Query 040899
Match_columns 155
No_of_seqs 101 out of 1088
Neff 9.6
Searched_HMMs 46136
Date Fri Mar 29 12:55:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040899.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040899hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK09481 sspA stringent starva 100.0 5.2E-32 1.1E-36 193.3 16.0 147 1-148 23-205 (211)
2 TIGR00862 O-ClC intracellular 100.0 5.3E-31 1.1E-35 189.9 15.9 154 1-155 23-230 (236)
3 PLN02378 glutathione S-transfe 100.0 3.7E-30 8.1E-35 184.0 14.5 150 1-151 24-205 (213)
4 KOG0406 Glutathione S-transfer 100.0 6.7E-30 1.4E-34 180.8 14.5 155 1-155 22-221 (231)
5 PRK10542 glutathionine S-trans 100.0 2E-29 4.3E-34 178.4 13.4 145 1-146 12-198 (201)
6 PLN02473 glutathione S-transfe 100.0 5.3E-29 1.2E-33 177.9 15.5 144 1-145 15-211 (214)
7 PLN02395 glutathione S-transfe 100.0 4.7E-29 1E-33 178.3 15.0 144 1-145 14-210 (215)
8 PRK13972 GSH-dependent disulfi 100.0 3.4E-29 7.4E-34 179.2 13.7 145 1-146 13-206 (215)
9 PLN02817 glutathione dehydroge 100.0 7.9E-29 1.7E-33 181.9 15.2 151 1-153 77-259 (265)
10 TIGR01262 maiA maleylacetoacet 100.0 3.5E-28 7.5E-33 173.2 15.2 145 1-146 12-205 (210)
11 PTZ00057 glutathione s-transfe 100.0 6.1E-28 1.3E-32 171.6 13.7 144 1-147 17-201 (205)
12 KOG0868 Glutathione S-transfer 100.0 5.6E-28 1.2E-32 162.6 11.2 146 1-147 18-209 (217)
13 PRK10357 putative glutathione 100.0 2E-27 4.2E-32 168.5 13.3 143 1-145 13-200 (202)
14 PRK15113 glutathione S-transfe 100.0 4.4E-27 9.4E-32 168.2 14.3 145 1-147 20-210 (214)
15 PRK11752 putative S-transferas 99.9 7.4E-27 1.6E-31 171.8 15.3 146 1-147 56-260 (264)
16 COG0625 Gst Glutathione S-tran 99.9 1.1E-26 2.4E-31 165.7 14.7 139 1-140 13-199 (211)
17 PRK10387 glutaredoxin 2; Provi 99.9 2.1E-24 4.6E-29 153.7 12.2 137 1-140 13-208 (210)
18 KOG0867 Glutathione S-transfer 99.9 9.2E-24 2E-28 152.1 13.2 145 1-146 15-210 (226)
19 KOG4420 Uncharacterized conser 99.9 1.1E-23 2.3E-28 149.5 11.8 149 1-150 39-292 (325)
20 TIGR02182 GRXB Glutaredoxin, G 99.9 5.4E-23 1.2E-27 146.6 12.9 137 1-140 12-207 (209)
21 KOG1422 Intracellular Cl- chan 99.9 8E-23 1.7E-27 141.1 13.0 153 1-154 25-214 (221)
22 KOG1695 Glutathione S-transfer 99.9 1.4E-22 3E-27 142.5 12.3 144 3-147 18-202 (206)
23 PLN02907 glutamate-tRNA ligase 99.8 1.8E-18 3.9E-23 141.3 12.9 119 2-138 15-159 (722)
24 cd03061 GST_N_CLIC GST_N famil 99.7 1E-17 2.2E-22 103.6 6.8 62 1-63 26-87 (91)
25 PF13417 GST_N_3: Glutathione 99.7 8.8E-17 1.9E-21 96.7 6.4 63 1-64 11-73 (75)
26 cd03052 GST_N_GDAP1 GST_N fami 99.7 1.4E-16 3.1E-21 95.3 6.0 58 1-59 13-73 (73)
27 cd03059 GST_N_SspA GST_N famil 99.6 1.2E-15 2.5E-20 91.1 6.9 61 1-62 13-73 (73)
28 cd03046 GST_N_GTT1_like GST_N 99.6 1.4E-15 2.9E-20 91.5 6.9 62 1-63 12-76 (76)
29 cd03198 GST_C_CLIC GST_C famil 99.6 4.3E-15 9.4E-20 98.3 9.8 96 59-154 9-133 (134)
30 cd03057 GST_N_Beta GST_N famil 99.6 1.4E-15 3E-20 91.8 6.5 62 1-63 12-77 (77)
31 cd03048 GST_N_Ure2p_like GST_N 99.6 1.6E-15 3.4E-20 92.5 6.7 63 1-64 13-81 (81)
32 cd03058 GST_N_Tau GST_N family 99.6 1.7E-15 3.8E-20 90.7 6.6 62 1-62 13-74 (74)
33 cd03050 GST_N_Theta GST_N fami 99.6 3.1E-15 6.7E-20 90.1 6.7 61 1-62 13-76 (76)
34 cd03184 GST_C_Omega GST_C fami 99.6 6.4E-15 1.4E-19 96.8 8.8 101 53-154 8-122 (124)
35 cd03076 GST_N_Pi GST_N family, 99.6 1.4E-15 3.1E-20 90.9 4.8 59 1-60 14-72 (73)
36 cd03045 GST_N_Delta_Epsilon GS 99.6 3.3E-15 7.3E-20 89.3 6.2 59 1-60 13-74 (74)
37 cd03043 GST_N_1 GST_N family, 99.6 4.2E-15 9.1E-20 88.9 6.1 58 1-59 14-73 (73)
38 PF13409 GST_N_2: Glutathione 99.6 4.1E-15 9E-20 88.2 6.0 59 1-60 6-69 (70)
39 cd03053 GST_N_Phi GST_N family 99.6 5E-15 1.1E-19 89.1 6.4 59 1-60 14-75 (76)
40 cd03060 GST_N_Omega_like GST_N 99.6 4.8E-15 1E-19 88.1 6.1 57 1-58 13-70 (71)
41 cd03044 GST_N_EF1Bgamma GST_N 99.6 4.9E-15 1.1E-19 89.0 6.0 59 1-60 13-74 (75)
42 cd03201 GST_C_DHAR GST_C famil 99.6 1.9E-14 4.1E-19 94.2 8.8 94 60-154 13-119 (121)
43 cd03047 GST_N_2 GST_N family, 99.6 8.5E-15 1.9E-19 87.5 6.0 58 1-59 13-73 (73)
44 cd03190 GST_C_ECM4_like GST_C 99.6 4.6E-14 1E-18 94.9 9.9 83 72-154 31-127 (142)
45 cd03039 GST_N_Sigma_like GST_N 99.6 5.7E-15 1.2E-19 88.0 4.8 59 1-60 13-72 (72)
46 cd03185 GST_C_Tau GST_C family 99.5 3.7E-14 8.1E-19 93.1 8.6 82 73-154 30-124 (126)
47 PF02798 GST_N: Glutathione S- 99.5 1.9E-14 4E-19 86.7 6.5 59 2-60 14-76 (76)
48 cd03075 GST_N_Mu GST_N family, 99.5 2E-14 4.3E-19 87.9 6.4 61 1-62 13-82 (82)
49 cd03038 GST_N_etherase_LigE GS 99.5 2E-14 4.2E-19 88.2 5.7 61 1-63 20-84 (84)
50 cd03056 GST_N_4 GST_N family, 99.5 2.6E-14 5.6E-19 85.1 6.0 58 1-59 13-73 (73)
51 cd03042 GST_N_Zeta GST_N famil 99.5 2.7E-14 5.9E-19 85.1 6.0 58 1-59 13-73 (73)
52 cd03041 GST_N_2GST_N GST_N fam 99.5 3E-14 6.6E-19 86.0 5.8 61 1-62 14-77 (77)
53 cd03049 GST_N_3 GST_N family, 99.5 2.9E-14 6.3E-19 85.1 5.5 58 1-59 13-73 (73)
54 KOG4244 Failed axon connection 99.5 1.7E-13 3.7E-18 98.2 9.8 127 1-135 65-272 (281)
55 cd03188 GST_C_Beta GST_C famil 99.5 1.3E-13 2.8E-18 88.8 8.0 70 74-143 39-114 (114)
56 cd03209 GST_C_Mu GST_C family, 99.5 1.2E-13 2.6E-18 90.3 7.8 76 73-148 30-112 (121)
57 cd03077 GST_N_Alpha GST_N fami 99.5 9.6E-14 2.1E-18 84.2 6.2 59 1-63 14-77 (79)
58 PF00043 GST_C: Glutathione S- 99.5 1.5E-13 3.2E-18 85.9 7.3 65 73-137 23-95 (95)
59 cd03207 GST_C_8 GST_C family, 99.5 1.3E-13 2.8E-18 87.5 6.9 71 75-145 27-102 (103)
60 KOG3027 Mitochondrial outer me 99.5 8.8E-13 1.9E-17 91.4 11.4 126 3-135 40-247 (257)
61 cd03055 GST_N_Omega GST_N fami 99.5 8.8E-14 1.9E-18 86.3 5.8 58 1-59 31-89 (89)
62 KOG3029 Glutathione S-transfer 99.5 1.1E-12 2.4E-17 94.9 11.4 133 1-136 103-355 (370)
63 cd03187 GST_C_Phi GST_C family 99.5 3E-13 6.4E-18 87.7 7.8 71 73-143 40-118 (118)
64 cd03051 GST_N_GTT2_like GST_N 99.5 1.2E-13 2.6E-18 82.3 5.4 58 1-59 13-74 (74)
65 cd03196 GST_C_5 GST_C family, 99.5 2.9E-13 6.3E-18 87.8 7.5 69 75-143 38-115 (115)
66 cd03080 GST_N_Metaxin_like GST 99.5 1.8E-13 3.8E-18 82.2 5.9 55 1-63 21-75 (75)
67 cd03186 GST_C_SspA GST_N famil 99.5 5.2E-13 1.1E-17 85.3 8.1 70 73-142 30-106 (107)
68 COG0435 ECM4 Predicted glutath 99.4 1.6E-13 3.5E-18 98.9 5.5 109 37-145 129-286 (324)
69 cd03037 GST_N_GRX2 GST_N famil 99.4 3E-13 6.4E-18 80.3 5.6 58 1-60 13-71 (71)
70 PF13410 GST_C_2: Glutathione 99.4 9.8E-13 2.1E-17 77.5 7.8 59 74-132 2-69 (69)
71 cd03210 GST_C_Pi GST_C family, 99.4 5.3E-13 1.2E-17 87.9 7.3 74 74-147 31-114 (126)
72 cd03208 GST_C_Alpha GST_C fami 99.4 6.5E-13 1.4E-17 88.7 7.6 71 77-147 38-117 (137)
73 cd03178 GST_C_Ure2p_like GST_C 99.4 6.3E-13 1.4E-17 85.6 7.0 71 73-143 35-112 (113)
74 cd03203 GST_C_Lambda GST_C fam 99.4 1E-12 2.3E-17 85.8 7.2 71 82-153 34-119 (120)
75 cd03177 GST_C_Delta_Epsilon GS 99.4 1.4E-12 3.1E-17 84.8 7.5 71 74-144 34-111 (118)
76 cd03191 GST_C_Zeta GST_C famil 99.4 1.6E-12 3.5E-17 84.8 7.4 70 77-146 43-120 (121)
77 cd03181 GST_C_EFB1gamma GST_C 99.4 2.4E-12 5.2E-17 84.1 7.9 75 73-147 35-118 (123)
78 cd03183 GST_C_Theta GST_C fami 99.4 2.5E-12 5.3E-17 84.5 7.6 72 73-144 40-121 (126)
79 cd03180 GST_C_2 GST_C family, 99.4 2.7E-12 5.9E-17 82.1 7.1 66 74-139 39-110 (110)
80 cd03206 GST_C_7 GST_C family, 99.4 3E-12 6.5E-17 80.9 7.1 65 75-139 30-100 (100)
81 cd03204 GST_C_GDAP1 GST_C fami 99.4 2.7E-12 5.8E-17 82.5 6.7 68 72-139 23-111 (111)
82 cd03040 GST_N_mPGES2 GST_N fam 99.3 1.8E-12 4E-17 78.0 5.0 60 1-63 14-77 (77)
83 cd03189 GST_C_GTT1_like GST_C 99.3 5.6E-12 1.2E-16 81.9 7.2 64 74-137 50-119 (119)
84 cd03054 GST_N_Metaxin GST_N fa 99.3 3.5E-12 7.7E-17 75.8 5.7 53 1-61 20-72 (72)
85 cd03182 GST_C_GTT2_like GST_C 99.3 6.4E-12 1.4E-16 81.3 7.0 67 73-139 44-117 (117)
86 cd00570 GST_N_family Glutathio 99.3 9.8E-12 2.1E-16 72.6 6.0 58 1-59 13-71 (71)
87 cd03194 GST_C_3 GST_C family, 99.3 1.9E-11 4.2E-16 79.1 7.8 68 76-144 39-113 (114)
88 cd03079 GST_N_Metaxin2 GST_N f 99.3 1.6E-11 3.6E-16 73.0 6.2 53 2-61 22-74 (74)
89 KOG2903 Predicted glutathione 99.2 8.4E-12 1.8E-16 89.4 4.4 108 37-144 123-287 (319)
90 cd03195 GST_C_4 GST_C family, 99.2 6E-11 1.3E-15 76.8 7.1 69 75-144 39-112 (114)
91 PF14497 GST_C_3: Glutathione 99.2 4.2E-11 9.1E-16 75.5 5.7 63 73-135 30-99 (99)
92 cd03193 GST_C_Metaxin GST_C fa 99.2 1.2E-10 2.7E-15 71.8 7.7 60 75-134 16-88 (88)
93 cd03202 GST_C_etherase_LigE GS 99.2 6E-11 1.3E-15 77.9 6.5 61 75-135 55-123 (124)
94 cd03179 GST_C_1 GST_C family, 99.2 8.7E-11 1.9E-15 74.5 7.0 62 73-134 38-105 (105)
95 cd03200 GST_C_JTV1 GST_C famil 99.1 1.4E-10 3E-15 72.9 6.2 57 79-135 36-95 (96)
96 COG2999 GrxB Glutaredoxin 2 [P 99.1 4.5E-10 9.8E-15 76.4 8.9 136 2-140 14-208 (215)
97 cd00299 GST_C_family Glutathio 99.1 3.6E-10 7.8E-15 70.5 7.0 61 73-133 31-100 (100)
98 cd03211 GST_C_Metaxin2 GST_C f 99.1 8.1E-10 1.7E-14 72.8 7.1 61 74-134 53-126 (126)
99 cd03192 GST_C_Sigma_like GST_C 99.0 9.7E-10 2.1E-14 69.6 6.1 61 73-133 34-104 (104)
100 cd03212 GST_C_Metaxin1_3 GST_C 99.0 3E-09 6.5E-14 71.0 7.4 62 74-135 60-134 (137)
101 cd03205 GST_C_6 GST_C family, 98.9 9.8E-09 2.1E-13 64.5 6.9 58 73-133 32-98 (98)
102 KOG3028 Translocase of outer m 98.8 3.8E-07 8.3E-12 67.4 13.1 126 2-135 22-233 (313)
103 cd03197 GST_C_mPGES2 GST_C fam 98.8 2.5E-08 5.4E-13 66.9 6.2 58 78-135 79-145 (149)
104 PF14834 GST_C_4: Glutathione 98.5 6.4E-07 1.4E-11 57.1 7.3 72 73-145 38-114 (117)
105 cd03078 GST_N_Metaxin1_like GS 98.5 3.5E-07 7.5E-12 54.4 5.8 52 2-61 21-72 (73)
106 TIGR02190 GlrX-dom Glutaredoxi 98.3 1.5E-06 3.3E-11 52.4 4.7 58 1-59 22-79 (79)
107 cd03029 GRX_hybridPRX5 Glutare 98.0 2.5E-05 5.5E-10 46.0 5.7 57 2-59 16-72 (72)
108 PRK10638 glutaredoxin 3; Provi 98.0 1.8E-05 3.9E-10 48.1 4.9 58 1-59 16-74 (83)
109 PF04399 Glutaredoxin2_C: Glut 97.8 0.00025 5.4E-09 46.9 8.2 65 75-140 56-125 (132)
110 PF10568 Tom37: Outer mitochon 97.6 0.00025 5.4E-09 42.0 5.6 49 2-58 19-71 (72)
111 cd03027 GRX_DEP Glutaredoxin ( 97.5 0.00023 5.1E-09 42.0 4.4 54 1-55 15-69 (73)
112 cd02066 GRX_family Glutaredoxi 97.4 0.00034 7.4E-09 40.4 4.6 56 1-57 14-70 (72)
113 cd02976 NrdH NrdH-redoxin (Nrd 97.4 0.00025 5.4E-09 41.2 3.7 49 2-51 15-64 (73)
114 TIGR02196 GlrX_YruB Glutaredox 97.2 0.00074 1.6E-08 39.2 4.3 56 2-58 15-73 (74)
115 cd03199 GST_C_GRX2 GST_C famil 97.1 0.0019 4.1E-08 42.4 6.0 62 77-139 59-125 (128)
116 PRK10329 glutaredoxin-like pro 97.0 0.0016 3.6E-08 39.3 4.4 47 2-49 16-62 (81)
117 cd03418 GRX_GRXb_1_3_like Glut 97.0 0.0027 5.9E-08 37.3 5.0 58 2-59 15-73 (75)
118 KOG1147 Glutamyl-tRNA syntheta 96.8 0.0014 3E-08 52.4 3.8 66 80-145 90-164 (712)
119 TIGR02181 GRX_bact Glutaredoxi 96.8 0.0039 8.5E-08 37.1 5.0 58 2-60 14-72 (79)
120 TIGR02200 GlrX_actino Glutared 96.4 0.0085 1.9E-07 35.1 4.5 57 1-58 14-75 (77)
121 TIGR02194 GlrX_NrdH Glutaredox 96.2 0.0084 1.8E-07 35.1 3.6 44 1-46 13-57 (72)
122 PF00462 Glutaredoxin: Glutare 96.2 0.0053 1.2E-07 34.6 2.6 46 2-48 14-60 (60)
123 COG0695 GrxC Glutaredoxin and 96.0 0.03 6.5E-07 33.7 5.3 54 2-56 16-72 (80)
124 cd03028 GRX_PICOT_like Glutare 95.9 0.031 6.6E-07 34.3 5.2 56 2-58 28-84 (90)
125 cd03419 GRX_GRXh_1_2_like Glut 95.9 0.044 9.5E-07 32.5 5.9 58 2-60 15-76 (82)
126 PRK11200 grxA glutaredoxin 1; 95.6 0.056 1.2E-06 32.6 5.4 62 2-63 16-84 (85)
127 TIGR00365 monothiol glutaredox 95.3 0.065 1.4E-06 33.4 5.3 56 2-58 32-88 (97)
128 TIGR02183 GRXA Glutaredoxin, G 94.8 0.14 2.9E-06 31.1 5.6 62 2-63 15-83 (86)
129 TIGR02180 GRX_euk Glutaredoxin 94.7 0.17 3.7E-06 30.0 5.9 58 2-60 14-77 (84)
130 TIGR02189 GlrX-like_plant Glut 94.7 0.13 2.8E-06 32.2 5.3 55 2-57 23-81 (99)
131 PHA03050 glutaredoxin; Provisi 94.2 0.26 5.7E-06 31.4 6.0 54 2-56 28-88 (108)
132 cd03031 GRX_GRX_like Glutaredo 93.5 0.22 4.8E-06 33.6 5.0 58 1-58 20-81 (147)
133 PF11801 Tom37_C: Tom37 C-term 93.2 0.15 3.3E-06 35.2 3.9 42 83-124 113-159 (168)
134 PF11287 DUF3088: Protein of u 93.1 0.31 6.7E-06 31.2 4.8 50 14-63 44-108 (112)
135 cd03030 GRX_SH3BGR Glutaredoxi 92.2 0.44 9.5E-06 29.5 4.6 55 1-56 20-79 (92)
136 PF09635 MetRS-N: MetRS-N bind 91.2 0.56 1.2E-05 30.5 4.4 29 36-64 34-64 (122)
137 KOG1668 Elongation factor 1 be 89.1 0.39 8.4E-06 34.7 2.6 58 84-141 10-69 (231)
138 KOG1752 Glutaredoxin and relat 89.0 1.2 2.7E-05 28.2 4.6 57 2-59 29-89 (104)
139 PRK10824 glutaredoxin-4; Provi 87.3 2.1 4.6E-05 27.6 4.9 56 2-58 35-91 (115)
140 PTZ00062 glutaredoxin; Provisi 83.0 3.1 6.7E-05 29.7 4.6 56 2-58 133-189 (204)
141 PRK12759 bifunctional gluaredo 79.1 5.7 0.00012 31.5 5.4 54 2-56 17-79 (410)
142 PF04908 SH3BGR: SH3-binding, 77.2 6 0.00013 24.8 4.0 56 1-57 21-86 (99)
143 TIGR02681 phage_pRha phage reg 64.4 8.4 0.00018 24.5 2.7 27 38-64 2-29 (108)
144 COG4545 Glutaredoxin-related p 61.6 19 0.00042 21.4 3.6 45 5-49 20-77 (85)
145 PRK09266 hypothetical protein; 58.5 15 0.00031 27.1 3.5 56 6-62 200-258 (266)
146 PF13192 Thioredoxin_3: Thiore 57.1 36 0.00079 19.7 5.2 43 4-51 21-63 (76)
147 TIGR00412 redox_disulf_2 small 55.7 39 0.00084 19.6 4.8 41 4-49 21-61 (76)
148 cd06891 PX_Vps17p The phosphoi 51.9 14 0.00031 24.7 2.3 31 120-154 108-138 (140)
149 PRK15371 effector protein YopJ 42.2 40 0.00086 25.5 3.5 42 77-119 22-63 (287)
150 PF09868 DUF2095: Uncharacteri 40.9 15 0.00032 23.8 0.9 56 6-61 31-90 (128)
151 TIGR01764 excise DNA binding d 40.1 52 0.0011 16.5 3.0 24 36-59 25-48 (49)
152 cd02973 TRX_GRX_like Thioredox 37.6 73 0.0016 17.5 4.4 35 11-49 30-64 (67)
153 cd00449 PLPDE_IV PyridoxaL 5'- 37.4 37 0.00081 24.6 2.8 55 6-61 196-255 (256)
154 PRK06092 4-amino-4-deoxychoris 36.9 48 0.0011 24.3 3.3 55 6-62 208-265 (268)
155 cd01557 BCAT_beta_family BCAT_ 36.3 26 0.00057 26.0 1.9 56 5-61 210-272 (279)
156 TIGR01616 nitro_assoc nitrogen 34.3 33 0.00071 22.4 1.9 20 1-20 15-34 (126)
157 PRK13356 aminotransferase; Pro 33.6 44 0.00094 24.9 2.7 53 6-60 221-276 (286)
158 KOG2824 Glutaredoxin-related p 33.3 64 0.0014 24.3 3.3 56 2-57 152-211 (281)
159 PRK06606 branched-chain amino 32.8 45 0.00097 25.2 2.6 55 5-60 227-286 (306)
160 PF03421 YopJ: YopJ Serine/Thr 32.0 73 0.0016 22.2 3.4 38 81-119 2-39 (177)
161 PRK07544 branched-chain amino 31.9 47 0.001 24.8 2.6 54 5-60 224-280 (292)
162 COG0278 Glutaredoxin-related p 31.9 1.4E+02 0.003 18.9 4.3 56 2-59 35-93 (105)
163 PF11732 Thoc2: Transcription- 31.6 65 0.0014 19.2 2.6 34 98-134 35-76 (77)
164 COG3646 Uncharacterized phage- 31.4 44 0.00096 23.1 2.1 21 44-64 10-30 (167)
165 cd01659 TRX_superfamily Thiore 31.0 75 0.0016 15.9 2.8 33 10-43 27-59 (69)
166 COG1393 ArsC Arsenate reductas 30.3 69 0.0015 20.6 2.8 20 1-20 15-34 (117)
167 PRK07650 4-amino-4-deoxychoris 29.9 62 0.0014 24.0 3.0 54 6-60 212-269 (283)
168 cd03033 ArsC_15kD Arsenate Red 29.9 41 0.00089 21.4 1.7 20 1-20 14-33 (113)
169 PF11417 Inhibitor_G39P: Loade 29.8 1.2E+02 0.0026 17.7 3.8 58 50-111 5-69 (71)
170 cd03035 ArsC_Yffb Arsenate Red 29.0 47 0.001 20.8 1.9 20 1-20 13-32 (105)
171 PF06075 DUF936: Plant protein 28.7 1E+02 0.0023 25.8 4.2 53 86-145 502-558 (579)
172 cd02977 ArsC_family Arsenate R 28.6 49 0.0011 20.5 1.9 20 1-20 13-32 (105)
173 PF03514 GRAS: GRAS domain fam 28.3 1.8E+02 0.004 22.8 5.4 136 2-142 164-327 (374)
174 TIGR01121 D_amino_aminoT D-ami 27.7 65 0.0014 23.9 2.7 56 4-60 209-269 (276)
175 TIGR01122 ilvE_I branched-chai 27.5 64 0.0014 24.2 2.7 53 6-59 220-277 (298)
176 PF05768 DUF836: Glutaredoxin- 27.0 1.4E+02 0.003 17.4 4.1 32 11-45 26-57 (81)
177 cd03036 ArsC_like Arsenate Red 27.0 50 0.0011 20.8 1.8 21 1-21 13-33 (111)
178 PRK10853 putative reductase; P 25.1 57 0.0012 21.0 1.8 20 1-20 14-33 (118)
179 PF03960 ArsC: ArsC family; I 24.4 56 0.0012 20.4 1.6 20 1-20 10-29 (110)
180 PF01063 Aminotran_4: Aminotra 24.2 57 0.0012 23.1 1.8 56 4-61 172-230 (231)
181 TIGR02508 type_III_yscG type I 23.6 2.1E+02 0.0045 18.3 4.0 49 100-148 60-111 (115)
182 PRK12400 D-amino acid aminotra 23.2 1E+02 0.0022 23.0 3.1 55 6-61 218-277 (290)
183 PRK10026 arsenate reductase; P 23.1 66 0.0014 21.5 1.8 20 1-20 16-35 (141)
184 PRK13344 spxA transcriptional 22.1 1.3E+02 0.0027 19.8 3.0 21 1-21 14-34 (132)
185 PRK12559 transcriptional regul 21.6 1.2E+02 0.0025 19.9 2.8 21 1-21 14-34 (131)
186 cd03032 ArsC_Spx Arsenate Redu 21.6 77 0.0017 20.0 1.9 20 1-20 14-33 (115)
187 PRK07849 4-amino-4-deoxychoris 21.4 1.2E+02 0.0025 22.8 3.1 53 6-60 227-282 (292)
188 PF07862 Nif11: Nitrogen fixat 21.3 1E+02 0.0023 16.1 2.1 22 124-145 4-25 (49)
189 PRK01655 spxA transcriptional 21.0 82 0.0018 20.6 1.9 20 1-20 14-33 (131)
190 COG1535 EntB Isochorismate hyd 20.7 2E+02 0.0043 20.5 3.7 39 79-119 151-190 (218)
191 PF09314 DUF1972: Domain of un 20.3 1.1E+02 0.0024 21.5 2.5 20 44-63 154-173 (185)
No 1
>PRK09481 sspA stringent starvation protein A; Provisional
Probab=100.00 E-value=5.2e-32 Score=193.26 Aligned_cols=147 Identities=27% Similarity=0.382 Sum_probs=126.4
Q ss_pred ChHHhHHHHhCCCceeEecCCCCCChhhhhcCCCCCccceEEeCCeeeeehHHHHHHHHHhCcc----------------
Q 040899 1 MRVRIALAEKGIEYEYREQNLLNKGPMLLQMNRVHKKVPVLIHNGKPICESTNIVQYIDEIHTD---------------- 64 (155)
Q Consensus 1 ~r~~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~~~g~~i~es~aI~~yL~~~~~~---------------- 64 (155)
+|++++|+++|++|+.+.+++.+.+++|+++||. |+||+|+++|.+++||.||++||++.+|.
T Consensus 23 ~rv~~~L~e~gl~~e~~~v~~~~~~~~~~~~nP~-g~VPvL~~~g~~l~ES~AIl~YL~~~~~~~~l~p~~~~~ra~~~~ 101 (211)
T PRK09481 23 HQVRIVLAEKGVSVEIEQVEKDNLPQDLIDLNPY-QSVPTLVDRELTLYESRIIMEYLDERFPHPPLMPVYPVARGESRL 101 (211)
T ss_pred HHHHHHHHHCCCCCEEEeCCcccCCHHHHHhCCC-CCCCEEEECCEEeeCHHHHHHHHHHhCCCCCCCCCCHHHHHHHHH
Confidence 5899999999999999999988888999999998 99999999999999999999999999874
Q ss_pred hHHHH------------hhchHHHHHHHHHHHHHHHHHHHhcCCCCcccCCCcChhhhhHHHHHhHH------h--hhCh
Q 040899 65 GREMR------------AVKLERQEEMTKEFIAILKTLEEELGDKPHFEGENFGFVDVSLIPLYCWL------E--TECP 124 (155)
Q Consensus 65 ~~~~~------------~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aD~~~~~~l~~~------~--~~~p 124 (155)
|.... ...+...+...+.+.+.++.+|++|.+++|++|+++|+||+++++.+.++ . ..+|
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~le~~L~~~~~l~G~~~t~AD~~l~~~~~~~~~~~~~~~~~~~p 181 (211)
T PRK09481 102 MMHRIEKDWYSLMNKIVNGSASEADAARKQLREELLAIAPVFGEKPYFMSEEFSLVDCYLAPLLWRLPVLGIELSGPGAK 181 (211)
T ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHhccCCcccCCCccHHHHHHHHHHHHHHhcCCCCCCCCCh
Confidence 11110 01123455667788899999999999899999999999999999999876 2 4689
Q ss_pred hHHHHHHHhcchhhHHhhcchhhH
Q 040899 125 KIIAWAKRCTQRKSVSKSLKDEKK 148 (155)
Q Consensus 125 ~l~~~~~~~~~~~~~~~~~~~~~~ 148 (155)
+|.+|++++.++|++++++...++
T Consensus 182 ~l~~w~~~~~~rp~~~~~~~~~~~ 205 (211)
T PRK09481 182 ELKGYMTRVFERDSFLASLTEAER 205 (211)
T ss_pred hHHHHHHHHhccHHHHHHcCHHHH
Confidence 999999999999999999887544
No 2
>TIGR00862 O-ClC intracellular chloride channel protein. These proteins are thought to function in the regulation of the membrane potential and in transepithelial ion absorption and secretion in the kidney.
Probab=99.97 E-value=5.3e-31 Score=189.88 Aligned_cols=154 Identities=17% Similarity=0.256 Sum_probs=132.4
Q ss_pred ChHHhHHHHhCCCceeEecCCCCCChhhhhcCCCCCccceEEeCCeeeeehHHHHHHHHHhCcc----------------
Q 040899 1 MRVRIALAEKGIEYEYREQNLLNKGPMLLQMNRVHKKVPVLIHNGKPICESTNIVQYIDEIHTD---------------- 64 (155)
Q Consensus 1 ~r~~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~~~g~~i~es~aI~~yL~~~~~~---------------- 64 (155)
||++++|.++|++|+.+.+++..++++|+++||. |+||+|+++|.+++||.+|++||++.++.
T Consensus 23 ~rv~i~L~ekgi~~e~~~vd~~~~~~~fl~inP~-g~vPvL~~~g~~l~ES~aI~eYL~e~~~~~~~p~l~p~~~~~~~~ 101 (236)
T TIGR00862 23 QRLFMILWLKGVVFNVTTVDLKRKPEDLQNLAPG-THPPFLTYNTEVKTDVNKIEEFLEETLCPPRYPKLSPKHPESNTA 101 (236)
T ss_pred HHHHHHHHHcCCCcEEEEECCCCCCHHHHHHCcC-CCCCEEEECCEEeecHHHHHHHHHHHcCCCCCCCCCCCCHHHHHH
Confidence 6899999999999999999999888999999998 99999999999999999999999998752
Q ss_pred ----hH---HHHhhc-hHHHHHHHHHHHHHHHHHHHhcC------------------CCCcccCCCcChhhhhHHHHHhH
Q 040899 65 ----GR---EMRAVK-LERQEEMTKEFIAILKTLEEELG------------------DKPHFEGENFGFVDVSLIPLYCW 118 (155)
Q Consensus 65 ----~~---~~~~~~-~~~~~~~~~~~~~~l~~le~~L~------------------~~~~l~G~~~t~aD~~~~~~l~~ 118 (155)
+. .++... +...+...+.+.+.++.||++|. +++|+.|+++|+|||++++.+.+
T Consensus 102 ~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Le~~L~~~~~~~~~~~~~~~~~~~~~~f~~Gd~~tlaD~~l~p~l~~ 181 (236)
T TIGR00862 102 GLDIFAKFSAYIKNSNPEANDNLEKGLLKALKKLDDYLNSPLPEEIDEDSAEDEKVSRRKFLDGDELTLADCNLLPKLHI 181 (236)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccCCCcccCCccchhhHHHHHHHHH
Confidence 00 011111 23344455668999999999996 57999999999999999999977
Q ss_pred H------------hhhChhHHHHHHHhcchhhHHhhcchhhHHhhhhhC
Q 040899 119 L------------ETECPKIIAWAKRCTQRKSVSKSLKDEKKVLGFVQR 155 (155)
Q Consensus 119 ~------------~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (155)
+ .+++|+|.+|++++.++|+|+.+++..+++...+++
T Consensus 182 l~~~~~~~~~~~i~~~~p~l~~w~~~~~~~~sf~~t~p~~~~i~~~~~~ 230 (236)
T TIGR00862 182 VKVVAKKYRNFDIPAEFTGVWRYLSNAYAREEFTNTCPDDKEIELAYAD 230 (236)
T ss_pred HHHHHHHHhCcCccccCchHHHHHHHHhccchHHhhCCChHHHHHHHHH
Confidence 6 478999999999999999999999999999887764
No 3
>PLN02378 glutathione S-transferase DHAR1
Probab=99.97 E-value=3.7e-30 Score=183.98 Aligned_cols=150 Identities=27% Similarity=0.350 Sum_probs=124.7
Q ss_pred ChHHhHHHHhCCCceeEecCCCCCChhhhhcCCCCCccceEEeCCeeeeehHHHHHHHHHhCcc-----------h----
Q 040899 1 MRVRIALAEKGIEYEYREQNLLNKGPMLLQMNRVHKKVPVLIHNGKPICESTNIVQYIDEIHTD-----------G---- 65 (155)
Q Consensus 1 ~r~~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~~~g~~i~es~aI~~yL~~~~~~-----------~---- 65 (155)
+|++++|+++|++|+.+.+++..++++|+++||. |+||+|+++|.+++||.+|++||++.++. .
T Consensus 24 ~rv~~~L~e~gl~~e~~~v~~~~~~~~~l~inP~-G~VPvL~~~~~~l~ES~aI~~YL~~~~~~~~l~~~~~~a~i~~~~ 102 (213)
T PLN02378 24 QRALLTLEEKSLTYKIHLINLSDKPQWFLDISPQ-GKVPVLKIDDKWVTDSDVIVGILEEKYPDPPLKTPAEFASVGSNI 102 (213)
T ss_pred HHHHHHHHHcCCCCeEEEeCcccCCHHHHHhCCC-CCCCEEEECCEEecCHHHHHHHHHHhCCCCCCCCHHHHHHHHHHH
Confidence 5899999999999999999998888899999998 99999999999999999999999998875 0
Q ss_pred HHHH---hhchHHHHHHHHHHHHHHHHHHHhcC--CCCcccCCCcChhhhhHHHHHhHH------------hhhChhHHH
Q 040899 66 REMR---AVKLERQEEMTKEFIAILKTLEEELG--DKPHFEGENFGFVDVSLIPLYCWL------------ETECPKIIA 128 (155)
Q Consensus 66 ~~~~---~~~~~~~~~~~~~~~~~l~~le~~L~--~~~~l~G~~~t~aD~~~~~~l~~~------------~~~~p~l~~ 128 (155)
...+ .......+...+.+.+.|+.+|++|+ +++|++|+++|+||+++++.+.++ ...||++.+
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~fl~Gd~~T~ADi~l~~~~~~l~~~~~~~~~~~~~~~~p~l~~ 182 (213)
T PLN02378 103 FGTFGTFLKSKDSNDGSEHALLVELEALENHLKSHDGPFIAGERVSAVDLSLAPKLYHLQVALGHFKSWSVPESFPHVHN 182 (213)
T ss_pred HHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHhcCCCCCcCCCCCchhhHHHHHHHHHHHHHHHHhcCCCchhHhHHHHH
Confidence 0000 00111223444677888999999997 478999999999999999997653 267999999
Q ss_pred HHHHhcchhhHHhhcchhhHHhh
Q 040899 129 WAKRCTQRKSVSKSLKDEKKVLG 151 (155)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~ 151 (155)
|+++|.++|+++++++++.....
T Consensus 183 w~~~~~~rpa~~~~~~~~~~~~~ 205 (213)
T PLN02378 183 YMKTLFSLDSFEKTKTEEKYVIS 205 (213)
T ss_pred HHHHHhcCCCeecccCChHHHHH
Confidence 99999999999999988765544
No 4
>KOG0406 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=6.7e-30 Score=180.84 Aligned_cols=155 Identities=51% Similarity=0.749 Sum_probs=137.7
Q ss_pred ChHHhHHHHhCCCceeEecCCCCCChhhhhcCCCCCccceEEeCCeeeeehHHHHHHHHHhCcc----------------
Q 040899 1 MRVRIALAEKGIEYEYREQNLLNKGPMLLQMNRVHKKVPVLIHNGKPICESTNIVQYIDEIHTD---------------- 64 (155)
Q Consensus 1 ~r~~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~~~g~~i~es~aI~~yL~~~~~~---------------- 64 (155)
||++|+|..+||+|+.+..|+.++++++++.||-+++||+|+++|..++||..|++||++.++.
T Consensus 22 ~R~~iaL~~KgI~yE~veedl~~Ks~~ll~~np~hkKVPvL~Hn~k~i~ESliiveYiDe~w~~~~~iLP~DPy~Ra~ar 101 (231)
T KOG0406|consen 22 QRVRIALKLKGIPYEYVEEDLTNKSEWLLEKNPVHKKVPVLEHNGKPICESLIIVEYIDETWPSGPPILPSDPYERAQAR 101 (231)
T ss_pred HHHHHHHHhcCCceEEEecCCCCCCHHHHHhccccccCCEEEECCceehhhHHHHHHHHhhccCCCCCCCCCHHHHHHHH
Confidence 6999999999999999999999999999999976799999999999999999999999999983
Q ss_pred -hHHHH------------h-hchHHHHHHHHHHHHHHHHHHHhcC-CCCcccCCCcChhhhhHHHHHhHH----------
Q 040899 65 -GREMR------------A-VKLERQEEMTKEFIAILKTLEEELG-DKPHFEGENFGFVDVSLIPLYCWL---------- 119 (155)
Q Consensus 65 -~~~~~------------~-~~~~~~~~~~~~~~~~l~~le~~L~-~~~~l~G~~~t~aD~~~~~~l~~~---------- 119 (155)
|..++ . ...+..+...+.+...|..+|+.|. +++|+.|+++++.|+++++.+.+.
T Consensus 102 fwa~~id~~~~~~~~~~~~~~~~e~~~~~~~e~~e~l~~lE~el~k~k~~fgG~~~G~vDi~~~p~~~~~~~~~~~~~~~ 181 (231)
T KOG0406|consen 102 FWAEYIDKKVFFVGRFVVAAKGGEEQEAAKEELREALKVLEEELGKGKDFFGGETIGFVDIAIGPSFERWLAVLEKFGGV 181 (231)
T ss_pred HHHHHHHhHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCcCHhhhhHHhhHHHHHHHHHHhcCc
Confidence 22111 1 1246677888889999999999998 789999999999999999888776
Q ss_pred ----hhhChhHHHHHHHhcchhhHHhhcchhhHHhhhhhC
Q 040899 120 ----ETECPKIIAWAKRCTQRKSVSKSLKDEKKVLGFVQR 155 (155)
Q Consensus 120 ----~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (155)
...+|+|.+|.++|.+++.+++++++.+.+.+|+++
T Consensus 182 ~~~~~~~~P~L~~W~~~~~~~~~V~~~~p~~e~~~e~~~~ 221 (231)
T KOG0406|consen 182 KFIIEEETPKLIKWIKRMKEDEAVKAVLPDSEKVVEFMKK 221 (231)
T ss_pred ccCCCCCCccHHHHHHHHhcChhHHhhcCCHHHHHHHHHH
Confidence 568999999999999999999999999999988763
No 5
>PRK10542 glutathionine S-transferase; Provisional
Probab=99.97 E-value=2e-29 Score=178.44 Aligned_cols=145 Identities=23% Similarity=0.401 Sum_probs=121.0
Q ss_pred ChHHhHHHHhCCCceeEecCCC----CCChhhhhcCCCCCccceEE-eCCeeeeehHHHHHHHHHhCcc-----------
Q 040899 1 MRVRIALAEKGIEYEYREQNLL----NKGPMLLQMNRVHKKVPVLI-HNGKPICESTNIVQYIDEIHTD----------- 64 (155)
Q Consensus 1 ~r~~~~l~~~gi~~~~~~v~~~----~~~~~~~~~~p~~~~vP~l~-~~g~~i~es~aI~~yL~~~~~~----------- 64 (155)
+|++++|+++||+|+.+.+++. ...++|.++||. |+||+|+ +||.+++||.+|++||++.++.
T Consensus 12 ~~~~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~~nP~-g~vPvL~~~~g~~l~eS~aI~~YL~~~~~~~~l~~p~~~~~ 90 (201)
T PRK10542 12 LASHITLRESGLDFTLVSVDLAKKRLENGDDYLAINPK-GQVPALLLDDGTLLTEGVAIMQYLADSVPDRQLLAPVGSLS 90 (201)
T ss_pred HHHHHHHHHcCCCceEEEeecccccccCChHHHHhCcC-CCCCeEEeCCCcEeecHHHHHHHHHHhCcccccCCCCCcHH
Confidence 4789999999999999999875 245789999998 9999998 5889999999999999988753
Q ss_pred ------hHHHH------------hh-c-hHHHHHHHHHHHHHHHHHHHhcCCCCcccCCCcChhhhhHHHHHhHH-----
Q 040899 65 ------GREMR------------AV-K-LERQEEMTKEFIAILKTLEEELGDKPHFEGENFGFVDVSLIPLYCWL----- 119 (155)
Q Consensus 65 ------~~~~~------------~~-~-~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aD~~~~~~l~~~----- 119 (155)
+.... .. . +...+...+.+.+.++.+|+.|++++|++|+++|+||+++++.+.+.
T Consensus 91 ra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~s~ADi~l~~~~~~~~~~~~ 170 (201)
T PRK10542 91 RYHTIEWLNYIATELHKGFTPLFRPDTPEEYKPTVRAQLEKKFQYVDEALADEQWICGQRFTIADAYLFTVLRWAYAVKL 170 (201)
T ss_pred HHHHHHHHHHHHhhhhhhhhhccCCCChHHHHHHHHHHHHHHHHHHHHHhcCCCeeeCCCCcHHhHHHHHHHHHhhccCC
Confidence 11111 00 1 11234556778999999999999889999999999999999999887
Q ss_pred -hhhChhHHHHHHHhcchhhHHhhcchh
Q 040899 120 -ETECPKIIAWAKRCTQRKSVSKSLKDE 146 (155)
Q Consensus 120 -~~~~p~l~~~~~~~~~~~~~~~~~~~~ 146 (155)
...+|+|.+|++++.++|+|++++.+.
T Consensus 171 ~~~~~p~l~~w~~~~~~~p~~k~~~~~~ 198 (201)
T PRK10542 171 NLEGLEHIAAYMQRVAERPAVAAALKAE 198 (201)
T ss_pred CcccchHHHHHHHHHHcCHHHHHHHHHc
Confidence 567999999999999999999998763
No 6
>PLN02473 glutathione S-transferase
Probab=99.97 E-value=5.3e-29 Score=177.93 Aligned_cols=144 Identities=24% Similarity=0.331 Sum_probs=120.7
Q ss_pred ChHHhHHHHhCCCceeEecCCC---CCChhhhhcCCCCCccceEEeCCeeeeehHHHHHHHHHhCcc-------------
Q 040899 1 MRVRIALAEKGIEYEYREQNLL---NKGPMLLQMNRVHKKVPVLIHNGKPICESTNIVQYIDEIHTD------------- 64 (155)
Q Consensus 1 ~r~~~~l~~~gi~~~~~~v~~~---~~~~~~~~~~p~~~~vP~l~~~g~~i~es~aI~~yL~~~~~~------------- 64 (155)
+|++++|+++|++|+.+.++.. +.+++++++||+ |+||+|+++|.+++||.+|++||++.+|.
T Consensus 15 ~rv~~~L~e~gi~ye~~~v~~~~~~~~~~~~~~~nP~-g~vP~L~~~g~~l~ES~aI~~YL~~~~~~~~~~l~p~~~~~r 93 (214)
T PLN02473 15 QRVLLCFLEKGIEFEVIHVDLDKLEQKKPEHLLRQPF-GQVPAIEDGDLKLFESRAIARYYATKYADQGTDLLGKTLEHR 93 (214)
T ss_pred HHHHHHHHHcCCCceEEEecCcccccCCHHHHhhCCC-CCCCeEEECCEEEEehHHHHHHHHHHcCCcCCCCCCCCHHHH
Confidence 4899999999999999998875 477899999998 99999999999999999999999988741
Q ss_pred -----hHH-----------------HHh---hc---hHHHHHHHHHHHHHHHHHHHhcCCCCcccCCCcChhhhhHHHHH
Q 040899 65 -----GRE-----------------MRA---VK---LERQEEMTKEFIAILKTLEEELGDKPHFEGENFGFVDVSLIPLY 116 (155)
Q Consensus 65 -----~~~-----------------~~~---~~---~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aD~~~~~~l 116 (155)
|.. .+. .. ....+.....+.+.++.+|+.|++++|++|+++|+||+++++.+
T Consensus 94 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~Gd~~t~ADi~~~~~~ 173 (214)
T PLN02473 94 AIVDQWVEVENNYFYAVALPLVINLVFKPRLGEPCDVALVEELKVKFDKVLDVYENRLATNRYLGGDEFTLADLTHMPGM 173 (214)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHhcccccCCCChHHHHHHHHHHHHHHHHHHHHhccCCcccCCCCCHHHHHHHHHH
Confidence 110 010 00 12344566778889999999998889999999999999999988
Q ss_pred hHH---------hhhChhHHHHHHHhcchhhHHhhcch
Q 040899 117 CWL---------ETECPKIIAWAKRCTQRKSVSKSLKD 145 (155)
Q Consensus 117 ~~~---------~~~~p~l~~~~~~~~~~~~~~~~~~~ 145 (155)
.+. .+++|+|.+|++++.++|++++++..
