Query 040904
Match_columns 92
No_of_seqs 121 out of 599
Neff 4.9
Searched_HMMs 29240
Date Mon Mar 25 21:04:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040904.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040904hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2vkp_A BTB/POZ domain-containi 66.3 11 0.00037 22.7 4.5 55 33-91 11-70 (109)
2 2vpk_A Myoneurin; transcriptio 60.9 12 0.00041 22.9 4.0 50 33-91 25-79 (116)
3 1r29_A B-cell lymphoma 6 prote 57.3 12 0.00041 23.3 3.6 53 33-91 32-88 (127)
4 1y74_B MLIN-2/CASK, peripheral 56.4 4.4 0.00015 22.6 1.2 20 49-68 26-49 (50)
5 3ga1_A Nucleus accumbens-assoc 55.1 24 0.00081 22.1 4.7 50 33-91 36-89 (129)
6 1und_A Advillin, P92; actin bi 55.0 3.3 0.00011 22.6 0.5 19 49-67 1-19 (37)
7 2if5_A Zinc finger and BTB dom 49.6 30 0.001 21.1 4.5 54 33-91 28-84 (120)
8 3drz_A BTB/POZ domain-containi 48.1 48 0.0016 20.7 5.4 59 30-91 5-68 (107)
9 2xko_C PIPX, global nitrogen r 43.8 2.6 8.9E-05 27.3 -1.3 9 49-57 5-13 (89)
10 1vd2_A Protein kinase C, IOTA 40.4 47 0.0016 20.9 4.3 42 31-76 5-48 (89)
11 3b84_A Zinc finger and BTB dom 38.9 43 0.0015 20.6 4.0 50 33-91 27-79 (119)
12 3ohu_A Transcription regulator 35.7 31 0.001 21.3 2.9 52 33-91 35-90 (125)
13 2q81_A MIZ-1 protein; BTB/POZ 33.9 49 0.0017 20.3 3.6 49 33-91 30-81 (119)
14 3htm_A Speckle-type POZ protei 32.8 55 0.0019 20.9 3.9 54 33-91 37-93 (172)
15 2nz0_B Potassium voltage-gated 32.6 70 0.0024 21.3 4.5 59 29-91 33-93 (140)
16 2ppi_A Gigaxonin; BTB domain, 32.3 95 0.0032 19.8 5.0 56 33-91 50-108 (144)
17 2al3_A TUG long isoform; TUG U 32.3 61 0.0021 20.6 3.9 40 31-72 9-48 (90)
18 3qli_A Coenzyme A transferase; 31.2 28 0.00097 27.8 2.6 44 25-69 401-454 (455)
19 1yu8_X Villin; alpha helix, 3- 31.1 13 0.00043 22.7 0.4 19 49-67 31-49 (67)
20 3n5b_B ASR0485 protein; PII, P 31.0 5.6 0.00019 26.7 -1.3 9 50-58 29-37 (112)
21 1buo_A POZ domain, protein (pr 29.3 69 0.0024 19.6 3.8 49 33-91 31-82 (121)
22 4eoz_A Speckle-type POZ protei 27.7 60 0.002 20.1 3.3 54 33-91 28-84 (145)
23 2ihc_A Transcription regulator 27.6 65 0.0022 19.9 3.4 52 33-91 32-87 (124)
24 1ujs_A Actin-binding LIM prote 27.4 17 0.00057 23.3 0.5 19 49-67 46-64 (88)
25 1qzp_A Dematin; villin headpie 27.1 11 0.00038 22.9 -0.3 19 49-67 32-50 (68)
26 1zav_U 50S ribosomal protein L 26.1 44 0.0015 17.1 2.0 13 56-68 18-30 (30)
27 1z3x_A Putative cytidyltransfe 25.8 2.4 8.1E-05 31.7 -4.3 30 25-56 207-236 (238)
28 2k6m_S Supervillin; SVHP, HP, 25.8 14 0.00047 22.4 -0.1 20 48-67 30-49 (67)
29 3fkc_A Transcriptional regulat 25.8 74 0.0025 19.5 3.4 49 33-91 34-85 (116)
30 1s1g_A Potassium voltage-gated 25.2 46 0.0016 21.8 2.4 59 29-91 11-71 (124)
31 3m91_B Prokaryotic ubiquitin-l 24.9 23 0.00079 20.1 0.7 19 56-74 23-43 (44)
32 1y6i_A Mg-chelatase cofactor G 23.1 5.6 0.00019 29.6 -2.7 31 25-57 199-229 (233)
33 3eh7_A 4-hydroxybutyrate COA-t 22.5 46 0.0016 26.1 2.4 42 26-68 382-434 (434)
34 3ezo_A Malonyl COA-acyl carrie 22.5 52 0.0018 24.2 2.5 40 31-70 10-49 (318)
35 3pmi_A PWWP domain-containing 22.0 28 0.00095 24.0 0.8 29 40-68 47-78 (134)
36 2yy9_A Zinc finger and BTB dom 21.8 68 0.0023 20.2 2.7 50 33-91 28-80 (135)
No 1
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens}
Probab=66.35 E-value=11 Score=22.67 Aligned_cols=55 Identities=16% Similarity=0.156 Sum_probs=38.0
Q ss_pred EEEEEcC--CceEEEEeccCC--CcHHHHHHHHHHHHhcCccCCCcEEec-CcHHHHHHHHHhh
Q 040904 33 CVVYVGE--NRSRYIIPITWL--NHPKFKNLLEKAAEEYGYKHDLGIILP-CDERVFRQLTSWL 91 (92)
Q Consensus 33 ~~VyVG~--~~~RfvVp~~~L--~hP~F~~LL~~aeeEfG~~~~g~L~IP-C~~~~F~~~l~~l 91 (92)
+.+.||+ +.++|-++-..| ..|.|++++...-.|-. ..+.|| .+.+.|+.++..+
T Consensus 11 v~l~v~~~~~~~~~~~Hk~iLa~~S~~F~~~f~~~~~e~~----~~i~l~~~~~~~f~~~l~~i 70 (109)
T 2vkp_A 11 VHFVVGPPGATRTVPAHKYVLAVGSSVFYAMFYGDLAEVK----SEIHIPDVEPAAFLILLKYM 70 (109)
T ss_dssp EEEEESSTTSCEEEEECHHHHHHHCHHHHHHHC------C----CEEEETTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCcEEEEeeHHHHHHcCHHHHHHhcCCcccCC----CeEEeCCCCHHHHHHHHHHH
