Query 040912
Match_columns 102
No_of_seqs 112 out of 642
Neff 4.8
Searched_HMMs 46136
Date Fri Mar 29 13:02:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040912.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040912hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03090 auxin-responsive fami 100.0 1.6E-41 3.5E-46 236.2 9.7 97 1-99 1-103 (104)
2 PLN03220 uncharacterized prote 100.0 2.3E-40 5.1E-45 230.5 9.5 97 1-98 1-102 (105)
3 PF02519 Auxin_inducible: Auxi 100.0 3.6E-37 7.9E-42 212.0 8.1 98 1-100 1-100 (100)
4 PLN03219 uncharacterized prote 100.0 3.1E-36 6.6E-41 210.7 9.1 98 1-98 1-104 (108)
5 PRK02899 adaptor protein; Prov 84.1 0.99 2.1E-05 34.2 2.7 24 61-85 39-62 (197)
6 PF02100 ODC_AZ: Ornithine dec 80.5 2.3 5E-05 29.4 3.2 51 47-99 23-77 (108)
7 PRK02315 adaptor protein; Prov 78.8 1.7 3.7E-05 33.6 2.4 24 61-85 39-62 (233)
8 smart00666 PB1 PB1 domain. Pho 76.4 14 0.0003 23.0 5.7 52 42-99 7-68 (81)
9 PF02214 BTB_2: BTB/POZ domain 75.0 3.1 6.7E-05 26.8 2.5 55 41-100 3-61 (94)
10 PF05389 MecA: Negative regula 69.9 1.5 3.2E-05 33.1 0.0 25 60-85 38-62 (220)
11 PF02209 VHP: Villin headpiece 47.1 10 0.00022 21.8 0.8 19 57-75 1-19 (36)
12 PF08861 DUF1828: Domain of un 45.9 67 0.0015 20.8 4.8 40 60-99 44-83 (90)
13 smart00153 VHP Villin headpiec 45.6 12 0.00026 21.4 1.0 19 57-75 1-19 (36)
14 PF11834 DUF3354: Domain of un 43.9 19 0.00041 23.3 1.8 24 48-77 19-42 (69)
15 PF12058 DUF3539: Protein of u 41.4 5.1 0.00011 27.5 -1.2 11 56-66 4-14 (88)
16 cd05992 PB1 The PB1 domain is 39.9 88 0.0019 19.1 7.2 54 41-99 5-68 (81)
17 PF11822 DUF3342: Domain of un 39.3 47 0.001 27.4 3.9 50 47-100 12-66 (317)
18 PRK10308 3-methyl-adenine DNA 37.5 1.4E+02 0.0029 23.7 6.2 63 36-99 45-121 (283)
19 cd06410 PB1_UP2 Uncharacterize 37.5 86 0.0019 21.3 4.4 54 39-98 16-81 (97)
20 PF11876 DUF3396: Protein of u 36.6 31 0.00067 26.3 2.3 40 48-87 24-65 (208)
21 PF14317 YcxB: YcxB-like prote 32.4 98 0.0021 17.4 3.6 31 35-67 28-58 (62)
22 PF06544 DUF1115: Protein of u 30.9 1.5E+02 0.0033 20.4 4.9 27 51-77 2-28 (128)
23 cd06407 PB1_NLP A PB1 domain i 30.7 1.6E+02 0.0034 19.2 4.9 48 41-93 5-63 (82)
24 PF15387 DUF4611: Domain of un 30.1 43 0.00093 23.3 2.0 21 79-99 11-35 (96)
