BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040909
(98 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9C912|R35A3_ARATH 60S ribosomal protein L35a-3 OS=Arabidopsis thaliana GN=RPL35AC
PE=3 SV=1
Length = 112
Score = 169 bits (429), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 84/112 (75%), Positives = 92/112 (82%), Gaps = 14/112 (12%)
Query: 1 MVKGRQGERIKLYVRGTILGYKRSKSNQYPNTSLIQIKGVNIKEE--------------A 46
MVKGRQGER++LYVRGTILGYKRSKSNQYPNTSL+QI+GVN +EE A
Sbjct: 1 MVKGRQGERVRLYVRGTILGYKRSKSNQYPNTSLVQIEGVNTQEEVNWYKGKRMAYIYKA 60
Query: 47 KTKKNGTHYRCIWGKVARSHSNSGVVRAKFKSNLPPKSVGDRVRVFMYPNNI 98
KTKKNG+HYRCIWGKV R H NSGVVRAKF SNLPPKS+G RVRVFMYP+NI
Sbjct: 61 KTKKNGSHYRCIWGKVTRPHGNSGVVRAKFTSNLPPKSMGSRVRVFMYPSNI 112
>sp|Q9LMK0|R35A1_ARATH 60S ribosomal protein L35a-1 OS=Arabidopsis thaliana GN=RPL35AA
PE=3 SV=1
Length = 112
Score = 169 bits (427), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 83/112 (74%), Positives = 91/112 (81%), Gaps = 14/112 (12%)
Query: 1 MVKGRQGERIKLYVRGTILGYKRSKSNQYPNTSLIQIKGVNIKEE--------------A 46
MVKGRQGER++LYVRGTILGYKRSKSNQYPNTSL+Q++GVN EE A
Sbjct: 1 MVKGRQGERVRLYVRGTILGYKRSKSNQYPNTSLVQVEGVNTTEEVSWYKGKRMAYIYKA 60
Query: 47 KTKKNGTHYRCIWGKVARSHSNSGVVRAKFKSNLPPKSVGDRVRVFMYPNNI 98
KTKKNG+HYRCIWGKV R H NSGVVRAKF SNLPPKS+G RVRVFMYP+NI
Sbjct: 61 KTKKNGSHYRCIWGKVTRPHGNSGVVRAKFTSNLPPKSMGSRVRVFMYPSNI 112
>sp|Q9FZH0|R35A2_ARATH 60S ribosomal protein L35a-2 OS=Arabidopsis thaliana GN=RPL35AB
PE=3 SV=1
Length = 111
Score = 164 bits (415), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 81/111 (72%), Positives = 91/111 (81%), Gaps = 14/111 (12%)
Query: 2 VKGRQGERIKLYVRGTILGYKRSKSNQYPNTSLIQIKGVNIKEE--------------AK 47
+KGRQGER++LYVRGT+LGYKRSKSNQYPNTSLIQI+GVN +EE AK
Sbjct: 1 MKGRQGERVRLYVRGTVLGYKRSKSNQYPNTSLIQIEGVNTQEEVNWYKGKRLAYIYKAK 60
Query: 48 TKKNGTHYRCIWGKVARSHSNSGVVRAKFKSNLPPKSVGDRVRVFMYPNNI 98
TKKNG+HYRCIWGKV R H NSGVVR+KF SNLPPKS+G RVRVFMYP+NI
Sbjct: 61 TKKNGSHYRCIWGKVTRPHGNSGVVRSKFTSNLPPKSMGARVRVFMYPSNI 111
>sp|P51422|R35A4_ARATH 60S ribosomal protein L35a-4 OS=Arabidopsis thaliana GN=RPL35AD
PE=3 SV=2
Length = 111
Score = 164 bits (414), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 80/111 (72%), Positives = 91/111 (81%), Gaps = 14/111 (12%)
Query: 2 VKGRQGERIKLYVRGTILGYKRSKSNQYPNTSLIQIKGVNIKEE--------------AK 47
