Query 040907
Match_columns 184
No_of_seqs 113 out of 388
Neff 5.6
Searched_HMMs 46136
Date Fri Mar 29 12:58:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040907.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040907hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02668 indole-3-acetate carb 100.0 3E-60 6.5E-65 426.4 15.0 163 15-184 15-193 (386)
2 PF03492 Methyltransf_7: SAM d 100.0 3.7E-52 8.1E-57 367.9 9.2 131 48-184 1-138 (334)
3 TIGR02072 BioC biotin biosynth 97.3 0.00059 1.3E-08 55.4 6.4 107 28-168 7-113 (240)
4 PRK01683 trans-aconitate 2-met 96.3 0.009 1.9E-07 50.1 5.6 102 27-168 6-108 (258)
5 PRK10258 biotin biosynthesis p 95.9 0.01 2.2E-07 49.7 4.3 101 29-169 19-119 (251)
6 TIGR02752 MenG_heptapren 2-hep 95.5 0.02 4.2E-07 47.1 4.3 81 68-168 46-129 (231)
7 PRK14103 trans-aconitate 2-met 95.5 0.027 5.9E-07 47.4 5.2 100 28-168 5-104 (255)
8 PRK06202 hypothetical protein; 95.5 0.055 1.2E-06 44.8 6.9 85 66-168 59-144 (232)
9 KOG2940 Predicted methyltransf 95.2 0.014 3E-07 50.9 2.6 75 69-173 74-157 (325)
10 PF13847 Methyltransf_31: Meth 95.0 0.084 1.8E-06 40.8 6.4 82 67-169 3-89 (152)
11 TIGR03587 Pse_Me-ase pseudamin 94.7 0.11 2.3E-06 43.0 6.6 76 68-167 44-119 (204)
12 PF08241 Methyltransf_11: Meth 94.6 0.052 1.1E-06 37.3 3.9 73 72-166 1-73 (95)
13 PF13489 Methyltransf_23: Meth 93.8 0.029 6.3E-07 42.6 1.2 71 66-168 21-93 (161)
14 PRK11207 tellurite resistance 93.7 0.16 3.4E-06 41.5 5.5 19 68-86 31-49 (197)
15 PRK00216 ubiE ubiquinone/menaq 93.5 0.13 2.7E-06 41.8 4.6 85 68-171 52-139 (239)
16 PRK07580 Mg-protoporphyrin IX 93.4 0.65 1.4E-05 37.8 8.6 20 67-86 63-82 (230)
17 PRK12335 tellurite resistance 92.5 0.22 4.8E-06 42.9 5.0 18 70-87 123-140 (287)
18 PF12847 Methyltransf_18: Meth 92.5 0.24 5.1E-06 35.6 4.4 45 69-117 3-61 (112)
19 smart00138 MeTrc Methyltransfe 92.5 0.28 6.1E-06 42.1 5.5 92 66-167 98-217 (264)
20 PRK05785 hypothetical protein; 91.9 0.15 3.2E-06 42.8 3.0 77 68-171 52-128 (226)
21 PRK11188 rrmJ 23S rRNA methylt 91.4 0.35 7.6E-06 40.1 4.7 72 68-167 52-131 (209)
22 TIGR00740 methyltransferase, p 91.4 0.25 5.4E-06 41.1 3.8 79 68-167 54-136 (239)
23 PRK06922 hypothetical protein; 91.0 0.37 8.1E-06 47.2 5.0 23 148-170 482-505 (677)
24 PRK15451 tRNA cmo(5)U34 methyl 90.5 1.4 3E-05 37.1 7.6 19 67-85 56-74 (247)
25 PLN02244 tocopherol O-methyltr 90.5 2 4.3E-05 38.2 8.9 21 67-87 118-138 (340)
26 COG2226 UbiE Methylase involve 90.3 0.3 6.6E-06 42.0 3.4 89 67-173 51-139 (238)
27 PRK08317 hypothetical protein; 90.3 1.3 2.9E-05 35.5 7.1 82 67-168 19-102 (241)
28 TIGR02021 BchM-ChlM magnesium 90.0 4 8.7E-05 33.3 9.8 20 67-86 55-74 (219)
29 TIGR01934 MenG_MenH_UbiE ubiqu 89.9 0.84 1.8E-05 36.5 5.6 83 67-168 39-121 (223)
30 PRK00121 trmB tRNA (guanine-N( 89.5 0.34 7.3E-06 39.7 3.0 109 36-167 14-125 (202)
31 PTZ00098 phosphoethanolamine N 89.3 0.91 2E-05 38.8 5.6 79 67-167 52-131 (263)
32 PF08242 Methyltransf_12: Meth 88.3 0.57 1.2E-05 33.2 3.2 78 72-168 1-81 (99)
33 PLN02336 phosphoethanolamine N 88.0 0.92 2E-05 41.6 5.1 81 68-168 267-347 (475)
34 PLN02490 MPBQ/MSBQ methyltrans 87.8 1.2 2.7E-05 40.1 5.6 81 67-168 113-193 (340)
35 smart00828 PKS_MT Methyltransf 87.4 1.3 2.8E-05 36.1 5.1 17 70-86 2-18 (224)
36 PRK11873 arsM arsenite S-adeno 87.2 0.67 1.5E-05 39.2 3.5 27 142-168 135-161 (272)
37 TIGR02081 metW methionine bios 87.2 0.45 9.9E-06 38.3 2.3 20 149-168 71-90 (194)
38 COG4106 Tam Trans-aconitate me 87.2 0.65 1.4E-05 40.2 3.3 25 146-170 85-109 (257)
39 PLN02233 ubiquinone biosynthes 87.0 1.2 2.6E-05 38.1 4.9 20 149-168 141-160 (261)
40 PLN02336 phosphoethanolamine N 85.1 1.1 2.4E-05 41.0 4.0 20 149-168 99-118 (475)
41 PRK14121 tRNA (guanine-N(7)-)- 83.9 1.9 4.2E-05 39.6 5.0 19 69-87 124-142 (390)
42 TIGR00091 tRNA (guanine-N(7)-) 83.7 1.7 3.7E-05 35.2 4.2 19 69-87 18-36 (194)
43 PF01209 Ubie_methyltran: ubiE 82.8 0.33 7.1E-06 41.2 -0.5 84 67-171 47-134 (233)
44 cd02440 AdoMet_MTases S-adenos 81.4 2.3 5.1E-05 28.2 3.6 76 70-166 1-79 (107)
45 PRK00312 pcm protein-L-isoaspa 81.0 8.7 0.00019 31.2 7.4 19 67-85 78-96 (212)
46 PF00891 Methyltransf_2: O-met 80.9 4.9 0.00011 33.3 6.0 71 66-164 99-169 (241)
47 TIGR02716 C20_methyl_CrtF C-20 80.2 5.8 0.00013 34.2 6.4 76 66-165 148-227 (306)
48 PRK15068 tRNA mo(5)U34 methylt 79.4 1.5 3.3E-05 38.7 2.6 77 69-168 124-204 (322)
49 KOG3010 Methyltransferase [Gen 78.5 1.9 4.1E-05 37.7 2.8 17 150-166 97-113 (261)
50 PF03848 TehB: Tellurite resis 78.4 1.2 2.6E-05 37.1 1.5 46 68-119 31-88 (192)
51 PTZ00146 fibrillarin; Provisio 77.2 3.8 8.2E-05 36.4 4.4 20 69-88 134-153 (293)
52 TIGR03438 probable methyltrans 76.6 3.5 7.6E-05 35.9 4.0 23 67-89 63-85 (301)
53 PRK11088 rrmA 23S rRNA methylt 75.9 6.2 0.00014 33.6 5.3 20 68-87 86-105 (272)
54 COG2242 CobL Precorrin-6B meth 73.4 10 0.00022 31.6 5.8 62 69-140 36-111 (187)
55 KOG1541 Predicted protein carb 71.0 2.2 4.8E-05 37.1 1.3 43 30-82 23-65 (270)
56 PHA03412 putative methyltransf 69.5 2.6 5.7E-05 36.4 1.5 80 68-160 50-171 (241)
57 TIGR00477 tehB tellurite resis 69.4 2.8 6E-05 34.1 1.5 19 68-86 31-49 (195)
58 PRK15001 SAM-dependent 23S rib 68.4 15 0.00033 33.5 6.3 18 69-86 230-247 (378)
59 PF13649 Methyltransf_25: Meth 67.2 2.9 6.4E-05 29.7 1.1 18 71-88 1-18 (101)
60 PRK00107 gidB 16S rRNA methylt 66.8 9 0.00019 31.4 4.1 19 68-86 46-64 (187)
61 PRK08287 cobalt-precorrin-6Y C 66.7 6.8 0.00015 31.2 3.3 20 68-87 32-51 (187)
62 PRK07402 precorrin-6B methylas 65.5 21 0.00045 28.7 5.9 45 69-118 42-100 (196)
63 TIGR02469 CbiT precorrin-6Y C5 64.7 4.7 0.0001 28.9 1.8 19 69-87 21-39 (124)
64 smart00650 rADc Ribosomal RNA 63.1 13 0.00029 29.1 4.3 20 69-88 15-34 (169)
65 PRK04266 fibrillarin; Provisio 62.7 4.6 9.9E-05 34.1 1.6 21 68-88 73-93 (226)
66 PF05148 Methyltransf_8: Hypot 62.3 3.7 8.1E-05 35.1 1.0 63 65-164 70-133 (219)
67 PRK00274 ksgA 16S ribosomal RN 61.3 41 0.00088 28.8 7.3 48 69-124 44-103 (272)
68 TIGR00080 pimt protein-L-isoas 61.0 11 0.00023 30.9 3.5 20 68-87 78-97 (215)
69 PRK11036 putative S-adenosyl-L 60.7 10 0.00022 31.9 3.4 21 66-86 43-63 (255)
70 TIGR03533 L3_gln_methyl protei 59.9 11 0.00024 32.6 3.6 21 68-88 122-142 (284)
71 TIGR00478 tly hemolysin TlyA f 59.5 5.3 0.00012 33.9 1.5 22 67-88 75-96 (228)
72 PF01728 FtsJ: FtsJ-like methy 59.0 8.5 0.00018 30.4 2.5 20 66-85 22-41 (181)
73 TIGR00138 gidB 16S rRNA methyl 56.2 7.8 0.00017 31.3 1.9 18 68-85 43-60 (181)
74 KOG3045 Predicted RNA methylas 55.8 6.1 0.00013 35.2 1.2 19 65-83 178-196 (325)
75 KOG2904 Predicted methyltransf 55.0 13 0.00028 33.4 3.1 54 69-126 150-217 (328)
76 PF02353 CMAS: Mycolic acid cy 54.9 51 0.0011 28.5 6.9 45 69-117 64-121 (273)
77 PLN02396 hexaprenyldihydroxybe 53.9 17 0.00037 32.4 3.8 18 68-85 132-149 (322)
78 COG2813 RsmC 16S RNA G1207 met 53.7 15 0.00032 32.9 3.4 21 69-89 160-180 (300)
79 PF05401 NodS: Nodulation prot 53.6 25 0.00055 29.7 4.6 68 66-168 42-121 (201)
80 PF05175 MTS: Methyltransferas 52.8 8.5 0.00018 30.4 1.6 20 68-87 32-51 (170)
81 COG2263 Predicted RNA methylas 50.7 8.4 0.00018 32.5 1.3 53 68-128 46-111 (198)
82 PF12147 Methyltransf_20: Puta 48.8 63 0.0014 29.1 6.5 40 39-81 110-149 (311)
83 TIGR00438 rrmJ cell division p 48.5 12 0.00027 29.7 1.9 20 68-87 33-52 (188)
84 PRK13944 protein-L-isoaspartat 48.5 21 0.00045 29.1 3.3 19 68-86 73-91 (205)
85 TIGR03534 RF_mod_PrmC protein- 48.2 14 0.00029 30.3 2.1 21 67-87 87-107 (251)
86 TIGR00537 hemK_rel_arch HemK-r 48.1 9.6 0.00021 30.1 1.2 19 69-87 21-39 (179)
87 PRK13942 protein-L-isoaspartat 47.2 22 0.00047 29.3 3.2 19 68-86 77-95 (212)
88 TIGR00452 methyltransferase, p 47.2 11 0.00023 33.6 1.4 18 69-86 123-140 (314)
89 TIGR01983 UbiG ubiquinone bios 46.9 48 0.001 26.6 5.2 20 67-86 45-64 (224)
90 KOG2361 Predicted methyltransf 46.0 94 0.002 27.4 7.0 139 10-172 10-160 (264)
91 PF13679 Methyltransf_32: Meth 46.0 35 0.00075 26.1 4.0 22 66-87 24-45 (141)
92 PRK14896 ksgA 16S ribosomal RN 45.9 40 0.00088 28.5 4.8 47 68-121 30-88 (258)
93 TIGR00536 hemK_fam HemK family 45.6 24 0.00052 30.3 3.3 19 69-87 116-134 (284)
94 COG4123 Predicted O-methyltran 42.6 23 0.00049 30.8 2.7 23 66-88 43-65 (248)
95 PF05185 PRMT5: PRMT5 arginine 42.4 37 0.00081 31.7 4.3 74 67-151 186-278 (448)
96 PRK09328 N5-glutamine S-adenos 42.4 14 0.0003 30.9 1.4 22 67-88 108-129 (275)
97 PRK14966 unknown domain/N5-glu 42.2 58 0.0013 30.5 5.5 45 69-119 253-311 (423)
98 PF03291 Pox_MCEL: mRNA cappin 41.9 1.3E+02 0.0027 27.0 7.5 17 67-83 62-78 (331)
99 TIGR00406 prmA ribosomal prote 41.6 14 0.0003 31.9 1.3 17 69-85 161-177 (288)
100 PHA02734 coat protein; Provisi 41.2 14 0.00031 29.2 1.2 41 80-121 49-90 (149)
101 PRK00517 prmA ribosomal protei 41.2 12 0.00026 31.5 0.8 18 68-85 120-137 (250)
102 COG2230 Cfa Cyclopropane fatty 41.1 84 0.0018 27.8 6.1 58 68-131 73-143 (283)
103 cd05721 IgV_CTLA-4 Immunoglobu 41.0 15 0.00033 28.3 1.3 26 148-173 10-43 (115)
104 PRK11805 N5-glutamine S-adenos 40.3 33 0.00072 30.1 3.5 20 69-88 135-154 (307)
105 TIGR03704 PrmC_rel_meth putati 40.3 29 0.00062 29.5 3.0 20 68-87 87-106 (251)
106 PTZ00338 dimethyladenosine tra 39.7 39 0.00085 29.6 3.8 50 69-122 38-99 (294)
107 PRK10909 rsmD 16S rRNA m(2)G96 39.2 36 0.00077 28.2 3.3 19 69-87 55-73 (199)
108 PRK04148 hypothetical protein; 39.0 1.1E+02 0.0023 24.1 5.8 45 67-123 16-73 (134)
109 PLN02585 magnesium protoporphy 37.5 20 0.00044 31.8 1.7 20 68-87 145-164 (315)
110 PRK11705 cyclopropane fatty ac 37.2 36 0.00078 30.9 3.3 20 68-87 168-187 (383)
111 PRK14968 putative methyltransf 37.0 21 0.00045 27.7 1.5 18 69-86 25-42 (188)
112 PRK14902 16S rRNA methyltransf 36.8 55 0.0012 30.0 4.5 20 69-88 252-271 (444)
113 PRK14967 putative methyltransf 36.7 15 0.00034 30.1 0.8 19 69-87 38-56 (223)
114 PF08003 Methyltransf_9: Prote 36.5 19 0.0004 32.5 1.3 19 69-87 117-135 (315)
115 PF13659 Methyltransf_26: Meth 36.4 28 0.0006 24.8 2.0 21 69-89 2-22 (117)
116 PF07021 MetW: Methionine bios 35.7 18 0.0004 30.3 1.1 24 149-173 71-94 (193)
117 TIGR03840 TMPT_Se_Te thiopurin 35.5 23 0.00049 29.5 1.6 20 69-88 36-55 (213)
118 PRK03522 rumB 23S rRNA methylu 35.1 51 0.0011 28.8 3.8 19 69-87 175-193 (315)
119 PRK09489 rsmC 16S ribosomal RN 34.9 23 0.0005 31.7 1.6 16 70-85 199-214 (342)
120 PRK14903 16S rRNA methyltransf 33.9 58 0.0013 30.0 4.1 20 69-88 239-258 (431)
121 COG1189 Predicted rRNA methyla 33.7 44 0.00094 29.1 3.0 34 48-88 67-100 (245)
122 PRK00377 cbiT cobalt-precorrin 33.6 28 0.00061 28.0 1.8 20 67-86 40-59 (198)
123 PRK13943 protein-L-isoaspartat 32.6 48 0.001 29.6 3.3 20 68-87 81-100 (322)
124 PLN02232 ubiquinone biosynthes 32.6 27 0.00058 27.3 1.5 20 149-168 40-59 (160)
125 cd07378 MPP_ACP5 Homo sapiens 32.5 1.3E+02 0.0027 25.1 5.7 40 69-118 4-43 (277)
126 COG2264 PrmA Ribosomal protein 32.2 24 0.00051 31.5 1.2 20 67-86 162-181 (300)
127 TIGR03439 methyl_EasF probable 31.6 76 0.0016 28.4 4.3 25 66-90 75-99 (319)
128 PF06325 PrmA: Ribosomal prote 30.7 29 0.00063 30.7 1.5 18 70-87 164-181 (295)
129 TIGR00095 RNA methyltransferas 29.3 68 0.0015 26.0 3.4 20 69-88 51-70 (189)
130 KOG4589 Cell division protein 28.4 72 0.0016 27.3 3.4 22 67-88 69-90 (232)
131 TIGR02727 MTHFS_bact 5,10-meth 28.2 25 0.00054 28.2 0.6 40 136-175 131-172 (181)
132 PRK13255 thiopurine S-methyltr 27.2 39 0.00085 28.2 1.7 21 68-88 38-58 (218)
133 TIGR00755 ksgA dimethyladenosi 27.1 73 0.0016 26.7 3.3 20 68-87 30-49 (253)
134 PRK05134 bifunctional 3-demeth 27.1 41 0.00089 27.4 1.7 19 68-86 49-67 (233)
135 TIGR03099 dCO2ase_PEP1 pyridox 26.3 4.7E+02 0.01 23.3 9.6 14 2-15 164-177 (398)
136 PRK10901 16S rRNA methyltransf 25.8 43 0.00092 30.7 1.8 20 69-88 246-265 (427)
137 TIGR01444 fkbM_fam methyltrans 25.4 34 0.00074 25.4 0.9 18 70-87 1-18 (143)
138 PF03514 GRAS: GRAS domain fam 25.3 2.5E+02 0.0055 25.4 6.7 45 66-121 109-153 (374)
139 PRK13168 rumA 23S rRNA m(5)U19 25.3 89 0.0019 28.7 3.8 19 69-87 299-317 (443)
140 PF01739 CheR: CheR methyltran 25.2 84 0.0018 26.0 3.3 45 66-119 30-74 (196)
141 KOG3191 Predicted N6-DNA-methy 25.1 1.2E+02 0.0026 25.8 4.1 38 45-90 29-66 (209)
142 COG2890 HemK Methylase of poly 24.4 34 0.00074 29.7 0.8 21 70-90 113-133 (280)
143 PRK01544 bifunctional N5-gluta 24.3 40 0.00086 31.8 1.3 20 68-87 139-158 (506)
144 PLN03075 nicotianamine synthas 24.3 53 0.0011 29.2 2.0 20 67-86 123-142 (296)
145 PRK02289 4-oxalocrotonate taut 24.3 79 0.0017 20.7 2.4 41 79-122 11-51 (60)
146 PRK14904 16S rRNA methyltransf 23.6 53 0.0012 30.2 2.0 19 69-87 252-270 (445)
147 PRK14901 16S rRNA methyltransf 23.5 59 0.0013 29.8 2.3 20 69-88 254-273 (434)
148 TIGR00446 nop2p NOL1/NOP2/sun 23.3 48 0.001 28.2 1.5 19 69-87 73-91 (264)
149 PRK10333 5-formyltetrahydrofol 23.2 34 0.00074 27.7 0.5 39 136-175 125-167 (182)
150 PHA03411 putative methyltransf 23.1 46 0.001 29.4 1.4 18 69-86 66-83 (279)
151 PLN03065 isocitrate dehydrogen 22.8 1.8E+02 0.004 27.8 5.4 43 46-97 426-477 (483)
152 cd00491 4Oxalocrotonate_Tautom 22.6 1.9E+02 0.004 18.2 3.9 44 76-122 7-50 (58)
153 PRK00811 spermidine synthase; 22.1 1.2E+02 0.0025 26.3 3.7 22 66-87 75-96 (283)
154 PRK11760 putative 23S rRNA C24 22.0 55 0.0012 30.0 1.7 21 67-87 211-231 (357)
155 KOG1541 Predicted protein carb 21.4 50 0.0011 28.9 1.3 22 149-170 108-129 (270)
156 PRK04457 spermidine synthase; 20.7 2E+02 0.0043 24.5 4.8 20 67-86 66-85 (262)
157 TIGR00987 himA integration hos 20.6 1.5E+02 0.0033 21.3 3.6 36 36-78 17-52 (96)
158 COG4976 Predicted methyltransf 20.2 51 0.0011 29.1 1.0 14 70-83 128-141 (287)
159 smart00400 ZnF_CHCC zinc finge 20.1 90 0.0019 20.1 2.0 19 71-89 24-42 (55)
No 1
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=100.00 E-value=3e-60 Score=426.38 Aligned_cols=163 Identities=39% Similarity=0.646 Sum_probs=148.8
Q ss_pred hcccccccCCCCCchhHHhhHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCCceEEEeeecCCCcccHHHHHHHHHHHH
Q 040907 15 MAQSYPMVSGDGAHSYAKNSTLQRRVVDAAKELIYEAISDKLDLKLLKFDASNTFQIADLGCSIGPNTFIAVQNIIEAVE 94 (184)
Q Consensus 15 ~~~~~~M~gG~G~~sY~~nS~~Q~~~i~~~~p~l~~ai~~~~~~~~~~~~~~~~~~IADlGCS~G~NSl~~v~~iI~~i~ 94 (184)
++++|||+||+|++||++||.+|++++..++|+|++||+++.. . . ...++++|||||||+|+||+.+|++||++|+
T Consensus 15 ~~~~l~M~gG~g~~SYa~nS~~Q~~~~~~~k~~leeai~~~~~-~--~-~p~~~~~iaDlGcs~G~ntl~~vs~iI~~i~ 90 (386)
T PLN02668 15 LEKLLCMKGGKGEGSYANNSQAQALHARSMLHLLEETLDNVHL-N--S-SPEVPFTAVDLGCSSGSNTIHIIDVIVKHMS 90 (386)
T ss_pred eccccccCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHhcc-c--c-CCCcceeEEEecCCCCccHHHHHHHHHHHHH
Confidence 6789999999999999999999999999999999999988642 2 0 1136899999999999999999999999999
Q ss_pred HHhcCCCCCCCCCcceEEEeCCCCCCchHHHhhhCCCC----------------CceEEeecCCcccccccCCCccceee
Q 040907 95 LKLLQPDHQNISSIEFQVLFNDHYDNDFNTLFKSLPHS----------------RKYFAAGVPGSFHNRLFPKATLHFVH 158 (184)
Q Consensus 95 ~~~~~~~~~~~~~pe~qv~~nDLP~NDFNtLF~~L~~~----------------~~~f~~gvpgSFY~rLfP~~Svh~~~ 158 (184)
++|++.+ ..+|||||||||||+||||+||++|+.+ ++||++|||||||+||||++||||+|
T Consensus 91 ~~~~~~~---~~~pe~qv~~nDLP~NDFNtlF~~L~~~~~~~~~~~~~~~~~~~~~~f~~gvpGSFY~RLfP~~Slh~~~ 167 (386)
T PLN02668 91 KRYESAG---LDPPEFSAFFSDLPSNDFNTLFQLLPPLANYGGSMEECLAASGHRSYFAAGVPGSFYRRLFPARSIDVFH 167 (386)
T ss_pred HHhhhcC---CCCCcceEEecCCCCCCHHHHHhhchhhhhhhcchhhhccccCCCceEEEecCccccccccCCCceEEEE
Confidence 9998744 3478999999999999999999999852 24999999999999999999999999
Q ss_pred eccccccccCCCccccccCCCCCCCC
Q 040907 159 SSYSLHWLSKVPKELVDQNSPLWNKE 184 (184)
Q Consensus 159 Ss~aLHWLS~vP~~l~d~~~~~~nk~ 184 (184)
|+||||||||+|+++.|+.+++||||
T Consensus 168 Ss~slHWLS~vP~~l~d~~s~~~Nkg 193 (386)
T PLN02668 168 SAFSLHWLSQVPESVTDKRSAAYNKG 193 (386)
T ss_pred eeccceecccCchhhccCCcccccCC
Confidence 99999999999999999999999997
No 2
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=100.00 E-value=3.7e-52 Score=367.87 Aligned_cols=131 Identities=56% Similarity=0.965 Sum_probs=106.3
Q ss_pred HHHHHHhhhhhhhccCCCCCceEEEeeecCCCcccHHHHHHHHHHHHHHhcCCCCCCCCCcceEEEeCCCCCCchHHHhh
Q 040907 48 IYEAISDKLDLKLLKFDASNTFQIADLGCSIGPNTFIAVQNIIEAVELKLLQPDHQNISSIEFQVLFNDHYDNDFNTLFK 127 (184)
Q Consensus 48 l~~ai~~~~~~~~~~~~~~~~~~IADlGCS~G~NSl~~v~~iI~~i~~~~~~~~~~~~~~pe~qv~~nDLP~NDFNtLF~ 127 (184)
||+||++++... ..+++|+|||||||+|+||+.+|+.||++|+++|+..+. .++|||||||||||+||||+||+
T Consensus 1 ~~~ai~~~~~~~----~~~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~--~~~~e~~v~~nDlP~NDFn~lF~ 74 (334)
T PF03492_consen 1 LEEAIKELYNSS----NNPKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNN--QPPPEFQVFFNDLPSNDFNTLFK 74 (334)
T ss_dssp -HHHHHHHHHST----TTTTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT---SS--EEEEEEEE-TTS-HHHHHH
T ss_pred ChHHHHHHHhcC----CCCCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcC--CCCCeEEEEeCCCCCccHHHHHH
Confidence 588999876432 368899999999999999999999999999999987651 25889999999999999999999
Q ss_pred hCCCC-------CceEEeecCCcccccccCCCccceeeeccccccccCCCccccccCCCCCCCC
Q 040907 128 SLPHS-------RKYFAAGVPGSFHNRLFPKATLHFVHSSYSLHWLSKVPKELVDQNSPLWNKE 184 (184)
Q Consensus 128 ~L~~~-------~~~f~~gvpgSFY~rLfP~~Svh~~~Ss~aLHWLS~vP~~l~d~~~~~~nk~ 184 (184)
+|+.+ ++||++|||||||+||||++||||+||+||||||||+|+++.|+.+|+||||
T Consensus 75 ~l~~~~~~~~~~~~~f~~gvpgSFy~rLfP~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg 138 (334)
T PF03492_consen 75 SLPSFQQSLKKFRNYFVSGVPGSFYGRLFPSNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKG 138 (334)
T ss_dssp CHHHHHHHHHHTTSEEEEEEES-TTS--S-TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTT
T ss_pred hChhhhhccCCCceEEEEecCchhhhccCCCCceEEEEEechhhhcccCCcccccccccccccC
Confidence 99975 7999999999999999999999999999999999999999999999999997
No 3
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=97.34 E-value=0.00059 Score=55.39 Aligned_cols=107 Identities=16% Similarity=0.270 Sum_probs=68.5
Q ss_pred chhHHhhHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCCceEEEeeecCCCcccHHHHHHHHHHHHHHhcCCCCCCCCC
Q 040907 28 HSYAKNSTLQRRVVDAAKELIYEAISDKLDLKLLKFDASNTFQIADLGCSIGPNTFIAVQNIIEAVELKLLQPDHQNISS 107 (184)
Q Consensus 28 ~sY~~nS~~Q~~~i~~~~p~l~~ai~~~~~~~~~~~~~~~~~~IADlGCS~G~NSl~~v~~iI~~i~~~~~~~~~~~~~~ 107 (184)
.+|.+.+..|+.......+.+... ....+.+|.|+||.+|..+..+.. . -
T Consensus 7 ~~y~~~~~~q~~~~~~l~~~~~~~------------~~~~~~~vLDlG~G~G~~~~~l~~--------~----------~ 56 (240)
T TIGR02072 7 KTYDRHAKIQREMAKRLLALLKEK------------GIFIPASVLDIGCGTGYLTRALLK--------R----------F 56 (240)
T ss_pred hchhHHHHHHHHHHHHHHHHhhhh------------ccCCCCeEEEECCCccHHHHHHHH--------h----------C
Confidence 568888888876555544433311 013347899999999987554422 1 1
Q ss_pred cceEEEeCCCCCCchHHHhhhCCCCCceEEeecCCcccccccCCCccceeeeccccccccC
Q 040907 108 IEFQVLFNDHYDNDFNTLFKSLPHSRKYFAAGVPGSFHNRLFPKATLHFVHSSYSLHWLSK 168 (184)
Q Consensus 108 pe~qv~~nDLP~NDFNtLF~~L~~~~~~f~~gvpgSFY~rLfP~~Svh~~~Ss~aLHWLS~ 168 (184)
|..+++..|+.....+..-+.++. +-.| +-+++-...+|+++.|++++..++||+..