25 PF05194 UreE_C: UreE urease a 28.4 1E+02 0.0022 19.9 3.5 27 37-70 25-51 (87)
26 COG1759 5-formaminoimidazole-4 28.2 25 0.00055 29.5 0.7 27 29-55 85-112 (361)
27 cd04751 Commd3 COMM_Domain con 27.9 65 0.0014 21.5 2.5 20 81-100 65-84 (95)
28 COG4862 MecA Negative regulato 27.6 46 0.001 26.3 2.0 26 60-86 38-63 (224)
29 PRK14193 bifunctional 5,10-met 26.3 3E+02 0.0065 22.2 6.5 54 35-101 32-87 (284)
30 PRK02797 4-alpha-L-fucosyltran 25.9 2E+02 0.0043 23.9 5.4 45 33-77 141-206 (322)
31 PF07429 Glyco_transf_56: 4-al 25.2 2E+02 0.0042 24.3 5.3 45 33-77 180-245 (360)
32 PRK13277 5-formaminoimidazole- 24.9 21 0.00045 30.0 -0.4 26 29-54 85-111 (366)
33 TIGR02529 EutJ ethanolamine ut 24.1 87 0.0019 23.8 2.9 41 49-90 33-73 (239)
34 PF08948 DUF1859: Domain of un 23.3 27 0.00058 25.1 -0.0 28 35-64 86-123 (126)
35 PF12062 HSNSD: heparan sulfat 23.1 68 0.0015 28.1 2.4 41 35-76 95-141 (487)
36 PRK14189 bifunctional 5,10-met 22.5 3.9E+02 0.0084 21.5 6.4 54 35-101 32-87 (285)
37 COG3769 Predicted hydrolase (H 21.9 88 0.0019 25.4 2.6 42 32-77 75-120 (274)
38 PF00651 BTB: BTB/POZ domain; 21.1 2.2E+02 0.0048 17.7 4.9 54 39-99 13-71 (111)
39 PF00564 PB1: PB1 domain; Int 20.7 2.1E+02 0.0047 17.4 6.1 53 41-99 6-69 (84)
40 PRK14166 bifunctional 5,10-met 20.5 4.6E+02 0.0099 21.1 6.5 54 35-101 30-85 (282)
41 cd06080 MUM1_like Mutated mela 20.3 1.6E+02 0.0034 19.5 3.2 42 35-76 28-75 (80)
42 PF02641 DUF190: Uncharacteriz 20.0 2.1E+02 0.0045 19.0 3.8 30 38-76 5-34 (101)
No 1
>PLN03090 auxin-responsive family protein; Provisional
Probab=100.00 E-value=1.6e-41 Score=236.17 Aligned_cols=97 Identities=53% Similarity=0.805 Sum_probs=86.7
Q ss_pred Cccc----ccchHHHHHHHhhhhhHhhhhhh--ccCCCCCCCceEEEEeeCCceeEEEEeecccCcHHHHHHHHHHHhhc
Q 040912 1 MGIQ----LMGFAHAKQKLQRTLSAKIRMAV--ANNTNNVPKGHIAIYVGEGYRKRFVIPISYLNHPLFQDLLNMAEEEF 74 (102)
Q Consensus 1 m~~~----~~~~~~~k~~l~r~~s~~~~~~~--~~~~~~vpkG~~aVyVG~~e~kRfvVp~~~L~hP~F~~LL~~aeEEf 74 (102)
|||+ +..++++||+||||.|.+++++. ...+.+||+||||||||+ +++||+||++|||||.|++||++|||||
T Consensus 1 m~~~k~~ki~~~~~~kq~l~r~~s~~~~~~~~~~~~~~~vpkG~~aVyVG~-~~~RfvVp~~~L~hP~F~~LL~~aeeEf 79 (104)