Confidence 4556665 357899998888 68999999976544422 578887 6899999988754
No 2
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens}
Probab=60.89 E-value=12 Score=22.95 Aligned_cols=50 Identities=16% Similarity=0.356 Sum_probs=37.4
Q ss_pred EEEEEcCCceEEEEeccCC--CcHHHHHHHHHHHHhcCccCCCcEEec---CcHHHHHHHHHhh
Q 040904 33 CVVYVGENRSRYIIPITWL--NHPKFKNLLEKAAEEYGYKHDLGIILP---CDERVFRQLTSWL 91 (92)
Q Consensus 33 ~~VyVG~~~~RfvVp~~~L--~hP~F~~LL~~aeeEfG~~~~g~L~IP---C~~~~F~~~l~~l 91 (92)
+.+.||+ ++|-++-..| ..|.|++++... .+..+.|+ .+.+.|+.++..+
T Consensus 25 v~l~v~~--~~~~aHk~vLaa~S~yF~~~f~~~-------~~~~i~l~~~~~~~~~f~~ll~~~ 79 (116)
T 2vpk_A 25 CTIVIGE--FQFKAHRNVLASFSEYFGAIYRST-------SENNVFLDQSQVKADGFQKLLEFI 79 (116)
T ss_dssp EEEEETT--EEEEECHHHHHHHCHHHHHHHTTC-------CCSCEECCTTTCCHHHHHHHHHHH
T ss_pred EEEEECC--EEEeccHHHHhhcCHHHHHHHcCC-------CCCeEEeecCCCCHHHHHHHHHHH
Confidence 4456664 6888888877 679999998754 24568887 7899999998754
No 3
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A
Probab=57.26 E-value=12 Score=23.32 Aligned_cols=53 Identities=19% Similarity=0.233 Sum_probs=39.8
Q ss_pred EEEEEcCCceEEEEeccCC--CcHHHHHHHHHHHHhcCccCCCcEEe-c-CcHHHHHHHHHhh
Q 040904 33 CVVYVGENRSRYIIPITWL--NHPKFKNLLEKAAEEYGYKHDLGIIL-P-CDERVFRQLTSWL 91 (92)
Q Consensus 33 ~~VyVG~~~~RfvVp~~~L--~hP~F~~LL~~aeeEfG~~~~g~L~I-P-C~~~~F~~~l~~l 91 (92)
+.+.||+ ++|-+.-..| ..|.|++++...-.| ....|.| + .+.+.|+.++..+
T Consensus 32 v~l~v~~--~~~~aHk~iLaa~S~~F~~~f~~~~~e----~~~~i~l~~~~~~~~f~~ll~~~ 88 (127)
T 1r29_A 32 VVIVVSR--EQFRAHKTVLMACSGLFYSIFTDQLKR----NLSVINLDPEINPEGFNILLDFM 88 (127)
T ss_dssp EEEEETT--EEEEECHHHHHHHCHHHHHHHTSTTTT----TCSEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECC--EEEehHHHHHHHhCHHHHHHhcCCccC----CCCEEEeCCCCCHHHHHHHHHHH
Confidence 4556664 6888888887 689999999865444 3457999 4 6889999988754
No 4
>1y74_B MLIN-2/CASK, peripheral plasma membrane protein CASK; L27 domain, scaffold protein, protein assembly, cell polarity, transport protein; NMR {Mus musculus} SCOP: a.194.1.1 PDB: 1zl8_B
Probab=56.37 E-value=4.4 Score=22.63 Aligned_cols=20 Identities=40% Similarity=0.642 Sum_probs=15.1
Q ss_pred cCCCcHHHHHHHHH----HHHhcC
Q 040904 49 TWLNHPKFKNLLEK----AAEEYG 68 (92)
Q Consensus 49 ~~L~hP~F~~LL~~----aeeEfG 68 (92)
..|+.|.|++||+- |.++||
T Consensus 26 ~lL~~PHfqaLl~ahD~Va~~~y~ 49 (50)
T 1y74_B 26 RILTQPHFMALLQTHDVVAHEVYS 49 (50)
T ss_dssp HHHHSHHHHHHHHHHHHHHHHHHT
T ss_pred HHHcCHHHHHHHHHHHHHHHHHhc
Confidence 46789999999974 556664
No 5
>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens}
Probab=55.14 E-value=24 Score=22.08 Aligned_cols=50 Identities=20% Similarity=0.319 Sum_probs=38.1
Q ss_pred EEEEEcCCceEEEEeccCCC--cHHHHHHHHHHHHhcCccCCCcEEec--CcHHHHHHHHHhh
Q 040904 33 CVVYVGENRSRYIIPITWLN--HPKFKNLLEKAAEEYGYKHDLGIILP--CDERVFRQLTSWL 91 (92)
Q Consensus 33 ~~VyVG~~~~RfvVp~~~L~--hP~F~~LL~~aeeEfG~~~~g~L~IP--C~~~~F~~~l~~l 91 (92)
+.+.||+ ++|-+.-..|. .|.|++++... ....+.|| .+.+.|+.++..+
T Consensus 36 v~l~v~~--~~~~~Hk~vLaa~S~~F~~~f~~~-------~~~~i~l~~~~~~~~f~~ll~~i 89 (129)
T 3ga1_A 36 VSVVVKG--HAFKAHRAVLAASSSYFRDLFNNS-------RSAVVELPAAVQPQSFQQILSFC 89 (129)
T ss_dssp EEEEETT--EEEEECHHHHHHHBHHHHHHHHHC-------CCSEEECCTTCCHHHHHHHHHHH
T ss_pred eEEEECC--EEEEehHHHHHHcCHHHHHHHcCC-------CCCEEEECCCCCHHHHHHHHHHH
Confidence 4566764 68888777665 69999998875 34579996 8999999998754
No 6
>1und_A Advillin, P92; actin binding, F-actin binding, cytoskeleton, headpiece subdomain; NMR {Homo sapiens} SCOP: a.14.1.1
Probab=55.02 E-value=3.3 Score=22.56 Aligned_cols=19 Identities=11% Similarity=0.338 Sum_probs=17.0
Q ss_pred cCCCcHHHHHHHHHHHHhc
Q 040904 49 TWLNHPKFKNLLEKAAEEY 67 (92)
Q Consensus 49 ~~L~hP~F~~LL~~aeeEf 67 (92)
.||+.-.|++++.++.+||
T Consensus 1 ~yLsd~dF~~vFgmsr~eF 19 (37)
T 1und_A 1 XYLSEQDFVSVFGITRGQF 19 (37)
T ss_dssp -CCCHHHHHHHHSSCHHHH
T ss_pred CCCCHHHHHHHHCcCHHHH
