BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040907
(184 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1M6E|X Chain X, Crystal Structure Of Salicylic Acid Carboxyl
Methyltransferase (Samt)
Length = 359
Score = 125 bits (315), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 69/154 (44%), Positives = 88/154 (57%), Gaps = 10/154 (6%)
Query: 21 MVSGDGAHSYAKNSTLQRRVVDAAKELIYEAISXXXXXXXXXXXASNTFQIADLGCSIGP 80
M G G +SYA NS +QR+V+ K + AI+ + IADLGCS GP
Sbjct: 9 MKGGAGENSYAMNSFIQRQVISITKPITEAAITALYSGDT----VTTRLAIADLGCSSGP 64
Query: 81 NTFIAVQNIIEAVELKLLQPDHQNISSIEFQVLFNDHYDNDFNTLFKSLPHSRKY----F 136
N AV +I+ VE + +N S E+Q+ ND NDFN +F+SLP F
Sbjct: 65 NALFAVTELIKTVEELRKKMGREN--SPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCF 122
Query: 137 AAGVPGSFHNRLFPKATLHFVHSSYSLHWLSKVP 170
GVPGSF+ RLFP+ TLHF+HSSYSL WLS+VP
Sbjct: 123 INGVPGSFYGRLFPRNTLHFIHSSYSLMWLSQVP 156
>pdb|2EFJ|A Chain A, The Structure Of 1,7 Dimethylxanthine Methyltransferase
Length = 384
Score = 110 bits (276), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 62/171 (36%), Positives = 94/171 (54%), Gaps = 22/171 (12%)
Query: 21 MVSGDGAHSYAKNSTLQR---RVVDAAKELIYEAISXXXXXXXXXXXASNTFQIADLGCS 77
M G+G SYAKNS+ RV ++ I E + + F++ DLGC+
Sbjct: 9 MNGGEGDTSYAKNSSYNLFLIRVKPVLEQCIQELLRANLPN------INKCFKVGDLGCA 62
Query: 78 IGPNTFIAVQNIIEAVELKLLQPDHQNISSIEFQVLFNDHYDNDFNTLFKSLP------- 130
GPNTF V++I+++++ K+ Q + Q+ ND + NDFN++FK LP
Sbjct: 63 SGPNTFSTVRDIVQSID-KVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLE 121
Query: 131 --HSRKY---FAAGVPGSFHNRLFPKATLHFVHSSYSLHWLSKVPKELVDQ 176
+ RK +PGSF++RLFP+ ++HF+HS Y LHWLS+VP LV +
Sbjct: 122 KENGRKIGSCLIGAMPGSFYSRLFPEESMHFLHSCYCLHWLSQVPSGLVTE 172
>pdb|2EG5|A Chain A, The Structure Of Xanthosine Methyltransferase
pdb|2EG5|C Chain C, The Structure Of Xanthosine Methyltransferase
pdb|2EG5|E Chain E, The Structure Of Xanthosine Methyltransferase
pdb|2EG5|G Chain G, The Structure Of Xanthosine Methyltransferase
Length = 372
Score = 110 bits (276), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 58/168 (34%), Positives = 93/168 (55%), Gaps = 15/168 (8%)
Query: 21 MVSGDGAHSYAKNSTLQRRVVDAAKELIYEAISXXXXXXXXXXXASNTFQIADLGCSIGP 80
M G+G SYAKNS + V+ K ++ + + + ++ADLGC+ GP
Sbjct: 9 MNGGEGDTSYAKNSAYNQLVLAKVKPVLEQCVRELLRANLPN--INKCIKVADLGCASGP 66
Query: 81 NTFIAVQNIIEAVELKLLQPDHQNISSIEFQVLFNDHYDNDFNTLFKSLP---------H 131
NT + V++I+++++ K+ Q + Q+ ND + NDFN++FK LP +
Sbjct: 67 NTLLTVRDIVQSID-KVGQEKKNELERPTIQIFLNDLFPNDFNSVFKLLPSFYRKLEKEN 125
Query: 132 SRKY---FAAGVPGSFHNRLFPKATLHFVHSSYSLHWLSKVPKELVDQ 176
RK +PGSF++RLFP+ ++HF+HS Y L WLS+VP LV +
Sbjct: 126 GRKIGSCLIGAMPGSFYSRLFPEESMHFLHSCYCLQWLSQVPSGLVTE 173
>pdb|3B5I|A Chain A, Crystal Structure Of Indole-3-Acetic Acid
Methyltransferase
pdb|3B5I|B Chain B, Crystal Structure Of Indole-3-Acetic Acid
Methyltransferase
Length = 374
Score = 108 bits (269), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 65/178 (36%), Positives = 87/178 (48%), Gaps = 21/178 (11%)
Query: 21 MVSGDGAHSYAKNSTLQRRVVDAAKELIYEAISXXXXXXXXXXXASNTFQIADLGCSIGP 80
M G G SYA NS Q + L+ E + + F DLGCS G
Sbjct: 9 MKGGKGQDSYANNSLAQAMHARSMLHLLEETLENVHLNSSA---SPPPFTAVDLGCSSGA 65
Query: 81 NTFIAVQNIIEAVELKLLQPDHQNISSIEFQVLFNDHYDNDFNTLFKSLP---------- 130
NT + I++ + + D I EF F+D NDFNTLF+ LP
Sbjct: 66 NTVHIIDFIVKHISKRF---DAAGIDPPEFTAFFSDLPSNDFNTLFQLLPPLVSNTCMEE 122
Query: 131 -----HSRKYFAAGVPGSFHNRLFPKATLHFVHSSYSLHWLSKVPKELVDQNSPLWNK 183
+R YF AGVPGSF+ RLFP T+ F HS++SLHWLS+VP+ + D+ S +N+
Sbjct: 123 CLAADGNRSYFVAGVPGSFYRRLFPARTIDFFHSAFSLHWLSQVPESVTDRRSAAYNR 180
>pdb|3TZ6|A Chain A, Crystal Structure Of Aspartate Semialdehyde Dehydrogenase