T PLN03090 1 MAIKKSNKLTQTAMLKQILKRCSSLGKKQGYDEDGLPLDVPKGHFPVYVGE-NRSRYIVPISFLTHPEFQSLLQQAEEEF 79 (104)
T ss_pred CCcccccchhHHHHHHHHHHHHHHhcccCCcccccCCCCCCCCcEEEEECC-CCEEEEEEHHHcCCHHHHHHHHHHHHHh
Confidence 7775 34578999999999999876532 346789999999999998 5999999999999999999999999999
Q ss_pred CCCCCCCceeeeCcHHHHHHHHHhh
Q 040912 75 GFDHPMGGLTIPCSEEYFVSLTSTL 99 (102)
Q Consensus 75 G~~~~~G~L~IPC~~~~F~~vl~~l 99 (102)
||+| +|+|+|||+++.|++++|+|
T Consensus 80 Gf~~-~G~L~IPC~~~~Fe~ll~~i 103 (104)
T PLN03090 80 GFDH-DMGLTIPCEEVVFRSLTSMI 103 (104)
T ss_pred CCCC-CCcEEEeCCHHHHHHHHHHh
Confidence 9995 59999999999999999998
No 2
>PLN03220 uncharacterized protein; Provisional
Probab=100.00 E-value=2.3e-40 Score=230.53 Aligned_cols=97 Identities=52% Similarity=0.949 Sum_probs=86.3
Q ss_pred CcccccchH-HHHHHHhhhhhHhhhh-hhccCCCCCCCceEEEEeeCC---ceeEEEEeecccCcHHHHHHHHHHHhhcC
Q 040912 1 MGIQLMGFA-HAKQKLQRTLSAKIRM-AVANNTNNVPKGHIAIYVGEG---YRKRFVIPISYLNHPLFQDLLNMAEEEFG 75 (102)
Q Consensus 1 m~~~~~~~~-~~k~~l~r~~s~~~~~-~~~~~~~~vpkG~~aVyVG~~---e~kRfvVp~~~L~hP~F~~LL~~aeEEfG 75 (102)
||++++.|+ +.||+|+|++ ++++. ++++.+.+|||||||||||++ |++||+||++|||||.|++||++||||||
T Consensus 1 ~~~~~~~~~~~~k~~~~~~~-~~~~~~~~~~~~~~VPkGh~aVyVGe~~~~e~kRFVVPv~yL~hP~F~~LL~~AeEEfG 79 (105)
T PLN03220 1 MGLSRFAISNATKQILKLNS-LANRNRTSSSSSDHVPKGHVAVYVGEQIEMEKKRFVVPISFLNHPSFKEFLSRAEEEFG 79 (105)
T ss_pred CCcchhhhHHHHHHHHHHHh-hcccccccccccCCCCCCeEEEEECCCCCccceEEEEEHHHcCChHHHHHHHHHHHHhC
Confidence 899999999 5699999999 55443 235677899999999999973 58999999999999999999999999999
Q ss_pred CCCCCCceeeeCcHHHHHHHHHh
Q 040912 76 FDHPMGGLTIPCSEEYFVSLTST 98 (102)
Q Consensus 76 ~~~~~G~L~IPC~~~~F~~vl~~ 98 (102)
|+|++|+|+|||+++.|++++..
T Consensus 80 f~~~~G~L~IPCd~~~F~~ll~s 102 (105)
T PLN03220 80 FNHPMGGLTIPCREEVFLDLIAS 102 (105)
T ss_pred CCCCCCCEEeeCCHHHHHHHHHh
Confidence 99767999999999999999874
No 3
>PF02519 Auxin_inducible: Auxin responsive protein; InterPro: IPR003676 This family consists of the protein products of a gene cluster that encodes a group of auxin-regulated RNAs (small auxin up RNAs, SAURs) []. Proteins from this ARG7 auxin responsive genes family have no identified functional role [].