Confidence 4899999999999999997
No 7
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A
Probab=49.64 E-value=30 Score=21.11 Aligned_cols=54 Identities=15% Similarity=0.159 Sum_probs=37.1
Q ss_pred EEEEEcCCceEEEEeccCC--CcHHHHHHHHHHHHhcCccCCCcEEec-CcHHHHHHHHHhh
Q 040904 33 CVVYVGENRSRYIIPITWL--NHPKFKNLLEKAAEEYGYKHDLGIILP-CDERVFRQLTSWL 91 (92)
Q Consensus 33 ~~VyVG~~~~RfvVp~~~L--~hP~F~~LL~~aeeEfG~~~~g~L~IP-C~~~~F~~~l~~l 91 (92)
+.+.||+ ++|-+.-..| ..|.|++++...-.| .....+.|+ .+.+.|+.++..+
T Consensus 28 v~l~v~~--~~~~aHk~vLaa~S~~F~~~f~~~~~e---~~~~~i~l~~~~~~~f~~ll~~~ 84 (120)
T 2if5_A 28 VVILVEG--REFPTHRSVLAACSQYFKKLFTSGAVV---DQQNVYEIDFVSAEALTALMDFA 84 (120)
T ss_dssp EEEEETT--EEEEECHHHHHHHCHHHHHHHHC--------CCSEEECCSSCHHHHHHHHHHH
T ss_pred eEEEECC--EEEeHHHHHHHHhCHHHHHHhcCCccc---cCCceEEeCCCCHHHHHHHHHHH
Confidence 4456664 6888888877 489999999754333 234578888 5889999988754
No 8
>3drz_A BTB/POZ domain-containing protein KCTD5; potassium channel domain T1, pentamer, unkno function; 1.90A {Homo sapiens}
Probab=48.09 E-value=48 Score=20.68 Aligned_cols=59 Identities=14% Similarity=0.200 Sum_probs=41.6
Q ss_pred CCeEEEEEcCCceEEEEeccCCC-cH--HHHHHHHHHHHhcC--ccCCCcEEecCcHHHHHHHHHhh
Q 040904 30 KGHCVVYVGENRSRYIIPITWLN-HP--KFKNLLEKAAEEYG--YKHDLGIILPCDERVFRQLTSWL 91 (92)
Q Consensus 30 kG~~~VyVG~~~~RfvVp~~~L~-hP--~F~~LL~~aeeEfG--~~~~g~L~IPC~~~~F~~~l~~l 91 (92)
...+.+.||. ++|.+..+-|. +| .|..|.... .++. .+.+|.+-|-.+...|++||.-|
T Consensus 5 ~~~v~LNVGG--~~f~t~~~TL~~~p~s~L~~~~~~~-~~~~~~~d~~~~~fiDRdp~~F~~IL~~l 68 (107)
T 3drz_A 5 SKWVRLNVGG--TYFLTTRQTLCRDPKSFLYRLCQAD-PDLDSDKDETGAYLIDRDPTYFGPVLNYL 68 (107)
T ss_dssp CCEEEEEETT--EEEEEEHHHHTSSTTSHHHHHHTTC-GGGGGGBCTTSCEEECSCHHHHHHHHHHH
T ss_pred CCEEEEEECC--EEEEECHHHHhcCCCcchhHHHhcC-CCCCcCCCCCceEEecCChHHHHHHHHHh
Confidence 4578889996 69999987775 44 455554321 1232 33567899999999999999754
No 9
>2xko_C PIPX, global nitrogen regulator; transcription, nitrogen assimilation, CRP/FNR superfamily, 2-oxoglutarate, global nitrogen controller; HET: AKG; 2.25A {Synechococcus elongatus} PDB: 2xg8_D*
Probab=43.80 E-value=2.6 Score=27.35 Aligned_cols=9 Identities=56% Similarity=1.184 Sum_probs=7.4
Q ss_pred cCCCcHHHH
Q 040904 49 TWLNHPKFK 57 (92)
Q Consensus 49 ~~L~hP~F~ 57 (92)
.|||||.|-
T Consensus 5 ~YLNHPtFG 13 (89)
T 2xko_C 5 NYLNHPTFG 13 (89)
T ss_dssp CEEEETTTE
T ss_pred ccccCCccc
Confidence 499999884
No 10
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=40.42 E-value=47 Score=20.88 Aligned_cols=42 Identities=7% Similarity=0.030 Sum_probs=29.5
Q ss_pred CeEEEEE--cCCceEEEEeccCCCcHHHHHHHHHHHHhcCccCCCcEE
Q 040904 31 GHCVVYV--GENRSRYIIPITWLNHPKFKNLLEKAAEEYGYKHDLGII 76 (92)
Q Consensus 31 G~~~VyV--G~~~~RfvVp~~~L~hP~F~~LL~~aeeEfG~~~~g~L~ 76 (92)
|-+.|-+ .++..|+.||. ...|.+|.++-.+-|++..+.+++
T Consensus 5 ~~vkvK~~~~gdi~~~~v~~----~i~~~~L~~kv~~~~~~~~~~~f~ 48 (89)
T 1vd2_A 5 SQVRVKAYYRGDIMITHFEP----SISFEGLCNEVRDMCSFDNEQLFT 48 (89)
T ss_dssp SCEEEEEESSSCEEEEEECT----TCCHHHHHHHHHHHTTCCSSCCEE
T ss_pred CeEEEEEEeCCeEEEEECCC----CCCHHHHHHHHHHHhCCCCCCeEE
Confidence 3344433 44567888886 568999999999999986443443
No 11
>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens}
Probab=38.86 E-value=43 Score=20.58 Aligned_cols=50 Identities=18% Similarity=0.243 Sum_probs=36.4
Q ss_pred EEEEEcCCceEEEEeccCC--CcHHHHHHHHHHHHhcCccCCCcEEec-CcHHHHHHHHHhh
Q 040904 33 CVVYVGENRSRYIIPITWL--NHPKFKNLLEKAAEEYGYKHDLGIILP-CDERVFRQLTSWL 91 (92)
Q Consensus 33 ~~VyVG~~~~RfvVp~~~L--~hP~F~~LL~~aeeEfG~~~~g~L~IP-C~~~~F~~~l~~l 91 (92)
+.+.||+ ++|-++-..| ..|.|++++... . +..|.|| .+.+.|+.++..+
T Consensus 27 v~l~v~~--~~f~aHk~vLaa~S~yF~~~f~~~-----~--~~~i~l~~~~~~~f~~ll~~i 79 (119)
T 3b84_A 27 ATLDVGG--LVFKAHWSVLACCSHFFQSLYGDG-----S--GGSVVLPAGFAEIFGLLLDFF 79 (119)
T ss_dssp EEEEETT--EEEEECHHHHHHHCHHHHHHHTTT-----T--CCCEEECGGGHHHHHHHHHHH
T ss_pred eEEEECC--EEEEeeHHHHhhcCHHHHHHHCCC-----C--CCeEEeCCCCHHHHHHHHHHH
Confidence 3455664 6888887777 479999998652 1 4578888 5688999988754
