Query 040909
Match_columns 98
No_of_seqs 102 out of 237
Neff 4.3
Searched_HMMs 29240
Date Mon Mar 25 21:10:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040909.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040909hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3iz5_j 60S ribosomal protein L 100.0 1.1E-55 3.9E-60 309.5 7.5 97 2-98 1-111 (111)
2 3izc_j 60S ribosomal protein R 100.0 6.1E-55 2.1E-59 304.2 4.8 93 6-98 1-107 (107)
3 4a18_H RPL35A; ribosome, eukar 100.0 5.7E-53 1.9E-57 296.6 8.6 90 8-97 10-112 (113)
4 1sqr_A 50S ribosomal protein L 100.0 1.4E-44 4.6E-49 247.7 8.7 82 13-94 2-89 (95)
5 3j21_c 50S ribosomal protein L 100.0 3.3E-42 1.1E-46 232.7 9.6 78 14-91 3-86 (87)
6 3h9n_A Ribosome maturation fac 81.5 1.8 6.1E-05 30.8 4.1 29 56-84 2-30 (177)
7 2dyi_A Probable 16S rRNA-proce 80.3 1.4 4.7E-05 31.0 3.2 22 57-79 4-25 (162)
8 2qgg_A 16S rRNA-processing pro 79.5 2 6.8E-05 30.7 3.9 27 56-82 11-37 (182)
9 2f1l_A 16S rRNA processing pro 78.2 2.8 9.6E-05 30.2 4.4 27 56-82 20-46 (187)
10 3h9n_A Ribosome maturation fac 72.1 5.5 0.00019 28.2 4.5 27 17-48 48-74 (177)
11 2f1l_A 16S rRNA processing pro 70.1 7.8 0.00027 27.9 5.0 28 16-48 65-92 (187)
12 2dyi_A Probable 16S rRNA-proce 69.4 2.6 8.9E-05 29.6 2.3 27 17-48 42-68 (162)
13 1wb1_A Translation elongation 69.0 0.67 2.3E-05 37.2 -1.0 63 28-96 413-480 (482)
14 2qgg_A 16S rRNA-processing pro 67.1 3 0.0001 29.7 2.3 27 17-48 57-83 (182)
15 4gop_A Putative uncharacterize 53.6 26 0.00088 23.3 4.9 39 52-92 18-64 (114)
16 3kdf_A Replication protein A 1 51.7 42 0.0014 22.5 5.8 38 52-91 22-69 (121)
17 3kxt_A Chromatin protein CREN7 46.9 12 0.00042 22.9 2.2 18 62-79 23-40 (56)
18 1xk5_A Snurportin-1; protein-R 29.0 39 0.0013 25.0 2.8 22 63-84 43-64 (204)
19 2lfe_A E3 ubiquitin-protein li 28.2 22 0.00076 25.2 1.3 12 64-75 118-129 (138)
20 2be7_D Aspartate carbamoyltran 23.2 1.7E+02 0.0059 20.7 5.3 47 31-86 54-104 (153)
No 1
>3iz5_j 60S ribosomal protein L35A (L35AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_j
Probab=100.00 E-value=1.1e-55 Score=309.49 Aligned_cols=97 Identities=74% Similarity=1.223 Sum_probs=85.3
Q ss_pred cCCCCCceeceEEEEEEEeeecccCCCCCCeeEEEecCccchHHhh--------------hcCCCceeeEEEeEEEeecC
Q 040909 2 VKGRQGERIKLYVRGTILGYKRSKSNQYPNTSLIQIKGVNIKEEAK--------------TKKNGTHYRCIWGKVARSHS 67 (98)
Q Consensus 2 ~~~~~~~~~Rly~kg~~lgykRg~~~Q~~~~aLlKieGV~~k~~Ak--------------~~~~~~k~RviwGKV~r~HG 67 (98)
|+++.++++|||+||+|+|||||++||+|||||||||||+++|||. ++..++++|+|||||||+||