Probab=100.00 E-value=3.6e-37 Score=212.05 Aligned_cols=98 Identities=51% Similarity=0.821 Sum_probs=78.2
Q ss_pred CcccccchHHHHHHHhhhhhHhhhhhh--ccCCCCCCCceEEEEeeCCceeEEEEeecccCcHHHHHHHHHHHhhcCCCC
Q 040912 1 MGIQLMGFAHAKQKLQRTLSAKIRMAV--ANNTNNVPKGHIAIYVGEGYRKRFVIPISYLNHPLFQDLLNMAEEEFGFDH 78 (102)
Q Consensus 1 m~~~~~~~~~~k~~l~r~~s~~~~~~~--~~~~~~vpkG~~aVyVG~~e~kRfvVp~~~L~hP~F~~LL~~aeEEfG~~~ 78 (102)
|..++.++..+++..+++.+...+.+. ++...++|+||||||||+ +++||+||++|||||+|++||++|||||||++
T Consensus 1 M~~~~k~~~~~~k~~~~~~~~~~~~~~~~~~~~~~vp~G~~~VyVG~-~~~Rfvvp~~~L~hp~f~~LL~~aeeEfG~~~ 79 (100)
T PF02519_consen 1 MASRLKSLASAKKWQSRARSKSSSSSSSRSSSESDVPKGHFAVYVGE-ERRRFVVPVSYLNHPLFQELLEQAEEEFGFDQ 79 (100)
T ss_pred CccHHHHHHHHHhhhhhhhhcccccccccccccCCCCCCeEEEEeCc-cceEEEechHHcCchhHHHHHHHHhhhcCcCC
Confidence 555666666555554444433222111 233488999999999998 69999999999999999999999999999996
Q ss_pred CCCceeeeCcHHHHHHHHHhhh
Q 040912 79 PMGGLTIPCSEEYFVSLTSTLN 100 (102)
Q Consensus 79 ~~G~L~IPC~~~~F~~vl~~l~ 100 (102)
+|+|+|||+++.|++++|+|+
T Consensus 80 -~G~l~iPC~~~~Fe~~l~~le 100 (100)
T PF02519_consen 80 -DGPLTIPCDVVLFEHLLWLLE 100 (100)
T ss_pred -CCcEEeeCCHHHHHHHHHHhC
Confidence 699999999999999999985
No 4
>PLN03219 uncharacterized protein; Provisional
Probab=100.00 E-value=3.1e-36 Score=210.75 Aligned_cols=98 Identities=51% Similarity=0.864 Sum_probs=76.9
Q ss_pred CcccccchHHHHHHHhhhhhHhhhhhh-----ccCCCCCCCceEEEEeeCC-ceeEEEEeecccCcHHHHHHHHHHHhhc
Q 040912 1 MGIQLMGFAHAKQKLQRTLSAKIRMAV-----ANNTNNVPKGHIAIYVGEG-YRKRFVIPISYLNHPLFQDLLNMAEEEF 74 (102)
Q Consensus 1 m~~~~~~~~~~k~~l~r~~s~~~~~~~-----~~~~~~vpkG~~aVyVG~~-e~kRfvVp~~~L~hP~F~~LL~~aeEEf 74 (102)
||+-..-+..+||+.|-.+-..+.+++ ++.+.+|||||||||||++ |++||+||++|||||+|++||++|||||
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vpkGh~aVYVG~~~E~kRFvVPi~yL~hP~F~~LL~~AeEEf 80 (108)
T PLN03219 1 MGLMRSMLPNAKQIFKSQSMRNKNGSSSPSSSTTTSGLVPKGHVAVYVGEQMEKKRFVVPISYLNHPLFREFLNRAEEEC 80 (108)
T ss_pred CchHHHHHhhHHHHHHHHHHhcccCCCCCccCCCCCCCCCCCeEEEEECCCCCceEEEEEHHHcCChHHHHHHHHHHHHh
Confidence 444333344567776533322222211 3455789999999999983 6999999999999999999999999999
Q ss_pred CCCCCCCceeeeCcHHHHHHHHHh
Q 040912 75 GFDHPMGGLTIPCSEEYFVSLTST 98 (102)
Q Consensus 75 G~~~~~G~L~IPC~~~~F~~vl~~ 98 (102)
||+|++|+|+|||+++.|+++++.