T Consensus 174 ~~~~~~~~~~~~~~~~P~l~~w~~~~~~~p~~~~~~~~ 211 (214)
T PLN02473 174 RYIMNETSLSGLVTSRENLNRWWNEISARPAWKKLMEL 211 (214)
T ss_pred HHHHhccccHHHHhcCHHHHHHHHHHhcChhhHHHHHH
Confidence 764 46899999999999999999998764
No 7
>PLN02395 glutathione S-transferase
Probab=99.96 E-value=4.7e-29 Score=178.29 Aligned_cols=144 Identities=23% Similarity=0.367 Sum_probs=120.4
Q ss_pred ChHHhHHHHhCCCceeEecCCC---CCChhhhhcCCCCCccceEEeCCeeeeehHHHHHHHHHhCcc-------------
Q 040899 1 MRVRIALAEKGIEYEYREQNLL---NKGPMLLQMNRVHKKVPVLIHNGKPICESTNIVQYIDEIHTD------------- 64 (155)
Q Consensus 1 ~r~~~~l~~~gi~~~~~~v~~~---~~~~~~~~~~p~~~~vP~l~~~g~~i~es~aI~~yL~~~~~~------------- 64 (155)
+|++++|+++|++|+.+.+++. +.+++|+++||. |+||+|+++|.+++||.+|++||++.++.
T Consensus 14 ~rv~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~~nP~-g~vP~L~~~~~~l~ES~aI~~YL~~~~~~~~~~l~p~~~~~~ 92 (215)
T PLN02395 14 KRALVTLIEKGVEFETVPVDLMKGEHKQPEYLALQPF-GVVPVIVDGDYKIFESRAIMRYYAEKYRSQGPDLLGKTIEER 92 (215)
T ss_pred HHHHHHHHHcCCCceEEEeccccCCcCCHHHHhhCCC-CCCCEEEECCEEEEcHHHHHHHHHHHcCCCCcCcCCCChhHH
Confidence 5899999999999999999875 467899999998 99999999999999999999999998641
Q ss_pred -----hHHH-----------------Hh------hchHHHHHHHHHHHHHHHHHHHhcCCCCcccCCCcChhhhhHHHHH
Q 040899 65 -----GREM-----------------RA------VKLERQEEMTKEFIAILKTLEEELGDKPHFEGENFGFVDVSLIPLY 116 (155)
Q Consensus 65 -----~~~~-----------------~~------~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aD~~~~~~l 116 (155)
|..+ +. ..+...+...+.+.+.++.||+.|++++|++|+++|+||+++++.+
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~s~ADi~l~~~~ 172 (215)
T PLN02395 93 GQVEQWLDVEATSYHPPLLNLTLHILFASKMGFPADEKVIKESEEKLAKVLDVYEARLSKSKYLAGDFVSLADLAHLPFT 172 (215)
T ss_pred HHHHHHHHHHHHhcCchHHHHHHHHHhhhhccCCCcHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCcCHHHHHHHHHH
Confidence 1110 00 0112245566778899999999999889999999999999999887
Q ss_pred hHH---------hhhChhHHHHHHHhcchhhHHhhcch
Q 040899 117 CWL---------ETECPKIIAWAKRCTQRKSVSKSLKD 145 (155)
Q Consensus 117 ~~~---------~~~~p~l~~~~~~~~~~~~~~~~~~~ 145 (155)
.++ ...+|+|.+|++++.++|++++++..
T Consensus 173 ~~~~~~~~~~~~~~~~p~L~~w~~~~~~rp~~k~~~~~ 210 (215)
T PLN02395 173 EYLVGPIGKAYLIKDRKHVSAWWDDISSRPAWKEVLAK 210 (215)
T ss_pred HHHhcccchhhhhccCchHHHHHHHHHcChHHHHHHHH
Confidence 654 45799999999999999999998765
No 8
>PRK13972 GSH-dependent disulfide bond oxidoreductase; Provisional
Probab=99.96 E-value=3.4e-29 Score=179.17 Aligned_cols=145 Identities=20% Similarity=0.317 Sum_probs=118.8
Q ss_pred ChHHhHHHHhCCCceeEecCCCC---CChhhhhcCCCCCccceEEe-----CC--eeeeehHHHHHHHHHhCcc------
Q 040899 1 MRVRIALAEKGIEYEYREQNLLN---KGPMLLQMNRVHKKVPVLIH-----NG--KPICESTNIVQYIDEIHTD------ 64 (155)
Q Consensus 1 ~r~~~~l~~~gi~~~~~~v~~~~---~~~~~~~~~p~~~~vP~l~~-----~g--~~i~es~aI~~yL~~~~~~------ 64 (155)
+||+++|+++||+|+.+.+++.. ..++|+++||. |+||+|++ || .+++||.||++||++.++.
T Consensus 13 ~~v~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~iNP~-gkVP~L~~~~~~d~g~~~~L~ES~AI~~YL~~~~~~l~p~~~ 91 (215)
T PRK13972 13 HKITLFLEEAELDYRLIKVDLGKGGQFRPEFLRISPN-NKIPAIVDHSPADGGEPLSLFESGAILLYLAEKTGLFLSHET 91 (215)
T ss_pred HHHHHHHHHcCCCcEEEEecCcccccCCHHHHhhCcC-CCCCEEEeCCCCCCCCceeEEcHHHHHHHHHHhcCCCCCCCH
Confidence 58999999999999999998753 46899999998 99999996 45 4799999999999988753
Q ss_pred --------hHHHHhh-------------------chHHHHHHHHHHHHHHHHHHHhcCCCCcccCCCcChhhhhHHHHHh
Q 040899 65 --------GREMRAV-------------------KLERQEEMTKEFIAILKTLEEELGDKPHFEGENFGFVDVSLIPLYC 117 (155)
Q Consensus 65 --------~~~~~~~-------------------~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aD~~~~~~l~ 117 (155)
|..+... .+...+.....+.+.++.+|++|.+++|++|+++|+||+++++.+.
T Consensus 92 ~~ra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~Gd~~t~ADi~l~~~~~ 171 (215)
T PRK13972 92 RERAATLQWLFWQVGGLGPMLGQNHHFNHAAPQTIPYAIERYQVETQRLYHVLNKRLENSPWLGGENYSIADIACWPWVN 171 (215)
T ss_pred HHHHHHHHHHHHHhhccCcceeeeeeeeccCCCCCchHHHHHHHHHHHHHHHHHHHhccCccccCCCCCHHHHHHHHHHH
Confidence 1111100 0123455566788999999999998899999999999999988775
Q ss_pred HH------hhhChhHHHHHHHhcchhhHHhhcchh
Q 040899 118 WL------ETECPKIIAWAKRCTQRKSVSKSLKDE 146 (155)
Q Consensus 118 ~~------~~~~p~l~~~~~~~~~~~~~~~~~~~~ 146 (155)
.. ...||+|.+|+++|.++|+|++++...
T Consensus 172 ~~~~~~~~~~~~P~l~~w~~r~~~rp~~~~~~~~~ 206 (215)
T PRK13972 172 AWTRQRIDLAMYPAVKNWHERIRSRPATGQALLKA 206 (215)
T ss_pred HHhhcCCcchhCHHHHHHHHHHHhCHHHHHHHHHh
Confidence 43 578999999999999999999987754
No 9
>PLN02817 glutathione dehydrogenase (ascorbate)
Probab=99.96 E-value=7.9e-29 Score=181.87 Aligned_cols=151 Identities=23% Similarity=0.295 Sum_probs=125.6
Q ss_pred ChHHhHHHHhCCCceeEecCCCCCChhhhhcCCCCCccceEEeCCeeeeehHHHHHHHHHhCcc-----------hH---
Q 040899 1 MRVRIALAEKGIEYEYREQNLLNKGPMLLQMNRVHKKVPVLIHNGKPICESTNIVQYIDEIHTD-----------GR--- 66 (155)
Q Consensus 1 ~r~~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~~~g~~i~es~aI~~yL~~~~~~-----------~~--- 66 (155)
+|++++|+++|++|+.+.+++.+.+++|+++||. |+||+|+++|.+++||.+|++||++.+|. ..
T Consensus 77 ~rV~i~L~ekgi~ye~~~vdl~~~~~~fl~iNP~-GkVPvL~~d~~~L~ES~aI~~YL~e~~p~~~L~~~~era~i~~~l 155 (265)
T PLN02817 77 QRVLLTLEEKHLPYDMKLVDLTNKPEWFLKISPE-GKVPVVKLDEKWVADSDVITQALEEKYPDPPLATPPEKASVGSKI 155 (265)
T ss_pred HHHHHHHHHcCCCCEEEEeCcCcCCHHHHhhCCC-CCCCEEEECCEEEecHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH
Confidence 5899999999999999999998888999999998 99999999888999999999999999885 00
Q ss_pred -----HHHhhchHHHHHHHHHHHHHHHHHHHhcCC-CCcccCCCcChhhhhHHHHHhHH------------hhhChhHHH
Q 040899 67 -----EMRAVKLERQEEMTKEFIAILKTLEEELGD-KPHFEGENFGFVDVSLIPLYCWL------------ETECPKIIA 128 (155)
Q Consensus 67 -----~~~~~~~~~~~~~~~~~~~~l~~le~~L~~-~~~l~G~~~t~aD~~~~~~l~~~------------~~~~p~l~~ 128 (155)
..+.. ....+...+.+.+.++.||++|++ ++|++|+++|+||+++++.+.++ ...+|+|.+
T Consensus 156 ~~~~~~~~~~-~~~~~~~~~~l~~~l~~LE~~L~~~g~yl~Gd~~SlADi~l~p~L~~l~~~~~~~~~~~i~~~~P~L~~ 234 (265)
T PLN02817 156 FSTFIGFLKS-KDPGDGTEQALLDELTSFDDYIKENGPFINGEKISAADLSLGPKLYHLEIALGHYKNWSVPDSLPFVKS 234 (265)
T ss_pred HHHHHHHhcc-CCcchHHHHHHHHHHHHHHHHHhcCCCeeCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCccccCHHHHH
Confidence 01111 111122345678889999999964 69999999999999999988655 256899999
Q ss_pred HHHHhcchhhHHhhcchhhHHhhhh
Q 040899 129 WAKRCTQRKSVSKSLKDEKKVLGFV 153 (155)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (155)
|++++.++|+|+.+.+..+.+..-+
T Consensus 235 w~~ri~~rps~~~~~~~~~~~~~~~ 259 (265)
T PLN02817 235 YMKNIFSMESFVKTRALPEDVIAGW 259 (265)
T ss_pred HHHHHhcchhHhhcCCCHHHHHHHh
Confidence 9999999999999999877766544
No 10
>TIGR01262 maiA maleylacetoacetate isomerase. Maleylacetoacetate isomerase is an enzyme of tyrosine and phenylalanine catabolism. It requires glutathione and belongs by homology to the zeta family of glutathione S-transferases. The enzyme (EC 5.2.1.2) is described as active also on maleylpyruvate, and the example from a Ralstonia sp. catabolic plasmid is described as a maleylpyruvate isomerase involved in gentisate catabolism.
Probab=99.96 E-value=3.5e-28 Score=173.15 Aligned_cols=145 Identities=28% Similarity=0.346 Sum_probs=120.0
Q ss_pred ChHHhHHHHhCCCceeEecCCC----CCChhhhhcCCCCCccceEEeCCeeeeehHHHHHHHHHhCcc------------
Q 040899 1 MRVRIALAEKGIEYEYREQNLL----NKGPMLLQMNRVHKKVPVLIHNGKPICESTNIVQYIDEIHTD------------ 64 (155)
Q Consensus 1 ~r~~~~l~~~gi~~~~~~v~~~----~~~~~~~~~~p~~~~vP~l~~~g~~i~es~aI~~yL~~~~~~------------ 64 (155)
+|+|++|+++||+|+.+.++.. ...+++.++||+ |+||+|+++|.+++||.+|++||++.++.
T Consensus 12 ~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~nP~-g~vP~L~~~g~~l~ES~aI~~yl~~~~~~~~l~p~~~~~~a 90 (210)
T TIGR01262 12 YRVRIALALKGIDYEYVPVNLLRDGEQRSPEFLALNPQ-GLVPTLDIDGEVLTQSLAIIEYLEETYPDPPLLPADPIKRA 90 (210)
T ss_pred HHHHHHHHHCCCCceEEecccccccccCChhhhhcCCC-CcCCEEEECCEEeecHHHHHHHHHHhCCCCCCCCCCHHHHH
Confidence 5899999999999999999862 356789999998 99999999999999999999999998753
Q ss_pred ----hHHHH----------------hh----chH-HHHHHHHHHHHHHHHHHHhcCC--CCcccCCCcChhhhhHHHHHh
Q 040899 65 ----GREMR----------------AV----KLE-RQEEMTKEFIAILKTLEEELGD--KPHFEGENFGFVDVSLIPLYC 117 (155)
Q Consensus 65 ----~~~~~----------------~~----~~~-~~~~~~~~~~~~l~~le~~L~~--~~~l~G~~~t~aD~~~~~~l~ 117 (155)
|.... .. .+. ..+...+.+.+.|+.||++|.+ ++|++|+++|+||+++++.+.
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~T~ADi~~~~~l~ 170 (210)
T TIGR01262 91 RVRALALLIACDIHPLNNLRVLQYLREKLGVEEEARNRWYQHWISKGFAALEALLQPHAGAFCVGDTPTLADLCLVPQVY 170 (210)
T ss_pred HHHHHHHHHhcccChhhhhhHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCEeeCCCCCHHHHHHHHHHH
Confidence 11000 00 111 1233455688999999999975 469999999999999999998
Q ss_pred HH------hhhChhHHHHHHHhcchhhHHhhcchh
Q 040899 118 WL------ETECPKIIAWAKRCTQRKSVSKSLKDE 146 (155)
Q Consensus 118 ~~------~~~~p~l~~~~~~~~~~~~~~~~~~~~ 146 (155)
+. ...||+|.+|+++|.++|+++++.++.
T Consensus 171 ~~~~~~~~~~~~p~l~~~~~~~~~rp~~~~~~~~~ 205 (210)
T TIGR01262 171 NAERFGVDLTPYPTLRRIAAALAALPAFQRAHPEN 205 (210)
T ss_pred HHHHcCCCcccchHHHHHHHHHhcCHHHHHhCccc
Confidence 77 578999999999999999999998865
No 11
>PTZ00057 glutathione s-transferase; Provisional
Probab=99.96 E-value=6.1e-28 Score=171.59 Aligned_cols=144 Identities=19% Similarity=0.241 Sum_probs=115.4
Q ss_pred ChHHhHHHHhCCCceeEecCCCCCChhhh--------hcCCCCCccceEEeCCeeeeehHHHHHHHHHhCcc--------
Q 040899 1 MRVRIALAEKGIEYEYREQNLLNKGPMLL--------QMNRVHKKVPVLIHNGKPICESTNIVQYIDEIHTD-------- 64 (155)
Q Consensus 1 ~r~~~~l~~~gi~~~~~~v~~~~~~~~~~--------~~~p~~~~vP~l~~~g~~i~es~aI~~yL~~~~~~-------- 64 (155)
+++|++|+++|++|+.+.++. .. +++. +.||+ |+||+|++||.+++||.||++||++.+|.
T Consensus 17 ~~vrl~L~~~gi~ye~~~~~~-~~-~~~~~~~~~~~~~~nP~-g~vP~L~~~~~~l~eS~AI~~YLa~~~~~~~~~~~~~ 93 (205)
T PTZ00057 17 ELIRLIFAYLGIEYTDKRFGE-NG-DAFIEFKNFKKEKDTPF-EQVPILEMDNIIFAQSQAIVRYLSKKYKICGESELNE 93 (205)
T ss_pred HHHHHHHHHcCCCeEEEeccc-cc-hHHHHHHhccccCCCCC-CCCCEEEECCEEEecHHHHHHHHHHHcCCCCCCHHHH
Confidence 479999999999999997753 22 2332 47998 99999999999999999999999999864
Q ss_pred ------hHH---HHh---h----chHHHHHHHHHHHHHHHHHHHhcCC--CCcccCCCcChhhhhHHHHHhHH-------
Q 040899 65 ------GRE---MRA---V----KLERQEEMTKEFIAILKTLEEELGD--KPHFEGENFGFVDVSLIPLYCWL------- 119 (155)
Q Consensus 65 ------~~~---~~~---~----~~~~~~~~~~~~~~~l~~le~~L~~--~~~l~G~~~t~aD~~~~~~l~~~------- 119 (155)
+.. ... . .+...+...+.+++.+..||+.|++ ++|++|+++|+||+++++.+.++
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~Gd~~T~AD~~l~~~~~~~~~~~~~~ 173 (205)
T PTZ00057 94 FYADMIFCGVQDIHYKFNNTNLFKQNETTFLNEELPKWSGYFENILKKNHCNYFVGDNLTYADLAVFNLYDDIETKYPNS 173 (205)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeeeCCcccHHHHHHHHHHHHHHHhChhh
Confidence 000 000 0 1122234557789999999999964 38999999999999999998764
Q ss_pred hhhChhHHHHHHHhcchhhHHhhcchhh
Q 040899 120 ETECPKIIAWAKRCTQRKSVSKSLKDEK 147 (155)
Q Consensus 120 ~~~~p~l~~~~~~~~~~~~~~~~~~~~~ 147 (155)
...||+|.+|++++.++|++++++.++.
T Consensus 174 l~~~P~l~~~~~r~~~~P~~k~y~~~~~ 201 (205)
T PTZ00057 174 LKNFPLLKAHNEFISNLPNIKNYISNRK 201 (205)
T ss_pred hccChhHHHHHHHHHhChHHHHHHHhCC
Confidence 5789999999999999999999998764
No 12
>KOG0868 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=5.6e-28 Score=162.60 Aligned_cols=146 Identities=28% Similarity=0.357 Sum_probs=124.2
Q ss_pred ChHHhHHHHhCCCceeEecCCC----CCChhhhhcCCCCCccceEEeCCeeeeehHHHHHHHHHhCcc------------
Q 040899 1 MRVRIALAEKGIEYEYREQNLL----NKGPMLLQMNRVHKKVPVLIHNGKPICESTNIVQYIDEIHTD------------ 64 (155)
Q Consensus 1 ~r~~~~l~~~gi~~~~~~v~~~----~~~~~~~~~~p~~~~vP~l~~~g~~i~es~aI~~yL~~~~~~------------ 64 (155)
+|||++|+.+||+|+.++|++. +...+|+++||+ ++||+|++||.+++||.||++||++.+|.
T Consensus 18 wRVRiALaLK~iDYey~PvnLlk~~~q~~~ef~~iNPm-~kVP~L~i~g~tl~eS~AII~YLeEt~P~ppLLP~d~~KRA 96 (217)
T KOG0868|consen 18 WRVRIALALKGIDYEYKPVNLLKEEDQSDSEFKEINPM-EKVPTLVIDGLTLTESLAIIEYLEETYPDPPLLPKDPHKRA 96 (217)
T ss_pred HHHHHHHHHcCCCcceeehhhhcchhhhhhHHhhcCch-hhCCeEEECCEEeehHHHHHHHHHhcCCCCCCCCcCHHHHH
Confidence 5999999999999999999986 355689999999 99999999999999999999999999987
Q ss_pred --------------------hHHHHhhc--hHHHHHHHHHHHHHHHHHHHhcC--CCCcccCCCcChhhhhHHHHHhHH-
Q 040899 65 --------------------GREMRAVK--LERQEEMTKEFIAILKTLEEELG--DKPHFEGENFGFVDVSLIPLYCWL- 119 (155)
Q Consensus 65 --------------------~~~~~~~~--~~~~~~~~~~~~~~l~~le~~L~--~~~~l~G~~~t~aD~~~~~~l~~~- 119 (155)
........ .........-+.+.|.+||+.|. .+.|-+||++|+||+++.+.++..
T Consensus 97 ~~r~i~~~i~sgIQPlQNl~vl~~l~ek~~~~~~~W~q~~ItkGF~ALEklL~~~aGkycvGDevtiADl~L~pqv~nA~ 176 (217)
T KOG0868|consen 97 KARAISLLIASGIQPLQNLSVLKMLNEKEPGYGDQWAQHFITKGFTALEKLLKSHAGKYCVGDEVTIADLCLPPQVYNAN 176 (217)
T ss_pred HHHHHHHHHHhCCCcchhhHHHHHhcccccchhhHHHHHHHHHhHHHHHHHHHHccCCcccCceeehhhhccchhhhhhh
Confidence 00011111 11245556668899999999994 478999999999999999999987
Q ss_pred -----hhhChhHHHHHHHhcchhhHHhhcchhh
Q 040899 120 -----ETECPKIIAWAKRCTQRKSVSKSLKDEK 147 (155)
Q Consensus 120 -----~~~~p~l~~~~~~~~~~~~~~~~~~~~~ 147 (155)
++.||-+.+-.+.+...|+|+.+.++..
T Consensus 177 rf~vdl~PYPti~ri~e~l~elpaFq~ahP~nQ 209 (217)
T KOG0868|consen 177 RFHVDLTPYPTITRINEELAELPAFQAAHPDNQ 209 (217)
T ss_pred hccccCCcCchHHHHHHHHHhCHHHHhcCCCCC
Confidence 8999999999999999999999988753
No 13
>PRK10357 putative glutathione S-transferase; Provisional
Probab=99.95 E-value=2e-27 Score=168.46 Aligned_cols=143 Identities=20% Similarity=0.304 Sum_probs=118.4
Q ss_pred ChHHhHHHHhCCCceeEecCCCCCChhhhhcCCCCCccceEE-eCCeeeeehHHHHHHHHHhCcc---------------
Q 040899 1 MRVRIALAEKGIEYEYREQNLLNKGPMLLQMNRVHKKVPVLI-HNGKPICESTNIVQYIDEIHTD--------------- 64 (155)
Q Consensus 1 ~r~~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~-~~g~~i~es~aI~~yL~~~~~~--------------- 64 (155)
+||+++|+++|++|+.+.++....++++.++||. |+||+|+ ++|.+++||.+|++||++.++.
T Consensus 13 ~~v~~~L~~~gv~ye~~~~~~~~~~~~~~~~nP~-g~vP~L~~~~g~~l~eS~aI~~yL~~~~~~~~l~p~~~~~~a~~~ 91 (202)
T PRK10357 13 RKISILLLEKGITFEFVNELPYNADNGVAQYNPL-GKVPALVTEEGECWFDSPIIAEYIELLNVAPAMLPRDPLAALRVR 91 (202)
T ss_pred HHHHHHHHHcCCCCeEEecCCCCCchhhhhcCCc-cCCCeEEeCCCCeeecHHHHHHHHHHhCCCCCCCCCCHHHHHHHH
Confidence 5899999999999999999887777788899998 9999998 5889999999999999988753
Q ss_pred -hHHHH-----------h-----h---chHHHHHHHHHHHHHHHHHHHhcCCCCcccCCCcChhhhhHHHHHhHH-----
Q 040899 65 -GREMR-----------A-----V---KLERQEEMTKEFIAILKTLEEELGDKPHFEGENFGFVDVSLIPLYCWL----- 119 (155)
Q Consensus 65 -~~~~~-----------~-----~---~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aD~~~~~~l~~~----- 119 (155)
+..+. . . .+...+...+.+.+.|+.+|+.|++++ ++|+++|+||+++++.+.++
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~le~~L~~~~-l~Gd~~t~ADi~l~~~l~~~~~~~~ 170 (202)
T PRK10357 92 QLEALADGIMDAALVSVREQARPAAQQSEDELLRQREKINRSLDALEGYLVDGT-LKTDTVNLATIAIACAVGYLNFRRV 170 (202)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHHHHHHHHHhhccCc-ccCCCcCHHHHHHHHHHHHHHhccc
Confidence 10000 0 0 012234566778999999999998778 99999999999999998865
Q ss_pred ----hhhChhHHHHHHHhcchhhHHhhcch
Q 040899 120 ----ETECPKIIAWAKRCTQRKSVSKSLKD 145 (155)
Q Consensus 120 ----~~~~p~l~~~~~~~~~~~~~~~~~~~ 145 (155)
...+|++.+|++++.++|+|+++.+.
T Consensus 171 ~~~~~~~~p~l~~~~~~i~~rp~~~~~~~~ 200 (202)
T PRK10357 171 APGWCVDRPHLVKLVENLFQRESFARTEPP 200 (202)
T ss_pred CcchhhcChHHHHHHHHHhcChhhhhcCCC
Confidence 25789999999999999999998764
No 14
>PRK15113 glutathione S-transferase; Provisional
Probab=99.95 E-value=4.4e-27 Score=168.22 Aligned_cols=145 Identities=23% Similarity=0.286 Sum_probs=119.0
Q ss_pred ChHHhHHHHhCCCceeEecCCCC---CChhhhhcCCCCCccceEEeCCeeeeehHHHHHHHHHhCcc-------------
Q 040899 1 MRVRIALAEKGIEYEYREQNLLN---KGPMLLQMNRVHKKVPVLIHNGKPICESTNIVQYIDEIHTD------------- 64 (155)
Q Consensus 1 ~r~~~~l~~~gi~~~~~~v~~~~---~~~~~~~~~p~~~~vP~l~~~g~~i~es~aI~~yL~~~~~~------------- 64 (155)
+|++++|+++||+|+.+.+++.. ..++|+++||+ |+||+|++||.+++||.||++||++.++.
T Consensus 20 ~rv~~~l~e~gi~~e~~~v~~~~~~~~~~~~~~~nP~-g~VP~L~~~~~~l~ES~aI~~YL~~~~~~~~~~~l~p~~~~~ 98 (214)
T PRK15113 20 MSAFVALQEKGLPFELKTVDLDAGEHLQPTYQGYSLT-RRVPTLQHDDFELSESSAIAEYLEERFAPPAWERIYPADLQA 98 (214)
T ss_pred HHHHHHHHHcCCCCeEEEeCCCCccccCHHHHhcCCC-CCCCEEEECCEEEecHHHHHHHHHHHcCCCCccccCCCCHHH
Confidence 48999999999999999998763 56899999998 99999999999999999999999998852
Q ss_pred ------hHHHHh-----------------h--chHHHHHHHHHHHHHHHHHHHhcCC-CCcccCCCcChhhhhHHHHHhH
Q 040899 65 ------GREMRA-----------------V--KLERQEEMTKEFIAILKTLEEELGD-KPHFEGENFGFVDVSLIPLYCW 118 (155)
Q Consensus 65 ------~~~~~~-----------------~--~~~~~~~~~~~~~~~l~~le~~L~~-~~~l~G~~~t~aD~~~~~~l~~ 118 (155)
|..+.. . .+...+...+.+.+.++.+|++|++ ++|++|+ +|+||+++++.+.+
T Consensus 99 ra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~l~G~-~TlADi~l~~~l~~ 177 (214)
T PRK15113 99 RARARQIQAWLRSDLMPLREERPTDVVFAGAKKAPLSEAGKAAAEKLFAVAERLLAPGQPNLFGE-WCIADTDLALMLNR 177 (214)
T ss_pred HHHHHHHHHHHHhhhHHHhccCccchhccCCCCCcccHHHHHHHHHHHHHHHHHHhcCCCEeeCC-ccHHHHHHHHHHHH
Confidence 111110 0 1122355667789999999999974 5799996 99999999999987
Q ss_pred H----hhhChhHHHHHHHhcchhhHHhhcchhh
Q 040899 119 L----ETECPKIIAWAKRCTQRKSVSKSLKDEK 147 (155)
Q Consensus 119 ~----~~~~p~l~~~~~~~~~~~~~~~~~~~~~ 147 (155)
+ ....|+|.+|++++.++|+|+++.++.+
T Consensus 178 ~~~~~~~~~p~l~~~~~r~~~rp~~~~~~~~~~ 210 (214)
T PRK15113 178 LVLHGDEVPERLADYATFQWQRASVQRWLALSA 210 (214)
T ss_pred HHHcCCCCCHHHHHHHHHHhcCHHHHHHHHHhh
Confidence 7 2223999999999999999999998754
No 15
>PRK11752 putative S-transferase; Provisional
Probab=99.95 E-value=7.4e-27 Score=171.79 Aligned_cols=146 Identities=21% Similarity=0.305 Sum_probs=118.1
Q ss_pred ChHHhHHHHh------CCCceeEecCCC---CCChhhhhcCCCCCccceEEeC----CeeeeehHHHHHHHHHhCcc---
Q 040899 1 MRVRIALAEK------GIEYEYREQNLL---NKGPMLLQMNRVHKKVPVLIHN----GKPICESTNIVQYIDEIHTD--- 64 (155)
Q Consensus 1 ~r~~~~l~~~------gi~~~~~~v~~~---~~~~~~~~~~p~~~~vP~l~~~----g~~i~es~aI~~yL~~~~~~--- 64 (155)
+||+++|+++ |++|+.+.+++. +..++|.++||. |+||+|+++ |.+++||.+|++||++.++.
T Consensus 56 ~rV~i~L~e~~~~~~~gl~ye~~~v~~~~~~~~~~e~~~iNP~-GkVP~Lv~~dg~~~~~L~ES~AIl~YL~~~~~~L~P 134 (264)
T PRK11752 56 QKVTIMLEELLALGVKGAEYDAWLIRIGEGDQFSSGFVEINPN-SKIPALLDRSGNPPIRVFESGAILLYLAEKFGAFLP 134 (264)
T ss_pred HHHHHHHHHHHhccCCCCceEEEEecCccccccCHHHHhhCCC-CCCCEEEeCCCCCCeEEEcHHHHHHHHHHhcCCcCC
Confidence 5899999997 999999999875 357899999998 999999973 36899999999999998764
Q ss_pred -----------hHHHHh-----------------hc--hHHHHHHHHHHHHHHHHHHHhcCCCCcccCCCcChhhhhHHH
Q 040899 65 -----------GREMRA-----------------VK--LERQEEMTKEFIAILKTLEEELGDKPHFEGENFGFVDVSLIP 114 (155)
Q Consensus 65 -----------~~~~~~-----------------~~--~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aD~~~~~ 114 (155)
|..+.. .. +...+.....+.+.|+.+|++|++++|++|+++|+||+++++
T Consensus 135 ~~~~era~v~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~le~~L~~~~fl~Gd~~TlADi~l~~ 214 (264)
T PRK11752 135 KDLAARTETLNWLFWQQGSAPFLGGGFGHFYAYAPEKIEYAINRFTMEAKRQLDVLDKQLAEHEYIAGDEYTIADIAIWP 214 (264)
T ss_pred CCHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHhccCCCCCCCccCHHHHHHHH
Confidence 111100 00 112344456788899999999998899999999999999998
Q ss_pred HHhHH-------------hhhChhHHHHHHHhcchhhHHhhcchhh
Q 040899 115 LYCWL-------------ETECPKIIAWAKRCTQRKSVSKSLKDEK 147 (155)
Q Consensus 115 ~l~~~-------------~~~~p~l~~~~~~~~~~~~~~~~~~~~~ 147 (155)
.+.++ ...||++.+|+++|.++|+|++++..+.
T Consensus 215 ~l~~l~~~~~~~~~~~~~~~~~P~L~~w~~rv~~rPs~k~~~~~~~ 260 (264)
T PRK11752 215 WYGNLVLGNLYDAAEFLDVGSYKHVQRWAKEIAERPAVKRGRIVNR 260 (264)
T ss_pred HHHHHhhccccccccccCcccCHHHHHHHHHHHhCHHHHHHHhccc
Confidence 77543 3579999999999999999999887643
No 16
>COG0625 Gst Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=1.1e-26 Score=165.74 Aligned_cols=139 Identities=32% Similarity=0.478 Sum_probs=118.5
Q ss_pred ChHHhHHHHhCCCceeEecCCC--CCChhhhhcCCCCCccceEEeCC-eeeeehHHHHHHHHHhCcc-------------
Q 040899 1 MRVRIALAEKGIEYEYREQNLL--NKGPMLLQMNRVHKKVPVLIHNG-KPICESTNIVQYIDEIHTD------------- 64 (155)
Q Consensus 1 ~r~~~~l~~~gi~~~~~~v~~~--~~~~~~~~~~p~~~~vP~l~~~g-~~i~es~aI~~yL~~~~~~------------- 64 (155)
+|++++|.++|++|+.+.++.. ...++|.++||. |+||+|++++ .+++||.+|++||++.+|.
T Consensus 13 ~kv~l~l~e~g~~ye~~~v~~~~~~~~~~~~~~nP~-gkVPvL~~~~~~~l~ES~AI~~YL~~~~~~~~l~p~~~~~r~~ 91 (211)
T COG0625 13 RKVRLALEEKGLPYEIVLVDLDAEQKPPDFLALNPL-GKVPALVDDDGEVLTESGAILEYLAERYPGPPLLPADPLARRA 91 (211)
T ss_pred HHHHHHHHHcCCCceEEEeCcccccCCHHHHhcCCC-CCCCEEeeCCCCeeecHHHHHHHHHhhCCCCCcCCCCchhHHH
Confidence 4899999999999999999987 588999999998 9999999855 4999999999999999974
Q ss_pred ------hHHHHh------------h--------chHHHHHHHHHHHHHHHHHHHhcCCCCcccCCCcChhhhhHHHHHhH
Q 040899 65 ------GREMRA------------V--------KLERQEEMTKEFIAILKTLEEELGDKPHFEGENFGFVDVSLIPLYCW 118 (155)
Q Consensus 65 ------~~~~~~------------~--------~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aD~~~~~~l~~ 118 (155)
|..+.. . .....+.....+.+.++.+|..|++++|++|+++|+||+++++.+.+
T Consensus 92 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~tiAD~~~~~~~~~ 171 (211)
T COG0625 92 RALLLWWLFFAASDLHPVIGQRRRALLGSEPELLEAALEAARAEIRALLALLEALLADGPYLAGDRFTIADIALAPLLWR 171 (211)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHhccCCcccCCCCCHHHHHHHHHHHH
Confidence 100000 0 12345667778999999999999999999999999999999999998
Q ss_pred H------hhhChhHHHHHHHhcchhhHH
Q 040899 119 L------ETECPKIIAWAKRCTQRKSVS 140 (155)
Q Consensus 119 ~------~~~~p~l~~~~~~~~~~~~~~ 140 (155)
+ ...+|++.+|++++.++|.++
T Consensus 172 ~~~~~~~~~~~p~l~~w~~r~~~rp~~~ 199 (211)
T COG0625 172 LALLGEELADYPALKAWYERVLARPAFR 199 (211)
T ss_pred hhhcCcccccChHHHHHHHHHHcCCchh
Confidence 7 246999999999999999965
No 17
>PRK10387 glutaredoxin 2; Provisional
Probab=99.92 E-value=2.1e-24 Score=153.66 Aligned_cols=137 Identities=23% Similarity=0.296 Sum_probs=108.6
Q ss_pred ChHHhHHHHhCCCceeEecCCCCCChhhhhcCCCCCccceEE-eCCeeeeehHHHHHHHHHhCcc-------------hH
Q 040899 1 MRVRIALAEKGIEYEYREQNLLNKGPMLLQMNRVHKKVPVLI-HNGKPICESTNIVQYIDEIHTD-------------GR 66 (155)
Q Consensus 1 ~r~~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~-~~g~~i~es~aI~~yL~~~~~~-------------~~ 66 (155)
+|++++|+++||+|+.+.++....... .+.||. |+||+|+ +||.+++||.+|++||++.||. |.
T Consensus 13 ~kv~~~L~~~gi~y~~~~~~~~~~~~~-~~~~p~-~~VPvL~~~~g~~l~eS~aI~~yL~~~~~~~~l~~~~~~~~~~~~ 90 (210)
T PRK10387 13 VKARMIFGLKNIPVELIVLANDDEATP-IRMIGQ-KQVPILQKDDGSYMPESLDIVHYIDELDGKPLLTGKRSPAIEEWL 90 (210)
T ss_pred HHHHHHHHHcCCCeEEEEcCCCchhhH-HHhcCC-cccceEEecCCeEecCHHHHHHHHHHhCCCccCCCcccHHHHHHH
Confidence 589999999999999998865432222 568998 9999995 7899999999999999999864 11
Q ss_pred HH------------Hh-h------chH---------------------HHHHHHHHHHHHHHHHHHhcCCCCcccCCCcC
Q 040899 67 EM------------RA-V------KLE---------------------RQEEMTKEFIAILKTLEEELGDKPHFEGENFG 106 (155)
Q Consensus 67 ~~------------~~-~------~~~---------------------~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t 106 (155)
.. +. . .+. ..+...+.+.+.|+.+|+.|++ +|++|+++|
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~-~~l~G~~~s 169 (210)
T PRK10387 91 RKVFGYLNKLLYPRFAKADLPEFATPSARQYFIDKKEASIGDFDALLAHTPGLIKEINADLRALDPLIVK-PNAVNGELS 169 (210)
T ss_pred HHHHHHhhcchhcccccCCCcccCCHHHHHHHHHhHHhccCCHHHHHhcCHHHHHHHHHHHHHHHHHhcC-ccccCCCCC
Confidence 00 00 0 000 0034566788999999999986 999999999
Q ss_pred hhhhhHHHHHhHH-----hhhChhHHHHHHHhcchhhHH
Q 040899 107 FVDVSLIPLYCWL-----ETECPKIIAWAKRCTQRKSVS 140 (155)
Q Consensus 107 ~aD~~~~~~l~~~-----~~~~p~l~~~~~~~~~~~~~~ 140 (155)
+||+++++.+.++ ...+|+|.+|++||.++|.+.
T Consensus 170 ~ADi~l~~~l~~~~~~~~~~~~p~l~~w~~r~~~r~~~~ 208 (210)
T PRK10387 170 TDDIHLFPILRNLTLVKGIEWPPRVADYRDNMSKKTQVP 208 (210)
T ss_pred HHHHHHHHHHhcceeecCCCCCHHHHHHHHHHHHHhCCC
Confidence 9999999999987 345899999999999999763
No 18
>KOG0867 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=9.2e-24 Score=152.09 Aligned_cols=145 Identities=26% Similarity=0.382 Sum_probs=124.8
Q ss_pred ChHHhHHHHhCCCceeEecCCC---CCChhhhhcCCCCCccceEEeCCeeeeehHHHHHHHHHhCcc-------------
Q 040899 1 MRVRIALAEKGIEYEYREQNLL---NKGPMLLQMNRVHKKVPVLIHNGKPICESTNIVQYIDEIHTD------------- 64 (155)
Q Consensus 1 ~r~~~~l~~~gi~~~~~~v~~~---~~~~~~~~~~p~~~~vP~l~~~g~~i~es~aI~~yL~~~~~~------------- 64 (155)
+|+.+++.++|++|+.+.++.. +.+++|+++||. |+||+|+++|..++||.||+.||.+.|..
T Consensus 15 r~vl~~~~~~~l~~e~~~v~~~~ge~~~pefl~~nP~-~kVP~l~d~~~~l~eS~AI~~Yl~~ky~~~~~~l~p~~~~~r 93 (226)
T KOG0867|consen 15 RAVLIAAKELGLEVELKPVDLVKGEQKSPEFLKLNPL-GKVPALEDGGLTLWESHAILRYLAEKYGPLGGILLPKDLKER 93 (226)
T ss_pred HHHHHHHHHcCCceeEEEeeccccccCCHHHHhcCcC-CCCCeEecCCeEEeeHHHHHHHHHHHcCCCCcccCCcCHHHH
Confidence 5789999999999999988765 799999999998 99999999999999999999999997642
Q ss_pred -----hHH--------H-----------Hhh--chHHHHHHHHHHHHHHHHHHHhcCCCCcccCCCcChhhhhHHHHHhH
Q 040899 65 -----GRE--------M-----------RAV--KLERQEEMTKEFIAILKTLEEELGDKPHFEGENFGFVDVSLIPLYCW 118 (155)
Q Consensus 65 -----~~~--------~-----------~~~--~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aD~~~~~~l~~ 118 (155)
++. . +.. .........+.+.+.++.+|++|.++.|+.|+++|+||+.+.+.+..
T Consensus 94 a~v~~~l~~~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~e~~l~~~~yl~g~~~tlADl~~~~~~~~ 173 (226)
T KOG0867|consen 94 AIVDQWLEFENGVLDPVTFERPILAPLLVGLPLNPTAVKELEAKLRKALDNLERFLKTQVYLAGDQLTLADLSLASTLSQ 173 (226)
T ss_pred HHHHHHHHhhhcccccccccceeeecceecccCcchhhHHHHHHHHHHHHHHHHHHccCCcccCCcccHHHHHHhhHHHH
Confidence 110 0 000 24456888899999999999999999999999999999999998887
Q ss_pred H---------hhhChhHHHHHHHhcchhhHHhhcchh
Q 040899 119 L---------ETECPKIIAWAKRCTQRKSVSKSLKDE 146 (155)
Q Consensus 119 ~---------~~~~p~l~~~~~~~~~~~~~~~~~~~~ 146 (155)
+ ..++|++.+|++++.++|.+++..+..
T Consensus 174 ~~~~~~~~~~~~~~p~v~~W~~~~~~~P~~~e~~~~~ 210 (226)
T KOG0867|consen 174 FQGKFATEKDFEKYPKVARWYERIQKRPAYEEANEKG 210 (226)
T ss_pred HhHhhhhhhhhhhChHHHHHHHHHHhCccHHHHHHHH
Confidence 5 578999999999999999998877643
No 19
>KOG4420 consensus Uncharacterized conserved protein (Ganglioside-induced differentiation associated protein 1, GDAP1) [Function unknown]
Probab=99.91 E-value=1.1e-23 Score=149.54 Aligned_cols=149 Identities=29% Similarity=0.435 Sum_probs=123.4
Q ss_pred ChHHhHHHHhCCCceeEecCCC---CCChhhhhcCCCCCccceEEeCCeeeeehHHHHHHHHHhCcc-------------
Q 040899 1 MRVRIALAEKGIEYEYREQNLL---NKGPMLLQMNRVHKKVPVLIHNGKPICESTNIVQYIDEIHTD------------- 64 (155)
Q Consensus 1 ~r~~~~l~~~gi~~~~~~v~~~---~~~~~~~~~~p~~~~vP~l~~~g~~i~es~aI~~yL~~~~~~------------- 64 (155)
||||++++++||+|+...|++. +.++||...||. |.||+|+++..+|.|+.-|++|++++|-+
T Consensus 39 QkVrlvi~EK~id~~~y~V~l~~geh~epwFmrlNp~-gevPVl~~g~~II~d~tqIIdYvErtf~ger~l~pe~~S~~~ 117 (325)
T KOG4420|consen 39 QKVRLVIAEKGIDCEEYDVSLPQGEHKEPWFMRLNPG-GEVPVLIHGDNIISDYTQIIDYVERTFTGERVLMPEVGSLQH 117 (325)
T ss_pred ceeeeehhhcccccceeeccCccccccCchheecCCC-CCCceEecCCeecccHHHHHHHHHHhhccccccccccccccc
Confidence 7999999999999999999876 689999999997 99999999999999999999999997654
Q ss_pred ------------------------------------hH--------------HH-----------Hh-------------
Q 040899 65 ------------------------------------GR--------------EM-----------RA------------- 70 (155)
Q Consensus 65 ------------------------------------~~--------------~~-----------~~------------- 70 (155)
+. .. +.
T Consensus 118 d~~l~~e~~l~~lpm~~~t~g~~lh~eL~~~s~iP~~~~iR~~~~k~~~~v~~l~~~e~pdla~ay~akqkkl~~kl~~h 197 (325)
T KOG4420|consen 118 DRVLQYEELLDALPMDAYTHGCILHPELTTDSMIPKYAEIRRHLAKATTDVMKLDHEEEPDLAEAYLAKQKKLMAKLLEH 197 (325)
T ss_pred HHHHHHHHHHHhcCcchhhccccccchhhccccCcccHHHHHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHHHHHHhc
Confidence 00 00 00
Q ss_pred hchHHHHHHHHHHHHHHHHHHHhcCC----CCcccCCCcChhhhhHHHHHhHH-----------hhhChhHHHHHHHhcc
Q 040899 71 VKLERQEEMTKEFIAILKTLEEELGD----KPHFEGENFGFVDVSLIPLYCWL-----------ETECPKIIAWAKRCTQ 135 (155)
Q Consensus 71 ~~~~~~~~~~~~~~~~l~~le~~L~~----~~~l~G~~~t~aD~~~~~~l~~~-----------~~~~p~l~~~~~~~~~ 135 (155)
..........+.+...|+.+|..|.. ..||+|+.+|+||+++.+.|+++ ....|+|.+|+.++..
T Consensus 198 dd~s~lkkild~l~~~Ld~VEteLe~r~~~~~wL~G~efslADVsLg~~LhRL~~Lg~e~~yw~~gsrpnle~Yf~rvrr 277 (325)
T KOG4420|consen 198 DDVSYLKKILDELAMVLDQVETELEKRKLCELWLCGCEFSLADVSLGATLHRLKFLGLEKKYWEDGSRPNLESYFERVRR 277 (325)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhhccccceeeccccchHHHHHHHHHHHHHHHcccHHHhcccCCCccHHHHHHHHHh
Confidence 01223445556677777788888855 58999999999999999999998 5589999999999999
Q ss_pred hhhHHhhcchhhHHh
Q 040899 136 RKSVSKSLKDEKKVL 150 (155)
Q Consensus 136 ~~~~~~~~~~~~~~~ 150 (155)
|++|++++++.-.+.
T Consensus 278 R~sf~kvlg~~fnil 292 (325)
T KOG4420|consen 278 RFSFRKVLGDIFNIL 292 (325)
T ss_pred hhHHHHhhhhHHHHH
Confidence 999999998765443
No 20
>TIGR02182 GRXB Glutaredoxin, GrxB family. This model includes the highly abundant E. coli GrxB (Grx2) glutaredoxin which is notably longer than either GrxA or GrxC. Unlike the other two E. coli glutaredoxins, GrxB appears to be unable to reduce ribonucleotide reductase, and may have more to do with resistance to redox stress.