T Consensus 1 ~~~~~~~~~rly~Kgv~lgYkRg~~nQ~~~taLlKIeGV~~~~~a~fylGKrvayvykak~~~~g~k~R~iwGKVtR~HG 80 (111)
T 3iz5_j 1 MKGRQGQRVRLYVRGTILGYKRSKSNQYENTSLLQIEGVNTKEEVGWYAGKRIAYVYKAKTKSNDSTIRCIWGKVTRPHG 80 (111)
T ss_dssp CCCSCCCCCCCCCCEEEEEEECCCSTTCCCEEEEEESSCSTTHHHHTTSCCCCEECCCCCSSSCCCCSCCEECEEEEESS
T ss_pred CCcccCCCceeEEEEEEEecccccCCCCCCeEEEEEcCcCCHHHHHhhcCcEEEEEEeccccCCCceEEEEEEEEEeeeC
Confidence 6899999999999999999999999999999999999999999964 33457899999999999999
Q ss_pred CCceEEEEeCCCCCccCCCCeEEEEEeecCC
Q 040909 68 NSGVVRAKFKSNLPPKSVGDRVRVFMYPNNI 98 (98)
Q Consensus 68 nsGvVrAkF~~nLPp~AiG~~VrVmLyps~i 98 (98)
|||+|||+|++||||||||++||||||||+|
T Consensus 81 nsGvVrAkF~~nLP~kA~G~~VrVmLyps~i 111 (111)
T 3iz5_j 81 NSGVVRAKFRSNLPPTSMGKKVRVFMYPSSI 111 (111)
T ss_dssp SSSCEEEECSSCCSTTCCSSCBCC-------
T ss_pred CCCEEEEEeCCCCChHHcCCEEEEEEecCCC
Confidence 9999999999999999999999999999997
No 2
>3izc_j 60S ribosomal protein RPL33 (L35AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_j 3u5e_f 3u5i_f 4b6a_f
Probab=100.00 E-value=6.1e-55 Score=304.17 Aligned_cols=93 Identities=51% Similarity=0.918 Sum_probs=81.1
Q ss_pred CCceeceEEEEEEEeeecccCCCCCCeeEEEecCccchHHhh--------------hcCCCceeeEEEeEEEeecCCCce
Q 040909 6 QGERIKLYVRGTILGYKRSKSNQYPNTSLIQIKGVNIKEEAK--------------TKKNGTHYRCIWGKVARSHSNSGV 71 (98)
Q Consensus 6 ~~~~~Rly~kg~~lgykRg~~~Q~~~~aLlKieGV~~k~~Ak--------------~~~~~~k~RviwGKV~r~HGnsGv 71 (98)
|.++.|||+||+|+|||||++||+|||||||||||+++|||. ++++++++|+|||||||+|||||+
T Consensus 1 ~~~~~rly~Kgv~lgYkRg~~nQ~~~taLlKIeGV~~~~~a~fylGKrvayvykak~~~~g~k~RviwGKVtR~HGnsGv 80 (107)
T 3izc_j 1 MAESHRLYVKGKHLSYQRSKRVNNPNVSLIKIEGVATPQDAQFYLGKRIAYVYRASKEVRGSKIRVMWGKVTRTHGNSGV 80 (107)
T ss_dssp CCSSCCCCCCEEEEEEECCCSTTCCCEEEEEESSCSTTHHHHTTCCCCCCCCCCCCSSSCCCCSCCCCCCEEECSSSSSC
T ss_pred CCCCceeEEEEEEEecccccCCCCCCeEEEEEcCcCCHHHHHhhcCCEEEEEEecCcccCCceEEEEEEEEEeeeCCCCe
Confidence 567899999999999999999999999999999999999954 334588999999999999999999
Q ss_pred EEEEeCCCCCccCCCCeEEEEEeecCC
Q 040909 72 VRAKFKSNLPPKSVGDRVRVFMYPNNI 98 (98)
Q Consensus 72 VrAkF~~nLPp~AiG~~VrVmLyps~i 98 (98)
|||+|++||||||||++||||||||+|
T Consensus 81 VrAkF~~nLP~kA~G~~VrVmLyps~i 107 (107)
T 3izc_j 81 VRATFRNNLPAKTFGASVRIFLYPSNI 107 (107)
T ss_dssp EEECCCSCCSTTCCSSCBCC-------
T ss_pred EEEEeCCCCChHHcCCeEEEEEecCCC
Confidence 999999999999999999999999997
No 3
>4a18_H RPL35A; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_H 4a1b_H 4a1d_H