T Consensus 81 Gf~~~~G~L~IPCd~~~F~~ll~~ 104 (108)
T PLN03219 81 GFHHSMGGLTIPCREESFLHLITS 104 (108)
T ss_pred CCCCCCCCEEEeCCHHHHHHHHHh
Confidence 999777999999999999999986
No 5
>PRK02899 adaptor protein; Provisional
Probab=84.09 E-value=0.99 Score=34.21 Aligned_cols=24 Identities=33% Similarity=0.785 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHhhcCCCCCCCceee
Q 040912 61 PLFQDLLNMAEEEFGFDHPMGGLTI 85 (102)
Q Consensus 61 P~F~~LL~~aeEEfG~~~~~G~L~I 85 (102)
-+|.++|++|..|+||. .+|||+|
T Consensus 39 ~lF~~mm~Ea~~e~~F~-~~~pl~~ 62 (197)
T PRK02899 39 QLFRDMMQEANKELGFE-ADGPIAV 62 (197)
T ss_pred HHHHHHHHHhhhccCcc-cCCeEEE
Confidence 35888899999999998 5699876
No 6
>PF02100 ODC_AZ: Ornithine decarboxylase antizyme; InterPro: IPR002993 Ornithine decarboxylase antizyme (ODC-AZ) [] binds to, and destabilises, ornithine decarboxylase (ODC), a key enzyme in polyamine synthesis. ODC is then rapidly degraded. The expression of ODC-AZ requires programmed, ribosomal frameshifting which is modulated according to the cellular concentration of polyamines. High levels of polyamines induce a +1 ribosomal frameshift in the translation of mRNA for the antizyme leading to the expression of a full-length protein. At least two forms of ODC-AZ exist in mammals [] and the protein has been found in Drosophila (protein Gutfeeling).; GO: 0004857 enzyme inhibitor activity, 0008073 ornithine decarboxylase inhibitor activity; PDB: 1ZO0_A.
Probab=80.50 E-value=2.3 Score=29.43 Aligned_cols=51 Identities=35% Similarity=0.401 Sum_probs=27.5
Q ss_pred ceeEEE-EeecccCc---HHHHHHHHHHHhhcCCCCCCCceeeeCcHHHHHHHHHhh
Q 040912 47 YRKRFV-IPISYLNH---PLFQDLLNMAEEEFGFDHPMGGLTIPCSEEYFVSLTSTL 99 (102)
Q Consensus 47 e~kRfv-Vp~~~L~h---P~F~~LL~~aeEEfG~~~~~G~L~IPC~~~~F~~vl~~l 99 (102)
++.=|+ +|-..+.+ ..|.+||+.|||++|.++ -.+.++=+-.....++..+
T Consensus 23 ~~~L~V~ip~~~~~~~~K~~lvaLLElAee~L~c~~--vvic~~k~~~d~~~Llr~l 77 (108)
T PF02100_consen 23 ERTLFVFIPSSALGQGSKESLVALLELAEEKLGCSH--VVICLDKNRPDRASLLRTL 77 (108)
T ss_dssp TTEEEEE-SS---SS--SHHHHHHHHHHHHHH------EEEEE---SS-HHHHHHHH
T ss_pred CCEEEEEECCcccccccHHHHHHHHHHhcCcCCCCE--EEEEEECCchhHHHhhhhc
Confidence 355666 56554444 459999999999999874 5777776655566655543
No 7
>PRK02315 adaptor protein; Provisional
Probab=78.76 E-value=1.7 Score=33.59 Aligned_cols=24 Identities=25% Similarity=0.407 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHhhcCCCCCCCceee
Q 040912 61 PLFQDLLNMAEEEFGFDHPMGGLTI 85 (102)
Q Consensus 61 P~F~~LL~~aeEEfG~~~~~G~L~I 85 (102)
-+|.++|++|..|+||. .+|||+|
T Consensus 39 ~fF~~mm~Ea~~e~~F~-~~~pl~~ 62 (233)
T PRK02315 39 EFFYSMMDEVDEEDDFA-DEGPLWF 62 (233)
T ss_pred HHHHHHHHHhccccCcc-cCCeEEE
Confidence 46999999999999999 5799976
No 8
>smart00666 PB1 PB1 domain. Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.