+KGRQGER++LYVRGT+LGYKRSKSNQYPNTSL+QI+GVN +EE AK
Sbjct: 1 MKGRQGERVRLYVRGTVLGYKRSKSNQYPNTSLVQIEGVNTQEEVNWYKGKRLAYIYKAK 60
Query: 48 TKKNGTHYRCIWGKVARSHSNSGVVRAKFKSNLPPKSVGDRVRVFMYPNNI 98
TKKNG+HYRCIWGKV R H NSGVVR+KF SNLPPKS+G RVRVFMYP+NI
Sbjct: 61 TKKNGSHYRCIWGKVTRPHGNSGVVRSKFTSNLPPKSMGARVRVFMYPSNI 111
>sp|Q55BN7|RL35A_DICDI 60S ribosomal protein L35a OS=Dictyostelium discoideum GN=rpl35a
PE=3 SV=1
Length = 105
Score = 96.7 bits (239), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 46/103 (44%), Positives = 70/103 (67%), Gaps = 15/103 (14%)
Query: 11 KLYVRGTILGYKRSKSNQYPNTSLIQIKGVNIKEEA---------------KTKKNGTHY 55
K+Y +G +LGY+RS++ QYPN SLI+I+GV +E++ K+ KN T +
Sbjct: 3 KIYSKGVVLGYRRSQATQYPNISLIKIEGVVSREDSTFYLGKKVCLVSKVSKSAKNPTGH 62
Query: 56 RCIWGKVARSHSNSGVVRAKFKSNLPPKSVGDRVRVFMYPNNI 98
+ WGK+ ++H +SGVV+A+F NLPPK++G VRV +YP+NI
Sbjct: 63 KISWGKICKTHGSSGVVQARFARNLPPKAMGAPVRVMLYPSNI 105
>sp|P41056|RL33B_YEAST 60S ribosomal protein L33-B OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=RPL33B PE=1 SV=2
Length = 107
Score = 91.3 bits (225), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 48/106 (45%), Positives = 65/106 (61%), Gaps = 14/106 (13%)
Query: 7 GERIKLYVRGTILGYKRSKSNQYPNTSLIQIKGVNIKEEAK--------------TKKNG 52
E +LYV+G L Y+RSK PN SLI+I+GV +EA+ + G
Sbjct: 2 AESHRLYVKGKHLSYQRSKRVNNPNVSLIKIEGVATPQEAQFYLGKRIAYVYRASKEVRG 61
Query: 53 THYRCIWGKVARSHSNSGVVRAKFKSNLPPKSVGDRVRVFMYPNNI 98
+ R +WGKV R+H NSGVVRA F++NLP K+ G VR+F+YP+NI
Sbjct: 62 SKIRVMWGKVTRTHGNSGVVRATFRNNLPAKTFGASVRIFLYPSNI 107
>sp|P05744|RL33A_YEAST 60S ribosomal protein L33-A OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=RPL33A PE=1 SV=3
Length = 107
Score = 89.7 bits (221), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 47/106 (44%), Positives = 65/106 (61%), Gaps = 14/106 (13%)
Query: 7 GERIKLYVRGTILGYKRSKSNQYPNTSLIQIKGVNIKEEAK--------------TKKNG 52
E +LYV+G L Y+RSK PN SLI+I+GV ++A+ + G
Sbjct: 2 AESHRLYVKGKHLSYQRSKRVNNPNVSLIKIEGVATPQDAQFYLGKRIAYVYRASKEVRG 61
Query: 53 THYRCIWGKVARSHSNSGVVRAKFKSNLPPKSVGDRVRVFMYPNNI 98
+ R +WGKV R+H NSGVVRA F++NLP K+ G VR+F+YP+NI
Sbjct: 62 SKIRVMWGKVTRTHGNSGVVRATFRNNLPAKTFGASVRIFLYPSNI 107
>sp|Q9USX4|RL33A_SCHPO 60S ribosomal protein L33-A OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=rpl33a PE=3 SV=2
Length = 108