Probab=100.00 E-value=5.7e-53 Score=296.55 Aligned_cols=90 Identities=41% Similarity=0.865 Sum_probs=85.1
Q ss_pred ceeceEEEEEEEeeecccCCCCCCeeEEEecCccchHHhhhc-------------CCCceeeEEEeEEEeecCCCceEEE
Q 040909 8 ERIKLYVRGTILGYKRSKSNQYPNTSLIQIKGVNIKEEAKTK-------------KNGTHYRCIWGKVARSHSNSGVVRA 74 (98)
Q Consensus 8 ~~~Rly~kg~~lgykRg~~~Q~~~~aLlKieGV~~k~~Ak~~-------------~~~~k~RviwGKV~r~HGnsGvVrA 74 (98)
+++|||+||+|+|||||++||+|||||||||||+++|||... ..++++|+|||||||+|||||+|||
T Consensus 10 ~~~rly~Kgv~lgYkRg~~nQ~~~taLlKIeGV~~~~~a~fylGKrvayvykak~~~g~k~RviwGKVtR~HGnsGvVrA 89 (113)
T 4a18_H 10 APTRLWVKAAFTGFRRSKHTQNSNQALLKLQNVNTKEDVAFYQGKRVVYIYKGQKKNGSNYRTIWGRIGKAHGNNGVAVA 89 (113)
T ss_dssp CSCCCCEEEEEEEEEEETTEEEEEEEEEEETTCCSHHHHHTTTTCEEEEEEEEEEETTEEEEEEEEEEEEEETTTTEEEE
T ss_pred ccceeEEEEEEEecccccCCCCCCeEEEEEcCcCCHHHHHhhcCCeEEEEEecCCCCCCeEEEEEEEEEeeeCCCCeEEE
Confidence 779999999999999999999999999999999999996532 1578999999999999999999999
Q ss_pred EeCCCCCccCCCCeEEEEEeecC
Q 040909 75 KFKSNLPPKSVGDRVRVFMYPNN 97 (98)
Q Consensus 75 kF~~nLPp~AiG~~VrVmLyps~ 97 (98)
+|++||||||||++||||||||+
T Consensus 90 kF~~nLP~kA~G~~VrVmLyPs~ 112 (113)
T 4a18_H 90 RFAHNLPPQAIGSVLRVMLYPNR 112 (113)
T ss_dssp EESSCCCGGGGGSEEEEECCCCC
T ss_pred EeCCCCChHHcCCeEEEEEecCC
Confidence 99999999999999999999997
No 4
>1sqr_A 50S ribosomal protein L35AE; PFR48, structure, autostructure, northeast structural genomics consortium, beta-barrel; NMR {Pyrococcus furiosus} SCOP: b.43.3.3 PDB: 2lp6_A
Probab=100.00 E-value=1.4e-44 Score=247.67 Aligned_cols=82 Identities=35% Similarity=0.576 Sum_probs=73.7
Q ss_pred EEEEEEEeeecccCCCCCCeeEEEecCccchHHhhhcCCC------ceeeEEEeEEEeecCCCceEEEEeCCCCCccCCC
Q 040909 13 YVRGTILGYKRSKSNQYPNTSLIQIKGVNIKEEAKTKKNG------THYRCIWGKVARSHSNSGVVRAKFKSNLPPKSVG 86 (98)
Q Consensus 13 y~kg~~lgykRg~~~Q~~~~aLlKieGV~~k~~Ak~~~~~------~k~RviwGKV~r~HGnsGvVrAkF~~nLPp~AiG 86 (98)
|+||+|+|||||++||+|||||||||||+++|||+...+. ...|+|||||||||||||+|||+|++||||||||
T Consensus 2 ~~Kgv~lgYkRg~~nQ~~~~aLlkIegV~~k~~a~fYlGKrvayvyka~rviwGKVtR~HGnsGvVrAkF~~nLP~kA~G 81 (95)
T 1sqr_A 2 RIKGVVLSYRRSKENQHNNVMIIKPLDVNSREEASKLIGRLVLWKSPSGKILKGKIVRVHGTKGAVRARFEKGLPGQALG 81 (95)
T ss_dssp CCEEEEEEEECCSSSSSCCEEEEEESCCCCHHHHHHHTTCEEEECCSTTCCEEEEEEEESSSSSCEEEECSSCCSSSCTT
T ss_pred eeeEEEEeeccccCcCCCceEEEEEcCCCCHHHHHhhcCCeEEEEECCCCEEEEEEEeeeCCCCEEEEEeCCCCChHHcC
Confidence 7899999999999999999999999999999998864321 1229999999999999999999999999999999
Q ss_pred CeEEEEEe
