BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040912
(102 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3P01|A Chain A, Crystal Structure Of Two-Component Response Regulator From
Nostoc Sp. Pcc 7120
pdb|3P01|B Chain B, Crystal Structure Of Two-Component Response Regulator From
Nostoc Sp. Pcc 7120
pdb|3P01|C Chain C, Crystal Structure Of Two-Component Response Regulator From
Nostoc Sp. Pcc 7120
Length = 184
Score = 30.0 bits (66), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 7/62 (11%)
Query: 24 RMAVANNTNNVPK-GHIAIYVGEGYRKRFVIPISYLNHPL------FQDLLNMAEEEFGF 76
++ VA N PK I+ Y G + VIPI+Y N L +Q +++ E+E
Sbjct: 106 QIQVAANIAKDPKLASISQYQDNGIQSHVVIPITYRNEXLGVLSLQWQQPISLREDELTL 165
Query: 77 DH 78
H
Sbjct: 166 IH 167
>pdb|4GMV|A Chain A, Crystal Structure Of The Coiled-Coil, Ra And Ph Domains Of
Lamellipodin
pdb|4GMV|B Chain B, Crystal Structure Of The Coiled-Coil, Ra And Ph Domains Of
Lamellipodin
Length = 281
Score = 29.3 bits (64), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 16/31 (51%), Gaps = 3/31 (9%)
Query: 37 GHIAIYVGEGYRKRFVIPISY---LNHPLFQ 64
H+ +Y G+ YR ++ P Y L HP Q
Sbjct: 207 DHVNVYYGQDYRNKYKAPTDYCLVLKHPQIQ 237
>pdb|4GN1|A Chain A, Crystal Structure Of The Ra And Ph Domains Of Lamellipodin
pdb|4GN1|B Chain B, Crystal Structure Of The Ra And Ph Domains Of Lamellipodin
pdb|4GN1|C Chain C, Crystal Structure Of The Ra And Ph Domains Of Lamellipodin
pdb|4GN1|D Chain D, Crystal Structure Of The Ra And Ph Domains Of Lamellipodin
Length = 255
Score = 28.9 bits (63), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 16/31 (51%), Gaps = 3/31 (9%)
Query: 37 GHIAIYVGEGYRKRFVIPISY---LNHPLFQ 64
H+ +Y G+ YR ++ P Y L HP Q
Sbjct: 181 DHVNVYYGQDYRNKYKAPTDYCLVLKHPQIQ 211
>pdb|2XFB|B Chain B, The Chikungunya E1 E2 Envelope Glycoprotein Complex Fit
Into The Sindbis Virus Cryo-Em Map
pdb|2XFB|E Chain E, The Chikungunya E1 E2 Envelope Glycoprotein Complex Fit
Into The Sindbis Virus Cryo-Em Map
pdb|2XFB|G Chain G, The Chikungunya E1 E2 Envelope Glycoprotein Complex Fit
Into The Sindbis Virus Cryo-Em Map
pdb|2XFB|I Chain I, The Chikungunya E1 E2 Envelope Glycoprotein Complex Fit
Into The Sindbis Virus Cryo-Em Map
Length = 334
Score = 25.4 bits (54), Expect = 7.8, Method: Composition-based stats.
Identities = 18/50 (36%), Positives = 21/50 (42%), Gaps = 3/50 (6%)
Query: 23 IRMAVANNTNNVPKGHIAIYVGEGYRKRFVIPISYLNHPLFQDLLNMAEE 72
I +AN T VPK Y K VI + Y +HP NM EE
Sbjct: 250 IPFPLANVTCRVPKARNPTVT---YGKNQVIMLLYPDHPTLLSYRNMGEE 296
>pdb|3N40|P Chain P, Crystal Structure Of The Immature Envelope Glycoprotein
Complex Of Chikungunya Virus
Length = 401
Score = 25.4 bits (54), Expect = 8.3, Method: Composition-based stats.
Identities = 18/50 (36%), Positives = 21/50 (42%), Gaps = 3/50 (6%)
Query: 23 IRMAVANNTNNVPKGHIAIYVGEGYRKRFVIPISYLNHPLFQDLLNMAEE 72
I +AN T VPK Y K VI + Y +HP NM EE
Sbjct: 317 IPFPLANVTCRVPKARNPTVT---YGKNQVIMLLYPDHPTLLSYRNMGEE 363
>pdb|2XFC|B Chain B, The Chikungunya E1 E2 Envelope Glycoprotein Complex Fit
Into The Semliki Forest Virus Cryo-Em Map
pdb|2XFC|E Chain E, The Chikungunya E1 E2 Envelope Glycoprotein Complex Fit
Into The Semliki Forest Virus Cryo-Em Map
pdb|2XFC|G Chain G, The Chikungunya E1 E2 Envelope Glycoprotein Complex Fit
Into The Semliki Forest Virus Cryo-Em Map
pdb|2XFC|I Chain I, The Chikungunya E1 E2 Envelope Glycoprotein Complex Fit
Into The Semliki Forest Virus Cryo-Em Map
Length = 423
Score = 25.4 bits (54), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 21/50 (42%), Gaps = 3/50 (6%)
Query: 23 IRMAVANNTNNVPKGHIAIYVGEGYRKRFVIPISYLNHPLFQDLLNMAEE 72
I +AN T VPK Y K VI + Y +HP NM EE
Sbjct: 257 IPFPLANVTCRVPKARNPTVT---YGKNQVIMLLYPDHPTLLSYRNMGEE 303
>pdb|3N41|B Chain B, Crystal Structure Of The Mature Envelope Glycoprotein
Complex (Spontaneous Cleavage) Of Chikungunya Virus.
pdb|3N42|B Chain B, Crystal Structures Of The Mature Envelope Glycoprotein
Complex (Furin Cleavage) Of Chikungunya Virus.
pdb|3N43|B Chain B, Crystal Structures Of The Mature Envelope Glycoprotein
Complex (Trypsin Cleavage) Of Chikungunya Virus.
pdb|3N44|B Chain B, Crystal Structure Of The Mature Envelope Glycoprotein
Complex (Trypsin Cleavage; Osmium Soak) Of Chikungunya
Virus
Length = 360
Score = 25.4 bits (54), Expect = 8.7, Method: Composition-based stats.
Identities = 18/50 (36%), Positives = 21/50 (42%), Gaps = 3/50 (6%)
Query: 23 IRMAVANNTNNVPKGHIAIYVGEGYRKRFVIPISYLNHPLFQDLLNMAEE 72
I +AN T VPK Y K VI + Y +HP NM EE
Sbjct: 257 IPFPLANVTCRVPKARNPTVT---YGKNQVIMLLYPDHPTLLSYRNMGEE 303
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.138 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,028,036
Number of Sequences: 62578
Number of extensions: 115227
Number of successful extensions: 252
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 252
Number of HSP's gapped (non-prelim): 7
length of query: 102
length of database: 14,973,337
effective HSP length: 67
effective length of query: 35
effective length of database: 10,780,611
effective search space: 377321385
effective search space used: 377321385
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)