Score = 88.2 bits (217), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 49/107 (45%), Positives = 66/107 (61%), Gaps = 16/107 (14%)
Query: 6 QGERIKLYVRGTILGYKRSKSNQYPNTSLIQIKGVNIKEEAKT----------KKN---- 51
QG R LYV+ L ++RSK +P TSL++I+G + KEEA+ K N
Sbjct: 4 QGHR--LYVKAKHLSFQRSKHVIHPGTSLVKIEGCDSKEEAQFYLGKRICFVYKSNKPVR 61
Query: 52 GTHYRCIWGKVARSHSNSGVVRAKFKSNLPPKSVGDRVRVFMYPNNI 98
G+ R IWG V+R H NSGVVRA+F NLPPK+ G +RV +YP+N+
Sbjct: 62 GSKIRVIWGTVSRPHGNSGVVRARFTHNLPPKTFGASLRVMLYPSNV 108
>sp|P0DJ22|RL35A_TETTS 60S ribosomal protein L35a OS=Tetrahymena thermophila (strain
SB210) GN=RPL35A PE=1 SV=1
Length = 113
Score = 85.9 bits (211), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 38/99 (38%), Positives = 62/99 (62%), Gaps = 13/99 (13%)
Query: 11 KLYVRGTILGYKRSKSNQYPNTSLIQIKGVNIKEEAK-------------TKKNGTHYRC 57
+L+V+ G++RSK Q N +L++++ VN KE+ KKNG++YR
Sbjct: 13 RLWVKAAFTGFRRSKHTQNSNQALLKLQNVNTKEDVAFYQGKRVVYIYKGQKKNGSNYRT 72
Query: 58 IWGKVARSHSNSGVVRAKFKSNLPPKSVGDRVRVFMYPN 96
IWG++ ++H N+GV A+F NLPP+++G +RV +YPN
Sbjct: 73 IWGRIGKAHGNNGVAVARFAHNLPPQAIGSVLRVMLYPN 111
>sp|P49180|RL35A_CAEEL 60S ribosomal protein L35a OS=Caenorhabditis elegans GN=rpl-33 PE=1
SV=3
Length = 124
Score = 85.5 bits (210), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 45/108 (41%), Positives = 62/108 (57%), Gaps = 20/108 (18%)
Query: 11 KLYVRGTILGYKRSKSNQYPNTSLIQIKGVNIKEEA----------------KTKKNG-- 52
+LYV+ G+KR Q +TSL++++GV KE+A KT K G
Sbjct: 17 RLYVKAIFTGFKRGLRTQSEHTSLLKLEGVFNKEDAGFYAGKRVVYLYKAHNKTLKTGHT 76
Query: 53 --THYRCIWGKVARSHSNSGVVRAKFKSNLPPKSVGDRVRVFMYPNNI 98
T R IWGK+ R H N+G VRAKF N+PP ++G R+RV +YP+NI
Sbjct: 77 VATRTRAIWGKITRPHGNAGAVRAKFHHNIPPSALGKRIRVLLYPSNI 124
>sp|P02434|RL35A_XENLA 60S ribosomal protein L35a OS=Xenopus laevis GN=rpl35a PE=3 SV=2
Length = 110
Score = 84.3 bits (207), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 45/107 (42%), Positives = 64/107 (59%), Gaps = 19/107 (17%)
Query: 11 KLYVRGTILGYKRSKSNQYPNTSLIQIKGVNIKEEAK-----------TKKNGT------ 53
+L+ + T GYKR NQ +T+L++I+GV ++E + KN T
Sbjct: 4 RLWCKATFAGYKRGLRNQREHTALLKIEGVYARDETEFYFGKRCAYVYKAKNNTVTPGGK 63
Query: 54 --HYRCIWGKVARSHSNSGVVRAKFKSNLPPKSVGDRVRVFMYPNNI 98
R IWGKV R+H NSG+VRAKF+SNLP K++G R+RV +YP+ I
Sbjct: 64 PNRTRVIWGKVTRAHGNSGMVRAKFRSNLPAKAIGHRIRVMLYPSRI 110
>sp|Q9USG6|RL33B_SCHPO 60S ribosomal protein L33-B OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=rpl33b PE=1 SV=1