T Consensus 57 ~~~~~~~~D~~~~~~~~~~~~~~~-~~~~---~~~d~~~~~~~~~~fD~vi~~~~l~~~~~ 113 (240)
T TIGR02072 57 PQAEFIALDISAGMLAQAKTKLSE-NVQF---ICGDAEKLPLEDSSFDLIVSNLALQWCDD 113 (240)
T ss_pred CCCcEEEEeChHHHHHHHHHhcCC-CCeE---EecchhhCCCCCCceeEEEEhhhhhhccC
Confidence 235677888766555555555542 1122 22455666778999999999999999854
No 4
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=96.28 E-value=0.009 Score=50.11 Aligned_cols=102 Identities=21% Similarity=0.273 Sum_probs=57.6
Q ss_pred CchhHHhhHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCCceEEEeeecCCCcccHHHHHHHHHHHHHHhcCCCCCCCC
Q 040907 27 AHSYAKNSTLQRRVVDAAKELIYEAISDKLDLKLLKFDASNTFQIADLGCSIGPNTFIAVQNIIEAVELKLLQPDHQNIS 106 (184)
Q Consensus 27 ~~sY~~nS~~Q~~~i~~~~p~l~~ai~~~~~~~~~~~~~~~~~~IADlGCS~G~NSl~~v~~iI~~i~~~~~~~~~~~~~ 106 (184)
...|.+++..|.+... .++. . +. ....-+|.|+||.+|..+..+...
T Consensus 6 ~~~Y~~~~~~~~~~~~---~ll~----~-~~-------~~~~~~vLDiGcG~G~~~~~la~~------------------ 52 (258)
T PRK01683 6 PSLYLKFEDERTRPAR---DLLA----R-VP-------LENPRYVVDLGCGPGNSTELLVER------------------ 52 (258)
T ss_pred HHHHHHHHHHhhcHHH---HHHh----h-CC-------CcCCCEEEEEcccCCHHHHHHHHH------------------
Confidence 3569888887755432 2221 1 11 133468999999999886644221
Q ss_pred CcceEEEeCCCCCCchHHHhhhCCCCCce-EEeecCCcccccccCCCccceeeeccccccccC
Q 040907 107 SIEFQVLFNDHYDNDFNTLFKSLPHSRKY-FAAGVPGSFHNRLFPKATLHFVHSSYSLHWLSK 168 (184)
Q Consensus 107 ~pe~qv~~nDLP~NDFNtLF~~L~~~~~~-f~~gvpgSFY~rLfP~~Svh~~~Ss~aLHWLS~ 168 (184)
.|.-+|+..|+... .=...+... .++ |.. +.+ ..+.|.++.|+++|..++||+..
T Consensus 53 ~~~~~v~gvD~s~~-~i~~a~~~~--~~~~~~~---~d~-~~~~~~~~fD~v~~~~~l~~~~d 108 (258)
T PRK01683 53 WPAARITGIDSSPA-MLAEARSRL--PDCQFVE---ADI-ASWQPPQALDLIFANASLQWLPD 108 (258)
T ss_pred CCCCEEEEEECCHH-HHHHHHHhC--CCCeEEE---Cch-hccCCCCCccEEEEccChhhCCC
Confidence 12346666776432 111111111 111 222 232 24457789999999999999864
No 5
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=95.93 E-value=0.01 Score=49.71 Aligned_cols=101 Identities=20% Similarity=0.244 Sum_probs=54.9
Q ss_pred hhHHhhHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCCceEEEeeecCCCcccHHHHHHHHHHHHHHhcCCCCCCCCCc
Q 040907 29 SYAKNSTLQRRVVDAAKELIYEAISDKLDLKLLKFDASNTFQIADLGCSIGPNTFIAVQNIIEAVELKLLQPDHQNISSI 108 (184)
Q Consensus 29 sY~~nS~~Q~~~i~~~~p~l~~ai~~~~~~~~~~~~~~~~~~IADlGCS~G~NSl~~v~~iI~~i~~~~~~~~~~~~~~p 108 (184)
.|.+....|+.+....... +. ....-+|.|+||.+|..+..+ .+.
T Consensus 19 ~Y~~~~~~q~~~a~~l~~~--------l~-------~~~~~~vLDiGcG~G~~~~~l--------~~~------------ 63 (251)
T PRK10258 19 HYEQHAELQRQSADALLAM--------LP-------QRKFTHVLDAGCGPGWMSRYW--------RER------------ 63 (251)
T ss_pred hHhHHHHHHHHHHHHHHHh--------cC-------ccCCCeEEEeeCCCCHHHHHH--------HHc------------
Confidence 5777777776654433211 11 122357999999999765433 111
Q ss_pred ceEEEeCCCCCCchHHHhhhCCCCCceEEeecCCcccccccCCCccceeeeccccccccCC
Q 040907 109 EFQVLFNDHYDNDFNTLFKSLPHSRKYFAAGVPGSFHNRLFPKATLHFVHSSYSLHWLSKV 169 (184)
Q Consensus 109 e~qv~~nDLP~NDFNtLF~~L~~~~~~f~~gvpgSFY~rLfP~~Svh~~~Ss~aLHWLS~v 169 (184)
..+|+..|+-..= -...+.... ...|+. +.+-.--||+++.|+++|..++||....
T Consensus 64 ~~~v~~~D~s~~~-l~~a~~~~~-~~~~~~---~d~~~~~~~~~~fD~V~s~~~l~~~~d~ 119 (251)
T PRK10258 64 GSQVTALDLSPPM-LAQARQKDA-ADHYLA---GDIESLPLATATFDLAWSNLAVQWCGNL 119 (251)
T ss_pred CCeEEEEECCHHH-HHHHHhhCC-CCCEEE---cCcccCcCCCCcEEEEEECchhhhcCCH
Confidence 1356666663211 111111100 112322 2333334788899999999999997653
No 6
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=95.49 E-value=0.02 Score=47.10 Aligned_cols=81 Identities=14% Similarity=0.164 Sum_probs=46.3
Q ss_pred ceEEEeeecCCCcccHHHHHHHHHHHHHHhcCCCCCCCCCcceEEEeCCCCCCchHHHhhh-CCC--CCceEEeecCCcc
Q 040907 68 TFQIADLGCSIGPNTFIAVQNIIEAVELKLLQPDHQNISSIEFQVLFNDHYDNDFNTLFKS-LPH--SRKYFAAGVPGSF 144 (184)
Q Consensus 68 ~~~IADlGCS~G~NSl~~v~~iI~~i~~~~~~~~~~~~~~pe~qv~~nDLP~NDFNtLF~~-L~~--~~~~f~~gvpgSF 144 (184)
.-+|.|+||.+|..+..+... + .|..+|+--|+..+ .-...+. +.. ..++ .-+.+.+
T Consensus 46 ~~~vLDiGcG~G~~~~~la~~--------~---------~~~~~v~gvD~s~~-~~~~a~~~~~~~~~~~v--~~~~~d~ 105 (231)
T TIGR02752 46 GTSALDVCCGTADWSIALAEA--------V---------GPEGHVIGLDFSEN-MLSVGRQKVKDAGLHNV--ELVHGNA 105 (231)
T ss_pred CCEEEEeCCCcCHHHHHHHHH--------h---------CCCCEEEEEECCHH-HHHHHHHHHHhcCCCce--EEEEech
Confidence 468999999999976544321 1 12346666676432 2111111 111 1121 1222344
Q ss_pred cccccCCCccceeeeccccccccC
Q 040907 145 HNRLFPKATLHFVHSSYSLHWLSK 168 (184)
Q Consensus 145 Y~rLfP~~Svh~~~Ss~aLHWLS~ 168 (184)
..--+|+++.|++++.+++||++.
T Consensus 106 ~~~~~~~~~fD~V~~~~~l~~~~~ 129 (231)
T TIGR02752 106 MELPFDDNSFDYVTIGFGLRNVPD 129 (231)
T ss_pred hcCCCCCCCccEEEEecccccCCC
Confidence 443468899999999999999764
No 7
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=95.46 E-value=0.027 Score=47.41 Aligned_cols=100 Identities=18% Similarity=0.197 Sum_probs=57.9
Q ss_pred chhHHhhHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCCceEEEeeecCCCcccHHHHHHHHHHHHHHhcCCCCCCCCC
Q 040907 28 HSYAKNSTLQRRVVDAAKELIYEAISDKLDLKLLKFDASNTFQIADLGCSIGPNTFIAVQNIIEAVELKLLQPDHQNISS 107 (184)
Q Consensus 28 ~sY~~nS~~Q~~~i~~~~p~l~~ai~~~~~~~~~~~~~~~~~~IADlGCS~G~NSl~~v~~iI~~i~~~~~~~~~~~~~~ 107 (184)
.-|.+++..|.+.+.. +++ . +. ....-+|.|+||.+|..+..+ .++.
T Consensus 5 ~~y~~~~~~~~~~~~~---ll~----~-l~-------~~~~~~vLDlGcG~G~~~~~l--------~~~~---------- 51 (255)
T PRK14103 5 DVYLAFADHRGRPFYD---LLA----R-VG-------AERARRVVDLGCGPGNLTRYL--------ARRW---------- 51 (255)
T ss_pred HHHHHHHhHhhCHHHH---HHH----h-CC-------CCCCCEEEEEcCCCCHHHHHH--------HHHC----------
Confidence 4688999888765432 121 1 21 133478999999999665433 2221
Q ss_pred cceEEEeCCCCCCchHHHhhhCCCCCceEEeecCCcccccccCCCccceeeeccccccccC
Q 040907 108 IEFQVLFNDHYDNDFNTLFKSLPHSRKYFAAGVPGSFHNRLFPKATLHFVHSSYSLHWLSK 168 (184)
Q Consensus 108 pe~qv~~nDLP~NDFNtLF~~L~~~~~~f~~gvpgSFY~rLfP~~Svh~~~Ss~aLHWLS~ 168 (184)
|..+|+--|+- -+.-...+.- .--|. -+.+ ..+.|.++.|+++|..+|||+..
T Consensus 52 p~~~v~gvD~s-~~~~~~a~~~---~~~~~---~~d~-~~~~~~~~fD~v~~~~~l~~~~d 104 (255)
T PRK14103 52 PGAVIEALDSS-PEMVAAARER---GVDAR---TGDV-RDWKPKPDTDVVVSNAALQWVPE 104 (255)
T ss_pred CCCEEEEEECC-HHHHHHHHhc---CCcEE---EcCh-hhCCCCCCceEEEEehhhhhCCC
Confidence 23456666653 2222222221 11122 2343 35667889999999999999864
No 8
>PRK06202 hypothetical protein; Provisional
Probab=95.45 E-value=0.055 Score=44.84 Aligned_cols=85 Identities=16% Similarity=0.223 Sum_probs=48.5
Q ss_pred CCceEEEeeecCCCcccHHHHHHHHHHHHHHhcCCCCCCCCCcceEEEeCCCCCCchHHHhhhCCCCCce-EEeecCCcc
Q 040907 66 SNTFQIADLGCSIGPNTFIAVQNIIEAVELKLLQPDHQNISSIEFQVLFNDHYDNDFNTLFKSLPHSRKY-FAAGVPGSF 144 (184)
Q Consensus 66 ~~~~~IADlGCS~G~NSl~~v~~iI~~i~~~~~~~~~~~~~~pe~qv~~nDLP~NDFNtLF~~L~~~~~~-f~~gvpgSF 144 (184)
.+..+|.|+||.+|..+..+... .++. .+..+|+--|+-. +.-...+......++ +..+....+
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~----~~~~----------g~~~~v~gvD~s~-~~l~~a~~~~~~~~~~~~~~~~~~l 123 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARW----ARRD----------GLRLEVTAIDPDP-RAVAFARANPRRPGVTFRQAVSDEL 123 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHH----HHhC----------CCCcEEEEEcCCH-HHHHHHHhccccCCCeEEEEecccc
Confidence 45679999999999877654322 2211 2246777777743 222233332211111 222221221
Q ss_pred cccccCCCccceeeeccccccccC
Q 040907 145 HNRLFPKATLHFVHSSYSLHWLSK 168 (184)
Q Consensus 145 Y~rLfP~~Svh~~~Ss~aLHWLS~ 168 (184)
-+++++.|+++++.+|||+..
T Consensus 124 ---~~~~~~fD~V~~~~~lhh~~d 144 (232)
T PRK06202 124 ---VAEGERFDVVTSNHFLHHLDD 144 (232)
T ss_pred ---cccCCCccEEEECCeeecCCh
Confidence 136789999999999999864
No 9
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=95.18 E-value=0.014 Score=50.88 Aligned_cols=75 Identities=23% Similarity=0.421 Sum_probs=47.7
Q ss_pred eEEEeeecCCCcccHHHHHHHHHHH---------HHHhcCCCCCCCCCcceEEEeCCCCCCchHHHhhhCCCCCceEEee
Q 040907 69 FQIADLGCSIGPNTFIAVQNIIEAV---------ELKLLQPDHQNISSIEFQVLFNDHYDNDFNTLFKSLPHSRKYFAAG 139 (184)
Q Consensus 69 ~~IADlGCS~G~NSl~~v~~iI~~i---------~~~~~~~~~~~~~~pe~qv~~nDLP~NDFNtLF~~L~~~~~~f~~g 139 (184)
-.++|+|||-|.-+-.++.+-|+.+ -+.|+. ++.|++.+ .||+.-
T Consensus 74 p~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~-----~qdp~i~~---------------------~~~v~D 127 (325)
T KOG2940|consen 74 PTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRD-----AQDPSIET---------------------SYFVGD 127 (325)
T ss_pred cceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhc-----cCCCceEE---------------------EEEecc
Confidence 4689999999987766655544432 111111 11233221 234332
Q ss_pred cCCcccccccCCCccceeeeccccccccCCCccc
Q 040907 140 VPGSFHNRLFPKATLHFVHSSYSLHWLSKVPKEL 173 (184)
Q Consensus 140 vpgSFY~rLfP~~Svh~~~Ss~aLHWLS~vP~~l 173 (184)
--|-. |-++|+|+++||.++||...+|...
T Consensus 128 --EE~Ld--f~ens~DLiisSlslHW~NdLPg~m 157 (325)
T KOG2940|consen 128 --EEFLD--FKENSVDLIISSLSLHWTNDLPGSM 157 (325)
T ss_pred --hhccc--ccccchhhhhhhhhhhhhccCchHH
Confidence 24555 8899999999999999999998653
No 10
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=95.04 E-value=0.084 Score=40.76 Aligned_cols=82 Identities=17% Similarity=0.186 Sum_probs=45.3
Q ss_pred CceEEEeeecCCCcccHHHHHHHHHHHHHHhcCCCCCCCCCcceEEEeCCCCCC---chHHHhhhCCCCCceEEeecCCc
Q 040907 67 NTFQIADLGCSIGPNTFIAVQNIIEAVELKLLQPDHQNISSIEFQVLFNDHYDN---DFNTLFKSLPHSRKYFAAGVPGS 143 (184)
Q Consensus 67 ~~~~IADlGCS~G~NSl~~v~~iI~~i~~~~~~~~~~~~~~pe~qv~~nDLP~N---DFNtLF~~L~~~~~~f~~gvpgS 143 (184)
+..+|.|+||.+|..++.+.. +. .|..+++.-|+-.. --+..++.+...+--|.. +.
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~-------~~----------~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~---~d 62 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAK-------EL----------NPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQ---GD 62 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHH-------HS----------TTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEE---SB
T ss_pred CCCEEEEecCcCcHHHHHHHH-------hc----------CCCCEEEEEECcHHHHHHhhcccccccccccceEE---ee
Confidence 457999999999999877653 11 12345555555331 122333333322111222 23
Q ss_pred ccc--cccCCCccceeeeccccccccCC
Q 040907 144 FHN--RLFPKATLHFVHSSYSLHWLSKV 169 (184)
Q Consensus 144 FY~--rLfP~~Svh~~~Ss~aLHWLS~v 169 (184)
+-+ +.++ +..|++++..++||+...
T Consensus 63 ~~~l~~~~~-~~~D~I~~~~~l~~~~~~ 89 (152)
T PF13847_consen 63 IEDLPQELE-EKFDIIISNGVLHHFPDP 89 (152)
T ss_dssp TTCGCGCSS-TTEEEEEEESTGGGTSHH
T ss_pred hhccccccC-CCeeEEEEcCchhhccCH
Confidence 222 2244 789999999999987643
No 11
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=94.73 E-value=0.11 Score=43.04 Aligned_cols=76 Identities=17% Similarity=0.138 Sum_probs=42.2
Q ss_pred ceEEEeeecCCCcccHHHHHHHHHHHHHHhcCCCCCCCCCcceEEEeCCCCCCchHHHhhhCCCCCceEEeecCCccccc
Q 040907 68 TFQIADLGCSIGPNTFIAVQNIIEAVELKLLQPDHQNISSIEFQVLFNDHYDNDFNTLFKSLPHSRKYFAAGVPGSFHNR 147 (184)
Q Consensus 68 ~~~IADlGCS~G~NSl~~v~~iI~~i~~~~~~~~~~~~~~pe~qv~~nDLP~NDFNtLF~~L~~~~~~f~~gvpgSFY~r 147 (184)
.-+|.|+||.+|..+..+... .|..+++--|+-..=....=+.++. ..+. .++...
T Consensus 44 ~~~VLDiGCG~G~~~~~L~~~------------------~~~~~v~giDiS~~~l~~A~~~~~~-~~~~----~~d~~~- 99 (204)
T TIGR03587 44 IASILELGANIGMNLAALKRL------------------LPFKHIYGVEINEYAVEKAKAYLPN-INII----QGSLFD- 99 (204)
T ss_pred CCcEEEEecCCCHHHHHHHHh------------------CCCCeEEEEECCHHHHHHHHhhCCC-CcEE----EeeccC-
Confidence 457999999999876655321 0123344444422211111111221 1122 234444
Q ss_pred ccCCCccceeeecccccccc
Q 040907 148 LFPKATLHFVHSSYSLHWLS 167 (184)
Q Consensus 148 LfP~~Svh~~~Ss~aLHWLS 167 (184)
-||+++.|++++..+||+++
T Consensus 100 ~~~~~sfD~V~~~~vL~hl~ 119 (204)
T TIGR03587 100 PFKDNFFDLVLTKGVLIHIN 119 (204)
T ss_pred CCCCCCEEEEEECChhhhCC
Confidence 67899999999999998774
No 12
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=94.64 E-value=0.052 Score=37.26 Aligned_cols=73 Identities=22% Similarity=0.208 Sum_probs=40.2
Q ss_pred EeeecCCCcccHHHHHHHHHHHHHHhcCCCCCCCCCcceEEEeCCCCCCchHHHhhhCCCCCceEEeecCCcccccccCC
Q 040907 72 ADLGCSIGPNTFIAVQNIIEAVELKLLQPDHQNISSIEFQVLFNDHYDNDFNTLFKSLPHSRKYFAAGVPGSFHNRLFPK 151 (184)
Q Consensus 72 ADlGCS~G~NSl~~v~~iI~~i~~~~~~~~~~~~~~pe~qv~~nDLP~NDFNtLF~~L~~~~~~f~~gvpgSFY~rLfP~ 151 (184)
.|+||..|..+..+.+. +...|+-.|.-..=-...-+.+. ....- -+-+++..--||+
T Consensus 1 LdiG~G~G~~~~~l~~~-------------------~~~~v~~~D~~~~~~~~~~~~~~-~~~~~--~~~~d~~~l~~~~ 58 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR-------------------GGASVTGIDISEEMLEQARKRLK-NEGVS--FRQGDAEDLPFPD 58 (95)
T ss_dssp EEET-TTSHHHHHHHHT-------------------TTCEEEEEES-HHHHHHHHHHTT-TSTEE--EEESBTTSSSS-T
T ss_pred CEecCcCCHHHHHHHhc-------------------cCCEEEEEeCCHHHHHHHHhccc-ccCch--heeehHHhCcccc
Confidence 48999999987666443 11344444443221111111121 11111 3334667778999
Q ss_pred Cccceeeeccccccc
Q 040907 152 ATLHFVHSSYSLHWL 166 (184)
Q Consensus 152 ~Svh~~~Ss~aLHWL 166 (184)
+|+|++++..++||+
T Consensus 59 ~sfD~v~~~~~~~~~ 73 (95)
T PF08241_consen 59 NSFDVVFSNSVLHHL 73 (95)
T ss_dssp T-EEEEEEESHGGGS
T ss_pred ccccccccccceeec
Confidence 999999999999998
No 13
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=93.77 E-value=0.029 Score=42.57 Aligned_cols=71 Identities=18% Similarity=0.263 Sum_probs=43.5
Q ss_pred CCceEEEeeecCCCcccHHHHHHHHHHHHHHhcCCCCCCCCCcceEEEeCCCCCCchHHHhhhCCCCCceEEeecCCccc
Q 040907 66 SNTFQIADLGCSIGPNTFIAVQNIIEAVELKLLQPDHQNISSIEFQVLFNDHYDNDFNTLFKSLPHSRKYFAAGVPGSFH 145 (184)
Q Consensus 66 ~~~~~IADlGCS~G~NSl~~v~~iI~~i~~~~~~~~~~~~~~pe~qv~~nDLP~NDFNtLF~~L~~~~~~f~~gvpgSFY 145 (184)
...-+|.|+||..|.++..+ ++. + +++...|.-...-.. ...++..|.
