Query 040903
Match_columns 357
No_of_seqs 57 out of 59
Neff 2.5
Searched_HMMs 13730
Date Mon Mar 25 21:04:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040903.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/040903hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1yira2 d.41.2.2 (A:4-144) Nic 25.0 12 0.00089 29.6 1.4 21 141-164 74-95 (141)
2 d2trcp_ c.47.1.6 (P:) Phosduci 19.3 14 0.001 30.1 0.6 25 318-342 100-124 (217)
3 d1q0xl2 b.1.1.2 (L:108-212) Im 17.2 28 0.0021 24.6 1.9 27 316-345 20-46 (102)
4 d2mhaa1 b.1.1.2 (A:182-270) Cl 15.0 39 0.0029 23.5 2.2 27 316-345 15-41 (89)
5 d1no5a_ d.218.1.5 (A:) Hypothe 13.7 51 0.0037 23.5 2.5 37 145-182 2-41 (100)
6 d1s1ma2 c.37.1.10 (A:1-266) CT 11.5 25 0.0018 31.1 0.1 15 151-165 150-164 (266)
7 d1vcoa2 c.37.1.10 (A:11-282) C 11.2 27 0.0019 31.0 0.2 16 150-165 150-165 (272)
8 d2ff4a1 a.4.6.1 (A:10-104) Pro 10.3 35 0.0025 23.7 0.6 11 162-172 1-11 (95)
9 d1txga1 a.100.1.6 (A:181-335) 10.2 20 0.0015 28.1 -0.8 52 99-161 73-137 (155)
10 d1jjcb2 a.6.1.1 (B:400-474) Do 9.7 66 0.0048 22.3 1.9 20 111-130 51-70 (75)
No 1
>d1yira2 d.41.2.2 (A:4-144) Nicotinate phosphoribosyltransferase, N-terminal domain {Pseudomonas aeruginosa [TaxId: 287]}
Probab=25.00 E-value=12 Score=29.57 Aligned_cols=21 Identities=33% Similarity=0.596 Sum_probs=16.0
Q ss_pred hHHhhh-hhhhhhHHHHhhhccccc
Q 040903 141 WAESIG-LKKEVMQFLTCLKNIRFD 164 (357)
Q Consensus 141 W~e~lG-ikkd~m~FL~~Lr~~Rf~ 164 (357)
||+.++ |+.+ ||+-|+++||+
T Consensus 74 yL~~~~~f~~~---fldyL~~frf~ 95 (141)
T d1yira2 74 FLERIPFLAPD---FIRFLGLFRFN 95 (141)
T ss_dssp HHHTSTTSCHH---HHHHHHHCCCC
T ss_pred HHHcCCCCCHH---HHHHHHhCCCC
Confidence 888888 4555 77777888876
No 2
>d2trcp_ c.47.1.6 (P:) Phosducin {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=19.32 E-value=14 Score=30.14 Aligned_cols=25 Identities=20% Similarity=0.130 Sum_probs=13.4
Q ss_pred ceEEEeecCCceecccccccceeee
Q 040903 318 NLVVMAYDTDFYKISSDVAKETWIV 342 (357)
Q Consensus 318 ~LV~M~y~~dF~klS~DIAKETWvV 342 (357)
.++-+...-+|...-..-.+.+|||
T Consensus 100 ~v~~i~~~~~f~~~v~~~~~~~~Vv 124 (217)
T d2trcp_ 100 FVYELETGEQFLETIEKEQKVTTIV 124 (217)
T ss_dssp SEEECCSHHHHHHHHHHSCTTCEEE
T ss_pred eEEEcCCHHHHHHHHHhcCCCCeEE
Confidence 4444444445555555555666765
No 3
>d1q0xl2 b.1.1.2 (L:108-212) Immunoglobulin light chain lambda constant domain, CL-lambda {Human (Homo sapiens) [TaxId: 9606]}
Probab=17.19 E-value=28 Score=24.60 Aligned_cols=27 Identities=33% Similarity=0.597 Sum_probs=21.6
Q ss_pred ccceEEEeecCCceecccccccceeeecCC
Q 040903 316 KENLVVMAYDTDFYKISSDVAKETWIVDGM 345 (357)
Q Consensus 316 ke~LV~M~y~~dF~klS~DIAKETWvVGG~ 345 (357)
.+++.|++...+|| -+.++=||.++|.
