Query 040903
Match_columns 357
No_of_seqs 57 out of 59
Neff 2.5
Searched_HMMs 29240
Date Mon Mar 25 21:04:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040903.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040903hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2lkw_A Membrane fusion protein 74.9 1.1 3.8E-05 29.2 1.2 16 243-258 6-21 (26)
2 1gff_3 Bacteriophage G4 capsid 19.8 29 0.00099 22.7 0.5 7 339-345 17-23 (26)
3 1m06_J J protein, small core p 18.3 29 0.00098 22.7 0.3 7 339-345 16-22 (26)
4 3hxi_C Eukaryotic translation 15.8 40 0.0014 21.2 0.5 11 255-265 11-21 (21)
5 2c5m_A CTP synthase; cytidine 15.4 49 0.0017 31.9 1.1 17 149-165 176-192 (294)
6 2r1f_A Protein YCEG, predicted 13.5 62 0.0021 29.8 1.3 18 22-39 205-222 (270)
7 2vo1_A CTP synthase 1; pyrimid 12.5 57 0.0019 31.4 0.7 16 150-165 177-192 (295)
8 4iiw_A LMO1499 protein; struct 12.4 57 0.0019 31.0 0.7 18 22-39 288-305 (349)
9 3ry0_A Putative tautomerase; o 11.7 80 0.0027 21.9 1.1 18 327-344 37-54 (65)
10 2byk_A Chrac-16; nucleosome sl 10.1 1.3E+02 0.0043 25.5 2.0 81 118-198 55-135 (140)
No 1
>2lkw_A Membrane fusion protein P15; viral protein; NMR {Baboon orthoreovirus}
Probab=74.86 E-value=1.1 Score=29.19 Aligned_cols=16 Identities=50% Similarity=0.918 Sum_probs=12.7
Q ss_pred CCCCCCCCCCcceehh
Q 040903 243 SAAAPAAPPPNALLLM 258 (357)
Q Consensus 243 s~~~~~vPPpNALLLM 258 (357)
|+..|.+|||||++-+
T Consensus 6 sivqppapppnafvei 21 (26)
T 2lkw_A 6 SIVQPPAPPPNAFVEI 21 (26)
T ss_pred ccccCCCcCCCeeEEE
Confidence 5567899999998754
No 2
>1gff_3 Bacteriophage G4 capsid proteins GPF, GPG, GPJ; coat protein, icosahedral virus; 3.00A {Enterobacteria phage G4}
Probab=19.85 E-value=29 Score=22.67 Aligned_cols=7 Identities=43% Similarity=1.032 Sum_probs=4.4
Q ss_pred eeeecCC
Q 040903 339 TWIVDGM 345 (357)
Q Consensus 339 TWvVGG~ 345 (357)
-|+|||.
T Consensus 17 lwyvggt 23 (26)
T 1gff_3 17 LWYVGGT 23 (26)
T ss_pred EEEecce
Confidence 4666665
No 3
>1m06_J J protein, small core protein; bacteriophage, virion; HET: 3DR; 3.50A {Enterobacteria phage ALPHA3}
Probab=18.30 E-value=29 Score=22.72 Aligned_cols=7 Identities=43% Similarity=0.995 Sum_probs=4.1
Q ss_pred eeeecCC
Q 040903 339 TWIVDGM 345 (357)
Q Consensus 339 TWvVGG~ 345 (357)
-|+|||.
T Consensus 16 lwyvggt 22 (26)
T 1m06_J 16 LWYVGGS 22 (26)
T ss_dssp CCCSSSC
T ss_pred EEEEcce
Confidence 3666665
No 4
>3hxi_C Eukaryotic translation initiation factor 4E- binding protein 1; protein-mRNA CAP complex, acetylation, phosphoprotein, protein synthesis inhibitor; HET: GTG; 1.80A {Homo sapiens} PDB: 3hxg_C*
Probab=15.78 E-value=40 Score=21.22 Aligned_cols=11 Identities=45% Similarity=1.044 Sum_probs=8.4
Q ss_pred eehhhcccCcc.....
Q 040903 255 LLLMRCRSAPA..... 265 (357)
Q Consensus 255 LLLMRCRSAPA..... 265 (357)
..||.||..|.
T Consensus 11 ~fLl~~rnSP~..... 21 (21)
T 3hxi_C 11 KFLMECRNSPVxxxxx 26 (26)
T ss_pred HHHHHhccCCC.....