Q 040909 87 DRVRVFMY 94 (98)
Q Consensus 87 ~~VrVmLy 94 (98)
++|||||-
T Consensus 82 ~~VrVml~ 89 (95)
T 1sqr_A 82 DYVEIVLE 89 (95)
T ss_dssp CEEECC--
T ss_pred CEEEEEEe
Confidence 99999984
No 5
>3j21_c 50S ribosomal protein L35AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus} PDB: 1sqr_A 2lp6_A
Probab=100.00 E-value=3.3e-42 Score=232.70 Aligned_cols=78 Identities=37% Similarity=0.618 Sum_probs=71.7
Q ss_pred EEEEEEeeecccCCCCCCeeEEEecCccchHHhhhcCC------CceeeEEEeEEEeecCCCceEEEEeCCCCCccCCCC
Q 040909 14 VRGTILGYKRSKSNQYPNTSLIQIKGVNIKEEAKTKKN------GTHYRCIWGKVARSHSNSGVVRAKFKSNLPPKSVGD 87 (98)
Q Consensus 14 ~kg~~lgykRg~~~Q~~~~aLlKieGV~~k~~Ak~~~~------~~k~RviwGKV~r~HGnsGvVrAkF~~nLPp~AiG~ 87 (98)
+||+|+|||||++||+|||||||||||+++|||....+ ....++|||||||+|||||+|||+|++||||||||+
T Consensus 3 ~Kg~~~gykRg~~nQ~~~taLlkieGV~~~~~a~fylGKrvayv~~~g~~iwGKVtr~HGnsGvVrAkF~~nLP~~a~G~ 82 (87)
T 3j21_c 3 IKGVVLSYRRSKENQHNNVMIIKPLDVNSREEASKLIGRLVLWKSPSGKILKGKIVRVHGTKGAVRARFEKGLPGQALGD 82 (87)
T ss_dssp EEEEEEEESCCSSCCCTTCEEEEESSCCSHHHHGGGTTCEEEECCSSSCCEEEEEEEECCSSSCEEEEESSCCCSSCSCC
T ss_pred eeEEEEecccccCcCCCCeEEEEEcCcCCHHHHHhhcCceEEEEeCCCCEEEEEEEeeeCCCCeEEEEeCCCCChHHcCC
Confidence 79999999999999999999999999999999886532 123469999999999999999999999999999999
Q ss_pred eEEE
Q 040909 88 RVRV 91 (98)
Q Consensus 88 ~VrV 91 (98)
+|||
T Consensus 83 ~Vri 86 (87)
T 3j21_c 83 YVEI 86 (87)
T ss_dssp EECC
T ss_pred eEEe
Confidence 9997
No 6
>3h9n_A Ribosome maturation factor RIMM; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.70A {Haemophilus influenzae}
Probab=81.48 E-value=1.8 Score=30.82 Aligned_cols=29 Identities=14% Similarity=0.088 Sum_probs=24.3
Q ss_pred eEEEeEEEeecCCCceEEEEeCCCCCccC
Q 040909 56 RCIWGKVARSHSNSGVVRAKFKSNLPPKS 84 (98)
Q Consensus 56 RviwGKV~r~HGnsGvVrAkF~~nLPp~A 84 (98)
++..|+|.++||-.|-|++.-.+.-|-..
T Consensus 2 ~v~vG~I~~~hGikGevkv~~~Td~pe~~ 30 (177)
T 3h9n_A 2 IEVVGKLGSTYGIRGWLRIYSSTEQAESI 30 (177)
T ss_dssp EEEEEEEEEECSSSSCEEEEECSSSSGGG
T ss_pred EEEEEEEeCCCccCEEEEEEECCCCHHHh
Confidence 46779999999999999998877777643
No 7
>2dyi_A Probable 16S rRNA-processing protein RIMM; ribosomal protein S19, PRC-barrel, STRU genomics, NPPSFA; 2.00A {Thermus thermophilus} PDB: 3a1p_A 2dog_A
Probab=80.28 E-value=1.4 Score=31.03 Aligned_cols=22 Identities=14% Similarity=0.058 Sum_probs=18.9
Q ss_pred EEEeEEEeecCCCceEEEEeCCC
Q 040909 57 CIWGKVARSHSNSGVVRAKFKSN 79 (98)
Q Consensus 57 viwGKV~r~HGnsGvVrAkF~~n 79 (98)
+..|+|.++||-.|-|++ |--.
