
Q 040896 19 GKKIVVFLDYDGTLSPIVEDPDKAFMSDTMRMAVHEVAHFF--PTAIVSGRCLDKVSRFVQLKNVVYAGSHGMDISTPAG 96 (288)
Q Consensus 19 ~~~~li~~DlDGTL~~~~~~~~~~~i~~~~~~aL~~L~~~~--~v~i~TGR~~~~l~~~~~~~~~~~i~~nGa~i~~~~~ 96 (288)
+++++||+||||||++...+|....++++++++|++|.+++ .|+|+|||+...+...+.+++++++|+||++++.+ +
T Consensus 1 ~~~~~l~lD~DGTL~~~~~~p~~~~~~~~~~~~L~~L~~~~~~~v~ivSGR~~~~~~~~~~~~~~~l~g~hG~~~~~~-g 79 (244)
T TIGR00685 1 ARKRAFFFDYDGTLSEIVPDPDAAVVSDRLLTILQKLAARPHNAIWIISGRKFLEKWLGVKLPGLGLAGEHGCEMKDN-G 79 (244)
T ss_pred CCcEEEEEecCccccCCcCCCcccCCCHHHHHHHHHHHhCCCCeEEEEECCChhhccccCCCCceeEEeecCEEEecC-C
Confidence 46799999999999998777777889999999999999884 67899999998888877778899999999998863 3
Q ss_pred CcccCCCCCcccccccCCCceeccCCCccchhHHHHHHHHHHHHhhccCCeEEEecCceEEEeccCC-CcccHHH-HHHH
Q 040896 97 SLKQNNPKHETRTVDEQGNEVVHFQPAQEFLPQIQEMIQVLEEKIKTIKGATVEDNKFCISVHFRRV-DEDDINT-LQEM 174 (288)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~-~~~~~~~-~~~~ 174 (288)
... .|.. +......|.+...+ +..+....+|.++|.++.+++|||+.+ +++.... ..+.
T Consensus 80 ~~~-~~~~-----------------~~~~~~~~~~~~~~-l~~~~~~~pG~~iE~K~~s~~~hyr~a~d~~~~~~~~~~~ 140 (244)
T TIGR00685 80 SCQ-DWVN-----------------LTEKIPSWKVRANE-LREEITTRPGVFIERKGVALAWHYRQAPVPELARFRAKEL 140 (244)
T ss_pred Ccc-eeee-----------------chhhhhhHHHHHHH-HHHHHhcCCCcEEEecceEEEEEeccCCCcHHHHHHHHHH
Confidence 321 1210 11100123222222 322333449999999999999999987 3332222 1222
Q ss_pred HHHHHHhCCCeEEeCCceEEEEeCCCCCCHHHHHHHHHHhcCCCCCCCceeEEEcCCcccHHHHHHHHhcC---CceEEE
Q 040896 175 VNSIVEAYPNFRISGGKKVMEIRPCIDWDKGRALEYLLDTFGFNNASDFLPLYIGDDKTDEDAFKVIRHMG---RGYPII 251 (288)
Q Consensus 175 l~~~~~~~~~~~~~~~~~~ieI~~~~~~sKg~al~~l~~~~~~~~~~~~~vv~~GDs~ND~~Ml~~~~~~~---~g~~v~ 251 (288)
+.++.... ++.+..++.++|+.|+ ++|||.+++++++.+++..+ .+++|||+.||++||+.++.+. .+++|.
T Consensus 141 ~~~~~~~~-~~~v~~g~~~~e~~p~-~~~Kg~a~~~~~~~~~~~~~---~~i~iGD~~~D~~~~~~~~~~~~~~g~~~v~ 215 (244)
T TIGR00685 141 KEKILSFT-DLEVMDGKAVVELKPR-FVNKGEIVKRLLWHQPGSGI---SPVYLGDDITDEDAFRVVNNQWGNYGFYPVP 215 (244)
T ss_pred HHHHhcCC-CEEEEECCeEEEEeeC-CCCHHHHHHHHHHhcccCCC---ceEEEcCCCcHHHHHHHHhcccCCCCeEEEE
Confidence 33333322 5788889999999999 99999999999999998776 9999999999999999994321 268999
Q ss_pred EecCCCCccceEEeCChhHHHHHHHHHH
Q 040896 252 VSSVPRETKALYSLRDPDEVMSFLRRLA 279 (288)
Q Consensus 252 v~na~~~~~A~~~~~~~~~v~~~l~~~~ 279 (288)
|+.+..++.|+|+++++++|..+|+.++
T Consensus 216 v~~g~~~~~A~~~~~~~~~v~~~L~~l~ 243 (244)
T TIGR00685 216 IGSGSKKTVAKFHLTGPQQVLEFLGLLV 243 (244)
T ss_pred EecCCcCCCceEeCCCHHHHHHHHHHHh
Confidence 9766667899999999999999998875
No 6
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=100.00 E-value=1.3e-33 Score=278.23 Aligned_cols=241 Identities=29% Similarity=0.423 Sum_probs=192.4
Q ss_pred hhHHHHHHhh-cCCcEEEEEecCCccccCcCCCCCCCCCHHHHHHHHHHhhc--CCEEEEcCCChhhHhhhcCCCCeEEE
Q 040896 8 DTFDRMVAAA-KGKKIVVFLDYDGTLSPIVEDPDKAFMSDTMRMAVHEVAHF--FPTAIVSGRCLDKVSRFVQLKNVVYA 84 (288)
Q Consensus 8 ~~~~~~~~~~-~~~~~li~~DlDGTL~~~~~~~~~~~i~~~~~~aL~~L~~~--~~v~i~TGR~~~~l~~~~~~~~~~~i 84 (288)
++++.+..++ .+++++|+||+||||++....+....++++++++|++|+++ ..|+|+|||++..+.++++..++++|
T Consensus 478 ~~~~~~~~~y~~~~~rLi~~D~DGTL~~~~~~~~~~~~~~~~~~~L~~L~~d~g~~V~ivSGR~~~~l~~~~~~~~l~li 557 (726)
T PRK14501 478 AAAEEIIARYRAASRRLLLLDYDGTLVPFAPDPELAVPDKELRDLLRRLAADPNTDVAIISGRDRDTLERWFGDLPIHLV 557 (726)
T ss_pred cCHHHHHHHHHhccceEEEEecCccccCCCCCcccCCCCHHHHHHHHHHHcCCCCeEEEEeCCCHHHHHHHhCCCCeEEE
Confidence 4688999997 57889999999999998765556678899999999999995 48999999999999999875568899
Q ss_pred ccCceeEeCCCCCcccCCCCCcccccccCCCceeccCCCccchhHHHHHHHHHHHHhhccCCeEEEecCceEEEeccCCC
Q 040896 85 GSHGMDISTPAGSLKQNNPKHETRTVDEQGNEVVHFQPAQEFLPQIQEMIQVLEEKIKTIKGATVEDNKFCISVHFRRVD 164 (288)
Q Consensus 85 ~~nGa~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~ 164 (288)
++||++++.+++.+.. . .... ..|.+.+.+.+..+.+..+|.+++.+..+++|+|++.+
T Consensus 558 aenG~~i~~~~~~w~~----~--------------~~~~---~~w~~~v~~il~~~~~~~~gs~ie~k~~~l~~~~r~~d 616 (726)
T PRK14501 558 AEHGAWSRAPGGEWQL----L--------------EPVA---TEWKDAVRPILEEFVDRTPGSFIEEKEASLAWHYRNAD 616 (726)
T ss_pred EeCCEEEeCCCCceEE----C--------------CCcc---hhHHHHHHHHHHHHHhcCCCcEEEEcceEEEEEccCCC
Confidence 9999999876554220 0 0111 24666677777777778899999999999999999877
Q ss_pred cccHHH----HHHHHHHHHHhCCCeEEeCCceEEEEeCCCCCCHHHHHHHHHHhcCCCCCCCceeEEEcCCcccHHHHHH
Q 040896 165 EDDINT----LQEMVNSIVEAYPNFRISGGKKVMEIRPCIDWDKGRALEYLLDTFGFNNASDFLPLYIGDDKTDEDAFKV 240 (288)
Q Consensus 165 ~~~~~~----~~~~l~~~~~~~~~~~~~~~~~~ieI~~~~~~sKg~al~~l~~~~~~~~~~~~~vv~~GDs~ND~~Ml~~ 240 (288)
++.... +.+.++..+... .+.+.+|+.++||.|+ ++|||.|++++++ +++.+ .+++|||+.||++||+.
T Consensus 617 ~~~~~~~a~~l~~~l~~~~~~~-~~~v~~g~~~veV~p~-~vnKG~al~~ll~--~~~~d---~vl~~GD~~nDe~Mf~~ 689 (726)
T PRK14501 617 PELGEARANELILALSSLLSNA-PLEVLRGNKVVEVRPA-GVNKGRAVRRLLE--AGPYD---FVLAIGDDTTDEDMFRA 689 (726)
T ss_pred HHHHHHHHHHHHHHHHHHhcCC-CeEEEECCeEEEEEEC-CCCHHHHHHHHHh--cCCCC---EEEEECCCCChHHHHHh
Confidence 554332 233333333332 4777789999999999 9999999999999 45555 99999999999999999
Q ss_pred HHhcCCceEEEEecCCCCccceEEeCChhHHHHHHHHHHH
Q 040896 241 IRHMGRGYPIIVSSVPRETKALYSLRDPDEVMSFLRRLAR 280 (288)
Q Consensus 241 ~~~~~~g~~v~v~na~~~~~A~~~~~~~~~v~~~l~~~~~ 280 (288)
++. .|++|+|||+ ++.|+|+++++++|..+|+.++.
T Consensus 690 ~~~--~~~~v~vG~~--~s~A~~~l~~~~eV~~~L~~l~~ 725 (726)
T PRK14501 690 LPE--TAITVKVGPG--ESRARYRLPSQREVRELLRRLLD 725 (726)
T ss_pred ccc--CceEEEECCC--CCcceEeCCCHHHHHHHHHHHhc
Confidence 842 2689999874 68999999999999999998864
No 7
>COG0561 Cof Predicted hydrolases of the HAD superfamily [General function prediction only]
Probab=100.00 E-value=3.7e-34 Score=250.69 Aligned_cols=223 Identities=21% Similarity=0.268 Sum_probs=150.0
Q ss_pred CcEEEEEecCCccccCcCCCCCCCCCHHHHHHHHHHhhcC-CEEEEcCCChhhHhhhc---CCCCeEEEccCceeEeCCC
Q 040896 20 KKIVVFLDYDGTLSPIVEDPDKAFMSDTMRMAVHEVAHFF-PTAIVSGRCLDKVSRFV---QLKNVVYAGSHGMDISTPA 95 (288)
Q Consensus 20 ~~~li~~DlDGTL~~~~~~~~~~~i~~~~~~aL~~L~~~~-~v~i~TGR~~~~l~~~~---~~~~~~~i~~nGa~i~~~~ 95 (288)
..|+|++||||||++ +++.++++++++|+++++++ .|+|||||++..+.+++ ++. .++||+||++|+.+
T Consensus 2 ~~kli~~DlDGTLl~-----~~~~i~~~~~~al~~~~~~g~~v~iaTGR~~~~~~~~~~~l~~~-~~~I~~NGa~i~~~- 74 (264)
T COG0561 2 MIKLLAFDLDGTLLD-----SNKTISPETKEALARLREKGVKVVLATGRPLPDVLSILEELGLD-GPLITFNGALIYNG- 74 (264)
T ss_pred CeeEEEEcCCCCccC-----CCCccCHHHHHHHHHHHHCCCEEEEECCCChHHHHHHHHHcCCC-ccEEEeCCeEEecC-
Confidence 368999999999999 56679999999999999995 99999999999999876 443 37999999999998
Q ss_pred CCcccCCCCCcccccccCCCceeccCCCccchhHHHHHHHHHHHHhhccCCeEEEecCc-----------------eEEE
Q 040896 96 GSLKQNNPKHETRTVDEQGNEVVHFQPAQEFLPQIQEMIQVLEEKIKTIKGATVEDNKF-----------------CISV 158 (288)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~-----------------~~~~ 158 (288)
++.... ..... .....+...+.... ............ ...+
T Consensus 75 ~~~i~~------------------~~l~~---~~~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (264)
T COG0561 75 GELLFQ------------------KPLSR---EDVEELLELLEDFQ-GIALVLYTDDGIYLTKKRGTFAEARIGFANLSP 132 (264)
T ss_pred CcEEee------------------ecCCH---HHHHHHHHHHHhcc-CceEEEEeccceeeccCCCcccccccccccccc
Confidence 432210 01111 22333333332210 000000000000 0000
Q ss_pred ecc---CCCc------ccHHHHHHHHHHHH-HhCC--CeEEeCC-ceEEEEeCCCCCCHHHHHHHHHHhcCCCCCCCcee
Q 040896 159 HFR---RVDE------DDINTLQEMVNSIV-EAYP--NFRISGG-KKVMEIRPCIDWDKGRALEYLLDTFGFNNASDFLP 225 (288)
Q Consensus 159 ~~~---~~~~------~~~~~~~~~l~~~~-~~~~--~~~~~~~-~~~ieI~~~~~~sKg~al~~l~~~~~~~~~~~~~v 225 (288)
... .... .........+.+.+ +.++ .+.+.++ ..++||+|+ |+|||.||++|++++|++.+ +|
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~s~~~~lei~~~-g~~K~~al~~l~~~lgi~~~---~v 208 (264)
T COG0561 133 VGREAAELEDNKIIALDKDHEILEELVEALRKRFPDLGLTVSSSGPISLDITPK-GVSKGYALQRLAKLLGIKLE---EV 208 (264)
T ss_pred cccchhhcCcceEEEEecChHhHHHHHHHHhhhccccceEEEEcCCceEEEecC-CCchHHHHHHHHHHhCCCHH---He
Confidence 000 0000 00012223333322 3343 2445555 445999999 99999999999999999977 99
Q ss_pred EEEcCCcccHHHHHHHHhcCCceEEEEecCCC--CccceEEeC--ChhHHHHHHHHHHH
Q 040896 226 LYIGDDKTDEDAFKVIRHMGRGYPIIVSSVPR--ETKALYSLR--DPDEVMSFLRRLAR 280 (288)
Q Consensus 226 v~~GDs~ND~~Ml~~~~~~~~g~~v~v~na~~--~~~A~~~~~--~~~~v~~~l~~~~~ 280 (288)
++||||.||++||+++ |+||+|+||.+ +..|++++. +.+||+++|++++.
T Consensus 209 ~afGD~~ND~~Ml~~a-----g~gvam~Na~~~~k~~A~~vt~~n~~~Gv~~~l~~~~~ 262 (264)
T COG0561 209 IAFGDSTNDIEMLEVA-----GLGVAMGNADEELKELADYVTTSNDEDGVAEALEKLLL 262 (264)
T ss_pred EEeCCccccHHHHHhc-----CeeeeccCCCHHHHhhCCcccCCccchHHHHHHHHHhc
Confidence 9999999999999999 99999999965 468887765 47899999998864
No 8
>PRK10976 putative hydrolase; Provisional
Probab=100.00 E-value=4.7e-34 Score=250.22 Aligned_cols=239 Identities=15% Similarity=0.163 Sum_probs=147.2
Q ss_pred cEEEEEecCCccccCcCCCCCCCCCHHHHHHHHHHhhcC-CEEEEcCCChhhHhhhcC-CC-CeEEEccCceeEeCCCCC
Q 040896 21 KIVVFLDYDGTLSPIVEDPDKAFMSDTMRMAVHEVAHFF-PTAIVSGRCLDKVSRFVQ-LK-NVVYAGSHGMDISTPAGS 97 (288)
Q Consensus 21 ~~li~~DlDGTL~~~~~~~~~~~i~~~~~~aL~~L~~~~-~v~i~TGR~~~~l~~~~~-~~-~~~~i~~nGa~i~~~~~~ 97 (288)
.|+|++||||||++ +++.+++.++++|++|++++ +|+|||||++..+.+++. +. ..++||+||+.|+..++.
T Consensus 2 ikli~~DlDGTLl~-----~~~~is~~~~~ai~~l~~~G~~~~iaTGR~~~~~~~~~~~l~~~~~~I~~NGa~i~~~~~~ 76 (266)
T PRK10976 2 YQVVASDLDGTLLS-----PDHTLSPYAKETLKLLTARGIHFVFATGRHHVDVGQIRDNLEIKSYMITSNGARVHDTDGN 76 (266)
T ss_pred ceEEEEeCCCCCcC-----CCCcCCHHHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHhcCCCCeEEEcCCcEEECCCCC
Confidence 48999999999998 45689999999999999995 999999999999888652 21 357899999999975443
Q ss_pred cccC--CCCC-cccccccC----CCceeccCCCccchh-HHHHHHHHHHHHhhccCCe---EEEec-CceEEEeccCCCc
Q 040896 98 LKQN--NPKH-ETRTVDEQ----GNEVVHFQPAQEFLP-QIQEMIQVLEEKIKTIKGA---TVEDN-KFCISVHFRRVDE 165 (288)
Q Consensus 98 ~~~~--~~~~-~~~~~~~~----~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~---~~e~~-~~~~~~~~~~~~~ 165 (288)
.... .... ..+.+... ......+.....+.. ................... ..... ...+.+... +.
T Consensus 77 ~i~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ki~~~~~--~~ 154 (266)
T PRK10976 77 LIFSHNLDRDIASDLFGVVHDNPDIITNVYRDDEWFMNRHRPEEMRFFKEAVFKYQLYEPGLLEPDGVSKVFFTCD--SH 154 (266)
T ss_pred EehhhcCCHHHHHHHHHhhcccCCEEEEEEcCCeEEEcCCChHHHHHHHhcCCcceeechhhcccCCceEEEEEcC--CH
Confidence 2210 0000 00000000 000000000000000 0000000010000000000 00000 011111111 11
Q ss_pred ccHHHHHHHHHHHH-HhCC-CeEE-eCCceEEEEeCCCCCCHHHHHHHHHHhcCCCCCCCceeEEEcCCcccHHHHHHHH
Q 040896 166 DDINTLQEMVNSIV-EAYP-NFRI-SGGKKVMEIRPCIDWDKGRALEYLLDTFGFNNASDFLPLYIGDDKTDEDAFKVIR 242 (288)
Q Consensus 166 ~~~~~~~~~l~~~~-~~~~-~~~~-~~~~~~ieI~~~~~~sKg~al~~l~~~~~~~~~~~~~vv~~GDs~ND~~Ml~~~~ 242 (288)
...+.+.+.+ +.+. .+.+ .++..++||+|+ ++|||+||++|++++|++.+ ++++|||+.||++||+.+
T Consensus 155 ----~~~~~~~~~l~~~~~~~~~~~~s~~~~~eI~~~-gvsKg~al~~l~~~lgi~~~---~viafGD~~NDi~Ml~~a- 225 (266)
T PRK10976 155 ----EKLLPLEQAINARWGDRVNVSFSTLTCLEVMAG-GVSKGHALEAVAKKLGYSLK---DCIAFGDGMNDAEMLSMA- 225 (266)
T ss_pred ----HHHHHHHHHHHHHhCCcEEEEEeCCceEEEEcC-CCChHHHHHHHHHHcCCCHH---HeEEEcCCcccHHHHHHc-
Confidence 1122233322 2332 3554 456789999999 99999999999999999988 999999999999999999
Q ss_pred hcCCceEEEEecCCCC--ccce--EEeC--ChhHHHHHHHHHH
Q 040896 243 HMGRGYPIIVSSVPRE--TKAL--YSLR--DPDEVMSFLRRLA 279 (288)
Q Consensus 243 ~~~~g~~v~v~na~~~--~~A~--~~~~--~~~~v~~~l~~~~ 279 (288)
|+||||+||.++ .+|+ +++. +.+||+++|++++
T Consensus 226 ----g~~vAm~NA~~~vK~~A~~~~v~~~n~edGVa~~l~~~~ 264 (266)
T PRK10976 226 ----GKGCIMGNAHQRLKDLLPELEVIGSNADDAVPHYLRKLY 264 (266)
T ss_pred ----CCCeeecCCcHHHHHhCCCCeecccCchHHHHHHHHHHh
Confidence 899999999874 5766 6765 5789999999886
No 9
>PRK03669 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=100.00 E-value=1.6e-33 Score=247.57 Aligned_cols=228 Identities=15% Similarity=0.249 Sum_probs=149.5
Q ss_pred CCcEEEEEecCCccccCcCCCCCCCCCHHHHHHHHHHhhcC-CEEEEcCCChhhHhhhc---CCCCeEEEccCceeEeCC
Q 040896 19 GKKIVVFLDYDGTLSPIVEDPDKAFMSDTMRMAVHEVAHFF-PTAIVSGRCLDKVSRFV---QLKNVVYAGSHGMDISTP 94 (288)
Q Consensus 19 ~~~~li~~DlDGTL~~~~~~~~~~~i~~~~~~aL~~L~~~~-~v~i~TGR~~~~l~~~~---~~~~~~~i~~nGa~i~~~ 94 (288)
+.+++||+||||||++ +++.+++.++++|++|++++ +|+|||||++..+.+++ +++..++||+||+.|+.+
T Consensus 5 ~~~~lI~~DlDGTLL~-----~~~~i~~~~~~ai~~l~~~Gi~~viaTGR~~~~i~~~~~~l~~~~~~~I~~NGa~I~~~ 79 (271)
T PRK03669 5 QDPLLIFTDLDGTLLD-----SHTYDWQPAAPWLTRLREAQVPVILCSSKTAAEMLPLQQTLGLQGLPLIAENGAVIQLD 79 (271)
T ss_pred CCCeEEEEeCccCCcC-----CCCcCcHHHHHHHHHHHHcCCeEEEEcCCCHHHHHHHHHHhCCCCCcEEEeCCCEEEec
Confidence 5689999999999998 45678999999999999995 99999999999998874 454457999999999975
Q ss_pred CCCc-ccCCCCCcccccccCCCceeccCCCccchhHHHHHHHHHHHHhh---------------ccCCeE-----E-Eec
Q 040896 95 AGSL-KQNNPKHETRTVDEQGNEVVHFQPAQEFLPQIQEMIQVLEEKIK---------------TIKGAT-----V-EDN 152 (288)
Q Consensus 95 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~-----~-e~~ 152 (288)
.+.. ...+. ... ..... ..+..+.+.+..... ...+.. . ...
T Consensus 80 ~~~~~~~~~~-~~~------------~~l~~---~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (271)
T PRK03669 80 EQWQDHPDFP-RII------------SGISH---GEIRQVLNTLREKEGFKFTTFDDVDDATIAEWTGLSRSQAALARLH 143 (271)
T ss_pred CcccCCCCce-Eee------------cCCCH---HHHHHHHHHHHHhcCCceeecccCCHHHHHHHhCCCHHHHHHHhcc
Confidence 3311 00000 000 00000 011111111111000 000000 0 000
Q ss_pred CceEEEeccCCCcccHHHHHHHHHHHHHhCCCeEEeCCceEEEEeCCCCCCHHHHHHHHHHhcCC---CCCCCceeEEEc
Q 040896 153 KFCISVHFRRVDEDDINTLQEMVNSIVEAYPNFRISGGKKVMEIRPCIDWDKGRALEYLLDTFGF---NNASDFLPLYIG 229 (288)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ieI~~~~~~sKg~al~~l~~~~~~---~~~~~~~vv~~G 229 (288)
.....+.+.. + ......+.+.+... ++.+.++..++||+|+ ++|||.|+++|++++|+ +.+ ++++||
T Consensus 144 ~~~~~~~~~~-~----~~~~~~~~~~l~~~-~~~~~~~~~~iEi~~~-g~sKg~al~~l~~~lgi~~~~~~---~viafG 213 (271)
T PRK03669 144 EASVTLIWRD-S----DERMAQFTARLAEL-GLQFVQGARFWHVLDA-SAGKDQAANWLIATYQQLSGTRP---TTLGLG 213 (271)
T ss_pred ccCceeEecC-C----HHHHHHHHHHHHHC-CCEEEecCeeEEEecC-CCCHHHHHHHHHHHHHhhcCCCc---eEEEEc
Confidence 0001111111 1 12223333333332 4665555579999999 99999999999999999 877 999999
Q ss_pred CCcccHHHHHHHHhcCCceEEEEecCCC-C-------ccceEEeC--ChhHHHHHHHHHHHHh
Q 040896 230 DDKTDEDAFKVIRHMGRGYPIIVSSVPR-E-------TKALYSLR--DPDEVMSFLRRLARWK 282 (288)
Q Consensus 230 Ds~ND~~Ml~~~~~~~~g~~v~v~na~~-~-------~~A~~~~~--~~~~v~~~l~~~~~~~ 282 (288)
||.||++||+++ |+||+|+|+.. . ..|+|++. +.+|+.+.|+++++.|
T Consensus 214 Ds~NDi~Ml~~a-----g~gvAM~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~ 271 (271)
T PRK03669 214 DGPNDAPLLDVM-----DYAVVVKGLNREGVHLQDDDPARVYRTQREGPEGWREGLDHFFSAR 271 (271)
T ss_pred CCHHHHHHHHhC-----CEEEEecCCCCCCcccccccCCceEeccCCCcHHHHHHHHHHHhcC
Confidence 999999999999 89999998762 1 26888887 4779999999998764
No 10
>PRK10513 sugar phosphate phosphatase; Provisional
Probab=100.00 E-value=1.1e-33 Score=248.38 Aligned_cols=217 Identities=14% Similarity=0.180 Sum_probs=146.1
Q ss_pred cEEEEEecCCccccCcCCCCCCCCCHHHHHHHHHHhhcC-CEEEEcCCChhhHhhhc---CCC--CeEEEccCceeEeCC
Q 040896 21 KIVVFLDYDGTLSPIVEDPDKAFMSDTMRMAVHEVAHFF-PTAIVSGRCLDKVSRFV---QLK--NVVYAGSHGMDISTP 94 (288)
Q Consensus 21 ~~li~~DlDGTL~~~~~~~~~~~i~~~~~~aL~~L~~~~-~v~i~TGR~~~~l~~~~---~~~--~~~~i~~nGa~i~~~ 94 (288)
.|+|++||||||++ +++.++++++++|++|++++ .|+|||||++..+.+++ ++. ..++||+||+.|+..
T Consensus 3 ~kli~~DlDGTLl~-----~~~~i~~~~~~ai~~l~~~G~~~~iaTGR~~~~~~~~~~~l~~~~~~~~~I~~NGa~i~~~ 77 (270)
T PRK10513 3 IKLIAIDMDGTLLL-----PDHTISPAVKQAIAAARAKGVNVVLTTGRPYAGVHRYLKELHMEQPGDYCITNNGALVQKA 77 (270)
T ss_pred eEEEEEecCCcCcC-----CCCccCHHHHHHHHHHHHCCCEEEEecCCChHHHHHHHHHhCCCCCCCeEEEcCCeEEEEC
Confidence 68999999999998 46789999999999999995 99999999999988765 442 247999999999863
Q ss_pred -CCCcccCCCCCcccccccCCCceeccCCCccchhHHHHHHHHHHH----------------------------HhhccC
Q 040896 95 -AGSLKQNNPKHETRTVDEQGNEVVHFQPAQEFLPQIQEMIQVLEE----------------------------KIKTIK 145 (288)
Q Consensus 95 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------~~~~~~ 145 (288)
++..... .. ... .....+.+.+.. +....+
T Consensus 78 ~~~~~i~~--~~----------------l~~---~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (270)
T PRK10513 78 ADGETVAQ--TA----------------LSY---DDYLYLEKLSREVGVHFHALDRNTLYTANRDISYYTVHESFLTGIP 136 (270)
T ss_pred CCCCEEEe--cC----------------CCH---HHHHHHHHHHHHcCCcEEEEECCEEEEecCCcchhHHHhhhhccCC
Confidence 3332210 00 000 001111111110 000000
Q ss_pred CeE-----EEe--cCceEEEeccCCCcccHHHHHHHHHH-HHHhC-CCeEE-eCCceEEEEeCCCCCCHHHHHHHHHHhc
Q 040896 146 GAT-----VED--NKFCISVHFRRVDEDDINTLQEMVNS-IVEAY-PNFRI-SGGKKVMEIRPCIDWDKGRALEYLLDTF 215 (288)
Q Consensus 146 ~~~-----~e~--~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~-~~~~~-~~~~~~ieI~~~~~~sKg~al~~l~~~~ 215 (288)
... +.. ....+.+ +. ++ ...+.+.+ +.+.+ ..+.+ .++..++||+|+ |+|||+||++|++++
T Consensus 137 ~~~~~~~~~~~~~~~~k~~~-~~--~~----~~~~~~~~~~~~~~~~~~~~~~s~~~~~eI~~~-gvsKg~al~~l~~~~ 208 (270)
T PRK10513 137 LVFREVEKMDPNLQFPKVMM-ID--EP----EILDAAIARIPAEVKERYTVLKSAPYFLEILDK-RVNKGTGVKSLAEHL 208 (270)
T ss_pred ccccchhhccccCCceEEEE-eC--CH----HHHHHHHHHhHHHhcCcEEEEEecCeeEEEeCC-CCChHHHHHHHHHHh
Confidence 000 000 0001111 10 11 11122222 22222 23544 466789999999 999999999999999
Q ss_pred CCCCCCCceeEEEcCCcccHHHHHHHHhcCCceEEEEecCCC--CccceEEeC--ChhHHHHHHHHHH
Q 040896 216 GFNNASDFLPLYIGDDKTDEDAFKVIRHMGRGYPIIVSSVPR--ETKALYSLR--DPDEVMSFLRRLA 279 (288)
Q Consensus 216 ~~~~~~~~~vv~~GDs~ND~~Ml~~~~~~~~g~~v~v~na~~--~~~A~~~~~--~~~~v~~~l~~~~ 279 (288)
|++.+ ++++|||+.||++||+.+ |+||+|+||.+ +.+|++++. +.+||+++|++++
T Consensus 209 gi~~~---~v~afGD~~NDi~Ml~~a-----g~~vAm~NA~~~vK~~A~~vt~~n~~dGva~~i~~~~ 268 (270)
T PRK10513 209 GIKPE---EVMAIGDQENDIAMIEYA-----GVGVAMGNAIPSVKEVAQFVTKSNLEDGVAFAIEKYV 268 (270)
T ss_pred CCCHH---HEEEECCchhhHHHHHhC-----CceEEecCccHHHHHhcCeeccCCCcchHHHHHHHHh
Confidence 99988 999999999999999999 89999999987 478999986 4779999999876
No 11
>PRK15126 thiamin pyrimidine pyrophosphate hydrolase; Provisional
Probab=100.00 E-value=1.2e-33 Score=248.58 Aligned_cols=235 Identities=14% Similarity=0.188 Sum_probs=146.6
Q ss_pred cEEEEEecCCccccCcCCCCCCCCCHHHHHHHHHHhhcC-CEEEEcCCChhhHhhhc---CCCCeEEEccCceeEeCCCC
Q 040896 21 KIVVFLDYDGTLSPIVEDPDKAFMSDTMRMAVHEVAHFF-PTAIVSGRCLDKVSRFV---QLKNVVYAGSHGMDISTPAG 96 (288)
Q Consensus 21 ~~li~~DlDGTL~~~~~~~~~~~i~~~~~~aL~~L~~~~-~v~i~TGR~~~~l~~~~---~~~~~~~i~~nGa~i~~~~~ 96 (288)
.|+|++||||||++ +++.++++++++|++|++++ .|++||||++..+.+++ ++. .++||+||+.|+..++
T Consensus 2 ~kli~~DlDGTLl~-----~~~~i~~~~~~ai~~l~~~G~~~~iaTGR~~~~~~~~~~~l~~~-~~~I~~NGa~I~~~~~ 75 (272)
T PRK15126 2 ARLAAFDMDGTLLM-----PDHHLGEKTLSTLARLRERDITLTFATGRHVLEMQHILGALSLD-AYLITGNGTRVHSLEG 75 (272)
T ss_pred ccEEEEeCCCcCcC-----CCCcCCHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHcCCC-CcEEecCCcEEEcCCC
Confidence 47999999999998 46689999999999999995 89999999999988875 343 4689999999996444
Q ss_pred CcccCC-CC--Ccccccc---cCCCceeccCCCccch-hHHHHHHHHHHHHhhccCCeEE-----E-ecCceEEEeccCC
Q 040896 97 SLKQNN-PK--HETRTVD---EQGNEVVHFQPAQEFL-PQIQEMIQVLEEKIKTIKGATV-----E-DNKFCISVHFRRV 163 (288)
Q Consensus 97 ~~~~~~-~~--~~~~~~~---~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-----e-~~~~~~~~~~~~~ 163 (288)
...... -. ...+.++ ..+.....+.....+. ........... . ...+.... . .....+.+ +.
T Consensus 76 ~~l~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~ki~~-~~-- 150 (272)
T PRK15126 76 ELLHRQDLPADVAELVLHQQWDTRASMHVFNDDGWFTGKEIPALLQAHV-Y-SGFRYQLIDLKRLPAHGVTKICF-CG-- 150 (272)
T ss_pred CEEEeecCCHHHHHHHHHHhhhcCcEEEEEcCCeEEecCCcHHHHHHHH-h-cCCceEEecHHHccccCceEEEE-EC--
Confidence 322100 00 0000000 0000000000000000 00000000000 0 00000000 0 00011111 11
Q ss_pred CcccHHHHHHHHHHHHH-hCC-CeEE-eCCceEEEEeCCCCCCHHHHHHHHHHhcCCCCCCCceeEEEcCCcccHHHHHH
Q 040896 164 DEDDINTLQEMVNSIVE-AYP-NFRI-SGGKKVMEIRPCIDWDKGRALEYLLDTFGFNNASDFLPLYIGDDKTDEDAFKV 240 (288)
Q Consensus 164 ~~~~~~~~~~~l~~~~~-~~~-~~~~-~~~~~~ieI~~~~~~sKg~al~~l~~~~~~~~~~~~~vv~~GDs~ND~~Ml~~ 240 (288)
++ ...+.+.+.++ .++ .+.+ .++..++||+|+ ++|||+||++|++++|++.+ ++++|||+.||++||+.
T Consensus 151 ~~----~~~~~~~~~l~~~~~~~~~~~~s~~~~~eI~~~-g~sKg~al~~l~~~~gi~~~---~v~afGD~~NDi~Ml~~ 222 (272)
T PRK15126 151 DH----DDLTRLQIQLNEALGERAHLCFSATDCLEVLPV-GCNKGAALAVLSQHLGLSLA---DCMAFGDAMNDREMLGS 222 (272)
T ss_pred CH----HHHHHHHHHHHHHhcCCEEEEEcCCcEEEeecC-CCChHHHHHHHHHHhCCCHH---HeEEecCCHHHHHHHHH
Confidence 11 12223333332 232 3554 456689999999 99999999999999999987 99999999999999999
Q ss_pred HHhcCCceEEEEecCCCC--ccceE--EeC--ChhHHHHHHHHHH
Q 040896 241 IRHMGRGYPIIVSSVPRE--TKALY--SLR--DPDEVMSFLRRLA 279 (288)
Q Consensus 241 ~~~~~~g~~v~v~na~~~--~~A~~--~~~--~~~~v~~~l~~~~ 279 (288)
+ |+||+|+||.++ .+|++ ++. +.+||+++|++++
T Consensus 223 a-----g~~vAm~Na~~~vK~~A~~~~v~~~n~edGva~~l~~~~ 262 (272)
T PRK15126 223 V-----GRGFIMGNAMPQLRAELPHLPVIGHCRNQAVSHYLTHWL 262 (272)
T ss_pred c-----CCceeccCChHHHHHhCCCCeecCCCcchHHHHHHHHHh
Confidence 9 899999999774 56775 654 5789999999987
No 12
>COG1877 OtsB Trehalose-6-phosphatase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.4e-32 Score=235.00 Aligned_cols=247 Identities=27% Similarity=0.459 Sum_probs=199.8
Q ss_pred hHHHHHHhh-cCCcEEEEEecCCccccCcCCCCCCCCCHHHHHHHHHHhhcC--CEEEEcCCChhhHhhhcCCCCeEEEc
Q 040896 9 TFDRMVAAA-KGKKIVVFLDYDGTLSPIVEDPDKAFMSDTMRMAVHEVAHFF--PTAIVSGRCLDKVSRFVQLKNVVYAG 85 (288)
Q Consensus 9 ~~~~~~~~~-~~~~~li~~DlDGTL~~~~~~~~~~~i~~~~~~aL~~L~~~~--~v~i~TGR~~~~l~~~~~~~~~~~i~ 85 (288)
.+..+..-+ +.+++++|+|+||||+.+..+|....++++++++|++|.++. .++|+|||+...+..++++++++++|
T Consensus 5 ~~~~~~~~~~~a~~~~~~lDyDGTl~~i~~~p~~a~~~~~l~~lL~~Las~~~~~v~iiSGR~~~~l~~~~~v~~i~l~a 84 (266)
T COG1877 5 QSNQLLEPYLNARKRLLFLDYDGTLTEIVPHPEAAVPDDRLLSLLQDLASDPRNVVAIISGRSLAELERLFGVPGIGLIA 84 (266)
T ss_pred hhhhhccccccccceEEEEeccccccccccCccccCCCHHHHHHHHHHHhcCCCeEEEEeCCCHHHHHHhcCCCCccEEE
Confidence 345555554 778999999999999999999999999999999999999995 49999999999999999999999999
Q ss_pred cCceeEeCCCCCcccCCCCCcccccccCCCceeccCCCccchhHHHHHHHHHHHHhhccCCeEEEecCceEEEeccCCCc
Q 040896 86 SHGMDISTPAGSLKQNNPKHETRTVDEQGNEVVHFQPAQEFLPQIQEMIQVLEEKIKTIKGATVEDNKFCISVHFRRVDE 165 (288)
Q Consensus 86 ~nGa~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~ 165 (288)
+||+++..+++.+.. ......+..|++++.+.++.+++++||+++|.+++.+.|||+++++
T Consensus 85 ehGa~~r~~~g~~~~-------------------~~~~~~~~~~~~~v~~~l~~~v~r~pGs~iE~K~~a~~~Hyr~a~~ 145 (266)
T COG1877 85 EHGAEVRDPNGKWWI-------------------NLAEEADLRWLKEVAAILEYYVERTPGSYIERKGFAVALHYRNAED 145 (266)
T ss_pred ecceEEecCCCCeeE-------------------ecCHHHHhhHHHHHHHHHHHHhhcCCCeEEEEcCcEEEEeeccCCc
Confidence 999999877776421 1122334568889999999999999999999999999999999876
Q ss_pred ccHHHHHHHHHHHHHhCCC-eEEeCCceEEEEeCCCCCCHHHHHHHHHHhcCCCCCCCceeEEEcCCcccHHHHHHHHhc
Q 040896 166 DDINTLQEMVNSIVEAYPN-FRISGGKKVMEIRPCIDWDKGRALEYLLDTFGFNNASDFLPLYIGDDKTDEDAFKVIRHM 244 (288)
Q Consensus 166 ~~~~~~~~~l~~~~~~~~~-~~~~~~~~~ieI~~~~~~sKg~al~~l~~~~~~~~~~~~~vv~~GDs~ND~~Ml~~~~~~ 244 (288)
+......... ........ +.++.|+..+|+.|. ++|||.+++++++..+.... .+++.||+..|+.||++++.+
T Consensus 146 ~~~~~~a~~~-~~~~~~~~~~~v~~gk~vVEvrp~-~~~KG~a~~~i~~~~~~~~~---~~~~aGDD~TDE~~F~~v~~~ 220 (266)
T COG1877 146 DEGAALALAE-AATLINELKLRVTPGKMVVELRPP-GVSKGAAIKYIMDELPFDGR---FPIFAGDDLTDEDAFAAVNKL 220 (266)
T ss_pred hhhHHHHHHH-HHhccccccEEEEeCceEEEEeeC-CcchHHHHHHHHhcCCCCCC---cceecCCCCccHHHHHhhccC
Confidence 5322111111 11222233 788999999999999 99999999999999988765 899999999999999999876
Q ss_pred CCceEEEEecCCCCccceEEeCChhHHHHHHHHHHHHh
Q 040896 245 GRGYPIIVSSVPRETKALYSLRDPDEVMSFLRRLARWK 282 (288)
Q Consensus 245 ~~g~~v~v~na~~~~~A~~~~~~~~~v~~~l~~~~~~~ 282 (288)
+ +++|.++-+ .+.|++.+....+..+++.++....
T Consensus 221 ~-~~~v~v~~~--~t~a~~~~~~~~~~~~~l~~~~~~~ 255 (266)
T COG1877 221 D-SITVKVGVG--STQAKFRLAGVYGFLRSLYKLLEAL 255 (266)
T ss_pred C-CceEEecCC--cccccccccccHHHHHHHHHHHHHh
Confidence 5 677777644 6777777777777777777665443
No 13
>PLN02205 alpha,alpha-trehalose-phosphate synthase [UDP-forming]
Probab=100.00 E-value=2.1e-32 Score=270.23 Aligned_cols=247 Identities=24% Similarity=0.329 Sum_probs=193.4
Q ss_pred hhHHHHHHhh-cCCcEEEEEecCCccccCcCCCCCCCCCHHHHHHHHHHhhc--CCEEEEcCCChhhHhhhcC-CCCeEE
Q 040896 8 DTFDRMVAAA-KGKKIVVFLDYDGTLSPIVEDPDKAFMSDTMRMAVHEVAHF--FPTAIVSGRCLDKVSRFVQ-LKNVVY 83 (288)
Q Consensus 8 ~~~~~~~~~~-~~~~~li~~DlDGTL~~~~~~~~~~~i~~~~~~aL~~L~~~--~~v~i~TGR~~~~l~~~~~-~~~~~~ 83 (288)
+..++++.++ .+++++|++||||||++... ....++++++++|++|.+. +.|+|+|||++..+.++|+ ++++++
T Consensus 582 l~~~~i~~~y~~~~~rlI~LDyDGTLlp~~~--~~~~p~~~~~~~L~~L~~d~g~~VaIvSGR~~~~L~~~f~~~~~l~l 659 (854)
T PLN02205 582 LSMEHIVSAYKRTTTRAILLDYDGTLMPQAS--IDKSPSSKSIDILNTLCRDKNNMVFIVSARSRKTLADWFSPCEKLGI 659 (854)
T ss_pred cCHHHHHHHHHhhcCeEEEEecCCcccCCcc--ccCCCCHHHHHHHHHHHhcCCCEEEEEeCCCHHHHHHHhCCCCCeEE
Confidence 4668888887 66889999999999997532 1457889999999999766 4899999999999999997 456899
Q ss_pred EccCceeEeCCCCCcccCCCCCcccccccCCCceeccCCCccchhHHHHHHHHHHHHhhccCCeEEEecCceEEEeccCC
Q 040896 84 AGSHGMDISTPAGSLKQNNPKHETRTVDEQGNEVVHFQPAQEFLPQIQEMIQVLEEKIKTIKGATVEDNKFCISVHFRRV 163 (288)
Q Consensus 84 i~~nGa~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~ 163 (288)
+|+||+++..+++. .|.. .....+ ..|.+.+...+..+.++++|.++|.+..++.|||+.+
T Consensus 660 aaEHG~~ir~~~~~---~w~~---------------~~~~~~-~~w~~~v~~i~~~y~ertpGs~IE~K~~slv~HyR~a 720 (854)
T PLN02205 660 AAEHGYFLRLKRDV---EWET---------------CVPVAD-CSWKQIAEPVMQLYTETTDGSTIEDKETALVWCYEDA 720 (854)
T ss_pred EEeCCEEEEeCCCc---eeee---------------cchhhh-HHHHHHHHHHHHHHhcCCCchhheecceEEEEehhhC
Confidence 99999999876542 1321 111111 1355556666777788899999999999999999988
Q ss_pred CcccHH----HHHHHHHHHHHhCCCeEEeCCceEEEEeCCCCCCHHHHHHHHHHh---cCCCCCCCceeEEEcCCcccHH
Q 040896 164 DEDDIN----TLQEMVNSIVEAYPNFRISGGKKVMEIRPCIDWDKGRALEYLLDT---FGFNNASDFLPLYIGDDKTDED 236 (288)
Q Consensus 164 ~~~~~~----~~~~~l~~~~~~~~~~~~~~~~~~ieI~~~~~~sKg~al~~l~~~---~~~~~~~~~~vv~~GDs~ND~~ 236 (288)
+++... ++...+++.+...+ +.+.+|+.++||.|+ ++|||.|+++|++. +|+..+ ++++|||+.||++
T Consensus 721 dpd~~~~qa~el~~~l~~~l~~~~-~~v~~G~~vvEV~p~-gvnKG~Al~~Ll~~~~~~g~~~d---~vl~~GDD~nDed 795 (854)
T PLN02205 721 DPDFGSCQAKELLDHLESVLANEP-VTVKSGQNIVEVKPQ-GVSKGLVAKRLLSIMQERGMLPD---FVLCIGDDRSDED 795 (854)
T ss_pred ChHHhhhhhHHHHHHHHHHHhcCc-eEEEECCcEEEEEeC-CCCHHHHHHHHHHHHHhcCCCcc---cEEEEcCCccHHH
Confidence 765422 34445555554443 677889999999999 99999999999854 577766 9999999999999
Q ss_pred HHHHHHhcCC---------ceEEEEecCCCCccceEEeCChhHHHHHHHHHHHHh
Q 040896 237 AFKVIRHMGR---------GYPIIVSSVPRETKALYSLRDPDEVMSFLRRLARWK 282 (288)
Q Consensus 237 Ml~~~~~~~~---------g~~v~v~na~~~~~A~~~~~~~~~v~~~l~~~~~~~ 282 (288)
||+.++.... +++|.|| ...+.|+|.++++++|.++|+.++...
T Consensus 796 MF~~~~~~~~g~~~~~~~~~~~v~VG--~~~S~A~y~L~d~~eV~~lL~~L~~~~ 848 (854)
T PLN02205 796 MFEVITSSMAGPSIAPRAEVFACTVG--QKPSKAKYYLDDTAEIVRLMQGLASVS 848 (854)
T ss_pred HHHHhhhhccCCcccccccceeEEEC--CCCccCeEecCCHHHHHHHHHHHHhcc
Confidence 9999974211 3788888 347899999999999999999998643
No 14
>PF02358 Trehalose_PPase: Trehalose-phosphatase; InterPro: IPR003337 Trehalose-phosphatases 3.1.3.12 from EC catalyse the de-phosphorylation of trehalose-6-phosphate to trehalose and orthophosphate. Trehalose is a common disaccharide of bacteria, fungi and invertebrates that appears to play a major role in desiccation tolerance. A pathway for trehalose biosynthesis may also exist in plants []. The trehalose-phosphatase signature is found in the C terminus of trehalose-6-phosphate synthase 2.4.1.15 from EC adjacent to the trehalose-6-phosphate synthase domain (see IPR001830 from INTERPRO). It would appear that the two equivalent genes in the Escherichia coli otsBA operon: otsA, the trehalose-6-phosphate synthase and otsB, trehalose-phosphatase (this family) have undergone gene fusion in most eukaryotes [].; GO: 0003824 catalytic activity, 0005992 trehalose biosynthetic process; PDB: 1U02_A.
Probab=100.00 E-value=1.7e-33 Score=242.37 Aligned_cols=224 Identities=40% Similarity=0.641 Sum_probs=147.3
Q ss_pred EEecCCccccCcCCCCCCCCCHHHHHHHHHHhhcC--CEEEEcCCChhhHhhhcCCCCeEEEccCceeEeCCCCCcccCC
Q 040896 25 FLDYDGTLSPIVEDPDKAFMSDTMRMAVHEVAHFF--PTAIVSGRCLDKVSRFVQLKNVVYAGSHGMDISTPAGSLKQNN 102 (288)
Q Consensus 25 ~~DlDGTL~~~~~~~~~~~i~~~~~~aL~~L~~~~--~v~i~TGR~~~~l~~~~~~~~~~~i~~nGa~i~~~~~~~~~~~ 102 (288)
|+|+||||.++..+|....++++++++|++|.+.+ .|+|+|||++..+..+.++++++++|+||+++..+++...
T Consensus 1 ~lDyDGTL~p~~~~p~~~~~~~~~~~~L~~La~~~~~~v~IvSGR~~~~~~~~~~~~~i~l~gehG~e~~~~~~~~~--- 77 (235)
T PF02358_consen 1 FLDYDGTLAPIVDDPDAAVPPPELRELLRALAADPNNTVAIVSGRSLDDLERFGGIPNIGLAGEHGAEIRRPGGSEW--- 77 (235)
T ss_dssp EEE-TTTSS---S-GGG----HHHHHHHHHHHHHSE--EEEE-SS-HHHHHHH-S-SS-EEEEGGGTEEEETTE-EE---
T ss_pred CcccCCccCCCCCCccccCCCHHHHHHHHHHhccCCCEEEEEEeCCHHHhHHhcCCCCceEEEEeeEEeccCccccc---
Confidence 79999999999888888899999999999999995 6999999999997777889999999999999998776421
Q ss_pred CCCcccccccCCCceeccCCCccchhHHHHHHHHHHHHhhccCCeEEEecCceEEEeccCCCcc----cHHHHHHHHHHH
Q 040896 103 PKHETRTVDEQGNEVVHFQPAQEFLPQIQEMIQVLEEKIKTIKGATVEDNKFCISVHFRRVDED----DINTLQEMVNSI 178 (288)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~----~~~~~~~~l~~~ 178 (288)
. .........|++.+.+.++.+.++++|+++|++.++++|||+++++. ...++.+.+.+.
T Consensus 78 ~----------------~~~~~~~~~~~~~~~~~l~~~~~~~pG~~iE~K~~sv~~Hyr~~~~~~~~~~~~~l~~~l~~~ 141 (235)
T PF02358_consen 78 T----------------NLPADEDLEWKDEVREILEYFAERTPGSFIEDKEFSVAFHYRNAPPEFGEAQARELAEQLREI 141 (235)
T ss_dssp E-----------------TTGGGGHHHHHHHHHHHTTHHHHSTT-EEEEETTEEEEE-TTS-ST----THHHHHHHHHHH
T ss_pred c----------------ccccccchHHHHHHHHHHHHHHhhccCcEEEECCeEEEEEecCCCcchhhhHHHHHHHHHHHH
Confidence 1 11122234688888888888888899999999999999999998876 234566677777
Q ss_pred HHhCCCeEEeCCceEEEEeCCCCCCHHHHHHHHHHhcCCCCCCCceeEEEcCCcccHHHHHHHHhc-CCceEEEEecCC-
Q 040896 179 VEAYPNFRISGGKKVMEIRPCIDWDKGRALEYLLDTFGFNNASDFLPLYIGDDKTDEDAFKVIRHM-GRGYPIIVSSVP- 256 (288)
Q Consensus 179 ~~~~~~~~~~~~~~~ieI~~~~~~sKg~al~~l~~~~~~~~~~~~~vv~~GDs~ND~~Ml~~~~~~-~~g~~v~v~na~- 256 (288)
+...+++.+..|+.++||.|+ +++||.|+++|++.++......+.++++||+..|++||++++.. ..|+++.|+...
T Consensus 142 ~~~~~~~~v~~g~~~vEvrp~-~~~KG~av~~ll~~~~~~~~~~~~~l~~GDD~tDE~~f~~~~~~~~~~~~i~V~~~~~ 220 (235)
T PF02358_consen 142 LASHPGLEVVPGKKVVEVRPP-GVNKGSAVRRLLEELPFAGPKPDFVLYIGDDRTDEDAFRALRELEEGGFGIKVGSVSV 220 (235)
T ss_dssp HHHH-T-EEEE-SSEEEEE-T-T--HHHHHHHHHTTS---------EEEEESSHHHHHHHHTTTTS----EEEEES----
T ss_pred HHhCCCEEEEECCCEEEEEeC-CCChHHHHHHHHHhcCccccccceeEEecCCCCCHHHHHHHHhcccCCCCeEEEeecc
Confidence 766667999999999999999 99999999999999987522223999999999999999999875 127899998875
Q ss_pred --CCccceEEeCCh
Q 040896 257 --RETKALYSLRDP 268 (288)
Q Consensus 257 --~~~~A~~~~~~~ 268 (288)
..+.|+|.++++
T Consensus 221 ~~~~t~A~y~l~~p 234 (235)
T PF02358_consen 221 GEKPTAASYRLDDP 234 (235)
T ss_dssp --------------
T ss_pred cccccccccccccC
Confidence 358999998875
No 15
>PRK01158 phosphoglycolate phosphatase; Provisional
Probab=100.00 E-value=1.8e-32 Score=235.02 Aligned_cols=214 Identities=17% Similarity=0.200 Sum_probs=146.5
Q ss_pred cEEEEEecCCccccCcCCCCCCCCCHHHHHHHHHHhhcC-CEEEEcCCChhhHhhhc---CCCCeEEEccCceeEeCCC-
Q 040896 21 KIVVFLDYDGTLSPIVEDPDKAFMSDTMRMAVHEVAHFF-PTAIVSGRCLDKVSRFV---QLKNVVYAGSHGMDISTPA- 95 (288)
Q Consensus 21 ~~li~~DlDGTL~~~~~~~~~~~i~~~~~~aL~~L~~~~-~v~i~TGR~~~~l~~~~---~~~~~~~i~~nGa~i~~~~- 95 (288)
.|+|++||||||++ +++.+++.++++|++|++.+ +|++||||++..+.+++ +++ .++|++||+.|+...
T Consensus 3 ~kli~~DlDGTLl~-----~~~~i~~~~~~al~~l~~~G~~~~iaTGR~~~~~~~~~~~l~~~-~~~i~~nGa~i~~~~~ 76 (230)
T PRK01158 3 IKAIAIDIDGTITD-----KDRRLSLKAVEAIRKAEKLGIPVILATGNVLCFARAAAKLIGTS-GPVIAENGGVISVGFD 76 (230)
T ss_pred eeEEEEecCCCcCC-----CCCccCHHHHHHHHHHHHCCCEEEEEcCCchHHHHHHHHHhCCC-CcEEEecCeEEEEcCC
Confidence 58999999999998 46679999999999999885 99999999999988764 443 579999999998752
Q ss_pred CCcccCCCCCcccccccCCCceeccCCCccchhHHHHHHHHHHHHhhccCCeEEEe-cCceE--EEeccCCCcccHHHHH
Q 040896 96 GSLKQNNPKHETRTVDEQGNEVVHFQPAQEFLPQIQEMIQVLEEKIKTIKGATVED-NKFCI--SVHFRRVDEDDINTLQ 172 (288)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~-~~~~~--~~~~~~~~~~~~~~~~ 172 (288)
+.... ..+.. ....+.+.+..........+... ..... ...... . ..
T Consensus 77 ~~~~~-------------------~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~----~~ 126 (230)
T PRK01158 77 GKRIF-------------------LGDIE----ECEKAYSELKKRFPEASTSLTKLDPDYRKTEVALRRT---V----PV 126 (230)
T ss_pred CCEEE-------------------EcchH----HHHHHHHHHHHhccccceeeecCCcccccceeeeccc---c----cH
Confidence 22110 00101 11122222211110000000000 00000 000111 1 01
Q ss_pred HHHHHHHHhCC-CeEEeCCceEEEEeCCCCCCHHHHHHHHHHhcCCCCCCCceeEEEcCCcccHHHHHHHHhcCCceEEE
Q 040896 173 EMVNSIVEAYP-NFRISGGKKVMEIRPCIDWDKGRALEYLLDTFGFNNASDFLPLYIGDDKTDEDAFKVIRHMGRGYPII 251 (288)
Q Consensus 173 ~~l~~~~~~~~-~~~~~~~~~~ieI~~~~~~sKg~al~~l~~~~~~~~~~~~~vv~~GDs~ND~~Ml~~~~~~~~g~~v~ 251 (288)
+.+.+.++.+. .+.+..+..++||.|+ ++|||.|+++++++++++.+ ++++|||+.||++||+.+ |++++
T Consensus 127 ~~~~~~l~~~~~~~~~~~~~~~~ei~~~-~~~Kg~al~~l~~~~~i~~~---~~i~~GD~~NDi~m~~~a-----g~~va 197 (230)
T PRK01158 127 EEVRELLEELGLDLEIVDSGFAIHIKSP-GVNKGTGLKKLAELMGIDPE---EVAAIGDSENDLEMFEVA-----GFGVA 197 (230)
T ss_pred HHHHHHHHHcCCcEEEEecceEEEEeeC-CCChHHHHHHHHHHhCCCHH---HEEEECCchhhHHHHHhc-----CceEE
Confidence 23334444442 3455555578999999 99999999999999999877 999999999999999999 89999
Q ss_pred EecCCC--CccceEEeC--ChhHHHHHHHHHH
Q 040896 252 VSSVPR--ETKALYSLR--DPDEVMSFLRRLA 279 (288)
Q Consensus 252 v~na~~--~~~A~~~~~--~~~~v~~~l~~~~ 279 (288)
|+||.+ +..|++++. +.+||+++|++++
T Consensus 198 m~Na~~~vk~~a~~v~~~n~~~Gv~~~l~~~~ 229 (230)
T PRK01158 198 VANADEELKEAADYVTEKSYGEGVAEAIEHLL 229 (230)
T ss_pred ecCccHHHHHhcceEecCCCcChHHHHHHHHh
Confidence 999986 468999986 4779999998875
No 16
>PLN02887 hydrolase family protein
Probab=100.00 E-value=1.3e-31 Score=254.29 Aligned_cols=242 Identities=19% Similarity=0.184 Sum_probs=147.7
Q ss_pred cCCcEEEEEecCCccccCcCCCCCCCCCHHHHHHHHHHhhcC-CEEEEcCCChhhHhhhc---CCCC--------eEEEc
Q 040896 18 KGKKIVVFLDYDGTLSPIVEDPDKAFMSDTMRMAVHEVAHFF-PTAIVSGRCLDKVSRFV---QLKN--------VVYAG 85 (288)
Q Consensus 18 ~~~~~li~~DlDGTL~~~~~~~~~~~i~~~~~~aL~~L~~~~-~v~i~TGR~~~~l~~~~---~~~~--------~~~i~ 85 (288)
.-+.|+||+||||||++ +++.+++.++++|+++++++ .|+|||||++..+.+++ ++.. .++|+
T Consensus 305 ~~~iKLIa~DLDGTLLn-----~d~~Is~~t~eAI~kl~ekGi~~vIATGR~~~~i~~~l~~L~l~~~~~~I~~~~p~I~ 379 (580)
T PLN02887 305 KPKFSYIFCDMDGTLLN-----SKSQISETNAKALKEALSRGVKVVIATGKARPAVIDILKMVDLAGKDGIISESSPGVF 379 (580)
T ss_pred ccCccEEEEeCCCCCCC-----CCCccCHHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHhCcccccceEeecccEEe
Confidence 34679999999999998 56789999999999999995 99999999999988764 3321 25778
Q ss_pred cCceeEeCCCCCccc-CCCC-C-cccccc---cCCCceeccCCCccchhHHHHHHHHHHHHhhccCCeEE-------E-e
Q 040896 86 SHGMDISTPAGSLKQ-NNPK-H-ETRTVD---EQGNEVVHFQPAQEFLPQIQEMIQVLEEKIKTIKGATV-------E-D 151 (288)
Q Consensus 86 ~nGa~i~~~~~~~~~-~~~~-~-~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------e-~ 151 (288)
+||+.|+..++.... ..-. . ..+.+. ..+.....+....-|......................+ . .
T Consensus 380 ~NGA~I~d~~g~~I~~~~L~~e~v~eIi~~~~~~~i~~~~~~~d~~y~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~ 459 (580)
T PLN02887 380 LQGLLVYGRQGREIYRSNLDQEVCREACLYSLEHKIPLIAFSQDRCLTLFDHPLVDSLHTIYHEPKAEIMSSVDQLLAAA 459 (580)
T ss_pred ecCeEEEECCCcEEEEEeCCHHHHHHHHHHHHHcCCeEEEEECCeEEEecCchHHHHHHHhhccccccccCCHHHhhccc
Confidence 899999864443221 0000 0 000000 00000000000000000000000000000000000000 0 0
Q ss_pred cCceEEEeccCCCcccHHHHHHHHHHHH-HhCC-CeEE-eCCceEEEEeCCCCCCHHHHHHHHHHhcCCCCCCCceeEEE
Q 040896 152 NKFCISVHFRRVDEDDINTLQEMVNSIV-EAYP-NFRI-SGGKKVMEIRPCIDWDKGRALEYLLDTFGFNNASDFLPLYI 228 (288)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~-~~~~-~~~~~~ieI~~~~~~sKg~al~~l~~~~~~~~~~~~~vv~~ 228 (288)
....+.+ +. .+ ....+.+.+.+ +.+. .+.+ .++..++||+|+ |+|||.||++|++++|++.+ +|++|
T Consensus 460 ~i~Ki~~-~~--~~---e~~~~~l~~~l~~~~~~~~~v~~S~~~~lEI~p~-gvSKG~ALk~L~e~lGI~~e---eviAF 529 (580)
T PLN02887 460 DIQKVIF-LD--TA---EGVSSVLRPYWSEATGDRANVVQAQPDMLEIVPP-GTSKGNGVKMLLNHLGVSPD---EIMAI 529 (580)
T ss_pred CeeEEEE-Ec--Ch---HHHHHHHHHHHHHHhcCcEEEEEecCcEEEEecC-CCCHHHHHHHHHHHcCCCHH---HEEEE
Confidence 0001111 11 11 11112222222 2222 3554 456789999999 99999999999999999988 99999
Q ss_pred cCCcccHHHHHHHHhcCCceEEEEecCCC--CccceEEeC--ChhHHHHHHHHHH
Q 040896 229 GDDKTDEDAFKVIRHMGRGYPIIVSSVPR--ETKALYSLR--DPDEVMSFLRRLA 279 (288)
Q Consensus 229 GDs~ND~~Ml~~~~~~~~g~~v~v~na~~--~~~A~~~~~--~~~~v~~~l~~~~ 279 (288)
||+.||++||+++ |+||||+||.+ +.+|++|+. +.+||+++|++++
T Consensus 530 GDs~NDIeMLe~A-----G~gVAMgNA~eeVK~~Ad~VT~sNdEDGVA~aLek~~ 579 (580)
T PLN02887 530 GDGENDIEMLQLA-----SLGVALSNGAEKTKAVADVIGVSNDEDGVADAIYRYA 579 (580)
T ss_pred ecchhhHHHHHHC-----CCEEEeCCCCHHHHHhCCEEeCCCCcCHHHHHHHHhh
Confidence 9999999999999 89999999977 478999986 4789999999874
No 17
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=99.97 E-value=5.4e-30 Score=252.91 Aligned_cols=253 Identities=15% Similarity=0.173 Sum_probs=194.4
Q ss_pred hhHHHHHHhh-cCCcEEEEEecCCccccCcC---CCCCCCCCHHHHHHHHHHhhc--CCEEEEcCCChhhHhhhcCCCCe
Q 040896 8 DTFDRMVAAA-KGKKIVVFLDYDGTLSPIVE---DPDKAFMSDTMRMAVHEVAHF--FPTAIVSGRCLDKVSRFVQLKNV 81 (288)
Q Consensus 8 ~~~~~~~~~~-~~~~~li~~DlDGTL~~~~~---~~~~~~i~~~~~~aL~~L~~~--~~v~i~TGR~~~~l~~~~~~~~~ 81 (288)
++.+.+..++ .+++++||+|+||||++... +|....++++++++|++|.+. +.|+|+|||+...+.++++.+++
T Consensus 493 l~~~~~~~~y~~a~~rll~LDyDGTL~~~~~~~~~p~~a~p~~~l~~~L~~L~~d~~~~V~IvSGR~~~~L~~~~~~~~l 572 (797)
T PLN03063 493 LPEQDVIQQYSKSNNRLLILGFYGTLTEPRNSQIKEMDLGLHPELKETLKALCSDPKTTVVVLSRSGKDILDKNFGEYNI 572 (797)
T ss_pred CCHHHHHHHHHhccCeEEEEecCccccCCCCCccccccCCCCHHHHHHHHHHHcCCCCEEEEEeCCCHHHHHHHhCCCCC
Confidence 4678888887 56789999999999998644 235567899999999999988 48999999999999999987678
Q ss_pred EEEccCceeEeCCCCCcccCCCCCcccccccCCCceeccCCCccchhHHHHHHHHHHHHhhccCCeEEEecCceEEEecc
Q 040896 82 VYAGSHGMDISTPAGSLKQNNPKHETRTVDEQGNEVVHFQPAQEFLPQIQEMIQVLEEKIKTIKGATVEDNKFCISVHFR 161 (288)
Q Consensus 82 ~~i~~nGa~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~ 161 (288)
+++|+||+++..+++. |... .....+ ..|.+.+.+.++.+.+++||+++|.+.+++.|||+
T Consensus 573 ~l~aeHG~~~r~~~~~----w~~~--------------~~~~~~-~~w~~~v~~~l~~~~~rtpGs~iE~K~~sla~HyR 633 (797)
T PLN03063 573 WLAAENGMFLRHTSGE----WVTT--------------MPEHMN-LDWVDGVKNVFKYFTDRTPRSYVEKSETSLVWNYE 633 (797)
T ss_pred cEEEeCCEEEecCCCc----eeec--------------cccccC-hhHHHHHHHHHHHHHHhCCCcEEEEcCeEEEEEcC
Confidence 9999999998765543 3210 001001 25777788888888899999999999999999999
Q ss_pred CCCcccHHHHH-HHHHHHHHh---CCCeEEeCCceEEEEeCCCCCCHHHHHHHHHHhcCC---CCCCCceeEEEcCCc-c
Q 040896 162 RVDEDDINTLQ-EMVNSIVEA---YPNFRISGGKKVMEIRPCIDWDKGRALEYLLDTFGF---NNASDFLPLYIGDDK-T 233 (288)
Q Consensus 162 ~~~~~~~~~~~-~~l~~~~~~---~~~~~~~~~~~~ieI~~~~~~sKg~al~~l~~~~~~---~~~~~~~vv~~GDs~-N 233 (288)
+++++...... +.+..+.+. .+++.+..|+..+||.|. ++|||.|++.|++.+.. .....+.++|+||+. .
T Consensus 634 ~adp~~g~~~a~el~~~l~~~~~~~~~~~v~~Gk~vvEvrp~-gvnKG~Av~~ll~~~~~~~~~~~~~dfvl~~Gdd~~~ 712 (797)
T PLN03063 634 YADVEFGRAQARDMLQHLWAGPISNASVDVVRGQKSVEVHAI-GVTKGAAIGRILGEIVHNKSMTTPIDFVFCSGYFLEK 712 (797)
T ss_pred CCChHHHHHHHHHHHHHHHHhhccCCCcEEEECCeEEEEEcC-CCChHHHHHHHHHHhhhccccCCCCCEEEEeCCCCCC
Confidence 98765422222 222222222 235889999999999999 99999999999998621 111124999999985 4
Q ss_pred cHHHHHHHHhcC----------------------------CceEEEEecCCCCccceEEeCChhHHHHHHHHHHHHh
Q 040896 234 DEDAFKVIRHMG----------------------------RGYPIIVSSVPRETKALYSLRDPDEVMSFLRRLARWK 282 (288)
Q Consensus 234 D~~Ml~~~~~~~----------------------------~g~~v~v~na~~~~~A~~~~~~~~~v~~~l~~~~~~~ 282 (288)
|++||++++... +-|+|.||. ..++|+|+++++++|.++|+.++..+
T Consensus 713 DEdmF~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~VG~--~~s~A~y~l~~~~eV~~lL~~l~~~~ 787 (797)
T PLN03063 713 DEDVYTFFEPEILSKKKSSSSNYSDSDKKVSSNLVDLKGENYFSCAIGQ--ARTKARYVLDSSNDVVSLLHKLAVAN 787 (797)
T ss_pred cHHHHHhccccccccccccccccccccccccccccccccCceEEEEECC--CCccCeecCCCHHHHHHHHHHHhccC
Confidence 999999886311 016677874 47899999999999999999998654
No 18
>PRK10530 pyridoxal phosphate (PLP) phosphatase; Provisional
Probab=99.97 E-value=1.8e-30 Score=228.10 Aligned_cols=239 Identities=14% Similarity=0.133 Sum_probs=144.9
Q ss_pred cEEEEEecCCccccCcCCCCCCCCCHHHHHHHHHHhhcC-CEEEEcCCChhhHhhhc---CCCCeEEEccCceeEeCC-C
Q 040896 21 KIVVFLDYDGTLSPIVEDPDKAFMSDTMRMAVHEVAHFF-PTAIVSGRCLDKVSRFV---QLKNVVYAGSHGMDISTP-A 95 (288)
Q Consensus 21 ~~li~~DlDGTL~~~~~~~~~~~i~~~~~~aL~~L~~~~-~v~i~TGR~~~~l~~~~---~~~~~~~i~~nGa~i~~~-~ 95 (288)
.|+||+||||||++ +++.++++++++|+++++++ .|+|||||++..+.+++ ++. .++||+||+.|+.. +
T Consensus 3 ~kli~~DlDGTLl~-----~~~~i~~~~~~ai~~~~~~G~~~~iaTGR~~~~~~~~~~~l~~~-~~~I~~NGa~i~d~~~ 76 (272)
T PRK10530 3 YRVIALDLDGTLLT-----PKKTILPESLEALARAREAGYKVIIVTGRHHVAIHPFYQALALD-TPAICCNGTYLYDYQA 76 (272)
T ss_pred ccEEEEeCCCceEC-----CCCccCHHHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHhcCCC-CCEEEcCCcEEEecCC
Confidence 58999999999998 46679999999999999995 99999999999988875 332 46999999999964 3
Q ss_pred CCcccC-CCCC--cccccc---cCCCceeccCCCccch-hHHHHHHHHHHHHhhccCC----eEEEe---------cCce
Q 040896 96 GSLKQN-NPKH--ETRTVD---EQGNEVVHFQPAQEFL-PQIQEMIQVLEEKIKTIKG----ATVED---------NKFC 155 (288)
Q Consensus 96 ~~~~~~-~~~~--~~~~~~---~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~----~~~e~---------~~~~ 155 (288)
+..... +-.. ..+.++ ..+..........-+. ......... ..+....+. .+... ....
T Consensus 77 ~~~l~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (272)
T PRK10530 77 KKVLEADPLPVQQALQVIEMLDEHQIHGLMYVDDAMLYEHPTGHVIRT-LNWAQTLPPEQRPTFTQVDSLAQAARQVNAI 155 (272)
T ss_pred CEEEEecCCCHHHHHHHHHHHHhCCcEEEEEcCCceEecCchHHHHHH-hhhhhccchhcccceEEcccHHHHHhhcCCc
Confidence 332211 0000 000000 0000000000000000 000000000 000000000 00000 0000
Q ss_pred EEEeccCCCcccHHHHHHHHHHHHHhCCCeEE-eCCceEEEEeCCCCCCHHHHHHHHHHhcCCCCCCCceeEEEcCCccc
Q 040896 156 ISVHFRRVDEDDINTLQEMVNSIVEAYPNFRI-SGGKKVMEIRPCIDWDKGRALEYLLDTFGFNNASDFLPLYIGDDKTD 234 (288)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~ieI~~~~~~sKg~al~~l~~~~~~~~~~~~~vv~~GDs~ND 234 (288)
..+.....+. ....+..+.+.+.+ ++.+ .++..++||+|+ ++|||.|++++++++|++.+ ++++|||+.||
T Consensus 156 ~~i~~~~~~~---~~~~~~~~~~~~~~-~~~~~~s~~~~~ei~~~-~~~K~~~l~~l~~~~gi~~~---e~i~~GD~~ND 227 (272)
T PRK10530 156 WKFALTHEDL---PQLQHFAKHVEHEL-GLECEWSWHDQVDIARK-GNSKGKRLTQWVEAQGWSMK---NVVAFGDNFND 227 (272)
T ss_pred EEEEEecCCH---HHHHHHHHHHhhhc-CceEEEecCceEEEecC-CCChHHHHHHHHHHcCCCHH---HeEEeCCChhh
Confidence 0010100010 11111222233333 3433 345578999999 99999999999999999987 99999999999
Q ss_pred HHHHHHHHhcCCceEEEEecCCCC--ccceEEeC--ChhHHHHHHHHHH
Q 040896 235 EDAFKVIRHMGRGYPIIVSSVPRE--TKALYSLR--DPDEVMSFLRRLA 279 (288)
Q Consensus 235 ~~Ml~~~~~~~~g~~v~v~na~~~--~~A~~~~~--~~~~v~~~l~~~~ 279 (288)
++||+.+ |++|+|+|+.+. ..|++++. +.+||+++|++++
T Consensus 228 i~m~~~a-----g~~vamgna~~~lk~~Ad~v~~~n~~dGv~~~l~~~~ 271 (272)
T PRK10530 228 ISMLEAA-----GLGVAMGNADDAVKARADLVIGDNTTPSIAEFIYSHV 271 (272)
T ss_pred HHHHHhc-----CceEEecCchHHHHHhCCEEEecCCCCcHHHHHHHHh
Confidence 9999999 899999999653 68999986 4779999999875
No 19
>PF08282 Hydrolase_3: haloacid dehalogenase-like hydrolase; InterPro: IPR013200 The Haloacid Dehydrogenase (HAD) superfamily includes phosphatases, phosphonatases, P-type ATPases, beta-phosphoglucomutases, phosphomannomutases, and dehalogenases, which are involved in a variety of cellular processes ranging from amino acid biosynthesis to detoxification []. This HAD domain is found in several distinct enzymes including: Phospholipid-transporting ATPase 1 (3.6.3.1 from EC), a putative lipid-flipping enzyme involved in cold tolerance in Arabidopsis [] 3-deoxy-D-manno-octulosonate (KDO) 8-phosphate phosphatase (3.1.3.45 from EC), which catalyses the final step in the biosynthesis of KDO - a component of lipopolysaccharide in Gram-negative bacteria [] Mannosyl-3-phosphoglycerate phosphatase (3.1.3.70 from EC), which hydrolyzes mannosyl-3-phosphoglycerate to form the osmolyte mannosylglycerate [] Phosphoglycolate phopshatase (3.1.3.18 from EC), which catalyses the dephosphorylation of 2-phosphoglycolate [] ; PDB: 2B30_B 3R4C_A 1XVI_B 3IJ5_B 3MMZ_C 3L7Y_A 1XPJ_C 1RLT_B 1RLM_B 2HF2_A ....
Probab=99.97 E-value=9.3e-31 Score=225.92 Aligned_cols=210 Identities=23% Similarity=0.366 Sum_probs=141.7
Q ss_pred EEEecCCccccCcCCCCCCCCCHHHHHHHHHHhhcC-CEEEEcCCChhhHhhhcC-CC-CeEEEccCceeEeCCCCCccc
Q 040896 24 VFLDYDGTLSPIVEDPDKAFMSDTMRMAVHEVAHFF-PTAIVSGRCLDKVSRFVQ-LK-NVVYAGSHGMDISTPAGSLKQ 100 (288)
Q Consensus 24 i~~DlDGTL~~~~~~~~~~~i~~~~~~aL~~L~~~~-~v~i~TGR~~~~l~~~~~-~~-~~~~i~~nGa~i~~~~~~~~~ 100 (288)
||+||||||++ +++.++++++++|++|++++ .|++||||++..+.+++. ++ ..++|++||+.+....+....
T Consensus 1 i~~DlDGTLl~-----~~~~i~~~~~~al~~l~~~g~~~~i~TGR~~~~~~~~~~~~~~~~~~I~~nGa~i~~~~~~~l~ 75 (254)
T PF08282_consen 1 IFSDLDGTLLN-----SDGKISPETIEALKELQEKGIKLVIATGRSYSSIKRLLKELGIDDYFICSNGALIDDPKGKILY 75 (254)
T ss_dssp EEEECCTTTCS-----TTSSSCHHHHHHHHHHHHTTCEEEEECSSTHHHHHHHHHHTTHCSEEEEGGGTEEEETTTEEEE
T ss_pred cEEEECCceec-----CCCeeCHHHHHHHHhhcccceEEEEEccCcccccccccccccchhhhcccccceeeecccccch
Confidence 79999999999 56779999999999999885 899999999999999864 22 268999999999444444321
Q ss_pred CCCCCcccccccCCCceeccCCCccchhHHHHHHHHHHHHh-----hccCCeEEEec-----------------------
Q 040896 101 NNPKHETRTVDEQGNEVVHFQPAQEFLPQIQEMIQVLEEKI-----KTIKGATVEDN----------------------- 152 (288)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~e~~----------------------- 152 (288)
.+ .... .....+.+.+.... ......+....
T Consensus 76 ~~------------------~i~~---~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (254)
T PF08282_consen 76 EK------------------PIDS---DDVKKILKYLKEHNISFFFYTDDDIYIYENKDEEELFFEHKFFNFKESIVSED 134 (254)
T ss_dssp EE------------------SB-H---HHHHHHHHHHHHTTCEEEEEESSEEEESSTTCHHHHHHHHHHTSCEEEESHHH
T ss_pred hh------------------heec---cchhheeehhhhcccccccccceeeecccccccchhhhhhccccccccccccc
Confidence 00 0000 12222222222110 00000000000
Q ss_pred ------CceEEEeccCCCcccHHHHHHHHHH-HHHhCCC-eE-EeCCceEEEEeCCCCCCHHHHHHHHHHhcCCCCCCCc
Q 040896 153 ------KFCISVHFRRVDEDDINTLQEMVNS-IVEAYPN-FR-ISGGKKVMEIRPCIDWDKGRALEYLLDTFGFNNASDF 223 (288)
Q Consensus 153 ------~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~-~~-~~~~~~~ieI~~~~~~sKg~al~~l~~~~~~~~~~~~ 223 (288)
...+.+. .+. +..+.+.+ +-+.+++ .. +.++..++||+|+ ++|||+|+++|++++|++.+
T Consensus 135 ~~~~~~i~ki~~~---~~~----~~~~~l~~~l~~~~~~~~~~~~~~~~~lei~~~-~vsK~~ai~~l~~~~~i~~~--- 203 (254)
T PF08282_consen 135 DLEDEEIFKILFF---PDP----EDLEQLREELKKKFPNLIDVVRSSPYFLEITPK-GVSKGSAIKYLLEYLGISPE--- 203 (254)
T ss_dssp HHHCSSESEEEEE---SCH----HHHHHHHHHHHHHHTTTEEEEEEETTEEEEEET-TSSHHHHHHHHHHHHTTSGG---
T ss_pred ccccccceeeecc---ccc----hhhhhhhhhhccccCcceeEEEecccceEEeeC-CCCHHHHHHHHhhhcccccc---
Confidence 0111111 011 22222322 2233333 23 4567899999999 99999999999999999987
Q ss_pred eeEEEcCCcccHHHHHHHHhcCCceEEEEecCCCC--ccceEEeCC--hhHHHHHH
Q 040896 224 LPLYIGDDKTDEDAFKVIRHMGRGYPIIVSSVPRE--TKALYSLRD--PDEVMSFL 275 (288)
Q Consensus 224 ~vv~~GDs~ND~~Ml~~~~~~~~g~~v~v~na~~~--~~A~~~~~~--~~~v~~~l 275 (288)
++++||||.||++||+.+ |+||+|+||.+. .+|++++++ .+||+++|
T Consensus 204 ~~~~~GD~~ND~~Ml~~~-----~~~~am~na~~~~k~~a~~i~~~~~~~gv~~~i 254 (254)
T PF08282_consen 204 DIIAFGDSENDIEMLELA-----GYSVAMGNATPELKKAADYITPSNNDDGVAKAI 254 (254)
T ss_dssp GEEEEESSGGGHHHHHHS-----SEEEEETTS-HHHHHHSSEEESSGTCTHHHHHH
T ss_pred eeEEeecccccHhHHhhc-----CeEEEEcCCCHHHHHhCCEEecCCCCChHHHhC
Confidence 999999999999999999 899999999874 799999874 46888875
No 20
>TIGR01487 SPP-like sucrose-phosphate phosphatase-like hydrolase, Archaeal. TIGR01482, in turn, is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases.
Probab=99.97 E-value=7.1e-31 Score=223.11 Aligned_cols=208 Identities=18% Similarity=0.237 Sum_probs=141.2
Q ss_pred cEEEEEecCCccccCcCCCCCCCCCHHHHHHHHHHhhcC-CEEEEcCCChhhHhhhcC-CC-CeEEEccCceeEeCCCCC
Q 040896 21 KIVVFLDYDGTLSPIVEDPDKAFMSDTMRMAVHEVAHFF-PTAIVSGRCLDKVSRFVQ-LK-NVVYAGSHGMDISTPAGS 97 (288)
Q Consensus 21 ~~li~~DlDGTL~~~~~~~~~~~i~~~~~~aL~~L~~~~-~v~i~TGR~~~~l~~~~~-~~-~~~~i~~nGa~i~~~~~~ 97 (288)
.|+|++||||||++ +++.+++.++++|++|++.+ .|++||||++..+.+++. ++ ..++|++||++|+..++.
T Consensus 1 ik~v~~DlDGTLl~-----~~~~i~~~~~~~i~~l~~~g~~~~~~TGR~~~~~~~~~~~l~~~~~~i~~NGa~i~~~~~~ 75 (215)
T TIGR01487 1 IKLVAIDIDGTLTE-----PNRMISERAIEAIRKAEKKGIPVSLVTGNTVPFARALAVLIGTSGPVVAENGGVIFYNKED 75 (215)
T ss_pred CcEEEEecCCCcCC-----CCcccCHHHHHHHHHHHHCCCEEEEEcCCcchhHHHHHHHhCCCCcEEEccCcEEEeCCCc
Confidence 37999999999998 56689999999999999995 999999999999888753 22 247999999999986432
Q ss_pred cccCCCCCcccccccCCCceeccCCCccchhHHHHHHHHHHHHhhccCCeEEEecCceEEEeccCCCcccHHHHHHHHHH
Q 040896 98 LKQNNPKHETRTVDEQGNEVVHFQPAQEFLPQIQEMIQVLEEKIKTIKGATVEDNKFCISVHFRRVDEDDINTLQEMVNS 177 (288)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~l~~ 177 (288)
.. +. .....+. ........ +......... ......+.. .... .+.+.+
T Consensus 76 ~~--~~-----------------~~~~~~~--~~~~~~~~--~~~~~~~~~~--~~~~~~~~~---~~~~----~~~~~~ 123 (215)
T TIGR01487 76 IF--LA-----------------NMEEEWF--LDEEKKKR--FPRDRLSNEY--PRASLVIMR---EGKD----VDEVRE 123 (215)
T ss_pred EE--Ee-----------------cccchhh--HHHhhhhh--hhhhhccccc--ceeEEEEec---CCcc----HHHHHH
Confidence 11 00 0000000 00000000 0000000000 001111111 1111 123334
Q ss_pred HHHhCCCeEEeCCceEEEEeCCCCCCHHHHHHHHHHhcCCCCCCCceeEEEcCCcccHHHHHHHHhcCCceEEEEecCCC
Q 040896 178 IVEAYPNFRISGGKKVMEIRPCIDWDKGRALEYLLDTFGFNNASDFLPLYIGDDKTDEDAFKVIRHMGRGYPIIVSSVPR 257 (288)
Q Consensus 178 ~~~~~~~~~~~~~~~~ieI~~~~~~sKg~al~~l~~~~~~~~~~~~~vv~~GDs~ND~~Ml~~~~~~~~g~~v~v~na~~ 257 (288)
.++.. ++.+..+..++||+|+ +++||.|+++++++++++.+ ++++||||.||++||+.+ |++++|+|+.+
T Consensus 124 ~l~~~-~~~~~~~~~~~ei~~~-~~~K~~~i~~l~~~~~i~~~---~~i~iGDs~ND~~ml~~a-----g~~vam~na~~ 193 (215)
T TIGR01487 124 IIKER-GLNLVDSGFAIHIMKK-GVDKGVGVEKLKELLGIKPE---EVAAIGDSENDIDLFRVV-----GFKVAVANADD 193 (215)
T ss_pred HHHhC-CeEEEecCceEEEecC-CCChHHHHHHHHHHhCCCHH---HEEEECCCHHHHHHHHhC-----CCeEEcCCccH
Confidence 44443 4665555678999999 99999999999999999977 999999999999999999 89999999977
Q ss_pred C--ccceEEeC--ChhHHHHHH
Q 040896 258 E--TKALYSLR--DPDEVMSFL 275 (288)
Q Consensus 258 ~--~~A~~~~~--~~~~v~~~l 275 (288)
+ .+|+|++. +.+||+++|
T Consensus 194 ~~k~~A~~v~~~~~~~Gv~~~l 215 (215)
T TIGR01487 194 QLKEIADYVTSNPYGEGVVEVL 215 (215)
T ss_pred HHHHhCCEEcCCCCCchhhhhC
Confidence 4 68999986 467888764
No 21
>TIGR01482 SPP-subfamily Sucrose-phosphate phosphatase subfamily. catalyze the same reaction as SPP.
Probab=99.97 E-value=7.8e-31 Score=224.11 Aligned_cols=211 Identities=18% Similarity=0.227 Sum_probs=139.6
Q ss_pred EEEecCCccccCcCCCCCCCCCHHHHHHHHHHhhcC-CEEEEcCCChhhHhhhc---CCCCeEEEccCceeEeCCCCCcc
Q 040896 24 VFLDYDGTLSPIVEDPDKAFMSDTMRMAVHEVAHFF-PTAIVSGRCLDKVSRFV---QLKNVVYAGSHGMDISTPAGSLK 99 (288)
Q Consensus 24 i~~DlDGTL~~~~~~~~~~~i~~~~~~aL~~L~~~~-~v~i~TGR~~~~l~~~~---~~~~~~~i~~nGa~i~~~~~~~~ 99 (288)
|+|||||||++ +++.+++.++++|++|++.+ .|++||||++..+.+++ ++ ..++|++||+.|+..++...
T Consensus 1 i~~DlDGTLl~-----~~~~i~~~~~~al~~l~~~Gi~~~~aTGR~~~~~~~~~~~l~~-~~~~i~~nGa~i~~~~~~~~ 74 (225)
T TIGR01482 1 IASDIDGTLTD-----PNRAINESALEAIRKAESVGIPVVLVTGNSVQFARALAKLIGT-PDPVIAENGGEISYNEGMDD 74 (225)
T ss_pred CeEeccCccCC-----CCcccCHHHHHHHHHHHHCCCEEEEEcCCchHHHHHHHHHhCC-CCeEEEecCcEEEeCCCCce
Confidence 68999999998 45679999999999999995 99999999999888764 43 36799999999987643211
Q ss_pred cCCCCCcccccccCCCceeccCCCccchhHHHHHHHHHHHHhhccCCeEEEecCceEEEeccCCCcccHHHHHHHHHHHH
Q 040896 100 QNNPKHETRTVDEQGNEVVHFQPAQEFLPQIQEMIQVLEEKIKTIKGATVEDNKFCISVHFRRVDEDDINTLQEMVNSIV 179 (288)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 179 (288)
.|.. .... .+.................... .........+. .+. +.+.+++
T Consensus 75 -~~~~----------------~~~~---~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~-------~~~~~~~ 125 (225)
T TIGR01482 75 -IFLA----------------YLEE---EWFLDIVIAKTFPFSRLKVQYP-RRASLVKMRYG-IDV-------DTVREII 125 (225)
T ss_pred -EEec----------------ccCH---HHHHHHHHhcccchhhhccccc-cccceEEEeec-CCH-------HHHHHHH
Confidence 1110 0111 1111110000000000000000 00000011111 111 1223333
Q ss_pred HhCC-CeEEeCCceEEEEeCCCCCCHHHHHHHHHHhcCCCCCCCceeEEEcCCcccHHHHHHHHhcCCceEEEEecCCCC
Q 040896 180 EAYP-NFRISGGKKVMEIRPCIDWDKGRALEYLLDTFGFNNASDFLPLYIGDDKTDEDAFKVIRHMGRGYPIIVSSVPRE 258 (288)
Q Consensus 180 ~~~~-~~~~~~~~~~ieI~~~~~~sKg~al~~l~~~~~~~~~~~~~vv~~GDs~ND~~Ml~~~~~~~~g~~v~v~na~~~ 258 (288)
+.+. .+.+.++..++||+|+ ++|||.|+++++++++++.+ ++++|||+.||++||+.+ |++|+|+||.++
T Consensus 126 ~~~~~~~~~~~~~~~~ei~~~-~~~K~~~i~~l~~~~~i~~~---~~i~~GD~~NDi~m~~~a-----g~~vam~Na~~~ 196 (225)
T TIGR01482 126 KELGLNLVAVDSGFDIHILPQ-GVNKGVAVKKLKEKLGIKPG---ETLVCGDSENDIDLFEVP-----GFGVAVANAQPE 196 (225)
T ss_pred HhcCceEEEecCCcEEEEeeC-CCCHHHHHHHHHHHhCCCHH---HEEEECCCHhhHHHHHhc-----CceEEcCChhHH
Confidence 4332 1333355679999999 99999999999999999987 999999999999999999 899999999774
Q ss_pred --ccceEEeC--ChhH----HHHHHHHH
Q 040896 259 --TKALYSLR--DPDE----VMSFLRRL 278 (288)
Q Consensus 259 --~~A~~~~~--~~~~----v~~~l~~~ 278 (288)
.+|++|+. +.+| |+++|+++
T Consensus 197 ~k~~A~~vt~~~~~~G~~~~v~~~l~~~ 224 (225)
T TIGR01482 197 LKEWADYVTESPYGEGGAEAIGEILQAI 224 (225)
T ss_pred HHHhcCeecCCCCCCcHHHHHHHHHHhh
Confidence 68999986 4668 77777664
No 22
>PLN03064 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=99.97 E-value=1.8e-28 Score=241.69 Aligned_cols=217 Identities=13% Similarity=0.172 Sum_probs=168.5
Q ss_pred hhhHHHHHHhh-cCCcEEEEEecCCccccCcCCCC---------CCCCCHHHHHHHHHHhhc--CCEEEEcCCChhhHhh
Q 040896 7 LDTFDRMVAAA-KGKKIVVFLDYDGTLSPIVEDPD---------KAFMSDTMRMAVHEVAHF--FPTAIVSGRCLDKVSR 74 (288)
Q Consensus 7 ~~~~~~~~~~~-~~~~~li~~DlDGTL~~~~~~~~---------~~~i~~~~~~aL~~L~~~--~~v~i~TGR~~~~l~~ 74 (288)
.++.+.++..+ .+++++||+|+||||++...+|. ...++++++++|++|.+. +.|+|+|||+...+..
T Consensus 576 ~l~~~~~~~~y~~a~~RLlfLDyDGTLap~~~~P~~~~~~~~~~~a~p~p~l~~~L~~L~~dp~n~VaIVSGR~~~~Le~ 655 (934)
T PLN03064 576 QLPPEDAIQRYLQSNNRLLILGFNATLTEPVDTPGRRGDQIKEMELRLHPELKEPLRALCSDPKTTIVVLSGSDRSVLDE 655 (934)
T ss_pred CCCHHHHHHHHHhccceEEEEecCceeccCCCCcccccccccccccCCCHHHHHHHHHHHhCCCCeEEEEeCCCHHHHHH
Confidence 35778888887 66889999999999999766665 556889999999999998 4899999999999999
Q ss_pred hcCCCCeEEEccCceeEeCCCCCcccCCCCCcccccccCCCceeccCCCccchhHHHHHHHHHHHHhhccCCeEEEecCc
Q 040896 75 FVQLKNVVYAGSHGMDISTPAGSLKQNNPKHETRTVDEQGNEVVHFQPAQEFLPQIQEMIQVLEEKIKTIKGATVEDNKF 154 (288)
Q Consensus 75 ~~~~~~~~~i~~nGa~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~ 154 (288)
+++..+++++|+||+++..+++. |... .....+ ..|.+.+...++.+.+++||+++|.+.+
T Consensus 656 ~fg~~~L~LaAEHG~~~R~~~~~----w~~~--------------~~~~~~-~~W~~~v~~ile~~~eRtPGS~IE~K~~ 716 (934)
T PLN03064 656 NFGEFDMWLAAENGMFLRHTKGE----WMTT--------------MPEHLN-MDWVDSVKHVFEYFTERTPRSHFETRET 716 (934)
T ss_pred HhCCCCceEEeeCCeEEecCCCc----ceec--------------cccccc-hHHHHHHHHHHHHHHhcCCCcEEEEcCc
Confidence 99866799999999998876554 3210 001101 2578888888888899999999999999
Q ss_pred eEEEeccCCCcccHHHHHHHHHHHH-Hh---CCCeEEeCCceEEEEeCCCCCCHHHHHHHHHHhcCCCC---CCCceeEE
Q 040896 155 CISVHFRRVDEDDINTLQEMVNSIV-EA---YPNFRISGGKKVMEIRPCIDWDKGRALEYLLDTFGFNN---ASDFLPLY 227 (288)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~l~~~~-~~---~~~~~~~~~~~~ieI~~~~~~sKg~al~~l~~~~~~~~---~~~~~vv~ 227 (288)
++.|||+.++++....+...+...+ .. .+++.+..|+..+||.|. ++|||.|++.|++++.-+. ...|.|+|
T Consensus 717 SLawHYR~ADpe~g~~qA~el~~~L~~~~~~~~~v~V~~Gk~VVEVrP~-gvnKG~Av~~ll~~~~~~~~~~~~~DFvlc 795 (934)
T PLN03064 717 SLVWNYKYADVEFGRLQARDMLQHLWTGPISNAAVDVVQGSRSVEVRPV-GVTKGAAIDRILGEIVHSKSMTTPIDYVLC 795 (934)
T ss_pred EEEEEecCCChhhHHHHHHHHHHHHHhhhccCCCcEEEeCCeEEEEEcC-CCCHHHHHHHHHHhhhhccccCCCCCEEEE
Confidence 9999999987664332222222222 21 235888999999999999 9999999999999763111 11349999
Q ss_pred EcCCcc-cHHHHHHHHh
Q 040896 228 IGDDKT-DEDAFKVIRH 243 (288)
Q Consensus 228 ~GDs~N-D~~Ml~~~~~ 243 (288)
+||+.. |++||+++..