No 12
>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} SCOP: d.42.1.0 PDB: 3ohv_A
Probab=35.66 E-value=31 Score=21.30 Aligned_cols=52 Identities=21% Similarity=0.253 Sum_probs=37.4
Q ss_pred EEEEEcCCceEEEEeccCCC--cHHHHHHHHHHHHhcCccCCCcEEec--CcHHHHHHHHHhh
Q 040904 33 CVVYVGENRSRYIIPITWLN--HPKFKNLLEKAAEEYGYKHDLGIILP--CDERVFRQLTSWL 91 (92)
Q Consensus 33 ~~VyVG~~~~RfvVp~~~L~--hP~F~~LL~~aeeEfG~~~~g~L~IP--C~~~~F~~~l~~l 91 (92)
+.+.||+ ++|-+.-..|. .|.|++++.....| +..+.+| .+.+.|+.++..+
T Consensus 35 v~l~v~~--~~f~aHk~vLaa~S~yF~~~f~~~~~e-----~~~i~l~~~~~~~~f~~~l~~i 90 (125)
T 3ohu_A 35 VTLIVER--KEFRAHRAVLAACSEYFWQALVGQTKN-----DLVVSLPEEVTARGFGPLLQFA 90 (125)
T ss_dssp EEEEETT--EEEEECHHHHHHHBHHHHHHHTTCCCS-----SCEEECCTTCCHHHHHHHHHHH
T ss_pred eEEEECC--EEEechHHHHHHcCHHHHHHhcCCCCC-----CcEEEeCCCCCHHHHHHHHHhH
Confidence 4566764 57888777764 68999998754322 4468887 7999999998754
No 13
>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A
Probab=33.91 E-value=49 Score=20.29 Aligned_cols=49 Identities=16% Similarity=0.195 Sum_probs=35.8
Q ss_pred EEEEEcCCceEEEEeccCC--CcHHHHHHHHHHHHhcCccCCCcEEecC-cHHHHHHHHHhh
Q 040904 33 CVVYVGENRSRYIIPITWL--NHPKFKNLLEKAAEEYGYKHDLGIILPC-DERVFRQLTSWL 91 (92)
Q Consensus 33 ~~VyVG~~~~RfvVp~~~L--~hP~F~~LL~~aeeEfG~~~~g~L~IPC-~~~~F~~~l~~l 91 (92)
+.+.||+ ++|-+.-..| ..|.|++++.. ++..+.++- +.+.|+.++..+
T Consensus 30 v~l~v~~--~~~~aHk~vLaa~S~yF~~~f~~--------~~~~i~l~~~~~~~f~~ll~~~ 81 (119)
T 2q81_A 30 CTFVVDG--VHFKAHKAVLAACSEYFKMLFVD--------QKDVVHLDISNAAGLGQVLEFM 81 (119)
T ss_dssp EEEEETT--EEEEECHHHHHHHCHHHHHHHHH--------CCSGGGGGGCCHHHHHHHHHHH
T ss_pred eEEEECC--EEEehhHHHHHHcCHHHHHHHcC--------CCCEEEeCCCCHHHHHHHHHHH
Confidence 3455664 6888888887 48999999975 234577775 788899888653
No 14
>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens}
Probab=32.77 E-value=55 Score=20.89 Aligned_cols=54 Identities=19% Similarity=0.448 Sum_probs=38.7
Q ss_pred EEEEEcCCceEEEEeccCC--CcHHHHHHHHHHHHhcCccCCCcEEec-CcHHHHHHHHHhh
Q 040904 33 CVVYVGENRSRYIIPITWL--NHPKFKNLLEKAAEEYGYKHDLGIILP-CDERVFRQLTSWL 91 (92)
Q Consensus 33 ~~VyVG~~~~RfvVp~~~L--~hP~F~~LL~~aeeEfG~~~~g~L~IP-C~~~~F~~~l~~l 91 (92)
+.+.||+ ++|-++-..| ..|.|++++...-.| ..+..+.|| .+.+.|+.++..+
T Consensus 37 v~l~v~~--~~~~~Hk~iL~~~S~~F~~~f~~~~~e---~~~~~i~l~~~~~~~f~~~l~~~ 93 (172)
T 3htm_A 37 CCLCVAG--QEFQAHKAILAARSPVFSAMFEHEMEE---SKKNRVEINDVEPEVFKEMMCFI 93 (172)
T ss_dssp EEEEETT--EEEEECHHHHHHHCHHHHHHHHSCCCG---GGTTEEEECSSCHHHHHHHHHHH
T ss_pred eEEEECC--EEEEeeHHHHHHcCHHHHHHHccCccc---cCCCeEEecCCCHHHHHHHHHHH
Confidence 5666764 5798888877 479999999843221 233578887 5899999988754
No 15
>2nz0_B Potassium voltage-gated channel subfamily D membe; KV4.3, kchip1, membrane protein; 3.20A {Homo sapiens} PDB: 2i2r_A
Probab=32.60 E-value=70 Score=21.34 Aligned_cols=59 Identities=22% Similarity=0.289 Sum_probs=40.9
Q ss_pred CCCeEEEEEcCCceEEEEeccCC-CcHHHHHHHHHHHHhcCc-cCCCcEEecCcHHHHHHHHHhh
Q 040904 29 PKGHCVVYVGENRSRYIIPITWL-NHPKFKNLLEKAAEEYGY-KHDLGIILPCDERVFRQLTSWL 91 (92)
Q Consensus 29 pkG~~~VyVG~~~~RfvVp~~~L-~hP~F~~LL~~aeeEfG~-~~~g~L~IPC~~~~F~~~l~~l 91 (92)
....+.+.||. .||.+..+-| ++|. .+|..++...-+ +.+|.+-|-.+...|++||.-|
T Consensus 33 ~~~~V~LNVGG--~~F~T~~~TL~~~P~--S~L~~~~~~~~~~~~~g~yFiDRdp~~F~~ILnfl 93 (140)
T 2nz0_B 33 QDELIVLNVSG--RRFQTWRTTLERYPD--TLLGSTEKEFFFNEDTKEYFFDRDPEVFRCVLNFY 93 (140)
T ss_dssp CCCEEEEEETT--EEEEEEHHHHHTCTT--STTTSGGGGGSEETTTTEEEECSCHHHHHHHHHHH
T ss_pred CCCEEEEEECC--EEEEeeHHHHhcCCC--eeecccCCcccccCCCCeEEEeCCcHHHHHHHHHH
Confidence 45788889996 6899987765 3332 234334433333 3467899999999999999754
No 16
>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics, struct genomics consortium, SGC, structural protein; 2.40A {Homo sapiens}
Probab=32.32 E-value=95 Score=19.80 Aligned_cols=56 Identities=13% Similarity=0.148 Sum_probs=37.8
Q ss_pred EEEEEcCCceEEEEeccCCC--cHHHHHHHHHHHHhcCccCCCcEEec-CcHHHHHHHHHhh
