BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>040903
MKGREAKGAPPADLLVCFPSRAHLTLMPKPLCSPARPAEANKRINHQHHSQSQHQHPHHH
HQHHLKKLNIKGAGHASPLMWAKTKPTGPEIAEPTSPKVTCAGQIKVRPKANSCKSWQSV
MEEIERIHNNRNKHKNKRPSWAESIGLKKEVMQFLTCLKNIRFDFRCFGAFPRADITTDD
EDDEDEDQYHESNHLGVEGSDGNTDQASSRTVFSKWFMVLQENQNNCYYKEEKERSGSVE
DSSAAAPAAPPPNALLLMRCRSAPAKSRFEDKAAEKEEEDKEDDDHEEEEEEEEVTQVKK
TKNLKSLMEEEKRNNKENLVVMAYDTDFYKISSDVAKETWIVDGMKDLLSRSRSWKR

High Scoring Gene Products

Symbol, full name Information P value
AT1G78110 protein from Arabidopsis thaliana 2.6e-54
AT1G22230 protein from Arabidopsis thaliana 4.5e-51

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  040903
        (357 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2194729 - symbol:AT1G78110 "AT1G78110" species...   561  2.6e-54   1
TAIR|locus:2015041 - symbol:AT1G22230 species:3702 "Arabi...   256  4.5e-51   3


>TAIR|locus:2194729 [details] [associations]
            symbol:AT1G78110 "AT1G78110" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
            "nucleus" evidence=ISM] [GO:0008150 "biological_process"
            evidence=ND] [GO:0005886 "plasma membrane" evidence=IDA]
            EMBL:CP002684 GO:GO:0005886 EMBL:AC012680 ProtClustDB:CLSN2679493
            EMBL:BT015806 EMBL:BT020193 EMBL:AK230238 IPI:IPI00534778
            PIR:C96810 RefSeq:NP_177935.1 UniGene:At.50044
            EnsemblPlants:AT1G78110.1 GeneID:844147 KEGG:ath:AT1G78110
            TAIR:At1g78110 HOGENOM:HOG000243092 InParanoid:Q9C9S1 OMA:TEKETEH
            PhylomeDB:Q9C9S1 Genevestigator:Q9C9S1 Uniprot:Q9C9S1
        Length = 342

 Score = 561 (202.5 bits), Expect = 2.6e-54, P = 2.6e-54
 Identities = 136/297 (45%), Positives = 168/297 (56%)

Query:    72 GAGHASPLMWAKTKPT----GPEIAEPTSPKVTCAGQIKVRPK--ANSCKSWQSVMEEIE 125
             G GH SP++WAK   +    G EIAEPTSPKVTCAGQIKVRP       K+WQSVMEEIE
Sbjct:    66 GGGHGSPVLWAKQASSKNMGGDEIAEPTSPKVTCAGQIKVRPSKCGGRGKNWQSVMEEIE 125

Query:   126 RIXXXXXXXXXXXPSWAESIGLKKEVMQFLTCLKNIRFDFRCFGAFPRADITTXXXXXXX 185
             RI            S ++  GLKK+VM FLTCL+NI+FDFRCFG F  AD+T+       
Sbjct:   126 RIHDNR--------SQSKFFGLKKDVMGFLTCLRNIKFDFRCFGDFRHADVTSDDDEEED 177

Query:   186 XXQYHESNHLGVEGSDGNTDQASSRTVFSKWFMVLQENQNNCYYKEEKERSGSVEDSSXX 245
                  E     VEG +    + +S+TVFSKWFMVLQE QNN   K++ + +   ++    
Sbjct:   178 DDDDEEEEV--VEGEE----EENSKTVFSKWFMVLQEEQNN---KDDDKNNNKCDEKRDL 228

Query:   246 XXXXXXXX-----XXXXMRCRSAPAKSRFXXXXXXXXXXXXXXXXXXXXXXXXXVTQVK- 299
                              MRCRSAPAKS                            T +K 
Sbjct:   229 EDTETEPAVPPPNALLLMRCRSAPAKSWLEERMKVKTEQEKREEQKEEKETEDQETSMKT 288

Query:   300 KTKNLKSLMEEEKRNNKENLVVMAYDTDFYKISSDVAKETWIVDGMKDLLSRSRSWK 356
             K K+L+SLMEEEK      LV+M YDT+FY++SSD+AKETW+V G++D LSRSRSWK
Sbjct:   289 KKKDLRSLMEEEKME----LVLMRYDTEFYRLSSDIAKETWVVGGIQDPLSRSRSWK 341

 Score = 391 (142.7 bits), Expect = 2.7e-36, P = 2.7e-36
 Identities = 94/186 (50%), Positives = 115/186 (61%)

Query:     2 KGREAKGAPPADLLVCFPSRAHLTLMPKPLCSPARPAEA--NKRINXXXXXXXXXXXXXX 59
             +G  + G   ADLLVCFPSR HL L PKP+CSP+RP+++  N+R +              
Sbjct:     9 RGSSSSGYS-ADLLVCFPSRTHLALTPKPICSPSRPSDSSTNRRPHHRRQ---------- 57