T Consensus 796 ~GDd~~~DEdmF~~l~~ 812 (934)
T PLN03064 796 IGHFLGKDEDIYTFFEP 812 (934)
T ss_pred eCCCCCCcHHHHHHHhc
Confidence 999875 9999999853
No 23
>TIGR01486 HAD-SF-IIB-MPGP mannosyl-3-phosphoglycerate phosphatase family. This small group of proteins is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. Several members of this family from thermophiles (and from Dehalococcoides ethenogenes) are now known to act as mannosyl-3-phosphoglycerate (MPG) phosphatase. In these cases, the enzyme acts after MPG synthase to make the compatible solute mannosylglycerate. We propose that other mesophilic members of this family do not act as mannosyl-3-phosphoglycerate phosphatase. A member of this family is found in Escherichia coli, which appears to lack MPG synthase. Mannosylglycerate is imported in E. coli by phosphoenolpyruvate-dependent transporter (PubMed:14645248), but it appears the phosphorylation is not on the glycerate moiety, that the phosphorylated import is degraded by an alpha-mannosidase from an adjacent gene, and that E. coli would have no pathway to obta
Probab=99.97 E-value=3.8e-29 Score=218.06 Aligned_cols=217 Identities=15% Similarity=0.236 Sum_probs=140.5
Q ss_pred EEEEecCCccccCcCCCCCCCCCHHHHHHHHHHhhcC-CEEEEcCCChhhHhhhc---CCCCeEEEccCceeEeCCCCCc
Q 040896 23 VVFLDYDGTLSPIVEDPDKAFMSDTMRMAVHEVAHFF-PTAIVSGRCLDKVSRFV---QLKNVVYAGSHGMDISTPAGSL 98 (288)
Q Consensus 23 li~~DlDGTL~~~~~~~~~~~i~~~~~~aL~~L~~~~-~v~i~TGR~~~~l~~~~---~~~~~~~i~~nGa~i~~~~~~~ 98 (288)
+|++||||||++. +..+.+.++++|++|++.+ .|++||||++..+.+++ +++ .++||+||++|+..++..
T Consensus 1 li~~DlDGTll~~-----~~~~~~~~~~~i~~l~~~g~~~~~~TgR~~~~~~~~~~~~~~~-~~~I~~NGa~i~~~~~~~ 74 (256)
T TIGR01486 1 WIFTDLDGTLLDP-----HGYDWGPAKEVLERLQELGIPVIPCTSKTAAEVEYLRKELGLE-DPFIVENGGAIYGPRGWF 74 (256)
T ss_pred CEEEcCCCCCcCC-----CCcCchHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCC-CcEEEcCCeEEEeCCCcc
Confidence 5899999999983 3424446999999999985 99999999999988875 443 579999999999865432
Q ss_pred ccC--CCCCcccccccCCCceeccCCCccchhHHHHHHHHHHHHhh-cc--------------CCeE------EEecCce
Q 040896 99 KQN--NPKHETRTVDEQGNEVVHFQPAQEFLPQIQEMIQVLEEKIK-TI--------------KGAT------VEDNKFC 155 (288)
Q Consensus 99 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--------------~~~~------~e~~~~~ 155 (288)
... |. .. ..... ..+..+.+.+..... .. .+.. .......
T Consensus 75 ~~~~~~~--~~------------~~i~~---~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (256)
T TIGR01486 75 TEPEYPV--IA------------LGIPY---EKIRARLEELSEELGFKFRGLGDLTDAEIAELTGLSRELAALAQRREYS 137 (256)
T ss_pred cCCCeEE--EE------------cCCCH---HHHHHHHHHHHHHhCCCccchhhCCHHHHHHHhCcCHHHHHHHhhCccC
Confidence 100 00 00 00000 111112211110000 00 0000 0000000
Q ss_pred EEEeccCCCcccHHHHHHHHHHHHHhCCCeEEeCCceEEEEeCCCCCCHHHHHHHHHHhcCCC--CCCCceeEEEcCCcc
Q 040896 156 ISVHFRRVDEDDINTLQEMVNSIVEAYPNFRISGGKKVMEIRPCIDWDKGRALEYLLDTFGFN--NASDFLPLYIGDDKT 233 (288)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ieI~~~~~~sKg~al~~l~~~~~~~--~~~~~~vv~~GDs~N 233 (288)
..+.. + .+..+.+.+.++.. ++.+..+..++||+|+ +++||.|+++|+++++++ .+ ++++||||.|
T Consensus 138 ~~~~~---~----~~~~~~~~~~~~~~-~~~~~~s~~~~ei~~~-~~~Kg~ai~~l~~~~~i~~~~~---~~~a~GD~~N 205 (256)
T TIGR01486 138 ETILW---S----EERRERFTEALVEL-GLEVTHGNRFYHVLGA-GSDKGKAANALKQFYNQPGGAI---KVVGLGDSPN 205 (256)
T ss_pred Cceec---C----hHHHHHHHHHHHHc-CCEEEeCCceEEEecC-CCCHHHHHHHHHHHHhhcCCCc---eEEEEcCCHh
Confidence 01111 1 12233444444443 4665555579999999 999999999999999998 76 9999999999
Q ss_pred cHHHHHHHHhcCCceEEEEecCCC-----Ccc--c-eEEeC--ChhHHHHHHHHHH
Q 040896 234 DEDAFKVIRHMGRGYPIIVSSVPR-----ETK--A-LYSLR--DPDEVMSFLRRLA 279 (288)
Q Consensus 234 D~~Ml~~~~~~~~g~~v~v~na~~-----~~~--A-~~~~~--~~~~v~~~l~~~~ 279 (288)
|++||+.+ |++|+|+||.+ +.. | ++++. +.+||++.|++++
T Consensus 206 D~~Ml~~a-----g~~vam~Na~~~~~~lk~~~~a~~~vt~~~~~dGva~~l~~~~ 256 (256)
T TIGR01486 206 DLPLLEVV-----DLAVVVPGPNGPNVSLKPGDPGSFLLTPAPGPEGWREALEHLL 256 (256)
T ss_pred hHHHHHHC-----CEEEEeCCCCCCccccCccCCCcEEEcCCCCcHHHHHHHHHhC
Confidence 99999999 89999999973 234 4 48875 4789999998874
No 24
>TIGR01485 SPP_plant-cyano sucrose-6F-phosphate phosphohydrolase. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.
Probab=99.97 E-value=9.8e-30 Score=220.86 Aligned_cols=227 Identities=15% Similarity=0.213 Sum_probs=151.1
Q ss_pred cEEEEEecCCccccCcCCCCCCCCCHHHHHHHHHHhhcC-CEEEEcCCChhhHhhh---cCCC-CeEEEccCceeEeCCC
Q 040896 21 KIVVFLDYDGTLSPIVEDPDKAFMSDTMRMAVHEVAHFF-PTAIVSGRCLDKVSRF---VQLK-NVVYAGSHGMDISTPA 95 (288)
Q Consensus 21 ~~li~~DlDGTL~~~~~~~~~~~i~~~~~~aL~~L~~~~-~v~i~TGR~~~~l~~~---~~~~-~~~~i~~nGa~i~~~~ 95 (288)
+.+|++||||||+++.. .+..++++++++++++++++ .|++||||++..+.++ ++.+ +..+|++||+.|+.++
T Consensus 1 ~~li~tDlDGTLl~~~~--~~~~~~~~~~~~i~~~~~~gi~fv~aTGR~~~~~~~~~~~~~~~~p~~~I~~NGa~I~~~~ 78 (249)
T TIGR01485 1 RLLLVSDLDNTLVDHTD--GDNQALLRLNALLEDHRGEDSLLVYSTGRSPHSYKELQKQKPLLTPDIWVTSVGSEIYYGG 78 (249)
T ss_pred CeEEEEcCCCcCcCCCC--CChHHHHHHHHHHHHhhccCceEEEEcCCCHHHHHHHHhcCCCCCCCEEEEcCCceEEeCC
Confidence 46899999999998542 34678999999999999986 9999999999999987 3432 2358999999998754
Q ss_pred CCcc-cCCCCCcccccccCCCceeccCCCccchhHHHHHHHHHHHHhhccCCeEEEecCceEEEeccCCCcccHHHHHHH
Q 040896 96 GSLK-QNNPKHETRTVDEQGNEVVHFQPAQEFLPQIQEMIQVLEEKIKTIKGATVEDNKFCISVHFRRVDEDDINTLQEM 174 (288)
Q Consensus 96 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 174 (288)
.... ..|.. . ....+. ...+......+....+......+.+.+.+.... .......+.
T Consensus 79 ~~~~~~~~~~---------------~-~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~k~~~~~~~---~~~~~~~~~ 137 (249)
T TIGR01485 79 AEVPDQHWAE---------------Y-LSEKWQ--RDIVVAITDKFEELKPQPDLEQRPHKVSFFLDP---EAAPEVIKQ 137 (249)
T ss_pred CCcCCHHHHH---------------H-HhcccC--HHHHHHHHhcCcccccCCccccCCeeEEEEech---hhhhHHHHH
Confidence 2211 11110 0 000111 111222211111111222223334455554321 112233455
Q ss_pred HHHHHHhCC-CeEE-eCCceEEEEeCCCCCCHHHHHHHHHHhcCCCCCCCceeEEEcCCcccHHHHHHHHhcCCceEEEE
Q 040896 175 VNSIVEAYP-NFRI-SGGKKVMEIRPCIDWDKGRALEYLLDTFGFNNASDFLPLYIGDDKTDEDAFKVIRHMGRGYPIIV 252 (288)
Q Consensus 175 l~~~~~~~~-~~~~-~~~~~~ieI~~~~~~sKg~al~~l~~~~~~~~~~~~~vv~~GDs~ND~~Ml~~~~~~~~g~~v~v 252 (288)
+.+.+.... .+.+ .++..++||+|+ ++|||.|+++|+++++++.+ ++++|||+.||++||+.+. +++|+|
T Consensus 138 l~~~l~~~~~~~~~~~~~~~~ldi~~~-~~~K~~al~~l~~~~~i~~~---~~i~~GD~~ND~~ml~~~~----~~~va~ 209 (249)
T TIGR01485 138 LTEMLKETGLDVKLIYSSGKDLDILPQ-GSGKGQALQYLLQKLAMEPS---QTLVCGDSGNDIELFEIGS----VRGVIV 209 (249)
T ss_pred HHHHHHhcCCCEEEEEECCceEEEEeC-CCChHHHHHHHHHHcCCCcc---CEEEEECChhHHHHHHccC----CcEEEE
Confidence 565555442 2443 567789999999 99999999999999999887 9999999999999999842 689999
Q ss_pred ecCCCC--ccc-------eEEeC--ChhHHHHHHHHH
Q 040896 253 SSVPRE--TKA-------LYSLR--DPDEVMSFLRRL 278 (288)
Q Consensus 253 ~na~~~--~~A-------~~~~~--~~~~v~~~l~~~ 278 (288)
+||.++ ..+ .|++. .++|+++.|+++
T Consensus 210 ~na~~~~k~~~~~~~~~~~~~~~~~~~~Gi~e~l~~~ 246 (249)
T TIGR01485 210 SNAQEELLQWYDENAKDKIYHASERCAGGIIEAIAHF 246 (249)
T ss_pred CCCHHHHHHHHHhcccCcEEEecCCCcHHHHHHHHHc
Confidence 999764 222 26665 478999999875
No 25
>TIGR00099 Cof-subfamily Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily. The members of this subfamily are restricted almost exclusively to bacteria (one sequences from S. pombe scores above trusted, while another is between trusted and noise). It is notable that no archaea are found in this group, the closest relations to the archaea found here being two Deinococcus sequences.
Probab=99.97 E-value=2.1e-29 Score=219.67 Aligned_cols=212 Identities=21% Similarity=0.308 Sum_probs=140.0
Q ss_pred EEEEecCCccccCcCCCCCCCCCHHHHHHHHHHhhcC-CEEEEcCCChhhHhhhcC-CC-CeEEEccCceeEeCCCCCcc
Q 040896 23 VVFLDYDGTLSPIVEDPDKAFMSDTMRMAVHEVAHFF-PTAIVSGRCLDKVSRFVQ-LK-NVVYAGSHGMDISTPAGSLK 99 (288)
Q Consensus 23 li~~DlDGTL~~~~~~~~~~~i~~~~~~aL~~L~~~~-~v~i~TGR~~~~l~~~~~-~~-~~~~i~~nGa~i~~~~~~~~ 99 (288)
+|++||||||++ .++.++++++++|++|++++ .|++||||++..+.+++. +. ..++|++||+.|+..++...
T Consensus 1 li~~DlDGTLl~-----~~~~i~~~~~~~i~~l~~~G~~~~iaTGR~~~~~~~~~~~~~~~~~~I~~NGa~i~~~~~~~i 75 (256)
T TIGR00099 1 LIFIDLDGTLLN-----DDHTISPSTKEALAKLREKGIKVVLATGRPYKEVKNILKELGLDTPFITANGAAVIDDQGEIL 75 (256)
T ss_pred CEEEeCCCCCCC-----CCCccCHHHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCCCCCEEEcCCcEEECCCCCEE
Confidence 589999999998 45679999999999999995 999999999999888753 22 24799999999997644322
Q ss_pred cCCCCCcccccccCCCceeccCCCccchhHHHHHHHHHHHHh---------------------------hccCCeEEE--
Q 040896 100 QNNPKHETRTVDEQGNEVVHFQPAQEFLPQIQEMIQVLEEKI---------------------------KTIKGATVE-- 150 (288)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------~~~~~~~~e-- 150 (288)
.. .. ... ..+..+.+.+.... ...+.....
T Consensus 76 ~~--~~----------------i~~---~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (256)
T TIGR00099 76 YK--KP----------------LDL---DLVEEILNFLKKHGLDVILYGDDSIYASKNDPEYFTIFKKFLGEPKLEVVDI 134 (256)
T ss_pred ee--cC----------------CCH---HHHHHHHHHHHHcCcEEEEEeCCeEEecCCCcchhHHHHHhccCCcceeccc
Confidence 10 00 000 01111111111100 000000000
Q ss_pred ----ecCceEEEeccCCCcccHHHHHHHHHHHHH--hC-CCeEE-eCCceEEEEeCCCCCCHHHHHHHHHHhcCCCCCCC
Q 040896 151 ----DNKFCISVHFRRVDEDDINTLQEMVNSIVE--AY-PNFRI-SGGKKVMEIRPCIDWDKGRALEYLLDTFGFNNASD 222 (288)
Q Consensus 151 ----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~-~~~~~-~~~~~~ieI~~~~~~sKg~al~~l~~~~~~~~~~~ 222 (288)
.........+. +. ...+.+.+.+. .+ ..+.+ .++..++||+|+ ++|||.|+++++++++++.+
T Consensus 135 ~~~~~~~~~~~~~~~--~~----~~~~~~~~~~~~~~~~~~~~~~~s~~~~leI~~~-~~~K~~~i~~~~~~~~~~~~-- 205 (256)
T TIGR00099 135 QYLPDDILKILLLFL--DP----EDLDLLIEALNKLELEENVSVVSSGPYSIEITAK-GVSKGSALQSLAEALGISLE-- 205 (256)
T ss_pred hhhhcccceEEEEEC--CH----HHHHHHHHHhhhhhhcCCEEEEEecCceEEecCC-CCChHHHHHHHHHHcCCCHH--
Confidence 00011011011 11 11223333332 12 23554 566789999999 99999999999999999887
Q ss_pred ceeEEEcCCcccHHHHHHHHhcCCceEEEEecCCCC--ccceEEeC--ChhHHHHHH
Q 040896 223 FLPLYIGDDKTDEDAFKVIRHMGRGYPIIVSSVPRE--TKALYSLR--DPDEVMSFL 275 (288)
Q Consensus 223 ~~vv~~GDs~ND~~Ml~~~~~~~~g~~v~v~na~~~--~~A~~~~~--~~~~v~~~l 275 (288)
++++||||.||++||+.+ |++++|+|+.+. ..|++++. +.+||+++|
T Consensus 206 -~~~~~GD~~nD~~m~~~~-----~~~~a~~na~~~~k~~a~~~~~~n~~dGV~~~l 256 (256)
T TIGR00099 206 -DVIAFGDGMNDIEMLEAA-----GYGVAMGNADEELKALADYVTDSNNEDGVALAL 256 (256)
T ss_pred -HEEEeCCcHHhHHHHHhC-----CceeEecCchHHHHHhCCEEecCCCCcchhhhC
Confidence 999999999999999999 899999999763 67999986 467888764
No 26
>PRK00192 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=99.96 E-value=2.6e-28 Score=214.70 Aligned_cols=232 Identities=15% Similarity=0.261 Sum_probs=146.7
Q ss_pred cEEEEEecCCccccCcCCCCCCCCCHHHHHHHHHHhhcC-CEEEEcCCChhhHhhhc---CCCCeEEEccCceeEeCCCC
Q 040896 21 KIVVFLDYDGTLSPIVEDPDKAFMSDTMRMAVHEVAHFF-PTAIVSGRCLDKVSRFV---QLKNVVYAGSHGMDISTPAG 96 (288)
Q Consensus 21 ~~li~~DlDGTL~~~~~~~~~~~i~~~~~~aL~~L~~~~-~v~i~TGR~~~~l~~~~---~~~~~~~i~~nGa~i~~~~~ 96 (288)
.|+||+||||||++ ++..+++.++++|++|++.+ .|++||||+...+...+ ++. .++|++||+.|+.+++
T Consensus 4 ~kli~~DlDGTLl~-----~~~~~~~~~~~ai~~l~~~Gi~~~iaTgR~~~~~~~~~~~l~l~-~~~i~~nGa~i~~~~~ 77 (273)
T PRK00192 4 KLLVFTDLDGTLLD-----HHTYSYEPAKPALKALKEKGIPVIPCTSKTAAEVEVLRKELGLE-DPFIVENGAAIYIPKN 77 (273)
T ss_pred ceEEEEcCcccCcC-----CCCcCcHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHcCCC-CCEEEEcCcEEEeccc
Confidence 68999999999998 34568899999999999985 89999999999988765 443 4699999999987543
Q ss_pred CcccCCCCCcccccccCCCceeccCCCccchhHHHHHHHHHHHHhh------------------ccCCeEEE---ecCce
Q 040896 97 SLKQNNPKHETRTVDEQGNEVVHFQPAQEFLPQIQEMIQVLEEKIK------------------TIKGATVE---DNKFC 155 (288)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~e---~~~~~ 155 (288)
..... . .........++...+.. ......+...+..... ..+....+ .....
T Consensus 78 ~~~~~---~--~~~~~~~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (273)
T PRK00192 78 YFPFQ---P--DGERLKGDYWVIELGPP--YEELREILDEISDELGYPLKGFGDLSAEEVAELTGLSGESARLAKDREFS 150 (273)
T ss_pred ccccC---C--ccccccCCceEEEcCCC--HHHHHHHHHHHHHHhCCCeeehhhCCHHHHHHHhCcCHHHHHHHHhcccC
Confidence 21000 0 00000000011000100 0112222221111000 00000000 00000
Q ss_pred EEEeccCCCcccHHHHHHHHHHHHHhCCCeEEeCCceEEEEeCCCCCCHHHHHHHHHHhcCCCC-CCCceeEEEcCCccc
Q 040896 156 ISVHFRRVDEDDINTLQEMVNSIVEAYPNFRISGGKKVMEIRPCIDWDKGRALEYLLDTFGFNN-ASDFLPLYIGDDKTD 234 (288)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ieI~~~~~~sKg~al~~l~~~~~~~~-~~~~~vv~~GDs~ND 234 (288)
..+.+.. + ....+.+.+.++.+ ++.+.+++.++||+|+ + +||.|+++++++++++. + ++++|||+.||
T Consensus 151 ~~~~~~~-~----~~~~~~~~~~l~~~-~~~~~~~~~~~ei~~~-~-~Kg~al~~l~~~~~i~~~~---~v~~~GDs~ND 219 (273)
T PRK00192 151 EPFLWNG-S----EAAKERFEEALKRL-GLKVTRGGRFLHLLGG-G-DKGKAVRWLKELYRRQDGV---ETIALGDSPND 219 (273)
T ss_pred CceeecC-c----hHHHHHHHHHHHHc-CCEEEECCeEEEEeCC-C-CHHHHHHHHHHHHhccCCc---eEEEEcCChhh
Confidence 0010000 1 12334444555544 4665556789999999 9 99999999999999998 8 99999999999
Q ss_pred HHHHHHHHhcCCceEEEEecCCCC------ccc-eEEe--C--ChhHHHHHHHHHHHH
Q 040896 235 EDAFKVIRHMGRGYPIIVSSVPRE------TKA-LYSL--R--DPDEVMSFLRRLARW 281 (288)
Q Consensus 235 ~~Ml~~~~~~~~g~~v~v~na~~~------~~A-~~~~--~--~~~~v~~~l~~~~~~ 281 (288)
++||+.+ |++++|+||.+. ..| ++++ . +.+||++.|+++++.
T Consensus 220 i~m~~~a-----g~~vam~NA~~~~k~~~~~~a~~~v~~~~~~~~~Gv~~~l~~~~~~ 272 (273)
T PRK00192 220 LPMLEAA-----DIAVVVPGPDGPNPPLLPGIADGEFILASAPGPEGWAEAINKLLSK 272 (273)
T ss_pred HHHHHhC-----CeeEEeCCCCCCCcccCccccCCceEEecCCCcHHHHHHHHHHHhh
Confidence 9999999 899999999764 334 5666 3 478999999998763
No 27
>TIGR01484 HAD-SF-IIB HAD-superfamily hydrolase, subfamily IIB. The IIB subfamily consists of Trehalose-6-phosphatase (TIGR00685), plant and cyanobacterial Sucrose-phosphatase and a closely related group of bacterial and archaeal sequences, eukaryotic phosphomannomutase (pfam03332), a large subfamily ("Cof-like hydrolases", TIGR00099) containing many closely related bacterial sequences, a hypothetical equivalog containing the E. coli YedP protein, as well as two small clusters containing sequences whose relationship to the other groups is unclear.
Probab=99.96 E-value=1.6e-29 Score=212.95 Aligned_cols=197 Identities=23% Similarity=0.336 Sum_probs=137.0
Q ss_pred EEEEecCCccccCcCCCCCCCCCHHHHHHHHHHhhcC-CEEEEcCCChhhHhhhcCCCCeEEEccCceeEeCCCCCcccC
Q 040896 23 VVFLDYDGTLSPIVEDPDKAFMSDTMRMAVHEVAHFF-PTAIVSGRCLDKVSRFVQLKNVVYAGSHGMDISTPAGSLKQN 101 (288)
Q Consensus 23 li~~DlDGTL~~~~~~~~~~~i~~~~~~aL~~L~~~~-~v~i~TGR~~~~l~~~~~~~~~~~i~~nGa~i~~~~~~~~~~ 101 (288)
+|++|+||||+++ ....++++++++|++|++++ .|+++|||+...+.++++..+.++|++||+.|+.+++.....
T Consensus 1 li~~D~DgTL~~~----~~~~~~~~~~~~l~~l~~~g~~~~i~TGR~~~~~~~~~~~~~~~~i~~nGa~i~~~~~~~~~~ 76 (204)
T TIGR01484 1 LLFFDLDGTLLDP----NAHELSPETIEALERLREAGVKVVLVTGRSLAEIKELLKQLPLPLIAENGALIFYPGEILYIE 76 (204)
T ss_pred CEEEeCcCCCcCC----CCCcCCHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHhCCCCEEECCCcEEEECCEEEEEc
Confidence 5899999999983 12679999999999999995 999999999999999875334789999999998754432110
Q ss_pred CCCCcccccccCCCceeccCCCccchhHH---HHHHHHHHHHhhccCCeEEEecCceEEEeccCC--CcccHHHHHHHHH
Q 040896 102 NPKHETRTVDEQGNEVVHFQPAQEFLPQI---QEMIQVLEEKIKTIKGATVEDNKFCISVHFRRV--DEDDINTLQEMVN 176 (288)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~--~~~~~~~~~~~l~ 176 (288)
+...+..+. +.+...+..+....++...+.+...+.+++... .......+.+.++
T Consensus 77 --------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (204)
T TIGR01484 77 --------------------PSDVFEEILGIKEEIGAELKSLSEHYVGTFIEDKAIAVAIHYVGAELGQELDSKMRERLE 136 (204)
T ss_pred --------------------ccccHHHHHHhhhhcCceeeeeccccccceeecccceeeEEEeccchhhHHHHHHHHHHH
Confidence 000001111 111111111122344555666777777777653 1111112222222
Q ss_pred HHHHhCCCeEEe-CCceEEEEeCCCCCCHHHHHHHHHHhcCCCCCCCceeEEEcCCcccHHHHHHHHhcCCceEEEE
Q 040896 177 SIVEAYPNFRIS-GGKKVMEIRPCIDWDKGRALEYLLDTFGFNNASDFLPLYIGDDKTDEDAFKVIRHMGRGYPIIV 252 (288)
Q Consensus 177 ~~~~~~~~~~~~-~~~~~ieI~~~~~~sKg~al~~l~~~~~~~~~~~~~vv~~GDs~ND~~Ml~~~~~~~~g~~v~v 252 (288)
......+++.+. +++.++||+|+ +++|+.|++.++++++++.+ ++++|||+.||++||+.+ |++|+|
T Consensus 137 ~~~~~~~~~~~~~s~~~~~ev~p~-~~~K~~~~~~~~~~~~~~~~---~~~~~GD~~nD~~~~~~~-----~~~vam 204 (204)
T TIGR01484 137 KIGRNDLELEAIYVGKTDLEVLPA-GVDKGSALQALLKELNGKRD---EILAFGDSGNDEEMFEVA-----GLAVAV 204 (204)
T ss_pred hhccccCcEEEEEecCCEEEEecC-CCChHHHHHHHHHHhCCCHH---HEEEEcCCHHHHHHHHHc-----CCceEC
Confidence 221112357776 68899999999 99999999999999998877 999999999999999999 889886
No 28
>TIGR02471 sucr_syn_bact_C sucrose phosphate synthase, sucrose phosphatase-like domain, bacterial. Sucrose phosphate synthase (SPS) and sucrose phosphate phosphatase (SPP) are the last two enzymes of sucrose biosynthesis. In cyanobacteria and plants, the C-terminal region of most or all versions of SPS has a domain homologous to the known SPP. This domain may serve a binding or regulatory rather than catalytic function. Sequences in this family are bacterial C-terminal regions found in all but two of the putative bacterial sucrose phosphate synthases described by TIGR02472.
Probab=99.96 E-value=1.7e-28 Score=211.44 Aligned_cols=216 Identities=16% Similarity=0.194 Sum_probs=141.3
Q ss_pred EEEEecCCccccCcCCCCCCCCCHHHHHHHHHHhhcC-CEEEEcCCChhhHhhhcC---CC-CeEEEccCceeEeCCCCC
Q 040896 23 VVFLDYDGTLSPIVEDPDKAFMSDTMRMAVHEVAHFF-PTAIVSGRCLDKVSRFVQ---LK-NVVYAGSHGMDISTPAGS 97 (288)
Q Consensus 23 li~~DlDGTL~~~~~~~~~~~i~~~~~~aL~~L~~~~-~v~i~TGR~~~~l~~~~~---~~-~~~~i~~nGa~i~~~~~~ 97 (288)
+|++||||||++ ++..+++.+ ++++ +++++ .+++||||++..+..++. +. ..++|++||+.|+.+...
T Consensus 1 li~~DlDgTLl~-----~~~~~~~~~-~~~~-~~~~gi~~viaTGR~~~~v~~~~~~l~l~~~~~~I~~nGa~i~~~~~~ 73 (236)
T TIGR02471 1 LIITDLDNTLLG-----DDEGLASFV-ELLR-GSGDAVGFGIATGRSVESAKSRYAKLNLPSPDVLIARVGTEIYYGPEL 73 (236)
T ss_pred CeEEeccccccC-----CHHHHHHHH-HHHH-hcCCCceEEEEeCCCHHHHHHHHHhCCCCCCCEEEECCCceEEeCCCC
Confidence 589999999998 445677766 7776 56664 899999999999999863 32 245999999998764321
Q ss_pred c-ccCCCCCcccccccCCCceeccCCCccchhHHHHHHHHHHHHhhccCCeEEEecC--ceEEEeccCCCcccHHHHHHH
Q 040896 98 L-KQNNPKHETRTVDEQGNEVVHFQPAQEFLPQIQEMIQVLEEKIKTIKGATVEDNK--FCISVHFRRVDEDDINTLQEM 174 (288)
Q Consensus 98 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~--~~~~~~~~~~~~~~~~~~~~~ 174 (288)
. ...|.. . ....+. ..++.+ +....++...+... ....+++...+... ...+.
T Consensus 74 ~~~~~~~~---------------~-~~~~~~--~~~~~~----~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~~~~ 129 (236)
T TIGR02471 74 QPDRFWQK---------------H-IDHDWR--RQAVVE----ALADIPGLTLQDDQEQGPFKISYLLDPEGE--PILPQ 129 (236)
T ss_pred CCChhHHH---------------H-HhcCCC--HHHHHH----HHhcCCCcEeCChhcCCCeeEEEEECcccc--hHHHH
Confidence 1 101100 0 000000 111222 22334554333222 11223333212111 11233
Q ss_pred HHHHHHhCC-CeEE-eCCceEEEEeCCCCCCHHHHHHHHHHhcCCCCCCCceeEEEcCCcccHHHHHHHHhcCCceEEEE
Q 040896 175 VNSIVEAYP-NFRI-SGGKKVMEIRPCIDWDKGRALEYLLDTFGFNNASDFLPLYIGDDKTDEDAFKVIRHMGRGYPIIV 252 (288)
Q Consensus 175 l~~~~~~~~-~~~~-~~~~~~ieI~~~~~~sKg~al~~l~~~~~~~~~~~~~vv~~GDs~ND~~Ml~~~~~~~~g~~v~v 252 (288)
+.+.++... .+.+ .++..++||+|+ ++|||.|+++|+++++++.+ ++++|||+.||++||+.+ |+||+|
T Consensus 130 ~~~~l~~~~~~~~~~~~~~~~~ei~~~-~~~K~~al~~l~~~~g~~~~---~~i~~GD~~nD~~ml~~~-----~~~iav 200 (236)
T TIGR02471 130 IRQRLRQQSQAAKVILSCGWFLDVLPL-RASKGLALRYLSYRWGLPLE---QILVAGDSGNDEEMLRGL-----TLGVVV 200 (236)
T ss_pred HHHHHHhccCCEEEEEECCceEEEeeC-CCChHHHHHHHHHHhCCCHH---HEEEEcCCccHHHHHcCC-----CcEEEE
Confidence 334444332 2333 456688999999 99999999999999999877 999999999999999998 899999
Q ss_pred ecCCCC--ccce----EEeC--ChhHHHHHHHHH
Q 040896 253 SSVPRE--TKAL----YSLR--DPDEVMSFLRRL 278 (288)
Q Consensus 253 ~na~~~--~~A~----~~~~--~~~~v~~~l~~~ 278 (288)
+|+.++ ..|+ |++. +.+||+++|+++
T Consensus 201 ~na~~~~k~~a~~~~~~v~~~~~~~Gv~~~i~~~ 234 (236)
T TIGR02471 201 GNHDPELEGLRHQQRIYFANNPHAFGILEGINHY 234 (236)
T ss_pred cCCcHHHHHhhcCCcEEEcCCCChhHHHHHHHhh
Confidence 999764 5677 7775 367999999764
No 29
>PLN02382 probable sucrose-phosphatase
Probab=99.95 E-value=2e-27 Score=219.18 Aligned_cols=229 Identities=16% Similarity=0.154 Sum_probs=146.9
Q ss_pred cCCcEEEEEecCCccccCcCCCCCCCCCHHHHHHH-HHHhhcC-CEEEEcCCChhhHhhh---cCC-CCeEEEccCceeE
Q 040896 18 KGKKIVVFLDYDGTLSPIVEDPDKAFMSDTMRMAV-HEVAHFF-PTAIVSGRCLDKVSRF---VQL-KNVVYAGSHGMDI 91 (288)
Q Consensus 18 ~~~~~li~~DlDGTL~~~~~~~~~~~i~~~~~~aL-~~L~~~~-~v~i~TGR~~~~l~~~---~~~-~~~~~i~~nGa~i 91 (288)
.+.+.+|++||||||+++. ++..+++..+.+| +++.+++ .++++|||++..+.++ +++ .+..+|++||+.|
T Consensus 6 ~~~~~lI~sDLDGTLL~~~---~~~~~s~~~~~~l~~~~~~~gi~fv~aTGR~~~~~~~l~~~~~l~~p~~~I~~nGt~I 82 (413)
T PLN02382 6 GSPRLMIVSDLDHTMVDHH---DPENLSLLRFNALWEAEYRHDSLLVFSTGRSPTLYKELRKEKPLLTPDITIMSVGTEI 82 (413)
T ss_pred CCCCEEEEEcCCCcCcCCC---CccchhHHHHHHHHHHhhcCCeeEEEEcCCCHHHHHHHHHhCCCCCCCEEEEcCCcEE
Confidence 3567899999999999842 1336776666766 8888775 8999999997777665 333 2335888899999
Q ss_pred eCCCCCcc-cCCCCCcccccccCCCceeccCCCccchhHHHHHHHHHHHHhhccCCeEEEecCceEEEeccCCCcccHHH
Q 040896 92 STPAGSLK-QNNPKHETRTVDEQGNEVVHFQPAQEFLPQIQEMIQVLEEKIKTIKGATVEDNKFCISVHFRRVDEDDINT 170 (288)
Q Consensus 92 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~ 170 (288)
+..+.... ..|... ....|. ...+.+.+..+.........+++.+.+.+.... .....
T Consensus 83 ~~~~~~~~d~~w~~~----------------l~~~w~--~~~v~~~~~~~~~l~~q~~~~~~~~Ki~~~~~~---~~~~~ 141 (413)
T PLN02382 83 AYGESMVPDHGWVEY----------------LNKKWD--REIVVEETSKFPELKLQPETEQRPHKVSFYVDK---KKAQE 141 (413)
T ss_pred EeCCCCccChhHHHH----------------HhccCC--hhhHHHHHhcCCCcccCCcccCCCeEEEEEech---HHhHH
Confidence 86543211 112110 000111 111222221110001111222334455554332 11223
Q ss_pred HHHHHHHHHHhC-CCeEE-eCCceEEEEeCCCCCCHHHHHHHHHHhc---CCCCCCCceeEEEcCCcccHHHHHHHHhcC
Q 040896 171 LQEMVNSIVEAY-PNFRI-SGGKKVMEIRPCIDWDKGRALEYLLDTF---GFNNASDFLPLYIGDDKTDEDAFKVIRHMG 245 (288)
Q Consensus 171 ~~~~l~~~~~~~-~~~~~-~~~~~~ieI~~~~~~sKg~al~~l~~~~---~~~~~~~~~vv~~GDs~ND~~Ml~~~~~~~ 245 (288)
..+.+.+.+... ..+.+ .+++.++||+|+ ++|||.||++|++++ |++.+ ++++||||.||++||+.+
T Consensus 142 ~~~~l~~~~~~~g~~~~i~~s~~~~ldI~p~-g~sKg~Al~~L~~~~~~~gi~~~---~~iafGDs~NDleMl~~a---- 213 (413)
T PLN02382 142 VIKELSERLEKRGLDVKIIYSGGIDLDVLPQ-GAGKGQALAYLLKKLKAEGKAPV---NTLVCGDSGNDAELFSVP---- 213 (413)
T ss_pred HHHHHHHHHHhcCCcEEEEEECCcEEEEEeC-CCCHHHHHHHHHHHhhhcCCChh---cEEEEeCCHHHHHHHhcC----
Confidence 344454444432 12443 567789999999 999999999999999 88877 999999999999999998
Q ss_pred Cc-eEEEEecCCCC--cc--------ceEEeC---ChhHHHHHHHHHH
Q 040896 246 RG-YPIIVSSVPRE--TK--------ALYSLR---DPDEVMSFLRRLA 279 (288)
Q Consensus 246 ~g-~~v~v~na~~~--~~--------A~~~~~---~~~~v~~~l~~~~ 279 (288)
| +||+|+||.++ .. +++++. ..+|+++.|+++.
T Consensus 214 -g~~gvam~NA~~elk~~a~~~~~~~~~~~~a~~~~~~GI~~al~~f~ 260 (413)
T PLN02382 214 -DVYGVMVSNAQEELLQWYAENAKDNPKIIHATERCAAGIIQAIGHFN 260 (413)
T ss_pred -CCCEEEEcCCcHHHHHHHHhhccCCCcEEEcCCCCccHHHHHHHHhC
Confidence 8 89999999763 22 355543 4789999998875
No 30
>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase-related protein. This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbor-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (TIGR02460). Members of this family are like to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.
Probab=99.95 E-value=4.3e-27 Score=200.63 Aligned_cols=194 Identities=17% Similarity=0.280 Sum_probs=122.7
Q ss_pred EEEEecCCccccCcCCCCCCCCCHHHHHHHHHHhhcC-CEEEEcCCChhhHhhhc---CCCCeEEEccCceeEeCCCCC-
Q 040896 23 VVFLDYDGTLSPIVEDPDKAFMSDTMRMAVHEVAHFF-PTAIVSGRCLDKVSRFV---QLKNVVYAGSHGMDISTPAGS- 97 (288)
Q Consensus 23 li~~DlDGTL~~~~~~~~~~~i~~~~~~aL~~L~~~~-~v~i~TGR~~~~l~~~~---~~~~~~~i~~nGa~i~~~~~~- 97 (288)
+|++||||||++ ++..+++.++++|++|++.+ +|++||||++..+..++ ++...++||+||+.|+.....
T Consensus 1 ~i~~DlDGTLL~-----~~~~~~~~~~~~l~~l~~~gi~~~i~TgR~~~~~~~~~~~l~~~~~~~I~~NGa~i~~~~~~~ 75 (221)
T TIGR02463 1 WVFSDLDGTLLD-----SHSYDWQPAAPWLTRLQEAGIPVILCTSKTAAEVEYLQKALGLTGDPYIAENGAAIHLEELWR 75 (221)
T ss_pred CEEEeCCCCCcC-----CCCCCcHHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCCCCcEEEeCCcEEEcCcccc
Confidence 589999999998 34446666999999999985 99999999999988875 443257999999999875332
Q ss_pred cccCCCCCcccccccCCCceeccCCCccchhHHHHHHHHHHHHhhc----cC-----------CeE------EEecCceE
Q 040896 98 LKQNNPKHETRTVDEQGNEVVHFQPAQEFLPQIQEMIQVLEEKIKT----IK-----------GAT------VEDNKFCI 156 (288)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~-----------~~~------~e~~~~~~ 156 (288)
....|.. ....... .....+.+.+...... .. +.. .+......
T Consensus 76 ~~~~~~~-------------~~~~~~~---~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (221)
T TIGR02463 76 EEPGYPR-------------IILGISY---GIIRLVLETLSEELHFKFTPFDDLSDAEIAELTGLSGSQAALAQDREASV 139 (221)
T ss_pred cCCCceE-------------EecCCCH---HHHHHHHHHHHHHhCCCceehhhCCHHHHHHHhCcCHHHHHHHHhccCCc
Confidence 1100000 0000110 1111111111110000 00 000 00000111
Q ss_pred EEeccCCCcccHHHHHHHHHHHHHhCCCeEEeCCceEEEEeCCCCCCHHHHHHHHHHhcCCCCCCCceeEEEcCCcccHH
Q 040896 157 SVHFRRVDEDDINTLQEMVNSIVEAYPNFRISGGKKVMEIRPCIDWDKGRALEYLLDTFGFNNASDFLPLYIGDDKTDED 236 (288)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ieI~~~~~~sKg~al~~l~~~~~~~~~~~~~vv~~GDs~ND~~ 236 (288)
.+... .+ ....+.+.+.+... ++.+.+++.++||+|+ +++||.|++++++++|++.+ ++++|||+.||++
T Consensus 140 ~~~~~-~~----~~~~~~~~~~l~~~-~~~~~~~~~~~ei~~~-~~~Kg~al~~l~~~lgi~~~---~vi~~GD~~NDi~ 209 (221)
T TIGR02463 140 PLLWR-DS----DSRMPRFTALLADL-GLAIVQGNRFSHVLGA-SSSKGKAANWLKATYNQPDV---KTLGLGDGPNDLP 209 (221)
T ss_pred cEEec-Cc----hhHHHHHHHHHHHc-CCeEEecCCeeEEecC-CCCHHHHHHHHHHHhCCCCC---cEEEECCCHHHHH
Confidence 11110 01 12233444445444 4666556789999999 99999999999999999988 9999999999999
Q ss_pred HHHHHHhcCCceEEEE
Q 040896 237 AFKVIRHMGRGYPIIV 252 (288)
Q Consensus 237 Ml~~~~~~~~g~~v~v 252 (288)
||+++ |+||++
T Consensus 210 ml~~a-----g~~va~ 220 (221)
T TIGR02463 210 LLEVA-----DYAVVI 220 (221)
T ss_pred HHHhC-----CceEEe
Confidence 99999 899986
No 31
>PTZ00174 phosphomannomutase; Provisional
Probab=99.95 E-value=1.1e-26 Score=201.47 Aligned_cols=203 Identities=16% Similarity=0.222 Sum_probs=122.4
Q ss_pred CcEEEEEecCCccccCcCCCCCCCCCHHHHHHHHHHhhcC-CEEEEcCCChhhHhhhcCCC---C-eEEEccCceeEeCC
Q 040896 20 KKIVVFLDYDGTLSPIVEDPDKAFMSDTMRMAVHEVAHFF-PTAIVSGRCLDKVSRFVQLK---N-VVYAGSHGMDISTP 94 (288)
Q Consensus 20 ~~~li~~DlDGTL~~~~~~~~~~~i~~~~~~aL~~L~~~~-~v~i~TGR~~~~l~~~~~~~---~-~~~i~~nGa~i~~~ 94 (288)
+.|+|++||||||++ +++.+++.++++|+++++.+ .|+|||||++..+.+.++.. . .++||+||+.|+..
T Consensus 4 ~~klia~DlDGTLL~-----~~~~is~~~~~ai~~l~~~Gi~~viaTGR~~~~i~~~l~~~~~~~~~~~I~~NGa~I~~~ 78 (247)
T PTZ00174 4 KKTILLFDVDGTLTK-----PRNPITQEMKDTLAKLKSKGFKIGVVGGSDYPKIKEQLGEDVLEDFDYVFSENGLVAYKD 78 (247)
T ss_pred CCeEEEEECcCCCcC-----CCCCCCHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHhhhhhcccCeEEeCCceEEEEC
Confidence 479999999999998 56789999999999999995 89999999999998887632 1 36899999999964
Q ss_pred CCCcccCCCCCcccccccCCCceeccCCCccchhHHHHHHHHHHHH-----hhccCCeEEEecCceEEEec-cCCCcc--
Q 040896 95 AGSLKQNNPKHETRTVDEQGNEVVHFQPAQEFLPQIQEMIQVLEEK-----IKTIKGATVEDNKFCISVHF-RRVDED-- 166 (288)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~e~~~~~~~~~~-~~~~~~-- 166 (288)
+..+.. +. +...... ....++.+.+... .....+.+...........+ ......
T Consensus 79 ~~~i~~-------~~--------i~~~l~~---~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (247)
T PTZ00174 79 GELFHS-------QS--------ILKFLGE---EKLKKFINFCLRYIADLDIPVKRGTFIEYRNGMINISPIGRNCSQEE 140 (247)
T ss_pred CeEEEE-------Ec--------chhcCCH---HHHHHHHHHHHHHHHhcCCccceeeeEEcCCceEEeccccccCCHHH
Confidence 322110 00 0000111 2233333333221 01111222221111111110 000000
Q ss_pred ---c----H-HHHHHHHHHHH-HhCCCe--EEeC-CceEEEEeCCCCCCHHHHHHHHHHhcCCCCCCCceeEEEcC----
Q 040896 167 ---D----I-NTLQEMVNSIV-EAYPNF--RISG-GKKVMEIRPCIDWDKGRALEYLLDTFGFNNASDFLPLYIGD---- 230 (288)
Q Consensus 167 ---~----~-~~~~~~l~~~~-~~~~~~--~~~~-~~~~ieI~~~~~~sKg~al~~l~~~~~~~~~~~~~vv~~GD---- 230 (288)
. . ....+.+.+.+ +.++++ ...+ +..++||+|+ |+|||+||++|+++ .+ +|++|||
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~s~~~~~~leI~~~-gvsKg~al~~L~~~----~~---eviafGD~~~~ 212 (247)
T PTZ00174 141 RDEFEKYDKEHHIREKFIQDLKKEFSDLGLKFSIGGQISFDVFPK-GWDKTYCLRHLEND----FK---EIHFFGDKTFE 212 (247)
T ss_pred HHHHHhcCCcchHHHHHHHHHHHhcCCCCeEEEecCceEEEeeeC-CCcHHHHHHHHHhh----hh---hEEEEcccCCC
Confidence 0 0 01112222222 344433 2333 3579999999 99999999999999 24 9999999
Q ss_pred CcccHHHHHHHHhcCCceEEEEecCCC
Q 040896 231 DKTDEDAFKVIRHMGRGYPIIVSSVPR 257 (288)
Q Consensus 231 s~ND~~Ml~~~~~~~~g~~v~v~na~~ 257 (288)
+.||++||++++. .|++| +||.+
T Consensus 213 ~~NDieMl~~~~~--~g~~v--~n~~~ 235 (247)
T PTZ00174 213 GGNDYEIYNDPRT--IGHSV--KNPED 235 (247)
T ss_pred CCCcHhhhhcCCC--ceEEe--CCHHH
Confidence 8999999997632 15555 46644
No 32
>PLN02423 phosphomannomutase
Probab=99.94 E-value=1.8e-25 Score=193.39 Aligned_cols=213 Identities=17% Similarity=0.297 Sum_probs=131.3
Q ss_pred cCCcEEEEEecCCccccCcCCCCCCCCCHHHHHHHHHHhhcCCEEEEcCCChhhHhhhcCCC---C-eEEEccCceeEeC
Q 040896 18 KGKKIVVFLDYDGTLSPIVEDPDKAFMSDTMRMAVHEVAHFFPTAIVSGRCLDKVSRFVQLK---N-VVYAGSHGMDIST 93 (288)
Q Consensus 18 ~~~~~li~~DlDGTL~~~~~~~~~~~i~~~~~~aL~~L~~~~~v~i~TGR~~~~l~~~~~~~---~-~~~i~~nGa~i~~ 93 (288)
...++++|+||||||++ +++.++++++++|++|++++.|++||||++..+...++.. . .++|++||+.++.
T Consensus 4 ~~~~~i~~~D~DGTLl~-----~~~~i~~~~~~ai~~l~~~i~fviaTGR~~~~~~~~~~~~~~~~~~~~I~~NGa~i~~ 78 (245)
T PLN02423 4 RKPGVIALFDVDGTLTA-----PRKEATPEMLEFMKELRKVVTVGVVGGSDLSKISEQLGKTVINDYDYVFSENGLVAHK 78 (245)
T ss_pred CccceEEEEeccCCCcC-----CCCcCCHHHHHHHHHHHhCCEEEEECCcCHHHHHHHhcccccccCCEEEECCceEEEe
Confidence 34445677999999998 5678999999999999977899999999999998877532 1 3789999999985
Q ss_pred CCCCcccCCCCCcccccccCCCceeccCCCccchhHHHHHHHHHHHHhh-----ccCCeEEEecCceEEEe--ccCCCcc
Q 040896 94 PAGSLKQNNPKHETRTVDEQGNEVVHFQPAQEFLPQIQEMIQVLEEKIK-----TIKGATVEDNKFCISVH--FRRVDED 166 (288)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~e~~~~~~~~~--~~~~~~~ 166 (288)
.+....... +...... .....+.+.+..+.. ...+.+++......... ...+...
T Consensus 79 ~g~~i~~~~---------------l~~~l~~---~~~~~ii~~~~~~~~~~~i~~~~~~~ie~~~~i~~~~~~~~~~~~~ 140 (245)
T PLN02423 79 DGKLIGTQS---------------LKSFLGE---DKLKEFINFTLHYIADLDIPIKRGTFIEFRSGMLNVSPIGRNCSQE 140 (245)
T ss_pred CCEEEEEec---------------ccccCCH---HHHHHHHHHHHHHHHHcCCccccCCeEEccCCccccCcccccCCHh
Confidence 433221100 0000111 123333333322111 11223333222111111 1111100
Q ss_pred ------c---HHHHHHHH-HHHHHhCCCeEE---eCCceEEEEeCCCCCCHHHHHHHHHHhcCCCCCCCceeEEEcC---
Q 040896 167 ------D---INTLQEMV-NSIVEAYPNFRI---SGGKKVMEIRPCIDWDKGRALEYLLDTFGFNNASDFLPLYIGD--- 230 (288)
Q Consensus 167 ------~---~~~~~~~l-~~~~~~~~~~~~---~~~~~~ieI~~~~~~sKg~al~~l~~~~~~~~~~~~~vv~~GD--- 230 (288)
. .....+.+ +.+.++++++.+ .+|..|+||+|+ |+|||.||+.|+ +.+ ++++|||
T Consensus 141 ~~~~~~~i~~i~~~~~~~~~~l~~~~~~~~~~~s~~g~~~iDi~~~-gvnKg~al~~L~-----~~~---e~~aFGD~~~ 211 (245)
T PLN02423 141 ERDEFEKYDKVHNIRPKMVSVLREKFAHLNLTYSIGGQISFDVFPQ-GWDKTYCLQFLE-----DFD---EIHFFGDKTY 211 (245)
T ss_pred HHhhHHhhCccchHHHHHHHHHHHhCCCCcEEEecCCcEEEEEeeC-CCCHHHHHHHhc-----CcC---eEEEEeccCC
Confidence 0 01111222 223345554333 345689999999 999999999999 455 9999999
Q ss_pred -CcccHHHHHHHHhcCCceEEEEecCCCCccceEEeCChhHHHHHHHHHH
Q 040896 231 -DKTDEDAFKVIRHMGRGYPIIVSSVPRETKALYSLRDPDEVMSFLRRLA 279 (288)
Q Consensus 231 -s~ND~~Ml~~~~~~~~g~~v~v~na~~~~~A~~~~~~~~~v~~~l~~~~ 279 (288)
+.||++||+... -.+++ |++++++.++|++++
T Consensus 212 ~~~ND~eMl~~~~----~~~~~-------------~~~~~~~~~~~~~~~ 244 (245)
T PLN02423 212 EGGNDHEIFESER----TIGHT-------------VTSPDDTREQCTALF 244 (245)
T ss_pred CCCCcHHHHhCCC----cceEE-------------eCCHHHHHHHHHHhc
Confidence 799999999641 12332 678999999998875
No 33
>PRK14502 bifunctional mannosyl-3-phosphoglycerate synthase/mannosyl-3 phosphoglycerate phosphatase; Provisional
Probab=99.94 E-value=1.6e-24 Score=205.63 Aligned_cols=247 Identities=17% Similarity=0.214 Sum_probs=149.8
Q ss_pred ccchhhHHHHHHhh----cCCcEEEEEecCCccccCcCCCCCCCCCHHHHHHHHHHhhcC-CEEEEcCCChhhHhhhc--
Q 040896 4 PSALDTFDRMVAAA----KGKKIVVFLDYDGTLSPIVEDPDKAFMSDTMRMAVHEVAHFF-PTAIVSGRCLDKVSRFV-- 76 (288)
Q Consensus 4 ~~~~~~~~~~~~~~----~~~~~li~~DlDGTL~~~~~~~~~~~i~~~~~~aL~~L~~~~-~v~i~TGR~~~~l~~~~-- 76 (288)
|+-+..=-.+++++ ..++|+||+||||||++ .+..+++.++++|++|++++ .|++||||++..+..++
T Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~KLIfsDLDGTLLd-----~d~~i~~~t~eAL~~L~ekGI~~VIATGRs~~~i~~l~~~ 469 (694)
T PRK14502 395 PDGELISRAARPSRLPSSGQFKKIVYTDLDGTLLN-----PLTYSYSTALDALRLLKDKELPLVFCSAKTMGEQDLYRNE 469 (694)
T ss_pred CCCCccchhhhcccCCCcCceeeEEEEECcCCCcC-----CCCccCHHHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHH
Confidence 44444444556664 24779999999999999 34567789999999999995 89999999999888765
Q ss_pred -CCCCeEEEccCceeEeCCCCCcccCCCCCcccccc-cCCCceeccCCCccchhHHHHHHHHHHHHhh-------ccCCe
Q 040896 77 -QLKNVVYAGSHGMDISTPAGSLKQNNPKHETRTVD-EQGNEVVHFQPAQEFLPQIQEMIQVLEEKIK-------TIKGA 147 (288)
Q Consensus 77 -~~~~~~~i~~nGa~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~ 147 (288)
++. .++||+||+.|+.+++... .+.. .+ ..+..++ +...-++ ..+.++.+.+..... .....
T Consensus 470 Lgl~-~~~I~eNGA~I~~~~~~~~-~~~~-----~~~~~~~~iI-~~~~l~~-e~i~~IL~~lke~l~~~i~ihv~~~~~ 540 (694)
T PRK14502 470 LGIK-DPFITENGGAIFIPKDYFR-LPFA-----YDRVAGNYLV-IELGMAY-KDIRHILKKALAEACTEIENSEKAGNI 540 (694)
T ss_pred cCCC-CeEEEcCCCEEEECCCccc-cccc-----ccccCCCeEE-EEcCCCH-HHHHHHHHHHHHhhcceeeeeeccCcE
Confidence 433 5799999999998764210 0000 00 0000011 1111010 122223332221100 00001
Q ss_pred EEEec-------------------------CceEEEeccCCCcccHHHHHHHHHHHHHhCCCeEEeCCceEEEEeCCCCC
Q 040896 148 TVEDN-------------------------KFCISVHFRRVDEDDINTLQEMVNSIVEAYPNFRISGGKKVMEIRPCIDW 202 (288)
Q Consensus 148 ~~e~~-------------------------~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ieI~~~~~~ 202 (288)
++... .+...+.+.. + .+..+.+.+.+++. ++.+..++.++||+ + ++
T Consensus 541 ~i~~~~d~~~~ei~~~TgL~~~~a~~a~~Re~seKIl~~g-d----~e~Leel~~~L~~~-~l~v~~g~rfleI~-~-gv 612 (694)
T PRK14502 541 FITSFGDMSVEDVSRLTDLNLKQAELAKQREYSETVHIEG-D----KRSTNIVLNHIQQS-GLEYSFGGRFYEVT-G-GN 612 (694)
T ss_pred EEecCCcccHHHHHHhhCCCHHHHHHHhhccCceeEEEcC-C----HHHHHHHHHHHHHc-CcEEEECCEEEEeC-C-CC
Confidence 11000 0000000100 0 13344555555554 57776688999999 7 89
Q ss_pred CHHHHHHHHHHhcCCCCCCCceeEEE--cCCcccHHHHHHHHhcCCceEEEEecCCCC--cc--ce-EEeC--ChhHHHH
Q 040896 203 DKGRALEYLLDTFGFNNASDFLPLYI--GDDKTDEDAFKVIRHMGRGYPIIVSSVPRE--TK--AL-YSLR--DPDEVMS 273 (288)
Q Consensus 203 sKg~al~~l~~~~~~~~~~~~~vv~~--GDs~ND~~Ml~~~~~~~~g~~v~v~na~~~--~~--A~-~~~~--~~~~v~~ 273 (288)
|||.||++|++.++++.+ ++++| |||.||++||+++ |+||+|++...+ .. -. .++. ++.|=.+
T Consensus 613 dKG~AL~~L~e~~gI~~~---eViafalGDs~NDisMLe~A-----g~gVAM~~~~~~~~~l~~~~~~~~~~~GP~GW~e 684 (694)
T PRK14502 613 DKGKAIKILNELFRLNFG---NIHTFGLGDSENDYSMLETV-----DSPILVQRPGNKWHKMRLRNPSYVKGVGPEGFSR 684 (694)
T ss_pred CHHHHHHHHHHHhCCCcc---ceEEEEcCCcHhhHHHHHhC-----CceEEEcCCCCCCCccCCCCceecCCCCcHHHHH
Confidence 999999999999999877 88888 9999999999999 899999876432 11 11 1333 4666555
Q ss_pred HHHHHHH
Q 040896 274 FLRRLAR 280 (288)
Q Consensus 274 ~l~~~~~ 280 (288)
.++.++.
T Consensus 685 ai~~~L~ 691 (694)
T PRK14502 685 AVTDIIL 691 (694)
T ss_pred HHHHHHh
Confidence 5555543
No 34
>PF05116 S6PP: Sucrose-6F-phosphate phosphohydrolase; InterPro: IPR006380 This family of sequences represent sucrose phosphate phosphohydrolase (SPP) from plants and cyanobacteria []. SPP is a member of the Class IIB subfamily of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. SPP catalyzes the final step in the biosynthesis of sucrose, a critically important molecule for plants. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.; PDB: 1TJ5_A 2B1Q_A 1TJ4_A 1S2O_A 1U2T_A 2D2V_A 1TJ3_A 1U2S_A 2B1R_A 3GYG_B ....
Probab=99.94 E-value=2.4e-26 Score=198.98 Aligned_cols=219 Identities=20% Similarity=0.231 Sum_probs=131.4
Q ss_pred CcEEEEEecCCccccCcCCCCCCCCCHHHHHHHHHHhhc-CCEEEEcCCChhhHhhhc---CCC-CeEEEccCceeEeCC
Q 040896 20 KKIVVFLDYDGTLSPIVEDPDKAFMSDTMRMAVHEVAHF-FPTAIVSGRCLDKVSRFV---QLK-NVVYAGSHGMDISTP 94 (288)
Q Consensus 20 ~~~li~~DlDGTL~~~~~~~~~~~i~~~~~~aL~~L~~~-~~v~i~TGR~~~~l~~~~---~~~-~~~~i~~nGa~i~~~ 94 (288)
+++||++||||||++ .+..-...+.+.++...+. ..++++|||+...+.+.+ ++| +.++||++|+.|+..
T Consensus 1 ~~~ll~sDlD~Tl~~-----~~~~~~~~l~~~l~~~~~~~~~~v~~TGRs~~~~~~~~~~~~l~~Pd~~I~svGt~I~~~ 75 (247)
T PF05116_consen 1 PPRLLASDLDGTLID-----GDDEALARLEELLEQQARPEILFVYVTGRSLESVLRLLREYNLPQPDYIITSVGTEIYYG 75 (247)
T ss_dssp -SEEEEEETBTTTBH-----CHHHHHHHHHHHHHHHHCCGEEEEEE-SS-HHHHHHHHHHCT-EE-SEEEETTTTEEEES
T ss_pred CCEEEEEECCCCCcC-----CCHHHHHHHHHHHHHhhCCCceEEEECCCCHHHHHHHHHhCCCCCCCEEEecCCeEEEEc
Confidence 368999999999993 1212223344444411122 479999999999999875 332 467999999999983
Q ss_pred CCC-cccCCCCCcccccccCCCceeccCCCccchhHHHHHHHHHHHHhhccCCeEE----EecCceEEEeccCCCcccHH
Q 040896 95 AGS-LKQNNPKHETRTVDEQGNEVVHFQPAQEFLPQIQEMIQVLEEKIKTIKGATV----EDNKFCISVHFRRVDEDDIN 169 (288)
Q Consensus 95 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----e~~~~~~~~~~~~~~~~~~~ 169 (288)
... ....|... ....|. ...+.+.+. .+++... ..+.+.+++.+..... .
T Consensus 76 ~~~~~d~~w~~~----------------i~~~w~--~~~v~~~l~----~~~~l~~q~~~~q~~~k~sy~~~~~~~---~ 130 (247)
T PF05116_consen 76 ENWQPDEEWQAH----------------IDERWD--RERVEEILA----ELPGLRPQPESEQRPFKISYYVDPDDS---A 130 (247)
T ss_dssp STTEE-HHHHHH----------------HHTT----HHHHHHHHH----CHCCEEEGGCCCGCCTCECEEEETTSH---C
T ss_pred CCCcChHHHHHH----------------HHhcCC--hHHHHHHHH----HhhCcccCCccccCCeeEEEEEecccc---h
Confidence 311 11112110 011111 122333332 3344322 2334566665543222 2
Q ss_pred HHHHHHHHHHHhCC-CeE-EeCCceEEEEeCCCCCCHHHHHHHHHHhcCCCCCCCceeEEEcCCcccHHHHHHHHhcCCc
Q 040896 170 TLQEMVNSIVEAYP-NFR-ISGGKKVMEIRPCIDWDKGRALEYLLDTFGFNNASDFLPLYIGDDKTDEDAFKVIRHMGRG 247 (288)
Q Consensus 170 ~~~~~l~~~~~~~~-~~~-~~~~~~~ieI~~~~~~sKg~al~~l~~~~~~~~~~~~~vv~~GDs~ND~~Ml~~~~~~~~g 247 (288)
...+.+++.++... .+. ++++..+++|.|+ ++|||.||++|+++++++.+ +++++|||.||++||... .
T Consensus 131 ~~~~~i~~~l~~~~l~~~~i~s~~~~ldilP~-~a~K~~Al~~L~~~~~~~~~---~vl~aGDSgND~~mL~~~-----~ 201 (247)
T PF05116_consen 131 DILEEIRARLRQRGLRVNVIYSNGRDLDILPK-GASKGAALRYLMERWGIPPE---QVLVAGDSGNDLEMLEGG-----D 201 (247)
T ss_dssp HHHHHHHHHHHCCTCEEEEEECTCCEEEEEET-T-SHHHHHHHHHHHHT--GG---GEEEEESSGGGHHHHCCS-----S
T ss_pred hHHHHHHHHHHHcCCCeeEEEccceeEEEccC-CCCHHHHHHHHHHHhCCCHH---HEEEEeCCCCcHHHHcCc-----C
Confidence 44566777776542 233 3577899999999 99999999999999999877 999999999999999765 6
Q ss_pred eEEEEecCCCC--------cc--ce-EEeC--ChhHHHHHHHH
Q 040896 248 YPIIVSSVPRE--------TK--AL-YSLR--DPDEVMSFLRR 277 (288)
Q Consensus 248 ~~v~v~na~~~--------~~--A~-~~~~--~~~~v~~~l~~ 277 (288)
.+|.|+|+.++ .. .+ |+.. ...||.+-|++
T Consensus 202 ~~vvV~Na~~e~~~~~~~~~~~~~~iy~a~~~~a~GIlegl~~ 244 (247)
T PF05116_consen 202 HGVVVGNAQPELLSWLLEKLRQQERIYFAQGPYAAGILEGLQH 244 (247)
T ss_dssp EEEE-TTS-HHHHHHHHHCC-TTE--EE-SS-THHHHHHHHHH
T ss_pred CEEEEcCCCHHHHHHHHHhcccCCceEecCCCCcHHHHHHHHH
Confidence 89999999765 11 22 4443 35678887765
No 35
>PRK12702 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=99.91 E-value=4.5e-23 Score=178.27 Aligned_cols=204 Identities=12% Similarity=0.089 Sum_probs=128.4
Q ss_pred cEEEEEecCCccccCcCCCCCCCCCHHHHHHHHHHhhcC-CEEEEcCCChhhHhhhc---CCCCeEEEccCceeEeCCCC
Q 040896 21 KIVVFLDYDGTLSPIVEDPDKAFMSDTMRMAVHEVAHFF-PTAIVSGRCLDKVSRFV---QLKNVVYAGSHGMDISTPAG 96 (288)
Q Consensus 21 ~~li~~DlDGTL~~~~~~~~~~~i~~~~~~aL~~L~~~~-~v~i~TGR~~~~l~~~~---~~~~~~~i~~nGa~i~~~~~ 96 (288)
.|+||+||||||+++ +..+++.++++|++|++.+ .|++||||++..+..++ ++. .++|++||+.|+.+..
T Consensus 1 ~KLIftDLDGTLLd~-----~~~~~~~a~~aL~~Lk~~GI~vVlaTGRt~~ev~~l~~~Lgl~-~p~I~eNGA~I~~p~~ 74 (302)
T PRK12702 1 MRLVLSSLDGSLLDL-----EFNSYGAARQALAALERRSIPLVLYSLRTRAQLEHLCRQLRLE-HPFICEDGSAIYVPEH 74 (302)
T ss_pred CcEEEEeCCCCCcCC-----CCcCCHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCC-CeEEEeCCcEEEEccc
Confidence 379999999999994 4568889999999999995 99999999999988874 444 4899999999998754
Q ss_pred Cc-----ccCCCCCcccccccCCCceeccCCCccchhHHH---HHHHHHHH----H-------hhccCCeEE------Ee
Q 040896 97 SL-----KQNNPKHETRTVDEQGNEVVHFQPAQEFLPQIQ---EMIQVLEE----K-------IKTIKGATV------ED 151 (288)
Q Consensus 97 ~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~----~-------~~~~~~~~~------e~ 151 (288)
.. ...|. .....+ .+.....+..++. ++.+.+.. | +....|... ..
T Consensus 75 ~~~~~~~~~~~~--------~~~~~~-~~~lg~~y~~ir~~L~~l~~~~~~~f~gF~d~t~~ei~~~TGL~~~~A~~A~~ 145 (302)
T PRK12702 75 YFPAGILDEQWQ--------HRPPYY-VCALGLPYPCLRHILQQVRQDSHLDLIGFGDWTASELAAATGIPLEEAERAQK 145 (302)
T ss_pred cccccccccccc--------cCCCce-EEecCCCHHHHHHHHHHHHHHhCCCceehhhCCHHHHHHHhCcCHHHHHHHHh
Confidence 21 00010 000001 1112222222222 22221100 0 001111100 12
Q ss_pred cCceEEEeccCCCcccHHHHHHHHHHHHHhCCCeEEeCCceEEEEeC---------------------CCCCCHHHHHHH
Q 040896 152 NKFCISVHFRRVDEDDINTLQEMVNSIVEAYPNFRISGGKKVMEIRP---------------------CIDWDKGRALEY 210 (288)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ieI~~---------------------~~~~sKg~al~~ 210 (288)
+.++-.+.+...+ . .+.+.+.+. ++.+..|..|+.++. . +.+||.|+++
T Consensus 146 Re~SEp~~w~~~~-----~---~~~~~~~~~-g~~~~~GgRf~H~l~~~~~~~~~~~~~~~~~~~~~~~-~~dKg~A~~~ 215 (302)
T PRK12702 146 REYSEIFSYSGDP-----A---RLREAFAQQ-EANLTQHLLRLHQLHFSDLPQWYLTGWMQPTLAAEPN-SLPGEQAVQL 215 (302)
T ss_pred ccCCcceEecCCH-----H---HHHHHHHHc-CCeEEecCceEEecccccccccccccccccccccccC-CCCHHHHHHH
Confidence 2333333333211 1 114445554 688888888888873 2 6899999999
Q ss_pred HHHhcCCCCCCCceeEEEcCCcccHHHHHHHHhcCCceEEEEecC
Q 040896 211 LLDTFGFNNASDFLPLYIGDDKTDEDAFKVIRHMGRGYPIIVSSV 255 (288)
Q Consensus 211 l~~~~~~~~~~~~~vv~~GDs~ND~~Ml~~~~~~~~g~~v~v~na 255 (288)
|++.+.-..... .+++.|||.||++||+++ .++|.+.+.
T Consensus 216 L~~~y~~~~~~~-~tiaLGDspND~~mLe~~-----D~~vvi~~~ 254 (302)
T PRK12702 216 LLDCYQRHLGPI-KALGIGCSPPDLAFLRWS-----EQKVVLPSP 254 (302)
T ss_pred HHHHHHhccCCc-eEEEecCChhhHHHHHhC-----CeeEEecCC
Confidence 999986542212 899999999999999999 589988654
No 36
>TIGR02461 osmo_MPG_phos mannosyl-3-phosphoglycerate phosphatase. Members of this family are mannosyl-3-phosphoglycerate phosphatase (EC 3.1.3.70). It acts sequentially after mannosyl-3-phosphoglycerate synthase (EC 2.4.1.217) in a two-step pathway of biosynthesis of the compatible solute mannosylglycerate, a typical osmolyte of thermophiles.
Probab=99.91 E-value=7.4e-24 Score=180.97 Aligned_cols=199 Identities=23% Similarity=0.332 Sum_probs=116.7
Q ss_pred EEEEecCCccccCcCCCCCCCCCHHHHHHHHHHhhcC-CEEEEcCCChhhHhhhc---CCCCeEEEccCceeEeCCCCCc
Q 040896 23 VVFLDYDGTLSPIVEDPDKAFMSDTMRMAVHEVAHFF-PTAIVSGRCLDKVSRFV---QLKNVVYAGSHGMDISTPAGSL 98 (288)
Q Consensus 23 li~~DlDGTL~~~~~~~~~~~i~~~~~~aL~~L~~~~-~v~i~TGR~~~~l~~~~---~~~~~~~i~~nGa~i~~~~~~~ 98 (288)
+|||||||||++. + .+++++.++|++|++.+ +|++||||+...+.+++ ++. .++|++||+.|+.+....
T Consensus 1 li~~DlDGTLl~~-----~-~~~~~~~~ai~~l~~~G~~~vi~TgR~~~~~~~~~~~lg~~-~~~I~~NGa~I~~~~~~~ 73 (225)
T TIGR02461 1 VIFTDLDGTLLPP-----G-YEPGPAREALEELKDLGFPIVFVSSKTRAEQEYYREELGVE-PPFIVENGGAIFIPRGYF 73 (225)
T ss_pred CEEEeCCCCCcCC-----C-CCchHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHcCCC-CcEEEcCCcEEEecCccc
Confidence 5899999999982 2 35668999999999995 89999999999988865 443 479999999999864310
Q ss_pred ccCCCCCcccccccCCCc-eeccCCCccchhHHHHHHHHHHH-Hh-hccCCeEEE-----------------ecCceEEE
Q 040896 99 KQNNPKHETRTVDEQGNE-VVHFQPAQEFLPQIQEMIQVLEE-KI-KTIKGATVE-----------------DNKFCISV 158 (288)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~e-----------------~~~~~~~~ 158 (288)
. |..-. -+..+.. ........ ..+..+.+.+.. +. ......... ...+.-.+
T Consensus 74 ~--~~~~~---~~~~~~~~i~~~~l~~---~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~ 145 (225)
T TIGR02461 74 P--FPVGA---GREVGNYEVIELGKPV---AKIRAALKEAENEYGLKYYGNSTAEEVEKLTGLPRELAPLAKRREYSETI 145 (225)
T ss_pred c--ccccc---cccCCCeEEEEcCCCH---HHHHHHHHHHHHhcCccchhcCCHHHHHHHHCcCHHHHHHHHhhhcCCcc
Confidence 0 00000 0000000 00011111 112222222221 00 000000000 00000000
Q ss_pred eccCCCcccHHHHHHHHHHHHHhCCCeEEeCCceEEEEeCCCCCCHHHHHHHHHHhcCC--CCCCCceeEEEcCCcccHH
Q 040896 159 HFRRVDEDDINTLQEMVNSIVEAYPNFRISGGKKVMEIRPCIDWDKGRALEYLLDTFGF--NNASDFLPLYIGDDKTDED 236 (288)
Q Consensus 159 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ieI~~~~~~sKg~al~~l~~~~~~--~~~~~~~vv~~GDs~ND~~ 236 (288)
+.. + .+..+.+.+.++.. ++.+..+..++++ ++ ++|||.|++++++.+++ +.+ ++++|||+.||++
T Consensus 146 -~~~-~----~e~~~~~~~~~~~~-~~~~~~s~~~~~i-~~-~~sK~~al~~l~~~~~~~~~~~---~~i~~GD~~nD~~ 213 (225)
T TIGR02461 146 -FLW-S----REGWEAILVTARAR-GLKYTHGGRFYTV-HG-GSDKGKAIKRLLDLYKLRPGAI---ESVGLGDSENDFP 213 (225)
T ss_pred -cCC-C----HHHHHHHHHHHHHc-CCcEEECCEEEEE-CC-CCCHHHHHHHHHHHhccccCcc---cEEEEcCCHHHHH
Confidence 000 1 12222333333332 5677666667775 77 99999999999999977 444 8999999999999
Q ss_pred HHHHHHhcCCceEEEEe
Q 040896 237 AFKVIRHMGRGYPIIVS 253 (288)
Q Consensus 237 Ml~~~~~~~~g~~v~v~ 253 (288)
||+.+ |++|++|
T Consensus 214 ml~~a-----g~~v~v~ 225 (225)
T TIGR02461 214 MFEVV-----DLAFLVG 225 (225)
T ss_pred HHHhC-----CCcEecC
Confidence 99999 8999875
No 37
>KOG1050 consensus Trehalose-6-phosphate synthase component TPS1 and related subunits [Carbohydrate transport and metabolism]
Probab=99.86 E-value=5.5e-20 Score=177.69 Aligned_cols=232 Identities=26% Similarity=0.327 Sum_probs=183.7
Q ss_pred hhHHHHHHhh-cCCcEEEEEecCCccccCcCCCCCCCCCHHHHHHHHHHhhcC--CEEEEcCCChhhHhhhc-CCCCeEE
Q 040896 8 DTFDRMVAAA-KGKKIVVFLDYDGTLSPIVEDPDKAFMSDTMRMAVHEVAHFF--PTAIVSGRCLDKVSRFV-QLKNVVY 83 (288)
Q Consensus 8 ~~~~~~~~~~-~~~~~li~~DlDGTL~~~~~~~~~~~i~~~~~~aL~~L~~~~--~v~i~TGR~~~~l~~~~-~~~~~~~ 83 (288)
+.-++++..+ ++++++|++|+|||+.... +..+...|+.|..++ .|.|+|||.+..+..++ +.+++++
T Consensus 489 l~~~~~i~~y~~s~~rli~ldyd~t~~~~~--------~~~~~~~l~~L~~dp~n~v~i~s~~~r~~l~~~~~~~~~lgl 560 (732)
T KOG1050|consen 489 LTAEHIVSDYKKSKKRLILLDYDLTLIPPR--------SIKAISILKDLCSDPKNIVYIVSGRGRSVLEKWFFGCKNLGL 560 (732)
T ss_pred cChhHhhhhhhhccceEEEecccccccCCC--------CchHHHHHHHHhcCCCCeEEEEEccCchhhhhhcccccccee
Confidence 3446677776 6789999999999998832 222899999999984 79999999999998875 6789999
Q ss_pred EccCceeEeCCCCCcccCCCCCcccccccCCCceeccCCCccchhHHHHHHHHHHHHhhccCCeEEEecCceEEEeccCC
Q 040896 84 AGSHGMDISTPAGSLKQNNPKHETRTVDEQGNEVVHFQPAQEFLPQIQEMIQVLEEKIKTIKGATVEDNKFCISVHFRRV 163 (288)
Q Consensus 84 i~~nGa~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~ 163 (288)
+++||+++..+++ |.. .. .+ ..|.+.+.+.+..+.+++||+++|.++..+.|+|+++
T Consensus 561 ~aEhG~f~r~~~~-----w~~---------------~~--~~-~~w~~~v~~i~~~~~ert~GS~ie~k~~~l~~hy~~a 617 (732)
T KOG1050|consen 561 AAEHGYFVRIPGK-----WET---------------CV--LD-LDWKDLVKDIFQYYTERTPGSYIERKETALVWHYRNA 617 (732)
T ss_pred ecccCceeccCCc-----eee---------------ec--cc-ccHHHHHHHHHHHHHhcCCCceecccCceEEEeeecc
Confidence 9999999998766 421 11 11 2588888888888899999999999999999999999
Q ss_pred CcccHHHHHHHHHHHHHh-CCCeEEeCCceEEEEeCCCCCCHHHHHHHHHHhcCCCCCCCceeEEEcCCcccHHHHHHHH
Q 040896 164 DEDDINTLQEMVNSIVEA-YPNFRISGGKKVMEIRPCIDWDKGRALEYLLDTFGFNNASDFLPLYIGDDKTDEDAFKVIR 242 (288)
Q Consensus 164 ~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~ieI~~~~~~sKg~al~~l~~~~~~~~~~~~~vv~~GDs~ND~~Ml~~~~ 242 (288)
+++....+..++.+.+.. ..++.+..++..+|+.|. |+|||.++..++..+.-+ .+.++|+||+..|+.|+..+.
T Consensus 618 d~~~g~~qA~el~~~l~~~~~~~~v~~g~~~Vev~~~-gvsk~~~~~~~~~~~~~~---~df~~c~g~d~tDed~~~~~~ 693 (732)
T KOG1050|consen 618 DPEFGELQAKELLEHLESKNEPVEVVRGKHIVEVRPQ-GVSKGLAAERILSEMVKE---PDFVLCIGDDRTDEDMFEFIS 693 (732)
T ss_pred CcchhHHHHHHHHHHhcccCCCeEEEecCceEEEccc-ccchHHHHHHHHHhcCCC---cceEEEecCCCChHHHHHHHh
Confidence 876544333344333333 224888999999999999 999999999999998833 349999999999999999987
Q ss_pred hcC------CceEEEEecCCCCccceEEeCChhHHHHHHH
Q 040896 243 HMG------RGYPIIVSSVPRETKALYSLRDPDEVMSFLR 276 (288)
Q Consensus 243 ~~~------~g~~v~v~na~~~~~A~~~~~~~~~v~~~l~ 276 (288)
... +-|++++| ...+.|+|.+.++.+|.+.|+
T Consensus 694 ~~~~~~~~~~~F~~~~g--~~~t~a~~~~~~~~~v~~~l~ 731 (732)
T KOG1050|consen 694 KAKDPEKVEEIFACTVG--QKPSKAKYFLDDTHEVIRLLQ 731 (732)
T ss_pred hccCCcccceEEEEEcC--CCCcccccccCChHHHHhhcc
Confidence 643 12455555 567899999999999988764
No 38
>COG3769 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=99.79 E-value=4.7e-18 Score=138.95 Aligned_cols=207 Identities=17% Similarity=0.280 Sum_probs=126.4
Q ss_pred CcEEEEEecCCccccCcCCCCCCCCCHHHHHHHHHHhhcC-CEEEEcCCChhhHhhh---cCCCCeEEEccCceeEeCCC
Q 040896 20 KKIVVFLDYDGTLSPIVEDPDKAFMSDTMRMAVHEVAHFF-PTAIVSGRCLDKVSRF---VQLKNVVYAGSHGMDISTPA 95 (288)
Q Consensus 20 ~~~li~~DlDGTL~~~~~~~~~~~i~~~~~~aL~~L~~~~-~v~i~TGR~~~~l~~~---~~~~~~~~i~~nGa~i~~~~ 95 (288)
-.++||+|+||||+++. .-...+...|.+|++.+ .|++||+++...+..+ +++++.++|++||+.|+.+.
T Consensus 6 ~~~lIFtDlD~TLl~~~------ye~~pA~pv~~el~d~G~~Vi~~SSKT~aE~~~l~~~l~v~~~p~iaEnG~aI~~p~ 79 (274)
T COG3769 6 MPLLIFTDLDGTLLPHS------YEWQPAAPVLLELKDAGVPVILCSSKTRAEMLYLQKSLGVQGLPLIAENGAAIYLPK 79 (274)
T ss_pred cceEEEEcccCcccCCC------CCCCccchHHHHHHHcCCeEEEeccchHHHHHHHHHhcCCCCCceeecCCceEEecc
Confidence 46899999999999942 23445678899999886 9999999999988775 67888999999999999875
Q ss_pred CCcccCCCCCcccccccCCCceeccCCCccchhHHHHHHHHHHHHhhccCCeEEE----------------------ecC
Q 040896 96 GSLKQNNPKHETRTVDEQGNEVVHFQPAQEFLPQIQEMIQVLEEKIKTIKGATVE----------------------DNK 153 (288)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e----------------------~~~ 153 (288)
+-.. .....-...+ +++. +.-..++.+.+.+....+...-.++. .++
T Consensus 80 ~~~~-----~~~~~r~~~g---~~~~---elg~~l~~ire~l~kLee~~g~~~~~~~d~~ei~e~TGlpre~aaLa~~rE 148 (274)
T COG3769 80 GWFP-----FDGKPREISG---ISHI---ELGKVLEKIREKLDKLEEHFGFTTFDDVDDEEIAEWTGLPREQAALAMLRE 148 (274)
T ss_pred cccc-----cCCCCceecc---eEee---ehhhhHHHHHHHHHHHHHHhCeeEeccCCHHHHHHHhCCChHHhHHHHHHH
Confidence 4321 1100000000 0010 11112333333332111111001110 011
Q ss_pred ceEEEeccCCCcccHHHHHHHHHHHHHhCCCeEEeCCceEEEEeCCCCCCHHHHHHHHHHhcCCCCCCCceeEEEcCCcc
Q 040896 154 FCISVHFRRVDEDDINTLQEMVNSIVEAYPNFRISGGKKVMEIRPCIDWDKGRALEYLLDTFGFNNASDFLPLYIGDDKT 233 (288)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ieI~~~~~~sKg~al~~l~~~~~~~~~~~~~vv~~GDs~N 233 (288)
++.++..+..+ .........+.+. ++++..|..|..+... ...||.|++++++.+..-+. ...+++.|||.|
T Consensus 149 yseti~~rs~d-----~~~~~~~~~L~e~-glt~v~garf~~v~~a-s~gKg~Aa~~ll~~y~rl~~-~r~t~~~GDg~n 220 (274)
T COG3769 149 YSETIIWRSSD-----ERMAQFTARLNER-GLTFVHGARFWHVLDA-SAGKGQAANWLLETYRRLGG-ARTTLGLGDGPN 220 (274)
T ss_pred hhhheeecccc-----hHHHHHHHHHHhc-CceEEeccceEEEecc-ccCccHHHHHHHHHHHhcCc-eeEEEecCCCCC
Confidence 22222222111 1112233333333 6888888788888877 77899999999988743221 115999999999
Q ss_pred cHHHHHHHHhcCCceEEEEecCC
Q 040896 234 DEDAFKVIRHMGRGYPIIVSSVP 256 (288)
Q Consensus 234 D~~Ml~~~~~~~~g~~v~v~na~ 256 (288)
|.|||+.. .+++.|++-.
T Consensus 221 D~Pl~ev~-----d~AfiV~~ln 238 (274)
T COG3769 221 DAPLLEVM-----DYAFIVKGLN 238 (274)
T ss_pred cccHHHhh-----hhheeecccc
Confidence 99999999 5999999653
No 39
>KOG3189 consensus Phosphomannomutase [Lipid transport and metabolism]
Probab=99.54 E-value=2.5e-13 Score=109.66 Aligned_cols=220 Identities=19% Similarity=0.308 Sum_probs=139.3
Q ss_pred hcCCcEEEEEecCCccccCcCCCCCCCCCHHHHHHHHHHhhcCCEEEEcCCChhhHhhhcCCC----CeEEEccCceeEe
Q 040896 17 AKGKKIVVFLDYDGTLSPIVEDPDKAFMSDTMRMAVHEVAHFFPTAIVSGRCLDKVSRFVQLK----NVVYAGSHGMDIS 92 (288)
Q Consensus 17 ~~~~~~li~~DlDGTL~~~~~~~~~~~i~~~~~~aL~~L~~~~~v~i~TGR~~~~l~~~~~~~----~~~~i~~nGa~i~ 92 (288)
+.....|+.||+||||+. ....+++++.+.|++|++...+.++-|..+..+.+.+|.+ -.+...+||..-+
T Consensus 7 ~r~~~~l~lfdvdgtLt~-----~r~~~~~e~~~~l~~lr~~v~ig~VggsDl~k~~eqlG~~Vl~~fDY~F~ENGl~~y 81 (252)
T KOG3189|consen 7 ARDEETLCLFDVDGTLTP-----PRQKVTPEMLEFLQKLRKKVTIGFVGGSDLSKQQEQLGDNVLEEFDYVFSENGLVAY 81 (252)
T ss_pred hcCCceEEEEecCCcccc-----ccccCCHHHHHHHHHHhhheEEEEeecHHHHHHHHHhchhHHhhhcccccCCCeeEe
Confidence 344568999999999998 5678999999999999999999999999999998888632 3568899999877
Q ss_pred CCCCCcccCCCCCcccccccCCCceeccCCCcc-chhHHHHHHHHHHHH-hhccCCeEEEecCceEEEe--ccCCCccc-
Q 040896 93 TPAGSLKQNNPKHETRTVDEQGNEVVHFQPAQE-FLPQIQEMIQVLEEK-IKTIKGATVEDNKFCISVH--FRRVDEDD- 167 (288)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~e~~~~~~~~~--~~~~~~~~- 167 (288)
..+...-. ++ +..-+..+ +...++-..+++..+ +..-+|.++|.+.-.+.+. -|++..+.
T Consensus 82 k~gk~~~~-------Qs--------i~~~LGee~~q~liNF~LrYlsdidlPiKRGtFiEFRNgMiNvsPIGR~cs~EER 146 (252)
T KOG3189|consen 82 KGGKLLSK-------QS--------IINHLGEEKLQELINFCLRYLSDIDLPIKRGTFIEFRNGMINVSPIGRNCSQEER 146 (252)
T ss_pred eCCcchhH-------HH--------HHHHHhHHHHHHHHHHHHHHHHhcCCcccccceEEecCCceeccccccccCHHHH
Confidence 65443210 00 00001111 112233333444332 1123577888776544433 23443221
Q ss_pred --H------HHHHHHHHHHH-HhCC--CeEE-eCCceEEEEeCCCCCCHHHHHHHHHHhcCCCCCCCceeEEEcCC----
Q 040896 168 --I------NTLQEMVNSIV-EAYP--NFRI-SGGKKVMEIRPCIDWDKGRALEYLLDTFGFNNASDFLPLYIGDD---- 231 (288)
Q Consensus 168 --~------~~~~~~l~~~~-~~~~--~~~~-~~~~~~ieI~~~~~~sKg~al~~l~~~~~~~~~~~~~vv~~GDs---- 231 (288)
+ ..+++.+.+.+ ++|+ ++++ ..|...+|+.|+ |++|.+.|+.+-.. |++ .+.+|||-
T Consensus 147 ~eF~e~Dkk~~iR~K~v~~Lr~~F~~~gLtFSIGGQISfDvFP~-GWDKtyCLqhle~d-gf~-----~IhFFGDkT~~G 219 (252)
T KOG3189|consen 147 NEFEELDKKHKIREKFVEALREEFADYGLTFSIGGQISFDVFPK-GWDKTYCLQHLEKD-GFD-----TIHFFGDKTMPG 219 (252)
T ss_pred HHHHHhhhhhhhHHHHHHHHHHHhcccCeeEEECCeEEEeecCC-CcchhHHHHHhhhc-CCc-----eEEEeccccCCC
Confidence 0 12233322222 3454 4665 356799999999 99999999998776 665 99999995
Q ss_pred cccHHHHHHHHhcCCceEEEEecCCCCccceEEeCChhHHHHHHHHHHH
Q 040896 232 KTDEDAFKVIRHMGRGYPIIVSSVPRETKALYSLRDPDEVMSFLRRLAR 280 (288)
Q Consensus 232 ~ND~~Ml~~~~~~~~g~~v~v~na~~~~~A~~~~~~~~~v~~~l~~~~~ 280 (288)
.||-+.+.-- .++. +.+.++++..+.+++++.
T Consensus 220 GNDyEIf~dp----------------rtiG-hsV~~PdDT~~~~~~if~ 251 (252)
T KOG3189|consen 220 GNDYEIFADP----------------RTIG-HSVTSPDDTVRICEEIFK 251 (252)
T ss_pred CCcceeeeCC----------------cccc-ccccCchHHHHHHHHHhc
Confidence 5665544332 2222 235677777777777764
No 40
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=99.45 E-value=1.2e-12 Score=130.84 Aligned_cols=186 Identities=12% Similarity=0.159 Sum_probs=109.3
Q ss_pred CcEEEE--EecCCccccCcCCCCCCCCCHHHHHHHHHHhh---c--CCEEEEcCCChhhHhhhc---CCC---CeEEEcc
Q 040896 20 KKIVVF--LDYDGTLSPIVEDPDKAFMSDTMRMAVHEVAH---F--FPTAIVSGRCLDKVSRFV---QLK---NVVYAGS 86 (288)
Q Consensus 20 ~~~li~--~DlDGTL~~~~~~~~~~~i~~~~~~aL~~L~~---~--~~v~i~TGR~~~~l~~~~---~~~---~~~~i~~ 86 (288)
.+++++ +|+|+| +. ..+.+.+.++.+.+ . ..|+++|||++..+..++ ++| +..+||.
T Consensus 769 ~~~~~via~D~d~~-~~---------~~~~l~~~~~~~~~~~~~~~igfv~aTGR~l~~~~~~l~~~~lp~~~PD~lI~~ 838 (1050)
T TIGR02468 769 RKRLFVIAVDCYDD-KD---------LLQIIKNIFEAVRKERMEGSSGFILSTSMTISEIQSFLKSGGLNPTDFDALICN 838 (1050)
T ss_pred cceEEEEEeccCCC-CC---------hHHHHHHHHHHHhccccCCceEEEEEcCCCHHHHHHHHHhCCCCCCCCCEEEeC
Confidence 356666 999999 32 12223333334431 2 368999999999999975 454 4679999
Q ss_pred CceeEeCCCC------Ccc--cCCCCCcccccccCCCceeccCCCccchhH-HHHHHHHHHHHhhc--------cCCeEE
Q 040896 87 HGMDISTPAG------SLK--QNNPKHETRTVDEQGNEVVHFQPAQEFLPQ-IQEMIQVLEEKIKT--------IKGATV 149 (288)
Q Consensus 87 nGa~i~~~~~------~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~--------~~~~~~ 149 (288)
.|+.||++.. ... ..|+.+ +.. .| .+.+.+.+..+... -++...
T Consensus 839 vGTeIyy~~~~~~~~~~~~~D~~w~~h----------------I~~---rW~ge~~r~~L~~l~~~~~~~~~~~~~~l~~ 899 (1050)
T TIGR02468 839 SGSELYYPSLNGSEEGKLVADQDYHSH----------------IEY---RWGGEGLRKTLVKWAASINEKKGENEEQIVE 899 (1050)
T ss_pred CCcceeccCcCCCCCCCceECHHHHHH----------------HHc---cCCcHHHHHHHHHHhhhccccccccccccee
Confidence 9999998631 111 012111 111 12 12222222222111 122333
Q ss_pred E----ecCceEEEeccCCCcccHHHHHHHHHHHHHhCC-CeEE-eC-CceEEEEeCCCCCCHHHHHHHHHHhcCCCCCCC
Q 040896 150 E----DNKFCISVHFRRVDEDDINTLQEMVNSIVEAYP-NFRI-SG-GKKVMEIRPCIDWDKGRALEYLLDTFGFNNASD 222 (288)
Q Consensus 150 e----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~-~~-~~~~ieI~~~~~~sKg~al~~l~~~~~~~~~~~ 222 (288)
+ ...+++++...+.+.. ...+.+++.++... .+++ ++ +..+++|.|. .+|||.||++|..+||++.+
T Consensus 900 Q~~~~q~~~k~SY~v~d~~~~---~~v~elr~~Lr~~gLr~~~iys~~~~~LDVlP~-~ASKgqAlRyL~~rwgi~l~-- 973 (1050)
T TIGR02468 900 EDEESSTDHCYAFKVKDPSKV---PPVKELRKLLRIQGLRCHAVYCRNGTRLNVIPL-LASRSQALRYLFVRWGIELA-- 973 (1050)
T ss_pred cChhhCCCceEEEEecCcccC---ccHHHHHHHHHhCCCceEEEeecCCcEeeeeeC-CCCHHHHHHHHHHHcCCChH--
Confidence 2 2346666653332211 22345555555432 2443 44 3599999999 99999999999999999987
Q ss_pred cee-EEEcCCcc-cHH-HHHHH
Q 040896 223 FLP-LYIGDDKT-DED-AFKVI 241 (288)
Q Consensus 223 ~~v-v~~GDs~N-D~~-Ml~~~ 241 (288)
++ +++|||.| |.+ |+.-.
T Consensus 974 -~v~VfaGdSGntD~e~Ll~G~ 994 (1050)
T TIGR02468 974 -NMAVFVGESGDTDYEGLLGGL 994 (1050)
T ss_pred -HeEEEeccCCCCCHHHHhCCc
Confidence 88 55999999 955 55443
No 41
>PF03332 PMM: Eukaryotic phosphomannomutase; InterPro: IPR005002 This enzyme (5.4.2.8 from EC) is involved in the synthesis of the GDP-mannose and dolichol-phosphate-mannose required for a number of critical mannosyl transfer reactions.; GO: 0004615 phosphomannomutase activity, 0019307 mannose biosynthetic process, 0005737 cytoplasm; PDB: 2I55_B 2I54_C 3F9R_A 2FUE_A 2FUC_A 2AMY_A 2Q4R_A.
Probab=99.26 E-value=9.8e-11 Score=97.34 Aligned_cols=194 Identities=17% Similarity=0.267 Sum_probs=118.3
Q ss_pred HHHHHHHHhhcCCEEEEcCCChhhHhhhc-CC---C-CeEEEccCceeEeCCCCCcccCCCCCcccccccCCCceeccCC
Q 040896 48 MRMAVHEVAHFFPTAIVSGRCLDKVSRFV-QL---K-NVVYAGSHGMDISTPAGSLKQNNPKHETRTVDEQGNEVVHFQP 122 (288)
Q Consensus 48 ~~~aL~~L~~~~~v~i~TGR~~~~l~~~~-~~---~-~~~~i~~nGa~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (288)
+.+.|++|++...|+++||-.+..+.+.+ +. . -.++.++||+..|..+... |.+. +...+
T Consensus 1 M~~~L~~L~~~~~vgvVgGsd~~k~~eQl~~~~~~~~fdy~f~enG~~~y~~~~~~---~~~~------------~~~~l 65 (220)
T PF03332_consen 1 MAELLQKLRKKVPVGVVGGSDLPKIQEQLGGDDVLDNFDYVFPENGLVAYKNGELI---WSQS------------IAEFL 65 (220)
T ss_dssp HHHHHHHHHTTSEEEEEESS-HHHHHHHHSTTTHHHH-SEEEEGGGTEEEETTEEE---EE--------------HHHHH
T ss_pred CHHHHHHHHhcCeEEEEcchhHHHHHHHHcccchHhhCCeeecCCCCeEEECCCch---hhHh------------HHHHc
Confidence 46789999988999999999999998877 32 1 2479999999988765432 2110 00001
Q ss_pred Cc-cchhHHHHHHHHHHHH-hhccCCeEEEecCceEEEec--cCCCccc---HH------HHHHHHHH-HHHhCCC--eE
Q 040896 123 AQ-EFLPQIQEMIQVLEEK-IKTIKGATVEDNKFCISVHF--RRVDEDD---IN------TLQEMVNS-IVEAYPN--FR 186 (288)
Q Consensus 123 ~~-~~~~~~~~~~~~~~~~-~~~~~~~~~e~~~~~~~~~~--~~~~~~~---~~------~~~~~l~~-~~~~~~~--~~ 186 (288)
.. .+...++.+..++... +...+|.++|++...+++.. ++++.+. |. .+++.+.+ +-+++|+ ++
T Consensus 66 gee~~~~~in~~l~~~~~l~lp~krGtfIE~R~gmIn~SpiGr~a~~eer~~f~~~D~~~~iR~~~v~~L~~~f~d~~L~ 145 (220)
T PF03332_consen 66 GEEKLQKLINFCLRYISDLDLPVKRGTFIEFRGGMINFSPIGRNASQEERDEFDEYDKKHKIREKLVEALKKEFPDFGLT 145 (220)
T ss_dssp HHHHHHHHHHHHHHHHHT---S---S-SEEEESSEEEE-SS-TTS-HHHHHHHHHHHHHHTHHHHHHHHHHHHTCCCSEE
T ss_pred CHHHHHHHHHHHHHHHHhCCCCccCCCceeecCCcEEECcccCcCCHHHHHhhhhcChhhhHHHHHHHHHHHHCCCCceE
Confidence 11 1111222223332221 12246888999988777763 4444321 11 12333433 3346775 66
Q ss_pred Ee-CCceEEEEeCCCCCCHHHHHHHHHHhcCCCCCCCceeEEEcCC----cccHHHHHHHHhcCCceEEEEecCCCCccc
Q 040896 187 IS-GGKKVMEIRPCIDWDKGRALEYLLDTFGFNNASDFLPLYIGDD----KTDEDAFKVIRHMGRGYPIIVSSVPRETKA 261 (288)
Q Consensus 187 ~~-~~~~~ieI~~~~~~sKg~al~~l~~~~~~~~~~~~~vv~~GDs----~ND~~Ml~~~~~~~~g~~v~v~na~~~~~A 261 (288)
+. .|...+||.|+ |++|.++|++|.+.. + + ++++|||- .||-|.+...+ =.|++
T Consensus 146 ~siGGqiSiDvfp~-GwDKty~Lr~l~~~~-~--~---~I~FfGDkt~pGGNDyei~~~~r----t~g~~---------- 204 (220)
T PF03332_consen 146 FSIGGQISIDVFPK-GWDKTYCLRHLEDEG-F--D---EIHFFGDKTFPGGNDYEIFEDPR----TIGHT---------- 204 (220)
T ss_dssp EEEETTTEEEEEET-T-SGGGGGGGTTTTT----S---EEEEEESS-STTSTTHHHHHSTT----SEEEE----------
T ss_pred EecCCceEEccccC-CccHHHHHHHHHhcc-c--c---eEEEEehhccCCCCCceeeecCC----ccEEE----------
Confidence 64 46899999999 999999999987643 3 3 99999995 79999887642 12332
Q ss_pred eEEeCChhHHHHHHHHHHH
Q 040896 262 LYSLRDPDEVMSFLRRLAR 280 (288)
Q Consensus 262 ~~~~~~~~~v~~~l~~~~~ 280 (288)
|+++++..+.|++++.