Probab=99.90 E-value=5.4e-23 Score=146.64 Aligned_cols=137 Identities=22% Similarity=0.322 Sum_probs=107.2
Q ss_pred ChHHhHHHHhCCCceeEecCCCCCChhhhhcCCCCCccceEE-eCCeeeeehHHHHHHHHHhCcc-------------hH
Q 040899 1 MRVRIALAEKGIEYEYREQNLLNKGPMLLQMNRVHKKVPVLI-HNGKPICESTNIVQYIDEIHTD-------------GR 66 (155)
Q Consensus 1 ~r~~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~-~~g~~i~es~aI~~yL~~~~~~-------------~~ 66 (155)
+|+|++|.++|++|+.+.+..... ....+.||. |+||+|+ +||.+++||.+|++||++.+|. |.
T Consensus 12 ~kvr~~L~~~gl~~e~~~~~~~~~-~~~~~~np~-g~vP~l~~~~g~~l~es~~I~~yL~~~~~~~~~~~~~~~~~~~~~ 89 (209)
T TIGR02182 12 VRARMIFGLKNIPVEKHVLLNDDE-ETPIRMIGA-KQVPILQKDDGRAMPESLDIVAYFDKLDGEPLLTGKVSPEIEAWL 89 (209)
T ss_pred HHHHHHHHHcCCCeEEEECCCCcc-hhHHHhcCC-CCcceEEeeCCeEeccHHHHHHHHHHhCCCccCCCCChHHHHHHH
Confidence 589999999999999987754332 234789998 9999998 7899999999999999998863 11
Q ss_pred H----HHh--------h-----------------chHH-----------HHHHHHHHHHHHHHHHHhcCCCCcccCCCcC
Q 040899 67 E----MRA--------V-----------------KLER-----------QEEMTKEFIAILKTLEEELGDKPHFEGENFG 106 (155)
Q Consensus 67 ~----~~~--------~-----------------~~~~-----------~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t 106 (155)
. .+. . ..+. .+.....+.+.|+.+|++|++++|+.| ++|
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~g-~~T 168 (209)
T TIGR02182 90 RKVTGYANKLLLPRFAKSDLPEFATQSARKYFTDKKEASAGNFSALLNHTPGLLEEINADLEELDKLIDGPNAVNG-ELS 168 (209)
T ss_pred HHHHHHhhhhhccccccCCCcccCCHHHHHHHHHHHHHhcCCHHHHHccCHHHHHHHHHHHHHHHHHHhCccccCC-CCC
Confidence 0 000 0 0000 034567789999999999999999965 699
Q ss_pred hhhhhHHHHHhHH----hhhCh-hHHHHHHHhcchhhHH
Q 040899 107 FVDVSLIPLYCWL----ETECP-KIIAWAKRCTQRKSVS 140 (155)
Q Consensus 107 ~aD~~~~~~l~~~----~~~~p-~l~~~~~~~~~~~~~~ 140 (155)
+||+++++.+.++ ...+| +|.+|++||.+++.+.
T Consensus 169 iADi~l~~~l~~~~~~~~~~~p~~l~~w~~Ri~ar~~~~ 207 (209)
T TIGR02182 169 EDDILVFPLLRNLTLVAGINWPSRVADYLDNMSKKSKVP 207 (209)
T ss_pred HHHHHHHHHhcCeeeecCCCCChHHHHHHHHHHHHhCCC
Confidence 9999999999988 22467 9999999999998753
No 21
>KOG1422 consensus Intracellular Cl- channel CLIC, contains GST domain [Inorganic ion transport and metabolism]
Probab=99.90 E-value=8e-23 Score=141.08 Aligned_cols=153 Identities=18% Similarity=0.299 Sum_probs=134.8
Q ss_pred ChHHhHHHHhCCCceeEecCCCCCChhhhhcCCCCCccceEEeCCeeeeehHHHHHHHHHhCcc----------------
Q 040899 1 MRVRIALAEKGIEYEYREQNLLNKGPMLLQMNRVHKKVPVLIHNGKPICESTNIVQYIDEIHTD---------------- 64 (155)
Q Consensus 1 ~r~~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~~~g~~i~es~aI~~yL~~~~~~---------------- 64 (155)
||+.|.|+.+|++|.+..||+..++++|.++.|. |++|+|..|+..++||..|-++|++.+|.
T Consensus 25 qr~~m~L~~k~~~f~vttVd~~~kp~~f~~~sp~-~~~P~l~~d~~~~tDs~~Ie~~Lee~l~~p~~~~~~~~E~asag~ 103 (221)
T KOG1422|consen 25 QRLFMTLELKGVPFKVTTVDLSRKPEWFLDISPG-GKPPVLKFDEKWVTDSDKIEEFLEEKLPPPKLPTLAPPESASAGS 103 (221)
T ss_pred HHHHHHHHHcCCCceEEEeecCCCcHHHHhhCCC-CCCCeEEeCCceeccHHHHHHHHHHhcCCCCCcccCCHHHHhhHH
Confidence 6899999999999999999999999999999997 99999999999999999999999999876
Q ss_pred -----hHHHHhh-chHHHHHHHHHHHHHHHHHHHhcCC---CCcccCCCcChhhhhHHHHHhHH------------hhhC
Q 040899 65 -----GREMRAV-KLERQEEMTKEFIAILKTLEEELGD---KPHFEGENFGFVDVSLIPLYCWL------------ETEC 123 (155)
Q Consensus 65 -----~~~~~~~-~~~~~~~~~~~~~~~l~~le~~L~~---~~~l~G~~~t~aD~~~~~~l~~~------------~~~~ 123 (155)
+..++.. .+...+...+.+-+.|.+||++|+. ++|+.|+++|.||+.+.|-|+.+ ...+
T Consensus 104 diF~kF~~fi~ksk~~~n~~~e~~Ll~~L~~Ld~yL~sp~~~~Fl~Gd~lt~aDcsLlPKL~~i~va~k~yk~~~IP~~l 183 (221)
T KOG1422|consen 104 DIFAKFSAFIKKSKDAANDGLEKALLKELEKLDDYLKSPSRRKFLDGDKLTLADCSLLPKLHHIKVAAKHYKNFEIPASL 183 (221)
T ss_pred HHHHHHHHHHhCchhhccchHHHHHHHHHHHHHHHhcCccCCccccCCeeeeehhhhchhHHHHHHHHHHhcCCCCchhh
Confidence 1222222 2445566667888889999999974 79999999999999999999987 7889
Q ss_pred hhHHHHHHHhcchhhHHhhcchhhHHhhhhh
Q 040899 124 PKIIAWAKRCTQRKSVSKSLKDEKKVLGFVQ 154 (155)
Q Consensus 124 p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (155)
++|.+|++.+.++.+|..+++...++...|.
T Consensus 184 t~V~rYl~~~ya~d~F~~tcp~d~ei~~~y~ 214 (221)
T KOG1422|consen 184 TGVWRYLKNAYARDEFTNTCPADQEIILAYA 214 (221)
T ss_pred hHHHHHHHHHHhHHHhhcCCchHHHHHHhhh
Confidence 9999999999999999999999888876653
No 22
>KOG1695 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=1.4e-22 Score=142.54 Aligned_cols=144 Identities=19% Similarity=0.261 Sum_probs=116.8
Q ss_pred HHhHHHHhCCCceeEecCCCCCChhhhhcCCCCCccceEEeCCeeeeehHHHHHHHHHhCcc---------hHHH-----
Q 040899 3 VRIALAEKGIEYEYREQNLLNKGPMLLQMNRVHKKVPVLIHNGKPICESTNIVQYIDEIHTD---------GREM----- 68 (155)
Q Consensus 3 ~~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~~~g~~i~es~aI~~yL~~~~~~---------~~~~----- 68 (155)
+|++++..|++|++..++..+.-...+...|+ |++|+|..||..+.+|.||++||++.|+- +...
T Consensus 18 iR~lf~~a~v~fEd~r~~~~~~w~~~K~~~pf-gqlP~l~vDg~~i~QS~AI~RyLArk~gl~Gkt~~E~a~vD~i~d~~ 96 (206)
T KOG1695|consen 18 IRLLFAYAGVSFEDKRITMEDAWEELKDKMPF-GQLPVLEVDGKKLVQSRAILRYLARKFGLAGKTEEEEAWVDMIVDQF 96 (206)
T ss_pred HHHHHHhcCCCcceeeeccccchhhhcccCCC-CCCCEEeECCEeeccHHHHHHHHHHHhCcCCCCHHHHHHHHHHHHhh
Confidence 79999999999999999887633455566898 99999999999999999999999999875 1100
Q ss_pred -----------Hhh-----chHHHH-HHHHHHHHHHHHHHHhcC--CCCcccCCCcChhhhhHHHHHhHH--------hh
Q 040899 69 -----------RAV-----KLERQE-EMTKEFIAILKTLEEELG--DKPHFEGENFGFVDVSLIPLYCWL--------ET 121 (155)
Q Consensus 69 -----------~~~-----~~~~~~-~~~~~~~~~l~~le~~L~--~~~~l~G~~~t~aD~~~~~~l~~~--------~~ 121 (155)
+.. .+...+ .......+.+..+++.|. +++||+||++|.||+.++..+..+ ..
T Consensus 97 ~D~~~~~~~~~~~~~~~g~~~~~~~~~~~Pa~~~~~~~~~~~L~~~~sgflvGd~lT~aDl~i~e~l~~l~~~~~~~~~~ 176 (206)
T KOG1695|consen 97 KDFRWEIFRQPYTAPEAGKSEEELDKLYLPAKPKYFKILEKILKKNKSGFLVGDKLTWADLVIAEHLDTLEELLDPSALD 176 (206)
T ss_pred hhHHHHHHHHhhhhhhhccchhhhhhhhccchHHHHHHHHHHHHhCCCCeeecCcccHHHHHHHHHHHHHHHhcCchhhc
Confidence 000 011111 455567888999999995 568999999999999999999987 45
Q ss_pred hChhHHHHHHHhcchhhHHhhcchhh
Q 040899 122 ECPKIIAWAKRCTQRKSVSKSLKDEK 147 (155)
Q Consensus 122 ~~p~l~~~~~~~~~~~~~~~~~~~~~ 147 (155)
.+|+|.++.+++.++|.++++++++.
T Consensus 177 ~~P~L~a~~~kv~~~p~ik~~i~~r~ 202 (206)
T KOG1695|consen 177 HFPKLKAFKERVSSIPNIKKYLESRP 202 (206)
T ss_pred cChHHHHHHHHHhcCchHHHHHhcCC
Confidence 67999999999999999999998764
No 23
>PLN02907 glutamate-tRNA ligase
Probab=99.79 E-value=1.8e-18 Score=141.29 Aligned_cols=119 Identities=13% Similarity=0.197 Sum_probs=96.1
Q ss_pred hHHhHHHHhCCCceeEecCCCCCChhhhhcCCCCCccceEEe-CCeeeeehHHHHHHHHHhCcc----------------
Q 040899 2 RVRIALAEKGIEYEYREQNLLNKGPMLLQMNRVHKKVPVLIH-NGKPICESTNIVQYIDEIHTD---------------- 64 (155)
Q Consensus 2 r~~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~~-~g~~i~es~aI~~yL~~~~~~---------------- 64 (155)
++.++|++.|++|+... .+|. |+||+|++ +|.+++||.||++||++.++.
T Consensus 15 ~v~~~L~~lgv~~e~~~------------~~p~-GkVPvLv~ddG~~L~ES~AIl~YLa~~~p~~~L~p~d~~erAqV~q 81 (722)
T PLN02907 15 AVIAAAKVAGVPLTIDP------------SLKS-GSAPTLLFSSGEKLTGTNVLLRYIARSASLPGFYGQDAFESSQVDE 81 (722)
T ss_pred HHHHHHHHcCCCcEEee------------cCCC-CCCcEEEECCCCEEECHHHHHHHHHHhCCCcCCCCCCHHHHHHHHH
Confidence 67899999999999864 2577 99999995 889999999999999998764
Q ss_pred hHHHHhhchHHHHHHHHHHHHHHHHHHHhcCCCCcccCCCcChhhhhHHHHHhHH---------hhhChhHHHHHHHhcc
Q 040899 65 GREMRAVKLERQEEMTKEFIAILKTLEEELGDKPHFEGENFGFVDVSLIPLYCWL---------ETECPKIIAWAKRCTQ 135 (155)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aD~~~~~~l~~~---------~~~~p~l~~~~~~~~~ 135 (155)
|..+.... .....+.+.++.||.+|++++||+|+++|+||+++++.+... ...||+|.+|++++.+
T Consensus 82 WL~~~~~~-----~~~~~l~~~L~~LE~~L~~rtYLvGd~lTLADIaL~~~L~~~~~~~~~~~~~~~yPnL~RW~erI~a 156 (722)
T PLN02907 82 WLDYAPTF-----SSGSEFENACEYVDGYLASRTFLVGYSLTIADIAIWSGLAGSGQRWESLRKSKKYQNLVRWFNSISA 156 (722)
T ss_pred HHHHHhhc-----ccHHHHHHHHHHHHHHhccCCeecCCCCCHHHHHHHHHHHhhhhhhhcccccccCHHHHHHHHHHHh
Confidence 11111000 011246678999999999999999999999999999887432 4679999999999999
Q ss_pred hhh
Q 040899 136 RKS 138 (155)
Q Consensus 136 ~~~ 138 (155)
+|+
T Consensus 157 rPs 159 (722)
T PLN02907 157 EYS 159 (722)
T ss_pred CCC
Confidence 999
No 24
>cd03061 GST_N_CLIC GST_N family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division and apoptosis. They can exist in both water-soluble and membrane-bound states, and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and it adopts a fold similar to GSTs, containing an N-terminal domain with a TRX fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. The CLI
Probab=99.73 E-value=1e-17 Score=103.60 Aligned_cols=62 Identities=19% Similarity=0.314 Sum_probs=59.4
Q ss_pred ChHHhHHHHhCCCceeEecCCCCCChhhhhcCCCCCccceEEeCCeeeeehHHHHHHHHHhCc
Q 040899 1 MRVRIALAEKGIEYEYREQNLLNKGPMLLQMNRVHKKVPVLIHNGKPICESTNIVQYIDEIHT 63 (155)
Q Consensus 1 ~r~~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~~~g~~i~es~aI~~yL~~~~~ 63 (155)
||+||+|+++||+|+...+++.+.+++|.++||. |+||+|+++|.+++||.+|++||++.++
T Consensus 26 ~rvrl~L~eKgi~ye~~~vd~~~~p~~~~~~nP~-g~vPvL~~~~~~i~eS~~I~eYLde~~~ 87 (91)
T cd03061 26 QRLFMVLWLKGVVFNVTTVDMKRKPEDLKDLAPG-TQPPFLLYNGEVKTDNNKIEEFLEETLC 87 (91)
T ss_pred HHHHHHHHHCCCceEEEEeCCCCCCHHHHHhCCC-CCCCEEEECCEEecCHHHHHHHHHHHcc
Confidence 6999999999999999999999989999999998 9999999999999999999999999875
No 25
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=99.69 E-value=8.8e-17 Score=96.69 Aligned_cols=63 Identities=38% Similarity=0.644 Sum_probs=59.9
Q ss_pred ChHHhHHHHhCCCceeEecCCCCCChhhhhcCCCCCccceEEeCCeeeeehHHHHHHHHHhCcc
Q 040899 1 MRVRIALAEKGIEYEYREQNLLNKGPMLLQMNRVHKKVPVLIHNGKPICESTNIVQYIDEIHTD 64 (155)
Q Consensus 1 ~r~~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~~~g~~i~es~aI~~yL~~~~~~ 64 (155)
+|+|++|.++||+|+.+.++..+..+++.+.||. |+||+|++||.+++||.+|++||++.+++
T Consensus 11 ~kv~~~l~~~~i~~~~~~v~~~~~~~~~~~~~p~-~~vPvL~~~g~~l~dS~~I~~yL~~~~~~ 73 (75)
T PF13417_consen 11 QKVRLALEEKGIPYELVPVDPEEKRPEFLKLNPK-GKVPVLVDDGEVLTDSAAIIEYLEERYPG 73 (75)
T ss_dssp HHHHHHHHHHTEEEEEEEEBTTSTSHHHHHHSTT-SBSSEEEETTEEEESHHHHHHHHHHHSTS
T ss_pred HHHHHHHHHcCCeEEEeccCcccchhHHHhhccc-ccceEEEECCEEEeCHHHHHHHHHHHcCC
Confidence 5899999999999999999988889999999998 99999999999999999999999999874
No 26
>cd03052 GST_N_GDAP1 GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal TRX-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=99.67 E-value=1.4e-16 Score=95.27 Aligned_cols=58 Identities=36% Similarity=0.730 Sum_probs=53.5
Q ss_pred ChHHhHHHHhCCCceeEecCCC---CCChhhhhcCCCCCccceEEeCCeeeeehHHHHHHHH
Q 040899 1 MRVRIALAEKGIEYEYREQNLL---NKGPMLLQMNRVHKKVPVLIHNGKPICESTNIVQYID 59 (155)
Q Consensus 1 ~r~~~~l~~~gi~~~~~~v~~~---~~~~~~~~~~p~~~~vP~l~~~g~~i~es~aI~~yL~ 59 (155)
+|++++|+++|++|+.+.+++. +..++|.++||. |+||+|++||.+++||.+|++||+
T Consensus 13 ~rv~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~inP~-g~vP~L~~~g~~l~Es~aI~~yLe 73 (73)
T cd03052 13 QKVRLVIAEKGLRCEEYDVSLPLSEHNEPWFMRLNPT-GEVPVLIHGDNIICDPTQIIDYLE 73 (73)
T ss_pred HHHHHHHHHcCCCCEEEEecCCcCccCCHHHHHhCcC-CCCCEEEECCEEEEcHHHHHHHhC
Confidence 5899999999999999999874 467889999998 999999999999999999999985
No 27
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=99.63 E-value=1.2e-15 Score=91.08 Aligned_cols=61 Identities=36% Similarity=0.466 Sum_probs=56.9
Q ss_pred ChHHhHHHHhCCCceeEecCCCCCChhhhhcCCCCCccceEEeCCeeeeehHHHHHHHHHhC
Q 040899 1 MRVRIALAEKGIEYEYREQNLLNKGPMLLQMNRVHKKVPVLIHNGKPICESTNIVQYIDEIH 62 (155)
Q Consensus 1 ~r~~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~~~g~~i~es~aI~~yL~~~~ 62 (155)
+|++++|+++|++|+.+.++..+..+++++.||. |++|+|+++|..++||.+|++||++.+
T Consensus 13 ~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~-~~vP~l~~~~~~l~es~aI~~yL~~~~ 73 (73)
T cd03059 13 HRVRIVLAEKGVSVEIIDVDPDNPPEDLAELNPY-GTVPTLVDRDLVLYESRIIMEYLDERF 73 (73)
T ss_pred HHHHHHHHHcCCccEEEEcCCCCCCHHHHhhCCC-CCCCEEEECCEEEEcHHHHHHHHHhhC
Confidence 4899999999999999999988888899999998 999999999999999999999999864
No 28
>cd03046 GST_N_GTT1_like GST_N family, Saccharomyces cerevisiae GTT1-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT1, and the Schizosaccharomyces pombe GST-III. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT1, a homodimer, exhibits GST activity with standard substrates and associates with the endoplasmic reticulum. Its expression is induced after diauxic shift and remains high throughout the stationary phase. S. pomb
Probab=99.63 E-value=1.4e-15 Score=91.50 Aligned_cols=62 Identities=31% Similarity=0.417 Sum_probs=56.8
Q ss_pred ChHHhHHHHhCCCceeEecCCC---CCChhhhhcCCCCCccceEEeCCeeeeehHHHHHHHHHhCc
Q 040899 1 MRVRIALAEKGIEYEYREQNLL---NKGPMLLQMNRVHKKVPVLIHNGKPICESTNIVQYIDEIHT 63 (155)
Q Consensus 1 ~r~~~~l~~~gi~~~~~~v~~~---~~~~~~~~~~p~~~~vP~l~~~g~~i~es~aI~~yL~~~~~ 63 (155)
+|++++|+++|++|+.+.++.. ...+++.+.||. +++|+|+++|.+++||.+|++||++.+|
T Consensus 12 ~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~-~~vP~l~~~g~~l~es~aI~~yL~~~~~ 76 (76)
T cd03046 12 FRILWLLEELGLPYELVLYDRGPGEQAPPEYLAINPL-GKVPVLVDGDLVLTESAAIILYLAEKYG 76 (76)
T ss_pred HHHHHHHHHcCCCcEEEEeCCCCCccCCHHHHhcCCC-CCCCEEEECCEEEEcHHHHHHHHHHhCc
Confidence 4899999999999999999864 567899999998 9999999999999999999999999875
No 29
>cd03198 GST_C_CLIC GST_C family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin, and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division, and apoptosis. They can exist in both water-soluble and membrane-bound states and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and adopts a fold similar to GSTs, containing an N-terminal domain with a thioredoxin fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. T
Probab=99.63 E-value=4.3e-15 Score=98.33 Aligned_cols=96 Identities=15% Similarity=0.280 Sum_probs=80.0
Q ss_pred HHhCcchHHHHhhc-hHHHHHHHHHHHHHHHHHHHhcCC----------------CCcccCCCcChhhhhHHHHHhHH--
Q 040899 59 DEIHTDGREMRAVK-LERQEEMTKEFIAILKTLEEELGD----------------KPHFEGENFGFVDVSLIPLYCWL-- 119 (155)
Q Consensus 59 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~le~~L~~----------------~~~l~G~~~t~aD~~~~~~l~~~-- 119 (155)
+..|+.+..++.+. ++..+...+.+.+.|+.||.+|++ ++|++|+++|+||+++++.+.++
T Consensus 9 ~~~f~~~~~~~~~~~~~~~e~~~~~l~~~L~~ld~~L~~~~~~~~~~~~~~~~~~~~fL~Gd~fTlADi~l~p~L~~~~~ 88 (134)
T cd03198 9 EDIFAKFSAYIKNSNPALNENLEKGLLKALKKLDDYLNSPLPDEIDSAEDEGVSQRKFLDGDELTLADCNLLPKLHIVKV 88 (134)
T ss_pred HHHHHHHHHHHcCCChhhhHHHHHHHHHHHHHHHHHHccCccccccccccccccCCCCCCCCCCCHHHHHHHHHHHHHHH
Confidence 33455455555443 566777888999999999999976 67999999999999999998744
Q ss_pred ----------hhhChhHHHHHHHhcchhhHHhhcchhhHHhhhhh
Q 040899 120 ----------ETECPKIIAWAKRCTQRKSVSKSLKDEKKVLGFVQ 154 (155)
Q Consensus 120 ----------~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (155)
...+|+|.+|++++.+||+|+++++..++++..++
T Consensus 89 ~~~~~~g~~i~~~~P~L~aw~~ri~aRPsfk~t~~~~~~i~~~~~ 133 (134)
T cd03198 89 VAKKYRNFEIPADLTGLWRYLKNAYQREEFTNTCPADQEIELAYK 133 (134)
T ss_pred HHHhhcCCCccccCHHHHHHHHHHHCCHHHHHHcCCHHHHHHHhc
Confidence 26899999999999999999999999988887764
No 30
>cd03057 GST_N_Beta GST_N family, Class Beta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Unlike mammalian GSTs which detoxify a broad range of compounds, the bacterial class Beta GSTs exhibit limited GSH conjugating activity with a narrow range of substrates. In addition to GSH conjugation, they also bind antibiotics and reduce the antimicrobial activity of beta-lactam drugs. The structure of the Proteus mirabilis enzyme reveals that the cysteine in the active site forms a covalent bond with GSH.
Probab=99.62 E-value=1.4e-15 Score=91.82 Aligned_cols=62 Identities=34% Similarity=0.593 Sum_probs=56.1
Q ss_pred ChHHhHHHHhCCCceeEecCCCC---CChhhhhcCCCCCccceEEeC-CeeeeehHHHHHHHHHhCc
Q 040899 1 MRVRIALAEKGIEYEYREQNLLN---KGPMLLQMNRVHKKVPVLIHN-GKPICESTNIVQYIDEIHT 63 (155)
Q Consensus 1 ~r~~~~l~~~gi~~~~~~v~~~~---~~~~~~~~~p~~~~vP~l~~~-g~~i~es~aI~~yL~~~~~ 63 (155)
+|+|++|+++|++|+.+.++... ..+++.++||. |++|+|+++ |.+++||.+|++||++.+|
T Consensus 12 ~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~np~-~~vP~l~~~~g~~l~eS~aI~~yL~~~~p 77 (77)
T cd03057 12 LAPHIALEELGLPFELVRVDLRTKTQKGADYLAINPK-GQVPALVLDDGEVLTESAAILQYLADLHP 77 (77)
T ss_pred HHHHHHHHHcCCCceEEEEecccCccCCHhHHHhCCC-CCCCEEEECCCcEEEcHHHHHHHHHHhCc
Confidence 47999999999999999998753 57899999998 999999975 8999999999999999876
No 31
>cd03048 GST_N_Ure2p_like GST_N family, Ure2p-like subfamily; composed of the Saccharomyces cerevisiae Ure2p and related GSTs. Ure2p is a regulator for nitrogen catabolism in yeast. It represses the expression of several gene products involved in the use of poor nitrogen sources when rich sources are available. A transmissible conformational change of Ure2p results in a prion called [Ure3], an inactive, self-propagating and infectious amyloid. Ure2p displays a GST fold containing an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The N-terminal TRX-fold domain is sufficient to induce the [Ure3] phenotype and is also called the prion domain of Ure2p. In addition to its role in nitrogen regulation, Ure2p confers protection to cells against heavy metal ion and oxidant toxicity, and shows glutathione (GSH) peroxidase activity. Characterized GSTs in this subfamily include Aspergillus fumigatus GSTs 1 and 2, and
Probab=99.62 E-value=1.6e-15 Score=92.47 Aligned_cols=63 Identities=27% Similarity=0.497 Sum_probs=57.1
Q ss_pred ChHHhHHHHhCCCceeEecCCC---CCChhhhhcCCCCCccceEEeC---CeeeeehHHHHHHHHHhCcc
Q 040899 1 MRVRIALAEKGIEYEYREQNLL---NKGPMLLQMNRVHKKVPVLIHN---GKPICESTNIVQYIDEIHTD 64 (155)
Q Consensus 1 ~r~~~~l~~~gi~~~~~~v~~~---~~~~~~~~~~p~~~~vP~l~~~---g~~i~es~aI~~yL~~~~~~ 64 (155)
+|++++|+++|++|+.+.++.. +..++|.++||. |+||+|+++ |.+++||.+|++||++.+++
T Consensus 13 ~~v~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~p~-~~vP~l~~~~~~g~~l~eS~aI~~yL~~~~~~ 81 (81)
T cd03048 13 FKVSIMLEELGLPYEIHPVDISKGEQKKPEFLKINPN-GRIPAIVDHNGTPLTVFESGAILLYLAEKYDK 81 (81)
T ss_pred HHHHHHHHHcCCCcEEEEecCcCCcccCHHHHHhCcC-CCCCEEEeCCCCceEEEcHHHHHHHHHHHhCC
Confidence 5899999999999999999864 467899999998 999999986 89999999999999998874
No 32
>cd03058 GST_N_Tau GST_N family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropionate herbicides. In addition, Tau GSTs play important roles in intracellular signalling, biosynthesis of anthocyanin,
Probab=99.62 E-value=1.7e-15 Score=90.70 Aligned_cols=62 Identities=66% Similarity=1.021 Sum_probs=56.4
Q ss_pred ChHHhHHHHhCCCceeEecCCCCCChhhhhcCCCCCccceEEeCCeeeeehHHHHHHHHHhC
Q 040899 1 MRVRIALAEKGIEYEYREQNLLNKGPMLLQMNRVHKKVPVLIHNGKPICESTNIVQYIDEIH 62 (155)
Q Consensus 1 ~r~~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~~~g~~i~es~aI~~yL~~~~ 62 (155)
+|+|++|+++|++|+.+.++...+.+++++.||.+|++|+|+++|.+++||.+|++||++.+
T Consensus 13 ~~v~~~l~~~gl~~~~~~~~~~~~~~~~~~~~p~~~~vP~l~~~~~~l~eS~aI~~yL~~~~ 74 (74)
T cd03058 13 LRVRIALALKGVPYEYVEEDLGNKSELLLASNPVHKKIPVLLHNGKPICESLIIVEYIDEAW 74 (74)
T ss_pred HHHHHHHHHcCCCCEEEEeCcccCCHHHHHhCCCCCCCCEEEECCEEeehHHHHHHHHHhhC
Confidence 48999999999999999998887788999999933899999999999999999999999764
No 33
>cd03050 GST_N_Theta GST_N family, Class Theta subfamily; composed of eukaryotic class Theta GSTs and bacterial dichloromethane (DCM) dehalogenase. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Mammalian class Theta GSTs show poor GSH conjugating activity towards the standard substrates, CDNB and ethacrynic acid, differentiating them from other mammalian GSTs. GSTT1-1 shows similar cataytic activity as bacterial DCM dehalogenase, catalyzing the GSH-dependent hydrolytic dehalogenation of dihalomethanes. This is an essential process in methylotrophic bacteria to enable them to use chloromethane and DC
Probab=99.60 E-value=3.1e-15 Score=90.06 Aligned_cols=61 Identities=25% Similarity=0.340 Sum_probs=54.7
Q ss_pred ChHHhHHHHhCCCceeEecCCCC---CChhhhhcCCCCCccceEEeCCeeeeehHHHHHHHHHhC
Q 040899 1 MRVRIALAEKGIEYEYREQNLLN---KGPMLLQMNRVHKKVPVLIHNGKPICESTNIVQYIDEIH 62 (155)
Q Consensus 1 ~r~~~~l~~~gi~~~~~~v~~~~---~~~~~~~~~p~~~~vP~l~~~g~~i~es~aI~~yL~~~~ 62 (155)
+|++++|+++|++|+.+.++..+ ..+++.+.||. |++|+|+++|.+++||.||++||++.+
T Consensus 13 ~~v~~~l~~~g~~~~~~~v~~~~~~~~~~~~~~~~p~-~~vP~L~~~~~~l~eS~aI~~Yl~~~~ 76 (76)
T cd03050 13 RAVYIFLKLNKIPFEECPIDLRKGEQLTPEFKKINPF-GKVPAIVDGDFTLAESVAILRYLARKF 76 (76)
T ss_pred HHHHHHHHHcCCCcEEEEecCCCCCcCCHHHHHhCcC-CCCCEEEECCEEEEcHHHHHHHHHhhC
Confidence 47899999999999999998653 45789999998 999999999999999999999999864
No 34
>cd03184 GST_C_Omega GST_C family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a re
Probab=99.60 E-value=6.4e-15 Score=96.78 Aligned_cols=101 Identities=23% Similarity=0.375 Sum_probs=82.8
Q ss_pred HHHHHHHHhCcchHHHHhhchHHHHHHHHHHHHHHHHHHHhcCC--CCcccCCCcChhhhhHHHHHhHH-----------
Q 040899 53 NIVQYIDEIHTDGREMRAVKLERQEEMTKEFIAILKTLEEELGD--KPHFEGENFGFVDVSLIPLYCWL----------- 119 (155)
Q Consensus 53 aI~~yL~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~--~~~l~G~~~t~aD~~~~~~l~~~----------- 119 (155)
..+.|+.+.++.+...+.. ++..+...+.+.+.++.+|+.|++ ++|++|+++|+||+++++.+.++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~le~~L~~~~~~yl~G~~~t~aDi~~~~~~~~~~~~~~~~~~~~ 86 (124)
T cd03184 8 LLLERFSKVVSAFYKLLGA-PSDREEKKAELRSALENLEEELTKRGTPFFGGDSPGMVDYMIWPWFERLEALKLLLGYEF 86 (124)
T ss_pred HHHHHHhhhhHHHHHHHhc-cccchhhHHHHHHHHHHHHHHHHhcCCCCcCCCCccHHHHHhhHHHHHHHHHHhhccccC
Confidence 3455555555544444433 556678888999999999999975 79999999999999999998765
Q ss_pred -hhhChhHHHHHHHhcchhhHHhhcchhhHHhhhhh
Q 040899 120 -ETECPKIIAWAKRCTQRKSVSKSLKDEKKVLGFVQ 154 (155)
Q Consensus 120 -~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (155)
...+|++.+|+++|.++|+++.++.+.++..++++
T Consensus 87 ~~~~~p~l~~w~~r~~~~p~v~~~~~~~~~~~~~~~ 122 (124)
T cd03184 87 PLDRFPKLKKWMDAMKEDPAVQAFYTDTEIHAEFLK 122 (124)
T ss_pred CcccChHHHHHHHHhccChHHHHHhCCHHHHHHHHh
Confidence 36699999999999999999999999999998876
No 35
>cd03076 GST_N_Pi GST_N family, Class Pi subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Pi GST is a homodimeric eukaryotic protein. The human GSTP1 is mainly found in erythrocytes, kidney, placenta and fetal liver. It is involved in stress responses and in cellular proliferation pathways as an inhibitor of JNK (c-Jun N-terminal kinase). Following oxidative stress, monomeric GSTP1 dissociates from JNK and dimerizes, losing its ability to bind JNK and causing an increase in JNK activity, thereby promoting apoptosis. GSTP1 is expressed in various tumors and is the predominant GST in a w
Probab=99.60 E-value=1.4e-15 Score=90.91 Aligned_cols=59 Identities=17% Similarity=0.254 Sum_probs=54.0
Q ss_pred ChHHhHHHHhCCCceeEecCCCCCChhhhhcCCCCCccceEEeCCeeeeehHHHHHHHHH
Q 040899 1 MRVRIALAEKGIEYEYREQNLLNKGPMLLQMNRVHKKVPVLIHNGKPICESTNIVQYIDE 60 (155)
Q Consensus 1 ~r~~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~~~g~~i~es~aI~~yL~~ 60 (155)
+|+|++|+++|++|+.+.++..+..++++++||. |+||+|+++|.+++||.+|++||++
T Consensus 14 ~~v~~~L~~~~i~~e~~~v~~~~~~~~~~~~~p~-~~vP~l~~~~~~l~es~aI~~yL~~ 72 (73)
T cd03076 14 EAIRLLLADQGISWEEERVTYEEWQESLKPKMLF-GQLPCFKDGDLTLVQSNAILRHLGR 72 (73)
T ss_pred HHHHHHHHHcCCCCEEEEecHHHhhhhhhccCCC-CCCCEEEECCEEEEcHHHHHHHHhc
Confidence 4799999999999999999876566689999998 9999999999999999999999985
No 36
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=99.59 E-value=3.3e-15 Score=89.35 Aligned_cols=59 Identities=32% Similarity=0.509 Sum_probs=53.7
Q ss_pred ChHHhHHHHhCCCceeEecCCC---CCChhhhhcCCCCCccceEEeCCeeeeehHHHHHHHHH
Q 040899 1 MRVRIALAEKGIEYEYREQNLL---NKGPMLLQMNRVHKKVPVLIHNGKPICESTNIVQYIDE 60 (155)
Q Consensus 1 ~r~~~~l~~~gi~~~~~~v~~~---~~~~~~~~~~p~~~~vP~l~~~g~~i~es~aI~~yL~~ 60 (155)
+|++++|+++|++|+.+.+++. +..+++.+.||. |+||+|+++|.+++||.+|++||++
T Consensus 13 ~~v~~~l~~~gi~~e~~~i~~~~~~~~~~~~~~~~p~-~~vP~l~~~~~~l~es~aI~~yL~~ 74 (74)
T cd03045 13 RAVLLTAKALGLELNLKEVNLMKGEHLKPEFLKLNPQ-HTVPTLVDNGFVLWESHAILIYLVE 74 (74)
T ss_pred HHHHHHHHHcCCCCEEEEecCccCCcCCHHHHhhCcC-CCCCEEEECCEEEEcHHHHHHHHhC
Confidence 4799999999999999999865 356899999998 9999999999999999999999974
No 37
>cd03043 GST_N_1 GST_N family, unknown subfamily 1; composed of uncharacterized proteins, predominantly from bacteria, with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.59 E-value=4.2e-15 Score=88.89 Aligned_cols=58 Identities=28% Similarity=0.450 Sum_probs=53.1
Q ss_pred ChHHhHHHHhCCCceeEecCCCC--CChhhhhcCCCCCccceEEeCCeeeeehHHHHHHHH
Q 040899 1 MRVRIALAEKGIEYEYREQNLLN--KGPMLLQMNRVHKKVPVLIHNGKPICESTNIVQYID 59 (155)
Q Consensus 1 ~r~~~~l~~~gi~~~~~~v~~~~--~~~~~~~~~p~~~~vP~l~~~g~~i~es~aI~~yL~ 59 (155)
+|++++|+++|++|+.+.++... ..++|+++||. |++|+|+++|.+++||.+|++||+
T Consensus 14 ~~v~~~L~~~gl~~e~~~v~~~~~~~~~~~~~~nP~-g~vP~L~~~g~~l~eS~aI~~YL~ 73 (73)
T cd03043 14 LRPWLLLKAAGIPFEEILVPLYTPDTRARILEFSPT-GKVPVLVDGGIVVWDSLAICEYLA 73 (73)
T ss_pred HHHHHHHHHcCCCCEEEEeCCCCccccHHHHhhCCC-CcCCEEEECCEEEEcHHHHHHHhC
Confidence 58999999999999999998753 46899999998 999999999999999999999984
No 38
>PF13409 GST_N_2: Glutathione S-transferase, N-terminal domain; PDB: 3C8E_B 3M1G_A 3R3E_A 3O3T_A 1RK4_A 1K0O_B 1K0N_A 3QR6_A 3SWL_A 3TGZ_B ....
Probab=99.59 E-value=4.1e-15 Score=88.20 Aligned_cols=59 Identities=47% Similarity=0.719 Sum_probs=52.1
Q ss_pred ChHHhHHHHhCCCceeEecCC----CCCChhhhhcCCCCCccceEEe-CCeeeeehHHHHHHHHH
Q 040899 1 MRVRIALAEKGIEYEYREQNL----LNKGPMLLQMNRVHKKVPVLIH-NGKPICESTNIVQYIDE 60 (155)
Q Consensus 1 ~r~~~~l~~~gi~~~~~~v~~----~~~~~~~~~~~p~~~~vP~l~~-~g~~i~es~aI~~yL~~ 60 (155)
+|++++|+++|++|+...+.. ....++|.+.||. |+||+|++ +|.++.||.+|++||++
T Consensus 6 ~Rv~i~l~~~gl~~~~~~v~~~~~~~~~~~~~~~~~p~-~~VP~L~~~~g~vi~eS~~I~~yL~~ 69 (70)
T PF13409_consen 6 HRVRIALEEKGLPYEIKVVPLIPKGEQKPPEFLALNPR-GKVPVLVDPDGTVINESLAILEYLEE 69 (70)
T ss_dssp HHHHHHHHHHTGTCEEEEEETTTTBCTTCHBHHHHSTT--SSSEEEETTTEEEESHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCEEEEEeeecCccccChhhhccCcC-eEEEEEEECCCCEeeCHHHHHHHHhc
Confidence 599999999999999988843 2456899999998 99999997 89999999999999986
No 39
>cd03053 GST_N_Phi GST_N family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Phi GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes are highly reactive toward chloroacetanilide and thiocarbamate herbicides. Some Phi GSTs have other functions including t
Probab=99.58 E-value=5e-15 Score=89.07 Aligned_cols=59 Identities=34% Similarity=0.532 Sum_probs=54.1
Q ss_pred ChHHhHHHHhCCCceeEecCCC---CCChhhhhcCCCCCccceEEeCCeeeeehHHHHHHHHH
Q 040899 1 MRVRIALAEKGIEYEYREQNLL---NKGPMLLQMNRVHKKVPVLIHNGKPICESTNIVQYIDE 60 (155)
Q Consensus 1 ~r~~~~l~~~gi~~~~~~v~~~---~~~~~~~~~~p~~~~vP~l~~~g~~i~es~aI~~yL~~ 60 (155)
+|+|++|+++|++|+.+.++.. +.++++.++||. |++|+|+++|.+++||.+|++||++
T Consensus 14 ~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~P~-~~vP~l~~~g~~l~es~aI~~yL~~ 75 (76)
T cd03053 14 RRVLLCLEEKGVDYELVPVDLTKGEHKSPEHLARNPF-GQIPALEDGDLKLFESRAITRYLAE 75 (76)
T ss_pred HHHHHHHHHcCCCcEEEEeCccccccCCHHHHhhCCC-CCCCEEEECCEEEEcHHHHHHHHhh
Confidence 5899999999999999988875 456889999998 9999999999999999999999986
No 40
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=99.58 E-value=4.8e-15 Score=88.11 Aligned_cols=57 Identities=42% Similarity=0.552 Sum_probs=53.2
Q ss_pred ChHHhHHHHhCCCceeEecCCCCCChhhhhcCCCCCccceEEe-CCeeeeehHHHHHHH
Q 040899 1 MRVRIALAEKGIEYEYREQNLLNKGPMLLQMNRVHKKVPVLIH-NGKPICESTNIVQYI 58 (155)
Q Consensus 1 ~r~~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~~-~g~~i~es~aI~~yL 58 (155)
+|++++|+++|++|+.+.++.....++++++||. |+||+|++ ||..++||.+|++|+
T Consensus 13 ~rv~~~L~~~gl~~e~~~v~~~~~~~~~~~~np~-~~vP~L~~~~g~~l~eS~aI~~y~ 70 (71)
T cd03060 13 MRARMALLLAGITVELREVELKNKPAEMLAASPK-GTVPVLVLGNGTVIEESLDIMRWA 70 (71)
T ss_pred HHHHHHHHHcCCCcEEEEeCCCCCCHHHHHHCCC-CCCCEEEECCCcEEecHHHHHHhh
Confidence 5899999999999999999988777899999998 99999997 599999999999996
No 41
>cd03044 GST_N_EF1Bgamma GST_N family, Gamma subunit of Elongation Factor 1B (EFB1gamma) subfamily; EF1Bgamma is part of the eukaryotic translation elongation factor-1 (EF1) complex which plays a central role in the elongation cycle during protein biosynthesis. EF1 consists of two functionally distinct units, EF1A and EF1B. EF1A catalyzes the GTP-dependent binding of aminoacyl-tRNA to the ribosomal A site concomitant with the hydrolysis of GTP. The resulting inactive EF1A:GDP complex is recycled to the active GTP form by the guanine-nucleotide exchange factor EF1B, a complex composed of at least two subunits, alpha and gamma. Metazoan EFB1 contain a third subunit, beta. The EF1B gamma subunit contains a GST fold consisting of an N-terminal TRX-fold domain and a C-terminal alpha helical domain. The GST-like domain of EF1Bgamma is believed to mediate the dimerization of the EF1 complex, which in yeast is a dimer of the heterotrimer EF1A:EF1Balpha:EF1Bgamma. In addition to its role in prot
Probab=99.58 E-value=4.9e-15 Score=89.03 Aligned_cols=59 Identities=25% Similarity=0.348 Sum_probs=54.1
Q ss_pred ChHHhHHHHhCCCceeEecCCC--CCChhhhhcCCCCCccceEEe-CCeeeeehHHHHHHHHH
Q 040899 1 MRVRIALAEKGIEYEYREQNLL--NKGPMLLQMNRVHKKVPVLIH-NGKPICESTNIVQYIDE 60 (155)
Q Consensus 1 ~r~~~~l~~~gi~~~~~~v~~~--~~~~~~~~~~p~~~~vP~l~~-~g~~i~es~aI~~yL~~ 60 (155)
+|++++|+++|++|+.+.++.. +..++|+++||. |++|+|++ +|.+++||.+|++||++
T Consensus 13 ~~~~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~nP~-~~vP~L~~~~g~~l~es~aI~~yL~~ 74 (75)
T cd03044 13 LKILAAAKYNGLDVEIVDFQPGKENKTPEFLKKFPL-GKVPAFEGADGFCLFESNAIAYYVAN 74 (75)
T ss_pred HHHHHHHHHcCCceEEEecccccccCCHHHHHhCCC-CCCCEEEcCCCCEEeeHHHHHHHHhh
Confidence 4899999999999999999876 567899999998 99999996 68999999999999986
No 42
>cd03201 GST_C_DHAR GST_C family, Dehydroascorbate Reductase (DHAR) subfamily; composed of plant-specific DHARs, monomeric enzymes catalyzing the reduction of DHA into ascorbic acid (AsA) using glutathione as the reductant. DHAR allows plants to recycle oxidized AsA before it is lost. AsA serves as a cofactor of violaxanthin de-epoxidase in the xanthophyll cycle and as an antioxidant in the detoxification of reactive oxygen species. Because AsA is the major reductant in plants, DHAR serves to regulate their redox state. It has been suggested that a significant portion of DHAR activity is plastidic, acting to reduce the large amounts of ascorbate oxidized during hydrogen peroxide scavenging by ascorbate peroxidase. DHAR contains a conserved cysteine in its active site and in addition to its reductase activity, shows thiol transferase activity similar to glutaredoxins.
Probab=99.57 E-value=1.9e-14 Score=94.23 Aligned_cols=94 Identities=21% Similarity=0.290 Sum_probs=75.0
Q ss_pred HhCcchHHHHhhchHHHHHHHHHHHHHHHHHHHhcCC-CCcccCCCcChhhhhHHHHHhHH------------hhhChhH
Q 040899 60 EIHTDGREMRAVKLERQEEMTKEFIAILKTLEEELGD-KPHFEGENFGFVDVSLIPLYCWL------------ETECPKI 126 (155)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~-~~~l~G~~~t~aD~~~~~~l~~~------------~~~~p~l 126 (155)
+.++.+..++...++. +...+.+.+.++.||..|++ ++|++|+++|+||+++++.+.++ ...+|+|
T Consensus 13 ~~~~~~~~~~~~~~~~-~~~~~~l~~~l~~Le~~L~~~~~fl~Gd~~TlADi~l~~~l~~l~~~~~~~~~~~~~~~~P~l 91 (121)
T cd03201 13 KIFSTFVGFLKSKDSN-DGTEQALLDELEALEDHLKENGPFINGEKISAVDLSLAPKLYHLEIALGHYKNWSVPESLTSV 91 (121)
T ss_pred HHHHHHHHHHHCCcHH-HHHHHHHHHHHHHHHHHHhcCCCccCCCCCCHHhHHHHHHHHHHHHHHHHhcCCCCcccchHH
Confidence 3344444444443333 55667899999999999974 79999999999999999976555 1689999
Q ss_pred HHHHHHhcchhhHHhhcchhhHHhhhhh
Q 040899 127 IAWAKRCTQRKSVSKSLKDEKKVLGFVQ 154 (155)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (155)
.+|+++|.+||+|+++++..+++...+.