T Consensus 4 v~vG~I~~~hGikGevkv-~td~ 25 (162)
T 2dyi_A 4 VEIGRFGAPYALKGGLRF-RGEP 25 (162)
T ss_dssp EEEEEEEEECSSSSCEEE-EECG
T ss_pred EEEEEEeCCCccCeEEEE-EEch
Confidence 567999999999999999 6553
No 8
>2qgg_A 16S rRNA-processing protein RIMM; X-RAY, NESG, ASR73, structural genomics, PSI-2, protein structure initiative; 2.40A {Acinetobacter calcoaceticus}
Probab=79.52 E-value=2 Score=30.71 Aligned_cols=27 Identities=11% Similarity=0.058 Sum_probs=23.5
Q ss_pred eEEEeEEEeecCCCceEEEEeCCCCCc
Q 040909 56 RCIWGKVARSHSNSGVVRAKFKSNLPP 82 (98)
Q Consensus 56 RviwGKV~r~HGnsGvVrAkF~~nLPp 82 (98)
.+..|+|.++||-.|-|+++-.+.-|.
T Consensus 11 ~v~vG~I~~~hGikGevkv~~~td~pe 37 (182)
T 2qgg_A 11 RIQIGQLRSAYGLNGWLWVYSNTEPMS 37 (182)
T ss_dssp EEEEEEEEEEETTTTEEEEEECSSSGG
T ss_pred EEEEEEEeCCcccCEEEEEEECCCCHH
Confidence 467899999999999999988877664
No 9
>2f1l_A 16S rRNA processing protein; structural genomics, joint CENT structural genomics, JCSG, protein structure initiative, PS unknown function; HET: UNL; 2.46A {Pseudomonas aeruginosa} SCOP: b.41.1.4 b.43.3.4
Probab=78.20 E-value=2.8 Score=30.24 Aligned_cols=27 Identities=15% Similarity=0.091 Sum_probs=23.6
Q ss_pred eEEEeEEEeecCCCceEEEEeCCCCCc
Q 040909 56 RCIWGKVARSHSNSGVVRAKFKSNLPP 82 (98)
Q Consensus 56 RviwGKV~r~HGnsGvVrAkF~~nLPp 82 (98)
.+..|+|.++||-.|-|+++-.+.-|.
T Consensus 20 ~v~VG~I~~~hGikGeVkV~~~Td~pe 46 (187)
T 2f1l_A 20 LVVIGKIVSVYGIRGEVKVYSFTDPLD 46 (187)
T ss_dssp EEEEEEEEEEETTTTEEEEEECSSSGG
T ss_pred EEEEEEEeCCEeeCEEEEEEECCCCHH
Confidence 467799999999999999988888773
No 10
>3h9n_A Ribosome maturation factor RIMM; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.70A {Haemophilus influenzae}
Probab=72.08 E-value=5.5 Score=28.23 Aligned_cols=27 Identities=19% Similarity=0.407 Sum_probs=20.1
Q ss_pred EEEeeecccCCCCCCeeEEEecCccchHHhhh
Q 040909 17 TILGYKRSKSNQYPNTSLIQIKGVNIKEEAKT 48 (98)
Q Consensus 17 ~~lgykRg~~~Q~~~~aLlKieGV~~k~~Ak~ 48 (98)
.+.++|. +.+..|+|++||+|+++|..