Probab=76.41 E-value=14 Score=23.00 Aligned_cols=52 Identities=21% Similarity=0.355 Sum_probs=36.6
Q ss_pred EeeCCceeEEEEeecccCcHHHHHHHHHHHhhcCCCC---------CCC-ceeeeCcHHHHHHHHHhh
Q 040912 42 YVGEGYRKRFVIPISYLNHPLFQDLLNMAEEEFGFDH---------PMG-GLTIPCSEEYFVSLTSTL 99 (102)
Q Consensus 42 yVG~~e~kRfvVp~~~L~hP~F~~LL~~aeEEfG~~~---------~~G-~L~IPC~~~~F~~vl~~l 99 (102)
+-|+ +.+||.+|- .+.|.+|..+..+.|+... ++| .++|.++ +++...+.+.
T Consensus 7 ~~~~-~~~~~~~~~----~~s~~dL~~~i~~~~~~~~~~~~l~Y~Dedgd~v~l~sd-~Dl~~a~~~~ 68 (81)
T smart00666 7 RYGG-ETRRLSVPR----DISFEDLRSKVAKRFGLDNQSFTLKYQDEDGDLVSLTSD-EDLEEAIEEY 68 (81)
T ss_pred EECC-EEEEEEECC----CCCHHHHHHHHHHHhCCCCCCeEEEEECCCCCEEEecCH-HHHHHHHHHH
Confidence 3365 689999986 7779999999999888741 123 6788886 4555555543
No 9
>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. The Kv family can be divided into several subfamilies on the basis of sequence similarity and function. Four of these subfamilies, Kv1 (Shaker), Kv2 (Shab), Kv3 (Shaw) and Kv4 (Shal), consist of pore-forming alpha subunits that associate with different types of beta subunit. Each alpha subunit comprises six hydrophobic TM domains with a P-domain between the fifth and sixth, which partially resides in the membrane. The fourth TM domain has positively charged residues at every third residue and acts as a voltage sensor, which triggers the conformational change that opens the channel pore in response to a displacement in membrane potential []. More recently, 4 new electrically-silent alpha subunits have been cloned: Kv5 (KCNF), Kv6 (KCNG), Kv8 and Kv9 (KCNS). These subunits do not themselves possess any functional activity, but appear to form heteromeric channels with Kv2 subunits, and thus modulate Shab channel activity []. When highly expressed, they inhibit channel activity, but at lower levels show more specific modulatory actions. The N-terminal, cytoplasmic tetramerization domain (T1) of voltage-gated potassium channels encodes molecular determinants for subfamily-specific assembly of alpha-subunits into functional tetrameric channels []. This domain is found in a subset of a larger group of proteins that contain the BTB/POZ domain.; GO: 0005249 voltage-gated potassium channel activity, 0006813 potassium ion transport, 0008076 voltage-gated potassium channel complex, 0016020 membrane; PDB: 1NN7_A 3KVT_A 1EXB_E 1QDV_A 1DSX_E 1QDW_F 3LUT_B 3LNM_B 2A79_B 3DRY_C ....
Probab=74.96 E-value=3.1 Score=26.77 Aligned_cols=55 Identities=24% Similarity=0.296 Sum_probs=40.8
Q ss_pred EEeeCCceeEEEEeecccC-cH--HHHHHHHHH-HhhcCCCCCCCceeeeCcHHHHHHHHHhhh
Q 040912 41 IYVGEGYRKRFVIPISYLN-HP--LFQDLLNMA-EEEFGFDHPMGGLTIPCSEEYFVSLTSTLN 100 (102)
Q Consensus 41 VyVG~~e~kRfvVp~~~L~-hP--~F~~LL~~a-eEEfG~~~~~G~L~IPC~~~~F~~vl~~l~ 100 (102)
+=|| .++|.++.+.|. +| .|..++... ...+.- .+|.+-|-++...|++|+.-+.