Length = 108
Score = 83.6 bits (205), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 47/107 (43%), Positives = 64/107 (59%), Gaps = 16/107 (14%)
Query: 6 QGERIKLYVRGTILGYKRSKSNQYPNTSLIQIKGVNIKEEA------------KTKK--N 51
QG R LYV+ L ++RSK +P TS+++I+G + KEEA K+ K
Sbjct: 4 QGHR--LYVKAKHLSFQRSKHVIHPGTSIVKIEGCDSKEEAQFYLGKRVCYVYKSSKAVR 61
Query: 52 GTHYRCIWGKVARSHSNSGVVRAKFKSNLPPKSVGDRVRVFMYPNNI 98
G+ R IWG +AR H NSG VRA+F NLP K+ G +RV +YP+NI
Sbjct: 62 GSKIRVIWGTIARPHGNSGAVRARFVHNLPAKTFGSSLRVMLYPSNI 108
>sp|P04646|RL35A_RAT 60S ribosomal protein L35a OS=Rattus norvegicus GN=Rpl35a PE=3 SV=1
Length = 110
Score = 82.0 bits (201), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 44/107 (41%), Positives = 63/107 (58%), Gaps = 19/107 (17%)
Query: 11 KLYVRGTILGYKRSKSNQYPNTSLIQIKGVNIKEEAK-----------TKKNGT------ 53
+L+ + GYKR NQ +T+L++I+GV ++E + KN T
Sbjct: 4 RLWCKAIFAGYKRGLRNQREHTALLKIEGVYARDETEFYLGKRCAYVYKAKNNTVTPGGK 63
Query: 54 --HYRCIWGKVARSHSNSGVVRAKFKSNLPPKSVGDRVRVFMYPNNI 98
R IWGKV R+H NSG+VRAKF+SNLP K++G R+RV +YP+ I
Sbjct: 64 PNKTRVIWGKVTRAHGNSGMVRAKFRSNLPAKAIGHRIRVMLYPSRI 110
>sp|O55142|RL35A_MOUSE 60S ribosomal protein L35a OS=Mus musculus GN=Rpl35a PE=2 SV=2
Length = 110
Score = 82.0 bits (201), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 44/107 (41%), Positives = 63/107 (58%), Gaps = 19/107 (17%)
Query: 11 KLYVRGTILGYKRSKSNQYPNTSLIQIKGVNIKEEAK-----------TKKNGT------ 53
+L+ + GYKR NQ +T+L++I+GV ++E + KN T
Sbjct: 4 RLWCKAIFAGYKRGLRNQREHTALLKIEGVYARDETEFYLGKRCAYVYKAKNNTVTPGGK 63
Query: 54 --HYRCIWGKVARSHSNSGVVRAKFKSNLPPKSVGDRVRVFMYPNNI 98
R IWGKV R+H NSG+VRAKF+SNLP K++G R+RV +YP+ I
Sbjct: 64 PNKTRVIWGKVTRAHGNSGMVRAKFRSNLPAKAIGHRIRVMLYPSRI 110
>sp|Q5R8K6|RL35A_PONAB 60S ribosomal protein L35a OS=Pongo abelii GN=RPL35A PE=3 SV=1
Length = 110
Score = 81.6 bits (200), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 44/107 (41%), Positives = 63/107 (58%), Gaps = 19/107 (17%)
Query: 11 KLYVRGTILGYKRSKSNQYPNTSLIQIKGVNIKEEAK-----------TKKNGT------ 53
+L+ + GYKR NQ +T+L++I+GV ++E + KN T
Sbjct: 4 RLWSKAIFAGYKRGLRNQREHTALLKIEGVYARDETEFYLGKRCAYVYKAKNNTVTPGGK 63
Query: 54 --HYRCIWGKVARSHSNSGVVRAKFKSNLPPKSVGDRVRVFMYPNNI 98
R IWGKV R+H NSG+VRAKF+SNLP K++G R+RV +YP+ I
Sbjct: 64 PNKTRVIWGKVTRAHGNSGMVRAKFRSNLPAKAIGHRIRVMLYPSRI 110