Confidence 35889998884
No 5
>2c5m_A CTP synthase; cytidine 5-prime triphosphate synthetase, CTP synthetase, UTP, glutamine, amidotransferase, ligase, phosphorylation; 2.80A {Homo sapiens} PDB: 2vo1_A 3ihl_A*
Probab=15.43 E-value=49 Score=31.86 Aligned_cols=17 Identities=24% Similarity=0.595 Sum_probs=15.2
Q ss_pred hhhhHHHHhhhcccccc
Q 040903 149 KEVMQFLTCLKNIRFDF 165 (357)
Q Consensus 149 kd~m~FL~~Lr~~Rf~~ 165 (357)
-+-||||.|+|.||+++
T Consensus 176 IES~PFlEAiRQ~~~~~ 192 (294)
T 2c5m_A 176 IESMPFIEAFRQFQFKV 192 (294)
T ss_dssp STTHHHHHHHHTTTTTS
T ss_pred hcccHHHHHHHHHHHHh
Confidence 35699999999999998
No 6
>2r1f_A Protein YCEG, predicted aminodeoxychorismate lyase; structural genomics, unknown function, PFAM 02618, PSI-2, PR structure initiative; 2.21A {Escherichia coli}
Probab=13.54 E-value=62 Score=29.83 Aligned_cols=18 Identities=17% Similarity=0.266 Sum_probs=14.6
Q ss_pred cccccCCCCcCCCCCCcc
Q 040903 22 AHLTLMPKPLCSPARPAE 39 (357)
Q Consensus 22 ~hl~LmpKpIcSPsR~~~ 39 (357)
.|--|.|-|||+||+.+-
T Consensus 205 ~~~GLPPgPI~~Pg~~ai 222 (270)
T 2r1f_A 205 TITGLPPGAIATPGADSL 222 (270)
T ss_dssp TSSSCCSSCSSCCCHHHH
T ss_pred ccCCCCCCCCCCCCHHHH
Confidence 345799999999999763
No 7
>2vo1_A CTP synthase 1; pyrimidine biosynthesis, glutamine amidotransferase, phosphorylation, amidotransferase, cytidine 5-prime triphos synthetase, UTP; 2.8A {Homo sapiens} SCOP: c.37.1.10 PDB: 3ihl_A*
Probab=12.51 E-value=57 Score=31.38 Aligned_cols=16 Identities=25% Similarity=0.675 Sum_probs=14.6
Q ss_pred hhhHHHHhhhcccccc
Q 040903 150 EVMQFLTCLKNIRFDF 165 (357)
Q Consensus 150 d~m~FL~~Lr~~Rf~~ 165 (357)
+-||||.|+|.||+++
T Consensus 177 Es~PFlEAiRQ~~~~~ 192 (295)
T 2vo1_A 177 ESMPFIEAFRQFQFKV 192 (295)
T ss_dssp GGHHHHHHHHHHHHHS
T ss_pred cccHHHHHHHHHHHhh
Confidence 4599999999999988
No 8
>4iiw_A LMO1499 protein; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PGE; 2.60A {Listeria monocytogenes}
Probab=12.45 E-value=57 Score=30.98 Aligned_cols=18 Identities=17% Similarity=0.303 Sum_probs=14.7
Q ss_pred cccccCCCCcCCCCCCcc
Q 040903 22 AHLTLMPKPLCSPARPAE 39 (357)
Q Consensus 22 ~hl~LmpKpIcSPsR~~~ 39 (357)
.|--|.|-|||+||+.+-
T Consensus 288 ~~~GLPPgPI~~Pg~~ai 305 (349)
T 4iiw_A 288 KNNGLPPGPISNSGDSSM 305 (349)
T ss_dssp TSCSSCSSCSSCCCHHHH
T ss_pred CcCCCCCCcccCcCHHHH
Confidence 445799999999999763
No 9
>3ry0_A Putative tautomerase; oxalocrotonate tautomerase family, isomerase; 1.40A {Streptomyces achromogenes}
Probab=11.70 E-value=80 Score=21.88 Aligned_cols=18 Identities=28% Similarity=0.567 Sum_probs=0.0
Q ss_pred CceecccccccceeeecC
Q 040903 327 DFYKISSDVAKETWIVDG 344 (357)
Q Consensus 327 dF~klS~DIAKETWvVGG 344 (357)
+.|-+=.++..+.|.+||
T Consensus 37 ~v~V~i~e~~~~~w~~gG 54 (65)
T 3ry0_A 37 AVRVIVEETPPERWFVGG 54 (65)
T ss_dssp GCEEEEEEECGGGCEETT
T ss_pred cEEEEEEEcCHHHeeECC
No 10
>2byk_A Chrac-16; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_A
Probab=10.11 E-value=1.3e+02 Score=25.54 Aligned_cols=81 Identities=12% Similarity=0.174 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhccccccCCcchhHHhhhhhhhhhHHHHhhhcccccceeccCCCCCcccCCCCCccchhhhhhcccCCC
Q 040903 118 QSVMEEIERIHNNRNKHKNKRPSWAESIGLKKEVMQFLTCLKNIRFDFRCFGAFPRADITTDDEDDEDEDQYHESNHLGV 197 (357)
Q Consensus 118 ~svmeEierih~~rk~~k~~~~~W~e~lGikkd~m~FL~~Lr~~Rf~~rCFGsfp~a~~~t~d~ddd~e~~~~~~~~~g~ 197 (357)
+.++++.-.....++++|..++.=|...=-+-+.+.||.-+--.+.-++=|-......-..++++|||+++++.+++.+.
T Consensus 55 ~~Lt~~A~~~a~~~~kRKtI~~~Dl~~AV~~~e~~dFL~divP~ki~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (140)
T 2byk_A 55 RHLAGAAYTEEFGQRPGEALKYEHLSQVVNKNKNLEFLLQIVPQKIRVHQFQEMLRLNRSAGSDDDDDDDDDDDEEESES 134 (140)
T ss_dssp HHHHHHHHHHHHTTCCSCEECHHHHHHHHHTCSTTGGGTTTSCSCC----------------------------------
T ss_pred HHHHHHHHHHHHHhcCCcccCHHHHHHHHhcCchhhhHhccccchhhHHHHHHHHHhcccccccccccccccchhhhhcc
Q ss_pred C
Q 040903 198 E 198 (357)
Q Consensus 198 e 198 (357)
+
T Consensus 135 ~ 135 (140)
T 2byk_A 135 E 135 (140)
T ss_dssp -
T ss_pred c
Done!