T Consensus 205 ---V~~p~DT~~~l~~l~~ 220 (220)
T PF03332_consen 205 ---VTSPEDTIKQLKELFF 220 (220)
T ss_dssp ----SSHHHHHHHHHHHHH
T ss_pred ---eCCHHHHHHHHHHHhC
Confidence 6789999999998863
No 42
>PRK11133 serB phosphoserine phosphatase; Provisional
Probab=99.24 E-value=4.8e-12 Score=113.38 Aligned_cols=68 Identities=24% Similarity=0.251 Sum_probs=59.6
Q ss_pred CCCHHHHHHHHHHhcCCCCCCCceeEEEcCCcccHHHHHHHHhcCCceEEEEecCCCC--ccceEEeC--ChhHHHHHHH
Q 040896 201 DWDKGRALEYLLDTFGFNNASDFLPLYIGDDKTDEDAFKVIRHMGRGYPIIVSSVPRE--TKALYSLR--DPDEVMSFLR 276 (288)
Q Consensus 201 ~~sKg~al~~l~~~~~~~~~~~~~vv~~GDs~ND~~Ml~~~~~~~~g~~v~v~na~~~--~~A~~~~~--~~~~v~~~l~ 276 (288)
+..|..+++.+++++|++++ ++++|||+.||++|++.+ |++++| ||.++ ..|+++++ +.++|+.+|-
T Consensus 246 ~k~K~~~L~~la~~lgi~~~---qtIaVGDg~NDl~m~~~A-----GlgiA~-nAkp~Vk~~Ad~~i~~~~l~~~l~~~~ 316 (322)
T PRK11133 246 AQYKADTLTRLAQEYEIPLA---QTVAIGDGANDLPMIKAA-----GLGIAY-HAKPKVNEQAQVTIRHADLMGVLCILS 316 (322)
T ss_pred cccHHHHHHHHHHHcCCChh---hEEEEECCHHHHHHHHHC-----CCeEEe-CCCHHHHhhCCEEecCcCHHHHHHHhc
Confidence 45899999999999999988 999999999999999999 899999 88774 68999987 4678887765
Q ss_pred H
Q 040896 277 R 277 (288)
Q Consensus 277 ~ 277 (288)
.
T Consensus 317 ~ 317 (322)
T PRK11133 317 G 317 (322)
T ss_pred c
Confidence 4
No 43
>PRK09484 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; Provisional
Probab=99.22 E-value=3.3e-11 Score=99.78 Aligned_cols=56 Identities=27% Similarity=0.353 Sum_probs=48.4
Q ss_pred CHHHHHHHHHHhcCCCCCCCceeEEEcCCcccHHHHHHHHhcCCceEEEEecCCCC--ccceEEeC
Q 040896 203 DKGRALEYLLDTFGFNNASDFLPLYIGDDKTDEDAFKVIRHMGRGYPIIVSSVPRE--TKALYSLR 266 (288)
Q Consensus 203 sKg~al~~l~~~~~~~~~~~~~vv~~GDs~ND~~Ml~~~~~~~~g~~v~v~na~~~--~~A~~~~~ 266 (288)
+|..+++.++++++++++ ++++|||+.||++|++.+ |++++|+++.+. ..|+|++.
T Consensus 96 ~k~~~l~~~~~~~gl~~~---ev~~VGDs~~D~~~a~~a-----G~~~~v~~~~~~~~~~a~~v~~ 153 (183)
T PRK09484 96 NKLIAFSDLLEKLAIAPE---QVAYIGDDLIDWPVMEKV-----GLSVAVADAHPLLLPRADYVTR 153 (183)
T ss_pred cHHHHHHHHHHHhCCCHH---HEEEECCCHHHHHHHHHC-----CCeEecCChhHHHHHhCCEEec
Confidence 567889999999999877 999999999999999999 899988877543 47889885
No 44
>smart00775 LNS2 LNS2 domain. This domain is found in Saccharomyces cerevisiae protein SMP2, proteins with an N-terminal lipin domain and phosphatidylinositol transfer proteins. SMP2 is involved in plasmid maintenance and respiration. Lipin proteins are involved in adipose tissue development and insulin resistance.
Probab=99.00 E-value=7.1e-10 Score=89.36 Aligned_cols=71 Identities=13% Similarity=0.095 Sum_probs=54.8
Q ss_pred EEEEecCCccccCcCC------CCCCCCCHHHHHHHHHHhhcC-CEEEEcCCChhhHh---hhc--------CCCCeEEE
Q 040896 23 VVFLDYDGTLSPIVED------PDKAFMSDTMRMAVHEVAHFF-PTAIVSGRCLDKVS---RFV--------QLKNVVYA 84 (288)
Q Consensus 23 li~~DlDGTL~~~~~~------~~~~~i~~~~~~aL~~L~~~~-~v~i~TGR~~~~l~---~~~--------~~~~~~~i 84 (288)
++++|+||||+..+.- .....+++.+.++++++++++ +|+++|||+..... +++ ++|..+++
T Consensus 1 iVisDIDGTL~~sd~~~~~~~~~~~~~~~~~~~~a~~~l~~~G~~ivy~TGRp~~~~~~t~~~l~~~~~~~~~lp~g~li 80 (157)
T smart00775 1 IVISDIDGTITKSDVLGHVVPIIGKDWTHPGVAKLYRDIQNNGYKILYLTARPIGQADRTRSYLSQIKQDGHNLPHGPVL 80 (157)
T ss_pred CEEEecCCCCcccccccccccccccCcCCHHHHHHHHHHHHcCCeEEEEcCCcHHHHHHHHHHHHHhhhccccCCCceEE
Confidence 5899999999984200 001578999999999999996 89999999998764 433 24556899
Q ss_pred ccCceeEeC
Q 040896 85 GSHGMDIST 93 (288)
Q Consensus 85 ~~nGa~i~~ 93 (288)
+.||+.+..
T Consensus 81 ~~~g~~~~~ 89 (157)
T smart00775 81 LSPDRLFAA 89 (157)
T ss_pred EcCCcchhh
Confidence 999998864
No 45
>cd01427 HAD_like Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others, all of which use a nucleophilic aspartate in their phosphoryl transfer reaction. All members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. Members of this superfamily are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.
Probab=98.98 E-value=2e-09 Score=83.29 Aligned_cols=55 Identities=18% Similarity=0.222 Sum_probs=43.5
Q ss_pred EEEEecCCccccCcCC---CCCCCCCHHHHHHHHHHhhcC-CEEEEcCCChhhHhhhcC
Q 040896 23 VVFLDYDGTLSPIVED---PDKAFMSDTMRMAVHEVAHFF-PTAIVSGRCLDKVSRFVQ 77 (288)
Q Consensus 23 li~~DlDGTL~~~~~~---~~~~~i~~~~~~aL~~L~~~~-~v~i~TGR~~~~l~~~~~ 77 (288)
+++||+||||+..... .....+.+.+.+.|++|++++ .++++|||+...+..++.
T Consensus 1 ~~vfD~D~tl~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~i~ivS~~~~~~~~~~~~ 59 (139)
T cd01427 1 AVLFDLDGTLLDSEPGIAEIEELELYPGVKEALKELKEKGIKLALATNKSRREVLELLE 59 (139)
T ss_pred CeEEccCCceEccCccccccccCCcCcCHHHHHHHHHHCCCeEEEEeCchHHHHHHHHH
Confidence 4899999999984210 011267889999999999985 899999999888887763
No 46
>TIGR02726 phenyl_P_delta phenylphosphate carboxylase, delta subunit. Members of this protein family are the alpha subunit of phenylphosphate carboxylase. Phenol (methyl-benzene) is converted to phenylphosphate, then para-carboxylated by this four-subunit enzyme, with the release of phosphate, to 4-hydroxybenzoate. The enzyme contains neither biotin nor thiamin pyrophosphate. This delta subunit belongs to HAD family hydrolases.
Probab=98.81 E-value=4.2e-09 Score=85.79 Aligned_cols=72 Identities=19% Similarity=0.297 Sum_probs=60.6
Q ss_pred CHHHHHHHHHHhcCCCCCCCceeEEEcCCcccHHHHHHHHhcCCceEEEEecCCC--CccceEEeCC--hh-HHHHHHHH
Q 040896 203 DKGRALEYLLDTFGFNNASDFLPLYIGDDKTDEDAFKVIRHMGRGYPIIVSSVPR--ETKALYSLRD--PD-EVMSFLRR 277 (288)
Q Consensus 203 sKg~al~~l~~~~~~~~~~~~~vv~~GDs~ND~~Ml~~~~~~~~g~~v~v~na~~--~~~A~~~~~~--~~-~v~~~l~~ 277 (288)
.|...++.++++++++++ ++++|||+.||++|++.+ |++++|+||.+ +.+|++++.. .+ .+.++++.
T Consensus 82 pkp~~~~~~~~~l~~~~~---ev~~iGD~~nDi~~~~~a-----g~~~am~nA~~~lk~~A~~I~~~~~~~g~v~e~~e~ 153 (169)
T TIGR02726 82 KKTEPYAQMLEEMNISDA---EVCYVGDDLVDLSMMKRV-----GLAVAVGDAVADVKEAAAYVTTARGGHGAVREVAEL 153 (169)
T ss_pred CCHHHHHHHHHHcCcCHH---HEEEECCCHHHHHHHHHC-----CCeEECcCchHHHHHhCCEEcCCCCCCCHHHHHHHH
Confidence 677899999999999877 999999999999999999 89999999976 4689998753 33 36777777
Q ss_pred HHHHh
Q 040896 278 LARWK 282 (288)
Q Consensus 278 ~~~~~ 282 (288)
++..+
T Consensus 154 il~~~ 158 (169)
T TIGR02726 154 ILKAQ 158 (169)
T ss_pred HHHhc
Confidence 77644
No 47
>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase. Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.
Probab=98.66 E-value=3.9e-08 Score=75.83 Aligned_cols=52 Identities=12% Similarity=0.045 Sum_probs=41.0
Q ss_pred EEEEEecCCccccCcCCC-CCCCCCHHHHHHHHHHhhcC-CEEEEcCCChhhHh
Q 040896 22 IVVFLDYDGTLSPIVEDP-DKAFMSDTMRMAVHEVAHFF-PTAIVSGRCLDKVS 73 (288)
Q Consensus 22 ~li~~DlDGTL~~~~~~~-~~~~i~~~~~~aL~~L~~~~-~v~i~TGR~~~~l~ 73 (288)
|+|++|+||||+.....+ ....+.+.++++|++|++.+ .|+++|||+.....
T Consensus 2 K~i~~DiDGTL~~~~~~~y~~~~~~~~~ie~L~~l~~~G~~IiiaTGR~~~~~~ 55 (126)
T TIGR01689 2 KRLVMDLDNTITLTENGDYANVAPILAVIEKLRHYKALGFEIVISSSRNMRTYE 55 (126)
T ss_pred CEEEEeCCCCcccCCCCcccccccCHHHHHHHHHHHHCCCEEEEECCCCchhhh
Confidence 689999999999743111 12357789999999998875 89999999998766
No 48
>TIGR01670 YrbI-phosphatas 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family. The Methanosarcina sequence is distinctive in that it is linked to an N-terminal cytidylyltransferase domain (pfam02348) and is annotated as acylneuraminate cytidylyltransferase. This may give some clue as the function of these phosphatases. Several eukaryotic sequences scoring between trusted and noise are also closely related to this function such as the CMP-N-acetylneuraminic acid synthetase from mouse, but in these cases the phosphatase domain is clearly inactive as many of the active site residues are not conserved.
Probab=98.60 E-value=4.3e-08 Score=78.83 Aligned_cols=73 Identities=22% Similarity=0.225 Sum_probs=62.6
Q ss_pred CHHHHHHHHHHhcCCCCCCCceeEEEcCCcccHHHHHHHHhcCCceEEEEecCCCC--ccceEEeCCh--hH-HHHHHHH
Q 040896 203 DKGRALEYLLDTFGFNNASDFLPLYIGDDKTDEDAFKVIRHMGRGYPIIVSSVPRE--TKALYSLRDP--DE-VMSFLRR 277 (288)
Q Consensus 203 sKg~al~~l~~~~~~~~~~~~~vv~~GDs~ND~~Ml~~~~~~~~g~~v~v~na~~~--~~A~~~~~~~--~~-v~~~l~~ 277 (288)
+|..+++.++++++++++ +++++||+.||++|++.+ |.+++|.++.+. ..|++++..+ +| +++++++
T Consensus 76 ~k~~~~~~~~~~~~~~~~---~~~~vGDs~~D~~~~~~a-----g~~~~v~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~ 147 (154)
T TIGR01670 76 NKLIAFSDILEKLALAPE---NVAYIGDDLIDWPVMEKV-----GLSVAVADAHPLLIPRADYVTRIAGGRGAVREVCEL 147 (154)
T ss_pred chHHHHHHHHHHcCCCHH---HEEEECCCHHHHHHHHHC-----CCeEecCCcCHHHHHhCCEEecCCCCCcHHHHHHHH
Confidence 688999999999999887 999999999999999999 899999998653 5788888743 44 9999999
Q ss_pred HHHHhh
Q 040896 278 LARWKK 283 (288)
Q Consensus 278 ~~~~~~ 283 (288)
++....
T Consensus 148 ~~~~~~ 153 (154)
T TIGR01670 148 LLLAQG 153 (154)
T ss_pred HHHhhC
Confidence 987653
No 49
>TIGR01684 viral_ppase viral phosphatase. These proteins also include an N-terminal domain (ca. 125 aas) that is unique to this clade.
Probab=98.59 E-value=1.4e-07 Score=82.31 Aligned_cols=71 Identities=18% Similarity=0.056 Sum_probs=54.8
Q ss_pred CcEEEEEecCCccccCcCCCCCCCC-CHHHHHHHHHHhhcC-CEEEEcCCChhhHhhhc---CCCC-eEEEccCceeEeC
Q 040896 20 KKIVVFLDYDGTLSPIVEDPDKAFM-SDTMRMAVHEVAHFF-PTAIVSGRCLDKVSRFV---QLKN-VVYAGSHGMDIST 93 (288)
Q Consensus 20 ~~~li~~DlDGTL~~~~~~~~~~~i-~~~~~~aL~~L~~~~-~v~i~TGR~~~~l~~~~---~~~~-~~~i~~nGa~i~~ 93 (288)
..++|+|||||||++.. ..-+| +|.+.++|.+|++.+ .++|+|+++...+.+.+ |+.. +..|.++|.....
T Consensus 125 ~~kvIvFDLDgTLi~~~---~~v~irdPgV~EaL~~LkekGikLaIaTS~~Re~v~~~L~~lGLd~YFdvIIs~Gdv~~~ 201 (301)
T TIGR01684 125 PPHVVVFDLDSTLITDE---EPVRIRDPRIYDSLTELKKRGCILVLWSYGDRDHVVESMRKVKLDRYFDIIISGGHKAEE 201 (301)
T ss_pred cceEEEEecCCCCcCCC---CccccCCHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHcCCCcccCEEEECCccccC
Confidence 56899999999999942 11224 499999999999996 89999999998877654 5653 3477778887654
No 50
>COG1778 Low specificity phosphatase (HAD superfamily) [General function prediction only]
Probab=98.56 E-value=2.6e-08 Score=78.02 Aligned_cols=74 Identities=22% Similarity=0.249 Sum_probs=63.2
Q ss_pred CCCHHHHHHHHHHhcCCCCCCCceeEEEcCCcccHHHHHHHHhcCCceEEEEecCCCC--ccceEEeCC---hhHHHHHH
Q 040896 201 DWDKGRALEYLLDTFGFNNASDFLPLYIGDDKTDEDAFKVIRHMGRGYPIIVSSVPRE--TKALYSLRD---PDEVMSFL 275 (288)
Q Consensus 201 ~~sKg~al~~l~~~~~~~~~~~~~vv~~GDs~ND~~Ml~~~~~~~~g~~v~v~na~~~--~~A~~~~~~---~~~v~~~l 275 (288)
--+|-.+.+.|++++++..+ ++.++||+.||+|+|+.+ |+++++.+|.+. .+|+||+.. ...|.+++
T Consensus 81 ~~dK~~a~~~L~~~~~l~~e---~~ayiGDD~~Dlpvm~~v-----Gls~a~~dAh~~v~~~a~~Vt~~~GG~GAvREv~ 152 (170)
T COG1778 81 ISDKLAAFEELLKKLNLDPE---EVAYVGDDLVDLPVMEKV-----GLSVAVADAHPLLKQRADYVTSKKGGEGAVREVC 152 (170)
T ss_pred hHhHHHHHHHHHHHhCCCHH---HhhhhcCccccHHHHHHc-----CCcccccccCHHHHHhhHhhhhccCcchHHHHHH
Confidence 56999999999999999988 999999999999999999 999999999875 689999862 44477777
Q ss_pred HHHHHHh
Q 040896 276 RRLARWK 282 (288)
Q Consensus 276 ~~~~~~~ 282 (288)
+-++..+
T Consensus 153 dlil~aq 159 (170)
T COG1778 153 DLILQAQ 159 (170)
T ss_pred HHHHHcc
Confidence 6665544
No 51
>PHA03398 viral phosphatase superfamily protein; Provisional
Probab=98.39 E-value=8e-07 Score=77.65 Aligned_cols=71 Identities=14% Similarity=0.011 Sum_probs=54.9
Q ss_pred CCcEEEEEecCCccccCcCCCCCCCC---CHHHHHHHHHHhhcC-CEEEEcCCChhhHhhhc---CCCC-eEEEccCcee
Q 040896 19 GKKIVVFLDYDGTLSPIVEDPDKAFM---SDTMRMAVHEVAHFF-PTAIVSGRCLDKVSRFV---QLKN-VVYAGSHGMD 90 (288)
Q Consensus 19 ~~~~li~~DlDGTL~~~~~~~~~~~i---~~~~~~aL~~L~~~~-~v~i~TGR~~~~l~~~~---~~~~-~~~i~~nGa~ 90 (288)
...++|+|||||||++. ...+ +|.+.++|.+|++.+ .++|+|+++...+...+ ++.. +..|.++|..
T Consensus 126 ~~~~~i~~D~D~TL~~~-----~~~v~irdp~V~EtL~eLkekGikLaIvTNg~Re~v~~~Le~lgL~~yFDvII~~g~i 200 (303)
T PHA03398 126 EIPHVIVFDLDSTLITD-----EEPVRIRDPFVYDSLDELKERGCVLVLWSYGNREHVVHSLKETKLEGYFDIIICGGRK 200 (303)
T ss_pred eeccEEEEecCCCccCC-----CCccccCChhHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHcCCCccccEEEECCCc
Confidence 35689999999999993 4455 689999999999996 89999988887776654 5543 3467777876
Q ss_pred EeCC
Q 040896 91 ISTP 94 (288)
Q Consensus 91 i~~~ 94 (288)
....
T Consensus 201 ~~k~ 204 (303)
T PHA03398 201 AGEY 204 (303)
T ss_pred cccc
Confidence 6654
No 52
>TIGR01457 HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydrolase, TIGR01457. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram positive (low-GC) bacteria. Sequences found in this model are annotated variously as related to NagD or 4-nitrophenyl phosphatase, and this hypothetical equivalog, of all of those within the Class IIA subfamily, is most closely related to the E. coli NagD enzyme and the PGP_euk equivalog (TIGR01452). However, there is presently no evidence that this hypothetical equivalog has the same function of either those.
Probab=98.05 E-value=4.9e-06 Score=72.26 Aligned_cols=64 Identities=19% Similarity=0.198 Sum_probs=49.6
Q ss_pred EEEEEecCCccccCcCCCCCCCCCHHHHHHHHHHhhcC-CEEEEcC---CChhhHhhhc---CCC--CeEEEccCceeE
Q 040896 22 IVVFLDYDGTLSPIVEDPDKAFMSDTMRMAVHEVAHFF-PTAIVSG---RCLDKVSRFV---QLK--NVVYAGSHGMDI 91 (288)
Q Consensus 22 ~li~~DlDGTL~~~~~~~~~~~i~~~~~~aL~~L~~~~-~v~i~TG---R~~~~l~~~~---~~~--~~~~i~~nGa~i 91 (288)
++++||+||||++ .+..++ .+.++|++|++++ +|+++|| |+...+...+ |++ ..-+++.+|+.+
T Consensus 2 ~~~~~D~DGtl~~-----~~~~i~-~a~~~l~~l~~~g~~~~~~Tnn~~r~~~~~~~~l~~~g~~~~~~~iit~~~~~~ 74 (249)
T TIGR01457 2 KGYLIDLDGTMYK-----GKERIP-EAETFVHELQKRDIPYLFVTNNSTRTPESVAEMLASFDIPATLETVFTASMATA 74 (249)
T ss_pred CEEEEeCCCceEc-----CCeeCc-CHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHcCCCCChhhEeeHHHHHH
Confidence 6899999999998 344454 7999999999995 8999995 8888877754 442 344788887754
No 53
>COG0546 Gph Predicted phosphatases [General function prediction only]
Probab=98.03 E-value=3.9e-05 Score=65.31 Aligned_cols=69 Identities=20% Similarity=0.237 Sum_probs=51.2
Q ss_pred CHHHHHHHHHHhcCCCCCCCceeEEEcCCcccHHHHHHHHhcCCceEEEEecCCC----CccceEEeCChhHHHHHHH
Q 040896 203 DKGRALEYLLDTFGFNNASDFLPLYIGDDKTDEDAFKVIRHMGRGYPIIVSSVPR----ETKALYSLRDPDEVMSFLR 276 (288)
Q Consensus 203 sKg~al~~l~~~~~~~~~~~~~vv~~GDs~ND~~Ml~~~~~~~~g~~v~v~na~~----~~~A~~~~~~~~~v~~~l~ 276 (288)
-.-..+..+++.++++++ +++++||+.+|+.|=+.+. .. ..+|..|.... ...+++++.+..++...|.
T Consensus 146 P~P~~l~~~~~~~~~~~~---~~l~VGDs~~Di~aA~~Ag-~~-~v~v~~g~~~~~~l~~~~~d~vi~~~~el~~~l~ 218 (220)
T COG0546 146 PDPEPLLLLLEKLGLDPE---EALMVGDSLNDILAAKAAG-VP-AVGVTWGYNSREELAQAGADVVIDSLAELLALLA 218 (220)
T ss_pred cCHHHHHHHHHHhCCChh---heEEECCCHHHHHHHHHcC-CC-EEEEECCCCCCcchhhcCCCEEECCHHHHHHHHh
Confidence 346788899999998866 9999999999999999983 10 13444443211 2469999999999888775
No 54
>COG0560 SerB Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=98.00 E-value=8.6e-06 Score=68.90 Aligned_cols=47 Identities=26% Similarity=0.328 Sum_probs=42.8
Q ss_pred CCCHHHHHHHHHHhcCCCCCCCceeEEEcCCcccHHHHHHHHhcCCceEEEEecC
Q 040896 201 DWDKGRALEYLLDTFGFNNASDFLPLYIGDDKTDEDAFKVIRHMGRGYPIIVSSV 255 (288)
Q Consensus 201 ~~sKg~al~~l~~~~~~~~~~~~~vv~~GDs~ND~~Ml~~~~~~~~g~~v~v~na 255 (288)
+-+|..+++.+++.+|++.+ +++++|||.||+|||+.+ |+++++...
T Consensus 142 ~~~K~~~l~~~~~~~g~~~~---~~~a~gDs~nDlpml~~a-----g~~ia~n~~ 188 (212)
T COG0560 142 GEGKAKALRELAAELGIPLE---ETVAYGDSANDLPMLEAA-----GLPIAVNPK 188 (212)
T ss_pred cchHHHHHHHHHHHcCCCHH---HeEEEcCchhhHHHHHhC-----CCCeEeCcC
Confidence 46899999999999999987 999999999999999999 888887633
No 55
>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458. This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published.
Probab=97.89 E-value=1.3e-05 Score=69.96 Aligned_cols=64 Identities=16% Similarity=0.118 Sum_probs=47.1
Q ss_pred HHHHHHHHHHhcCCCCCCCceeEEEcCCc-ccHHHHHHHHhcCCc-eEEEEecCC-----C---CccceEEeCChhHHHH
Q 040896 204 KGRALEYLLDTFGFNNASDFLPLYIGDDK-TDEDAFKVIRHMGRG-YPIIVSSVP-----R---ETKALYSLRDPDEVMS 273 (288)
Q Consensus 204 Kg~al~~l~~~~~~~~~~~~~vv~~GDs~-ND~~Ml~~~~~~~~g-~~v~v~na~-----~---~~~A~~~~~~~~~v~~ 273 (288)
+....+.++++++.+++ +++++||+. +|+.+=+.+ | .++.|..+. . +..+++++++..++.+
T Consensus 181 ~p~~~~~~~~~~~~~~~---~~~~vGD~~~~Di~~a~~~-----G~~~i~v~~G~~~~~~~~~~~~~pd~~~~sl~el~~ 252 (257)
T TIGR01458 181 SKTFFLEALRATGCEPE---EAVMIGDDCRDDVGGAQDC-----GMRGIQVRTGKYRPSDEEKINVPPDLTCDSLPHAVD 252 (257)
T ss_pred CHHHHHHHHHHhCCChh---hEEEECCCcHHHHHHHHHc-----CCeEEEECCCCCChHHhcccCCCCCEEECCHHHHHH
Confidence 45677888888998877 999999995 898877766 4 456664431 1 1247788888888877
Q ss_pred HH
Q 040896 274 FL 275 (288)
Q Consensus 274 ~l 275 (288)
+|
T Consensus 253 ~l 254 (257)
T TIGR01458 253 LI 254 (257)
T ss_pred HH
Confidence 54
No 56
>TIGR01681 HAD-SF-IIIC HAD-superfamily phosphatase, subfamily IIIC. No member of this subfamily is characterized with respect to function, however the MDP-1 protein is a characterized phosphatase. All of the characterized enzymes within subfamily III are phosphatases, and all of the active site residues characteristic of HAD-superfamily phosphatases are present in subfamily IIIC.
Probab=97.89 E-value=2.1e-05 Score=61.07 Aligned_cols=55 Identities=15% Similarity=-0.005 Sum_probs=41.0
Q ss_pred EEEEEecCCccccCcCCCCCC-------CCCHHHHHHHHHHhhcC-CEEEEcCC-ChhhHhhhc
Q 040896 22 IVVFLDYDGTLSPIVEDPDKA-------FMSDTMRMAVHEVAHFF-PTAIVSGR-CLDKVSRFV 76 (288)
Q Consensus 22 ~li~~DlDGTL~~~~~~~~~~-------~i~~~~~~aL~~L~~~~-~v~i~TGR-~~~~l~~~~ 76 (288)
|++++||||||++........ .+.+.+.+.|++|++++ +++++|++ +.......+
T Consensus 1 kli~~DlD~Tl~~~~~~~~~~~~~~~~~~~~~gv~e~L~~Lk~~g~~l~i~Sn~~~~~~~~~~l 64 (128)
T TIGR01681 1 KVIVFDLDNTLWTGENIVVGEDPIIDLEVTIKEIRDKLQTLKKNGFLLALASYNDDPHVAYELL 64 (128)
T ss_pred CEEEEeCCCCCCCCCcccccCCcchhhHHHHHHHHHHHHHHHHCCeEEEEEeCCCCHHHHHHHH
Confidence 689999999999863110011 25679999999999886 89999999 666555555
No 57
>TIGR01672 AphA HAD superfamily (subfamily IIIB) phosphatase, TIGR01672. Supporting evidence for the inclusion in the HAD superfamily, whose phosphatase members are magnesium dependent, is the inhibition by EDTA and calcium ions, and stimulation by magnesium ion.
Probab=97.85 E-value=5.6e-05 Score=64.92 Aligned_cols=71 Identities=17% Similarity=0.163 Sum_probs=46.6
Q ss_pred HHHHHHhhcCC-cEEEEEecCCccccCcCC--CCCCCCCH---------------------------HHHHHHHHHhhcC
Q 040896 10 FDRMVAAAKGK-KIVVFLDYDGTLSPIVED--PDKAFMSD---------------------------TMRMAVHEVAHFF 59 (288)
Q Consensus 10 ~~~~~~~~~~~-~~li~~DlDGTL~~~~~~--~~~~~i~~---------------------------~~~~aL~~L~~~~ 59 (288)
.|+|......+ ...|+|||||||++.... ......++ ...++|..|++++
T Consensus 51 ~~~~~~~~~~~~p~aViFDlDgTLlDSs~~~~~G~~~~s~~~~~~l~g~~~w~~~~~~~~~~s~p~~~a~elL~~l~~~G 130 (237)
T TIGR01672 51 VAQIENSLEGRPPIAVSFDIDDTVLFSSPGFWRGKKTFSPGSEDYLKNQVFWEKVNNGWDEFSIPKEVARQLIDMHQRRG 130 (237)
T ss_pred HHHHHHhcCCCCCeEEEEeCCCccccCcHHHhCCcccCCHHHhhhhcChHHHHHHHHhcccCCcchhHHHHHHHHHHHCC
Confidence 57777776544 459999999999986431 00011122 2788899999885
Q ss_pred -CEEEEcCC----Chh---hHhhhcCCCC
Q 040896 60 -PTAIVSGR----CLD---KVSRFVQLKN 80 (288)
Q Consensus 60 -~v~i~TGR----~~~---~l~~~~~~~~ 80 (288)
.++++|+| +.. .+.+.++++.
T Consensus 131 ~~i~iVTnr~~~k~~~~a~~ll~~lGi~~ 159 (237)
T TIGR01672 131 DAIFFVTGRTPGKTDTVSKTLAKNFHIPA 159 (237)
T ss_pred CEEEEEeCCCCCcCHHHHHHHHHHhCCch
Confidence 89999999 322 3334456654
No 58
>PRK10444 UMP phosphatase; Provisional
Probab=97.82 E-value=2e-05 Score=68.38 Aligned_cols=49 Identities=16% Similarity=0.120 Sum_probs=41.3
Q ss_pred cEEEEEecCCccccCcCCCCCCCCCHHHHHHHHHHhhcC-CEEEEcCCChhhHhhh
Q 040896 21 KIVVFLDYDGTLSPIVEDPDKAFMSDTMRMAVHEVAHFF-PTAIVSGRCLDKVSRF 75 (288)
Q Consensus 21 ~~li~~DlDGTL~~~~~~~~~~~i~~~~~~aL~~L~~~~-~v~i~TGR~~~~l~~~ 75 (288)
.++++||+||||+. +. .+.|.+.++|++|++.+ +++++|+|+......+
T Consensus 1 ~~~v~~DlDGtL~~-----~~-~~~p~a~~~l~~L~~~g~~~~~~Tn~~~~~~~~~ 50 (248)
T PRK10444 1 IKNVICDIDGVLMH-----DN-VAVPGAAEFLHRILDKGLPLVLLTNYPSQTGQDL 50 (248)
T ss_pred CcEEEEeCCCceEe-----CC-eeCccHHHHHHHHHHCCCeEEEEeCCCCCCHHHH
Confidence 36899999999998 33 67889999999999985 8999999999655443
No 59
>TIGR01670 YrbI-phosphatas 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family. The Methanosarcina sequence is distinctive in that it is linked to an N-terminal cytidylyltransferase domain (pfam02348) and is annotated as acylneuraminate cytidylyltransferase. This may give some clue as the function of these phosphatases. Several eukaryotic sequences scoring between trusted and noise are also closely related to this function such as the CMP-N-acetylneuraminic acid synthetase from mouse, but in these cases the phosphatase domain is clearly inactive as many of the active site residues are not conserved.
Probab=97.70 E-value=3.1e-05 Score=62.11 Aligned_cols=56 Identities=18% Similarity=0.098 Sum_probs=38.2
Q ss_pred cEEEEEecCCccccCcC--CCCCCCCCHH---HHHHHHHHhhcC-CEEEEcCCChhhHhhhc
Q 040896 21 KIVVFLDYDGTLSPIVE--DPDKAFMSDT---MRMAVHEVAHFF-PTAIVSGRCLDKVSRFV 76 (288)
Q Consensus 21 ~~li~~DlDGTL~~~~~--~~~~~~i~~~---~~~aL~~L~~~~-~v~i~TGR~~~~l~~~~ 76 (288)
.|++|+|+||||++... ......+..- ...+|++|++++ .++|+||++...+...+
T Consensus 1 ~~~~~~D~Dgtl~~~~~~~~~~~~~~~~~~~~~~~~i~~Lk~~G~~i~IvTn~~~~~~~~~l 62 (154)
T TIGR01670 1 IRLLILDVDGVLTDGKIYYTNNGEEIKAFNVRDGYGIRCALKSGIEVAIITGRKAKLVEDRC 62 (154)
T ss_pred CeEEEEeCceeEEcCeEEECCCCcEEEEEechhHHHHHHHHHCCCEEEEEECCCCHHHHHHH
Confidence 37999999999998311 0011111111 113899999885 89999999998777765
No 60
>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family. This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.
Probab=97.68 E-value=4.1e-05 Score=67.60 Aligned_cols=44 Identities=14% Similarity=0.090 Sum_probs=36.1
Q ss_pred cEEEEEecCCccccCcCCCCCCCCCHHHHHHHHHHhhcC-CEEEEcCCChh
Q 040896 21 KIVVFLDYDGTLSPIVEDPDKAFMSDTMRMAVHEVAHFF-PTAIVSGRCLD 70 (288)
Q Consensus 21 ~~li~~DlDGTL~~~~~~~~~~~i~~~~~~aL~~L~~~~-~v~i~TGR~~~ 70 (288)
.++|+||+||||++ +.. .-+.+.++|++|++.+ +|+++|+|+..
T Consensus 2 ~~~~~~D~DGtl~~-----~~~-~~~ga~e~l~~L~~~g~~~~~~Tnns~~ 46 (279)
T TIGR01452 2 AQGFIFDCDGVLWL-----GER-VVPGAPELLDRLARAGKAALFVTNNSTK 46 (279)
T ss_pred ccEEEEeCCCceEc-----CCe-eCcCHHHHHHHHHHCCCeEEEEeCCCCC
Confidence 47899999999998 333 4455999999999985 89999998754
No 61
>TIGR01664 DNA-3'-Pase DNA 3'-phosphatase. The central phosphatase domain is a member of the IIIA subfamily (TIGR01662) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. As is common in this superfamily, the enzyme is magnesium dependent. A difference between this enzyme and other HAD-superfamily phosphatases is in the third conserved catalytic motif which usually contains two conserved aspartate residues believed to be involved in binding the magnesium ion. Here, the second aspartate is usually replaced by an arginine residue which may indicate an interaction with the phosphate backbone of the substrate. Alternatively, there is an additional conserved aspartate downstream of the ususal site which may indicate slightly different fold in this region.
Probab=97.68 E-value=0.00011 Score=59.64 Aligned_cols=49 Identities=16% Similarity=0.113 Sum_probs=35.3
Q ss_pred cEEEEEecCCccccCcCC------CCCCC-CCHHHHHHHHHHhhcC-CEEEEcCCCh
Q 040896 21 KIVVFLDYDGTLSPIVED------PDKAF-MSDTMRMAVHEVAHFF-PTAIVSGRCL 69 (288)
Q Consensus 21 ~~li~~DlDGTL~~~~~~------~~~~~-i~~~~~~aL~~L~~~~-~v~i~TGR~~ 69 (288)
.|++++|+||||+..... +.+=+ +-+.+.++|++|++.+ .++|+|..+.
T Consensus 13 ~k~~~~D~Dgtl~~~~~~~~~~~~~~~~~~~~pgv~e~L~~Lk~~G~~l~I~TN~~~ 69 (166)
T TIGR01664 13 SKVAAFDLDGTLITTRSGKVFPTSASDWRFLYPEIPAKLQELDDEGYKIVIFTNQSG 69 (166)
T ss_pred CcEEEEeCCCceEecCCCCcccCChHHeEEecCCHHHHHHHHHHCCCEEEEEeCCcc
Confidence 588999999999974211 00001 2377899999999885 8999997654
No 62
>TIGR01662 HAD-SF-IIIA HAD-superfamily hydrolase, subfamily IIIA. In the case of histidinol phosphatase and PNK-3'-phosphatase, this model represents a domain of a bifunctional system. In the histidinol phosphatase HisB, a C-terminal domain is an imidazoleglycerol-phosphate dehydratase which catalyzes a related step in histidine biosynthesis. In PNK-3'-phosphatase, N- and C-terminal domains constitute the polynucleotide kinase and DNA-binding components of the enzyme.
Probab=97.62 E-value=4.8e-05 Score=59.16 Aligned_cols=47 Identities=30% Similarity=0.307 Sum_probs=36.9
Q ss_pred EEEEEecCCccccCc--C-CCCCCCCCHHHHHHHHHHhhcC-CEEEEcCCC
Q 040896 22 IVVFLDYDGTLSPIV--E-DPDKAFMSDTMRMAVHEVAHFF-PTAIVSGRC 68 (288)
Q Consensus 22 ~li~~DlDGTL~~~~--~-~~~~~~i~~~~~~aL~~L~~~~-~v~i~TGR~ 68 (288)
|+++||+||||++.. . ......+.+.+.++|+.|++.+ .++++|+++
T Consensus 1 k~~~~D~dgtL~~~~~~~~~~~~~~~~~~v~~~l~~L~~~g~~l~i~Sn~~ 51 (132)
T TIGR01662 1 KGVVLDLDGTLTDDVPYVDDEDERILYPEVPDALAELKEAGYKVVIVTNQS 51 (132)
T ss_pred CEEEEeCCCceecCCCCCCCHHHheeCCCHHHHHHHHHHCCCEEEEEECCc
Confidence 589999999999521 0 0123467789999999999885 999999998
No 63
>PLN02645 phosphoglycolate phosphatase
Probab=97.62 E-value=5.2e-05 Score=68.02 Aligned_cols=46 Identities=9% Similarity=0.105 Sum_probs=38.6
Q ss_pred CcEEEEEecCCccccCcCCCCCCCCCHHHHHHHHHHhhcC-CEEEEcCCChhh
Q 040896 20 KKIVVFLDYDGTLSPIVEDPDKAFMSDTMRMAVHEVAHFF-PTAIVSGRCLDK 71 (288)
Q Consensus 20 ~~~li~~DlDGTL~~~~~~~~~~~i~~~~~~aL~~L~~~~-~v~i~TGR~~~~ 71 (288)
+.++++||+||||+. .. .+-+.+.++|++|++++ +++++|+|+...
T Consensus 27 ~~~~~~~D~DGtl~~-----~~-~~~~ga~e~l~~lr~~g~~~~~~TN~~~~~ 73 (311)
T PLN02645 27 SVETFIFDCDGVIWK-----GD-KLIEGVPETLDMLRSMGKKLVFVTNNSTKS 73 (311)
T ss_pred hCCEEEEeCcCCeEe-----CC-ccCcCHHHHHHHHHHCCCEEEEEeCCCCCC
Confidence 368999999999998 33 45578899999999986 899999999443
No 64
>TIGR00338 serB phosphoserine phosphatase SerB. Phosphoserine phosphatase catalyzes the reaction 3-phospho-serine + H2O = L-serine + phosphate. It catalyzes the last of three steps in the biosynthesis of serine from D-3-phosphoglycerate. Note that this enzyme acts on free phosphoserine, not on phosphoserine residues of phosphoproteins.
Probab=97.32 E-value=0.00014 Score=61.49 Aligned_cols=57 Identities=25% Similarity=0.307 Sum_probs=48.0
Q ss_pred CHHHHHHHHHHhcCCCCCCCceeEEEcCCcccHHHHHHHHhcCCceEEEEecCCC--CccceEEeCCh
Q 040896 203 DKGRALEYLLDTFGFNNASDFLPLYIGDDKTDEDAFKVIRHMGRGYPIIVSSVPR--ETKALYSLRDP 268 (288)
Q Consensus 203 sKg~al~~l~~~~~~~~~~~~~vv~~GDs~ND~~Ml~~~~~~~~g~~v~v~na~~--~~~A~~~~~~~ 268 (288)
.|...++.++++++++++ +++++|||.+|+++.+.+ |++++++ +.+ +.+|++++.+.
T Consensus 152 ~k~~~~~~~~~~~~~~~~---~~i~iGDs~~Di~aa~~a-----g~~i~~~-~~~~~~~~a~~~i~~~ 210 (219)
T TIGR00338 152 YKGKTLLILLRKEGISPE---NTVAVGDGANDLSMIKAA-----GLGIAFN-AKPKLQQKADICINKK 210 (219)
T ss_pred ccHHHHHHHHHHcCCCHH---HEEEEECCHHHHHHHHhC-----CCeEEeC-CCHHHHHhchhccCCC
Confidence 489999999999999877 999999999999999999 7888875 333 25788887754
No 65
>TIGR01488 HAD-SF-IB Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like. Subfamily IA includes the enzyme phosphoserine phosphatase (TIGR00338) as well as three hypothetical equivalogs. Many members of these hypothetical equivalogs have been annotated as PSPase-like or PSPase-family proteins. In particular, the hypothetical equivalog which appears to be most closely related to PSPase contains only Archaea (while TIGR00338 contains only eukaryotes and bacteria) of which some are annotated as PSPases. Although this is a reasonable conjecture, none of these sequences has sufficient evidence for this assignment. If such should be found, this model should be retired while the PSPase model should be broadened to include these sequences.
Probab=97.25 E-value=0.00018 Score=58.60 Aligned_cols=41 Identities=24% Similarity=0.276 Sum_probs=36.4
Q ss_pred eCCCCCCHHHHHHHHHHhcCCCCCCCceeEEEcCCcccHHHHHHH
Q 040896 197 RPCIDWDKGRALEYLLDTFGFNNASDFLPLYIGDDKTDEDAFKVI 241 (288)
Q Consensus 197 ~~~~~~sKg~al~~l~~~~~~~~~~~~~vv~~GDs~ND~~Ml~~~ 241 (288)
.+. +.+|+.+++.+++.++++.+ +++++|||.||++|++.+
T Consensus 137 ~~~-~~~K~~~l~~~~~~~~~~~~---~~~~iGDs~~D~~~~~~a 177 (177)
T TIGR01488 137 NPE-GECKGKVLKELLEESKITLK---KIIAVGDSVNDLPMLKLA 177 (177)
T ss_pred cCC-cchHHHHHHHHHHHhCCCHH---HEEEEeCCHHHHHHHhcC
Confidence 466 78999999999999988876 999999999999999863
No 66
>PRK10671 copA copper exporting ATPase; Provisional
Probab=97.24 E-value=0.00037 Score=70.72 Aligned_cols=69 Identities=19% Similarity=0.173 Sum_probs=53.8
Q ss_pred EEEEeCCCCCCHHHHHHHHHHhcCCCCCCCceeEEEcCCcccHHHHHHHHhcCCceEEEEecCCCC--ccceEEe--CCh
Q 040896 193 VMEIRPCIDWDKGRALEYLLDTFGFNNASDFLPLYIGDDKTDEDAFKVIRHMGRGYPIIVSSVPRE--TKALYSL--RDP 268 (288)
Q Consensus 193 ~ieI~~~~~~sKg~al~~l~~~~~~~~~~~~~vv~~GDs~ND~~Ml~~~~~~~~g~~v~v~na~~~--~~A~~~~--~~~ 268 (288)
+.++.|. .|..+++.+.++ ++ .++++||+.||.+|++.+ |.+|+|||+.+. ..|++++ ++.
T Consensus 693 ~~~~~p~---~K~~~i~~l~~~----~~---~v~~vGDg~nD~~al~~A-----gvgia~g~g~~~a~~~ad~vl~~~~~ 757 (834)
T PRK10671 693 IAGVLPD---GKAEAIKRLQSQ----GR---QVAMVGDGINDAPALAQA-----DVGIAMGGGSDVAIETAAITLMRHSL 757 (834)
T ss_pred EeCCCHH---HHHHHHHHHhhc----CC---EEEEEeCCHHHHHHHHhC-----CeeEEecCCCHHHHHhCCEEEecCCH
Confidence 3445555 698888887543 44 899999999999999999 899999998663 5788776 367
Q ss_pred hHHHHHHH
Q 040896 269 DEVMSFLR 276 (288)
Q Consensus 269 ~~v~~~l~ 276 (288)
+++..+++
T Consensus 758 ~~i~~~i~ 765 (834)
T PRK10671 758 MGVADALA 765 (834)
T ss_pred HHHHHHHH
Confidence 78888775
No 67
>TIGR01491 HAD-SF-IB-PSPlk HAD-superfamily, subfamily-IB PSPase-like hydrolase, archaeal. This hypothetical equivalog is a member of the IB subfamily (TIGR01488) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this alignment are all from archaeal species. The phylogenetically closest group of sequences to these are phosphoserine phosphatases (TIGR00338). There are no known archaeal phosphoserine phosphatases, and no archaea fall within TIGR00338. It is likely, then, that This model represents the archaeal branch of the PSPase equivalog.
Probab=97.20 E-value=0.00041 Score=57.61 Aligned_cols=46 Identities=26% Similarity=0.302 Sum_probs=41.3
Q ss_pred CCHHHHHHHHHHhcCCCCCCCceeEEEcCCcccHHHHHHHHhcCCceEEEEecC
Q 040896 202 WDKGRALEYLLDTFGFNNASDFLPLYIGDDKTDEDAFKVIRHMGRGYPIIVSSV 255 (288)
Q Consensus 202 ~sKg~al~~l~~~~~~~~~~~~~vv~~GDs~ND~~Ml~~~~~~~~g~~v~v~na 255 (288)
-+|+.+++.+++.++++++ +++++|||.+|++|++.+ |+++++...
T Consensus 146 ~~k~~~~~~~~~~~~~~~~---~~i~iGDs~~D~~~a~~a-----g~~~a~~~~ 191 (201)
T TIGR01491 146 DNKGEAVERLKRELNPSLT---ETVAVGDSKNDLPMFEVA-----DISISLGDE 191 (201)
T ss_pred ccHHHHHHHHHHHhCCCHH---HEEEEcCCHhHHHHHHhc-----CCeEEECCC
Confidence 4799999999999999877 999999999999999999 899888643
No 68
>TIGR01116 ATPase-IIA1_Ca sarco/endoplasmic reticulum calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1, the latter of which is modelled by TIGR01522.
Probab=97.17 E-value=0.00054 Score=70.15 Aligned_cols=68 Identities=19% Similarity=0.239 Sum_probs=49.4
Q ss_pred EEEEeCCCCCCHHHHHHHHHHhcCCCCCCCceeEEEcCCcccHHHHHHHHhcCCceEEEEecCCC--CccceEEeCC--h
Q 040896 193 VMEIRPCIDWDKGRALEYLLDTFGFNNASDFLPLYIGDDKTDEDAFKVIRHMGRGYPIIVSSVPR--ETKALYSLRD--P 268 (288)
Q Consensus 193 ~ieI~~~~~~sKg~al~~l~~~~~~~~~~~~~vv~~GDs~ND~~Ml~~~~~~~~g~~v~v~na~~--~~~A~~~~~~--~ 268 (288)
+-...|. .|...++.+.+ . ++ .|.++||+.||.+||+.+ +.||+|+++.+ +..|++++.+ .
T Consensus 611 ~ar~~P~---~K~~iV~~lq~-~---g~---~va~iGDG~ND~~alk~A-----dVGia~g~g~~~ak~aAD~vl~dd~f 675 (917)
T TIGR01116 611 FSRVEPS---HKSELVELLQE-Q---GE---IVAMTGDGVNDAPALKKA-----DIGIAMGSGTEVAKEASDMVLADDNF 675 (917)
T ss_pred EEecCHH---HHHHHHHHHHh-c---CC---eEEEecCCcchHHHHHhC-----CeeEECCCCcHHHHHhcCeEEccCCH
Confidence 3344455 68777776543 2 33 777899999999999999 79999998865 3589999876 4
Q ss_pred hHHHHHH
Q 040896 269 DEVMSFL 275 (288)
Q Consensus 269 ~~v~~~l 275 (288)
..+.+.+
T Consensus 676 ~~i~~~i 682 (917)
T TIGR01116 676 ATIVAAV 682 (917)
T ss_pred HHHHHHH
Confidence 4555544
No 69
>TIGR01511 ATPase-IB1_Cu copper-(or silver)-translocating P-type ATPase. One member from Halobacterium is annotated as "molybdenum-binding protein" although no evidence can be found for this classification.
Probab=97.13 E-value=0.0016 Score=63.14 Aligned_cols=67 Identities=21% Similarity=0.241 Sum_probs=51.1
Q ss_pred EEEeCCCCCCHHHHHHHHHHhcCCCCCCCceeEEEcCCcccHHHHHHHHhcCCceEEEEecCCC--CccceEEeC--Chh
Q 040896 194 MEIRPCIDWDKGRALEYLLDTFGFNNASDFLPLYIGDDKTDEDAFKVIRHMGRGYPIIVSSVPR--ETKALYSLR--DPD 269 (288)
Q Consensus 194 ieI~~~~~~sKg~al~~l~~~~~~~~~~~~~vv~~GDs~ND~~Ml~~~~~~~~g~~v~v~na~~--~~~A~~~~~--~~~ 269 (288)
-++.|. .|...++.+.+ +++ +++++||+.||.+|++.+ |.+++|+++.+ +..|++++. +.+
T Consensus 448 ~~~~p~---~K~~~v~~l~~----~~~---~v~~VGDg~nD~~al~~A-----~vgia~g~g~~~a~~~Advvl~~~~l~ 512 (562)
T TIGR01511 448 AEVLPD---DKAALIKELQE----KGR---VVAMVGDGINDAPALAQA-----DVGIAIGAGTDVAIEAADVVLMRNDLN 512 (562)
T ss_pred ccCChH---HHHHHHHHHHH----cCC---EEEEEeCCCccHHHHhhC-----CEEEEeCCcCHHHHhhCCEEEeCCCHH
Confidence 344444 88888888776 334 999999999999999999 79999998754 247888874 566
Q ss_pred HHHHHH
Q 040896 270 EVMSFL 275 (288)
Q Consensus 270 ~v~~~l 275 (288)
++..++
T Consensus 513 ~l~~~i 518 (562)
T TIGR01511 513 DVATAI 518 (562)
T ss_pred HHHHHH
Confidence 665554
No 70
>TIGR01490 HAD-SF-IB-hyp1 HAD-superfamily subfamily IB hydrolase, TIGR01490. A subset of these sequences, including the Caulobacter crescentus CicA protein, cluster together and may represent a separate equivalog.
Probab=97.13 E-value=0.0005 Score=57.31 Aligned_cols=46 Identities=24% Similarity=0.244 Sum_probs=40.6
Q ss_pred CCCHHHHHHHHHHhcCCCCCCCceeEEEcCCcccHHHHHHHHhcCCceEEEEec
Q 040896 201 DWDKGRALEYLLDTFGFNNASDFLPLYIGDDKTDEDAFKVIRHMGRGYPIIVSS 254 (288)
Q Consensus 201 ~~sKg~al~~l~~~~~~~~~~~~~vv~~GDs~ND~~Ml~~~~~~~~g~~v~v~n 254 (288)
+-.|..+++.+++..+++.+ +++++|||.+|++|++.+ |.++++..
T Consensus 153 g~~K~~~l~~~~~~~~~~~~---~~~~~gDs~~D~~~~~~a-----~~~~~v~~ 198 (202)
T TIGR01490 153 GEGKVHALAELLAEEQIDLK---DSYAYGDSISDLPLLSLV-----GHPYVVNP 198 (202)
T ss_pred ChHHHHHHHHHHHHcCCCHH---HcEeeeCCcccHHHHHhC-----CCcEEeCC
Confidence 56899999999999998877 999999999999999999 77877653
No 71
>TIGR02137 HSK-PSP phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein. This enzyme is a member of the haloacid dehalogenase (HAD) superfamily, specifically part of subfamily IB by virtue of the presence of an alpha helical domain in between motifs I and II of the HAD domain . The closest homologs to this family are monofunctional phosphoserine phosphatases (TIGR00338).
Probab=97.09 E-value=0.00065 Score=57.08 Aligned_cols=66 Identities=8% Similarity=0.033 Sum_probs=47.2
Q ss_pred CCCHHHHHHHHHHhcCCCCCCCceeEEEcCCcccHHHHHHHHhcCCceEEEEecCCC-CccceE--EeCChhHHHHHHHH
Q 040896 201 DWDKGRALEYLLDTFGFNNASDFLPLYIGDDKTDEDAFKVIRHMGRGYPIIVSSVPR-ETKALY--SLRDPDEVMSFLRR 277 (288)
Q Consensus 201 ~~sKg~al~~l~~~~~~~~~~~~~vv~~GDs~ND~~Ml~~~~~~~~g~~v~v~na~~-~~~A~~--~~~~~~~v~~~l~~ 277 (288)
+-.|...++.+. ..+. +++++|||.||++|++.+ |+++++.-.+. ...|+- ++.+.+++.+.+..
T Consensus 130 ~~~K~~~l~~l~-~~~~------~~v~vGDs~nDl~ml~~A-----g~~ia~~ak~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (203)
T TIGR02137 130 KDPKRQSVIAFK-SLYY------RVIAAGDSYNDTTMLSEA-----HAGILFHAPENVIREFPQFPAVHTYEDLKREFLK 197 (203)
T ss_pred cchHHHHHHHHH-hhCC------CEEEEeCCHHHHHHHHhC-----CCCEEecCCHHHHHhCCCCCcccCHHHHHHHHHH
Confidence 458999999884 4442 789999999999999999 89998874322 233432 24577777776655
Q ss_pred H
Q 040896 278 L 278 (288)
Q Consensus 278 ~ 278 (288)
.
T Consensus 198 ~ 198 (203)
T TIGR02137 198 A 198 (203)
T ss_pred H
Confidence 4
No 72
>PRK11009 aphA acid phosphatase/phosphotransferase; Provisional
Probab=97.08 E-value=0.0023 Score=55.05 Aligned_cols=60 Identities=15% Similarity=0.206 Sum_probs=42.2
Q ss_pred hHHHHHHhhcCC-cEEEEEecCCccccCcCC---------C--------------------CCCCCCHHHHHHHHHHhhc
Q 040896 9 TFDRMVAAAKGK-KIVVFLDYDGTLSPIVED---------P--------------------DKAFMSDTMRMAVHEVAHF 58 (288)
Q Consensus 9 ~~~~~~~~~~~~-~~li~~DlDGTL~~~~~~---------~--------------------~~~~i~~~~~~aL~~L~~~ 58 (288)
-+|+|......+ ...|++|+|||+++.... + ....+-+.+++.|+.|+++
T Consensus 50 ~~~~~~~~~~~~~p~av~~DIDeTvldnsp~~~~~~~~f~~~~~~y~~~~~fw~~y~~~~~~~a~p~~Ga~elL~~L~~~ 129 (237)
T PRK11009 50 SVAQIEKSLEGRPPMAVGFDIDDTVLFSSPGFWRGKKTFSPGSEDYLKNQKFWEKMNNGWDEFSIPKEVARQLIDMHVKR 129 (237)
T ss_pred EHHHhhhhccCCCCcEEEEECcCccccCCchheeeeeccCCCcccccChHHHHHHHHhcccccCcchHHHHHHHHHHHHC
Confidence 367787776544 559999999999962110 0 0112233489999999888
Q ss_pred C-CEEEEcCCC
Q 040896 59 F-PTAIVSGRC 68 (288)
Q Consensus 59 ~-~v~i~TGR~ 68 (288)
+ .++++|||+
T Consensus 130 G~~I~iVTnR~ 140 (237)
T PRK11009 130 GDSIYFITGRT 140 (237)
T ss_pred CCeEEEEeCCC
Confidence 5 899999996
No 73
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=97.07 E-value=0.00053 Score=50.93 Aligned_cols=40 Identities=15% Similarity=0.117 Sum_probs=31.8
Q ss_pred EEEecCCccccCcCCCCCCCCCHHHHHHHHHHhhcC-CEEEEcCCCh
Q 040896 24 VFLDYDGTLSPIVEDPDKAFMSDTMRMAVHEVAHFF-PTAIVSGRCL 69 (288)
Q Consensus 24 i~~DlDGTL~~~~~~~~~~~i~~~~~~aL~~L~~~~-~v~i~TGR~~ 69 (288)
++||+||||.. ...+-|.+.++|++|++.+ +++++|-.+.
T Consensus 1 ~l~D~dGvl~~------g~~~ipga~e~l~~L~~~g~~~~~lTNns~ 41 (101)
T PF13344_consen 1 FLFDLDGVLYN------GNEPIPGAVEALDALRERGKPVVFLTNNSS 41 (101)
T ss_dssp EEEESTTTSEE------TTEE-TTHHHHHHHHHHTTSEEEEEES-SS
T ss_pred CEEeCccEeEe------CCCcCcCHHHHHHHHHHcCCCEEEEeCCCC
Confidence 68999999998 3456778899999999996 7888886554
No 74
>TIGR01656 Histidinol-ppas histidinol-phosphate phosphatase family domain. This domain is a member of the haloacid-dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. This superfamily is distinguished by the presence of three motifs: an N-terminal motif containing the nucleophilic aspartate, a central motif containing an conserved serine or threonine, and a C-terminal motif containing a conserved lysine (or arginine) and conserved aspartates. More specifically, the domian modelled here is a member of subfamily III of the HAD-superfamily by virtue of lacking a "capping" domain in either of the two common positions, between motifs 1 and 2, or between motifs 2 and 3.
Probab=97.06 E-value=0.00058 Score=54.24 Aligned_cols=47 Identities=17% Similarity=0.157 Sum_probs=34.3
Q ss_pred EEEEEecCCccccCcCCC-----CCCCCCHHHHHHHHHHhhcC-CEEEEcCCC
Q 040896 22 IVVFLDYDGTLSPIVEDP-----DKAFMSDTMRMAVHEVAHFF-PTAIVSGRC 68 (288)
Q Consensus 22 ~li~~DlDGTL~~~~~~~-----~~~~i~~~~~~aL~~L~~~~-~v~i~TGR~ 68 (288)
++++||+||||....... ..-++-+.+.++|+.|++++ .++|+|..+
T Consensus 1 ~~~~~d~dgtl~~~~~~~~~~~~~~~~~~~g~~~~l~~Lk~~g~~~~I~Sn~~ 53 (147)
T TIGR01656 1 PALFLDRDGVINEDTVSDYPRSLDDWQLRPGAVPALLTLRAAGYTVVVVTNQS 53 (147)
T ss_pred CeEEEeCCCceeccCCcccCCCHHHeEEcCChHHHHHHHHHCCCEEEEEeCCC
Confidence 478999999999853210 01235678899999999885 788888763
No 75
>PF06437 ISN1: IMP-specific 5'-nucleotidase; InterPro: IPR009453 The Saccharomyces cerevisiae ISN1 (YOR155c) gene encodes an IMP-specific 5'-nucleotidase, which catalyses degradation of IMP to inosine as part of the purine salvage pathway.; GO: 0000287 magnesium ion binding, 0016791 phosphatase activity, 0009117 nucleotide metabolic process
Probab=96.98 E-value=0.065 Score=48.56 Aligned_cols=62 Identities=16% Similarity=0.061 Sum_probs=41.0
Q ss_pred HHHHHhhc-CCcEEEEEecCCccccCcCCCCCCCCCHHHHHHHHHHhhc-CCEEEEcCCChhhHhhh
Q 040896 11 DRMVAAAK-GKKIVVFLDYDGTLSPIVEDPDKAFMSDTMRMAVHEVAHF-FPTAIVSGRCLDKVSRF 75 (288)
Q Consensus 11 ~~~~~~~~-~~~~li~~DlDGTL~~~~~~~~~~~i~~~~~~aL~~L~~~-~~v~i~TGR~~~~l~~~ 75 (288)
.++.+... .+.+|+-||=|+||..++.+- ..+..++.-|-+|-+. ..|+|+|.=.+....++
T Consensus 136 AQi~al~~~~~L~LvTFDgDvTLY~DG~sl---~~d~pvi~~ii~LL~~gv~VgIVTAAGY~~a~kY 199 (408)
T PF06437_consen 136 AQIMALAKNYGLKLVTFDGDVTLYEDGASL---EPDNPVIPRIIKLLRRGVKVGIVTAAGYPGAEKY 199 (408)
T ss_pred HHHHHhcccCCceEEEEcCCcccccCCCCC---CCCchHHHHHHHHHhcCCeEEEEeCCCCCChHHH
Confidence 44555543 478999999999999854321 1233455555555555 59999998887664443
No 76
>TIGR01460 HAD-SF-IIA Haloacid Dehalogenase Superfamily Class (subfamily) IIA. Many of the genes in this subfamily have been annotated as "pNPPase" "4-nitrophenyl phosphatase" or "NPPase". These all refer to the same activity versus a common lab test compound used to determine phosphatase activity. There is no evidence that this activity is physiologically relevant.
Probab=96.97 E-value=0.0011 Score=57.14 Aligned_cols=46 Identities=15% Similarity=0.156 Sum_probs=37.3
Q ss_pred EEEecCCccccCcCCCCCCCCCHHHHHHHHHHhhcC-CEEEEc---CCChhhHhhh
Q 040896 24 VFLDYDGTLSPIVEDPDKAFMSDTMRMAVHEVAHFF-PTAIVS---GRCLDKVSRF 75 (288)
Q Consensus 24 i~~DlDGTL~~~~~~~~~~~i~~~~~~aL~~L~~~~-~v~i~T---GR~~~~l~~~ 75 (288)
++||+||||++ ... +-+.+.++|+.|++++ ++.++| ||+...+.+.
T Consensus 1 ~lfD~DGvL~~-----~~~-~~~~a~e~i~~l~~~g~~~~~~tN~~~~~~~~~~~~ 50 (236)
T TIGR01460 1 FLFDIDGVLWL-----GHK-PIPGAAEALNRLRAKGKPVVFLTNNSSRSEEDYAEK 50 (236)
T ss_pred CEEeCcCccCc-----CCc-cCcCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHH
Confidence 57999999998 333 4458999999999885 888887 8999877664
No 77
>TIGR00213 GmhB_yaeD D,D-heptose 1,7-bisphosphate phosphatase. This family of proteins formerly designated yaeD resembles the histidinol phosphatase domain of the bifunctional protein HisB. The member from E. coli has been characterized as D,D-heptose 1,7-bisphosphate phosphatase, GmhB, involved in inner core LPS assembly (PubMed:11751812).
Probab=96.96 E-value=0.0006 Score=55.83 Aligned_cols=62 Identities=16% Similarity=0.093 Sum_probs=44.3
Q ss_pred CHHHHHHHHHHhcCCCCCCCceeEEEcCCcccHHHHHHHHhcCCceE--EEEecCC--CC---ccceEEeCChhHHH
Q 040896 203 DKGRALEYLLDTFGFNNASDFLPLYIGDDKTDEDAFKVIRHMGRGYP--IIVSSVP--RE---TKALYSLRDPDEVM 272 (288)
Q Consensus 203 sKg~al~~l~~~~~~~~~~~~~vv~~GDs~ND~~Ml~~~~~~~~g~~--v~v~na~--~~---~~A~~~~~~~~~v~ 272 (288)
-+...+...+++++++++ ++++|||+.+|+..=+.+ |+. +.+.-+. .. ..|++++++..++.
T Consensus 107 P~p~~~~~a~~~~~~~~~---~~v~VGDs~~Di~aA~~a-----G~~~~i~v~~g~~~~~~~~~~ad~~i~~~~el~ 175 (176)
T TIGR00213 107 PKPGMLLQARKELHIDMA---QSYMVGDKLEDMQAGVAA-----KVKTNVLVRTGKPITPEAENIADWVLNSLADLP 175 (176)
T ss_pred CCHHHHHHHHHHcCcChh---hEEEEcCCHHHHHHHHHC-----CCcEEEEEecCCcccccccccCCEEeccHHHhh
Confidence 356678888888999887 999999999998877776 553 3443332 11 24788888777653
No 78
>TIGR01675 plant-AP plant acid phosphatase. This model explicitly excludes the VSPs which lack the nucleophilc aspartate. The possibility exists, however, that some members of this family may, while containing all of the conserved HAD-superfamily catalytic residues, lack activity and have a function related to the function of the VSPs rather than the acid phosphatases.
Probab=96.93 E-value=0.0022 Score=54.58 Aligned_cols=54 Identities=15% Similarity=0.015 Sum_probs=41.7
Q ss_pred cCCcEEEEEecCCccccCc---------------------CCCCCCCCCHHHHHHHHHHhhcC-CEEEEcCCChhh
Q 040896 18 KGKKIVVFLDYDGTLSPIV---------------------EDPDKAFMSDTMRMAVHEVAHFF-PTAIVSGRCLDK 71 (288)
Q Consensus 18 ~~~~~li~~DlDGTL~~~~---------------------~~~~~~~i~~~~~~aL~~L~~~~-~v~i~TGR~~~~ 71 (288)
..++-+++||+|.|++... ........-+.+++++++|++.+ .|+++|||+...
T Consensus 74 ~dg~~A~V~DIDET~LsN~py~~~~~~g~~~~~~~~~~~wv~~~~apaip~al~l~~~l~~~G~~Vf~lTGR~e~~ 149 (229)
T TIGR01675 74 GDGMDAWIFDVDDTLLSNIPYYKKHGYGTEKTDPTAFWLWLGKGAAPALPEGLKLYQKIIELGIKIFLLSGRWEEL 149 (229)
T ss_pred CCCCcEEEEccccccccCHHHHHHhccCCCcCCHHHHHHHHHcCCCCCCHHHHHHHHHHHHCCCEEEEEcCCChHH
Confidence 3467899999999999721 00124456678899999999985 899999999765
No 79
>TIGR01512 ATPase-IB2_Cd heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase. .
Probab=96.91 E-value=0.0013 Score=63.48 Aligned_cols=67 Identities=21% Similarity=0.194 Sum_probs=51.1
Q ss_pred EEEeCCCCCCHHHHHHHHHHhcCCCCCCCceeEEEcCCcccHHHHHHHHhcCCceEEEEe-cCCC--CccceEEe--CCh
Q 040896 194 MEIRPCIDWDKGRALEYLLDTFGFNNASDFLPLYIGDDKTDEDAFKVIRHMGRGYPIIVS-SVPR--ETKALYSL--RDP 268 (288)
Q Consensus 194 ieI~~~~~~sKg~al~~l~~~~~~~~~~~~~vv~~GDs~ND~~Ml~~~~~~~~g~~v~v~-na~~--~~~A~~~~--~~~ 268 (288)
-++.|. +|...++.+.+.. + +++++||+.||.+|++.+ |.++++| ++.+ +..|++++ ++.
T Consensus 407 ~~~~p~---~K~~~i~~l~~~~----~---~v~~vGDg~nD~~al~~A-----~vgia~g~~~~~~~~~~ad~vl~~~~l 471 (536)
T TIGR01512 407 AELLPE---DKLEIVKELREKY----G---PVAMVGDGINDAPALAAA-----DVGIAMGASGSDVAIETADVVLLNDDL 471 (536)
T ss_pred hccCcH---HHHHHHHHHHhcC----C---EEEEEeCCHHHHHHHHhC-----CEEEEeCCCccHHHHHhCCEEEECCCH
Confidence 344454 8888777776543 4 999999999999999999 8999999 5544 25788888 567
Q ss_pred hHHHHHH
Q 040896 269 DEVMSFL 275 (288)
Q Consensus 269 ~~v~~~l 275 (288)
.++...+
T Consensus 472 ~~l~~~i 478 (536)
T TIGR01512 472 SRLPQAI 478 (536)
T ss_pred HHHHHHH
Confidence 7776654
No 80
>COG1778 Low specificity phosphatase (HAD superfamily) [General function prediction only]
Probab=96.88 E-value=0.0015 Score=51.66 Aligned_cols=57 Identities=19% Similarity=0.155 Sum_probs=39.7
Q ss_pred CcEEEEEecCCccccC----cCC-CCCCCCCHHHHHHHHHHhhcC-CEEEEcCCChhhHhhhc
Q 040896 20 KKIVVFLDYDGTLSPI----VED-PDKAFMSDTMRMAVHEVAHFF-PTAIVSGRCLDKVSRFV 76 (288)
Q Consensus 20 ~~~li~~DlDGTL~~~----~~~-~~~~~i~~~~~~aL~~L~~~~-~v~i~TGR~~~~l~~~~ 76 (288)
..|++++|+||||++= +.+ .+-....-+-=..|+-|.+.+ .++|+|||....+....
T Consensus 7 ~IkLli~DVDGvLTDG~ly~~~~Gee~KaFnv~DG~Gik~l~~~Gi~vAIITGr~s~ive~Ra 69 (170)
T COG1778 7 NIKLLILDVDGVLTDGKLYYDENGEEIKAFNVRDGHGIKLLLKSGIKVAIITGRDSPIVEKRA 69 (170)
T ss_pred hceEEEEeccceeecCeEEEcCCCceeeeeeccCcHHHHHHHHcCCeEEEEeCCCCHHHHHHH
Confidence 4899999999999971 111 111122223345677788775 99999999999888864
No 81
>PRK13222 phosphoglycolate phosphatase; Provisional
Probab=96.87 E-value=0.0029 Score=53.53 Aligned_cols=67 Identities=16% Similarity=0.223 Sum_probs=53.6
Q ss_pred CHHHHHHHHHHhcCCCCCCCceeEEEcCCcccHHHHHHHHhcCCce-EEEEecCCC------CccceEEeCChhHHHHHH
Q 040896 203 DKGRALEYLLDTFGFNNASDFLPLYIGDDKTDEDAFKVIRHMGRGY-PIIVSSVPR------ETKALYSLRDPDEVMSFL 275 (288)
Q Consensus 203 sKg~al~~l~~~~~~~~~~~~~vv~~GDs~ND~~Ml~~~~~~~~g~-~v~v~na~~------~~~A~~~~~~~~~v~~~l 275 (288)
.|..+++.+++.++++++ ++++|||+.+|+++.+.+ |+ ++.+..+.. ...+++++++..++..+|
T Consensus 150 p~~~~~~~~~~~~~~~~~---~~i~igD~~~Di~~a~~~-----g~~~i~v~~g~~~~~~~~~~~~~~~i~~~~~l~~~l 221 (226)
T PRK13222 150 PDPAPLLLACEKLGLDPE---EMLFVGDSRNDIQAARAA-----GCPSVGVTYGYNYGEPIALSEPDVVIDHFAELLPLL 221 (226)
T ss_pred cChHHHHHHHHHcCCChh---heEEECCCHHHHHHHHHC-----CCcEEEECcCCCCccchhhcCCCEEECCHHHHHHHH
Confidence 457899999999999877 999999999999999998 54 666654321 135789999999988877
Q ss_pred HH
Q 040896 276 RR 277 (288)
Q Consensus 276 ~~ 277 (288)
.+
T Consensus 222 ~~ 223 (226)
T PRK13222 222 GL 223 (226)
T ss_pred HH
Confidence 54
No 82
>PF08645 PNK3P: Polynucleotide kinase 3 phosphatase; InterPro: IPR013954 Polynucleotide kinase 3 phosphatases play a role in the repair of single breaks in DNA induced by DNA-damaging agents such as gamma radiation and camptothecin []. ; PDB: 2FPW_A 2FPR_A 2FPX_A 2FPS_A 2FPU_B 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B 3U7G_A ....
Probab=96.85 E-value=0.00089 Score=54.00 Aligned_cols=44 Identities=32% Similarity=0.434 Sum_probs=30.6
Q ss_pred EEEEEecCCccccCcC------CCCCC-CCCHHHHHHHHHHhhcC-CEEEEc
Q 040896 22 IVVFLDYDGTLSPIVE------DPDKA-FMSDTMRMAVHEVAHFF-PTAIVS 65 (288)
Q Consensus 22 ~li~~DlDGTL~~~~~------~~~~~-~i~~~~~~aL~~L~~~~-~v~i~T 65 (288)
|+++||+||||..... ++++- .+++.+.++|++|.+.+ .|+|+|
T Consensus 1 Kia~fD~DgTLi~~~s~~~f~~~~~D~~~~~~~v~~~L~~l~~~Gy~IvIvT 52 (159)
T PF08645_consen 1 KIAFFDLDGTLIKTKSGKKFPKDPDDWKFFPPGVPEALRELHKKGYKIVIVT 52 (159)
T ss_dssp SEEEE-SCTTTEE-STSTTS-SSTCGGEEC-TTHHHHHHHHHHTTEEEEEEE
T ss_pred CEEEEeCCCCccCCCCCCcCcCCHHHhhhcchhHHHHHHHHHhcCCeEEEEe
Confidence 5899999999997431 22232 34567999999998887 788877
No 83
>TIGR01533 lipo_e_P4 5'-nucleotidase, lipoprotein e(P4) family. which in turn belongs to the haloacid dehalogenase (HAD) superfamily of aspartate-dependent hydrolases. Members are found on the outer membrane of Gram-negative bacteria and the cytoplasmic membrane of Gram-positive bacteria. Most members have classic lipoprotein signal sequences. A critical role of this 5'-nucleotidase in Haemophilus influenzae is the degradation of external riboside in order to allow transport into the cell. An earlier suggested role in hemin transport is no longer current. This enzyme may also have other physiologically significant roles.
Probab=96.85 E-value=0.0024 Score=55.81 Aligned_cols=66 Identities=21% Similarity=0.099 Sum_probs=46.4
Q ss_pred chhhHHHHHHhhcCCcEEEEEecCCccccCcC--------C-C------------CCCCCCHHHHHHHHHHhhcC-CEEE
Q 040896 6 ALDTFDRMVAAAKGKKIVVFLDYDGTLSPIVE--------D-P------------DKAFMSDTMRMAVHEVAHFF-PTAI 63 (288)
Q Consensus 6 ~~~~~~~~~~~~~~~~~li~~DlDGTL~~~~~--------~-~------------~~~~i~~~~~~aL~~L~~~~-~v~i 63 (288)
|..-|++.......++..|++|+|+|+++... + + ....+-|.+.+.|+.|.+.+ .+++
T Consensus 60 A~~~~~~~~~~~~~kp~AVV~DIDeTvLdns~y~~~~~~~~~~~~~~~w~~wv~~~~a~~ipGA~e~L~~L~~~G~~v~i 139 (266)
T TIGR01533 60 AKMRLDNNLKKVKDKKYAIVLDLDETVLDNSPYQGYQVLNNKPFDPETWDKWVQAAQAKPVAGALDFLNYANSKGVKIFY 139 (266)
T ss_pred HHHHHHHHHhccCCCCCEEEEeCccccccChHHHHHHhcCCCcCCHHHHHHHHHcCCCCcCccHHHHHHHHHHCCCeEEE
Confidence 34456666654455678999999999986321 0 0 12234567899999999885 8999
Q ss_pred EcCCChhh
Q 040896 64 VSGRCLDK 71 (288)
Q Consensus 64 ~TGR~~~~ 71 (288)
+|+|+...
T Consensus 140 VTnR~~~~ 147 (266)
T TIGR01533 140 VSNRSEKE 147 (266)
T ss_pred EeCCCcch
Confidence 99998543
No 84
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=96.85 E-value=0.0043 Score=55.16 Aligned_cols=56 Identities=21% Similarity=0.045 Sum_probs=44.6
Q ss_pred cEEEEEecCCccccCcCC----C---CCCCCCHHHHHHHHHHhhcC-CEEEEcCCChhhHhhhc
Q 040896 21 KIVVFLDYDGTLSPIVED----P---DKAFMSDTMRMAVHEVAHFF-PTAIVSGRCLDKVSRFV 76 (288)
Q Consensus 21 ~~li~~DlDGTL~~~~~~----~---~~~~i~~~~~~aL~~L~~~~-~v~i~TGR~~~~l~~~~ 76 (288)
.+++++|+||||...... + .+..+.+.+.++|++|++.+ .++++|||+.......+
T Consensus 158 ~~~~~~D~dgtl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~i~i~T~r~~~~~~~~l 221 (300)
T PHA02530 158 PKAVIFDIDGTLAKMGGRSPYDWTKVKEDKPNPMVVELVKMYKAAGYEIIVVSGRDGVCEEDTV 221 (300)
T ss_pred CCEEEEECCCcCcCCCCCCccchhhcccCCCChhHHHHHHHHHhCCCEEEEEeCCChhhHHHHH
Confidence 578999999999974321 0 13467889999999999986 89999999998777654
No 85
>TIGR02726 phenyl_P_delta phenylphosphate carboxylase, delta subunit. Members of this protein family are the alpha subunit of phenylphosphate carboxylase. Phenol (methyl-benzene) is converted to phenylphosphate, then para-carboxylated by this four-subunit enzyme, with the release of phosphate, to 4-hydroxybenzoate. The enzyme contains neither biotin nor thiamin pyrophosphate. This delta subunit belongs to HAD family hydrolases.
Probab=96.85 E-value=0.0013 Score=53.66 Aligned_cols=57 Identities=19% Similarity=0.114 Sum_probs=44.6
Q ss_pred CcEEEEEecCCccccC-----cCCCCCCCCCHHHHHHHHHHhhcC-CEEEEcCCChhhHhhhc
Q 040896 20 KKIVVFLDYDGTLSPI-----VEDPDKAFMSDTMRMAVHEVAHFF-PTAIVSGRCLDKVSRFV 76 (288)
Q Consensus 20 ~~~li~~DlDGTL~~~-----~~~~~~~~i~~~~~~aL~~L~~~~-~v~i~TGR~~~~l~~~~ 76 (288)
..|+++||+||||++- .+.......+.+--.+|+.|++.+ .++|+|+++...+...+
T Consensus 6 ~i~~~v~d~dGv~tdg~~~~~~~g~~~~~~~~~D~~~~~~L~~~Gi~laIiT~k~~~~~~~~l 68 (169)
T TIGR02726 6 NIKLVILDVDGVMTDGRIVINDEGIESRNFDIKDGMGVIVLQLCGIDVAIITSKKSGAVRHRA 68 (169)
T ss_pred cCeEEEEeCceeeECCeEEEcCCCcEEEEEecchHHHHHHHHHCCCEEEEEECCCcHHHHHHH
Confidence 3799999999999983 111123345667788999999885 89999999999888765
No 86
>TIGR01497 kdpB K+-transporting ATPase, B subunit. One sequence is apparently mis-annotated in the primary literature, but properly annotated by TIGR.
Probab=96.84 E-value=0.0016 Score=63.98 Aligned_cols=68 Identities=19% Similarity=0.203 Sum_probs=52.5
Q ss_pred EEEEeCCCCCCHHHHHHHHHHhcCCCCCCCceeEEEcCCcccHHHHHHHHhcCCceEEEEecCCC--CccceEEeC--Ch
Q 040896 193 VMEIRPCIDWDKGRALEYLLDTFGFNNASDFLPLYIGDDKTDEDAFKVIRHMGRGYPIIVSSVPR--ETKALYSLR--DP 268 (288)
Q Consensus 193 ~ieI~~~~~~sKg~al~~l~~~~~~~~~~~~~vv~~GDs~ND~~Ml~~~~~~~~g~~v~v~na~~--~~~A~~~~~--~~ 268 (288)
+-+..|. +|...++.+.++ .. .|+++||+.||.++|+.+ +.|++|+++.+ +..|++++- +.
T Consensus 489 ~a~~~Pe---dK~~~v~~lq~~----g~---~VamvGDG~NDapAL~~A-----dvGiAm~~gt~~akeaadivLldd~~ 553 (675)
T TIGR01497 489 IAEATPE---DKIALIRQEQAE----GK---LVAMTGDGTNDAPALAQA-----DVGVAMNSGTQAAKEAANMVDLDSDP 553 (675)
T ss_pred EcCCCHH---HHHHHHHHHHHc----CC---eEEEECCCcchHHHHHhC-----CEeEEeCCCCHHHHHhCCEEECCCCH
Confidence 4455565 899999998764 23 799999999999999999 79999998765 468888864 35
Q ss_pred hHHHHHH
Q 040896 269 DEVMSFL 275 (288)
Q Consensus 269 ~~v~~~l 275 (288)
..+.+.+
T Consensus 554 s~Iv~av 560 (675)
T TIGR01497 554 TKLIEVV 560 (675)
T ss_pred HHHHHHH
Confidence 5555544
No 87
>TIGR01668 YqeG_hyp_ppase HAD superfamily (subfamily IIIA) phosphatase, TIGR01668. This family consists of sequences from fungi, plants, cyanobacteria, gram-positive bacteria and Deinococcus. There is presently no characterization of any sequence in this family.
Probab=96.81 E-value=0.0029 Score=51.52 Aligned_cols=47 Identities=26% Similarity=0.044 Sum_probs=39.8
Q ss_pred CCcEEEEEecCCccccCcCCCCCCCCCHHHHHHHHHHhhcC-CEEEEcCCCh
Q 040896 19 GKKIVVFLDYDGTLSPIVEDPDKAFMSDTMRMAVHEVAHFF-PTAIVSGRCL 69 (288)
Q Consensus 19 ~~~~li~~DlDGTL~~~~~~~~~~~i~~~~~~aL~~L~~~~-~v~i~TGR~~ 69 (288)
...+++++|+||||+.. ....+.+.+.++|++|++.+ .++|+|+.+.
T Consensus 23 ~~v~~vv~D~Dgtl~~~----~~~~~~pgv~e~L~~Lk~~g~~l~I~Sn~~~ 70 (170)
T TIGR01668 23 VGIKGVVLDKDNTLVYP----DHNEAYPALRDWIEELKAAGRKLLIVSNNAG 70 (170)
T ss_pred CCCCEEEEecCCccccC----CCCCcChhHHHHHHHHHHcCCEEEEEeCCch
Confidence 46799999999999984 23367889999999999885 8999999984
No 88
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=96.80 E-value=0.0022 Score=55.25 Aligned_cols=46 Identities=15% Similarity=0.043 Sum_probs=37.8
Q ss_pred CcEEEEEecCCccccCcCCCCCCCCCHHHHHHHHHHhhcC-CEEEEcCCChhh
Q 040896 20 KKIVVFLDYDGTLSPIVEDPDKAFMSDTMRMAVHEVAHFF-PTAIVSGRCLDK 71 (288)
Q Consensus 20 ~~~li~~DlDGTL~~~~~~~~~~~i~~~~~~aL~~L~~~~-~v~i~TGR~~~~ 71 (288)
+.++++||+||||.+ ...+-|.+.++|++|++.+ +++++|..+...
T Consensus 7 ~~~~~~~D~dG~l~~------~~~~~pga~e~L~~L~~~G~~~~ivTN~~~~~ 53 (242)
T TIGR01459 7 DYDVFLLDLWGVIID------GNHTYPGAVQNLNKIIAQGKPVYFVSNSPRNI 53 (242)
T ss_pred cCCEEEEeccccccc------CCccCccHHHHHHHHHHCCCEEEEEeCCCCCh
Confidence 457899999999998 2356789999999999986 899987766643
No 89
>PF08235 LNS2: LNS2 (Lipin/Ned1/Smp2); InterPro: IPR013209 This domain is found in Saccharomyces cerevisiae (Baker's yeast) protein SMP2, proteins with an N-terminal lipin domain (IPR007651 from INTERPRO) and phosphatidylinositol transfer proteins []. SMP2 is involved in plasmid maintenance and respiration []. Lipin proteins are involved in adipose tissue development and insulin resistance [].
Probab=96.80 E-value=0.0018 Score=51.81 Aligned_cols=51 Identities=18% Similarity=0.127 Sum_probs=38.9
Q ss_pred EEEEecCCccccCcC------CCCCCCCCHHHHHHHHHHhhcC-CEEEEcCCChhhHh
Q 040896 23 VVFLDYDGTLSPIVE------DPDKAFMSDTMRMAVHEVAHFF-PTAIVSGRCLDKVS 73 (288)
Q Consensus 23 li~~DlDGTL~~~~~------~~~~~~i~~~~~~aL~~L~~~~-~v~i~TGR~~~~l~ 73 (288)
++++|+|||++.++. .-.....++...+..+++++++ +++-+|+||.....
T Consensus 1 VVvsDIDGTiT~SD~~G~i~~~~G~d~~h~g~~~l~~~i~~~GY~ilYlTaRp~~qa~ 58 (157)
T PF08235_consen 1 VVVSDIDGTITKSDVLGHILPILGKDWTHPGAAELYRKIADNGYKILYLTARPIGQAN 58 (157)
T ss_pred CEEEeccCCcCccchhhhhhhccCchhhhhcHHHHHHHHHHCCeEEEEECcCcHHHHH
Confidence 489999999998531 1112256788899999999997 89999999985433
No 90
>PRK13582 thrH phosphoserine phosphatase; Provisional
Probab=96.77 E-value=0.0018 Score=54.12 Aligned_cols=67 Identities=13% Similarity=0.135 Sum_probs=46.8
Q ss_pred CCHHHHHHHHHHhcCCCCCCCceeEEEcCCcccHHHHHHHHhcCCceEEEEecCCC--CccceE-EeCChhHHHHHHHHH
Q 040896 202 WDKGRALEYLLDTFGFNNASDFLPLYIGDDKTDEDAFKVIRHMGRGYPIIVSSVPR--ETKALY-SLRDPDEVMSFLRRL 278 (288)
Q Consensus 202 ~sKg~al~~l~~~~~~~~~~~~~vv~~GDs~ND~~Ml~~~~~~~~g~~v~v~na~~--~~~A~~-~~~~~~~v~~~l~~~ 278 (288)
..|..+++.+.. .++ +++++|||.||++|.+.+ |.++.++.... ...+.+ ++++..++.++|.++
T Consensus 131 ~~k~~~l~~~~~----~~~---~~v~iGDs~~D~~~~~aa-----~~~v~~~~~~~~~~~~~~~~~~~~~~el~~~l~~~ 198 (205)
T PRK13582 131 DGKRQAVKALKS----LGY---RVIAAGDSYNDTTMLGEA-----DAGILFRPPANVIAEFPQFPAVHTYDELLAAIDKA 198 (205)
T ss_pred chHHHHHHHHHH----hCC---eEEEEeCCHHHHHHHHhC-----CCCEEECCCHHHHHhCCcccccCCHHHHHHHHHHH
Confidence 356666665432 234 899999999999999998 67776654322 124444 678999999888777
Q ss_pred HH
Q 040896 279 AR 280 (288)
Q Consensus 279 ~~ 280 (288)
..
T Consensus 199 ~~ 200 (205)
T PRK13582 199 SA 200 (205)
T ss_pred Hh
Confidence 53
No 91
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=96.77 E-value=0.0053 Score=49.14 Aligned_cols=55 Identities=24% Similarity=0.174 Sum_probs=47.0
Q ss_pred cCCcEEEEEecCCccccCcCCCCCCCCCHHHHHHHHHHhhcC-CEEEEcCCChhhHhhhc
Q 040896 18 KGKKIVVFLDYDGTLSPIVEDPDKAFMSDTMRMAVHEVAHFF-PTAIVSGRCLDKVSRFV 76 (288)
Q Consensus 18 ~~~~~li~~DlDGTL~~~~~~~~~~~i~~~~~~aL~~L~~~~-~v~i~TGR~~~~l~~~~ 76 (288)
+...+.+++|+|.||+..+ ....+|+.++=+.++++.+ .++|+|-.+...+..+.
T Consensus 25 ~~Gikgvi~DlDNTLv~wd----~~~~tpe~~~W~~e~k~~gi~v~vvSNn~e~RV~~~~ 80 (175)
T COG2179 25 AHGIKGVILDLDNTLVPWD----NPDATPELRAWLAELKEAGIKVVVVSNNKESRVARAA 80 (175)
T ss_pred HcCCcEEEEeccCceeccc----CCCCCHHHHHHHHHHHhcCCEEEEEeCCCHHHHHhhh
Confidence 4578999999999999973 5568999999999999995 88999988888777664
No 92
>PLN02954 phosphoserine phosphatase
Probab=96.70 E-value=0.0042 Score=52.64 Aligned_cols=67 Identities=24% Similarity=0.238 Sum_probs=47.6
Q ss_pred CCCHHHHHHHHHHhcCCCCCCCceeEEEcCCcccHHHHHHHHhcCCceEEEEecCCC----CccceEEeCChhHHHHHH
Q 040896 201 DWDKGRALEYLLDTFGFNNASDFLPLYIGDDKTDEDAFKVIRHMGRGYPIIVSSVPR----ETKALYSLRDPDEVMSFL 275 (288)
Q Consensus 201 ~~sKg~al~~l~~~~~~~~~~~~~vv~~GDs~ND~~Ml~~~~~~~~g~~v~v~na~~----~~~A~~~~~~~~~v~~~l 275 (288)
+..|..+++.++++++.+ ++++|||+.||+.|.+.+. -.+.++.+.... ...|++++++..++.++|
T Consensus 153 ~~~K~~~i~~~~~~~~~~-----~~i~iGDs~~Di~aa~~~~---~~~~~~~~~~~~~~~~~~~~~~~i~~~~el~~~~ 223 (224)
T PLN02954 153 SGGKAEAVQHIKKKHGYK-----TMVMIGDGATDLEARKPGG---ADLFIGYGGVQVREAVAAKADWFVTDFQDLIEVL 223 (224)
T ss_pred CccHHHHHHHHHHHcCCC-----ceEEEeCCHHHHHhhhcCC---CCEEEecCCCccCHHHHhcCCEEECCHHHHHHhh
Confidence 457999999999998864 8999999999999955531 023344443221 135889999888877654
No 93
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=96.69 E-value=0.0068 Score=49.16 Aligned_cols=48 Identities=21% Similarity=0.135 Sum_probs=40.0
Q ss_pred hhcCCcEEEEEecCCccccCcCCCCCCCCCHHHHHHHHHHhhc-C--CEEEEcCC
Q 040896 16 AAKGKKIVVFLDYDGTLSPIVEDPDKAFMSDTMRMAVHEVAHF-F--PTAIVSGR 67 (288)
Q Consensus 16 ~~~~~~~li~~DlDGTL~~~~~~~~~~~i~~~~~~aL~~L~~~-~--~v~i~TGR 67 (288)
..+.+.|.++||+|+||+.+ ....++++..+.++++++. + .|+|+|=.
T Consensus 36 Lk~~Gik~li~DkDNTL~~~----~~~~i~~~~~~~~~~l~~~~~~~~v~IvSNs 86 (168)
T PF09419_consen 36 LKKKGIKALIFDKDNTLTPP----YEDEIPPEYAEWLNELKKQFGKDRVLIVSNS 86 (168)
T ss_pred hhhcCceEEEEcCCCCCCCC----CcCcCCHHHHHHHHHHHHHCCCCeEEEEECC
Confidence 34667899999999999985 4667999999999999988 4 38888765
No 94
>KOG1050 consensus Trehalose-6-phosphate synthase component TPS1 and related subunits [Carbohydrate transport and metabolism]
Probab=96.65 E-value=5.8e-07 Score=87.99 Aligned_cols=94 Identities=37% Similarity=0.429 Sum_probs=73.1
Q ss_pred CCccchhhHHHHHHhhcCCcEEEEEecCCccccCcCCCCCCCCCHHHHHHHHHHhhcCCEEEEcCCChhh----------
Q 040896 2 KHPSALDTFDRMVAAAKGKKIVVFLDYDGTLSPIVEDPDKAFMSDTMRMAVHEVAHFFPTAIVSGRCLDK---------- 71 (288)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~li~~DlDGTL~~~~~~~~~~~i~~~~~~aL~~L~~~~~v~i~TGR~~~~---------- 71 (288)
.||++.--||.+-..+.++..|.++|.||||-.+..++..++++-.++.+..+..+...-.+++||.+..
T Consensus 170 flhspfpssEi~r~lp~r~eIl~gll~~~~i~f~t~d~arhFls~c~R~l~~~~~s~~~~~~v~~rgr~~~v~~~pigid 249 (732)
T KOG1050|consen 170 FLHSPFPSSEIYRCLPVRKEILRGLLYDDLLGFHTDDYARHFLSTCSRLLGLEVASKFPTAGVSGRGRDVSVKALPIGID 249 (732)
T ss_pred eccCCCChHHHHHhcccHHHHHHhhhccCccccccccHHHHHHHHHHHHHHhhhhccCCcceEEeccceeeeeecccccc
Confidence 4788888899988888888999999999999998877777777777777777777665566699999765
Q ss_pred HhhhcCCCCeEEEccCceeEeCCC
Q 040896 72 VSRFVQLKNVVYAGSHGMDISTPA 95 (288)
Q Consensus 72 l~~~~~~~~~~~i~~nGa~i~~~~ 95 (288)
..++..+...+.+++.|..+..+.
T Consensus 250 ~~r~v~~~~~~~~~~~~~ei~~~~ 273 (732)
T KOG1050|consen 250 VQRFVKLLELPYVGSKGMEIKEPF 273 (732)
T ss_pred hHHhhccccchhHHHHHHHHhhhc
Confidence 444444556778888888877653
No 95
>TIGR01525 ATPase-IB_hvy heavy metal translocating P-type ATPase. This alignment encompasses two equivalog models for the copper and cadmium-type heavy metal transporting P-type ATPases (TIGR01511 and TIGR01512) as well as those species which score ambiguously between both models. For more comments and references, see the files on TIGR01511 and 01512.