>sp|P61272|RL35A_MACFA 60S ribosomal protein L35a OS=Macaca fascicularis GN=RPL35A PE=3
SV=1
Length = 110
Score = 81.6 bits (200), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 44/107 (41%), Positives = 63/107 (58%), Gaps = 19/107 (17%)
Query: 11 KLYVRGTILGYKRSKSNQYPNTSLIQIKGVNIKEEAK-----------TKKNGT------ 53
+L+ + GYKR NQ +T+L++I+GV ++E + KN T
Sbjct: 4 RLWSKAIFAGYKRGLRNQREHTALLKIEGVYARDETEFYLGKRCAYVYKAKNNTVTPGGK 63
Query: 54 --HYRCIWGKVARSHSNSGVVRAKFKSNLPPKSVGDRVRVFMYPNNI 98
R IWGKV R+H NSG+VRAKF+SNLP K++G R+RV +YP+ I
Sbjct: 64 PNKTRVIWGKVTRAHGNSGMVRAKFRSNLPAKAIGHRIRVMLYPSRI 110
>sp|P18077|RL35A_HUMAN 60S ribosomal protein L35a OS=Homo sapiens GN=RPL35A PE=1 SV=2
Length = 110
Score = 81.6 bits (200), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 44/107 (41%), Positives = 63/107 (58%), Gaps = 19/107 (17%)
Query: 11 KLYVRGTILGYKRSKSNQYPNTSLIQIKGVNIKEEAK-----------TKKNGT------ 53
+L+ + GYKR NQ +T+L++I+GV ++E + KN T
Sbjct: 4 RLWSKAIFAGYKRGLRNQREHTALLKIEGVYARDETEFYLGKRCAYVYKAKNNTVTPGGK 63
Query: 54 --HYRCIWGKVARSHSNSGVVRAKFKSNLPPKSVGDRVRVFMYPNNI 98
R IWGKV R+H NSG+VRAKF+SNLP K++G R+RV +YP+ I
Sbjct: 64 PNKTRVIWGKVTRAHGNSGMVRAKFRSNLPAKAIGHRIRVMLYPSRI 110
>sp|Q56JY1|RL35A_BOVIN 60S ribosomal protein L35a OS=Bos taurus GN=RPL35A PE=2 SV=1
Length = 110
Score = 81.3 bits (199), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 43/107 (40%), Positives = 63/107 (58%), Gaps = 19/107 (17%)
Query: 11 KLYVRGTILGYKRSKSNQYPNTSLIQIKGVNIKEEAK-----------TKKNGT------ 53
+L+ + GYKR NQ +T+L++I+GV ++E + KN T
Sbjct: 4 RLWSKAIFAGYKRGLRNQREHTALLKIEGVYARDETEFYLGKRCAYVYKAKNNTVTPGGK 63
Query: 54 --HYRCIWGKVARSHSNSGVVRAKFKSNLPPKSVGDRVRVFMYPNNI 98
R IWGK+ R+H NSG+VRAKF+SNLP K++G R+RV +YP+ I
Sbjct: 64 PNKTRVIWGKITRAHGNSGMVRAKFRSNLPAKAIGHRIRVMLYPSRI 110
>sp|Q90YT3|RL35A_ICTPU 60S ribosomal protein L35a OS=Ictalurus punctatus GN=rpl35a PE=3
SV=1
Length = 110
Score = 80.1 bits (196), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 43/107 (40%), Positives = 61/107 (57%), Gaps = 19/107 (17%)
Query: 11 KLYVRGTILGYKRSKSNQYPNTSLIQIKGVNIKEEA------------KTKKNGT----- 53
+L+ + GYKR NQ +T+L++++GV + E K KK
Sbjct: 4 RLWCKAIFAGYKRGLRNQREHTALLKVEGVYSRNEVDFYLGKRCAYVYKAKKTTVTPGGK 63
Query: 54 --HYRCIWGKVARSHSNSGVVRAKFKSNLPPKSVGDRVRVFMYPNNI 98
R IWGKV R+H NSG+VRAKF SNLPPK++G R+RV +YP+ +
Sbjct: 64 PNKTRVIWGKVTRAHGNSGMVRAKFTSNLPPKAIGHRIRVMLYPSRV 110