Query:    60 XXXXXLKKLNIKGAG-HASPLMWAKTKPT----GPEIAEPTSPKVTCAGQIKVRPK--AN 112
                  L KL+  G G H SP++WAK   +    G EIAEPTSPKVTCAGQIKVRP     
Sbjct:    58 -----LSKLSGGGGGGHGSPVLWAKQASSKNMGGDEIAEPTSPKVTCAGQIKVRPSKCGG 112

Query:   113 SCKSWQSVMEEIERIXXXXXXXXXXXPSWAESIGLKKEVMQFLTCLKNIRFDFRCFGAFP 172
               K+WQSVMEEIERI            S ++  GLKK+VM FLTCL+NI+FDFRCFG F 
Sbjct:   113 RGKNWQSVMEEIERIHDNR--------SQSKFFGLKKDVMGFLTCLRNIKFDFRCFGDFR 164

Query:   173 RADITT 178
              AD+T+
Sbjct:   165 HADVTS 170


>TAIR|locus:2015041 [details] [associations]
            symbol:AT1G22230 species:3702 "Arabidopsis thaliana"
            [GO:0005634 "nucleus" evidence=ISM] EMBL:CP002684 EMBL:AY735521
            EMBL:AY773817 IPI:IPI00541102 RefSeq:NP_173642.1 UniGene:At.50935
            UniGene:At.68814 EnsemblPlants:AT1G22230.1 GeneID:838828
            KEGG:ath:AT1G22230 TAIR:At1g22230 eggNOG:NOG250287
            InParanoid:Q5XVK1 OMA:HHRRSIS PhylomeDB:Q5XVK1
            ProtClustDB:CLSN2679493 Genevestigator:Q5XVK1 Uniprot:Q5XVK1
        Length = 314

 Score = 256 (95.2 bits), Expect = 4.5e-51, Sum P(3) = 4.5e-51
 Identities = 67/161 (41%), Positives = 83/161 (51%)

Query:   198 EGSDGNTDQ-ASSRTVFSKWFMVLQENQNNCYYKEEKERSGSVEDSSXXXXXXXXXXXXX 256
             E  D   D+  SS TVFSKW MVL E QNN     E+   G     S             
Sbjct:   163 EEEDEEEDEDESSGTVFSKWLMVLHEKQNN-----EECVDGKENVFSDVETAVPPPNALL 217

Query:   257 XMRCRSAPAKSRFXXXXXXXXXXXXXXXXXXXXXXXXXVTQVKKTKNLKSLMEEEKRNNK 316
              MRCRSAP K+ +                           +V   K+L+SLMEEEK   K
Sbjct:   218 LMRCRSAPVKN-WSEEKKEETEEGDNRVKQSGEEEEEEKDRVGNKKDLRSLMEEEK---K 273

Query:   317 ENLVVMAYDTDFYKISSDVAKETWIVDGMKDLLSRSRSWKR 357
              NLVVM YDT++YK+S+D+AKETW+V G++D L RSRSWK+
Sbjct:   274 MNLVVMNYDTNYYKLSNDIAKETWVVGGIQDPLFRSRSWKK 314

 Score = 211 (79.3 bits), Expect = 4.5e-51, Sum P(3) = 4.5e-51
 Identities = 49/92 (53%), Positives = 61/92 (66%)

Query:    88 GPEIAE-PTSPKVTCAGQIKVRP--KANSCKSWQSVMEEIERIXXXXXXXXXXXPSWAES 144
             G E+ E PTSPKVTCAGQIKVR   +    K+WQS+M EIE+I            S ++ 
Sbjct:    70 GREVVEEPTSPKVTCAGQIKVRSSKRDGGGKNWQSLMAEIEKIHRSK--------SESKF 121

Query:   145 IGLKKEVMQFLTCLKNIRFDFRCFGAFPRADI 176
              G+K++VM FLTCL++  FDFRCFGAFP  DI
Sbjct:   122 FGIKRDVMGFLTCLRD--FDFRCFGAFPPVDI 151

 Score = 92 (37.4 bits), Expect = 4.5e-51, Sum P(3) = 4.5e-51
 Identities = 22/46 (47%), Positives = 30/46 (65%)

Query:     1 MKGREAKGAP-PADLLVCFPSRAHLTLMPKPLCSPARPAEANKRIN 45
             +KG   K +   ADL+VCFPSRAHL+L  K + SP+  +  N+R N
Sbjct:     2 IKGGGGKSSGYSADLMVCFPSRAHLSLPSKSISSPS--SSFNRRQN 45


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.315   0.129   0.388    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      357       279   0.00081  115 3  11 22  0.39    34
                                                     33  0.41    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  618 (66 KB)
  Total size of DFA:  227 KB (2123 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  20.08u 0.14s 20.22t   Elapsed:  00:00:01
  Total cpu time:  20.08u 0.14s 20.22t   Elapsed:  00:00:01
  Start:  Mon May 20 22:22:04 2013   End:  Mon May 20 22:22:05 2013

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