T Consensus 3 lNVG---G~~f~~~~~tL~~~~~s~l~~~~~~~~~~~~~~--~~~~~fiDRdp~~F~~IL~ylr 61 (94)
T PF02214_consen 3 LNVG---GTIFETSRSTLTRYPDSLLARLFSGERSDDYDD--DDGEYFIDRDPELFEYILNYLR 61 (94)
T ss_dssp EEET---TEEEEEEHHHHHTSTTSTTTSHHHTGHGGGEET--TTTEEEESS-HHHHHHHHHHHH
T ss_pred EEEC---CEEEEEcHHHHhhCCCChhhhHHhhccccccCC--ccceEEeccChhhhhHHHHHHh
Confidence 4466 479999999887 54 688888865 233322 4599999999999999998764
No 10
>PF05389 MecA: Negative regulator of genetic competence (MecA); InterPro: IPR008681 Competence is the ability of a cell to take up exogenous DNA from its environment, resulting in transformation. It is widespread among bacteria and is probably an important mechanism for the horizontal transfer of genes. Cells that take up DNA inevitably acquire the nucleotides the DNA consists of, and, because nucleotides are needed for DNA and RNA synthesis and are expensive to synthesise, these may make a significant contribution to the cell's energy budget []. The lateral gene transfer caused by competence also contributes to the genetic diversity that makes evolution possible. DNA usually becomes available by the death and lysis of other cells. Competent bacteria use components of extracellular filaments called type 4 pili to create pores in their membranes and pull DNA through the pores into the cytoplasm. This process, including the development of competence and the expression of the uptake machinery, is regulated in response to cell-cell signalling and/or nutritional conditions []. This family contains several bacterial MecA proteins. In complex media competence development is poor, and there is little or no expression of late competence genes. Overexpression of MecA inhibits comG transcription [, , ]. MecA enables the recognition and targeting of unfolded and aggregated proteins to the ClpC protease or to other proteins involved in proteolysis. Acts negatively in the development of competence by binding ComK and recruiting it to the ClpCP protease. When overexpressed, inhibits sporulation. Also involved in Spx degradation by ClpC. ; PDB: 3JTP_C 2Y1R_O 3PXI_c 3PXG_b 3JTO_D 3JTN_A.
Probab=69.90 E-value=1.5 Score=33.13 Aligned_cols=25 Identities=40% Similarity=0.701 Sum_probs=0.0
Q ss_pred cHHHHHHHHHHHhhcCCCCCCCceee
Q 040912 60 HPLFQDLLNMAEEEFGFDHPMGGLTI 85 (102)
Q Consensus 60 hP~F~~LL~~aeEEfG~~~~~G~L~I 85 (102)
+-.|.++|++|.+|+||+. +|+|++
T Consensus 38 e~fF~~ileea~~e~~F~~-~~~l~~ 62 (220)
T PF05389_consen 38 EEFFYSILEEADEEHGFEN-DGPLTF 62 (220)
T ss_dssp --------------------------
T ss_pred HHHHHHHHHHhccccCccc-CCeEEE
Confidence 4569999999999999995 798875
No 11
>PF02209 VHP: Villin headpiece domain; InterPro: IPR003128 Villin is an F-actin bundling protein involved in the maintenance of the microvilli of the absorptive epithelia. The villin-type "headpiece" domain is a modular motif found at the extreme C terminus of larger "core" domains in over 25 cytoskeletal proteins in plants and animals, often in assocation with the Gelsolin repeat. Although the headpiece is classified as an F-actin-binding domain, it has been shown that not all headpiece domains are intrinsically F-actin-binding motifs, surface charge distribution may be an important element for F-actin recognition []. An autonomously folding, 35 residue, thermostable subdomain (HP36) of the full-length 76 amino acid residue villin headpiece, is the smallest known example of a cooperatively folded domain of a naturally occurring protein. The structure of HP36, as determined by NMR spectroscopy, consists of three short helices surrounding a tightly packed hydrophobic core []. ; GO: 0003779 actin binding, 0007010 cytoskeleton organization; PDB: 1ZV6_A 1QZP_A 1UND_A 2PPZ_A 3TJW_B 1YU8_X 2JM0_A 1WY4_A 3MYC_A 1YU5_X ....