Probab=96.64 E-value=0.0025 Score=61.77 Aligned_cols=61 Identities=18% Similarity=0.157 Sum_probs=47.5
Q ss_pred CHHHHHHHHHHhcCCCCCCCceeEEEcCCcccHHHHHHHHhcCCceEEEEecCCC--CccceEEeC--ChhHHHHHH
Q 040896 203 DKGRALEYLLDTFGFNNASDFLPLYIGDDKTDEDAFKVIRHMGRGYPIIVSSVPR--ETKALYSLR--DPDEVMSFL 275 (288)
Q Consensus 203 sKg~al~~l~~~~~~~~~~~~~vv~~GDs~ND~~Ml~~~~~~~~g~~v~v~na~~--~~~A~~~~~--~~~~v~~~l 275 (288)
+|...++.+.+ .+. +++++||+.||++|++.+ |.+++++++.+ +..|++++. +..++.+.+
T Consensus 435 ~K~~~v~~l~~----~~~---~v~~vGDg~nD~~al~~A-----~vgia~g~~~~~~~~~Ad~vi~~~~~~~l~~~i 499 (556)
T TIGR01525 435 DKLAIVKELQE----EGG---VVAMVGDGINDAPALAAA-----DVGIAMGAGSDVAIEAADIVLLNDDLSSLPTAI 499 (556)
T ss_pred HHHHHHHHHHH----cCC---EEEEEECChhHHHHHhhC-----CEeEEeCCCCHHHHHhCCEEEeCCCHHHHHHHH
Confidence 78877777765 334 899999999999999999 79999997654 247888876 466666654
No 96
>TIGR01685 MDP-1 magnesium-dependent phosphatase-1. This model represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterized as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues.
Probab=96.63 E-value=0.0032 Score=51.53 Aligned_cols=57 Identities=16% Similarity=0.056 Sum_probs=42.7
Q ss_pred cEEEEEecCCccccCcCC-----------C----------CCCCCCHHHHHHHHHHhhcC-CEEEEcCC-ChhhHhhhcC
Q 040896 21 KIVVFLDYDGTLSPIVED-----------P----------DKAFMSDTMRMAVHEVAHFF-PTAIVSGR-CLDKVSRFVQ 77 (288)
Q Consensus 21 ~~li~~DlDGTL~~~~~~-----------~----------~~~~i~~~~~~aL~~L~~~~-~v~i~TGR-~~~~l~~~~~ 77 (288)
.+|++||+|+||.++.-. + ....+-+.+.+.|+.|++.+ +++++|++ +...+...+.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~pGv~elL~~Lk~~G~~l~I~Sn~~~~~~~~~~L~ 81 (174)
T TIGR01685 2 PRVIVFDLDGTLWDHYMISLLGGPFKPVKQNNSIIIDKSGTEVTLIKEVRDVLQTLKDAGTYLATASWNDVPEWAYEILG 81 (174)
T ss_pred CcEEEEeCCCCCcCcccccccCCCceeccCCCCeEEeCCCCEEEEcccHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHH
Confidence 489999999999984200 0 12345678899999999886 89999988 7777666653
No 97
>smart00577 CPDc catalytic domain of ctd-like phosphatases.
Probab=96.59 E-value=0.0041 Score=49.41 Aligned_cols=57 Identities=14% Similarity=0.095 Sum_probs=43.1
Q ss_pred CcEEEEEecCCccccCcC---CCC-CC-----------------CCCHHHHHHHHHHhhcCCEEEEcCCChhhHhhhc
Q 040896 20 KKIVVFLDYDGTLSPIVE---DPD-KA-----------------FMSDTMRMAVHEVAHFFPTAIVSGRCLDKVSRFV 76 (288)
Q Consensus 20 ~~~li~~DlDGTL~~~~~---~~~-~~-----------------~i~~~~~~aL~~L~~~~~v~i~TGR~~~~l~~~~ 76 (288)
+++++++||||||+.... .+. .. .+-|.+.+.|..|++...++|+|+.+...+...+
T Consensus 1 ~k~~lvldld~tl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~pG~~e~L~~L~~~~~l~I~Ts~~~~~~~~il 78 (148)
T smart00577 1 KKKTLVLDLDETLVHSTHRSFKEWTNRDFIVPVLIDGHPHGVYVKKRPGVDEFLKRASELFELVVFTAGLRMYADPVL 78 (148)
T ss_pred CCcEEEEeCCCCeECCCCCcCCCCCccceEEEEEeCCceEEEEEEECCCHHHHHHHHHhccEEEEEeCCcHHHHHHHH
Confidence 468899999999998521 110 01 2357889999999865699999999999888765
No 98
>COG2217 ZntA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=96.51 E-value=0.0037 Score=61.77 Aligned_cols=69 Identities=22% Similarity=0.120 Sum_probs=56.0
Q ss_pred eEEEEeCCCCCCHHHHHHHHHHhcCCCCCCCceeEEEcCCcccHHHHHHHHhcCCceEEEEecCCC--CccceEEeC--C
Q 040896 192 KVMEIRPCIDWDKGRALEYLLDTFGFNNASDFLPLYIGDDKTDEDAFKVIRHMGRGYPIIVSSVPR--ETKALYSLR--D 267 (288)
Q Consensus 192 ~~ieI~~~~~~sKg~al~~l~~~~~~~~~~~~~vv~~GDs~ND~~Ml~~~~~~~~g~~v~v~na~~--~~~A~~~~~--~ 267 (288)
.+-|+.|. +|...+++|.+.- . .|+.+||+-||-|.|..+ ..||+||.+.+ ...||.++- +
T Consensus 579 v~AellPe---dK~~~V~~l~~~g----~---~VamVGDGINDAPALA~A-----dVGiAmG~GtDvA~eaADvvL~~~d 643 (713)
T COG2217 579 VRAELLPE---DKAEIVRELQAEG----R---KVAMVGDGINDAPALAAA-----DVGIAMGSGTDVAIEAADVVLMRDD 643 (713)
T ss_pred heccCCcH---HHHHHHHHHHhcC----C---EEEEEeCCchhHHHHhhc-----CeeEeecCCcHHHHHhCCEEEecCC
Confidence 45788888 9999999998543 3 899999999999999999 69999999765 357888863 4
Q ss_pred hhHHHHHH
Q 040896 268 PDEVMSFL 275 (288)
Q Consensus 268 ~~~v~~~l 275 (288)
...+.+.+
T Consensus 644 L~~v~~ai 651 (713)
T COG2217 644 LSAVPEAI 651 (713)
T ss_pred HHHHHHHH
Confidence 66666655
No 99
>PRK08942 D,D-heptose 1,7-bisphosphate phosphatase; Validated
Probab=96.47 E-value=0.0022 Score=52.64 Aligned_cols=64 Identities=20% Similarity=0.243 Sum_probs=46.1
Q ss_pred HHHHHHHHHhcCCCCCCCceeEEEcCCcccHHHHHHHHhcCCce-EEEEecCCC-----Cccc--eEEeCChhHHHHHHH
Q 040896 205 GRALEYLLDTFGFNNASDFLPLYIGDDKTDEDAFKVIRHMGRGY-PIIVSSVPR-----ETKA--LYSLRDPDEVMSFLR 276 (288)
Q Consensus 205 g~al~~l~~~~~~~~~~~~~vv~~GDs~ND~~Ml~~~~~~~~g~-~v~v~na~~-----~~~A--~~~~~~~~~v~~~l~ 276 (288)
......+++.++++++ ++++|||+.+|+.+-+.+ |+ ++.+..+.. ...+ ++++++..++.++|.
T Consensus 106 p~~~~~~~~~l~~~~~---~~~~VgDs~~Di~~A~~a-----G~~~i~v~~g~~~~~~~~~~~~~~~ii~~l~el~~~l~ 177 (181)
T PRK08942 106 PGMLLSIAERLNIDLA---GSPMVGDSLRDLQAAAAA-----GVTPVLVRTGKGVTTLAEGAAPGTWVLDSLADLPQALK 177 (181)
T ss_pred HHHHHHHHHHcCCChh---hEEEEeCCHHHHHHHHHC-----CCeEEEEcCCCCchhhhcccCCCceeecCHHHHHHHHH
Confidence 4567778888898877 999999999999888777 53 455544321 1235 788888887776654
No 100
>COG4087 Soluble P-type ATPase [General function prediction only]
Probab=96.44 E-value=0.0046 Score=47.41 Aligned_cols=57 Identities=18% Similarity=0.247 Sum_probs=41.1
Q ss_pred HhcCCCCCCCceeEEEcCCcccHHHHHHHHhcCCceEEEE-ec--CCCC--ccceEEeCChhHHHHHHHH
Q 040896 213 DTFGFNNASDFLPLYIGDDKTDEDAFKVIRHMGRGYPIIV-SS--VPRE--TKALYSLRDPDEVMSFLRR 277 (288)
Q Consensus 213 ~~~~~~~~~~~~vv~~GDs~ND~~Ml~~~~~~~~g~~v~v-~n--a~~~--~~A~~~~~~~~~v~~~l~~ 277 (288)
+.++-+.+ .++++||+.||+.||..+ ..||++ ++ ++.+ ..|++++.+..++...+..
T Consensus 87 ~eLkk~~~---k~vmVGnGaND~laLr~A-----DlGI~tiq~e~v~~r~l~~ADvvik~i~e~ldl~~~ 148 (152)
T COG4087 87 RELKKRYE---KVVMVGNGANDILALREA-----DLGICTIQQEGVPERLLLTADVVLKEIAEILDLLKD 148 (152)
T ss_pred HHhcCCCc---EEEEecCCcchHHHhhhc-----ccceEEeccCCcchHHHhhchhhhhhHHHHHHHhhc
Confidence 33433445 999999999999999999 477555 33 2333 3788998888888777653
No 101
>TIGR01524 ATPase-IIIB_Mg magnesium-translocating P-type ATPase. The magnesium ATPases have been classified as type IIIB by a phylogenetic analysis.
Probab=96.44 E-value=0.0058 Score=62.31 Aligned_cols=62 Identities=18% Similarity=0.240 Sum_probs=50.5
Q ss_pred ceEEEEeCCCCCCHHHHHHHHHHhcCCCCCCCceeEEEcCCcccHHHHHHHHhcCCceEEEEecCCC--CccceEEeCC
Q 040896 191 KKVMEIRPCIDWDKGRALEYLLDTFGFNNASDFLPLYIGDDKTDEDAFKVIRHMGRGYPIIVSSVPR--ETKALYSLRD 267 (288)
Q Consensus 191 ~~~ieI~~~~~~sKg~al~~l~~~~~~~~~~~~~vv~~GDs~ND~~Ml~~~~~~~~g~~v~v~na~~--~~~A~~~~~~ 267 (288)
..+-.+.|. .|..-|+.+.++ ++ .|..+||+.||.++|+.+ ..||+|+++.+ +..|+.++.+
T Consensus 581 ~vfAr~~Pe---~K~~iV~~lq~~----G~---vVam~GDGvNDapALk~A-----dVGIAmg~gtdvAk~aADiVLld 644 (867)
T TIGR01524 581 HIFARLTPM---QKSRIIGLLKKA----GH---TVGFLGDGINDAPALRKA-----DVGISVDTAADIAKEASDIILLE 644 (867)
T ss_pred eEEEECCHH---HHHHHHHHHHhC----CC---EEEEECCCcccHHHHHhC-----CEEEEeCCccHHHHHhCCEEEec
Confidence 355667777 999999998764 33 899999999999999999 69999998765 4689988753
No 102
>PLN02954 phosphoserine phosphatase
Probab=96.43 E-value=0.0054 Score=51.94 Aligned_cols=33 Identities=15% Similarity=0.102 Sum_probs=26.3
Q ss_pred CCHHHHHHHHHHhhcC-CEEEEcCCChhhHhhhc
Q 040896 44 MSDTMRMAVHEVAHFF-PTAIVSGRCLDKVSRFV 76 (288)
Q Consensus 44 i~~~~~~aL~~L~~~~-~v~i~TGR~~~~l~~~~ 76 (288)
+.|...+.|+.|++.+ +++|+||.+...+...+
T Consensus 85 l~pg~~e~l~~l~~~g~~~~IvS~~~~~~i~~~l 118 (224)
T PLN02954 85 LSPGIPELVKKLRARGTDVYLVSGGFRQMIAPVA 118 (224)
T ss_pred CCccHHHHHHHHHHCCCEEEEECCCcHHHHHHHH
Confidence 4577788888888875 89999999988777654
No 103
>PRK11033 zntA zinc/cadmium/mercury/lead-transporting ATPase; Provisional
Probab=96.37 E-value=0.0037 Score=62.65 Aligned_cols=66 Identities=23% Similarity=0.189 Sum_probs=50.0
Q ss_pred EEEeCCCCCCHHHHHHHHHHhcCCCCCCCceeEEEcCCcccHHHHHHHHhcCCceEEEEecCCCC--ccceEEeC--Chh
Q 040896 194 MEIRPCIDWDKGRALEYLLDTFGFNNASDFLPLYIGDDKTDEDAFKVIRHMGRGYPIIVSSVPRE--TKALYSLR--DPD 269 (288)
Q Consensus 194 ieI~~~~~~sKg~al~~l~~~~~~~~~~~~~vv~~GDs~ND~~Ml~~~~~~~~g~~v~v~na~~~--~~A~~~~~--~~~ 269 (288)
.+..|. +|...++.+.+. . .|+++||+.||.++|+.+ +.||+|+++.+. ..|++++. +..
T Consensus 611 ~~~~p~---~K~~~v~~l~~~-----~---~v~mvGDgiNDapAl~~A-----~vgia~g~~~~~a~~~adivl~~~~l~ 674 (741)
T PRK11033 611 AGLLPE---DKVKAVTELNQH-----A---PLAMVGDGINDAPAMKAA-----SIGIAMGSGTDVALETADAALTHNRLR 674 (741)
T ss_pred cCCCHH---HHHHHHHHHhcC-----C---CEEEEECCHHhHHHHHhC-----CeeEEecCCCHHHHHhCCEEEecCCHH
Confidence 445555 899988887632 3 899999999999999999 799999988653 46888764 455
Q ss_pred HHHHHH
Q 040896 270 EVMSFL 275 (288)
Q Consensus 270 ~v~~~l 275 (288)
++...+
T Consensus 675 ~l~~~i 680 (741)
T PRK11033 675 GLAQMI 680 (741)
T ss_pred HHHHHH
Confidence 555444
No 104
>TIGR01523 ATPase-IID_K-Na potassium and/or sodium efflux P-type ATPase, fungal-type. The Leishmania sequence (GP|3192903), which falls between trusted and noise in this model, may very well turn out to be an active potassium pump.
Probab=96.36 E-value=0.0046 Score=64.22 Aligned_cols=68 Identities=18% Similarity=0.219 Sum_probs=51.0
Q ss_pred EEEEeCCCCCCHHHHHHHHHHhcCCCCCCCceeEEEcCCcccHHHHHHHHhcCCceEEEEe-cCCC--CccceEEeCC--
Q 040896 193 VMEIRPCIDWDKGRALEYLLDTFGFNNASDFLPLYIGDDKTDEDAFKVIRHMGRGYPIIVS-SVPR--ETKALYSLRD-- 267 (288)
Q Consensus 193 ~ieI~~~~~~sKg~al~~l~~~~~~~~~~~~~vv~~GDs~ND~~Ml~~~~~~~~g~~v~v~-na~~--~~~A~~~~~~-- 267 (288)
+-.+.|. .|..-|+.+.+. +. .|.++||+.||.+||+.+ ..||+|| ++.+ +..|++++.+
T Consensus 726 ~ar~sP~---~K~~iV~~lq~~----g~---~Vam~GDGvNDapaLk~A-----dVGIAmg~~gt~vak~aADivl~dd~ 790 (1053)
T TIGR01523 726 IARCAPQ---TKVKMIEALHRR----KA---FCAMTGDGVNDSPSLKMA-----NVGIAMGINGSDVAKDASDIVLSDDN 790 (1053)
T ss_pred EEecCHH---HHHHHHHHHHhc----CC---eeEEeCCCcchHHHHHhC-----CccEecCCCccHHHHHhcCEEEecCC
Confidence 4555566 888888888765 33 789999999999999999 6999998 5554 4689998864
Q ss_pred hhHHHHHH
Q 040896 268 PDEVMSFL 275 (288)
Q Consensus 268 ~~~v~~~l 275 (288)
-..+.+.+
T Consensus 791 f~~I~~~i 798 (1053)
T TIGR01523 791 FASILNAI 798 (1053)
T ss_pred HHHHHHHH
Confidence 44444443
No 105
>PRK13223 phosphoglycolate phosphatase; Provisional
Probab=96.30 E-value=0.0098 Score=52.28 Aligned_cols=68 Identities=19% Similarity=0.214 Sum_probs=53.1
Q ss_pred CCCHHHHHHHHHHhcCCCCCCCceeEEEcCCcccHHHHHHHHhcCCce-EEEEecCC--C----CccceEEeCChhHHHH
Q 040896 201 DWDKGRALEYLLDTFGFNNASDFLPLYIGDDKTDEDAFKVIRHMGRGY-PIIVSSVP--R----ETKALYSLRDPDEVMS 273 (288)
Q Consensus 201 ~~sKg~al~~l~~~~~~~~~~~~~vv~~GDs~ND~~Ml~~~~~~~~g~-~v~v~na~--~----~~~A~~~~~~~~~v~~ 273 (288)
+-.+...++.+++.+|++++ ++++|||+.||+.+.+.+ |+ ++.|.++. . +..+++++++..++..
T Consensus 156 ~Kp~p~~~~~~~~~~g~~~~---~~l~IGD~~~Di~aA~~a-----Gi~~i~v~~G~~~~~~l~~~~~~~vi~~l~el~~ 227 (272)
T PRK13223 156 KKPDPAALLFVMKMAGVPPS---QSLFVGDSRSDVLAAKAA-----GVQCVALSYGYNHGRPIAEESPALVIDDLRALLP 227 (272)
T ss_pred CCCCcHHHHHHHHHhCCChh---HEEEECCCHHHHHHHHHC-----CCeEEEEecCCCCchhhhhcCCCEEECCHHHHHH
Confidence 45678899999999999887 999999999999998888 54 56665542 1 2368888988888776
Q ss_pred HHH
Q 040896 274 FLR 276 (288)
Q Consensus 274 ~l~ 276 (288)
++.
T Consensus 228 ~~~ 230 (272)
T PRK13223 228 GCA 230 (272)
T ss_pred HHh
Confidence 544
No 106
>TIGR00338 serB phosphoserine phosphatase SerB. Phosphoserine phosphatase catalyzes the reaction 3-phospho-serine + H2O = L-serine + phosphate. It catalyzes the last of three steps in the biosynthesis of serine from D-3-phosphoglycerate. Note that this enzyme acts on free phosphoserine, not on phosphoserine residues of phosphoproteins.
Probab=96.30 E-value=0.0073 Score=50.95 Aligned_cols=34 Identities=12% Similarity=-0.009 Sum_probs=24.1
Q ss_pred CCCHHHHHHHHHHhhcC-CEEEEcCCChhhHhhhc
Q 040896 43 FMSDTMRMAVHEVAHFF-PTAIVSGRCLDKVSRFV 76 (288)
Q Consensus 43 ~i~~~~~~aL~~L~~~~-~v~i~TGR~~~~l~~~~ 76 (288)
.+.+.+.+.|++|++.+ +++|+||.+...+...+
T Consensus 85 ~~~~g~~~~l~~l~~~g~~~~IvS~~~~~~~~~~l 119 (219)
T TIGR00338 85 PLTEGAEELVKTLKEKGYKVAVISGGFDLFAEHVK 119 (219)
T ss_pred CcCCCHHHHHHHHHHCCCEEEEECCCcHHHHHHHH
Confidence 34566777888888774 78888888776655543
No 107
>PRK13225 phosphoglycolate phosphatase; Provisional
Probab=96.28 E-value=0.012 Score=51.76 Aligned_cols=72 Identities=25% Similarity=0.374 Sum_probs=56.4
Q ss_pred CCHHHHHHHHHHhcCCCCCCCceeEEEcCCcccHHHHHHHHhcCCceEEEEecCC--C----CccceEEeCChhHHHHHH
Q 040896 202 WDKGRALEYLLDTFGFNNASDFLPLYIGDDKTDEDAFKVIRHMGRGYPIIVSSVP--R----ETKALYSLRDPDEVMSFL 275 (288)
Q Consensus 202 ~sKg~al~~l~~~~~~~~~~~~~vv~~GDs~ND~~Ml~~~~~~~~g~~v~v~na~--~----~~~A~~~~~~~~~v~~~l 275 (288)
..|..++..++++++++++ ++++|||+.+|+.+-+.+. -.+|.+..+. . ...|++++.+..++..++
T Consensus 195 ~~k~~~~~~~l~~~~~~p~---~~l~IGDs~~Di~aA~~AG----~~~I~v~~g~~~~~~l~~~~ad~~i~~~~eL~~~~ 267 (273)
T PRK13225 195 LSKRRALSQLVAREGWQPA---AVMYVGDETRDVEAARQVG----LIAVAVTWGFNDRQSLVAACPDWLLETPSDLLQAV 267 (273)
T ss_pred CCCHHHHHHHHHHhCcChh---HEEEECCCHHHHHHHHHCC----CeEEEEecCCCCHHHHHHCCCCEEECCHHHHHHHH
Confidence 3577899999999999877 9999999999999888872 2455555442 1 236899999999999988
Q ss_pred HHHHH
Q 040896 276 RRLAR 280 (288)
Q Consensus 276 ~~~~~ 280 (288)
.++++
T Consensus 268 ~~~~~ 272 (273)
T PRK13225 268 TQLMR 272 (273)
T ss_pred HHHhc
Confidence 88764
No 108
>PRK06769 hypothetical protein; Validated
Probab=96.24 E-value=0.0041 Score=50.81 Aligned_cols=49 Identities=12% Similarity=0.145 Sum_probs=36.5
Q ss_pred CcEEEEEecCCccccCcC--CCCCCCCCHHHHHHHHHHhhcC-CEEEEcCCC
Q 040896 20 KKIVVFLDYDGTLSPIVE--DPDKAFMSDTMRMAVHEVAHFF-PTAIVSGRC 68 (288)
Q Consensus 20 ~~~li~~DlDGTL~~~~~--~~~~~~i~~~~~~aL~~L~~~~-~v~i~TGR~ 68 (288)
..++|++|.||||-.+.. .+..-.+-|.+.+.|++|++.+ +++|+|+.+
T Consensus 3 ~~~~~~~d~d~~~~~~~~~~~~~~~~~~pgv~e~L~~Lk~~G~~l~I~Tn~~ 54 (173)
T PRK06769 3 NIQAIFIDRDGTIGGDTTIHYPGSFTLFPFTKASLQKLKANHIKIFSFTNQP 54 (173)
T ss_pred CCcEEEEeCCCcccCCCCCCCHHHeEECCCHHHHHHHHHHCCCEEEEEECCc
Confidence 578999999999965421 0113345688999999999885 888888765
No 109
>PRK01122 potassium-transporting ATPase subunit B; Provisional
Probab=96.24 E-value=0.0063 Score=60.00 Aligned_cols=68 Identities=16% Similarity=0.175 Sum_probs=53.2
Q ss_pred EEEEeCCCCCCHHHHHHHHHHhcCCCCCCCceeEEEcCCcccHHHHHHHHhcCCceEEEEecCCC--CccceEEeC--Ch
Q 040896 193 VMEIRPCIDWDKGRALEYLLDTFGFNNASDFLPLYIGDDKTDEDAFKVIRHMGRGYPIIVSSVPR--ETKALYSLR--DP 268 (288)
Q Consensus 193 ~ieI~~~~~~sKg~al~~l~~~~~~~~~~~~~vv~~GDs~ND~~Ml~~~~~~~~g~~v~v~na~~--~~~A~~~~~--~~ 268 (288)
+-+..|. +|..-|+.+.++ ++ .|...||+.||-|+|+.+ ..||+|+++.+ +..|+.++- +.
T Consensus 488 ~A~~~Pe---dK~~iV~~lQ~~----G~---~VaMtGDGvNDAPALa~A-----DVGIAMgsGTdvAkeAADiVLldd~~ 552 (679)
T PRK01122 488 LAEATPE---DKLALIRQEQAE----GR---LVAMTGDGTNDAPALAQA-----DVGVAMNSGTQAAKEAGNMVDLDSNP 552 (679)
T ss_pred EccCCHH---HHHHHHHHHHHc----CC---eEEEECCCcchHHHHHhC-----CEeEEeCCCCHHHHHhCCEEEeCCCH
Confidence 4566677 899999998765 33 789999999999999999 69999998866 468998874 35
Q ss_pred hHHHHHH
Q 040896 269 DEVMSFL 275 (288)
Q Consensus 269 ~~v~~~l 275 (288)
..+.+.+
T Consensus 553 s~Iv~av 559 (679)
T PRK01122 553 TKLIEVV 559 (679)
T ss_pred HHHHHHH
Confidence 5555444
No 110
>PTZ00445 p36-lilke protein; Provisional
Probab=96.20 E-value=0.012 Score=49.26 Aligned_cols=58 Identities=10% Similarity=0.011 Sum_probs=41.1
Q ss_pred HHHhh-cCCcEEEEEecCCcccc-CcCCCCCC---------CCCHHHHHHHHHHhhcC-CEEEEcCCChh
Q 040896 13 MVAAA-KGKKIVVFLDYDGTLSP-IVEDPDKA---------FMSDTMRMAVHEVAHFF-PTAIVSGRCLD 70 (288)
Q Consensus 13 ~~~~~-~~~~~li~~DlDGTL~~-~~~~~~~~---------~i~~~~~~aL~~L~~~~-~v~i~TGR~~~ 70 (288)
++... ..+.|+|++|+|.||+. |.....+. .++|+....+.+|++.+ +|+|+|=-.-.
T Consensus 34 ~v~~L~~~GIk~Va~D~DnTlI~~HsgG~~~~~~~~~~~~~~~tpefk~~~~~l~~~~I~v~VVTfSd~~ 103 (219)
T PTZ00445 34 FVDLLNECGIKVIASDFDLTMITKHSGGYIDPDNDDIRVLTSVTPDFKILGKRLKNSNIKISVVTFSDKE 103 (219)
T ss_pred HHHHHHHcCCeEEEecchhhhhhhhcccccCCCcchhhhhccCCHHHHHHHHHHHHCCCeEEEEEccchh
Confidence 33443 56799999999999998 21111122 26889999999999874 89999965543
No 111
>TIGR01522 ATPase-IIA2_Ca golgi membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1 the former of which is modelled by TIGR01116.
Probab=96.20 E-value=0.0078 Score=61.59 Aligned_cols=69 Identities=17% Similarity=0.180 Sum_probs=50.3
Q ss_pred eEEEEeCCCCCCHHHHHHHHHHhcCCCCCCCceeEEEcCCcccHHHHHHHHhcCCceEEEEec-CCC--CccceEEeC--
Q 040896 192 KVMEIRPCIDWDKGRALEYLLDTFGFNNASDFLPLYIGDDKTDEDAFKVIRHMGRGYPIIVSS-VPR--ETKALYSLR-- 266 (288)
Q Consensus 192 ~~ieI~~~~~~sKg~al~~l~~~~~~~~~~~~~vv~~GDs~ND~~Ml~~~~~~~~g~~v~v~n-a~~--~~~A~~~~~-- 266 (288)
.+-...|. .|..-++.+.+. ++ .|.++||+.||.+|++.+ +.||+||+ +.+ +..|++++.
T Consensus 597 Vfar~~P~---~K~~iv~~lq~~----g~---~v~mvGDGvND~pAl~~A-----dVGia~g~~g~~va~~aaDivl~dd 661 (884)
T TIGR01522 597 VFARASPE---HKMKIVKALQKR----GD---VVAMTGDGVNDAPALKLA-----DIGVAMGQTGTDVAKEAADMILTDD 661 (884)
T ss_pred EEEECCHH---HHHHHHHHHHHC----CC---EEEEECCCcccHHHHHhC-----CeeEecCCCcCHHHHHhcCEEEcCC
Confidence 34445555 787777776653 34 899999999999999999 79999984 443 357899984
Q ss_pred ChhHHHHHH
Q 040896 267 DPDEVMSFL 275 (288)
Q Consensus 267 ~~~~v~~~l 275 (288)
+...+.+.+
T Consensus 662 ~~~~i~~~i 670 (884)
T TIGR01522 662 DFATILSAI 670 (884)
T ss_pred CHHHHHHHH
Confidence 355555544
No 112
>PRK10517 magnesium-transporting ATPase MgtA; Provisional
Probab=96.13 E-value=0.01 Score=60.78 Aligned_cols=62 Identities=19% Similarity=0.231 Sum_probs=51.3
Q ss_pred ceEEEEeCCCCCCHHHHHHHHHHhcCCCCCCCceeEEEcCCcccHHHHHHHHhcCCceEEEEecCCC--CccceEEeCC
Q 040896 191 KKVMEIRPCIDWDKGRALEYLLDTFGFNNASDFLPLYIGDDKTDEDAFKVIRHMGRGYPIIVSSVPR--ETKALYSLRD 267 (288)
Q Consensus 191 ~~~ieI~~~~~~sKg~al~~l~~~~~~~~~~~~~vv~~GDs~ND~~Ml~~~~~~~~g~~v~v~na~~--~~~A~~~~~~ 267 (288)
..|-.+.|. +|..-|+.+.++ +. .|...||+.||.++|+.+ ..||+|+++.+ +..|+.++.+
T Consensus 616 ~VfAr~sPe---~K~~IV~~Lq~~----G~---vVam~GDGvNDaPALk~A-----DVGIAmg~gtdvAkeaADiVLld 679 (902)
T PRK10517 616 TLFARLTPM---HKERIVTLLKRE----GH---VVGFMGDGINDAPALRAA-----DIGISVDGAVDIAREAADIILLE 679 (902)
T ss_pred cEEEEcCHH---HHHHHHHHHHHC----CC---EEEEECCCcchHHHHHhC-----CEEEEeCCcCHHHHHhCCEEEec
Confidence 456677787 999999988764 33 889999999999999999 69999998865 4689998753
No 113
>COG4030 Uncharacterized protein conserved in archaea [Function unknown]
Probab=96.12 E-value=0.03 Score=47.12 Aligned_cols=57 Identities=19% Similarity=0.229 Sum_probs=39.8
Q ss_pred CCCHHHHHHHHHHhcCCCCCCCceeEEEcCCcccHHHHHHHHhcCCceEEEE-ecCCCCccce
Q 040896 201 DWDKGRALEYLLDTFGFNNASDFLPLYIGDDKTDEDAFKVIRHMGRGYPIIV-SSVPRETKAL 262 (288)
Q Consensus 201 ~~sKg~al~~l~~~~~~~~~~~~~vv~~GDs~ND~~Ml~~~~~~~~g~~v~v-~na~~~~~A~ 262 (288)
|--|..-++.+++.-+++- .++++|||..|.+||+.++..| |.+|+- ||-..-..|+
T Consensus 189 gg~ka~i~e~~~ele~~d~----sa~~VGDSItDv~ml~~~rgrG-glAvaFNGNeYal~eAd 246 (315)
T COG4030 189 GGEKAKIMEGYCELEGIDF----SAVVVGDSITDVKMLEAARGRG-GLAVAFNGNEYALKEAD 246 (315)
T ss_pred CcchhHHHHHHHhhcCCCc----ceeEecCcccchHHHHHhhccC-ceEEEecCCcccccccc
Confidence 5566777777777767653 5799999999999999998654 566554 4433223444
No 114
>PRK15122 magnesium-transporting ATPase; Provisional
Probab=96.11 E-value=0.011 Score=60.51 Aligned_cols=62 Identities=23% Similarity=0.237 Sum_probs=51.7
Q ss_pred ceEEEEeCCCCCCHHHHHHHHHHhcCCCCCCCceeEEEcCCcccHHHHHHHHhcCCceEEEEecCCC--CccceEEeCC
Q 040896 191 KKVMEIRPCIDWDKGRALEYLLDTFGFNNASDFLPLYIGDDKTDEDAFKVIRHMGRGYPIIVSSVPR--ETKALYSLRD 267 (288)
Q Consensus 191 ~~~ieI~~~~~~sKg~al~~l~~~~~~~~~~~~~vv~~GDs~ND~~Ml~~~~~~~~g~~v~v~na~~--~~~A~~~~~~ 267 (288)
..|-.+.|. .|..-|+.|.++ ++ .|...||+.||.|+|+.+ ..||+||++.+ +..|+.++-+
T Consensus 616 ~VfAr~sPe---~K~~iV~~Lq~~----G~---vVamtGDGvNDaPALk~A-----DVGIAmg~gtdvAkeaADiVLld 679 (903)
T PRK15122 616 TVFAKLTPL---QKSRVLKALQAN----GH---TVGFLGDGINDAPALRDA-----DVGISVDSGADIAKESADIILLE 679 (903)
T ss_pred CEEEEeCHH---HHHHHHHHHHhC----CC---EEEEECCCchhHHHHHhC-----CEEEEeCcccHHHHHhcCEEEec
Confidence 467778888 999999998764 33 889999999999999999 69999998765 5689998753
No 115
>PRK09552 mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase; Reviewed
Probab=96.09 E-value=0.011 Score=50.09 Aligned_cols=69 Identities=17% Similarity=0.087 Sum_probs=48.5
Q ss_pred CCCHHHHHHHHHHhcCCCCCCCceeEEEcCCcccHHHHHHHHhcCCceEEEEecCC----CCccceEEeCChhHHHHHHH
Q 040896 201 DWDKGRALEYLLDTFGFNNASDFLPLYIGDDKTDEDAFKVIRHMGRGYPIIVSSVP----RETKALYSLRDPDEVMSFLR 276 (288)
Q Consensus 201 ~~sKg~al~~l~~~~~~~~~~~~~vv~~GDs~ND~~Ml~~~~~~~~g~~v~v~na~----~~~~A~~~~~~~~~v~~~l~ 276 (288)
|..|..+++. ++...+ +++++|||.||+.|.+.+ |..++-+.-. ....+.+..++..++.+.|+
T Consensus 146 ~~~K~~~l~~----~~~~~~---~~i~iGDs~~Di~aa~~A-----g~~~a~~~l~~~~~~~~~~~~~~~~f~ei~~~l~ 213 (219)
T PRK09552 146 GCCKPSLIRK----LSDTND---FHIVIGDSITDLEAAKQA-----DKVFARDFLITKCEELGIPYTPFETFHDVQTELK 213 (219)
T ss_pred CCchHHHHHH----hccCCC---CEEEEeCCHHHHHHHHHC-----CcceeHHHHHHHHHHcCCCccccCCHHHHHHHHH
Confidence 3468876665 455555 899999999999999887 6755522101 12356566688999999998
Q ss_pred HHHHH
Q 040896 277 RLARW 281 (288)
Q Consensus 277 ~~~~~ 281 (288)
++.+.
T Consensus 214 ~~~~~ 218 (219)
T PRK09552 214 HLLEV 218 (219)
T ss_pred HHhcc
Confidence 88754
No 116
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=96.05 E-value=0.017 Score=55.40 Aligned_cols=52 Identities=19% Similarity=0.192 Sum_probs=38.5
Q ss_pred cCCcEEEEEecCCccccCcC------CCCCCC-CCHHHHHHHHHHhhcC-CEEEEcCCCh
Q 040896 18 KGKKIVVFLDYDGTLSPIVE------DPDKAF-MSDTMRMAVHEVAHFF-PTAIVSGRCL 69 (288)
Q Consensus 18 ~~~~~li~~DlDGTL~~~~~------~~~~~~-i~~~~~~aL~~L~~~~-~v~i~TGR~~ 69 (288)
..+.|++|||+||||..... ++++-+ +.+.+.++|++|++.+ .++|+|..+-
T Consensus 165 ~~~~Kia~fD~DGTLi~t~sg~~~~~~~~d~~~l~pgV~e~L~~L~~~Gy~IvIvTNQ~g 224 (526)
T TIGR01663 165 KGQEKIAGFDLDGTIIKTKSGKVFPKGPDDWQIIFPEIPEKLKELEADGFKICIFTNQGG 224 (526)
T ss_pred CccCcEEEEECCCCccccCCCccCCCCHHHeeecccCHHHHHHHHHHCCCEEEEEECCcc
Confidence 35679999999999996321 111212 4678899999999996 8999998655
No 117
>PF03031 NIF: NLI interacting factor-like phosphatase; InterPro: IPR004274 The function of this domain is unclear. It is found in proteins of diverse function including phosphatases some of which may be active in active in ternary elongation complexes and a number of NLI interacting factors. In the phospatases this domain is often present N-terminal to the BRCT domain (IPR001357 from INTERPRO).; GO: 0005515 protein binding; PDB: 3L0Y_A 2GHQ_A 3PGL_A 3L0C_B 1TA0_A 2GHT_A 3L0B_B 1T9Z_A 3QLE_A 2Q5E_E ....
Probab=96.04 E-value=0.0076 Score=48.31 Aligned_cols=55 Identities=15% Similarity=0.192 Sum_probs=39.0
Q ss_pred EEEEEecCCccccCcCCCCC--------------CCCCHHHHHHHHHHhhcCCEEEEcCCChhhHhhhc
Q 040896 22 IVVFLDYDGTLSPIVEDPDK--------------AFMSDTMRMAVHEVAHFFPTAIVSGRCLDKVSRFV 76 (288)
Q Consensus 22 ~li~~DlDGTL~~~~~~~~~--------------~~i~~~~~~aL~~L~~~~~v~i~TGR~~~~l~~~~ 76 (288)
|++++||||||+.....+.. -.+.|.+.+.|+.+.+...++|.|..+...+...+
T Consensus 1 k~LVlDLD~TLv~~~~~~~~~~~~~~~~~~~~~~v~~RP~l~~FL~~l~~~~ev~i~T~~~~~ya~~v~ 69 (159)
T PF03031_consen 1 KTLVLDLDGTLVHSSSKSPLPYDFKIIDQRGGYYVKLRPGLDEFLEELSKHYEVVIWTSASEEYAEPVL 69 (159)
T ss_dssp EEEEEE-CTTTEEEESSTCTT-SEEEETEEEEEEEEE-TTHHHHHHHHHHHCEEEEE-SS-HHHHHHHH
T ss_pred CEEEEeCCCcEEEEeecCCCCcccceeccccceeEeeCchHHHHHHHHHHhceEEEEEeehhhhhhHHH
Confidence 68999999999985432111 12568899999999877899999999988777764
No 118
>KOG0210 consensus P-type ATPase [Inorganic ion transport and metabolism]
Probab=96.02 E-value=0.0057 Score=59.05 Aligned_cols=62 Identities=19% Similarity=0.207 Sum_probs=44.0
Q ss_pred CHHHHHHHHHHhcCCCCCCCceeEEEcCCcccHHHHHHHHhcCCceEEEEecCCCC-ccceEEeCChhHHHH
Q 040896 203 DKGRALEYLLDTFGFNNASDFLPLYIGDDKTDEDAFKVIRHMGRGYPIIVSSVPRE-TKALYSLRDPDEVMS 273 (288)
Q Consensus 203 sKg~al~~l~~~~~~~~~~~~~vv~~GDs~ND~~Ml~~~~~~~~g~~v~v~na~~~-~~A~~~~~~~~~v~~ 273 (288)
-|+.-++.|.++-+ . .|.|+||+.||++|++.++- |.||-=..+.+. -+|+|.++--.-|.+
T Consensus 768 QKA~v~~llq~~t~-k-----rvc~IGDGGNDVsMIq~A~~---GiGI~gkEGkQASLAADfSItqF~Hv~r 830 (1051)
T KOG0210|consen 768 QKAQVVRLLQKKTG-K-----RVCAIGDGGNDVSMIQAADV---GIGIVGKEGKQASLAADFSITQFSHVSR 830 (1051)
T ss_pred HHHHHHHHHHHhhC-c-----eEEEEcCCCccchheeeccc---ceeeecccccccchhccccHHHHHHHHH
Confidence 78888888888777 2 99999999999999999963 777743323333 378877653333333
No 119
>PRK09552 mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase; Reviewed
Probab=95.98 E-value=0.0074 Score=51.16 Aligned_cols=15 Identities=40% Similarity=0.786 Sum_probs=13.2
Q ss_pred cEEEEEecCCccccC
Q 040896 21 KIVVFLDYDGTLSPI 35 (288)
Q Consensus 21 ~~li~~DlDGTL~~~ 35 (288)
+++++||+||||+..
T Consensus 3 ~~~vifDfDgTi~~~ 17 (219)
T PRK09552 3 SIQIFCDFDGTITNN 17 (219)
T ss_pred CcEEEEcCCCCCCcc
Confidence 469999999999983
No 120
>TIGR01517 ATPase-IIB_Ca plasma-membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIB based on a phylogenetic analysis which distinguishes this group from the Type IIA SERCA calcium pump. A separate analysis divides Type IIA into sub-types (SERCA and PMR1), which are modelled by the corresponding TIGR01116 and TIGR01522. This model is well separated from the two others.
Probab=95.97 E-value=0.0097 Score=61.31 Aligned_cols=69 Identities=19% Similarity=0.167 Sum_probs=53.2
Q ss_pred eEEEEeCCCCCCHHHHHHHHHHhcCCCCCCCceeEEEcCCcccHHHHHHHHhcCCceEEEEe-cCCC--CccceEEeCC-
Q 040896 192 KVMEIRPCIDWDKGRALEYLLDTFGFNNASDFLPLYIGDDKTDEDAFKVIRHMGRGYPIIVS-SVPR--ETKALYSLRD- 267 (288)
Q Consensus 192 ~~ieI~~~~~~sKg~al~~l~~~~~~~~~~~~~vv~~GDs~ND~~Ml~~~~~~~~g~~v~v~-na~~--~~~A~~~~~~- 267 (288)
.+-.+.|. .|..-|+.+.++ +. .|..+||+.||.++|+.+ ..||+|| ++.+ +..|++++.+
T Consensus 648 Vfar~sPe---~K~~iV~~lq~~----g~---vVam~GDGvNDapALk~A-----dVGIAmg~~gtdvAk~aADivL~dd 712 (941)
T TIGR01517 648 VLARSSPL---DKQLLVLMLKDM----GE---VVAVTGDGTNDAPALKLA-----DVGFSMGISGTEVAKEASDIILLDD 712 (941)
T ss_pred EEEECCHH---HHHHHHHHHHHC----CC---EEEEECCCCchHHHHHhC-----CcceecCCCccHHHHHhCCEEEecC
Confidence 45677777 999999998764 33 889999999999999999 5999999 6655 4688998863
Q ss_pred -hhHHHHHH
Q 040896 268 -PDEVMSFL 275 (288)
Q Consensus 268 -~~~v~~~l 275 (288)
-..+.+.+
T Consensus 713 ~f~~I~~~i 721 (941)
T TIGR01517 713 NFASIVRAV 721 (941)
T ss_pred CHHHHHHHH
Confidence 34444444
No 121
>TIGR01106 ATPase-IIC_X-K sodium or proton efflux -- potassium uptake antiporter, P-type ATPase, alpha subunit. Sequences from Blastocladiella emersonii (GP|6636502, GP|6636502 and PIR|T43025), C. elegans (GP|2315419, GP|6671808 and PIR|T31763) and Drosophila melanogaster (GP|7291424) score below trusted cutoff, apparently due to long branch length (excessive divergence from the last common ancestor) as evidenced by a phylogenetic tree. Experimental evidence is needed to determine whether these sequences represent ATPases with conserved function. Aside from fragments, other sequences between trusted and noise appear to be bacterial ATPases of unclear lineage, but most likely calcium pumps.
Probab=95.95 E-value=0.0088 Score=61.97 Aligned_cols=61 Identities=21% Similarity=0.154 Sum_probs=46.7
Q ss_pred eEEEEeCCCCCCHHHHHHHHHHhcCCCCCCCceeEEEcCCcccHHHHHHHHhcCCceEEEEecC-CC--CccceEEeCC
Q 040896 192 KVMEIRPCIDWDKGRALEYLLDTFGFNNASDFLPLYIGDDKTDEDAFKVIRHMGRGYPIIVSSV-PR--ETKALYSLRD 267 (288)
Q Consensus 192 ~~ieI~~~~~~sKg~al~~l~~~~~~~~~~~~~vv~~GDs~ND~~Ml~~~~~~~~g~~v~v~na-~~--~~~A~~~~~~ 267 (288)
.+-.+.|. .|..-|+.+.+. | . .|.++||+.||.+||+.+ ..||+||+. .+ +.+|++++.+
T Consensus 663 VfaR~sPe---qK~~IV~~lq~~-g---~---vv~~~GDG~ND~paLk~A-----dVGiamg~~G~~vak~aADivL~d 726 (997)
T TIGR01106 663 VFARTSPQ---QKLIIVEGCQRQ-G---A---IVAVTGDGVNDSPALKKA-----DIGVAMGIAGSDVSKQAADMILLD 726 (997)
T ss_pred EEEECCHH---HHHHHHHHHHHC-C---C---EEEEECCCcccHHHHhhC-----CcceecCCcccHHHHHhhceEEec
Confidence 34455555 788888777653 3 3 789999999999999999 699999964 43 4688999864
No 122
>PRK14010 potassium-transporting ATPase subunit B; Provisional
Probab=95.93 E-value=0.0097 Score=58.66 Aligned_cols=68 Identities=19% Similarity=0.193 Sum_probs=52.6
Q ss_pred EEEEeCCCCCCHHHHHHHHHHhcCCCCCCCceeEEEcCCcccHHHHHHHHhcCCceEEEEecCCC--CccceEEeC--Ch
Q 040896 193 VMEIRPCIDWDKGRALEYLLDTFGFNNASDFLPLYIGDDKTDEDAFKVIRHMGRGYPIIVSSVPR--ETKALYSLR--DP 268 (288)
Q Consensus 193 ~ieI~~~~~~sKg~al~~l~~~~~~~~~~~~~vv~~GDs~ND~~Ml~~~~~~~~g~~v~v~na~~--~~~A~~~~~--~~ 268 (288)
+-++.|. +|..-++.+.++ ++ .|...||+.||.|.|+.+ ..||+|+++.+ +..|+.++- +.
T Consensus 484 ~A~~~Pe---dK~~iV~~lQ~~----G~---~VaMtGDGvNDAPALa~A-----DVGIAMgsGTdvAkeAADiVLldd~l 548 (673)
T PRK14010 484 VAECKPE---DKINVIREEQAK----GH---IVAMTGDGTNDAPALAEA-----NVGLAMNSGTMSAKEAANLIDLDSNP 548 (673)
T ss_pred EcCCCHH---HHHHHHHHHHhC----CC---EEEEECCChhhHHHHHhC-----CEEEEeCCCCHHHHHhCCEEEcCCCH
Confidence 4566676 899999988764 33 788999999999999999 69999998866 468998875 34
Q ss_pred hHHHHHH
Q 040896 269 DEVMSFL 275 (288)
Q Consensus 269 ~~v~~~l 275 (288)
..+.+.+
T Consensus 549 s~Iv~av 555 (673)
T PRK14010 549 TKLMEVV 555 (673)
T ss_pred HHHHHHH
Confidence 4444444
No 123
>TIGR01456 CECR5 HAD-superfamily class IIA hydrolase, TIGR01456, CECR5. The Schizosaccharomyces pombe sequence (EGAD|138276) is annotated as "phosphatidyl synthase," however this is due entirely to a C-terminal region of the protein (outside the region of similarity of this model) which is highly homologous to a family of CDP-alcohol phosphatidyltransferases. (Thus, the annotation of GP|4226073 from C. elegans as similar to phosphatidyl synthase, is a mistake as this gene does not contain the C-terminal portion). The physical connection of the phosphatidyl synthase and the HAD-superfamily hydrolase domain in S. pombe may, however, be an important clue to the substrate for the hydrolases in this equivalog.
Probab=95.93 E-value=0.015 Score=52.43 Aligned_cols=46 Identities=15% Similarity=0.056 Sum_probs=34.4
Q ss_pred EEEEecCCccccCcCCCCCCCCCHHHHHHHHHHhhc----C-CEEEEc---CCChhhHhh
Q 040896 23 VVFLDYDGTLSPIVEDPDKAFMSDTMRMAVHEVAHF----F-PTAIVS---GRCLDKVSR 74 (288)
Q Consensus 23 li~~DlDGTL~~~~~~~~~~~i~~~~~~aL~~L~~~----~-~v~i~T---GR~~~~l~~ 74 (288)
.++||+||||.. ...+-+...++|+.|... + ++.++| |++......
T Consensus 2 ~~ifD~DGvL~~------g~~~i~ga~eal~~L~~~~~~~g~~~~flTNn~g~s~~~~~~ 55 (321)
T TIGR01456 2 GFAFDIDGVLFR------GKKPIAGASDALRRLNRNQGQLKIPYIFLTNGGGFSERARAE 55 (321)
T ss_pred EEEEeCcCceEC------CccccHHHHHHHHHHhccccccCCCEEEEecCCCCCHHHHHH
Confidence 589999999998 234578899999999985 4 666655 666655333
No 124
>TIGR01261 hisB_Nterm histidinol-phosphatase. This model describes histidinol phosphatase. All known examples in the scope of this model are bifunctional proteins with a histidinol phosphatase domain followed by an imidazoleglycerol-phosphate dehydratase domain. These enzymatic domains catalyze the ninth and seventh steps, respectively, of histidine biosynthesis.
Probab=95.92 E-value=0.0063 Score=49.15 Aligned_cols=36 Identities=28% Similarity=0.235 Sum_probs=30.6
Q ss_pred CHHHHHHHHHHhcCCCCCCCceeEEEcCCcccHHHHHHH
Q 040896 203 DKGRALEYLLDTFGFNNASDFLPLYIGDDKTDEDAFKVI 241 (288)
Q Consensus 203 sKg~al~~l~~~~~~~~~~~~~vv~~GDs~ND~~Ml~~~ 241 (288)
-|...+..+++.++++++ +++++||+.+|+.+-+.+
T Consensus 104 P~~~~~~~~~~~~~~~~~---e~l~IGD~~~Di~~A~~a 139 (161)
T TIGR01261 104 PKIKLLEPYLKKNLIDKA---RSYVIGDRETDMQLAENL 139 (161)
T ss_pred CCHHHHHHHHHHcCCCHH---HeEEEeCCHHHHHHHHHC
Confidence 456778888888888877 999999999999987777
No 125
>PRK13226 phosphoglycolate phosphatase; Provisional
Probab=95.89 E-value=0.021 Score=48.71 Aligned_cols=65 Identities=17% Similarity=0.116 Sum_probs=49.6
Q ss_pred CHHHHHHHHHHhcCCCCCCCceeEEEcCCcccHHHHHHHHhcCCce-EEEEecCC---C----CccceEEeCChhHHHHH
Q 040896 203 DKGRALEYLLDTFGFNNASDFLPLYIGDDKTDEDAFKVIRHMGRGY-PIIVSSVP---R----ETKALYSLRDPDEVMSF 274 (288)
Q Consensus 203 sKg~al~~l~~~~~~~~~~~~~vv~~GDs~ND~~Ml~~~~~~~~g~-~v~v~na~---~----~~~A~~~~~~~~~v~~~ 274 (288)
-+...+..+++++|++++ ++++|||+.+|+.+-+.+ |+ ++.+.-+. . ...+++++++..++.+.
T Consensus 152 P~p~~~~~~~~~l~~~p~---~~l~IGDs~~Di~aA~~a-----G~~~i~v~~g~~~~~~~~~~~~~~~~i~~~~el~~~ 223 (229)
T PRK13226 152 PHPLPLLVAAERIGVAPT---DCVYVGDDERDILAARAA-----GMPSVAALWGYRLHDDDPLAWQADVLVEQPQLLWNP 223 (229)
T ss_pred CCHHHHHHHHHHhCCChh---hEEEeCCCHHHHHHHHHC-----CCcEEEEeecCCCCCcChhhcCCCeeeCCHHHHHHH
Confidence 456779999999999888 999999999999998888 54 34443321 1 12488999999988776
Q ss_pred H
Q 040896 275 L 275 (288)
Q Consensus 275 l 275 (288)
+
T Consensus 224 ~ 224 (229)
T PRK13226 224 A 224 (229)
T ss_pred h
Confidence 5
No 126
>TIGR01491 HAD-SF-IB-PSPlk HAD-superfamily, subfamily-IB PSPase-like hydrolase, archaeal. This hypothetical equivalog is a member of the IB subfamily (TIGR01488) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this alignment are all from archaeal species. The phylogenetically closest group of sequences to these are phosphoserine phosphatases (TIGR00338). There are no known archaeal phosphoserine phosphatases, and no archaea fall within TIGR00338. It is likely, then, that This model represents the archaeal branch of the PSPase equivalog.
Probab=95.88 E-value=0.017 Score=47.72 Aligned_cols=31 Identities=26% Similarity=0.124 Sum_probs=21.8
Q ss_pred HHHHHHHHHHhhcC-CEEEEcCCChhhHhhhc
Q 040896 46 DTMRMAVHEVAHFF-PTAIVSGRCLDKVSRFV 76 (288)
Q Consensus 46 ~~~~~aL~~L~~~~-~v~i~TGR~~~~l~~~~ 76 (288)
+.+.+.|+.|++++ +++|+|+.....+...+
T Consensus 83 ~g~~e~l~~l~~~g~~~~IvS~~~~~~~~~~l 114 (201)
T TIGR01491 83 DYAEELVRWLKEKGLKTAIVSGGIMCLAKKVA 114 (201)
T ss_pred ccHHHHHHHHHHCCCEEEEEeCCcHHHHHHHH
Confidence 34466677777764 78888888877766654
No 127
>TIGR01686 FkbH FkbH-like domain. The C-terminal portion of this domain is unique to this family (by BLAST).
Probab=95.86 E-value=0.019 Score=51.73 Aligned_cols=57 Identities=21% Similarity=0.133 Sum_probs=43.6
Q ss_pred CcEEEEEecCCccccCcCCCC------CCCCCHHHHHHHHHHhhcC-CEEEEcCCChhhHhhhc
Q 040896 20 KKIVVFLDYDGTLSPIVEDPD------KAFMSDTMRMAVHEVAHFF-PTAIVSGRCLDKVSRFV 76 (288)
Q Consensus 20 ~~~li~~DlDGTL~~~~~~~~------~~~i~~~~~~aL~~L~~~~-~v~i~TGR~~~~l~~~~ 76 (288)
.+|+|++|+|+||..-...+. -....+...++|++|++.+ .++|||..+...+...+
T Consensus 2 ~~k~~v~DlDnTlw~gv~~e~g~~~i~~~~~~~~~~e~L~~L~~~Gi~lai~S~n~~~~a~~~l 65 (320)
T TIGR01686 2 ALKVLVLDLDNTLWGGVLGEDGIDNLNLSPLHKTLQEKIKTLKKQGFLLALASKNDEDDAKKVF 65 (320)
T ss_pred CeEEEEEcCCCCCCCCEEccCCccccccCccHHHHHHHHHHHHhCCCEEEEEcCCCHHHHHHHH
Confidence 369999999999997321111 1123578999999999996 89999999998887765
No 128
>TIGR01647 ATPase-IIIA_H plasma-membrane proton-efflux P-type ATPase. This model describes the plasma membrane proton efflux P-type ATPase found in plants, fungi, protozoa, slime molds and archaea. The best studied representative is from yeast.
Probab=95.86 E-value=0.017 Score=58.07 Aligned_cols=61 Identities=25% Similarity=0.215 Sum_probs=50.0
Q ss_pred eEEEEeCCCCCCHHHHHHHHHHhcCCCCCCCceeEEEcCCcccHHHHHHHHhcCCceEEEEecCCC--CccceEEeCC
Q 040896 192 KVMEIRPCIDWDKGRALEYLLDTFGFNNASDFLPLYIGDDKTDEDAFKVIRHMGRGYPIIVSSVPR--ETKALYSLRD 267 (288)
Q Consensus 192 ~~ieI~~~~~~sKg~al~~l~~~~~~~~~~~~~vv~~GDs~ND~~Ml~~~~~~~~g~~v~v~na~~--~~~A~~~~~~ 267 (288)
.|-.+.|. .|..-|+.+.+. +. .|..+||+.||.+.|+.+ ..||+|+++.+ +..|+.++-+
T Consensus 514 vfAr~~Pe---~K~~iV~~lq~~----G~---~VamvGDGvNDapAL~~A-----dVGIAm~~gtdvAkeaADivLl~ 576 (755)
T TIGR01647 514 GFAEVFPE---HKYEIVEILQKR----GH---LVGMTGDGVNDAPALKKA-----DVGIAVAGATDAARSAADIVLTE 576 (755)
T ss_pred EEEecCHH---HHHHHHHHHHhc----CC---EEEEEcCCcccHHHHHhC-----CeeEEecCCcHHHHHhCCEEEEc
Confidence 56777887 899988887653 33 899999999999999999 69999998765 4689988753
No 129
>PF12710 HAD: haloacid dehalogenase-like hydrolase; PDB: 3P96_A 3N28_A 3FVV_A 1RKU_A 1RKV_A 1Y8A_A 2FEA_B 3KD3_B.
Probab=95.85 E-value=0.0086 Score=49.16 Aligned_cols=33 Identities=24% Similarity=0.303 Sum_probs=27.9
Q ss_pred CHHHHHHHH---HHhcCCCCCCCceeEEEcCCcccHHHHH
Q 040896 203 DKGRALEYL---LDTFGFNNASDFLPLYIGDDKTDEDAFK 239 (288)
Q Consensus 203 sKg~al~~l---~~~~~~~~~~~~~vv~~GDs~ND~~Ml~ 239 (288)
+|..+++.+ ... +.... .++++|||.||++||+
T Consensus 157 ~K~~~l~~~~~~~~~-~~~~~---~~~~iGDs~~D~~~lr 192 (192)
T PF12710_consen 157 GKAEALKELYIRDEE-DIDPD---RVIAIGDSINDLPMLR 192 (192)
T ss_dssp HHHHHHHHHHHHHHH-THTCC---EEEEEESSGGGHHHHH
T ss_pred cHHHHHHHHHHHhhc-CCCCC---eEEEEECCHHHHHHhC
Confidence 499999999 444 55555 9999999999999986
No 130
>PRK13288 pyrophosphatase PpaX; Provisional
Probab=95.79 E-value=0.038 Score=46.44 Aligned_cols=69 Identities=19% Similarity=0.166 Sum_probs=53.2
Q ss_pred CCCHHHHHHHHHHhcCCCCCCCceeEEEcCCcccHHHHHHHHhcCCce-EEEEecCC--C----CccceEEeCChhHHHH
Q 040896 201 DWDKGRALEYLLDTFGFNNASDFLPLYIGDDKTDEDAFKVIRHMGRGY-PIIVSSVP--R----ETKALYSLRDPDEVMS 273 (288)
Q Consensus 201 ~~sKg~al~~l~~~~~~~~~~~~~vv~~GDs~ND~~Ml~~~~~~~~g~-~v~v~na~--~----~~~A~~~~~~~~~v~~ 273 (288)
+--|...+++++++++++++ ++++|||+.+|+.+-+.+ |. ++.+..+. + +..+++++++..++.+
T Consensus 137 ~Kp~p~~~~~~~~~~~~~~~---~~~~iGDs~~Di~aa~~a-----G~~~i~v~~g~~~~~~l~~~~~~~~i~~~~~l~~ 208 (214)
T PRK13288 137 AKPDPEPVLKALELLGAKPE---EALMVGDNHHDILAGKNA-----GTKTAGVAWTIKGREYLEQYKPDFMLDKMSDLLA 208 (214)
T ss_pred CCCCcHHHHHHHHHcCCCHH---HEEEECCCHHHHHHHHHC-----CCeEEEEcCCCCCHHHHhhcCcCEEECCHHHHHH
Confidence 34678899999999999877 999999999999988888 54 45554432 1 1258889999998888
Q ss_pred HHHH
Q 040896 274 FLRR 277 (288)
Q Consensus 274 ~l~~ 277 (288)
++..
T Consensus 209 ~i~~ 212 (214)
T PRK13288 209 IVGD 212 (214)
T ss_pred HHhh
Confidence 7654
No 131
>TIGR01454 AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthesis related protein. The most closely related enzyme below the noise cutoff is IndB which is involved in the biosynthesis of Indigoidine in Pectobacterium (Erwinia) chrysanthemi, a gamma proteobacter. This enzyme is similarly related to PGP. In this case, too it is unclear what role would be be played by a PGPase activity.
Probab=95.79 E-value=0.019 Score=47.95 Aligned_cols=66 Identities=15% Similarity=0.209 Sum_probs=50.5
Q ss_pred CHHHHHHHHHHhcCCCCCCCceeEEEcCCcccHHHHHHHHhcCCce-EEEEecC--CC----CccceEEeCChhHHHHHH
Q 040896 203 DKGRALEYLLDTFGFNNASDFLPLYIGDDKTDEDAFKVIRHMGRGY-PIIVSSV--PR----ETKALYSLRDPDEVMSFL 275 (288)
Q Consensus 203 sKg~al~~l~~~~~~~~~~~~~vv~~GDs~ND~~Ml~~~~~~~~g~-~v~v~na--~~----~~~A~~~~~~~~~v~~~l 275 (288)
-|...++.+++.++++++ ++++|||+.+|+.+-+.+ |. ++.+..+ .. +..|++++++..++..++
T Consensus 132 P~~~~~~~~~~~~~~~~~---~~l~igD~~~Di~aA~~~-----Gi~~i~~~~g~~~~~~l~~~~~~~~~~~~~~l~~~~ 203 (205)
T TIGR01454 132 PAPDIVREALRLLDVPPE---DAVMVGDAVTDLASARAA-----GTATVAALWGEGDAGELLAARPDFLLRKPQSLLALC 203 (205)
T ss_pred CChHHHHHHHHHcCCChh---heEEEcCCHHHHHHHHHc-----CCeEEEEEecCCChhhhhhcCCCeeeCCHHHHHHHh
Confidence 567889999999999887 999999999999988887 54 3444322 22 246889999998887665
Q ss_pred H
Q 040896 276 R 276 (288)
Q Consensus 276 ~ 276 (288)
+
T Consensus 204 ~ 204 (205)
T TIGR01454 204 R 204 (205)
T ss_pred h
Confidence 3
No 132
>TIGR01449 PGP_bact 2-phosphoglycolate phosphatase, prokaryotic. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolase enzymes (pfam00702).
Probab=95.78 E-value=0.018 Score=48.21 Aligned_cols=64 Identities=14% Similarity=0.193 Sum_probs=48.7
Q ss_pred CHHHHHHHHHHhcCCCCCCCceeEEEcCCcccHHHHHHHHhcCCce-EEEEec--CCC----CccceEEeCChhHHHHH
Q 040896 203 DKGRALEYLLDTFGFNNASDFLPLYIGDDKTDEDAFKVIRHMGRGY-PIIVSS--VPR----ETKALYSLRDPDEVMSF 274 (288)
Q Consensus 203 sKg~al~~l~~~~~~~~~~~~~vv~~GDs~ND~~Ml~~~~~~~~g~-~v~v~n--a~~----~~~A~~~~~~~~~v~~~ 274 (288)
-+...+..++++++++++ ++++|||+.+|+.+.+.+ |+ ++.+.- ... ...|++++++..++..+
T Consensus 142 p~p~~~~~~~~~~~~~~~---~~~~igDs~~d~~aa~~a-----G~~~i~v~~g~~~~~~l~~~~a~~~i~~~~~l~~~ 212 (213)
T TIGR01449 142 PHPDPLLLAAERLGVAPQ---QMVYVGDSRVDIQAARAA-----GCPSVLLTYGYRYGEAIDLLPPDVLYDSLNELPPL 212 (213)
T ss_pred CChHHHHHHHHHcCCChh---HeEEeCCCHHHHHHHHHC-----CCeEEEEccCCCCCcchhhcCCCeEeCCHHHHHhh
Confidence 456789999999999887 999999999999999998 54 444522 211 23688888888887653
No 133
>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]
Probab=95.73 E-value=0.013 Score=51.17 Aligned_cols=49 Identities=18% Similarity=0.136 Sum_probs=37.1
Q ss_pred CcEEEEEecCCccccCcCCCCCCCCCHHHHHHHHHHhhcC-CEEEEcC---CChhhHhh
Q 040896 20 KKIVVFLDYDGTLSPIVEDPDKAFMSDTMRMAVHEVAHFF-PTAIVSG---RCLDKVSR 74 (288)
Q Consensus 20 ~~~li~~DlDGTL~~~~~~~~~~~i~~~~~~aL~~L~~~~-~v~i~TG---R~~~~l~~ 74 (288)
+.+.++||+||||.. ....-|...++|++|++++ +++++|= |++..+.+
T Consensus 7 ~y~~~l~DlDGvl~~------G~~~ipga~e~l~~L~~~g~~~iflTNn~~~s~~~~~~ 59 (269)
T COG0647 7 KYDGFLFDLDGVLYR------GNEAIPGAAEALKRLKAAGKPVIFLTNNSTRSREVVAA 59 (269)
T ss_pred hcCEEEEcCcCceEe------CCccCchHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Confidence 356799999999998 3456678999999999995 8888764 44443443
No 134
>PRK08238 hypothetical protein; Validated
Probab=95.69 E-value=0.025 Score=53.74 Aligned_cols=46 Identities=7% Similarity=-0.150 Sum_probs=35.0
Q ss_pred CCCHHHHHHHHHHhhcC-CEEEEcCCChhhHhhhc---CCCCeEEEccCce
Q 040896 43 FMSDTMRMAVHEVAHFF-PTAIVSGRCLDKVSRFV---QLKNVVYAGSHGM 89 (288)
Q Consensus 43 ~i~~~~~~aL~~L~~~~-~v~i~TGR~~~~l~~~~---~~~~~~~i~~nGa 89 (288)
.+.+...+.|+++++++ +++++|+++...+.+.. ++. ..++|.++.
T Consensus 72 p~~pga~e~L~~lk~~G~~v~LaTas~~~~a~~i~~~lGlF-d~Vigsd~~ 121 (479)
T PRK08238 72 PYNEEVLDYLRAERAAGRKLVLATASDERLAQAVAAHLGLF-DGVFASDGT 121 (479)
T ss_pred CCChhHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHcCCC-CEEEeCCCc
Confidence 35588999999999996 89999999998877653 442 346666654
No 135
>TIGR03333 salvage_mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase. Members of this family are the methionine salvage enzyme MnxX, a member of the HAD-superfamily hydrolases, subfamily IB (see TIGR01488). Members are found in Bacillus subtilis and related species, paired with MtnW (TIGR03332). In most species that recycle methionine from methylthioadenosine, the single protein MtnC replaces the MtnW/MtnX pair. In B. subtilis, mtnX was first known as ykrX.
Probab=95.65 E-value=0.018 Score=48.59 Aligned_cols=66 Identities=20% Similarity=0.098 Sum_probs=45.2
Q ss_pred CCHHHHHHHHHHhcCCCCCCCceeEEEcCCcccHHHHHHHHhcCCceEEEEecCC----CCccceEEeCChhHHHHHHHH
Q 040896 202 WDKGRALEYLLDTFGFNNASDFLPLYIGDDKTDEDAFKVIRHMGRGYPIIVSSVP----RETKALYSLRDPDEVMSFLRR 277 (288)
Q Consensus 202 ~sKg~al~~l~~~~~~~~~~~~~vv~~GDs~ND~~Ml~~~~~~~~g~~v~v~na~----~~~~A~~~~~~~~~v~~~l~~ 277 (288)
..|..+++.+.. ..+ .++++||+.||++|.+.+ ++.++-+.-. ....+.+...+-.+|.++|++
T Consensus 143 ~~K~~~l~~~~~----~~~---~~i~iGDg~~D~~~a~~A-----d~~~ar~~l~~~~~~~~~~~~~~~~f~di~~~l~~ 210 (214)
T TIGR03333 143 CCKPSLIRKLSE----PND---YHIVIGDSVTDVEAAKQS-----DLCFARDYLLNECEELGLNHAPFQDFYDVRKELEN 210 (214)
T ss_pred CCHHHHHHHHhh----cCC---cEEEEeCCHHHHHHHHhC-----CeeEehHHHHHHHHHcCCCccCcCCHHHHHHHHHH
Confidence 458888887653 334 899999999999999988 6766544211 112333334678889888876
Q ss_pred HH
Q 040896 278 LA 279 (288)
Q Consensus 278 ~~ 279 (288)
..
T Consensus 211 ~~ 212 (214)
T TIGR03333 211 VK 212 (214)
T ss_pred Hh
Confidence 54
No 136
>PF03767 Acid_phosphat_B: HAD superfamily, subfamily IIIB (Acid phosphatase); InterPro: IPR005519 This family of class B acid phosphatases also contains a number of vegetative storage proteins (VPS25). The acid phosphatase activity of VPS has been experimentally demonstrated [].; GO: 0003993 acid phosphatase activity; PDB: 3PCT_C 2I34_A 2I33_A 1Z5U_D 1Z5G_A 2AUT_C 1Z88_B 3OCV_A 3OCZ_A 3OCX_A ....
Probab=95.57 E-value=0.0091 Score=51.14 Aligned_cols=53 Identities=19% Similarity=0.044 Sum_probs=39.4
Q ss_pred CCcEEEEEecCCccccCcCC------------C---------CCCCCCHHHHHHHHHHhhcC-CEEEEcCCChhh
Q 040896 19 GKKIVVFLDYDGTLSPIVED------------P---------DKAFMSDTMRMAVHEVAHFF-PTAIVSGRCLDK 71 (288)
Q Consensus 19 ~~~~li~~DlDGTL~~~~~~------------~---------~~~~i~~~~~~aL~~L~~~~-~v~i~TGR~~~~ 71 (288)
.++..++||+|+|+++.... + .....-|.+++.++.+++++ .|+++|||+...
T Consensus 70 ~~~~avv~DIDeTvLsn~~y~~~~~~~~~~~~~~~w~~wv~~~~~~aip~a~~l~~~~~~~G~~V~~iT~R~~~~ 144 (229)
T PF03767_consen 70 DKPPAVVFDIDETVLSNSPYYAYLIFGGESFSPEDWDEWVASGKAPAIPGALELYNYARSRGVKVFFITGRPESQ 144 (229)
T ss_dssp TSEEEEEEESBTTTEEHHHHHHHHHHHTHHH-CCHHHHHHHCTGGEEETTHHHHHHHHHHTTEEEEEEEEEETTC
T ss_pred CCCcEEEEECCcccccCHHHHHHHhhccCCCChHHHHHHHhcccCcccHHHHHHHHHHHHCCCeEEEEecCCchh
Confidence 57899999999999862100 0 12233456889999999996 999999999873
No 137
>TIGR01545 YfhB_g-proteo haloacid dehalogenase superfamily, subfamily IF hydrolase, YfhB. The gene name comes from the E. coli gene. There is currently no information regarding the function of this gene.
Probab=95.56 E-value=0.014 Score=49.37 Aligned_cols=43 Identities=23% Similarity=0.095 Sum_probs=30.7
Q ss_pred CCCHHHHHHHHHHhcCCCCCCCceeEEEcCCcccHHHHHHHHhcCCceEEEEec
Q 040896 201 DWDKGRALEYLLDTFGFNNASDFLPLYIGDDKTDEDAFKVIRHMGRGYPIIVSS 254 (288)
Q Consensus 201 ~~sKg~al~~l~~~~~~~~~~~~~vv~~GDs~ND~~Ml~~~~~~~~g~~v~v~n 254 (288)
|-.|-..++..+ +.+.+ ..++.|||.||+|||+.+ +++++|..
T Consensus 160 g~~Kv~rl~~~~---~~~~~---~~~aYsDS~~D~pmL~~a-----~~~~~Vnp 202 (210)
T TIGR01545 160 GHEKVAQLEQKI---GSPLK---LYSGYSDSKQDNPLLAFC-----EHRWRVSK 202 (210)
T ss_pred ChHHHHHHHHHh---CCChh---heEEecCCcccHHHHHhC-----CCcEEECc
Confidence 445555555444 43333 778999999999999999 67887753
No 138
>PRK11590 hypothetical protein; Provisional
Probab=95.56 E-value=0.022 Score=47.98 Aligned_cols=43 Identities=21% Similarity=0.083 Sum_probs=30.8
Q ss_pred CCCHHHHHHHHHHhcCCCCCCCceeEEEcCCcccHHHHHHHHhcCCceEEEEec
Q 040896 201 DWDKGRALEYLLDTFGFNNASDFLPLYIGDDKTDEDAFKVIRHMGRGYPIIVSS 254 (288)
Q Consensus 201 ~~sKg~al~~l~~~~~~~~~~~~~vv~~GDs~ND~~Ml~~~~~~~~g~~v~v~n 254 (288)
|-.|-..|+. .++.+.. ..++.|||.||+|||+.+ +.+++|..
T Consensus 161 g~~K~~~l~~---~~~~~~~---~~~aY~Ds~~D~pmL~~a-----~~~~~vnp 203 (211)
T PRK11590 161 GHEKVAQLER---KIGTPLR---LYSGYSDSKQDNPLLYFC-----QHRWRVTP 203 (211)
T ss_pred ChHHHHHHHH---HhCCCcc---eEEEecCCcccHHHHHhC-----CCCEEECc
Confidence 4455544444 4454444 778999999999999999 67887753
No 139
>PRK13582 thrH phosphoserine phosphatase; Provisional
Probab=95.55 E-value=0.019 Score=47.79 Aligned_cols=31 Identities=10% Similarity=0.047 Sum_probs=24.7
Q ss_pred HHHHHHHHHHhhcCCEEEEcCCChhhHhhhc
Q 040896 46 DTMRMAVHEVAHFFPTAIVSGRCLDKVSRFV 76 (288)
Q Consensus 46 ~~~~~aL~~L~~~~~v~i~TGR~~~~l~~~~ 76 (288)
|.+.+.|..|++..+++|+|+.....+..++
T Consensus 71 pg~~e~L~~L~~~~~~~IvS~~~~~~~~~~l 101 (205)
T PRK13582 71 PGAVEFLDWLRERFQVVILSDTFYEFAGPLM 101 (205)
T ss_pred CCHHHHHHHHHhcCCEEEEeCCcHHHHHHHH
Confidence 4567788888776788999999998877764
No 140
>COG0560 SerB Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=95.55 E-value=0.017 Score=48.79 Aligned_cols=34 Identities=15% Similarity=-0.000 Sum_probs=29.4
Q ss_pred CCCCHHHHHHHHHHhhcC-CEEEEcCCChhhHhhh
Q 040896 42 AFMSDTMRMAVHEVAHFF-PTAIVSGRCLDKVSRF 75 (288)
Q Consensus 42 ~~i~~~~~~aL~~L~~~~-~v~i~TGR~~~~l~~~ 75 (288)
..+.|.+.+.++.+++.+ .++|+||-+-..+.++
T Consensus 76 ~~l~~ga~elv~~lk~~G~~v~iiSgg~~~lv~~i 110 (212)
T COG0560 76 LRLTPGAEELVAALKAAGAKVVIISGGFTFLVEPI 110 (212)
T ss_pred CcCCccHHHHHHHHHHCCCEEEEEcCChHHHHHHH
Confidence 577888999999999996 8999999999777665
No 141
>TIGR01652 ATPase-Plipid phospholipid-translocating P-type ATPase, flippase. This model describes the P-type ATPase responsible for transporting phospholipids from one leaflet of bilayer membranes to the other. These ATPases are found only in eukaryotes.
Probab=95.50 E-value=0.01 Score=61.90 Aligned_cols=70 Identities=14% Similarity=0.193 Sum_probs=51.2
Q ss_pred eEEEEeCCCCCCHHHHHHHHHHhcCCCCCCCceeEEEcCCcccHHHHHHHHhcCCceEEEEecCC---CCccceEEeCCh
Q 040896 192 KVMEIRPCIDWDKGRALEYLLDTFGFNNASDFLPLYIGDDKTDEDAFKVIRHMGRGYPIIVSSVP---RETKALYSLRDP 268 (288)
Q Consensus 192 ~~ieI~~~~~~sKg~al~~l~~~~~~~~~~~~~vv~~GDs~ND~~Ml~~~~~~~~g~~v~v~na~---~~~~A~~~~~~~ 268 (288)
.+-.++|. .|+.-|+.+.+..| . .|.++||+.||.+||+.+ ..||.+.+.. ....|++++.+-
T Consensus 747 V~aR~sP~---qK~~IV~~lk~~~~---~---~vl~iGDG~ND~~mlk~A-----dVGIgi~g~eg~qA~~aaD~~i~~F 812 (1057)
T TIGR01652 747 ICCRVSPS---QKADVVRLVKKSTG---K---TTLAIGDGANDVSMIQEA-----DVGVGISGKEGMQAVMASDFAIGQF 812 (1057)
T ss_pred EEeCCCHH---HHHHHHHHHHhcCC---C---eEEEEeCCCccHHHHhhc-----CeeeEecChHHHHHHHhhhhhhhhH
Confidence 45566666 89999988877643 3 899999999999999999 4788765443 234788888764
Q ss_pred hHHHHHH
Q 040896 269 DEVMSFL 275 (288)
Q Consensus 269 ~~v~~~l 275 (288)
..+.+.|
T Consensus 813 ~~L~~ll 819 (1057)
T TIGR01652 813 RFLTKLL 819 (1057)
T ss_pred HHHHHHH
Confidence 4444443
No 142
>TIGR02137 HSK-PSP phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein. This enzyme is a member of the haloacid dehalogenase (HAD) superfamily, specifically part of subfamily IB by virtue of the presence of an alpha helical domain in between motifs I and II of the HAD domain . The closest homologs to this family are monofunctional phosphoserine phosphatases (TIGR00338).
Probab=95.48 E-value=0.018 Score=48.40 Aligned_cols=34 Identities=12% Similarity=0.003 Sum_probs=28.1
Q ss_pred CCCHHHHHHHHHHhhcCCEEEEcCCChhhHhhhc
Q 040896 43 FMSDTMRMAVHEVAHFFPTAIVSGRCLDKVSRFV 76 (288)
Q Consensus 43 ~i~~~~~~aL~~L~~~~~v~i~TGR~~~~l~~~~ 76 (288)
.+.|...+.|+.|++.++++|+||.....+.+++
T Consensus 68 ~l~pga~ell~~lk~~~~~~IVS~~~~~~~~~il 101 (203)
T TIGR02137 68 KPLEGAVEFVDWLRERFQVVILSDTFYEFSQPLM 101 (203)
T ss_pred CCCccHHHHHHHHHhCCeEEEEeCChHHHHHHHH
Confidence 5677788889888887799999999998777764
No 143
>COG0474 MgtA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=95.33 E-value=0.018 Score=59.15 Aligned_cols=61 Identities=25% Similarity=0.275 Sum_probs=49.3
Q ss_pred eEEEEeCCCCCCHHHHHHHHHHhcCCCCCCCceeEEEcCCcccHHHHHHHHhcCCceEEEEec-CCC--CccceEEeCC
Q 040896 192 KVMEIRPCIDWDKGRALEYLLDTFGFNNASDFLPLYIGDDKTDEDAFKVIRHMGRGYPIIVSS-VPR--ETKALYSLRD 267 (288)
Q Consensus 192 ~~ieI~~~~~~sKg~al~~l~~~~~~~~~~~~~vv~~GDs~ND~~Ml~~~~~~~~g~~v~v~n-a~~--~~~A~~~~~~ 267 (288)
.|-.+.|. .|..-|+.+.++ | . .|.+.||+.||.+||+.| ..||+|+. +.+ +.+|+.++.+
T Consensus 618 VfARvsP~---qK~~IV~~lq~~-g---~---vVamtGDGvNDapALk~A-----DVGIamg~~Gtdaak~Aadivl~d 681 (917)
T COG0474 618 VFARVSPE---QKARIVEALQKS-G---H---VVAMTGDGVNDAPALKAA-----DVGIAMGGEGTDAAKEAADIVLLD 681 (917)
T ss_pred EEEEcCHH---HHHHHHHHHHhC-C---C---EEEEeCCCchhHHHHHhc-----CccEEecccHHHHHHhhcceEeec
Confidence 67778888 899988888876 4 3 899999999999999999 59998885 443 4578877654
No 144
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=95.33 E-value=0.013 Score=48.78 Aligned_cols=32 Identities=16% Similarity=0.234 Sum_probs=28.2
Q ss_pred HHHHHHHhcCCCCCCCceeEEEcCCcccHHHHHHH
Q 040896 207 ALEYLLDTFGFNNASDFLPLYIGDDKTDEDAFKVI 241 (288)
Q Consensus 207 al~~l~~~~~~~~~~~~~vv~~GDs~ND~~Ml~~~ 241 (288)
....+++.++.++. .|+++||+.||++|++.+
T Consensus 183 ~~~~~i~~l~~~~~---~v~~vGDg~nD~~al~~A 214 (215)
T PF00702_consen 183 IFLRIIKELQVKPG---EVAMVGDGVNDAPALKAA 214 (215)
T ss_dssp HHHHHHHHHTCTGG---GEEEEESSGGHHHHHHHS
T ss_pred hHHHHHHHHhcCCC---EEEEEccCHHHHHHHHhC
Confidence 56778888888777 999999999999999987
No 145
>TIGR01488 HAD-SF-IB Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like. Subfamily IA includes the enzyme phosphoserine phosphatase (TIGR00338) as well as three hypothetical equivalogs. Many members of these hypothetical equivalogs have been annotated as PSPase-like or PSPase-family proteins. In particular, the hypothetical equivalog which appears to be most closely related to PSPase contains only Archaea (while TIGR00338 contains only eukaryotes and bacteria) of which some are annotated as PSPases. Although this is a reasonable conjecture, none of these sequences has sufficient evidence for this assignment. If such should be found, this model should be retired while the PSPase model should be broadened to include these sequences.
Probab=95.31 E-value=0.027 Score=45.60 Aligned_cols=32 Identities=22% Similarity=-0.016 Sum_probs=23.9
Q ss_pred CHHHHHHHHHHhhcC-CEEEEcCCChhhHhhhc
Q 040896 45 SDTMRMAVHEVAHFF-PTAIVSGRCLDKVSRFV 76 (288)
Q Consensus 45 ~~~~~~aL~~L~~~~-~v~i~TGR~~~~l~~~~ 76 (288)
.+.+.+.|+.+++.+ .++|+||.....+.+.+
T Consensus 75 ~~g~~~~l~~l~~~g~~~~ivS~~~~~~i~~~~ 107 (177)
T TIGR01488 75 RPGARELISWLKERGIDTVIVSGGFDFFVEPVA 107 (177)
T ss_pred CcCHHHHHHHHHHCCCEEEEECCCcHHHHHHHH
Confidence 456777777777775 78899998887777654
No 146
>PRK05446 imidazole glycerol-phosphate dehydratase/histidinol phosphatase; Provisional
Probab=95.23 E-value=0.024 Score=51.61 Aligned_cols=48 Identities=21% Similarity=0.241 Sum_probs=38.5
Q ss_pred CcEEEEEecCCccccCc------CCCCCCCCCHHHHHHHHHHhhcC-CEEEEcCC
Q 040896 20 KKIVVFLDYDGTLSPIV------EDPDKAFMSDTMRMAVHEVAHFF-PTAIVSGR 67 (288)
Q Consensus 20 ~~~li~~DlDGTL~~~~------~~~~~~~i~~~~~~aL~~L~~~~-~v~i~TGR 67 (288)
+++++|+|.||||.... ..+.+..+.|...++|.+|++.+ +++|+|..
T Consensus 1 ~~k~l~lDrDgtl~~~~~~~y~~~~~~~~~l~pGV~e~L~~Lk~~G~kL~IvTNq 55 (354)
T PRK05446 1 MQKILFIDRDGTLIEEPPTDFQVDSLDKLAFEPGVIPALLKLQKAGYKLVMVTNQ 55 (354)
T ss_pred CCcEEEEeCCCCccCCCCccccccCcccceECcCHHHHHHHHHhCCCeEEEEECC
Confidence 36899999999999842 12234577888999999999885 89999985
No 147
>TIGR02251 HIF-SF_euk Dullard-like phosphatase domain. This domain is related to domains found in FCP1-like phosphatases (TIGR02250), and together both are detected by the Pfam model pfam03031.
Probab=95.13 E-value=0.043 Score=44.32 Aligned_cols=56 Identities=18% Similarity=0.210 Sum_probs=43.0
Q ss_pred cEEEEEecCCccccCcCCCCC-------------------CCCCHHHHHHHHHHhhcCCEEEEcCCChhhHhhhc
Q 040896 21 KIVVFLDYDGTLSPIVEDPDK-------------------AFMSDTMRMAVHEVAHFFPTAIVSGRCLDKVSRFV 76 (288)
Q Consensus 21 ~~li~~DlDGTL~~~~~~~~~-------------------~~i~~~~~~aL~~L~~~~~v~i~TGR~~~~l~~~~ 76 (288)
++.+++|||+||+.....+.. -...|.+.+.|.+|.+...++|.|..+..-+..++
T Consensus 1 k~~lvlDLDeTLi~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~RPgl~eFL~~l~~~yei~I~Ts~~~~yA~~il 75 (162)
T TIGR02251 1 KKTLVLDLDETLVHSTFKMPKVDADFKVPVLIDGKIIPVYVFKRPHVDEFLERVSKWYELVIFTASLEEYADPVL 75 (162)
T ss_pred CcEEEEcCCCCcCCCCCCCCCCCCceEEEEEecCcEEEEEEEECCCHHHHHHHHHhcCEEEEEcCCcHHHHHHHH
Confidence 468999999999975433311 02567889999999887789999999888777765
No 148
>PF13242 Hydrolase_like: HAD-hyrolase-like; PDB: 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A 2HX1_D 2X4D_A 3HLT_C 3L1U_B ....
Probab=95.13 E-value=0.067 Score=37.04 Aligned_cols=58 Identities=29% Similarity=0.310 Sum_probs=43.5
Q ss_pred HHHHHHHHhcCCCCCCCceeEEEcCC-cccHHHHHHHHhcCCceEEEEecCC--C------CccceEEeCChhH
Q 040896 206 RALEYLLDTFGFNNASDFLPLYIGDD-KTDEDAFKVIRHMGRGYPIIVSSVP--R------ETKALYSLRDPDE 270 (288)
Q Consensus 206 ~al~~l~~~~~~~~~~~~~vv~~GDs-~ND~~Ml~~~~~~~~g~~v~v~na~--~------~~~A~~~~~~~~~ 270 (288)
..++..++.++++++ +++++||+ ..|+.+=+.+. -.++.|..+. . ...++|++++..+
T Consensus 8 ~~~~~a~~~~~~~~~---~~~~VGD~~~~Di~~a~~~G----~~~ilV~tG~~~~~~~~~~~~~pd~vv~~l~e 74 (75)
T PF13242_consen 8 GMLEQALKRLGVDPS---RCVMVGDSLETDIEAAKAAG----IDTILVLTGVYSPEDLEKAEHKPDYVVDDLKE 74 (75)
T ss_dssp HHHHHHHHHHTSGGG---GEEEEESSTTTHHHHHHHTT----SEEEEESSSSSCCCGHHHSSSTTSEEESSGGG
T ss_pred HHHHHHHHHcCCCHH---HEEEEcCCcHhHHHHHHHcC----CcEEEECCCCCCHHHHhccCCCCCEEECCHHh
Confidence 457778888898877 99999999 99999888872 3567776653 2 1368888887543
No 149
>PF12689 Acid_PPase: Acid Phosphatase; InterPro: IPR010036 This entry represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterised as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues [, ].; GO: 0016791 phosphatase activity; PDB: 1U7P_A 1U7O_A 2WM8_A.
Probab=95.10 E-value=0.022 Score=46.28 Aligned_cols=56 Identities=20% Similarity=0.131 Sum_probs=29.7
Q ss_pred cEEEEEecCCccccCcCCC--------------------CCCCCCHHHHHHHHHHhhcC-CEEEEcCCCh-hhHhhhc
Q 040896 21 KIVVFLDYDGTLSPIVEDP--------------------DKAFMSDTMRMAVHEVAHFF-PTAIVSGRCL-DKVSRFV 76 (288)
Q Consensus 21 ~~li~~DlDGTL~~~~~~~--------------------~~~~i~~~~~~aL~~L~~~~-~v~i~TGR~~-~~l~~~~ 76 (288)
.+|++||||+||.++.-.. ..-.+-+.+..+|++|++.+ .+++||--+. ..+++.+
T Consensus 3 PklvvFDLD~TlW~~~~~~~~~~Pf~~~~~~~~v~D~~g~~v~lypdv~~iL~~L~~~gv~lavASRt~~P~~A~~~L 80 (169)
T PF12689_consen 3 PKLVVFDLDYTLWPPWMDTHVGPPFKKISNGNVVVDSRGEEVSLYPDVPEILQELKERGVKLAVASRTDEPDWARELL 80 (169)
T ss_dssp -SEEEE-STTTSSSS-TTTSS-S-EEE-TTS--EEETT--EE---TTHHHHHHHHHHCT--EEEEE--S-HHHHHHHH
T ss_pred CcEEEEcCcCCCCchhHhhccCCCceecCCCCEEEeCCCCEEEeCcCHHHHHHHHHHCCCEEEEEECCCChHHHHHHH
Confidence 5899999999999842110 01134566777788877774 7777774333 3344443
No 150
>TIGR02250 FCP1_euk FCP1-like phosphatase, phosphatase domain. This domain is related to domains found in the human NLI interacting factor-like phosphatases, and together both are detected by the Pfam model pfam03031.
Probab=95.06 E-value=0.054 Score=43.46 Aligned_cols=59 Identities=17% Similarity=0.237 Sum_probs=44.3
Q ss_pred cCCcEEEEEecCCccccCcCCCCC------------------------------CCCCHHHHHHHHHHhhcCCEEEEcCC
Q 040896 18 KGKKIVVFLDYDGTLSPIVEDPDK------------------------------AFMSDTMRMAVHEVAHFFPTAIVSGR 67 (288)
Q Consensus 18 ~~~~~li~~DlDGTL~~~~~~~~~------------------------------~~i~~~~~~aL~~L~~~~~v~i~TGR 67 (288)
..+++.+++|||.||++....+.. -.+-|.+.+.|++|.+...++|+|..
T Consensus 3 ~~~kl~LVLDLDeTLihs~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~v~~rPgv~efL~~l~~~yel~I~T~~ 82 (156)
T TIGR02250 3 REKKLHLVLDLDQTLIHTTKDPTLSEWEKYDIEEPNSETRRDLRKFNLGTMWYLTKLRPFLHEFLKEASKLYEMHVYTMG 82 (156)
T ss_pred cCCceEEEEeCCCCcccccccCccchhhhcccccCCccccccceEEEcCCeEEEEEECCCHHHHHHHHHhhcEEEEEeCC
Confidence 457889999999999984322100 11356889999999977789999999
Q ss_pred ChhhHhhhc
Q 040896 68 CLDKVSRFV 76 (288)
Q Consensus 68 ~~~~l~~~~ 76 (288)
+..-+...+
T Consensus 83 ~~~yA~~vl 91 (156)
T TIGR02250 83 TRAYAQAIA 91 (156)
T ss_pred cHHHHHHHH
Confidence 998777765
No 151
>PRK10826 2-deoxyglucose-6-phosphatase; Provisional
Probab=95.01 E-value=0.095 Score=44.29 Aligned_cols=63 Identities=14% Similarity=0.018 Sum_probs=47.4
Q ss_pred CCHHHHHHHHHHhcCCCCCCCceeEEEcCCcccHHHHHHHHhcCCce-EEEEecCCC-----CccceEEeCChhHHH
Q 040896 202 WDKGRALEYLLDTFGFNNASDFLPLYIGDDKTDEDAFKVIRHMGRGY-PIIVSSVPR-----ETKALYSLRDPDEVM 272 (288)
Q Consensus 202 ~sKg~al~~l~~~~~~~~~~~~~vv~~GDs~ND~~Ml~~~~~~~~g~-~v~v~na~~-----~~~A~~~~~~~~~v~ 272 (288)
-.+...++.+++.+|++++ ++++|||+.+|+++-+.+ |. ++.+..... ...|++++.+..++.
T Consensus 148 Kp~~~~~~~~~~~~~~~~~---~~~~igDs~~Di~aA~~a-----G~~~i~v~~~~~~~~~~~~~~~~~~~~~~dl~ 216 (222)
T PRK10826 148 KPHPEVYLNCAAKLGVDPL---TCVALEDSFNGMIAAKAA-----RMRSIVVPAPEQQNDPRWALADVKLESLTELT 216 (222)
T ss_pred CCCHHHHHHHHHHcCCCHH---HeEEEcCChhhHHHHHHc-----CCEEEEecCCccCchhhhhhhheeccCHHHHh
Confidence 3566799999999999887 999999999999999888 54 455544321 135777777776653
No 152
>TIGR01489 DKMTPPase-SF 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. Note that SP|P53981 from S. cerevisiae, a member of this family, is annotated as a "probable membrane protein" due to a predicted transmembrane helix. The region in question contains the second of the three conserved HAD superfamily catalytic motifs and thus, considering the fold of the HAD catalytic domain, is unlikely to be a transmembrane region in fact.
Probab=95.01 E-value=0.049 Score=44.41 Aligned_cols=37 Identities=32% Similarity=0.466 Sum_probs=31.5
Q ss_pred CCCCCCHHHHHHHHHHhcCCCCCCCceeEEEcCCcccHHHHHHH
Q 040896 198 PCIDWDKGRALEYLLDTFGFNNASDFLPLYIGDDKTDEDAFKVI 241 (288)
Q Consensus 198 ~~~~~sKg~al~~l~~~~~~~~~~~~~vv~~GDs~ND~~Ml~~~ 241 (288)
+. |..|+..++.+++.+ ++ +++++||+.||+++.+.+
T Consensus 145 ~~-g~~K~~~~~~~~~~~---~~---~~i~iGD~~~D~~aa~~~ 181 (188)
T TIGR01489 145 PC-GCCKGKVIHKLSEPK---YQ---HIIYIGDGVTDVCPAKLS 181 (188)
T ss_pred CC-CCCHHHHHHHHHhhc---Cc---eEEEECCCcchhchHhcC
Confidence 55 788999999998875 34 999999999999988776
No 153
>PRK13222 phosphoglycolate phosphatase; Provisional
Probab=94.93 E-value=0.048 Score=45.97 Aligned_cols=15 Identities=40% Similarity=0.445 Sum_probs=13.3
Q ss_pred CcEEEEEecCCcccc
Q 040896 20 KKIVVFLDYDGTLSP 34 (288)
Q Consensus 20 ~~~li~~DlDGTL~~ 34 (288)
..++++||+||||++
T Consensus 5 ~~~~iiFD~DGTL~d 19 (226)
T PRK13222 5 DIRAVAFDLDGTLVD 19 (226)
T ss_pred cCcEEEEcCCccccc
Confidence 467999999999996
No 154
>PF05152 DUF705: Protein of unknown function (DUF705); InterPro: IPR007827 This family contains uncharacterised baculoviral proteins.