>sp|Q9V1P2|RL35A_PYRAB 50S ribosomal protein L35Ae OS=Pyrococcus abyssi (strain GE5 /
Orsay) GN=rpl35ae PE=3 SV=1
Length = 87
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 50/90 (55%), Gaps = 12/90 (13%)
Query: 12 LYVRGTILGYKRSKSNQYPNTSLIQIKGVNIKEEAKTKKNGTHYRCIW---------GKV 62
+ ++G +L Y+RSK NQ+ N +I+ VN +EEA +K G IW GK+
Sbjct: 1 MRIKGVVLSYRRSKENQHTNVMIIKPLNVNSREEA-SKLIGR--LVIWKSPSGKLLKGKI 57
Query: 63 ARSHSNSGVVRAKFKSNLPPKSVGDRVRVF 92
R H G VRA+F+ LP +++GD V +
Sbjct: 58 VRVHGTKGAVRARFEKGLPGQALGDYVEII 87
>sp|O74099|RL35A_PYRHO 50S ribosomal protein L35Ae OS=Pyrococcus horikoshii (strain ATCC
700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
GN=rpl35ae PE=3 SV=1
Length = 87
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 50/90 (55%), Gaps = 12/90 (13%)
Query: 12 LYVRGTILGYKRSKSNQYPNTSLIQIKGVNIKEEAKTKKNGTHYRCIW---------GKV 62
+ ++G +L Y+RSK NQ+ N +I+ +N +EEA +K G +W GK+
Sbjct: 1 MRIKGVVLSYRRSKENQHTNVMIIKPLDINSREEA-SKLIGRL--VVWKSPSGKVLKGKI 57
Query: 63 ARSHSNSGVVRAKFKSNLPPKSVGDRVRVF 92
R H G VRA+F+ LP +++GD V +
Sbjct: 58 VRVHGTRGAVRARFEKGLPGQALGDYVEII 87
>sp|P20299|RL35A_PYRWO 50S ribosomal protein L35Ae OS=Pyrococcus woesei GN=rpl35ae PE=3
SV=1
Length = 87
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 50/89 (56%), Gaps = 12/89 (13%)
Query: 12 LYVRGTILGYKRSKSNQYPNTSLIQIKGVNIKEEAKTKKNGTHYRCIW---------GKV 62
+ ++G +L Y+RSK NQ+ N +I+ VN +EEA +K G +W GK+
Sbjct: 1 MSIKGVVLSYRRSKENQHNNVMIIKPLDVNSREEA-SKLIGR--LVLWKSPSGKILKGKI 57
Query: 63 ARSHSNSGVVRAKFKSNLPPKSVGDRVRV 91
R H G VRA+F+ LP +++GD V +
Sbjct: 58 VRVHGTKGAVRARFEKGLPGQALGDYVEI 86
>sp|Q8TZV6|RL35A_PYRFU 50S ribosomal protein L35Ae OS=Pyrococcus furiosus (strain ATCC
43587 / DSM 3638 / JCM 8422 / Vc1) GN=rpl35ae PE=1 SV=1
Length = 87
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 50/89 (56%), Gaps = 12/89 (13%)
Query: 12 LYVRGTILGYKRSKSNQYPNTSLIQIKGVNIKEEAKTKKNGTHYRCIW---------GKV 62
+ ++G +L Y+RSK NQ+ N +I+ VN +EEA +K G +W GK+
Sbjct: 1 MRIKGVVLSYRRSKENQHNNVMIIKPLDVNSREEA-SKLIGR--LVLWKSPSGKILKGKI 57
Query: 63 ARSHSNSGVVRAKFKSNLPPKSVGDRVRV 91
R H G VRA+F+ LP +++GD V +
Sbjct: 58 VRVHGTKGAVRARFEKGLPGQALGDYVEI 86
>sp|Q8TYY6|RL35A_METKA 50S ribosomal protein L35Ae OS=Methanopyrus kandleri (strain AV19
/ DSM 6324 / JCM 9639 / NBRC 100938) GN=rpl35ae PE=3
SV=1
Length = 90