T Consensus 92 ~~w~~rl~~rps~~~t~~~~~~~~~~~~ 119 (121)
T cd03201 92 KSYMKALFSRESFVKTKAEKEDVIAGWA 119 (121)
T ss_pred HHHHHHHHCCchhhhcCCCHHHHHHHhc
Confidence 9999999999999999999888877654
No 43
>cd03047 GST_N_2 GST_N family, unknown subfamily 2; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The sequence from Burkholderia cepacia was identified as part of a gene cluster involved in the degradation of 2,4,5-trichlorophenoxyacetic acid. Some GSTs (e.g. Class Zeta and Delta) are known to catalyze dechlorination reactions.
Probab=99.56 E-value=8.5e-15 Score=87.47 Aligned_cols=58 Identities=31% Similarity=0.400 Sum_probs=52.4
Q ss_pred ChHHhHHHHhCCCceeEecCCC---CCChhhhhcCCCCCccceEEeCCeeeeehHHHHHHHH
Q 040899 1 MRVRIALAEKGIEYEYREQNLL---NKGPMLLQMNRVHKKVPVLIHNGKPICESTNIVQYID 59 (155)
Q Consensus 1 ~r~~~~l~~~gi~~~~~~v~~~---~~~~~~~~~~p~~~~vP~l~~~g~~i~es~aI~~yL~ 59 (155)
+|++++|+++|++|+.+.++.. ...+++.++||+ |+||+|+++|..++||.+|++||+
T Consensus 13 ~~v~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~nP~-~~vP~L~~~~~~l~eS~aI~~YL~ 73 (73)
T cd03047 13 QKVLWLLDELGLPYERIDAGGQFGGLDTPEFLAMNPN-GRVPVLEDGDFVLWESNAILRYLA 73 (73)
T ss_pred HHHHHHHHHcCCCCEEEEeccccccccCHHHHhhCCC-CCCCEEEECCEEEECHHHHHHHhC
Confidence 4899999999999999988753 356889999998 999999999999999999999984
No 44
>cd03190 GST_C_ECM4_like GST_C family, ECM4-like subfamily; composed of predominantly uncharacterized and taxonomically diverse proteins with similarity to the translation product of the Saccharomyces cerevisiae gene ECM4. ECM4, a gene of unknown function, is involved in cell surface biosynthesis and architecture. S. cerevisiae ECM4 mutants show increased amounts of the cell wall hexose, N-acetylglucosamine. More recently, global gene expression analysis shows that ECM4 is upregulated during genotoxic conditions and together with the expression profiles of 18 other genes could potentially differentiate between genotoxic and cytotoxic insults in yeast.
Probab=99.56 E-value=4.6e-14 Score=94.85 Aligned_cols=83 Identities=19% Similarity=0.281 Sum_probs=73.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHhcCCCCcccCCCcChhhhhHHHHHhHH--------------hhhChhHHHHHHHhcchh
Q 040899 72 KLERQEEMTKEFIAILKTLEEELGDKPHFEGENFGFVDVSLIPLYCWL--------------ETECPKIIAWAKRCTQRK 137 (155)
Q Consensus 72 ~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aD~~~~~~l~~~--------------~~~~p~l~~~~~~~~~~~ 137 (155)
.++..+...+.+.+.|+.+|++|++++|++|+++|+||+++++.+.++ ...||+|.+|+++|.++|
T Consensus 31 ~~~~~~~~~~~l~~~l~~LE~~L~~~~yl~Gd~~TlADi~l~~~l~~~~~~~~~~~~~~~~~~~~~P~L~~w~~r~~~~P 110 (142)
T cd03190 31 TQEAYDEAVDELFEALDRLEELLSDRRYLLGDRLTEADIRLFTTLIRFDAVYVQHFKCNLKRIRDYPNLWNYLRRLYQNP 110 (142)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHccCCeeeCCCccHHHHHHHHHHHHHHHHhhhhcccccchhhhCchHHHHHHHHhcCc
Confidence 355677888899999999999999899999999999999999887654 247999999999999999
Q ss_pred hHHhhcchhhHHhhhhh
Q 040899 138 SVSKSLKDEKKVLGFVQ 154 (155)
Q Consensus 138 ~~~~~~~~~~~~~~~~~ 154 (155)
+++++....+.+..|++
T Consensus 111 ~~k~~~~~~~~~~~~~~ 127 (142)
T cd03190 111 GVAETTNFDHIKQHYYG 127 (142)
T ss_pred hHhhhcCHHHHHHHHHh
Confidence 99999998888777765
No 45
>cd03039 GST_N_Sigma_like GST_N family, Class Sigma_like; composed of GSTs belonging to class Sigma and similar proteins, including GSTs from class Mu, Pi and Alpha. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Vertebrate class Sigma GSTs are characterized as GSH-dependent hematopoietic prostaglandin (PG) D synthases and are responsible for the production of PGD2 by catalyzing the isomerization of PGH2. The functions of PGD2 include the maintenance of body temperature, inhibition of platelet aggregation, bronchoconstriction, vasodilation and mediation of allergy and inflammation. Other class Sigma
Probab=99.56 E-value=5.7e-15 Score=87.97 Aligned_cols=59 Identities=27% Similarity=0.402 Sum_probs=52.2
Q ss_pred ChHHhHHHHhCCCceeEecCCCC-CChhhhhcCCCCCccceEEeCCeeeeehHHHHHHHHH
Q 040899 1 MRVRIALAEKGIEYEYREQNLLN-KGPMLLQMNRVHKKVPVLIHNGKPICESTNIVQYIDE 60 (155)
Q Consensus 1 ~r~~~~l~~~gi~~~~~~v~~~~-~~~~~~~~~p~~~~vP~l~~~g~~i~es~aI~~yL~~ 60 (155)
+|+|++|+++|++|+.+.++... ..+++.+.||. |++|+|+++|.+++||.+|++||++
T Consensus 13 ~~v~~~l~~~gi~~e~~~~~~~~~~~~~~~~~~p~-~~vP~L~~~~~~l~es~aI~~yL~~ 72 (72)
T cd03039 13 EPIRLLLADAGVEYEDVRITYEEWPELDLKPTLPF-GQLPVLEIDGKKLTQSNAILRYLAR 72 (72)
T ss_pred HHHHHHHHHCCCCcEEEEeCHHHhhhhhhccCCcC-CCCCEEEECCEEEEecHHHHHHhhC
Confidence 48999999999999999998753 33458899998 9999999999999999999999974
No 46
>cd03185 GST_C_Tau GST_C family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropi
Probab=99.55 E-value=3.7e-14 Score=93.07 Aligned_cols=82 Identities=38% Similarity=0.707 Sum_probs=72.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcCCCCcccCCCcChhhhhHHHHHhHH-------------hhhChhHHHHHHHhcchhhH
Q 040899 73 LERQEEMTKEFIAILKTLEEELGDKPHFEGENFGFVDVSLIPLYCWL-------------ETECPKIIAWAKRCTQRKSV 139 (155)
Q Consensus 73 ~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aD~~~~~~l~~~-------------~~~~p~l~~~~~~~~~~~~~ 139 (155)
+...+...+.+.+.++.+|+.|++++|++|+++|+||+++++.+.++ ...+|++.+|++++.++|++
T Consensus 30 ~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~ADi~l~~~~~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~p~~ 109 (126)
T cd03185 30 GEEREKAKEEALEALKVLEEELGGKPFFGGDTIGYVDIALGSFLGWFRAYEEVGGVKLLDEEKTPLLAAWAERFLELEAV 109 (126)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCcchHHHHHHHHHHHHHHHHHHcCccccCcccCchHHHHHHHHHhccHH
Confidence 44556678889999999999998899999999999999999988775 15689999999999999999
Q ss_pred HhhcchhhHHhhhhh
Q 040899 140 SKSLKDEKKVLGFVQ 154 (155)
Q Consensus 140 ~~~~~~~~~~~~~~~ 154 (155)
+++.+..+..+++++
T Consensus 110 ~~~~~~~~~~~~~~~ 124 (126)
T cd03185 110 KEVLPDRDKLVEFAK 124 (126)
T ss_pred HHhCCCHHHHHHHHH
Confidence 999999988888775
No 47
>PF02798 GST_N: Glutathione S-transferase, N-terminal domain; InterPro: IPR004045 In eukaryotes, glutathione S-transferases (GSTs) participate in the detoxification of reactive electrophillic compounds by catalysing their conjugation to glutathione. The GST domain is also found in S-crystallins from squid, and proteins with no known GST activity, such as eukaryotic elongation factors 1-gamma and the HSP26 family of stress-related proteins, which include auxin-regulated proteins in plants and stringent starvation proteins in Escherichia coli. The major lens polypeptide of Cephalopoda is also a GST [, , , ]. Bacterial GSTs of known function often have a specific, growth-supporting role in biodegradative metabolism: epoxide ring opening and tetrachlorohydroquinone reductive dehalogenation are two examples of the reactions catalysed by these bacterial GSTs. Some regulatory proteins, like the stringent starvation proteins, also belong to the GST family [, ]. GST seems to be absent from Archaea in which gamma-glutamylcysteine substitute to glutathione as major thiol. Soluble GSTs activate glutathione (GSH) to GS-. In many GSTs, this is accomplished by a Tyr at H-bonding distance from the sulphur of GSH. These enzymes catalyse nucleophilic attack by reduced glutathione (GSH) on nonpolar compounds that contain an electrophillic carbon, nitrogen, or sulphur atom []. Glutathione S-transferases form homodimers, but in eukaryotes can also form heterodimers of the A1 and A2 or YC1 and YC2 subunits. The homodimeric enzymes display a conserved structural fold, with each monomer composed of two distinct domains []. The N-terminal domain forms a thioredoxin-like fold that binds the glutathione moiety, while the C-terminal domain contains several hydrophobic alpha-helices that specifically bind hydrophobic substrates. This entry represents the N-terminal domain of GST.; GO: 0005515 protein binding; PDB: 2VCT_H 2WJU_B 4ACS_A 1BYE_D 1AXD_B 2VCV_P 1TDI_A 1JLV_D 1Y6E_A 1U88_B ....
Probab=99.55 E-value=1.9e-14 Score=86.73 Aligned_cols=59 Identities=39% Similarity=0.643 Sum_probs=51.3
Q ss_pred hHHhHHHHhCCCceeEecCCC---CCChhhhhcCCCCCccceEEeC-CeeeeehHHHHHHHHH
Q 040899 2 RVRIALAEKGIEYEYREQNLL---NKGPMLLQMNRVHKKVPVLIHN-GKPICESTNIVQYIDE 60 (155)
Q Consensus 2 r~~~~l~~~gi~~~~~~v~~~---~~~~~~~~~~p~~~~vP~l~~~-g~~i~es~aI~~yL~~ 60 (155)
++|++|+++|++|+.+.++.. +..+++.+.||+.|++|+|+++ |.+++||.||++||++
T Consensus 14 ~~r~~l~~~gv~~e~~~v~~~~~~~~~~e~~~~~p~~g~vP~l~~~~~~~l~es~AI~~YLa~ 76 (76)
T PF02798_consen 14 RIRLLLAEKGVEYEDVRVDFEKGEHKSPEFLAINPMFGKVPALEDGDGFVLTESNAILRYLAR 76 (76)
T ss_dssp HHHHHHHHTT--EEEEEEETTTTGGGSHHHHHHTTTSSSSSEEEETTTEEEESHHHHHHHHHH
T ss_pred HHHHHHHHhcccCceEEEecccccccchhhhhcccccceeeEEEECCCCEEEcHHHHHHHhCC
Confidence 789999999999999999975 3459999999953799999998 9999999999999985
No 48
>cd03075 GST_N_Mu GST_N family, Class Mu subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Mu subfamily is composed of eukaryotic GSTs. In rats, at least six distinct class Mu subunits have been identified, with homologous genes in humans for five of these subunits. Class Mu GSTs can form homodimers and heterodimers, giving a large number of possible isoenzymes that can be formed, all with overlapping activities but different substrate specificities. They are the most abundant GSTs in human liver, skeletal muscle and brain, and are believed to provide protection against diseases inc
Probab=99.54 E-value=2e-14 Score=87.86 Aligned_cols=61 Identities=23% Similarity=0.344 Sum_probs=50.5
Q ss_pred ChHHhHHHHhCCCceeEecCCCCC----Chhhhh-----cCCCCCccceEEeCCeeeeehHHHHHHHHHhC
Q 040899 1 MRVRIALAEKGIEYEYREQNLLNK----GPMLLQ-----MNRVHKKVPVLIHNGKPICESTNIVQYIDEIH 62 (155)
Q Consensus 1 ~r~~~~l~~~gi~~~~~~v~~~~~----~~~~~~-----~~p~~~~vP~l~~~g~~i~es~aI~~yL~~~~ 62 (155)
+++|++|+++|++|+.+.+++... .+++.. .+|+ |+||+|++||.+++||.||++||++.+
T Consensus 13 ~~~~~~l~~~gi~~e~~~v~~~~~~~~~~~~~~~~~~~~~~P~-g~vP~L~~~g~~l~ES~AIl~YLa~~~ 82 (82)
T cd03075 13 QPIRLLLEYTGEKYEEKRYELGDAPDYDRSQWLNEKFKLGLDF-PNLPYYIDGDVKLTQSNAILRYIARKH 82 (82)
T ss_pred HHHHHHHHHcCCCcEEEEeccCCccccchHhhhccchhcCCcC-CCCCEEEECCEEEeehHHHHHHHhhcC
Confidence 479999999999999999987531 234432 2398 999999999999999999999998764
No 49
>cd03038 GST_N_etherase_LigE GST_N family, Beta etherase LigE subfamily; composed of proteins similar to Sphingomonas paucimobilis beta etherase, LigE, a GST-like protein that catalyzes the cleavage of the beta-aryl ether linkages present in low-moleculer weight lignins using GSH as the hydrogen donor. This reaction is an essential step in the degradation of lignin, a complex phenolic polymer that is the most abundant aromatic material in the biosphere. The beta etherase activity of LigE is enantioselective and it complements the activity of the other GST family beta etherase, LigF.
Probab=99.53 E-value=2e-14 Score=88.23 Aligned_cols=61 Identities=28% Similarity=0.433 Sum_probs=53.0
Q ss_pred ChHHhHHHHhCCCceeEecCCCCC---ChhhhhcCCCCCccceEEeC-CeeeeehHHHHHHHHHhCc
Q 040899 1 MRVRIALAEKGIEYEYREQNLLNK---GPMLLQMNRVHKKVPVLIHN-GKPICESTNIVQYIDEIHT 63 (155)
Q Consensus 1 ~r~~~~l~~~gi~~~~~~v~~~~~---~~~~~~~~p~~~~vP~l~~~-g~~i~es~aI~~yL~~~~~ 63 (155)
+|+|++|.++|++|+.+.++.... .+++ +.||. |++|+|+++ |.+++||.+|++||++.+|
T Consensus 20 ~kv~~~L~~~~i~~~~~~~~~~~~~~~~~~~-~~~p~-~~vP~L~~~~~~~l~eS~aI~~yL~~~~p 84 (84)
T cd03038 20 WKTRLALNHKGLEYKTVPVEFPDIPPILGEL-TSGGF-YTVPVIVDGSGEVIGDSFAIAEYLEEAYP 84 (84)
T ss_pred HHHHHHHHhCCCCCeEEEecCCCcccccccc-cCCCC-ceeCeEEECCCCEEeCHHHHHHHHHHhCc
Confidence 489999999999999999986532 2344 78998 999999987 8999999999999999875
No 50
>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.53 E-value=2.6e-14 Score=85.14 Aligned_cols=58 Identities=38% Similarity=0.649 Sum_probs=52.8
Q ss_pred ChHHhHHHHhCCCceeEecCCC---CCChhhhhcCCCCCccceEEeCCeeeeehHHHHHHHH
Q 040899 1 MRVRIALAEKGIEYEYREQNLL---NKGPMLLQMNRVHKKVPVLIHNGKPICESTNIVQYID 59 (155)
Q Consensus 1 ~r~~~~l~~~gi~~~~~~v~~~---~~~~~~~~~~p~~~~vP~l~~~g~~i~es~aI~~yL~ 59 (155)
+|++++|+++|++|+.+.++.. +..+++.+.||. |++|+|+++|.+++||.+|++||+
T Consensus 13 ~~v~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~p~-~~vP~l~~~~~~i~es~aI~~yl~ 73 (73)
T cd03056 13 YKVRLLLALLGIPYEWVEVDILKGETRTPEFLALNPN-GEVPVLELDGRVLAESNAILVYLA 73 (73)
T ss_pred HHHHHHHHHcCCCcEEEEecCCCcccCCHHHHHhCCC-CCCCEEEECCEEEEcHHHHHHHhC
Confidence 4899999999999999999864 467889999998 999999999999999999999984
No 51
>cd03042 GST_N_Zeta GST_N family, Class Zeta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Zeta GSTs, also known as maleylacetoacetate (MAA) isomerases, catalyze the isomerization of MAA to fumarylacetoacetate, the penultimate step in tyrosine/phenylalanine catabolism, using GSH as a cofactor. They show little GSH-conjugating activity towards traditional GST substrates but display modest GSH peroxidase activity. They are also implicated in the detoxification of the carcinogen dichloroacetic acid by catalyzing its dechlorination to glyoxylic acid.
Probab=99.53 E-value=2.7e-14 Score=85.05 Aligned_cols=58 Identities=41% Similarity=0.668 Sum_probs=53.0
Q ss_pred ChHHhHHHHhCCCceeEecCCC---CCChhhhhcCCCCCccceEEeCCeeeeehHHHHHHHH
Q 040899 1 MRVRIALAEKGIEYEYREQNLL---NKGPMLLQMNRVHKKVPVLIHNGKPICESTNIVQYID 59 (155)
Q Consensus 1 ~r~~~~l~~~gi~~~~~~v~~~---~~~~~~~~~~p~~~~vP~l~~~g~~i~es~aI~~yL~ 59 (155)
+|+|++|+++|++|+.+.+++. +..+++.+.||. |++|+|+++|.+++||.+|++||+
T Consensus 13 ~~~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~p~-~~vP~l~~~~~~l~es~aI~~yL~ 73 (73)
T cd03042 13 YRVRIALNLKGLDYEYVPVNLLKGEQLSPAYRALNPQ-GLVPTLVIDGLVLTQSLAIIEYLD 73 (73)
T ss_pred HHHHHHHHHcCCCCeEEEecCccCCcCChHHHHhCCC-CCCCEEEECCEEEEcHHHHHHHhC
Confidence 4899999999999999999874 466899999998 999999999999999999999985
No 52
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.52 E-value=3e-14 Score=86.00 Aligned_cols=61 Identities=25% Similarity=0.262 Sum_probs=53.2
Q ss_pred ChHHhHHHHhCCCceeEecCCCC-CChhhhhcCCCCCccceEEe--CCeeeeehHHHHHHHHHhC
Q 040899 1 MRVRIALAEKGIEYEYREQNLLN-KGPMLLQMNRVHKKVPVLIH--NGKPICESTNIVQYIDEIH 62 (155)
Q Consensus 1 ~r~~~~l~~~gi~~~~~~v~~~~-~~~~~~~~~p~~~~vP~l~~--~g~~i~es~aI~~yL~~~~ 62 (155)
+|++++|.++||+|+.+.++... ..+++.+.||. |+||+|++ +|.+++||.+|++||++.+
T Consensus 14 ~kv~~~L~~~gi~y~~~~v~~~~~~~~~~~~~~p~-~~vP~l~~~~~~~~l~es~~I~~yL~~~~ 77 (77)
T cd03041 14 RLVREVLTELELDVILYPCPKGSPKRDKFLEKGGK-VQVPYLVDPNTGVQMFESADIVKYLFKTY 77 (77)
T ss_pred HHHHHHHHHcCCcEEEEECCCChHHHHHHHHhCCC-CcccEEEeCCCCeEEEcHHHHHHHHHHhC
Confidence 48999999999999999886543 45789999998 99999996 4689999999999999864
No 53
>cd03049 GST_N_3 GST_N family, unknown subfamily 3; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.52 E-value=2.9e-14 Score=85.11 Aligned_cols=58 Identities=31% Similarity=0.485 Sum_probs=53.3
Q ss_pred ChHHhHHHH--hCCCceeEecCCCCCChhhhhcCCCCCccceEEe-CCeeeeehHHHHHHHH
Q 040899 1 MRVRIALAE--KGIEYEYREQNLLNKGPMLLQMNRVHKKVPVLIH-NGKPICESTNIVQYID 59 (155)
Q Consensus 1 ~r~~~~l~~--~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~~-~g~~i~es~aI~~yL~ 59 (155)
+|+|++|.+ +|++|+.+.++..+..+++.+.||. +++|+|++ +|..++||.+|++||+
T Consensus 13 ~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~p~-~~vP~l~~~~g~~l~es~aI~~yLe 73 (73)
T cd03049 13 RKVRVAAHETGLGDDVELVLVNPWSDDESLLAVNPL-GKIPALVLDDGEALFDSRVICEYLD 73 (73)
T ss_pred HHHHHHHHHhCCCCCcEEEEcCcccCChHHHHhCCC-CCCCEEEECCCCEEECHHHHHhhhC
Confidence 489999999 8999999999987778899999998 99999985 8899999999999985
No 54
>KOG4244 consensus Failed axon connections (fax) protein/glutathione S-transferase-like protein [Signal transduction mechanisms]
Probab=99.51 E-value=1.7e-13 Score=98.21 Aligned_cols=127 Identities=20% Similarity=0.286 Sum_probs=101.7
Q ss_pred ChHHhHHHHhCCCceeEecCCCCCChhhhhcCCCCCccceEEeCCeeeeehHHHHHHHHHhCcc----------------
Q 040899 1 MRVRIALAEKGIEYEYREQNLLNKGPMLLQMNRVHKKVPVLIHNGKPICESTNIVQYIDEIHTD---------------- 64 (155)
Q Consensus 1 ~r~~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~~~g~~i~es~aI~~yL~~~~~~---------------- 64 (155)
+|+..+|...+||||.+...+ ...++. |++|.++.+|..+.||.-|..+|.+.++-
T Consensus 65 lKvEt~lR~~~IpYE~~~~~~-------~~rSr~-G~lPFIELNGe~iaDS~~I~~~L~~hf~~~~~L~~e~~a~s~Al~ 136 (281)
T KOG4244|consen 65 LKVETFLRAYDIPYEIVDCSL-------KRRSRN-GTLPFIELNGEHIADSDLIEDRLRKHFKIPDDLSAEQRAQSRALS 136 (281)
T ss_pred HHHHHHHHHhCCCceeccccc-------eeeccC-CCcceEEeCCeeccccHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 478899999999999985553 245665 99999999999999999999999987653
Q ss_pred -------------------------------------------hHHHHhhc----------hHHHHHHHHHHHHHHHHHH
Q 040899 65 -------------------------------------------GREMRAVK----------LERQEEMTKEFIAILKTLE 91 (155)
Q Consensus 65 -------------------------------------------~~~~~~~~----------~~~~~~~~~~~~~~l~~le 91 (155)
|...+... .=..++..+-+.+-|..++
T Consensus 137 rm~dnhL~~~l~y~k~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~f~~kv~~r~~g~IG~f~~~Ei~ell~rDlr~i~ 216 (281)
T KOG4244|consen 137 RMADNHLFWILLYYKGADDAWLNTDRKLIGLPGFLFPLLLPLFWKAIFGKKVYKRSTGAIGDFESAEIDELLHRDLRAIS 216 (281)
T ss_pred HHHHHHHHHHHHHhhhcchHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHHHhhccccCcCHHHHHHHHHHHHHHHH
Confidence 00111110 0113345566788899999
Q ss_pred HhcCCCCcccCCCcChhhhhHHHHHhHH------------hhhChhHHHHHHHhcc
Q 040899 92 EELGDKPHFEGENFGFVDVSLIPLYCWL------------ETECPKIIAWAKRCTQ 135 (155)
Q Consensus 92 ~~L~~~~~l~G~~~t~aD~~~~~~l~~~------------~~~~p~l~~~~~~~~~ 135 (155)
..|++++||+|+++|-+|+.+|+.|..+ ..++|+|.+|++|+.+
T Consensus 217 ~~Lg~KkflfGdkit~~DatvFgqLa~v~YP~~~~i~d~le~d~p~l~eYceRIr~ 272 (281)
T KOG4244|consen 217 DYLGDKKFLFGDKITPADATVFGQLAQVYYPFRSHISDLLEGDFPNLLEYCERIRK 272 (281)
T ss_pred HHhCCCccccCCCCCcceeeehhhhhheeccCCCcHHHHHhhhchHHHHHHHHHHH
Confidence 9999999999999999999999999987 6789999999999976
No 55
>cd03188 GST_C_Beta GST_C family, Class Beta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Unlike mammalian GSTs which detoxify a broad range of compounds, the bacterial class Beta GSTs exhibit limited GSH conjugating activity with a narrow range of substrates. In addition to GSH conjugation, they also bind antibiotics and reduce the antimicrobial activity of beta-lactam drugs. The structure of the Proteus mirabilis enzyme reveals that the cysteine in the active site for
Probab=99.50 E-value=1.3e-13 Score=88.79 Aligned_cols=70 Identities=24% Similarity=0.446 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCcccCCCcChhhhhHHHHHhHH------hhhChhHHHHHHHhcchhhHHhhc
Q 040899 74 ERQEEMTKEFIAILKTLEEELGDKPHFEGENFGFVDVSLIPLYCWL------ETECPKIIAWAKRCTQRKSVSKSL 143 (155)
Q Consensus 74 ~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aD~~~~~~l~~~------~~~~p~l~~~~~~~~~~~~~~~~~ 143 (155)
...+...+.+.+.++.+|+.|++++|++|+++|+||+++++.+.++ ..++|++.+|+++|.++|++++++
T Consensus 39 ~~~~~~~~~~~~~l~~le~~l~~~~~l~G~~~t~aDi~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~p~~k~~~ 114 (114)
T cd03188 39 EVKAAARERLAARLAYLDAQLAGGPYLLGDRFSVADAYLFVVLRWAPGVGLDLSDWPNLAAYLARVAARPAVQAAL 114 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCeeeCCCcchHHHHHHHHHHHHhhcCCChhhChHHHHHHHHHHhCHHhHhhC
Confidence 3456677889999999999999889999999999999999998876 467999999999999999999863
No 56
>cd03209 GST_C_Mu GST_C family, Class Mu subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Mu subfamily is composed of eukaryotic GSTs. In rats, at least six distinct class Mu subunits have been identified, with homologous genes in humans for five of these subunits. Class Mu GSTs can form homodimers and heterodimers, giving a large number of possible isoenzymes that can be formed, all with overlapping activities but different substrate specificities. They are the m
Probab=99.50 E-value=1.2e-13 Score=90.29 Aligned_cols=76 Identities=20% Similarity=0.314 Sum_probs=67.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcCCCCcccCCCcChhhhhHHHHHhHH-------hhhChhHHHHHHHhcchhhHHhhcch
Q 040899 73 LERQEEMTKEFIAILKTLEEELGDKPHFEGENFGFVDVSLIPLYCWL-------ETECPKIIAWAKRCTQRKSVSKSLKD 145 (155)
Q Consensus 73 ~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aD~~~~~~l~~~-------~~~~p~l~~~~~~~~~~~~~~~~~~~ 145 (155)
+...+...+.+.+.++.||+.|++++|++|+++|+||+++++.+.++ ...||+|.+|++++.++|++++++++
T Consensus 30 ~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~T~aDi~l~~~~~~~~~~~~~~~~~~P~l~~~~~rv~~~p~vk~~~~~ 109 (121)
T cd03209 30 EKLKPDYLAKLPDKLKLFSDFLGDRPWFAGDKITYVDFLLYEALDQHRIFEPDCLDAFPNLKDFLERFEALPKISAYMKS 109 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCcCCCCccHHHHHHHHHHHHHHHhCccccccChHHHHHHHHHHHCHHHHHHHhc
Confidence 34456677789999999999998889999999999999999998877 46799999999999999999999988
Q ss_pred hhH
Q 040899 146 EKK 148 (155)
Q Consensus 146 ~~~ 148 (155)
+..
T Consensus 110 ~~~ 112 (121)
T cd03209 110 DRF 112 (121)
T ss_pred ccC
Confidence 754
No 57
>cd03077 GST_N_Alpha GST_N family, Class Alpha subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Alpha subfamily is composed of eukaryotic GSTs which can form homodimer and heterodimers. There are at least six types of class Alpha GST subunits in rats, four of which have human counterparts, resulting in many possible isoenzymes with different activities, tissue distribution and substrate specificities. Human GSTA1-1 and GSTA2-2 show high GSH peroxidase activity. GSTA3-3 catalyzes the isomerization of intermediates in steroid hormone biosynthesis. GSTA4-4 preferentially catalyzes the
Probab=99.49 E-value=9.6e-14 Score=84.22 Aligned_cols=59 Identities=22% Similarity=0.350 Sum_probs=49.5
Q ss_pred ChHHhHHHHhCCCceeEecCCCCCChhhhhcC-----CCCCccceEEeCCeeeeehHHHHHHHHHhCc
Q 040899 1 MRVRIALAEKGIEYEYREQNLLNKGPMLLQMN-----RVHKKVPVLIHNGKPICESTNIVQYIDEIHT 63 (155)
Q Consensus 1 ~r~~~~l~~~gi~~~~~~v~~~~~~~~~~~~~-----p~~~~vP~l~~~g~~i~es~aI~~yL~~~~~ 63 (155)
++++|+|+++|++|+.+.++.. +++.+.+ |+ |+||+|++||.+++||.||++||+++++
T Consensus 14 ~~v~~~l~~~gi~~e~~~v~~~---~~~~~~~~~~~~~~-g~vP~L~~~g~~l~ES~AI~~YL~~~~~ 77 (79)
T cd03077 14 ESIRWLLAAAGVEFEEKFIESA---EDLEKLKKDGSLMF-QQVPMVEIDGMKLVQTRAILNYIAGKYN 77 (79)
T ss_pred HHHHHHHHHcCCCcEEEEeccH---HHHHhhccccCCCC-CCCCEEEECCEEEeeHHHHHHHHHHHcC
Confidence 3789999999999999988752 3333333 57 8999999999999999999999999876
No 58
>PF00043 GST_C: Glutathione S-transferase, C-terminal domain; InterPro: IPR004046 In eukaryotes, glutathione S-transferases (GSTs) participate in the detoxification of reactive electrophillic compounds by catalysing their conjugation to glutathione. The GST domain is also found in S-crystallins from squid, and proteins with no known GST activity, such as eukaryotic elongation factors 1-gamma and the HSP26 family of stress-related proteins, which include auxin-regulated proteins in plants and stringent starvation proteins in Escherichia coli. The major lens polypeptide of cephalopods is also a GST [, , , ]. Bacterial GSTs of known function often have a specific, growth-supporting role in biodegradative metabolism: epoxide ring opening and tetrachlorohydroquinone reductive dehalogenation are two examples of the reactions catalysed by these bacterial GSTs. Some regulatory proteins, like the stringent starvation proteins, also belong to the GST family [, ]. GST seems to be absent from Archaea in which gamma-glutamylcysteine substitute to glutathione as major thiol. Glutathione S-transferases form homodimers, but in eukaryotes can also form heterodimers of the A1 and A2 or YC1 and YC2 subunits. The homodimeric enzymes display a conserved structural fold. Each monomer is composed of a distinct N-terminal sub-domain, which adopts the thioredoxin fold, and a C-terminal all-helical sub-domain. This entry is the C-terminal domain.; PDB: 3UAP_A 3UAR_A 3QAV_A 3QAW_A 1Y6E_A 1U88_B 4AI6_B 1UA5_A 4AKH_A 3QMZ_S ....
Probab=99.49 E-value=1.5e-13 Score=85.90 Aligned_cols=65 Identities=29% Similarity=0.521 Sum_probs=59.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcCCCCcccCCCcChhhhhHHHHHhHH-------h-hhChhHHHHHHHhcchh
Q 040899 73 LERQEEMTKEFIAILKTLEEELGDKPHFEGENFGFVDVSLIPLYCWL-------E-TECPKIIAWAKRCTQRK 137 (155)
Q Consensus 73 ~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aD~~~~~~l~~~-------~-~~~p~l~~~~~~~~~~~ 137 (155)
++..+.....+.+.|+.+|+.|++++|++|+++|+||+++++.+.++ . +++|+|.+|++++.++|
T Consensus 23 ~~~~~~~~~~~~~~l~~le~~l~~~~~l~G~~~t~ADi~~~~~~~~~~~~~~~~~~~~~P~l~~w~~~~~~~P 95 (95)
T PF00043_consen 23 EEMVEEARAKVPRYLEVLEKRLKGGPYLVGDKLTIADIALFPMLDWLERLGPDFLFEKFPKLKKWYERMFARP 95 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTSSSSSBSS-CHHHHHHHHHHHHHHHHTTTTTHTTSHHHHHHHHHHHTSH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCeeeccCCchhHHHHHHHHHHHHHhCCCcccccCHHHHHHHHHHHcCC
Confidence 44677888899999999999999999999999999999999999998 3 89999999999999987
No 59
>cd03207 GST_C_8 GST_C family, unknown subfamily 8; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=99.48 E-value=1.3e-13 Score=87.54 Aligned_cols=71 Identities=24% Similarity=0.288 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCcccCCCcChhhhhHHHHHhHH-----hhhChhHHHHHHHhcchhhHHhhcch
Q 040899 75 RQEEMTKEFIAILKTLEEELGDKPHFEGENFGFVDVSLIPLYCWL-----ETECPKIIAWAKRCTQRKSVSKSLKD 145 (155)
Q Consensus 75 ~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aD~~~~~~l~~~-----~~~~p~l~~~~~~~~~~~~~~~~~~~ 145 (155)
..+...+.+.+.++.+|+.|++++|++|+++|+||+++++.+.+. ...+|++.+|++++.++|+++++.+.
T Consensus 27 ~~~~~~~~~~~~l~~le~~l~~~~~l~g~~~t~aDi~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~p~~~~~~~~ 102 (103)
T cd03207 27 ARMAGFGSYDDVLAALEQALAKGPYLLGERFTAADVLVGSPLGWGLQFGLLPERPAFDAYIARITDRPAFQRAAAI 102 (103)
T ss_pred hhhhhhhhHHHHHHHHHHHHccCCcccCCccCHHHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHcCHHHHHHhcc
Confidence 456667889999999999999899999999999999999999887 56899999999999999999998764
No 60
>KOG3027 consensus Mitochondrial outer membrane protein Metaxin 2, Metaxin 1-binding protein [Cell wall/membrane/envelope biogenesis; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.48 E-value=8.8e-13 Score=91.37 Aligned_cols=126 Identities=16% Similarity=0.238 Sum_probs=105.0
Q ss_pred HHhHHHHhCCCceeEecCCCCCChhhhhcCCCCCccceEEeCCeeeeehHHHHHHHHHhCcc------------------
Q 040899 3 VRIALAEKGIEYEYREQNLLNKGPMLLQMNRVHKKVPVLIHNGKPICESTNIVQYIDEIHTD------------------ 64 (155)
Q Consensus 3 ~~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~~~g~~i~es~aI~~yL~~~~~~------------------ 64 (155)
|..+|..+++||.++..+ +.+| ++|- |+||.|..|..+++|=.+|..+.+.+--.
T Consensus 40 VqtfLrMcnLPf~v~~~~----Naef--mSP~-G~vPllr~g~~~~aef~pIV~fVeak~~~l~s~lsE~qkadmra~vs 112 (257)
T KOG3027|consen 40 VQTFLRMCNLPFNVRQRA----NAEF--MSPG-GKVPLLRIGKTLFAEFEPIVDFVEAKGVTLTSWLSEDQKADMRAYVS 112 (257)
T ss_pred HHHHHHHcCCCceeeecC----Cccc--cCCC-CCCceeeecchhhhhhhHHHHHHHHhccchhhhhhhHHHHHHHHHHH
Confidence 567899999999998766 3454 7896 99999999999999999999999876322
Q ss_pred ---------------------------------------hHHH------------HhhchHHHHHHHHHHHHHHHHHHHh
Q 040899 65 ---------------------------------------GREM------------RAVKLERQEEMTKEFIAILKTLEEE 93 (155)
Q Consensus 65 ---------------------------------------~~~~------------~~~~~~~~~~~~~~~~~~l~~le~~ 93 (155)
+.++ +.-.+...+++.+.+.+.+++|+..
T Consensus 113 lVen~~t~aEl~~s~~de~ty~~vT~~R~gs~ypWPLs~i~~f~Krr~~~r~lk~~~W~~~~~DqVie~vdkc~~aLsa~ 192 (257)
T KOG3027|consen 113 LVENLLTTAELYVSWNDEETYDEVTALRYGSVYPWPLSHILPFVKRRKALRELKVYDWDDKTMDQVIEQVDKCCRALSAQ 192 (257)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHhhhccCCCCCCcHHHHHHHHHHHHHHHHHhhcCcccccHHHHHHHHHHHHHHHHHH
Confidence 0011 1112456788999999999999999
Q ss_pred cCCCCcccCCCcChhhhhHHHHHhHH-------------hhhChhHHHHHHHhcc
Q 040899 94 LGDKPHFEGENFGFVDVSLIPLYCWL-------------ETECPKIIAWAKRCTQ 135 (155)
Q Consensus 94 L~~~~~l~G~~~t~aD~~~~~~l~~~-------------~~~~p~l~~~~~~~~~ 135 (155)
|+.++||.|++||-.|..+|+.+..+ ++.|++|.+++.|+.+
T Consensus 193 L~~q~yf~g~~P~elDAlvFGHlytilTt~Lpn~ela~~lkkys~LlefcrrIeq 247 (257)
T KOG3027|consen 193 LGSQPYFTGDQPTELDALVFGHLYTILTTRLPNMELANILKKYSNLLEFCRRIEQ 247 (257)
T ss_pred hcCCCccCCCCccHHHHHHHhhhHHhhhhcCCcHHHHHHHHHhHHHHHHHHHHHH
Confidence 99999999999999999999999887 7889999999999875
No 61
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=99.48 E-value=8.8e-14 Score=86.27 Aligned_cols=58 Identities=40% Similarity=0.490 Sum_probs=53.3
Q ss_pred ChHHhHHHHhCCCceeEecCCCCCChhhhhcCCCCCccceEEeC-CeeeeehHHHHHHHH
Q 040899 1 MRVRIALAEKGIEYEYREQNLLNKGPMLLQMNRVHKKVPVLIHN-GKPICESTNIVQYID 59 (155)
Q Consensus 1 ~r~~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~~~-g~~i~es~aI~~yL~ 59 (155)
+|++++|+++|++|+.+.++.....+++.+.||. +++|+|+++ |..++||.+|++||+
T Consensus 31 ~kv~~~L~~~gl~~~~~~v~~~~~~~~~~~~np~-~~vPvL~~~~g~~l~eS~aI~~yLe 89 (89)
T cd03055 31 QRARLVLAAKNIPHEVININLKDKPDWFLEKNPQ-GKVPALEIDEGKVVYESLIICEYLD 89 (89)
T ss_pred HHHHHHHHHcCCCCeEEEeCCCCCcHHHHhhCCC-CCcCEEEECCCCEEECHHHHHHhhC
Confidence 5899999999999999999987777789999998 999999975 899999999999985
No 62
>KOG3029 consensus Glutathione S-transferase-related protein [General function prediction only]
Probab=99.47 E-value=1.1e-12 Score=94.86 Aligned_cols=133 Identities=20% Similarity=0.290 Sum_probs=96.6
Q ss_pred ChHHhHHHHhCCCceeEecCCCCCChhhhhcCCCCCccceEEeCCeeeeehHHHHHHHHH--------------hCcc--
Q 040899 1 MRVRIALAEKGIEYEYREQNLLNKGPMLLQMNRVHKKVPVLIHNGKPICESTNIVQYIDE--------------IHTD-- 64 (155)
Q Consensus 1 ~r~~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~~~g~~i~es~aI~~yL~~--------------~~~~-- 64 (155)
.|+|.+|.+.||+|++++|++... .+ .+.+. +.+||+|..+|..+.||.+|+.-|+. .||.
T Consensus 103 cKVrAFLDyhgisY~VVEVnpV~r-~e-Ik~Ss-ykKVPil~~~Geqm~dSsvIIs~laTyLq~~~q~l~eiiq~yPa~~ 179 (370)
T KOG3029|consen 103 CKVRAFLDYHGISYAVVEVNPVLR-QE-IKWSS-YKKVPILLIRGEQMVDSSVIISLLATYLQDKRQDLGEIIQMYPATS 179 (370)
T ss_pred HHHHHHHhhcCCceEEEEecchhh-hh-ccccc-cccccEEEeccceechhHHHHHHHHHHhccCCCCHHHHHHhccccc
Confidence 389999999999999999998643 22 23445 38999999877789999999987733 3442
Q ss_pred --------------------------------------------------------------------------------
Q 040899 65 -------------------------------------------------------------------------------- 64 (155)
Q Consensus 65 -------------------------------------------------------------------------------- 64 (155)
T Consensus 180 ~~ne~GK~v~~~~NKyflM~~e~d~~~~ke~~~eerkWR~WvDn~lVHLiSPNvYrn~~EsletFewf~q~G~w~~~Fpa 259 (370)
T KOG3029|consen 180 FFNEDGKEVNDILNKYFLMYREHDPGVSKETDEEERKWRSWVDNHLVHLISPNVYRNMGESLETFEWFSQAGEWDVHFPA 259 (370)
T ss_pred cccccccchhhcchhheeeeeccCCCccccchHHHhHHHHHHhhhhhhhcCcccccChhhHHHHHHHHHHcCCccccCch
Confidence
Q ss_pred hHH----------HH--hh---chHHHHHHHHHHHHHHHHHHHhc-CCCCcccCCCcChhhhhHHHHHhHH--------h
Q 040899 65 GRE----------MR--AV---KLERQEEMTKEFIAILKTLEEEL-GDKPHFEGENFGFVDVSLIPLYCWL--------E 120 (155)
Q Consensus 65 ~~~----------~~--~~---~~~~~~~~~~~~~~~l~~le~~L-~~~~~l~G~~~t~aD~~~~~~l~~~--------~ 120 (155)
|.+ ++ .. +.-......+.+...++.+-..+ .+++|+.|++|++||+++++++..+ .
T Consensus 260 wEr~lavY~GAtAM~lisK~LKkkhni~D~Re~lydA~d~Wvaalgknr~flGG~kPnLaDLsvfGvl~sm~gc~afkd~ 339 (370)
T KOG3029|consen 260 WERDLAVYCGATAMYLISKMLKKKHNISDEREHLYDAADQWVAALGKNRPFLGGKKPNLADLSVFGVLRSMEGCQAFKDC 339 (370)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhCCCCCccCCCCCchhhhhhhhhhhHhhhhhHHHHH
Confidence 000 00 00 01112225556666777666667 5679999999999999999999988 4
Q ss_pred hhChhHHHHHHHhcch
Q 040899 121 TECPKIIAWAKRCTQR 136 (155)
Q Consensus 121 ~~~p~l~~~~~~~~~~ 136 (155)
-...++..|+.+|++.