T Consensus 21 ~~~~~vLDiGcG~G~~~~~l--------~~~----~--------~~~~g~D~~~~~~~~------------~~~~~~~~~ 68 (161)
T PF13489_consen 21 KPGKRVLDIGCGTGSFLRAL--------AKR----G--------FEVTGVDISPQMIEK------------RNVVFDNFD 68 (161)
T ss_dssp TTTSEEEEESSTTSHHHHHH--------HHT----T--------SEEEEEESSHHHHHH------------TTSEEEEEE
T ss_pred CCCCEEEEEcCCCCHHHHHH--------HHh----C--------CEEEEEECCHHHHhh------------hhhhhhhhh
Confidence 45679999999999763333 211 1 356666653322222 111112221
Q ss_pred --ccccCCCccceeeeccccccccC
Q 040907 146 --NRLFPKATLHFVHSSYSLHWLSK 168 (184)
Q Consensus 146 --~rLfP~~Svh~~~Ss~aLHWLS~ 168 (184)
...+|+++.|+++++.+|||+..
T Consensus 69 ~~~~~~~~~~fD~i~~~~~l~~~~d 93 (161)
T PF13489_consen 69 AQDPPFPDGSFDLIICNDVLEHLPD 93 (161)
T ss_dssp CHTHHCHSSSEEEEEEESSGGGSSH
T ss_pred hhhhhccccchhhHhhHHHHhhccc
Confidence 44468899999999999999875
No 14
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=93.71 E-value=0.16 Score=41.49 Aligned_cols=19 Identities=32% Similarity=0.530 Sum_probs=16.2
Q ss_pred ceEEEeeecCCCcccHHHH
Q 040907 68 TFQIADLGCSIGPNTFIAV 86 (184)
Q Consensus 68 ~~~IADlGCS~G~NSl~~v 86 (184)
.-+|.|+||..|.+++.+.
T Consensus 31 ~~~vLDiGcG~G~~a~~La 49 (197)
T PRK11207 31 PGKTLDLGCGNGRNSLYLA 49 (197)
T ss_pred CCcEEEECCCCCHHHHHHH
Confidence 3689999999999987764
No 15
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=93.53 E-value=0.13 Score=41.81 Aligned_cols=85 Identities=18% Similarity=0.189 Sum_probs=49.5
Q ss_pred ceEEEeeecCCCcccHHHHHHHHHHHHHHhcCCCCCCCCCcceEEEeCCCCCCchHHHhhhCCC---CCceEEeecCCcc
Q 040907 68 TFQIADLGCSIGPNTFIAVQNIIEAVELKLLQPDHQNISSIEFQVLFNDHYDNDFNTLFKSLPH---SRKYFAAGVPGSF 144 (184)
Q Consensus 68 ~~~IADlGCS~G~NSl~~v~~iI~~i~~~~~~~~~~~~~~pe~qv~~nDLP~NDFNtLF~~L~~---~~~~f~~gvpgSF 144 (184)
..+|+|+||..|..+..+.... ++..+++..|+..+=....=+.+.. ..++- -+-+++
T Consensus 52 ~~~vldiG~G~G~~~~~l~~~~-----------------~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~--~~~~d~ 112 (239)
T PRK00216 52 GDKVLDLACGTGDLAIALAKAV-----------------GKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVE--FVQGDA 112 (239)
T ss_pred CCeEEEeCCCCCHHHHHHHHHc-----------------CCCCeEEEEeCCHHHHHHHHHhhcccccccCeE--EEeccc
Confidence 4789999999998766553321 1135666667644322211111111 11221 122355
Q ss_pred cccccCCCccceeeeccccccccCCCc
Q 040907 145 HNRLFPKATLHFVHSSYSLHWLSKVPK 171 (184)
Q Consensus 145 Y~rLfP~~Svh~~~Ss~aLHWLS~vP~ 171 (184)
....++..+.|++++++.+|++...+.
T Consensus 113 ~~~~~~~~~~D~I~~~~~l~~~~~~~~ 139 (239)
T PRK00216 113 EALPFPDNSFDAVTIAFGLRNVPDIDK 139 (239)
T ss_pred ccCCCCCCCccEEEEecccccCCCHHH
Confidence 555577789999999999999877543
No 16
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=93.37 E-value=0.65 Score=37.77 Aligned_cols=20 Identities=25% Similarity=0.561 Sum_probs=16.7
Q ss_pred CceEEEeeecCCCcccHHHH
Q 040907 67 NTFQIADLGCSIGPNTFIAV 86 (184)
Q Consensus 67 ~~~~IADlGCS~G~NSl~~v 86 (184)
...+|.|+||.+|..+..+.
T Consensus 63 ~~~~vLDvGcG~G~~~~~l~ 82 (230)
T PRK07580 63 TGLRILDAGCGVGSLSIPLA 82 (230)
T ss_pred CCCEEEEEeCCCCHHHHHHH
Confidence 34689999999999887765
No 17
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=92.54 E-value=0.22 Score=42.92 Aligned_cols=18 Identities=33% Similarity=0.637 Sum_probs=16.0
Q ss_pred EEEeeecCCCcccHHHHH
Q 040907 70 QIADLGCSIGPNTFIAVQ 87 (184)
Q Consensus 70 ~IADlGCS~G~NSl~~v~ 87 (184)
+|.|+||.+|.|++.+..
T Consensus 123 ~vLDlGcG~G~~~~~la~ 140 (287)
T PRK12335 123 KALDLGCGQGRNSLYLAL 140 (287)
T ss_pred CEEEeCCCCCHHHHHHHH
Confidence 899999999999988754
No 18
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=92.49 E-value=0.24 Score=35.59 Aligned_cols=45 Identities=18% Similarity=0.292 Sum_probs=34.3
Q ss_pred eEEEeeecCCCcccHHHHH--------------HHHHHHHHHhcCCCCCCCCCcceEEEeCCC
Q 040907 69 FQIADLGCSIGPNTFIAVQ--------------NIIEAVELKLLQPDHQNISSIEFQVLFNDH 117 (184)
Q Consensus 69 ~~IADlGCS~G~NSl~~v~--------------~iI~~i~~~~~~~~~~~~~~pe~qv~~nDL 117 (184)
-+|.|+||.+|..++.+.. ..++..+++..... ..+.++++..|+
T Consensus 3 ~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~----~~~~i~~~~~d~ 61 (112)
T PF12847_consen 3 GRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEG----LSDRITFVQGDA 61 (112)
T ss_dssp CEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTT----TTTTEEEEESCC
T ss_pred CEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcC----CCCCeEEEECcc
Confidence 4789999999999999998 67888887763221 244688888777
No 19
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=92.46 E-value=0.28 Score=42.11 Aligned_cols=92 Identities=16% Similarity=0.323 Sum_probs=49.3
Q ss_pred CCceEEEeeecCCCcccHHHHHHHHHHHHHHhcCCCCCCCCCcceEEEeCCCCCCchHHH---------hhhCCCC--Cc
Q 040907 66 SNTFQIADLGCSIGPNTFIAVQNIIEAVELKLLQPDHQNISSIEFQVLFNDHYDNDFNTL---------FKSLPHS--RK 134 (184)
Q Consensus 66 ~~~~~IADlGCS~G~NSl~~v~~iI~~i~~~~~~~~~~~~~~pe~qv~~nDLP~NDFNtL---------F~~L~~~--~~ 134 (184)
..+++|.|.||++|--+..+.-.+.+.... . ..+.++|+-.|+-..==... ++.+|.. .+
T Consensus 98 ~~~~ri~d~GCgtGee~YslA~~l~e~~~~-----~----~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~ 168 (264)
T smart00138 98 GRRVRIWSAGCSTGEEPYSLAMLLAETLPK-----A----REPDVKILATDIDLKALEKARAGIYPERELEDLPKALLAR 168 (264)
T ss_pred CCCEEEEeccccCChHHHHHHHHHHHHhhh-----c----CCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhh
Confidence 456999999999997543332222222211 0 12357888777744211100 1222211 13
Q ss_pred eEEeecCC-----------------cccccccCCCccceeeecccccccc
Q 040907 135 YFAAGVPG-----------------SFHNRLFPKATLHFVHSSYSLHWLS 167 (184)
Q Consensus 135 ~f~~gvpg-----------------SFY~rLfP~~Svh~~~Ss~aLHWLS 167 (184)
||.- .+| ..-+.-+|.++.|+++|...|||++
T Consensus 169 yf~~-~~~~~~v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~ 217 (264)
T smart00138 169 YFSR-VEDKYRVKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFD 217 (264)
T ss_pred hEEe-CCCeEEEChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCC
Confidence 4432 122 1122234688999999999999986
No 20
>PRK05785 hypothetical protein; Provisional
Probab=91.93 E-value=0.15 Score=42.77 Aligned_cols=77 Identities=18% Similarity=0.227 Sum_probs=44.9
Q ss_pred ceEEEeeecCCCcccHHHHHHHHHHHHHHhcCCCCCCCCCcceEEEeCCCCCCchHHHhhhCCCCCceEEeecCCccccc
Q 040907 68 TFQIADLGCSIGPNTFIAVQNIIEAVELKLLQPDHQNISSIEFQVLFNDHYDNDFNTLFKSLPHSRKYFAAGVPGSFHNR 147 (184)
Q Consensus 68 ~~~IADlGCS~G~NSl~~v~~iI~~i~~~~~~~~~~~~~~pe~qv~~nDLP~NDFNtLF~~L~~~~~~f~~gvpgSFY~r 147 (184)
.-+|.|+||.+|..+..+.... ..+|+--|+ +-+.=.+.+.- .-++ -+++-.-
T Consensus 52 ~~~VLDlGcGtG~~~~~l~~~~-------------------~~~v~gvD~-S~~Ml~~a~~~----~~~~---~~d~~~l 104 (226)
T PRK05785 52 PKKVLDVAAGKGELSYHFKKVF-------------------KYYVVALDY-AENMLKMNLVA----DDKV---VGSFEAL 104 (226)
T ss_pred CCeEEEEcCCCCHHHHHHHHhc-------------------CCEEEEECC-CHHHHHHHHhc----cceE---EechhhC
Confidence 4689999999998876543221 023444443 11111111110 1122 2344444
Q ss_pred ccCCCccceeeeccccccccCCCc
Q 040907 148 LFPKATLHFVHSSYSLHWLSKVPK 171 (184)
Q Consensus 148 LfP~~Svh~~~Ss~aLHWLS~vP~ 171 (184)
=||++|.|.++++++|||+...+.
T Consensus 105 p~~d~sfD~v~~~~~l~~~~d~~~ 128 (226)
T PRK05785 105 PFRDKSFDVVMSSFALHASDNIEK 128 (226)
T ss_pred CCCCCCEEEEEecChhhccCCHHH
Confidence 478999999999999999876443
No 21
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=91.39 E-value=0.35 Score=40.06 Aligned_cols=72 Identities=17% Similarity=0.199 Sum_probs=42.5
Q ss_pred ceEEEeeecCCCcccHHHHHHHHHHHHHHhcCCCCCCCCCcceEEEeCCCCCCchHHHhhhCCCCCceEEeecCCccccc
Q 040907 68 TFQIADLGCSIGPNTFIAVQNIIEAVELKLLQPDHQNISSIEFQVLFNDHYDNDFNTLFKSLPHSRKYFAAGVPGSFHNR 147 (184)
Q Consensus 68 ~~~IADlGCS~G~NSl~~v~~iI~~i~~~~~~~~~~~~~~pe~qv~~nDLP~NDFNtLF~~L~~~~~~f~~gvpgSFY~r 147 (184)
.-+|+|+||++|.-+..+... . .+.-+|+--|+-. . ..++ .+ -.+=|++.+.
T Consensus 52 ~~~VLDlG~GtG~~t~~l~~~--------~---------~~~~~V~aVDi~~--~----~~~~---~v--~~i~~D~~~~ 103 (209)
T PRK11188 52 GMTVVDLGAAPGGWSQYAVTQ--------I---------GDKGRVIACDILP--M----DPIV---GV--DFLQGDFRDE 103 (209)
T ss_pred CCEEEEEcccCCHHHHHHHHH--------c---------CCCceEEEEeccc--c----cCCC---Cc--EEEecCCCCh
Confidence 358999999999866554321 1 1123455555532 1 1112 22 1223355542
Q ss_pred --------ccCCCccceeeecccccccc
Q 040907 148 --------LFPKATLHFVHSSYSLHWLS 167 (184)
Q Consensus 148 --------LfP~~Svh~~~Ss~aLHWLS 167 (184)
-++..++|+++|..+.||.-
T Consensus 104 ~~~~~i~~~~~~~~~D~V~S~~~~~~~g 131 (209)
T PRK11188 104 LVLKALLERVGDSKVQVVMSDMAPNMSG 131 (209)
T ss_pred HHHHHHHHHhCCCCCCEEecCCCCccCC
Confidence 26788999999999999953
No 22
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=91.36 E-value=0.25 Score=41.09 Aligned_cols=79 Identities=18% Similarity=0.251 Sum_probs=43.0
Q ss_pred ceEEEeeecCCCcccHHHHHHHHHHHHHHhcCCCCCCCCCcceEEEeCCCCCCchHHHhhh-CCC---CCceEEeecCCc
Q 040907 68 TFQIADLGCSIGPNTFIAVQNIIEAVELKLLQPDHQNISSIEFQVLFNDHYDNDFNTLFKS-LPH---SRKYFAAGVPGS 143 (184)
Q Consensus 68 ~~~IADlGCS~G~NSl~~v~~iI~~i~~~~~~~~~~~~~~pe~qv~~nDLP~NDFNtLF~~-L~~---~~~~f~~gvpgS 143 (184)
.-+|.|+||.+|..+..+...+ ..|..+|+--|+-. +.=...+. +.. ..++ --+-+.
T Consensus 54 ~~~iLDlGcG~G~~~~~l~~~~----------------~~p~~~v~gvD~s~-~ml~~a~~~~~~~~~~~~v--~~~~~d 114 (239)
T TIGR00740 54 DSNVYDLGCSRGAATLSARRNI----------------NQPNVKIIGIDNSQ-PMVERCRQHIAAYHSEIPV--EILCND 114 (239)
T ss_pred CCEEEEecCCCCHHHHHHHHhc----------------CCCCCeEEEEeCCH-HHHHHHHHHHHhcCCCCCe--EEEECC
Confidence 3589999999998766553321 02345666666532 22112211 111 1122 223345
Q ss_pred ccccccCCCccceeeecccccccc
Q 040907 144 FHNRLFPKATLHFVHSSYSLHWLS 167 (184)
Q Consensus 144 FY~rLfP~~Svh~~~Ss~aLHWLS 167 (184)
+..--+| ..|++++.++|||+.
T Consensus 115 ~~~~~~~--~~d~v~~~~~l~~~~ 136 (239)
T TIGR00740 115 IRHVEIK--NASMVILNFTLQFLP 136 (239)
T ss_pred hhhCCCC--CCCEEeeecchhhCC
Confidence 5443334 467899999999985
No 23
>PRK06922 hypothetical protein; Provisional
Probab=90.95 E-value=0.37 Score=47.16 Aligned_cols=23 Identities=30% Similarity=0.280 Sum_probs=18.9
Q ss_pred ccCCCccceeeeccccccc-cCCC
Q 040907 148 LFPKATLHFVHSSYSLHWL-SKVP 170 (184)
Q Consensus 148 LfP~~Svh~~~Ss~aLHWL-S~vP 170 (184)
.||++++|++++++++||+ +.+|
T Consensus 482 ~fedeSFDvVVsn~vLH~L~syIp 505 (677)
T PRK06922 482 SFEKESVDTIVYSSILHELFSYIE 505 (677)
T ss_pred ccCCCCEEEEEEchHHHhhhhhcc
Confidence 4788999999999999965 4455
No 24
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=90.49 E-value=1.4 Score=37.12 Aligned_cols=19 Identities=42% Similarity=0.712 Sum_probs=15.3
Q ss_pred CceEEEeeecCCCcccHHH
Q 040907 67 NTFQIADLGCSIGPNTFIA 85 (184)
Q Consensus 67 ~~~~IADlGCS~G~NSl~~ 85 (184)
..-+|.|+||.+|.+++.+
T Consensus 56 ~~~~vLDlGcGtG~~~~~l 74 (247)
T PRK15451 56 PGTQVYDLGCSLGAATLSV 74 (247)
T ss_pred CCCEEEEEcccCCHHHHHH
Confidence 3468999999999987654
No 25
>PLN02244 tocopherol O-methyltransferase
Probab=90.48 E-value=2 Score=38.17 Aligned_cols=21 Identities=29% Similarity=0.566 Sum_probs=16.9
Q ss_pred CceEEEeeecCCCcccHHHHH
Q 040907 67 NTFQIADLGCSIGPNTFIAVQ 87 (184)
Q Consensus 67 ~~~~IADlGCS~G~NSl~~v~ 87 (184)
..-+|.|+||..|..+..+..
T Consensus 118 ~~~~VLDiGCG~G~~~~~La~ 138 (340)
T PLN02244 118 RPKRIVDVGCGIGGSSRYLAR 138 (340)
T ss_pred CCCeEEEecCCCCHHHHHHHH
Confidence 446899999999998876654
No 26
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=90.30 E-value=0.3 Score=41.96 Aligned_cols=89 Identities=18% Similarity=0.212 Sum_probs=55.7
Q ss_pred CceEEEeeecCCCcccHHHHHHHHHHHHHHhcCCCCCCCCCcceEEEeCCCCCCchHHHhhhCCCCCceEEeecCCcccc
Q 040907 67 NTFQIADLGCSIGPNTFIAVQNIIEAVELKLLQPDHQNISSIEFQVLFNDHYDNDFNTLFKSLPHSRKYFAAGVPGSFHN 146 (184)
Q Consensus 67 ~~~~IADlGCS~G~NSl~~v~~iI~~i~~~~~~~~~~~~~~pe~qv~~nDLP~NDFNtLF~~L~~~~~~f~~gvpgSFY~ 146 (184)
...+|.|+||.+|--++.+...+ ++-+|..-|...+=.+.-=+-+.......+.=|=|..-.
T Consensus 51 ~g~~vLDva~GTGd~a~~~~k~~------------------g~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~ 112 (238)
T COG2226 51 PGDKVLDVACGTGDMALLLAKSV------------------GTGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAEN 112 (238)
T ss_pred CCCEEEEecCCccHHHHHHHHhc------------------CCceEEEEECCHHHHHHHHHHhhccCccceEEEEechhh
Confidence 56899999999998877664332 124555555544333332222222111112222235555
Q ss_pred cccCCCccceeeeccccccccCCCccc
Q 040907 147 RLFPKATLHFVHSSYSLHWLSKVPKEL 173 (184)
Q Consensus 147 rLfP~~Svh~~~Ss~aLHWLS~vP~~l 173 (184)
=-||++|.|++..+|.||++...+..|
T Consensus 113 LPf~D~sFD~vt~~fglrnv~d~~~aL 139 (238)
T COG2226 113 LPFPDNSFDAVTISFGLRNVTDIDKAL 139 (238)
T ss_pred CCCCCCccCEEEeeehhhcCCCHHHHH
Confidence 559999999999999999999887765
No 27
>PRK08317 hypothetical protein; Provisional
Probab=90.28 E-value=1.3 Score=35.46 Aligned_cols=82 Identities=18% Similarity=0.225 Sum_probs=43.9
Q ss_pred CceEEEeeecCCCcccHHHHHHHHHHHHHHhcCCCCCCCCCcceEEEeCCCCCCchHHHhhhCCC-CCce-EEeecCCcc
Q 040907 67 NTFQIADLGCSIGPNTFIAVQNIIEAVELKLLQPDHQNISSIEFQVLFNDHYDNDFNTLFKSLPH-SRKY-FAAGVPGSF 144 (184)
Q Consensus 67 ~~~~IADlGCS~G~NSl~~v~~iI~~i~~~~~~~~~~~~~~pe~qv~~nDLP~NDFNtLF~~L~~-~~~~-f~~gvpgSF 144 (184)
..-+|.|+||..|..+..+.... .|.-+++--|+...-....-+.... ...+ |.. +.+
T Consensus 19 ~~~~vLdiG~G~G~~~~~~a~~~-----------------~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~---~d~ 78 (241)
T PRK08317 19 PGDRVLDVGCGPGNDARELARRV-----------------GPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVR---GDA 78 (241)
T ss_pred CCCEEEEeCCCCCHHHHHHHHhc-----------------CCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEe---ccc
Confidence 35689999999997665543322 0123455555533322211111000 0111 221 223
Q ss_pred cccccCCCccceeeeccccccccC
Q 040907 145 HNRLFPKATLHFVHSSYSLHWLSK 168 (184)
Q Consensus 145 Y~rLfP~~Svh~~~Ss~aLHWLS~ 168 (184)
...-++..+.|++++..++||+..
T Consensus 79 ~~~~~~~~~~D~v~~~~~~~~~~~ 102 (241)
T PRK08317 79 DGLPFPDGSFDAVRSDRVLQHLED 102 (241)
T ss_pred ccCCCCCCCceEEEEechhhccCC
Confidence 333367788999999999998865
No 28
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=89.98 E-value=4 Score=33.29 Aligned_cols=20 Identities=20% Similarity=0.355 Sum_probs=16.5
Q ss_pred CceEEEeeecCCCcccHHHH
Q 040907 67 NTFQIADLGCSIGPNTFIAV 86 (184)
Q Consensus 67 ~~~~IADlGCS~G~NSl~~v 86 (184)
..-+|.|+||.+|..+..+.
T Consensus 55 ~~~~vLDiGcG~G~~~~~la 74 (219)
T TIGR02021 55 KGKRVLDAGCGTGLLSIELA 74 (219)
T ss_pred CCCEEEEEeCCCCHHHHHHH
Confidence 45799999999999877664
No 29
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=89.89 E-value=0.84 Score=36.52 Aligned_cols=83 Identities=11% Similarity=0.073 Sum_probs=47.1
Q ss_pred CceEEEeeecCCCcccHHHHHHHHHHHHHHhcCCCCCCCCCcceEEEeCCCCCCchHHHhhhCCCCCceEEeecCCcccc
Q 040907 67 NTFQIADLGCSIGPNTFIAVQNIIEAVELKLLQPDHQNISSIEFQVLFNDHYDNDFNTLFKSLPHSRKYFAAGVPGSFHN 146 (184)
Q Consensus 67 ~~~~IADlGCS~G~NSl~~v~~iI~~i~~~~~~~~~~~~~~pe~qv~~nDLP~NDFNtLF~~L~~~~~~f~~gvpgSFY~ 146 (184)
...+|.|+||..|..+..+.... +...+++.-|+...-....=+.+....++-+ +-+.+.+
T Consensus 39 ~~~~vldiG~G~G~~~~~~~~~~-----------------~~~~~~~~iD~~~~~~~~~~~~~~~~~~i~~--~~~d~~~ 99 (223)
T TIGR01934 39 KGQKVLDVACGTGDLAIELAKSA-----------------PDRGKVTGVDFSSEMLEVAKKKSELPLNIEF--IQADAEA 99 (223)
T ss_pred CCCeEEEeCCCCChhHHHHHHhc-----------------CCCceEEEEECCHHHHHHHHHHhccCCCceE--Eecchhc
Confidence 45799999999998766553221 1114566666532211111111111112211 1245555
Q ss_pred cccCCCccceeeeccccccccC
Q 040907 147 RLFPKATLHFVHSSYSLHWLSK 168 (184)
Q Consensus 147 rLfP~~Svh~~~Ss~aLHWLS~ 168 (184)
..++.++.|++++++.+|+...
T Consensus 100 ~~~~~~~~D~i~~~~~~~~~~~ 121 (223)
T TIGR01934 100 LPFEDNSFDAVTIAFGLRNVTD 121 (223)
T ss_pred CCCCCCcEEEEEEeeeeCCccc
Confidence 5577889999999999998765
No 30
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=89.54 E-value=0.34 Score=39.74 Aligned_cols=109 Identities=13% Similarity=0.154 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhccCCCCCceEEEeeecCCCcccHHHHHHHHHHHHHHhcCCCCCCCCCcceEEEeC
Q 040907 36 LQRRVVDAAKELIYEAISDKLDLKLLKFDASNTFQIADLGCSIGPNTFIAVQNIIEAVELKLLQPDHQNISSIEFQVLFN 115 (184)
Q Consensus 36 ~Q~~~i~~~~p~l~~ai~~~~~~~~~~~~~~~~~~IADlGCS~G~NSl~~v~~iI~~i~~~~~~~~~~~~~~pe~qv~~n 115 (184)
+|+.+.....|.+-....+...+ + ....-+|.|+||.+|..++.+.... |..+|+-.