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 42/82 (51%), Gaps = 7/82 (8%)
Query: 15 RGTILGYKRSKSNQYPNTSLIQIKGVNIKEEAKTK-------KNGTHYRCIWGKVARSHS 67
RG I+ Y+ + Q P +I+ +GV + EA K+ + I GKV +H
Sbjct: 6 RGVIVNYRMGRHTQDPRQCIIEFEGVESRSEAAQLIGKEVIWKHPETGKVIRGKVVDTHG 65
Query: 68 NSGVVRAKFKSNLPPKSVGDRV 89
N+G VR +F+ LP +++G V
Sbjct: 66 NNGAVRVRFERGLPGQALGTEV 87
>sp|Q9Y9G4|RL35A_AERPE 50S ribosomal protein L35Ae OS=Aeropyrum pernix (strain ATCC
700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1)
GN=rpl35ae PE=3 SV=2
Length = 94
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 40/83 (48%), Gaps = 6/83 (7%)
Query: 15 RGTILGYKRSKSNQYPNTSLIQIKGVNIKEEAKTKKNGTHYRCIW-----GKVARSHS-N 68
RG +LGY+R + QYP +L+++ + ++ YR + G+V R H
Sbjct: 5 RGVVLGYRRGTNTQYPQHALVKLLLDDPRKAGLYVSGIAFYRDRYGNVYKGRVLRLHGRR 64
Query: 69 SGVVRAKFKSNLPPKSVGDRVRV 91
GVV KF LP ++ G V V
Sbjct: 65 GGVVVVKFNPPLPGQATGGVVEV 87
>sp|Q9UHE5|NAT8_HUMAN Probable N-acetyltransferase 8 OS=Homo sapiens GN=NAT8 PE=1 SV=2
Length = 227
Score = 33.9 bits (76), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 32/72 (44%), Gaps = 8/72 (11%)
Query: 17 TILGYKRSK--SNQYPNTSLIQIKGVNIKEEAKTKKNGTHYRCIWGKVARSHSNSGVVRA 74
T+L + R + S +T IQ+ + + + KK G + C+W ++ H+
Sbjct: 160 TVLQFARDQGYSEVILDTGTIQLSAMALYQSMGFKKTGQSFFCVWARLVALHT------V 213
Query: 75 KFKSNLPPKSVG 86
F +LP VG
Sbjct: 214 HFIYHLPSSKVG 225
>sp|B7INB5|SAT_BACC2 Sulfate adenylyltransferase OS=Bacillus cereus (strain G9842)
GN=sat PE=3 SV=1
Length = 378
Score = 29.6 bits (65), Expect = 5.9, Method: Composition-based stats.
Identities = 17/42 (40%), Positives = 26/42 (61%), Gaps = 3/42 (7%)
Query: 8 ERIKLYVRGTILGYKRSKSNQYPNTSLIQIKGVNIKEEAKTK 49
ER +YV GTI+ KR ++NQ+P+ L I+ +EE K +
Sbjct: 136 ERPNVYVGGTIILTKRFENNQFPSYRLDPIE---TREEFKKR 174
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.134 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,377,904
Number of Sequences: 539616
Number of extensions: 1201412
Number of successful extensions: 2629
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 2580
Number of HSP's gapped (non-prelim): 29
length of query: 98
length of database: 191,569,459
effective HSP length: 67
effective length of query: 31
effective length of database: 155,415,187
effective search space: 4817870797
effective search space used: 4817870797
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)