T Consensus 340 ~q~t~I~eW~~rmeal 355 (370)
T KOG3029|consen 340 LQNTSIGEWYYRMEAL 355 (370)
T ss_pred HhcchHHHHHHHHHHH
Confidence 5678999999999763
No 63
>cd03187 GST_C_Phi GST_C family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes a
Probab=99.47 E-value=3e-13 Score=87.69 Aligned_cols=71 Identities=24% Similarity=0.394 Sum_probs=62.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcCCCCcccCCCcChhhhhHHHHHhHH--------hhhChhHHHHHHHhcchhhHHhhc
Q 040899 73 LERQEEMTKEFIAILKTLEEELGDKPHFEGENFGFVDVSLIPLYCWL--------ETECPKIIAWAKRCTQRKSVSKSL 143 (155)
Q Consensus 73 ~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aD~~~~~~l~~~--------~~~~p~l~~~~~~~~~~~~~~~~~ 143 (155)
+...+...+.+.+.++.||+.|++++|++|+++|+||+++++.+.++ ...+|++.+|++++.++|++++++
T Consensus 40 ~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aDi~l~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~ 118 (118)
T cd03187 40 EAVVEENEEKLKKVLDVYEARLSKSKYLAGDSFTLADLSHLPYLQYLMATPFAKLFDSRPHVKAWWEDISARPAWKKVL 118 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcccCcccCCCCccHHHHHHHHHHHHHHHccchhhhhcCchHHHHHHHHHhCHHHHhhC
Confidence 44556678899999999999999899999999999999999888765 457999999999999999998763
No 64
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=99.46 E-value=1.2e-13 Score=82.29 Aligned_cols=58 Identities=41% Similarity=0.596 Sum_probs=51.9
Q ss_pred ChHHhHHHHhCCCceeEecCCC---CCChhhhhcCCCCCccceEEe-CCeeeeehHHHHHHHH
Q 040899 1 MRVRIALAEKGIEYEYREQNLL---NKGPMLLQMNRVHKKVPVLIH-NGKPICESTNIVQYID 59 (155)
Q Consensus 1 ~r~~~~l~~~gi~~~~~~v~~~---~~~~~~~~~~p~~~~vP~l~~-~g~~i~es~aI~~yL~ 59 (155)
+|+|++|.++|++|+.+.++.. ...+++.+.||. +++|+|++ +|..++||.+|++||+
T Consensus 13 ~~~~~~L~~~~l~~~~~~v~~~~~~~~~~~~~~~~p~-~~vP~l~~~~~~~l~es~aI~~yLe 74 (74)
T cd03051 13 RRVRIFLAEKGIDVPLVTVDLAAGEQRSPEFLAKNPA-GTVPVLELDDGTVITESVAICRYLE 74 (74)
T ss_pred HHHHHHHHHcCCCceEEEeecccCccCCHHHHhhCCC-CCCCEEEeCCCCEEecHHHHHHHhC
Confidence 5899999999999999999864 356789999998 99999995 8889999999999985
No 65
>cd03196 GST_C_5 GST_C family, unknown subfamily 5; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=99.46 E-value=2.9e-13 Score=87.83 Aligned_cols=69 Identities=22% Similarity=0.363 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCcccCCCcChhhhhHHHHHhHH---------hhhChhHHHHHHHhcchhhHHhhc
Q 040899 75 RQEEMTKEFIAILKTLEEELGDKPHFEGENFGFVDVSLIPLYCWL---------ETECPKIIAWAKRCTQRKSVSKSL 143 (155)
Q Consensus 75 ~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aD~~~~~~l~~~---------~~~~p~l~~~~~~~~~~~~~~~~~ 143 (155)
..+...+.+.+.++.+|+.|++++|++|+++|+||+++++.+.++ ..++|+|.+|++++.++|+|++++
T Consensus 38 ~~~~~~~~i~~~l~~le~~L~~~~yl~Gd~~tlADi~l~~~l~~~~~~~~~~~~~~~~P~L~~w~~r~~~rpa~~~~~ 115 (115)
T cd03196 38 SEEEYRQQAEAFLKDLEARLQQHSYLLGDKPSLADWAIFPFVRQFAHVDPKWFDQSPYPRLRRWLNGFLASPLFSKIM 115 (115)
T ss_pred cHHHHHHHHHHHHHHHHHHHccCCccCCCCccHHHHHHHHHHHHHHHhhhcccCcccCHHHHHHHHHHHcChHHHhhC
Confidence 467788899999999999999999999999999999999887554 278999999999999999999863
No 66
>cd03080 GST_N_Metaxin_like GST_N family, Metaxin subfamily, Metaxin-like proteins; a heterogenous group of proteins, predominantly uncharacterized, with similarity to metaxins and GSTs. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. One characterized member of this subgroup is a novel GST from Rhodococcus with toluene o-monooxygenase and gamma-glutamylcysteine synthetase activities. Also members are the cadmium-inducible lysosomal protein CDR-1 and its homologs from C. elegans, and the failed axon connections (fax) protein from Drosophila. CDR-1 is an integral membrane protein that functions to protect against cadmium toxicity and may also have a role in osmoregulation to maintain salt balance in C. ele
Probab=99.46 E-value=1.8e-13 Score=82.22 Aligned_cols=55 Identities=27% Similarity=0.384 Sum_probs=49.7
Q ss_pred ChHHhHHHHhCCCceeEecCCCCCChhhhhcCCCCCccceEEeCCeeeeehHHHHHHHHHhCc
Q 040899 1 MRVRIALAEKGIEYEYREQNLLNKGPMLLQMNRVHKKVPVLIHNGKPICESTNIVQYIDEIHT 63 (155)
Q Consensus 1 ~r~~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~~~g~~i~es~aI~~yL~~~~~ 63 (155)
+|++++|.++|++|+.+.++. .+.||. |++|+|+++|.+++||.+|++||++.|+
T Consensus 21 ~~v~~~L~~~gi~~~~~~~~~-------~~~~p~-g~vPvl~~~g~~l~eS~~I~~yL~~~~~ 75 (75)
T cd03080 21 LKVETFLRMAGIPYENKFGGL-------AKRSPK-GKLPFIELNGEKIADSELIIDHLEEKYG 75 (75)
T ss_pred HHHHHHHHHCCCCcEEeecCc-------ccCCCC-CCCCEEEECCEEEcCHHHHHHHHHHHcC
Confidence 489999999999999988774 268998 9999999999999999999999999874
No 67
>cd03186 GST_C_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=99.45 E-value=5.2e-13 Score=85.30 Aligned_cols=70 Identities=30% Similarity=0.425 Sum_probs=62.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcCCCCcccCCCcChhhhhHHHHHhHH-------hhhChhHHHHHHHhcchhhHHhh
Q 040899 73 LERQEEMTKEFIAILKTLEEELGDKPHFEGENFGFVDVSLIPLYCWL-------ETECPKIIAWAKRCTQRKSVSKS 142 (155)
Q Consensus 73 ~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aD~~~~~~l~~~-------~~~~p~l~~~~~~~~~~~~~~~~ 142 (155)
++..+...+.+.+.++.+|+.|++++|++|+++|+||+++++.+.++ ...+|++.+|++++.++|+++++
T Consensus 30 ~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aDi~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~rpa~~~~ 106 (107)
T cd03186 30 KKEAEKARKELRESLLALAPVFAHKPYFMSEEFSLVDCALAPLLWRLPALGIELPKQAKPLKDYMERVFARDSFQKS 106 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCCcHHHHHHHHHHHHHHHcCCCCcccchHHHHHHHHHHCCHHHHHh
Confidence 45566778889999999999999999999999999999999998654 25699999999999999999875
No 68
>COG0435 ECM4 Predicted glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.44 E-value=1.6e-13 Score=98.86 Aligned_cols=109 Identities=19% Similarity=0.267 Sum_probs=91.2
Q ss_pred ccceEEeCC---eeeeehHHHHHHHHHhCcc-------------------hHH-------------HHhhchHHHHHHHH
Q 040899 37 KVPVLIHNG---KPICESTNIVQYIDEIHTD-------------------GRE-------------MRAVKLERQEEMTK 81 (155)
Q Consensus 37 ~vP~l~~~g---~~i~es~aI~~yL~~~~~~-------------------~~~-------------~~~~~~~~~~~~~~ 81 (155)
+||+|.+.. .+-.||..|++-+...|.. +.. .+...++.-++..+
T Consensus 129 TVPVLwDk~~~tIVnNES~eIirm~N~aFde~~~~~~dlyP~~Lr~eId~~n~~Iy~~vNNGVYk~GFA~tq~aYeea~~ 208 (324)
T COG0435 129 TVPVLWDKKTQTIVNNESAEIIRMFNSAFDEFGASAVDLYPEALRTEIDELNKWIYDTVNNGVYKAGFATTQEAYEEAVK 208 (324)
T ss_pred eEEEEEecCCCeeecCCcHHHHHHHHHHHHHHhhhccccCCHHHHHHHHHHHhhhcccccCceeeecccchHHHHHHHHH
Confidence 699999732 4568999999998776543 111 12224677888899
Q ss_pred HHHHHHHHHHHhcCCCCcccCCCcChhhhhHHHHHhHH--------------hhhChhHHHHHHHhcchhhHHhhcch
Q 040899 82 EFIAILKTLEEELGDKPHFEGENFGFVDVSLIPLYCWL--------------ETECPKIIAWAKRCTQRKSVSKSLKD 145 (155)
Q Consensus 82 ~~~~~l~~le~~L~~~~~l~G~~~t~aD~~~~~~l~~~--------------~~~~p~l~~~~~~~~~~~~~~~~~~~ 145 (155)
.+.+.|+.||..|+++.|++|+++|-||+.+++.|-++ ..+||+|..|+..+...|.|..+..=
T Consensus 209 ~lF~~Ld~lE~~L~~~ryl~Gd~lTEAD~RLftTlvRFD~VYvgHFKCN~~rI~dypnL~~yLr~LYq~pg~~~T~df 286 (324)
T COG0435 209 KLFEALDKLEQILSERRYLTGDQLTEADIRLFTTLVRFDPVYVGHFKCNLRRIRDYPNLWGYLRDLYQLPGFAETVDF 286 (324)
T ss_pred HHHHHHHHHHHHhhcCeeeccccchHhhhhhhheeEeecceEEeeeecccchhhcCchHHHHHHHHhcCcccccccch
Confidence 99999999999999999999999999999999999988 67899999999999999999988753
No 69
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=99.43 E-value=3e-13 Score=80.30 Aligned_cols=58 Identities=29% Similarity=0.392 Sum_probs=49.3
Q ss_pred ChHHhHHHHhCCCceeEecCCCCCChhhhhcCCCCCccceEEeC-CeeeeehHHHHHHHHH
Q 040899 1 MRVRIALAEKGIEYEYREQNLLNKGPMLLQMNRVHKKVPVLIHN-GKPICESTNIVQYIDE 60 (155)
Q Consensus 1 ~r~~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~~~-g~~i~es~aI~~yL~~ 60 (155)
+|+|++|.++|++|+.+.++.... ....+.+|. ++||+|+++ |..++||.+|++||++
T Consensus 13 ~rvr~~L~~~gl~~~~~~~~~~~~-~~~~~~~~~-~~vP~L~~~~~~~l~es~aI~~yL~~ 71 (71)
T cd03037 13 VKARMIAGLKNIPVEQIILQNDDE-ATPIRMIGA-KQVPILEKDDGSFMAESLDIVAFIDE 71 (71)
T ss_pred HHHHHHHHHcCCCeEEEECCCCch-HHHHHhcCC-CccCEEEeCCCeEeehHHHHHHHHhC
Confidence 589999999999999998885432 344578998 899999975 8999999999999974
No 70
>PF13410 GST_C_2: Glutathione S-transferase, C-terminal domain; PDB: 4DEJ_H 3IC8_A 2JL4_A 2V6K_B 3CBU_B 1JLW_B 3F6D_B 3G7I_A 3F63_A 3G7J_B ....
Probab=99.43 E-value=9.8e-13 Score=77.54 Aligned_cols=59 Identities=29% Similarity=0.508 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCcccCCCcChhhhhHHHHHhHH---------hhhChhHHHHHHH
Q 040899 74 ERQEEMTKEFIAILKTLEEELGDKPHFEGENFGFVDVSLIPLYCWL---------ETECPKIIAWAKR 132 (155)
Q Consensus 74 ~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aD~~~~~~l~~~---------~~~~p~l~~~~~~ 132 (155)
...+...+.+.+.++.+|+.|++++|+.|++||+||+++++.+.++ .+.+|+|.+|++|
T Consensus 2 ~~~~~~~~~~~~~l~~le~~L~~~~fl~G~~~s~aD~~l~~~l~~~~~~~~~~~~~~~~p~l~~w~~r 69 (69)
T PF13410_consen 2 AAVERARAQLEAALDALEDHLADGPFLFGDRPSLADIALAPFLWRLRFVGPDFDLLEAYPNLRAWYER 69 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSSBTTBSS--HHHHHHHHHHHHHHHCTHTCCHHTTSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHHhCcCcCccccCHHHHHHHhC
Confidence 4678889999999999999999999999999999999999999998 5789999999986
No 71
>cd03210 GST_C_Pi GST_C family, Class Pi subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Class Pi GST is a homodimeric eukaryotic protein. The human GSTP1 is mainly found in erythrocytes, kidney, placenta and fetal liver. It is involved in stress responses and in cellular proliferation pathways as an inhibitor of JNK (c-Jun N-terminal kinase). Following oxidative stress, monomeric GSTP1 dissociates from JNK and dimerizes, losing its ability to bind JNK and causing an incre
Probab=99.43 E-value=5.3e-13 Score=87.89 Aligned_cols=74 Identities=22% Similarity=0.344 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCC---CCcccCCCcChhhhhHHHHHhHH-------hhhChhHHHHHHHhcchhhHHhhc
Q 040899 74 ERQEEMTKEFIAILKTLEEELGD---KPHFEGENFGFVDVSLIPLYCWL-------ETECPKIIAWAKRCTQRKSVSKSL 143 (155)
Q Consensus 74 ~~~~~~~~~~~~~l~~le~~L~~---~~~l~G~~~t~aD~~~~~~l~~~-------~~~~p~l~~~~~~~~~~~~~~~~~ 143 (155)
...+...+.+.+.|..||+.|++ ++|++|+++|+||+++++.+.++ ...+|+|.+|++++.++|.|++++
T Consensus 31 ~~~~~~~~~~~~~l~~le~~L~~~~~~~~l~G~~~T~ADi~l~~~~~~~~~~~~~~~~~~P~l~~~~~rv~~~p~v~~~~ 110 (126)
T cd03210 31 AGKDDYIKDLPEQLKPFEKLLSKNNGKGFIVGDKISFADYNLFDLLDIHLVLAPGCLDAFPLLKAFVERLSARPKLKAYL 110 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCCeeeCCCccHHHHHHHHHHHHHHHhChHhhhcChHHHHHHHHHHhCcHHHHHH
Confidence 34556677799999999999963 58999999999999999988776 578999999999999999999998
Q ss_pred chhh
Q 040899 144 KDEK 147 (155)
Q Consensus 144 ~~~~ 147 (155)
..+.
T Consensus 111 ~~~~ 114 (126)
T cd03210 111 ESDA 114 (126)
T ss_pred hCcC
Confidence 8754
No 72
>cd03208 GST_C_Alpha GST_C family, Class Alpha subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Alpha subfamily is composed of vertebrate GSTs which can form homodimer and heterodimers. There are at least six types of class Alpha GST subunits in rats, four of which have human counterparts, resulting in many possible isoenzymes with different activities, tissue distribution and substrate specificities. Human GSTA1-1 and GSTA2-2 show high GSH peroxidase activity. GS
Probab=99.43 E-value=6.5e-13 Score=88.75 Aligned_cols=71 Identities=15% Similarity=0.202 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHHHHHHhcC--CCCcccCCCcChhhhhHHHHHhHH-------hhhChhHHHHHHHhcchhhHHhhcchhh
Q 040899 77 EEMTKEFIAILKTLEEELG--DKPHFEGENFGFVDVSLIPLYCWL-------ETECPKIIAWAKRCTQRKSVSKSLKDEK 147 (155)
Q Consensus 77 ~~~~~~~~~~l~~le~~L~--~~~~l~G~~~t~aD~~~~~~l~~~-------~~~~p~l~~~~~~~~~~~~~~~~~~~~~ 147 (155)
+...+.+.+.++.||+.|. +++|++|+++|+||+++++.+.++ ...||+|.+|++++.++|+++++++...
T Consensus 38 ~~~~~~~~~~l~~lE~~L~~~~~~~l~G~~~T~ADi~l~~~l~~~~~~~~~~l~~~P~l~~~~~rv~~~P~vk~~~~~~~ 117 (137)
T cd03208 38 LIKEKAKNRYFPVFEKVLKSHGQDFLVGNKLSRADIHLLEAILMVEELDPSLLSDFPLLQAFKTRISNLPTIKKFLQPGS 117 (137)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCeeeCCCCCHHHHHHHHHHHHHHHhchhhhccChHHHHHHHHHHcCHHHHHHHhcCC
Confidence 3334456899999999997 678999999999999999999886 5789999999999999999999998643
No 73
>cd03178 GST_C_Ure2p_like GST_C family, Ure2p-like subfamily; composed of the Saccharomyces cerevisiae Ure2p and related GSTs. Ure2p is a regulator for nitrogen catabolism in yeast. It represses the expression of several gene products involved in the use of poor nitrogen sources when rich sources are available. A transmissible conformational change of Ure2p results in a prion called [Ure3], an inactive, self-propagating and infectious amyloid. Ure2p displays a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. The N-terminal thioredoxin-fold domain is sufficient to induce the [Ure3] phenotype and is also called the prion domain of Ure2p. In addition to its role in nitrogen regulation, Ure2p confers protection to cells against heavy metal ion and oxidant toxicity, and shows glutathione (GSH) peroxidase activity. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of GSH with a wide range of en
Probab=99.42 E-value=6.3e-13 Score=85.59 Aligned_cols=71 Identities=21% Similarity=0.430 Sum_probs=64.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcCCCCcccCCCcChhhhhHHHHHhHH-------hhhChhHHHHHHHhcchhhHHhhc
Q 040899 73 LERQEEMTKEFIAILKTLEEELGDKPHFEGENFGFVDVSLIPLYCWL-------ETECPKIIAWAKRCTQRKSVSKSL 143 (155)
Q Consensus 73 ~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aD~~~~~~l~~~-------~~~~p~l~~~~~~~~~~~~~~~~~ 143 (155)
+...+...+.+.+.++.+|+.|++++|++|+++|+||+++++.+.+. ...+|++.+|++++.++|++++++
T Consensus 35 ~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aDi~l~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~p~~~~~~ 112 (113)
T cd03178 35 PYAIERYTNEAKRLYGVLDKRLAGRDYLAGDEYSIADIAIFPWVRRLEWIGIDDLDDFPNVKRWLDRIAARPAVQRGL 112 (113)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHccCCcccCCCCCeeeeeHHHHHHHHHhccccchhhchHHHHHHHHHhhCHHHHHhc
Confidence 44566778889999999999999889999999999999999999887 467999999999999999999875
No 74
>cd03203 GST_C_Lambda GST_C family, Class Lambda subfamily; composed of plant-specific class Lambda GSTs. GSTs are cytosolic, usually dimeric, proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Lambda subfamily was recently discovered, together with dehydroascorbate reductases (DHARs), as two outlying groups of the GST superfamily in Arabidopsis thaliana, which contain conserved active site cysteines. Characterization of recombinant A. thaliana proteins show that Lambda class GSTs are monomeric, similar
Probab=99.40 E-value=1e-12 Score=85.83 Aligned_cols=71 Identities=25% Similarity=0.533 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHhcC---CCCcccCCCcChhhhhHHHHHhHH------------hhhChhHHHHHHHhcchhhHHhhcchh
Q 040899 82 EFIAILKTLEEELG---DKPHFEGENFGFVDVSLIPLYCWL------------ETECPKIIAWAKRCTQRKSVSKSLKDE 146 (155)
Q Consensus 82 ~~~~~l~~le~~L~---~~~~l~G~~~t~aD~~~~~~l~~~------------~~~~p~l~~~~~~~~~~~~~~~~~~~~ 146 (155)
.+.+.++.||+.|+ +++|+.| ++|+||+++++.+.++ ...+|+|.+|+++|.++|+++++.+..
T Consensus 34 ~~~~~l~~Le~~L~~~~~~~fl~G-~~tlADi~l~~~~~~~~~~~~~~~~~~~~~~~P~l~~W~~~~~~rp~~~~~~~~~ 112 (120)
T cd03203 34 EAAAALDYIENALSKFDDGPFFLG-QFSLVDIAYVPFIERFQIFLSELFNYDITEGRPNLAAWIEEMNKIEAYTQTKQDP 112 (120)
T ss_pred HHHHHHHHHHHHHHhcCCCCCcCC-CccHHHHHHHHHHHHHHHHHHHhcCccccccCcHHHHHHHHHhcchHHHhHcCCH
Confidence 44667788888885 4799999 9999999999988643 258999999999999999999999998
Q ss_pred hHHhhhh
Q 040899 147 KKVLGFV 153 (155)
Q Consensus 147 ~~~~~~~ 153 (155)
+.+.+++
T Consensus 113 ~~~~~~~ 119 (120)
T cd03203 113 QELLDLA 119 (120)
T ss_pred HHHHhhh
Confidence 8887765
No 75
>cd03177 GST_C_Delta_Epsilon GST_C family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites th
Probab=99.40 E-value=1.4e-12 Score=84.77 Aligned_cols=71 Identities=23% Similarity=0.298 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCcccCCCcChhhhhHHHHHhHH-------hhhChhHHHHHHHhcchhhHHhhcc
Q 040899 74 ERQEEMTKEFIAILKTLEEELGDKPHFEGENFGFVDVSLIPLYCWL-------ETECPKIIAWAKRCTQRKSVSKSLK 144 (155)
Q Consensus 74 ~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aD~~~~~~l~~~-------~~~~p~l~~~~~~~~~~~~~~~~~~ 144 (155)
...+...+.+.+.++.+|+.|++++|++|+++|+||+++++.+.++ ...+|++.+|+++|.++|++++...
T Consensus 34 ~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~s~aDi~l~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~p~~~~~~~ 111 (118)
T cd03177 34 EPPEEKLDKLEEALDFLETFLEGSDYVAGDQLTIADLSLVATVSTLEALLPLDLSKYPNVRAWLERLKALPPYEEANG 111 (118)
T ss_pred CCCHHHHHHHHHHHHHHHHHHccCCeeCCCCcCHHHHHHHHHHHHHHHhcCCChhhCchHHHHHHHHHcccchHHHHH
Confidence 4456677889999999999998889999999999999999998776 4579999999999999999998653
No 76
>cd03191 GST_C_Zeta GST_C family, Class Zeta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Class Zeta GSTs, also known as maleylacetoacetate (MAA) isomerases, catalyze the isomerization of MAA to fumarylacetoacetate, the penultimate step in tyrosine/phenylalanine catabolism, using GSH as a cofactor. They show little GSH-conjugating activity towards traditional GST substrates, but display modest GSH peroxidase activity. They are also implicated in the detoxification of th
Probab=99.39 E-value=1.6e-12 Score=84.77 Aligned_cols=70 Identities=16% Similarity=0.171 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHHHHHHhcC--CCCcccCCCcChhhhhHHHHHhHH------hhhChhHHHHHHHhcchhhHHhhcchh
Q 040899 77 EEMTKEFIAILKTLEEELG--DKPHFEGENFGFVDVSLIPLYCWL------ETECPKIIAWAKRCTQRKSVSKSLKDE 146 (155)
Q Consensus 77 ~~~~~~~~~~l~~le~~L~--~~~~l~G~~~t~aD~~~~~~l~~~------~~~~p~l~~~~~~~~~~~~~~~~~~~~ 146 (155)
+...+.+.+.|+.+|+.|+ .++|++|+++|+||+++++.+.+. ...+|+|.+|++++.++|.|+++.+.+
T Consensus 43 ~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~t~ADi~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~p~~~~~~~~~ 120 (121)
T cd03191 43 AWYRHWIARGFAALEKLLAQTAGKFCFGDEPTLADICLVPQVYNARRFGVDLSPYPTIARINEACLELPAFQAAHPDN 120 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCeecCCcCCHHHHHHHHHHHHHHHhCCCcccCcHHHHHHHHHHhChhHHHhCcCc
Confidence 3445668999999999997 457999999999999999998876 478999999999999999999987653
No 77
>cd03181 GST_C_EFB1gamma GST_C family, Gamma subunit of Elongation Factor 1B (EFB1gamma) subfamily; EF1Bgamma is part of the eukaryotic translation elongation factor-1 (EF1) complex which plays a central role in the elongation cycle during protein biosynthesis. EF1 consists of two functionally distinct units, EF1A and EF1B. EF1A catalyzes the GTP-dependent binding of aminoacyl-tRNA to the ribosomal A site concomitant with the hydrolysis of GTP. The resulting inactive EF1A:GDP complex is recycled to the active GTP form by the guanine-nucleotide exchange factor EF1B, a complex composed of at least two subunits, alpha and gamma. Metazoan EFB1 contain a third subunit, beta. The EF1B gamma subunit contains a GST fold consisting of an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. The GST-like domain of EF1Bgamma is believed to mediate the dimerization of the EF1 complex, which in yeast is a dimer of the heterotrimer EF1A:EF1Balpha:EF1Bgamma. In addition to its role
Probab=99.38 E-value=2.4e-12 Score=84.06 Aligned_cols=75 Identities=17% Similarity=0.259 Sum_probs=66.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcCCCCcccCCCcChhhhhHHHHHhHH---------hhhChhHHHHHHHhcchhhHHhhc
Q 040899 73 LERQEEMTKEFIAILKTLEEELGDKPHFEGENFGFVDVSLIPLYCWL---------ETECPKIIAWAKRCTQRKSVSKSL 143 (155)
Q Consensus 73 ~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aD~~~~~~l~~~---------~~~~p~l~~~~~~~~~~~~~~~~~ 143 (155)
....+...+.+.+.++.+|+.|++++|++|+++|+||+++++.+.++ ...+|++.+|++++.++|+|++++
T Consensus 35 ~~~~~~~~~~~~~~l~~le~~l~~~~~l~G~~~siaDi~l~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~p~~~~~~ 114 (123)
T cd03181 35 KKSVEAALEELDRVLGVLEERLLKRTYLVGERLTLADIFVAGALLLGFTYVFDKEWRAKYPNVTRWFNTVVNQPIFKAVF 114 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCceeccCCccHHHHHHHHHHHHHHHHHcCHHHHHhChHHHHHHHHHHcCHHHHHHc
Confidence 34567788889999999999999889999999999999999988875 257999999999999999999998
Q ss_pred chhh
Q 040899 144 KDEK 147 (155)
Q Consensus 144 ~~~~ 147 (155)
++.+
T Consensus 115 ~~~~ 118 (123)
T cd03181 115 GEVK 118 (123)
T ss_pred CCCC
Confidence 7653
No 78
>cd03183 GST_C_Theta GST_C family, Class Theta subfamily; composed of eukaryotic class Theta GSTs and bacterial dichloromethane (DCM) dehalogenase. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Mammalian class Theta GSTs show poor GSH conjugating activity towards the standard substrates, CDNB and ethacrynic acid, differentiating them from other mammalian GSTs. GSTT1-1 shows similar cataytic activity as bacterial DCM dehalogenase, catalyzing the GSH-dependent hydrolytic dehalogenatio
Probab=99.38 E-value=2.5e-12 Score=84.50 Aligned_cols=72 Identities=25% Similarity=0.358 Sum_probs=62.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHh-cCCCCcccCCCcChhhhhHHHHHhHH-------hhhChhHHHHHHHhcc--hhhHHhh
Q 040899 73 LERQEEMTKEFIAILKTLEEE-LGDKPHFEGENFGFVDVSLIPLYCWL-------ETECPKIIAWAKRCTQ--RKSVSKS 142 (155)
Q Consensus 73 ~~~~~~~~~~~~~~l~~le~~-L~~~~~l~G~~~t~aD~~~~~~l~~~-------~~~~p~l~~~~~~~~~--~~~~~~~ 142 (155)
++..+...+.+.+.++.+|+. +++++|++|+++|+||+++++.+.+. ..++|+|.+|++++.+ +|+++++
T Consensus 40 ~~~~~~~~~~~~~~l~~le~~l~~~~~~l~Gd~~t~ADi~l~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~~~p~~~~~ 119 (126)
T cd03183 40 PEKVKKAEENLEESLDLLENYFLKDKPFLAGDEISIADLSAVCEIMQPEAAGYDVFEGRPKLAAWRKRVKEAGNPLFDEA 119 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCcccCCCCCHHHHHHHHHHHHHHhcCCcccccCchHHHHHHHHHHhcchhHHHH
Confidence 455677788899999999998 45578999999999999999988665 4779999999999999 9999997
Q ss_pred cc
Q 040899 143 LK 144 (155)
Q Consensus 143 ~~ 144 (155)
.+
T Consensus 120 ~~ 121 (126)
T cd03183 120 HK 121 (126)
T ss_pred HH
Confidence 64
No 79
>cd03180 GST_C_2 GST_C family, unknown subfamily 2; composed of uncharacterized bacterial proteins, with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=99.36 E-value=2.7e-12 Score=82.07 Aligned_cols=66 Identities=17% Similarity=0.332 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCcccCCCcChhhhhHHHHHhHH------hhhChhHHHHHHHhcchhhH
Q 040899 74 ERQEEMTKEFIAILKTLEEELGDKPHFEGENFGFVDVSLIPLYCWL------ETECPKIIAWAKRCTQRKSV 139 (155)
Q Consensus 74 ~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aD~~~~~~l~~~------~~~~p~l~~~~~~~~~~~~~ 139 (155)
...+...+.+.+.|+.+|+.|++++|++|+++|+||+++++.+... ...+|+|.+|++++.++|+|
T Consensus 39 ~~~~~~~~~~~~~l~~lE~~L~~~~~l~g~~~t~aDi~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~ 110 (110)
T cd03180 39 AAIAASLAAWAKLMAILDAQLAGRPYLAGDRFTLADIPLGCSAYRWFELPIERPPLPHLERWYARLRARPAF 110 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCcccCCCCCHHHHHHHHHHHHHHHcccccccCchHHHHHHHHHhCCCC
Confidence 3456678899999999999999889999999999999999888533 57899999999999999975
No 80
>cd03206 GST_C_7 GST_C family, unknown subfamily 7; composed of uncharacterized proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=99.36 E-value=3e-12 Score=80.88 Aligned_cols=65 Identities=22% Similarity=0.351 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCcccCCCcChhhhhHHHHHhHH------hhhChhHHHHHHHhcchhhH
Q 040899 75 RQEEMTKEFIAILKTLEEELGDKPHFEGENFGFVDVSLIPLYCWL------ETECPKIIAWAKRCTQRKSV 139 (155)
Q Consensus 75 ~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aD~~~~~~l~~~------~~~~p~l~~~~~~~~~~~~~ 139 (155)
..+...+.+.+.++.+|+.|++++|++|+++|+||+++++.+.+. ...+|+|.+|++++.++|++
T Consensus 30 ~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aDi~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~ 100 (100)
T cd03206 30 DKETAIARAHRLLRLLEEHLAGRDWLAGDRPTIADVAVYPYVALAPEGGVDLEDYPAIRRWLARIEALPGF 100 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHccCCccCCCCCCHHHHHHHHHHHHHhccCCChhhCcHHHHHHHHHHhCcCC
Confidence 456678899999999999999999999999999999999998765 57899999999999999975
No 81
>cd03204 GST_C_GDAP1 GST_C family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal thioredoxin-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=99.36 E-value=2.7e-12 Score=82.51 Aligned_cols=68 Identities=26% Similarity=0.396 Sum_probs=59.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHhcCCC----------CcccCCCcChhhhhHHHHHhHH------h-----hhChhHHHHH
Q 040899 72 KLERQEEMTKEFIAILKTLEEELGDK----------PHFEGENFGFVDVSLIPLYCWL------E-----TECPKIIAWA 130 (155)
Q Consensus 72 ~~~~~~~~~~~~~~~l~~le~~L~~~----------~~l~G~~~t~aD~~~~~~l~~~------~-----~~~p~l~~~~ 130 (155)
+.+..+...+.+.+.++.+|.+|.++ +|++|+++|+||+++++.+.++ . ..+|+|.+|+
T Consensus 23 ~~~~i~~~~~~l~~~l~~LE~~L~~~~~~~~~~~~~~yL~Gd~~TlADi~l~~~l~~~~~~~~~~~~~~~~~~P~l~~w~ 102 (111)
T cd03204 23 NVEYLKKILDELEMVLDQVEQELQRRKEETEEQKCQLWLCGDTFTLADISLGVTLHRLKFLGLSRRYWGNGKRPNLEAYF 102 (111)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccCCCccCCCCCCHHHHHHHHHHHHHHHcCccccccccccChHHHHHH
Confidence 35567888999999999999999654 4999999999999999999887 1 3699999999
Q ss_pred HHhcchhhH
Q 040899 131 KRCTQRKSV 139 (155)
Q Consensus 131 ~~~~~~~~~ 139 (155)
+++.+||+|
T Consensus 103 ~rv~aRpsf 111 (111)
T cd03204 103 ERVLQRESF 111 (111)
T ss_pred HHHHcCCCC
Confidence 999999975
No 82
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=99.34 E-value=1.8e-12 Score=78.04 Aligned_cols=60 Identities=28% Similarity=0.428 Sum_probs=50.2
Q ss_pred ChHHhHHHHhCCCceeEecCCCCCChhhhhcCCCCCccceEEeC----CeeeeehHHHHHHHHHhCc
Q 040899 1 MRVRIALAEKGIEYEYREQNLLNKGPMLLQMNRVHKKVPVLIHN----GKPICESTNIVQYIDEIHT 63 (155)
Q Consensus 1 ~r~~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~~~----g~~i~es~aI~~yL~~~~~ 63 (155)
+|++++|.++|++|+.+.+++... +++ +.+|. ++||+|+++ |.++.||.+|++||++..+
T Consensus 14 ~kv~~~L~~~gi~y~~~~~~~~~~-~~~-~~~~~-~~vP~l~~~~~~~~~~l~eS~~I~~yL~~~~~ 77 (77)
T cd03040 14 CKVRAFLDYHGIPYEVVEVNPVSR-KEI-KWSSY-KKVPILRVESGGDGQQLVDSSVIISTLKTYLG 77 (77)
T ss_pred HHHHHHHHHCCCceEEEECCchhH-HHH-HHhCC-CccCEEEECCCCCccEEEcHHHHHHHHHHHcC
Confidence 589999999999999998876432 333 56997 999999964 7899999999999998653
No 83
>cd03189 GST_C_GTT1_like GST_C family, Saccharomyces cerevisiae GTT1-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT1, and the Schizosaccharomyces pombe GST-III. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. GTT1, a homodimer, exhibits GST activity with standard substrates and associates with the endopl
Probab=99.33 E-value=5.6e-12 Score=81.89 Aligned_cols=64 Identities=22% Similarity=0.223 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCcccCCCcChhhhhHHHHHhHH------hhhChhHHHHHHHhcchh
Q 040899 74 ERQEEMTKEFIAILKTLEEELGDKPHFEGENFGFVDVSLIPLYCWL------ETECPKIIAWAKRCTQRK 137 (155)
Q Consensus 74 ~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aD~~~~~~l~~~------~~~~p~l~~~~~~~~~~~ 137 (155)
...+.....+.+.++.+|+.|++++|++|+++|+||+++++.+.++ ...+|++.+|++++.++|
T Consensus 50 ~~~~~~~~~~~~~l~~le~~L~~~~~l~Gd~~t~ADi~l~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~p 119 (119)
T cd03189 50 VLAGFINPELKKHLDFLEDRLAKKGYFVGDKLTAADIMMSFPLEAALARGPLLEKYPNIAAYLERIEARP 119 (119)
T ss_pred HHHHHHhHHHHHHHHHHHHHHccCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCchHHHHHHHHhcCC
Confidence 3455667789999999999999999999999999999999888776 578999999999999886
No 84
>cd03054 GST_N_Metaxin GST_N family, Metaxin subfamily; composed of metaxins and related proteins. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities.
Probab=99.33 E-value=3.5e-12 Score=75.84 Aligned_cols=53 Identities=28% Similarity=0.407 Sum_probs=47.5
Q ss_pred ChHHhHHHHhCCCceeEecCCCCCChhhhhcCCCCCccceEEeCCeeeeehHHHHHHHHHh
Q 040899 1 MRVRIALAEKGIEYEYREQNLLNKGPMLLQMNRVHKKVPVLIHNGKPICESTNIVQYIDEI 61 (155)
Q Consensus 1 ~r~~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~~~g~~i~es~aI~~yL~~~ 61 (155)
+|++++|+++|++|+.+.++.. ..+|. |+||+|+++|..+.||.+|++||+++
T Consensus 20 ~~v~~~L~~~~i~~~~~~~~~~-------~~~p~-g~vP~l~~~g~~l~es~~I~~yL~~~ 72 (72)
T cd03054 20 LKVETYLRMAGIPYEVVFSSNP-------WRSPT-GKLPFLELNGEKIADSEKIIEYLKKK 72 (72)
T ss_pred HHHHHHHHhCCCceEEEecCCc-------ccCCC-cccCEEEECCEEEcCHHHHHHHHhhC
Confidence 4899999999999999988752 27898 99999999999999999999999863
No 85
>cd03182 GST_C_GTT2_like GST_C family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensiti
Probab=99.32 E-value=6.4e-12 Score=81.35 Aligned_cols=67 Identities=22% Similarity=0.323 Sum_probs=60.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcCCCCcccCCCcChhhhhHHHHHhHH-------hhhChhHHHHHHHhcchhhH
Q 040899 73 LERQEEMTKEFIAILKTLEEELGDKPHFEGENFGFVDVSLIPLYCWL-------ETECPKIIAWAKRCTQRKSV 139 (155)
Q Consensus 73 ~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aD~~~~~~l~~~-------~~~~p~l~~~~~~~~~~~~~ 139 (155)
+...+...+.+.+.|..+|+.|++++|++|+++|+||+++++.+.++ ...+|+|.+|++++.++|++
T Consensus 44 ~~~~~~~~~~l~~~l~~le~~L~~~~~l~gd~~t~aDi~l~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~p~~ 117 (117)
T cd03182 44 PEWGERSKARAADFLAYLDTRLAGSPYVAGDRFTIADITAFVGLDFAKVVKLRVPEELTHLRAWYDRMAARPSA 117 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCcccCCCCCHHHHHHHHHhHHHHhcCCCCccccHHHHHHHHHHHhccCC
Confidence 44567788889999999999999889999999999999999999887 25899999999999999974
No 86
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=99.29 E-value=9.8e-12 Score=72.61 Aligned_cols=58 Identities=40% Similarity=0.606 Sum_probs=51.1
Q ss_pred ChHHhHHHHhCCCceeEecCCCCCCh-hhhhcCCCCCccceEEeCCeeeeehHHHHHHHH
Q 040899 1 MRVRIALAEKGIEYEYREQNLLNKGP-MLLQMNRVHKKVPVLIHNGKPICESTNIVQYID 59 (155)
Q Consensus 1 ~r~~~~l~~~gi~~~~~~v~~~~~~~-~~~~~~p~~~~vP~l~~~g~~i~es~aI~~yL~ 59 (155)
+|++++|+++|++|+.+.++...... ++.+.+|. +++|+|+++|.+++||.+|++||+
T Consensus 13 ~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~P~l~~~~~~~~es~~I~~yl~ 71 (71)
T cd00570 13 LRVRLALEEKGLPYELVPVDLGEGEQEEFLALNPL-GKVPVLEDGGLVLTESLAILEYLA 71 (71)
T ss_pred HHHHHHHHHcCCCcEEEEeCCCCCCCHHHHhcCCC-CCCCEEEECCEEEEcHHHHHHHhC
Confidence 47899999999999999998764333 58889998 999999999999999999999984
No 87
>cd03194 GST_C_3 GST_C family, unknown subfamily 3; composed of uncharacterized proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=99.29 E-value=1.9e-11 Score=79.11 Aligned_cols=68 Identities=16% Similarity=0.247 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHHHHHHhc---CCCCcccCCCcChhhhhHHHHHhHH----hhhChhHHHHHHHhcchhhHHhhcc
Q 040899 76 QEEMTKEFIAILKTLEEEL---GDKPHFEGENFGFVDVSLIPLYCWL----ETECPKIIAWAKRCTQRKSVSKSLK 144 (155)
Q Consensus 76 ~~~~~~~~~~~l~~le~~L---~~~~~l~G~~~t~aD~~~~~~l~~~----~~~~p~l~~~~~~~~~~~~~~~~~~ 144 (155)
.+...+.+.+.++.+|..+ ++++|++|+ +|+||+++++.+.+. ....|++.+|++++.++|++++++.
T Consensus 39 ~~~~~~~~~~~~~~le~~l~~~~~~~yl~Gd-~T~ADi~l~~~~~~~~~~~~~~~P~l~~~~~rv~~rPsv~~~~~ 113 (114)
T cd03194 39 SEAVQADIARIEAIWAECLARFQGGPFLFGD-FSIADAFFAPVVTRFRTYGLPLSPAAQAYVDALLAHPAMQEWIA 113 (114)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCCCCCCCC-CcHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHCCHHHHHHHh
Confidence 3455555666666666655 567899999 999999999999887 3334999999999999999999875
No 88
>cd03079 GST_N_Metaxin2 GST_N family, Metaxin subfamily, Metaxin 2; a metaxin 1 binding protein identified through a yeast two-hybrid system using metaxin 1 as the bait. Metaxin 2 shares sequence similarity with metaxin 1 but does not contain a C-terminal mitochondrial outer membrane signal-anchor domain. It associates with mitochondrial membranes through its interaction with metaxin 1, which is a component of the mitochondrial preprotein import complex of the outer membrane. The biological function of metaxin 2 is unknown. It is likely that it also plays a role in protein translocation into the mitochondria. However, this has not been experimentally validated. In a recent proteomics study, it has been shown that metaxin 2 is overexpressed in response to lipopolysaccharide-induced liver injury.
Probab=99.27 E-value=1.6e-11 Score=73.03 Aligned_cols=53 Identities=21% Similarity=0.246 Sum_probs=44.2
Q ss_pred hHHhHHHHhCCCceeEecCCCCCChhhhhcCCCCCccceEEeCCeeeeehHHHHHHHHHh
Q 040899 2 RVRIALAEKGIEYEYREQNLLNKGPMLLQMNRVHKKVPVLIHNGKPICESTNIVQYIDEI 61 (155)
Q Consensus 2 r~~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~~~g~~i~es~aI~~yL~~~ 61 (155)
|++++|.+.|+||+.+.... .+ ..+|. |+||+|++||.+++||.+|+.||+++
T Consensus 22 kv~~~L~elglpye~~~~~~----~~--~~~P~-GkVP~L~~dg~vI~eS~aIl~yL~~~ 74 (74)
T cd03079 22 AVQTFLKMCNLPFNVRCRAN----AE--FMSPS-GKVPFIRVGNQIVSEFGPIVQFVEAK 74 (74)
T ss_pred HHHHHHHHcCCCcEEEecCC----cc--ccCCC-CcccEEEECCEEEeCHHHHHHHHhcC
Confidence 78999999999999884321 11 26787 99999999999999999999999763
No 89
>KOG2903 consensus Predicted glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.24 E-value=8.4e-12 Score=89.38 Aligned_cols=108 Identities=22% Similarity=0.262 Sum_probs=88.6
Q ss_pred ccceEEeC---CeeeeehHHHHHHHHHhCcc------------------------------------hHHHHhhchHHHH
Q 040899 37 KVPVLIHN---GKPICESTNIVQYIDEIHTD------------------------------------GREMRAVKLERQE 77 (155)
Q Consensus 37 ~vP~l~~~---g~~i~es~aI~~yL~~~~~~------------------------------------~~~~~~~~~~~~~ 77 (155)
+||+|.|. ..+-.||..|++.+.+.|.. +.+.+...++.-+
T Consensus 123 TVPVLWD~k~ktIVnNES~eIIr~fNs~f~ef~~~~e~~~lDL~P~~L~~~Ide~N~wvy~~INNGVYk~GFA~~~e~Ye 202 (319)
T KOG2903|consen 123 TVPVLWDLKTKTIVNNESSEIIRMFNSAFDEFNGIAENPVLDLYPSSLRAQIDETNSWVYDKINNGVYKCGFAEKQEAYE 202 (319)
T ss_pred EEEEEEccccceeecCchHHHHHHHhhhhhhhhccccCCccccCCHHHHHHHhhhhceecccccCceeeeccccccchHH
Confidence 69999873 35679999999999854433 1112233466778
Q ss_pred HHHHHHHHHHHHHHHhcCCCC--cccCCCcChhhhhHHHHHhHH---------------hhhChhHHHHHHHhcc-hhhH
Q 040899 78 EMTKEFIAILKTLEEELGDKP--HFEGENFGFVDVSLIPLYCWL---------------ETECPKIIAWAKRCTQ-RKSV 139 (155)
Q Consensus 78 ~~~~~~~~~l~~le~~L~~~~--~l~G~~~t~aD~~~~~~l~~~---------------~~~~p~l~~~~~~~~~-~~~~ 139 (155)
...+.+.+.|+.+|..|+++. |+.|+++|.||+.+++.+-++ ..+||+|..|++++.. .|+|
T Consensus 203 ~~V~~lfe~LDr~E~vL~~~~~~f~~G~~LTeaDirLy~TiIRFD~VY~~hFKCn~~~ir~~Yp~l~~~lk~iY~~~~~~ 282 (319)
T KOG2903|consen 203 EEVNQLFEALDRCEDVLGKNRKYFLCGDTLTEADIRLYTTIIRFDEVYVQHFKCNKKTIRDEYPNLHNWLKNIYWNIPGF 282 (319)
T ss_pred HHHHHHHHHHHHHHHHHhcccceEeeccccchhheeeeeeEEeehhhhheeeecchhhhhccCcHHHHHHHHHHhhccch
Confidence 888899999999999998876 999999999999999998877 4599999999999999 9999
Q ss_pred Hhhcc
Q 040899 140 SKSLK 144 (155)
Q Consensus 140 ~~~~~ 144 (155)
+.+..
T Consensus 283 ~~Ttd 287 (319)
T KOG2903|consen 283 SSTTD 287 (319)
T ss_pred hhccc
Confidence 88765
No 90
>cd03195 GST_C_4 GST_C family, unknown subfamily 4; composed of uncharacterized proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=99.21 E-value=6e-11 Score=76.80 Aligned_cols=69 Identities=20% Similarity=0.204 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHHHHHHHhcC-CCCcccCCCcChhhhhHHHHHhHH----hhhChhHHHHHHHhcchhhHHhhcc
Q 040899 75 RQEEMTKEFIAILKTLEEELG-DKPHFEGENFGFVDVSLIPLYCWL----ETECPKIIAWAKRCTQRKSVSKSLK 144 (155)
Q Consensus 75 ~~~~~~~~~~~~l~~le~~L~-~~~~l~G~~~t~aD~~~~~~l~~~----~~~~p~l~~~~~~~~~~~~~~~~~~ 144 (155)
..+...+.+.+.+..+|..|+ +++||+| ++|+||+++++.+.++ ..--|++.+|++++.+||+|+++++
T Consensus 39 ~~~~~~~~~~~~~~~le~~l~~~~~~l~G-~fSiAD~~l~~~~~~~~~~g~~l~p~l~ay~~r~~~rPa~~~~~~ 112 (114)
T cd03195 39 LSEAAQAAAEKLIAVAEALLPPGAANLFG-EWCIADTDLALMLNRLVLNGDPVPERLRDYARRQWQRPSVQAWLA 112 (114)
T ss_pred CCHHHHHHHHHHHHHHHHHHhcCCCcccC-CccHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHCCHHHHHHHh
Confidence 445677788999999999995 5589999 5999999999999998 1112999999999999999999875
No 91
>PF14497 GST_C_3: Glutathione S-transferase, C-terminal domain; PDB: 3AY8_A 2UZ8_B 1V2A_C 2HNL_A 2YV9_B 3H1N_A 3FR6_A 1Q4J_B 1PA3_B 1OKT_B ....
Probab=99.20 E-value=4.2e-11 Score=75.51 Aligned_cols=63 Identities=19% Similarity=0.379 Sum_probs=52.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcCCCC--cccCCCcChhhhhHHHHHhHH----h-hhChhHHHHHHHhcc
Q 040899 73 LERQEEMTKEFIAILKTLEEELGDKP--HFEGENFGFVDVSLIPLYCWL----E-TECPKIIAWAKRCTQ 135 (155)
Q Consensus 73 ~~~~~~~~~~~~~~l~~le~~L~~~~--~l~G~~~t~aD~~~~~~l~~~----~-~~~p~l~~~~~~~~~ 135 (155)
....+...+.+.+.++.+|++|++++ |++|++||+||+++++.+..+ . +.+|+|.+|++||.+
T Consensus 30 ~~~~~~~~~~~~~~l~~l~~~L~~~~~~~l~G~~~T~AD~~v~~~l~~~~~~~~~~~~p~L~~w~~ri~~ 99 (99)
T PF14497_consen 30 EASGDFSREELPKALKILEKHLAERGGDFLVGDKPTLADIAVFGFLASLRWADFPKDYPNLVRWYERIEE 99 (99)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHTSSSSSSSSS--HHHHHHHHHHHHHHCCHHTTTCHHHHHHHHHHHT
T ss_pred hhhHHhhHHHHHHHHHHHHHHHHcCCCeeecCCCCCHHHHHHHHHHHHHhhcccccccHHHHHHHHhhcC
Confidence 44577788899999999999997766 999999999999999999766 3 499999999999864
No 92
>cd03193 GST_C_Metaxin GST_C family, Metaxin subfamily; composed of metaxins and related proteins. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken, and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities. Other members are the cadmium-inducible
Probab=99.20 E-value=1.2e-10 Score=71.78 Aligned_cols=60 Identities=23% Similarity=0.321 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCcccCCCcChhhhhHHHHHhHH-------------hhhChhHHHHHHHhc
Q 040899 75 RQEEMTKEFIAILKTLEEELGDKPHFEGENFGFVDVSLIPLYCWL-------------ETECPKIIAWAKRCT 134 (155)
Q Consensus 75 ~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aD~~~~~~l~~~-------------~~~~p~l~~~~~~~~ 134 (155)
......+.+.+.++.+|+.|++++|++|+++|+||+++++.+.++ ...+|++.+|++++.