T Consensus 20 ~~~~tl~C~v~~f~---P~~i~v~W~~~g~ 46 (102)
T d1q0xl2 20 TAKATLVCTITDFY---PGVVTVDWKVDGT 46 (102)
T ss_dssp TTEEEEEEEEEEEB---SSCCEEEEEETTE
T ss_pred CCeEEEEEEEeeee---CCCCEEEEEECCE
Confidence 34688999999999 4446779999885
No 4
>d2mhaa1 b.1.1.2 (A:182-270) Class I MHC, alpha-3 domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=14.98 E-value=39 Score=23.50 Aligned_cols=27 Identities=19% Similarity=0.581 Sum_probs=22.1
Q ss_pred ccceEEEeecCCceecccccccceeeecCC
Q 040903 316 KENLVVMAYDTDFYKISSDVAKETWIVDGM 345 (357)
Q Consensus 316 ke~LV~M~y~~dF~klS~DIAKETWvVGG~ 345 (357)
.+++.|++...+||=-.++| ||.++|.
T Consensus 15 ~~~~~L~C~a~gFyP~~i~v---~W~~~g~ 41 (89)
T d2mhaa1 15 EDKVTLRCWALGFYPADITL---TWQLNGE 41 (89)
T ss_dssp SSEEEEEEEEESCBSSCCEE---EEEETTE
T ss_pred CCCEEEEEEEEeEECCCCEE---EEEECCE
Confidence 34789999999999866555 8999885
No 5
>d1no5a_ d.218.1.5 (A:) Hypothetical protein HI0073 {Haemophilus influenzae [TaxId: 727]}
Probab=13.74 E-value=51 Score=23.50 Aligned_cols=37 Identities=16% Similarity=0.333 Sum_probs=24.2
Q ss_pred hhhhhhhhHHHH-hhhccc--ccceeccCCCCCcccCCCCC
Q 040903 145 IGLKKEVMQFLT-CLKNIR--FDFRCFGAFPRADITTDDED 182 (357)
Q Consensus 145 lGikkd~m~FL~-~Lr~~R--f~~rCFGsfp~a~~~t~d~d 182 (357)
+.|+.+.+..+. .|+..- ..+-.|||+- ...++.++|
T Consensus 2 ~~i~~e~l~~i~~il~~~~~~~~v~LFGS~a-rg~~~~~SD 41 (100)
T d1no5a_ 2 LDIKSEELAIVKTILQQLVPDYTVWAFGSRV-KGKAKKYSD 41 (100)
T ss_dssp CCSCHHHHHHHHHHHHHHCTTSEEEEEGGGT-TTCCCTTCC
T ss_pred CcCCHHHHHHHHHHHHHhCCCcEEEEECCCC-CCCcCCCCC
Confidence 567888888887 666531 2478999994 334454444
No 6
>d1s1ma2 c.37.1.10 (A:1-266) CTP synthase PyrG, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=11.50 E-value=25 Score=31.12 Aligned_cols=15 Identities=13% Similarity=0.554 Sum_probs=13.7
Q ss_pred hhHHHHhhhcccccc
Q 040903 151 VMQFLTCLKNIRFDF 165 (357)
Q Consensus 151 ~m~FL~~Lr~~Rf~~ 165 (357)
-||||-|+|.||+++
T Consensus 150 s~pFlEAiRQl~~e~ 164 (266)
T d1s1ma2 150 SLPFLEAIRQMAVEI 164 (266)
T ss_dssp THHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHhc
Confidence 489999999999987
No 7
>d1vcoa2 c.37.1.10 (A:11-282) CTP synthase PyrG, N-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=11.18 E-value=27 Score=30.96 Aligned_cols=16 Identities=38% Similarity=0.756 Sum_probs=14.5