T Consensus 48 ~v~~~r~-----~~~~~lvkf~gi~dr~~Ae~ 74 (177)
T 3h9n_A 48 ELENWRY-----HNHEIIVKLKGVDDREAAQI 74 (177)
T ss_dssp CEEEEEE-----SSSCEEEEESSCCSHHHHHT
T ss_pred EEEEEEE-----eCCEEEEEEcCCCCHHHHHH
Confidence 3455554 34568999999999999874
No 11
>2f1l_A 16S rRNA processing protein; structural genomics, joint CENT structural genomics, JCSG, protein structure initiative, PS unknown function; HET: UNL; 2.46A {Pseudomonas aeruginosa} SCOP: b.41.1.4 b.43.3.4
Probab=70.09 E-value=7.8 Score=27.86 Aligned_cols=28 Identities=21% Similarity=0.325 Sum_probs=21.1
Q ss_pred EEEEeeecccCCCCCCeeEEEecCccchHHhhh
Q 040909 16 GTILGYKRSKSNQYPNTSLIQIKGVNIKEEAKT 48 (98)
Q Consensus 16 g~~lgykRg~~~Q~~~~aLlKieGV~~k~~Ak~ 48 (98)
-.+.++|.. .+..|+|++||+|+++|..
T Consensus 65 ~~v~~~r~~-----~~~~ivkf~gi~dr~~Ae~ 92 (187)
T 2f1l_A 65 AELVRGRLH-----GKVLAAKLKGLDDREEART 92 (187)
T ss_dssp EEEEEEEEE-----TTEEEEEETTCCSHHHHHT
T ss_pred EEEEEEEEE-----CCEEEEEEeCCCCHHHHHH
Confidence 345666642 4678999999999999764
No 12
>2dyi_A Probable 16S rRNA-processing protein RIMM; ribosomal protein S19, PRC-barrel, STRU genomics, NPPSFA; 2.00A {Thermus thermophilus} PDB: 3a1p_A 2dog_A
Probab=69.36 E-value=2.6 Score=29.60 Aligned_cols=27 Identities=19% Similarity=0.246 Sum_probs=21.4
Q ss_pred EEEeeecccCCCCCCeeEEEecCccchHHhhh
Q 040909 17 TILGYKRSKSNQYPNTSLIQIKGVNIKEEAKT 48 (98)
Q Consensus 17 ~~lgykRg~~~Q~~~~aLlKieGV~~k~~Ak~ 48 (98)
.+.++|.. .+..++|++||+|+++|..
T Consensus 42 ~v~~~r~~-----~~~~ivkf~gi~~r~~Ae~ 68 (162)
T 2dyi_A 42 AIEDLYRV-----GEELVVHLAGVTDRTLAEA 68 (162)
T ss_dssp EEEEEEEE-----TTEEEEEETTCCSHHHHHT
T ss_pred EEEEEEEE-----CCEEEEEEcCCCCHHHHHH
Confidence 66777642 5678999999999999764
No 13
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=69.02 E-value=0.67 Score=37.20 Aligned_cols=63 Identities=19% Similarity=0.293 Sum_probs=41.7
Q ss_pred CCCCeeEEEecCccchHH-hhhcCCCceeeE----EEeEEEeecCCCceEEEEeCCCCCccCCCCeEEEEEeec
Q 040909 28 QYPNTSLIQIKGVNIKEE-AKTKKNGTHYRC----IWGKVARSHSNSGVVRAKFKSNLPPKSVGDRVRVFMYPN 96 (98)
Q Consensus 28 Q~~~~aLlKieGV~~k~~-Ak~~~~~~k~Rv----iwGKV~r~HGnsGvVrAkF~~nLPp~AiG~~VrVmLyps 96 (98)
++.++++++ |.-+++. ..+..+ -+... |+|.|..+.|.||.++|.|.-.|.++ +.|.+-||..