Q 040904 33 CVVYVGENRSRYIIPITWLN--HPKFKNLLEKAAEEYGYKHDLGIILP-CDERVFRQLTSWL 91 (92)
Q Consensus 33 ~~VyVG~~~~RfvVp~~~L~--hP~F~~LL~~aeeEfG~~~~g~L~IP-C~~~~F~~~l~~l 91 (92)
+.+.||+ ++|-+.-..|. .|.|++++...-.|- -.....|.|+ .+.+.|+.+|..+
T Consensus 50 v~l~v~~--~~f~aHk~vLaa~S~yF~~mf~~~~~e~-e~~~~~I~l~~v~~~~f~~lL~fi 108 (144)
T 2ppi_A 50 AHLVLDG--EEIPVQKNILAAASPYIRTKLNYNPPKD-DGSTYKIELEGISVMVMREILDYI 108 (144)
T ss_dssp EEEEETT--EEEEECHHHHHHHCHHHHHHHHHCC------CCCEEECCSSCHHHHHHHHHHH
T ss_pred eEEEECC--EEEehHHHHHHHcCHHHHHHHcCCCccc-cCCCcEEEeCCCCHHHHHHHHHHH
Confidence 4455664 68888887774 899999997532110 0134478888 4899999998754
No 17
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=32.27 E-value=61 Score=20.61 Aligned_cols=40 Identities=18% Similarity=0.301 Sum_probs=28.4
Q ss_pred CeEEEEEcCCceEEEEeccCCCcHHHHHHHHHHHHhcCccCC
Q 040904 31 GHCVVYVGENRSRYIIPITWLNHPKFKNLLEKAAEEYGYKHD 72 (92)
Q Consensus 31 G~~~VyVG~~~~RfvVp~~~L~hP~F~~LL~~aeeEfG~~~~ 72 (92)
|--.+++...-+|+.|++. ..-.+.++|++|=+.||++.+
T Consensus 9 ~m~v~Vl~~n~rr~~VKvt--p~t~L~~VL~eaC~K~gl~~~ 48 (90)
T 2al3_A 9 GSAVSVLAPNGRRHTVKVT--PSTVLLQVLEDTCRRQDFNPS 48 (90)
T ss_dssp -CCEEEECTTSCEEEECCC--TTSBHHHHHHHHHHHTTCCGG
T ss_pred ccEEEEEcCCCcEEEEEEC--CCCCHHHHHHHHHHHhCCChh
Confidence 3334445555689999983 344678899999999999754
No 18
>3qli_A Coenzyme A transferase; COEN transferase; 1.90A {Yersinia pestis} PDB: 3qlk_A 3s8d_A
Probab=31.22 E-value=28 Score=27.83 Aligned_cols=44 Identities=30% Similarity=0.427 Sum_probs=29.5
Q ss_pred CCCCCCCeEEEEEcC---------C-ceEEEEeccCCCcHHHHHHHHHHHHhcCc
Q 040904 25 PNDVPKGHCVVYVGE---------N-RSRYIIPITWLNHPKFKNLLEKAAEEYGY 69 (92)
Q Consensus 25 ~~~vpkG~~~VyVG~---------~-~~RfvVp~~~L~hP~F~~LL~~aeeEfG~ 69 (92)
+.+.|++++-+.|-| . ++|-.-=++ +.||.||+.|.+++++.|+
T Consensus 401 ~vtt~~~~v~~vvTE~Gva~l~G~s~~eRa~~lI~-iAHPdfR~~L~~~A~~~~~ 454 (455)
T 3qli_A 401 PVTTPRIDTHYIVTEFGAVNLKGLSSTERALRIIE-LAHPDFRDELTQAAKKMHL 454 (455)
T ss_dssp SCSBCTTTCCEEEETTEEEECTTCCHHHHHHHHHT-TSCHHHHHHHHHHHHHTTC
T ss_pred CcccCcccccEEEeccEEEECCCCCHHHHHHHHHH-ccCcchHHHHHHHHHHcCC
Confidence 445688887777643 1 233332234 8899999999988888764
No 19
>1yu8_X Villin; alpha helix, 3-10 helix, structural protein; 1.45A {Gallus gallus} SCOP: a.14.1.1 PDB: 1qqv_A 1yu5_X 2rjx_A 2rjy_A 1yu7_X 2rjv_A 2rjw_A 3nkj_A 3myc_A 3mya_A 3mye_X 1unc_A
Probab=31.13 E-value=13 Score=22.66 Aligned_cols=19 Identities=16% Similarity=0.384 Sum_probs=18.0
Q ss_pred cCCCcHHHHHHHHHHHHhc
Q 040904 49 TWLNHPKFKNLLEKAAEEY 67 (92)
Q Consensus 49 ~~L~hP~F~~LL~~aeeEf 67 (92)
.||+.-.|++++.++.+||
T Consensus 31 ~yLsdedF~~vFgms~~eF 49 (67)
T 1yu8_X 31 NHLSDEDFKAVFGMTRSAF 49 (67)
T ss_dssp GGSCHHHHHHHHSSCHHHH
T ss_pred hcCCHHHHHHHHCcCHHHH
Confidence 7999999999999999998
No 20
>3n5b_B ASR0485 protein; PII, PIPX, transcription regulator, signal transducer; HET: ADP; 1.90A {Nostoc}
Probab=31.02 E-value=5.6 Score=26.72 Aligned_cols=9 Identities=33% Similarity=0.885 Sum_probs=7.5
Q ss_pred CCCcHHHHH
Q 040904 50 WLNHPKFKN 58 (92)
Q Consensus 50 ~L~hP~F~~ 58 (92)
|||||.|--
T Consensus 29 YLNHPTFGL 37 (112)
T 3n5b_B 29 YINHPTWGL 37 (112)
T ss_dssp EEEETTTEE
T ss_pred hccCCccch
Confidence 999999843
No 21
>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A
Probab=29.31 E-value=69 Score=19.57 Aligned_cols=49 Identities=18% Similarity=0.298 Sum_probs=35.5
Q ss_pred EEEEEcCCceEEEEeccCC--CcHHHHHHHHHHHHhcCccCCCcEEec-CcHHHHHHHHHhh
Q 040904 33 CVVYVGENRSRYIIPITWL--NHPKFKNLLEKAAEEYGYKHDLGIILP-CDERVFRQLTSWL 91 (92)
Q Consensus 33 ~~VyVG~~~~RfvVp~~~L--~hP~F~~LL~~aeeEfG~~~~g~L~IP-C~~~~F~~~l~~l 91 (92)
+.+.||+ ++|-++-..| ..|.|++++.. ....+.|+ .+.+.|+.++.-+
T Consensus 31 v~l~v~~--~~f~aHk~vLaa~S~yF~~~f~~--------~~~~i~l~~~~~~~f~~ll~~~ 82 (121)
T 1buo_A 31 VVIMVDS--QEFHAHRTVLACTSKMFEILFHR--------NSQHYTLDFLSPKTFQQILEYA 82 (121)
T ss_dssp EEEEESS--CEEEECHHHHHHHCHHHHHHTTS--------CCSEEEECSSCHHHHHHHHHHH
T ss_pred EEEEECC--EEEehhHHHHhhcCHHHHHHHcC--------CCcEEEeCCCCHHHHHHHHHhh