Probab=94.84 E-value=0.12 Score=45.16 Aligned_cols=70 Identities=14% Similarity=0.052 Sum_probs=46.2
Q ss_pred CcEEEEEecCCccccCcCCCCCCCC-CHHHHHHHHHHhhcC-CEEEEcCCChhhHhhh---cCCCC-eEEEccCceeEe
Q 040896 20 KKIVVFLDYDGTLSPIVEDPDKAFM-SDTMRMAVHEVAHFF-PTAIVSGRCLDKVSRF---VQLKN-VVYAGSHGMDIS 92 (288)
Q Consensus 20 ~~~li~~DlDGTL~~~~~~~~~~~i-~~~~~~aL~~L~~~~-~v~i~TGR~~~~l~~~---~~~~~-~~~i~~nGa~i~ 92 (288)
...+|+||||.||.... ...+| .+...+.|.+|++.+ .+++=|-...+.+..- +++++ +.+|-++|....
T Consensus 121 ~phVIVfDlD~TLItd~---~~v~Ir~~~v~~sL~~Lk~~g~vLvLWSyG~~eHV~~sl~~~~L~~~Fd~ii~~G~~~~ 196 (297)
T PF05152_consen 121 PPHVIVFDLDSTLITDE---GDVRIRDPAVYDSLRELKEQGCVLVLWSYGNREHVRHSLKELKLEGYFDIIICGGNKAG 196 (297)
T ss_pred CCcEEEEECCCcccccC---CccccCChHHHHHHHHHHHcCCEEEEecCCCHHHHHHHHHHhCCccccEEEEeCCccCC
Confidence 56899999999999843 22233 568899999999997 5566565566555553 34443 334545555443
No 155
>TIGR01657 P-ATPase-V P-type ATPase of unknown pump specificity (type V). These P-type ATPases form a distinct clade but the substrate of their pumping activity has yet to be determined. This clade has been designated type V in.
Probab=94.83 E-value=0.047 Score=57.06 Aligned_cols=70 Identities=20% Similarity=0.172 Sum_probs=54.3
Q ss_pred eEEEEeCCCCCCHHHHHHHHHHhcCCCCCCCceeEEEcCCcccHHHHHHHHhcCCceEEEEecCCCCccceEEeC--Chh
Q 040896 192 KVMEIRPCIDWDKGRALEYLLDTFGFNNASDFLPLYIGDDKTDEDAFKVIRHMGRGYPIIVSSVPRETKALYSLR--DPD 269 (288)
Q Consensus 192 ~~ieI~~~~~~sKg~al~~l~~~~~~~~~~~~~vv~~GDs~ND~~Ml~~~~~~~~g~~v~v~na~~~~~A~~~~~--~~~ 269 (288)
.|--+.|. .|..-|+.+.+. | . .|...||+.||.++|+.| ..||+|+++....+|+++.. +..
T Consensus 781 VfAR~sP~---qK~~iV~~lq~~-g---~---~V~m~GDG~ND~~ALK~A-----dVGIam~~~das~AA~f~l~~~~~~ 845 (1054)
T TIGR01657 781 VFARMAPD---QKETLVELLQKL-D---Y---TVGMCGDGANDCGALKQA-----DVGISLSEAEASVAAPFTSKLASIS 845 (1054)
T ss_pred EEEecCHH---HHHHHHHHHHhC-C---C---eEEEEeCChHHHHHHHhc-----CcceeeccccceeecccccCCCcHH
Confidence 57778888 999999988763 3 3 889999999999999999 58999998755567888764 344
Q ss_pred HHHHHHH
Q 040896 270 EVMSFLR 276 (288)
Q Consensus 270 ~v~~~l~ 276 (288)
.|...++
T Consensus 846 ~I~~~I~ 852 (1054)
T TIGR01657 846 CVPNVIR 852 (1054)
T ss_pred HHHHHHH
Confidence 5555543
No 156
>PLN03190 aminophospholipid translocase; Provisional
Probab=94.78 E-value=0.044 Score=57.60 Aligned_cols=67 Identities=12% Similarity=0.203 Sum_probs=44.6
Q ss_pred EEEeCCCCCCHHHHHHHHHHhcCCCCCCCceeEEEcCCcccHHHHHHHHhcCCceEEEEecCC--C-CccceEEeCChhH
Q 040896 194 MEIRPCIDWDKGRALEYLLDTFGFNNASDFLPLYIGDDKTDEDAFKVIRHMGRGYPIIVSSVP--R-ETKALYSLRDPDE 270 (288)
Q Consensus 194 ieI~~~~~~sKg~al~~l~~~~~~~~~~~~~vv~~GDs~ND~~Ml~~~~~~~~g~~v~v~na~--~-~~~A~~~~~~~~~ 270 (288)
.-++|. .|+.-|+.+.+..+ . .|+++||+.||.+|++.| ..||.+.... + ...|||.+..-.-
T Consensus 852 cR~sP~---QKa~IV~~vk~~~~---~---vtlaIGDGaNDv~mIq~A-----dVGIGIsG~EG~qA~~aSDfaI~~Fr~ 917 (1178)
T PLN03190 852 CRVAPL---QKAGIVALVKNRTS---D---MTLAIGDGANDVSMIQMA-----DVGVGISGQEGRQAVMASDFAMGQFRF 917 (1178)
T ss_pred ecCCHH---HHHHHHHHHHhcCC---c---EEEEECCCcchHHHHHhc-----CeeeeecCchhHHHHHhhccchhhhHH
Confidence 445555 78777776665432 2 789999999999999999 4777554332 2 2478887765444
Q ss_pred HHHH
Q 040896 271 VMSF 274 (288)
Q Consensus 271 v~~~ 274 (288)
+.++
T Consensus 918 L~rL 921 (1178)
T PLN03190 918 LVPL 921 (1178)
T ss_pred HHHH
Confidence 4443
No 157
>PF06888 Put_Phosphatase: Putative Phosphatase; InterPro: IPR016965 This group represents phosphatases related to PHOSPHO1 and PHOSPHO2 []. It includes plant phosphatases with homology to the haloacid dehalogenase (HAD) superfamily [, ]. PHOSPHO1 is a phosphoethanolamine/phosphocholine phosphatase [], while PHOSPHO2 has high activity toward pyridoxal 5'-phosphate (PLP), and it is active at much lower level toward pyrophosphate, phosphoethanolamine (PEA)and phosphocholine (PCho) []. ; GO: 0016791 phosphatase activity
Probab=94.65 E-value=0.077 Score=45.48 Aligned_cols=79 Identities=25% Similarity=0.271 Sum_probs=51.3
Q ss_pred EEEeCCCCCCHHHHHHHHHHhc---CCCCCCCceeEEEcCCcccHHHHHHHHhcCCceEEEEec-------C-CC-Cccc
Q 040896 194 MEIRPCIDWDKGRALEYLLDTF---GFNNASDFLPLYIGDDKTDEDAFKVIRHMGRGYPIIVSS-------V-PR-ETKA 261 (288)
Q Consensus 194 ieI~~~~~~sKg~al~~l~~~~---~~~~~~~~~vv~~GDs~ND~~Ml~~~~~~~~g~~v~v~n-------a-~~-~~~A 261 (288)
..-.|+ +.-||..++.+++.. |.+.+ +|+++||+.||.-....++.. .+.++=.+ + .+ ...|
T Consensus 142 C~~C~~-NmCK~~il~~~~~~~~~~g~~~~---rviYiGDG~nD~Cp~~~L~~~--D~v~~R~~~~l~~~i~~~~~~~~a 215 (234)
T PF06888_consen 142 CSLCPP-NMCKGKILERLLQEQAQRGVPYD---RVIYIGDGRNDFCPALRLRPR--DVVFPRKGYPLHKLIQKNPGEVKA 215 (234)
T ss_pred CCcCCC-ccchHHHHHHHHHHHhhcCCCcc---eEEEECCCCCCcCcccccCCC--CEEecCCCChHHHHHhcCCCccee
Confidence 345577 889999999999884 55444 999999999998765544321 23322211 0 11 2356
Q ss_pred eEEe-CChhHHHHHHHHH
Q 040896 262 LYSL-RDPDEVMSFLRRL 278 (288)
Q Consensus 262 ~~~~-~~~~~v~~~l~~~ 278 (288)
..+. ++..++.+.|+++
T Consensus 216 ~v~~W~~g~~i~~~l~~~ 233 (234)
T PF06888_consen 216 EVVPWSSGEEILEILLQL 233 (234)
T ss_pred EEEecCCHHHHHHHHHhh
Confidence 5443 4778888888775
No 158
>TIGR01680 Veg_Stor_Prot vegetative storage protein. The proteins represented by this model are close relatives of the plant acid phosphatases (TIGR01675), are limited to members of the Phaseoleae including Glycine max (soybean) and Phaseolus vulgaris (kidney bean). These proteins are highly expressed in the leaves of repeatedly depodded plants. VSP differs most strinkingly from the acid phosphatases in the lack of the conserved nucleophilic aspartate residue in the N-terminus, thus, they should be inactive as phosphatases. This issue was confused by the publication in 1992 of an article claiming activity for the Glycine max VSP. In 1994 this assertion was refuted by the separation of the activity from the VSP.
Probab=94.64 E-value=0.053 Score=47.28 Aligned_cols=52 Identities=21% Similarity=0.201 Sum_probs=38.1
Q ss_pred CcEEEEEecCCccccCc----------CC------------CCCCCCCHHHHHHHHHHhhcC-CEEEEcCCChhh
Q 040896 20 KKIVVFLDYDGTLSPIV----------ED------------PDKAFMSDTMRMAVHEVAHFF-PTAIVSGRCLDK 71 (288)
Q Consensus 20 ~~~li~~DlDGTL~~~~----------~~------------~~~~~i~~~~~~aL~~L~~~~-~v~i~TGR~~~~ 71 (288)
.+-++++|+|+|+++.. +. ......-|.+++.++.+++.+ .|+++|||+-..
T Consensus 100 ~~dA~V~DIDET~LsN~pY~~~~~~g~e~~~~~~w~~~Wv~~~~ApAlp~al~ly~~l~~~G~kIf~VSgR~e~~ 174 (275)
T TIGR01680 100 EKDTFLFNIDGTALSNIPYYKKHGYGSEKFDSELYDEEFVNKGEAPALPETLKNYNKLVSLGFKIIFLSGRLKDK 174 (275)
T ss_pred CCCEEEEECccccccCHHHHHHhcCCCCcCChhhhhHHHHhcccCCCChHHHHHHHHHHHCCCEEEEEeCCchhH
Confidence 56899999999999410 00 013344567889999999886 899999998643
No 159
>PLN02940 riboflavin kinase
Probab=94.44 E-value=0.074 Score=49.14 Aligned_cols=30 Identities=10% Similarity=0.049 Sum_probs=21.7
Q ss_pred HHHHHHHHHHhhcC-CEEEEcCCChhhHhhh
Q 040896 46 DTMRMAVHEVAHFF-PTAIVSGRCLDKVSRF 75 (288)
Q Consensus 46 ~~~~~aL~~L~~~~-~v~i~TGR~~~~l~~~ 75 (288)
+.+.+.|+.|++.+ +++|+|+.+...+...
T Consensus 96 pGv~elL~~Lk~~g~~l~IvTn~~~~~~~~~ 126 (382)
T PLN02940 96 PGANRLIKHLKSHGVPMALASNSPRANIEAK 126 (382)
T ss_pred cCHHHHHHHHHHCCCcEEEEeCCcHHHHHHH
Confidence 44566777887774 8899999888766544
No 160
>TIGR01489 DKMTPPase-SF 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. Note that SP|P53981 from S. cerevisiae, a member of this family, is annotated as a "probable membrane protein" due to a predicted transmembrane helix. The region in question contains the second of the three conserved HAD superfamily catalytic motifs and thus, considering the fold of the HAD catalytic domain, is unlikely to be a transmembrane region in fact.
Probab=94.37 E-value=0.051 Score=44.34 Aligned_cols=15 Identities=47% Similarity=0.753 Sum_probs=12.9
Q ss_pred cEEEEEecCCccccC
Q 040896 21 KIVVFLDYDGTLSPI 35 (288)
Q Consensus 21 ~~li~~DlDGTL~~~ 35 (288)
+.+++||+||||++.
T Consensus 1 ~~~iiFD~dgTL~~~ 15 (188)
T TIGR01489 1 KVVVVSDFDGTITLN 15 (188)
T ss_pred CeEEEEeCCCcccCC
Confidence 358999999999984
No 161
>PF06941 NT5C: 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C); InterPro: IPR010708 This family consists of several 5' nucleotidase, deoxy (Pyrimidine), and cytosolic type C (NT5C) proteins. 5'(3')-deoxyribonucleotidase is a ubiquitous enzyme in mammalian cells whose physiological function is not known [].; GO: 0016791 phosphatase activity; PDB: 1Z4M_A 1Q92_A 1Q91_A 1Z4J_A 1Z4I_A 1Z4Q_A 1Z4K_A 2JAW_A 1MH9_A 1Z4L_A ....
Probab=94.37 E-value=0.062 Score=44.48 Aligned_cols=28 Identities=11% Similarity=-0.060 Sum_probs=20.3
Q ss_pred CCCHHHHHHHHHHhhcC-CEEEEcCCChh
Q 040896 43 FMSDTMRMAVHEVAHFF-PTAIVSGRCLD 70 (288)
Q Consensus 43 ~i~~~~~~aL~~L~~~~-~v~i~TGR~~~ 70 (288)
.+-+.+.++|++|.+.+ .++++|+|+..
T Consensus 73 ~p~~gA~e~l~~L~~~g~~~~~Itar~~~ 101 (191)
T PF06941_consen 73 PPIPGAVEALKKLRDKGHEIVIITARPPE 101 (191)
T ss_dssp -B-TTHHHHHHHHHTSTTEEEEEEE-SSS
T ss_pred CccHHHHHHHHHHHHcCCcEEEEEecCcc
Confidence 34567899999999886 78888888754
No 162
>TIGR03333 salvage_mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase. Members of this family are the methionine salvage enzyme MnxX, a member of the HAD-superfamily hydrolases, subfamily IB (see TIGR01488). Members are found in Bacillus subtilis and related species, paired with MtnW (TIGR03332). In most species that recycle methionine from methylthioadenosine, the single protein MtnC replaces the MtnW/MtnX pair. In B. subtilis, mtnX was first known as ykrX.
Probab=94.36 E-value=0.05 Score=45.86 Aligned_cols=34 Identities=18% Similarity=0.076 Sum_probs=26.0
Q ss_pred CCCHHHHHHHHHHhhcC-CEEEEcCCChhhHhhhc
Q 040896 43 FMSDTMRMAVHEVAHFF-PTAIVSGRCLDKVSRFV 76 (288)
Q Consensus 43 ~i~~~~~~aL~~L~~~~-~v~i~TGR~~~~l~~~~ 76 (288)
.+.|.+.+.|+.|++++ .++|+||.....+.+++
T Consensus 70 ~l~pg~~e~l~~l~~~g~~~~IvS~~~~~~i~~il 104 (214)
T TIGR03333 70 EIREGFREFVAFINEHGIPFYVISGGMDFFVYPLL 104 (214)
T ss_pred cccccHHHHHHHHHHCCCeEEEECCCcHHHHHHHH
Confidence 45566777888888774 89999999887777654
No 163
>PRK13478 phosphonoacetaldehyde hydrolase; Provisional
Probab=94.28 E-value=0.2 Score=43.75 Aligned_cols=69 Identities=10% Similarity=-0.001 Sum_probs=50.9
Q ss_pred HHHHHHHHHHhcCCC-CCCCceeEEEcCCcccHHHHHHHHhcCCc-eEEEEecCCC------------------------
Q 040896 204 KGRALEYLLDTFGFN-NASDFLPLYIGDDKTDEDAFKVIRHMGRG-YPIIVSSVPR------------------------ 257 (288)
Q Consensus 204 Kg~al~~l~~~~~~~-~~~~~~vv~~GDs~ND~~Ml~~~~~~~~g-~~v~v~na~~------------------------ 257 (288)
+...+...++++++. ++ ++++|||+.+|+.+=+.+ | .+|.+..+..
T Consensus 160 ~p~~~~~a~~~l~~~~~~---e~l~IGDs~~Di~aA~~a-----G~~~i~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (267)
T PRK13478 160 YPWMALKNAIELGVYDVA---ACVKVDDTVPGIEEGLNA-----GMWTVGVILSGNELGLSEEEYQALSAAELAARRERA 231 (267)
T ss_pred ChHHHHHHHHHcCCCCCc---ceEEEcCcHHHHHHHHHC-----CCEEEEEccCcccccCCHHHHHhcCHHHHHHHHHHH
Confidence 456788889999985 46 899999999998877776 4 3455544321
Q ss_pred -----CccceEEeCChhHHHHHHHHHHH
Q 040896 258 -----ETKALYSLRDPDEVMSFLRRLAR 280 (288)
Q Consensus 258 -----~~~A~~~~~~~~~v~~~l~~~~~ 280 (288)
+.-|++++++..++..+|+.+..
T Consensus 232 ~~~l~~~~a~~vi~~~~~l~~~l~~~~~ 259 (267)
T PRK13478 232 RARLRAAGAHYVIDTIADLPAVIADIEA 259 (267)
T ss_pred HHHHHHcCCCeehhhHHHHHHHHHHHHH
Confidence 13588999999999988864433
No 164
>PRK10725 fructose-1-P/6-phosphogluconate phosphatase; Provisional
Probab=94.25 E-value=0.024 Score=46.50 Aligned_cols=36 Identities=8% Similarity=0.002 Sum_probs=31.0
Q ss_pred CHHHHHHHHHHhcCCCCCCCceeEEEcCCcccHHHHHHH
Q 040896 203 DKGRALEYLLDTFGFNNASDFLPLYIGDDKTDEDAFKVI 241 (288)
Q Consensus 203 sKg~al~~l~~~~~~~~~~~~~vv~~GDs~ND~~Ml~~~ 241 (288)
-+-..+...+++++++++ ++++|||+.+|+..=..+
T Consensus 143 P~p~~~~~~~~~~~~~~~---~~l~igDs~~di~aA~~a 178 (188)
T PRK10725 143 PAPDTFLRCAQLMGVQPT---QCVVFEDADFGIQAARAA 178 (188)
T ss_pred CChHHHHHHHHHcCCCHH---HeEEEeccHhhHHHHHHC
Confidence 566789999999999877 999999999998876666
No 165
>PRK08942 D,D-heptose 1,7-bisphosphate phosphatase; Validated
Probab=94.23 E-value=0.15 Score=41.66 Aligned_cols=48 Identities=17% Similarity=0.210 Sum_probs=34.3
Q ss_pred cEEEEEecCCccccCcCC----CCCCCCCHHHHHHHHHHhhcC-CEEEEcCCC
Q 040896 21 KIVVFLDYDGTLSPIVED----PDKAFMSDTMRMAVHEVAHFF-PTAIVSGRC 68 (288)
Q Consensus 21 ~~li~~DlDGTL~~~~~~----~~~~~i~~~~~~aL~~L~~~~-~v~i~TGR~ 68 (288)
.|+++||.||||...... ...-.+-+.+.++|++|++.+ .++|+|..+
T Consensus 3 ~~~~~~d~~~t~~~~~~~~~~~~~~~~~~pgv~e~L~~Lk~~g~~l~I~Tn~~ 55 (181)
T PRK08942 3 MKAIFLDRDGVINVDSDGYVKSPDEWIPIPGSIEAIARLKQAGYRVVVATNQS 55 (181)
T ss_pred ccEEEEECCCCcccCCccccCCHHHeEECCCHHHHHHHHHHCCCEEEEEeCCc
Confidence 589999999999764311 112234567789999999885 788777655
No 166
>COG0241 HisB Histidinol phosphatase and related phosphatases [Amino acid transport and metabolism]
Probab=94.18 E-value=0.044 Score=44.97 Aligned_cols=45 Identities=20% Similarity=0.161 Sum_probs=32.6
Q ss_pred cEEEEEecCCccccCcC----CCCCCCCCHHHHHHHHHHhhcC-CEEEEc
Q 040896 21 KIVVFLDYDGTLSPIVE----DPDKAFMSDTMRMAVHEVAHFF-PTAIVS 65 (288)
Q Consensus 21 ~~li~~DlDGTL~~~~~----~~~~~~i~~~~~~aL~~L~~~~-~v~i~T 65 (288)
.+++|+|-||||-.... ..++-...+.++++|.+|++.+ .++++|
T Consensus 5 ~k~lflDRDGtin~d~~~yv~~~~~~~~~~g~i~al~~l~~~gy~lVvvT 54 (181)
T COG0241 5 QKALFLDRDGTINIDKGDYVDSLDDFQFIPGVIPALLKLQRAGYKLVVVT 54 (181)
T ss_pred CcEEEEcCCCceecCCCcccCcHHHhccCccHHHHHHHHHhCCCeEEEEE
Confidence 68999999999987432 1123345677889999998775 677766
No 167
>TIGR02245 HAD_IIID1 HAD-superfamily subfamily IIID hydrolase, TIGR02245. This family of sequences appears to belong to the Haloacid Dehalogenase (HAD) superfamily of enzymes by virtue of the presence of three catalytic domains, in this case: LLVLD(ILV)D(YH)T, I(VMG)IWS, and (DN)(VC)K(PA)Lx{15-17}T(IL)(MH)(FV)DD(IL)(GRS)(RK)N. Since this family has no large "cap" domain between motifs 1 and 2 or between 2 and 3, it is formally a "class III" HAD.
Probab=94.09 E-value=0.098 Score=43.56 Aligned_cols=58 Identities=16% Similarity=0.096 Sum_probs=43.0
Q ss_pred CCcEEEEEecCCccccCcCC--CCCCCCCHHHHHHHHHHhhcCCEEEEcCCChhhHhhhc
Q 040896 19 GKKIVVFLDYDGTLSPIVED--PDKAFMSDTMRMAVHEVAHFFPTAIVSGRCLDKVSRFV 76 (288)
Q Consensus 19 ~~~~li~~DlDGTL~~~~~~--~~~~~i~~~~~~aL~~L~~~~~v~i~TGR~~~~l~~~~ 76 (288)
.+++++++|||+||+++... ...-...|.+.+.|+.+.+.-.|+|=|..+...+...+
T Consensus 19 ~~kklLVLDLDeTLvh~~~~~~~~~~~kRP~l~eFL~~~~~~feIvVwTAa~~~ya~~~l 78 (195)
T TIGR02245 19 EGKKLLVLDIDYTLFDHRSPAETGEELMRPYLHEFLTSAYEDYDIVIWSATSMKWIEIKM 78 (195)
T ss_pred CCCcEEEEeCCCceEcccccCCCceEEeCCCHHHHHHHHHhCCEEEEEecCCHHHHHHHH
Confidence 46799999999999975211 11224567899999999998788888887777666643
No 168
>PLN02779 haloacid dehalogenase-like hydrolase family protein
Probab=93.99 E-value=0.034 Score=49.22 Aligned_cols=60 Identities=17% Similarity=0.112 Sum_probs=45.0
Q ss_pred CHHHHHHHHHHhcCCCCCCCceeEEEcCCcccHHHHHHHHhcCCce-EEEEecCC--CC--ccceEEeCChhH
Q 040896 203 DKGRALEYLLDTFGFNNASDFLPLYIGDDKTDEDAFKVIRHMGRGY-PIIVSSVP--RE--TKALYSLRDPDE 270 (288)
Q Consensus 203 sKg~al~~l~~~~~~~~~~~~~vv~~GDs~ND~~Ml~~~~~~~~g~-~v~v~na~--~~--~~A~~~~~~~~~ 270 (288)
-+...+..++++++++++ ++++|||+.+|+.+-+.+ |. .|.+..+. .+ ..|++++++..+
T Consensus 203 P~p~~~~~a~~~~~~~p~---~~l~IGDs~~Di~aA~~a-----G~~~i~v~~g~~~~~~l~~ad~vi~~~~~ 267 (286)
T PLN02779 203 PDPDIYNLAAETLGVDPS---RCVVVEDSVIGLQAAKAA-----GMRCIVTKSSYTADEDFSGADAVFDCLGD 267 (286)
T ss_pred CCHHHHHHHHHHhCcChH---HEEEEeCCHHhHHHHHHc-----CCEEEEEccCCccccccCCCcEEECChhh
Confidence 346688999999999887 999999999999988887 54 45554432 22 358888887654
No 169
>KOG1615 consensus Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=93.87 E-value=0.1 Score=43.02 Aligned_cols=39 Identities=13% Similarity=0.137 Sum_probs=31.8
Q ss_pred CCCCCHHHHHHHHHHhhcC-CEEEEcCCChhhHhhh---cCCC
Q 040896 41 KAFMSDTMRMAVHEVAHFF-PTAIVSGRCLDKVSRF---VQLK 79 (288)
Q Consensus 41 ~~~i~~~~~~aL~~L~~~~-~v~i~TGR~~~~l~~~---~~~~ 79 (288)
..+++|..++..++|++++ .|+++||--+..+.+. +++|
T Consensus 86 k~~lT~Gi~eLv~~L~~~~~~v~liSGGF~~~i~~Va~~Lgi~ 128 (227)
T KOG1615|consen 86 KPTLTPGIRELVSRLHARGTQVYLISGGFRQLIEPVAEQLGIP 128 (227)
T ss_pred CCccCCCHHHHHHHHHHcCCeEEEEcCChHHHHHHHHHHhCCc
Confidence 4567889999999999995 8999999888777765 5554
No 170
>PRK11587 putative phosphatase; Provisional
Probab=93.81 E-value=0.029 Score=47.39 Aligned_cols=61 Identities=11% Similarity=0.014 Sum_probs=45.2
Q ss_pred CHHHHHHHHHHhcCCCCCCCceeEEEcCCcccHHHHHHHHhcCCc-eEEEEecCCC---CccceEEeCChhHH
Q 040896 203 DKGRALEYLLDTFGFNNASDFLPLYIGDDKTDEDAFKVIRHMGRG-YPIIVSSVPR---ETKALYSLRDPDEV 271 (288)
Q Consensus 203 sKg~al~~l~~~~~~~~~~~~~vv~~GDs~ND~~Ml~~~~~~~~g-~~v~v~na~~---~~~A~~~~~~~~~v 271 (288)
-+.......++.+|++++ ++++|||+.+|+.+=+.+ | .++.+.+... ...+++++++..++
T Consensus 139 P~p~~~~~~~~~~g~~p~---~~l~igDs~~di~aA~~a-----G~~~i~v~~~~~~~~~~~~~~~~~~~~el 203 (218)
T PRK11587 139 PEPDAYLLGAQLLGLAPQ---ECVVVEDAPAGVLSGLAA-----GCHVIAVNAPADTPRLDEVDLVLHSLEQL 203 (218)
T ss_pred CCcHHHHHHHHHcCCCcc---cEEEEecchhhhHHHHHC-----CCEEEEECCCCchhhhccCCEEecchhhe
Confidence 346778888899999888 999999999998866666 5 4677765532 23577777776654
No 171
>TIGR02252 DREG-2 REG-2-like, HAD superfamily (subfamily IA) hydrolase. Most likely, these sequences, like the vast majority of HAD sequences, represent phosphatase enzymes.
Probab=93.78 E-value=0.042 Score=45.71 Aligned_cols=34 Identities=21% Similarity=0.281 Sum_probs=28.8
Q ss_pred HHHHHHHHHhcCCCCCCCceeEEEcCCc-ccHHHHHHH
Q 040896 205 GRALEYLLDTFGFNNASDFLPLYIGDDK-TDEDAFKVI 241 (288)
Q Consensus 205 g~al~~l~~~~~~~~~~~~~vv~~GDs~-ND~~Ml~~~ 241 (288)
....+.+++.+|++++ ++++|||+. +|+..=+.+
T Consensus 163 ~~~~~~~~~~~~~~~~---~~~~IgD~~~~Di~~A~~a 197 (203)
T TIGR02252 163 PKIFQEALERAGISPE---EALHIGDSLRNDYQGARAA 197 (203)
T ss_pred HHHHHHHHHHcCCChh---HEEEECCCchHHHHHHHHc
Confidence 4568889999999887 999999997 898876665
No 172
>TIGR01490 HAD-SF-IB-hyp1 HAD-superfamily subfamily IB hydrolase, TIGR01490. A subset of these sequences, including the Caulobacter crescentus CicA protein, cluster together and may represent a separate equivalog.
Probab=93.76 E-value=0.097 Score=43.39 Aligned_cols=32 Identities=13% Similarity=-0.089 Sum_probs=22.6
Q ss_pred CCHHHHHHHHHHhhcC-CEEEEcCCChhhHhhh
Q 040896 44 MSDTMRMAVHEVAHFF-PTAIVSGRCLDKVSRF 75 (288)
Q Consensus 44 i~~~~~~aL~~L~~~~-~v~i~TGR~~~~l~~~ 75 (288)
+.+.+.+.|+++++++ .++|+||.+...+..+
T Consensus 88 ~~~~~~~~l~~l~~~g~~v~ivS~s~~~~v~~~ 120 (202)
T TIGR01490 88 LYPEARDLIRWHKAEGHTIVLVSASLTILVKPL 120 (202)
T ss_pred ccHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHH
Confidence 4556677777777764 7888888887666655
No 173
>PLN02575 haloacid dehalogenase-like hydrolase
Probab=93.71 E-value=0.13 Score=47.41 Aligned_cols=70 Identities=20% Similarity=0.157 Sum_probs=48.4
Q ss_pred HHHHHHHHHHhcCCCCCCCceeEEEcCCcccHHHHHHHHhcCCceEEEEecCCCC---ccceEEeCChhHH-HHHHHHHH
Q 040896 204 KGRALEYLLDTFGFNNASDFLPLYIGDDKTDEDAFKVIRHMGRGYPIIVSSVPRE---TKALYSLRDPDEV-MSFLRRLA 279 (288)
Q Consensus 204 Kg~al~~l~~~~~~~~~~~~~vv~~GDs~ND~~Ml~~~~~~~~g~~v~v~na~~~---~~A~~~~~~~~~v-~~~l~~~~ 279 (288)
+.......++.+|+.++ ++++|||+.+|+.+-+.+. -..|.+.+.... ..|++++++.+++ ...++.++
T Consensus 274 ~Peifl~A~~~lgl~Pe---ecl~IGDS~~DIeAAk~AG----m~~IgV~~~~~~~~l~~Ad~iI~s~~EL~~~~l~~l~ 346 (381)
T PLN02575 274 DPEMFIYAAQLLNFIPE---RCIVFGNSNQTVEAAHDAR----MKCVAVASKHPIYELGAADLVVRRLDELSIVDLKNLA 346 (381)
T ss_pred CHHHHHHHHHHcCCCcc---cEEEEcCCHHHHHHHHHcC----CEEEEECCCCChhHhcCCCEEECCHHHHHHHHHhhhh
Confidence 34566667777788877 9999999999988777662 245666654321 3588899998886 44555554
Q ss_pred H
Q 040896 280 R 280 (288)
Q Consensus 280 ~ 280 (288)
.
T Consensus 347 ~ 347 (381)
T PLN02575 347 D 347 (381)
T ss_pred h
Confidence 4
No 174
>TIGR01548 HAD-SF-IA-hyp1 haloacid dehalogenase superfamily, subfamily IA hydrolase, TIGR01548. All but the Halobacterium sequence currently found are annotated as "Imidazoleglycerol-phosphate dehydratase", however, the source of the annotation could not be traced and significant homology could not be found between any of these sequences and known IGPD's.
Probab=93.63 E-value=0.033 Score=46.21 Aligned_cols=32 Identities=16% Similarity=0.138 Sum_probs=27.1
Q ss_pred HHHHHHHHHHhcCCCCCCCceeEEEcCCcccHHHH
Q 040896 204 KGRALEYLLDTFGFNNASDFLPLYIGDDKTDEDAF 238 (288)
Q Consensus 204 Kg~al~~l~~~~~~~~~~~~~vv~~GDs~ND~~Ml 238 (288)
+...+..+++.++++++ ++++|||+.+|+.+-
T Consensus 163 ~p~~~~~~~~~~~~~~~---~~i~vGD~~~Di~aA 194 (197)
T TIGR01548 163 NPEPLILAAKALGVEAC---HAAMVGDTVDDIITG 194 (197)
T ss_pred CHHHHHHHHHHhCcCcc---cEEEEeCCHHHHHHH
Confidence 45678888899999887 999999999998754
No 175
>TIGR02253 CTE7 HAD superfamily (subfamily IA) hydrolase, TIGR02253. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549).
Probab=93.59 E-value=0.1 Score=43.96 Aligned_cols=59 Identities=15% Similarity=0.211 Sum_probs=42.6
Q ss_pred HHHHHHHHHHhcCCCCCCCceeEEEcCCc-ccHHHHHHHHhcCCce-EEEEecCCC-------CccceEEeCChhH
Q 040896 204 KGRALEYLLDTFGFNNASDFLPLYIGDDK-TDEDAFKVIRHMGRGY-PIIVSSVPR-------ETKALYSLRDPDE 270 (288)
Q Consensus 204 Kg~al~~l~~~~~~~~~~~~~vv~~GDs~-ND~~Ml~~~~~~~~g~-~v~v~na~~-------~~~A~~~~~~~~~ 270 (288)
+....+.+++.+|++++ ++++|||+. +|+.+=+.+ |+ +|.+..... ...+++++.+..+
T Consensus 152 ~~~~~~~~~~~~~~~~~---~~~~igDs~~~di~~A~~a-----G~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~e 219 (221)
T TIGR02253 152 HPKIFYAALKRLGVKPE---EAVMVGDRLDKDIKGAKNL-----GMKTVWINQGKSSKMEDDVYPYPDYEISSLRE 219 (221)
T ss_pred CHHHHHHHHHHcCCChh---hEEEECCChHHHHHHHHHC-----CCEEEEECCCCCcccccccccCCCeeeCcHHh
Confidence 45688999999999887 999999997 999877777 54 566654321 1245667666554
No 176
>PRK14988 GMP/IMP nucleotidase; Provisional
Probab=93.58 E-value=0.16 Score=43.19 Aligned_cols=68 Identities=16% Similarity=0.179 Sum_probs=49.3
Q ss_pred HHHHHHHHHHhcCCCCCCCceeEEEcCCcccHHHHHHHHhcCCce--EEEEecCCC--CccceEEeCChhHHHHHHHHHH
Q 040896 204 KGRALEYLLDTFGFNNASDFLPLYIGDDKTDEDAFKVIRHMGRGY--PIIVSSVPR--ETKALYSLRDPDEVMSFLRRLA 279 (288)
Q Consensus 204 Kg~al~~l~~~~~~~~~~~~~vv~~GDs~ND~~Ml~~~~~~~~g~--~v~v~na~~--~~~A~~~~~~~~~v~~~l~~~~ 279 (288)
+....+.++++++++++ ++++|||+.+|+..=+.+ |. .+.|.+... ...+...+.+.+++.++++.+.
T Consensus 151 ~p~~~~~~~~~~~~~p~---~~l~igDs~~di~aA~~a-----G~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 222 (224)
T PRK14988 151 DQRLWQAVAEHTGLKAE---RTLFIDDSEPILDAAAQF-----GIRYCLGVTNPDSGIAEKQYQRHPSLNDYRRLIPSLM 222 (224)
T ss_pred CHHHHHHHHHHcCCChH---HEEEEcCCHHHHHHHHHc-----CCeEEEEEeCCCCCccchhccCCCcHHHHHHHhhhhc
Confidence 46788999999999888 999999999997755555 55 355666533 2345455667788888776653
No 177
>PRK10748 flavin mononucleotide phosphatase; Provisional
Probab=93.55 E-value=0.044 Score=47.05 Aligned_cols=64 Identities=13% Similarity=0.080 Sum_probs=42.4
Q ss_pred CHHHHHHHHHHhcCCCCCCCceeEEEcCC-cccHHHHHHHHhcCCce-EEEEecCCC---C-----ccceEEeCChhHHH
Q 040896 203 DKGRALEYLLDTFGFNNASDFLPLYIGDD-KTDEDAFKVIRHMGRGY-PIIVSSVPR---E-----TKALYSLRDPDEVM 272 (288)
Q Consensus 203 sKg~al~~l~~~~~~~~~~~~~vv~~GDs-~ND~~Ml~~~~~~~~g~-~v~v~na~~---~-----~~A~~~~~~~~~v~ 272 (288)
-+.......++.++++++ +++++||+ ..|+..=+.+ |. ++.+.+... . ...++.+.+..++.
T Consensus 164 P~p~~~~~a~~~~~~~~~---~~~~VGD~~~~Di~~A~~a-----G~~~i~v~~~~~~~~~~~~~~~~p~~~i~~l~el~ 235 (238)
T PRK10748 164 PFSDMYHLAAEKLNVPIG---EILHVGDDLTTDVAGAIRC-----GMQACWINPENGDLMQTWDSRLLPHIEISRLASLT 235 (238)
T ss_pred CcHHHHHHHHHHcCCChh---HEEEEcCCcHHHHHHHHHC-----CCeEEEEcCCCccccccccccCCCCEEECCHHHHH
Confidence 346678888899999877 99999999 5998876665 54 455543211 1 13445566666655
Q ss_pred HH
Q 040896 273 SF 274 (288)
Q Consensus 273 ~~ 274 (288)
++
T Consensus 236 ~~ 237 (238)
T PRK10748 236 SL 237 (238)
T ss_pred hh
Confidence 43
No 178
>PRK13288 pyrophosphatase PpaX; Provisional
Probab=93.45 E-value=0.039 Score=46.40 Aligned_cols=14 Identities=43% Similarity=0.532 Sum_probs=13.0
Q ss_pred cEEEEEecCCcccc
Q 040896 21 KIVVFLDYDGTLSP 34 (288)
Q Consensus 21 ~~li~~DlDGTL~~ 34 (288)
.++|+||+||||++
T Consensus 3 ~~~viFD~DGTL~d 16 (214)
T PRK13288 3 INTVLFDLDGTLIN 16 (214)
T ss_pred ccEEEEeCCCcCcc
Confidence 57899999999998
No 179
>PRK11590 hypothetical protein; Provisional
Probab=93.42 E-value=0.042 Score=46.28 Aligned_cols=17 Identities=47% Similarity=0.747 Sum_probs=14.6
Q ss_pred cCCcEEEEEecCCcccc
Q 040896 18 KGKKIVVFLDYDGTLSP 34 (288)
Q Consensus 18 ~~~~~li~~DlDGTL~~ 34 (288)
..++++++||+||||+.
T Consensus 3 ~~~~k~~iFD~DGTL~~ 19 (211)
T PRK11590 3 THERRVVFFDLDGTLHQ 19 (211)
T ss_pred CccceEEEEecCCCCcc
Confidence 34678999999999995
No 180
>PLN02770 haloacid dehalogenase-like hydrolase family protein
Probab=93.42 E-value=0.038 Score=47.76 Aligned_cols=68 Identities=13% Similarity=0.163 Sum_probs=48.6
Q ss_pred CHHHHHHHHHHhcCCCCCCCceeEEEcCCcccHHHHHHHHhcCCce-EEEEecCCC-----CccceEEeCChhH--HHHH
Q 040896 203 DKGRALEYLLDTFGFNNASDFLPLYIGDDKTDEDAFKVIRHMGRGY-PIIVSSVPR-----ETKALYSLRDPDE--VMSF 274 (288)
Q Consensus 203 sKg~al~~l~~~~~~~~~~~~~vv~~GDs~ND~~Ml~~~~~~~~g~-~v~v~na~~-----~~~A~~~~~~~~~--v~~~ 274 (288)
-+.....+.+++++++++ ++++|||+.+|+.+=+.+ |. .+.+..+.. ...|++++++..+ +.+.
T Consensus 165 P~p~~~~~a~~~~~~~~~---~~l~vgDs~~Di~aA~~a-----Gi~~i~v~~g~~~~~l~~~~a~~vi~~~~e~~~~~~ 236 (248)
T PLN02770 165 PHPDPYLKALEVLKVSKD---HTFVFEDSVSGIKAGVAA-----GMPVVGLTTRNPESLLMEAKPTFLIKDYEDPKLWAA 236 (248)
T ss_pred CChHHHHHHHHHhCCChh---HEEEEcCCHHHHHHHHHC-----CCEEEEEeCCCCHHHHhhcCCCEEeccchhhHHHHH
Confidence 456788999999999887 999999999999877766 54 455543322 2368888888766 4444
Q ss_pred HHHH
Q 040896 275 LRRL 278 (288)
Q Consensus 275 l~~~ 278 (288)
|+.+
T Consensus 237 ~~~~ 240 (248)
T PLN02770 237 LEEL 240 (248)
T ss_pred Hhhc
Confidence 4433
No 181
>TIGR03351 PhnX-like phosphonatase-like hydrolase. This clade of sequences are the closest homologs to the PhnX enzyme, phosphonoacetaldehyde (Pald) hydrolase (phosphonatase, TIGR01422). This phosphonatase-like enzyme and PhnX itself are members of the haloacid dehalogenase (HAD) superfamily (pfam00702) having a a number of distinctive features that set them apart from typical HAD enzymes. The typical HAD N-terminal motif DxDx(T/V) here is DxAGT and the usual conserved lysine prior to the C-terminal motif is instead an arginine. Also distinctive of phosphonatase, and particular to its bi-catalytic mechanism is a conserved lysine in the variable "cap" domain. This lysine forms a Schiff base with the aldehyde of phosphonoacetaldehyde, providing, through the resulting positive charge, a polarization of the C-P bond necesary for cleavage as well as a route to the initial product of cleavage, an ene-amine. The conservation of these elements in this phosphonatase-like enzyme suggests that the
Probab=93.28 E-value=0.055 Score=45.58 Aligned_cols=65 Identities=14% Similarity=0.037 Sum_probs=47.4
Q ss_pred CHHHHHHHHHHhcCCC-CCCCceeEEEcCCcccHHHHHHHHhcCCceE--EEEecCC--C----CccceEEeCChhHHHH
Q 040896 203 DKGRALEYLLDTFGFN-NASDFLPLYIGDDKTDEDAFKVIRHMGRGYP--IIVSSVP--R----ETKALYSLRDPDEVMS 273 (288)
Q Consensus 203 sKg~al~~l~~~~~~~-~~~~~~vv~~GDs~ND~~Ml~~~~~~~~g~~--v~v~na~--~----~~~A~~~~~~~~~v~~ 273 (288)
-+...+...+++++++ ++ ++++|||+.+|+.+-+.+ |+. +.+..+. . ...+++++++..++..
T Consensus 146 P~p~~~~~a~~~~~~~~~~---~~~~igD~~~Di~aa~~a-----G~~~~i~~~~g~~~~~~~~~~~~~~~i~~~~~l~~ 217 (220)
T TIGR03351 146 PAPDLILRAMELTGVQDVQ---SVAVAGDTPNDLEAGINA-----GAGAVVGVLTGAHDAEELSRHPHTHVLDSVADLPA 217 (220)
T ss_pred CCHHHHHHHHHHcCCCChh---HeEEeCCCHHHHHHHHHC-----CCCeEEEEecCCCcHHHHhhcCCceeecCHHHHHH
Confidence 4678899999999986 56 999999999999988877 654 4444332 1 1357778888777655
Q ss_pred HH
Q 040896 274 FL 275 (288)
Q Consensus 274 ~l 275 (288)
.+
T Consensus 218 ~~ 219 (220)
T TIGR03351 218 LL 219 (220)
T ss_pred hh
Confidence 43
No 182
>KOG0202 consensus Ca2+ transporting ATPase [Inorganic ion transport and metabolism]
Probab=93.24 E-value=0.18 Score=50.21 Aligned_cols=60 Identities=22% Similarity=0.200 Sum_probs=46.2
Q ss_pred EEEEeCCCCCCHHHHHHHHHHhcCCCCCCCceeEEEcCCcccHHHHHHHHhcCCceEEEEe-cCCC--CccceEEeCC
Q 040896 193 VMEIRPCIDWDKGRALEYLLDTFGFNNASDFLPLYIGDDKTDEDAFKVIRHMGRGYPIIVS-SVPR--ETKALYSLRD 267 (288)
Q Consensus 193 ~ieI~~~~~~sKg~al~~l~~~~~~~~~~~~~vv~~GDs~ND~~Ml~~~~~~~~g~~v~v~-na~~--~~~A~~~~~~ 267 (288)
|--..|+ .|-.-++.|.+. .+ -|..-||+-||-+.|+.+ ..||||| ++.+ |.+|+.|+.|
T Consensus 658 FaR~~P~---HK~kIVeaLq~~----ge---ivAMTGDGVNDApALK~A-----dIGIAMG~~GTdVaKeAsDMVL~D 720 (972)
T KOG0202|consen 658 FARAEPQ---HKLKIVEALQSR----GE---VVAMTGDGVNDAPALKKA-----DIGIAMGISGTDVAKEASDMVLAD 720 (972)
T ss_pred EEecCch---hHHHHHHHHHhc----CC---EEEecCCCccchhhhhhc-----ccceeecCCccHhhHhhhhcEEec
Confidence 3444455 888888777664 33 667779999999999999 5999999 7765 5789988864
No 183
>TIGR01544 HAD-SF-IE haloacid dehalogenase superfamily, subfamily IE hydrolase, TIGR01544. This group of sequences was found during searches for members of the haloacid dehalogenase (HAD) superfamily. All of the conserved catalytic motifs are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches (IA, TIGR01493, TIGR01509, TIGR01549; IB, TIGR01488; IC, TIGR01494; ID, TIGR01658; IF TIGR01545) of that subfamily as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.
Probab=93.20 E-value=0.093 Score=46.10 Aligned_cols=58 Identities=17% Similarity=0.300 Sum_probs=42.2
Q ss_pred CCcEEEEEecCCccccCcC-CC-----------CCCCCCHHHHHHHHHHhhc-CCEEEEcCCChhhHhhhc
Q 040896 19 GKKIVVFLDYDGTLSPIVE-DP-----------DKAFMSDTMRMAVHEVAHF-FPTAIVSGRCLDKVSRFV 76 (288)
Q Consensus 19 ~~~~li~~DlDGTL~~~~~-~~-----------~~~~i~~~~~~aL~~L~~~-~~v~i~TGR~~~~l~~~~ 76 (288)
..+..|++|+|.||+.... +. ....+++..++.+++|.++ .++=+-+..+.++=.+++
T Consensus 20 ~~~lqvisDFD~Tlt~~~~~~g~~~~s~~~~~~~~~~~~~~~~~~~~~l~~~Y~PiE~d~~~~~~eK~~~m 90 (277)
T TIGR01544 20 AAKLQIISDFDYTLSRFSYEDGKRCPTCHGIFDNCKLLTDECRKKLLQLKEKYYPIEVDPVLTVEEKYPYM 90 (277)
T ss_pred hhheEEeeccCccceeeecCCCCCCcchHhHHhhCCCCCHHHHHHHHHHHhhccceecCCCCChHHhhhHH
Confidence 3567799999999997541 11 2456788889999999887 577777777776644443
No 184
>KOG1615 consensus Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=93.19 E-value=0.014 Score=47.85 Aligned_cols=43 Identities=19% Similarity=0.258 Sum_probs=34.0
Q ss_pred EEEeCCCCCCHHHHHHHHHHhcCCCCCCCceeEEEcCCcccHHHHHHHH
Q 040896 194 MEIRPCIDWDKGRALEYLLDTFGFNNASDFLPLYIGDDKTDEDAFKVIR 242 (288)
Q Consensus 194 ieI~~~~~~sKg~al~~l~~~~~~~~~~~~~vv~~GDs~ND~~Ml~~~~ 242 (288)
.+-+.. +..|+.+|+.+++.++.. .++.+||+.||++|..-+.
T Consensus 151 ~~ptsd-sggKa~~i~~lrk~~~~~-----~~~mvGDGatDlea~~pa~ 193 (227)
T KOG1615|consen 151 NEPTSD-SGGKAEVIALLRKNYNYK-----TIVMVGDGATDLEAMPPAD 193 (227)
T ss_pred CCcccc-CCccHHHHHHHHhCCChh-----eeEEecCCccccccCCchh
Confidence 334455 678999999999955554 8999999999999877654
No 185
>PRK10826 2-deoxyglucose-6-phosphatase; Provisional
Probab=92.95 E-value=0.045 Score=46.30 Aligned_cols=17 Identities=24% Similarity=0.389 Sum_probs=14.9
Q ss_pred cCCcEEEEEecCCcccc
Q 040896 18 KGKKIVVFLDYDGTLSP 34 (288)
Q Consensus 18 ~~~~~li~~DlDGTL~~ 34 (288)
....+.|+||+||||++
T Consensus 4 ~~~~k~iiFD~DGTL~d 20 (222)
T PRK10826 4 PRQILAAIFDMDGLLID 20 (222)
T ss_pred cccCcEEEEcCCCCCCc
Confidence 34679999999999998
No 186
>COG3700 AphA Acid phosphatase (class B) [General function prediction only]
Probab=92.93 E-value=0.24 Score=40.26 Aligned_cols=65 Identities=17% Similarity=0.161 Sum_probs=43.6
Q ss_pred HHHHHHhh-cCCcEEEEEecCCccccCcCC---------C-------------------CCCCCCHHHHHHHHHHhhc-C
Q 040896 10 FDRMVAAA-KGKKIVVFLDYDGTLSPIVED---------P-------------------DKAFMSDTMRMAVHEVAHF-F 59 (288)
Q Consensus 10 ~~~~~~~~-~~~~~li~~DlDGTL~~~~~~---------~-------------------~~~~i~~~~~~aL~~L~~~-~ 59 (288)
.++|-... .++...+-||+|.|++..... | +...|+.+.-..|-.++.+ +
T Consensus 51 vaqI~~SLeG~~Pi~VsFDIDDTvLFsSp~F~~Gk~~~sPgs~DyLknq~FW~~vn~g~D~~SIPKevA~qLI~MHq~RG 130 (237)
T COG3700 51 VAQIENSLEGRPPIAVSFDIDDTVLFSSPGFWRGKKYFSPGSEDYLKNQVFWEKVNNGWDEFSIPKEVARQLIDMHQRRG 130 (237)
T ss_pred HHHHHhhhcCCCCeeEeeccCCeeEecccccccCccccCCChHHhhcCHHHHHHHhcCCccccchHHHHHHHHHHHHhcC
Confidence 34555553 457788999999999963211 0 1345677666666666555 7
Q ss_pred -CEEEEcCCChhhHhh
Q 040896 60 -PTAIVSGRCLDKVSR 74 (288)
Q Consensus 60 -~v~i~TGR~~~~l~~ 74 (288)
.|+.+|||+......
T Consensus 131 D~i~FvTGRt~gk~d~ 146 (237)
T COG3700 131 DAIYFVTGRTPGKTDT 146 (237)
T ss_pred CeEEEEecCCCCcccc
Confidence 899999999976554
No 187
>TIGR03351 PhnX-like phosphonatase-like hydrolase. This clade of sequences are the closest homologs to the PhnX enzyme, phosphonoacetaldehyde (Pald) hydrolase (phosphonatase, TIGR01422). This phosphonatase-like enzyme and PhnX itself are members of the haloacid dehalogenase (HAD) superfamily (pfam00702) having a a number of distinctive features that set them apart from typical HAD enzymes. The typical HAD N-terminal motif DxDx(T/V) here is DxAGT and the usual conserved lysine prior to the C-terminal motif is instead an arginine. Also distinctive of phosphonatase, and particular to its bi-catalytic mechanism is a conserved lysine in the variable "cap" domain. This lysine forms a Schiff base with the aldehyde of phosphonoacetaldehyde, providing, through the resulting positive charge, a polarization of the C-P bond necesary for cleavage as well as a route to the initial product of cleavage, an ene-amine. The conservation of these elements in this phosphonatase-like enzyme suggests that the
Probab=92.92 E-value=0.22 Score=41.94 Aligned_cols=29 Identities=21% Similarity=0.169 Sum_probs=19.6
Q ss_pred cEEEEEecCCccccCcCCCCCCCCCHHHHHHHHHHhhc
Q 040896 21 KIVVFLDYDGTLSPIVEDPDKAFMSDTMRMAVHEVAHF 58 (288)
Q Consensus 21 ~~li~~DlDGTL~~~~~~~~~~~i~~~~~~aL~~L~~~ 58 (288)
.++|+||+||||++. . +...++++++.+.
T Consensus 1 ~k~iiFD~DGTL~ds-----~----~~~~~~~~~~~~~ 29 (220)
T TIGR03351 1 ISLVVLDMAGTTVDE-----D----GLVYRALRQAVTA 29 (220)
T ss_pred CcEEEEecCCCeecc-----C----chHHHHHHHHHHH
Confidence 378999999999983 2 2345555555444
No 188
>TIGR02009 PGMB-YQAB-SF beta-phosphoglucomutase family hydrolase. All of these are members of the larger Haloacid dehalogenase (HAD) subfamily IA and include the "variant 3" glu-asp version of the third conserved HAD domain (TIGR01509).
Probab=92.83 E-value=0.05 Score=44.32 Aligned_cols=36 Identities=8% Similarity=0.049 Sum_probs=30.2
Q ss_pred CHHHHHHHHHHhcCCCCCCCceeEEEcCCcccHHHHHHH
Q 040896 203 DKGRALEYLLDTFGFNNASDFLPLYIGDDKTDEDAFKVI 241 (288)
Q Consensus 203 sKg~al~~l~~~~~~~~~~~~~vv~~GDs~ND~~Ml~~~ 241 (288)
.+......+++.++++++ +++++||+.+|+.+-+.+
T Consensus 143 p~~~~~~~~~~~~~~~~~---~~v~IgD~~~di~aA~~~ 178 (185)
T TIGR02009 143 PHPETFLLAAELLGVSPN---ECVVFEDALAGVQAARAA 178 (185)
T ss_pred CChHHHHHHHHHcCCCHH---HeEEEeCcHhhHHHHHHC
Confidence 345677889999999877 999999999999877766
No 189
>KOG0207 consensus Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=92.76 E-value=0.23 Score=49.83 Aligned_cols=70 Identities=17% Similarity=0.131 Sum_probs=54.2
Q ss_pred ceEEEEeCCCCCCHHHHHHHHHHhcCCCCCCCceeEEEcCCcccHHHHHHHHhcCCceEEEEecCCCC--ccceEEe--C
Q 040896 191 KKVMEIRPCIDWDKGRALEYLLDTFGFNNASDFLPLYIGDDKTDEDAFKVIRHMGRGYPIIVSSVPRE--TKALYSL--R 266 (288)
Q Consensus 191 ~~~ieI~~~~~~sKg~al~~l~~~~~~~~~~~~~vv~~GDs~ND~~Ml~~~~~~~~g~~v~v~na~~~--~~A~~~~--~ 266 (288)
..+-|+.|. .|..-++.|.+.- . .|+.+||+.||-|.|..+ ..||+++.+..- ..|++++ +
T Consensus 764 ~V~aev~P~---~K~~~Ik~lq~~~----~---~VaMVGDGINDaPALA~A-----dVGIaig~gs~vAieaADIVLmrn 828 (951)
T KOG0207|consen 764 NVYAEVLPE---QKAEKIKEIQKNG----G---PVAMVGDGINDAPALAQA-----DVGIAIGAGSDVAIEAADIVLMRN 828 (951)
T ss_pred eEEeccCch---hhHHHHHHHHhcC----C---cEEEEeCCCCccHHHHhh-----ccceeeccccHHHHhhCCEEEEcc
Confidence 456888888 8999999988764 2 789999999999999999 589999888542 5788886 3
Q ss_pred ChhHHHHHH
Q 040896 267 DPDEVMSFL 275 (288)
Q Consensus 267 ~~~~v~~~l 275 (288)
+..+|...+
T Consensus 829 ~L~~v~~ai 837 (951)
T KOG0207|consen 829 DLRDVPFAI 837 (951)
T ss_pred chhhhHHHH
Confidence 444544433
No 190
>TIGR01422 phosphonatase phosphonoacetaldehyde hydrolase. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases (pfam00702), and contains a modified version of the conserved catalytic motifs of that superfamily: the first motif is usually DxDx(T/V), here it is DxAxT, and in the third motif the normal conserved lysine is instead an arginine. Additionally, the enzyme contains a unique conserved catalytic lysine (B. cereus pos. 53) which is involved in the binding and activation of the substrate through the formation of a Schiff base. The substrate of this enzyme is the product of 2-aminoethylphosphonate (AEP) transaminase, phosphonoacetaldehyde. This degradation pathway for AEP may be related to its toxic properties which are utilized by microorganisms as a chemical warfare agent.
Probab=92.65 E-value=0.11 Score=45.00 Aligned_cols=64 Identities=14% Similarity=0.091 Sum_probs=46.5
Q ss_pred HHHHHHHHHHhcCCC-CCCCceeEEEcCCcccHHHHHHHHhcCCc-eEEEEecCCC------------------------
Q 040896 204 KGRALEYLLDTFGFN-NASDFLPLYIGDDKTDEDAFKVIRHMGRG-YPIIVSSVPR------------------------ 257 (288)
Q Consensus 204 Kg~al~~l~~~~~~~-~~~~~~vv~~GDs~ND~~Ml~~~~~~~~g-~~v~v~na~~------------------------ 257 (288)
+.......++++++. ++ ++++|||+.+|+.+=+.+ | .+|.+..+..
T Consensus 158 ~p~~~~~a~~~l~~~~~~---~~l~IGDs~~Di~aA~~a-----Gi~~i~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (253)
T TIGR01422 158 APWMALKNAIELGVYDVA---ACVKVGDTVPDIEEGRNA-----GMWTVGLILSSNELGLSEEEYRALDPAELEARRAEA 229 (253)
T ss_pred CHHHHHHHHHHcCCCCch---heEEECCcHHHHHHHHHC-----CCeEEEEecCCcccCCCHHHHHhCCHHHHHHHHHHH
Confidence 456778888899984 66 899999999998877777 4 4566654321
Q ss_pred -----CccceEEeCChhHHHHHH
Q 040896 258 -----ETKALYSLRDPDEVMSFL 275 (288)
Q Consensus 258 -----~~~A~~~~~~~~~v~~~l 275 (288)
+..|++++++..++..+|
T Consensus 230 ~~~l~~~~~~~v~~~~~el~~~~ 252 (253)
T TIGR01422 230 TARLKAAGAHYVIDTLAELPAVI 252 (253)
T ss_pred HHHHHhcCCCEehhcHHHHHHhh
Confidence 135788888888876554
No 191
>TIGR01494 ATPase_P-type ATPase, P-type (transporting), HAD superfamily, subfamily IC. The crystal structure of one calcium-pumping ATPase and an analysis of the fold of the catalytic domain of the P-type ATPases have been published. These reveal that the catalytic core of these enzymes is a haloacid dehalogenase(HAD)-type aspartate-nucleophile hydrolase. The location of the ATP-binding loop in between the first and second HAD conserved catalytic motifs defines these enzymes as members of subfamily I of the HAD superfamily (see also TIGR01493, TIGR01509, TIGR01549, TIGR01544 and TIGR01545). Based on these classifications, the P-type ATPase _superfamily_ corresponds to the IC subfamily of the HAD superfamily.
Probab=92.65 E-value=0.18 Score=48.23 Aligned_cols=57 Identities=25% Similarity=0.282 Sum_probs=43.7
Q ss_pred EEEEeCCCCCCHHHHHHHHHHhcCCCCCCCceeEEEcCCcccHHHHHHHHhcCCceEEEEecCCCCccceEEeCC
Q 040896 193 VMEIRPCIDWDKGRALEYLLDTFGFNNASDFLPLYIGDDKTDEDAFKVIRHMGRGYPIIVSSVPRETKALYSLRD 267 (288)
Q Consensus 193 ~ieI~~~~~~sKg~al~~l~~~~~~~~~~~~~vv~~GDs~ND~~Ml~~~~~~~~g~~v~v~na~~~~~A~~~~~~ 267 (288)
+-+..|. .|..-++.+.+. | . .++.+||+.||.+|++.+ ..|++|+ .+..|++++.+
T Consensus 387 ~~~~~p~---~K~~~v~~l~~~-g---~---~v~~vGDg~nD~~al~~A-----dvgia~~---a~~~adivl~~ 443 (499)
T TIGR01494 387 FARVTPE---EKAALVEALQKK-G---R---VVAMTGDGVNDAPALKKA-----DVGIAMG---AKAAADIVLLD 443 (499)
T ss_pred eeccCHH---HHHHHHHHHHHC-C---C---EEEEECCChhhHHHHHhC-----CCccccc---hHHhCCeEEec
Confidence 4556665 888888887543 2 3 899999999999999998 6888887 35568888753
No 192
>COG3882 FkbH Predicted enzyme involved in methoxymalonyl-ACP biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=92.49 E-value=0.37 Score=45.17 Aligned_cols=74 Identities=20% Similarity=0.153 Sum_probs=50.7
Q ss_pred ccchhhHHHHHHh-hcCCcEEEEEecCCccccCcC-----------CCCCCCCCHHHHHHHHHHhhcC-CEEEEcCCChh
Q 040896 4 PSALDTFDRMVAA-AKGKKIVVFLDYDGTLSPIVE-----------DPDKAFMSDTMRMAVHEVAHFF-PTAIVSGRCLD 70 (288)
Q Consensus 4 ~~~~~~~~~~~~~-~~~~~~li~~DlDGTL~~~~~-----------~~~~~~i~~~~~~aL~~L~~~~-~v~i~TGR~~~ 70 (288)
|.|-.--.+++.+ ..+..|.+++|||+||..=.. +...+..-....+.+..|.+++ .++|||=....
T Consensus 204 ~l~~~ei~Sl~~A~~g~~kK~LVLDLDNTLWGGVIGedGv~GI~Ls~~~~G~~fk~fQ~~Ik~l~kqGVlLav~SKN~~~ 283 (574)
T COG3882 204 PLAADEIASLLAAMSGKSKKALVLDLDNTLWGGVIGEDGVDGIRLSNSAEGEAFKTFQNFIKGLKKQGVLLAVCSKNTEK 283 (574)
T ss_pred hHhhHHHHHHHHHhhCcccceEEEecCCcccccccccccccceeecCCCCchhHHHHHHHHHHHHhccEEEEEecCCchh
Confidence 3333334444444 567789999999999996110 1112333456677778888886 88999999999
Q ss_pred hHhhhcC
Q 040896 71 KVSRFVQ 77 (288)
Q Consensus 71 ~l~~~~~ 77 (288)
.+.+.|.
T Consensus 284 da~evF~ 290 (574)
T COG3882 284 DAKEVFR 290 (574)
T ss_pred hHHHHHh
Confidence 9998774
No 193
>PRK06769 hypothetical protein; Validated
Probab=92.42 E-value=0.26 Score=40.15 Aligned_cols=65 Identities=17% Similarity=0.177 Sum_probs=46.1
Q ss_pred CHHHHHHHHHHhcCCCCCCCceeEEEcCCcccHHHHHHHHhcCCce-EEEEecCCC------------CccceEEeCChh
Q 040896 203 DKGRALEYLLDTFGFNNASDFLPLYIGDDKTDEDAFKVIRHMGRGY-PIIVSSVPR------------ETKALYSLRDPD 269 (288)
Q Consensus 203 sKg~al~~l~~~~~~~~~~~~~vv~~GDs~ND~~Ml~~~~~~~~g~-~v~v~na~~------------~~~A~~~~~~~~ 269 (288)
-+......++++++.+++ +++++||+.+|+.+=+.+ |+ +|.+..+.. +..+++++.+..
T Consensus 94 P~p~~~~~~~~~l~~~p~---~~i~IGD~~~Di~aA~~a-----Gi~~i~v~~g~~~~~~~~~~~~l~~~~~~~~~~~~~ 165 (173)
T PRK06769 94 PSTGMLLQAAEKHGLDLT---QCAVIGDRWTDIVAAAKV-----NATTILVRTGAGYDALHTYRDKWAHIEPNYIAENFE 165 (173)
T ss_pred CCHHHHHHHHHHcCCCHH---HeEEEcCCHHHHHHHHHC-----CCeEEEEecCCCchhhhhhhcccccCCCcchhhCHH
Confidence 345677888888998877 999999999998876666 43 455544321 124667777777
Q ss_pred HHHHHH
Q 040896 270 EVMSFL 275 (288)
Q Consensus 270 ~v~~~l 275 (288)
++..+|
T Consensus 166 el~~~l 171 (173)
T PRK06769 166 DAVNWI 171 (173)
T ss_pred HHHHHH
Confidence 776654
No 194
>TIGR01993 Pyr-5-nucltdase pyrimidine 5'-nucleotidase. These enzymes are members of the haloacid dehalogenase (HAD) superfamily of hydrolases, specifically the IA subfamily (variant 3, TIGR01509).
Probab=92.37 E-value=0.12 Score=42.32 Aligned_cols=35 Identities=20% Similarity=0.279 Sum_probs=28.8
Q ss_pred HHHHHHHHHHhcCCCCCCCceeEEEcCCcccHHHHHHH
Q 040896 204 KGRALEYLLDTFGFNNASDFLPLYIGDDKTDEDAFKVI 241 (288)
Q Consensus 204 Kg~al~~l~~~~~~~~~~~~~vv~~GDs~ND~~Ml~~~ 241 (288)
+-...+.+++.+|++++ ++++|||+..|+..=+.+
T Consensus 143 ~p~~~~~~~~~~~~~~~---~~l~vgD~~~di~aA~~~ 177 (184)
T TIGR01993 143 SPQAYEKALREAGVDPE---RAIFFDDSARNIAAAKAL 177 (184)
T ss_pred CHHHHHHHHHHhCCCcc---ceEEEeCCHHHHHHHHHc
Confidence 45688899999999887 999999999887755554
No 195
>PLN02575 haloacid dehalogenase-like hydrolase
Probab=92.18 E-value=0.54 Score=43.34 Aligned_cols=16 Identities=6% Similarity=0.264 Sum_probs=14.1
Q ss_pred CCcEEEEEecCCcccc
Q 040896 19 GKKIVVFLDYDGTLSP 34 (288)
Q Consensus 19 ~~~~li~~DlDGTL~~ 34 (288)
...+.++||+||||++
T Consensus 129 ~~~~~VIFDlDGTLID 144 (381)
T PLN02575 129 CGWLGAIFEWEGVIIE 144 (381)
T ss_pred CCCCEEEEcCcCccee
Confidence 4578999999999998
No 196
>TIGR01422 phosphonatase phosphonoacetaldehyde hydrolase. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases (pfam00702), and contains a modified version of the conserved catalytic motifs of that superfamily: the first motif is usually DxDx(T/V), here it is DxAxT, and in the third motif the normal conserved lysine is instead an arginine. Additionally, the enzyme contains a unique conserved catalytic lysine (B. cereus pos. 53) which is involved in the binding and activation of the substrate through the formation of a Schiff base. The substrate of this enzyme is the product of 2-aminoethylphosphonate (AEP) transaminase, phosphonoacetaldehyde. This degradation pathway for AEP may be related to its toxic properties which are utilized by microorganisms as a chemical warfare agent.
Probab=92.17 E-value=0.35 Score=41.70 Aligned_cols=14 Identities=29% Similarity=0.389 Sum_probs=13.1
Q ss_pred cEEEEEecCCcccc
Q 040896 21 KIVVFLDYDGTLSP 34 (288)
Q Consensus 21 ~~li~~DlDGTL~~ 34 (288)
.+.|+||+||||++
T Consensus 2 ~k~viFD~DGTLiD 15 (253)
T TIGR01422 2 IEAVIFDWAGTTVD 15 (253)
T ss_pred ceEEEEeCCCCeec
Confidence 57899999999999
No 197
>PRK14988 GMP/IMP nucleotidase; Provisional
Probab=92.02 E-value=0.077 Score=45.15 Aligned_cols=15 Identities=47% Similarity=0.532 Sum_probs=13.8
Q ss_pred CcEEEEEecCCcccc
Q 040896 20 KKIVVFLDYDGTLSP 34 (288)
Q Consensus 20 ~~~li~~DlDGTL~~ 34 (288)
+.++|+|||||||++
T Consensus 9 ~~k~vIFDlDGTL~d 23 (224)
T PRK14988 9 DVDTVLLDMDGTLLD 23 (224)
T ss_pred cCCEEEEcCCCCccc
Confidence 468999999999999
No 198
>PHA02597 30.2 hypothetical protein; Provisional
Probab=91.98 E-value=0.075 Score=44.00 Aligned_cols=62 Identities=13% Similarity=0.091 Sum_probs=40.9
Q ss_pred CHHHHHHHHHHhcCCCCCCCceeEEEcCCcccHHHHHHH-HhcCCceEEEEecCCC--CccceEEeCChhHHH
Q 040896 203 DKGRALEYLLDTFGFNNASDFLPLYIGDDKTDEDAFKVI-RHMGRGYPIIVSSVPR--ETKALYSLRDPDEVM 272 (288)
Q Consensus 203 sKg~al~~l~~~~~~~~~~~~~vv~~GDs~ND~~Ml~~~-~~~~~g~~v~v~na~~--~~~A~~~~~~~~~v~ 272 (288)
.|...+..++++++ ++ .+++|||+.+|+..-+.+ + | --+|.+..+.. .....|.+++..++.
T Consensus 131 ~kp~~~~~a~~~~~--~~---~~v~vgDs~~di~aA~~a~~--G-i~~i~~~~~~~~~~~~~~~~~~~~~~~~ 195 (197)
T PHA02597 131 SKEKLFIKAKEKYG--DR---VVCFVDDLAHNLDAAHEALS--Q-LPVIHMLRGERDHIPKLAHRVKSWNDIE 195 (197)
T ss_pred ccHHHHHHHHHHhC--CC---cEEEeCCCHHHHHHHHHHHc--C-CcEEEecchhhccccchhhhhccHHHHh
Confidence 46788999999999 44 899999999997765553 1 1 22455544432 234557777766654
No 199
>TIGR02254 YjjG/YfnB HAD superfamily (subfamily IA) hydrolase, TIGR02254. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549). Most likely, these enzymes are phosphatases.
Probab=91.93 E-value=0.096 Score=44.02 Aligned_cols=64 Identities=20% Similarity=0.343 Sum_probs=45.3
Q ss_pred CHHHHHHHHHHhc-CCCCCCCceeEEEcCCc-ccHHHHHHHHhcCCce-EEEEecC--C-C-CccceEEeCChhHHHHH
Q 040896 203 DKGRALEYLLDTF-GFNNASDFLPLYIGDDK-TDEDAFKVIRHMGRGY-PIIVSSV--P-R-ETKALYSLRDPDEVMSF 274 (288)
Q Consensus 203 sKg~al~~l~~~~-~~~~~~~~~vv~~GDs~-ND~~Ml~~~~~~~~g~-~v~v~na--~-~-~~~A~~~~~~~~~v~~~ 274 (288)
-+....+..++.+ +++++ +++++||+. +|+.+=+.+ |. ++.+... . . ...+++++++..++..+
T Consensus 153 P~~~~~~~~~~~~~~~~~~---~~v~igD~~~~di~~A~~~-----G~~~i~~~~~~~~~~~~~~~~~~~~~~~el~~~ 223 (224)
T TIGR02254 153 PDKEIFNYALERMPKFSKE---EVLMIGDSLTADIKGGQNA-----GLDTCWMNPDMHPNPDDIIPTYEIRSLEELYEI 223 (224)
T ss_pred CCHHHHHHHHHHhcCCCch---heEEECCCcHHHHHHHHHC-----CCcEEEECCCCCCCCCCCCCceEECCHHHHHhh
Confidence 4456788888999 99887 999999997 898877766 54 3444322 1 1 23567788888877654
No 200
>PRK13478 phosphonoacetaldehyde hydrolase; Provisional
Probab=91.87 E-value=0.14 Score=44.66 Aligned_cols=14 Identities=29% Similarity=0.408 Sum_probs=13.2
Q ss_pred cEEEEEecCCcccc
Q 040896 21 KIVVFLDYDGTLSP 34 (288)
Q Consensus 21 ~~li~~DlDGTL~~ 34 (288)
.++|+||+||||++
T Consensus 4 ~k~vIFDlDGTLiD 17 (267)
T PRK13478 4 IQAVIFDWAGTTVD 17 (267)
T ss_pred eEEEEEcCCCCeec
Confidence 58999999999999
No 201
>PRK13225 phosphoglycolate phosphatase; Provisional
Probab=91.81 E-value=0.065 Score=47.15 Aligned_cols=16 Identities=31% Similarity=0.567 Sum_probs=14.1
Q ss_pred CCcEEEEEecCCcccc
Q 040896 19 GKKIVVFLDYDGTLSP 34 (288)
Q Consensus 19 ~~~~li~~DlDGTL~~ 34 (288)
+..+.++||+||||++
T Consensus 60 ~~~k~vIFDlDGTLiD 75 (273)
T PRK13225 60 QTLQAIIFDFDGTLVD 75 (273)
T ss_pred hhcCEEEECCcCcccc
Confidence 3468899999999999
No 202
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=91.66 E-value=0.34 Score=39.63 Aligned_cols=15 Identities=53% Similarity=0.906 Sum_probs=12.6
Q ss_pred CcEEEEEecCCcccc
Q 040896 20 KKIVVFLDYDGTLSP 34 (288)
Q Consensus 20 ~~~li~~DlDGTL~~ 34 (288)
++..||+|+|||.+-
T Consensus 2 kk~vi~sDFDGTITl 16 (220)
T COG4359 2 KKPVIFSDFDGTITL 16 (220)
T ss_pred CceEEEecCCCceEe
Confidence 457899999999884
No 203
>PRK13223 phosphoglycolate phosphatase; Provisional
Probab=91.65 E-value=0.076 Score=46.65 Aligned_cols=29 Identities=28% Similarity=0.290 Sum_probs=20.8
Q ss_pred cEEEEEecCCccccCcCCCCCCCCCHHHHHHHHHHhhc
Q 040896 21 KIVVFLDYDGTLSPIVEDPDKAFMSDTMRMAVHEVAHF 58 (288)
Q Consensus 21 ~~li~~DlDGTL~~~~~~~~~~~i~~~~~~aL~~L~~~ 58 (288)
.++|+||+||||++. . +...+++.++.+.
T Consensus 13 ~k~viFDlDGTL~Ds-----~----~~~~~a~~~~~~~ 41 (272)
T PRK13223 13 PRLVMFDLDGTLVDS-----V----PDLAAAVDRMLLE 41 (272)
T ss_pred CCEEEEcCCCccccC-----H----HHHHHHHHHHHHH
Confidence 579999999999993 2 2356666665544
No 204
>PLN03243 haloacid dehalogenase-like hydrolase; Provisional
Probab=91.58 E-value=0.57 Score=40.87 Aligned_cols=66 Identities=12% Similarity=0.093 Sum_probs=48.5
Q ss_pred CHHHHHHHHHHhcCCCCCCCceeEEEcCCcccHHHHHHHHhcCCce-EEEEecCCC---CccceEEeCChhHHHHHHH
Q 040896 203 DKGRALEYLLDTFGFNNASDFLPLYIGDDKTDEDAFKVIRHMGRGY-PIIVSSVPR---ETKALYSLRDPDEVMSFLR 276 (288)
Q Consensus 203 sKg~al~~l~~~~~~~~~~~~~vv~~GDs~ND~~Ml~~~~~~~~g~-~v~v~na~~---~~~A~~~~~~~~~v~~~l~ 276 (288)
-+.......+++++++++ ++++|||+.+|+.+=+.+ |+ +|++.+... ...|++++.+..++..++-
T Consensus 166 P~Pe~~~~a~~~l~~~p~---~~l~IgDs~~Di~aA~~a-----G~~~i~v~g~~~~~~l~~ad~vi~~~~el~~~~~ 235 (260)
T PLN03243 166 PDPEMFMYAAERLGFIPE---RCIVFGNSNSSVEAAHDG-----CMKCVAVAGKHPVYELSAGDLVVRRLDDLSVVDL 235 (260)
T ss_pred CCHHHHHHHHHHhCCChH---HeEEEcCCHHHHHHHHHc-----CCEEEEEecCCchhhhccCCEEeCCHHHHHHHHH
Confidence 346788899999999887 999999999998877776 54 455543221 1468888898887655543
No 205
>PRK13226 phosphoglycolate phosphatase; Provisional
Probab=91.53 E-value=0.075 Score=45.30 Aligned_cols=29 Identities=28% Similarity=0.291 Sum_probs=20.2
Q ss_pred cEEEEEecCCccccCcCCCCCCCCCHHHHHHHHHHhhc
Q 040896 21 KIVVFLDYDGTLSPIVEDPDKAFMSDTMRMAVHEVAHF 58 (288)
Q Consensus 21 ~~li~~DlDGTL~~~~~~~~~~~i~~~~~~aL~~L~~~ 58 (288)
.+.++||+||||++. . +...++++.+.+.
T Consensus 12 ~k~viFD~DGTL~Ds-----~----~~~~~a~~~~~~~ 40 (229)
T PRK13226 12 PRAVLFDLDGTLLDS-----A----PDMLATVNAMLAA 40 (229)
T ss_pred CCEEEEcCcCccccC-----H----HHHHHHHHHHHHH
Confidence 478999999999993 2 2345566655544
No 206
>PLN03243 haloacid dehalogenase-like hydrolase; Provisional
Probab=91.44 E-value=0.16 Score=44.36 Aligned_cols=19 Identities=16% Similarity=0.263 Sum_probs=16.3
Q ss_pred hhcCCcEEEEEecCCcccc
Q 040896 16 AAKGKKIVVFLDYDGTLSP 34 (288)
Q Consensus 16 ~~~~~~~li~~DlDGTL~~ 34 (288)
......++|+|||||||++
T Consensus 19 ~~~~~~k~vIFDlDGTLvD 37 (260)
T PLN03243 19 RLGCGWLGVVLEWEGVIVE 37 (260)
T ss_pred HhcCCceEEEEeCCCceeC
Confidence 3456789999999999998
No 207
>PRK11587 putative phosphatase; Provisional
Probab=91.32 E-value=0.51 Score=39.75 Aligned_cols=29 Identities=24% Similarity=0.123 Sum_probs=19.9
Q ss_pred cEEEEEecCCccccCcCCCCCCCCCHHHHHHHHHHhhc
Q 040896 21 KIVVFLDYDGTLSPIVEDPDKAFMSDTMRMAVHEVAHF 58 (288)
Q Consensus 21 ~~li~~DlDGTL~~~~~~~~~~~i~~~~~~aL~~L~~~ 58 (288)
.+.++||+||||++. . +...++++++.+.
T Consensus 3 ~k~viFDlDGTL~Ds-----~----~~~~~a~~~~~~~ 31 (218)
T PRK11587 3 CKGFLFDLDGTLVDS-----L----PAVERAWSNWADR 31 (218)
T ss_pred CCEEEEcCCCCcCcC-----H----HHHHHHHHHHHHH
Confidence 578999999999993 2 2345555555544
No 208
>PLN02770 haloacid dehalogenase-like hydrolase family protein
Probab=91.12 E-value=0.48 Score=40.89 Aligned_cols=15 Identities=40% Similarity=0.510 Sum_probs=13.8
Q ss_pred CcEEEEEecCCcccc
Q 040896 20 KKIVVFLDYDGTLSP 34 (288)
Q Consensus 20 ~~~li~~DlDGTL~~ 34 (288)
+.+.|+||+||||++
T Consensus 21 ~~k~viFDlDGTLiD 35 (248)
T PLN02770 21 PLEAVLFDVDGTLCD 35 (248)
T ss_pred ccCEEEEcCCCccCc
Confidence 568999999999999
No 209
>COG0637 Predicted phosphatase/phosphohexomutase [General function prediction only]
Probab=90.99 E-value=0.11 Score=44.04 Aligned_cols=43 Identities=12% Similarity=0.014 Sum_probs=31.7
Q ss_pred HHHHHHHHhcCCCCCCCceeEEEcCCcccHHHHHHHHhcCCceEEEEecC
Q 040896 206 RALEYLLDTFGFNNASDFLPLYIGDDKTDEDAFKVIRHMGRGYPIIVSSV 255 (288)
Q Consensus 206 ~al~~l~~~~~~~~~~~~~vv~~GDs~ND~~Ml~~~~~~~~g~~v~v~na 255 (288)
..-..-++++|++++ +.++|.||.+.+..-..+. -..|.+.+.
T Consensus 146 d~yL~Aa~~Lgv~P~---~CvviEDs~~Gi~Aa~aAG----m~vv~v~~~ 188 (221)
T COG0637 146 DIYLLAAERLGVDPE---ECVVVEDSPAGIQAAKAAG----MRVVGVPAG 188 (221)
T ss_pred HHHHHHHHHcCCChH---HeEEEecchhHHHHHHHCC----CEEEEecCC
Confidence 344455566888888 9999999999999888882 345666653
No 210
>TIGR01545 YfhB_g-proteo haloacid dehalogenase superfamily, subfamily IF hydrolase, YfhB. The gene name comes from the E. coli gene. There is currently no information regarding the function of this gene.
Probab=90.82 E-value=0.22 Score=42.02 Aligned_cols=15 Identities=47% Similarity=0.837 Sum_probs=13.9
Q ss_pred CcEEEEEecCCcccc
Q 040896 20 KKIVVFLDYDGTLSP 34 (288)
Q Consensus 20 ~~~li~~DlDGTL~~ 34 (288)
.+++.+||+||||++
T Consensus 4 ~~~la~FDfDgTLt~ 18 (210)
T TIGR01545 4 AKRIIFFDLDGTLHQ 18 (210)
T ss_pred cCcEEEEcCCCCCcc
Confidence 579999999999998
No 211
>TIGR01990 bPGM beta-phosphoglucomutase. The enzyme from L. lactis has been extensively characterized including a remarkable crystal structure which traps the pentacoordinate transition state.
Probab=90.55 E-value=0.21 Score=40.64 Aligned_cols=36 Identities=14% Similarity=0.117 Sum_probs=31.3
Q ss_pred CHHHHHHHHHHhcCCCCCCCceeEEEcCCcccHHHHHHH
Q 040896 203 DKGRALEYLLDTFGFNNASDFLPLYIGDDKTDEDAFKVI 241 (288)
Q Consensus 203 sKg~al~~l~~~~~~~~~~~~~vv~~GDs~ND~~Ml~~~ 241 (288)
-+....+..+++++++++ ++++|||+.+|+.+-+.+
T Consensus 142 p~p~~~~~~~~~~~~~~~---~~v~vgD~~~di~aA~~a 177 (185)
T TIGR01990 142 PDPEIFLAAAEGLGVSPS---ECIGIEDAQAGIEAIKAA 177 (185)
T ss_pred CChHHHHHHHHHcCCCHH---HeEEEecCHHHHHHHHHc
Confidence 567788899999999877 999999999998877776
No 212
>PRK09449 dUMP phosphatase; Provisional
Probab=90.27 E-value=1.1 Score=37.64 Aligned_cols=65 Identities=17% Similarity=0.204 Sum_probs=46.6
Q ss_pred HHHHHHHHHHhcCCC-CCCCceeEEEcCCc-ccHHHHHHHHhcCCce-EEEEec-CCC---CccceEEeCChhHHHHHHH
Q 040896 204 KGRALEYLLDTFGFN-NASDFLPLYIGDDK-TDEDAFKVIRHMGRGY-PIIVSS-VPR---ETKALYSLRDPDEVMSFLR 276 (288)
Q Consensus 204 Kg~al~~l~~~~~~~-~~~~~~vv~~GDs~-ND~~Ml~~~~~~~~g~-~v~v~n-a~~---~~~A~~~~~~~~~v~~~l~ 276 (288)
+......+++.+|+. .+ +++++||+. +|+..=+.+ |+ ++.+.. +.. ...+++++++..++.++|+
T Consensus 152 ~p~~~~~~~~~~~~~~~~---~~~~vgD~~~~Di~~A~~a-----G~~~i~~~~~~~~~~~~~~~~~~i~~~~el~~~l~ 223 (224)
T PRK09449 152 DVAIFDYALEQMGNPDRS---RVLMVGDNLHSDILGGINA-----GIDTCWLNAHGREQPEGIAPTYQVSSLSELEQLLC 223 (224)
T ss_pred CHHHHHHHHHHcCCCCcc---cEEEEcCCcHHHHHHHHHC-----CCcEEEECCCCCCCCCCCCCeEEECCHHHHHHHHh
Confidence 456788889999874 35 899999997 798876666 55 455542 211 2357888899988887764
No 213
>PLN02779 haloacid dehalogenase-like hydrolase family protein
Probab=90.23 E-value=0.52 Score=41.73 Aligned_cols=24 Identities=25% Similarity=0.415 Sum_probs=18.5
Q ss_pred HHHHHhh-cCCcEEEEEecCCcccc
Q 040896 11 DRMVAAA-KGKKIVVFLDYDGTLSP 34 (288)
Q Consensus 11 ~~~~~~~-~~~~~li~~DlDGTL~~ 34 (288)
.++.++. ..+.++|+||+||||++
T Consensus 29 ~~~~~~~~~~~~k~VIFDlDGTLvD 53 (286)
T PLN02779 29 ARVASASASALPEALLFDCDGVLVE 53 (286)
T ss_pred hhhhhhccccCCcEEEEeCceeEEc
Confidence 3555664 34568999999999999
No 214
>PRK10563 6-phosphogluconate phosphatase; Provisional
Probab=90.22 E-value=0.18 Score=42.56 Aligned_cols=41 Identities=7% Similarity=0.064 Sum_probs=34.1
Q ss_pred CHHHHHHHHHHhcCCCCCCCceeEEEcCCcccHHHHHHHHhcCCceEEE
Q 040896 203 DKGRALEYLLDTFGFNNASDFLPLYIGDDKTDEDAFKVIRHMGRGYPII 251 (288)
Q Consensus 203 sKg~al~~l~~~~~~~~~~~~~vv~~GDs~ND~~Ml~~~~~~~~g~~v~ 251 (288)
-+.......++.++++++ +++++||+.+|+..=+.+ |..+.
T Consensus 143 P~p~~~~~a~~~~~~~p~---~~l~igDs~~di~aA~~a-----G~~~i 183 (221)
T PRK10563 143 PDPALMFHAAEAMNVNVE---NCILVDDSSAGAQSGIAA-----GMEVF 183 (221)
T ss_pred CChHHHHHHHHHcCCCHH---HeEEEeCcHhhHHHHHHC-----CCEEE
Confidence 467899999999999877 999999999998876666 66543
No 215
>TIGR01454 AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthesis related protein. The most closely related enzyme below the noise cutoff is IndB which is involved in the biosynthesis of Indigoidine in Pectobacterium (Erwinia) chrysanthemi, a gamma proteobacter. This enzyme is similarly related to PGP. In this case, too it is unclear what role would be be played by a PGPase activity.
Probab=90.13 E-value=0.1 Score=43.42 Aligned_cols=25 Identities=32% Similarity=0.307 Sum_probs=16.9
Q ss_pred EEEecCCccccCcCCCCCCCCCHHHHHHHHHHhh
Q 040896 24 VFLDYDGTLSPIVEDPDKAFMSDTMRMAVHEVAH 57 (288)
Q Consensus 24 i~~DlDGTL~~~~~~~~~~~i~~~~~~aL~~L~~ 57 (288)
++||+||||++. . +...+++++..+
T Consensus 1 iiFDlDGTL~Ds-----~----~~~~~~~~~~~~ 25 (205)
T TIGR01454 1 VVFDLDGVLVDS-----F----AVMREAFAIAYR 25 (205)
T ss_pred CeecCcCccccC-----H----HHHHHHHHHHHH
Confidence 589999999993 2 345556655543
No 216
>TIGR01549 HAD-SF-IA-v1 haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E. HAD subfamilies caused by an overly broad single model.
Probab=90.05 E-value=0.12 Score=40.88 Aligned_cols=35 Identities=17% Similarity=0.250 Sum_probs=28.9
Q ss_pred CHHHHHHHHHHhcCCCCCCCceeEEEcCCcccHHHHHHH
Q 040896 203 DKGRALEYLLDTFGFNNASDFLPLYIGDDKTDEDAFKVI 241 (288)
Q Consensus 203 sKg~al~~l~~~~~~~~~~~~~vv~~GDs~ND~~Ml~~~ 241 (288)
.+...+.++++++++++ +++++||+.+|+.+=+.+
T Consensus 119 p~~~~~~~~~~~~~~~~----~~l~iGDs~~Di~aa~~a 153 (154)
T TIGR01549 119 PEPEIFLAALESLGLPP----EVLHVGDNLNDIEGARNA 153 (154)
T ss_pred cCHHHHHHHHHHcCCCC----CEEEEeCCHHHHHHHHHc
Confidence 46788999999999863 799999999998765543
No 217
>TIGR01493 HAD-SF-IA-v2 Haloacid dehalogenase superfamily, subfamily IA, variant 2 with 3rd motif like haloacid dehalogenase. The Subfamily IA and IB capping domains are predicted by PSI-PRED to consist of an alpha helical bundle. Subfamily I encompasses such a wide region of sequence space (the sequences are highly divergent) that modelling it with a single alignment is impossible, resulting in an overly broad description which allows in many unrelated sequences. Subfamily IA and IB are separated based on an aparrent phylogenetic bifurcation. Subfamily IA is still too broad to model, but cannot be further subdivided into large chunks based on phylogenetic trees. Of the three motifs defining the HAD superfamily, the third has three variant forms : (1) hhhhsDxxx(x)D, (2) hhhhssxxx(x)D and (3) hhhhDDxxx(x)s where _s_ refers to a small amino acid and _h_ to a hydrophobic one. All three of these variants are found in subfamily IA. Individual models were made based on seeds exhibiting only o
Probab=89.99 E-value=0.22 Score=40.19 Aligned_cols=31 Identities=19% Similarity=0.169 Sum_probs=25.6
Q ss_pred HHHHHHHHHhcCCCCCCCceeEEEcCCcccHHHH
Q 040896 205 GRALEYLLDTFGFNNASDFLPLYIGDDKTDEDAF 238 (288)
Q Consensus 205 g~al~~l~~~~~~~~~~~~~vv~~GDs~ND~~Ml 238 (288)
...-+..++.+|++++ +++++||+..|+..=
T Consensus 142 p~~f~~~~~~~~~~p~---~~l~vgD~~~Di~~A 172 (175)
T TIGR01493 142 PVVYELVFDTVGLPPD---RVLMVAAHQWDLIGA 172 (175)
T ss_pred HHHHHHHHHHHCCCHH---HeEeEecChhhHHHH
Confidence 5556788888999887 999999999998753
No 218
>TIGR02254 YjjG/YfnB HAD superfamily (subfamily IA) hydrolase, TIGR02254. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549). Most likely, these enzymes are phosphatases.
Probab=89.92 E-value=0.84 Score=38.20 Aligned_cols=14 Identities=21% Similarity=0.325 Sum_probs=12.7
Q ss_pred cEEEEEecCCcccc
Q 040896 21 KIVVFLDYDGTLSP 34 (288)
Q Consensus 21 ~~li~~DlDGTL~~ 34 (288)
.++++||+||||++
T Consensus 1 ~k~viFD~DGTL~d 14 (224)
T TIGR02254 1 YKTLLFDLDDTILD 14 (224)
T ss_pred CCEEEEcCcCcccc
Confidence 37899999999999
No 219
>TIGR00213 GmhB_yaeD D,D-heptose 1,7-bisphosphate phosphatase. This family of proteins formerly designated yaeD resembles the histidinol phosphatase domain of the bifunctional protein HisB. The member from E. coli has been characterized as D,D-heptose 1,7-bisphosphate phosphatase, GmhB, involved in inner core LPS assembly (PubMed:11751812).
Probab=89.62 E-value=0.88 Score=36.99 Aligned_cols=48 Identities=23% Similarity=0.234 Sum_probs=35.8
Q ss_pred EEEEEecCCccccCcC---CCCCCCCCHHHHHHHHHHhhcC-CEEEEcCCCh
Q 040896 22 IVVFLDYDGTLSPIVE---DPDKAFMSDTMRMAVHEVAHFF-PTAIVSGRCL 69 (288)
Q Consensus 22 ~li~~DlDGTL~~~~~---~~~~~~i~~~~~~aL~~L~~~~-~v~i~TGR~~ 69 (288)
+++|+|.||||..... .+.+-.+.|.+.++|++|++.+ +++|+|..+.
T Consensus 2 ~~~~~D~Dgtl~~~~~~~~~~~~~~~~pgv~e~L~~Lk~~G~~l~i~TN~~~ 53 (176)
T TIGR00213 2 KAIFLDRDGTINIDHGYVHEIDNFEFIDGVIDALRELKKMGYALVLVTNQSG 53 (176)
T ss_pred CEEEEeCCCCEeCCCCCCCCHHHeEECCCHHHHHHHHHHCCCEEEEEeCCcc
Confidence 7899999999994211 1123345678999999999885 8898887664
No 220
>TIGR01449 PGP_bact 2-phosphoglycolate phosphatase, prokaryotic. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolase enzymes (pfam00702).
Probab=89.30 E-value=0.12 Score=43.10 Aligned_cols=11 Identities=55% Similarity=0.854 Sum_probs=10.2
Q ss_pred EEEecCCcccc
Q 040896 24 VFLDYDGTLSP 34 (288)
Q Consensus 24 i~~DlDGTL~~ 34 (288)
++||+||||++
T Consensus 1 viFD~DGTL~D 11 (213)
T TIGR01449 1 VLFDLDGTLVD 11 (213)
T ss_pred CeecCCCcccc
Confidence 58999999998
No 221
>KOG0206 consensus P-type ATPase [General function prediction only]
Probab=89.22 E-value=0.26 Score=51.23 Aligned_cols=33 Identities=18% Similarity=0.252 Sum_probs=25.1
Q ss_pred CHHHHHHHHHHhcCCCCCCCceeEEEcCCcccHHHHHHH
Q 040896 203 DKGRALEYLLDTFGFNNASDFLPLYIGDDKTDEDAFKVI 241 (288)
Q Consensus 203 sKg~al~~l~~~~~~~~~~~~~vv~~GDs~ND~~Ml~~~ 241 (288)
=|+.-++.+.+..+. .++++||+.||++|++.+
T Consensus 781 QKA~Vv~lVk~~~~~------~TLAIGDGANDVsMIQ~A 813 (1151)
T KOG0206|consen 781 QKALVVKLVKKGLKA------VTLAIGDGANDVSMIQEA 813 (1151)
T ss_pred HHHHHHHHHHhcCCc------eEEEeeCCCccchheeeC
Confidence 466666666433332 899999999999999988
No 222
>TIGR02253 CTE7 HAD superfamily (subfamily IA) hydrolase, TIGR02253. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549).
Probab=89.09 E-value=1 Score=37.77 Aligned_cols=33 Identities=21% Similarity=0.284 Sum_probs=20.7
Q ss_pred cEEEEEecCCccccCcCCCCCCCCCHHHHHHHHHHhhc
Q 040896 21 KIVVFLDYDGTLSPIVEDPDKAFMSDTMRMAVHEVAHF 58 (288)
Q Consensus 21 ~~li~~DlDGTL~~~~~~~~~~~i~~~~~~aL~~L~~~ 58 (288)
.++++||+||||++. ...+......+.+.+.+.