Q ss_pred hhhHHHHhhhcccccc
Q 040903 150 EVMQFLTCLKNIRFDF 165 (357)
Q Consensus 150 d~m~FL~~Lr~~Rf~~ 165 (357)
+-||||.|+|.||+++
T Consensus 150 Es~pFlEAiRQl~~e~ 165 (272)
T d1vcoa2 150 ESLPFLEAIRQFRFDE 165 (272)
T ss_dssp TTHHHHHHHHTHHHHH
T ss_pred chhhHHHHHHHHHhhc
Confidence 3699999999999988
No 8
>d2ff4a1 a.4.6.1 (A:10-104) Probable regulatory protein EmbR {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=10.35 E-value=35 Score=23.73 Aligned_cols=11 Identities=36% Similarity=0.806 Sum_probs=8.9
Q ss_pred cccceeccCCC
Q 040903 162 RFDFRCFGAFP 172 (357)
Q Consensus 162 Rf~~rCFGsfp 172 (357)
|++|+|||.|-
T Consensus 1 rl~i~~lG~~~ 11 (95)
T d2ff4a1 1 RLDFGLLGPLQ 11 (95)
T ss_dssp CEEEECSSSCE
T ss_pred CeEEEeccCEE
Confidence 67889999983
No 9
>d1txga1 a.100.1.6 (A:181-335) Glycerol-3-phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=10.22 E-value=20 Score=28.08 Aligned_cols=52 Identities=21% Similarity=0.284 Sum_probs=31.1
Q ss_pred eeeeccceeccCc-----CCCCchHHHHHHHHH--------HhhccccccCCcchhHHhhhhhhhhhHHHHhhhcc
Q 040903 99 VTCAGQIKVRPKA-----NSCKSWQSVMEEIER--------IHNNRNKHKNKRPSWAESIGLKKEVMQFLTCLKNI 161 (357)
Q Consensus 99 VTC~GQIkvr~kk-----~~~k~w~svmeEier--------ih~~rk~~k~~~~~W~e~lGikkd~m~FL~~Lr~~ 161 (357)
+||++ .|-.+ ++++++...++++.. +..-+.-.+ +++.+|+. ||+++++..|
T Consensus 73 ~Tc~~---sRN~~~G~~l~~G~~~~e~~~~~~~~~~~~vEG~~t~~~v~~-----l~~~~~i~---~Pi~~~vy~I 137 (155)
T d1txga1 73 ATFRG---GRNGMLGELLGKGLSIDEAMEELERRGVGVVEGYKTAEKAYR-----LSSKINAD---TKLLDSIYRV 137 (155)
T ss_dssp HTTTC---HHHHHHHHHHHTTCCHHHHHHHHHHTTCCCCHHHHHHHHHHH-----HHHHTTCC---CHHHHHHHHH
T ss_pred hhcCC---CCccHHHHHHhhhhhHHHHHHHhccccccchHHHHHHHHHHH-----HHHHhCCC---CcHHHHHHHH
Confidence 67876 33222 567888888888653 222221122 55566664 7999988764
No 10
>d1jjcb2 a.6.1.1 (B:400-474) Domains B1 and B5 of PheRS-beta, PheT {Thermus thermophilus [TaxId: 274]}
Probab=9.69 E-value=66 Score=22.30 Aligned_cols=20 Identities=20% Similarity=0.277 Sum_probs=16.9
Q ss_pred cCCCCchHHHHHHHHHHhhc
Q 040903 111 ANSCKSWQSVMEEIERIHNN 130 (357)
Q Consensus 111 k~~~k~w~svmeEierih~~ 130 (357)
+..-..|.-|+|||-|++|=
T Consensus 51 R~Di~~~~DliEEi~R~~Gy 70 (75)
T d1jjcb2 51 RLDLRLEEDLVEEVARIQGY 70 (75)
T ss_dssp CTTCCSHHHHHHHHHHHHCG
T ss_pred ccccCCcchHHHHHHHHhCc
Confidence 35678999999999999973
Done!