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~----~-~~~~~~VLDiGcGtG~~~~~la~~~------------------p~~~v~gV 70 (202)
T PRK00121 14 GQQRAIEELWPRLSPAPLDWAEL----F-GNDAPIHLEIGFGKGEFLVEMAKAN------------------PDINFIGI 70 (202)
T ss_pred chhhhhcccchhhcCCCCCHHHH----c-CCCCCeEEEEccCCCHHHHHHHHHC------------------CCccEEEE
Confidence 56666666666664333332221 1 1245789999999999877663321 12234444
Q ss_pred CCCCCchHHHhhhCCC--CCce-EEeecCCcccccccCCCccceeeecccccccc
Q 040907 116 DHYDNDFNTLFKSLPH--SRKY-FAAGVPGSFHNRLFPKATLHFVHSSYSLHWLS 167 (184)
Q Consensus 116 DLP~NDFNtLF~~L~~--~~~~-f~~gvpgSFY~rLfP~~Svh~~~Ss~aLHWLS 167 (184)
|.-..=-..+-+.+.. ..++ |..+=.-..+.+.+|+.++|.+++.++.+|..
T Consensus 71 D~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~~~~p~~~ 125 (202)
T PRK00121 71 EVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLNFPDPWPK 125 (202)
T ss_pred EechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEEECCCCCCC
Confidence 4432211111111110 0122 11111001133457788889888888877754
No 31
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=89.30 E-value=0.91 Score=38.81 Aligned_cols=79 Identities=19% Similarity=0.193 Sum_probs=45.8
Q ss_pred CceEEEeeecCCCcccHHHHHHHHHHHHHHhcCCCCCCCCCcceEEEeCCCCCCchHHHhhh-CCCCCceEEeecCCccc
Q 040907 67 NTFQIADLGCSIGPNTFIAVQNIIEAVELKLLQPDHQNISSIEFQVLFNDHYDNDFNTLFKS-LPHSRKYFAAGVPGSFH 145 (184)
Q Consensus 67 ~~~~IADlGCS~G~NSl~~v~~iI~~i~~~~~~~~~~~~~~pe~qv~~nDLP~NDFNtLF~~-L~~~~~~f~~gvpgSFY 145 (184)
..-+|.|+||..|..+..+.. .. ..+|+--|+..+--. ..+. ...... +.-+.+++.
T Consensus 52 ~~~~VLDiGcG~G~~a~~la~--------~~-----------~~~v~giD~s~~~~~-~a~~~~~~~~~--i~~~~~D~~ 109 (263)
T PTZ00098 52 ENSKVLDIGSGLGGGCKYINE--------KY-----------GAHVHGVDICEKMVN-IAKLRNSDKNK--IEFEANDIL 109 (263)
T ss_pred CCCEEEEEcCCCChhhHHHHh--------hc-----------CCEEEEEECCHHHHH-HHHHHcCcCCc--eEEEECCcc
Confidence 346899999999997655421 11 135666666432211 1121 111112 222334655
Q ss_pred ccccCCCccceeeecccccccc
Q 040907 146 NRLFPKATLHFVHSSYSLHWLS 167 (184)
Q Consensus 146 ~rLfP~~Svh~~~Ss~aLHWLS 167 (184)
..-||+++.|++++..++|+++
T Consensus 110 ~~~~~~~~FD~V~s~~~l~h~~ 131 (263)
T PTZ00098 110 KKDFPENTFDMIYSRDAILHLS 131 (263)
T ss_pred cCCCCCCCeEEEEEhhhHHhCC
Confidence 5568899999999988876654
No 32
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=88.32 E-value=0.57 Score=33.18 Aligned_cols=78 Identities=15% Similarity=0.097 Sum_probs=32.8
Q ss_pred EeeecCCCcccHHHHHHHHHHHHHHhcCCCCCCCCCcceEEEeCCCCCCchHHHhhhCCC---CCceEEeecCCcccccc
Q 040907 72 ADLGCSIGPNTFIAVQNIIEAVELKLLQPDHQNISSIEFQVLFNDHYDNDFNTLFKSLPH---SRKYFAAGVPGSFHNRL 148 (184)
Q Consensus 72 ADlGCS~G~NSl~~v~~iI~~i~~~~~~~~~~~~~~pe~qv~~nDLP~NDFNtLF~~L~~---~~~~f~~gvpgSFY~rL 148 (184)
.|+||.+|..+..++... |..+++..|....=....=+.+.. ...-.............
T Consensus 1 LdiGcG~G~~~~~l~~~~------------------~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 62 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEEL------------------PDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYD 62 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-------------------EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CC
T ss_pred CEeCccChHHHHHHHHhC------------------CCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcc
Confidence 389999999987764432 246666777644322110001110 01112222222222222
Q ss_pred cCCCccceeeeccccccccC
Q 040907 149 FPKATLHFVHSSYSLHWLSK 168 (184)
Q Consensus 149 fP~~Svh~~~Ss~aLHWLS~ 168 (184)
+.++.|+++++..|||+..
T Consensus 63 -~~~~fD~V~~~~vl~~l~~ 81 (99)
T PF08242_consen 63 -PPESFDLVVASNVLHHLED 81 (99)
T ss_dssp -C----SEEEEE-TTS--S-
T ss_pred -cccccceehhhhhHhhhhh
Confidence 2279999999999999933
No 33
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=87.99 E-value=0.92 Score=41.60 Aligned_cols=81 Identities=15% Similarity=0.231 Sum_probs=46.3
Q ss_pred ceEEEeeecCCCcccHHHHHHHHHHHHHHhcCCCCCCCCCcceEEEeCCCCCCchHHHhhhCCCCCceEEeecCCccccc
Q 040907 68 TFQIADLGCSIGPNTFIAVQNIIEAVELKLLQPDHQNISSIEFQVLFNDHYDNDFNTLFKSLPHSRKYFAAGVPGSFHNR 147 (184)
Q Consensus 68 ~~~IADlGCS~G~NSl~~v~~iI~~i~~~~~~~~~~~~~~pe~qv~~nDLP~NDFNtLF~~L~~~~~~f~~gvpgSFY~r 147 (184)
.-+|.|+||.+|..++.+. +.. ..+|+--|+.. +.=...+.-......-+.-+-+.+...
T Consensus 267 ~~~vLDiGcG~G~~~~~la--------~~~-----------~~~v~gvDiS~-~~l~~A~~~~~~~~~~v~~~~~d~~~~ 326 (475)
T PLN02336 267 GQKVLDVGCGIGGGDFYMA--------ENF-----------DVHVVGIDLSV-NMISFALERAIGRKCSVEFEVADCTKK 326 (475)
T ss_pred CCEEEEEeccCCHHHHHHH--------Hhc-----------CCEEEEEECCH-HHHHHHHHHhhcCCCceEEEEcCcccC
Confidence 4689999999997654432 111 13566666632 221222111001010111222456666
Q ss_pred ccCCCccceeeeccccccccC
Q 040907 148 LFPKATLHFVHSSYSLHWLSK 168 (184)
Q Consensus 148 LfP~~Svh~~~Ss~aLHWLS~ 168 (184)
.+|+++.|+++|..+++|+..
T Consensus 327 ~~~~~~fD~I~s~~~l~h~~d 347 (475)
T PLN02336 327 TYPDNSFDVIYSRDTILHIQD 347 (475)
T ss_pred CCCCCCEEEEEECCcccccCC
Confidence 788999999999999999854
No 34
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=87.76 E-value=1.2 Score=40.05 Aligned_cols=81 Identities=16% Similarity=0.177 Sum_probs=45.4
Q ss_pred CceEEEeeecCCCcccHHHHHHHHHHHHHHhcCCCCCCCCCcceEEEeCCCCCCchHHHhhhCCCCCceEEeecCCcccc
Q 040907 67 NTFQIADLGCSIGPNTFIAVQNIIEAVELKLLQPDHQNISSIEFQVLFNDHYDNDFNTLFKSLPHSRKYFAAGVPGSFHN 146 (184)
Q Consensus 67 ~~~~IADlGCS~G~NSl~~v~~iI~~i~~~~~~~~~~~~~~pe~qv~~nDLP~NDFNtLF~~L~~~~~~f~~gvpgSFY~ 146 (184)
...+|.|+||.+|..++.+.... +..+|+.-|+..+--. ..+......++ .-+.|+...
T Consensus 113 ~~~~VLDLGcGtG~~~l~La~~~------------------~~~~VtgVD~S~~mL~-~A~~k~~~~~i--~~i~gD~e~ 171 (340)
T PLN02490 113 RNLKVVDVGGGTGFTTLGIVKHV------------------DAKNVTILDQSPHQLA-KAKQKEPLKEC--KIIEGDAED 171 (340)
T ss_pred CCCEEEEEecCCcHHHHHHHHHC------------------CCCEEEEEECCHHHHH-HHHHhhhccCC--eEEeccHHh
Confidence 34799999999998766543211 1235556665332222 22221111111 113344444
Q ss_pred cccCCCccceeeeccccccccC
Q 040907 147 RLFPKATLHFVHSSYSLHWLSK 168 (184)
Q Consensus 147 rLfP~~Svh~~~Ss~aLHWLS~ 168 (184)
--||+++.|++++..++|++..
T Consensus 172 lp~~~~sFDvVIs~~~L~~~~d 193 (340)
T PLN02490 172 LPFPTDYADRYVSAGSIEYWPD 193 (340)
T ss_pred CCCCCCceeEEEEcChhhhCCC
Confidence 4467888999999999987553
No 35
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=87.35 E-value=1.3 Score=36.10 Aligned_cols=17 Identities=24% Similarity=0.626 Sum_probs=13.7
Q ss_pred EEEeeecCCCcccHHHH
Q 040907 70 QIADLGCSIGPNTFIAV 86 (184)
Q Consensus 70 ~IADlGCS~G~NSl~~v 86 (184)
+|.|+||..|..+..+.
T Consensus 2 ~vLDiGcG~G~~~~~la 18 (224)
T smart00828 2 RVLDFGCGYGSDLIDLA 18 (224)
T ss_pred eEEEECCCCCHHHHHHH
Confidence 58999999998766553
No 36
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=87.19 E-value=0.67 Score=39.19 Aligned_cols=27 Identities=7% Similarity=0.155 Sum_probs=19.6
Q ss_pred CcccccccCCCccceeeeccccccccC
Q 040907 142 GSFHNRLFPKATLHFVHSSYSLHWLSK 168 (184)
Q Consensus 142 gSFY~rLfP~~Svh~~~Ss~aLHWLS~ 168 (184)
|.+-.--+|++++|++++...+||.-.
T Consensus 135 ~d~~~l~~~~~~fD~Vi~~~v~~~~~d 161 (272)
T PRK11873 135 GEIEALPVADNSVDVIISNCVINLSPD 161 (272)
T ss_pred cchhhCCCCCCceeEEEEcCcccCCCC
Confidence 344332367889999999999998644
No 37
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=87.19 E-value=0.45 Score=38.33 Aligned_cols=20 Identities=25% Similarity=0.429 Sum_probs=17.9
Q ss_pred cCCCccceeeeccccccccC
Q 040907 149 FPKATLHFVHSSYSLHWLSK 168 (184)
Q Consensus 149 fP~~Svh~~~Ss~aLHWLS~ 168 (184)
+|+++.|++++..+|||+..
T Consensus 71 ~~~~sfD~Vi~~~~l~~~~d 90 (194)
T TIGR02081 71 FPDKSFDYVILSQTLQATRN 90 (194)
T ss_pred cCCCCcCEEEEhhHhHcCcC
Confidence 67899999999999999865
No 38
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=87.16 E-value=0.65 Score=40.19 Aligned_cols=25 Identities=20% Similarity=0.485 Sum_probs=20.1
Q ss_pred ccccCCCccceeeeccccccccCCC
Q 040907 146 NRLFPKATLHFVHSSYSLHWLSKVP 170 (184)
Q Consensus 146 ~rLfP~~Svh~~~Ss~aLHWLS~vP 170 (184)
...-|+...|++++.-+||||..=|
T Consensus 85 ~~w~p~~~~dllfaNAvlqWlpdH~ 109 (257)
T COG4106 85 RTWKPEQPTDLLFANAVLQWLPDHP 109 (257)
T ss_pred hhcCCCCccchhhhhhhhhhccccH
Confidence 4566889999999999999976533
No 39
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=87.00 E-value=1.2 Score=38.06 Aligned_cols=20 Identities=15% Similarity=0.298 Sum_probs=17.9
Q ss_pred cCCCccceeeeccccccccC
Q 040907 149 FPKATLHFVHSSYSLHWLSK 168 (184)
Q Consensus 149 fP~~Svh~~~Ss~aLHWLS~ 168 (184)
||++|.|++++++++||+..
T Consensus 141 ~~~~sfD~V~~~~~l~~~~d 160 (261)
T PLN02233 141 FDDCYFDAITMGYGLRNVVD 160 (261)
T ss_pred CCCCCEeEEEEecccccCCC
Confidence 78899999999999999754
No 40
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=85.07 E-value=1.1 Score=41.04 Aligned_cols=20 Identities=20% Similarity=0.496 Sum_probs=17.9
Q ss_pred cCCCccceeeeccccccccC
Q 040907 149 FPKATLHFVHSSYSLHWLSK 168 (184)
Q Consensus 149 fP~~Svh~~~Ss~aLHWLS~ 168 (184)
+|+++.|++++.+++||+..
T Consensus 99 ~~~~~fD~I~~~~~l~~l~~ 118 (475)
T PLN02336 99 ISDGSVDLIFSNWLLMYLSD 118 (475)
T ss_pred CCCCCEEEEehhhhHHhCCH
Confidence 68899999999999999864
No 41
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=83.93 E-value=1.9 Score=39.63 Aligned_cols=19 Identities=11% Similarity=0.265 Sum_probs=15.5
Q ss_pred eEEEeeecCCCcccHHHHH
Q 040907 69 FQIADLGCSIGPNTFIAVQ 87 (184)
Q Consensus 69 ~~IADlGCS~G~NSl~~v~ 87 (184)
-.+.|+||.+|..++.+..
T Consensus 124 p~vLEIGcGsG~~ll~lA~ 142 (390)
T PRK14121 124 KILIEIGFGSGRHLLYQAK 142 (390)
T ss_pred CeEEEEcCcccHHHHHHHH
Confidence 4799999999988776654
No 42
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=83.70 E-value=1.7 Score=35.19 Aligned_cols=19 Identities=16% Similarity=0.221 Sum_probs=15.5
Q ss_pred eEEEeeecCCCcccHHHHH
Q 040907 69 FQIADLGCSIGPNTFIAVQ 87 (184)
Q Consensus 69 ~~IADlGCS~G~NSl~~v~ 87 (184)
-+|+|+||.+|.-++.+..
T Consensus 18 ~~ilDiGcG~G~~~~~la~ 36 (194)
T TIGR00091 18 PLHLEIGCGKGRFLIDMAK 36 (194)
T ss_pred ceEEEeCCCccHHHHHHHH
Confidence 4899999999988776543
No 43
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=82.75 E-value=0.33 Score=41.16 Aligned_cols=84 Identities=17% Similarity=0.235 Sum_probs=40.0
Q ss_pred CceEEEeeecCCCcccHHHHHHHHHHHHHHhcCCCCCCCCCcceEEEeCCCCCCchHHHhhh-CCC--CCce-EEeecCC
Q 040907 67 NTFQIADLGCSIGPNTFIAVQNIIEAVELKLLQPDHQNISSIEFQVLFNDHYDNDFNTLFKS-LPH--SRKY-FAAGVPG 142 (184)
Q Consensus 67 ~~~~IADlGCS~G~NSl~~v~~iI~~i~~~~~~~~~~~~~~pe~qv~~nDLP~NDFNtLF~~-L~~--~~~~-f~~gvpg 142 (184)
...+|.|+||.+|-.|+.+.. +. .|..+|+--|+.. +--.+.+. +.. ..++ |+.+
T Consensus 47 ~g~~vLDv~~GtG~~~~~l~~--------~~---------~~~~~v~~vD~s~-~ML~~a~~k~~~~~~~~i~~v~~--- 105 (233)
T PF01209_consen 47 PGDRVLDVACGTGDVTRELAR--------RV---------GPNGKVVGVDISP-GMLEVARKKLKREGLQNIEFVQG--- 105 (233)
T ss_dssp S--EEEEET-TTSHHHHHHGG--------GS---------S---EEEEEES-H-HHHHHHHHHHHHTT--SEEEEE----
T ss_pred CCCEEEEeCCChHHHHHHHHH--------HC---------CCccEEEEecCCH-HHHHHHHHHHHhhCCCCeeEEEc---
Confidence 356999999999987665421 11 2335666666522 11112211 111 1133 4443
Q ss_pred cccccccCCCccceeeeccccccccCCCc
Q 040907 143 SFHNRLFPKATLHFVHSSYSLHWLSKVPK 171 (184)
Q Consensus 143 SFY~rLfP~~Svh~~~Ss~aLHWLS~vP~ 171 (184)
..-.==||++|.|.+.++++||-+...+.
T Consensus 106 da~~lp~~d~sfD~v~~~fglrn~~d~~~ 134 (233)
T PF01209_consen 106 DAEDLPFPDNSFDAVTCSFGLRNFPDRER 134 (233)
T ss_dssp BTTB--S-TT-EEEEEEES-GGG-SSHHH
T ss_pred CHHHhcCCCCceeEEEHHhhHHhhCCHHH
Confidence 43333489999999999999998765443
No 44
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=81.43 E-value=2.3 Score=28.17 Aligned_cols=76 Identities=17% Similarity=0.137 Sum_probs=38.8
Q ss_pred EEEeeecCCCcccHHHHHHHHHHHHHHhcCCCCCCCCCcceEEEeCCCCCCchHHHhhh--CCCCCceEEeecCCccccc
Q 040907 70 QIADLGCSIGPNTFIAVQNIIEAVELKLLQPDHQNISSIEFQVLFNDHYDNDFNTLFKS--LPHSRKYFAAGVPGSFHNR 147 (184)
Q Consensus 70 ~IADlGCS~G~NSl~~v~~iI~~i~~~~~~~~~~~~~~pe~qv~~nDLP~NDFNtLF~~--L~~~~~~f~~gvpgSFY~r 147 (184)
+|+|+||..|..+..+.. .+...++.-|+..+-....-+. ......+-+. -+.+.+.
T Consensus 1 ~ildig~G~G~~~~~~~~-------------------~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 59 (107)
T cd02440 1 RVLDLGCGTGALALALAS-------------------GPGARVTGVDISPVALELARKAAAALLADNVEVL--KGDAEEL 59 (107)
T ss_pred CeEEEcCCccHHHHHHhc-------------------CCCCEEEEEeCCHHHHHHHHHHHhcccccceEEE--EcChhhh
Confidence 489999999987655532 0124455556544332222211 0011111111 1222222
Q ss_pred c-cCCCccceeeeccccccc
Q 040907 148 L-FPKATLHFVHSSYSLHWL 166 (184)
Q Consensus 148 L-fP~~Svh~~~Ss~aLHWL 166 (184)
. .+....|+++....+++.
T Consensus 60 ~~~~~~~~d~i~~~~~~~~~ 79 (107)
T cd02440 60 PPEADESFDVIISDPPLHHL 79 (107)
T ss_pred ccccCCceEEEEEccceeeh
Confidence 2 356778999998888874
No 45
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=81.00 E-value=8.7 Score=31.18 Aligned_cols=19 Identities=11% Similarity=0.204 Sum_probs=15.8
Q ss_pred CceEEEeeecCCCcccHHH
Q 040907 67 NTFQIADLGCSIGPNTFIA 85 (184)
Q Consensus 67 ~~~~IADlGCS~G~NSl~~ 85 (184)
..-+|.|+||.+|..|..+
T Consensus 78 ~~~~VLeiG~GsG~~t~~l 96 (212)
T PRK00312 78 PGDRVLEIGTGSGYQAAVL 96 (212)
T ss_pred CCCEEEEECCCccHHHHHH
Confidence 3579999999999988743
No 46
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=80.88 E-value=4.9 Score=33.28 Aligned_cols=71 Identities=17% Similarity=0.165 Sum_probs=46.2
Q ss_pred CCceEEEeeecCCCcccHHHHHHHHHHHHHHhcCCCCCCCCCcceEEEeCCCCCCchHHHhhhCCCCCceEEeecCCccc
Q 040907 66 SNTFQIADLGCSIGPNTFIAVQNIIEAVELKLLQPDHQNISSIEFQVLFNDHYDNDFNTLFKSLPHSRKYFAAGVPGSFH 145 (184)
Q Consensus 66 ~~~~~IADlGCS~G~NSl~~v~~iI~~i~~~~~~~~~~~~~~pe~qv~~nDLP~NDFNtLF~~L~~~~~~f~~gvpgSFY 145 (184)
+..-+|+|+|+.+|..+..+ + ++ -|.+++..=|||.- ........++ .-+||.|+
T Consensus 99 ~~~~~vvDvGGG~G~~~~~l-------~-~~----------~P~l~~~v~Dlp~v-----~~~~~~~~rv--~~~~gd~f 153 (241)
T PF00891_consen 99 SGFKTVVDVGGGSGHFAIAL-------A-RA----------YPNLRATVFDLPEV-----IEQAKEADRV--EFVPGDFF 153 (241)
T ss_dssp TTSSEEEEET-TTSHHHHHH-------H-HH----------STTSEEEEEE-HHH-----HCCHHHTTTE--EEEES-TT
T ss_pred cCccEEEeccCcchHHHHHH-------H-HH----------CCCCcceeeccHhh-----hhcccccccc--ccccccHH
Confidence 33457999999999775444 2 22 35688888999863 1111112233 34889999
Q ss_pred ccccCCCccceeeeccccc
Q 040907 146 NRLFPKATLHFVHSSYSLH 164 (184)
Q Consensus 146 ~rLfP~~Svh~~~Ss~aLH 164 (184)
.=+|. -|+++-...||
T Consensus 154 -~~~P~--~D~~~l~~vLh 169 (241)
T PF00891_consen 154 -DPLPV--ADVYLLRHVLH 169 (241)
T ss_dssp -TCCSS--ESEEEEESSGG
T ss_pred -hhhcc--ccceeeehhhh
Confidence 77888 89999999998
No 47
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=80.20 E-value=5.8 Score=34.23 Aligned_cols=76 Identities=14% Similarity=0.137 Sum_probs=45.7
Q ss_pred CCceEEEeeecCCCcccHHHHHHHHHHHHHHhcCCCCCCCCCcceEEEeCCCCCCchHHHhh-hCCC---CCceEEeecC
Q 040907 66 SNTFQIADLGCSIGPNTFIAVQNIIEAVELKLLQPDHQNISSIEFQVLFNDHYDNDFNTLFK-SLPH---SRKYFAAGVP 141 (184)
Q Consensus 66 ~~~~~IADlGCS~G~NSl~~v~~iI~~i~~~~~~~~~~~~~~pe~qv~~nDLP~NDFNtLF~-~L~~---~~~~f~~gvp 141 (184)
...-+|.|+||.+|.-++.+.. + -|+.+++.-|+|. --.+.+ .+.. ..+ +..++
T Consensus 148 ~~~~~vlDiG~G~G~~~~~~~~--------~----------~p~~~~~~~D~~~--~~~~a~~~~~~~gl~~r--v~~~~ 205 (306)
T TIGR02716 148 DGVKKMIDVGGGIGDISAAMLK--------H----------FPELDSTILNLPG--AIDLVNENAAEKGVADR--MRGIA 205 (306)
T ss_pred CCCCEEEEeCCchhHHHHHHHH--------H----------CCCCEEEEEecHH--HHHHHHHHHHhCCccce--EEEEe
Confidence 3346999999999976544422 1 2346676668862 222221 1111 112 34577
Q ss_pred CcccccccCCCccceeeecccccc
Q 040907 142 GSFHNRLFPKATLHFVHSSYSLHW 165 (184)
Q Consensus 142 gSFY~rLfP~~Svh~~~Ss~aLHW 165 (184)
|+|++.-+|.. |+++.+..||-
T Consensus 206 ~d~~~~~~~~~--D~v~~~~~lh~ 227 (306)
T TIGR02716 206 VDIYKESYPEA--DAVLFCRILYS 227 (306)
T ss_pred cCccCCCCCCC--CEEEeEhhhhc
Confidence 89987667763 88888888883
No 48
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=79.41 E-value=1.5 Score=38.74 Aligned_cols=77 Identities=17% Similarity=0.173 Sum_probs=42.1
Q ss_pred eEEEeeecCCCcccHHHHHHHHHHHHHHhcCCCCCCCCCcceEEEeCCCCCCchHHHhhhC----CCCCceEEeecCCcc
Q 040907 69 FQIADLGCSIGPNTFIAVQNIIEAVELKLLQPDHQNISSIEFQVLFNDHYDNDFNTLFKSL----PHSRKYFAAGVPGSF 144 (184)
Q Consensus 69 ~~IADlGCS~G~NSl~~v~~iI~~i~~~~~~~~~~~~~~pe~qv~~nDLP~NDFNtLF~~L----~~~~~~f~~gvpgSF 144 (184)
-+|+|+||.+|..++.+... + +. +|+--| |+-.+-.-|+.. ....++-+ +++.+
T Consensus 124 ~~VLDIGCG~G~~~~~la~~------------g------~~-~V~GiD-~S~~~l~q~~a~~~~~~~~~~i~~--~~~d~ 181 (322)
T PRK15068 124 RTVLDVGCGNGYHMWRMLGA------------G------AK-LVVGID-PSQLFLCQFEAVRKLLGNDQRAHL--LPLGI 181 (322)
T ss_pred CEEEEeccCCcHHHHHHHHc------------C------CC-EEEEEc-CCHHHHHHHHHHHHhcCCCCCeEE--EeCCH
Confidence 48999999999887644211 1 11 366666 444443333222 11122321 22333
Q ss_pred cccccCCCccceeeeccccccccC
Q 040907 145 HNRLFPKATLHFVHSSYSLHWLSK 168 (184)
Q Consensus 145 Y~rLfP~~Svh~~~Ss~aLHWLS~ 168 (184)
- .+=.+++.|+++|..+|||+..