T Consensus 16 ~~~~~~~~~~~~l~~le~~L~~~~yl~Gd~~t~aDi~l~~~l~~~~~~~~~~~~~~~~~~~~p~l~~~~~r~~ 88 (88)
T cd03193 16 LTREIYSLAKKDLKALSDLLGDKKFFFGDKPTSLDATVFGHLASILYAPLPNSALQLILKEYPNLVEYCERIR 88 (88)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCccCCCCCCHHHHHHHHHHHHHHhcCCCChHHHHHHHhCcHHHHHHHHhC
Confidence 344678889999999999999999999999999999999998765 246899999999874
No 93
>cd03202 GST_C_etherase_LigE GST_C family, Beta etherase LigE subfamily; composed of proteins similar to Sphingomonas paucimobilis beta etherase, LigE, a GST-like protein that catalyzes the cleavage of the beta-aryl ether linkages present in low-moleculer weight lignins using GSH as the hydrogen donor. This reaction is an essential step in the degradation of lignin, a complex phenolic polymer that is the most abundant aromatic material in the biosphere. The beta etherase activity of LigE is enantioselective and it complements the activity of the other GST family beta etherase, LigF. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.19 E-value=6e-11 Score=77.91 Aligned_cols=61 Identities=23% Similarity=0.445 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCcccCCCcChhhhhHHHHHhHH--------hhhChhHHHHHHHhcc
Q 040899 75 RQEEMTKEFIAILKTLEEELGDKPHFEGENFGFVDVSLIPLYCWL--------ETECPKIIAWAKRCTQ 135 (155)
Q Consensus 75 ~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aD~~~~~~l~~~--------~~~~p~l~~~~~~~~~ 135 (155)
..+...+.+.+.++.+|+.|++++|+.|+++|+||+++++.+.+. .+.+|++.+|+++|.+
T Consensus 55 ~~~~~~~~~~~~l~~l~~~L~~~~fl~Gd~~t~AD~~l~~~l~~~~~~~~~~~~~~~p~l~~W~~r~~~ 123 (124)
T cd03202 55 GREAALANFRAALEPLRATLKGQPFLGGAAPNYADYIVFGGFQWARIVSPFPLLEEDDPVYDWFERCLD 123 (124)
T ss_pred chHHHHHHHHHHHHHHHHHHcCCCccCCCCCchhHHHHHHHHHHHHHcCcccccccCChHHHHHHHHhc
Confidence 356777889999999999999999999999999999999998877 3689999999999976
No 94
>cd03179 GST_C_1 GST_C family, unknown subfamily 1; composed of uncharacterized bacterial proteins, with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=99.19 E-value=8.7e-11 Score=74.46 Aligned_cols=62 Identities=23% Similarity=0.298 Sum_probs=55.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcCCCCcccCCCcChhhhhHHHHHhHH------hhhChhHHHHHHHhc
Q 040899 73 LERQEEMTKEFIAILKTLEEELGDKPHFEGENFGFVDVSLIPLYCWL------ETECPKIIAWAKRCT 134 (155)
Q Consensus 73 ~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aD~~~~~~l~~~------~~~~p~l~~~~~~~~ 134 (155)
++..+...+.+.+.++.+|+.|++++|+.|+++|+||+++++.+.++ ...+|++.+|+++++
T Consensus 38 ~~~~~~~~~~~~~~l~~le~~L~~~~~l~g~~~slaDi~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~ 105 (105)
T cd03179 38 AEVLAFLRERGHAALAVLEAHLAGRDFLVGDALTIADIALAAYTHVADEGGFDLADYPAIRAWLARIE 105 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCccccCCCCCHHHHHHHHHHHhccccCCChHhCccHHHHHHhhC
Confidence 45567788999999999999998889999999999999999999887 467999999999874
No 95
>cd03200 GST_C_JTV1 GST_C family, JTV-1 subfamily; composed of uncharacterized proteins with similarity to the translation product of the human JTV-1 gene. Human JTV-1, a gene of unknown function, initiates within the human PMS2 gene promoter, but is transcribed from the opposite strand. PMS2 encodes a protein involved in DNA mismatch repair and is mutated in a subset of patients with hereditary nonpolyposis colon cancer. It is unknown whether the expression of JTV-1 affects that of PMS2, or vice versa, as a result of their juxtaposition. JTV-1 is up-regulated while PMS2 is down-regulated in tumor cell spheroids that show increased resistance to anticancer cytotoxic drugs compared with tumor cell monolayers indicating that suppressed DNA mismatch repair may be a mechanism for multicellular resistance to alkylating agents.
Probab=99.14 E-value=1.4e-10 Score=72.87 Aligned_cols=57 Identities=25% Similarity=0.424 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHHhcCCCCcccCCCcChhhhhHHHHHhHH---hhhChhHHHHHHHhcc
Q 040899 79 MTKEFIAILKTLEEELGDKPHFEGENFGFVDVSLIPLYCWL---ETECPKIIAWAKRCTQ 135 (155)
Q Consensus 79 ~~~~~~~~l~~le~~L~~~~~l~G~~~t~aD~~~~~~l~~~---~~~~p~l~~~~~~~~~ 135 (155)
..+.+.+.++.+|++|++++|++|+++|+||+++++.+.+. ...+|++.+|+++|.+
T Consensus 36 ~~~~~~~~l~~le~~L~~~~fl~Gd~~tiADi~l~~~l~~~~~~~~~~p~l~~w~~r~~~ 95 (96)
T cd03200 36 SSKEKAAVLRALNSALGRSPWLVGSEFTVADIVSWCALLQTGLASAAPANVQRWLKSCEN 95 (96)
T ss_pred CHHHHHHHHHHHHHHHcCCCccCCCCCCHHHHHHHHHHHHcccccccChHHHHHHHHHHh
Confidence 34566688999999999999999999999999999998876 5679999999999975
No 96
>COG2999 GrxB Glutaredoxin 2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.14 E-value=4.5e-10 Score=76.37 Aligned_cols=136 Identities=21% Similarity=0.285 Sum_probs=98.2
Q ss_pred hHHhHHHHhCCCceeEecCCCCCChhhhhcCCCCCccceEE-eCCeeeeehHHHHHHHHHhCcc-------------hHH
Q 040899 2 RVRIALAEKGIEYEYREQNLLNKGPMLLQMNRVHKKVPVLI-HNGKPICESTNIVQYIDEIHTD-------------GRE 67 (155)
Q Consensus 2 r~~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~-~~g~~i~es~aI~~yL~~~~~~-------------~~~ 67 (155)
|+||.+..+|||++.......+-.-. ..+-.. .+||+|+ +||..+.||..|++|+.+..++ |.+
T Consensus 14 rarmi~Gl~nipve~~vL~nDDe~Tp-~rmiG~-KqVPiL~Kedg~~m~ESlDIV~y~d~~~~~~~lt~~~~pai~~wlr 91 (215)
T COG2999 14 RARMIFGLKNIPVELHVLLNDDEETP-IRMIGQ-KQVPILQKEDGRAMPESLDIVHYVDELDGKPLLTGKVRPAIEAWLR 91 (215)
T ss_pred HHHHHhhccCCChhhheeccCcccCh-hhhhcc-cccceEEccccccchhhhHHHHHHHHhcCchhhccCcCHHHHHHHH
Confidence 79999999999999987765432112 223333 5999999 6999999999999999998775 111
Q ss_pred -----------------------------HHhhch-----------HHHHHHHHHHHHHHHHHHHhcCCCCcccCCCcCh
Q 040899 68 -----------------------------MRAVKL-----------ERQEEMTKEFIAILKTLEEELGDKPHFEGENFGF 107 (155)
Q Consensus 68 -----------------------------~~~~~~-----------~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~ 107 (155)
++..++ .......+++...++.++..+.+..-+.| .+|.
T Consensus 92 kv~~y~nkll~PR~~k~~l~EF~T~sA~~yf~~KKe~s~g~F~~~l~~t~~~~~~i~~dl~~l~~Li~~~s~~n~-~l~~ 170 (215)
T COG2999 92 KVNGYLNKLLLPRFAKSALPEFATPSARKYFTDKKEASEGSFESLLNHTAQYLKRIQADLRALDKLIVGPSAVNG-ELSE 170 (215)
T ss_pred HhcchHhhhhhhhHhhcCCccccCHHHHHHHHhhhhhccccHHHHHhchHHHHHHHHHHHHHHHHHhcCcchhcc-ccch
Confidence 111111 12355666778888888888866553444 5899
Q ss_pred hhhhHHHHHhHH-----hhhChhHHHHHHHhcchhhHH
Q 040899 108 VDVSLIPLYCWL-----ETECPKIIAWAKRCTQRKSVS 140 (155)
Q Consensus 108 aD~~~~~~l~~~-----~~~~p~l~~~~~~~~~~~~~~ 140 (155)
-|+.+||.|+.+ ..=..++..|..+|.....+.
T Consensus 171 ddi~vFplLRnlt~v~gi~wps~v~dy~~~msektqV~ 208 (215)
T COG2999 171 DDILVFPLLRNLTLVAGIQWPSRVADYRDNMSEKTQVN 208 (215)
T ss_pred hhhhhhHHhccceecccCCCcHHHHHHHHHHHHhhCcc
Confidence 999999999998 444558999999998765543
No 97
>cd00299 GST_C_family Glutathione S-transferase (GST) family, C-terminal alpha helical domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an activ
Probab=99.11 E-value=3.6e-10 Score=70.55 Aligned_cols=61 Identities=33% Similarity=0.591 Sum_probs=54.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcCCCCcccCCCcChhhhhHHHHHhHH-----h----hhChhHHHHHHHh
Q 040899 73 LERQEEMTKEFIAILKTLEEELGDKPHFEGENFGFVDVSLIPLYCWL-----E----TECPKIIAWAKRC 133 (155)
Q Consensus 73 ~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aD~~~~~~l~~~-----~----~~~p~l~~~~~~~ 133 (155)
+...+...+.+.+.++.+|+.|++++|+.|+++|+||+.+++.+.++ . ..+|++.+|++++
T Consensus 31 ~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~t~aDi~~~~~l~~~~~~~~~~~~~~~~p~l~~~~~~~ 100 (100)
T cd00299 31 EAALEEAREELAAALAALEKLLAGRPYLAGDRFSLADIALAPVLARLDLLGPLLGLLDEYPRLAAWYDRL 100 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCcCHHHHHHHHHHHHHHHhhhhhhhhccCccHHHHHHhC
Confidence 55677788899999999999999999999999999999999999988 2 6689999999875
No 98
>cd03211 GST_C_Metaxin2 GST_C family, Metaxin subfamily, Metaxin 2; a metaxin 1 binding protein identified through a yeast two-hybrid system using metaxin 1 as the bait. Metaxin 2 shares sequence similarity with metaxin 1 but does not contain a C-terminal mitochondrial outer membrane signal-anchor domain. It associates with mitochondrial membranes through its interaction with metaxin 1, which is a component of the mitochondrial preprotein import complex of the outer membrane. The biological function of metaxin 2 is unknown. It is likely that it also plays a role in protein translocation into the mitochondria. However, this has not been experimentally validated. In a recent proteomics study, it has been shown that metaxin 2 is overexpressed in response to lipopolysaccharide-induced liver injury.
Probab=99.06 E-value=8.1e-10 Score=72.77 Aligned_cols=61 Identities=16% Similarity=0.297 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCcccCCCcChhhhhHHHHHhHH-------------hhhChhHHHHHHHhc
Q 040899 74 ERQEEMTKEFIAILKTLEEELGDKPHFEGENFGFVDVSLIPLYCWL-------------ETECPKIIAWAKRCT 134 (155)
Q Consensus 74 ~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aD~~~~~~l~~~-------------~~~~p~l~~~~~~~~ 134 (155)
...++....+.+.++.|+..|++++||+|++||.+|+++++.+..+ .+.||+|.+|++||.
T Consensus 53 ~~~ee~~~~~~~~l~aLs~~Lg~~~~l~Gd~pT~~Da~vf~~la~~~~~~~~~~~l~~~~~~~pnL~~y~~Ri~ 126 (126)
T cd03211 53 KTLDQVIEEVDQCCQALSQRLGTQPYFFGDQPTELDALVFGHLFTILTTQLPNDELAEKVKKYSNLLAFCRRIE 126 (126)
T ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCcHHHHHHHHHHHHHHhcCCCChHHHHHHHhCcHHHHHHHhcC
Confidence 3567788889999999999999999999999999999999887665 567888888888873
No 99
>cd03192 GST_C_Sigma_like GST_C family, Class Sigma_like; composed of GSTs belonging to class Sigma and similar proteins, including GSTs from class Mu, Pi, and Alpha. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Vertebrate class Sigma GSTs are characterized as GSH-dependent hematopoietic prostaglandin (PG) D synthases and are responsible for the production of PGD2 by catalyzing the isomerization of PGH2. The functions of PGD2 include the maintenance of body temperature, inhibition
Probab=99.02 E-value=9.7e-10 Score=69.65 Aligned_cols=61 Identities=21% Similarity=0.348 Sum_probs=52.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcCC--CCcccCCCcChhhhhHHHHHhHH--------hhhChhHHHHHHHh
Q 040899 73 LERQEEMTKEFIAILKTLEEELGD--KPHFEGENFGFVDVSLIPLYCWL--------ETECPKIIAWAKRC 133 (155)
Q Consensus 73 ~~~~~~~~~~~~~~l~~le~~L~~--~~~l~G~~~t~aD~~~~~~l~~~--------~~~~p~l~~~~~~~ 133 (155)
+.......+.+.+.++.+|+.|.+ ++|++|+++|+||+++++.+.++ ...+|++.+|++++
T Consensus 34 ~~~~~~~~~~~~~~l~~le~~l~~~~~~~~~G~~~s~aDi~l~~~~~~~~~~~~~~~~~~~p~l~~~~~~~ 104 (104)
T cd03192 34 EKKKEFLKEAIPKYLKKLEKILKENGGGYLVGDKLTWADLVVFDVLDYLLYLDPKLLLKKYPKLKALRERV 104 (104)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHcCCCeeeCCCccHHHHHHHHHHHHHHhhCchhhHHhChhHHHHHHhC
Confidence 455677788899999999999976 89999999999999999999887 24689999998875
No 100
>cd03212 GST_C_Metaxin1_3 GST_C family, Metaxin subfamily, Metaxin 1-like proteins; composed of metaxins 1 and 3, and similar proteins. Mammalian metaxin (or metaxin 1) is a component of the preprotein import complex of the mitochondrial outer membrane. Metaxin extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. Like the murine gene, the human metaxin gene is located downstream to the glucocerebrosidase (GBA) pseudogene and is convergently transcribed. Inherited deficiency of GBA results in Gaucher disease, which presents many diverse clinical phenotypes. Alterations in the metaxin gene, in addition to GBA mutations, may be associated with Gaucher disease. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken, and mammals.
Probab=98.97 E-value=3e-09 Score=71.02 Aligned_cols=62 Identities=21% Similarity=0.366 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCcccCCCcChhhhhHHHHHhHH-------------hhhChhHHHHHHHhcc
Q 040899 74 ERQEEMTKEFIAILKTLEEELGDKPHFEGENFGFVDVSLIPLYCWL-------------ETECPKIIAWAKRCTQ 135 (155)
Q Consensus 74 ~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aD~~~~~~l~~~-------------~~~~p~l~~~~~~~~~ 135 (155)
...++..+...+.++.+++.|++++|++|+++|.+|+.+++.+..+ ...+|+|.+|++||.+
T Consensus 60 ~~~~~~~~~a~~~l~~l~~~L~~~~~~~Gd~~t~~D~~~~~~l~~~~~~~~~~~~l~~~~~~~pnL~~~~~ri~~ 134 (137)
T cd03212 60 EVEAEIYRDAKECLNLLSQRLGESQFFFGDTPTSLDALVFGYLAPLLKAPLPNNKLQNHLKQCPNLCRFCDRILS 134 (137)
T ss_pred hhHHHHHHHHHHHHHHHHHHHCCCCcCCCCCCcHHHHHHHHHHHHHHhccCCChHHHHHHHHCcHHHHHHHHHHH
Confidence 3467777888999999999999999999999999999998887655 5678999999999874
No 101
>cd03205 GST_C_6 GST_C family, unknown subfamily 6; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=98.88 E-value=9.8e-09 Score=64.48 Aligned_cols=58 Identities=22% Similarity=0.369 Sum_probs=51.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcCCCCcccCCCcChhhhhHHHHHhHH---------hhhChhHHHHHHHh
Q 040899 73 LERQEEMTKEFIAILKTLEEELGDKPHFEGENFGFVDVSLIPLYCWL---------ETECPKIIAWAKRC 133 (155)
Q Consensus 73 ~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aD~~~~~~l~~~---------~~~~p~l~~~~~~~ 133 (155)
+...+...+.+.+.++.+|++|++++| +++|+||+++++.+.+. ..++|+|.+|+++|
T Consensus 32 ~~~~~~~~~~~~~~l~~le~~L~~~~~---d~~TlADi~l~~~l~~~~~~~~~~~~~~~~p~l~~w~~rm 98 (98)
T cd03205 32 QPWLERQRGKIERALDALEAELAKLPL---DPLDLADIAVACALGYLDFRHPDLDWRAAHPALAAWYARF 98 (98)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhhCCC---CCCCHHHHHHHHHHHHHHhHccCcchhhhChHHHHHHHhC
Confidence 566888899999999999999988888 88999999999998766 37899999999886
No 102
>KOG3028 consensus Translocase of outer mitochondrial membrane complex, subunit TOM37/Metaxin 1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.77 E-value=3.8e-07 Score=67.38 Aligned_cols=126 Identities=21% Similarity=0.261 Sum_probs=93.7
Q ss_pred hHHhHHHHhCCCceeEecCCCCCChhhhhcCCCCCccceEEe-CCeeeeehHHHHHHHHHh---Ccc-------------
Q 040899 2 RVRIALAEKGIEYEYREQNLLNKGPMLLQMNRVHKKVPVLIH-NGKPICESTNIVQYIDEI---HTD------------- 64 (155)
Q Consensus 2 r~~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~~-~g~~i~es~aI~~yL~~~---~~~------------- 64 (155)
.+.++++.++-|.++...+. ++ .+|. |++|+|+. +|..+..-..|..+|... +.-
T Consensus 22 ~~l~y~kl~~~~l~v~~ssN----~~---~s~s-g~LP~l~~~ng~~va~~~~iv~~L~k~~~ky~~d~dl~~kq~a~~~ 93 (313)
T KOG3028|consen 22 AALIYLKLAGAPLKVVVSSN----PW---RSPS-GKLPYLITDNGTKVAGPVKIVQFLKKNTKKYNLDADLSAKQLADTL 93 (313)
T ss_pred HHHHHHHHhCCCceeEeecC----CC---CCCC-CCCCeEEecCCceeccHHHHHHHHHHhcccCCcCccHHHHHHHHHH
Confidence 46677888886666655542 22 4576 89999996 779999999999999873 211
Q ss_pred ------------------h----------HHHH---------------------------hh-chHHHHHHHHHHHHHHH
Q 040899 65 ------------------G----------REMR---------------------------AV-KLERQEEMTKEFIAILK 88 (155)
Q Consensus 65 ------------------~----------~~~~---------------------------~~-~~~~~~~~~~~~~~~l~ 88 (155)
| .+++ .+ .....++......+.+.
T Consensus 94 a~~sll~~~l~~a~~~t~~v~~~Ny~e~Tkk~yak~l~fP~n~~~p~~l~~qAk~rl~l~~g~~~~~e~~i~~~Aska~~ 173 (313)
T KOG3028|consen 94 AFMSLLEENLEPALLYTFWVDTENYNEVTKKWYAKALPFPLNYILPGKLQRQAKERLQLTLGELTEREDQIYKDASKALN 173 (313)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccchhhHhHHHHHhcCCCchhhcchhhhHHHHHHHHHHHhCCchhhHHHHHHHHHHHHH
Confidence 0 0000 00 12235556667788999
Q ss_pred HHHHhcCCCCcccCCCcChhhhhHHHHHhHH-------------hhhChhHHHHHHHhcc
Q 040899 89 TLEEELGDKPHFEGENFGFVDVSLIPLYCWL-------------ETECPKIIAWAKRCTQ 135 (155)
Q Consensus 89 ~le~~L~~~~~l~G~~~t~aD~~~~~~l~~~-------------~~~~p~l~~~~~~~~~ 135 (155)
.+++.|+++.|++|+.||--|..++..+..+ ...+++|.++++++..
T Consensus 174 ~LS~~Lgs~kffFgd~psslDa~lfs~la~~~~~~Lp~~~Lq~~l~~~~NL~~~~~~i~s 233 (313)
T KOG3028|consen 174 LLSTLLGSKKFFFGDKPSSLDALLFSYLAILLQVALPNDSLQVHLLAHKNLVRYVERIRS 233 (313)
T ss_pred HHHHHhcCceEeeCCCCchHHHHHHHHHHHHHhccCCchhHHHHHHhcchHHHHHHHHHH
Confidence 9999999999999999999999999999985 5559999999999876
No 103
>cd03197 GST_C_mPGES2 GST_C family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH, or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature, and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated and a C-terminal soluble domain with a GST-like structure. The C-terminus contains two structural domains a N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. The GST active site is located in a cleft between t
Probab=98.77 E-value=2.5e-08 Score=66.94 Aligned_cols=58 Identities=19% Similarity=0.259 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHHHhc-CCCCcccCCCcChhhhhHHHHHhHH--------hhhChhHHHHHHHhcc
Q 040899 78 EMTKEFIAILKTLEEEL-GDKPHFEGENFGFVDVSLIPLYCWL--------ETECPKIIAWAKRCTQ 135 (155)
Q Consensus 78 ~~~~~~~~~l~~le~~L-~~~~~l~G~~~t~aD~~~~~~l~~~--------~~~~p~l~~~~~~~~~ 135 (155)
...+.+...++.+=+.+ ++++|+.|++||+||+++++.+..+ +..+|+|.+|+++|.+
T Consensus 79 D~r~~L~~a~~~w~~~~~~~~~FlaGd~ptIADisvyg~l~s~e~~~~~~Dl~~~p~I~~W~eRm~~ 145 (149)
T cd03197 79 DVREWLYDALNTWVAALGKDRQFHGGSKPNLADLAVYGVLRSVEGHPAFKDMVEETKIGEWYERMDA 145 (149)
T ss_pred hHHHHHHHHHHHHHHHhcCCCCccCCCCCCHHHHHHHHHHHHHHHhccccchhhCcCHHHHHHHHHH
Confidence 34555555555444444 5578999999999999999999887 5679999999999976
No 104
>PF14834 GST_C_4: Glutathione S-transferase, C-terminal domain; PDB: 3BBY_A.
Probab=98.53 E-value=6.4e-07 Score=57.06 Aligned_cols=72 Identities=24% Similarity=0.270 Sum_probs=54.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcCC-CCcccCCCcChhhhhHHHHHhHH----hhhChhHHHHHHHhcchhhHHhhcch
Q 040899 73 LERQEEMTKEFIAILKTLEEELGD-KPHFEGENFGFVDVSLIPLYCWL----ETECPKIIAWAKRCTQRKSVSKSLKD 145 (155)
Q Consensus 73 ~~~~~~~~~~~~~~l~~le~~L~~-~~~l~G~~~t~aD~~~~~~l~~~----~~~~p~l~~~~~~~~~~~~~~~~~~~ 145 (155)
....+.....+.+++...+..|.. ++||+|+ +|+||..+++++.++ .+..+.+..|.++.-++|++++++.-
T Consensus 38 ~pLs~~a~~~a~kL~~~a~~ll~~g~~~LFGe-wsIAD~dlA~ml~Rl~~~gd~vP~~l~~Ya~~qwqrpsVQ~Wla~ 114 (117)
T PF14834_consen 38 PPLSEAAQAAAQKLIAVAERLLADGGPNLFGE-WSIADADLALMLNRLVTYGDPVPERLADYAERQWQRPSVQRWLAL 114 (117)
T ss_dssp ----HHHHHHHHHHHHHHHHHTTT--SSTTSS---HHHHHHHHHHHHHHTTT----HHHHHHHHHHHT-HHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhccCCCCcccc-chHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHCCHHHHHHHHH
Confidence 345677778888899999998855 6899997 999999999999999 56677899999999999999998763
No 105
>cd03078 GST_N_Metaxin1_like GST_N family, Metaxin subfamily, Metaxin 1-like proteins; composed of metaxins 1 and 3, and similar proteins including Tom37 from fungi. Mammalian metaxin (or metaxin 1) and the fungal protein Tom37 are components of preprotein import complexes of the mitochondrial outer membrane. Metaxin extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. Like the murine gene, the human metaxin gene is located downstream to the glucocerebrosidase (GBA) pseudogene and is convergently transcribed. Inherited deficiency of GBA results in Gaucher disease, which presents many diverse clinical phenotypes. Alterations in the metaxin gene, in addition to GBA mutations, may be associated with Gaucher disease. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals.
Probab=98.53 E-value=3.5e-07 Score=54.45 Aligned_cols=52 Identities=21% Similarity=0.271 Sum_probs=43.9
Q ss_pred hHHhHHHHhCCCceeEecCCCCCChhhhhcCCCCCccceEEeCCeeeeehHHHHHHHHHh
Q 040899 2 RVRIALAEKGIEYEYREQNLLNKGPMLLQMNRVHKKVPVLIHNGKPICESTNIVQYIDEI 61 (155)
Q Consensus 2 r~~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~~~g~~i~es~aI~~yL~~~ 61 (155)
|+.++|..+|++|+.+..+. ...+|. |++|+|+++|..+.||..|++||.+.
T Consensus 21 k~~~~Lr~~~~~~~v~~~~n-------~~~sp~-gkLP~l~~~~~~i~d~~~Ii~~L~~~ 72 (73)
T cd03078 21 AVLAYLKFAGAPLKVVPSNN-------PWRSPT-GKLPALLTSGTKISGPEKIIEYLRKQ 72 (73)
T ss_pred HHHHHHHcCCCCEEEEecCC-------CCCCCC-CccCEEEECCEEecChHHHHHHHHHc
Confidence 67889999999999875442 135687 99999999999999999999999864
No 106
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=98.30 E-value=1.5e-06 Score=52.41 Aligned_cols=58 Identities=24% Similarity=0.355 Sum_probs=48.6
Q ss_pred ChHHhHHHHhCCCceeEecCCCCCChhhhhcCCCCCccceEEeCCeeeeehHHHHHHHH
Q 040899 1 MRVRIALAEKGIEYEYREQNLLNKGPMLLQMNRVHKKVPVLIHNGKPICESTNIVQYID 59 (155)
Q Consensus 1 ~r~~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~~~g~~i~es~aI~~yL~ 59 (155)
++++.+|...|++|+.+.++-.....++...++. ..+|++..+|..+.++..|.+||+
T Consensus 22 ~~ak~~L~~~gi~y~~idi~~~~~~~~~~~~~g~-~~vP~i~i~g~~igG~~~l~~~l~ 79 (79)
T TIGR02190 22 AKAKATLKEKGYDFEEIPLGNDARGRSLRAVTGA-TTVPQVFIGGKLIGGSDELEAYLA 79 (79)
T ss_pred HHHHHHHHHcCCCcEEEECCCChHHHHHHHHHCC-CCcCeEEECCEEEcCHHHHHHHhC
Confidence 3788999999999999888755444566666776 799999999999999999999984
No 107
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=98.00 E-value=2.5e-05 Score=46.03 Aligned_cols=57 Identities=28% Similarity=0.376 Sum_probs=46.4
Q ss_pred hHHhHHHHhCCCceeEecCCCCCChhhhhcCCCCCccceEEeCCeeeeehHHHHHHHH
Q 040899 2 RVRIALAEKGIEYEYREQNLLNKGPMLLQMNRVHKKVPVLIHNGKPICESTNIVQYID 59 (155)
Q Consensus 2 r~~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~~~g~~i~es~aI~~yL~ 59 (155)
+++-+|...|++|+.+.++.......+...... .++|.+..||..+.++..|.+||+
T Consensus 16 ~ak~~L~~~~i~~~~~~v~~~~~~~~~~~~~g~-~~vP~ifi~g~~igg~~~l~~~l~ 72 (72)
T cd03029 16 RAKAALQENGISYEEIPLGKDITGRSLRAVTGA-MTVPQVFIDGELIGGSDDLEKYFA 72 (72)
T ss_pred HHHHHHHHcCCCcEEEECCCChhHHHHHHHhCC-CCcCeEEECCEEEeCHHHHHHHhC
Confidence 688999999999999988754433445555565 699999999999999999999974
No 108
>PRK10638 glutaredoxin 3; Provisional
Probab=97.98 E-value=1.8e-05 Score=48.09 Aligned_cols=58 Identities=14% Similarity=0.188 Sum_probs=48.9
Q ss_pred ChHHhHHHHhCCCceeEecCCCC-CChhhhhcCCCCCccceEEeCCeeeeehHHHHHHHH
Q 040899 1 MRVRIALAEKGIEYEYREQNLLN-KGPMLLQMNRVHKKVPVLIHNGKPICESTNIVQYID 59 (155)
Q Consensus 1 ~r~~~~l~~~gi~~~~~~v~~~~-~~~~~~~~~p~~~~vP~l~~~g~~i~es~aI~~yL~ 59 (155)
+|++.+|...|++|+.+.++... ..+++.+.++. +++|++..+|..+.....+..+-.
T Consensus 16 ~~a~~~L~~~gi~y~~~dv~~~~~~~~~l~~~~g~-~~vP~i~~~g~~igG~~~~~~~~~ 74 (83)
T PRK10638 16 HRAKALLNSKGVSFQEIPIDGDAAKREEMIKRSGR-TTVPQIFIDAQHIGGCDDLYALDA 74 (83)
T ss_pred HHHHHHHHHcCCCcEEEECCCCHHHHHHHHHHhCC-CCcCEEEECCEEEeCHHHHHHHHH
Confidence 47899999999999999997653 55778889997 899999999999999888776643
No 109
>PF04399 Glutaredoxin2_C: Glutaredoxin 2, C terminal domain; InterPro: IPR007494 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. Unlike other glutaredoxins, glutaredoxin 2 (Grx2) cannot reduce ribonucleotide reductase. Grx2 has significantly higher catalytic activity in the reduction of mixed disulphides with glutathione (GSH) compared with other glutaredoxins. The active site residues (Cys9-Pro10-Tyr11-Cys12, in Escherichia coli Grx2, P39811 from SWISSPROT), which are found at the interface between the N- and C-terminal domains are identical to other glutaredoxins, but there is no other similarity between glutaredoxin 2 and other glutaredoxins. Grx2 is structurally similar to glutathione-S-transferases (GST), but there is no obvious sequence similarity. The inter-domain contacts are mainly hydrophobic, suggesting that the two domains are unlikely to be stable on their own. Both domains are needed for correct folding and activity of Grx2. It is thought that the primary function of Grx2 is to catalyse reversible glutathionylation of proteins with GSH in cellular redox regulation including the response to oxidative stress. The N-terminal domain is IPR004045 from INTERPRO.; PDB: 1G7O_A 3IR4_A.
Probab=97.80 E-value=0.00025 Score=46.90 Aligned_cols=65 Identities=26% Similarity=0.351 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCcccCCCcChhhhhHHHHHhHH-----hhhChhHHHHHHHhcchhhHH
Q 040899 75 RQEEMTKEFIAILKTLEEELGDKPHFEGENFGFVDVSLIPLYCWL-----ETECPKIIAWAKRCTQRKSVS 140 (155)
Q Consensus 75 ~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aD~~~~~~l~~~-----~~~~p~l~~~~~~~~~~~~~~ 140 (155)
...+...++...|..+|..+.......| ++|+.|+.+|+.|+.+ ..=.|+|.+|+++|.+...+.
T Consensus 56 ~t~~~i~~l~~~L~~Le~ll~~~~~~n~-~LS~dDi~lFp~LR~Ltivkgi~~P~~V~~Y~~~~s~~t~V~ 125 (132)
T PF04399_consen 56 KTPELIAELNADLEELEPLLASPNAVNG-ELSIDDIILFPILRSLTIVKGIQWPPKVRAYMDRMSKATGVP 125 (132)
T ss_dssp CHHHHHHHHHHHHHHHHHH-SCTTBTTS-S--HHHHHHHHHHHHHCTCTTS---HHHHHHHHHHHHHHT--
T ss_pred cCHHHHHHHHHHHHHHHHHhccccccCC-CCCHHHHHHHHHHhhhhhccCCcCCHHHHHHHHHHHHHcCCC
Confidence 3456777888889999998886666666 8999999999999999 556779999999999876654
No 110
>PF10568 Tom37: Outer mitochondrial membrane transport complex protein; InterPro: IPR019564 Tom37 is one of the outer membrane proteins that make up the TOM complex for guiding cytosolic mitochondrial beta-barrel proteins from the cytosol across the outer mitochondrial membrane into the intramembrane space. In conjunction with Tom70, it guides peptides without an mitochondrial targeting sequence (MTS) into Tom40, the protein that forms the passage through the outer membrane []. It has homology with metaxin, also part of the outer mitochondrial membrane beta-barrel protein transport complex []. This entry represents outer mitochondrial membrane transport complex proteins Tom37 and metaxin.; GO: 0006626 protein targeting to mitochondrion, 0005741 mitochondrial outer membrane
Probab=97.62 E-value=0.00025 Score=41.97 Aligned_cols=49 Identities=27% Similarity=0.385 Sum_probs=41.3
Q ss_pred hHHhHHHHhCCC---ceeEecCCCCCChhhhhcCCCCCccceEEe-CCeeeeehHHHHHHH
Q 040899 2 RVRIALAEKGIE---YEYREQNLLNKGPMLLQMNRVHKKVPVLIH-NGKPICESTNIVQYI 58 (155)
Q Consensus 2 r~~~~l~~~gi~---~~~~~v~~~~~~~~~~~~~p~~~~vP~l~~-~g~~i~es~aI~~yL 58 (155)
.+.++|...+.+ |+++..+- + ..+|. |++|+|.+ ++..+.+-..|++||
T Consensus 19 a~~~yl~~~~~~~~~~~vv~s~n----~---~~Spt-g~LP~L~~~~~~~vsg~~~Iv~yL 71 (72)
T PF10568_consen 19 AVIAYLKFAGAPEQQFKVVPSNN----P---WLSPT-GELPALIDSGGTWVSGFRNIVEYL 71 (72)
T ss_pred HHHHHHHhCCCCCceEEEEEcCC----C---CcCCC-CCCCEEEECCCcEEECHHHHHHhh
Confidence 467889999999 88877663 2 26787 99999999 899999999999998
No 111
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=97.49 E-value=0.00023 Score=41.97 Aligned_cols=54 Identities=24% Similarity=0.330 Sum_probs=44.0
Q ss_pred ChHHhHHHHhCCCceeEecCCC-CCChhhhhcCCCCCccceEEeCCeeeeehHHHH
Q 040899 1 MRVRIALAEKGIEYEYREQNLL-NKGPMLLQMNRVHKKVPVLIHNGKPICESTNIV 55 (155)
Q Consensus 1 ~r~~~~l~~~gi~~~~~~v~~~-~~~~~~~~~~p~~~~vP~l~~~g~~i~es~aI~ 55 (155)
+|++.+|...||+|+.+.++.. ...+++.+.++. ..+|.+..+|..+.......
T Consensus 15 ~ka~~~L~~~gi~~~~~di~~~~~~~~el~~~~g~-~~vP~v~i~~~~iGg~~~~~ 69 (73)
T cd03027 15 TAVRLFLREKGLPYVEINIDIFPERKAELEERTGS-SVVPQIFFNEKLVGGLTDLK 69 (73)
T ss_pred HHHHHHHHHCCCceEEEECCCCHHHHHHHHHHhCC-CCcCEEEECCEEEeCHHHHH
Confidence 4789999999999999988754 345678888897 89999999998887665544
No 112
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=97.44 E-value=0.00034 Score=40.40 Aligned_cols=56 Identities=21% Similarity=0.197 Sum_probs=45.7
Q ss_pred ChHHhHHHHhCCCceeEecCCCC-CChhhhhcCCCCCccceEEeCCeeeeehHHHHHH
Q 040899 1 MRVRIALAEKGIEYEYREQNLLN-KGPMLLQMNRVHKKVPVLIHNGKPICESTNIVQY 57 (155)
Q Consensus 1 ~r~~~~l~~~gi~~~~~~v~~~~-~~~~~~~~~p~~~~vP~l~~~g~~i~es~aI~~y 57 (155)
++++.+|...|++|+...++... ...++.+.++. .++|++..+|..+.++..|.+.
T Consensus 14 ~~~~~~L~~~~i~~~~~di~~~~~~~~~l~~~~~~-~~~P~~~~~~~~igg~~~~~~~ 70 (72)
T cd02066 14 KRAKRLLESLGIEFEEIDILEDGELREELKELSGW-PTVPQIFINGEFIGGYDDLKAL 70 (72)
T ss_pred HHHHHHHHHcCCcEEEEECCCCHHHHHHHHHHhCC-CCcCEEEECCEEEecHHHHHHh
Confidence 36889999999999988776543 45677778887 8999999999999999887653
No 113
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=97.40 E-value=0.00025 Score=41.21 Aligned_cols=49 Identities=20% Similarity=0.270 Sum_probs=39.4
Q ss_pred hHHhHHHHhCCCceeEecCCC-CCChhhhhcCCCCCccceEEeCCeeeeeh
Q 040899 2 RVRIALAEKGIEYEYREQNLL-NKGPMLLQMNRVHKKVPVLIHNGKPICES 51 (155)
Q Consensus 2 r~~~~l~~~gi~~~~~~v~~~-~~~~~~~~~~p~~~~vP~l~~~g~~i~es 51 (155)
+++.+|.+.|++|..+.++.. +..+++.+.+|. +.+|+|+++|..+.+.
T Consensus 15 ~~~~~l~~~~i~~~~~~i~~~~~~~~~~~~~~~~-~~vP~i~~~~~~i~g~ 64 (73)
T cd02976 15 ATKRFLDERGIPFEEVDVDEDPEALEELKKLNGY-RSVPVVVIGDEHLSGF 64 (73)
T ss_pred HHHHHHHHCCCCeEEEeCCCCHHHHHHHHHHcCC-cccCEEEECCEEEecC
Confidence 678899999999999888754 344577788897 8999999988776554
No 114
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=97.22 E-value=0.00074 Score=39.21 Aligned_cols=56 Identities=21% Similarity=0.305 Sum_probs=40.9
Q ss_pred hHHhHHHHhCCCceeEecCCCC-CChhhhhcCCCCCccceEEeCCeee--eehHHHHHHH
Q 040899 2 RVRIALAEKGIEYEYREQNLLN-KGPMLLQMNRVHKKVPVLIHNGKPI--CESTNIVQYI 58 (155)
Q Consensus 2 r~~~~l~~~gi~~~~~~v~~~~-~~~~~~~~~p~~~~vP~l~~~g~~i--~es~aI~~yL 58 (155)
+++.+|...|++|..+.++-.. ..+++.+.++. ..+|+++.+|..+ .++..|.++|
T Consensus 15 ~~~~~l~~~~i~~~~vdi~~~~~~~~~~~~~~~~-~~vP~~~~~~~~~~g~~~~~i~~~i 73 (74)
T TIGR02196 15 KAKEYLTSKGIAFEEIDVEKDSAAREEVLKVLGQ-RGVPVIVIGHKIIVGFDPEKLDQLL 73 (74)
T ss_pred HHHHHHHHCCCeEEEEeccCCHHHHHHHHHHhCC-CcccEEEECCEEEeeCCHHHHHHHh
Confidence 5677899999999887776432 23456677887 7999999888777 5566666554
No 115
>cd03199 GST_C_GRX2 GST_C family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD (most GRXs range from 9-12kD). GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain, but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=97.15 E-value=0.0019 Score=42.42 Aligned_cols=62 Identities=19% Similarity=0.222 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCcccCCCcChhhhhHHHHHhHH-----hhhChhHHHHHHHhcchhhH
Q 040899 77 EEMTKEFIAILKTLEEELGDKPHFEGENFGFVDVSLIPLYCWL-----ETECPKIIAWAKRCTQRKSV 139 (155)
Q Consensus 77 ~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aD~~~~~~l~~~-----~~~~p~l~~~~~~~~~~~~~ 139 (155)
....+++...|..++..+..... .++++|+.|+.+||.|+.+ ..=.|+|.+|+++|.+...+
T Consensus 59 ~~~i~~l~~~L~~l~~ll~~~~~-~n~~ls~DDi~lFp~LR~Lt~vkgi~~P~~V~~Y~~~~s~~t~V 125 (128)
T cd03199 59 PQYIAALNALLEELDPLILSSEA-VNGQLSTDDIILFPILRNLTLVKGLVFPPKVKAYLERMSALTKV 125 (128)
T ss_pred HHHHHHHHHHHHHHHHHHcCccc-cCCcCCHHHHHHHHHHhhhhhhcCCCCCHHHHHHHHHHHHHhCC
Confidence 35667778888888888854444 4557999999999999998 54567999999999887654
No 116
>PRK10329 glutaredoxin-like protein; Provisional
Probab=97.00 E-value=0.0016 Score=39.32 Aligned_cols=47 Identities=15% Similarity=0.334 Sum_probs=34.2
Q ss_pred hHHhHHHHhCCCceeEecCCCCCChhhhhcCCCCCccceEEeCCeeee
Q 040899 2 RVRIALAEKGIEYEYREQNLLNKGPMLLQMNRVHKKVPVLIHNGKPIC 49 (155)
Q Consensus 2 r~~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~~~g~~i~ 49 (155)
+++-+|..+||+|+.+.++-.....+....++. .+||+++.++..+.
T Consensus 16 ~ak~~L~~~gI~~~~idi~~~~~~~~~~~~~g~-~~vPvv~i~~~~~~ 62 (81)
T PRK10329 16 ATKRAMESRGFDFEMINVDRVPEAAETLRAQGF-RQLPVVIAGDLSWS 62 (81)
T ss_pred HHHHHHHHCCCceEEEECCCCHHHHHHHHHcCC-CCcCEEEECCEEEe
Confidence 678899999999999988754322222334676 79999998776554
No 117
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=96.95 E-value=0.0027 Score=37.31 Aligned_cols=58 Identities=16% Similarity=0.213 Sum_probs=42.8
Q ss_pred hHHhHHHHhCCCceeEecCCC-CCChhhhhcCCCCCccceEEeCCeeeeehHHHHHHHH
Q 040899 2 RVRIALAEKGIEYEYREQNLL-NKGPMLLQMNRVHKKVPVLIHNGKPICESTNIVQYID 59 (155)
Q Consensus 2 r~~~~l~~~gi~~~~~~v~~~-~~~~~~~~~~p~~~~vP~l~~~g~~i~es~aI~~yL~ 59 (155)
+++-+|...|++|+.+.++.. +...++.+.......+|++..+|..+.+...+.++-.
T Consensus 15 ~ak~~L~~~~i~~~~i~i~~~~~~~~~~~~~~~~~~~vP~v~i~g~~igg~~~~~~~~~ 73 (75)
T cd03418 15 RAKALLDKKGVDYEEIDVDGDPALREEMINRSGGRRTVPQIFIGDVHIGGCDDLYALER 73 (75)
T ss_pred HHHHHHHHCCCcEEEEECCCCHHHHHHHHHHhCCCCccCEEEECCEEEeChHHHHHHHh
Confidence 678899999999999988754 2223444444431389999999999999888877643
No 118
>KOG1147 consensus Glutamyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=96.83 E-value=0.0014 Score=52.40 Aligned_cols=66 Identities=14% Similarity=0.170 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHHhcCCCCcccCCCcChhhhhHHHHHhHH---------hhhChhHHHHHHHhcchhhHHhhcch
Q 040899 80 TKEFIAILKTLEEELGDKPHFEGENFGFVDVSLIPLYCWL---------ETECPKIIAWAKRCTQRKSVSKSLKD 145 (155)
Q Consensus 80 ~~~~~~~l~~le~~L~~~~~l~G~~~t~aD~~~~~~l~~~---------~~~~p~l~~~~~~~~~~~~~~~~~~~ 145 (155)
...+...+..+++.|.-..||+|.++|+||+++|..++.- ...+.++.+|++-....++.+.+..+
T Consensus 90 ~~~~s~~~~~ld~~l~~~t~lvg~sls~Ad~aiw~~l~~n~~~~~~lk~~k~~~~v~Rw~~~~~~~~a~~~v~~t 164 (712)
T KOG1147|consen 90 FDEISSSLSELDKFLVLRTFLVGNSLSIADFAIWGALHSNGMRQEQLKAKKDYQNVERWYDLPEFQEAHNKVLAT 164 (712)
T ss_pred hHHHHHHHHHHHhhhhHHHHhhccchhHHHHHHHHHHhcccchHHHHHhhCCchhhhhhcCcHhHHHHHHHHHHH
Confidence 5567788888999998899999999999999999999863 34788999999955555555555533
No 119
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=96.83 E-value=0.0039 Score=37.14 Aligned_cols=58 Identities=14% Similarity=0.173 Sum_probs=45.1
Q ss_pred hHHhHHHHhCCCceeEecCCC-CCChhhhhcCCCCCccceEEeCCeeeeehHHHHHHHHH
Q 040899 2 RVRIALAEKGIEYEYREQNLL-NKGPMLLQMNRVHKKVPVLIHNGKPICESTNIVQYIDE 60 (155)
Q Consensus 2 r~~~~l~~~gi~~~~~~v~~~-~~~~~~~~~~p~~~~vP~l~~~g~~i~es~aI~~yL~~ 60 (155)
+++-+|...|++|+.+.++.. ...+++.+.... ..+|.+..+|..+.+...+..+-.+
T Consensus 14 ~a~~~L~~~~i~~~~~di~~~~~~~~~~~~~~g~-~~vP~i~i~g~~igg~~~~~~~~~~ 72 (79)
T TIGR02181 14 RAKALLSSKGVTFTEIRVDGDPALRDEMMQRSGR-RTVPQIFIGDVHVGGCDDLYALDRE 72 (79)
T ss_pred HHHHHHHHcCCCcEEEEecCCHHHHHHHHHHhCC-CCcCEEEECCEEEcChHHHHHHHHc
Confidence 678899999999999988754 234556666665 7899999999999888887766543
No 120
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=96.40 E-value=0.0085 Score=35.13 Aligned_cols=57 Identities=14% Similarity=0.247 Sum_probs=39.1
Q ss_pred ChHHhHHHHhCCCceeEecCCCC-CChhhhhcC-CCCCccceEEe-CCeeeeeh--HHHHHHH
Q 040899 1 MRVRIALAEKGIEYEYREQNLLN-KGPMLLQMN-RVHKKVPVLIH-NGKPICES--TNIVQYI 58 (155)
Q Consensus 1 ~r~~~~l~~~gi~~~~~~v~~~~-~~~~~~~~~-p~~~~vP~l~~-~g~~i~es--~aI~~yL 58 (155)
++++.+|...|++|+.+.++-.. ....+.+.+ +. ..+|+++. +|..+.++ .-+..+|
T Consensus 14 ~~~~~~L~~~~~~~~~idi~~~~~~~~~~~~~~~~~-~~vP~i~~~~g~~l~~~~~~~~~~~l 75 (77)
T TIGR02200 14 AQLMRTLDKLGAAYEWVDIEEDEGAADRVVSVNNGN-MTVPTVKFADGSFLTNPSAAQVKAKL 75 (77)
T ss_pred HHHHHHHHHcCCceEEEeCcCCHhHHHHHHHHhCCC-ceeCEEEECCCeEecCCCHHHHHHHh
Confidence 36788999999999987765432 334555666 76 79999974 77776655 3344443
No 121
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=96.19 E-value=0.0084 Score=35.13 Aligned_cols=44 Identities=23% Similarity=0.336 Sum_probs=31.8
Q ss_pred ChHHhHHHHhCCCceeEecCCCC-CChhhhhcCCCCCccceEEeCCe
Q 040899 1 MRVRIALAEKGIEYEYREQNLLN-KGPMLLQMNRVHKKVPVLIHNGK 46 (155)
Q Consensus 1 ~r~~~~l~~~gi~~~~~~v~~~~-~~~~~~~~~p~~~~vP~l~~~g~ 46 (155)
++++-+|...|++|+.+.++-.. ...++. ..+. ..||+++.+|.