T Consensus 413 ~~~~~~i~~--~lf~~~~~~~~f~g-~~v~~~~g~~~G~I~~~fg~~G~~~~~f~~~~~~~---d~v~~~~~~~ 480 (482)
T 1wb1_A 413 IDKGRTVID--GLAQSKVAAEKLIG-EEISIEGKDIVGKIKGTFGTKGLLTAEFSGNVENR---DKVILNRLRR 480 (482)
T ss_dssp CCSSCCEET--TSCSSHHHHHHSCS-CCCEETTTCCCBCCCCCBTTTTBBCCCBSSCCCSS---CEEEEECCCS
T ss_pred EcCCEEEEE--cCccchhhhHHhcC-cEEEEcCCceEEEEeccCCCCceEEEEecCCCCCC---Ceeeeehhhc
Confidence 456666655 5555553 333222 11111 46999999999999999999998765 6677777653
No 14
>2qgg_A 16S rRNA-processing protein RIMM; X-RAY, NESG, ASR73, structural genomics, PSI-2, protein structure initiative; 2.40A {Acinetobacter calcoaceticus}
Probab=67.08 E-value=3 Score=29.71 Aligned_cols=27 Identities=19% Similarity=0.314 Sum_probs=20.4
Q ss_pred EEEeeecccCCCCCCeeEEEecCccchHHhhh
Q 040909 17 TILGYKRSKSNQYPNTSLIQIKGVNIKEEAKT 48 (98)
Q Consensus 17 ~~lgykRg~~~Q~~~~aLlKieGV~~k~~Ak~ 48 (98)
.+.++|. +.+..|+|++||+++++|..
T Consensus 57 ~v~~~r~-----~~~~~ivkf~gi~dr~~Ae~ 83 (182)
T 2qgg_A 57 DVKRWKP-----HGKGLVVSLKGVSDRTGAES 83 (182)
T ss_dssp CEEEEEE-----ETTEEEEEETTCCSHHHHHT
T ss_pred EEEEEEE-----cCCEEEEEECCCCCHHHHHH
Confidence 3555653 35678999999999999764
No 15
>4gop_A Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=53.58 E-value=26 Score=23.27 Aligned_cols=39 Identities=28% Similarity=0.333 Sum_probs=28.9
Q ss_pred CceeeEEEeEEEeecCCC--------ceEEEEeCCCCCccCCCCeEEEE
Q 040909 52 GTHYRCIWGKVARSHSNS--------GVVRAKFKSNLPPKSVGDRVRVF 92 (98)
Q Consensus 52 ~~k~RviwGKV~r~HGns--------GvVrAkF~~nLPp~AiG~~VrVm 92 (98)
+...| |.|||+..||+. |.|.+++..+++.+ ++.-|.|.
T Consensus 18 g~~Vr-ivGkV~~~~g~~~~l~s~d~~~Vtv~l~~~~~~~-~~~~vEVi 64 (114)
T 4gop_A 18 GQTVR-IVGKVHKVTGNTLLMQTSDLGNVEIAMTPDSDVS-SSTFVEVT 64 (114)
T ss_dssp TSEEE-EEEEEEEEETTEEEEECTTSCEEEEECCSSCCGG-GCSEEEEE
T ss_pred CCeEE-EEEEEeeeCCCEEEEEeCCCCEEEEEeCCCCCcc-cCcEEEEE
Confidence 45566 669999999963 78888888877754 67776654
No 16
>3kdf_A Replication protein A 14 kDa subunit; wheat GERM cell free, protein complex, center for eukaryotic structural genomics, PSI; HET: MSE; 1.98A {Homo sapiens} SCOP: b.40.4.3 PDB: 1quq_B 1l1o_A
Probab=51.69 E-value=42 Score=22.50 Aligned_cols=38 Identities=13% Similarity=0.129 Sum_probs=26.1
Q ss_pred CceeeEEEeEEEeecCCC----------ceEEEEeCCCCCccCCCCeEEE
Q 040909 52 GTHYRCIWGKVARSHSNS----------GVVRAKFKSNLPPKSVGDRVRV 91 (98)
Q Consensus 52 ~~k~RviwGKV~r~HGns----------GvVrAkF~~nLPp~AiG~~VrV 91 (98)
+...| ++|||.+.|.+. |.|.+++...|+... +.-|.|
T Consensus 22 gk~Vr-ivGkV~~~~~~g~~~~l~s~Dg~~Vtv~l~~p~~~~l-~~~vEV 69 (121)
T 3kdf_A 22 DKPVC-FVGRLEKIHPTGKMFILSDGEGKNGTIELMEPLDEEI-SGIVEV 69 (121)
T ss_dssp TCEEE-EEEEEEEECTTSSEEEEECTTSCEEEEECSSCCSSCC-CSEEEE
T ss_pred CCeEE-EEEEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCccc-CcEEEE
Confidence 34455 779999999433 789999988665433 555554
No 17
>3kxt_A Chromatin protein CREN7; protein-DNA complex, crenarchaea chromatin protein, minor-GR binding, methylation; 1.60A {Sulfolobus solfataricus} PDB: 2jtm_A 3lwh_A* 3lwi_A*
Probab=46.92 E-value=12 Score=22.87 Aligned_cols=18 Identities=22% Similarity=0.265 Sum_probs=16.4
Q ss_pred EEeecCCCceEEEEeCCC
Q 040909 62 VARSHSNSGVVRAKFKSN 79 (98)
Q Consensus 62 V~r~HGnsGvVrAkF~~n 79 (98)
+..|||..|++.+-|+..