T Consensus 182 e-~lp~~~~FD~V~s~~vl~H~~d 204 (322)
T PRK15068 182 E-QLPALKAFDTVFSMGVLYHRRS 204 (322)
T ss_pred H-HCCCcCCcCEEEECChhhccCC
Confidence 2 2211677899999999988643
No 49
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=78.49 E-value=1.9 Score=37.69 Aligned_cols=17 Identities=12% Similarity=0.661 Sum_probs=15.8
Q ss_pred CCCccceeeeccccccc
Q 040907 150 PKATLHFVHSSYSLHWL 166 (184)
Q Consensus 150 P~~Svh~~~Ss~aLHWL 166 (184)
+++|||++.+.-|+||.
T Consensus 97 ~e~SVDlI~~Aqa~HWF 113 (261)
T KOG3010|consen 97 GEESVDLITAAQAVHWF 113 (261)
T ss_pred CCcceeeehhhhhHHhh
Confidence 38999999999999995
No 50
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=78.45 E-value=1.2 Score=37.07 Aligned_cols=46 Identities=20% Similarity=0.260 Sum_probs=28.1
Q ss_pred ceEEEeeecCCCcccHHHHH------------HHHHHHHHHhcCCCCCCCCCcceEEEeCCCCC
Q 040907 68 TFQIADLGCSIGPNTFIAVQ------------NIIEAVELKLLQPDHQNISSIEFQVLFNDHYD 119 (184)
Q Consensus 68 ~~~IADlGCS~G~NSl~~v~------------~iI~~i~~~~~~~~~~~~~~pe~qv~~nDLP~ 119 (184)
+-++.|+||..|+||+-+.+ ..|+.+.+.....+ . +|++..-||-.
T Consensus 31 ~g~~LDlgcG~GRNalyLA~~G~~VtAvD~s~~al~~l~~~a~~~~-----l-~i~~~~~Dl~~ 88 (192)
T PF03848_consen 31 PGKALDLGCGEGRNALYLASQGFDVTAVDISPVALEKLQRLAEEEG-----L-DIRTRVADLND 88 (192)
T ss_dssp SSEEEEES-TTSHHHHHHHHTT-EEEEEESSHHHHHHHHHHHHHTT-------TEEEEE-BGCC
T ss_pred CCcEEEcCCCCcHHHHHHHHCCCeEEEEECCHHHHHHHHHHHhhcC-----c-eeEEEEecchh
Confidence 46899999999999998764 24555554432222 2 36666677643
No 51
>PTZ00146 fibrillarin; Provisional
Probab=77.22 E-value=3.8 Score=36.37 Aligned_cols=20 Identities=15% Similarity=0.126 Sum_probs=16.3
Q ss_pred eEEEeeecCCCcccHHHHHH
Q 040907 69 FQIADLGCSIGPNTFIAVQN 88 (184)
Q Consensus 69 ~~IADlGCS~G~NSl~~v~~ 88 (184)
-+|+||||++|..|..+.+.
T Consensus 134 ~~VLDLGaG~G~~t~~lAdi 153 (293)
T PTZ00146 134 SKVLYLGAASGTTVSHVSDL 153 (293)
T ss_pred CEEEEeCCcCCHHHHHHHHH
Confidence 58999999999987666543
No 52
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=76.61 E-value=3.5 Score=35.90 Aligned_cols=23 Identities=13% Similarity=0.303 Sum_probs=19.0
Q ss_pred CceEEEeeecCCCcccHHHHHHH
Q 040907 67 NTFQIADLGCSIGPNTFIAVQNI 89 (184)
Q Consensus 67 ~~~~IADlGCS~G~NSl~~v~~i 89 (184)
...+|.|+||.+|.-|..++...
T Consensus 63 ~~~~iLELGcGtG~~t~~Ll~~l 85 (301)
T TIGR03438 63 AGCELVELGSGSSRKTRLLLDAL 85 (301)
T ss_pred CCCeEEecCCCcchhHHHHHHhh
Confidence 34689999999999998887664
No 53
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=75.89 E-value=6.2 Score=33.55 Aligned_cols=20 Identities=25% Similarity=0.444 Sum_probs=15.7
Q ss_pred ceEEEeeecCCCcccHHHHH
Q 040907 68 TFQIADLGCSIGPNTFIAVQ 87 (184)
Q Consensus 68 ~~~IADlGCS~G~NSl~~v~ 87 (184)
.-+|.|+||.+|..+..+..
T Consensus 86 ~~~vLDiGcG~G~~~~~l~~ 105 (272)
T PRK11088 86 ATALLDIGCGEGYYTHALAD 105 (272)
T ss_pred CCeEEEECCcCCHHHHHHHH
Confidence 46799999999987766543
No 54
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=73.40 E-value=10 Score=31.62 Aligned_cols=62 Identities=19% Similarity=0.248 Sum_probs=43.0
Q ss_pred eEEEeeecCCCcccHHHH--------------HHHHHHHHHHhcCCCCCCCCCcceEEEeCCCCCCchHHHhhhCCCCCc
Q 040907 69 FQIADLGCSIGPNTFIAV--------------QNIIEAVELKLLQPDHQNISSIEFQVLFNDHYDNDFNTLFKSLPHSRK 134 (184)
Q Consensus 69 ~~IADlGCS~G~NSl~~v--------------~~iI~~i~~~~~~~~~~~~~~pe~qv~~nDLP~NDFNtLF~~L~~~~~ 134 (184)
=++.|.||-+|.-|+..+ .+.++.+++.+.+.+ .+.++|.--|=|. .+..++.+..
T Consensus 36 ~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg-----~~n~~vv~g~Ap~-----~L~~~~~~da 105 (187)
T COG2242 36 DRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFG-----VDNLEVVEGDAPE-----ALPDLPSPDA 105 (187)
T ss_pred CEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhC-----CCcEEEEeccchH-----hhcCCCCCCE
Confidence 489999999999999988 346777777776654 4457877777664 2334444455
Q ss_pred eEEeec
Q 040907 135 YFAAGV 140 (184)
Q Consensus 135 ~f~~gv 140 (184)
+|+.|-
T Consensus 106 iFIGGg 111 (187)
T COG2242 106 IFIGGG 111 (187)
T ss_pred EEECCC
Confidence 666554
No 55
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=70.97 E-value=2.2 Score=37.13 Aligned_cols=43 Identities=28% Similarity=0.420 Sum_probs=28.1
Q ss_pred hHHhhHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCCceEEEeeecCCCccc
Q 040907 30 YAKNSTLQRRVVDAAKELIYEAISDKLDLKLLKFDASNTFQIADLGCSIGPNT 82 (184)
Q Consensus 30 Y~~nS~~Q~~~i~~~~p~l~~ai~~~~~~~~~~~~~~~~~~IADlGCS~G~NS 82 (184)
|+.||++|.- . .++.+.|++ .+.+ +.+.+--|.|+||.+|--+
T Consensus 23 Yt~nsri~~I--Q--~em~eRaLE-LLal-----p~~~~~~iLDIGCGsGLSg 65 (270)
T KOG1541|consen 23 YTQNSRIVLI--Q--AEMAERALE-LLAL-----PGPKSGLILDIGCGSGLSG 65 (270)
T ss_pred ccccceeeee--h--HHHHHHHHH-HhhC-----CCCCCcEEEEeccCCCcch
Confidence 8899987632 2 245555553 3433 2456888999999999653
No 56
>PHA03412 putative methyltransferase; Provisional
Probab=69.50 E-value=2.6 Score=36.42 Aligned_cols=80 Identities=21% Similarity=0.278 Sum_probs=48.2
Q ss_pred ceEEEeeecCCCcccHHHHHHH-----------------HHHHHHHhcCCCCCCCCCcceEEEeCCCCCCchHHHhhhCC
Q 040907 68 TFQIADLGCSIGPNTFIAVQNI-----------------IEAVELKLLQPDHQNISSIEFQVLFNDHYDNDFNTLFKSLP 130 (184)
Q Consensus 68 ~~~IADlGCS~G~NSl~~v~~i-----------------I~~i~~~~~~~~~~~~~~pe~qv~~nDLP~NDFNtLF~~L~ 130 (184)
.-+|+|+||-+|.-++.+...+ ++..++ + .+.+.+...|+-..+++.-|..+-
T Consensus 50 ~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~-----n-----~~~~~~~~~D~~~~~~~~~FDlII 119 (241)
T PHA03412 50 SGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKR-----I-----VPEATWINADALTTEFDTLFDMAI 119 (241)
T ss_pred CCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHh-----h-----ccCCEEEEcchhcccccCCccEEE
Confidence 3699999999999888776542 111111 1 234777778876555544444443
Q ss_pred CCCceEE-------------------------eecCCcccccccCCCccceeeec
Q 040907 131 HSRKYFA-------------------------AGVPGSFHNRLFPKATLHFVHSS 160 (184)
Q Consensus 131 ~~~~~f~-------------------------~gvpgSFY~rLfP~~Svh~~~Ss 160 (184)
..++|+. ..-||.| ++|..++.|.+|.
T Consensus 120 sNPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~---ILP~~~~~~~y~~ 171 (241)
T PHA03412 120 SNPPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTF---IIPQMSANFRYSG 171 (241)
T ss_pred ECCCCCCccccccCCcccccHHHHHHHHHHHHHcCCCEE---EeCcccccCcccC
Confidence 2233331 2345665 7788888887764
No 57
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=69.43 E-value=2.8 Score=34.05 Aligned_cols=19 Identities=32% Similarity=0.604 Sum_probs=16.6
Q ss_pred ceEEEeeecCCCcccHHHH
Q 040907 68 TFQIADLGCSIGPNTFIAV 86 (184)
Q Consensus 68 ~~~IADlGCS~G~NSl~~v 86 (184)
+-+|.|+||.+|.+++.+.
T Consensus 31 ~~~vLDiGcG~G~~a~~la 49 (195)
T TIGR00477 31 PCKTLDLGCGQGRNSLYLS 49 (195)
T ss_pred CCcEEEeCCCCCHHHHHHH
Confidence 4689999999999998775
No 58
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=68.39 E-value=15 Score=33.53 Aligned_cols=18 Identities=33% Similarity=0.517 Sum_probs=14.5
Q ss_pred eEEEeeecCCCcccHHHH
Q 040907 69 FQIADLGCSIGPNTFIAV 86 (184)
Q Consensus 69 ~~IADlGCS~G~NSl~~v 86 (184)
-+|.|+||.+|.-++.+.
T Consensus 230 ~~VLDLGCGtGvi~i~la 247 (378)
T PRK15001 230 GEIVDLGCGNGVIGLTLL 247 (378)
T ss_pred CeEEEEeccccHHHHHHH
Confidence 389999999998766553
No 59
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=67.22 E-value=2.9 Score=29.75 Aligned_cols=18 Identities=39% Similarity=0.595 Sum_probs=13.8
Q ss_pred EEeeecCCCcccHHHHHH
Q 040907 71 IADLGCSIGPNTFIAVQN 88 (184)
Q Consensus 71 IADlGCS~G~NSl~~v~~ 88 (184)
|.|+||.+|..+..+...
T Consensus 1 ILDlgcG~G~~~~~l~~~ 18 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARR 18 (101)
T ss_dssp -EEET-TTSHHHHHHHHH
T ss_pred CEEeecCCcHHHHHHHHH
Confidence 789999999998887655
No 60
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=66.77 E-value=9 Score=31.35 Aligned_cols=19 Identities=16% Similarity=0.165 Sum_probs=16.4
Q ss_pred ceEEEeeecCCCcccHHHH
Q 040907 68 TFQIADLGCSIGPNTFIAV 86 (184)
Q Consensus 68 ~~~IADlGCS~G~NSl~~v 86 (184)
.-+|.|+||.+|..++.+.
T Consensus 46 g~~VLDiGcGtG~~al~la 64 (187)
T PRK00107 46 GERVLDVGSGAGFPGIPLA 64 (187)
T ss_pred CCeEEEEcCCCCHHHHHHH
Confidence 5789999999999888765
No 61
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=66.67 E-value=6.8 Score=31.16 Aligned_cols=20 Identities=20% Similarity=0.325 Sum_probs=16.6
Q ss_pred ceEEEeeecCCCcccHHHHH
Q 040907 68 TFQIADLGCSIGPNTFIAVQ 87 (184)
Q Consensus 68 ~~~IADlGCS~G~NSl~~v~ 87 (184)
.-+|.|+||.+|.-++.+..
T Consensus 32 ~~~vLDiG~G~G~~~~~la~ 51 (187)
T PRK08287 32 AKHLIDVGAGTGSVSIEAAL 51 (187)
T ss_pred CCEEEEECCcCCHHHHHHHH
Confidence 45899999999998887654
No 62
>PRK07402 precorrin-6B methylase; Provisional
Probab=65.54 E-value=21 Score=28.65 Aligned_cols=45 Identities=11% Similarity=0.064 Sum_probs=28.5
Q ss_pred eEEEeeecCCCcccHHHHH--------------HHHHHHHHHhcCCCCCCCCCcceEEEeCCCC
Q 040907 69 FQIADLGCSIGPNTFIAVQ--------------NIIEAVELKLLQPDHQNISSIEFQVLFNDHY 118 (184)
Q Consensus 69 ~~IADlGCS~G~NSl~~v~--------------~iI~~i~~~~~~~~~~~~~~pe~qv~~nDLP 118 (184)
-+|.|+||.+|..++.+.. ..++..++++...+ ...++++..|.+
T Consensus 42 ~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~-----~~~v~~~~~d~~ 100 (196)
T PRK07402 42 SVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFG-----VKNVEVIEGSAP 100 (196)
T ss_pred CEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhC-----CCCeEEEECchH
Confidence 5899999999999887642 34455555443222 224677766653
No 63
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=64.66 E-value=4.7 Score=28.92 Aligned_cols=19 Identities=26% Similarity=0.272 Sum_probs=15.8
Q ss_pred eEEEeeecCCCcccHHHHH
Q 040907 69 FQIADLGCSIGPNTFIAVQ 87 (184)
Q Consensus 69 ~~IADlGCS~G~NSl~~v~ 87 (184)
-+|.|+||..|..+..+..
T Consensus 21 ~~vldlG~G~G~~~~~l~~ 39 (124)
T TIGR02469 21 DVLWDIGAGSGSITIEAAR 39 (124)
T ss_pred CEEEEeCCCCCHHHHHHHH
Confidence 4999999999998777643
No 64
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=63.13 E-value=13 Score=29.09 Aligned_cols=20 Identities=15% Similarity=0.120 Sum_probs=17.7
Q ss_pred eEEEeeecCCCcccHHHHHH
Q 040907 69 FQIADLGCSIGPNTFIAVQN 88 (184)
Q Consensus 69 ~~IADlGCS~G~NSl~~v~~ 88 (184)
-+|.|+||..|..|..+.+.
T Consensus 15 ~~vLEiG~G~G~lt~~l~~~ 34 (169)
T smart00650 15 DTVLEIGPGKGALTEELLER 34 (169)
T ss_pred CEEEEECCCccHHHHHHHhc
Confidence 48999999999999988765
No 65
>PRK04266 fibrillarin; Provisional
Probab=62.66 E-value=4.6 Score=34.07 Aligned_cols=21 Identities=14% Similarity=0.105 Sum_probs=17.3
Q ss_pred ceEEEeeecCCCcccHHHHHH
Q 040907 68 TFQIADLGCSIGPNTFIAVQN 88 (184)
Q Consensus 68 ~~~IADlGCS~G~NSl~~v~~ 88 (184)
.-+|+|+||.+|..++.+...
T Consensus 73 g~~VlD~G~G~G~~~~~la~~ 93 (226)
T PRK04266 73 GSKVLYLGAASGTTVSHVSDI 93 (226)
T ss_pred CCEEEEEccCCCHHHHHHHHh
Confidence 368999999999988777553
No 66
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=62.27 E-value=3.7 Score=35.08 Aligned_cols=63 Identities=22% Similarity=0.200 Sum_probs=27.2
Q ss_pred CCCceEEEeeecCCCcccHHHHHHHHHHHHHHhcCCCCCCCCCcceEEEeCCCCCC-chHHHhhhCCCCCceEEeecCCc
Q 040907 65 ASNTFQIADLGCSIGPNTFIAVQNIIEAVELKLLQPDHQNISSIEFQVLFNDHYDN-DFNTLFKSLPHSRKYFAAGVPGS 143 (184)
Q Consensus 65 ~~~~~~IADlGCS~G~NSl~~v~~iI~~i~~~~~~~~~~~~~~pe~qv~~nDLP~N-DFNtLF~~L~~~~~~f~~gvpgS 143 (184)
.+...+|||+||..+.-+ .++.+ .+.|+-=||-.. |+= -.|=++.||
T Consensus 70 ~~~~~viaD~GCGdA~la--------~~~~~-------------~~~V~SfDLva~n~~V---------tacdia~vP-- 117 (219)
T PF05148_consen 70 RPKSLVIADFGCGDAKLA--------KAVPN-------------KHKVHSFDLVAPNPRV---------TACDIANVP-- 117 (219)
T ss_dssp S-TTS-EEEES-TT-HHH--------HH--S----------------EEEEESS-SSTTE---------EES-TTS-S--
T ss_pred cCCCEEEEECCCchHHHH--------Hhccc-------------CceEEEeeccCCCCCE---------EEecCccCc--
Confidence 366799999999987544 22221 244555455332 110 012234555
Q ss_pred ccccccCCCccceeeeccccc
Q 040907 144 FHNRLFPKATLHFVHSSYSLH 164 (184)
Q Consensus 144 FY~rLfP~~Svh~~~Ss~aLH 164 (184)
++++|||+++..-||+
T Consensus 118 -----L~~~svDv~VfcLSLM 133 (219)
T PF05148_consen 118 -----LEDESVDVAVFCLSLM 133 (219)
T ss_dssp -------TT-EEEEEEES---
T ss_pred -----CCCCceeEEEEEhhhh
Confidence 4889999998887775
No 67
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=61.33 E-value=41 Score=28.78 Aligned_cols=48 Identities=10% Similarity=0.187 Sum_probs=32.9
Q ss_pred eEEEeeecCCCcccHHHHH------------HHHHHHHHHhcCCCCCCCCCcceEEEeCCCCCCchHH
Q 040907 69 FQIADLGCSIGPNTFIAVQ------------NIIEAVELKLLQPDHQNISSIEFQVLFNDHYDNDFNT 124 (184)
Q Consensus 69 ~~IADlGCS~G~NSl~~v~------------~iI~~i~~~~~~~~~~~~~~pe~qv~~nDLP~NDFNt 124 (184)
-+|.|+||.+|.-|..+.. ..++.++++.. .+.++++..|...-++..
T Consensus 44 ~~VLEiG~G~G~lt~~L~~~~~~v~avE~d~~~~~~~~~~~~--------~~~v~~i~~D~~~~~~~~ 103 (272)
T PRK00274 44 DNVLEIGPGLGALTEPLLERAAKVTAVEIDRDLAPILAETFA--------EDNLTIIEGDALKVDLSE 103 (272)
T ss_pred CeEEEeCCCccHHHHHHHHhCCcEEEEECCHHHHHHHHHhhc--------cCceEEEEChhhcCCHHH
Confidence 5899999999999988877 34444444331 135777887776655543
No 68
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=61.03 E-value=11 Score=30.88 Aligned_cols=20 Identities=10% Similarity=0.340 Sum_probs=16.7
Q ss_pred ceEEEeeecCCCcccHHHHH
Q 040907 68 TFQIADLGCSIGPNTFIAVQ 87 (184)
Q Consensus 68 ~~~IADlGCS~G~NSl~~v~ 87 (184)
.-+|.|+||.+|..|..+..
T Consensus 78 ~~~VLDiG~GsG~~a~~la~ 97 (215)
T TIGR00080 78 GMKVLEIGTGSGYQAAVLAE 97 (215)
T ss_pred cCEEEEECCCccHHHHHHHH
Confidence 46999999999999976544
No 69
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=60.69 E-value=10 Score=31.85 Aligned_cols=21 Identities=14% Similarity=0.276 Sum_probs=16.5
Q ss_pred CCceEEEeeecCCCcccHHHH
Q 040907 66 SNTFQIADLGCSIGPNTFIAV 86 (184)
Q Consensus 66 ~~~~~IADlGCS~G~NSl~~v 86 (184)
....+|.|+||.+|..++.+.
T Consensus 43 ~~~~~vLDiGcG~G~~a~~la 63 (255)
T PRK11036 43 PRPLRVLDAGGGEGQTAIKLA 63 (255)
T ss_pred CCCCEEEEeCCCchHHHHHHH
Confidence 345799999999998876653
No 70
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=59.86 E-value=11 Score=32.60 Aligned_cols=21 Identities=19% Similarity=0.096 Sum_probs=17.6
Q ss_pred ceEEEeeecCCCcccHHHHHH
Q 040907 68 TFQIADLGCSIGPNTFIAVQN 88 (184)
Q Consensus 68 ~~~IADlGCS~G~NSl~~v~~ 88 (184)
..+|.|+||.+|..++.+...
T Consensus 122 ~~~vLDlG~GsG~i~~~la~~ 142 (284)
T TIGR03533 122 VKRILDLCTGSGCIAIACAYA 142 (284)
T ss_pred CCEEEEEeCchhHHHHHHHHH
Confidence 468999999999988887653
No 71
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=59.54 E-value=5.3 Score=33.94 Aligned_cols=22 Identities=32% Similarity=0.294 Sum_probs=17.6
Q ss_pred CceEEEeeecCCCcccHHHHHH
Q 040907 67 NTFQIADLGCSIGPNTFIAVQN 88 (184)
Q Consensus 67 ~~~~IADlGCS~G~NSl~~v~~ 88 (184)
+.-++.|+||++|.-|..+...
T Consensus 75 ~~~~vlDiG~gtG~~t~~l~~~ 96 (228)
T TIGR00478 75 KNKIVLDVGSSTGGFTDCALQK 96 (228)
T ss_pred CCCEEEEcccCCCHHHHHHHHc
Confidence 3468999999999998876543
No 72
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=58.97 E-value=8.5 Score=30.39 Aligned_cols=20 Identities=25% Similarity=0.426 Sum_probs=15.5
Q ss_pred CCceEEEeeecCCCcccHHH
Q 040907 66 SNTFQIADLGCSIGPNTFIA 85 (184)
Q Consensus 66 ~~~~~IADlGCS~G~NSl~~ 85 (184)
.+..++.|+|||.|.-|-.+
T Consensus 22 ~~~~~vlDlG~aPGGws~~~ 41 (181)
T PF01728_consen 22 GKGFTVLDLGAAPGGWSQVL 41 (181)
T ss_dssp TTTEEEEEET-TTSHHHHHH
T ss_pred ccccEEEEcCCcccceeeee
Confidence 36799999999999976554
No 73
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=56.21 E-value=7.8 Score=31.33 Aligned_cols=18 Identities=17% Similarity=0.209 Sum_probs=15.6
Q ss_pred ceEEEeeecCCCcccHHH
Q 040907 68 TFQIADLGCSIGPNTFIA 85 (184)
Q Consensus 68 ~~~IADlGCS~G~NSl~~ 85 (184)
.-+|.|+||.+|..++.+
T Consensus 43 ~~~vLDiGcGtG~~s~~l 60 (181)
T TIGR00138 43 GKKVIDIGSGAGFPGIPL 60 (181)
T ss_pred CCeEEEecCCCCccHHHH
Confidence 468999999999888776
No 74
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=55.80 E-value=6.1 Score=35.25 Aligned_cols=19 Identities=26% Similarity=0.429 Sum_probs=15.7
Q ss_pred CCCceEEEeeecCCCcccH
Q 040907 65 ASNTFQIADLGCSIGPNTF 83 (184)
Q Consensus 65 ~~~~~~IADlGCS~G~NSl 83 (184)
-+..++|||+||..+.-+.