Confidence 4455664 5788887776 67999998863 23468887 7889999988643
No 22
>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens}
Probab=27.66 E-value=60 Score=20.08 Aligned_cols=54 Identities=19% Similarity=0.448 Sum_probs=37.5
Q ss_pred EEEEEcCCceEEEEeccCC--CcHHHHHHHHHHHHhcCccCCCcEEec-CcHHHHHHHHHhh
Q 040904 33 CVVYVGENRSRYIIPITWL--NHPKFKNLLEKAAEEYGYKHDLGIILP-CDERVFRQLTSWL 91 (92)
Q Consensus 33 ~~VyVG~~~~RfvVp~~~L--~hP~F~~LL~~aeeEfG~~~~g~L~IP-C~~~~F~~~l~~l 91 (92)
+.+.||+ ++|-++-..| ..|.|++++...-.| .....+.+| .+.+.|+.++..+
T Consensus 28 v~l~v~~--~~~~~Hk~iL~~~S~~F~~~f~~~~~e---~~~~~i~l~~~~~~~~~~~l~~~ 84 (145)
T 4eoz_A 28 CCLCVAG--QEFQAHKAILAARSPVFSAMFEHEMEE---SKKNRVEINDVEPEVFKEMMCFI 84 (145)
T ss_dssp EEEEETT--EEEEECHHHHHHHCHHHHHHHHSSSHH---HHHTEEEECSSCHHHHHHHHHHH
T ss_pred eEEEECC--EEEEeehHHHHHcCHHHHHHHcCCCcC---CCCceEEecCCCHHHHHHHHHhh
Confidence 4566764 5788887776 479999999753222 123468887 6899999988754
No 23
>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC domain,transcription factor, protein-PROT interaction; 2.44A {Homo sapiens}
Probab=27.61 E-value=65 Score=19.87 Aligned_cols=52 Identities=21% Similarity=0.357 Sum_probs=35.7
Q ss_pred EEEEEcCCceEEEEeccCC--CcHHHHHHHHHHHHhcCccCCCcEEec--CcHHHHHHHHHhh
Q 040904 33 CVVYVGENRSRYIIPITWL--NHPKFKNLLEKAAEEYGYKHDLGIILP--CDERVFRQLTSWL 91 (92)
Q Consensus 33 ~~VyVG~~~~RfvVp~~~L--~hP~F~~LL~~aeeEfG~~~~g~L~IP--C~~~~F~~~l~~l 91 (92)
+.+.||+ ++|-+.-..| ..|.|++++.....| ...+.+| .+.+.|+.++.-+
T Consensus 32 v~l~v~~--~~~~aHk~vLaa~S~yF~~mf~~~~~e-----~~~i~l~~~v~~~~f~~lL~~i 87 (124)
T 2ihc_A 32 VTIFVEG--QRFRAHRSVLAACSSYFHSRIVGQADG-----ELNITLPEEVTVKGFEPLIQFA 87 (124)
T ss_dssp EEEEETT--EEEEECHHHHHHHBHHHHHHHTTC--------CEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECC--EEEecHHHHHHHcCHHHHHHHcCCCCC-----CceEeecCCcCHHHHHHHHHHh
Confidence 3455664 6888887777 589999998754322 2467884 7888999888643
No 24
>1ujs_A Actin-binding LIM protein homologue; VHP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, structural protein; NMR {Homo sapiens} SCOP: a.14.1.1 PDB: 2l3x_A
Probab=27.40 E-value=17 Score=23.27 Aligned_cols=19 Identities=16% Similarity=0.382 Sum_probs=18.2
Q ss_pred cCCCcHHHHHHHHHHHHhc
Q 040904 49 TWLNHPKFKNLLEKAAEEY 67 (92)
Q Consensus 49 ~~L~hP~F~~LL~~aeeEf 67 (92)
.||+.-.|++++.++.+||
T Consensus 46 ~YLSdedF~~vFgMsr~eF 64 (88)
T 1ujs_A 46 RHLSQEEFYQVFGMTISEF 64 (88)
T ss_dssp GGSCTTHHHHHHSSCHHHH
T ss_pred hcCCHHHHHHHHCcCHHHH
Confidence 7999999999999999998
No 25
>1qzp_A Dematin; villin headpiece, actin binding domain, protein binding; NMR {Homo sapiens} SCOP: a.14.1.1 PDB: 1zv6_A
Probab=27.09 E-value=11 Score=22.85 Aligned_cols=19 Identities=21% Similarity=0.468 Sum_probs=17.9
Q ss_pred cCCCcHHHHHHHHHHHHhc
Q 040904 49 TWLNHPKFKNLLEKAAEEY 67 (92)
Q Consensus 49 ~~L~hP~F~~LL~~aeeEf 67 (92)
.||+.-.|++++.++.+||
T Consensus 32 ~yLsdedF~~vFgmsr~eF 50 (68)
T 1qzp_A 32 RHLSAEDFSRVFAMSPEEF 50 (68)
T ss_dssp GGBCHHHHHHHSSSCHHHH
T ss_pred hhCCHHHHHHHHCcCHHHH
Confidence 7999999999999999997
No 26
>1zav_U 50S ribosomal protein L7/L12; ribosome structure and function, L10-L12 complex structure, L10E structure, L7/12 ribosomal stalk; 1.90A {Thermotoga maritima} SCOP: a.108.1.1 PDB: 1zaw_U 1zax_U 1dd3_C
Probab=26.06 E-value=44 Score=17.10 Aligned_cols=13 Identities=23% Similarity=0.695 Sum_probs=10.3
Q ss_pred HHHHHHHHHHhcC
Q 040904 56 FKNLLEKAAEEYG 68 (92)
Q Consensus 56 F~~LL~~aeeEfG 68 (92)
..+|.+.-||+||
T Consensus 18 l~eLvk~lEe~fG 30 (30)
T 1zav_U 18 LAELVKKLEDKFG 30 (30)
T ss_dssp HHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhC
Confidence 4578888889987
No 27
>1z3x_A Putative cytidyltransferase; transferase activator; 1.50A {Thermosynechococcus elongatus} SCOP: a.118.1.22 a.261.1.1 PDB: 1z3y_A
Probab=25.82 E-value=2.4 Score=31.74 Aligned_cols=30 Identities=23% Similarity=0.327 Sum_probs=18.9
Q ss_pred CCCCCCCeEEEEEcCCceEEEEeccCCCcHHH