T Consensus 13 ~~ak~~L~~~~i~~~~~di~~~~~~~~~~~-~~g~-~~vP~v~~~g~ 57 (72)
T TIGR02194 13 KMTKKALEEHGIAFEEINIDEQPEAIDYVK-AQGF-RQVPVIVADGD 57 (72)
T ss_pred HHHHHHHHHCCCceEEEECCCCHHHHHHHH-HcCC-cccCEEEECCC
Confidence 36888999999999999887543 223333 3454 68999998654
No 122
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=96.17 E-value=0.0053 Score=34.57 Aligned_cols=46 Identities=30% Similarity=0.408 Sum_probs=36.4
Q ss_pred hHHhHHHHhCCCceeEecCCC-CCChhhhhcCCCCCccceEEeCCeee
Q 040899 2 RVRIALAEKGIEYEYREQNLL-NKGPMLLQMNRVHKKVPVLIHNGKPI 48 (155)
Q Consensus 2 r~~~~l~~~gi~~~~~~v~~~-~~~~~~~~~~p~~~~vP~l~~~g~~i 48 (155)
+++-+|...|++|+...++.. ...+++.+.... ..+|.+..||..|
T Consensus 14 ~~~~~L~~~~i~y~~~dv~~~~~~~~~l~~~~g~-~~~P~v~i~g~~I 60 (60)
T PF00462_consen 14 KAKEFLDEKGIPYEEVDVDEDEEAREELKELSGV-RTVPQVFIDGKFI 60 (60)
T ss_dssp HHHHHHHHTTBEEEEEEGGGSHHHHHHHHHHHSS-SSSSEEEETTEEE
T ss_pred HHHHHHHHcCCeeeEcccccchhHHHHHHHHcCC-CccCEEEECCEEC
Confidence 678899999999999999865 345566666554 6999999988764
No 123
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=95.96 E-value=0.03 Score=33.69 Aligned_cols=54 Identities=19% Similarity=0.318 Sum_probs=38.7
Q ss_pred hHHhHHHHhCCCceeEecCCCC--CChhhhh-cCCCCCccceEEeCCeeeeehHHHHH
Q 040899 2 RVRIALAEKGIEYEYREQNLLN--KGPMLLQ-MNRVHKKVPVLIHNGKPICESTNIVQ 56 (155)
Q Consensus 2 r~~~~l~~~gi~~~~~~v~~~~--~~~~~~~-~~p~~~~vP~l~~~g~~i~es~aI~~ 56 (155)
|+.-+|..+|++|+.+.++... ...++.+ .++. .+||.+..||..+.....+-+
T Consensus 16 ~ak~~L~~~g~~~~~i~~~~~~~~~~~~~~~~~~g~-~tvP~I~i~~~~igg~~d~~~ 72 (80)
T COG0695 16 RAKRLLDRKGVDYEEIDVDDDEPEEAREMVKRGKGQ-RTVPQIFIGGKHVGGCDDLDA 72 (80)
T ss_pred HHHHHHHHcCCCcEEEEecCCcHHHHHHHHHHhCCC-CCcCEEEECCEEEeCcccHHH
Confidence 5677899999999999998765 3334443 4466 799999998877664443333
No 124
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=95.89 E-value=0.031 Score=34.34 Aligned_cols=56 Identities=14% Similarity=0.112 Sum_probs=43.4
Q ss_pred hHHhHHHHhCCCceeEecCCC-CCChhhhhcCCCCCccceEEeCCeeeeehHHHHHHH
Q 040899 2 RVRIALAEKGIEYEYREQNLL-NKGPMLLQMNRVHKKVPVLIHNGKPICESTNIVQYI 58 (155)
Q Consensus 2 r~~~~l~~~gi~~~~~~v~~~-~~~~~~~~~~p~~~~vP~l~~~g~~i~es~aI~~yL 58 (155)
+++-+|...|++|+.+.+... ....++.+.+.. .++|.+..+|..+.+...+....
T Consensus 28 ~ak~~L~~~~i~y~~idv~~~~~~~~~l~~~~g~-~tvP~vfi~g~~iGG~~~l~~l~ 84 (90)
T cd03028 28 KVVQILNQLGVDFGTFDILEDEEVRQGLKEYSNW-PTFPQLYVNGELVGGCDIVKEMH 84 (90)
T ss_pred HHHHHHHHcCCCeEEEEcCCCHHHHHHHHHHhCC-CCCCEEEECCEEEeCHHHHHHHH
Confidence 677899999999999988643 233455566665 69999999999998888877754
No 125
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=95.88 E-value=0.044 Score=32.55 Aligned_cols=58 Identities=21% Similarity=0.299 Sum_probs=45.9
Q ss_pred hHHhHHHHhCCCceeEecCCCCCC----hhhhhcCCCCCccceEEeCCeeeeehHHHHHHHHH
Q 040899 2 RVRIALAEKGIEYEYREQNLLNKG----PMLLQMNRVHKKVPVLIHNGKPICESTNIVQYIDE 60 (155)
Q Consensus 2 r~~~~l~~~gi~~~~~~v~~~~~~----~~~~~~~p~~~~vP~l~~~g~~i~es~aI~~yL~~ 60 (155)
+++-+|...+++|+...++..+.. ..+.+.+.. ..+|.+..+|..+.++..+.++..+
T Consensus 15 ~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~-~~~P~v~~~g~~igg~~~~~~~~~~ 76 (82)
T cd03419 15 RAKSLLKELGVKPAVVELDQHEDGSEIQDYLQELTGQ-RTVPNVFIGGKFIGGCDDLMALHKS 76 (82)
T ss_pred HHHHHHHHcCCCcEEEEEeCCCChHHHHHHHHHHhCC-CCCCeEEECCEEEcCHHHHHHHHHc
Confidence 578889999999999988876432 245556665 6899999999999999998887754
No 126
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=95.55 E-value=0.056 Score=32.63 Aligned_cols=62 Identities=18% Similarity=0.227 Sum_probs=44.9
Q ss_pred hHHhHHHH-----hCCCceeEecCCCC-CChhhhhcCCC-CCccceEEeCCeeeeehHHHHHHHHHhCc
Q 040899 2 RVRIALAE-----KGIEYEYREQNLLN-KGPMLLQMNRV-HKKVPVLIHNGKPICESTNIVQYIDEIHT 63 (155)
Q Consensus 2 r~~~~l~~-----~gi~~~~~~v~~~~-~~~~~~~~~p~-~~~vP~l~~~g~~i~es~aI~~yL~~~~~ 63 (155)
+++-+|.. .|++|+...++-.. ..+++...... ...+|.+..||..+.+...|..++.+.++
T Consensus 16 ~a~~~L~~l~~~~~~i~~~~idi~~~~~~~~el~~~~~~~~~~vP~ifi~g~~igg~~~~~~~~~~~~~ 84 (85)
T PRK11200 16 RAKELAEKLSEERDDFDYRYVDIHAEGISKADLEKTVGKPVETVPQIFVDQKHIGGCTDFEAYVKENLG 84 (85)
T ss_pred HHHHHHHhhcccccCCcEEEEECCCChHHHHHHHHHHCCCCCcCCEEEECCEEEcCHHHHHHHHHHhcc
Confidence 56667777 79999988887431 12344433221 14799999999999999999999988765
No 127
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=95.32 E-value=0.065 Score=33.43 Aligned_cols=56 Identities=14% Similarity=0.147 Sum_probs=41.7
Q ss_pred hHHhHHHHhCCCceeEecCCC-CCChhhhhcCCCCCccceEEeCCeeeeehHHHHHHH
Q 040899 2 RVRIALAEKGIEYEYREQNLL-NKGPMLLQMNRVHKKVPVLIHNGKPICESTNIVQYI 58 (155)
Q Consensus 2 r~~~~l~~~gi~~~~~~v~~~-~~~~~~~~~~p~~~~vP~l~~~g~~i~es~aI~~yL 58 (155)
|++-+|...|++|+.+.+.-. ....++.+.+.. ..+|.+..+|..+.....+....
T Consensus 32 ~ak~lL~~~~i~~~~~di~~~~~~~~~l~~~tg~-~tvP~vfi~g~~iGG~ddl~~l~ 88 (97)
T TIGR00365 32 RAVQILKACGVPFAYVNVLEDPEIRQGIKEYSNW-PTIPQLYVKGEFVGGCDIIMEMY 88 (97)
T ss_pred HHHHHHHHcCCCEEEEECCCCHHHHHHHHHHhCC-CCCCEEEECCEEEeChHHHHHHH
Confidence 678899999999998877532 233455566665 69999999999888777766543
No 128
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=94.83 E-value=0.14 Score=31.13 Aligned_cols=62 Identities=16% Similarity=0.193 Sum_probs=42.1
Q ss_pred hHHhHHHHhC-----CCceeEecCCCC-CChhhhhcCCC-CCccceEEeCCeeeeehHHHHHHHHHhCc
Q 040899 2 RVRIALAEKG-----IEYEYREQNLLN-KGPMLLQMNRV-HKKVPVLIHNGKPICESTNIVQYIDEIHT 63 (155)
Q Consensus 2 r~~~~l~~~g-----i~~~~~~v~~~~-~~~~~~~~~p~-~~~vP~l~~~g~~i~es~aI~~yL~~~~~ 63 (155)
+++-+|...+ ++|+...++... ...++...... ...||.+..||..+.++..|..++.+.++
T Consensus 15 ~ak~~L~~~~~~~~~i~~~~idi~~~~~~~~~l~~~~g~~~~tVP~ifi~g~~igG~~dl~~~~~~~~~ 83 (86)
T TIGR02183 15 RAKQLAEKLAIERADFEFRYIDIHAEGISKADLEKTVGKPVETVPQIFVDEKHVGGCTDFEQLVKENFD 83 (86)
T ss_pred HHHHHHHHhCcccCCCcEEEEECCCCHHHHHHHHHHhCCCCCCcCeEEECCEEecCHHHHHHHHHhccc
Confidence 5677788774 567776665321 12334433221 14899999999999999999999987654
No 129
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=94.74 E-value=0.17 Score=29.98 Aligned_cols=58 Identities=24% Similarity=0.412 Sum_probs=43.8
Q ss_pred hHHhHHHHhCCC--ceeEecCCCCCCh----hhhhcCCCCCccceEEeCCeeeeehHHHHHHHHH
Q 040899 2 RVRIALAEKGIE--YEYREQNLLNKGP----MLLQMNRVHKKVPVLIHNGKPICESTNIVQYIDE 60 (155)
Q Consensus 2 r~~~~l~~~gi~--~~~~~v~~~~~~~----~~~~~~p~~~~vP~l~~~g~~i~es~aI~~yL~~ 60 (155)
+++-+|...+++ |+...++...... .+.+.... ..+|.+..+|..+.++..+.++..+
T Consensus 14 ~~~~~L~~~~i~~~~~~~~v~~~~~~~~~~~~l~~~~g~-~~vP~v~i~g~~igg~~~~~~~~~~ 77 (84)
T TIGR02180 14 KAKEILAKLNVKPAYEVVELDQLSNGSEIQDYLEEITGQ-RTVPNIFINGKFIGGCSDLLALYKS 77 (84)
T ss_pred HHHHHHHHcCCCCCCEEEEeeCCCChHHHHHHHHHHhCC-CCCCeEEECCEEEcCHHHHHHHHHc
Confidence 567789999999 8888887653322 24455554 6899999999999999888877653
No 130
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=94.68 E-value=0.13 Score=32.22 Aligned_cols=55 Identities=20% Similarity=0.241 Sum_probs=41.4
Q ss_pred hHHhHHHHhCCCceeEecCCCCCC----hhhhhcCCCCCccceEEeCCeeeeehHHHHHH
Q 040899 2 RVRIALAEKGIEYEYREQNLLNKG----PMLLQMNRVHKKVPVLIHNGKPICESTNIVQY 57 (155)
Q Consensus 2 r~~~~l~~~gi~~~~~~v~~~~~~----~~~~~~~p~~~~vP~l~~~g~~i~es~aI~~y 57 (155)
|+.-+|...|++|+.+.++..... ..+.+.+.. ..+|.+..+|..+.....+...
T Consensus 23 ~ak~~L~~~~i~~~~vdid~~~~~~~~~~~l~~~tg~-~tvP~Vfi~g~~iGG~ddl~~l 81 (99)
T TIGR02189 23 VVKRLLLTLGVNPAVHEIDKEPAGKDIENALSRLGCS-PAVPAVFVGGKLVGGLENVMAL 81 (99)
T ss_pred HHHHHHHHcCCCCEEEEcCCCccHHHHHHHHHHhcCC-CCcCeEEECCEEEcCHHHHHHH
Confidence 677899999999999998854221 234555665 7999999999988887776654
No 131
>PHA03050 glutaredoxin; Provisional
Probab=94.17 E-value=0.26 Score=31.40 Aligned_cols=54 Identities=13% Similarity=0.175 Sum_probs=41.8
Q ss_pred hHHhHHHHhCC---CceeEecCCCC----CChhhhhcCCCCCccceEEeCCeeeeehHHHHH
Q 040899 2 RVRIALAEKGI---EYEYREQNLLN----KGPMLLQMNRVHKKVPVLIHNGKPICESTNIVQ 56 (155)
Q Consensus 2 r~~~~l~~~gi---~~~~~~v~~~~----~~~~~~~~~p~~~~vP~l~~~g~~i~es~aI~~ 56 (155)
|++-+|...|+ +|+.+.++-.. ...++.+.+.. .+||.+..+|..+.....+..
T Consensus 28 ~ak~~L~~~~i~~~~~~~i~i~~~~~~~~~~~~l~~~tG~-~tVP~IfI~g~~iGG~ddl~~ 88 (108)
T PHA03050 28 NALDILNKFSFKRGAYEIVDIKEFKPENELRDYFEQITGG-RTVPRIFFGKTSIGGYSDLLE 88 (108)
T ss_pred HHHHHHHHcCCCcCCcEEEECCCCCCCHHHHHHHHHHcCC-CCcCEEEECCEEEeChHHHHH
Confidence 67888999999 78888887532 24567777776 799999999998877766555
No 132
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=93.51 E-value=0.22 Score=33.60 Aligned_cols=58 Identities=12% Similarity=0.204 Sum_probs=42.7
Q ss_pred ChHHhHHHHhCCCceeEecCCC-CCChhhhhcCCC---CCccceEEeCCeeeeehHHHHHHH
Q 040899 1 MRVRIALAEKGIEYEYREQNLL-NKGPMLLQMNRV---HKKVPVLIHNGKPICESTNIVQYI 58 (155)
Q Consensus 1 ~r~~~~l~~~gi~~~~~~v~~~-~~~~~~~~~~p~---~~~vP~l~~~g~~i~es~aI~~yL 58 (155)
++++-+|...||+|+++.+++. ...+++.+.... ...+|.+..+|..|.....+.+.-
T Consensus 20 ~~ak~iL~~~~V~~~e~DVs~~~~~~~EL~~~~g~~~~~~tvPqVFI~G~~IGG~del~~L~ 81 (147)
T cd03031 20 NNVRAILESFRVKFDERDVSMDSGFREELRELLGAELKAVSLPRVFVDGRYLGGAEEVLRLN 81 (147)
T ss_pred HHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHhCCCCCCCCCCEEEECCEEEecHHHHHHHH
Confidence 3688999999999999988865 234455544221 158999999999998887776643
No 133
>PF11801 Tom37_C: Tom37 C-terminal domain; InterPro: IPR019564 Tom37 is one of the outer membrane proteins that make up the TOM complex for guiding cytosolic mitochondrial beta-barrel proteins from the cytosol across the outer mitochondrial membrane into the intramembrane space. In conjunction with Tom70, it guides peptides without an mitochondrial targeting sequence (MTS) into Tom40, the protein that forms the passage through the outer membrane []. It has homology with metaxin, also part of the outer mitochondrial membrane beta-barrel protein transport complex []. This entry represents outer mitochondrial membrane transport complex proteins Tom37 and metaxin.; GO: 0006626 protein targeting to mitochondrion, 0005741 mitochondrial outer membrane
Probab=93.17 E-value=0.15 Score=35.16 Aligned_cols=42 Identities=29% Similarity=0.321 Sum_probs=34.9
Q ss_pred HHHHHHHHHHhcCCC---CcccCCC-cChhhhhHHHHHhHH-hhhCh
Q 040899 83 FIAILKTLEEELGDK---PHFEGEN-FGFVDVSLIPLYCWL-ETECP 124 (155)
Q Consensus 83 ~~~~l~~le~~L~~~---~~l~G~~-~t~aD~~~~~~l~~~-~~~~p 124 (155)
-.+++..+++.|++. +|++|+. +|-.||.+++.|.-+ ..+.|
T Consensus 113 a~~~l~~L~~~L~~~~~~~~~f~~~~psslD~L~~ayL~l~l~p~LP 159 (168)
T PF11801_consen 113 AMECLSLLEELLGEWEEARYFFGDSKPSSLDCLAFAYLALLLVPELP 159 (168)
T ss_pred HHHHHHHHHHHHhhccccccccCCCCCCHHHHHHHHHHHHHhcccCC
Confidence 467888899999887 9999988 999999999999866 34444
No 134
>PF11287 DUF3088: Protein of unknown function (DUF3088); InterPro: IPR021439 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=93.10 E-value=0.31 Score=31.16 Aligned_cols=50 Identities=20% Similarity=0.432 Sum_probs=35.8
Q ss_pred ceeEecCCCCCChhhh-hcCCCCCccceEEe-CCe-------------eeeehHHHHHHHHHhCc
Q 040899 14 YEYREQNLLNKGPMLL-QMNRVHKKVPVLIH-NGK-------------PICESTNIVQYIDEIHT 63 (155)
Q Consensus 14 ~~~~~v~~~~~~~~~~-~~~p~~~~vP~l~~-~g~-------------~i~es~aI~~yL~~~~~ 63 (155)
.+++.|+......+.. .++..|..+|+|+. +|. .|+++..|+.||.+.|+
T Consensus 44 ldV~rV~f~RPR~~vi~llGE~~QslPvLVL~~~~~~~~~~~~~~~~rfi~d~~~I~~~La~r~g 108 (112)
T PF11287_consen 44 LDVRRVDFPRPRQAVIALLGEANQSLPVLVLADGAPSPDDAGSHGGRRFIDDPRRILRYLAERHG 108 (112)
T ss_pred ccEEEeCCCCchHHHHHHhChhccCCCEEEeCCCCCCcccccccCCeEEeCCHHHHHHHHHHHcC
Confidence 5666676664444443 34555578999985 444 68999999999999886
No 135
>cd03030 GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3 domain binding glutamic acid-rich protein) subfamily; a recently-identified subfamily composed of SH3BGR and similar proteins possessing significant sequence similarity to GRX, but without a redox active CXXC motif. The SH3BGR gene was cloned in an effort to identify genes mapping to chromosome 21, which could be involved in the pathogenesis of congenital heart disease affecting Down syndrome newborns. Several human SH3BGR-like (SH3BGRL) genes have been identified since, mapping to different locations in the chromosome. Of these, SH3BGRL3 was identified as a tumor necrosis factor (TNF) alpha inhibitory protein and was also named TIP-B1. Upregulation of expression of SH3BGRL3 is associated with differentiation. It has been suggested that it functions as a regulator of differentiation-related signal transduction pathways.
Probab=92.15 E-value=0.44 Score=29.48 Aligned_cols=55 Identities=13% Similarity=0.081 Sum_probs=39.6
Q ss_pred ChHHhHHHHhCCCceeEecCCCC-CChhhhhcC----CCCCccceEEeCCeeeeehHHHHH
Q 040899 1 MRVRIALAEKGIEYEYREQNLLN-KGPMLLQMN----RVHKKVPVLIHNGKPICESTNIVQ 56 (155)
Q Consensus 1 ~r~~~~l~~~gi~~~~~~v~~~~-~~~~~~~~~----p~~~~vP~l~~~g~~i~es~aI~~ 56 (155)
++++.+|..+||+|+++.++... ...+..+.. +. ..+|-+..++.-+.+...+..
T Consensus 20 ~~v~~lL~~k~I~f~eiDI~~d~~~r~em~~~~~~~~g~-~tvPQIFi~~~~iGg~ddl~~ 79 (92)
T cd03030 20 QEVLGFLEAKKIEFEEVDISMNEENRQWMRENVPNENGK-PLPPQIFNGDEYCGDYEAFFE 79 (92)
T ss_pred HHHHHHHHHCCCceEEEecCCCHHHHHHHHHhcCCCCCC-CCCCEEEECCEEeeCHHHHHH
Confidence 46889999999999999998652 333444332 33 589999888888877755544
No 136
>PF09635 MetRS-N: MetRS-N binding domain; InterPro: IPR018285 This entry represents the N-terminal domain of methionyl-tRNA synthetase (MetRS). This N-terminal appended domain mediates non-catalytic complex formation through its interaction with a domain in the tRNA aminoacylation cofactor Arc1p. The interacting domains of MetRS, GluRS (glutamyl-tRNA synthetase) and Arc1p form a ternary complex resembling a classical GST homo-dimer []. Domain-swapping between symmetrically related MetRS-N and Arc1p-N domains generates a 2:2 tetramer held together by van der Waals forces. This domain is necessary for formation of the aminoacyl-tRNA synthetase complex necessary for tRNA nuclear export and shuttling as part of the translational apparatus. ; PDB: 2HSN_A.
Probab=91.22 E-value=0.56 Score=30.50 Aligned_cols=29 Identities=24% Similarity=0.413 Sum_probs=14.5
Q ss_pred CccceEEe--CCeeeeehHHHHHHHHHhCcc
Q 040899 36 KKVPVLIH--NGKPICESTNIVQYIDEIHTD 64 (155)
Q Consensus 36 ~~vP~l~~--~g~~i~es~aI~~yL~~~~~~ 64 (155)
..-|-|.+ +|..++|+.||++|+...|.+
T Consensus 34 ~~~~~L~~~~~gF~L~e~NAIvrYl~nDF~~ 64 (122)
T PF09635_consen 34 ESGPLLKDKKSGFELFEPNAIVRYLANDFEG 64 (122)
T ss_dssp --S--EEE-S--S----HHHHHHHHTT--TT
T ss_pred cccceeeecCCceEEecccHHHHHHHhhcCC
Confidence 35578854 789999999999999988765
No 137
>KOG1668 consensus Elongation factor 1 beta/delta chain [Transcription]
Probab=89.08 E-value=0.39 Score=34.67 Aligned_cols=58 Identities=19% Similarity=0.162 Sum_probs=48.3
Q ss_pred HHHHHHHHHhcCCCCcccCCCcChhhhhHHHHHhHH--hhhChhHHHHHHHhcchhhHHh
Q 040899 84 IAILKTLEEELGDKPHFEGENFGFVDVSLIPLYCWL--ETECPKIIAWAKRCTQRKSVSK 141 (155)
Q Consensus 84 ~~~l~~le~~L~~~~~l~G~~~t~aD~~~~~~l~~~--~~~~p~l~~~~~~~~~~~~~~~ 141 (155)
.+.++.++..|.+++|..|.++|-+|+.+|..+.-- ...+++..+|++.+.+.-...+
T Consensus 10 ~~glk~l~~sLA~ks~~~g~~~s~edv~vf~al~~ep~s~~~v~~~~w~~~l~a~~~~~~ 69 (231)
T KOG1668|consen 10 PAGLKKLNKSLAEKSYIEGYQLSKEDVVVFAALGVEPQSARLVNAERWYSKLEALLRLLA 69 (231)
T ss_pred hhhhhhhhHhhhcccCCCCCCcccccceeehhcccCcchhhhhHHHHHHHHHHHHHHHHh
Confidence 567889999999999999999999999999988533 4568888999998888666553
No 138
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=89.00 E-value=1.2 Score=28.16 Aligned_cols=57 Identities=18% Similarity=0.236 Sum_probs=43.1
Q ss_pred hHHhHHHHhCCCceeEecCCCC----CChhhhhcCCCCCccceEEeCCeeeeehHHHHHHHH
Q 040899 2 RVRIALAEKGIEYEYREQNLLN----KGPMLLQMNRVHKKVPVLIHNGKPICESTNIVQYID 59 (155)
Q Consensus 2 r~~~~l~~~gi~~~~~~v~~~~----~~~~~~~~~p~~~~vP~l~~~g~~i~es~aI~~yL~ 59 (155)
++.-+|...|+++.+.++|-.. ....+.++.-. .+||.+..+|..+..+..+..+-.
T Consensus 29 ~~k~ll~~~~v~~~vvELD~~~~g~eiq~~l~~~tg~-~tvP~vFI~Gk~iGG~~dl~~lh~ 89 (104)
T KOG1752|consen 29 RAKELLSDLGVNPKVVELDEDEDGSEIQKALKKLTGQ-RTVPNVFIGGKFIGGASDLMALHK 89 (104)
T ss_pred HHHHHHHhCCCCCEEEEccCCCCcHHHHHHHHHhcCC-CCCCEEEECCEEEcCHHHHHHHHH
Confidence 4667788889999999998764 33344455665 699999999999988888776543
No 139
>PRK10824 glutaredoxin-4; Provisional
Probab=87.26 E-value=2.1 Score=27.63 Aligned_cols=56 Identities=14% Similarity=0.162 Sum_probs=42.1
Q ss_pred hHHhHHHHhCCCceeEecCCC-CCChhhhhcCCCCCccceEEeCCeeeeehHHHHHHH
Q 040899 2 RVRIALAEKGIEYEYREQNLL-NKGPMLLQMNRVHKKVPVLIHNGKPICESTNIVQYI 58 (155)
Q Consensus 2 r~~~~l~~~gi~~~~~~v~~~-~~~~~~~~~~p~~~~vP~l~~~g~~i~es~aI~~yL 58 (155)
|+.-+|...|++|....++-. .....+...+.. .+||-+..+|..|..+..+....
T Consensus 35 ~ak~lL~~~~i~~~~idi~~d~~~~~~l~~~sg~-~TVPQIFI~G~~IGG~ddl~~l~ 91 (115)
T PRK10824 35 QAVQALSACGERFAYVDILQNPDIRAELPKYANW-PTFPQLWVDGELVGGCDIVIEMY 91 (115)
T ss_pred HHHHHHHHcCCCceEEEecCCHHHHHHHHHHhCC-CCCCeEEECCEEEcChHHHHHHH
Confidence 567788999999998777543 233455566665 79999999999998887776644
No 140
>PTZ00062 glutaredoxin; Provisional
Probab=82.99 E-value=3.1 Score=29.69 Aligned_cols=56 Identities=21% Similarity=0.127 Sum_probs=40.6
Q ss_pred hHHhHHHHhCCCceeEecCCC-CCChhhhhcCCCCCccceEEeCCeeeeehHHHHHHH
Q 040899 2 RVRIALAEKGIEYEYREQNLL-NKGPMLLQMNRVHKKVPVLIHNGKPICESTNIVQYI 58 (155)
Q Consensus 2 r~~~~l~~~gi~~~~~~v~~~-~~~~~~~~~~p~~~~vP~l~~~g~~i~es~aI~~yL 58 (155)
++.-+|...||+|....++-. .....+.+.+.. ..+|.+..+|..+.....+.+..
T Consensus 133 ~~k~~L~~~~i~y~~~DI~~d~~~~~~l~~~sg~-~TvPqVfI~G~~IGG~d~l~~l~ 189 (204)
T PTZ00062 133 AVVNMLNSSGVKYETYNIFEDPDLREELKVYSNW-PTYPQLYVNGELIGGHDIIKELY 189 (204)
T ss_pred HHHHHHHHcCCCEEEEEcCCCHHHHHHHHHHhCC-CCCCeEEECCEEEcChHHHHHHH
Confidence 577789999999998777533 233445555655 68999999999888777766533
No 141
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=79.10 E-value=5.7 Score=31.45 Aligned_cols=54 Identities=11% Similarity=0.123 Sum_probs=37.7
Q ss_pred hHHhHHHHhCCCceeEecCCCCCChhhh-h--------cCCCCCccceEEeCCeeeeehHHHHH
Q 040899 2 RVRIALAEKGIEYEYREQNLLNKGPMLL-Q--------MNRVHKKVPVLIHNGKPICESTNIVQ 56 (155)
Q Consensus 2 r~~~~l~~~gi~~~~~~v~~~~~~~~~~-~--------~~p~~~~vP~l~~~g~~i~es~aI~~ 56 (155)
|+.-+|...||+|+.+.++-.....++. + .... ..||.+..||..+..-..+..
T Consensus 17 ~aK~~L~~~gi~~~~idi~~~~~~~~~~~~~~~~~~~~~~g~-~tvP~ifi~~~~igGf~~l~~ 79 (410)
T PRK12759 17 LAKSWFGANDIPFTQISLDDDVKRAEFYAEVNKNILLVEEHI-RTVPQIFVGDVHIGGYDNLMA 79 (410)
T ss_pred HHHHHHHHCCCCeEEEECCCChhHHHHHHHHhhccccccCCC-CccCeEEECCEEEeCchHHHH
Confidence 5778999999999999887332112221 2 1344 589999999988877766655
No 142
>PF04908 SH3BGR: SH3-binding, glutamic acid-rich protein; InterPro: IPR006993 This family of proteins, which contains SH3BGRL3, is functionally uncharacterised. SH3BGRL3 is a highly conserved small protein, which is widely expressed and shows a significant similarity to glutaredoxin 1 (GRX1) of Escherichia coli which is predicted to belong to the thioredoxin superfamily. However, SH3BGRL3 lacks both conserved cysteine residues, which characterise the enzymatic active site of GRX. This structural feature raises the possibility that SH3BGRL3 and its homologues could function as endogenous modulators of GRX activity []. ; PDB: 1SJ6_A 1U6T_A 1WRY_A 1T1V_B 1J0F_A 2CT6_A.
Probab=77.23 E-value=6 Score=24.82 Aligned_cols=56 Identities=13% Similarity=0.112 Sum_probs=32.5
Q ss_pred ChHHhHHHHhCCCceeEecCCCC-CChhhhhcC---------CCCCccceEEeCCeeeeehHHHHHH
Q 040899 1 MRVRIALAEKGIEYEYREQNLLN-KGPMLLQMN---------RVHKKVPVLIHNGKPICESTNIVQY 57 (155)
Q Consensus 1 ~r~~~~l~~~gi~~~~~~v~~~~-~~~~~~~~~---------p~~~~vP~l~~~g~~i~es~aI~~y 57 (155)
+++...|+.++|+|+.+-+.... ...+..+.. +. ...|-|..|+..+.+--.+-+.
T Consensus 21 ~~v~~iL~a~kI~fe~vDIa~~e~~r~~mr~~~g~~~~~~~~~~-~lpPqiF~~~~Y~Gdye~f~ea 86 (99)
T PF04908_consen 21 QRVLMILEAKKIPFEEVDIAMDEEARQWMRENAGPEEKDPGNGK-PLPPQIFNGDEYCGDYEDFEEA 86 (99)
T ss_dssp HHHHHHHHHTT--EEEEETTT-HHHHHHHHHHT--CCCS-TSTT---S-EEEETTEEEEEHHHHHHH
T ss_pred HHHHHHHHHcCCCcEEEeCcCCHHHHHHHHHhccccccCCCCCC-CCCCEEEeCCEEEeeHHHHHHH
Confidence 47899999999999988887642 222233222 32 3457788888777766555443
No 143
>TIGR02681 phage_pRha phage regulatory protein, rha family. Members of this protein family are found in temperate phage and bacterial prophage regions. Members include the product of the rha gene of the lambdoid phage phi-80, a late operon gene. The presence of this gene interferes with infection of bacterial strains that lack integration host factor (IHF), which regulates the rha gene. It is suggested that pRha is a phage regulatory protein.
Probab=64.35 E-value=8.4 Score=24.54 Aligned_cols=27 Identities=15% Similarity=0.368 Sum_probs=22.5
Q ss_pred cceEE-eCCeeeeehHHHHHHHHHhCcc
Q 040899 38 VPVLI-HNGKPICESTNIVQYIDEIHTD 64 (155)
Q Consensus 38 vP~l~-~~g~~i~es~aI~~yL~~~~~~ 64 (155)
.|.+. .+|.++++|..|+++..+.+..
T Consensus 2 ~~~v~~~~~~~~ttS~~IAe~fgK~H~~ 29 (108)
T TIGR02681 2 FPKVFTKRNQVVTDSLTMAQMFGKRHDN 29 (108)
T ss_pred CceEEEECCEEEEeHHHHHHHHCcchHH
Confidence 46665 5999999999999999987765
No 144
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=61.57 E-value=19 Score=21.42 Aligned_cols=45 Identities=18% Similarity=0.333 Sum_probs=29.0
Q ss_pred hHHHHhCCCceeEecCCC-----------CCChhhhhcCCC-CCccceEEe-CCeeee
Q 040899 5 IALAEKGIEYEYREQNLL-----------NKGPMLLQMNRV-HKKVPVLIH-NGKPIC 49 (155)
Q Consensus 5 ~~l~~~gi~~~~~~v~~~-----------~~~~~~~~~~p~-~~~vP~l~~-~g~~i~ 49 (155)
-.|+..+++|+.+.+.-. +..++|...-.. +--+|+|.. ||.++.
T Consensus 20 eyl~rl~v~yd~VeIt~Sm~NlKrFl~lRDs~~~Fd~vk~~gyiGIPall~~d~~vVl 77 (85)
T COG4545 20 EYLERLNVDYDFVEITESMANLKRFLHLRDSRPEFDEVKSNGYIGIPALLTDDGKVVL 77 (85)
T ss_pred HHHHHcCCCceeeehhhhhhhHHHHHhhhccchhHHhhhhcCcccceEEEeCCCcEEE
Confidence 457788999999888522 455666543222 135899974 776654
No 145
>PRK09266 hypothetical protein; Provisional
Probab=58.52 E-value=15 Score=27.14 Aligned_cols=56 Identities=14% Similarity=0.133 Sum_probs=39.2
Q ss_pred HHHHhCCCceeEecCCCC---CChhhhhcCCCCCccceEEeCCeeeeehHHHHHHHHHhC
Q 040899 6 ALAEKGIEYEYREQNLLN---KGPMLLQMNRVHKKVPVLIHNGKPICESTNIVQYIDEIH 62 (155)
Q Consensus 6 ~l~~~gi~~~~~~v~~~~---~~~~~~~~~p~~~~vP~l~~~g~~i~es~aI~~yL~~~~ 62 (155)
.+...|+++++..+++.+ ..+.|. .|...|-+|+-..|+..+.+...+.+.|.+.|
T Consensus 200 ~~~~~g~~v~e~~i~~~eL~~adevfl-tnSl~gi~pV~~i~~~~~~~~~~~~~~l~~~~ 258 (266)
T PRK09266 200 GLERLGIPQRTRPVTLADLGRFAGAFA-CNAWRGQRAVSAIDDVALPDSHALLELLRRAY 258 (266)
T ss_pred HHHHcCCeeEEEECCHHHHHHhhHhhh-hcCccceEEEEEECCEECCCCchHHHHHHHHH
Confidence 456679999999998753 333444 45544899999988887765567777776544
No 146
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=57.08 E-value=36 Score=19.67 Aligned_cols=43 Identities=28% Similarity=0.295 Sum_probs=26.6
Q ss_pred HhHHHHhCCCceeEecCCCCCChhhhhcCCCCCccceEEeCCeeeeeh
Q 040899 4 RIALAEKGIEYEYREQNLLNKGPMLLQMNRVHKKVPVLIHNGKPICES 51 (155)
Q Consensus 4 ~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~~~g~~i~es 51 (155)
.-++...|++++...+ ...++..+.+= ..+|+++.||...+..
T Consensus 21 ~~~~~~~~i~~ei~~~---~~~~~~~~ygv--~~vPalvIng~~~~~G 63 (76)
T PF13192_consen 21 KEAAEELGIEVEIIDI---EDFEEIEKYGV--MSVPALVINGKVVFVG 63 (76)
T ss_dssp HHHHHHTTEEEEEEET---TTHHHHHHTT---SSSSEEEETTEEEEES
T ss_pred HHHHHhcCCeEEEEEc---cCHHHHHHcCC--CCCCEEEECCEEEEEe
Confidence 3456667777766654 22344444555 4899999988765554
No 147
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=55.70 E-value=39 Score=19.58 Aligned_cols=41 Identities=20% Similarity=0.288 Sum_probs=27.8
Q ss_pred HhHHHHhCCCceeEecCCCCCChhhhhcCCCCCccceEEeCCeeee
Q 040899 4 RIALAEKGIEYEYREQNLLNKGPMLLQMNRVHKKVPVLIHNGKPIC 49 (155)
Q Consensus 4 ~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~~~g~~i~ 49 (155)
.-++.+.|+++++..++- .++..+.+- ..+|++..+|..+.
T Consensus 21 ~~~~~e~~~~~~~~~v~~---~~~a~~~~v--~~vPti~i~G~~~~ 61 (76)
T TIGR00412 21 KKAVEELGIDAEFEKVTD---MNEILEAGV--TATPGVAVDGELVI 61 (76)
T ss_pred HHHHHHcCCCeEEEEeCC---HHHHHHcCC--CcCCEEEECCEEEE
Confidence 346777888888888871 233344455 48999998886554
No 148
>cd06891 PX_Vps17p The phosphoinositide binding Phox Homology domain of yeast sorting nexin Vps17p. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Vsp17p forms a dimer with Vps5p, the yeast counterpart of human SNX1, and is part of the retromer complex that mediates the transport of the carboxypeptidase Y receptor Vps10p from endosomes to Golgi. Similar to Vps5p and SNX1, Vps17p harbors a Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvatur
Probab=51.87 E-value=14 Score=24.70 Aligned_cols=31 Identities=13% Similarity=0.255 Sum_probs=22.4
Q ss_pred hhhChhHHHHHHHhcchhhHHhhcchhhHHhhhhh
Q 040899 120 ETECPKIIAWAKRCTQRKSVSKSLKDEKKVLGFVQ 154 (155)
Q Consensus 120 ~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (155)
..---.|++|++++.++|. +...+++..|++
T Consensus 108 ~~rr~~LqrfL~RV~~hP~----L~~d~~l~~FLE 138 (140)
T cd06891 108 RKLKANLQRWFNRVCSDPI----LIRDEELRFFIE 138 (140)
T ss_pred HHHHHHHHHHHHHHhCChh----hccCHHHHHHhc
Confidence 3446789999999999994 445566666654
No 149
>PRK15371 effector protein YopJ; Provisional
Probab=42.21 E-value=40 Score=25.52 Aligned_cols=42 Identities=21% Similarity=0.412 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCcccCCCcChhhhhHHHHHhHH
Q 040899 77 EEMTKEFIAILKTLEEELGDKPHFEGENFGFVDVSLIPLYCWL 119 (155)
Q Consensus 77 ~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aD~~~~~~l~~~ 119 (155)
....+++..+++.||..+.++.|+. ..++..|+-+.|.+...
T Consensus 22 ~~~~~~L~~~i~~le~~~~~G~~~~-~~~~~~Di~~lp~lv~~ 63 (287)
T PRK15371 22 EISNEELKNIITQLEDDIADGSWIH-KNYARTDLEVMPALVAQ 63 (287)
T ss_pred hhhHHHHHHHHHHHHHHHHcCCCCC-chhHHhhHHhhHHHHHH
Confidence 3466779999999999999988884 45899999999999877
No 150
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=40.93 E-value=15 Score=23.80 Aligned_cols=56 Identities=16% Similarity=0.130 Sum_probs=34.6
Q ss_pred HHHHhCCCceeEecCCCC-CChhhhhcCCCCCccceEEe---CCeeeeehHHHHHHHHHh
Q 040899 6 ALAEKGIEYEYREQNLLN-KGPMLLQMNRVHKKVPVLIH---NGKPICESTNIVQYIDEI 61 (155)
Q Consensus 6 ~l~~~gi~~~~~~v~~~~-~~~~~~~~~p~~~~vP~l~~---~g~~i~es~aI~~yL~~~ 61 (155)
++...|++.+....+... ...+-....|..|.+|+++| -..+.-|..-|+.|+.+.
T Consensus 31 l~e~~g~~I~~~r~~~~~~l~~e~~~~~~~sGy~PtViD~lrRC~T~EEALEVInylek~ 90 (128)
T PF09868_consen 31 LEEEEGISIEGYRLDEEQVLEEEEEEPDDFSGYNPTVIDYLRRCKTDEEALEVINYLEKR 90 (128)
T ss_pred HhccCCCceeeeechhhhhhhhccccCCCccCCCChHHHHHHHhCcHHHHHHHHHHHHHh
Confidence 345567777665554321 11111124444488999886 456778889999999874
No 151
>TIGR01764 excise DNA binding domain, excisionase family. An excisionase, or Xis protein, is a small protein that binds and promotes excisive recombination; it is not enzymatically active. This model represents a number of putative excisionases and related proteins from temperate phage, plasmids, and transposons, as well as DNA binding domains of other proteins, such as a DNA modification methylase. This model identifies mostly small proteins and N-terminal regions of large proteins, but some proteins appear to have two copies. This domain appears similar, in both sequence and predicted secondary structure (PSIPRED) to the MerR family of transcriptional regulators (pfam00376).
Probab=40.05 E-value=52 Score=16.55 Aligned_cols=24 Identities=8% Similarity=0.213 Sum_probs=19.8
Q ss_pred CccceEEeCCeeeeehHHHHHHHH
Q 040899 36 KKVPVLIHNGKPICESTNIVQYID 59 (155)
Q Consensus 36 ~~vP~l~~~g~~i~es~aI~~yL~ 59 (155)
|.+|....++........|.+|+.
T Consensus 25 g~i~~~~~g~~~~~~~~~l~~~~~ 48 (49)
T TIGR01764 25 GELPAYRVGRHYRIPREDVDEYLE 48 (49)
T ss_pred CCCCeEEeCCeEEEeHHHHHHHHh
Confidence 688988777888888888888875
No 152
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=37.56 E-value=73 Score=17.45 Aligned_cols=35 Identities=29% Similarity=0.291 Sum_probs=19.3
Q ss_pred CCCceeEecCCCCCChhhhhcCCCCCccceEEeCCeeee
Q 040899 11 GIEYEYREQNLLNKGPMLLQMNRVHKKVPVLIHNGKPIC 49 (155)
Q Consensus 11 gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~~~g~~i~ 49 (155)
+++|.. +|..+. +++.+.... ..+|++..+|..+.
T Consensus 30 ~i~~~~--id~~~~-~~l~~~~~i-~~vPti~i~~~~~~ 64 (67)
T cd02973 30 NISAEM--IDAAEF-PDLADEYGV-MSVPAIVINGKVEF 64 (67)
T ss_pred ceEEEE--EEcccC-HhHHHHcCC-cccCEEEECCEEEE
Confidence 344444 443332 344444343 47999998886554
No 153
>cd00449 PLPDE_IV PyridoxaL 5'-Phosphate Dependent Enzymes class IV (PLPDE_IV). This D-amino acid superfamily, one of five classes of PLPDE, consists of branched-chain amino acid aminotransferases (BCAT), D-amino acid transferases (DAAT), and 4-amino-4-deoxychorismate lyases (ADCL). BCAT catalyzes the reversible transamination reaction between the L-branched-chain amino and alpha-keto acids. DAAT catalyzes the synthesis of D-glutamic acid and D-alanine, and ADCL converts 4-amino-4-deoxychorismate to p-aminobenzoate and pyruvate. Except for a few enzymes, i. e., Escherichia coli and Salmonella BCATs, which are homohexamers arranged as a double trimer, the class IV PLPDEs are homodimers. Homodimer formation is required for catalytic activity.
Probab=37.44 E-value=37 Score=24.57 Aligned_cols=55 Identities=22% Similarity=0.267 Sum_probs=37.0
Q ss_pred HHHHhCCCceeEecCCC---CCChhhhhcCCCCCccceEEeCCeee--eehHHHHHHHHHh
Q 040899 6 ALAEKGIEYEYREQNLL---NKGPMLLQMNRVHKKVPVLIHNGKPI--CESTNIVQYIDEI 61 (155)
Q Consensus 6 ~l~~~gi~~~~~~v~~~---~~~~~~~~~~p~~~~vP~l~~~g~~i--~es~aI~~yL~~~ 61 (155)
.+...|+++++..+++. +..+-|.--+.. |-+|+-..++..+ .....+.+.|.+.