T Consensus 178 r~~~~vIaD~GCGEakiA~ 196 (325)
T KOG3045|consen 178 RPKNIVIADFGCGEAKIAS 196 (325)
T ss_pred CcCceEEEecccchhhhhh
Confidence 3678999999999987654
No 75
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=54.99 E-value=13 Score=33.44 Aligned_cols=54 Identities=17% Similarity=0.123 Sum_probs=37.6
Q ss_pred eEEEeeecCCCcccHHHHHH--------------HHHHHHHHhcCCCCCCCCCcceEEEeCCCCCCchHHHh
Q 040907 69 FQIADLGCSIGPNTFIAVQN--------------IIEAVELKLLQPDHQNISSIEFQVLFNDHYDNDFNTLF 126 (184)
Q Consensus 69 ~~IADlGCS~G~NSl~~v~~--------------iI~~i~~~~~~~~~~~~~~pe~qv~~nDLP~NDFNtLF 126 (184)
-.|+|+||.+|.-|+.+... +|+...+.++...- .--|.|.++|+.+-=|+..-
T Consensus 150 ~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l----~g~i~v~~~~me~d~~~~~~ 217 (328)
T KOG2904|consen 150 THILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKL----SGRIEVIHNIMESDASDEHP 217 (328)
T ss_pred ceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhh----cCceEEEecccccccccccc
Confidence 37999999999999988653 45555555544321 22599999988777666653
No 76
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=54.95 E-value=51 Score=28.55 Aligned_cols=45 Identities=18% Similarity=0.264 Sum_probs=29.5
Q ss_pred eEEEeeecCCCcccHHHHHH-------------HHHHHHHHhcCCCCCCCCCcceEEEeCCC
Q 040907 69 FQIADLGCSIGPNTFIAVQN-------------IIEAVELKLLQPDHQNISSIEFQVLFNDH 117 (184)
Q Consensus 69 ~~IADlGCS~G~NSl~~v~~-------------iI~~i~~~~~~~~~~~~~~pe~qv~~nDL 117 (184)
-+|.|+||.-|..++.+... -.+.++++....+. ...++|.+-|-
T Consensus 64 ~~vLDiGcGwG~~~~~~a~~~g~~v~gitlS~~Q~~~a~~~~~~~gl----~~~v~v~~~D~ 121 (273)
T PF02353_consen 64 DRVLDIGCGWGGLAIYAAERYGCHVTGITLSEEQAEYARERIREAGL----EDRVEVRLQDY 121 (273)
T ss_dssp -EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHCSTS----SSTEEEEES-G
T ss_pred CEEEEeCCCccHHHHHHHHHcCcEEEEEECCHHHHHHHHHHHHhcCC----CCceEEEEeec
Confidence 69999999999999998877 23445555555432 23477888775
No 77
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=53.91 E-value=17 Score=32.36 Aligned_cols=18 Identities=22% Similarity=0.357 Sum_probs=14.8
Q ss_pred ceEEEeeecCCCcccHHH
Q 040907 68 TFQIADLGCSIGPNTFIA 85 (184)
Q Consensus 68 ~~~IADlGCS~G~NSl~~ 85 (184)
..+|.|+||..|..+..+
T Consensus 132 g~~ILDIGCG~G~~s~~L 149 (322)
T PLN02396 132 GLKFIDIGCGGGLLSEPL 149 (322)
T ss_pred CCEEEEeeCCCCHHHHHH
Confidence 468999999999976644
No 78
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=53.71 E-value=15 Score=32.86 Aligned_cols=21 Identities=24% Similarity=0.475 Sum_probs=17.4
Q ss_pred eEEEeeecCCCcccHHHHHHH
Q 040907 69 FQIADLGCSIGPNTFIAVQNI 89 (184)
Q Consensus 69 ~~IADlGCS~G~NSl~~v~~i 89 (184)
-+|+|+||--|+-.+.+...-
T Consensus 160 ~~vlDlGCG~Gvlg~~la~~~ 180 (300)
T COG2813 160 GKVLDLGCGYGVLGLVLAKKS 180 (300)
T ss_pred CcEEEeCCCccHHHHHHHHhC
Confidence 399999999999888776543
No 79
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=53.57 E-value=25 Score=29.68 Aligned_cols=68 Identities=18% Similarity=0.239 Sum_probs=42.4
Q ss_pred CCceEEEeeecCCCcccHHHH------------HHHHHHHHHHhcCCCCCCCCCcceEEEeCCCCCCchHHHhhhCCCCC
Q 040907 66 SNTFQIADLGCSIGPNTFIAV------------QNIIEAVELKLLQPDHQNISSIEFQVLFNDHYDNDFNTLFKSLPHSR 133 (184)
Q Consensus 66 ~~~~~IADlGCS~G~NSl~~v------------~~iI~~i~~~~~~~~~~~~~~pe~qv~~nDLP~NDFNtLF~~L~~~~ 133 (184)
+..=++.|+|||.|-.|..+. ...|+.-++++.. .|.+++..-|+|.
T Consensus 42 ~ry~~alEvGCs~G~lT~~LA~rCd~LlavDis~~Al~~Ar~Rl~~-------~~~V~~~~~dvp~-------------- 100 (201)
T PF05401_consen 42 RRYRRALEVGCSIGVLTERLAPRCDRLLAVDISPRALARARERLAG-------LPHVEWIQADVPE-------------- 100 (201)
T ss_dssp SSEEEEEEE--TTSHHHHHHGGGEEEEEEEES-HHHHHHHHHHTTT--------SSEEEEES-TTT--------------
T ss_pred cccceeEecCCCccHHHHHHHHhhCceEEEeCCHHHHHHHHHhcCC-------CCCeEEEECcCCC--------------
Confidence 455679999999999998764 5677777777643 3567777777753
Q ss_pred ceEEeecCCcccccccCCCccceeeeccccccccC
Q 040907 134 KYFAAGVPGSFHNRLFPKATLHFVHSSYSLHWLSK 168 (184)
Q Consensus 134 ~~f~~gvpgSFY~rLfP~~Svh~~~Ss~aLHWLS~ 168 (184)
..|...-|+++-+=-+++|+.
T Consensus 101 --------------~~P~~~FDLIV~SEVlYYL~~ 121 (201)
T PF05401_consen 101 --------------FWPEGRFDLIVLSEVLYYLDD 121 (201)
T ss_dssp -----------------SS-EEEEEEES-GGGSSS
T ss_pred --------------CCCCCCeeEEEEehHhHcCCC
Confidence 136666677777777777654
No 80
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=52.80 E-value=8.5 Score=30.42 Aligned_cols=20 Identities=25% Similarity=0.461 Sum_probs=16.4
Q ss_pred ceEEEeeecCCCcccHHHHH
Q 040907 68 TFQIADLGCSIGPNTFIAVQ 87 (184)
Q Consensus 68 ~~~IADlGCS~G~NSl~~v~ 87 (184)
.-+|+|+||.+|.-++.+..
T Consensus 32 ~~~vLDlG~G~G~i~~~la~ 51 (170)
T PF05175_consen 32 GGRVLDLGCGSGVISLALAK 51 (170)
T ss_dssp TCEEEEETSTTSHHHHHHHH
T ss_pred CCeEEEecCChHHHHHHHHH
Confidence 35799999999988887754
No 81
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=50.68 E-value=8.4 Score=32.47 Aligned_cols=53 Identities=19% Similarity=0.214 Sum_probs=35.5
Q ss_pred ceEEEeeecCCCcccHHHH-------------HHHHHHHHHHhcCCCCCCCCCcceEEEeCCCCCCchHHHhhh
Q 040907 68 TFQIADLGCSIGPNTFIAV-------------QNIIEAVELKLLQPDHQNISSIEFQVLFNDHYDNDFNTLFKS 128 (184)
Q Consensus 68 ~~~IADlGCS~G~NSl~~v-------------~~iI~~i~~~~~~~~~~~~~~pe~qv~~nDLP~NDFNtLF~~ 128 (184)
.-+|+||||.+|.-++.+. .+.+++.++.+.... -++.++-.|. -||+.-|.+
T Consensus 46 g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~l~------g~v~f~~~dv--~~~~~~~dt 111 (198)
T COG2263 46 GKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEELL------GDVEFVVADV--SDFRGKFDT 111 (198)
T ss_pred CCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHhhC------CceEEEEcch--hhcCCccce
Confidence 3579999999999888664 356777777665432 2467777776 355555554
No 82
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=48.84 E-value=63 Score=29.11 Aligned_cols=40 Identities=20% Similarity=0.247 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhccCCCCCceEEEeeecCCCcc
Q 040907 39 RVVDAAKELIYEAISDKLDLKLLKFDASNTFQIADLGCSIGPN 81 (184)
Q Consensus 39 ~~i~~~~p~l~~ai~~~~~~~~~~~~~~~~~~IADlGCS~G~N 81 (184)
++|..-|-.|++.|+..+.. + .....+++|.|+-|-+|+-
T Consensus 110 rGIR~Rk~~l~~~i~~ai~~-L--~~~g~pvrIlDIAaG~GRY 149 (311)
T PF12147_consen 110 RGIRQRKVHLEELIRQAIAR-L--REQGRPVRILDIAAGHGRY 149 (311)
T ss_pred HHHHHHHHHHHHHHHHHHHH-H--HhcCCceEEEEeccCCcHH
Confidence 34555555555555543321 1 0246899999999999986
No 83
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=48.54 E-value=12 Score=29.73 Aligned_cols=20 Identities=30% Similarity=0.360 Sum_probs=15.1
Q ss_pred ceEEEeeecCCCcccHHHHH
Q 040907 68 TFQIADLGCSIGPNTFIAVQ 87 (184)
Q Consensus 68 ~~~IADlGCS~G~NSl~~v~ 87 (184)
.-+|.|+||.+|.-+..+..
T Consensus 33 g~~VLDiG~GtG~~~~~l~~ 52 (188)
T TIGR00438 33 GDTVLDLGAAPGGWSQVAVE 52 (188)
T ss_pred CCEEEEecCCCCHHHHHHHH
Confidence 45899999999986555543
No 84
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=48.47 E-value=21 Score=29.09 Aligned_cols=19 Identities=16% Similarity=0.356 Sum_probs=15.6
Q ss_pred ceEEEeeecCCCcccHHHH
Q 040907 68 TFQIADLGCSIGPNTFIAV 86 (184)
Q Consensus 68 ~~~IADlGCS~G~NSl~~v 86 (184)
.-+|.|+||.+|..+..+.
T Consensus 73 ~~~VLDiG~GsG~~~~~la 91 (205)
T PRK13944 73 GMKILEVGTGSGYQAAVCA 91 (205)
T ss_pred CCEEEEECcCccHHHHHHH
Confidence 3689999999999886654
No 85
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=48.17 E-value=14 Score=30.29 Aligned_cols=21 Identities=19% Similarity=0.408 Sum_probs=17.0
Q ss_pred CceEEEeeecCCCcccHHHHH
Q 040907 67 NTFQIADLGCSIGPNTFIAVQ 87 (184)
Q Consensus 67 ~~~~IADlGCS~G~NSl~~v~ 87 (184)
...+|.|+||.+|..++.+..
T Consensus 87 ~~~~ilDig~G~G~~~~~l~~ 107 (251)
T TIGR03534 87 GPLRVLDLGTGSGAIALALAK 107 (251)
T ss_pred CCCeEEEEeCcHhHHHHHHHH
Confidence 346899999999988777654
No 86
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=48.14 E-value=9.6 Score=30.08 Aligned_cols=19 Identities=11% Similarity=0.144 Sum_probs=15.8
Q ss_pred eEEEeeecCCCcccHHHHH
Q 040907 69 FQIADLGCSIGPNTFIAVQ 87 (184)
Q Consensus 69 ~~IADlGCS~G~NSl~~v~ 87 (184)
-+|.|+||.+|..++.+..
T Consensus 21 ~~vLdlG~G~G~~~~~l~~ 39 (179)
T TIGR00537 21 DDVLEIGAGTGLVAIRLKG 39 (179)
T ss_pred CeEEEeCCChhHHHHHHHh
Confidence 4799999999998777654
No 87
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=47.23 E-value=22 Score=29.26 Aligned_cols=19 Identities=11% Similarity=0.359 Sum_probs=15.9
Q ss_pred ceEEEeeecCCCcccHHHH
Q 040907 68 TFQIADLGCSIGPNTFIAV 86 (184)
Q Consensus 68 ~~~IADlGCS~G~NSl~~v 86 (184)
.-+|.|+||.+|..|..+.
T Consensus 77 g~~VLdIG~GsG~~t~~la 95 (212)
T PRK13942 77 GMKVLEIGTGSGYHAAVVA 95 (212)
T ss_pred cCEEEEECCcccHHHHHHH
Confidence 4689999999999986554
No 88
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=47.20 E-value=11 Score=33.63 Aligned_cols=18 Identities=28% Similarity=0.541 Sum_probs=14.7
Q ss_pred eEEEeeecCCCcccHHHH
Q 040907 69 FQIADLGCSIGPNTFIAV 86 (184)
Q Consensus 69 ~~IADlGCS~G~NSl~~v 86 (184)
-+|+|+||.+|..++.++
T Consensus 123 ~~VLDvGCG~G~~~~~~~ 140 (314)
T TIGR00452 123 RTILDVGCGSGYHMWRML 140 (314)
T ss_pred CEEEEeccCCcHHHHHHH
Confidence 589999999999765543
No 89
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=46.91 E-value=48 Score=26.60 Aligned_cols=20 Identities=20% Similarity=0.283 Sum_probs=16.3
Q ss_pred CceEEEeeecCCCcccHHHH
Q 040907 67 NTFQIADLGCSIGPNTFIAV 86 (184)
Q Consensus 67 ~~~~IADlGCS~G~NSl~~v 86 (184)
...+|.|+||.+|..+..+.
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~ 64 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLA 64 (224)
T ss_pred CCCeEEEECCCCCHHHHHHH
Confidence 46799999999998777654
No 90
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=46.04 E-value=94 Score=27.37 Aligned_cols=139 Identities=12% Similarity=0.179 Sum_probs=75.1
Q ss_pred HHHhhhcccccccCCCCC-chhHHhhHHHHHHHHHH--------HHHHHHHHHhhhhhhhccCCCCCceEEEeeecCCCc
Q 040907 10 KKRKLMAQSYPMVSGDGA-HSYAKNSTLQRRVVDAA--------KELIYEAISDKLDLKLLKFDASNTFQIADLGCSIGP 80 (184)
Q Consensus 10 ~~~~~~~~~~~M~gG~G~-~sY~~nS~~Q~~~i~~~--------~p~l~~ai~~~~~~~~~~~~~~~~~~IADlGCS~G~ 80 (184)
.+|+.+.+..+|..-+=+ --|.+++..+....... ..||.+..-+++... ...+-+|-+.||..|.
T Consensus 10 ~a~~~~k~~~~~~~~~~~~~~y~~~~~k~wD~fy~~~~~rFfkdR~wL~~Efpel~~~~-----~~~~~~ilEvGCGvGN 84 (264)
T KOG2361|consen 10 AARKKVKEQSASRVLEEEVVKYEREASKYWDTFYKIHENRFFKDRNWLLREFPELLPVD-----EKSAETILEVGCGVGN 84 (264)
T ss_pred HHHHHHhhccccccchhhhhhhhcchhhhhhhhhhhccccccchhHHHHHhhHHhhCcc-----ccChhhheeeccCCCc
Confidence 456656666666643311 24777777766655432 567777666654422 2233489999999987
Q ss_pred ccHHHHHHHHHHHHHHhcCCCCCCCCCcceEEEeCCCCCCchHHHhhhCCCCC-c--eEEeecCCcccccccCCCcccee
Q 040907 81 NTFIAVQNIIEAVELKLLQPDHQNISSIEFQVLFNDHYDNDFNTLFKSLPHSR-K--YFAAGVPGSFHNRLFPKATLHFV 157 (184)
Q Consensus 81 NSl~~v~~iI~~i~~~~~~~~~~~~~~pe~qv~~nDLP~NDFNtLF~~L~~~~-~--~f~~gvpgSFY~rLfP~~Svh~~ 157 (184)
..+.++... +.|.+.||..|-..+--+-+=++-.-.. . -|+.-.-++=-..-++.+|||++
T Consensus 85 tvfPll~~~----------------~n~~l~v~acDfsp~Ai~~vk~~~~~~e~~~~afv~Dlt~~~~~~~~~~~svD~i 148 (264)
T KOG2361|consen 85 TVFPLLKTS----------------PNNRLKVYACDFSPRAIELVKKSSGYDESRVEAFVWDLTSPSLKEPPEEGSVDII 148 (264)
T ss_pred ccchhhhcC----------------CCCCeEEEEcCCChHHHHHHHhccccchhhhcccceeccchhccCCCCcCccceE
Confidence 766653221 2344788877765543332222211111 1 23333333324556677888887
Q ss_pred eeccccccccCCCcc
Q 040907 158 HSSYSLHWLSKVPKE 172 (184)
Q Consensus 158 ~Ss~aLHWLS~vP~~ 172 (184)
...+. ||-+|++
T Consensus 149 t~IFv---LSAi~pe 160 (264)
T KOG2361|consen 149 TLIFV---LSAIHPE 160 (264)
T ss_pred EEEEE---EeccChH
Confidence 66554 3555544
No 91
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=45.99 E-value=35 Score=26.13 Aligned_cols=22 Identities=18% Similarity=0.243 Sum_probs=18.9
Q ss_pred CCceEEEeeecCCCcccHHHHH
Q 040907 66 SNTFQIADLGCSIGPNTFIAVQ 87 (184)
Q Consensus 66 ~~~~~IADlGCS~G~NSl~~v~ 87 (184)
..+.+|.|+||-.|.-+..+..
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~ 45 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAH 45 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHH
Confidence 5679999999999998887755
No 92
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=45.93 E-value=40 Score=28.52 Aligned_cols=47 Identities=13% Similarity=0.099 Sum_probs=30.9
Q ss_pred ceEEEeeecCCCcccHHHHHH------------HHHHHHHHhcCCCCCCCCCcceEEEeCCCCCCc
Q 040907 68 TFQIADLGCSIGPNTFIAVQN------------IIEAVELKLLQPDHQNISSIEFQVLFNDHYDND 121 (184)
Q Consensus 68 ~~~IADlGCS~G~NSl~~v~~------------iI~~i~~~~~~~~~~~~~~pe~qv~~nDLP~ND 121 (184)
.-+|.|+||..|.-|..+... +++.++++... .+.+.++..|.-.-|
T Consensus 30 ~~~VLEIG~G~G~lt~~L~~~~~~v~~vEid~~~~~~l~~~~~~-------~~~v~ii~~D~~~~~ 88 (258)
T PRK14896 30 GDPVLEIGPGKGALTDELAKRAKKVYAIELDPRLAEFLRDDEIA-------AGNVEIIEGDALKVD 88 (258)
T ss_pred cCeEEEEeCccCHHHHHHHHhCCEEEEEECCHHHHHHHHHHhcc-------CCCEEEEEeccccCC
Confidence 357999999999999998874 45555554421 124666666654433
No 93
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=45.63 E-value=24 Score=30.33 Aligned_cols=19 Identities=26% Similarity=0.336 Sum_probs=16.4
Q ss_pred eEEEeeecCCCcccHHHHH
Q 040907 69 FQIADLGCSIGPNTFIAVQ 87 (184)
Q Consensus 69 ~~IADlGCS~G~NSl~~v~ 87 (184)
.+|.|+||.+|.-++.+..
T Consensus 116 ~~vLDlG~GsG~i~l~la~ 134 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAY 134 (284)
T ss_pred CEEEEEeccHhHHHHHHHH
Confidence 5899999999988877765
No 94
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=42.63 E-value=23 Score=30.78 Aligned_cols=23 Identities=26% Similarity=0.339 Sum_probs=19.9
Q ss_pred CCceEEEeeecCCCcccHHHHHH
Q 040907 66 SNTFQIADLGCSIGPNTFIAVQN 88 (184)
Q Consensus 66 ~~~~~IADlGCS~G~NSl~~v~~ 88 (184)
+..-+|+|+||..|.-+|.+.+.
T Consensus 43 ~~~~~IlDlGaG~G~l~L~la~r 65 (248)
T COG4123 43 PKKGRILDLGAGNGALGLLLAQR 65 (248)
T ss_pred ccCCeEEEecCCcCHHHHHHhcc
Confidence 34789999999999999988776
No 95
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=42.39 E-value=37 Score=31.69 Aligned_cols=74 Identities=22% Similarity=0.357 Sum_probs=37.6
Q ss_pred CceEEEeeecCCCcccHHHHHHH------------------HHHHHHHhcCCCCCCCCCcceEEEeCCCCCCchHHHhhh
Q 040907 67 NTFQIADLGCSIGPNTFIAVQNI------------------IEAVELKLLQPDHQNISSIEFQVLFNDHYDNDFNTLFKS 128 (184)
Q Consensus 67 ~~~~IADlGCS~G~NSl~~v~~i------------------I~~i~~~~~~~~~~~~~~pe~qv~~nDLP~NDFNtLF~~ 128 (184)
+..+|.|.||.+|+-+..++... +.+++++....+- ...|+|+..|.-. +.
T Consensus 186 ~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w----~~~V~vi~~d~r~--v~----- 254 (448)
T PF05185_consen 186 KDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGW----GDKVTVIHGDMRE--VE----- 254 (448)
T ss_dssp TT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTT----TTTEEEEES-TTT--SC-----
T ss_pred cceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCC----CCeEEEEeCcccC--CC-----
Confidence 35899999999999988777653 3333333122211 1248888888621 10
Q ss_pred CCCCCceEEeecCCccc-ccccCC
Q 040907 129 LPHSRKYFAAGVPGSFH-NRLFPK 151 (184)
Q Consensus 129 L~~~~~~f~~gvpgSFY-~rLfP~ 151 (184)
+|..-.+-++=.=|||= +.+.|+
T Consensus 255 lpekvDIIVSElLGsfg~nEl~pE 278 (448)
T PF05185_consen 255 LPEKVDIIVSELLGSFGDNELSPE 278 (448)
T ss_dssp HSS-EEEEEE---BTTBTTTSHHH
T ss_pred CCCceeEEEEeccCCccccccCHH
Confidence 11122566666667764 345554
No 96
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=42.39 E-value=14 Score=30.85 Aligned_cols=22 Identities=18% Similarity=0.410 Sum_probs=17.8
Q ss_pred CceEEEeeecCCCcccHHHHHH
Q 040907 67 NTFQIADLGCSIGPNTFIAVQN 88 (184)
Q Consensus 67 ~~~~IADlGCS~G~NSl~~v~~ 88 (184)
...+|.|+||.+|..++.+...
T Consensus 108 ~~~~vLDiG~GsG~~~~~la~~ 129 (275)
T PRK09328 108 EPLRVLDLGTGSGAIALALAKE 129 (275)
T ss_pred CCCEEEEEcCcHHHHHHHHHHH
Confidence 4568999999999988777643
No 97
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=42.19 E-value=58 Score=30.48 Aligned_cols=45 Identities=13% Similarity=0.190 Sum_probs=28.8
Q ss_pred eEEEeeecCCCcccHHHHH--------------HHHHHHHHHhcCCCCCCCCCcceEEEeCCCCC
Q 040907 69 FQIADLGCSIGPNTFIAVQ--------------NIIEAVELKLLQPDHQNISSIEFQVLFNDHYD 119 (184)
Q Consensus 69 ~~IADlGCS~G~NSl~~v~--------------~iI~~i~~~~~~~~~~~~~~pe~qv~~nDLP~ 119 (184)
-+|.|+||.+|..++.+.. ..++..++.....+ . .+.++..|+..
T Consensus 253 ~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g-----~-rV~fi~gDl~e 311 (423)
T PRK14966 253 GRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLG-----A-RVEFAHGSWFD 311 (423)
T ss_pred CEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC-----C-cEEEEEcchhc
Confidence 4899999999999887653 34555555443221 1 46666677643
No 98
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=41.93 E-value=1.3e+02 Score=27.01 Aligned_cols=17 Identities=24% Similarity=0.427 Sum_probs=12.4
Q ss_pred CceEEEeeecCCCcccH
Q 040907 67 NTFQIADLGCSIGPNTF 83 (184)
Q Consensus 67 ~~~~IADlGCS~G~NSl 83 (184)
...+|.||||.-|.=..