Q 040904 25 PNDVPKGHCVVYVGENRSRYIIPITWLNHPKF 56 (92)
Q Consensus 25 ~~~vpkG~~~VyVG~~~~RfvVp~~~L~hP~F 56 (92)
....|+||+|+.-. -+=.-+=.+.|+||.|
T Consensus 207 sl~AP~GHLP~~~~--lrGv~l~~~ll~hpa~ 236 (238)
T 1z3x_A 207 DLSAPRGHLPLTNQ--LRGVQVLNALLNHPAW 236 (238)
T ss_dssp STTSCTTCCSCCCC--TTCSHHHHHHHTCGGG
T ss_pred eCCCCCCCCCcCcc--cccHHHHHHHHcCccc
Confidence 34689999998631 1112244567888876
No 28
>2k6m_S Supervillin; SVHP, HP, headpiece, archvillin, actin capping, actin-binding, alternative splicing, calcium, cytoplasm, cytoskeleton, membrane; NMR {Homo sapiens} PDB: 2k6n_A
Probab=25.80 E-value=14 Score=22.43 Aligned_cols=20 Identities=25% Similarity=0.484 Sum_probs=18.5
Q ss_pred ccCCCcHHHHHHHHHHHHhc
Q 040904 48 ITWLNHPKFKNLLEKAAEEY 67 (92)
Q Consensus 48 ~~~L~hP~F~~LL~~aeeEf 67 (92)
-.||+.-.|++++.++.+||
T Consensus 30 E~yLsdedF~~vFgmsr~eF 49 (67)
T 2k6m_S 30 EIYLTDEDFEFALDMTRDEY 49 (67)
T ss_dssp GGGSCHHHHHHHTSSCHHHH
T ss_pred HhhCCHHHHHHHHCcCHHHH
Confidence 37999999999999999998
No 29
>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain containing 33, kaiso transcriptio ZNF-kaiso, ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB: 3m4t_A 3m8v_A
Probab=25.78 E-value=74 Score=19.50 Aligned_cols=49 Identities=16% Similarity=0.310 Sum_probs=34.9
Q ss_pred EEEEEcCCceEEEEeccCC--CcHHHHHHHHHHHHhcCccCCCcEEec-CcHHHHHHHHHhh
Q 040904 33 CVVYVGENRSRYIIPITWL--NHPKFKNLLEKAAEEYGYKHDLGIILP-CDERVFRQLTSWL 91 (92)
Q Consensus 33 ~~VyVG~~~~RfvVp~~~L--~hP~F~~LL~~aeeEfG~~~~g~L~IP-C~~~~F~~~l~~l 91 (92)
+.+.||+ ++|-+.-..| ..|.|++++... ...+.++ .+.+.|+.++..+
T Consensus 34 v~l~v~~--~~f~aHk~vLaa~S~~F~~~f~~~--------~~~i~l~~~~~~~f~~~l~~~ 85 (116)
T 3fkc_A 34 VTVIVED--RKFRAHKNILSASSTYFHQLFSVA--------GQVVELSFIRAEIFAEILNYI 85 (116)
T ss_dssp EEEEETT--EEEEECHHHHHHHCHHHHHHTTSC--------CSEEEECSSCHHHHHHHHHHH
T ss_pred EEEEECC--EEEehhHHHHHHcCHHHHHHHcCC--------CCEEEeCCCCHHHHHHHHHhh
Confidence 4556664 6777776666 468898887643 3468886 7899999988754
No 30
>1s1g_A Potassium voltage-gated channel subfamily D membe; K+ channels, tetramerization domain, T1 domain, transport PR; 2.60A {Homo sapiens} SCOP: d.42.1.2
Probab=25.25 E-value=46 Score=21.76 Aligned_cols=59 Identities=22% Similarity=0.292 Sum_probs=40.4
Q ss_pred CCCeEEEEEcCCceEEEEeccCCC-cHHHHHHHHHHHHhcCc-cCCCcEEecCcHHHHHHHHHhh
Q 040904 29 PKGHCVVYVGENRSRYIIPITWLN-HPKFKNLLEKAAEEYGY-KHDLGIILPCDERVFRQLTSWL 91 (92)
Q Consensus 29 pkG~~~VyVG~~~~RfvVp~~~L~-hP~F~~LL~~aeeEfG~-~~~g~L~IPC~~~~F~~~l~~l 91 (92)
....+.+.||. .||.+..+-|. +|. .+|..++...-+ +.+|.+-|-.+...|++||.-|
T Consensus 11 ~~~~V~LNVGG--~~F~t~~~TL~~~p~--S~L~~~~~~~~~~~~~g~~FiDRdp~~F~~ILnfl 71 (124)
T 1s1g_A 11 QDELIVLNVSG--RRFQTWRTTLERYPD--TLLGSTEKEFFFNEDTKEYFFDRDPEVFRCVLNFY 71 (124)
T ss_dssp -CCEEEEEETT--EEEEEEHHHHTTSTT--SSTTSSGGGGTBCSSSCSEEECSCHHHHHHHHHHH
T ss_pred CCCEEEEEeCC--EEEEEeHHHHhcCCC--ceecccCCcccccCCCCcEEEcCChHHHHHHHHHH
Confidence 45678889996 69999887663 332 234334433223 3467899999999999999764
No 31
>3m91_B Prokaryotic ubiquitin-like protein PUP; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis}
Probab=24.88 E-value=23 Score=20.07 Aligned_cols=19 Identities=32% Similarity=0.672 Sum_probs=6.4
Q ss_pred HHHHHHHHHHhc--CccCCCc
Q 040904 56 FKNLLEKAAEEY--GYKHDLG 74 (92)
Q Consensus 56 F~~LL~~aeeEf--G~~~~g~ 74 (92)
+-.+|+.-+||| ||-|.|+
T Consensus 23 Id~vLE~NAeeFV~~fVQKGG 43 (44)
T 3m91_B 23 IDDVLEENAEDFVRAYVQKGG 43 (44)
T ss_dssp HHHHHHHTC------------
T ss_pred HHHHHHHhHHHHHHHHHHccC
Confidence 446788888888 8877764
No 32
>1y6i_A Mg-chelatase cofactor GUN4; helix-bundle, porphyrin binding, ligand binding protein; 1.78A {Synechocystis SP} SCOP: a.118.1.22 a.261.1.1
Probab=23.06 E-value=5.6 Score=29.56 Aligned_cols=31 Identities=19% Similarity=0.340 Sum_probs=19.7
Q ss_pred CCCCCCCeEEEEEcCCceEEEEeccCCCcHHHH
Q 040904 25 PNDVPKGHCVVYVGENRSRYIIPITWLNHPKFK 57 (92)
Q Consensus 25 ~~~vpkG~~~VyVG~~~~RfvVp~~~L~hP~F~ 57 (92)
...+|+||+|+.-.--.-| +=.+.|+||.|.