T Consensus 2 ~~~viFDlDGTL~ds-----~~~~~~~~~~~~~~~~~~ 34 (221)
T TIGR02253 2 IKAIFFDLDDTLIDT-----SGLAEKARRNAIEVLIEA 34 (221)
T ss_pred ceEEEEeCCCCCcCC-----CCccCHHHHHHHHHHHHC
Confidence 478999999999993 333333333344445444
No 223
>PRK09449 dUMP phosphatase; Provisional
Probab=88.79 E-value=0.22 Score=41.99 Aligned_cols=14 Identities=29% Similarity=0.183 Sum_probs=12.9
Q ss_pred cEEEEEecCCcccc
Q 040896 21 KIVVFLDYDGTLSP 34 (288)
Q Consensus 21 ~~li~~DlDGTL~~ 34 (288)
.+.|+||+||||++
T Consensus 3 ~k~iiFDlDGTLid 16 (224)
T PRK09449 3 YDWILFDADETLFH 16 (224)
T ss_pred ccEEEEcCCCchhc
Confidence 57899999999997
No 224
>PRK06698 bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase/phosphatase; Validated
Probab=88.73 E-value=1.3 Score=41.93 Aligned_cols=66 Identities=20% Similarity=0.187 Sum_probs=48.6
Q ss_pred CHHHHHHHHHHhcCCCCCCCceeEEEcCCcccHHHHHHHHhcCCce-EEEEecCC--C--CccceEEeCChhHHHHHHHH
Q 040896 203 DKGRALEYLLDTFGFNNASDFLPLYIGDDKTDEDAFKVIRHMGRGY-PIIVSSVP--R--ETKALYSLRDPDEVMSFLRR 277 (288)
Q Consensus 203 sKg~al~~l~~~~~~~~~~~~~vv~~GDs~ND~~Ml~~~~~~~~g~-~v~v~na~--~--~~~A~~~~~~~~~v~~~l~~ 277 (288)
.|...+...++.++. + ++++|||+.+|+.+-+.+ |. ++.+.... . ...+++++++..++..++..
T Consensus 386 ~kP~~~~~al~~l~~--~---~~v~VGDs~~Di~aAk~A-----G~~~I~v~~~~~~~~~~~~~d~~i~~l~el~~~l~~ 455 (459)
T PRK06698 386 NKSDLVKSILNKYDI--K---EAAVVGDRLSDINAAKDN-----GLIAIGCNFDFAQEDELAQADIVIDDLLELKGILST 455 (459)
T ss_pred CCcHHHHHHHHhcCc--c---eEEEEeCCHHHHHHHHHC-----CCeEEEEeCCCCcccccCCCCEEeCCHHHHHHHHHH
Confidence 456677788877654 4 999999999999988887 54 56664432 1 24688999999988887755
Q ss_pred H
Q 040896 278 L 278 (288)
Q Consensus 278 ~ 278 (288)
+
T Consensus 456 ~ 456 (459)
T PRK06698 456 V 456 (459)
T ss_pred H
Confidence 4
No 225
>COG4087 Soluble P-type ATPase [General function prediction only]
Probab=88.68 E-value=0.62 Score=35.96 Aligned_cols=47 Identities=11% Similarity=0.048 Sum_probs=40.6
Q ss_pred EEEecCCccccCcCCCCCCCCCHHHHHHHHHHhhcCCEEEEcCCChhhHhhhc
Q 040896 24 VFLDYDGTLSPIVEDPDKAFMSDTMRMAVHEVAHFFPTAIVSGRCLDKVSRFV 76 (288)
Q Consensus 24 i~~DlDGTL~~~~~~~~~~~i~~~~~~aL~~L~~~~~v~i~TGR~~~~l~~~~ 76 (288)
.+-++++|+.. .+.+-++..+.|++|++...|+|+||-....+.+..
T Consensus 17 ~~~~v~~tiat------gGklf~ev~e~iqeL~d~V~i~IASgDr~gsl~~la 63 (152)
T COG4087 17 KAGKVLYTIAT------GGKLFSEVSETIQELHDMVDIYIASGDRKGSLVQLA 63 (152)
T ss_pred ecceEEEEEcc------CcEEcHhhHHHHHHHHHhheEEEecCCcchHHHHHH
Confidence 45688999887 567888999999999998999999999998888764
No 226
>PRK06698 bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase/phosphatase; Validated
Probab=88.61 E-value=0.21 Score=47.29 Aligned_cols=29 Identities=17% Similarity=0.308 Sum_probs=19.3
Q ss_pred EEEEEecCCccccCcCCCCCCCCCHHHHHHHHHH
Q 040896 22 IVVFLDYDGTLSPIVEDPDKAFMSDTMRMAVHEV 55 (288)
Q Consensus 22 ~li~~DlDGTL~~~~~~~~~~~i~~~~~~aL~~L 55 (288)
+.++||+||||++ +...+.....++++++
T Consensus 242 k~vIFDlDGTLiD-----s~~~~~~a~~~~~~~~ 270 (459)
T PRK06698 242 QALIFDMDGTLFQ-----TDKILELSLDDTFDHL 270 (459)
T ss_pred hheeEccCCceec-----chhHHHHHHHHHHHHH
Confidence 7899999999999 3333344444555444
No 227
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=88.38 E-value=0.25 Score=40.81 Aligned_cols=35 Identities=14% Similarity=0.225 Sum_probs=30.2
Q ss_pred HHHHHHHHHHhcCCCCCCCceeEEEcCCcccHHHHHHH
Q 040896 204 KGRALEYLLDTFGFNNASDFLPLYIGDDKTDEDAFKVI 241 (288)
Q Consensus 204 Kg~al~~l~~~~~~~~~~~~~vv~~GDs~ND~~Ml~~~ 241 (288)
+....+.++++++++++ ++++|||+.+|+..-+.+
T Consensus 150 ~~~~~~~~~~~~~~~p~---~~~~vgD~~~Di~~A~~~ 184 (198)
T TIGR01428 150 APQVYQLALEALGVPPD---EVLFVASNPWDLGGAKKF 184 (198)
T ss_pred CHHHHHHHHHHhCCChh---hEEEEeCCHHHHHHHHHC
Confidence 46778899999999887 999999999998876666
No 228
>KOG2116 consensus Protein involved in plasmid maintenance/nuclear protein involved in lipid metabolism [Cell motility; Lipid transport and metabolism]
Probab=87.37 E-value=0.75 Score=44.59 Aligned_cols=75 Identities=13% Similarity=0.151 Sum_probs=48.8
Q ss_pred CcEEEEEecCCccccCcCCCCCCCC---------CHHHHHHHHHHhhcC-CEEEEcCCChhhH---hhhcC-CCCeEEEc
Q 040896 20 KKIVVFLDYDGTLSPIVEDPDKAFM---------SDTMRMAVHEVAHFF-PTAIVSGRCLDKV---SRFVQ-LKNVVYAG 85 (288)
Q Consensus 20 ~~~li~~DlDGTL~~~~~~~~~~~i---------~~~~~~aL~~L~~~~-~v~i~TGR~~~~l---~~~~~-~~~~~~i~ 85 (288)
..++|++|+|||++..+. -+.+ +...-+...++.+++ +++.+|.|+.... +.+|. +...+...
T Consensus 529 n~kIVISDIDGTITKSDv---LGh~lp~iGkDWTh~GVAkLyt~Ik~NGYk~lyLSARaIgQA~~TR~yL~nv~QdG~~L 605 (738)
T KOG2116|consen 529 NDKIVISDIDGTITKSDV---LGHVLPMIGKDWTHTGVAKLYTKIKENGYKILYLSARAIGQADSTRQYLKNVEQDGKKL 605 (738)
T ss_pred CCcEEEecCCCceEhhhh---hhhhhhhhcCcchhhhHHHHHHHHHhCCeeEEEEehhhhhhhHHHHHHHHHHhhcCccC
Confidence 468999999999997331 1111 345567777888887 8999999998643 33442 33333444
Q ss_pred cCceeEeCCCCC
Q 040896 86 SHGMDISTPAGS 97 (288)
Q Consensus 86 ~nGa~i~~~~~~ 97 (288)
-.|=+|..|++.
T Consensus 606 PdGPViLSPd~l 617 (738)
T KOG2116|consen 606 PDGPVILSPDSL 617 (738)
T ss_pred CCCCEEeCCCcc
Confidence 456666666554
No 229
>TIGR01261 hisB_Nterm histidinol-phosphatase. This model describes histidinol phosphatase. All known examples in the scope of this model are bifunctional proteins with a histidinol phosphatase domain followed by an imidazoleglycerol-phosphate dehydratase domain. These enzymatic domains catalyze the ninth and seventh steps, respectively, of histidine biosynthesis.
Probab=87.34 E-value=0.57 Score=37.75 Aligned_cols=47 Identities=19% Similarity=0.174 Sum_probs=33.3
Q ss_pred EEEEEecCCccccCcC------CCCCCCCCHHHHHHHHHHhhcC-CEEEEcCCC
Q 040896 22 IVVFLDYDGTLSPIVE------DPDKAFMSDTMRMAVHEVAHFF-PTAIVSGRC 68 (288)
Q Consensus 22 ~li~~DlDGTL~~~~~------~~~~~~i~~~~~~aL~~L~~~~-~v~i~TGR~ 68 (288)
+++|||.||||..... .+..-.+-+.+.++|++|++++ +++|+|-.+
T Consensus 2 ~~~~~d~dg~l~~~~~~~~~~~~~~~~~~~pgv~e~L~~L~~~g~~l~IvSN~~ 55 (161)
T TIGR01261 2 KILFIDRDGTLIEEPPSDFQVDALEKLRFEKGVIPALLKLKKAGYKFVMVTNQD 55 (161)
T ss_pred CEEEEeCCCCccccCCCccccCCHHHeeECCCHHHHHHHHHHCCCeEEEEeCCc
Confidence 7899999999997321 0112234467899999999885 788887653
No 230
>PLN02645 phosphoglycolate phosphatase
Probab=87.06 E-value=2.5 Score=37.88 Aligned_cols=66 Identities=17% Similarity=0.189 Sum_probs=48.3
Q ss_pred CHHHHHHHHHHhcCCCCCCCceeEEEcCCc-ccHHHHHHHHhcCCc-eEEEEecCC--CC--------ccceEEeCChhH
Q 040896 203 DKGRALEYLLDTFGFNNASDFLPLYIGDDK-TDEDAFKVIRHMGRG-YPIIVSSVP--RE--------TKALYSLRDPDE 270 (288)
Q Consensus 203 sKg~al~~l~~~~~~~~~~~~~vv~~GDs~-ND~~Ml~~~~~~~~g-~~v~v~na~--~~--------~~A~~~~~~~~~ 270 (288)
-+...++.++++++++.+ +++++||+. +|+.+=+.+ | .++.|..+. .+ ..+++++++..+
T Consensus 231 P~p~~~~~a~~~~~~~~~---~~~~VGD~~~~Di~~A~~a-----G~~~ilV~~G~~~~~~~~~~~~~~~pd~~~~~~~~ 302 (311)
T PLN02645 231 PSTFMMDYLANKFGIEKS---QICMVGDRLDTDILFGQNG-----GCKTLLVLSGVTSESMLLSPENKIQPDFYTSKISD 302 (311)
T ss_pred ChHHHHHHHHHHcCCCcc---cEEEEcCCcHHHHHHHHHc-----CCCEEEEcCCCCCHHHHHhccCCCCCCEEECCHHH
Confidence 345577788888999887 999999996 999887777 4 356664432 11 246788888888
Q ss_pred HHHHHH
Q 040896 271 VMSFLR 276 (288)
Q Consensus 271 v~~~l~ 276 (288)
+.++++
T Consensus 303 l~~~~~ 308 (311)
T PLN02645 303 FLTLKA 308 (311)
T ss_pred HHHHhh
Confidence 877665
No 231
>PLN02177 glycerol-3-phosphate acyltransferase
Probab=87.00 E-value=0.68 Score=44.28 Aligned_cols=40 Identities=28% Similarity=0.292 Sum_probs=30.0
Q ss_pred CHHHHHHHHHHhcCCCCCCCceeEEEcCCcccHHHHHHHHhcCCceEEEEec
Q 040896 203 DKGRALEYLLDTFGFNNASDFLPLYIGDDKTDEDAFKVIRHMGRGYPIIVSS 254 (288)
Q Consensus 203 sKg~al~~l~~~~~~~~~~~~~vv~~GDs~ND~~Ml~~~~~~~~g~~v~v~n 254 (288)
.|-.+++ +.++.+.. . ++.|||.||.+||+.+ +.+++|..
T Consensus 176 ~Kv~rl~---~~~g~~~~---~-~aYgDS~sD~plL~~a-----~e~y~V~~ 215 (497)
T PLN02177 176 HKRDAVL---KEFGDALP---D-LGLGDRETDHDFMSIC-----KEGYMVPR 215 (497)
T ss_pred HHHHHHH---HHhCCCCc---e-EEEECCccHHHHHHhC-----CccEEeCC
Confidence 3666666 55564432 4 8999999999999999 56777766
No 232
>TIGR01662 HAD-SF-IIIA HAD-superfamily hydrolase, subfamily IIIA. In the case of histidinol phosphatase and PNK-3'-phosphatase, this model represents a domain of a bifunctional system. In the histidinol phosphatase HisB, a C-terminal domain is an imidazoleglycerol-phosphate dehydratase which catalyzes a related step in histidine biosynthesis. In PNK-3'-phosphatase, N- and C-terminal domains constitute the polynucleotide kinase and DNA-binding components of the enzyme.
Probab=86.78 E-value=1.2 Score=34.04 Aligned_cols=36 Identities=31% Similarity=0.347 Sum_probs=31.7
Q ss_pred CHHHHHHHHHHhc-CCCCCCCceeEEEcC-CcccHHHHHHH
Q 040896 203 DKGRALEYLLDTF-GFNNASDFLPLYIGD-DKTDEDAFKVI 241 (288)
Q Consensus 203 sKg~al~~l~~~~-~~~~~~~~~vv~~GD-s~ND~~Ml~~~ 241 (288)
.|...++.+++.+ +++++ +++++|| +.+|+.+-+.+
T Consensus 86 P~~~~~~~~~~~~~~~~~~---~~v~IGD~~~~Di~~A~~~ 123 (132)
T TIGR01662 86 PKPGMFLEALKRFNEIDPE---ESVYVGDQDLTDLQAAKRA 123 (132)
T ss_pred CChHHHHHHHHHcCCCChh---heEEEcCCCcccHHHHHHC
Confidence 5778999999999 59887 9999999 79999887776
No 233
>KOG1618 consensus Predicted phosphatase [General function prediction only]
Probab=85.94 E-value=1.1 Score=39.83 Aligned_cols=51 Identities=12% Similarity=0.092 Sum_probs=36.6
Q ss_pred hHHHHHHhh----cCCcEEEEEecCCccccCcCCCCCCCCCHHHHHHHHHHhhc-C----CEEEEc
Q 040896 9 TFDRMVAAA----KGKKIVVFLDYDGTLSPIVEDPDKAFMSDTMRMAVHEVAHF-F----PTAIVS 65 (288)
Q Consensus 9 ~~~~~~~~~----~~~~~li~~DlDGTL~~~~~~~~~~~i~~~~~~aL~~L~~~-~----~v~i~T 65 (288)
.|-++.... +.+.-.|+||+||.|+. .+++-+...+||+.|.++ + ++++.|
T Consensus 19 ~~~kf~~~~s~~ss~~~fgfafDIDGVL~R------G~~~i~~~~~Alr~L~~~~g~lkIP~vfLT 78 (389)
T KOG1618|consen 19 PMRKFISEISFESSPPTFGFAFDIDGVLFR------GHRPIPGALKALRRLVDNQGQLKIPFVFLT 78 (389)
T ss_pred chhhhhcccCCCCCCCceeEEEecccEEEe------cCCCCcchHHHHHHHHhcCCCeeccEEEEe
Confidence 345555553 34668899999999998 345667889999999877 2 556655
No 234
>TIGR01990 bPGM beta-phosphoglucomutase. The enzyme from L. lactis has been extensively characterized including a remarkable crystal structure which traps the pentacoordinate transition state.
Probab=85.48 E-value=0.74 Score=37.32 Aligned_cols=27 Identities=22% Similarity=0.349 Sum_probs=19.4
Q ss_pred EEEEecCCccccCcCCCCCCCCCHHHHHHHHHHhhc
Q 040896 23 VVFLDYDGTLSPIVEDPDKAFMSDTMRMAVHEVAHF 58 (288)
Q Consensus 23 li~~DlDGTL~~~~~~~~~~~i~~~~~~aL~~L~~~ 58 (288)
+++||+||||++. .+...++++++.+.
T Consensus 1 ~iiFD~DGTL~ds---------~~~~~~~~~~~~~~ 27 (185)
T TIGR01990 1 AVIFDLDGVITDT---------AEYHYLAWKALADE 27 (185)
T ss_pred CeEEcCCCccccC---------hHHHHHHHHHHHHH
Confidence 4799999999993 23456666666655
No 235
>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458. This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published.
Probab=85.39 E-value=3.3 Score=35.99 Aligned_cols=46 Identities=20% Similarity=0.113 Sum_probs=39.0
Q ss_pred EEEEEecCCccccCcCCCCCC---CCCHHHHHHHHHHhhcC-CEEEEcCCChhhH
Q 040896 22 IVVFLDYDGTLSPIVEDPDKA---FMSDTMRMAVHEVAHFF-PTAIVSGRCLDKV 72 (288)
Q Consensus 22 ~li~~DlDGTL~~~~~~~~~~---~i~~~~~~aL~~L~~~~-~v~i~TGR~~~~l 72 (288)
++|+||+||||++. .. .+.+.+.++|++|++.+ +++++|||+....
T Consensus 2 k~i~~D~DGtl~~~-----~~~~~~~~~~a~~al~~l~~~G~~~~~~Tn~~~~~~ 51 (257)
T TIGR01458 2 KGVLLDISGVLYIS-----DAKSGVAVPGSQEAVKRLRGASVKVRFVTNTTKESK 51 (257)
T ss_pred CEEEEeCCCeEEeC-----CCcccCcCCCHHHHHHHHHHCCCeEEEEECCCCCCH
Confidence 68999999999983 33 27789999999999995 8999999888753
No 236
>TIGR02247 HAD-1A3-hyp Epoxide hydrolase N-terminal domain-like phosphatase. These appear to be members of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases by general homology and the conservation of all of the recognized catalytic motifs (although the first motif is unusual in the replacement of the more common aspartate with glycine...). The variable domain is found in between motifs 1 and 2, indicating membership in subfamily I and phylogeny and prediction of the alpha helical nature of the variable domain (by PSI-PRED) indicate membership in subfamily IA.
Probab=85.33 E-value=0.48 Score=39.56 Aligned_cols=34 Identities=12% Similarity=0.258 Sum_probs=29.2
Q ss_pred HHHHHHHHHhcCCCCCCCceeEEEcCCcccHHHHHHH
Q 040896 205 GRALEYLLDTFGFNNASDFLPLYIGDDKTDEDAFKVI 241 (288)
Q Consensus 205 g~al~~l~~~~~~~~~~~~~vv~~GDs~ND~~Ml~~~ 241 (288)
....+.+++++|++++ ++++|||+..|+.+=+.+
T Consensus 155 p~~~~~~~~~~g~~~~---~~l~i~D~~~di~aA~~a 188 (211)
T TIGR02247 155 PRIYQLMLERLGVAPE---ECVFLDDLGSNLKPAAAL 188 (211)
T ss_pred HHHHHHHHHHcCCCHH---HeEEEcCCHHHHHHHHHc
Confidence 5578888999999887 999999999998877766
No 237
>PRK08238 hypothetical protein; Validated
Probab=85.25 E-value=1 Score=42.86 Aligned_cols=43 Identities=26% Similarity=0.322 Sum_probs=31.4
Q ss_pred CCCHHHHHHHHHHhcCCCCCCCceeEEEcCCcccHHHHHHHHhcCCceEEEEecCC
Q 040896 201 DWDKGRALEYLLDTFGFNNASDFLPLYIGDDKTDEDAFKVIRHMGRGYPIIVSSVP 256 (288)
Q Consensus 201 ~~sKg~al~~l~~~~~~~~~~~~~vv~~GDs~ND~~Ml~~~~~~~~g~~v~v~na~ 256 (288)
+..|...++ +.++.. .+.++||+.+|++|++.+ +.+++|++..
T Consensus 126 g~~K~~~l~---~~l~~~-----~~~yvGDS~~Dlp~~~~A-----~~av~Vn~~~ 168 (479)
T PRK08238 126 GAAKAAALV---EAFGER-----GFDYAGNSAADLPVWAAA-----RRAIVVGASP 168 (479)
T ss_pred CchHHHHHH---HHhCcc-----CeeEecCCHHHHHHHHhC-----CCeEEECCCH
Confidence 345755544 555532 567889999999999999 6888887654
No 238
>COG4996 Predicted phosphatase [General function prediction only]
Probab=84.30 E-value=1.2 Score=34.33 Aligned_cols=14 Identities=29% Similarity=0.223 Sum_probs=12.3
Q ss_pred EEEEEecCCccccC
Q 040896 22 IVVFLDYDGTLSPI 35 (288)
Q Consensus 22 ~li~~DlDGTL~~~ 35 (288)
++|+||.||||.++
T Consensus 1 ~~i~~d~d~t~wdh 14 (164)
T COG4996 1 RAIVFDADKTLWDH 14 (164)
T ss_pred CcEEEeCCCccccc
Confidence 47999999999984
No 239
>KOG3120 consensus Predicted haloacid dehalogenase-like hydrolase [General function prediction only]
Probab=84.22 E-value=0.9 Score=38.33 Aligned_cols=87 Identities=17% Similarity=0.188 Sum_probs=54.9
Q ss_pred CceEEEEeCCCCCCHHHHHHHHHHhc---CCCCCCCceeEEEcCCcccHHHHHHHHhcCCceEEEEec--------CCC-
Q 040896 190 GKKVMEIRPCIDWDKGRALEYLLDTF---GFNNASDFLPLYIGDDKTDEDAFKVIRHMGRGYPIIVSS--------VPR- 257 (288)
Q Consensus 190 ~~~~ieI~~~~~~sKg~al~~l~~~~---~~~~~~~~~vv~~GDs~ND~~Ml~~~~~~~~g~~v~v~n--------a~~- 257 (288)
........|+ +.=||.-+..+.... |+..+ +++++||+.||+--....+. ..|++.-.| +.+
T Consensus 151 ~~hsC~~CPs-NmCKg~Vl~~~~~s~~~~gv~ye---r~iYvGDG~nD~CP~l~Lr~--~D~ampRkgfpl~k~~~~~p~ 224 (256)
T KOG3120|consen 151 TQHSCNLCPS-NMCKGLVLDELVASQLKDGVRYE---RLIYVGDGANDFCPVLRLRA--CDVAMPRKGFPLWKLISANPM 224 (256)
T ss_pred CCCccCcCch-hhhhhHHHHHHHHHHhhcCCcee---eEEEEcCCCCCcCcchhccc--CceecccCCCchHhhhhcCcc
Confidence 3456677899 999999999998765 55555 99999999999854333321 122222121 111
Q ss_pred CccceEEe-CChhHHHHHHHHHHHHh
Q 040896 258 ETKALYSL-RDPDEVMSFLRRLARWK 282 (288)
Q Consensus 258 ~~~A~~~~-~~~~~v~~~l~~~~~~~ 282 (288)
.-+|..+. ++..++.+.|.+++..-
T Consensus 225 ~~kasV~~W~sg~d~~~~L~~lik~~ 250 (256)
T KOG3120|consen 225 LLKASVLEWSSGEDLERILQQLIKTI 250 (256)
T ss_pred eeeeeEEecccHHHHHHHHHHHHHHh
Confidence 12455443 46778888887776543
No 240
>KOG0203 consensus Na+/K+ ATPase, alpha subunit [Inorganic ion transport and metabolism]
Probab=84.17 E-value=2.5 Score=42.46 Aligned_cols=37 Identities=19% Similarity=0.159 Sum_probs=30.1
Q ss_pred eeEEEcCCcccHHHHHHHHhcCCceEEEEecCCC---CccceEEe
Q 040896 224 LPLYIGDDKTDEDAFKVIRHMGRGYPIIVSSVPR---ETKALYSL 265 (288)
Q Consensus 224 ~vv~~GDs~ND~~Ml~~~~~~~~g~~v~v~na~~---~~~A~~~~ 265 (288)
-|.+-||+.||-|.|+.+ ..|||||=+.. +.+|+.++
T Consensus 707 iVaVTGDGVNDsPALKKA-----DIGVAMGiaGSDvsKqAADmIL 746 (1019)
T KOG0203|consen 707 IVAVTGDGVNDSPALKKA-----DIGVAMGIAGSDVSKQAADMIL 746 (1019)
T ss_pred EEEEeCCCcCCChhhccc-----ccceeeccccchHHHhhcceEE
Confidence 577889999999999999 59999976632 56788774
No 241
>TIGR01656 Histidinol-ppas histidinol-phosphate phosphatase family domain. This domain is a member of the haloacid-dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. This superfamily is distinguished by the presence of three motifs: an N-terminal motif containing the nucleophilic aspartate, a central motif containing an conserved serine or threonine, and a C-terminal motif containing a conserved lysine (or arginine) and conserved aspartates. More specifically, the domian modelled here is a member of subfamily III of the HAD-superfamily by virtue of lacking a "capping" domain in either of the two common positions, between motifs 1 and 2, or between motifs 2 and 3.
Probab=84.04 E-value=1.1 Score=35.28 Aligned_cols=36 Identities=22% Similarity=0.245 Sum_probs=30.8
Q ss_pred CHHHHHHHHHHhcCCCCCCCceeEEEcCCcccHHHHHHH
Q 040896 203 DKGRALEYLLDTFGFNNASDFLPLYIGDDKTDEDAFKVI 241 (288)
Q Consensus 203 sKg~al~~l~~~~~~~~~~~~~vv~~GDs~ND~~Ml~~~ 241 (288)
-|...++.+++.++++++ +++++||+..|+.+-+.+
T Consensus 102 P~~~~~~~~~~~~~~~~~---e~i~IGDs~~Di~~A~~~ 137 (147)
T TIGR01656 102 PKPGLILEALKRLGVDAS---RSLVVGDRLRDLQAARNA 137 (147)
T ss_pred CCHHHHHHHHHHcCCChH---HEEEEcCCHHHHHHHHHC
Confidence 567789999999999887 999999999998766665
No 242
>PHA02597 30.2 hypothetical protein; Provisional
Probab=83.76 E-value=1.9 Score=35.50 Aligned_cols=14 Identities=36% Similarity=0.515 Sum_probs=12.8
Q ss_pred cEEEEEecCCcccc
Q 040896 21 KIVVFLDYDGTLSP 34 (288)
Q Consensus 21 ~~li~~DlDGTL~~ 34 (288)
.++++||+||||++
T Consensus 2 ~k~viFDlDGTLiD 15 (197)
T PHA02597 2 KPTILTDVDGVLLS 15 (197)
T ss_pred CcEEEEecCCceEc
Confidence 47899999999999
No 243
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=83.42 E-value=0.52 Score=39.04 Aligned_cols=49 Identities=10% Similarity=0.172 Sum_probs=28.8
Q ss_pred CHHHHHHHHHHhcCCCCCCCceeEEEcC--CcccHHHHHHHHhcC--CceEEEEecC
Q 040896 203 DKGRALEYLLDTFGFNNASDFLPLYIGD--DKTDEDAFKVIRHMG--RGYPIIVSSV 255 (288)
Q Consensus 203 sKg~al~~l~~~~~~~~~~~~~vv~~GD--s~ND~~Ml~~~~~~~--~g~~v~v~na 255 (288)
+....+..+++.+|+.. .+++.+. +.++-.+++.+.+++ .+..+++|.+
T Consensus 152 D~~~~a~~~~~~lgi~~----~~v~a~~~~kP~~k~~~~~i~~l~~~~~~v~~vGDg 204 (215)
T PF00702_consen 152 DNESTASAIAKQLGIFD----SIVFARVIGKPEPKIFLRIIKELQVKPGEVAMVGDG 204 (215)
T ss_dssp SEHHHHHHHHHHTTSCS----EEEEESHETTTHHHHHHHHHHHHTCTGGGEEEEESS
T ss_pred ccccccccccccccccc----ccccccccccccchhHHHHHHHHhcCCCEEEEEccC
Confidence 44556677788899952 4455555 666664555555543 1345666654
No 244
>KOG3109 consensus Haloacid dehalogenase-like hydrolase [General function prediction only]
Probab=83.25 E-value=1.3 Score=37.43 Aligned_cols=55 Identities=16% Similarity=0.252 Sum_probs=36.2
Q ss_pred HHHHHHHHHhcCCC-CCCCceeEEEcCCcccHHHHHHHHhcCCceEEEEecCCCCccceEEeC
Q 040896 205 GRALEYLLDTFGFN-NASDFLPLYIGDDKTDEDAFKVIRHMGRGYPIIVSSVPRETKALYSLR 266 (288)
Q Consensus 205 g~al~~l~~~~~~~-~~~~~~vv~~GDs~ND~~Ml~~~~~~~~g~~v~v~na~~~~~A~~~~~ 266 (288)
-.|-++..+..|+. +. ++++|-||.+-+.-=+.+ | -.++.++-.....-+++++.
T Consensus 163 ~~afE~a~k~agi~~p~---~t~FfDDS~~NI~~ak~v---G-l~tvlv~~~~~~~~~d~~l~ 218 (244)
T KOG3109|consen 163 EEAFEKAMKVAGIDSPR---NTYFFDDSERNIQTAKEV---G-LKTVLVGREHKIKGVDYALE 218 (244)
T ss_pred HHHHHHHHHHhCCCCcC---ceEEEcCchhhHHHHHhc---c-ceeEEEEeeecccchHHHHH
Confidence 45778888888987 56 999999998876644444 2 24677775543334444443
No 245
>PLN02940 riboflavin kinase
Probab=82.76 E-value=2.3 Score=39.28 Aligned_cols=61 Identities=18% Similarity=0.086 Sum_probs=45.0
Q ss_pred CHHHHHHHHHHhcCCCCCCCceeEEEcCCcccHHHHHHHHhcCCce-EEEEecCCC----CccceEEeCChhHH
Q 040896 203 DKGRALEYLLDTFGFNNASDFLPLYIGDDKTDEDAFKVIRHMGRGY-PIIVSSVPR----ETKALYSLRDPDEV 271 (288)
Q Consensus 203 sKg~al~~l~~~~~~~~~~~~~vv~~GDs~ND~~Ml~~~~~~~~g~-~v~v~na~~----~~~A~~~~~~~~~v 271 (288)
-+.......++.++++++ ++++|||+.+|+.+-+.+ |. .+.+..... ..-+++++++..++
T Consensus 151 P~p~~~~~a~~~lgv~p~---~~l~VGDs~~Di~aA~~a-----Gi~~I~v~~g~~~~~~~~~ad~~i~sl~el 216 (382)
T PLN02940 151 PSPDIFLEAAKRLNVEPS---NCLVIEDSLPGVMAGKAA-----GMEVIAVPSIPKQTHLYSSADEVINSLLDL 216 (382)
T ss_pred CCHHHHHHHHHHcCCChh---HEEEEeCCHHHHHHHHHc-----CCEEEEECCCCcchhhccCccEEeCCHhHc
Confidence 457889999999999988 999999999998877776 54 455654321 23566777776654
No 246
>COG1011 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=82.47 E-value=0.81 Score=38.46 Aligned_cols=63 Identities=19% Similarity=0.406 Sum_probs=41.8
Q ss_pred HHHHHHHHhcCCCCCCCceeEEEcCC-cccHHHHHHHHhcCCce-EEEEecCCC-----CccceEEeCChhHHHHHHH
Q 040896 206 RALEYLLDTFGFNNASDFLPLYIGDD-KTDEDAFKVIRHMGRGY-PIIVSSVPR-----ETKALYSLRDPDEVMSFLR 276 (288)
Q Consensus 206 ~al~~l~~~~~~~~~~~~~vv~~GDs-~ND~~Ml~~~~~~~~g~-~v~v~na~~-----~~~A~~~~~~~~~v~~~l~ 276 (288)
..=+.+++++|++++ +++++||+ .||+..-..+ |+ +|.+..... ....++.+.+..++...++
T Consensus 158 ~~f~~~~~~~g~~p~---~~l~VgD~~~~di~gA~~~-----G~~~vwi~~~~~~~~~~~~~~~~~i~~l~~l~~~~~ 227 (229)
T COG1011 158 EIFEYALEKLGVPPE---EALFVGDSLENDILGARAL-----GMKTVWINRGGKPLPDALEAPDYEISSLAELLDLLE 227 (229)
T ss_pred HHHHHHHHHcCCCcc---eEEEECCChhhhhHHHHhc-----CcEEEEECCCCCCCCCCccCCceEEcCHHHHHHHHh
Confidence 456778888999887 99999999 7775544444 44 454443321 1345666677777776664
No 247
>COG1011 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=81.36 E-value=6.1 Score=33.02 Aligned_cols=48 Identities=15% Similarity=0.032 Sum_probs=27.9
Q ss_pred HHHHHHHhcCCCCCCCceeEEEcCCc---ccHHHHHHHHhcC---CceEEEEecC
Q 040896 207 ALEYLLDTFGFNNASDFLPLYIGDDK---TDEDAFKVIRHMG---RGYPIIVSSV 255 (288)
Q Consensus 207 al~~l~~~~~~~~~~~~~vv~~GDs~---ND~~Ml~~~~~~~---~g~~v~v~na 255 (288)
..+..++.+|+.. .++.++..++-. =|-.+|+.+-+.- ..-++.||..
T Consensus 127 ~~~~~l~~~gl~~-~Fd~v~~s~~~g~~KP~~~~f~~~~~~~g~~p~~~l~VgD~ 180 (229)
T COG1011 127 HQERKLRQLGLLD-YFDAVFISEDVGVAKPDPEIFEYALEKLGVPPEEALFVGDS 180 (229)
T ss_pred HHHHHHHHcCChh-hhheEEEecccccCCCCcHHHHHHHHHcCCCcceEEEECCC
Confidence 3455566666542 344767666653 1888888886531 1135667764
No 248
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A ....
Probab=81.22 E-value=1.5 Score=34.55 Aligned_cols=36 Identities=25% Similarity=0.352 Sum_probs=31.9
Q ss_pred CHHHHHHHHHHhcCCCCCCCceeEEEcCCcccHHHHHHH
Q 040896 203 DKGRALEYLLDTFGFNNASDFLPLYIGDDKTDEDAFKVI 241 (288)
Q Consensus 203 sKg~al~~l~~~~~~~~~~~~~vv~~GDs~ND~~Ml~~~ 241 (288)
.+....+.+++.++++++ ++++|||+..|+.+-..+
T Consensus 134 p~~~~~~~~~~~~~~~p~---~~~~vgD~~~d~~~A~~~ 169 (176)
T PF13419_consen 134 PDPDAYRRALEKLGIPPE---EILFVGDSPSDVEAAKEA 169 (176)
T ss_dssp TSHHHHHHHHHHHTSSGG---GEEEEESSHHHHHHHHHT
T ss_pred hHHHHHHHHHHHcCCCcc---eEEEEeCCHHHHHHHHHc
Confidence 456889999999999887 999999999998887776
No 249
>PRK09456 ?-D-glucose-1-phosphatase; Provisional
Probab=81.08 E-value=2.1 Score=35.37 Aligned_cols=36 Identities=19% Similarity=0.383 Sum_probs=29.4
Q ss_pred CHHHHHHHHHHhcCCCCCCCceeEEEcCCcccHHHHHHH
Q 040896 203 DKGRALEYLLDTFGFNNASDFLPLYIGDDKTDEDAFKVI 241 (288)
Q Consensus 203 sKg~al~~l~~~~~~~~~~~~~vv~~GDs~ND~~Ml~~~ 241 (288)
-+....+.+++.+|++++ ++++|||+..|+..=+.+
T Consensus 142 P~p~~~~~~~~~~~~~p~---~~l~vgD~~~di~aA~~a 177 (199)
T PRK09456 142 PEARIYQHVLQAEGFSAA---DAVFFDDNADNIEAANAL 177 (199)
T ss_pred CCHHHHHHHHHHcCCChh---HeEEeCCCHHHHHHHHHc
Confidence 457778888999999988 999999999886655554
No 250
>TIGR02009 PGMB-YQAB-SF beta-phosphoglucomutase family hydrolase. All of these are members of the larger Haloacid dehalogenase (HAD) subfamily IA and include the "variant 3" glu-asp version of the third conserved HAD domain (TIGR01509).
Probab=80.75 E-value=1.6 Score=35.24 Aligned_cols=28 Identities=21% Similarity=0.210 Sum_probs=19.3
Q ss_pred EEEEEecCCccccCcCCCCCCCCCHHHHHHHHHHhhc
Q 040896 22 IVVFLDYDGTLSPIVEDPDKAFMSDTMRMAVHEVAHF 58 (288)
Q Consensus 22 ~li~~DlDGTL~~~~~~~~~~~i~~~~~~aL~~L~~~ 58 (288)
++|+||+||||++. . +....+++++.+.
T Consensus 2 ~~iiFD~DGTL~ds-----~----~~~~~~~~~~~~~ 29 (185)
T TIGR02009 2 KAVIFDMDGVIVDT-----A----PLHAQAWKHLADK 29 (185)
T ss_pred CeEEEcCCCcccCC-----h----HHHHHHHHHHHHH
Confidence 68999999999993 2 2345555555444
No 251
>PF11019 DUF2608: Protein of unknown function (DUF2608); InterPro: IPR022565 This family is conserved in Bacteria. The function is not known.
Probab=80.71 E-value=6.2 Score=34.25 Aligned_cols=52 Identities=23% Similarity=0.326 Sum_probs=37.0
Q ss_pred CCCHHHHHHHHHHhcCCCCCCCceeEEEcCCcccH-HHHHHHHhcC-CceEEEEecC
Q 040896 201 DWDKGRALEYLLDTFGFNNASDFLPLYIGDDKTDE-DAFKVIRHMG-RGYPIIVSSV 255 (288)
Q Consensus 201 ~~sKg~al~~l~~~~~~~~~~~~~vv~~GDs~ND~-~Ml~~~~~~~-~g~~v~v~na 255 (288)
|.+||.++..++...|..++ .|+++-|+.-.+ .|=+++...+ ..+|+.-.++
T Consensus 160 ~~~KG~~L~~fL~~~~~~pk---~IIfIDD~~~nl~sv~~a~k~~~I~f~G~~Yt~~ 213 (252)
T PF11019_consen 160 GQDKGEVLKYFLDKINQSPK---KIIFIDDNKENLKSVEKACKKSGIDFIGFHYTGA 213 (252)
T ss_pred CCccHHHHHHHHHHcCCCCC---eEEEEeCCHHHHHHHHHHHhhCCCcEEEEEEcch
Confidence 89999999999999999888 999999995444 3434444332 2245555544
No 252
>TIGR01509 HAD-SF-IA-v3 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED. HAD subfamilies caused by an overly broad single model.
Probab=80.57 E-value=0.74 Score=37.10 Aligned_cols=34 Identities=18% Similarity=0.224 Sum_probs=29.6
Q ss_pred HHHHHHHHHhcCCCCCCCceeEEEcCCcccHHHHHHH
Q 040896 205 GRALEYLLDTFGFNNASDFLPLYIGDDKTDEDAFKVI 241 (288)
Q Consensus 205 g~al~~l~~~~~~~~~~~~~vv~~GDs~ND~~Ml~~~ 241 (288)
....+.+++.++++++ ++++|||+..|+.+-+.+
T Consensus 143 ~~~~~~~~~~~~~~~~---~~~~vgD~~~di~aA~~~ 176 (183)
T TIGR01509 143 PDIYLLALKKLGLKPE---ECLFVDDSPAGIEAAKAA 176 (183)
T ss_pred HHHHHHHHHHcCCCcc---eEEEEcCCHHHHHHHHHc
Confidence 6788899999999887 999999999998877666
No 253
>PRK10748 flavin mononucleotide phosphatase; Provisional
Probab=78.85 E-value=5.9 Score=33.82 Aligned_cols=15 Identities=27% Similarity=0.310 Sum_probs=13.5
Q ss_pred CcEEEEEecCCcccc
Q 040896 20 KKIVVFLDYDGTLSP 34 (288)
Q Consensus 20 ~~~li~~DlDGTL~~ 34 (288)
+.++|+||+||||++
T Consensus 9 ~~k~iiFDlDGTL~D 23 (238)
T PRK10748 9 RISALTFDLDDTLYD 23 (238)
T ss_pred CceeEEEcCcccccC
Confidence 358999999999999
No 254
>PRK10563 6-phosphogluconate phosphatase; Provisional
Probab=78.44 E-value=2 Score=36.02 Aligned_cols=15 Identities=47% Similarity=0.656 Sum_probs=13.5
Q ss_pred CcEEEEEecCCcccc
Q 040896 20 KKIVVFLDYDGTLSP 34 (288)
Q Consensus 20 ~~~li~~DlDGTL~~ 34 (288)
+.++++||+||||++
T Consensus 3 ~~~~viFD~DGTL~d 17 (221)
T PRK10563 3 QIEAVFFDCDGTLVD 17 (221)
T ss_pred CCCEEEECCCCCCCC
Confidence 368999999999998
No 255
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=78.10 E-value=2.5 Score=34.81 Aligned_cols=13 Identities=31% Similarity=0.317 Sum_probs=12.2
Q ss_pred EEEEEecCCcccc
Q 040896 22 IVVFLDYDGTLSP 34 (288)
Q Consensus 22 ~li~~DlDGTL~~ 34 (288)
++|+||+||||++
T Consensus 2 k~viFD~dgTLiD 14 (198)
T TIGR01428 2 KALVFDVYGTLFD 14 (198)
T ss_pred cEEEEeCCCcCcc
Confidence 6899999999998
No 256
>KOG3120 consensus Predicted haloacid dehalogenase-like hydrolase [General function prediction only]
Probab=78.05 E-value=4 Score=34.56 Aligned_cols=21 Identities=24% Similarity=0.434 Sum_probs=17.2
Q ss_pred hhcCCcEEEEEecCCccccCc
Q 040896 16 AAKGKKIVVFLDYDGTLSPIV 36 (288)
Q Consensus 16 ~~~~~~~li~~DlDGTL~~~~ 36 (288)
+.++.+.|++||+|.|+++.+
T Consensus 8 ~~~~~ril~~FDFD~TIid~d 28 (256)
T KOG3120|consen 8 ASSSPRILLVFDFDRTIIDQD 28 (256)
T ss_pred cccCCcEEEEEecCceeecCC
Confidence 345688999999999999843
No 257
>PRK09456 ?-D-glucose-1-phosphatase; Provisional
Probab=77.92 E-value=1.2 Score=36.92 Aligned_cols=14 Identities=14% Similarity=0.394 Sum_probs=12.3
Q ss_pred EEEEEecCCccccC
Q 040896 22 IVVFLDYDGTLSPI 35 (288)
Q Consensus 22 ~li~~DlDGTL~~~ 35 (288)
.+++|||||||++.
T Consensus 1 ~~viFDldgvL~d~ 14 (199)
T PRK09456 1 MLYIFDLGNVIVDI 14 (199)
T ss_pred CEEEEeCCCccccC
Confidence 37999999999983
No 258
>TIGR01681 HAD-SF-IIIC HAD-superfamily phosphatase, subfamily IIIC. No member of this subfamily is characterized with respect to function, however the MDP-1 protein is a characterized phosphatase. All of the characterized enzymes within subfamily III are phosphatases, and all of the active site residues characteristic of HAD-superfamily phosphatases are present in subfamily IIIC.
Probab=77.47 E-value=3.5 Score=31.64 Aligned_cols=34 Identities=12% Similarity=0.200 Sum_probs=29.4
Q ss_pred CHHHHHHHHHHhcC--CCCCCCceeEEEcCCcccHHHHH
Q 040896 203 DKGRALEYLLDTFG--FNNASDFLPLYIGDDKTDEDAFK 239 (288)
Q Consensus 203 sKg~al~~l~~~~~--~~~~~~~~vv~~GDs~ND~~Ml~ 239 (288)
.|......+++++| ++++ ++++|||+..|++-++
T Consensus 90 pkp~~~~~a~~~lg~~~~p~---~~l~igDs~~n~~~~~ 125 (128)
T TIGR01681 90 PKSPRLVEIALKLNGVLKPK---SILFVDDRPDNNEEVD 125 (128)
T ss_pred cHHHHHHHHHHHhcCCCCcc---eEEEECCCHhHHHHHH
Confidence 57889999999999 9888 9999999998866544
No 259
>TIGR01686 FkbH FkbH-like domain. The C-terminal portion of this domain is unique to this family (by BLAST).
Probab=77.11 E-value=4.2 Score=36.51 Aligned_cols=36 Identities=17% Similarity=0.338 Sum_probs=33.0
Q ss_pred CHHHHHHHHHHhcCCCCCCCceeEEEcCCcccHHHHHHH
Q 040896 203 DKGRALEYLLDTFGFNNASDFLPLYIGDDKTDEDAFKVI 241 (288)
Q Consensus 203 sKg~al~~l~~~~~~~~~~~~~vv~~GDs~ND~~Ml~~~ 241 (288)
.|...++.+++.+++.++ .+++|||+..|+.+-+..
T Consensus 87 pk~~~i~~~~~~l~i~~~---~~vfidD~~~d~~~~~~~ 122 (320)
T TIGR01686 87 PKSESLRKIAKKLNLGTD---SFLFIDDNPAERANVKIT 122 (320)
T ss_pred chHHHHHHHHHHhCCCcC---cEEEECCCHHHHHHHHHH
Confidence 899999999999999887 999999999998887765
No 260
>KOG2882 consensus p-Nitrophenyl phosphatase [Inorganic ion transport and metabolism]
Probab=77.03 E-value=4.2 Score=35.99 Aligned_cols=49 Identities=12% Similarity=0.036 Sum_probs=36.4
Q ss_pred cEEEEEecCCccccCcCCCCCCCCCHHHHHHHHHHhhcC-CEEEEcCCChhhHhhh
Q 040896 21 KIVVFLDYDGTLSPIVEDPDKAFMSDTMRMAVHEVAHFF-PTAIVSGRCLDKVSRF 75 (288)
Q Consensus 21 ~~li~~DlDGTL~~~~~~~~~~~i~~~~~~aL~~L~~~~-~v~i~TGR~~~~l~~~ 75 (288)
--.++||.||.|.. ....-|...++|..|++.+ .++++|=.+...-..+
T Consensus 22 ~DtfifDcDGVlW~------g~~~ipGs~e~l~~L~~~gK~i~fvTNNStksr~~y 71 (306)
T KOG2882|consen 22 FDTFIFDCDGVLWL------GEKPIPGSPEALNLLKSLGKQIIFVTNNSTKSREQY 71 (306)
T ss_pred cCEEEEcCCcceee------cCCCCCChHHHHHHHHHcCCcEEEEeCCCcchHHHH
Confidence 45799999999998 2234567888999998887 6888876666554444
No 261
>TIGR01548 HAD-SF-IA-hyp1 haloacid dehalogenase superfamily, subfamily IA hydrolase, TIGR01548. All but the Halobacterium sequence currently found are annotated as "Imidazoleglycerol-phosphate dehydratase", however, the source of the annotation could not be traced and significant homology could not be found between any of these sequences and known IGPD's.
Probab=76.75 E-value=2.3 Score=35.00 Aligned_cols=27 Identities=22% Similarity=0.492 Sum_probs=18.3
Q ss_pred EEEEecCCccccCcCCCCCCCCCHHHHHHHHHHhhc
Q 040896 23 VVFLDYDGTLSPIVEDPDKAFMSDTMRMAVHEVAHF 58 (288)
Q Consensus 23 li~~DlDGTL~~~~~~~~~~~i~~~~~~aL~~L~~~ 58 (288)
+|+||+||||++. . +...++++++-+.
T Consensus 2 ~viFD~DGTLiDs-----~----~~~~~a~~~~~~~ 28 (197)
T TIGR01548 2 ALVLDMDGVMADV-----S----QSYRRAIIDTVEH 28 (197)
T ss_pred ceEEecCceEEec-----h----HHHHHHHHHHHHH
Confidence 5899999999993 2 3345555555544
No 262
>TIGR01509 HAD-SF-IA-v3 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED. HAD subfamilies caused by an overly broad single model.
Probab=76.62 E-value=4.3 Score=32.50 Aligned_cols=12 Identities=33% Similarity=0.708 Sum_probs=10.9
Q ss_pred EEEEecCCcccc
Q 040896 23 VVFLDYDGTLSP 34 (288)
Q Consensus 23 li~~DlDGTL~~ 34 (288)
.++||+||||++
T Consensus 1 ~vlFDlDgtLv~ 12 (183)
T TIGR01509 1 AILFDLDGVLVD 12 (183)
T ss_pred CeeeccCCceec
Confidence 379999999999
No 263
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=76.60 E-value=1.2 Score=46.75 Aligned_cols=61 Identities=13% Similarity=0.100 Sum_probs=45.2
Q ss_pred CHHHHHHHHHHhcCCCCCCCceeEEEcCCcccHHHHHHHHhcCCce-EEEEecCCC-----CccceEEeCChhHH
Q 040896 203 DKGRALEYLLDTFGFNNASDFLPLYIGDDKTDEDAFKVIRHMGRGY-PIIVSSVPR-----ETKALYSLRDPDEV 271 (288)
Q Consensus 203 sKg~al~~l~~~~~~~~~~~~~vv~~GDs~ND~~Ml~~~~~~~~g~-~v~v~na~~-----~~~A~~~~~~~~~v 271 (288)
-+.......++.++++++ ++++|||+.+|+..-+.+ |+ .|.+..+.. ...+++++++..++
T Consensus 219 P~Pe~~~~a~~~lgv~p~---e~v~IgDs~~Di~AA~~a-----Gm~~I~v~~~~~~~~L~~~~a~~vi~~l~el 285 (1057)
T PLN02919 219 PAPDIFLAAAKILGVPTS---ECVVIEDALAGVQAARAA-----GMRCIAVTTTLSEEILKDAGPSLIRKDIGNI 285 (1057)
T ss_pred CCHHHHHHHHHHcCcCcc---cEEEEcCCHHHHHHHHHc-----CCEEEEECCCCCHHHHhhCCCCEEECChHHC
Confidence 346778888999999887 999999999998776666 44 566655432 13677888887764
No 264
>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family. This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.
Probab=76.19 E-value=4.8 Score=35.32 Aligned_cols=43 Identities=26% Similarity=0.295 Sum_probs=33.0
Q ss_pred HHHHHHHHHhcCCCCCCCceeEEEcCC-cccHHHHHHHHhcCCce-EEEEecC
Q 040896 205 GRALEYLLDTFGFNNASDFLPLYIGDD-KTDEDAFKVIRHMGRGY-PIIVSSV 255 (288)
Q Consensus 205 g~al~~l~~~~~~~~~~~~~vv~~GDs-~ND~~Ml~~~~~~~~g~-~v~v~na 255 (288)
...++.++++++++++ +++++||+ ..|+.+=+.+ |+ ++.|..+
T Consensus 205 p~~~~~~~~~~~~~~~---~~lmIGD~~~tDI~~A~~a-----Gi~si~V~~G 249 (279)
T TIGR01452 205 PYMFECITENFSIDPA---RTLMVGDRLETDILFGHRC-----GMTTVLVLSG 249 (279)
T ss_pred HHHHHHHHHHhCCChh---hEEEECCChHHHHHHHHHc-----CCcEEEECCC
Confidence 4567788888998887 99999999 5998876666 43 5666543
No 265
>PRK10725 fructose-1-P/6-phosphogluconate phosphatase; Provisional
Probab=74.88 E-value=3.1 Score=33.74 Aligned_cols=29 Identities=31% Similarity=0.265 Sum_probs=20.3
Q ss_pred cEEEEEecCCccccCcCCCCCCCCCHHHHHHHHHHhhc
Q 040896 21 KIVVFLDYDGTLSPIVEDPDKAFMSDTMRMAVHEVAHF 58 (288)
Q Consensus 21 ~~li~~DlDGTL~~~~~~~~~~~i~~~~~~aL~~L~~~ 58 (288)
.++++||+||||++. . +...++++++.+.
T Consensus 5 ~~~viFD~DGTLiDs-----~----~~~~~a~~~~~~~ 33 (188)
T PRK10725 5 YAGLIFDMDGTILDT-----E----PTHRKAWREVLGR 33 (188)
T ss_pred ceEEEEcCCCcCccC-----H----HHHHHHHHHHHHH
Confidence 689999999999993 2 2345566655544
No 266
>PRK10444 UMP phosphatase; Provisional
Probab=74.75 E-value=11 Score=32.52 Aligned_cols=62 Identities=15% Similarity=0.033 Sum_probs=44.3
Q ss_pred CHHHHHHHHHHhcCCCCCCCceeEEEcCCc-ccHHHHHHHHhcCCceEEEEecCC--C------CccceEEeCChhHH
Q 040896 203 DKGRALEYLLDTFGFNNASDFLPLYIGDDK-TDEDAFKVIRHMGRGYPIIVSSVP--R------ETKALYSLRDPDEV 271 (288)
Q Consensus 203 sKg~al~~l~~~~~~~~~~~~~vv~~GDs~-ND~~Ml~~~~~~~~g~~v~v~na~--~------~~~A~~~~~~~~~v 271 (288)
-+...++.+++.++++++ +++++||+. +|+.+=+.+. -.++.|..+. . +...++++++..++
T Consensus 175 P~~~~~~~~~~~~~~~~~---~~v~IGD~~~tDi~~A~~~G----~~~vlV~~G~~~~~~l~~~~~~pd~~~~sl~el 245 (248)
T PRK10444 175 PSPWIIRAALNKMQAHSE---ETVIVGDNLRTDILAGFQAG----LETILVLSGVSTLDDIDSMPFRPSWIYPSVADI 245 (248)
T ss_pred CCHHHHHHHHHHcCCCcc---cEEEECCCcHHHHHHHHHcC----CCEEEECCCCCCHHHHhcCCCCCCEEECCHHHh
Confidence 466778888888998877 999999996 8988777772 2467775442 1 12467787776554
No 267
>TIGR01668 YqeG_hyp_ppase HAD superfamily (subfamily IIIA) phosphatase, TIGR01668. This family consists of sequences from fungi, plants, cyanobacteria, gram-positive bacteria and Deinococcus. There is presently no characterization of any sequence in this family.
Probab=74.20 E-value=12 Score=30.22 Aligned_cols=45 Identities=22% Similarity=0.232 Sum_probs=35.0
Q ss_pred CHHHHHHHHHHhcCCCCCCCceeEEEcCCc-ccHHHHHHHHhcCCce-EEEEecC
Q 040896 203 DKGRALEYLLDTFGFNNASDFLPLYIGDDK-TDEDAFKVIRHMGRGY-PIIVSSV 255 (288)
Q Consensus 203 sKg~al~~l~~~~~~~~~~~~~vv~~GDs~-ND~~Ml~~~~~~~~g~-~v~v~na 255 (288)
-+...+..+++.++++++ ++++|||+. .|+..=+.+ |+ +|.+..+
T Consensus 92 P~p~~~~~~l~~~~~~~~---~~l~IGDs~~~Di~aA~~a-----Gi~~i~v~~g 138 (170)
T TIGR01668 92 PPGCAFRRAHPEMGLTSE---QVAVVGDRLFTDVMGGNRN-----GSYTILVEPL 138 (170)
T ss_pred CChHHHHHHHHHcCCCHH---HEEEECCcchHHHHHHHHc-----CCeEEEEccC
Confidence 467789999999999877 999999997 798866666 44 5665443
No 268
>TIGR02247 HAD-1A3-hyp Epoxide hydrolase N-terminal domain-like phosphatase. These appear to be members of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases by general homology and the conservation of all of the recognized catalytic motifs (although the first motif is unusual in the replacement of the more common aspartate with glycine...). The variable domain is found in between motifs 1 and 2, indicating membership in subfamily I and phylogeny and prediction of the alpha helical nature of the variable domain (by PSI-PRED) indicate membership in subfamily IA.
Probab=74.18 E-value=6.6 Score=32.55 Aligned_cols=14 Identities=36% Similarity=0.674 Sum_probs=12.8
Q ss_pred cEEEEEecCCcccc
Q 040896 21 KIVVFLDYDGTLSP 34 (288)
Q Consensus 21 ~~li~~DlDGTL~~ 34 (288)
.+.|+|||||||++
T Consensus 2 ik~viFDldGtL~d 15 (211)
T TIGR02247 2 IKAVIFDFGGVLLP 15 (211)
T ss_pred ceEEEEecCCceec
Confidence 46899999999999
No 269
>TIGR01549 HAD-SF-IA-v1 haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E. HAD subfamilies caused by an overly broad single model.
Probab=73.96 E-value=3.7 Score=32.08 Aligned_cols=27 Identities=30% Similarity=0.359 Sum_probs=18.4
Q ss_pred EEEEecCCccccCcCCCCCCCCCHHHHHHHHHHhhc
Q 040896 23 VVFLDYDGTLSPIVEDPDKAFMSDTMRMAVHEVAHF 58 (288)
Q Consensus 23 li~~DlDGTL~~~~~~~~~~~i~~~~~~aL~~L~~~ 58 (288)
+|+||+||||++. . +....++++..+.
T Consensus 1 ~iifD~DGTL~d~-----~----~~~~~~~~~~~~~ 27 (154)
T TIGR01549 1 AILFDIDGTLVDS-----S----FAIRRAFEETLEE 27 (154)
T ss_pred CeEecCCCccccc-----H----HHHHHHHHHHHHH
Confidence 4799999999992 1 3445566655544
No 270
>COG2503 Predicted secreted acid phosphatase [General function prediction only]
Probab=73.67 E-value=6.3 Score=33.85 Aligned_cols=30 Identities=37% Similarity=0.340 Sum_probs=21.2
Q ss_pred chhhHHHHHHhhcCCcEEEEEecCCccccC
Q 040896 6 ALDTFDRMVAAAKGKKIVVFLDYDGTLSPI 35 (288)
Q Consensus 6 ~~~~~~~~~~~~~~~~~li~~DlDGTL~~~ 35 (288)
|--.|+....+...+.+.|+.|||-|.++.
T Consensus 64 Ak~~~d~~~k~~k~K~~aVvlDlDETvLdN 93 (274)
T COG2503 64 AKIALDTQAKKKKGKKKAVVLDLDETVLDN 93 (274)
T ss_pred HHHHHHhhhccccCCCceEEEecchHhhcC
Confidence 444555445555556679999999999983
No 271
>cd00218 GlcAT-I Beta1,3-glucuronyltransferase I (GlcAT-I) is involved in the initial steps of proteoglycan synthesis. Beta1,3-glucuronyltransferase I (GlcAT-I) domain; GlcAT-I is a Key enzyme involved in the initial steps of proteoglycan synthesis. GlcAT-I catalyzes the transfer of a glucuronic acid moiety from the uridine diphosphate-glucuronic acid (UDP-GlcUA) to the common linkage region of trisaccharide Gal-beta-(1-3)-Gal-beta-(1-4)-Xyl of proteoglycans. The enzyme has two subdomains that bind the donor and acceptor substrate separately. The active site is located at the cleft between both subdomains in which the trisaccharide molecule is oriented perpendicular to the UDP. This family has been classified as Glycosyltransferase family 43 (GT-43).
Probab=73.59 E-value=7.6 Score=32.98 Aligned_cols=40 Identities=20% Similarity=0.397 Sum_probs=30.4
Q ss_pred CHHHHHHHHHHhcCCCCCCCceeEEEcCCcc--cHHHHHHHHhcC
Q 040896 203 DKGRALEYLLDTFGFNNASDFLPLYIGDDKT--DEDAFKVIRHMG 245 (288)
Q Consensus 203 sKg~al~~l~~~~~~~~~~~~~vv~~GDs~N--D~~Ml~~~~~~~ 245 (288)
..-.||++|.++++-..+ =|++|+|+.| |+++|+.++..+
T Consensus 79 qRn~AL~~ir~~~~~~~~---GVVyFADDdN~Ysl~lF~emR~i~ 120 (223)
T cd00218 79 QRNLALRWIREHLSAKLD---GVVYFADDDNTYDLELFEEMRKIK 120 (223)
T ss_pred HHHHHHHHHHhccccCcc---eEEEEccCCCcccHHHHHHHhccC
Confidence 344788888887643344 8899999988 999999987643
No 272
>PF04312 DUF460: Protein of unknown function (DUF460); InterPro: IPR007408 This is an archaeal protein of unknown function.
Probab=72.58 E-value=4 Score=31.77 Aligned_cols=63 Identities=17% Similarity=0.263 Sum_probs=39.5
Q ss_pred EEEEEecCCccccCcCCCCCCCCCHHHHHHHHHHhhcC-CEEEEcCCCh--hhHhhhcCCCCeEEEccCceeEeCCCCC
Q 040896 22 IVVFLDYDGTLSPIVEDPDKAFMSDTMRMAVHEVAHFF-PTAIVSGRCL--DKVSRFVQLKNVVYAGSHGMDISTPAGS 97 (288)
Q Consensus 22 ~li~~DlDGTL~~~~~~~~~~~i~~~~~~aL~~L~~~~-~v~i~TGR~~--~~l~~~~~~~~~~~i~~nGa~i~~~~~~ 97 (288)
-+-++||||.|+.-. +...++ .-+.++.+.+.+ +++|+|--.. ..+.++-.. -|+.+|.|+..
T Consensus 44 giAildL~G~~l~l~---S~R~~~--~~evi~~I~~~G~PviVAtDV~p~P~~V~Kia~~--------f~A~ly~P~~d 109 (138)
T PF04312_consen 44 GIAILDLDGELLDLK---SSRNMS--RSEVIEWISEYGKPVIVATDVSPPPETVKKIARS--------FNAVLYTPERD 109 (138)
T ss_pred EEEEEecCCcEEEEE---eecCCC--HHHHHHHHHHcCCEEEEEecCCCCcHHHHHHHHH--------hCCcccCCCCc
Confidence 456899999999743 222333 467788888887 8999986544 344443211 15666766543
No 273
>COG1608 Predicted archaeal kinase [General function prediction only]
Probab=71.38 E-value=21 Score=30.69 Aligned_cols=68 Identities=13% Similarity=0.126 Sum_probs=41.8
Q ss_pred cchhhHHHHHHhhcCCcEEEEEecCCccccCcCCCCCCCCCHHHHHHHHHHhhc-C-CEEEEcCCChhhHhhhc
Q 040896 5 SALDTFDRMVAAAKGKKIVVFLDYDGTLSPIVEDPDKAFMSDTMRMAVHEVAHF-F-PTAIVSGRCLDKVSRFV 76 (288)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~li~~DlDGTL~~~~~~~~~~~i~~~~~~aL~~L~~~-~-~v~i~TGR~~~~l~~~~ 76 (288)
|.|++..++.......+.++++|.||.+-.... ..+.......+..+... + .=.=+||-....++..+
T Consensus 148 SGDdIv~~LA~~l~pd~v~f~tdVdGVy~~~p~----~~p~~~~l~~i~~~~~~~gs~~~DVTGGi~~Kl~~~~ 217 (252)
T COG1608 148 SGDDIVLHLAKELKPDRVIFLTDVDGVYDRDPG----KVPDARLLSEIEGRVALGGSGGTDVTGGIAKKLEALL 217 (252)
T ss_pred eccHHHHHHHHHhCCCEEEEEecCCceecCCCC----cCccccchhhhhhhhhhcCcCcccchhhHHHHHHHHH
Confidence 678888898888888889999999999887432 12222333333332222 1 11345666666666554
No 274
>TIGR02252 DREG-2 REG-2-like, HAD superfamily (subfamily IA) hydrolase. Most likely, these sequences, like the vast majority of HAD sequences, represent phosphatase enzymes.
Probab=71.23 E-value=4.2 Score=33.47 Aligned_cols=14 Identities=29% Similarity=0.389 Sum_probs=12.4
Q ss_pred EEEEEecCCccccC
Q 040896 22 IVVFLDYDGTLSPI 35 (288)
Q Consensus 22 ~li~~DlDGTL~~~ 35 (288)
++++||+||||++.
T Consensus 1 k~viFDlDGTL~d~ 14 (203)
T TIGR02252 1 KLITFDAVGTLLAL 14 (203)
T ss_pred CeEEEecCCceeee
Confidence 57999999999993
No 275
>TIGR01691 enolase-ppase 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. This enzyme is the enolase-phosphatase of methionine salvage, a pathway that regenerates methionine from methylthioadenosine (MTA). Adenosylmethionine (AdoMet) is a donor of different moieties for various processes, including methylation reactions. Use of AdoMet for spermidine biosynthesis, which leads to polyamine biosynthesis, leaves MTA as a by-product that must be cleared. In Bacillus subtilis and related species, this single protein is replaced by separate enzymes with enolase and phosphatase activities.
Probab=69.23 E-value=9.4 Score=32.38 Aligned_cols=36 Identities=14% Similarity=0.155 Sum_probs=30.9
Q ss_pred CHHHHHHHHHHhcCCCCCCCceeEEEcCCcccHHHHHHH
Q 040896 203 DKGRALEYLLDTFGFNNASDFLPLYIGDDKTDEDAFKVI 241 (288)
Q Consensus 203 sKg~al~~l~~~~~~~~~~~~~vv~~GDs~ND~~Ml~~~ 241 (288)
.+......+++.+|++++ +++++||+..|+..=+.+
T Consensus 153 P~p~~y~~i~~~lgv~p~---e~lfVgDs~~Di~AA~~A 188 (220)
T TIGR01691 153 TEAQSYVKIAGQLGSPPR---EILFLSDIINELDAARKA 188 (220)
T ss_pred CCHHHHHHHHHHhCcChh---HEEEEeCCHHHHHHHHHc
Confidence 567788999999999987 999999999998876666
No 276
>PF13382 Adenine_deam_C: Adenine deaminase C-terminal domain; PDB: 3T8L_B 3T81_A 3NQB_A.
Probab=68.89 E-value=9.5 Score=31.06 Aligned_cols=62 Identities=24% Similarity=0.241 Sum_probs=41.0
Q ss_pred eeEEEcCCcccHHHHHHHHhc---CCceEEEEecCCC-----CccceEEeC-ChhHHHHHHHHHHHHhhhCCCC
Q 040896 224 LPLYIGDDKTDEDAFKVIRHM---GRGYPIIVSSVPR-----ETKALYSLR-DPDEVMSFLRRLARWKKSLGIP 288 (288)
Q Consensus 224 ~vv~~GDs~ND~~Ml~~~~~~---~~g~~v~v~na~~-----~~~A~~~~~-~~~~v~~~l~~~~~~~~~~~~~ 288 (288)
+++++|+ ||.+|..+++++ +.|+.++- ++.. -..|-...+ +.++|++.++++-+.-+++|.+
T Consensus 67 niiviG~--~~~dm~~A~n~l~~~gGG~vvv~-~g~v~a~lpLpi~GlmS~~~~eev~~~~~~l~~~~~~lG~~ 137 (171)
T PF13382_consen 67 NIIVIGT--NDEDMALAANRLIEMGGGIVVVD-DGEVLAELPLPIAGLMSDLPAEEVARQLEELEEALRELGCP 137 (171)
T ss_dssp -EEEEES--SHHHHHHHHHHHHHTTSEEEEEE-TTEEEEEEE-TBTTTBBSS-HHHHHHHHHHHHHHHHTTS-B
T ss_pred CEEEEEC--CHHHHHHHHHHHHHhCCCEEEEE-CCEEEEEEeccccceecCCCHHHHHHHHHHHHHHHHHcCCC
Confidence 9999997 688898888875 33555542 3321 134444333 5789999999999988888853
No 277
>TIGR01993 Pyr-5-nucltdase pyrimidine 5'-nucleotidase. These enzymes are members of the haloacid dehalogenase (HAD) superfamily of hydrolases, specifically the IA subfamily (variant 3, TIGR01509).
Probab=68.86 E-value=7.1 Score=31.61 Aligned_cols=38 Identities=11% Similarity=0.117 Sum_probs=22.3
Q ss_pred CHHHHHHHHHHhcCCCCCCCceeEEEcCCcc-------cHHHHHHHH
Q 040896 203 DKGRALEYLLDTFGFNNASDFLPLYIGDDKT-------DEDAFKVIR 242 (288)
Q Consensus 203 sKg~al~~l~~~~~~~~~~~~~vv~~GDs~N-------D~~Ml~~~~ 242 (288)
++ ..+..+++.+|+.. .++.+++..|... |-+++..+-
T Consensus 107 ~~-~~~~~~l~~~gl~~-~fd~i~~~~~~~~~~~~~KP~p~~~~~~~ 151 (184)
T TIGR01993 107 DR-AHARRALNRLGIED-CFDGIFCFDTANPDYLLPKPSPQAYEKAL 151 (184)
T ss_pred CH-HHHHHHHHHcCcHh-hhCeEEEeecccCccCCCCCCHHHHHHHH
Confidence 44 34667778888753 2346666655433 666766654
No 278
>PF06888 Put_Phosphatase: Putative Phosphatase; InterPro: IPR016965 This group represents phosphatases related to PHOSPHO1 and PHOSPHO2 []. It includes plant phosphatases with homology to the haloacid dehalogenase (HAD) superfamily [, ]. PHOSPHO1 is a phosphoethanolamine/phosphocholine phosphatase [], while PHOSPHO2 has high activity toward pyridoxal 5'-phosphate (PLP), and it is active at much lower level toward pyrophosphate, phosphoethanolamine (PEA)and phosphocholine (PCho) []. ; GO: 0016791 phosphatase activity
Probab=67.95 E-value=3.1 Score=35.69 Aligned_cols=13 Identities=31% Similarity=0.567 Sum_probs=11.9
Q ss_pred EEEEecCCccccC
Q 040896 23 VVFLDYDGTLSPI 35 (288)
Q Consensus 23 li~~DlDGTL~~~ 35 (288)
|++||+|+|+++.
T Consensus 2 LvvfDFD~TIvd~ 14 (234)
T PF06888_consen 2 LVVFDFDHTIVDQ 14 (234)
T ss_pred EEEEeCCCCccCC
Confidence 7999999999984
No 279
>PLN02177 glycerol-3-phosphate acyltransferase
Probab=67.51 E-value=3.9 Score=39.19 Aligned_cols=16 Identities=38% Similarity=0.312 Sum_probs=13.7
Q ss_pred CcEEEEEecCCccccC
Q 040896 20 KKIVVFLDYDGTLSPI 35 (288)
Q Consensus 20 ~~~li~~DlDGTL~~~ 35 (288)
....++||+||||+..
T Consensus 21 ~~~~~~FDfDGTLt~~ 36 (497)
T PLN02177 21 SNQTVAADLDGTLLIS 36 (497)
T ss_pred cccEEEEecCCcccCC
Confidence 4568999999999984
No 280
>COG5083 SMP2 Uncharacterized protein involved in plasmid maintenance [General function prediction only]
Probab=67.41 E-value=4.1 Score=37.91 Aligned_cols=56 Identities=14% Similarity=0.168 Sum_probs=33.0
Q ss_pred CCcEEEEEecCCccccCcCCC------CCCCCCHHHHHHHHHHhhcC-CEEEEcCCChhhHhh
Q 040896 19 GKKIVVFLDYDGTLSPIVEDP------DKAFMSDTMRMAVHEVAHFF-PTAIVSGRCLDKVSR 74 (288)
Q Consensus 19 ~~~~li~~DlDGTL~~~~~~~------~~~~i~~~~~~aL~~L~~~~-~v~i~TGR~~~~l~~ 74 (288)
...+++++|+|||++..+.-. ...--+....+...++.+++ .|..-|.|++..+.-
T Consensus 373 ~n~kiVVsDiDGTITkSD~~Ghv~~miGkdwth~gVAkLYtdI~rNGYkI~YltsR~~Gqa~s 435 (580)
T COG5083 373 NNKKIVVSDIDGTITKSDALGHVKQMIGKDWTHNGVAKLYTDIDRNGYKIKYLTSRSYGQADS 435 (580)
T ss_pred CCCcEEEEecCCcEEehhhHHHHHHHhccchhhcchhhhhhhhccCceEEEEEecccccchhh
Confidence 356899999999999732000 00001222333444455555 788899999875543
No 281
>smart00577 CPDc catalytic domain of ctd-like phosphatases.
Probab=66.89 E-value=2.9 Score=32.89 Aligned_cols=30 Identities=13% Similarity=-0.025 Sum_probs=24.1
Q ss_pred HHHHHHhcCCCCCCCceeEEEcCCcccHHHHHH
Q 040896 208 LEYLLDTFGFNNASDFLPLYIGDDKTDEDAFKV 240 (288)
Q Consensus 208 l~~l~~~~~~~~~~~~~vv~~GDs~ND~~Ml~~ 240 (288)
..+.++.++.+++ ++++|||+.+|+.+-..
T Consensus 104 ~~k~l~~l~~~p~---~~i~i~Ds~~~~~aa~~ 133 (148)
T smart00577 104 YVKDLSLLGRDLS---NVIIIDDSPDSWPFHPE 133 (148)
T ss_pred EeecHHHcCCChh---cEEEEECCHHHhhcCcc
Confidence 5556677888887 99999999999886543
No 282
>cd04256 AAK_P5CS_ProBA AAK_P5CS_ProBA: Glutamate-5-kinase (G5K) domain of the bifunctional delta 1-pyrroline-5-carboxylate synthetase (P5CS), composed of an N-terminal G5K (ProB) and a C-terminal glutamyl 5- phosphate reductase (G5PR, ProA), the first and second enzyme catalyzing proline (and, in mammals, ornithine) biosynthesis. G5K transfers the terminal phosphoryl group of ATP to the gamma-carboxyl group of glutamate, and is subject to feedback allosteric inhibition by proline or ornithine. In plants, proline plays an important role as an osmoprotectant and, in mammals, ornithine biosynthesis is crucial for proper ammonia detoxification, since a G5K mutation has been shown to cause human hyperammonaemia.
Probab=66.39 E-value=23 Score=31.34 Aligned_cols=71 Identities=13% Similarity=0.097 Sum_probs=38.4
Q ss_pred cchhhHHHHHHhhcCCcEEEEEecCCccccCcCCCCCCCCCHHHHHHHHHHhhcCCEEEEcCCChhhHhhh
Q 040896 5 SALDTFDRMVAAAKGKKIVVFLDYDGTLSPIVEDPDKAFMSDTMRMAVHEVAHFFPTAIVSGRCLDKVSRF 75 (288)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~li~~DlDGTL~~~~~~~~~~~i~~~~~~aL~~L~~~~~v~i~TGR~~~~l~~~ 75 (288)
++|.....+..+.+....++++|+||-+...+.+|+...++.-....+.++.....-...||.+...+...
T Consensus 179 d~D~lAa~lA~~l~Ad~Li~lTDVdGVy~~dP~~~~a~~I~~i~~~~~~~~~~~~~s~~gtGGM~~Kl~Aa 249 (284)
T cd04256 179 DNDSLAARLAVELKADLLILLSDVDGLYDGPPGSDDAKLIHTFYPGDQQSITFGTKSRVGTGGMEAKVKAA 249 (284)
T ss_pred ChHHHHHHHHHHcCCCEEEEEeCCCeeecCCCCCCCCeEcccccHhHHHHhhcccccCcccCCcHHHHHHH
Confidence 44555556666667788889999999998744333333333211222222221111134577777665553
No 283
>COG4483 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=66.38 E-value=5 Score=26.81 Aligned_cols=28 Identities=25% Similarity=0.545 Sum_probs=23.9
Q ss_pred HHHHHHHHhcCCCCCCCceeEEEcCCcccHHHHHH
Q 040896 206 RALEYLLDTFGFNNASDFLPLYIGDDKTDEDAFKV 240 (288)
Q Consensus 206 ~al~~l~~~~~~~~~~~~~vv~~GDs~ND~~Ml~~ 240 (288)
+-|+.|+..+| .+++|||-.-|++|++.
T Consensus 5 YDVqQlLK~~G-------~ivyfg~r~~~iemm~~ 32 (68)
T COG4483 5 YDVQQLLKKFG-------IIVYFGKRLYDIEMMQI 32 (68)
T ss_pred HHHHHHHHHCC-------eeeecCCHHHHHHHHHH
Confidence 45788999988 56999999999999875
No 284
>TIGR01525 ATPase-IB_hvy heavy metal translocating P-type ATPase. This alignment encompasses two equivalog models for the copper and cadmium-type heavy metal transporting P-type ATPases (TIGR01511 and TIGR01512) as well as those species which score ambiguously between both models. For more comments and references, see the files on TIGR01511 and 01512.
Probab=66.31 E-value=13 Score=36.09 Aligned_cols=59 Identities=15% Similarity=0.206 Sum_probs=46.0
Q ss_pred hhcCCcEEEEEecCCccccCcCCCCCCCCCHHHHHHHHHHhhcC--CEEEEcCCChhhHhhhc
Q 040896 16 AAKGKKIVVFLDYDGTLSPIVEDPDKAFMSDTMRMAVHEVAHFF--PTAIVSGRCLDKVSRFV 76 (288)
Q Consensus 16 ~~~~~~~li~~DlDGTL~~~~~~~~~~~i~~~~~~aL~~L~~~~--~v~i~TGR~~~~l~~~~ 76 (288)
......+.+++..||+++..-. -...+.|...++|++|++.+ +++++||.+........
T Consensus 359 ~~~~g~~~~~v~~~~~~~g~i~--~~d~~~~g~~e~l~~L~~~g~i~v~ivTgd~~~~a~~i~ 419 (556)
T TIGR01525 359 GESQGKTVVFVAVDGELLGVIA--LRDQLRPEAKEAIAALKRAGGIKLVMLTGDNRSAAEAVA 419 (556)
T ss_pred HhhCCcEEEEEEECCEEEEEEE--ecccchHhHHHHHHHHHHcCCCeEEEEeCCCHHHHHHHH
Confidence 3455668888899999886321 13468899999999998875 79999999998877764
No 285
>PF09949 DUF2183: Uncharacterized conserved protein (DUF2183); InterPro: IPR019236 This domain, found in various bacterial and fungal proteins, has no known function.
Probab=66.11 E-value=14 Score=27.19 Aligned_cols=66 Identities=18% Similarity=0.292 Sum_probs=40.9
Q ss_pred HHHHHHHHHHh--CC-C-eEEe-CCceEEEEeCCCCC-CHHHHHHHHHHhcCCCCCCCceeEEEcCC-cccHHHHHHH
Q 040896 171 LQEMVNSIVEA--YP-N-FRIS-GGKKVMEIRPCIDW-DKGRALEYLLDTFGFNNASDFLPLYIGDD-KTDEDAFKVI 241 (288)
Q Consensus 171 ~~~~l~~~~~~--~~-~-~~~~-~~~~~ieI~~~~~~-sKg~al~~l~~~~~~~~~~~~~vv~~GDs-~ND~~Ml~~~ 241 (288)
+...+.++++. +| | +... .+..+..+...+.. .|...++++++.+.-. ..+.+||| +-|.+.-..+
T Consensus 12 ly~~l~~Fl~~~~~P~G~~~Lr~~~~~~~~~~~~~~~~~K~~~i~~i~~~fP~~-----kfiLIGDsgq~DpeiY~~i 84 (100)
T PF09949_consen 12 LYPFLRDFLRRNGFPAGPLLLRDYGPSLSGLFKSGAEEHKRDNIERILRDFPER-----KFILIGDSGQHDPEIYAEI 84 (100)
T ss_pred HHHHHHHHHHhcCCCCCceEcccCCccccccccCCchhHHHHHHHHHHHHCCCC-----cEEEEeeCCCcCHHHHHHH
Confidence 44455565553 44 3 2222 13333344333133 7999999999998755 88999999 6687765444
No 286
>TIGR01493 HAD-SF-IA-v2 Haloacid dehalogenase superfamily, subfamily IA, variant 2 with 3rd motif like haloacid dehalogenase. The Subfamily IA and IB capping domains are predicted by PSI-PRED to consist of an alpha helical bundle. Subfamily I encompasses such a wide region of sequence space (the sequences are highly divergent) that modelling it with a single alignment is impossible, resulting in an overly broad description which allows in many unrelated sequences. Subfamily IA and IB are separated based on an aparrent phylogenetic bifurcation. Subfamily IA is still too broad to model, but cannot be further subdivided into large chunks based on phylogenetic trees. Of the three motifs defining the HAD superfamily, the third has three variant forms : (1) hhhhsDxxx(x)D, (2) hhhhssxxx(x)D and (3) hhhhDDxxx(x)s where _s_ refers to a small amino acid and _h_ to a hydrophobic one. All three of these variants are found in subfamily IA. Individual models were made based on seeds exhibiting only o
Probab=65.38 E-value=5.4 Score=31.91 Aligned_cols=13 Identities=31% Similarity=0.491 Sum_probs=11.3
Q ss_pred EEEEecCCccccC
Q 040896 23 VVFLDYDGTLSPI 35 (288)
Q Consensus 23 li~~DlDGTL~~~ 35 (288)
+++||+||||++.
T Consensus 1 ~viFD~DGTL~D~ 13 (175)
T TIGR01493 1 AMVFDVYGTLVDV 13 (175)
T ss_pred CeEEecCCcCccc
Confidence 4799999999993
No 287
>PLN02811 hydrolase
Probab=64.97 E-value=10 Score=31.81 Aligned_cols=60 Identities=15% Similarity=0.036 Sum_probs=40.2
Q ss_pred CHHHHHHHHHHhcC---CCCCCCceeEEEcCCcccHHHHHHHHhcCCce-EEEEecCCC----CccceEEeCChhH
Q 040896 203 DKGRALEYLLDTFG---FNNASDFLPLYIGDDKTDEDAFKVIRHMGRGY-PIIVSSVPR----ETKALYSLRDPDE 270 (288)
Q Consensus 203 sKg~al~~l~~~~~---~~~~~~~~vv~~GDs~ND~~Ml~~~~~~~~g~-~v~v~na~~----~~~A~~~~~~~~~ 270 (288)
-+.......+++++ ++++ ++++|||+..|+.+-+.+ |+ +|.+..+.. ...+++++++..+
T Consensus 138 P~p~~~~~a~~~~~~~~~~~~---~~v~IgDs~~di~aA~~a-----G~~~i~v~~~~~~~~~~~~~d~vi~~~~e 205 (220)
T PLN02811 138 PAPDIFLAAARRFEDGPVDPG---KVLVFEDAPSGVEAAKNA-----GMSVVMVPDPRLDKSYCKGADQVLSSLLD 205 (220)
T ss_pred CCcHHHHHHHHHhCCCCCCcc---ceEEEeccHhhHHHHHHC-----CCeEEEEeCCCCcHhhhhchhhHhcCHhh
Confidence 34567778888886 8777 999999999998877777 54 566654321 1235555555443
No 288
>TIGR01457 HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydrolase, TIGR01457. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram positive (low-GC) bacteria. Sequences found in this model are annotated variously as related to NagD or 4-nitrophenyl phosphatase, and this hypothetical equivalog, of all of those within the Class IIA subfamily, is most closely related to the E. coli NagD enzyme and the PGP_euk equivalog (TIGR01452). However, there is presently no evidence that this hypothetical equivalog has the same function of either those.
Probab=64.79 E-value=13 Score=31.97 Aligned_cols=45 Identities=22% Similarity=0.272 Sum_probs=36.6
Q ss_pred CHHHHHHHHHHhcCCCCCCCceeEEEcCCc-ccHHHHHHHHhcCCce-EEEEecC
Q 040896 203 DKGRALEYLLDTFGFNNASDFLPLYIGDDK-TDEDAFKVIRHMGRGY-PIIVSSV 255 (288)
Q Consensus 203 sKg~al~~l~~~~~~~~~~~~~vv~~GDs~-ND~~Ml~~~~~~~~g~-~v~v~na 255 (288)
-+....+.+++.++++.+ +++++||+. +|+.+=+.+ |+ ++.|..+
T Consensus 179 P~~~~~~~~~~~~~~~~~---~~~~VGD~~~~Di~~a~~~-----G~~~v~v~~G 225 (249)
T TIGR01457 179 PNAIIMEKAVEHLGTERE---ETLMVGDNYLTDIRAGIDA-----GIDTLLVHTG 225 (249)
T ss_pred ChHHHHHHHHHHcCCCcc---cEEEECCCchhhHHHHHHc-----CCcEEEEcCC
Confidence 467788899999999887 999999996 899987777 54 6777554
No 289
>PF03360 Glyco_transf_43: Glycosyltransferase family 43; InterPro: IPR005027 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 43 GT43 from CAZY comprises enzymes with only one known activities; beta-glucuronyltransferase(2.4.1 from EC);.; GO: 0015018 galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity, 0016020 membrane; PDB: 2D0J_B 3CU0_A 1FGG_B 1KWS_B 1V84_B 1V83_B 1V82_A.
Probab=64.79 E-value=12 Score=31.48 Aligned_cols=38 Identities=21% Similarity=0.321 Sum_probs=22.9
Q ss_pred HHHHHHHHHhcCCCCCCCceeEEEcCCcc--cHHHHHHHHhcC
Q 040896 205 GRALEYLLDTFGFNNASDFLPLYIGDDKT--DEDAFKVIRHMG 245 (288)
Q Consensus 205 g~al~~l~~~~~~~~~~~~~vv~~GDs~N--D~~Ml~~~~~~~ 245 (288)
-.||++|.....-..+ =|++|+|+.| |+.+|+.++..+
T Consensus 63 n~AL~~ir~~~~~~~~---GVVyFaDDdNtYdl~LF~emR~~k 102 (207)
T PF03360_consen 63 NAALRWIRNNANHRLD---GVVYFADDDNTYDLRLFDEMRKTK 102 (207)
T ss_dssp HHHHHHHHSTTTSSS----EEEEE--TTSEE-HHHHHHHCT-S
T ss_pred HHHHHHHHhcccCCCC---cEEEECCCCCeeeHHHHHHHHhhh
Confidence 3466666633333333 8999999999 999999987653
No 290
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=64.64 E-value=11 Score=33.09 Aligned_cols=36 Identities=14% Similarity=0.023 Sum_probs=27.9
Q ss_pred CHHHHHHHHHHhcCC-CCCCCceeEEEcCCcccHHHHHHH
Q 040896 203 DKGRALEYLLDTFGF-NNASDFLPLYIGDDKTDEDAFKVI 241 (288)
Q Consensus 203 sKg~al~~l~~~~~~-~~~~~~~vv~~GDs~ND~~Ml~~~ 241 (288)
.+...+...++.++. +.+ .+++|||+.+|+.+-+.+
T Consensus 252 p~p~~~~~~l~~~~~~~~~---~~~~vgD~~~d~~~a~~~ 288 (300)
T PHA02530 252 PDDVVKEEIFWEKIAPKYD---VLLAVDDRDQVVDMWRRI 288 (300)
T ss_pred CcHHHHHHHHHHHhccCce---EEEEEcCcHHHHHHHHHh
Confidence 444466666666666 345 999999999999999988
No 291
>PF11019 DUF2608: Protein of unknown function (DUF2608); InterPro: IPR022565 This family is conserved in Bacteria. The function is not known.
Probab=63.24 E-value=12 Score=32.55 Aligned_cols=28 Identities=21% Similarity=0.294 Sum_probs=20.3
Q ss_pred hHHHHHHhh-c-CCcEEEEEecCCccccCc
Q 040896 9 TFDRMVAAA-K-GKKIVVFLDYDGTLSPIV 36 (288)
Q Consensus 9 ~~~~~~~~~-~-~~~~li~~DlDGTL~~~~ 36 (288)
+|..|.... + ....|++||+|.||+.+.
T Consensus 6 s~~eV~~~~~~~~~~tLvvfDiDdTLi~~~ 35 (252)
T PF11019_consen 6 SFHEVQDYLENADQDTLVVFDIDDTLITPK 35 (252)
T ss_pred CHHHHHHHHHcCCCCeEEEEEcchhhhcCc
Confidence 466664443 2 278999999999999853
No 292
>KOG0208 consensus Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=63.23 E-value=8 Score=39.70 Aligned_cols=62 Identities=23% Similarity=0.306 Sum_probs=41.2
Q ss_pred CHHHHHHHHHHhcCCCCCCCceeEEEcCCcccHHHHHHHHhcCCceEEEEecCCCCccceEEeC--ChhHHHHHHH
Q 040896 203 DKGRALEYLLDTFGFNNASDFLPLYIGDDKTDEDAFKVIRHMGRGYPIIVSSVPRETKALYSLR--DPDEVMSFLR 276 (288)
Q Consensus 203 sKg~al~~l~~~~~~~~~~~~~vv~~GDs~ND~~Ml~~~~~~~~g~~v~v~na~~~~~A~~~~~--~~~~v~~~l~ 276 (288)
-|..-+..+ +++|. -|...||+.||=..|++|+ .|++-+.+..-.+|.+.-. +...|...|+
T Consensus 840 qK~~Lie~l-Qkl~y------~VgfCGDGANDCgALKaAd-----vGISLSeaEASvAApFTSk~~~I~cVp~vIr 903 (1140)
T KOG0208|consen 840 QKAELIEAL-QKLGY------KVGFCGDGANDCGALKAAD-----VGISLSEAEASVAAPFTSKTPSISCVPDVIR 903 (1140)
T ss_pred hHHHHHHHH-HhcCc------EEEecCCCcchhhhhhhcc-----cCcchhhhhHhhcCccccCCCchhhHhHHHh
Confidence 666665554 44555 7889999999999999994 6776665543345555432 4556666554
No 293
>PF06189 5-nucleotidase: 5'-nucleotidase; InterPro: IPR010394 This family consists of both eukaryotic and prokaryotic 5'-nucleotidase sequences (3.1.3.5 from EC).; GO: 0000166 nucleotide binding, 0000287 magnesium ion binding, 0008253 5'-nucleotidase activity, 0009117 nucleotide metabolic process, 0005737 cytoplasm
Probab=63.17 E-value=13 Score=32.30 Aligned_cols=56 Identities=16% Similarity=0.088 Sum_probs=36.6
Q ss_pred CcEEEEEecCCccccCcC---------------------CCCCCCCCHHHHHHHHHHhhc-C------CEEEEcCCChhh
Q 040896 20 KKIVVFLDYDGTLSPIVE---------------------DPDKAFMSDTMRMAVHEVAHF-F------PTAIVSGRCLDK 71 (288)
Q Consensus 20 ~~~li~~DlDGTL~~~~~---------------------~~~~~~i~~~~~~aL~~L~~~-~------~v~i~TGR~~~~ 71 (288)
...=|+||-|++|.+... .|-...+-.....+|.+|++. + +++|+|.|+...
T Consensus 120 ~qlRIAFDgDaVLfsDesE~vy~~~GL~~F~~~E~~~a~~Pl~~GP~~~fl~~L~~lQ~~~~~~~~piRtalVTAR~apa 199 (264)
T PF06189_consen 120 DQLRIAFDGDAVLFSDESERVYQEQGLEAFHEHEKENADKPLPEGPFKDFLKKLSKLQKKFPPENSPIRTALVTARSAPA 199 (264)
T ss_pred CceEEEEcCCeEeecCcchHhHHhccHHHHHHHHHHhccCCCcCCCHHHHHHHHHHHHHhcCCCCCceEEEEEEcCCCch
Confidence 345689999999998321 011222334667778888765 1 579999999876
Q ss_pred Hhhh
Q 040896 72 VSRF 75 (288)
Q Consensus 72 l~~~ 75 (288)
-.+.
T Consensus 200 h~Rv 203 (264)
T PF06189_consen 200 HERV 203 (264)
T ss_pred hHHH
Confidence 5554
No 294
>TIGR01544 HAD-SF-IE haloacid dehalogenase superfamily, subfamily IE hydrolase, TIGR01544. This group of sequences was found during searches for members of the haloacid dehalogenase (HAD) superfamily. All of the conserved catalytic motifs are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches (IA, TIGR01493, TIGR01509, TIGR01549; IB, TIGR01488; IC, TIGR01494; ID, TIGR01658; IF TIGR01545) of that subfamily as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.
Probab=61.70 E-value=26 Score=30.88 Aligned_cols=38 Identities=13% Similarity=0.216 Sum_probs=30.7
Q ss_pred CCHHHHHH-HHHHhcC--CCCCCCceeEEEcCCcccHHHHHHHH
Q 040896 202 WDKGRALE-YLLDTFG--FNNASDFLPLYIGDDKTDEDAFKVIR 242 (288)
Q Consensus 202 ~sKg~al~-~l~~~~~--~~~~~~~~vv~~GDs~ND~~Ml~~~~ 242 (288)
.+|...+. ...++++ .+++ +++++|||.||+.|..-++
T Consensus 191 ~~K~~~v~~~~~~~~~~~~~~~---~vI~vGDs~~Dl~ma~g~~ 231 (277)
T TIGR01544 191 FNKNHDVALRNTEYFNQLKDRS---NIILLGDSQGDLRMADGVA 231 (277)
T ss_pred cccHHHHHHHHHHHhCccCCcc---eEEEECcChhhhhHhcCCC
Confidence 57887776 5778887 6666 9999999999999977664
No 295
>KOG3040 consensus Predicted sugar phosphatase (HAD superfamily) [General function prediction only]
Probab=61.65 E-value=11 Score=31.68 Aligned_cols=51 Identities=16% Similarity=0.064 Sum_probs=35.7
Q ss_pred CCcEEEEEecCCccccCcCCCCCCCCCHHHHHHHHHHhhc-CCEEEE---cCCChhhHhhh
Q 040896 19 GKKIVVFLDYDGTLSPIVEDPDKAFMSDTMRMAVHEVAHF-FPTAIV---SGRCLDKVSRF 75 (288)
Q Consensus 19 ~~~~li~~DlDGTL~~~~~~~~~~~i~~~~~~aL~~L~~~-~~v~i~---TGR~~~~l~~~ 75 (288)
+..+-+.+|+-|||-.. + ..-|...+||++|+.. ..|=.+ |+.|...+.+.