T Consensus 62 ~~~~VLDl~CGkGGDL~ 78 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQ 78 (331)
T ss_dssp TT-EEEEET-TTTTTHH
T ss_pred CCCeEEEecCCCchhHH
Confidence 67999999999998543
No 99
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=41.64 E-value=14 Score=31.91 Aligned_cols=17 Identities=29% Similarity=0.550 Sum_probs=14.0
Q ss_pred eEEEeeecCCCcccHHH
Q 040907 69 FQIADLGCSIGPNTFIA 85 (184)
Q Consensus 69 ~~IADlGCS~G~NSl~~ 85 (184)
-+|.|+||.+|..++.+
T Consensus 161 ~~VLDvGcGsG~lai~a 177 (288)
T TIGR00406 161 KNVIDVGCGSGILSIAA 177 (288)
T ss_pred CEEEEeCCChhHHHHHH
Confidence 58999999999876544
No 100
>PHA02734 coat protein; Provisional
Probab=41.25 E-value=14 Score=29.20 Aligned_cols=41 Identities=20% Similarity=0.150 Sum_probs=29.5
Q ss_pred cccHHHHHHHHHHHHHHhcCCC-CCCCCCcceEEEeCCCCCCc
Q 040907 80 PNTFIAVQNIIEAVELKLLQPD-HQNISSIEFQVLFNDHYDND 121 (184)
Q Consensus 80 ~NSl~~v~~iI~~i~~~~~~~~-~~~~~~pe~qv~~nDLP~ND 121 (184)
.|+-.+|-+||++|++...+.. .. ..--|-+|||+..|.|-
T Consensus 49 e~~k~aIHeiIK~IreA~kp~rn~g-~gfkeawvyfsqvpena 90 (149)
T PHA02734 49 ANAKAAIHAIIKMIKDAMKPLRNKG-KGFKEAWVYFSQVPENA 90 (149)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhcC-CchhHHHHhhhcCcccC
Confidence 4668899999999998765431 11 12347789999999884
No 101
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=41.23 E-value=12 Score=31.51 Aligned_cols=18 Identities=28% Similarity=0.462 Sum_probs=14.2
Q ss_pred ceEEEeeecCCCcccHHH
Q 040907 68 TFQIADLGCSIGPNTFIA 85 (184)
Q Consensus 68 ~~~IADlGCS~G~NSl~~ 85 (184)
.-+|.|+||.+|..++.+
T Consensus 120 ~~~VLDiGcGsG~l~i~~ 137 (250)
T PRK00517 120 GKTVLDVGCGSGILAIAA 137 (250)
T ss_pred CCEEEEeCCcHHHHHHHH
Confidence 358999999999766543
No 102
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=41.08 E-value=84 Score=27.84 Aligned_cols=58 Identities=19% Similarity=0.354 Sum_probs=39.1
Q ss_pred ceEEEeeecCCCcccHHHHHHH-------------HHHHHHHhcCCCCCCCCCcceEEEeCCCCCCchHHHhhhCCC
Q 040907 68 TFQIADLGCSIGPNTFIAVQNI-------------IEAVELKLLQPDHQNISSIEFQVLFNDHYDNDFNTLFKSLPH 131 (184)
Q Consensus 68 ~~~IADlGCS~G~NSl~~v~~i-------------I~~i~~~~~~~~~~~~~~pe~qv~~nDLP~NDFNtLF~~L~~ 131 (184)
-.+|.|+||.-|..++.++... .+..+++....+- .-.++|.+-|. +||+.-|..+-+
T Consensus 73 G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~gl----~~~v~v~l~d~--rd~~e~fDrIvS 143 (283)
T COG2230 73 GMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGL----EDNVEVRLQDY--RDFEEPFDRIVS 143 (283)
T ss_pred CCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHcCC----CcccEEEeccc--cccccccceeee
Confidence 4899999999999999988875 2233443333331 22589999887 456655666553
No 103
>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased
Probab=40.96 E-value=15 Score=28.30 Aligned_cols=26 Identities=12% Similarity=0.135 Sum_probs=18.8
Q ss_pred ccCCCccceee-------ec-cccccccCCCccc
Q 040907 148 LFPKATLHFVH-------SS-YSLHWLSKVPKEL 173 (184)
Q Consensus 148 LfP~~Svh~~~-------Ss-~aLHWLS~vP~~l 173 (184)
++|.++|-|.. |. +.++|+.|+|.++
T Consensus 10 v~p~~sv~LsC~~sg~~~s~e~~~~wvRq~pg~l 43 (115)
T cd05721 10 ASSNGAASLVCEYTYNGFSKEFRASLLKGADSAV 43 (115)
T ss_pred EcCCCCEEEEEEecCCccccEEEEEEEEeCCCCc
Confidence 45666665544 44 8999999999864
No 104
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=40.34 E-value=33 Score=30.13 Aligned_cols=20 Identities=20% Similarity=0.119 Sum_probs=16.7
Q ss_pred eEEEeeecCCCcccHHHHHH
Q 040907 69 FQIADLGCSIGPNTFIAVQN 88 (184)
Q Consensus 69 ~~IADlGCS~G~NSl~~v~~ 88 (184)
-+|.|+||.+|..++.+...
T Consensus 135 ~~VLDlG~GsG~iai~la~~ 154 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYA 154 (307)
T ss_pred CEEEEEechhhHHHHHHHHH
Confidence 58999999999988877543
No 105
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=40.33 E-value=29 Score=29.50 Aligned_cols=20 Identities=25% Similarity=0.371 Sum_probs=17.0
Q ss_pred ceEEEeeecCCCcccHHHHH
Q 040907 68 TFQIADLGCSIGPNTFIAVQ 87 (184)
Q Consensus 68 ~~~IADlGCS~G~NSl~~v~ 87 (184)
..+|.|+||.+|.-++.+..
T Consensus 87 ~~~vLDlg~GsG~i~l~la~ 106 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAA 106 (251)
T ss_pred CCEEEEecCchHHHHHHHHH
Confidence 46899999999999888764
No 106
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=39.72 E-value=39 Score=29.65 Aligned_cols=50 Identities=14% Similarity=0.236 Sum_probs=34.3
Q ss_pred eEEEeeecCCCcccHHHHHH------------HHHHHHHHhcCCCCCCCCCcceEEEeCCCCCCch
Q 040907 69 FQIADLGCSIGPNTFIAVQN------------IIEAVELKLLQPDHQNISSIEFQVLFNDHYDNDF 122 (184)
Q Consensus 69 ~~IADlGCS~G~NSl~~v~~------------iI~~i~~~~~~~~~~~~~~pe~qv~~nDLP~NDF 122 (184)
-+|.|+||..|.-|..++.. .++.++++....+ ..+.++++..|...-|+
T Consensus 38 ~~VLEIG~G~G~LT~~Ll~~~~~V~avEiD~~li~~l~~~~~~~~----~~~~v~ii~~Dal~~~~ 99 (294)
T PTZ00338 38 DTVLEIGPGTGNLTEKLLQLAKKVIAIEIDPRMVAELKKRFQNSP----LASKLEVIEGDALKTEF 99 (294)
T ss_pred CEEEEecCchHHHHHHHHHhCCcEEEEECCHHHHHHHHHHHHhcC----CCCcEEEEECCHhhhcc
Confidence 47999999999999888753 4566666553221 12358888888766554
No 107
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=39.20 E-value=36 Score=28.17 Aligned_cols=19 Identities=16% Similarity=0.011 Sum_probs=16.2
Q ss_pred eEEEeeecCCCcccHHHHH
Q 040907 69 FQIADLGCSIGPNTFIAVQ 87 (184)
Q Consensus 69 ~~IADlGCS~G~NSl~~v~ 87 (184)
-+|.|+||.+|.-++.+++
T Consensus 55 ~~vLDl~~GsG~l~l~~ls 73 (199)
T PRK10909 55 ARCLDCFAGSGALGLEALS 73 (199)
T ss_pred CEEEEcCCCccHHHHHHHH
Confidence 4899999999999987654
No 108
>PRK04148 hypothetical protein; Provisional
Probab=39.04 E-value=1.1e+02 Score=24.09 Aligned_cols=45 Identities=11% Similarity=0.247 Sum_probs=27.7
Q ss_pred CceEEEeeecCCCcc-cHHHHH------------HHHHHHHHHhcCCCCCCCCCcceEEEeCCCCCCchH
Q 040907 67 NTFQIADLGCSIGPN-TFIAVQ------------NIIEAVELKLLQPDHQNISSIEFQVLFNDHYDNDFN 123 (184)
Q Consensus 67 ~~~~IADlGCS~G~N-Sl~~v~------------~iI~~i~~~~~~~~~~~~~~pe~qv~~nDLP~NDFN 123 (184)
+..+|+|.||..|.. +..+.+ ..++.+++ .-++++..|+...|+.
T Consensus 16 ~~~kileIG~GfG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~------------~~~~~v~dDlf~p~~~ 73 (134)
T PRK04148 16 KNKKIVELGIGFYFKVAKKLKESGFDVIVIDINEKAVEKAKK------------LGLNAFVDDLFNPNLE 73 (134)
T ss_pred cCCEEEEEEecCCHHHHHHHHHCCCEEEEEECCHHHHHHHHH------------hCCeEEECcCCCCCHH
Confidence 347899999999863 333322 11221111 1268889999888875
No 109
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=37.49 E-value=20 Score=31.81 Aligned_cols=20 Identities=20% Similarity=0.406 Sum_probs=17.5
Q ss_pred ceEEEeeecCCCcccHHHHH
Q 040907 68 TFQIADLGCSIGPNTFIAVQ 87 (184)
Q Consensus 68 ~~~IADlGCS~G~NSl~~v~ 87 (184)
..+|.|+||.+|..++.+..
T Consensus 145 ~~~VLDlGcGtG~~a~~la~ 164 (315)
T PLN02585 145 GVTVCDAGCGTGSLAIPLAL 164 (315)
T ss_pred CCEEEEecCCCCHHHHHHHH
Confidence 46999999999999888765
No 110
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=37.24 E-value=36 Score=30.90 Aligned_cols=20 Identities=25% Similarity=0.517 Sum_probs=16.5
Q ss_pred ceEEEeeecCCCcccHHHHH
Q 040907 68 TFQIADLGCSIGPNTFIAVQ 87 (184)
Q Consensus 68 ~~~IADlGCS~G~NSl~~v~ 87 (184)
.-+|.|+||..|..++.+..
T Consensus 168 g~rVLDIGcG~G~~a~~la~ 187 (383)
T PRK11705 168 GMRVLDIGCGWGGLARYAAE 187 (383)
T ss_pred CCEEEEeCCCccHHHHHHHH
Confidence 35899999999998876654
No 111
>PRK14968 putative methyltransferase; Provisional
Probab=36.96 E-value=21 Score=27.66 Aligned_cols=18 Identities=17% Similarity=0.318 Sum_probs=15.2
Q ss_pred eEEEeeecCCCcccHHHH
Q 040907 69 FQIADLGCSIGPNTFIAV 86 (184)
Q Consensus 69 ~~IADlGCS~G~NSl~~v 86 (184)
-+|.|+||.+|..++.+.
T Consensus 25 ~~vLd~G~G~G~~~~~l~ 42 (188)
T PRK14968 25 DRVLEVGTGSGIVAIVAA 42 (188)
T ss_pred CEEEEEccccCHHHHHHH
Confidence 479999999999877664
No 112
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=36.80 E-value=55 Score=30.00 Aligned_cols=20 Identities=15% Similarity=-0.001 Sum_probs=17.2
Q ss_pred eEEEeeecCCCcccHHHHHH
Q 040907 69 FQIADLGCSIGPNTFIAVQN 88 (184)
Q Consensus 69 ~~IADlGCS~G~NSl~~v~~ 88 (184)
-+|.|+||++|.-|+.+...
T Consensus 252 ~~VLDlgaG~G~~t~~la~~ 271 (444)
T PRK14902 252 DTVLDACAAPGGKTTHIAEL 271 (444)
T ss_pred CEEEEeCCCCCHHHHHHHHH
Confidence 57999999999999877654
No 113
>PRK14967 putative methyltransferase; Provisional
Probab=36.66 E-value=15 Score=30.12 Aligned_cols=19 Identities=21% Similarity=0.197 Sum_probs=15.8
Q ss_pred eEEEeeecCCCcccHHHHH
Q 040907 69 FQIADLGCSIGPNTFIAVQ 87 (184)
Q Consensus 69 ~~IADlGCS~G~NSl~~v~ 87 (184)
-+|.|+||.+|..++.+..
T Consensus 38 ~~vLDlGcG~G~~~~~la~ 56 (223)
T PRK14967 38 RRVLDLCTGSGALAVAAAA 56 (223)
T ss_pred CeEEEecCCHHHHHHHHHH
Confidence 5899999999998776544
No 114
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=36.49 E-value=19 Score=32.48 Aligned_cols=19 Identities=26% Similarity=0.564 Sum_probs=15.9
Q ss_pred eEEEeeecCCCcccHHHHH
Q 040907 69 FQIADLGCSIGPNTFIAVQ 87 (184)
Q Consensus 69 ~~IADlGCS~G~NSl~~v~ 87 (184)
-+|+|+||..|.-++.+..
T Consensus 117 k~VLDIGC~nGY~~frM~~ 135 (315)
T PF08003_consen 117 KRVLDIGCNNGYYSFRMLG 135 (315)
T ss_pred CEEEEecCCCcHHHHHHhh
Confidence 5899999999998876653
No 115
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=36.42 E-value=28 Score=24.85 Aligned_cols=21 Identities=24% Similarity=0.366 Sum_probs=17.3
Q ss_pred eEEEeeecCCCcccHHHHHHH
Q 040907 69 FQIADLGCSIGPNTFIAVQNI 89 (184)
Q Consensus 69 ~~IADlGCS~G~NSl~~v~~i 89 (184)
.+|.|+||-+|.-++.+....
T Consensus 2 ~~vlD~~~G~G~~~~~~~~~~ 22 (117)
T PF13659_consen 2 DRVLDPGCGSGTFLLAALRRG 22 (117)
T ss_dssp EEEEEETSTTCHHHHHHHHHC
T ss_pred CEEEEcCcchHHHHHHHHHHC
Confidence 589999999999888776553
No 116
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=35.68 E-value=18 Score=30.27 Aligned_cols=24 Identities=29% Similarity=0.617 Sum_probs=16.3
Q ss_pred cCCCccceeeeccccccccCCCccc
Q 040907 149 FPKATLHFVHSSYSLHWLSKVPKEL 173 (184)
Q Consensus 149 fP~~Svh~~~Ss~aLHWLS~vP~~l 173 (184)
||++|.|+++-+-+|+=+.+ |+.+
T Consensus 71 f~d~sFD~VIlsqtLQ~~~~-P~~v 94 (193)
T PF07021_consen 71 FPDQSFDYVILSQTLQAVRR-PDEV 94 (193)
T ss_pred CCCCCccEEehHhHHHhHhH-HHHH
Confidence 78888888887777765533 4443
No 117
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=35.52 E-value=23 Score=29.48 Aligned_cols=20 Identities=5% Similarity=-0.057 Sum_probs=17.5
Q ss_pred eEEEeeecCCCcccHHHHHH
Q 040907 69 FQIADLGCSIGPNTFIAVQN 88 (184)
Q Consensus 69 ~~IADlGCS~G~NSl~~v~~ 88 (184)
-+|.|+||-.|+|++.+.+.
T Consensus 36 ~rvLd~GCG~G~da~~LA~~ 55 (213)
T TIGR03840 36 ARVFVPLCGKSLDLAWLAEQ 55 (213)
T ss_pred CeEEEeCCCchhHHHHHHhC
Confidence 59999999999999988654
No 118
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=35.06 E-value=51 Score=28.75 Aligned_cols=19 Identities=21% Similarity=0.275 Sum_probs=16.8
Q ss_pred eEEEeeecCCCcccHHHHH
Q 040907 69 FQIADLGCSIGPNTFIAVQ 87 (184)
Q Consensus 69 ~~IADlGCS~G~NSl~~v~ 87 (184)
-+|.|+||.+|..++.+..
T Consensus 175 ~~VLDl~cG~G~~sl~la~ 193 (315)
T PRK03522 175 RSMWDLFCGVGGFGLHCAT 193 (315)
T ss_pred CEEEEccCCCCHHHHHHHh
Confidence 5899999999999988774
No 119
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=34.93 E-value=23 Score=31.72 Aligned_cols=16 Identities=25% Similarity=0.636 Sum_probs=13.4
Q ss_pred EEEeeecCCCcccHHH
Q 040907 70 QIADLGCSIGPNTFIA 85 (184)
Q Consensus 70 ~IADlGCS~G~NSl~~ 85 (184)
+|+|+||..|..++.+
T Consensus 199 ~VLDlGCG~G~ls~~l 214 (342)
T PRK09489 199 KVLDVGCGAGVLSAVL 214 (342)
T ss_pred eEEEeccCcCHHHHHH
Confidence 7999999999876554
No 120
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=33.85 E-value=58 Score=30.00 Aligned_cols=20 Identities=15% Similarity=0.154 Sum_probs=16.9
Q ss_pred eEEEeeecCCCcccHHHHHH
Q 040907 69 FQIADLGCSIGPNTFIAVQN 88 (184)
Q Consensus 69 ~~IADlGCS~G~NSl~~v~~ 88 (184)
-+|.|+||+.|.-|+.+...
T Consensus 239 ~~VLD~cagpGgkt~~la~~ 258 (431)
T PRK14903 239 LRVLDTCAAPGGKTTAIAEL 258 (431)
T ss_pred CEEEEeCCCccHHHHHHHHH
Confidence 47999999999998877654
No 121
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=33.72 E-value=44 Score=29.14 Aligned_cols=34 Identities=24% Similarity=0.354 Sum_probs=24.7
Q ss_pred HHHHHHhhhhhhhccCCCCCceEEEeeecCCCcccHHHHHH
Q 040907 48 IYEAISDKLDLKLLKFDASNTFQIADLGCSIGPNTFIAVQN 88 (184)
Q Consensus 48 l~~ai~~~~~~~~~~~~~~~~~~IADlGCS~G~NSl~~v~~ 88 (184)
|++|+++ ..+ ..+--++.|+|.|+|.-|-.+++.
T Consensus 67 L~~ale~-F~l------~~k~kv~LDiGsSTGGFTd~lLq~ 100 (245)
T COG1189 67 LEKALEE-FEL------DVKGKVVLDIGSSTGGFTDVLLQR 100 (245)
T ss_pred HHHHHHh-cCc------CCCCCEEEEecCCCccHHHHHHHc
Confidence 5666654 332 245678999999999999887665
No 122
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=33.58 E-value=28 Score=28.01 Aligned_cols=20 Identities=35% Similarity=0.476 Sum_probs=16.0
Q ss_pred CceEEEeeecCCCcccHHHH
Q 040907 67 NTFQIADLGCSIGPNTFIAV 86 (184)
Q Consensus 67 ~~~~IADlGCS~G~NSl~~v 86 (184)
..-+|.|+||.+|.-++.+.
T Consensus 40 ~~~~vlDlG~GtG~~s~~~a 59 (198)
T PRK00377 40 KGDMILDIGCGTGSVTVEAS 59 (198)
T ss_pred CcCEEEEeCCcCCHHHHHHH
Confidence 34689999999998887653
No 123
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=32.65 E-value=48 Score=29.55 Aligned_cols=20 Identities=15% Similarity=0.373 Sum_probs=16.8
Q ss_pred ceEEEeeecCCCcccHHHHH
Q 040907 68 TFQIADLGCSIGPNTFIAVQ 87 (184)
Q Consensus 68 ~~~IADlGCS~G~NSl~~v~ 87 (184)
.-+|.|+||.+|..++.+..
T Consensus 81 g~~VLDIG~GtG~~a~~LA~ 100 (322)
T PRK13943 81 GMRVLEIGGGTGYNAAVMSR 100 (322)
T ss_pred CCEEEEEeCCccHHHHHHHH
Confidence 35899999999999887754
No 124
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=32.61 E-value=27 Score=27.33 Aligned_cols=20 Identities=20% Similarity=0.333 Sum_probs=17.4
Q ss_pred cCCCccceeeeccccccccC
Q 040907 149 FPKATLHFVHSSYSLHWLSK 168 (184)
Q Consensus 149 fP~~Svh~~~Ss~aLHWLS~ 168 (184)
|++++.|++++.+++||+..
T Consensus 40 ~~~~~fD~v~~~~~l~~~~d 59 (160)
T PLN02232 40 FDDCEFDAVTMGYGLRNVVD 59 (160)
T ss_pred CCCCCeeEEEecchhhcCCC
Confidence 57889999999999999754
No 125
>cd07378 MPP_ACP5 Homo sapiens acid phosphatase 5 and related proteins, metallophosphatase domain. Acid phosphatase 5 (ACP5) removes the mannose 6-phosphate recognition marker from lysosomal proteins. The exact site of dephosphorylation is not clear. Evidence suggests dephosphorylation may take place in a prelysosomal compartment as well as in the lysosome. ACP5 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site ma
Probab=32.50 E-value=1.3e+02 Score=25.11 Aligned_cols=40 Identities=10% Similarity=0.197 Sum_probs=23.3
Q ss_pred eEEEeeecCCCcccHHHHHHHHHHHHHHhcCCCCCCCCCcceEEEeCCCC
Q 040907 69 FQIADLGCSIGPNTFIAVQNIIEAVELKLLQPDHQNISSIEFQVLFNDHY 118 (184)
Q Consensus 69 ~~IADlGCS~G~NSl~~v~~iI~~i~~~~~~~~~~~~~~pe~qv~~nDLP 118 (184)
+.+.|.||...++--.+...+.+.+++ ..|+|-|+.-|+-
T Consensus 4 ~~~gD~g~~~~~~~~~~~~~~~~~~~~----------~~~dfvv~~GD~~ 43 (277)
T cd07378 4 LALGDWGGGGTAGQKAVAKAMAKVAAE----------LGPDFILSLGDNF 43 (277)
T ss_pred EEEeecCCCCCHHHHHHHHHHHHHHHh----------cCCCEEEeCCCcc
Confidence 578999987223332232233332222 1568999999984
No 126
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=32.17 E-value=24 Score=31.53 Aligned_cols=20 Identities=25% Similarity=0.431 Sum_probs=16.5
Q ss_pred CceEEEeeecCCCcccHHHH
Q 040907 67 NTFQIADLGCSIGPNTFIAV 86 (184)
Q Consensus 67 ~~~~IADlGCS~G~NSl~~v 86 (184)
+.-++.|+||-||--++...
T Consensus 162 ~g~~vlDvGcGSGILaIAa~ 181 (300)
T COG2264 162 KGKTVLDVGCGSGILAIAAA 181 (300)
T ss_pred CCCEEEEecCChhHHHHHHH
Confidence 35789999999998887765
No 127
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=31.56 E-value=76 Score=28.35 Aligned_cols=25 Identities=12% Similarity=0.092 Sum_probs=20.1
Q ss_pred CCceEEEeeecCCCcccHHHHHHHH
Q 040907 66 SNTFQIADLGCSIGPNTFIAVQNII 90 (184)
Q Consensus 66 ~~~~~IADlGCS~G~NSl~~v~~iI 90 (184)
+...+|.||||.+|.-|-.+++.+.
T Consensus 75 ~~~~~lIELGsG~~~Kt~~LL~aL~ 99 (319)
T TIGR03439 75 PSGSMLVELGSGNLRKVGILLEALE 99 (319)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHH
Confidence 3456899999999999888777764
No 128
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=30.70 E-value=29 Score=30.66 Aligned_cols=18 Identities=28% Similarity=0.601 Sum_probs=14.7
Q ss_pred EEEeeecCCCcccHHHHH
Q 040907 70 QIADLGCSIGPNTFIAVQ 87 (184)
Q Consensus 70 ~IADlGCS~G~NSl~~v~ 87 (184)
+|.|+||-||--++.+..
T Consensus 164 ~vLDvG~GSGILaiaA~k 181 (295)
T PF06325_consen 164 RVLDVGCGSGILAIAAAK 181 (295)
T ss_dssp EEEEES-TTSHHHHHHHH
T ss_pred EEEEeCCcHHHHHHHHHH
Confidence 999999999998887754
No 129
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=29.28 E-value=68 Score=26.03 Aligned_cols=20 Identities=15% Similarity=-0.011 Sum_probs=17.6
Q ss_pred eEEEeeecCCCcccHHHHHH
Q 040907 69 FQIADLGCSIGPNTFIAVQN 88 (184)
Q Consensus 69 ~~IADlGCS~G~NSl~~v~~ 88 (184)
-++.|++|.+|.-++.+.+.
T Consensus 51 ~~vLDLfaGsG~lglea~sr 70 (189)
T TIGR00095 51 AHLLDVFAGSGLLGEEALSR 70 (189)
T ss_pred CEEEEecCCCcHHHHHHHhC
Confidence 57999999999999998863
No 130
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=28.43 E-value=72 Score=27.33 Aligned_cols=22 Identities=27% Similarity=0.296 Sum_probs=16.8
Q ss_pred CceEEEeeecCCCcccHHHHHH
Q 040907 67 NTFQIADLGCSIGPNTFIAVQN 88 (184)
Q Consensus 67 ~~~~IADlGCS~G~NSl~~v~~ 88 (184)
.--+|.|.|||-|.=|.-+++.
T Consensus 69 p~~~VlD~G~APGsWsQVavqr 90 (232)
T KOG4589|consen 69 PEDTVLDCGAAPGSWSQVAVQR 90 (232)
T ss_pred CCCEEEEccCCCChHHHHHHHh
Confidence 3578999999999876655443
No 131
>TIGR02727 MTHFS_bact 5,10-methenyltetrahydrofolate synthetase. This enzyme, 5,10-methenyltetrahydrofolate synthetase, is also called 5-formyltetrahydrofolate cycloligase. Function of bacterial proteins in this family was inferred originally from the known activity of eukaryotic homologs. Recently, activity was shown explicitly for the member from Mycoplasma pneumonia. Members of this family from alpha- and gamma-proteobacteria, designated ygfA, are often found in an operon with 6S structural RNA, and show a similar pattern of high expression during stationary phase. The function may be to deplete folate to slow 1-carbon biosynthetic metabolism.