T Consensus 196 ~~~~~g~~v~e~~i~~~dL~~adevfl~ns~~-gv~pV~~i~~~~~~~~~~~~~~~~l~~~ 255 (256)
T cd00449 196 LAKELGIKVEERPISLDELYAADEVFLTGTAA-EVTPVTEIDGRGIGDGKPGPVTRKLREL 255 (256)
T ss_pred HHHHcCCeEEEEecCHHHHhhCCEEEEccccc-eEEEEEEECCeecCCCCCCHHHHHHHHh
Confidence 46677999999988865 233334433444 8899998887766 3556777777543
No 154
>PRK06092 4-amino-4-deoxychorismate lyase; Reviewed
Probab=36.89 E-value=48 Score=24.34 Aligned_cols=55 Identities=16% Similarity=0.230 Sum_probs=36.5
Q ss_pred HHHHhCCCceeEecCCC---CCChhhhhcCCCCCccceEEeCCeeeeehHHHHHHHHHhC
Q 040899 6 ALAEKGIEYEYREQNLL---NKGPMLLQMNRVHKKVPVLIHNGKPICESTNIVQYIDEIH 62 (155)
Q Consensus 6 ~l~~~gi~~~~~~v~~~---~~~~~~~~~~p~~~~vP~l~~~g~~i~es~aI~~yL~~~~ 62 (155)
.+...|+++++..+.+. +..+-|. .|...|-+|+-..|+..+. +..+.+.|.+.+
T Consensus 208 ~~~~~g~~v~e~~i~~~dL~~adevfl-tns~~gi~pV~~id~~~~~-~g~~~~~l~~~~ 265 (268)
T PRK06092 208 LLAQSGYPVVEVDASLEELLQADEVFI-CNSLMPVWPVRAIGETSYS-SGTLTRYLQPLC 265 (268)
T ss_pred HHHHcCCeEEEEECCHHHHhhCCEEEE-eCCcceEEEEEEECCEEcc-chHHHHHHHHHH
Confidence 45677999999999865 2333344 3443388999988887663 456767665543
No 155
>cd01557 BCAT_beta_family BCAT_beta_family: Branched-chain aminotransferase catalyses the transamination of the branched-chain amino acids leusine, isoleucine and valine to their respective alpha-keto acids, alpha-ketoisocaproate, alpha-keto-beta-methylvalerate and alpha-ketoisovalerate. The enzyme requires pyridoxal 5'-phosphate (PLP) as a cofactor to catalyze the reaction. It has been found that mammals have two foms of the enzyme - mitochondrial and cytosolic forms while bacteria contain only one form of the enzyme. The mitochondrial form plays a significant role in skeletal muscle glutamine and alanine synthesis and in interorgan nitrogen metabolism.Members of this subgroup are widely distributed in all three forms of life.
Probab=36.27 E-value=26 Score=26.03 Aligned_cols=56 Identities=13% Similarity=0.027 Sum_probs=37.2
Q ss_pred hHHHHhCCCceeEecCCC---CCChhhhhcCCCCCccceEEeCCeee----eehHHHHHHHHHh
Q 040899 5 IALAEKGIEYEYREQNLL---NKGPMLLQMNRVHKKVPVLIHNGKPI----CESTNIVQYIDEI 61 (155)
Q Consensus 5 ~~l~~~gi~~~~~~v~~~---~~~~~~~~~~p~~~~vP~l~~~g~~i----~es~aI~~yL~~~ 61 (155)
-++...|++++...+.+. +..+-|..-+.. |-+|+-..++..+ .....|.+.|.+.
T Consensus 210 ~~~~~~Gi~v~e~~i~~~~l~~ade~f~~ns~~-gi~pV~~i~~~~~~~~~~~~gp~~~~l~~~ 272 (279)
T cd01557 210 ELARDLGIKVEERPITRDELYEADEVFATGTAA-VVTPVGEIDYRGKEPGEGEVGPVTKKLYDL 272 (279)
T ss_pred HHHHHcCCeEEEEeCCHHHHhhCCEEEEeccee-EEEEEEEEccccccCCCCCCCHHHHHHHHH
Confidence 356778999999998865 233344433444 8899998877765 4556676666543
No 156
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=34.35 E-value=33 Score=22.44 Aligned_cols=20 Identities=25% Similarity=0.307 Sum_probs=17.1
Q ss_pred ChHHhHHHHhCCCceeEecC
Q 040899 1 MRVRIALAEKGIEYEYREQN 20 (155)
Q Consensus 1 ~r~~~~l~~~gi~~~~~~v~ 20 (155)
+|++-+|...|++|+++.+-
T Consensus 15 RKA~~~L~~~gi~~~~~d~~ 34 (126)
T TIGR01616 15 ARQKAALKASGHDVEVQDIL 34 (126)
T ss_pred HHHHHHHHHCCCCcEEEecc
Confidence 47888999999999998764
No 157
>PRK13356 aminotransferase; Provisional
Probab=33.63 E-value=44 Score=24.93 Aligned_cols=53 Identities=17% Similarity=0.170 Sum_probs=36.0
Q ss_pred HHHHhCCCceeEecCCC---CCChhhhhcCCCCCccceEEeCCeeeeehHHHHHHHHH
Q 040899 6 ALAEKGIEYEYREQNLL---NKGPMLLQMNRVHKKVPVLIHNGKPICESTNIVQYIDE 60 (155)
Q Consensus 6 ~l~~~gi~~~~~~v~~~---~~~~~~~~~~p~~~~vP~l~~~g~~i~es~aI~~yL~~ 60 (155)
.+...|+++++..+.+. +..+-|..-+.. +-+|+-..++..+. ...+.+.|.+
T Consensus 221 ~a~~~gi~v~e~~i~~~eL~~adevfltns~~-gi~PV~~id~~~~~-~g~~~~~l~~ 276 (286)
T PRK13356 221 LLREDGVTVVETTLTYEDFLEADEVFSTGNYS-KVVPVTRFDDRSLQ-PGPVTRRARE 276 (286)
T ss_pred HHHHcCCeEEEEecCHHHHHhcCceEEecChh-eEEEEEEECCEEec-CChHHHHHHH
Confidence 56778999999999864 344445444555 78999998887763 3456555544
No 158
>KOG2824 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=33.25 E-value=64 Score=24.26 Aligned_cols=56 Identities=16% Similarity=0.203 Sum_probs=40.7
Q ss_pred hHHhHHHHhCCCceeEecCCCC-CChhhhhcCC---CCCccceEEeCCeeeeehHHHHHH
Q 040899 2 RVRIALAEKGIEYEYREQNLLN-KGPMLLQMNR---VHKKVPVLIHNGKPICESTNIVQY 57 (155)
Q Consensus 2 r~~~~l~~~gi~~~~~~v~~~~-~~~~~~~~~p---~~~~vP~l~~~g~~i~es~aI~~y 57 (155)
.||.+|+-.+|-|+++-|++.. ...|+..+-. ....+|.+..+|..|...--|.+-
T Consensus 152 ~VR~ilesf~V~v~ERDVSMd~~fr~EL~~~lg~~~~~~~LPrVFV~GryIGgaeeV~~L 211 (281)
T KOG2824|consen 152 AVRAILESFRVKVDERDVSMDSEFREELQELLGEDEKAVSLPRVFVKGRYIGGAEEVVRL 211 (281)
T ss_pred HHHHHHHhCceEEEEecccccHHHHHHHHHHHhcccccCccCeEEEccEEeccHHHhhhh
Confidence 5899999999999999999873 4444443311 125799777899888877766654
No 159
>PRK06606 branched-chain amino acid aminotransferase; Validated
Probab=32.80 E-value=45 Score=25.17 Aligned_cols=55 Identities=15% Similarity=0.148 Sum_probs=36.0
Q ss_pred hHHHHhCCCceeEecCCC---CCChhhhhcCCCCCccceEEeCCeeee--ehHHHHHHHHH
Q 040899 5 IALAEKGIEYEYREQNLL---NKGPMLLQMNRVHKKVPVLIHNGKPIC--ESTNIVQYIDE 60 (155)
Q Consensus 5 ~~l~~~gi~~~~~~v~~~---~~~~~~~~~~p~~~~vP~l~~~g~~i~--es~aI~~yL~~ 60 (155)
-++...|+++++..+.+. +..+-|..-+.. |-+|+-..|+..+. ....+.+.|.+
T Consensus 227 ~~~~~~g~~v~e~~i~~~eL~~AdevfltnS~~-gi~PV~~id~~~~~~g~~g~~~~~L~~ 286 (306)
T PRK06606 227 TLAKDLGIEVIERRITRDELYIADEVFFTGTAA-EVTPIREVDGRQIGNGKRGPITEKLQS 286 (306)
T ss_pred HHHHHcCCcEEEEeCCHHHHhhCCEEEEcCCcc-eEEEEEEECcEECCCCCCCHHHHHHHH
Confidence 356778999999998864 333444434445 88999998887764 33455554443
No 160
>PF03421 YopJ: YopJ Serine/Threonine acetyltransferase; InterPro: IPR005083 The infection of mammalian host cells by Yersinia sp. causes a rapid induction of the mitogen-activated protein kinase (MAPK; including the ERK, JNK and p38 pathways) and nuclear factor kappaB (NF-kappaB) signalling pathways that would typically result in cytokine production and initiation of the innate immune response. However, these pathways are rapidly inhibited promoting apoptosis. YopJ has been shown to block phosphorylation of active site residues []. It has also been shown that YopJ acetyltransferase is activated by eukaryotic host cell inositol hexakisphosphate []. Serine and threonine acetylation is yet another complication to the control of signalling pathways and may be a may be a widespread mode of biochemical regulation of endogenous processes in eukaryotic cells. It has been shown that YopJ is a serine/threonine acetyltransferase []. It acetylates the serine and threonine residues in the phosphorylation sites of MAPK kinases and nuclear factor kappaB, preventing their activation by phosphorylation and the inhibition of these signalling pathways []. This entry contains YopJ and related proteins.
Probab=32.00 E-value=73 Score=22.18 Aligned_cols=38 Identities=13% Similarity=0.348 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHhcCCCCcccCCCcChhhhhHHHHHhHH
Q 040899 81 KEFIAILKTLEEELGDKPHFEGENFGFVDVSLIPLYCWL 119 (155)
Q Consensus 81 ~~~~~~l~~le~~L~~~~~l~G~~~t~aD~~~~~~l~~~ 119 (155)
+.+..+.+.+++.+..+.|+ ...++..|+-+.|.|...
T Consensus 2 ~~L~~y~~~~~~~~~~g~~~-~~~~~~~D~~~lp~lv~~ 39 (177)
T PF03421_consen 2 ESLKEYIERLEDDIKNGSWP-NESYAELDIKMLPALVAA 39 (177)
T ss_pred hHHHHHHHHHHHHHHhCCCC-CcchhhhhHHHHHHHHHH
Confidence 45778889999999988888 566999999999998876
No 161
>PRK07544 branched-chain amino acid aminotransferase; Validated
Probab=31.91 E-value=47 Score=24.83 Aligned_cols=54 Identities=15% Similarity=0.036 Sum_probs=35.9
Q ss_pred hHHHHhCCCceeEecCCC---CCChhhhhcCCCCCccceEEeCCeeeeehHHHHHHHHH
Q 040899 5 IALAEKGIEYEYREQNLL---NKGPMLLQMNRVHKKVPVLIHNGKPICESTNIVQYIDE 60 (155)
Q Consensus 5 ~~l~~~gi~~~~~~v~~~---~~~~~~~~~~p~~~~vP~l~~~g~~i~es~aI~~yL~~ 60 (155)
-++...|++++...+.+. +..+-|..-+.+ |-+|+...++..+. ...+.+.|.+
T Consensus 224 ~~a~~~g~~v~e~~i~~~eL~~adevfltnS~~-gi~PV~~i~~~~~~-~g~~~~~l~~ 280 (292)
T PRK07544 224 ELAKRRGIEVVERHIMPEELAGFSECFLTGTAA-EVTPVSEIGEYRFT-PGAITRDLMD 280 (292)
T ss_pred HHHHHcCCeEEEEecCHHHHhhcCceeecCccc-eEEEEEEEeeEEeC-CChHHHHHHH
Confidence 356678999999999865 333444444555 89999998876653 3455555543
No 162
>COG0278 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=31.86 E-value=1.4e+02 Score=18.95 Aligned_cols=56 Identities=14% Similarity=0.181 Sum_probs=34.9
Q ss_pred hHHhHHHHhCCCceeEecCCC---CCChhhhhcCCCCCccceEEeCCeeeeehHHHHHHHH
Q 040899 2 RVRIALAEKGIEYEYREQNLL---NKGPMLLQMNRVHKKVPVLIHNGKPICESTNIVQYID 59 (155)
Q Consensus 2 r~~~~l~~~gi~~~~~~v~~~---~~~~~~~~~~p~~~~vP~l~~~g~~i~es~aI~~yL~ 59 (155)
++-=+|..+|+ .+...+|.. +..+.+++.+-= .+.|=|-.+|..+..|..|.+-..
T Consensus 35 ~~vqiL~~~g~-v~~~~vnVL~d~eiR~~lk~~s~W-PT~PQLyi~GEfvGG~DIv~Em~q 93 (105)
T COG0278 35 QAVQILSACGV-VDFAYVDVLQDPEIRQGLKEYSNW-PTFPQLYVNGEFVGGCDIVREMYQ 93 (105)
T ss_pred HHHHHHHHcCC-cceeEEeeccCHHHHhccHhhcCC-CCCceeeECCEEeccHHHHHHHHH
Confidence 34456788885 444445443 233344444443 478888899999999887766443
No 163
>PF11732 Thoc2: Transcription- and export-related complex subunit; InterPro: IPR021726 The THO/TREX complex is the transcription- and export-related complex associated with spliceosomes that preferentially deal with spliced mRNAs as opposed to unspliced mRNAs. Thoc2 plays a role in RNA polymerase II (RNA pol II)-dependent transcription and is required for the stability of DNA repeats []. In humans, the TRE complex is comprised of the exon-junction-associated proteins Aly/REF and UAP56 together with the THO proteins THOC1 (hHpr1/p84), Thoc2 (hRlr1), THOC3 (hTex1), THOC5 (fSAP79), THOC6 (fSAP35), and THOC7 (fSAP24). Although much evidence indicates that the function of the TREX complex as an adaptor between the mRNA and components of the export machinery is conserved among eukaryotes, in Drosophila the majority of mRNAs can be exported from the nucleus independently of the THO complex []. This entry represents a conserved domain found towards the N terminus of these proteins.
Probab=31.64 E-value=65 Score=19.20 Aligned_cols=34 Identities=24% Similarity=0.353 Sum_probs=24.1
Q ss_pred CcccCCCcChhhhhHHHHHhHH--------hhhChhHHHHHHHhc
Q 040899 98 PHFEGENFGFVDVSLIPLYCWL--------ETECPKIIAWAKRCT 134 (155)
Q Consensus 98 ~~l~G~~~t~aD~~~~~~l~~~--------~~~~p~l~~~~~~~~ 134 (155)
+|+.. ++ =|+..|+.+.++ .++.-++..|+.++.
T Consensus 35 ky~t~--l~-~DvL~~~ll~~L~~~~r~~~k~dg~~~s~Wlq~La 76 (77)
T PF11732_consen 35 KYFTD--LG-YDVLTFCLLERLSNPGRSRLKDDGTNISQWLQSLA 76 (77)
T ss_pred hhcch--hh-HHHHHHHHHHHHhcccchhcCcCCCCHHHHHHHHh
Confidence 46642 33 388889999888 345677899998875
No 164
>COG3646 Uncharacterized phage-encoded protein [Function unknown]
Probab=31.38 E-value=44 Score=23.11 Aligned_cols=21 Identities=19% Similarity=0.322 Sum_probs=18.4
Q ss_pred CCeeeeehHHHHHHHHHhCcc
Q 040899 44 NGKPICESTNIVQYIDEIHTD 64 (155)
Q Consensus 44 ~g~~i~es~aI~~yL~~~~~~ 64 (155)
++.++++|.-|+++.+..+..
T Consensus 10 N~~i~t~S~~IAe~~gkrH~~ 30 (167)
T COG3646 10 NKLIVTNSREIAEMVGKRHDN 30 (167)
T ss_pred CCceeecHHHHHHHHhhhhhh
Confidence 556899999999999998887
No 165
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=30.98 E-value=75 Score=15.93 Aligned_cols=33 Identities=24% Similarity=0.239 Sum_probs=16.8
Q ss_pred hCCCceeEecCCCCCChhhhhcCCCCCccceEEe
Q 040899 10 KGIEYEYREQNLLNKGPMLLQMNRVHKKVPVLIH 43 (155)
Q Consensus 10 ~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~~ 43 (155)
.++.+....++............+. ..+|+++.
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~P~~~~ 59 (69)
T cd01659 27 KGVKFEAVDVDEDPALEKELKRYGV-GGVPTLVV 59 (69)
T ss_pred CCcEEEEEEcCCChHHhhHHHhCCC-ccccEEEE
Confidence 3444444444433222222235565 79999985
No 166
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=30.26 E-value=69 Score=20.62 Aligned_cols=20 Identities=30% Similarity=0.423 Sum_probs=17.1
Q ss_pred ChHHhHHHHhCCCceeEecC
Q 040899 1 MRVRIALAEKGIEYEYREQN 20 (155)
Q Consensus 1 ~r~~~~l~~~gi~~~~~~v~ 20 (155)
+|++-+|...||+|+++.+-
T Consensus 15 rka~~~L~~~gi~~~~~~y~ 34 (117)
T COG1393 15 RKALAWLEEHGIEYTFIDYL 34 (117)
T ss_pred HHHHHHHHHcCCCcEEEEee
Confidence 47889999999999988664
No 167
>PRK07650 4-amino-4-deoxychorismate lyase; Provisional
Probab=29.92 E-value=62 Score=24.02 Aligned_cols=54 Identities=13% Similarity=0.106 Sum_probs=35.8
Q ss_pred HHHHhCCCceeEecCCC---CCChhhhhcCCCCCccceEEeCCeeee-ehHHHHHHHHH
Q 040899 6 ALAEKGIEYEYREQNLL---NKGPMLLQMNRVHKKVPVLIHNGKPIC-ESTNIVQYIDE 60 (155)
Q Consensus 6 ~l~~~gi~~~~~~v~~~---~~~~~~~~~~p~~~~vP~l~~~g~~i~-es~aI~~yL~~ 60 (155)
.+...|+++++..+.+. +..+-|.--+.. |.+|+-..++..+. ....+...|.+
T Consensus 212 ~~~~~g~~v~e~~i~~~dL~~adeifl~ns~~-gv~pV~~i~~~~~~g~~g~~~~~l~~ 269 (283)
T PRK07650 212 VLEELGIEVKEGFYTKEELLSADEVFVTNSIQ-EIVPLTRIEERDFPGKVGMVTKRLQN 269 (283)
T ss_pred HHHHcCCeEEEEecCHHHHhhCCEeeeecCcc-cEEEEEEECCEEeCCCCCHHHHHHHH
Confidence 56778999999988765 333444434445 89999998887763 23455555543
No 168
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=29.90 E-value=41 Score=21.45 Aligned_cols=20 Identities=30% Similarity=0.318 Sum_probs=16.8
Q ss_pred ChHHhHHHHhCCCceeEecC
Q 040899 1 MRVRIALAEKGIEYEYREQN 20 (155)
Q Consensus 1 ~r~~~~l~~~gi~~~~~~v~ 20 (155)
+|++-+|...|++|+++.+-
T Consensus 14 rkA~~~L~~~gi~~~~~d~~ 33 (113)
T cd03033 14 ARQKALLEAAGHEVEVRDLL 33 (113)
T ss_pred HHHHHHHHHcCCCcEEeehh
Confidence 46788999999999998774
No 169
>PF11417 Inhibitor_G39P: Loader and inhibitor of phage G40P; InterPro: IPR024424 G39P inhibits the initiation of DNA replication by blocking G40P replicative helicase. G39P has a bipartite stricture consisting of a folded N-terminal domain and an unfolded C-terminal domain. The C-terminal is essential for helicase interaction [].; PDB: 1NO1_B.
Probab=29.79 E-value=1.2e+02 Score=17.68 Aligned_cols=58 Identities=9% Similarity=0.116 Sum_probs=25.8
Q ss_pred ehHHHHHHHHHhCcchHHHHhhc--hHHHHHHHHH-----HHHHHHHHHHhcCCCCcccCCCcChhhhh
Q 040899 50 ESTNIVQYIDEIHTDGREMRAVK--LERQEEMTKE-----FIAILKTLEEELGDKPHFEGENFGFVDVS 111 (155)
Q Consensus 50 es~aI~~yL~~~~~~~~~~~~~~--~~~~~~~~~~-----~~~~l~~le~~L~~~~~l~G~~~t~aD~~ 111 (155)
|..-|+.++...||.+...+... ....+...+. .......+.+++..++| .||+||+.
T Consensus 5 E~~~ll~~I~~aYP~~~~~f~~~~~k~~v~~W~~~L~d~~ye~v~~al~~~i~~~kf----PPsiaeii 69 (71)
T PF11417_consen 5 ETAKLLKLIKAAYPQWAGNFKPTDSKETVDLWYDMLKDYDYEIVMKALKKHIATNKF----PPSIAEII 69 (71)
T ss_dssp HHHHHHHHHHHHST---TT---STHHHHHHHHHHHHTTS-HHHHHHHHHHHHHH-SS-------GGGG-
T ss_pred HHHHHHHHHHHHCCcchhccchhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC----CcCHHHHh
Confidence 56778889999999532222111 1222322222 23444555555544443 57888863
No 170
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=28.98 E-value=47 Score=20.83 Aligned_cols=20 Identities=20% Similarity=0.526 Sum_probs=16.9
Q ss_pred ChHHhHHHHhCCCceeEecC
Q 040899 1 MRVRIALAEKGIEYEYREQN 20 (155)
Q Consensus 1 ~r~~~~l~~~gi~~~~~~v~ 20 (155)
+|++-+|...|++|+++.+.
T Consensus 13 rka~~~L~~~~i~~~~~di~ 32 (105)
T cd03035 13 KKARKWLEARGVAYTFHDYR 32 (105)
T ss_pred HHHHHHHHHcCCCeEEEecc
Confidence 46788899999999998775
No 171
>PF06075 DUF936: Plant protein of unknown function (DUF936); InterPro: IPR010341 This family consists of several hypothetical proteins from plants. The function of this family is unknown.
Probab=28.70 E-value=1e+02 Score=25.82 Aligned_cols=53 Identities=9% Similarity=0.151 Sum_probs=33.1
Q ss_pred HHHHHHHhcCCCCcccCCCcChhhhhHHHHHhHHhhhChhHHHHHHHhcchhhH----Hhhcch
Q 040899 86 ILKTLEEELGDKPHFEGENFGFVDVSLIPLYCWLETECPKIIAWAKRCTQRKSV----SKSLKD 145 (155)
Q Consensus 86 ~l~~le~~L~~~~~l~G~~~t~aD~~~~~~l~~~~~~~p~l~~~~~~~~~~~~~----~~~~~~ 145 (155)
+|..+|+.|+.+ |=......-.|++. ++....++..|++.+.....- .++++.
T Consensus 502 FL~FVE~aLD~g-f~~~~~~~~~~IA~------~LsQLKrVNdWLD~v~~~~~~~~~~~E~ier 558 (579)
T PF06075_consen 502 FLKFVEKALDAG-FKKSRGEDDGQIAG------MLSQLKRVNDWLDEVGSGSNESEELVETIER 558 (579)
T ss_pred HHHHHHHHHhcc-chhcccCCCcchHH------HHHHHHHHHHHHHHhccCCcccccHHHHHHH
Confidence 677888888654 22222233444444 256778899999999886655 555554
No 172
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=28.59 E-value=49 Score=20.45 Aligned_cols=20 Identities=35% Similarity=0.484 Sum_probs=17.1
Q ss_pred ChHHhHHHHhCCCceeEecC
Q 040899 1 MRVRIALAEKGIEYEYREQN 20 (155)
Q Consensus 1 ~r~~~~l~~~gi~~~~~~v~ 20 (155)
+|++-+|...|++|+.+.+.
T Consensus 13 ~ka~~~L~~~~i~~~~idi~ 32 (105)
T cd02977 13 RKALAWLEEHGIEYEFIDYL 32 (105)
T ss_pred HHHHHHHHHcCCCcEEEeec
Confidence 36788899999999998885
No 173
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=28.32 E-value=1.8e+02 Score=22.75 Aligned_cols=136 Identities=14% Similarity=0.202 Sum_probs=68.4
Q ss_pred hHHhHHHHhCCCceeEecC---CCCCChhhhhcCC--------CCCccceEEeCCee-eeehHHHHHHHHHhCcchHHHH
Q 040899 2 RVRIALAEKGIEYEYREQN---LLNKGPMLLQMNR--------VHKKVPVLIHNGKP-ICESTNIVQYIDEIHTDGREMR 69 (155)
Q Consensus 2 r~~~~l~~~gi~~~~~~v~---~~~~~~~~~~~~p--------~~~~vP~l~~~g~~-i~es~aI~~yL~~~~~~~~~~~ 69 (155)
|+.-+.+..||||++..+- ..+..++-+.+.+ . -++.-|.++... -..-...++.+.+..|......
T Consensus 164 rL~~fA~~lgv~fef~~v~~~~~e~l~~~~l~~~~~E~laVn~~-~~Lh~l~~~~~~~~~~~~~~L~~ir~L~P~vvv~~ 242 (374)
T PF03514_consen 164 RLAEFARSLGVPFEFHPVVVESLEDLDPSMLRLRPGEALAVNCM-FQLHHLLDESGALENPRDAFLRVIRSLNPKVVVLV 242 (374)
T ss_pred HHHHHHHHcCccEEEEecccCchhhCCHHHhCccCCcEEEEEee-hhhhhhccccccccchHHHHHHHHHhcCCCEEEEE
Confidence 4555677889999999862 2223233222333 2 233333321111 1123456667777777611111
Q ss_pred hh-----c---hHHHHHHHHHHHHHHHHHHHhcCCCCcccCCCcChhhhhHHHHHhHH--------hhhChhHHHHHHHh
Q 040899 70 AV-----K---LERQEEMTKEFIAILKTLEEELGDKPHFEGENFGFVDVSLIPLYCWL--------ETECPKIIAWAKRC 133 (155)
Q Consensus 70 ~~-----~---~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aD~~~~~~l~~~--------~~~~p~l~~~~~~~ 133 (155)
.. . -....+........|+.+|..+.... .+...+--.++..-+..+ .+.+..+..|..+|
T Consensus 243 E~ea~~n~~~F~~RF~eal~yYsalfdsle~~~~~~~---~~r~~~E~~~~~~eI~niVa~eg~~R~eR~e~~~~W~~r~ 319 (374)
T PF03514_consen 243 EQEADHNSPSFLERFREALHYYSALFDSLEACLPRDS---EERLAVERLFFGREIMNIVACEGEERVERHERLEQWRRRM 319 (374)
T ss_pred eecCCCCCCchHHHHHHHHHHHHHHHHHHhhcCCCCC---HHHHHHHHHHhhhHHHHhhhcccccccccccchhHHHHHH
Confidence 10 1 23455566666777777777764322 222223333344444444 34567788898888
Q ss_pred cchhhHHhh
Q 040899 134 TQRKSVSKS 142 (155)
Q Consensus 134 ~~~~~~~~~ 142 (155)
.. ..|..+
T Consensus 320 ~~-aGF~~~ 327 (374)
T PF03514_consen 320 RR-AGFRPV 327 (374)
T ss_pred Hh-cCCeec
Confidence 75 444433
No 174
>TIGR01121 D_amino_aminoT D-amino acid aminotransferase. Specificity is broad for various D-amino acids, and differs among members of the family; the family is designated equivalog, but with this caveat attached.
Probab=27.72 E-value=65 Score=23.86 Aligned_cols=56 Identities=14% Similarity=0.197 Sum_probs=36.6
Q ss_pred HhHHHHhCCCceeEecCCC---CCChhhhhcCCCCCccceEEeCCeeeee--hHHHHHHHHH
Q 040899 4 RIALAEKGIEYEYREQNLL---NKGPMLLQMNRVHKKVPVLIHNGKPICE--STNIVQYIDE 60 (155)
Q Consensus 4 ~~~l~~~gi~~~~~~v~~~---~~~~~~~~~~p~~~~vP~l~~~g~~i~e--s~aI~~yL~~ 60 (155)
.=.+...|+++++..+++. +..+-|..-+.. +-+|+-..++..+.. ...+++.|.+
T Consensus 209 l~~a~~~g~~v~e~~i~~~el~~ade~fltns~~-gi~PV~~id~~~~~~~~~g~~~~~L~~ 269 (276)
T TIGR01121 209 LACAEENGIPVKEEPFTKEELLNADEVFVSSTTA-EITPVIEIDGQQIGDGKPGPWTRQLQK 269 (276)
T ss_pred HHHHHHCCCeEEEEeCCHHHHhcCCEEEEecCcc-cEEEEEEECCEECCCCCCCHHHHHHHH
Confidence 3356788999999988864 344444434445 889999987766532 2456666544
No 175
>TIGR01122 ilvE_I branched-chain amino acid aminotransferase, group I. Among the class IV aminotransferases are two phylogenetically separable groups of branched-chain amino acid aminotransferase (IlvE). The last common ancestor of the two lineages appears also to have given rise to a family of D-amino acid aminotransferases (DAAT). This model represents the IlvE family more strongly similar to the DAAT family.
Probab=27.48 E-value=64 Score=24.17 Aligned_cols=53 Identities=13% Similarity=0.143 Sum_probs=35.0
Q ss_pred HHHHhCCCceeEecCCC---CCChhhhhcCCCCCccceEEeCCeeeee--hHHHHHHHH
Q 040899 6 ALAEKGIEYEYREQNLL---NKGPMLLQMNRVHKKVPVLIHNGKPICE--STNIVQYID 59 (155)
Q Consensus 6 ~l~~~gi~~~~~~v~~~---~~~~~~~~~~p~~~~vP~l~~~g~~i~e--s~aI~~yL~ 59 (155)
++...|+++++..+++. +..+-|..-+.. |-+|+-..++..+.+ ...+.+.|.
T Consensus 220 la~~~g~~v~e~~i~~~eL~~adevfltns~~-gv~PV~~id~~~~~~~~~g~~~~~l~ 277 (298)
T TIGR01122 220 LAKELGIEVVEQPISREELYTADEAFFTGTAA-EITPIREVDGRKIGNGRRGPVTKKLQ 277 (298)
T ss_pred HHHHcCCcEEEEeCCHHHHhhCCEEEEcCCcc-eEEEEEEECCEECCCCCCChHHHHHH
Confidence 46778999999999875 333344444455 899999988776642 345554444
No 176
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=27.01 E-value=1.4e+02 Score=17.44 Aligned_cols=32 Identities=19% Similarity=0.400 Sum_probs=20.9
Q ss_pred CCCceeEecCCCCCChhhhhcCCCCCccceEEeCC
Q 040899 11 GIEYEYREQNLLNKGPMLLQMNRVHKKVPVLIHNG 45 (155)
Q Consensus 11 gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~~~g 45 (155)
..+++...+|..+.+..+.+.+. .+|+|..+|
T Consensus 26 ~~~~~l~~vDI~~d~~l~~~Y~~---~IPVl~~~~ 57 (81)
T PF05768_consen 26 EFPFELEEVDIDEDPELFEKYGY---RIPVLHIDG 57 (81)
T ss_dssp TSTCEEEEEETTTTHHHHHHSCT---STSEEEETT
T ss_pred hcCceEEEEECCCCHHHHHHhcC---CCCEEEEcC
Confidence 34577777777655444444443 799999866
No 177
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=26.98 E-value=50 Score=20.80 Aligned_cols=21 Identities=19% Similarity=0.276 Sum_probs=17.6
Q ss_pred ChHHhHHHHhCCCceeEecCC
Q 040899 1 MRVRIALAEKGIEYEYREQNL 21 (155)
Q Consensus 1 ~r~~~~l~~~gi~~~~~~v~~ 21 (155)
+|++-+|...|++|+.+.+.-
T Consensus 13 ~ka~~~L~~~~i~~~~idi~~ 33 (111)
T cd03036 13 RKAKKWLDEHGVDYTAIDIVE 33 (111)
T ss_pred HHHHHHHHHcCCceEEecccC
Confidence 367888999999999988764
No 178
>PRK10853 putative reductase; Provisional
Probab=25.14 E-value=57 Score=20.98 Aligned_cols=20 Identities=25% Similarity=0.569 Sum_probs=16.7
Q ss_pred ChHHhHHHHhCCCceeEecC
Q 040899 1 MRVRIALAEKGIEYEYREQN 20 (155)
Q Consensus 1 ~r~~~~l~~~gi~~~~~~v~ 20 (155)
+|++-+|+..|++|+++.+-
T Consensus 14 rkA~~~L~~~~i~~~~~d~~ 33 (118)
T PRK10853 14 KKARRWLEAQGIDYRFHDYR 33 (118)
T ss_pred HHHHHHHHHcCCCcEEeehc
Confidence 47888999999999988663
No 179
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=24.43 E-value=56 Score=20.44 Aligned_cols=20 Identities=35% Similarity=0.529 Sum_probs=14.9
Q ss_pred ChHHhHHHHhCCCceeEecC
Q 040899 1 MRVRIALAEKGIEYEYREQN 20 (155)
Q Consensus 1 ~r~~~~l~~~gi~~~~~~v~ 20 (155)
+|++-+|...|++|+.+.+.
T Consensus 10 rka~~~L~~~gi~~~~~d~~ 29 (110)
T PF03960_consen 10 RKALKWLEENGIEYEFIDYK 29 (110)
T ss_dssp HHHHHHHHHTT--EEEEETT
T ss_pred HHHHHHHHHcCCCeEeehhh
Confidence 47888999999999987764
No 180
>PF01063 Aminotran_4: Aminotransferase class IV; InterPro: IPR001544 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. One of these, called class-IV, currently consists of proteins of about 270 to 415 amino-acid residues that share a few regions of sequence similarity. Surprisingly, the best conserved region does not include the lysine residue to which the pyridoxal-phosphate group is known to be attached, in ilvE, but is located some 40 residues at the C terminus side of the pyridoxal-phosphate-lysine. The D-amino acid transferases (D-AAT), which are among the members of this entry, are required by bacteria to catalyse the synthesis of D-glutamic acid and D-alanine, which are essential constituents of bacterial cell wall and are the building block for other D-amino acids. Despite the difference in the structure of the substrates, D-AATs and L-ATTs have strong similarity [, ]. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1EKV_A 2HGX_A 1EKP_A 1KTA_B 1KT8_B 2A1H_B 2HDK_A 2HGW_B 1EKF_B 2HG8_A ....
Probab=24.21 E-value=57 Score=23.10 Aligned_cols=56 Identities=23% Similarity=0.240 Sum_probs=37.9
Q ss_pred HhHHHHhCCCceeEecCCCC---CChhhhhcCCCCCccceEEeCCeeeeehHHHHHHHHHh
Q 040899 4 RIALAEKGIEYEYREQNLLN---KGPMLLQMNRVHKKVPVLIHNGKPICESTNIVQYIDEI 61 (155)
Q Consensus 4 ~~~l~~~gi~~~~~~v~~~~---~~~~~~~~~p~~~~vP~l~~~g~~i~es~aI~~yL~~~ 61 (155)
.-++...|++++...+...+ ..+-|. .|...|-.|+-..++..+. ...|.+-|-+.
T Consensus 172 l~~~~~~g~~v~e~~i~~~~L~~ade~fl-~ns~~gi~pV~~i~~~~~~-~~p~~~~L~~~ 230 (231)
T PF01063_consen 172 LELAKELGIPVEERPITLDDLQQADEVFL-TNSLRGIRPVKSIDGRSFG-PGPITRRLQEA 230 (231)
T ss_dssp HHHHHHTTSEEEEE-BBHHHHHTHSEEEE-EETTTEEEEEEEETTEEST-THHHHHHHHHH
T ss_pred HHHHHhCCCCcEEEEeCHHHhhhhhheEE-ecchhhEEEEEEECCEECC-CCHHHHHHHHh
Confidence 34455689999999887652 223333 3443388999988998887 88888877654
No 181
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=23.62 E-value=2.1e+02 Score=18.32 Aligned_cols=49 Identities=8% Similarity=0.054 Sum_probs=36.5
Q ss_pred ccCCCcChhhhhHHHHHhHH-hhhChhHHHHHHHhcc--hhhHHhhcchhhH
Q 040899 100 FEGENFGFVDVSLIPLYCWL-ETECPKIIAWAKRCTQ--RKSVSKSLKDEKK 148 (155)
Q Consensus 100 l~G~~~t~aD~~~~~~l~~~-~~~~p~l~~~~~~~~~--~~~~~~~~~~~~~ 148 (155)
..|......|+-.|..|..- ..-...+..|+.++.. .|..+....+.++
T Consensus 60 ~l~~~~~~pdlepw~ALce~rlGl~s~l~~rl~rla~sg~p~lq~Faag~re 111 (115)
T TIGR02508 60 QLGNKLCYPDLEPWLALCEWRLGLGSALESRLNRLAASGDPRLQTFVAGMRE 111 (115)
T ss_pred HhcCCCCCchHHHHHHHHHHhhccHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 45666789999877777765 6667788999988876 7888877776544
No 182
>PRK12400 D-amino acid aminotransferase; Reviewed
Probab=23.21 E-value=1e+02 Score=23.02 Aligned_cols=55 Identities=9% Similarity=0.088 Sum_probs=35.8
Q ss_pred HHHHhCCCceeEecCCC---CCChhhhhcCCCCCccceEEeCCeeeee--hHHHHHHHHHh
Q 040899 6 ALAEKGIEYEYREQNLL---NKGPMLLQMNRVHKKVPVLIHNGKPICE--STNIVQYIDEI 61 (155)
Q Consensus 6 ~l~~~gi~~~~~~v~~~---~~~~~~~~~~p~~~~vP~l~~~g~~i~e--s~aI~~yL~~~ 61 (155)
.+...|+++++..+++. +..+-|. .|...+-+|+-..++..+.+ ...+.+.|.+.
T Consensus 218 la~~~gi~v~E~~i~~~eL~~Adevfl-tns~~gv~PV~~i~~~~~~~~~~g~~t~~l~~~ 277 (290)
T PRK12400 218 LAKTLRIPVQEELFSVRDVYQADECFF-TGTTIEILPMTHLDGTAIQDGQVGPITKMLQRS 277 (290)
T ss_pred HHHHcCCcEEEEeCCHHHHHhCCeeeE-ccCcceEEEEEEECCEECCCCCcCHHHHHHHHH
Confidence 55677999999999865 3333444 44433889999888776643 35666655443
No 183
>PRK10026 arsenate reductase; Provisional
Probab=23.06 E-value=66 Score=21.55 Aligned_cols=20 Identities=10% Similarity=-0.077 Sum_probs=16.9
Q ss_pred ChHHhHHHHhCCCceeEecC
Q 040899 1 MRVRIALAEKGIEYEYREQN 20 (155)
Q Consensus 1 ~r~~~~l~~~gi~~~~~~v~ 20 (155)
+|++-+|...|++|+++.+-
T Consensus 16 RKA~~wL~~~gi~~~~~d~~ 35 (141)
T PRK10026 16 RNTLEMIRNSGTEPTIIHYL 35 (141)
T ss_pred HHHHHHHHHCCCCcEEEeee
Confidence 47888999999999998763
No 184
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=22.06 E-value=1.3e+02 Score=19.79 Aligned_cols=21 Identities=10% Similarity=0.186 Sum_probs=17.6
Q ss_pred ChHHhHHHHhCCCceeEecCC
Q 040899 1 MRVRIALAEKGIEYEYREQNL 21 (155)
Q Consensus 1 ~r~~~~l~~~gi~~~~~~v~~ 21 (155)
+|++-+|...||+|+++.+.-
T Consensus 14 rkA~~~L~~~~i~~~~~d~~~ 34 (132)
T PRK13344 14 KKAKTWLNAHQLSYKEQNLGK 34 (132)
T ss_pred HHHHHHHHHcCCCeEEEECCC
Confidence 467888999999999998853
No 185
>PRK12559 transcriptional regulator Spx; Provisional
Probab=21.61 E-value=1.2e+02 Score=19.91 Aligned_cols=21 Identities=19% Similarity=0.254 Sum_probs=17.3
Q ss_pred ChHHhHHHHhCCCceeEecCC
Q 040899 1 MRVRIALAEKGIEYEYREQNL 21 (155)
Q Consensus 1 ~r~~~~l~~~gi~~~~~~v~~ 21 (155)
+|+.-+|...|++|+.+.+.-
T Consensus 14 rkA~~~L~~~gi~~~~~di~~ 34 (131)
T PRK12559 14 RKAKAWLEENQIDYTEKNIVS 34 (131)
T ss_pred HHHHHHHHHcCCCeEEEEeeC
Confidence 367788999999999988753
No 186
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=21.59 E-value=77 Score=20.04 Aligned_cols=20 Identities=25% Similarity=0.267 Sum_probs=16.7
Q ss_pred ChHHhHHHHhCCCceeEecC
Q 040899 1 MRVRIALAEKGIEYEYREQN 20 (155)
Q Consensus 1 ~r~~~~l~~~gi~~~~~~v~ 20 (155)
+|++-+|...|++|+.+.+.
T Consensus 14 ~ka~~~L~~~gi~~~~idi~ 33 (115)
T cd03032 14 RKAKQWLEEHQIPFEERNLF 33 (115)
T ss_pred HHHHHHHHHCCCceEEEecC
Confidence 36778899999999998774
No 187
>PRK07849 4-amino-4-deoxychorismate lyase; Provisional
Probab=21.39 E-value=1.2e+02 Score=22.80 Aligned_cols=53 Identities=23% Similarity=0.356 Sum_probs=34.8
Q ss_pred HHHHhCCCceeEecCCCC---CChhhhhcCCCCCccceEEeCCeeeeehHHHHHHHHH
Q 040899 6 ALAEKGIEYEYREQNLLN---KGPMLLQMNRVHKKVPVLIHNGKPICESTNIVQYIDE 60 (155)
Q Consensus 6 ~l~~~gi~~~~~~v~~~~---~~~~~~~~~p~~~~vP~l~~~g~~i~es~aI~~yL~~ 60 (155)
.+...|+++++..+.+.+ ..+-|. .|...|-+|+...+|..+.. ..+.+-|.+
T Consensus 227 ~~~~~g~~v~er~i~~~eL~~Adevfl-tns~~gi~pV~~id~~~~~~-~~~~~~l~~ 282 (292)
T PRK07849 227 VAREKGWDCEYRALRPADLFAADGVWL-VSSVRLAARVHTLDGRPLPR-DPLADELTE 282 (292)
T ss_pred HHHHcCCceEEEECCHHHHhhCCEEEE-ecCcceEEEEEEECCEECCC-ChHHHHHHH
Confidence 456679999999998752 333344 34433899999988877654 355555543
No 188
>PF07862 Nif11: Nitrogen fixation protein of unknown function; InterPro: IPR012903 This domain is found in the cyanobacteria, and the nitrogen-fixing proteobacterium Azotobacter vinelandii and may be involved in nitrogen fixation, but no role has been assigned [].
Probab=21.27 E-value=1e+02 Score=16.08 Aligned_cols=22 Identities=14% Similarity=0.282 Sum_probs=17.0
Q ss_pred hhHHHHHHHhcchhhHHhhcch
Q 040899 124 PKIIAWAKRCTQRKSVSKSLKD 145 (155)
Q Consensus 124 p~l~~~~~~~~~~~~~~~~~~~ 145 (155)
..+.+++.++.+.|.++.-+..
T Consensus 4 ~~l~~Fl~~~~~d~~l~~~l~~ 25 (49)
T PF07862_consen 4 ESLKAFLEKVKSDPELREQLKA 25 (49)
T ss_pred HHHHHHHHHHhcCHHHHHHHHh
Confidence 4578888999888888875554
No 189
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=20.95 E-value=82 Score=20.59 Aligned_cols=20 Identities=20% Similarity=0.237 Sum_probs=17.0
Q ss_pred ChHHhHHHHhCCCceeEecC
Q 040899 1 MRVRIALAEKGIEYEYREQN 20 (155)
Q Consensus 1 ~r~~~~l~~~gi~~~~~~v~ 20 (155)
+|++-+|...||+|+.+.+.
T Consensus 14 ~ka~~~L~~~gi~~~~idi~ 33 (131)
T PRK01655 14 RKAKAWLEEHDIPFTERNIF 33 (131)
T ss_pred HHHHHHHHHcCCCcEEeecc
Confidence 36788899999999998875
No 190
>COG1535 EntB Isochorismate hydrolase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=20.66 E-value=2e+02 Score=20.49 Aligned_cols=39 Identities=13% Similarity=0.126 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHhcCC-CCcccCCCcChhhhhHHHHHhHH
Q 040899 79 MTKEFIAILKTLEEELGD-KPHFEGENFGFVDVSLIPLYCWL 119 (155)
Q Consensus 79 ~~~~~~~~l~~le~~L~~-~~~l~G~~~t~aD~~~~~~l~~~ 119 (155)
...++-...++.+.+..+ ++|++|| .+||++..-....+
T Consensus 151 VyaHigcl~TA~dAFm~diqpfmV~D--AlaDfs~~~H~msL 190 (218)
T COG1535 151 VYAHIGCLTTATDAFMRDIQPFMVAD--ALADFSEEEHRMSL 190 (218)
T ss_pred hhhhhhhhhhHHHHHHhcCcceeehh--hhhhccHHHHHHHH
Confidence 344455555566666654 6899998 68898887766654
No 191
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=20.35 E-value=1.1e+02 Score=21.53 Aligned_cols=20 Identities=30% Similarity=0.396 Sum_probs=17.4
Q ss_pred CCeeeeehHHHHHHHHHhCc
Q 040899 44 NGKPICESTNIVQYIDEIHT 63 (155)
Q Consensus 44 ~g~~i~es~aI~~yL~~~~~ 63 (155)
.+..|+||..|-+|+.+.|+
T Consensus 154 ad~lIaDs~~I~~y~~~~y~ 173 (185)
T PF09314_consen 154 ADRLIADSKGIQDYIKERYG 173 (185)
T ss_pred CCEEEEcCHHHHHHHHHHcC
Confidence 45679999999999999887
Done!