T Consensus 5 ~~v~gvLlDlSGtLh~e-----~-~avpga~eAl~rLr~~~~kVkFvTNttk~Sk~~l~~r 59 (262)
T KOG3040|consen 5 RAVKGVLLDLSGTLHIE-----D-AAVPGAVEALKRLRDQHVKVKFVTNTTKESKRNLHER 59 (262)
T ss_pred cccceEEEeccceEecc-----c-ccCCCHHHHHHHHHhcCceEEEEecCcchhHHHHHHH
Confidence 45688999999999983 3 3566889999999966 344444 45555555554
No 296
>PRK05446 imidazole glycerol-phosphate dehydratase/histidinol phosphatase; Provisional
Probab=61.02 E-value=14 Score=33.86 Aligned_cols=38 Identities=24% Similarity=0.145 Sum_probs=31.6
Q ss_pred CCCHHHHHHHHHHhcCCCCCCCceeEEEcCCcccHHHHHHH
Q 040896 201 DWDKGRALEYLLDTFGFNNASDFLPLYIGDDKTDEDAFKVI 241 (288)
Q Consensus 201 ~~sKg~al~~l~~~~~~~~~~~~~vv~~GDs~ND~~Ml~~~ 241 (288)
+--|...+..+++.++++++ +++++||+.+|+..=+.+
T Consensus 103 rKP~p~~l~~a~~~l~v~~~---~svmIGDs~sDi~aAk~a 140 (354)
T PRK05446 103 RKPKTGLVEEYLAEGAIDLA---NSYVIGDRETDVQLAENM 140 (354)
T ss_pred CCCCHHHHHHHHHHcCCCcc---cEEEEcCCHHHHHHHHHC
Confidence 34567788888899998877 999999999998876666
No 297
>PRK12686 carbamate kinase; Reviewed
Probab=60.99 E-value=19 Score=32.27 Aligned_cols=68 Identities=9% Similarity=0.128 Sum_probs=45.9
Q ss_pred chhhHHHHHHhhcCCcEEEEEecCCccccCcCCCCCCCCCHHHHHHHHHHhhcCCEEEEcCCChhhHhhhc
Q 040896 6 ALDTFDRMVAAAKGKKIVVFLDYDGTLSPIVEDPDKAFMSDTMRMAVHEVAHFFPTAIVSGRCLDKVSRFV 76 (288)
Q Consensus 6 ~~~~~~~~~~~~~~~~~li~~DlDGTL~~~~~~~~~~~i~~~~~~aL~~L~~~~~v~i~TGR~~~~l~~~~ 76 (288)
+|..-..+..+.+....++++|.||-+.+.. +++...++.-..+.++++...+. +.||.+...+...+
T Consensus 212 ~D~~Aa~LA~~L~Ad~LIiLTDVdGVy~~~~-~p~ak~I~~I~~~e~~~li~~g~--~~tGGM~pKveAA~ 279 (312)
T PRK12686 212 KDFASEKLAEQIDADLLIILTGVENVFINFN-KPNQQKLDDITVAEAKQYIAEGQ--FAPGSMLPKVEAAI 279 (312)
T ss_pred ccHHHHHHHHHcCCCEEEEEeCchhhccCCC-CCCCeECCccCHHHHHHHhhCCC--ccCCCcHHHHHHHH
Confidence 4566666666677788889999999998643 23334444444555666665553 46899998877754
No 298
>KOG2134 consensus Polynucleotide kinase 3' phosphatase [Replication, recombination and repair]
Probab=60.71 E-value=8.1 Score=35.46 Aligned_cols=48 Identities=19% Similarity=0.243 Sum_probs=32.0
Q ss_pred cCCcEEEEEecCCccccCcC------CC-CCCCCCHHHHHHHHHHhhcC-CEEEEc
Q 040896 18 KGKKIVVFLDYDGTLSPIVE------DP-DKAFMSDTMRMAVHEVAHFF-PTAIVS 65 (288)
Q Consensus 18 ~~~~~li~~DlDGTL~~~~~------~~-~~~~i~~~~~~aL~~L~~~~-~v~i~T 65 (288)
+...+++.|||||||+.-.. ++ +...+.+..-.-|+.|.+.+ .++|-|
T Consensus 72 ~~~~K~i~FD~dgtlI~t~sg~vf~~~~~dw~~l~~~vp~Klktl~~~g~~l~ift 127 (422)
T KOG2134|consen 72 NGGSKIIMFDYDGTLIDTKSGKVFPKGSMDWRILFPEVPSKLKTLYQDGIKLFIFT 127 (422)
T ss_pred CCCcceEEEecCCceeecCCcceeeccCccceeeccccchhhhhhccCCeEEEEEe
Confidence 45679999999999997432 11 12334556667788888775 565554
No 299
>COG2216 KdpB High-affinity K+ transport system, ATPase chain B [Inorganic ion transport and metabolism]
Probab=60.45 E-value=3.8 Score=39.02 Aligned_cols=50 Identities=18% Similarity=0.127 Sum_probs=36.3
Q ss_pred CHHHHHHHHHHhcCCCCCCCceeEEEcCCcccHHHHHHHHhcCCceEEEEecCCC--CccceEE
Q 040896 203 DKGRALEYLLDTFGFNNASDFLPLYIGDDKTDEDAFKVIRHMGRGYPIIVSSVPR--ETKALYS 264 (288)
Q Consensus 203 sKg~al~~l~~~~~~~~~~~~~vv~~GDs~ND~~Ml~~~~~~~~g~~v~v~na~~--~~~A~~~ 264 (288)
+|-..++.-.+ .++ -|...||+.||-|.|..+ ..|++|.++.+ +.+|+.+
T Consensus 497 dK~~~I~~eQ~----~gr---lVAMtGDGTNDAPALAqA-----dVg~AMNsGTqAAkEAaNMV 548 (681)
T COG2216 497 DKLALIRQEQA----EGR---LVAMTGDGTNDAPALAQA-----DVGVAMNSGTQAAKEAANMV 548 (681)
T ss_pred HHHHHHHHHHh----cCc---EEEEcCCCCCcchhhhhc-----chhhhhccccHHHHHhhccc
Confidence 56555555333 234 788899999999999999 58999988765 3466655
No 300
>TIGR01511 ATPase-IB1_Cu copper-(or silver)-translocating P-type ATPase. One member from Halobacterium is annotated as "molybdenum-binding protein" although no evidence can be found for this classification.
Probab=60.42 E-value=17 Score=35.54 Aligned_cols=57 Identities=7% Similarity=0.126 Sum_probs=44.5
Q ss_pred cCCcEEEEEecCCccccCcCCCCCCCCCHHHHHHHHHHhhcC-CEEEEcCCChhhHhhhc
Q 040896 18 KGKKIVVFLDYDGTLSPIVEDPDKAFMSDTMRMAVHEVAHFF-PTAIVSGRCLDKVSRFV 76 (288)
Q Consensus 18 ~~~~~li~~DlDGTL~~~~~~~~~~~i~~~~~~aL~~L~~~~-~v~i~TGR~~~~l~~~~ 76 (288)
+.....++++.||+++..-. -...+.+...++|++|++.+ .++++||.+........
T Consensus 382 ~~g~~~~~~~~~~~~~g~~~--~~d~l~~~a~e~i~~Lk~~Gi~v~ilSgd~~~~a~~ia 439 (562)
T TIGR01511 382 EQGSTSVLVAVNGELAGVFA--LEDQLRPEAKEVIQALKRRGIEPVMLTGDNRKTAKAVA 439 (562)
T ss_pred hCCCEEEEEEECCEEEEEEE--ecccccHHHHHHHHHHHHcCCeEEEEcCCCHHHHHHHH
Confidence 34567888999999875311 12357889999999999985 89999999998877764
No 301
>PLN02499 glycerol-3-phosphate acyltransferase
Probab=60.31 E-value=8.7 Score=36.61 Aligned_cols=17 Identities=24% Similarity=0.266 Sum_probs=14.2
Q ss_pred cCCcEEEEEecCCcccc
Q 040896 18 KGKKIVVFLDYDGTLSP 34 (288)
Q Consensus 18 ~~~~~li~~DlDGTL~~ 34 (288)
.+...-+++|+||||+.
T Consensus 5 ~~~~~~~~fD~DGTLlr 21 (498)
T PLN02499 5 GTTSYSVVSELEGTLLK 21 (498)
T ss_pred CcccceEEEecccceec
Confidence 34566799999999998
No 302
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=60.01 E-value=7.8 Score=31.33 Aligned_cols=47 Identities=23% Similarity=0.198 Sum_probs=32.9
Q ss_pred CCCHHHHHHHHHHhcCCCCCCCceeEEEcCC-cccHHHHHHHHhcCCceEEEEec
Q 040896 201 DWDKGRALEYLLDTFGFNNASDFLPLYIGDD-KTDEDAFKVIRHMGRGYPIIVSS 254 (288)
Q Consensus 201 ~~sKg~al~~l~~~~~~~~~~~~~vv~~GDs-~ND~~Ml~~~~~~~~g~~v~v~n 254 (288)
+-=-+.|+++-++.++++.+ +|+.+||. ..|+= ..++.| -++|.|..
T Consensus 92 ~KP~~~~fr~Al~~m~l~~~---~vvmVGDqL~TDVl---ggnr~G-~~tIlV~P 139 (175)
T COG2179 92 KKPFGRAFRRALKEMNLPPE---EVVMVGDQLFTDVL---GGNRAG-MRTILVEP 139 (175)
T ss_pred cCccHHHHHHHHHHcCCChh---HEEEEcchhhhhhh---cccccC-cEEEEEEE
Confidence 33457899999999999988 99999998 44543 122221 36777763
No 303
>KOG0204 consensus Calcium transporting ATPase [Inorganic ion transport and metabolism]
Probab=59.55 E-value=8.7 Score=38.88 Aligned_cols=54 Identities=17% Similarity=0.131 Sum_probs=40.6
Q ss_pred CCHHHHHHHHHHhcCCCCCCCceeEEEcCCcccHHHHHHHHhcCCceEEEEecCC--C-CccceEEeCC
Q 040896 202 WDKGRALEYLLDTFGFNNASDFLPLYIGDDKTDEDAFKVIRHMGRGYPIIVSSVP--R-ETKALYSLRD 267 (288)
Q Consensus 202 ~sKg~al~~l~~~~~~~~~~~~~vv~~GDs~ND~~Ml~~~~~~~~g~~v~v~na~--~-~~~A~~~~~~ 267 (288)
.+|-.-++-|.++ ++ -|.+-||+.||-|.|+.+ ..|.+||=+- . +..++.++.|
T Consensus 725 ~DK~lLVk~L~~~----g~---VVAVTGDGTNDaPALkeA-----DVGlAMGIaGTeVAKEaSDIIi~D 781 (1034)
T KOG0204|consen 725 NDKHLLVKGLIKQ----GE---VVAVTGDGTNDAPALKEA-----DVGLAMGIAGTEVAKEASDIIILD 781 (1034)
T ss_pred chHHHHHHHHHhc----Cc---EEEEecCCCCCchhhhhc-----ccchhccccchhhhhhhCCeEEEc
Confidence 4888888888732 23 677789999999999999 5788887652 2 4578877643
No 304
>cd04237 AAK_NAGS-ABP AAK_NAGS-ABP: N-acetylglutamate (NAG) kinase-like domain of the NAG Synthase (NAGS) of the arginine-biosynthesis pathway (ABP) found in gamma- and beta-proteobacteria and higher plant chloroplasts. Domain architecture of these NAGS consisted of an N-terminal NAG kinase-like (ArgB) domain (this CD) and a C-terminal NAG synthase, acetyltransferase (ArgA) domain. Both bacterial and plant sequences in this CD have a conserved N-terminal extension; a similar sequence in the NAG kinases of the cyclic arginine-biosynthesis pathway has been implicated in feedback inhibition sensing. Plant sequences also have an N-terminal chloroplast transit peptide and an insert (approx. 70 residues) in the C-terminal region of ArgB. Members of this CD belong to the Amino Acid Kinase Superfamily (AAK).
Probab=58.61 E-value=21 Score=31.50 Aligned_cols=65 Identities=14% Similarity=0.143 Sum_probs=44.4
Q ss_pred cchhhHHHHHHhhcCCcEEEEEecCCccccCcCCCCCCCCCHHHHHHHHHHhhcCCEEEEcCCChhhHhhhc
Q 040896 5 SALDTFDRMVAAAKGKKIVVFLDYDGTLSPIVEDPDKAFMSDTMRMAVHEVAHFFPTAIVSGRCLDKVSRFV 76 (288)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~li~~DlDGTL~~~~~~~~~~~i~~~~~~aL~~L~~~~~v~i~TGR~~~~l~~~~ 76 (288)
+||.....+..+.+..+.++++|.||-+.+ +...++.-+.+.++++.+.+.+ .||.+...++..+
T Consensus 181 naD~~A~~LA~~L~a~klv~ltdv~GV~~~-----~~~~i~~i~~~e~~~l~~~~~~--~~ggM~~Kv~~a~ 245 (280)
T cd04237 181 SMEDVATAVAIALKADKLIFLTDGPGLLDD-----DGELIRELTAQEAEALLETGAL--LTNDTARLLQAAI 245 (280)
T ss_pred CHHHHHHHHHHHcCCCEEEEEeCCCcccCC-----CCCccccCCHHHHHHHHHcCCC--CCCCHHHHHHHHH
Confidence 566666666666677788889999999974 2233444445666666666544 4999998888765
No 305
>PTZ00489 glutamate 5-kinase; Provisional
Probab=58.27 E-value=55 Score=28.61 Aligned_cols=30 Identities=17% Similarity=0.108 Sum_probs=21.8
Q ss_pred chhhHHHHHHhhcCCcEEEEEecCCccccC
Q 040896 6 ALDTFDRMVAAAKGKKIVVFLDYDGTLSPI 35 (288)
Q Consensus 6 ~~~~~~~~~~~~~~~~~li~~DlDGTL~~~ 35 (288)
.|.....+..+.+....++++|.||-+..+
T Consensus 149 nD~lAa~lA~~l~Ad~LiilTDVdGVy~~d 178 (264)
T PTZ00489 149 NDRLSALVAHHFKADLLVILSDIDGYYTEN 178 (264)
T ss_pred hHHHHHHHHHHhCCCEEEEeeccCeeEcCC
Confidence 344455555566777888999999998853
No 306
>TIGR01685 MDP-1 magnesium-dependent phosphatase-1. This model represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterized as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues.
Probab=57.42 E-value=11 Score=30.74 Aligned_cols=23 Identities=13% Similarity=0.062 Sum_probs=19.0
Q ss_pred CCCCCCCceeEEEcCCcccHHHHHHH
Q 040896 216 GFNNASDFLPLYIGDDKTDEDAFKVI 241 (288)
Q Consensus 216 ~~~~~~~~~vv~~GDs~ND~~Ml~~~ 241 (288)
+++++ ++++|||+..|+..-..+
T Consensus 127 gl~p~---e~l~VgDs~~di~aA~~a 149 (174)
T TIGR01685 127 VLKPA---QILFFDDRTDNVREVWGY 149 (174)
T ss_pred CCCHH---HeEEEcChhHhHHHHHHh
Confidence 57777 999999999998876555
No 307
>cd04239 AAK_UMPK-like AAK_UMPK-like: UMP kinase (UMPK)-like, the microbial/chloroplast uridine monophosphate kinase (uridylate kinase) enzyme that catalyzes UMP phosphorylation and plays a key role in pyrimidine nucleotide biosynthesis. Regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway). The UMP kinases of E. coli (Ec) and Pyrococcus furiosus (Pf) are known to function as homohexamers, with GTP and UTP being allosteric effectors. Like other related enzymes (carbamate kinase, aspartokinase, and N-acetylglutamate kinase) the E. coli and most bacterial UMPKs have a conserved, N-terminal, lysine residue proposed to function in the catalysis of the phosphoryl group transfer, whereas most archaeal UMPKs appear to lack this residue and the Pyrococcus furiosus structure has an additional Mg ion bound to the ATP molecule which is proposed to function as the catalysis instead. Als
Probab=55.03 E-value=37 Score=28.75 Aligned_cols=71 Identities=13% Similarity=0.100 Sum_probs=41.9
Q ss_pred chhhHHHHHHhhcCCcEEEEEecCCccccCcC-CCCCCCC---CH-HH---------HHHHHHHhhc-CCEEEEcCCChh
Q 040896 6 ALDTFDRMVAAAKGKKIVVFLDYDGTLSPIVE-DPDKAFM---SD-TM---------RMAVHEVAHF-FPTAIVSGRCLD 70 (288)
Q Consensus 6 ~~~~~~~~~~~~~~~~~li~~DlDGTL~~~~~-~~~~~~i---~~-~~---------~~aL~~L~~~-~~v~i~TGR~~~ 70 (288)
.|.....+..+.+.+..++.+|+||-+...++ .|+...+ +. +. ..+++.+.+. ..++|+.|+...
T Consensus 134 sD~~A~~lA~~l~a~~li~~tdVdGvy~~dP~~~~~a~~i~~i~~~e~~~~~~~~~~~~a~~~~~~~~i~v~I~~g~~~~ 213 (229)
T cd04239 134 TDTAAALRAEEIGADVLLKATNVDGVYDADPKKNPDAKKYDRISYDELLKKGLKVMDATALTLCRRNKIPIIVFNGLKPG 213 (229)
T ss_pred cHHHHHHHHHHcCCCEEEEEECCCcccCCCCCCCCCCeEEeEEcHHHHHHHhcCCccHHHHHHHHHCCCeEEEECCCChh
Confidence 44555556666677778889999999975321 2222211 21 11 1233333444 378888888877
Q ss_pred hHhhhc
Q 040896 71 KVSRFV 76 (288)
Q Consensus 71 ~l~~~~ 76 (288)
.+...+
T Consensus 214 ~l~~~l 219 (229)
T cd04239 214 NLLRAL 219 (229)
T ss_pred HHHHHH
Confidence 777766
No 308
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=54.12 E-value=23 Score=37.38 Aligned_cols=30 Identities=30% Similarity=0.330 Sum_probs=20.7
Q ss_pred CcEEEEEecCCccccCcCCCCCCCCCHHHHHHHHHHhhc
Q 040896 20 KKIVVFLDYDGTLSPIVEDPDKAFMSDTMRMAVHEVAHF 58 (288)
Q Consensus 20 ~~~li~~DlDGTL~~~~~~~~~~~i~~~~~~aL~~L~~~ 58 (288)
+.+.++|||||||++. . +...++++++-+.
T Consensus 74 ~ikaVIFDlDGTLiDS-----~----~~~~~a~~~~~~~ 103 (1057)
T PLN02919 74 KVSAVLFDMDGVLCNS-----E----EPSRRAAVDVFAE 103 (1057)
T ss_pred CCCEEEECCCCCeEeC-----h----HHHHHHHHHHHHH
Confidence 5688999999999993 2 3345555555444
No 309
>TIGR01456 CECR5 HAD-superfamily class IIA hydrolase, TIGR01456, CECR5. The Schizosaccharomyces pombe sequence (EGAD|138276) is annotated as "phosphatidyl synthase," however this is due entirely to a C-terminal region of the protein (outside the region of similarity of this model) which is highly homologous to a family of CDP-alcohol phosphatidyltransferases. (Thus, the annotation of GP|4226073 from C. elegans as similar to phosphatidyl synthase, is a mistake as this gene does not contain the C-terminal portion). The physical connection of the phosphatidyl synthase and the HAD-superfamily hydrolase domain in S. pombe may, however, be an important clue to the substrate for the hydrolases in this equivalog.
Probab=53.59 E-value=48 Score=29.75 Aligned_cols=47 Identities=15% Similarity=0.196 Sum_probs=33.4
Q ss_pred eeEEEcCCc-ccHHHHHHHHhcCCc-eEEEEecC--CCC-----ccceEEeCChhHHHHHH
Q 040896 224 LPLYIGDDK-TDEDAFKVIRHMGRG-YPIIVSSV--PRE-----TKALYSLRDPDEVMSFL 275 (288)
Q Consensus 224 ~vv~~GDs~-ND~~Ml~~~~~~~~g-~~v~v~na--~~~-----~~A~~~~~~~~~v~~~l 275 (288)
+++++||+. .|+.+=..+ | .++.|..+ ..+ ...++++++..++..+|
T Consensus 265 ~~~mIGD~~~tDI~ga~~~-----G~~silV~tG~~~~~~~~~~~~p~~vv~~l~e~~~~i 320 (321)
T TIGR01456 265 ALYMVGDNPASDIIGAQNY-----GWFSCLVKTGVYNGGDDLKECKPTLIVNDVFDAVTKI 320 (321)
T ss_pred eEEEEcCChhhhhhhHHhC-----CceEEEecccccCCCCCCCCCCCCEEECCHHHHHHHh
Confidence 999999996 999876666 4 46777664 111 24678888887776654
No 310
>cd04252 AAK_NAGK-fArgBP AAK_NAGK-fArgBP: N-Acetyl-L-glutamate kinase (NAGK) of the fungal arginine-biosynthetic pathway (fArgBP). The nuclear-encoded, mitochondrial polyprotein precursor with an N-terminal NAGK (ArgB) domain (this CD), a central DUF619 domain, and a C-terminal reductase domain (ArgC, N-Acetylglutamate Phosphate Reductase, NAGPR). The precursor is cleaved in the mitochondria into two distinct enzymes (NAGK-DUF619 and NAGPR). Native molecular weights of these proteins indicate that the kinase is an octamer whereas the reductase is a dimer. This CD also includes some gamma-proteobacteria (Xanthomonas and Xylella) NAG kinases with an N-terminal NAGK (ArgB) domain (this CD) and a C-terminal DUF619 domain. The DUF619 domain is described as a putative distant homolog of the acetyltransferase, ArgA, predicted to function in NAG synthase association in fungi. Eukaryotic sequences have an N-terminal mitochondrial transit peptide. Members of this NAG kinase domain CD belong to th
Probab=53.38 E-value=35 Score=29.43 Aligned_cols=63 Identities=14% Similarity=0.005 Sum_probs=41.0
Q ss_pred cchhhHHHHHHhhcCCcEEEEEecCCccccCcCCCCCCCCCHHHH-HHHHHHhhcCCEEEEcCCChhhHhhh
Q 040896 5 SALDTFDRMVAAAKGKKIVVFLDYDGTLSPIVEDPDKAFMSDTMR-MAVHEVAHFFPTAIVSGRCLDKVSRF 75 (288)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~li~~DlDGTL~~~~~~~~~~~i~~~~~-~aL~~L~~~~~v~i~TGR~~~~l~~~ 75 (288)
+||.....+..+.+..+.++++|.||-+-. +...++.-.. +.+++|.+.+ .+||.+...++..
T Consensus 150 naD~~A~~lA~aL~a~kli~ltdv~GV~~~-----~g~~i~~i~~~~~~~~l~~~~---~vtgGM~~Kl~~~ 213 (248)
T cd04252 150 NADVAAGELARVLEPLKIVFLNETGGLLDG-----TGKKISAINLDEEYDDLMKQP---WVKYGTKLKIKEI 213 (248)
T ss_pred CHHHHHHHHHHHcCCCeEEEEECCcccCCC-----CCCcccccCHHHHHHHHHHcC---CcCCchHHHHHHH
Confidence 456666677777777788899999998854 1222333222 3455555544 4899999888754
No 311
>TIGR00761 argB acetylglutamate kinase. This model describes N-acetylglutamate kinases (ArgB) of many prokaryotes and the N-acetylglutamate kinase domains of multifunctional proteins from yeasts. This enzyme is the second step in the "acetylated" ornithine biosynthesis pathway. A related group of enzymes representing the first step of the pathway contain a homologous domain and are excluded from this model.
Probab=51.73 E-value=34 Score=29.02 Aligned_cols=64 Identities=20% Similarity=0.240 Sum_probs=41.8
Q ss_pred chhhHHHHHHhhcCCcEEEEEecCCccccCcCCCCCCCCCHHHHHHHHHHhhcCCEEEEcCCChhhHhhhc
Q 040896 6 ALDTFDRMVAAAKGKKIVVFLDYDGTLSPIVEDPDKAFMSDTMRMAVHEVAHFFPTAIVSGRCLDKVSRFV 76 (288)
Q Consensus 6 ~~~~~~~~~~~~~~~~~li~~DlDGTL~~~~~~~~~~~i~~~~~~aL~~L~~~~~v~i~TGR~~~~l~~~~ 76 (288)
+|.....+..+.+..+.++++|.||-+..+. ...++.-..+.+.++...+ .+||.+...++..+
T Consensus 156 sD~~A~~lA~~l~A~~li~ltdv~Gv~~~d~----~~~i~~i~~~e~~~l~~~~---~~tggm~~Kl~~a~ 219 (231)
T TIGR00761 156 ADTAAGALAAALGAEKLVLLTDVPGILNGDG----QSLISEIPLEEIEQLIEQG---IITGGMIPKVNAAL 219 (231)
T ss_pred HHHHHHHHHHHcCCCEEEEEECCCCeecCCC----CeeccccCHHHHHHHHHcC---CCCCchHHHHHHHH
Confidence 4556666666777788899999999997621 1123332234455555443 48999998887754
No 312
>PRK12314 gamma-glutamyl kinase; Provisional
Probab=51.70 E-value=69 Score=27.96 Aligned_cols=30 Identities=13% Similarity=0.123 Sum_probs=21.8
Q ss_pred chhhHHHHHHhhcCCcEEEEEecCCccccC
Q 040896 6 ALDTFDRMVAAAKGKKIVVFLDYDGTLSPI 35 (288)
Q Consensus 6 ~~~~~~~~~~~~~~~~~li~~DlDGTL~~~ 35 (288)
+|..-..+..+.+....++++|+||-+...
T Consensus 156 ~D~~Aa~lA~~l~Ad~liilTDVdGVy~~d 185 (266)
T PRK12314 156 NDRLSAIVAKLVKADLLIILSDIDGLYDKN 185 (266)
T ss_pred hHHHHHHHHHHhCCCEEEEEeCCCcccCCC
Confidence 344445555566777888999999999764
No 313
>TIGR01664 DNA-3'-Pase DNA 3'-phosphatase. The central phosphatase domain is a member of the IIIA subfamily (TIGR01662) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. As is common in this superfamily, the enzyme is magnesium dependent. A difference between this enzyme and other HAD-superfamily phosphatases is in the third conserved catalytic motif which usually contains two conserved aspartate residues believed to be involved in binding the magnesium ion. Here, the second aspartate is usually replaced by an arginine residue which may indicate an interaction with the phosphate backbone of the substrate. Alternatively, there is an additional conserved aspartate downstream of the ususal site which may indicate slightly different fold in this region.
Probab=51.43 E-value=16 Score=29.37 Aligned_cols=35 Identities=23% Similarity=0.374 Sum_probs=27.5
Q ss_pred HHHHHHHHHHhcC--CCCCCCceeEEEcCCc--------ccHHHHHHH
Q 040896 204 KGRALEYLLDTFG--FNNASDFLPLYIGDDK--------TDEDAFKVI 241 (288)
Q Consensus 204 Kg~al~~l~~~~~--~~~~~~~~vv~~GDs~--------ND~~Ml~~~ 241 (288)
+...++.+++.++ ++++ +++++||+. +|+..=+.+
T Consensus 110 ~p~~~~~~~~~~~~~~~~~---~~v~VGD~~~~~~~~~~~Di~aA~~a 154 (166)
T TIGR01664 110 MTGMWEYLQSQYNSPIKMT---RSFYVGDAAGRKLDFSDADIKFAKNL 154 (166)
T ss_pred ccHHHHHHHHHcCCCCCch---hcEEEECCCCCCCCCchhHHHHHHHC
Confidence 3568889999998 8777 999999986 587755554
No 314
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=50.84 E-value=12 Score=30.86 Aligned_cols=36 Identities=25% Similarity=0.279 Sum_probs=29.6
Q ss_pred CCCCCCHHHHHHHHHHhcCCCCCCCceeEEEcCCcccHHHHHHH
Q 040896 198 PCIDWDKGRALEYLLDTFGFNNASDFLPLYIGDDKTDEDAFKVI 241 (288)
Q Consensus 198 ~~~~~sKg~al~~l~~~~~~~~~~~~~vv~~GDs~ND~~Ml~~~ 241 (288)
+- |.+|+..++.+.+.. + .+++.|||..|++.-+..
T Consensus 143 ~f-G~dK~~vI~~l~e~~----e---~~fy~GDsvsDlsaakls 178 (220)
T COG4359 143 QF-GHDKSSVIHELSEPN----E---SIFYCGDSVSDLSAAKLS 178 (220)
T ss_pred cc-CCCcchhHHHhhcCC----c---eEEEecCCcccccHhhhh
Confidence 66 899999999988753 3 789999999998865554
No 315
>PRK14558 pyrH uridylate kinase; Provisional
Probab=50.83 E-value=44 Score=28.33 Aligned_cols=70 Identities=9% Similarity=-0.002 Sum_probs=41.1
Q ss_pred hhhHHHHHHhhcCCcEEEEEecCCccccCcC-CCCCCCCCHH----HH---------HHHHHHhhc-CCEEEEcCCChhh
Q 040896 7 LDTFDRMVAAAKGKKIVVFLDYDGTLSPIVE-DPDKAFMSDT----MR---------MAVHEVAHF-FPTAIVSGRCLDK 71 (288)
Q Consensus 7 ~~~~~~~~~~~~~~~~li~~DlDGTL~~~~~-~~~~~~i~~~----~~---------~aL~~L~~~-~~v~i~TGR~~~~ 71 (288)
|.....+..+.+.+..++++|+||-...+++ +|+...++.- .. .+++-+.+. .++.|++|+....
T Consensus 135 D~~a~~lA~~l~a~~l~~~tdVdGvy~~dP~~~~~a~~i~~i~~~e~~~~g~~~~d~~a~~~a~~~gi~v~I~ng~~~~~ 214 (231)
T PRK14558 135 DTAAALRAVEMKADILIKATKVDGIYDKDPKKFPDAKKIDHLTFSEAIKMGLKVMDTEAFSICKKYGITILVINFFEPGN 214 (231)
T ss_pred HHHHHHHHHHcCCCEEEEEecCCeeEccCCCCCCCCeEcccccHHHHHHcCcccccHHHHHHHHHCCCCEEEEeCCCCCH
Confidence 4445555666677888899999999986432 2322222221 11 223333343 3788888887766
Q ss_pred Hhhhc
Q 040896 72 VSRFV 76 (288)
Q Consensus 72 l~~~~ 76 (288)
+...+
T Consensus 215 l~~~l 219 (231)
T PRK14558 215 LLKAL 219 (231)
T ss_pred HHHHH
Confidence 66655
No 316
>TIGR01460 HAD-SF-IIA Haloacid Dehalogenase Superfamily Class (subfamily) IIA. Many of the genes in this subfamily have been annotated as "pNPPase" "4-nitrophenyl phosphatase" or "NPPase". These all refer to the same activity versus a common lab test compound used to determine phosphatase activity. There is no evidence that this activity is physiologically relevant.
Probab=50.81 E-value=27 Score=29.77 Aligned_cols=36 Identities=17% Similarity=0.079 Sum_probs=28.6
Q ss_pred CHHHHHHHHHHhcCCCCCCCcee-EEEcCCc-ccHHHHHHH
Q 040896 203 DKGRALEYLLDTFGFNNASDFLP-LYIGDDK-TDEDAFKVI 241 (288)
Q Consensus 203 sKg~al~~l~~~~~~~~~~~~~v-v~~GDs~-ND~~Ml~~~ 241 (288)
-+..-.+.++++++++.+ ++ +++||+. +|+.+=+.+
T Consensus 189 P~~~~~~~~~~~~~~~~~---~~~~~IGD~~~~Di~~A~~~ 226 (236)
T TIGR01460 189 PSPAIYRAALNLLQARPE---RRDVMVGDNLRTDILGAKNA 226 (236)
T ss_pred CCHHHHHHHHHHhCCCCc---cceEEECCCcHHHHHHHHHC
Confidence 456778888888888765 66 9999997 899876665
No 317
>cd04242 AAK_G5K_ProB AAK_G5K_ProB: Glutamate-5-kinase (G5K) catalyzes glutamate-dependent ATP cleavage; G5K transfers the terminal phosphoryl group of ATP to the gamma-carboxyl group of glutamate, in the first and controlling step of proline (and, in mammals, ornithine) biosynthesis. G5K is subject to feedback allosteric inhibition by proline or ornithine. In microorganisms and plants, proline plays an important role as an osmoprotectant and, in mammals, ornithine biosynthesis is crucial for proper ammonia detoxification, since a G5K mutation has been shown to cause human hyperammonaemia. Microbial G5K generally consists of two domains: a catalytic G5K domain and one PUA (pseudo uridine synthases and archaeosine-specific transglycosylases) domain, and some lack the PUA domain. G5K requires free Mg for activity, it is tetrameric, and it aggregates to higher forms in a proline-dependent way. G5K lacking the PUA domain remains tetrameric, active, and proline-inhibitable, but the Mg requir
Probab=50.31 E-value=29 Score=29.91 Aligned_cols=30 Identities=10% Similarity=0.090 Sum_probs=23.0
Q ss_pred chhhHHHHHHhhcCCcEEEEEecCCccccC
Q 040896 6 ALDTFDRMVAAAKGKKIVVFLDYDGTLSPI 35 (288)
Q Consensus 6 ~~~~~~~~~~~~~~~~~li~~DlDGTL~~~ 35 (288)
+|..-..+..+.+....++++|.||-+...
T Consensus 144 ~D~~A~~lA~~l~Ad~liilTDVdGvy~~d 173 (251)
T cd04242 144 NDRLSALVAGLVNADLLILLSDVDGLYDKN 173 (251)
T ss_pred hHHHHHHHHHHcCCCEEEEecCcCEEEeCC
Confidence 455556666666778888999999999764
No 318
>PRK00358 pyrH uridylate kinase; Provisional
Probab=50.19 E-value=50 Score=27.93 Aligned_cols=71 Identities=13% Similarity=0.093 Sum_probs=41.9
Q ss_pred chhhHHHHHHhhcCCcEEEEEecCCccccCc-CCCCCCCCCHHH-------------HHHHHHHhhc-CCEEEEcCCChh
Q 040896 6 ALDTFDRMVAAAKGKKIVVFLDYDGTLSPIV-EDPDKAFMSDTM-------------RMAVHEVAHF-FPTAIVSGRCLD 70 (288)
Q Consensus 6 ~~~~~~~~~~~~~~~~~li~~DlDGTL~~~~-~~~~~~~i~~~~-------------~~aL~~L~~~-~~v~i~TGR~~~ 70 (288)
.|.....+..+.+....++++|+||-....+ .+|+...++.-. ..+++.+.+. ..+.|++|+...
T Consensus 136 sD~~A~~lA~~l~A~~li~~tdVdGVy~~dP~~~~~a~~i~~i~~~e~~~~g~~~~d~~a~~~a~~~~i~v~I~~g~~~~ 215 (231)
T PRK00358 136 TDTAAALRAEEIGADVLLKATNVDGVYDADPKKDPDAKKYDRLTYDEVLEKGLKVMDATAISLARDNKIPIIVFNMNKPG 215 (231)
T ss_pred chHHHHHHHHHcCCCEEEEeeCcCceEcCCCCCCCCCEEeeEecHHHHHHcCCcchhHHHHHHHHHcCCcEEEECCCCch
Confidence 4555566666677788888999999997532 222222222111 1223333333 378888888777
Q ss_pred hHhhhc
Q 040896 71 KVSRFV 76 (288)
Q Consensus 71 ~l~~~~ 76 (288)
.+..++
T Consensus 216 ~l~~~l 221 (231)
T PRK00358 216 NLKRVV 221 (231)
T ss_pred HHHHHH
Confidence 777766
No 319
>PF06014 DUF910: Bacterial protein of unknown function (DUF910); InterPro: IPR009256 This family consists of several short bacterial proteins of unknown function.; PDB: 2NN4_A.
Probab=50.12 E-value=7.5 Score=25.86 Aligned_cols=28 Identities=29% Similarity=0.603 Sum_probs=17.9
Q ss_pred HHHHHHHHhcCCCCCCCceeEEEcCCcccHHHHHH
Q 040896 206 RALEYLLDTFGFNNASDFLPLYIGDDKTDEDAFKV 240 (288)
Q Consensus 206 ~al~~l~~~~~~~~~~~~~vv~~GDs~ND~~Ml~~ 240 (288)
+=|+.|++++| .++++||-.-|++|++.
T Consensus 5 yDVqQLLK~fG-------~~IY~gdr~~DielM~~ 32 (62)
T PF06014_consen 5 YDVQQLLKKFG-------IIIYVGDRLWDIELMEI 32 (62)
T ss_dssp HHHHHHHHTTS------------S-HHHHHHHHHH
T ss_pred HHHHHHHHHCC-------EEEEeCChHHHHHHHHH
Confidence 44778888888 45999999999999764
No 320
>TIGR01092 P5CS delta l-pyrroline-5-carboxylate synthetase. This protein contains a glutamate 5-kinase (ProB, EC 2.7.2.11) region followed by a gamma-glutamyl phosphate reductase (ProA, EC 1.2.1.41) region.
Probab=49.62 E-value=54 Score=33.07 Aligned_cols=70 Identities=19% Similarity=0.200 Sum_probs=41.9
Q ss_pred chhhHHHHHHhhcCCcEEEEEecCCccccCcCCCCCCC-------------------------CCHHHHHHHHHHhhc-C
Q 040896 6 ALDTFDRMVAAAKGKKIVVFLDYDGTLSPIVEDPDKAF-------------------------MSDTMRMAVHEVAHF-F 59 (288)
Q Consensus 6 ~~~~~~~~~~~~~~~~~li~~DlDGTL~~~~~~~~~~~-------------------------i~~~~~~aL~~L~~~-~ 59 (288)
+|..-..+..+.+....++++|+||-+..+..+++... +.++. ++...+.+. .
T Consensus 169 ~D~lAa~lA~~l~Ad~LiilTDVdGVy~~dP~~~~a~~I~~i~~~~~~~~i~~~~~~~~~tGGM~~Kl-~aa~~a~~~gi 247 (715)
T TIGR01092 169 NDSLAALLALELKADLLILLSDVEGLYDGPPSDDDSKLIDTFYKEKHQGEITFGTKSRLGRGGMTAKV-KAAVWAAYGGT 247 (715)
T ss_pred hHHHHHHHHHHcCCCEEEEEeCCCeeeCCCCCCCCCeEeeeecccchhhhhccCcccccCCCCchHHH-HHHHHHHHCCC
Confidence 45555566666677888899999999976432221111 12222 333333334 3
Q ss_pred CEEEEcCCChhhHhhhc
Q 040896 60 PTAIVSGRCLDKVSRFV 76 (288)
Q Consensus 60 ~v~i~TGR~~~~l~~~~ 76 (288)
.++|++|+....+..++
T Consensus 248 ~v~I~~g~~~~~l~~~l 264 (715)
T TIGR01092 248 PVIIASGTAPKNITKVV 264 (715)
T ss_pred eEEEeCCCCcchHHHHh
Confidence 78888888777777665
No 321
>cd04253 AAK_UMPK-PyrH-Pf AAK_UMPK-PyrH-Pf: UMP kinase (UMPK)-Pf, the mostly archaeal uridine monophosphate kinase (uridylate kinase) enzymes that catalyze UMP phosphorylation and play a key role in pyrimidine nucleotide biosynthesis; regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway). The UMP kinase of Pyrococcus furiosus (Pf) is known to function as a homohexamer, with GTP and UTP being allosteric effectors. Like other related enzymes (carbamate kinase, aspartokinase, and N-acetylglutamate kinase) the E. coli and most bacterial UMPKs have a conserved, N-terminal, lysine residue proposed to function in the catalysis of the phosphoryl group transfer, whereas most archaeal UMPKs (this CD) appear to lack this residue and the Pyrococcus furiosus structure has an additional Mg ion bound to the ATP molecule which is proposed to function as the catalysis instead. Members of thi
Probab=49.62 E-value=72 Score=26.84 Aligned_cols=31 Identities=13% Similarity=0.034 Sum_probs=24.3
Q ss_pred cchhhHHHHHHhhcCCcEEEEEecCCccccC
Q 040896 5 SALDTFDRMVAAAKGKKIVVFLDYDGTLSPI 35 (288)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~li~~DlDGTL~~~ 35 (288)
+.|.....+..+.+....++++|.||-+..+
T Consensus 116 s~D~~a~~lA~~l~a~~li~~tdVdGVy~~d 146 (221)
T cd04253 116 STDAVAALLAERLGADLLINATNVDGVYSKD 146 (221)
T ss_pred ccHHHHHHHHHHcCCCEEEEEeCCCeeECCC
Confidence 4566667777777888888999999999754
No 322
>KOG1605 consensus TFIIF-interacting CTD phosphatase, including NLI-interacting factor (involved in RNA polymerase II regulation) [Transcription]
Probab=48.95 E-value=11 Score=33.00 Aligned_cols=17 Identities=29% Similarity=0.300 Sum_probs=14.9
Q ss_pred cCCcEEEEEecCCcccc
Q 040896 18 KGKKIVVFLDYDGTLSP 34 (288)
Q Consensus 18 ~~~~~li~~DlDGTL~~ 34 (288)
..++|.+++|||.||..
T Consensus 86 ~~~kk~lVLDLDeTLvH 102 (262)
T KOG1605|consen 86 TVGRKTLVLDLDETLVH 102 (262)
T ss_pred cCCCceEEEeCCCcccc
Confidence 35789999999999987
No 323
>PF12710 HAD: haloacid dehalogenase-like hydrolase; PDB: 3P96_A 3N28_A 3FVV_A 1RKU_A 1RKV_A 1Y8A_A 2FEA_B 3KD3_B.
Probab=48.66 E-value=14 Score=29.83 Aligned_cols=36 Identities=17% Similarity=0.134 Sum_probs=27.1
Q ss_pred HHHHHHhhcC-CEEEEcCCChhhHhhhc---CCCCeEEEc
Q 040896 50 MAVHEVAHFF-PTAIVSGRCLDKVSRFV---QLKNVVYAG 85 (288)
Q Consensus 50 ~aL~~L~~~~-~v~i~TGR~~~~l~~~~---~~~~~~~i~ 85 (288)
+.|+++++.+ .++|+||-+...+.++. +++...+++
T Consensus 96 e~i~~~~~~~~~v~IvS~~~~~~i~~~~~~~~i~~~~v~~ 135 (192)
T PF12710_consen 96 ELIRELKDNGIKVVIVSGSPDEIIEPIAERLGIDDDNVIG 135 (192)
T ss_dssp HHHHHHHHTTSEEEEEEEEEHHHHHHHHHHTTSSEGGEEE
T ss_pred HHHHHHHHCCCEEEEECCCcHHHHHHHHHHcCCCceEEEE
Confidence 7888877774 89999999988888764 666544554
No 324
>cd04254 AAK_UMPK-PyrH-Ec UMP kinase (UMPK)-Ec, the microbial/chloroplast uridine monophosphate kinase (uridylate kinase) enzyme that catalyzes UMP phosphorylation and plays a key role in pyrimidine nucleotide biosynthesis; regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway). The UMP kinase of E. coli (Ec) is known to function as a homohexamer, with GTP and UTP being allosteric effectors. Like other related enzymes (carbamate kinase, aspartokinase, and N-acetylglutamate kinase) the E. coli and most bacterial and chloroplast UMPKs (this CD) have a conserved, N-terminal, lysine residue proposed to function in the catalysis of the phosphoryl group transfer, whereas most archaeal UMPKs appear to lack this residue and the Pyrococcus furiosus structure has an additional Mg ion bound to the ATP molecule which is proposed to function as the catalysis instead. Members of this CD be
Probab=48.02 E-value=43 Score=28.47 Aligned_cols=72 Identities=10% Similarity=0.029 Sum_probs=44.0
Q ss_pred cchhhHHHHHHhhcCCcEEEEEecCCccccCc-CCCCCCCCCHH-------------HHHHHHHHhhc-CCEEEEcCCCh
Q 040896 5 SALDTFDRMVAAAKGKKIVVFLDYDGTLSPIV-EDPDKAFMSDT-------------MRMAVHEVAHF-FPTAIVSGRCL 69 (288)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~li~~DlDGTL~~~~-~~~~~~~i~~~-------------~~~aL~~L~~~-~~v~i~TGR~~ 69 (288)
+.|.....+..+.+.+..++++|.||-+..+. .+|+...++.- -..+++-+.+. ..+.|++|+..
T Consensus 135 ~~D~~a~~lA~~l~a~~l~~~tdVdGvy~~dp~~~~~a~~i~~i~~~~~~~~~~~~~d~~a~~~a~~~gi~~~I~~g~~~ 214 (231)
T cd04254 135 TTDTAAALRAIEINADVILKATKVDGVYDADPKKNPNAKRYDHLTYDEVLSKGLKVMDATAFTLCRDNNLPIVVFNINEP 214 (231)
T ss_pred CcHHHHHHHHHHcCCCEEEEEeCCCEEEecCCCCCCCcEEeeEecHHHHHhcchhhhHHHHHHHHHHCCCeEEEEeCCCc
Confidence 34556666666777788888999999998532 22222111111 12223333434 37888899988
Q ss_pred hhHhhhc
Q 040896 70 DKVSRFV 76 (288)
Q Consensus 70 ~~l~~~~ 76 (288)
..+.+++
T Consensus 215 ~~l~~~l 221 (231)
T cd04254 215 GNLLKAV 221 (231)
T ss_pred cHHHHHH
Confidence 8888876
No 325
>PRK14058 acetylglutamate/acetylaminoadipate kinase; Provisional
Probab=47.99 E-value=67 Score=28.00 Aligned_cols=64 Identities=16% Similarity=0.181 Sum_probs=36.8
Q ss_pred cchhhHHHHHHhhcCCcEEEEEecCCccccCcCCCCCCCCCHHHHHHHHHHhhcCCEEEEcCCChhhHhhh
Q 040896 5 SALDTFDRMVAAAKGKKIVVFLDYDGTLSPIVEDPDKAFMSDTMRMAVHEVAHFFPTAIVSGRCLDKVSRF 75 (288)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~li~~DlDGTL~~~~~~~~~~~i~~~~~~aL~~L~~~~~v~i~TGR~~~~l~~~ 75 (288)
++|.....+..+.+..+.++++|.||-+..+++ ....++.-..+.++++.+ .+||.+...+...
T Consensus 169 ~~D~~A~~lA~~l~A~~li~ltdv~Gv~~~~p~--~~~~i~~i~~~e~~~l~~-----~~tGgM~~Kl~aa 232 (268)
T PRK14058 169 DGDRAAAAIAGALKAEALVLLSDVPGLLRDPPD--EGSLIERITPEEAEELSK-----AAGGGMKKKVLMA 232 (268)
T ss_pred CHHHHHHHHHHHcCCCEEEEEeCChhhccCCCC--CCcCccCcCHHHHHHHhh-----ccCCccHHHHHHH
Confidence 345556666666677888899999999976321 112222222333333322 2677777666554
No 326
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=47.56 E-value=77 Score=27.33 Aligned_cols=62 Identities=11% Similarity=-0.041 Sum_probs=36.1
Q ss_pred hHHHHHHhhcCCcEEEEEec-CCccccC-----cCCCCCCCCCHHHHHHHHHHhhcC-CEEEEcCCChh
Q 040896 9 TFDRMVAAAKGKKIVVFLDY-DGTLSPI-----VEDPDKAFMSDTMRMAVHEVAHFF-PTAIVSGRCLD 70 (288)
Q Consensus 9 ~~~~~~~~~~~~~~li~~Dl-DGTL~~~-----~~~~~~~~i~~~~~~aL~~L~~~~-~v~i~TGR~~~ 70 (288)
.++++.+.+.+.+.++.+|+ +|.+... ..+.-.........+.+++|.+.+ ..+++|++...
T Consensus 112 ~~~~~~~~~~~~~iv~slD~~~g~~~~~~~~~v~i~gw~~~~~~~~~~~~~~l~~~G~~~iivt~i~~~ 180 (254)
T TIGR00735 112 LIYELADRFGSQCIVVAIDAKRVYVNSYCWYEVYIYGGRESTGLDAVEWAKEVEKLGAGEILLTSMDKD 180 (254)
T ss_pred HHHHHHHHcCCCCEEEEEEeccCCCCCCccEEEEEeCCcccCCCCHHHHHHHHHHcCCCEEEEeCcCcc
Confidence 45556555655667788886 4544310 000001112345678888888875 78888998773
No 327
>TIGR02076 pyrH_arch uridylate kinase, putative. This family consists of the archaeal and spirochete proteins most closely related to bacterial uridylate kinases (TIGR02075), an enzyme involved in pyrimidine biosynthesis. Members are likely, but not known, to be functionally equivalent to their bacterial counterparts. However, substantial sequence differences suggest that regulatory mechanisms may be different; the bacterial form is allosterically regulated by GTP.
Probab=47.44 E-value=87 Score=26.26 Aligned_cols=31 Identities=10% Similarity=0.060 Sum_probs=23.3
Q ss_pred cchhhHHHHHHhhcCCcEEEEEecCCccccC
Q 040896 5 SALDTFDRMVAAAKGKKIVVFLDYDGTLSPI 35 (288)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~li~~DlDGTL~~~ 35 (288)
+.|.....+..+.+....++++|.||-+...
T Consensus 116 s~D~~A~~lA~~l~A~~li~ltdVdGvy~~d 146 (221)
T TIGR02076 116 TTDAVAALLAEFSKADLLINATNVDGVYDKD 146 (221)
T ss_pred CcHHHHHHHHHHcCCCEEEEEeCCCcccCCC
Confidence 4556666666667778888899999999753
No 328
>TIGR01178 ade adenine deaminase. The family described by this model includes an experimentally characterized adenine deaminase of Bacillus subtilis. It also include a member from Methanobacterium thermoautotrophicum, in which adenine deaminase activity has been detected.
Probab=46.86 E-value=58 Score=31.75 Aligned_cols=61 Identities=16% Similarity=0.115 Sum_probs=43.6
Q ss_pred eeEEEcCCcccHHHHHHHHhc---CCceEEEEecCCC-----CccceEEeC-ChhHHHHHHHHHHHHhhhCCC
Q 040896 224 LPLYIGDDKTDEDAFKVIRHM---GRGYPIIVSSVPR-----ETKALYSLR-DPDEVMSFLRRLARWKKSLGI 287 (288)
Q Consensus 224 ~vv~~GDs~ND~~Ml~~~~~~---~~g~~v~v~na~~-----~~~A~~~~~-~~~~v~~~l~~~~~~~~~~~~ 287 (288)
+++++|+ ||.+|..+++++ +.|+.+. .++.. -..|-...+ +.++|++.++++-+.-+++|.
T Consensus 445 niivvG~--~~~dm~~A~~~l~~~~GG~~~v-~~g~v~~~l~LpiaGlmS~~~~~~v~~~~~~l~~~~~~~G~ 514 (552)
T TIGR01178 445 NIIAVGS--NDEDLALAVNKLIQIGGGLCAA-KNGEVTIILPLPIAGLMSDDSAERVAEQIIALNDKCRNVGG 514 (552)
T ss_pred cEEEEEC--CHHHHHHHHHHHHHhCCcEEEE-ECCEEEEEecccccccccCCCHHHHHHHHHHHHHHHHHcCC
Confidence 9999998 789999999886 3356554 33322 245554433 578999999999888888885
No 329
>TIGR01106 ATPase-IIC_X-K sodium or proton efflux -- potassium uptake antiporter, P-type ATPase, alpha subunit. Sequences from Blastocladiella emersonii (GP|6636502, GP|6636502 and PIR|T43025), C. elegans (GP|2315419, GP|6671808 and PIR|T31763) and Drosophila melanogaster (GP|7291424) score below trusted cutoff, apparently due to long branch length (excessive divergence from the last common ancestor) as evidenced by a phylogenetic tree. Experimental evidence is needed to determine whether these sequences represent ATPases with conserved function. Aside from fragments, other sequences between trusted and noise appear to be bacterial ATPases of unclear lineage, but most likely calcium pumps.
Probab=46.06 E-value=25 Score=36.87 Aligned_cols=34 Identities=12% Similarity=-0.050 Sum_probs=30.2
Q ss_pred CCCHHHHHHHHHHhhcC-CEEEEcCCChhhHhhhc
Q 040896 43 FMSDTMRMAVHEVAHFF-PTAIVSGRCLDKVSRFV 76 (288)
Q Consensus 43 ~i~~~~~~aL~~L~~~~-~v~i~TGR~~~~l~~~~ 76 (288)
.+.+++.++|+++++.+ .|+++|||+...+..+.
T Consensus 568 plr~~v~~aI~~l~~~Gi~v~~~TGd~~~ta~~ia 602 (997)
T TIGR01106 568 PPRAAVPDAVGKCRSAGIKVIMVTGDHPITAKAIA 602 (997)
T ss_pred CChHHHHHHHHHHHHCCCeEEEECCCCHHHHHHHH
Confidence 56789999999999995 99999999999888763
No 330
>KOG0209 consensus P-type ATPase [Inorganic ion transport and metabolism]
Probab=45.42 E-value=16 Score=37.04 Aligned_cols=28 Identities=25% Similarity=0.347 Sum_probs=23.6
Q ss_pred eeEEEcCCcccHHHHHHHHhcCCceEEEEecCC
Q 040896 224 LPLYIGDDKTDEDAFKVIRHMGRGYPIIVSSVP 256 (288)
Q Consensus 224 ~vv~~GDs~ND~~Ml~~~~~~~~g~~v~v~na~ 256 (288)
.++..||+.||+..|+.+ -.||+.=|+.
T Consensus 808 ~TLMCGDGTNDVGALK~A-----hVGVALL~~~ 835 (1160)
T KOG0209|consen 808 VTLMCGDGTNDVGALKQA-----HVGVALLNNP 835 (1160)
T ss_pred EEEEecCCCcchhhhhhc-----ccceehhcCC
Confidence 789999999999999999 4787776654
No 331
>TIGR02075 pyrH_bact uridylate kinase. This protein, also called UMP kinase, converts UMP to UDP by adding a phosphate from ATP. It is the first step in pyrimidine biosynthesis. GTP is an allosteric activator. In a large fraction of all bacterial genomes, the gene tends to be located immediately downstream of elongation factor Ts and upstream of ribosome recycling factor. A related protein family, believed to be equivalent in function and found in the archaea and in spirochetes, is described by a separate model, TIGR02076.
Probab=45.35 E-value=57 Score=27.73 Aligned_cols=71 Identities=8% Similarity=-0.003 Sum_probs=43.2
Q ss_pred chhhHHHHHHhhcCCcEEEEEe-cCCccccCcC-CCCCCCCCHH-------------HHHHHHHHhhc-CCEEEEcCCCh
Q 040896 6 ALDTFDRMVAAAKGKKIVVFLD-YDGTLSPIVE-DPDKAFMSDT-------------MRMAVHEVAHF-FPTAIVSGRCL 69 (288)
Q Consensus 6 ~~~~~~~~~~~~~~~~~li~~D-lDGTL~~~~~-~~~~~~i~~~-------------~~~aL~~L~~~-~~v~i~TGR~~ 69 (288)
-|.....+..+.+.+..++++| .||-...+++ .|+...++.- -..+++-+.+. ..++|++|+..
T Consensus 137 ~D~~a~~lA~~l~a~~li~~td~VdGvy~~dp~~~~~a~~i~~i~~~e~~~~~~~~~d~~~~~~a~~~~i~v~i~~g~~~ 216 (233)
T TIGR02075 137 TDTAAALRAIEINADVILKGTNGVDGVYTADPKKNKDAKKYETITYNEALKKNLKVMDLTAFALARDNNLPIVVFNIDEP 216 (233)
T ss_pred chHHHHHHHHHcCCCEEEEeecccCeEEcCCCCCCCCCeECcEecHHHHHhcCHHHHHHHHHHHHHHCCCeEEEEeCCCc
Confidence 3555666677778888888999 9999886432 2221111110 12233333333 37888899888
Q ss_pred hhHhhhc
Q 040896 70 DKVSRFV 76 (288)
Q Consensus 70 ~~l~~~~ 76 (288)
..+.+.+
T Consensus 217 ~~l~~~l 223 (233)
T TIGR02075 217 GALKKVI 223 (233)
T ss_pred chHHHHH
Confidence 8887776
No 332
>KOG3085 consensus Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=45.00 E-value=26 Score=30.13 Aligned_cols=41 Identities=22% Similarity=0.304 Sum_probs=30.3
Q ss_pred HHHHHhcCCCCCCCceeEEEcCC-cccHHHHHHHHhcCCceEEEEecCC
Q 040896 209 EYLLDTFGFNNASDFLPLYIGDD-KTDEDAFKVIRHMGRGYPIIVSSVP 256 (288)
Q Consensus 209 ~~l~~~~~~~~~~~~~vv~~GDs-~ND~~Ml~~~~~~~~g~~v~v~na~ 256 (288)
+..++++++.++ +++.+||+ .||+.-=+.+ | -.++.|.|..
T Consensus 175 ~~al~~l~v~Pe---e~vhIgD~l~nD~~gA~~~---G-~~ailv~~~~ 216 (237)
T KOG3085|consen 175 QLALERLGVKPE---ECVHIGDLLENDYEGARNL---G-WHAILVDNSI 216 (237)
T ss_pred HHHHHHhCCChH---HeEEecCccccccHhHHHc---C-CEEEEEcccc
Confidence 455677888888 99999999 7887755555 2 3578888764
No 333
>cd00231 ZipA ZipA C-terminal domain. ZipA, a membrane-anchored protein, is one of at least nine essential gene products necessary for assembly of the septal ring which mediates cell division in E.coli. ZipA and FtsA directly bind FtsZ, a homolog of eukaryotic tubulins, at the prospective division site, followed by the sequential addition of FtsK, FtsQ, FtsL, FtsW, FtsI, and FtsN. ZipA contains three domains: a short N-terminal membrane-anchored domain, a central P/Q domain that is rich in proline and glutamine and a C-terminal domain, which comprises almost half the protein.
Probab=44.85 E-value=12 Score=29.01 Aligned_cols=42 Identities=24% Similarity=0.289 Sum_probs=31.3
Q ss_pred cchhhHHHHHHhhcCCcEEEEEecCCccccCcCCCCCCCCCHHHHHHHHH
Q 040896 5 SALDTFDRMVAAAKGKKIVVFLDYDGTLSPIVEDPDKAFMSDTMRMAVHE 54 (288)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~li~~DlDGTL~~~~~~~~~~~i~~~~~~aL~~ 54 (288)
.+...|+.|+..+. -++-+++|.|++. +...+++..++.+++
T Consensus 87 ~~~~~F~~Ml~~A~----~lA~~LgG~llDd----~r~~lt~~~~~~~R~ 128 (130)
T cd00231 87 DALQNFKLMLQAAQ----RIADDLGGVVLDD----QRRMMTPQKLRAYRD 128 (130)
T ss_pred cHHHHHHHHHHHHH----HHHHHcCCEEECC----CCCcCCHHHHHHHHh
Confidence 57788999999885 3667899999995 345577766666553
No 334
>cd04251 AAK_NAGK-UC AAK_NAGK-UC: N-Acetyl-L-glutamate kinase - uncharacterized (NAGK-UC). This domain is similar to Escherichia coli and Pseudomonas aeruginosa NAGKs which catalyze the phosphorylation of the gamma-COOH group of N-acetyl-L-glutamate (NAG) by ATP in the second step of microbial arginine biosynthesis. These uncharacterized domain sequences are found in some bacteria (Deinococci and Chloroflexi) and archea and belong to the Amino Acid Kinase Superfamily (AAK).
Probab=44.84 E-value=74 Score=27.54 Aligned_cols=30 Identities=17% Similarity=0.280 Sum_probs=21.9
Q ss_pred cchhhHHHHHHhhcCCcEEEEEecCCcccc
Q 040896 5 SALDTFDRMVAAAKGKKIVVFLDYDGTLSP 34 (288)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~li~~DlDGTL~~ 34 (288)
++|.....+..+....+.++++|.||-+.+
T Consensus 165 ~~D~~A~~lA~~L~A~~li~~tdv~Gv~~~ 194 (257)
T cd04251 165 DGDRAAAAIAAALKAERLILLTDVEGLYLD 194 (257)
T ss_pred CHHHHHHHHHHHcCCCEEEEEeCChhheeC
Confidence 355555666666677788899999998753
No 335
>PRK14557 pyrH uridylate kinase; Provisional
Probab=44.52 E-value=93 Score=26.86 Aligned_cols=71 Identities=8% Similarity=0.032 Sum_probs=41.1
Q ss_pred hhhHHHHHHhhcCCcEEEE-EecCCccccCc-CCCCCCCCCHH--------HHHHH-----HHHhhc-CCEEEEcCCChh
Q 040896 7 LDTFDRMVAAAKGKKIVVF-LDYDGTLSPIV-EDPDKAFMSDT--------MRMAV-----HEVAHF-FPTAIVSGRCLD 70 (288)
Q Consensus 7 ~~~~~~~~~~~~~~~~li~-~DlDGTL~~~~-~~~~~~~i~~~--------~~~aL-----~~L~~~-~~v~i~TGR~~~ 70 (288)
|.....+..+.+....+++ +|+||-...++ .+|+...++.- -.+.+ +-..+. .+++|++|+...
T Consensus 142 D~lAallA~~l~Ad~li~~ttdVdGvY~~DP~~~~~Ak~i~~i~~~e~~~~~~~~~~~~A~~~a~~~gi~v~I~ng~~~~ 221 (247)
T PRK14557 142 DYPSVQRAIEMNSDAILVAKQGVDGVFTSDPKHNKSAKMYRKLNYNDVVRQNIQVMDQAALLLARDYNLPAHVFNFDEPG 221 (247)
T ss_pred HHHHHHHHHHhCCCEEEEecCCcCEeECCCCCCCCCCEEeeEEChhhhcccCHHHHHHHHHHHHHHCCCcEEEEeCCCCh
Confidence 3344455555677767777 49999988643 22222221110 01222 323333 489999999999
Q ss_pred hHhhhcC
Q 040896 71 KVSRFVQ 77 (288)
Q Consensus 71 ~l~~~~~ 77 (288)
.+...+.
T Consensus 222 ~l~~~l~ 228 (247)
T PRK14557 222 VMRRICL 228 (247)
T ss_pred HHHHHHc
Confidence 8888773
No 336
>PRK12454 carbamate kinase-like carbamoyl phosphate synthetase; Reviewed
Probab=44.31 E-value=53 Score=29.51 Aligned_cols=67 Identities=7% Similarity=0.008 Sum_probs=41.8
Q ss_pred hhhHHHHHHhhcCCcEEEEEecCCccccCcCCCCCCCCCHHHHHHHHHHhhcCCEEEEcCCChhhHhhhc
Q 040896 7 LDTFDRMVAAAKGKKIVVFLDYDGTLSPIVEDPDKAFMSDTMRMAVHEVAHFFPTAIVSGRCLDKVSRFV 76 (288)
Q Consensus 7 ~~~~~~~~~~~~~~~~li~~DlDGTL~~~~~~~~~~~i~~~~~~aL~~L~~~~~v~i~TGR~~~~l~~~~ 76 (288)
|.....+..+.+....++++|.||...+.. +++...++.-..+.++++.+.+. +.||.+...+...+
T Consensus 215 D~aAa~LA~~L~AD~LIiLTdVdGVy~~~~-~p~~~~i~~It~~e~~~~i~~g~--~~~GgM~pKv~AA~ 281 (313)
T PRK12454 215 DLASELLAEELNADIFIILTDVEKVYLNYG-KPDQKPLDKVTVEEAKKYYEEGH--FKAGSMGPKILAAI 281 (313)
T ss_pred cHHHHHHHHHcCCCEEEEEeCCceeeCCCC-CCCCeEccccCHHHHHHHHhcCC--cCCCChHHHHHHHH
Confidence 455556666667888999999999998742 33333444433444555544443 35888877666654
No 337
>smart00775 LNS2 LNS2 domain. This domain is found in Saccharomyces cerevisiae protein SMP2, proteins with an N-terminal lipin domain and phosphatidylinositol transfer proteins. SMP2 is involved in plasmid maintenance and respiration. Lipin proteins are involved in adipose tissue development and insulin resistance.
Probab=44.30 E-value=35 Score=27.13 Aligned_cols=37 Identities=16% Similarity=0.081 Sum_probs=28.8
Q ss_pred CHHHHHHHHHHhcCCCCCCCceeEEEcCCcccHHHHHHH
Q 040896 203 DKGRALEYLLDTFGFNNASDFLPLYIGDDKTDEDAFKVI 241 (288)
Q Consensus 203 sKg~al~~l~~~~~~~~~~~~~vv~~GDs~ND~~Ml~~~ 241 (288)
=|...++.|.+.+.-.. ...+.+|||..+|+.+.+.+
T Consensus 102 ~K~~~l~~i~~~~~~~~--~~f~~~~gn~~~D~~~y~~~ 138 (157)
T smart00775 102 FKIACLRDIKSLFPPQG--NPFYAGFGNRITDVISYSAV 138 (157)
T ss_pred HHHHHHHHHHHhcCCCC--CCEEEEeCCCchhHHHHHHc
Confidence 48889999998875221 11677899999999999987
No 338
>smart00771 ZipA_C ZipA, C-terminal domain (FtsZ-binding). C-terminal domain of ZipA, a component of cell division in E.coli. It interacts with the FtsZ protein in one of the initial steps of septum formation. The structure of this domain is composed of three alpha-helices and a beta-sheet consisting of six antiparallel beta-strands.
Probab=44.26 E-value=12 Score=28.99 Aligned_cols=42 Identities=19% Similarity=0.211 Sum_probs=30.9
Q ss_pred ccchhhHHHHHHhhcCCcEEEEEecCCccccCcCCCCCCCCCHHHHHHHH
Q 040896 4 PSALDTFDRMVAAAKGKKIVVFLDYDGTLSPIVEDPDKAFMSDTMRMAVH 53 (288)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~li~~DlDGTL~~~~~~~~~~~i~~~~~~aL~ 53 (288)
+.+..-|+.|+..+. -++-+|||.|++. +...+++..++.++
T Consensus 87 ~~~~~~F~~M~~~A~----~lA~~L~g~llDd----~r~~lt~~~~~~~r 128 (131)
T smart00771 87 GDALQNFDLMLQTAR----RLADDLGGVVLDD----QRRPLTPQAIAEYR 128 (131)
T ss_pred CcHHHHHHHHHHHHH----HHHHHcCCEEECC----CCCcCCHHHHHHHH
Confidence 357888999999875 3567899999995 34456766666655
No 339
>cd04235 AAK_CK AAK_CK: Carbamate kinase (CK) catalyzes both the ATP-phosphorylation of carbamate and carbamoyl phosphate (CP) utilization with the production of ATP from ADP and CP. Both CK (this CD) and nonhomologous CP synthetase synthesize carbamoyl phosphate, an essential precursor of arginine and pyrimidine bases, in the presence of ATP, bicarbonate, and ammonia. CK is a homodimer of 33 kDa subunits and is a member of the Amino Acid Kinase Superfamily (AAK).
Probab=44.05 E-value=52 Score=29.51 Aligned_cols=67 Identities=10% Similarity=0.065 Sum_probs=43.8
Q ss_pred hhhHHHHHHhhcCCcEEEEEecCCccccCcCCCCCCCCCHHHHHHHHHHhhcCCEEEEcCCChhhHhhhc
Q 040896 7 LDTFDRMVAAAKGKKIVVFLDYDGTLSPIVEDPDKAFMSDTMRMAVHEVAHFFPTAIVSGRCLDKVSRFV 76 (288)
Q Consensus 7 ~~~~~~~~~~~~~~~~li~~DlDGTL~~~~~~~~~~~i~~~~~~aL~~L~~~~~v~i~TGR~~~~l~~~~ 76 (288)
|.....+....+....++++|.||-+.+.. +++...++.-..+.+.++.+.+. +.||.+...+...+
T Consensus 211 D~~AallA~~l~Ad~LiilTdVdGVy~~~~-~pda~~i~~Is~~e~~~l~~~g~--~~tGGM~pKv~aA~ 277 (308)
T cd04235 211 DLASALLAEEINADLLVILTDVDNVYINFG-KPNQKALEQVTVEELEKYIEEGQ--FAPGSMGPKVEAAI 277 (308)
T ss_pred cHHHHHHHHHcCCCEEEEEecCCeEECCCC-CCCCeEcCCcCHHHHHHHHhcCc--cccCCcHHHHHHHH
Confidence 555666666677788899999999998642 33333344433445555655543 46888888777654
No 340
>PF04354 ZipA_C: ZipA, C-terminal FtsZ-binding domain; InterPro: IPR007449 This entry represents the ZipA C-terminal domain. ZipA is an essential cell division protein involved in septum formation [, ]. Its C-terminal domain binds FtsZ, a major component of the bacterial septal ring []. The structure of this domain is an alpha-beta fold with three alpha helices and a beta sheet of six antiparallel beta strands. The major loops protruding from the beta sheet surface are thought to form a binding site for FtsZ [].; GO: 0000917 barrier septum formation, 0009276 Gram-negative-bacterium-type cell wall, 0016021 integral to membrane; PDB: 1Y2G_B 1S1S_A 1F46_A 1S1J_A 1F47_B 1F7W_A 1Y2F_A 1F7X_A.
Probab=44.01 E-value=8.4 Score=29.85 Aligned_cols=43 Identities=16% Similarity=0.318 Sum_probs=28.0
Q ss_pred ccchhhHHHHHHhhcCCcEEEEEecCCccccCcCCCCCCCCCHHHHHHHHH
Q 040896 4 PSALDTFDRMVAAAKGKKIVVFLDYDGTLSPIVEDPDKAFMSDTMRMAVHE 54 (288)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~li~~DlDGTL~~~~~~~~~~~i~~~~~~aL~~ 54 (288)
+.+...|+.|+..+. -++-+|+|+|++. ....+++..++.+++
T Consensus 87 ~~~~~~Fd~M~~~A~----~lA~~L~g~llD~----~r~~lt~~~~~~~R~ 129 (131)
T PF04354_consen 87 GDGLAAFDQMLETAR----QLAQELGGELLDD----NRSPLTEQTLEHIRQ 129 (131)
T ss_dssp S-HHHHHHHHHHHHH----HHHHHHT-EEEET----TSSB--HHHHHHHHH
T ss_pred CcHHHHHHHHHHHHH----HHHHHCCCEEECC----CCCcCCHHHHHHHHh
Confidence 467888999999885 2556899999995 344567666666553
No 341
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=43.77 E-value=86 Score=26.67 Aligned_cols=79 Identities=11% Similarity=0.010 Sum_probs=45.4
Q ss_pred hhHHHHHHhhcCCcEEEEEecC------CccccCcCCCCCCCCCHHHHHHHHHHhhcC-CEEEEcCCChh---------h
Q 040896 8 DTFDRMVAAAKGKKIVVFLDYD------GTLSPIVEDPDKAFMSDTMRMAVHEVAHFF-PTAIVSGRCLD---------K 71 (288)
Q Consensus 8 ~~~~~~~~~~~~~~~li~~DlD------GTL~~~~~~~~~~~i~~~~~~aL~~L~~~~-~v~i~TGR~~~---------~ 71 (288)
..|.++.....+.+..+.+|+- ++.....- ...-.....+.++++.+.+ ..+++||+... .
T Consensus 108 ~~~~~i~~~~~~~~i~~~ld~k~~~~~~~~v~~~~~---~~~~~~~~~~~~~~l~~~G~d~i~v~~i~~~g~~~g~~~~~ 184 (243)
T cd04731 108 ELIREIAKRFGSQCVVVSIDAKRRGDGGYEVYTHGG---RKPTGLDAVEWAKEVEELGAGEILLTSMDRDGTKKGYDLEL 184 (243)
T ss_pred HHHHHHHHHcCCCCEEEEEEeeecCCCceEEEEcCC---ceecCCCHHHHHHHHHHCCCCEEEEeccCCCCCCCCCCHHH
Confidence 4567777777655677788752 55543210 0112335677778887775 88888888752 2
Q ss_pred HhhhcCCCCeEEEccCce
Q 040896 72 VSRFVQLKNVVYAGSHGM 89 (288)
Q Consensus 72 l~~~~~~~~~~~i~~nGa 89 (288)
+.++....+.|+++.+|-
T Consensus 185 i~~i~~~~~~pvia~GGi 202 (243)
T cd04731 185 IRAVSSAVNIPVIASGGA 202 (243)
T ss_pred HHHHHhhCCCCEEEeCCC
Confidence 222222224567776654
No 342
>COG1576 Uncharacterized conserved protein [Function unknown]
Probab=43.71 E-value=83 Score=25.12 Aligned_cols=53 Identities=17% Similarity=0.127 Sum_probs=36.9
Q ss_pred HHHhhcCCcEEEEEecCCccccCcCCCCCCCCCHHHHHHHHHHhhcC-CEEEEcCCChhhHhhh
Q 040896 13 MVAAAKGKKIVVFLDYDGTLSPIVEDPDKAFMSDTMRMAVHEVAHFF-PTAIVSGRCLDKVSRF 75 (288)
Q Consensus 13 ~~~~~~~~~~li~~DlDGTL~~~~~~~~~~~i~~~~~~aL~~L~~~~-~v~i~TGR~~~~l~~~ 75 (288)
|..+......++.+|+.|.-++ |++.-+.|..+...+ .|+++=|-+...-..+
T Consensus 60 il~~i~~~~~vi~Ld~~Gk~~s----------Se~fA~~l~~~~~~G~~i~f~IGG~~Gl~~~~ 113 (155)
T COG1576 60 ILAAIPKGSYVVLLDIRGKALS----------SEEFADFLERLRDDGRDISFLIGGADGLSEAV 113 (155)
T ss_pred HHHhcCCCCeEEEEecCCCcCC----------hHHHHHHHHHHHhcCCeEEEEEeCcccCCHHH
Confidence 4444455669999999988776 467888888888776 6777666665444443
No 343
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A ....
Probab=42.46 E-value=21 Score=27.77 Aligned_cols=35 Identities=17% Similarity=0.218 Sum_probs=28.5
Q ss_pred CCCCHHHHHHHHHHhhc-CCEEEEcCCChhhHhhhc
Q 040896 42 AFMSDTMRMAVHEVAHF-FPTAIVSGRCLDKVSRFV 76 (288)
Q Consensus 42 ~~i~~~~~~aL~~L~~~-~~v~i~TGR~~~~l~~~~ 76 (288)
.++.+.+.++|++|++. .+++++|+.+...+...+
T Consensus 76 ~~~~~~~~~~L~~l~~~~~~~~i~Sn~~~~~~~~~l 111 (176)
T PF13419_consen 76 LQPYPGVRELLERLKAKGIPLVIVSNGSRERIERVL 111 (176)
T ss_dssp EEESTTHHHHHHHHHHTTSEEEEEESSEHHHHHHHH
T ss_pred cchhhhhhhhhhhcccccceeEEeecCCcccccccc
Confidence 35667889999999977 599999999998777654
No 344
>PRK09411 carbamate kinase; Reviewed
Probab=42.43 E-value=57 Score=29.07 Aligned_cols=63 Identities=13% Similarity=0.103 Sum_probs=38.9
Q ss_pred hhhHHHHHHhhcCCcEEEEEecCCccccCcCCCCCCCCCHHHHHHHHHHhhcCCEEEEcCCChhhHhhhc
Q 040896 7 LDTFDRMVAAAKGKKIVVFLDYDGTLSPIVEDPDKAFMSDTMRMAVHEVAHFFPTAIVSGRCLDKVSRFV 76 (288)
Q Consensus 7 ~~~~~~~~~~~~~~~~li~~DlDGTL~~~~~~~~~~~i~~~~~~aL~~L~~~~~v~i~TGR~~~~l~~~~ 76 (288)
|..-..+..+.+..+.+|++|.||.+.++. +|+...++.-..+.++++.. +||.+...++..+
T Consensus 203 D~~Aa~LA~~L~Ad~LIiLTDVdGV~~n~~-~p~~~~I~~it~~e~~~~~~------~~GgM~pKVeAA~ 265 (297)
T PRK09411 203 DLAAALLAEQINADGLVILTDADAVYENWG-TPQQRAIRHATPDELAPFAK------ADGAMGPKVTAVS 265 (297)
T ss_pred HHHHHHHHHHhCCCEEEEEeCchhhccCCC-CCCCcCCCCcCHHHHHHhcc------CCCCcHHHHHHHH
Confidence 444455555667788999999999998742 33333444433333444332 5888877776653
No 345
>PLN02458 transferase, transferring glycosyl groups
Probab=42.25 E-value=45 Score=30.06 Aligned_cols=36 Identities=19% Similarity=0.157 Sum_probs=27.1
Q ss_pred HHHHHHHHHHhcCCCCCCCceeEEEcCCcc--cHHHHHHHHhcC
Q 040896 204 KGRALEYLLDTFGFNNASDFLPLYIGDDKT--DEDAFKVIRHMG 245 (288)
Q Consensus 204 Kg~al~~l~~~~~~~~~~~~~vv~~GDs~N--D~~Ml~~~~~~~ 245 (288)
.-.||++|.++. .+ =|++|+|+.| |+++|+.++..+
T Consensus 190 RN~AL~~IR~h~-l~-----GVVyFADDdNtYsl~LFeEmR~ik 227 (346)
T PLN02458 190 RNLALRHIEHHK-LS-----GIVHFAGLSNVYDLDFFDEIRDIE 227 (346)
T ss_pred HHHHHHHHHhcC-cC-----ceEEEccCCCcccHHHHHHHhcCc
Confidence 446788877653 33 7899999988 999999987643
No 346
>COG0546 Gph Predicted phosphatases [General function prediction only]
Probab=41.43 E-value=28 Score=29.18 Aligned_cols=33 Identities=6% Similarity=0.036 Sum_probs=28.5
Q ss_pred CCHHHHHHHHHHhhcC-CEEEEcCCChhhHhhhc
Q 040896 44 MSDTMRMAVHEVAHFF-PTAIVSGRCLDKVSRFV 76 (288)
Q Consensus 44 i~~~~~~aL~~L~~~~-~v~i~TGR~~~~l~~~~ 76 (288)
+-+...++|.+|++.+ +++|+|+++...+...+
T Consensus 90 ~~~gv~e~L~~L~~~g~~l~i~T~k~~~~~~~~l 123 (220)
T COG0546 90 LFPGVKELLAALKSAGYKLGIVTNKPERELDILL 123 (220)
T ss_pred cCCCHHHHHHHHHhCCCeEEEEeCCcHHHHHHHH
Confidence 4567789999999996 99999999999888875
No 347
>KOG4549 consensus Magnesium-dependent phosphatase [General function prediction only]
Probab=39.89 E-value=65 Score=24.91 Aligned_cols=54 Identities=11% Similarity=0.093 Sum_probs=37.3
Q ss_pred cEEEEEecCCccccCcCCCC----CCCCCHHHHHHHHHHhhcC-CEEEEcCCChhhHhh
Q 040896 21 KIVVFLDYDGTLSPIVEDPD----KAFMSDTMRMAVHEVAHFF-PTAIVSGRCLDKVSR 74 (288)
Q Consensus 21 ~~li~~DlDGTL~~~~~~~~----~~~i~~~~~~aL~~L~~~~-~v~i~TGR~~~~l~~ 74 (288)
.+++.+|+|+||.+....+. .-.+-+..+..|..|++.+ ..+++|--+...+..
T Consensus 18 P~~vdthl~~pfkP~k~~~g~~g~e~~fY~Di~rIL~dLk~~GVtl~~ASRt~ap~iA~ 76 (144)
T KOG4549|consen 18 PRLVDTHLDYPFKPFKCECGSKGEEMIFYDDIRRILVDLKKLGVTLIHASRTMAPQIAS 76 (144)
T ss_pred eEEEEecccccccccccCcccCcceeeeccchhHHHHHHHhcCcEEEEecCCCCHHHHH
Confidence 47889999999987532211 1124567788999999995 788887766655444
No 348
>KOG3085 consensus Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=39.81 E-value=34 Score=29.44 Aligned_cols=16 Identities=31% Similarity=0.250 Sum_probs=14.1
Q ss_pred CCcEEEEEecCCcccc
Q 040896 19 GKKIVVFLDYDGTLSP 34 (288)
Q Consensus 19 ~~~~li~~DlDGTL~~ 34 (288)
...|+++||++|||+.
T Consensus 5 ~~iravtfD~~~tLl~ 20 (237)
T KOG3085|consen 5 MRIRAVTFDAGGTLLA 20 (237)
T ss_pred cceEEEEEeCCCceee
Confidence 4578999999999986
No 349
>KOG1476 consensus Beta-1,3-glucuronyltransferase B3GAT1/SQV-8 [Posttranslational modification, protein turnover, chaperones]
Probab=39.65 E-value=57 Score=29.23 Aligned_cols=38 Identities=24% Similarity=0.384 Sum_probs=26.8
Q ss_pred HHHHHHHHHhc-CC-CCCCCceeEEEcCCcc--cHHHHHHHHhcC
Q 040896 205 GRALEYLLDTF-GF-NNASDFLPLYIGDDKT--DEDAFKVIRHMG 245 (288)
Q Consensus 205 g~al~~l~~~~-~~-~~~~~~~vv~~GDs~N--D~~Ml~~~~~~~ 245 (288)
-.|+++|..+. +. ..+ =|++|+|+.| |+++|+..+..+
T Consensus 165 n~aL~~ir~~~~~~~~~~---GVVyFADDdN~YdleLF~eiR~v~ 206 (330)
T KOG1476|consen 165 NMALRWIRSRILRHHKLE---GVVYFADDDNTYDLELFEEIRNVK 206 (330)
T ss_pred HHHHHHHHHhcccccccc---eEEEEccCCcchhHHHHHHHhccc
Confidence 45777777443 21 223 8899999988 999999887654
No 350
>KOG2914 consensus Predicted haloacid-halidohydrolase and related hydrolases [General function prediction only]
Probab=39.24 E-value=19 Score=30.62 Aligned_cols=27 Identities=19% Similarity=0.142 Sum_probs=21.1
Q ss_pred HHhcCCCC-CCCceeEEEcCCcccHHHHHHH
Q 040896 212 LDTFGFNN-ASDFLPLYIGDDKTDEDAFKVI 241 (288)
Q Consensus 212 ~~~~~~~~-~~~~~vv~~GDs~ND~~Ml~~~ 241 (288)
++.+|.++ + .+++|.|+.+=+.+-..+
T Consensus 161 ~~~l~~~~~~---k~lVfeds~~Gv~aa~aa 188 (222)
T KOG2914|consen 161 AKRLGVPPPS---KCLVFEDSPVGVQAAKAA 188 (222)
T ss_pred HHhcCCCCcc---ceEEECCCHHHHHHHHhc
Confidence 34466665 5 999999999888887777
No 351
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=38.98 E-value=53 Score=27.42 Aligned_cols=53 Identities=25% Similarity=0.321 Sum_probs=38.3
Q ss_pred ccchhhHHHHHHhhcCCcEEEEEecCCccccCcCCCCCCCCCHHHHHHHHHHhhc-CCEEEEcCC
Q 040896 4 PSALDTFDRMVAAAKGKKIVVFLDYDGTLSPIVEDPDKAFMSDTMRMAVHEVAHF-FPTAIVSGR 67 (288)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~li~~DlDGTL~~~~~~~~~~~i~~~~~~aL~~L~~~-~~v~i~TGR 67 (288)
|++.+.|+.+....+... .|--+++ +-.+.+++....|.+|.+. +..|+|.|=
T Consensus 65 ~~~~~i~~~i~~~~~~~~------~~~v~ID-----EaQF~~~~~v~~l~~lad~lgi~Vi~~GL 118 (201)
T COG1435 65 PSDTDIFDEIAALHEKPP------VDCVLID-----EAQFFDEELVYVLNELADRLGIPVICYGL 118 (201)
T ss_pred CChHHHHHHHHhcccCCC------cCEEEEe-----hhHhCCHHHHHHHHHHHhhcCCEEEEecc
Confidence 567788888877654332 3444444 4668899999999999998 777888773
No 352
>TIGR00746 arcC carbamate kinase. The seed alignment for this model includes experimentally confirmed examples from a set of phylogenetically distinct species. In a neighbor-joining tree constructed from an alignment of candidate carbamate kinases and several acetylglutamate kinases, the latter group forms a clear outgroup which roots the tree of carbamate kinase-like proteins. This analysis suggests that in E. coli, the ArcC paralog YqeA may be a second isozyme, while the paralog YahI branches as an outlier and is less likely to be an authentic carbamate kinase. The homolog from Mycoplasma pneumoniae likewise branches outside the set containing known carbamate kinases and also scores below the trusted cutoff.
Probab=38.90 E-value=80 Score=28.34 Aligned_cols=61 Identities=13% Similarity=0.177 Sum_probs=35.5
Q ss_pred HHHHhhcCCcEEEEEecCCccccCcCCCCCCCCCHHHHHHHHHHhhcCCEEEEcCCChhhHhhh
Q 040896 12 RMVAAAKGKKIVVFLDYDGTLSPIVEDPDKAFMSDTMRMAVHEVAHFFPTAIVSGRCLDKVSRF 75 (288)
Q Consensus 12 ~~~~~~~~~~~li~~DlDGTL~~~~~~~~~~~i~~~~~~aL~~L~~~~~v~i~TGR~~~~l~~~ 75 (288)
.+..+.+....++++|.||-+.++ .+++...++.-..+.+.++..... +.||.+...+...
T Consensus 217 ~lA~~l~AD~LIiLTDVdGVy~~~-~~p~a~~i~~it~~e~~~~~~~g~--~~tGgM~~Kl~AA 277 (310)
T TIGR00746 217 KLAEEVNADILVILTDVDAVYINY-GKPDEKALREVTVEELEDYYKAGH--FAAGSMGPKVEAA 277 (310)
T ss_pred HHHHHhCCCEEEEEeCCCceeCCC-CCCCCcCCcCcCHHHHHHHHhcCC--cCCCCcHHHHHHH
Confidence 333344677788899999999863 233333344333344444443333 4578887766654
No 353
>PRK14556 pyrH uridylate kinase; Provisional
Probab=38.86 E-value=94 Score=26.95 Aligned_cols=67 Identities=9% Similarity=-0.032 Sum_probs=42.3
Q ss_pred HHHHHHhhcCCcEEEEEecCCccccCc-CCCCCCC---CC----------HHHHHHHHHHhhcC-CEEEEcCCChhhHhh
Q 040896 10 FDRMVAAAKGKKIVVFLDYDGTLSPIV-EDPDKAF---MS----------DTMRMAVHEVAHFF-PTAIVSGRCLDKVSR 74 (288)
Q Consensus 10 ~~~~~~~~~~~~~li~~DlDGTL~~~~-~~~~~~~---i~----------~~~~~aL~~L~~~~-~v~i~TGR~~~~l~~ 74 (288)
...+....+....++++|+||-...++ .+|+... ++ .--..+++.+.+.+ +++|..|+....+.+
T Consensus 156 AallA~~l~Ad~Lii~TdVDGVYd~DP~~~p~A~~i~~I~~~e~~~~~l~vmd~~A~~~a~~~gIpi~I~ng~~~~~L~~ 235 (249)
T PRK14556 156 ASLRAVEIGADALLKATTVNGVYDKDPNKYSDAKRFDKVTFSEVVSKELNVMDLGAFTQCRDFGIPIYVFDLTQPNALVD 235 (249)
T ss_pred HHHHHHHcCCCEEEEEeCCCccCCCCCCCCCCceEeeEEchhhhcccchHhHHHHHHHHHHHCCCcEEEECCCCchHHHH
Confidence 334444457788888999999987532 2222111 11 11134566666664 899999999988888
Q ss_pred hc
Q 040896 75 FV 76 (288)
Q Consensus 75 ~~ 76 (288)
.+
T Consensus 236 ~l 237 (249)
T PRK14556 236 AV 237 (249)
T ss_pred HH
Confidence 76
No 354
>KOG0205 consensus Plasma membrane H+-transporting ATPase [Inorganic ion transport and metabolism]
Probab=38.57 E-value=19 Score=35.52 Aligned_cols=61 Identities=18% Similarity=0.153 Sum_probs=44.8
Q ss_pred eEEEEeCCCCCCHHHHHHHHHHhcCCCCCCCceeEEEcCCcccHHHHHHHHhcCCceEEEEecCCCC--ccceEEeCC
Q 040896 192 KVMEIRPCIDWDKGRALEYLLDTFGFNNASDFLPLYIGDDKTDEDAFKVIRHMGRGYPIIVSSVPRE--TKALYSLRD 267 (288)
Q Consensus 192 ~~ieI~~~~~~sKg~al~~l~~~~~~~~~~~~~vv~~GDs~ND~~Ml~~~~~~~~g~~v~v~na~~~--~~A~~~~~~ 267 (288)
.|-.+.|. .|-.-+++|.++-. .+-.-||+.||-|.|+.+ ..|++|.++.+. ..++.|+..
T Consensus 564 gfAgVfpe---hKy~iV~~Lq~r~h-------i~gmtgdgvndapaLKkA-----digiava~atdaar~asdiVlte 626 (942)
T KOG0205|consen 564 GFAGVFPE---HKYEIVKILQERKH-------IVGMTGDGVNDAPALKKA-----DIGIAVADATDAARSASDIVLTE 626 (942)
T ss_pred CccccCHH---HHHHHHHHHhhcCc-------eecccCCCcccchhhccc-----ccceeeccchhhhcccccEEEcC
Confidence 34455665 77777777766532 445679999999999999 689999998763 577877764
No 355
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=37.91 E-value=63 Score=28.40 Aligned_cols=60 Identities=25% Similarity=0.342 Sum_probs=47.3
Q ss_pred eEEeCCceEEEEeCCCCCCHHHHHHHHHHhcCCCCCCCceeEEEcCCcccHHHHHHHHhcCCceEE
Q 040896 185 FRISGGKKVMEIRPCIDWDKGRALEYLLDTFGFNNASDFLPLYIGDDKTDEDAFKVIRHMGRGYPI 250 (288)
Q Consensus 185 ~~~~~~~~~ieI~~~~~~sKg~al~~l~~~~~~~~~~~~~vv~~GDs~ND~~Ml~~~~~~~~g~~v 250 (288)
+++..|.-++-|-|. |..|.+.++.+-+....+.. .+...|-+.+|++-.+.-.+. ||.+
T Consensus 22 l~I~~gef~vliGpS-GsGKTTtLkMINrLiept~G---~I~i~g~~i~~~d~~~LRr~I--GYvi 81 (309)
T COG1125 22 LTIEEGEFLVLIGPS-GSGKTTTLKMINRLIEPTSG---EILIDGEDISDLDPVELRRKI--GYVI 81 (309)
T ss_pred EEecCCeEEEEECCC-CCcHHHHHHHHhcccCCCCc---eEEECCeecccCCHHHHHHhh--hhhh
Confidence 556677677777788 99999999999888766544 899999999998888776654 5554
No 356
>TIGR01497 kdpB K+-transporting ATPase, B subunit. One sequence is apparently mis-annotated in the primary literature, but properly annotated by TIGR.
Probab=37.65 E-value=74 Score=31.91 Aligned_cols=57 Identities=9% Similarity=0.093 Sum_probs=42.3
Q ss_pred hcCCcEEEEEecCCccccCcCCCCCCCCCHHHHHHHHHHhhcC-CEEEEcCCChhhHhhh
Q 040896 17 AKGKKIVVFLDYDGTLSPIVEDPDKAFMSDTMRMAVHEVAHFF-PTAIVSGRCLDKVSRF 75 (288)
Q Consensus 17 ~~~~~~li~~DlDGTL~~~~~~~~~~~i~~~~~~aL~~L~~~~-~v~i~TGR~~~~l~~~ 75 (288)
++...+.+++-.|++++-.-. =...+.++..+++++|++.+ +++++||-.......+
T Consensus 422 a~~G~r~l~va~~~~~lG~i~--l~D~~Rp~a~eaI~~l~~~Gi~v~miTGD~~~ta~~i 479 (675)
T TIGR01497 422 ARQGGTPLVVCEDNRIYGVIY--LKDIVKGGIKERFAQLRKMGIKTIMITGDNRLTAAAI 479 (675)
T ss_pred HhCCCeEEEEEECCEEEEEEE--ecccchhHHHHHHHHHHHCCCEEEEEcCCCHHHHHHH
Confidence 455556666667888775211 12257889999999999996 8999999998877765
No 357
>PRK11033 zntA zinc/cadmium/mercury/lead-transporting ATPase; Provisional
Probab=37.38 E-value=77 Score=32.15 Aligned_cols=58 Identities=12% Similarity=0.158 Sum_probs=44.0
Q ss_pred hcCCcEEEEEecCCccccCcCCCCCCCCCHHHHHHHHHHhhcC-CEEEEcCCChhhHhhhc
Q 040896 17 AKGKKIVVFLDYDGTLSPIVEDPDKAFMSDTMRMAVHEVAHFF-PTAIVSGRCLDKVSRFV 76 (288)
Q Consensus 17 ~~~~~~li~~DlDGTL~~~~~~~~~~~i~~~~~~aL~~L~~~~-~v~i~TGR~~~~l~~~~ 76 (288)
.+...+.+++=.||+++-.-. =...+.++..++|++|++.+ .++++||.+......+.
T Consensus 544 ~~~g~~~v~va~~~~~~g~i~--l~d~~r~~a~~~i~~L~~~gi~~~llTGd~~~~a~~ia 602 (741)
T PRK11033 544 ESAGKTVVLVLRNDDVLGLIA--LQDTLRADARQAISELKALGIKGVMLTGDNPRAAAAIA 602 (741)
T ss_pred HhCCCEEEEEEECCEEEEEEE--EecCCchhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHH
Confidence 455667777778998774211 12357889999999999985 89999999998887764
No 358
>COG5663 Uncharacterized conserved protein [Function unknown]
Probab=36.78 E-value=17 Score=29.53 Aligned_cols=70 Identities=17% Similarity=0.218 Sum_probs=41.6
Q ss_pred eEEEEeCCCCCCHHHHHHHHHHhcCCCCCCCceeEEEcCCcccHHHHHH-HHhcCCceEEEEecCCC--CccceEE--eC
Q 040896 192 KVMEIRPCIDWDKGRALEYLLDTFGFNNASDFLPLYIGDDKTDEDAFKV-IRHMGRGYPIIVSSVPR--ETKALYS--LR 266 (288)
Q Consensus 192 ~~ieI~~~~~~sKg~al~~l~~~~~~~~~~~~~vv~~GDs~ND~~Ml~~-~~~~~~g~~v~v~na~~--~~~A~~~--~~ 266 (288)
..++|. +...|-.+++. +.++ ++|-|+.--..|+.. + |+.|..=|.+- +..++-+ ..