Probab=28.15 E-value=25 Score=28.20 Aligned_cols=40 Identities=18% Similarity=0.443 Sum_probs=27.4
Q ss_pred EEeecCCcccccccCCCccc--eeeeccccccccCCCccccc
Q 040907 136 FAAGVPGSFHNRLFPKATLH--FVHSSYSLHWLSKVPKELVD 175 (184)
Q Consensus 136 f~~gvpgSFY~rLfP~~Svh--~~~Ss~aLHWLS~vP~~l~d 175 (184)
+=.|.||.||+|.|..-.-. .+-=+|....+.++|.+-.|
T Consensus 131 ~RLG~GgGyYDR~L~~~~~~~~~igv~~~~q~~~~lp~e~~D 172 (181)
T TIGR02727 131 YRLGYGGGYYDRFLANLKGKTVVVGLAFDFQLVDELPREPHD 172 (181)
T ss_pred ccccCCcchHHHHHHhcccCCCEEEEEecceeeCccCCCccC
Confidence 45699999999999863322 33334677788888865544
No 132
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=27.23 E-value=39 Score=28.15 Aligned_cols=21 Identities=5% Similarity=0.017 Sum_probs=17.7
Q ss_pred ceEEEeeecCCCcccHHHHHH
Q 040907 68 TFQIADLGCSIGPNTFIAVQN 88 (184)
Q Consensus 68 ~~~IADlGCS~G~NSl~~v~~ 88 (184)
.-+|.|.||..|+|++.+.+.
T Consensus 38 ~~rvL~~gCG~G~da~~LA~~ 58 (218)
T PRK13255 38 GSRVLVPLCGKSLDMLWLAEQ 58 (218)
T ss_pred CCeEEEeCCCChHhHHHHHhC
Confidence 359999999999999977654
No 133
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=27.10 E-value=73 Score=26.70 Aligned_cols=20 Identities=15% Similarity=0.152 Sum_probs=17.2
Q ss_pred ceEEEeeecCCCcccHHHHH
Q 040907 68 TFQIADLGCSIGPNTFIAVQ 87 (184)
Q Consensus 68 ~~~IADlGCS~G~NSl~~v~ 87 (184)
.-+|.|+||..|.-|..+..
T Consensus 30 ~~~VLEiG~G~G~lt~~L~~ 49 (253)
T TIGR00755 30 GDVVLEIGPGLGALTEPLLK 49 (253)
T ss_pred cCEEEEeCCCCCHHHHHHHH
Confidence 45899999999999888765
No 134
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=27.08 E-value=41 Score=27.39 Aligned_cols=19 Identities=21% Similarity=0.277 Sum_probs=15.0
Q ss_pred ceEEEeeecCCCcccHHHH
Q 040907 68 TFQIADLGCSIGPNTFIAV 86 (184)
Q Consensus 68 ~~~IADlGCS~G~NSl~~v 86 (184)
..+|.|+||.+|..+..+.
T Consensus 49 ~~~vLdiG~G~G~~~~~l~ 67 (233)
T PRK05134 49 GKRVLDVGCGGGILSESMA 67 (233)
T ss_pred CCeEEEeCCCCCHHHHHHH
Confidence 4689999999998765553
No 135
>TIGR03099 dCO2ase_PEP1 pyridoxal-dependent decarboxylase, exosortase system type 1 associated. The sequences in this family contain the pyridoxal binding domain (pfam02784) and C-terminal sheet domain (pfam00278) of a family of Pyridoxal-dependent decarboxylases. Characterized enzymes in this family decarboxylate substrates such as ornithine, diaminopimelate and arginine. The genes of the family modeled here, with the exception of those observed in certain Burkholderia species, are all found in the context of exopolysaccharide biosynthesis loci containing the exosortase/PEP-CTERM protein sorting system. More specifically, these are characteristic of the type 1 exosortase system represented by the Genome Property GenProp0652. The substrate of these enzymes may be a precursor of the carrier or linker which is hypothesized to release the PEP-CTERM protein from the exosortase enzyme. These enzymes are apparently most closely related to the diaminopimelate decarboxylase modeled by TIGR01048
Probab=26.32 E-value=4.7e+02 Score=23.29 Aligned_cols=14 Identities=21% Similarity=0.451 Sum_probs=10.7
Q ss_pred CCcCCCcHHHHhhh
Q 040907 2 SDLGISSEKKRKLM 15 (184)
Q Consensus 2 ~~~~~~~~~~~~~~ 15 (184)
+.||++.|+.+++.
T Consensus 164 srFGi~~~e~~~~~ 177 (398)
T TIGR03099 164 KQFGIDAEQVPAAL 177 (398)
T ss_pred CcCCCCHHHHHHHH
Confidence 67899988877653
No 136
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=25.75 E-value=43 Score=30.66 Aligned_cols=20 Identities=15% Similarity=0.061 Sum_probs=17.0
Q ss_pred eEEEeeecCCCcccHHHHHH
Q 040907 69 FQIADLGCSIGPNTFIAVQN 88 (184)
Q Consensus 69 ~~IADlGCS~G~NSl~~v~~ 88 (184)
-+|.|+||++|.-|+.+...
T Consensus 246 ~~VLDlgaG~G~~t~~la~~ 265 (427)
T PRK10901 246 ERVLDACAAPGGKTAHILEL 265 (427)
T ss_pred CEEEEeCCCCChHHHHHHHH
Confidence 58999999999998877654
No 137
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=25.44 E-value=34 Score=25.42 Aligned_cols=18 Identities=22% Similarity=0.516 Sum_probs=14.4
Q ss_pred EEEeeecCCCcccHHHHH
Q 040907 70 QIADLGCSIGPNTFIAVQ 87 (184)
Q Consensus 70 ~IADlGCS~G~NSl~~v~ 87 (184)
+|.|+||..|.-++.+..
T Consensus 1 ~vlDiGa~~G~~~~~~~~ 18 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFAR 18 (143)
T ss_pred CEEEccCCccHHHHHHHH
Confidence 478999999988776643
No 138
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=25.34 E-value=2.5e+02 Score=25.36 Aligned_cols=45 Identities=13% Similarity=0.202 Sum_probs=34.4
Q ss_pred CCceEEEeeecCCCcccHHHHHHHHHHHHHHhcCCCCCCCCCcceEEEeCCCCCCc
Q 040907 66 SNTFQIADLGCSIGPNTFIAVQNIIEAVELKLLQPDHQNISSIEFQVLFNDHYDND 121 (184)
Q Consensus 66 ~~~~~IADlGCS~G~NSl~~v~~iI~~i~~~~~~~~~~~~~~pe~qv~~nDLP~ND 121 (184)
.+.+-|.|||...|- -+-.+|+++.++. + .+|.+.+.--+.|...
T Consensus 109 ~~~vHIID~~i~~G~----QW~~LiqaLa~R~---~----gpp~LrIT~i~~~~~~ 153 (374)
T PF03514_consen 109 ERRVHIIDFGIGFGV----QWPSLIQALASRP---G----GPPSLRITGIGPPNSG 153 (374)
T ss_pred CcceEEEeccCCcch----HHHHHHHHHhcCC---C----CCCeEEEEeccCCCCC
Confidence 467999999999883 6777888887643 1 3778998888887654
No 139
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=25.29 E-value=89 Score=28.67 Aligned_cols=19 Identities=26% Similarity=0.387 Sum_probs=16.5
Q ss_pred eEEEeeecCCCcccHHHHH
Q 040907 69 FQIADLGCSIGPNTFIAVQ 87 (184)
Q Consensus 69 ~~IADlGCS~G~NSl~~v~ 87 (184)
-+|.|+||.+|..++.+..
T Consensus 299 ~~VLDlgcGtG~~sl~la~ 317 (443)
T PRK13168 299 DRVLDLFCGLGNFTLPLAR 317 (443)
T ss_pred CEEEEEeccCCHHHHHHHH
Confidence 5899999999999888764
No 140
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=25.16 E-value=84 Score=25.95 Aligned_cols=45 Identities=20% Similarity=0.361 Sum_probs=24.0
Q ss_pred CCceEEEeeecCCCcccHHHHHHHHHHHHHHhcCCCCCCCCCcceEEEeCCCCC
Q 040907 66 SNTFQIADLGCSIGPNTFIAVQNIIEAVELKLLQPDHQNISSIEFQVLFNDHYD 119 (184)
Q Consensus 66 ~~~~~IADlGCS~G~NSl~~v~~iI~~i~~~~~~~~~~~~~~pe~qv~~nDLP~ 119 (184)
.++++|-..|||+|-=.-.+.=-+-+... ... .-.++|+-+|+-.
T Consensus 30 ~~~lrIWSagCStGeE~YSlAmll~e~~~----~~~-----~~~~~I~atDi~~ 74 (196)
T PF01739_consen 30 GRPLRIWSAGCSTGEEPYSLAMLLLELLP----GAL-----GWDFRILATDISP 74 (196)
T ss_dssp -S-EEEEETT-TTTHHHHHHHHHHHHHH-----S-T-----T-SEEEEEEES-H
T ss_pred CCCeEEEECCCCCChhHHHHHHHHHHHhc----ccC-----CCceEEEEEECCH
Confidence 47899999999999654433222222111 111 2269999998843
No 141
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=25.11 E-value=1.2e+02 Score=25.78 Aligned_cols=38 Identities=13% Similarity=0.149 Sum_probs=26.0
Q ss_pred HHHHHHHHHhhhhhhhccCCCCCceEEEeeecCCCcccHHHHHHHH
Q 040907 45 KELIYEAISDKLDLKLLKFDASNTFQIADLGCSIGPNTFIAVQNII 90 (184)
Q Consensus 45 ~p~l~~ai~~~~~~~~~~~~~~~~~~IADlGCS~G~NSl~~v~~iI 90 (184)
++.||++..++- ...+--.+++||.||--|-.+.+.+.
T Consensus 29 lDaLekd~~eL~--------~~~~~i~lEIG~GSGvvstfL~~~i~ 66 (209)
T KOG3191|consen 29 LDALEKDAAELK--------GHNPEICLEIGCGSGVVSTFLASVIG 66 (209)
T ss_pred HHHHHHHHHHHh--------hcCceeEEEecCCcchHHHHHHHhcC
Confidence 455666665521 12256789999999988877777765
No 142
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=24.43 E-value=34 Score=29.74 Aligned_cols=21 Identities=24% Similarity=0.268 Sum_probs=17.9
Q ss_pred EEEeeecCCCcccHHHHHHHH
Q 040907 70 QIADLGCSIGPNTFIAVQNII 90 (184)
Q Consensus 70 ~IADlGCS~G~NSl~~v~~iI 90 (184)
+|.|+||.||.-++.+....-
T Consensus 113 ~ilDlGTGSG~iai~la~~~~ 133 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGP 133 (280)
T ss_pred cEEEecCChHHHHHHHHhhCc
Confidence 899999999999888766553
No 143
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=24.34 E-value=40 Score=31.85 Aligned_cols=20 Identities=20% Similarity=0.225 Sum_probs=16.6
Q ss_pred ceEEEeeecCCCcccHHHHH
Q 040907 68 TFQIADLGCSIGPNTFIAVQ 87 (184)
Q Consensus 68 ~~~IADlGCS~G~NSl~~v~ 87 (184)
.-+|.|+||.+|..++.+..
T Consensus 139 ~~~VLDlG~GsG~iai~la~ 158 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLC 158 (506)
T ss_pred CCEEEEccCchhHHHHHHHH
Confidence 46899999999998886654
No 144
>PLN03075 nicotianamine synthase; Provisional
Probab=24.26 E-value=53 Score=29.21 Aligned_cols=20 Identities=25% Similarity=0.173 Sum_probs=15.2
Q ss_pred CceEEEeeecCCCcccHHHH
Q 040907 67 NTFQIADLGCSIGPNTFIAV 86 (184)
Q Consensus 67 ~~~~IADlGCS~G~NSl~~v 86 (184)
.+=+|+|+||..|+-|...+
T Consensus 123 ~p~~VldIGcGpgpltaiil 142 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVL 142 (296)
T ss_pred CCCEEEEECCCCcHHHHHHH
Confidence 45679999999887765544
No 145
>PRK02289 4-oxalocrotonate tautomerase; Provisional
Probab=24.26 E-value=79 Score=20.71 Aligned_cols=41 Identities=12% Similarity=0.152 Sum_probs=25.0
Q ss_pred CcccHHHHHHHHHHHHHHhcCCCCCCCCCcceEEEeCCCCCCch
Q 040907 79 GPNTFIAVQNIIEAVELKLLQPDHQNISSIEFQVLFNDHYDNDF 122 (184)
Q Consensus 79 G~NSl~~v~~iI~~i~~~~~~~~~~~~~~pe~qv~~nDLP~NDF 122 (184)
|+ |-..-..+++.|.+......+ .+...+.|+++|.|..+|
T Consensus 11 Gr-s~EqK~~L~~~it~a~~~~~~--~p~~~v~V~i~ev~~~~~ 51 (60)
T PRK02289 11 GR-SQEQKNALAREVTEVVSRIAK--APKEAIHVFINDMPEGTY 51 (60)
T ss_pred CC-CHHHHHHHHHHHHHHHHHHhC--cCcceEEEEEEEeChhhe
Confidence 55 666666666666554333211 234469999999986543
No 146
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=23.63 E-value=53 Score=30.18 Aligned_cols=19 Identities=16% Similarity=0.212 Sum_probs=15.9
Q ss_pred eEEEeeecCCCcccHHHHH
Q 040907 69 FQIADLGCSIGPNTFIAVQ 87 (184)
Q Consensus 69 ~~IADlGCS~G~NSl~~v~ 87 (184)
-+|.|+||++|..|+.+..
T Consensus 252 ~~VLDlgaG~G~kt~~la~ 270 (445)
T PRK14904 252 STVLDLCAAPGGKSTFMAE 270 (445)
T ss_pred CEEEEECCCCCHHHHHHHH
Confidence 5799999999998876654
No 147
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=23.52 E-value=59 Score=29.79 Aligned_cols=20 Identities=20% Similarity=-0.001 Sum_probs=16.8
Q ss_pred eEEEeeecCCCcccHHHHHH
Q 040907 69 FQIADLGCSIGPNTFIAVQN 88 (184)
Q Consensus 69 ~~IADlGCS~G~NSl~~v~~ 88 (184)
-+|.|+||++|..|+.+...
T Consensus 254 ~~VLDl~ag~G~kt~~la~~ 273 (434)
T PRK14901 254 EVILDACAAPGGKTTHIAEL 273 (434)
T ss_pred CEEEEeCCCCchhHHHHHHH
Confidence 57999999999999876543
No 148
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=23.34 E-value=48 Score=28.22 Aligned_cols=19 Identities=16% Similarity=0.155 Sum_probs=16.4
Q ss_pred eEEEeeecCCCcccHHHHH
Q 040907 69 FQIADLGCSIGPNTFIAVQ 87 (184)
Q Consensus 69 ~~IADlGCS~G~NSl~~v~ 87 (184)
-+|.|+||+.|.-|+.+..
T Consensus 73 ~~VLDl~ag~G~kt~~la~ 91 (264)
T TIGR00446 73 ERVLDMAAAPGGKTTQISA 91 (264)
T ss_pred CEEEEECCCchHHHHHHHH
Confidence 5799999999999987654
No 149
>PRK10333 5-formyltetrahydrofolate cyclo-ligase family protein; Provisional
Probab=23.17 E-value=34 Score=27.68 Aligned_cols=39 Identities=21% Similarity=0.213 Sum_probs=27.4
Q ss_pred EEeecCCcccccccCCCc----cceeeeccccccccCCCccccc
Q 040907 136 FAAGVPGSFHNRLFPKAT----LHFVHSSYSLHWLSKVPKELVD 175 (184)
Q Consensus 136 f~~gvpgSFY~rLfP~~S----vh~~~Ss~aLHWLS~vP~~l~d 175 (184)
+=.|.||.||+|.++.-+ .-++. .|..+.+.++|.+-.|
T Consensus 125 ~RLG~GgGyYDR~L~~~~~~~~~~igl-a~~~Q~~~~ip~e~hD 167 (182)
T PRK10333 125 QRLGMGGGFYDRTLQNWQHYKTQPVGY-AHDCQLVEKLPVEEWD 167 (182)
T ss_pred CcccCCcchHHHHHHHhcccCCcEEEE-eeeeEEeCCcCCCccc
Confidence 556999999999999632 22444 5666777888866555
No 150
>PHA03411 putative methyltransferase; Provisional
Probab=23.13 E-value=46 Score=29.43 Aligned_cols=18 Identities=28% Similarity=0.390 Sum_probs=14.5
Q ss_pred eEEEeeecCCCcccHHHH
Q 040907 69 FQIADLGCSIGPNTFIAV 86 (184)
Q Consensus 69 ~~IADlGCS~G~NSl~~v 86 (184)
-+|.|+||.+|..++.+.
T Consensus 66 grVLDLGcGsGilsl~la 83 (279)
T PHA03411 66 GKVLDLCAGIGRLSFCML 83 (279)
T ss_pred CeEEEcCCCCCHHHHHHH
Confidence 489999999997766553
No 151
>PLN03065 isocitrate dehydrogenase (NADP+); Provisional
Probab=22.83 E-value=1.8e+02 Score=27.76 Aligned_cols=43 Identities=19% Similarity=0.141 Sum_probs=29.1
Q ss_pred HHHHHHHHhhhhhhhccCCCCCceEEEeee-cCCC--------cccHHHHHHHHHHHHHHh
Q 040907 46 ELIYEAISDKLDLKLLKFDASNTFQIADLG-CSIG--------PNTFIAVQNIIEAVELKL 97 (184)
Q Consensus 46 p~l~~ai~~~~~~~~~~~~~~~~~~IADlG-CS~G--------~NSl~~v~~iI~~i~~~~ 97 (184)
..|++||.+.+. .. +.-.||| |..| .+|-.+++.|++.|+++.
T Consensus 426 ~~Le~Av~~tie--------~G-~~T~DLg~~~~G~~~~~~~~~~T~ef~daV~~~L~~~~ 477 (483)
T PLN03065 426 HKLESACIETVE--------SG-KMTKDLAILIHGPKVSREFYLNTEEFIDAVAQTLATKR 477 (483)
T ss_pred HHHHHHHHHHHH--------cC-CcccccccccCCCcccCCCCcCHHHHHHHHHHHHHHHh
Confidence 356666665442 12 3356996 6656 579999999999998764
No 152
>cd00491 4Oxalocrotonate_Tautomerase 4-Oxalocrotonate Tautomerase: Catalyzes the isomerization of unsaturated ketones. The structure is a homohexamer that is arranged as a trimer of dimers. The hexamer contains six active sites, each formed by residues from three monomers, two from one dimer and the third from a neighboring monomer. Each monomer is a beta-alpha-beta fold with two small beta strands at the C-terminus that fold back on themselves. A pair of monomers form a dimer with two-fold symmetry, consisting of a 4-stranded beta sheet with two helices on one side and two additional small beta strands at each end. The dimers are assembled around a 3-fold axis of rotation to form a hexamer, with the short beta strands from each dimer contacting the neighboring dimers.
Probab=22.56 E-value=1.9e+02 Score=18.16 Aligned_cols=44 Identities=14% Similarity=0.095 Sum_probs=28.0
Q ss_pred cCCCcccHHHHHHHHHHHHHHhcCCCCCCCCCcceEEEeCCCCCCch
Q 040907 76 CSIGPNTFIAVQNIIEAVELKLLQPDHQNISSIEFQVLFNDHYDNDF 122 (184)
Q Consensus 76 CS~G~NSl~~v~~iI~~i~~~~~~~~~~~~~~pe~qv~~nDLP~NDF 122 (184)
+..|+ +-..-.+++++|.+......+ .++..+.|.++|.|..||
T Consensus 7 ~~~gr-t~eqk~~l~~~i~~~l~~~~g--~~~~~v~V~i~e~~~~~~ 50 (58)
T cd00491 7 ILEGR-TDEQKRELIERVTEAVSEILG--APEATIVVIIDEMPKENW 50 (58)
T ss_pred EcCCC-CHHHHHHHHHHHHHHHHHHhC--cCcccEEEEEEEeCchhc
Confidence 34577 477777777777665433211 234468899999987765
No 153
>PRK00811 spermidine synthase; Provisional
Probab=22.13 E-value=1.2e+02 Score=26.26 Aligned_cols=22 Identities=14% Similarity=0.098 Sum_probs=17.5
Q ss_pred CCceEEEeeecCCCcccHHHHH
Q 040907 66 SNTFQIADLGCSIGPNTFIAVQ 87 (184)
Q Consensus 66 ~~~~~IADlGCS~G~NSl~~v~ 87 (184)
+++-+|.|+||..|..+..++.
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~ 96 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLK 96 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHc
Confidence 4456899999999988876654
No 154
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=22.02 E-value=55 Score=30.04 Aligned_cols=21 Identities=29% Similarity=0.406 Sum_probs=17.0
Q ss_pred CceEEEeeecCCCcccHHHHH
Q 040907 67 NTFQIADLGCSIGPNTFIAVQ 87 (184)
Q Consensus 67 ~~~~IADlGCS~G~NSl~~v~ 87 (184)
.-.++.|+|||.|.-|-.++.
T Consensus 211 ~g~~vlDLGAsPGGWT~~L~~ 231 (357)
T PRK11760 211 PGMRAVDLGAAPGGWTYQLVR 231 (357)
T ss_pred CCCEEEEeCCCCcHHHHHHHH
Confidence 457899999999999866643
No 155
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=21.40 E-value=50 Score=28.91 Aligned_cols=22 Identities=27% Similarity=0.425 Sum_probs=18.9
Q ss_pred cCCCccceeeeccccccccCCC
Q 040907 149 FPKATLHFVHSSYSLHWLSKVP 170 (184)
Q Consensus 149 fP~~Svh~~~Ss~aLHWLS~vP 170 (184)
|++.+.|=++|-.|++||=..-
T Consensus 108 frpGtFDg~ISISAvQWLcnA~ 129 (270)
T KOG1541|consen 108 FRPGTFDGVISISAVQWLCNAD 129 (270)
T ss_pred CCCCccceEEEeeeeeeecccC
Confidence 7888999999999999996543
No 156
>PRK04457 spermidine synthase; Provisional
Probab=20.70 E-value=2e+02 Score=24.52 Aligned_cols=20 Identities=15% Similarity=0.117 Sum_probs=15.3
Q ss_pred CceEEEeeecCCCcccHHHH
Q 040907 67 NTFQIADLGCSIGPNTFIAV 86 (184)
Q Consensus 67 ~~~~IADlGCS~G~NSl~~v 86 (184)
.+-+|.|+||..|.-+..+.
T Consensus 66 ~~~~vL~IG~G~G~l~~~l~ 85 (262)
T PRK04457 66 RPQHILQIGLGGGSLAKFIY 85 (262)
T ss_pred CCCEEEEECCCHhHHHHHHH
Confidence 34579999999998776553
No 157
>TIGR00987 himA integration host factor, alpha subunit. This protein forms a site-specific DNA-binding heterodimer with the integration host factor beta subunit. It is closely related to the DNA-binding protein HU.
Probab=20.61 E-value=1.5e+02 Score=21.26 Aligned_cols=36 Identities=22% Similarity=0.384 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhccCCCCCceEEEeeecCC
Q 040907 36 LQRRVVDAAKELIYEAISDKLDLKLLKFDASNTFQIADLGCSI 78 (184)
Q Consensus 36 ~Q~~~i~~~~p~l~~ai~~~~~~~~~~~~~~~~~~IADlGCS~ 78 (184)
+.+..+..+...+.++|.+.+. ....+.|.+||--.
T Consensus 17 ~s~~~v~~vv~~~~~~i~~~L~-------~g~~V~l~gfG~F~ 52 (96)
T TIGR00987 17 LSKREAKELVELFFEEIRRALE-------NGEQVKLSGFGNFD 52 (96)
T ss_pred cCHHHHHHHHHHHHHHHHHHHH-------cCCeEEecCCEEEE
Confidence 3344445555555556655332 35679999999653
No 158
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=20.21 E-value=51 Score=29.09 Aligned_cols=14 Identities=36% Similarity=0.695 Sum_probs=11.4
Q ss_pred EEEeeecCCCcccH
Q 040907 70 QIADLGCSIGPNTF 83 (184)
Q Consensus 70 ~IADlGCS~G~NSl 83 (184)
++.||||.+|-.--
T Consensus 128 ~~lDLGCGTGL~G~ 141 (287)
T COG4976 128 RMLDLGCGTGLTGE 141 (287)
T ss_pred eeeecccCcCcccH
Confidence 48999999997643
No 159
>smart00400 ZnF_CHCC zinc finger.
Probab=20.07 E-value=90 Score=20.14 Aligned_cols=19 Identities=21% Similarity=0.410 Sum_probs=15.2
Q ss_pred EEeeecCCCcccHHHHHHH
Q 040907 71 IADLGCSIGPNTFIAVQNI 89 (184)
Q Consensus 71 IADlGCS~G~NSl~~v~~i 89 (184)
.=++||..|.+.|.++..+
T Consensus 24 ~~Cf~cg~gGd~i~fv~~~ 42 (55)
T smart00400 24 FHCFGCGAGGNVISFLMKY 42 (55)
T ss_pred EEEeCCCCCCCHHHHHHHH
Confidence 4579999999988877655
Done!