T Consensus 199 ~l~AP~GHLP~~~~lrG~~--l~~~ll~hpa~~ 229 (233)
T 1y6i_A 199 DLSAPQGHLPLLNQLRGVR--VAESLYRHPVWS 229 (233)
T ss_dssp STTSCTTCCSCCCCTTCTH--HHHHHHTSTHHH
T ss_pred eCCCCCCCCCCccccchHH--HHHHHHCCcccc
Confidence 3468999999864211111 445778888874
No 33
>3eh7_A 4-hydroxybutyrate COA-transferase; citrate lyase, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.05A {Porphyromonas gingivalis}
Probab=22.55 E-value=46 Score=26.14 Aligned_cols=42 Identities=26% Similarity=0.379 Sum_probs=24.8
Q ss_pred CCCCCCeEEEEEcCC----------ceEEEEeccCCCcHHHHHHHHH-HHHhcC
Q 040904 26 NDVPKGHCVVYVGEN----------RSRYIIPITWLNHPKFKNLLEK-AAEEYG 68 (92)
Q Consensus 26 ~~vpkG~~~VyVG~~----------~~RfvVp~~~L~hP~F~~LL~~-aeeEfG 68 (92)
...|+..+-++|-|- ++|..-=++ +.||.|++.|.+ |++.||
T Consensus 382 v~~~~~~v~~vVTE~Gva~L~G~~~~Era~~li~-iAhpdfr~~L~~~a~~~~~ 434 (434)
T 3eh7_A 382 VTTLRNEVDYVVTEYGIAQLKGKSLRQRAEALIA-IAHPDFREELTKHLRKRFG 434 (434)
T ss_dssp EEECTTTCCEEEETTEEEECTTCCHHHHHHHHHT-TSCHHHHHHHHHHHHHHHC
T ss_pred ceeCccceeEEEcccEEEECCCCCHHHHHHHHhc-CCCCCcHHHHHHHHHHhhC
Confidence 455677776666431 122221124 999999997765 555565
No 34
>3ezo_A Malonyl COA-acyl carrier protein transacylase; ssgcid, acyl-carrier-protein S-malonyltransferase, acyltransferase, transferase; 2.05A {Burkholderia pseudomallei 1710B}
Probab=22.47 E-value=52 Score=24.16 Aligned_cols=40 Identities=13% Similarity=0.252 Sum_probs=26.9
Q ss_pred CeEEEEEcCCceEEEEeccCCCcHHHHHHHHHHHHhcCcc
Q 040904 31 GHCVVYVGENRSRYIIPITWLNHPKFKNLLEKAAEEYGYK 70 (92)
Q Consensus 31 G~~~VyVG~~~~RfvVp~~~L~hP~F~~LL~~aeeEfG~~ 70 (92)
-..-|+-|...+..=.-.+.+++|.|++.++++.+.+|++
T Consensus 10 ~~~f~F~GQGsQ~~gMg~~L~~~p~fr~~~~~~~~~lg~~ 49 (318)
T 3ezo_A 10 KFAFVFPGQGSQSVGMLNAFADVAVVRETLDEASDALGQD 49 (318)
T ss_dssp CEEEEECCTTCCCTTTTGGGTTCHHHHHHHHHHHHHHSSC
T ss_pred CeEEEECCcchhhhhHHHHHhhCHHHHHHHHHHHHHhCCC
Confidence 4556666654333222233348999999999999998875
No 35
>3pmi_A PWWP domain-containing protein MUM1; structural genomics consortium, SGC, protein binding, nucLeu; HET: UNL; 2.82A {Homo sapiens}
Probab=22.00 E-value=28 Score=23.98 Aligned_cols=29 Identities=21% Similarity=0.460 Sum_probs=24.6
Q ss_pred CceEEEEeccCCCc---HHHHHHHHHHHHhcC
Q 040904 40 NRSRYIIPITWLNH---PKFKNLLEKAAEEYG 68 (92)
Q Consensus 40 ~~~RfvVp~~~L~h---P~F~~LL~~aeeEfG 68 (92)
+++=|-||+.-|+| -.-++|+++|.|.||
T Consensus 47 ekrGi~V~LrrLK~fDC~ek~~L~~rAre~Y~ 78 (134)
T 3pmi_A 47 KMKGFTVSLKSLKHFDCKEKQTLLNQAREDFN 78 (134)
T ss_dssp TSCCEEEEGGGCEETTSTTHHHHHHHHTTTCH
T ss_pred ccCceEeEcccCCCCChHhHHHHHHHHHHHhc
Confidence 56789999888777 467899999999987
No 36
>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus}
Probab=21.85 E-value=68 Score=20.18 Aligned_cols=50 Identities=16% Similarity=0.248 Sum_probs=34.0
Q ss_pred EEEEEcCCceEEEEeccCC--CcHHHHHHHHHHHHhcCccCCCcEEec-CcHHHHHHHHHhh
Q 040904 33 CVVYVGENRSRYIIPITWL--NHPKFKNLLEKAAEEYGYKHDLGIILP-CDERVFRQLTSWL 91 (92)
Q Consensus 33 ~~VyVG~~~~RfvVp~~~L--~hP~F~~LL~~aeeEfG~~~~g~L~IP-C~~~~F~~~l~~l 91 (92)
+.+.||+ ++|-+.-..| ..|.|++++.... ...|.|+ .+.+.|+.+|..+
T Consensus 28 v~l~v~~--~~f~aHk~vLaa~S~yF~~mf~~~~-------~~~i~l~~~~~~~f~~lL~fi 80 (135)
T 2yy9_A 28 ATLDVGG--LVFKAHWSVLACCSHFFQRIYGDGT-------GGSVVLPAGFAEIFGLLLDFF 80 (135)
T ss_dssp EEEEETT--EEEEECHHHHHHHCHHHHHTCC-----------CCEEECGGGHHHHHHHHHHH
T ss_pred eEEEECC--EEEehHHHHHHHhCHHHHHHHcCCC-------CCeEEeCCCCHHHHHHHHHHH
Confidence 4456664 6888877766 4789998876532 3568887 5788999988754
Done!