T Consensus 23 vL~P~GrkGVkIgLFk~P 40 (56)
T 3kxt_A 23 ALAPKGRKGVKIGLFKDP 40 (56)
T ss_dssp EECCTTSCCEEEEEEECT
T ss_pred EEcCCCCCceEEEEEECC
Confidence 678999999999999965
No 18
>1xk5_A Snurportin-1; protein-RNA-complex, transport protein; HET: TPG; 2.40A {Homo sapiens}
Probab=29.03 E-value=39 Score=25.02 Aligned_cols=22 Identities=27% Similarity=0.392 Sum_probs=18.8
Q ss_pred EeecCCCceEEEEeCCCCCccC
Q 040909 63 ARSHSNSGVVRAKFKSNLPPKS 84 (98)
Q Consensus 63 ~r~HGnsGvVrAkF~~nLPp~A 84 (98)
|.++-.+|....+|.++||+-.
T Consensus 43 T~~~~k~G~~~~~F~S~LPgG~ 64 (204)
T 1xk5_A 43 TSAYTKSGYCVNRFSSLLPGGN 64 (204)
T ss_dssp EEEECTTSCEEEEECCSSSSSC
T ss_pred EEEECCCCcEEEEEcccCCCCC
Confidence 5577889999999999999854
No 19
>2lfe_A E3 ubiquitin-protein ligase HECW2; structural genomics, northeast structural genomics consortiu SGC; NMR {Homo sapiens}
Probab=28.22 E-value=22 Score=25.22 Aligned_cols=12 Identities=42% Similarity=0.495 Sum_probs=10.3
Q ss_pred eecCCCceEEEE
Q 040909 64 RSHSNSGVVRAK 75 (98)
Q Consensus 64 r~HGnsGvVrAk 75 (98)
=-||+||.+||-
T Consensus 118 YYhg~SgaLRAt 129 (138)
T 2lfe_A 118 YYHGISGALRAT 129 (138)
T ss_dssp EEETTTTEEEEE
T ss_pred EecCcccceeec
Confidence 369999999994
No 20
>2be7_D Aspartate carbamoyltransferase regulatory chain; atcase, psychrophilic, cold adaptation, alloste holoenzyme; 2.85A {Moritella profunda}
Probab=23.19 E-value=1.7e+02 Score=20.74 Aligned_cols=47 Identities=19% Similarity=0.227 Sum_probs=31.5
Q ss_pred CeeEEEecCcc-chHHhhhc---CCCceeeEEEeEEEeecCCCceEEEEeCCCCCccCCC
Q 040909 31 NTSLIQIKGVN-IKEEAKTK---KNGTHYRCIWGKVARSHSNSGVVRAKFKSNLPPKSVG 86 (98)
Q Consensus 31 ~~aLlKieGV~-~k~~Ak~~---~~~~k~RviwGKV~r~HGnsGvVrAkF~~nLPp~AiG 86 (98)
..-+|||||.. +.+|+... -..-....| ..+.|.-||+-.||.+.-|
T Consensus 54 ~KDIIKIe~~~l~~~e~~~LaliaP~aTvNiI---------~d~~VveK~~~~lP~~I~g 104 (153)
T 2be7_D 54 AKDLIKVENTEITKSQANQLALLAPNATINII---------ENFKVTDKHSLTLPNEVEN 104 (153)
T ss_dssp -CEEEEEESCCCCHHHHGGGGGTCTTCCEEEE---------ETTEEEEEECCCCCSEECS
T ss_pred cCCEEEECCcccChhhhheeEEECCCCEEEEe---------eCCEEEEeccCCCcHHhCC
Confidence 45799999988 33555543 123345544 2688889999999987655
Done!