T Consensus 116 ~~l~i~--g~h~KV~~vrt----h~id-------lf~ed~~~na~~iAk~~-----~~~vilins~ynRkp~~~niiR~~ 177 (194)
T COG5663 116 DHLEIV--GLHHKVEAVRT----HNID-------LFFEDSHDNAGQIAKNA-----GIPVILINSPYNRKPAAKNIIRAN 177 (194)
T ss_pred hhhhhh--cccccchhhHh----hccC-------ccccccCchHHHHHHhc-----CCcEEEecCcccccchHHHHHHHH
Confidence 456776 36778555543 4454 677888655555444 3 77777666643 3333333 34
Q ss_pred ChhHHHHHHHHHH
Q 040896 267 DPDEVMSFLRRLA 279 (288)
Q Consensus 267 ~~~~v~~~l~~~~ 279 (288)
.+.++.+++...+
T Consensus 178 ~w~e~y~~vd~~~ 190 (194)
T COG5663 178 NWAEAYEWVDSRL 190 (194)
T ss_pred hHHHHHHHHHHHh
Confidence 6778888887544
No 359
>PRK12354 carbamate kinase; Reviewed
Probab=36.29 E-value=52 Score=29.46 Aligned_cols=64 Identities=11% Similarity=0.105 Sum_probs=39.2
Q ss_pred chhhHHHHHHhhcCCcEEEEEecCCccccCcCCCCCCCCCHHHHHHHHHHhhcCCEEEEcCCChhhHhhhc
Q 040896 6 ALDTFDRMVAAAKGKKIVVFLDYDGTLSPIVEDPDKAFMSDTMRMAVHEVAHFFPTAIVSGRCLDKVSRFV 76 (288)
Q Consensus 6 ~~~~~~~~~~~~~~~~~li~~DlDGTL~~~~~~~~~~~i~~~~~~aL~~L~~~~~v~i~TGR~~~~l~~~~ 76 (288)
+|..-..+..+.+....++++|+||-+.+.. .|+...++.-..+-++++ -.+||.+...+...+
T Consensus 205 ~D~~Aa~LA~~l~Ad~LiiLTdVdGVy~~~~-~p~~k~i~~it~~e~~~~------~f~~GgM~pKV~AA~ 268 (307)
T PRK12354 205 KDLAAALLAEQLDADLLLILTDVDAVYLDWG-KPTQRAIAQATPDELREL------GFAAGSMGPKVEAAC 268 (307)
T ss_pred ccHHHHHHHHHcCCCEEEEEeCCcceecCCC-CCCCeECCCCCHHHHHhh------CCCcCChHHHHHHHH
Confidence 4555666666677888999999999999743 233333333323333333 236777777666643
No 360
>PRK10027 cryptic adenine deaminase; Provisional
Probab=36.23 E-value=1e+02 Score=30.31 Aligned_cols=61 Identities=13% Similarity=0.114 Sum_probs=43.4
Q ss_pred eeEEEcCCcccHHHHHHHHhc---CCceEEEEecCCC-----CccceEEeC-ChhHHHHHHHHHHHHhhhCCC
Q 040896 224 LPLYIGDDKTDEDAFKVIRHM---GRGYPIIVSSVPR-----ETKALYSLR-DPDEVMSFLRRLARWKKSLGI 287 (288)
Q Consensus 224 ~vv~~GDs~ND~~Ml~~~~~~---~~g~~v~v~na~~-----~~~A~~~~~-~~~~v~~~l~~~~~~~~~~~~ 287 (288)
+++++|+ ||.+|..+++++ +.|+.+. .++.. -..|-...+ +.++|++.++++-..-+++|.
T Consensus 477 NiivvG~--~~~dm~~A~~~l~~~~GG~vvv-~~g~v~a~lpLpiaGlmS~~~~~~v~~~~~~l~~~~~~lG~ 546 (588)
T PRK10027 477 NIVVIGR--SAEEMALAVNQVIQDGGGLCVV-RNGQVQSHLPLPIAGLMSTDTAQSLAEQIDALKAAARECGP 546 (588)
T ss_pred cEEEEEC--CHHHHHHHHHHHHHhCCcEEEE-ECCEEEEEeccccccccCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 9999998 789999998885 3456554 44422 235554433 578999999999888778774
No 361
>cd04241 AAK_FomA-like AAK_FomA-like: This CD includes a fosfomycin biosynthetic gene product, FomA, and similar proteins found in a wide range of organisms. Together, the fomA and fomB genes in the fosfomycin biosynthetic gene cluster of Streptomyces wedmorensis confer high-level fosfomycin resistance. FomA and FomB proteins converted fosfomycin to fosfomycin monophosphate and fosfomycin diphosphate in the presence of ATP and a magnesium ion, indicating that FomA and FomB catalyzed phosphorylations of fosfomycin and fosfomycin monophosphate, respectively. FomA and related sequences in this CD are members of the Amino Acid Kinase Superfamily (AAK).
Probab=36.19 E-value=1.2e+02 Score=25.88 Aligned_cols=68 Identities=16% Similarity=0.248 Sum_probs=35.8
Q ss_pred chhhHHHHHHhhcCCcEEEEEecCCccccCcCCCCCCCCCHHHHHHHHHHhhc--CCEEEEcCCChhhHhhh
Q 040896 6 ALDTFDRMVAAAKGKKIVVFLDYDGTLSPIVEDPDKAFMSDTMRMAVHEVAHF--FPTAIVSGRCLDKVSRF 75 (288)
Q Consensus 6 ~~~~~~~~~~~~~~~~~li~~DlDGTL~~~~~~~~~~~i~~~~~~aL~~L~~~--~~v~i~TGR~~~~l~~~ 75 (288)
+|..-..+..+.+..+.++++|.||-+..++ |+...++.-..+.++++.+. ..-...||.+...+...
T Consensus 149 ~D~~A~~lA~~l~A~~li~ltdv~Gv~~~~P--~~~~~i~~i~~~~~~~~~~~~~~~~~~~tGGm~~Kl~aa 218 (252)
T cd04241 149 GDDIVVELAKALKPERVIFLTDVDGVYDKPP--PDAKLIPEIDVGSLEDILAALGSAGTDVTGGMAGKIEEL 218 (252)
T ss_pred hHHHHHHHHHHcCCCEEEEEeCCCeeECCCC--CCCeEcceeCccchHHHHHhcCcCCccccCCHHHHHHHH
Confidence 4444445555557778889999999987632 22222322222333333331 01123567776666554
No 362
>cd02115 AAK Amino Acid Kinases (AAK) superfamily, catalytic domain; present in such enzymes like N-acetylglutamate kinase (NAGK), carbamate kinase (CK), aspartokinase (AK), glutamate-5-kinase (G5K) and UMP kinase (UMPK). The AAK superfamily includes kinases that phosphorylate a variety of amino acid substrates. These kinases catalyze the formation of phosphoric anhydrides, generally with a carboxylate, and use ATP as the source of the phosphoryl group; are involved in amino acid biosynthesis. Some of these kinases control the process via allosteric feed-back inhibition.
Probab=35.68 E-value=84 Score=26.58 Aligned_cols=30 Identities=27% Similarity=0.352 Sum_probs=22.2
Q ss_pred chhhHHHHHHhhcCCcEEEEEecCCccccC
Q 040896 6 ALDTFDRMVAAAKGKKIVVFLDYDGTLSPI 35 (288)
Q Consensus 6 ~~~~~~~~~~~~~~~~~li~~DlDGTL~~~ 35 (288)
+|.....+..+.+.++.++++|.||-+...
T Consensus 152 sD~~A~~lA~~l~A~~li~~tdV~Gv~~~d 181 (248)
T cd02115 152 SDSTAALLAAALKADRLVILTDVDGVYTAD 181 (248)
T ss_pred HHHHHHHHHHHcCCCEEEEEecCCeeecCC
Confidence 344555566666778899999999998764
No 363
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=35.54 E-value=53 Score=27.97 Aligned_cols=48 Identities=15% Similarity=0.163 Sum_probs=33.5
Q ss_pred CcEEEEEecCCccccCcCCCCCCCCCHHHHHHHHHHhhcC-CEEEEcC--CChhhHhhhcC
Q 040896 20 KKIVVFLDYDGTLSPIVEDPDKAFMSDTMRMAVHEVAHFF-PTAIVSG--RCLDKVSRFVQ 77 (288)
Q Consensus 20 ~~~li~~DlDGTL~~~~~~~~~~~i~~~~~~aL~~L~~~~-~v~i~TG--R~~~~l~~~~~ 77 (288)
-..+++.|+|||+... +.+.+.++++.+.. .-+.++| |+.+.+..++.
T Consensus 43 ~~~l~ivDldga~~g~----------~~n~~~i~~i~~~~~~pv~~gGGIrs~edv~~l~~ 93 (228)
T PRK04128 43 VDKIHVVDLDGAFEGK----------PKNLDVVKNIIRETGLKVQVGGGLRTYESIKDAYE 93 (228)
T ss_pred CCEEEEEECcchhcCC----------cchHHHHHHHHhhCCCCEEEcCCCCCHHHHHHHHH
Confidence 4678889999998762 23577888888774 3355555 56677777764
No 364
>PRK05279 N-acetylglutamate synthase; Validated
Probab=34.95 E-value=72 Score=29.99 Aligned_cols=29 Identities=21% Similarity=0.391 Sum_probs=22.7
Q ss_pred cchhhHHHHHHhhcCCcEEEEEecCCccc
Q 040896 5 SALDTFDRMVAAAKGKKIVVFLDYDGTLS 33 (288)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~li~~DlDGTL~ 33 (288)
+||.....+..+.+..+.++++|.||.+-
T Consensus 188 ~~D~~a~~lA~~l~a~~lv~ltdv~GV~~ 216 (441)
T PRK05279 188 TMEEVATQVAIALKADKLIFFTESQGVLD 216 (441)
T ss_pred CHHHHHHHHHHHcCCCEEEEEECCCCccC
Confidence 46666777777777778889999999884
No 365
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=34.89 E-value=1.5e+02 Score=25.31 Aligned_cols=6 Identities=33% Similarity=0.467 Sum_probs=3.1
Q ss_pred EEEEEe
Q 040896 22 IVVFLD 27 (288)
Q Consensus 22 ~li~~D 27 (288)
.++.+|
T Consensus 126 ivvslD 131 (234)
T PRK13587 126 IYLSVD 131 (234)
T ss_pred EEEEEE
Confidence 445555
No 366
>CHL00202 argB acetylglutamate kinase; Provisional
Probab=34.78 E-value=86 Score=27.62 Aligned_cols=66 Identities=24% Similarity=0.310 Sum_probs=40.0
Q ss_pred chhhHHHHHHhhcCCcEEEEEecCCccccCcCCCCCCCCCHHHHHHHHHHhhcCCEEEEcCCChhhHhhhc
Q 040896 6 ALDTFDRMVAAAKGKKIVVFLDYDGTLSPIVEDPDKAFMSDTMRMAVHEVAHFFPTAIVSGRCLDKVSRFV 76 (288)
Q Consensus 6 ~~~~~~~~~~~~~~~~~li~~DlDGTL~~~~~~~~~~~i~~~~~~aL~~L~~~~~v~i~TGR~~~~l~~~~ 76 (288)
+|..-..+..+.+..+.++++|.||.+.+.. +| ...++.-..+.++++...+ .+||.+...++...
T Consensus 182 ~D~~A~~lA~~l~Ad~li~lTdv~Gv~~~~~-d~-~~~i~~i~~~e~~~l~~~g---~~tGGM~~Kl~aa~ 247 (284)
T CHL00202 182 ADVVAGEIAAKLNAEKLILLTDTPGILADIN-DP-NSLISTLNIKEARNLASTG---IISGGMIPKVNCCI 247 (284)
T ss_pred HHHHHHHHHHHhCCCEEEEEeCChhhcCCCC-CC-CCccccccHHHHHHHHhcC---CCCCCHHHHHHHHH
Confidence 4455555666667788889999999997531 11 2233333334455554433 46888888777753
No 367
>cd04260 AAK_AKi-DapG-BS AAK_AKi-DapG-BS: Amino Acid Kinase Superfamily (AAK), AKi-DapG; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the diaminopimelate-sensitive aspartokinase isoenzyme AKI (DapG), a monofunctional class enzyme found in Bacilli (Bacillus subtilis 168), Clostridia, and Actinobacteria bacterial species. In Bacillus subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The B. subtilis AKI is tetrameric consisting of two alpha and two bet
Probab=34.18 E-value=1.1e+02 Score=26.14 Aligned_cols=54 Identities=19% Similarity=0.212 Sum_probs=32.8
Q ss_pred cchhhHHHHHHhhcCCcEEEEEecCCccccCc-CCCCCCCCCHHHHHHHHHHhhc
Q 040896 5 SALDTFDRMVAAAKGKKIVVFLDYDGTLSPIV-EDPDKAFMSDTMRMAVHEVAHF 58 (288)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~li~~DlDGTL~~~~-~~~~~~~i~~~~~~aL~~L~~~ 58 (288)
++|.....+..+.+.+..++++|+||-+..++ ..++...++.-..+-+.+|...
T Consensus 155 ~sD~~A~~lA~~l~A~~l~~~tDV~GVy~~dP~~~~~a~~i~~i~~~e~~~l~~~ 209 (244)
T cd04260 155 GSDTTAAALGAALNAEYVEIYTDVDGIMTADPRVVPNARILDVVSYNEVFQMAHQ 209 (244)
T ss_pred chHHHHHHHHHHcCCCEEEEEECCCcCCcCCCCCCCCCeEcccCCHHHHHHHHHc
Confidence 35666666666667777779999999997532 1123334444344555555544
No 368
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=33.96 E-value=2.5e+02 Score=23.31 Aligned_cols=32 Identities=13% Similarity=0.062 Sum_probs=20.7
Q ss_pred CHHHHHHHHHHhhcC-CEEEEcCCChhhHhhhc
Q 040896 45 SDTMRMAVHEVAHFF-PTAIVSGRCLDKVSRFV 76 (288)
Q Consensus 45 ~~~~~~aL~~L~~~~-~v~i~TGR~~~~l~~~~ 76 (288)
++.+.++++.+++++ +++..||.+-..+.++.
T Consensus 122 s~~v~~a~~~Ak~~G~~vI~IT~~~~s~l~~l~ 154 (196)
T PRK10886 122 SRDIVKAVEAAVTRDMTIVALTGYDGGELAGLL 154 (196)
T ss_pred CHHHHHHHHHHHHCCCEEEEEeCCCCChhhhcc
Confidence 355677777777664 66777776666666554
No 369
>cd01295 AdeC Adenine deaminase (AdeC) directly deaminates adenine to form hypoxanthine. This reaction is part of one of the adenine salvage pathways, as well as the degradation pathway. It is important for adenine utilization as a purine, as well as a nitrogen source in bacteria and archea.
Probab=33.93 E-value=1.1e+02 Score=28.59 Aligned_cols=61 Identities=25% Similarity=0.263 Sum_probs=42.8
Q ss_pred eeEEEcCCcccHHHHHHHHhc---CCceEEEEecCCC-----CccceEEeC-ChhHHHHHHHHHHHHhhhCCC
Q 040896 224 LPLYIGDDKTDEDAFKVIRHM---GRGYPIIVSSVPR-----ETKALYSLR-DPDEVMSFLRRLARWKKSLGI 287 (288)
Q Consensus 224 ~vv~~GDs~ND~~Ml~~~~~~---~~g~~v~v~na~~-----~~~A~~~~~-~~~~v~~~l~~~~~~~~~~~~ 287 (288)
+++++|+ ||.+|..+++++ +.|+.+ +.++.. -..|-...+ +.++|++.++++-..-++.|.
T Consensus 324 n~~~~g~--~~~~~~~a~~~~~~~~gg~~~-~~~~~~~~~~~l~~~g~~s~~~~~~~~~~~~~~~~~~~~~g~ 393 (422)
T cd01295 324 NIIVIGT--NDEDMALAVNRLKEIGGGIVV-VKNGKVLAELPLPIAGLMSDEPAEEVAEELKKLREALRELGY 393 (422)
T ss_pred cEEEEEC--CHHHHHHHHHHHHHhCCcEEE-EECCEEEEEeccccccccCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 9999998 789999998886 335554 344432 134544333 478899999999887777774
No 370
>PF02533 PsbK: Photosystem II 4 kDa reaction centre component; InterPro: IPR003687 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbK found in PSII, where it is tightly associated with the antenna protein CP43 (PsbC). PsbK is required for accumulation of the PSII complex, and may participate in the assembly and stability of the PSII complex. In particular, PsbK may be involved in the binding of plastoquinone and in maintaining the dimeric organisation of PSII [, ].; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center; PDB: 4FBY_K 3PRQ_K 1IZL_W 3BZ1_K 2AXT_K 1S5L_K 3PRR_K 3BZ2_K 3KZI_K 3A0B_k ....
Probab=33.88 E-value=20 Score=21.58 Aligned_cols=16 Identities=44% Similarity=0.615 Sum_probs=10.1
Q ss_pred CCCccchhhHHHHHHh
Q 040896 1 AKHPSALDTFDRMVAA 16 (288)
Q Consensus 1 ~~~~~~~~~~~~~~~~ 16 (288)
+|+|||-..|+-+++.
T Consensus 5 aklPEaYa~f~PiVDv 20 (42)
T PF02533_consen 5 AKLPEAYAIFDPIVDV 20 (42)
T ss_dssp ----GGGGGGHHHHCC
T ss_pred HHCHHHHHhhhhHHHh
Confidence 5899999999988764
No 371
>COG0241 HisB Histidinol phosphatase and related phosphatases [Amino acid transport and metabolism]
Probab=33.64 E-value=48 Score=27.26 Aligned_cols=36 Identities=22% Similarity=0.198 Sum_probs=28.8
Q ss_pred CHHHHHHHHHHhcCCCCCCCceeEEEcCCcccHHHHHHH
Q 040896 203 DKGRALEYLLDTFGFNNASDFLPLYIGDDKTDEDAFKVI 241 (288)
Q Consensus 203 sKg~al~~l~~~~~~~~~~~~~vv~~GDs~ND~~Ml~~~ 241 (288)
=|..-+..+++.++++.. ..+++||...|+..=..+
T Consensus 106 P~~gm~~~~~~~~~iD~~---~s~~VGD~~~Dlq~a~n~ 141 (181)
T COG0241 106 PKPGMLLSALKEYNIDLS---RSYVVGDRLTDLQAAENA 141 (181)
T ss_pred CChHHHHHHHHHhCCCcc---ceEEecCcHHHHHHHHHC
Confidence 466677888888888887 999999999997755554
No 372
>cd04255 AAK_UMPK-MosAB AAK_UMPK-MosAB: This CD includes the alpha and beta subunits of the Mo storage protein (MosA and MosB) which are related to uridine monophosphate kinase (UMPK) enzymes that catalyze the phosphorylation of UMP by ATP, yielding UDP, and playing a key role in pyrimidine nucleotide biosynthesis. The Mo storage protein from the nitrogen-fixing bacterium, Azotobacter vinelandii, is characterized as an alpha4-beta4 octamer containing a polynuclear molybdenum-oxide cluster which is ATP-dependent to bind Mo and pH-dependent to release Mo. These and related bacterial sequences in this CD are members of the Amino Acid Kinase Superfamily (AAK).
Probab=33.26 E-value=2.1e+02 Score=24.92 Aligned_cols=29 Identities=10% Similarity=0.077 Sum_probs=21.7
Q ss_pred chhhHHHHHHhhcCCcEEEEEecCCcccc
Q 040896 6 ALDTFDRMVAAAKGKKIVVFLDYDGTLSP 34 (288)
Q Consensus 6 ~~~~~~~~~~~~~~~~~li~~DlDGTL~~ 34 (288)
+|..-..+..+.+....++++|+||-+..
T Consensus 163 ~D~~Aa~lA~~l~ad~li~~TdVdGVy~~ 191 (262)
T cd04255 163 TDVGAFLLAEVIGARNLIFVKDEDGLYTA 191 (262)
T ss_pred cHHHHHHHHHHhCCCEEEEEeccCeeECC
Confidence 45555556666677888899999999874
No 373
>PF12447 DUF3683: Protein of unknown function (DUF3683); InterPro: IPR022153 This domain family is found in bacteria, and is approximately 120 amino acids in length. The family is found in association with PF02754 from PFAM, PF01565 from PFAM, PF02913 from PFAM.
Probab=32.61 E-value=65 Score=24.19 Aligned_cols=30 Identities=10% Similarity=0.085 Sum_probs=25.1
Q ss_pred CCHHHHHHHHHHhhcCCEEEEcCCChhhHhhhcC
Q 040896 44 MSDTMRMAVHEVAHFFPTAIVSGRCLDKVSRFVQ 77 (288)
Q Consensus 44 i~~~~~~aL~~L~~~~~v~i~TGR~~~~l~~~~~ 77 (288)
+-+++.+.|.+|+..- .||||...+.+++|
T Consensus 24 LG~~~w~~L~eLR~~R----~TGRSARmL~evlG 53 (115)
T PF12447_consen 24 LGEEAWRLLEELRGER----RTGRSARMLFEVLG 53 (115)
T ss_pred cCHHHHHHHHHHHHcc----cccHHHHHHHHHhc
Confidence 3567888999998763 59999999999997
No 374
>PRK04570 cell division protein ZipA; Provisional
Probab=32.55 E-value=25 Score=29.98 Aligned_cols=41 Identities=15% Similarity=0.241 Sum_probs=30.1
Q ss_pred cchhhHHHHHHhhcCCcEEEEEecCCccccCcCCCCCCCCCHHHHHHHH
Q 040896 5 SALDTFDRMVAAAKGKKIVVFLDYDGTLSPIVEDPDKAFMSDTMRMAVH 53 (288)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~li~~DlDGTL~~~~~~~~~~~i~~~~~~aL~ 53 (288)
.|+.-|+.|+.++. .++-||||.+++. ....+++..++..+
T Consensus 182 da~~aFd~ML~tAq----~lA~eLgG~VLDe----~R~~lT~Q~iehyR 222 (243)
T PRK04570 182 TALDAWEKMLPTVQ----RMAELLDGVVLDD----SRNALGRQRIAHIR 222 (243)
T ss_pred cHHHHHHHHHHHHH----HHHHHcCCEEecC----CcccCCHHHHHHHH
Confidence 67788999998875 4678999999995 34456766655444
No 375
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=32.05 E-value=64 Score=23.98 Aligned_cols=46 Identities=11% Similarity=0.281 Sum_probs=34.6
Q ss_pred cCCcEEEEEecCCccccCcCCCCCCCCCHHHHHHHHHHhhcC-CEEEEcCCChhhHhhhc
Q 040896 18 KGKKIVVFLDYDGTLSPIVEDPDKAFMSDTMRMAVHEVAHFF-PTAIVSGRCLDKVSRFV 76 (288)
Q Consensus 18 ~~~~~li~~DlDGTL~~~~~~~~~~~i~~~~~~aL~~L~~~~-~v~i~TGR~~~~l~~~~ 76 (288)
++...+|++...|. +.+..+.++.+++++ +++.+|+.+-..+.+.-
T Consensus 52 ~~~d~vi~is~sg~-------------~~~~~~~~~~ak~~g~~vi~iT~~~~~~l~~~a 98 (131)
T PF01380_consen 52 DPDDLVIIISYSGE-------------TRELIELLRFAKERGAPVILITSNSESPLARLA 98 (131)
T ss_dssp STTEEEEEEESSST-------------THHHHHHHHHHHHTTSEEEEEESSTTSHHHHHS
T ss_pred cccceeEeeecccc-------------chhhhhhhHHHHhcCCeEEEEeCCCCCchhhhC
Confidence 44556666666543 467899999999885 89999998888877765
No 376
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=31.87 E-value=70 Score=27.17 Aligned_cols=36 Identities=17% Similarity=0.041 Sum_probs=27.2
Q ss_pred CHHHHHHHHHHhcCCC-CCCCceeEEEcCC-cccHHHHHHH
Q 040896 203 DKGRALEYLLDTFGFN-NASDFLPLYIGDD-KTDEDAFKVI 241 (288)
Q Consensus 203 sKg~al~~l~~~~~~~-~~~~~~vv~~GDs-~ND~~Ml~~~ 241 (288)
=+....+.+++.++.. .+ +++++||+ .+|+.+=..+
T Consensus 196 P~~~~~~~~~~~~~~~~~~---~~~~vGD~~~~Di~~a~~~ 233 (242)
T TIGR01459 196 PYPAIFHKALKECSNIPKN---RMLMVGDSFYTDILGANRL 233 (242)
T ss_pred CCHHHHHHHHHHcCCCCcc---cEEEECCCcHHHHHHHHHC
Confidence 3455677788888754 45 89999999 6998876665
No 377
>cd04249 AAK_NAGK-NC AAK_NAGK-NC: N-Acetyl-L-glutamate kinase - noncyclic (NAGK-NC) catalyzes the phosphorylation of the gamma-COOH group of N-acetyl-L-glutamate (NAG) by ATP in the second step of microbial arginine biosynthesis using the acetylated, noncyclic route of ornithine biosynthesis. There are two variants of this pathway. In one, typified by the pathway in Escherichia coli, glutamate is acetylated by acetyl-CoA and acetylornithine is deacylated hydrolytically. In this pathway, feedback inhibition by arginine occurs at the initial acetylation of glutamate and not at the phosphorylation of NAG by NAGK. Homodimeric NAGK-NC are members of the Amino Acid Kinase Superfamily (AAK).
Probab=30.98 E-value=1.3e+02 Score=25.90 Aligned_cols=28 Identities=18% Similarity=0.266 Sum_probs=19.8
Q ss_pred chhhHHHHHHhhcCCcEEEEEecCCcccc
Q 040896 6 ALDTFDRMVAAAKGKKIVVFLDYDGTLSP 34 (288)
Q Consensus 6 ~~~~~~~~~~~~~~~~~li~~DlDGTL~~ 34 (288)
+|.....+..+.+.+ .++++|.||.+..
T Consensus 157 ~D~~A~~lA~~l~A~-~i~ltdv~Gv~~~ 184 (252)
T cd04249 157 ADQAATAIAQLLNAD-LVLLSDVSGVLDA 184 (252)
T ss_pred HHHHHHHHHHHcCCC-EEEEeCCcccCCC
Confidence 455555566566666 6899999999864
No 378
>PRK12352 putative carbamate kinase; Reviewed
Probab=30.75 E-value=1.2e+02 Score=27.31 Aligned_cols=60 Identities=8% Similarity=0.039 Sum_probs=38.2
Q ss_pred HHHhhcCCcEEEEEecCCccccCcCCCCCCCCCHHHHHHHHHHhhcCCEEEEcCCChhhHhhh
Q 040896 13 MVAAAKGKKIVVFLDYDGTLSPIVEDPDKAFMSDTMRMAVHEVAHFFPTAIVSGRCLDKVSRF 75 (288)
Q Consensus 13 ~~~~~~~~~~li~~DlDGTL~~~~~~~~~~~i~~~~~~aL~~L~~~~~v~i~TGR~~~~l~~~ 75 (288)
+..+.+..+.++++|.||-+.+.. +++...++.-+.+.++++.+.+. +.+|.+...+...
T Consensus 223 iA~aL~AdkLI~LTDV~GV~~d~~-~~~~~li~~lt~~e~~~li~~g~--i~~GgM~pKl~aA 282 (316)
T PRK12352 223 LAREIHADILVITTGVEKVCIHFG-KPQQQALDRVDIATMTRYMQEGH--FPPGSMLPKIIAS 282 (316)
T ss_pred HHHHhCCCEEEEEeCchhhccCCC-CCCcccccccCHHHHHHHHhcCC--cCCCCCHHHHHHH
Confidence 444457778999999999998642 22333455545555666665543 4467777766654
No 379
>TIGR01512 ATPase-IB2_Cd heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase. .
Probab=30.66 E-value=85 Score=30.42 Aligned_cols=54 Identities=17% Similarity=0.162 Sum_probs=40.6
Q ss_pred cEEEEEecCCccccCcCCCCCCCCCHHHHHHHHHHhhc-C-CEEEEcCCChhhHhhhc
Q 040896 21 KIVVFLDYDGTLSPIVEDPDKAFMSDTMRMAVHEVAHF-F-PTAIVSGRCLDKVSRFV 76 (288)
Q Consensus 21 ~~li~~DlDGTL~~~~~~~~~~~i~~~~~~aL~~L~~~-~-~v~i~TGR~~~~l~~~~ 76 (288)
...++.-.||++...-. -...+.+...++|++|++. . +++++||.+........
T Consensus 342 ~~~~~v~~~~~~~g~i~--~~d~l~~~~~e~i~~L~~~Gi~~v~vvTgd~~~~a~~i~ 397 (536)
T TIGR01512 342 KTIVHVARDGTYLGYIL--LSDEPRPDAAEAIAELKALGIEKVVMLTGDRRAVAERVA 397 (536)
T ss_pred CeEEEEEECCEEEEEEE--EeccchHHHHHHHHHHHHcCCCcEEEEcCCCHHHHHHHH
Confidence 35566667787765321 1335788999999999998 5 79999999998887764
No 380
>cd04234 AAK_AK AAK_AK: Amino Acid Kinase Superfamily (AAK), Aspartokinase (AK); this CD includes the N-terminal catalytic domain of aspartokinase (4-L-aspartate-4-phosphotransferase;). AK is the first enzyme in the biosynthetic pathway of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. It also catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind amino acids leading to allosteric regulation of the enzyme. In Escherichia coli, three different aspartokinase isoenzymes are regulated specifically by lysine, methionine, and threonine. AK-HSDHI (ThrA) and AK-HSDHII (MetL) are bifunctional enzymes that consist of an N-terminal AK and a C-terminal homoserine dehyd
Probab=30.30 E-value=1e+02 Score=25.99 Aligned_cols=54 Identities=17% Similarity=0.170 Sum_probs=34.5
Q ss_pred chhhHHHHHHhhcCCcEEEEEecCCccccC-cCCCCCCCCCHHHHHHHHHHhhcC
Q 040896 6 ALDTFDRMVAAAKGKKIVVFLDYDGTLSPI-VEDPDKAFMSDTMRMAVHEVAHFF 59 (288)
Q Consensus 6 ~~~~~~~~~~~~~~~~~li~~DlDGTL~~~-~~~~~~~~i~~~~~~aL~~L~~~~ 59 (288)
+|.....+..+.+.+..++.+|+||-+..+ ..+++...++.-..+.+.+|...+
T Consensus 138 sD~~A~~lA~~l~A~~l~~~tdV~Gvy~~dP~~~~~a~~i~~i~~~e~~~l~~~G 192 (227)
T cd04234 138 SDYSAAALAAALGADEVEIWTDVDGIYTADPRIVPEARLIPEISYDEALELAYFG 192 (227)
T ss_pred cHHHHHHHHHHhCCCEEEEEECCCccCCCCCCCCCCceEcCcCCHHHHHHHHhCC
Confidence 566666666667888899999999999643 223333445554455556665543
No 381
>PF01282 Ribosomal_S24e: Ribosomal protein S24e; InterPro: IPR001976 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family contains the S24e ribosomal proteins from eukaryotes and archaebacteria. These proteins have 101 to 148 amino acids.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2V94_B 1YWX_A 2G1D_A 3IZ6_U 1XN9_A 2XZM_P 2XZN_P 3U5G_Y 3J16_D 3IZB_U ....
Probab=30.22 E-value=1.1e+02 Score=21.55 Aligned_cols=33 Identities=15% Similarity=0.107 Sum_probs=23.6
Q ss_pred EEEeCC--CCCCHHHHHHHHHHhcCCCCCCCceeEEEc
Q 040896 194 MEIRPC--IDWDKGRALEYLLDTFGFNNASDFLPLYIG 229 (288)
Q Consensus 194 ieI~~~--~~~sKg~al~~l~~~~~~~~~~~~~vv~~G 229 (288)
++|..+ ...+|...-.+|+++++.+.+ .|+.+|
T Consensus 3 ~~v~h~g~~Tpsr~ei~~klA~~~~~~~~---~ivv~~ 37 (84)
T PF01282_consen 3 FEVLHPGKPTPSRKEIREKLAAMLNVDPD---LIVVFG 37 (84)
T ss_dssp EEEE-SSSSS--HHHHHHHHHHHHTSTGC---CEEEEE
T ss_pred EEEECCCCCCCCHHHHHHHHHHHhCCCCC---eEEEec
Confidence 455554 137899999999999999876 877776
No 382
>cd04240 AAK_UC AAK_UC: Uncharacterized (UC) amino acid kinase-like proteins found mainly in archaea and a few bacteria. Sequences in this CD are members of the Amino Acid Kinase (AAK) superfamily.
Probab=29.73 E-value=1.4e+02 Score=24.79 Aligned_cols=70 Identities=13% Similarity=0.120 Sum_probs=38.6
Q ss_pred cchhhHHHHHHhhcCCcEEEEEecCCccccCcCCCCCCCCCHHH------HH-HHHHH-hhc-CCEEEEcCCChhhHhhh
Q 040896 5 SALDTFDRMVAAAKGKKIVVFLDYDGTLSPIVEDPDKAFMSDTM------RM-AVHEV-AHF-FPTAIVSGRCLDKVSRF 75 (288)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~li~~DlDGTL~~~~~~~~~~~i~~~~------~~-aL~~L-~~~-~~v~i~TGR~~~~l~~~ 75 (288)
++|.....+..+.+..+.++++|.||-.....+ --.+++... .+ ++-++ .+. ..++|+.|+....+...
T Consensus 115 ttD~lAa~lA~~l~A~~Li~ltdVdGVy~~da~--~i~~i~~~e~~~~~~id~~~~~~~~~~gi~v~I~~g~~~~~l~~~ 192 (203)
T cd04240 115 TSDSIAAWLAKKLGAKRLVIVTDVDGIYEKDGK--LVNEIAAAELLGETSVDPAFPRLLTKYGIRCYVVNGDDPERVLAA 192 (203)
T ss_pred CHHHHHHHHHHHcCCCEEEEEeCCccccCCCCc--CccccCHHHhCCCCeehhhHHHHHHhCCCeEEEECCCCccHHHHH
Confidence 455555666666677788889999998753100 001122110 01 12233 333 37888888877666665
Q ss_pred c
Q 040896 76 V 76 (288)
Q Consensus 76 ~ 76 (288)
+
T Consensus 193 l 193 (203)
T cd04240 193 L 193 (203)
T ss_pred H
Confidence 4
No 383
>PRK12353 putative amino acid kinase; Reviewed
Probab=29.66 E-value=1.1e+02 Score=27.50 Aligned_cols=66 Identities=9% Similarity=0.078 Sum_probs=37.1
Q ss_pred hhhHHHHHHhhcCCcEEEEEecCCccccCcCCCCCCCCCHHHHHHHHHHhhcCCEEEEcCCChhhHhhh
Q 040896 7 LDTFDRMVAAAKGKKIVVFLDYDGTLSPIVEDPDKAFMSDTMRMAVHEVAHFFPTAIVSGRCLDKVSRF 75 (288)
Q Consensus 7 ~~~~~~~~~~~~~~~~li~~DlDGTL~~~~~~~~~~~i~~~~~~aL~~L~~~~~v~i~TGR~~~~l~~~ 75 (288)
|..-..+..+.+..+.++++|.||-+.++. +++...++.-..+.+.++.... .+.||.....+...
T Consensus 215 D~lAa~lA~~l~Ad~Li~lTdvdGVy~~~~-~~~a~~i~~i~~~e~~~~~~~~--~~~tGGM~~Kl~aA 280 (314)
T PRK12353 215 DFASAKLAELVDADLLIILTAVDKVYINFG-KPNQKKLDEVTVSEAEKYIEEG--QFAPGSMLPKVEAA 280 (314)
T ss_pred HHHHHHHHHHhCCCEEEEEeCCccccCCCC-CCCCeECcCcCHHHHHHHHhcC--CcCCCCcHHHHHHH
Confidence 333444444456778889999999998532 2332333332233444554333 24688777765554
No 384
>TIGR00071 hisT_truA pseudouridylate synthase I. universal so far, single copy in all prokaryotes, 3 in yeast. Trusted cutoff for orthology is about 100 based on 1 match only in complete prokaryote with length 200.
Probab=29.44 E-value=79 Score=26.88 Aligned_cols=55 Identities=22% Similarity=0.298 Sum_probs=38.1
Q ss_pred cEEEEEecCCcccc-CcCCCCCCCCCHHHHHHHHHHhhcCCEEEEcCCChhhHhhh
Q 040896 21 KIVVFLDYDGTLSP-IVEDPDKAFMSDTMRMAVHEVAHFFPTAIVSGRCLDKVSRF 75 (288)
Q Consensus 21 ~~li~~DlDGTL~~-~~~~~~~~~i~~~~~~aL~~L~~~~~v~i~TGR~~~~l~~~ 75 (288)
+.++.+=+|||=.. .-.+++...+...+.++|.++.....-++.+||.=..+-..
T Consensus 2 ~~~l~i~YdGt~f~G~Q~Q~~~~TVq~~le~aL~~~~~~~i~~~~agRTD~GVHA~ 57 (227)
T TIGR00071 2 KIALKIAYDGSNYHGWQRQPNKRTVQGELEKALEAIGKKKITIMSAGRTDKGVHAM 57 (227)
T ss_pred eEEEEEEEcCCCeeEEeECcCCCCHHHHHHHHHHHHhCCCeeEEeeccCcCCcccc
Confidence 34677889999663 22334456788889999999876544577899987655543
No 385
>PLN02418 delta-1-pyrroline-5-carboxylate synthase
Probab=28.96 E-value=2e+02 Score=29.15 Aligned_cols=30 Identities=10% Similarity=0.104 Sum_probs=21.1
Q ss_pred chhhHHHHHHhhcCCcEEEEEecCCccccC
Q 040896 6 ALDTFDRMVAAAKGKKIVVFLDYDGTLSPI 35 (288)
Q Consensus 6 ~~~~~~~~~~~~~~~~~li~~DlDGTL~~~ 35 (288)
.|..-..+..+.+....++++|+||-+..+
T Consensus 177 ~D~~A~~lA~~l~Ad~li~~TdVdGvy~~~ 206 (718)
T PLN02418 177 NDSLAALLALELKADLLILLSDVEGLYTGP 206 (718)
T ss_pred cHHHHHHHHHHcCCCEEEEeecCCeeecCC
Confidence 344444455555777888999999999764
No 386
>KOG2961 consensus Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=28.88 E-value=1.2e+02 Score=24.26 Aligned_cols=35 Identities=11% Similarity=0.059 Sum_probs=29.3
Q ss_pred CcEEEEEecCCccccCcCCCCCCCCCHHHHHHHHHHhhc
Q 040896 20 KKIVVFLDYDGTLSPIVEDPDKAFMSDTMRMAVHEVAHF 58 (288)
Q Consensus 20 ~~~li~~DlDGTL~~~~~~~~~~~i~~~~~~aL~~L~~~ 58 (288)
..|.+++|=|.|++-+ .+..|-|..++-+++++..
T Consensus 42 ~ikavVlDKDNcit~P----~~~~Iwp~~l~~ie~~~~v 76 (190)
T KOG2961|consen 42 GIKAVVLDKDNCITAP----YSLAIWPPLLPSIERCKAV 76 (190)
T ss_pred CceEEEEcCCCeeeCC----cccccCchhHHHHHHHHHH
Confidence 6799999999999974 4567888888888888865
No 387
>PRK05429 gamma-glutamyl kinase; Provisional
Probab=28.78 E-value=2.1e+02 Score=26.28 Aligned_cols=30 Identities=10% Similarity=0.108 Sum_probs=22.4
Q ss_pred chhhHHHHHHhhcCCcEEEEEecCCccccC
Q 040896 6 ALDTFDRMVAAAKGKKIVVFLDYDGTLSPI 35 (288)
Q Consensus 6 ~~~~~~~~~~~~~~~~~li~~DlDGTL~~~ 35 (288)
+|..-..+..+.+....++++|+||-+...
T Consensus 153 ~D~~Aa~lA~~l~Ad~LiilTDVdGVy~~d 182 (372)
T PRK05429 153 NDTLSALVANLVEADLLILLTDVDGLYTAD 182 (372)
T ss_pred hHHHHHHHHHHcCCCEEEEecCCCeeEcCC
Confidence 445555566666778888999999999864
No 388
>TIGR01027 proB glutamate 5-kinase. Bacterial ProB proteins hit the full length of this model, but the ProB-like domain of delta 1-pyrroline-5-carboxylate synthetase does not hit the C-terminal 100 residues of this model. The noise cutoff is set low enough to hit delta 1-pyrroline-5-carboxylate synthetase and other partial matches to this family.
Probab=28.13 E-value=2.8e+02 Score=25.45 Aligned_cols=30 Identities=13% Similarity=0.069 Sum_probs=21.7
Q ss_pred chhhHHHHHHhhcCCcEEEEEecCCccccC
Q 040896 6 ALDTFDRMVAAAKGKKIVVFLDYDGTLSPI 35 (288)
Q Consensus 6 ~~~~~~~~~~~~~~~~~li~~DlDGTL~~~ 35 (288)
.|..-..+..+.+....++++|+||-+...
T Consensus 145 ~D~lAa~lA~~l~Ad~liilTDVdGVy~~d 174 (363)
T TIGR01027 145 NDTLSALVAILVGADLLVLLTDVDGLYDAD 174 (363)
T ss_pred hHHHHHHHHHHcCCCEEEEEeCCCcccCCC
Confidence 344445555566777888999999999864
No 389
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=27.97 E-value=2.1e+02 Score=24.43 Aligned_cols=75 Identities=15% Similarity=0.098 Sum_probs=41.5
Q ss_pred HHHHHHhhcCCcEEEEEecC-CccccCcCCCCCCCCCHHHHHHHHHHhhcC-CEEEEcCCChh---------hHhhhcCC
Q 040896 10 FDRMVAAAKGKKIVVFLDYD-GTLSPIVEDPDKAFMSDTMRMAVHEVAHFF-PTAIVSGRCLD---------KVSRFVQL 78 (288)
Q Consensus 10 ~~~~~~~~~~~~~li~~DlD-GTL~~~~~~~~~~~i~~~~~~aL~~L~~~~-~v~i~TGR~~~---------~l~~~~~~ 78 (288)
+.++.+.+. ++..+.+|+- |++.... ...-.....+.++++.+.+ .-+++|+|+.. .+.+....
T Consensus 114 ~~~i~~~~~-~~i~vsld~~~~~v~~~G----w~~~~~~~~~~~~~l~~~G~~~iiv~~~~~~g~~~G~d~~~i~~i~~~ 188 (241)
T PRK14024 114 CARVIAEHG-DRVAVGLDVRGHTLAARG----WTRDGGDLWEVLERLDSAGCSRYVVTDVTKDGTLTGPNLELLREVCAR 188 (241)
T ss_pred HHHHHHHhh-hhEEEEEEEeccEeccCC----eeecCccHHHHHHHHHhcCCCEEEEEeecCCCCccCCCHHHHHHHHhh
Confidence 444555443 2344566874 4554321 1112235678888888775 78888899864 22333222
Q ss_pred CCeEEEccCce
Q 040896 79 KNVVYAGSHGM 89 (288)
Q Consensus 79 ~~~~~i~~nGa 89 (288)
...|+|+++|.
T Consensus 189 ~~ipviasGGi 199 (241)
T PRK14024 189 TDAPVVASGGV 199 (241)
T ss_pred CCCCEEEeCCC
Confidence 34678886665
No 390
>PLN02512 acetylglutamate kinase
Probab=27.91 E-value=1.4e+02 Score=26.68 Aligned_cols=67 Identities=18% Similarity=0.188 Sum_probs=40.4
Q ss_pred cchhhHHHHHHhhcCCcEEEEEecCCccccCcCCCCCCCCCHHHHHHHHHHhhcCCEEEEcCCChhhHhhhc
Q 040896 5 SALDTFDRMVAAAKGKKIVVFLDYDGTLSPIVEDPDKAFMSDTMRMAVHEVAHFFPTAIVSGRCLDKVSRFV 76 (288)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~li~~DlDGTL~~~~~~~~~~~i~~~~~~aL~~L~~~~~v~i~TGR~~~~l~~~~ 76 (288)
++|.....+..+.+..+.++++|.||-+....+ ....++.-..+.+.++.+.+ .+||.+...++..+
T Consensus 206 ~~D~~A~~lA~~L~Ad~li~lTdV~GV~~~~~~--~~~lI~~i~~~e~~~l~~~~---~vtGGM~~Kl~aa~ 272 (309)
T PLN02512 206 NADTAAGEIAAALGAEKLILLTDVAGVLEDKDD--PGSLVKELDIKGVRKLIADG---KIAGGMIPKVECCV 272 (309)
T ss_pred CHHHHHHHHHHHcCCCEEEEEeCCcceeCCCCC--CcCCCcccCHHHHHHHHhCC---CCCCcHHHHHHHHH
Confidence 355556666666677888999999999976311 12223332234444444333 46788877777653
No 391
>KOG4779 consensus Predicted membrane protein [Function unknown]
Probab=27.72 E-value=41 Score=22.92 Aligned_cols=25 Identities=20% Similarity=0.406 Sum_probs=18.4
Q ss_pred HHHHHhcCCCCCCCceeEEEcCCcccHH
Q 040896 209 EYLLDTFGFNNASDFLPLYIGDDKTDED 236 (288)
Q Consensus 209 ~~l~~~~~~~~~~~~~vv~~GDs~ND~~ 236 (288)
++++.+.|.+.+ +.+.|||+++-+.
T Consensus 25 eRFL~riGws~d---~~~gFG~~q~tiK 49 (82)
T KOG4779|consen 25 ERFLKRIGWSTD---QGIGFGEDQPTIK 49 (82)
T ss_pred HHHHHHhCcCcc---cCcccCCCCccHH
Confidence 345566787766 8999999887653
No 392
>KOG2882 consensus p-Nitrophenyl phosphatase [Inorganic ion transport and metabolism]
Probab=27.68 E-value=58 Score=29.00 Aligned_cols=41 Identities=24% Similarity=0.442 Sum_probs=28.5
Q ss_pred HHHHHHHHhcCCCCCCCceeEEEcCCcccHHHHHHHHhcCCceE-EEEe
Q 040896 206 RALEYLLDTFGFNNASDFLPLYIGDDKTDEDAFKVIRHMGRGYP-IIVS 253 (288)
Q Consensus 206 ~al~~l~~~~~~~~~~~~~vv~~GDs~ND~~Ml~~~~~~~~g~~-v~v~ 253 (288)
...+.|++++++.++ +++.|||..|==-||... +|+. +.|-
T Consensus 228 ~m~~~l~~~~~i~ps---Rt~mvGDRL~TDIlFG~~----~G~~TLLvl 269 (306)
T KOG2882|consen 228 FMFEYLLEKFNIDPS---RTCMVGDRLDTDILFGKN----CGFKTLLVL 269 (306)
T ss_pred HHHHHHHHHcCCCcc---eEEEEcccchhhhhHhhc----cCcceEEEe
Confidence 567788899999988 999999996522335544 3653 4443
No 393
>cd04236 AAK_NAGS-Urea AAK_NAGS-Urea: N-acetylglutamate (NAG) kinase-like domain of the NAG Synthase (NAGS) of the urea cycle found in animals. Ureogenic NAGS is a mitochondrial enzyme catalyzing the formation of NAG from acetylcoenzyme A and L-glutamate; NAG is an essential allosteric activator of carbamylphosphate synthase I, the first and rate limiting enzyme of the urea cycle. Ureogenic NAGS activity is dependent on the concentration of glutamate (substrate) and arginine (activator). Domain architecture of ureogenic NAGS consists of an N-terminal NAG kinase-like (ArgB) domain (this CD) and a C-terminal DUF619 domain. Members of this CD belong to the protein superfamily, the Amino Acid Kinase Family (AAKF).
Probab=27.36 E-value=1.6e+02 Score=25.91 Aligned_cols=63 Identities=6% Similarity=0.107 Sum_probs=41.2
Q ss_pred chhhHHHHHHhhcCCcEEEEEecCCccccCcCCCCCCCCCHHH-HHHHHHHhhcCCEEEEcCCC---hhhHhhhc
Q 040896 6 ALDTFDRMVAAAKGKKIVVFLDYDGTLSPIVEDPDKAFMSDTM-RMAVHEVAHFFPTAIVSGRC---LDKVSRFV 76 (288)
Q Consensus 6 ~~~~~~~~~~~~~~~~~li~~DlDGTL~~~~~~~~~~~i~~~~-~~aL~~L~~~~~v~i~TGR~---~~~l~~~~ 76 (288)
|+..-..+..+.+..+.++++|.+|-+-+ ....++.-+ .+-+++|.+.+ ++||.+ ...+...+
T Consensus 174 aD~~A~~lA~aL~A~KLIfltd~~GV~~~-----~g~lI~~l~~~~e~~~li~~g---~i~gGm~~ki~ki~~~l 240 (271)
T cd04236 174 SSEVTTAIAKALQPIKVIFLNRSGGLRDQ-----KHKVLPQVHLPADLPSLSDAE---WLSETEQNRIQDIATLL 240 (271)
T ss_pred HHHHHHHHHHHcCCCEEEEEeCCcceECC-----CCCCccccCcHHHHHHHHhCC---EEcCCeeechHHHHHHH
Confidence 44444555555566778888999998853 233455544 37777777776 688888 56666655
No 394
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=27.16 E-value=2.6e+02 Score=23.94 Aligned_cols=79 Identities=13% Similarity=0.002 Sum_probs=41.9
Q ss_pred hhHHHHHHhhcCCcEEEEEecCC-------ccccCcCCCCCCCCCHHHHHHHHHHhhcC-CEEEEcCCCh---------h
Q 040896 8 DTFDRMVAAAKGKKIVVFLDYDG-------TLSPIVEDPDKAFMSDTMRMAVHEVAHFF-PTAIVSGRCL---------D 70 (288)
Q Consensus 8 ~~~~~~~~~~~~~~~li~~DlDG-------TL~~~~~~~~~~~i~~~~~~aL~~L~~~~-~v~i~TGR~~---------~ 70 (288)
..|+++...+.+.+.++.+|+-+ |.....- ...-.....+.++++.+.+ .-+++|+... .
T Consensus 111 ~~~~ei~~~~g~~~iv~slD~~~~~~~~~~~v~~~~~---~~~~~~~~~~~~~~~~~~g~~~ii~~~i~~~g~~~g~d~~ 187 (253)
T PRK02083 111 ELISEAADRFGSQCIVVAIDAKRDPEPGRWEVYTHGG---RKPTGLDAVEWAKEVEELGAGEILLTSMDRDGTKNGYDLE 187 (253)
T ss_pred HHHHHHHHHcCCCCEEEEEEeccCCCCCCEEEEEcCC---ceecCCCHHHHHHHHHHcCCCEEEEcCCcCCCCCCCcCHH
Confidence 35777777775566667788754 3332110 0011124566777777775 5666766332 2
Q ss_pred hHhhhcCCCCeEEEccCce
Q 040896 71 KVSRFVQLKNVVYAGSHGM 89 (288)
Q Consensus 71 ~l~~~~~~~~~~~i~~nGa 89 (288)
.+.+.....+.|+|+++|.
T Consensus 188 ~i~~~~~~~~ipvia~GGv 206 (253)
T PRK02083 188 LTRAVSDAVNVPVIASGGA 206 (253)
T ss_pred HHHHHHhhCCCCEEEECCC
Confidence 2233322234678887665
No 395
>TIGR01691 enolase-ppase 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. This enzyme is the enolase-phosphatase of methionine salvage, a pathway that regenerates methionine from methylthioadenosine (MTA). Adenosylmethionine (AdoMet) is a donor of different moieties for various processes, including methylation reactions. Use of AdoMet for spermidine biosynthesis, which leads to polyamine biosynthesis, leaves MTA as a by-product that must be cleared. In Bacillus subtilis and related species, this single protein is replaced by separate enzymes with enolase and phosphatase activities.
Probab=27.12 E-value=81 Score=26.68 Aligned_cols=35 Identities=9% Similarity=0.016 Sum_probs=28.4
Q ss_pred CCCCHHHHHHHHHHhhcC-CEEEEcCCChhhHhhhc
Q 040896 42 AFMSDTMRMAVHEVAHFF-PTAIVSGRCLDKVSRFV 76 (288)
Q Consensus 42 ~~i~~~~~~aL~~L~~~~-~v~i~TGR~~~~l~~~~ 76 (288)
..+-+.+.++|++|++++ +++|+|..+.......+
T Consensus 94 ~~lypgv~e~L~~Lk~~G~~l~I~Sn~s~~~~~~~~ 129 (220)
T TIGR01691 94 SHLYPDVPPALEAWLQLGLRLAVYSSGSVPAQKLLF 129 (220)
T ss_pred cCcCcCHHHHHHHHHHCCCEEEEEeCCCHHHHHHHH
Confidence 456788999999999886 89999999887665554
No 396
>PF06342 DUF1057: Alpha/beta hydrolase of unknown function (DUF1057); InterPro: IPR010463 This entry consists of proteins of unknown function which have an alpha/beta hydrolase fold.
Probab=27.10 E-value=1.3e+02 Score=26.67 Aligned_cols=66 Identities=17% Similarity=0.330 Sum_probs=50.1
Q ss_pred CCeEEeCCceEEEEeCCCCCCHHHHHHHHHHhcCCCCCCCceeEEEcCCcccHHHHHHHHhcCCceEEEEecCC
Q 040896 183 PNFRISGGKKVMEIRPCIDWDKGRALEYLLDTFGFNNASDFLPLYIGDDKTDEDAFKVIRHMGRGYPIIVSSVP 256 (288)
Q Consensus 183 ~~~~~~~~~~~ieI~~~~~~sKg~al~~l~~~~~~~~~~~~~vv~~GDs~ND~~Ml~~~~~~~~g~~v~v~na~ 256 (288)
||+..+.+ .-+.... +..+..=++.|++.+++.. .++++|=|..=+..|+.+.... ..|++|-|+.
T Consensus 71 PGf~~t~~--~~~~~~~-n~er~~~~~~ll~~l~i~~----~~i~~gHSrGcenal~la~~~~-~~g~~lin~~ 136 (297)
T PF06342_consen 71 PGFGFTPG--YPDQQYT-NEERQNFVNALLDELGIKG----KLIFLGHSRGCENALQLAVTHP-LHGLVLINPP 136 (297)
T ss_pred CCCCCCCC--CcccccC-hHHHHHHHHHHHHHcCCCC----ceEEEEeccchHHHHHHHhcCc-cceEEEecCC
Confidence 44443333 3444555 7799999999999999984 8999999999999999887664 5677777764
No 397
>TIGR00067 glut_race glutamate racemase. The most closely related proteins differing in function are aspartate racemases.
Probab=26.40 E-value=2.9e+02 Score=23.83 Aligned_cols=31 Identities=16% Similarity=0.140 Sum_probs=24.5
Q ss_pred eCCCCCCHHHHHHHHHHhcCCCCCCCceeEEEcCCcc
Q 040896 197 RPCIDWDKGRALEYLLDTFGFNNASDFLPLYIGDDKT 233 (288)
Q Consensus 197 ~~~~~~sKg~al~~l~~~~~~~~~~~~~vv~~GDs~N 233 (288)
... |+.=.+.++.+.+.++-. ++++|||+.|
T Consensus 4 fDS-GiGGltv~~~l~~~~p~~-----~~iy~~D~~~ 34 (251)
T TIGR00067 4 FDS-GVGGLSVLKEIRKQLPKE-----HYIYVGDTKR 34 (251)
T ss_pred EeC-CccHHHHHHHHHHHCCCC-----CEEEEecCCC
Confidence 344 777788899999987643 8999999976
No 398
>PRK13402 gamma-glutamyl kinase; Provisional
Probab=25.52 E-value=1.3e+02 Score=27.70 Aligned_cols=29 Identities=17% Similarity=0.225 Sum_probs=20.9
Q ss_pred hhhHHHHHHhhcCCcEEEEEecCCccccC
Q 040896 7 LDTFDRMVAAAKGKKIVVFLDYDGTLSPI 35 (288)
Q Consensus 7 ~~~~~~~~~~~~~~~~li~~DlDGTL~~~ 35 (288)
|..-..+..+.+....++++|+||-+...
T Consensus 150 D~lAa~vA~~l~Ad~LiilTDVdGvy~~d 178 (368)
T PRK13402 150 DNLSAMVAALADADTLIILSDIDGLYDQN 178 (368)
T ss_pred HHHHHHHHHHhCCCEEEEEecCCeEEeCC
Confidence 34444455556777888999999999864
No 399
>COG0101 TruA Pseudouridylate synthase [Translation, ribosomal structure and biogenesis]
Probab=25.32 E-value=1.2e+02 Score=26.49 Aligned_cols=54 Identities=20% Similarity=0.241 Sum_probs=38.6
Q ss_pred cEEEEEecCCcccc-CcCCCCCCCCCHHHHHHHHHHhhcCCEEEEcCCChhhHhh
Q 040896 21 KIVVFLDYDGTLSP-IVEDPDKAFMSDTMRMAVHEVAHFFPTAIVSGRCLDKVSR 74 (288)
Q Consensus 21 ~~li~~DlDGTL~~-~~~~~~~~~i~~~~~~aL~~L~~~~~v~i~TGR~~~~l~~ 74 (288)
+..+-+=+|||-.. .-.+|+...+..++.++|.++.....-+.++||.=..+-.
T Consensus 3 ri~l~iaYdGt~f~G~Q~Qp~~~TVQ~~le~aL~~i~~~~~~i~~AGRTD~GVHA 57 (266)
T COG0101 3 RIALKIAYDGTRFHGWQRQPNVRTVQGELEKALSKIGGESVRVIGAGRTDAGVHA 57 (266)
T ss_pred eEEEEEEEcCCceeeeccCCCCCCHHHHHHHHHHHhcCCcceeEEecCCCcCccc
Confidence 45677889999875 1233445677888888988888665568899998665443
No 400
>PRK10671 copA copper exporting ATPase; Provisional
Probab=25.27 E-value=1.7e+02 Score=30.09 Aligned_cols=57 Identities=11% Similarity=0.123 Sum_probs=42.0
Q ss_pred cCCcEEEEEecCCccccCcCCCCCCCCCHHHHHHHHHHhhcC-CEEEEcCCChhhHhhhc
Q 040896 18 KGKKIVVFLDYDGTLSPIVEDPDKAFMSDTMRMAVHEVAHFF-PTAIVSGRCLDKVSRFV 76 (288)
Q Consensus 18 ~~~~~li~~DlDGTL~~~~~~~~~~~i~~~~~~aL~~L~~~~-~v~i~TGR~~~~l~~~~ 76 (288)
+...+.+++-.||+++..-. -...+.+...++|++|++.+ .++++||.+......+.
T Consensus 627 ~~g~~~v~va~~~~~~g~~~--l~d~~r~~a~~~i~~L~~~gi~v~~~Tgd~~~~a~~ia 684 (834)
T PRK10671 627 SQGATPVLLAVDGKAAALLA--IRDPLRSDSVAALQRLHKAGYRLVMLTGDNPTTANAIA 684 (834)
T ss_pred hCCCeEEEEEECCEEEEEEE--ccCcchhhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHH
Confidence 44567777778998773211 12346788999999999885 89999999998776653
No 401
>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type. E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.
Probab=25.05 E-value=2.2e+02 Score=27.99 Aligned_cols=53 Identities=8% Similarity=-0.051 Sum_probs=35.5
Q ss_pred cCCcEEEEEecCCccccCcCCCCCCCCCHHHHHHHHHHhhcCCEEEEcCCChhhHhhhc
Q 040896 18 KGKKIVVFLDYDGTLSPIVEDPDKAFMSDTMRMAVHEVAHFFPTAIVSGRCLDKVSRFV 76 (288)
Q Consensus 18 ~~~~~li~~DlDGTL~~~~~~~~~~~i~~~~~~aL~~L~~~~~v~i~TGR~~~~l~~~~ 76 (288)
+.+.+.|++|+|+-=- ....-.++++++|+++++.++.+++-|..+..-.-++
T Consensus 91 D~~IkgIvL~i~~~~g------~~~~~~~ei~~ai~~fk~sgKpVvA~~~~~~s~~Yyl 143 (584)
T TIGR00705 91 DRRIEGLVFDLSNFSG------WDSPHLVEIGSALSEFKDSGKPVYAYGTNYSQGQYYL 143 (584)
T ss_pred CCCceEEEEEccCCCC------CCHHHHHHHHHHHHHHHhcCCeEEEEEccccchhhhh
Confidence 4577999999984200 0001235899999999988766677777776544444
No 402
>COG0548 ArgB Acetylglutamate kinase [Amino acid transport and metabolism]
Probab=24.96 E-value=1.3e+02 Score=26.34 Aligned_cols=62 Identities=23% Similarity=0.313 Sum_probs=35.5
Q ss_pred hhhHHHHHHhhcCCcEEEEEecCCccccCcCCCCCCCCCHHHHHHHHHHhhcCCEEEEcCCChhhHhh
Q 040896 7 LDTFDRMVAAAKGKKIVVFLDYDGTLSPIVEDPDKAFMSDTMRMAVHEVAHFFPTAIVSGRCLDKVSR 74 (288)
Q Consensus 7 ~~~~~~~~~~~~~~~~li~~DlDGTL~~~~~~~~~~~i~~~~~~aL~~L~~~~~v~i~TGR~~~~l~~ 74 (288)
++.=-.+..+....+.++++|.+|-|-+... + ..+++-..+.+++|.+.. +++|++...+..
T Consensus 165 D~~A~~iA~aLkAekLi~ltdv~Gvl~~~~~-~--s~i~~~~~~~~~~li~~~---~i~~GMi~Kv~~ 226 (265)
T COG0548 165 DTAAGALAAALKAEKLILLTDVPGVLDDKGD-P--SLISELDAEEAEELIEQG---IITGGMIPKVEA 226 (265)
T ss_pred HHHHHHHHHHcCCCeEEEEeCCcccccCCCC-c--eeeccCCHHHHHHHHhcC---CccCccHHHHHH
Confidence 3333445555677889999999999987431 0 244444445555554444 444554444444
No 403
>PLN02811 hydrolase
Probab=24.84 E-value=1e+02 Score=25.64 Aligned_cols=31 Identities=16% Similarity=0.076 Sum_probs=25.4
Q ss_pred CCCHHHHHHHHHHhhcC-CEEEEcCCChhhHh
Q 040896 43 FMSDTMRMAVHEVAHFF-PTAIVSGRCLDKVS 73 (288)
Q Consensus 43 ~i~~~~~~aL~~L~~~~-~v~i~TGR~~~~l~ 73 (288)
.+-+.+.++|+.|++.+ +++|+||.+...+.
T Consensus 78 ~l~~gv~e~l~~L~~~g~~~~i~S~~~~~~~~ 109 (220)
T PLN02811 78 DLMPGAERLVRHLHAKGIPIAIATGSHKRHFD 109 (220)
T ss_pred CCCccHHHHHHHHHHCCCcEEEEeCCchhhHH
Confidence 45678999999999885 99999998876544
No 404
>PRK04017 hypothetical protein; Provisional
Probab=24.76 E-value=2e+02 Score=22.33 Aligned_cols=44 Identities=14% Similarity=0.120 Sum_probs=29.5
Q ss_pred HHHHHHHHHhhc---CCEEEEcCCChhhHhhhcCCCCeEEEccCceeE
Q 040896 47 TMRMAVHEVAHF---FPTAIVSGRCLDKVSRFVQLKNVVYAGSHGMDI 91 (288)
Q Consensus 47 ~~~~aL~~L~~~---~~v~i~TGR~~~~l~~~~~~~~~~~i~~nGa~i 91 (288)
...+.|.+|.+. +.++++-||.=.....-+|+... +|..+|.-+
T Consensus 8 ~~~e~i~~L~e~s~~g~vIVVEGk~D~~~L~~lGv~~~-iI~t~g~~~ 54 (132)
T PRK04017 8 RFEEIIEELKEFSEAGAPIIVEGKRDVESLRKLGVEGE-IIKVSRTPL 54 (132)
T ss_pred HHHHHHHHHHHhcCCCCEEEEeCccHHHHHHHcCCCcc-EEEECCeec
Confidence 456667777655 47899999997666666776544 455556543
No 405
>PRK01178 rps24e 30S ribosomal protein S24e; Reviewed
Probab=24.11 E-value=2.1e+02 Score=20.96 Aligned_cols=35 Identities=9% Similarity=-0.071 Sum_probs=28.0
Q ss_pred eEEEEeCCC--CCCHHHHHHHHHHhcCCCCCCCceeEEEc
Q 040896 192 KVMEIRPCI--DWDKGRALEYLLDTFGFNNASDFLPLYIG 229 (288)
Q Consensus 192 ~~ieI~~~~--~~sKg~al~~l~~~~~~~~~~~~~vv~~G 229 (288)
-.++|.+++ ..||..--.+|+++++.+.+ .|+++|
T Consensus 19 ~~~~v~h~g~~tpsr~eirekLa~~~~~~~~---~vvv~~ 55 (99)
T PRK01178 19 IKFEVYHEGSATPSRKDVRKKLAAMLNADKE---LVVVRK 55 (99)
T ss_pred EEEEEEeCCCCCCCHHHHHHHHHHHHCcCCC---EEEEEc
Confidence 456666552 47999999999999997776 888888
No 406
>PF02590 SPOUT_MTase: Predicted SPOUT methyltransferase; InterPro: IPR003742 This family of proteins are predicted to be SPOUT methyltransferases []. ; GO: 0008168 methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1VH0_E 4FAK_A 1TO0_G 1O6D_A 1NS5_B.
Probab=24.00 E-value=1.3e+02 Score=24.01 Aligned_cols=51 Identities=14% Similarity=0.135 Sum_probs=31.9
Q ss_pred HHHHhhcCCcEEEEEecCCccccCcCCCCCCCCCHHHHHHHHHHhhcC--CEEEEcCCChhhH
Q 040896 12 RMVAAAKGKKIVVFLDYDGTLSPIVEDPDKAFMSDTMRMAVHEVAHFF--PTAIVSGRCLDKV 72 (288)
Q Consensus 12 ~~~~~~~~~~~li~~DlDGTL~~~~~~~~~~~i~~~~~~aL~~L~~~~--~v~i~TGR~~~~l 72 (288)
++....+.+..+|++|..|-.++ |++.-+.|.+....+ .++++-|-+...-
T Consensus 59 ~il~~i~~~~~~i~Ld~~Gk~~s----------S~~fA~~l~~~~~~g~~~i~F~IGG~~G~~ 111 (155)
T PF02590_consen 59 RILKKIPPNDYVILLDERGKQLS----------SEEFAKKLERWMNQGKSDIVFIIGGADGLS 111 (155)
T ss_dssp HHHCTSHTTSEEEEE-TTSEE------------HHHHHHHHHHHHHTTS-EEEEEE-BTTB--
T ss_pred HHHhhccCCCEEEEEcCCCccCC----------hHHHHHHHHHHHhcCCceEEEEEecCCCCC
Confidence 34444456778899999998887 467778888877664 5777777666433
No 407
>TIGR01533 lipo_e_P4 5'-nucleotidase, lipoprotein e(P4) family. which in turn belongs to the haloacid dehalogenase (HAD) superfamily of aspartate-dependent hydrolases. Members are found on the outer membrane of Gram-negative bacteria and the cytoplasmic membrane of Gram-positive bacteria. Most members have classic lipoprotein signal sequences. A critical role of this 5'-nucleotidase in Haemophilus influenzae is the degradation of external riboside in order to allow transport into the cell. An earlier suggested role in hemin transport is no longer current. This enzyme may also have other physiologically significant roles.
Probab=23.59 E-value=1.1e+02 Score=26.91 Aligned_cols=37 Identities=16% Similarity=0.206 Sum_probs=26.2
Q ss_pred EEEEeCCCCCCHHHHHHHHHHhcCCCCCCCceeEEEcCCcccHHH
Q 040896 193 VMEIRPCIDWDKGRALEYLLDTFGFNNASDFLPLYIGDDKTDEDA 237 (288)
Q Consensus 193 ~ieI~~~~~~sKg~al~~l~~~~~~~~~~~~~vv~~GDs~ND~~M 237 (288)
.+-..+. +-+|....+.+.+.++ -++.|||..+|+.-
T Consensus 167 ~lllr~~-~~~K~~rr~~I~~~y~-------Ivl~vGD~~~Df~~ 203 (266)
T TIGR01533 167 HLLLKKD-KSSKESRRQKVQKDYE-------IVLLFGDNLLDFDD 203 (266)
T ss_pred eEEeCCC-CCCcHHHHHHHHhcCC-------EEEEECCCHHHhhh
Confidence 3334444 5678888887776543 47999999999854
No 408
>TIGR01672 AphA HAD superfamily (subfamily IIIB) phosphatase, TIGR01672. Supporting evidence for the inclusion in the HAD superfamily, whose phosphatase members are magnesium dependent, is the inhibition by EDTA and calcium ions, and stimulation by magnesium ion.
Probab=23.42 E-value=52 Score=28.24 Aligned_cols=17 Identities=29% Similarity=0.284 Sum_probs=14.3
Q ss_pred eEEEcCCcccHHHHHHH
Q 040896 225 PLYIGDDKTDEDAFKVI 241 (288)
Q Consensus 225 vv~~GDs~ND~~Ml~~~ 241 (288)
++++||+.||+..-+.+
T Consensus 187 ~i~vGDs~~DI~aAk~A 203 (237)
T TIGR01672 187 RIHYGDSDNDITAAKEA 203 (237)
T ss_pred eEEEeCCHHHHHHHHHC
Confidence 58999999999766666
No 409
>cd01455 vWA_F11C1-5a_type Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A
Probab=23.35 E-value=4.3e+02 Score=21.88 Aligned_cols=56 Identities=16% Similarity=0.277 Sum_probs=37.4
Q ss_pred HHHHHHHHhcCCCCCCCceeEEEcCCcccHHHHHHHHhcCCceEEEEecCCCCccceEEeCChhHHHHHHHHHHH
Q 040896 206 RALEYLLDTFGFNNASDFLPLYIGDDKTDEDAFKVIRHMGRGYPIIVSSVPRETKALYSLRDPDEVMSFLRRLAR 280 (288)
Q Consensus 206 ~al~~l~~~~~~~~~~~~~vv~~GDs~ND~~Ml~~~~~~~~g~~v~v~na~~~~~A~~~~~~~~~v~~~l~~~~~ 280 (288)
.+...+++..|+.. .++++|+. |.+.++.+-...+|-.+ ...+.+++.+.++.|+-
T Consensus 132 ~aAa~lA~~~gV~i----ytIgiG~~--d~~~l~~iA~~tgG~~F-------------~A~d~~~L~~iy~~I~~ 187 (191)
T cd01455 132 KLADALAREPNVNA----FVIFIGSL--SDEADQLQRELPAGKAF-------------VCMDTSELPHIMQQIFT 187 (191)
T ss_pred HHHHHHHHhCCCEE----EEEEecCC--CHHHHHHHHhCCCCcEE-------------EeCCHHHHHHHHHHHHH
Confidence 44567778889875 88888874 77888876544334333 34566777777777764
No 410
>PRK11009 aphA acid phosphatase/phosphotransferase; Provisional
Probab=23.19 E-value=48 Score=28.50 Aligned_cols=18 Identities=22% Similarity=0.445 Sum_probs=15.1
Q ss_pred eeEEEcCCcccHHHHHHH
Q 040896 224 LPLYIGDDKTDEDAFKVI 241 (288)
Q Consensus 224 ~vv~~GDs~ND~~Ml~~~ 241 (288)
.++++||+.+|+.+-+.+
T Consensus 186 i~I~IGDs~~Di~aA~~A 203 (237)
T PRK11009 186 IRIFYGDSDNDITAAREA 203 (237)
T ss_pred CeEEEcCCHHHHHHHHHc
Confidence 358899999999877776
No 411
>PRK01122 potassium-transporting ATPase subunit B; Provisional
Probab=22.77 E-value=1.9e+02 Score=29.14 Aligned_cols=57 Identities=11% Similarity=0.114 Sum_probs=41.6
Q ss_pred hcCCcEEEEEecCCccccCcCCCCCCCCCHHHHHHHHHHhhcC-CEEEEcCCChhhHhhh
Q 040896 17 AKGKKIVVFLDYDGTLSPIVEDPDKAFMSDTMRMAVHEVAHFF-PTAIVSGRCLDKVSRF 75 (288)
Q Consensus 17 ~~~~~~li~~DlDGTL~~~~~~~~~~~i~~~~~~aL~~L~~~~-~v~i~TGR~~~~l~~~ 75 (288)
+....+.+++-.|++++..-. =...+.++..+++++|++.+ +++++||=.......+
T Consensus 421 a~~G~~~l~va~~~~~lG~i~--l~D~~R~~~~eai~~Lr~~GI~vvMiTGDn~~TA~aI 478 (679)
T PRK01122 421 ARKGGTPLVVAEDNRVLGVIY--LKDIVKPGIKERFAELRKMGIKTVMITGDNPLTAAAI 478 (679)
T ss_pred HhCCCcEEEEEECCeEEEEEE--EeccCchhHHHHHHHHHHCCCeEEEECCCCHHHHHHH
Confidence 444556666667888774210 12247789999999999985 9999999999877765
No 412
>KOG0257 consensus Kynurenine aminotransferase, glutamine transaminase K [Amino acid transport and metabolism]
Probab=22.75 E-value=2.6e+02 Score=26.16 Aligned_cols=60 Identities=10% Similarity=0.107 Sum_probs=47.2
Q ss_pred hhhHHHHHHhhcCCcEEEEEecCCccccCcCCCCCCCCCHHHHHHHHHHhhcCCEEEEcCCChhhHh
Q 040896 7 LDTFDRMVAAAKGKKIVVFLDYDGTLSPIVEDPDKAFMSDTMRMAVHEVAHFFPTAIVSGRCLDKVS 73 (288)
Q Consensus 7 ~~~~~~~~~~~~~~~~li~~DlDGTL~~~~~~~~~~~i~~~~~~aL~~L~~~~~v~i~TGR~~~~l~ 73 (288)
..||+.+-.+...+.|+|++- ...||.....+.+-++.|.+|++++.++++|---++.+.
T Consensus 159 ~~D~~~le~~~t~kTk~Ii~n-------tPhNPtGkvfsReeLe~ia~l~~k~~~lvisDevYe~~v 218 (420)
T KOG0257|consen 159 TLDPEELESKITEKTKAIILN-------TPHNPTGKVFSREELERIAELCKKHGLLVISDEVYEWLV 218 (420)
T ss_pred cCChHHHHhhccCCccEEEEe-------CCCCCcCcccCHHHHHHHHHHHHHCCEEEEEhhHhHHHh
Confidence 468888888888888888753 456778888899999999999999878888866665543
No 413
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=22.70 E-value=1.1e+02 Score=27.96 Aligned_cols=48 Identities=23% Similarity=0.201 Sum_probs=37.9
Q ss_pred eEEeCCceEEEEeCCCCCCHHHHHHHHHHhcCCCCCCCceeEEEcCCcccHH
Q 040896 185 FRISGGKKVMEIRPCIDWDKGRALEYLLDTFGFNNASDFLPLYIGDDKTDED 236 (288)
Q Consensus 185 ~~~~~~~~~ieI~~~~~~sKg~al~~l~~~~~~~~~~~~~vv~~GDs~ND~~ 236 (288)
+.+..|..++=+-|. |+.|.+-|+.++-...++.- ++..-|...||++
T Consensus 24 l~i~~Gef~vllGPS-GcGKSTlLr~IAGLe~~~~G---~I~i~g~~vt~l~ 71 (338)
T COG3839 24 LDIEDGEFVVLLGPS-GCGKSTLLRMIAGLEEPTSG---EILIDGRDVTDLP 71 (338)
T ss_pred EEEcCCCEEEEECCC-CCCHHHHHHHHhCCCCCCCc---eEEECCEECCCCC
Confidence 555667667777787 99999999999988777655 8888888888854
No 414
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=22.65 E-value=1.4e+02 Score=22.11 Aligned_cols=34 Identities=9% Similarity=-0.112 Sum_probs=27.5
Q ss_pred CCCHHHHHHHHHHhhcC-CEEEEcCCChhhHhhhc
Q 040896 43 FMSDTMRMAVHEVAHFF-PTAIVSGRCLDKVSRFV 76 (288)
Q Consensus 43 ~i~~~~~~aL~~L~~~~-~v~i~TGR~~~~l~~~~ 76 (288)
.-++++.++++.+++++ +++.+|+.+...+.+.-
T Consensus 57 G~t~e~~~~~~~a~~~g~~vi~iT~~~~s~la~~a 91 (126)
T cd05008 57 GETADTLAALRLAKEKGAKTVAITNVVGSTLAREA 91 (126)
T ss_pred cCCHHHHHHHHHHHHcCCeEEEEECCCCChHHHhC
Confidence 34678999999999995 89999999877776653
No 415
>KOG3109 consensus Haloacid dehalogenase-like hydrolase [General function prediction only]
Probab=22.62 E-value=1.2e+02 Score=25.94 Aligned_cols=32 Identities=28% Similarity=0.323 Sum_probs=23.9
Q ss_pred CCcEEEEEecCCccccCcCCCCCCCCCHHHHHHHHHH
Q 040896 19 GKKIVVFLDYDGTLSPIVEDPDKAFMSDTMRMAVHEV 55 (288)
Q Consensus 19 ~~~~li~~DlDGTL~~~~~~~~~~~i~~~~~~aL~~L 55 (288)
...++++||+|.||.+ .+..+....++-|.+.
T Consensus 13 ~~~~~l~FDiDdtLYp-----~St~i~~~~~~nI~~f 44 (244)
T KOG3109|consen 13 PNYKCLFFDIDDTLYP-----LSTGIQLMMRNNIQEF 44 (244)
T ss_pred ccceEEEEeccccccc-----CchhHHHHHHHHHHHH
Confidence 3679999999999998 4556666666555544
No 416
>COG1433 Uncharacterized conserved protein [Function unknown]
Probab=22.04 E-value=3.3e+02 Score=20.74 Aligned_cols=43 Identities=19% Similarity=0.189 Sum_probs=35.3
Q ss_pred CCHHHHHHHHHHhcCCCCCCCceeEEEcCCcccHHHHHHHHhcCCceEEEEec
Q 040896 202 WDKGRALEYLLDTFGFNNASDFLPLYIGDDKTDEDAFKVIRHMGRGYPIIVSS 254 (288)
Q Consensus 202 ~sKg~al~~l~~~~~~~~~~~~~vv~~GDs~ND~~Ml~~~~~~~~g~~v~v~n 254 (288)
.-||..+..++...|++ -+++=+.+.|=..+|+.+ |.-|.++.
T Consensus 51 ~g~G~~~a~~l~~~gvd-----vvi~~~iG~~a~~~l~~~-----GIkv~~~~ 93 (121)
T COG1433 51 KGAGIRIAELLVDEGVD-----VVIASNIGPNAYNALKAA-----GIKVYVAP 93 (121)
T ss_pred CcchHHHHHHHHHcCCC-----EEEECccCHHHHHHHHHc-----CcEEEecC
Confidence 45677788899999987 889999999888888887 77776653
No 417
>cd04261 AAK_AKii-LysC-BS AAK_AKii-LysC-BS: Amino Acid Kinase Superfamily (AAK), AKii; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine, and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase isoenzyme type, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In this organism and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regulated by the concerted action of lysine and
Probab=21.97 E-value=1.7e+02 Score=24.82 Aligned_cols=54 Identities=15% Similarity=0.149 Sum_probs=33.4
Q ss_pred cchhhHHHHHHhhcCCcEEEEEecCCccccCc-CCCCCCCCCHHHHHHHHHHhhc
Q 040896 5 SALDTFDRMVAAAKGKKIVVFLDYDGTLSPIV-EDPDKAFMSDTMRMAVHEVAHF 58 (288)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~li~~DlDGTL~~~~-~~~~~~~i~~~~~~aL~~L~~~ 58 (288)
++|.....+..+.+.+..++.+|+||-+..++ ..++...++.-..+.+.+|...
T Consensus 150 ~sD~~A~~lA~~l~A~~lii~tdV~GVy~~dP~~~~~a~~i~~i~~~ea~~l~~~ 204 (239)
T cd04261 150 GSDTSAVALAAALGADRCEIYTDVDGVYTADPRIVPKARKLDEISYDEMLEMASL 204 (239)
T ss_pred ChHHHHHHHHHHcCCCEEEEEeCCCCCCCCCCCCCCCceEccccCHHHHHHHHhc
Confidence 45666666666667778889999999997543 2223333444344555555543
No 418
>TIGR00090 iojap_ybeB iojap-like ribosome-associated protein. This model describes a widely distributed family of bacterial proteins related to iojap from plants. It includes YbeB from E. coli. The gene iojap is a pattern-striping gene in maize, reflecting a chloroplast development defect in some cells. More recent work in bacteria suggests that the bacterial iojap-related protein physically associates with ribosomes. The function remains unknown.
Probab=21.88 E-value=72 Score=23.27 Aligned_cols=17 Identities=24% Similarity=0.194 Sum_probs=14.4
Q ss_pred CEEEEcCCChhhHhhhc
Q 040896 60 PTAIVSGRCLDKVSRFV 76 (288)
Q Consensus 60 ~v~i~TGR~~~~l~~~~ 76 (288)
.++||||++...+..+.
T Consensus 31 y~VI~Tg~S~rh~~aia 47 (99)
T TIGR00090 31 YFVIASGTSSRHVKAIA 47 (99)
T ss_pred EEEEEEeCCHHHHHHHH
Confidence 68999999999887753
No 419
>COG0436 Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]
Probab=21.76 E-value=2.6e+02 Score=25.83 Aligned_cols=59 Identities=20% Similarity=0.222 Sum_probs=46.0
Q ss_pred hhhHHHHHHhhcCCcEEEEEecCCccccCcCCCCCCCCCHHHHHHHHHHhhcCCEEEEcCCChhhH
Q 040896 7 LDTFDRMVAAAKGKKIVVFLDYDGTLSPIVEDPDKAFMSDTMRMAVHEVAHFFPTAIVSGRCLDKV 72 (288)
Q Consensus 7 ~~~~~~~~~~~~~~~~li~~DlDGTL~~~~~~~~~~~i~~~~~~aL~~L~~~~~v~i~TGR~~~~l 72 (288)
..++|.+-.+...+.|+|++ +...||.....+++.+++|-++.+.+.++|++==.+..+
T Consensus 150 ~~d~~~l~~~i~~ktk~i~l-------n~P~NPTGav~~~~~l~~i~~~a~~~~i~ii~DEiY~~l 208 (393)
T COG0436 150 KPDLEDLEAAITPKTKAIIL-------NSPNNPTGAVYSKEELKAIVELAREHDIIIISDEIYEEL 208 (393)
T ss_pred cCCHHHHHhhcCccceEEEE-------eCCCCCcCcCCCHHHHHHHHHHHHHcCeEEEEehhhhhc
Confidence 45788888887667787765 356788888999999999999999988888876555443
No 420
>cd00006 PTS_IIA_man PTS_IIA, PTS system, mannose/sorbose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation. IIA subunits receive phosphoryl groups from HPr and transfer them to IIB subunits, which in turn phosphorylate the substrate.
Probab=21.75 E-value=3.3e+02 Score=20.26 Aligned_cols=18 Identities=17% Similarity=0.255 Sum_probs=11.4
Q ss_pred CCEEEEcCCChhhHhhhc
Q 040896 59 FPTAIVSGRCLDKVSRFV 76 (288)
Q Consensus 59 ~~v~i~TGR~~~~l~~~~ 76 (288)
..+.++||=+...+.+.+
T Consensus 83 ~~~~visG~nlpmlle~~ 100 (122)
T cd00006 83 PPVEVIAGVNLPMLLEAA 100 (122)
T ss_pred CCEEEEEccCHHHHHHHH
Confidence 456677777776666543
No 421
>PRK00269 zipA cell division protein ZipA; Reviewed
Probab=21.61 E-value=49 Score=29.27 Aligned_cols=41 Identities=22% Similarity=0.296 Sum_probs=30.9
Q ss_pred cchhhHHHHHHhhcCCcEEEEEecCCccccCcCCCCCCCCCHHHHHHHH
Q 040896 5 SALDTFDRMVAAAKGKKIVVFLDYDGTLSPIVEDPDKAFMSDTMRMAVH 53 (288)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~li~~DlDGTL~~~~~~~~~~~i~~~~~~aL~ 53 (288)
.+...|+.|+.++. .++-+|+|.|++. ....+++..++.++
T Consensus 238 d~~~aFd~Ml~~A~----~LA~eLgG~VlDD----~R~~LT~q~ie~yR 278 (293)
T PRK00269 238 HPKQAFDVMVAAAR----KLAHELNGELKDD----QRSVLTAQTIEHYR 278 (293)
T ss_pred cHHHHHHHHHHHHH----HHHHHcCCEEECC----CCCcCCHHHHHHHH
Confidence 57889999999885 3677999999995 34567776665554
No 422
>PRK02553 psbK photosystem II reaction center protein K; Provisional
Probab=21.58 E-value=27 Score=21.33 Aligned_cols=17 Identities=41% Similarity=0.608 Sum_probs=13.3
Q ss_pred CCCccchhhHHHHHHhh
Q 040896 1 AKHPSALDTFDRMVAAA 17 (288)
Q Consensus 1 ~~~~~~~~~~~~~~~~~ 17 (288)
+|+|||-..|+-+++..
T Consensus 8 akLpEaya~f~PiVDvm 24 (45)
T PRK02553 8 AKLPEAYQAFDPLVDVL 24 (45)
T ss_pred HHCHHHHhhhccHHHHh
Confidence 57888888888877654
No 423
>PRK02228 V-type ATP synthase subunit F; Provisional
Probab=21.11 E-value=1.7e+02 Score=21.37 Aligned_cols=17 Identities=18% Similarity=0.184 Sum_probs=11.8
Q ss_pred eeEEEcCCcccHHHHHHH
Q 040896 224 LPLYIGDDKTDEDAFKVI 241 (288)
Q Consensus 224 ~vv~~GDs~ND~~Ml~~~ 241 (288)
.+.++|| ..-.-.|+.+
T Consensus 2 kIaVIGD-~dtv~GFrLa 18 (100)
T PRK02228 2 EIAVIGS-PEFTTGFRLA 18 (100)
T ss_pred EEEEEeC-HHHHHHHHHc
Confidence 5778888 4555567777
No 424
>PRK04296 thymidine kinase; Provisional
Probab=21.09 E-value=3e+02 Score=22.36 Aligned_cols=28 Identities=11% Similarity=0.059 Sum_probs=20.0
Q ss_pred CCCCHH-HHHHHHHHhhcCCEEEEcCCCh
Q 040896 42 AFMSDT-MRMAVHEVAHFFPTAIVSGRCL 69 (288)
Q Consensus 42 ~~i~~~-~~~aL~~L~~~~~v~i~TGR~~ 69 (288)
..++.+ ..+.++.|...+.-+++||+..
T Consensus 88 q~l~~~~v~~l~~~l~~~g~~vi~tgl~~ 116 (190)
T PRK04296 88 QFLDKEQVVQLAEVLDDLGIPVICYGLDT 116 (190)
T ss_pred ccCCHHHHHHHHHHHHHcCCeEEEEecCc
Confidence 345554 6667777777788889999983
No 425
>PF09047 MEF2_binding: MEF2 binding; InterPro: IPR015134 The myocyte enhancer factor-2 (MEF2) binding domain, predominantly found in the calcineurin-binding protein CABIN 1, adopts an amphipathic alpha-helical structure, which allows it to bind a hydrophobic groove on the MEF2S domain, forming a triple-helical interaction. Interaction of this domain with MEF2 causes repression of transcription []. ; PDB: 1N6J_G.
Probab=21.05 E-value=1e+02 Score=17.34 Aligned_cols=20 Identities=20% Similarity=0.263 Sum_probs=9.8
Q ss_pred ccccCcCCCCCCCCCHHHHHHHHHH
Q 040896 31 TLSPIVEDPDKAFMSDTMRMAVHEV 55 (288)
Q Consensus 31 TL~~~~~~~~~~~i~~~~~~aL~~L 55 (288)
||+. ..+.|++++.+-|+..
T Consensus 1 tlls-----pkgsiseetkqklk~~ 20 (35)
T PF09047_consen 1 TLLS-----PKGSISEETKQKLKSA 20 (35)
T ss_dssp ----------SS---HHHHHHHHHH
T ss_pred CccC-----CCCcccHHHHHHHHHH
Confidence 5666 4678999999988865
No 426
>PRK13938 phosphoheptose isomerase; Provisional
Probab=21.04 E-value=3.7e+02 Score=22.23 Aligned_cols=30 Identities=10% Similarity=0.093 Sum_probs=19.6
Q ss_pred CHHHHHHHHHHhhcC-CEEEEcCCChhhHhh
Q 040896 45 SDTMRMAVHEVAHFF-PTAIVSGRCLDKVSR 74 (288)
Q Consensus 45 ~~~~~~aL~~L~~~~-~v~i~TGR~~~~l~~ 74 (288)
++++.++++.+++++ +++..||.+-..+.+
T Consensus 126 t~~vi~a~~~Ak~~G~~vI~iT~~~~s~La~ 156 (196)
T PRK13938 126 SMSVLRAAKTARELGVTVVAMTGESGGQLAE 156 (196)
T ss_pred CHHHHHHHHHHHHCCCEEEEEeCCCCChhhh
Confidence 456777777777774 677777766554444
No 427
>TIGR02244 HAD-IG-Ncltidse HAD superfamily (subfamily IG) hydrolase, 5'-nucleotidase. A TIGRFAMs model (TIGR01993) represents a (putative) family of _pyrimidine_ 5'-nucleotidases which are also subfamily I HAD's, which should not be confused with the current model.
Probab=21.03 E-value=1.4e+02 Score=27.33 Aligned_cols=34 Identities=3% Similarity=0.027 Sum_probs=29.3
Q ss_pred CCHHHHHHHHHHhhcC-CEEEEcCCChhhHhhhcC
Q 040896 44 MSDTMRMAVHEVAHFF-PTAIVSGRCLDKVSRFVQ 77 (288)
Q Consensus 44 i~~~~~~aL~~L~~~~-~v~i~TGR~~~~l~~~~~ 77 (288)
..|.+.++|++|++.+ +++|+|+.+...+...+.
T Consensus 185 ~~pgl~elL~~Lr~~G~klfLvTNS~~~yt~~im~ 219 (343)
T TIGR02244 185 RDPKLPLFLSKLKEHGKKLFLLTNSDYDYTDKGMK 219 (343)
T ss_pred cchhHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHH
Confidence 3678999999999986 899999999988877664
No 428
>TIGR01522 ATPase-IIA2_Ca golgi membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1 the former of which is modelled by TIGR01116.
Probab=20.81 E-value=2.1e+02 Score=29.67 Aligned_cols=57 Identities=12% Similarity=0.031 Sum_probs=40.5
Q ss_pred hcCCcEEEEEecCC-----ccccCcCCCCCCCCCHHHHHHHHHHhhcC-CEEEEcCCChhhHhhh
Q 040896 17 AKGKKIVVFLDYDG-----TLSPIVEDPDKAFMSDTMRMAVHEVAHFF-PTAIVSGRCLDKVSRF 75 (288)
Q Consensus 17 ~~~~~~li~~DlDG-----TL~~~~~~~~~~~i~~~~~~aL~~L~~~~-~v~i~TGR~~~~l~~~ 75 (288)
+....+.+++=+++ |++..-. =...+.+++.++|++|++.+ +++++||........+
T Consensus 499 a~~G~rvl~~A~~~~~~~l~~lGli~--l~Dp~r~~~~~~i~~l~~~Gi~v~miTGD~~~tA~~i 561 (884)
T TIGR01522 499 ASAGLRVIAFASGPEKGQLTFLGLVG--INDPPRPGVKEAVTTLITGGVRIIMITGDSQETAVSI 561 (884)
T ss_pred HhcCCEEEEEEEEcCCCCeEEEEEEe--ccCcchhHHHHHHHHHHHCCCeEEEECCCCHHHHHHH
Confidence 44556776665554 4443110 12357789999999999985 9999999999887776
No 429
>PRK00103 rRNA large subunit methyltransferase; Provisional
Probab=20.69 E-value=3.3e+02 Score=21.73 Aligned_cols=40 Identities=20% Similarity=0.091 Sum_probs=23.0
Q ss_pred CcEEEEEecCCccccCcCCCCCCCCCHHHHHHHHHHhhcC--CEEEEcCCCh
Q 040896 20 KKIVVFLDYDGTLSPIVEDPDKAFMSDTMRMAVHEVAHFF--PTAIVSGRCL 69 (288)
Q Consensus 20 ~~~li~~DlDGTL~~~~~~~~~~~i~~~~~~aL~~L~~~~--~v~i~TGR~~ 69 (288)
...+|++|-.|..++ |++.-+.|.+....+ .++++-|-+.
T Consensus 67 ~~~~i~LDe~Gk~~s----------S~~fA~~l~~~~~~g~~~i~F~IGGa~ 108 (157)
T PRK00103 67 GARVIALDERGKQLS----------SEEFAQELERWRDDGRSDVAFVIGGAD 108 (157)
T ss_pred CCEEEEEcCCCCcCC----------HHHHHHHHHHHHhcCCccEEEEEcCcc
Confidence 445677777777665 345566666555442 4555555543
No 430
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=20.26 E-value=1.2e+02 Score=22.22 Aligned_cols=28 Identities=21% Similarity=0.277 Sum_probs=22.3
Q ss_pred EeCCCCCCHHHHHHHHHHhcCCCCCCCceeEEEcC
Q 040896 196 IRPCIDWDKGRALEYLLDTFGFNNASDFLPLYIGD 230 (288)
Q Consensus 196 I~~~~~~sKg~al~~l~~~~~~~~~~~~~vv~~GD 230 (288)
.-++ |+.|.+-.+.|++.+|+ .++.++|
T Consensus 5 ~G~~-gsGKST~a~~La~~~~~------~~i~~d~ 32 (121)
T PF13207_consen 5 SGPP-GSGKSTLAKELAERLGF------PVISMDD 32 (121)
T ss_dssp EEST-TSSHHHHHHHHHHHHTC------EEEEEHH
T ss_pred ECCC-CCCHHHHHHHHHHHHCC------eEEEecc
Confidence 3467 99999999999999987 4455555
No 431
>COG1001 AdeC Adenine deaminase [Nucleotide transport and metabolism]
Probab=20.25 E-value=2.9e+02 Score=27.12 Aligned_cols=60 Identities=22% Similarity=0.220 Sum_probs=41.5
Q ss_pred eeEEEcCCcccHHHHHHHHhcC---CceEEEEecCCC-----CccceEEe-CChhHHHHHHHHHHHHhhhCC
Q 040896 224 LPLYIGDDKTDEDAFKVIRHMG---RGYPIIVSSVPR-----ETKALYSL-RDPDEVMSFLRRLARWKKSLG 286 (288)
Q Consensus 224 ~vv~~GDs~ND~~Ml~~~~~~~---~g~~v~v~na~~-----~~~A~~~~-~~~~~v~~~l~~~~~~~~~~~ 286 (288)
+++++| .||.+|..+++++. .|+.+ +.|+.. -..|-..- .+.++|++.++++-..-+++|
T Consensus 475 NIi~vG--~n~~Dm~~Avn~l~e~gGGivv-v~~Gev~~~lpLpiaGLmSd~~~eeVae~~~~L~~a~~~lG 543 (584)
T COG1001 475 NIIVVG--VNDEDMALAVNRLKEIGGGIVV-VENGEVLEELPLPIAGLMSDEPAEEVAEKLEKLREAARELG 543 (584)
T ss_pred cEEEEe--CCHHHHHHHHHHHHhcCCcEEE-EECCEEEEEecccccccccCCCHHHHHHHHHHHHHHHHHhC
Confidence 999999 48999999998864 34443 344432 24554332 357899999999877766666
No 432
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=20.08 E-value=4.3e+02 Score=22.37 Aligned_cols=9 Identities=33% Similarity=0.600 Sum_probs=4.6
Q ss_pred cEEEEEecC
Q 040896 21 KIVVFLDYD 29 (288)
Q Consensus 21 ~~li~~DlD 29 (288)
..++++|+|
T Consensus 160 ~~li~~di~ 168 (233)
T cd04723 160 EELIVLDID 168 (233)
T ss_pred CeEEEEEcC
Confidence 345555553
Done!