Complexed With Inhibitor Smcs (Cys) And Phosphate From
Mycobacterium Tuberculosis H37rv
Length = 344
Score = 29.3 bits (64), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 22/39 (56%)
Query: 13 KLMAQSYPMVSGDGAHSYAKNSTLQRRVVDAAKELIYEA 51
+L+ SY VSG G A+ + R V+ A++L+Y+
Sbjct: 149 RLVVSSYQAVSGSGLAGVAELAEQARAVIGGAEQLVYDG 187
>pdb|3VOS|A Chain A, Crystal Structure Of Aspartate Semialdehyde Dehydrogenase
Complexed With Glycerol And Sulfate From Mycobacterium
Tuberculosis H37rv
Length = 362
Score = 29.3 bits (64), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 22/39 (56%)
Query: 13 KLMAQSYPMVSGDGAHSYAKNSTLQRRVVDAAKELIYEA 51
+L+ SY VSG G A+ + R V+ A++L+Y+
Sbjct: 167 RLVVSSYQAVSGSGLAGVAELAEQARAVIGGAEQLVYDG 205
>pdb|3T7R|A Chain A, Crystal Structure Of Apo Bvu_3255, A Methyltransferase
From Bacteroides Vulgatus Atcc 8482
pdb|3T7R|B Chain B, Crystal Structure Of Apo Bvu_3255, A Methyltransferase
From Bacteroides Vulgatus Atcc 8482
pdb|3T7S|A Chain A, Crystal Structure Of Complex Of Sam And Bvu_3255, A
Methyltransferase From Bacteroides Vulgatus Atcc 8482
pdb|3T7S|B Chain B, Crystal Structure Of Complex Of Sam And Bvu_3255, A
Methyltransferase From Bacteroides Vulgatus Atcc 8482
pdb|3T7S|C Chain C, Crystal Structure Of Complex Of Sam And Bvu_3255, A
Methyltransferase From Bacteroides Vulgatus Atcc 8482
pdb|3T7S|D Chain D, Crystal Structure Of Complex Of Sam And Bvu_3255, A
Methyltransferase From Bacteroides Vulgatus Atcc 8482
pdb|3T7T|A Chain A, Crystal Structure Of Complex Of Sah And Bvu_3255, A
Methyltransferase From Bacteroides Vulgatus Atcc 8482
pdb|3T7T|B Chain B, Crystal Structure Of Complex Of Sah And Bvu_3255, A
Methyltransferase From Bacteroides Vulgatus Atcc 8482
pdb|3T7T|C Chain C, Crystal Structure Of Complex Of Sah And Bvu_3255, A
Methyltransferase From Bacteroides Vulgatus Atcc 8482
pdb|3T7T|D Chain D, Crystal Structure Of Complex Of Sah And Bvu_3255, A
Methyltransferase From Bacteroides Vulgatus Atcc 8482
Length = 268
Score = 27.3 bits (59), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 43/99 (43%), Gaps = 18/99 (18%)
Query: 66 SNTFQIADLGCSIGPNTFIAVQNIIEAVELKLLQPDHQNISSIEFQVLFNDHYDNDFNTL 125
+N IADLGC G T I Q++ I+ I+F F + ++ + L
Sbjct: 51 TNKSLIADLGCGTGGQTMILAQHV------------PGKITGIDFFPGFIERFNKNAEKL 98
Query: 126 FKSLPHSRKYFAAGVPGSFHNRLFPKATLHFVHSSYSLH 164
+L + K G+ GS + F K +L + S +++
Sbjct: 99 --NLQNRVK----GIVGSMDDLSFEKDSLDLIWSEGAIY 131
>pdb|3E7P|A Chain A, Crystal Structure Of Of Putative Methyltransferase From
Bacteroides Vulgatus Atcc 8482
Length = 270
Score = 27.3 bits (59), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 43/99 (43%), Gaps = 18/99 (18%)
Query: 66 SNTFQIADLGCSIGPNTFIAVQNIIEAVELKLLQPDHQNISSIEFQVLFNDHYDNDFNTL 125
+N IADLGC G T I Q++ I+ I+F F + ++ + L
Sbjct: 46 TNKSLIADLGCGTGGQTMILAQHV------------PGKITGIDFFPGFIERFNKNAEKL 93
Query: 126 FKSLPHSRKYFAAGVPGSFHNRLFPKATLHFVHSSYSLH 164
+L + K G+ GS + F K +L + S +++
Sbjct: 94 --NLQNRVK----GIVGSMDDLSFEKDSLDLIWSEGAIY 126
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.132 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,007,562
Number of Sequences: 62578
Number of extensions: 174516
Number of successful extensions: 434
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 416
Number of HSP's gapped (non-prelim): 8
length of query: 184
length of database: 14,973,337
effective HSP length: 93
effective length of query: 91
effective length of database: 9,153,583
effective search space: 832976053
effective search space used: 832976053
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (23.1 bits)