Probab=47.10 E-value=10 Score=21.78 Aligned_cols=19 Identities=37% Similarity=0.667 Sum_probs=15.3
Q ss_pred ccCcHHHHHHHHHHHhhcC
Q 040912 57 YLNHPLFQDLLNMAEEEFG 75 (102)
Q Consensus 57 ~L~hP~F~~LL~~aeEEfG 75 (102)
||+.-.|+++..++.+||.
T Consensus 1 YLsd~dF~~vFgm~~~eF~ 19 (36)
T PF02209_consen 1 YLSDEDFEKVFGMSREEFY 19 (36)
T ss_dssp GS-HHHHHHHHSS-HHHHH
T ss_pred CcCHHHHHHHHCCCHHHHH
Confidence 7899999999999999984
No 12
>PF08861 DUF1828: Domain of unknown function DUF1828; InterPro: IPR014960 These proteins are functionally uncharacterised.
Probab=45.86 E-value=67 Score=20.84 Aligned_cols=40 Identities=30% Similarity=0.333 Sum_probs=34.5
Q ss_pred cHHHHHHHHHHHhhcCCCCCCCceeeeCcHHHHHHHHHhh
Q 040912 60 HPLFQDLLNMAEEEFGFDHPMGGLTIPCSEEYFVSLTSTL 99 (102)
Q Consensus 60 hP~F~~LL~~aeEEfG~~~~~G~L~IPC~~~~F~~vl~~l 99 (102)
.|.=+++|+..-..||+...+|.|.+.++.+.|-....++
T Consensus 44 s~~R~~~l~~il~~~gv~~~~~el~~~~~~~~~~~~~~~l 83 (90)
T PF08861_consen 44 SKKRKKILNSILNGFGVELDEGELFIKTSEENFPQAKHRL 83 (90)
T ss_pred chHHHHHHHHHHHHcCccccCCEEEEEeCHHHHHHHHHHH
Confidence 5777899999999999998889999999999988776654
No 13
>smart00153 VHP Villin headpiece domain.
Probab=45.59 E-value=12 Score=21.38 Aligned_cols=19 Identities=37% Similarity=0.697 Sum_probs=17.1
Q ss_pred ccCcHHHHHHHHHHHhhcC
Q 040912 57 YLNHPLFQDLLNMAEEEFG 75 (102)
Q Consensus 57 ~L~hP~F~~LL~~aeEEfG 75 (102)
||+.-.|+.++.++.+||-
T Consensus 1 yLsdeeF~~vfgmsr~eF~ 19 (36)
T smart00153 1 YLSDEDFEEVFGMTREEFY 19 (36)
T ss_pred CCCHHHHHHHHCCCHHHHH
Confidence 7889999999999999984
No 14
>PF11834 DUF3354: Domain of unknown function (DUF3354); InterPro: IPR021789 Potassium channels take part in important processes of higher plants, including opening and closing of stomatal pores and leaf movement. Inward rectifying potassium (K(+)in) channels play an important role in turgor regulation and ion uptake in higher plants. All of them comprise, from their N-terminal to their C-terminal ends: a short hydrophilic region, a hydrophobic region structurally analogous and partially homologous to the transmembrane domain of voltage-gated animal channels from the Shaker superfamily, a putative cyclic nucleotide-binding domain, and a conserved C-terminal KHA domain. Between these last two regions, some of them (AKT1, AKT2 and SKT1) contain an ankyrin-repeat domain with six repeats homologous to those of human erythrocyte ankyrin. This entry represents the KHA domain which is unique to plant K(+)in channels. The KHA domain contains two high-homology blocks enriched for hydrophobic and acidic residues, respectively. The KHA domain is essential for interaction of plant K(+)in channels. The KHA domain mediates tetramerization and/or stabilisation of the heteromers [, , ].
Probab=43.95 E-value=19 Score=23.28 Aligned_cols=24 Identities=38% Similarity=0.728 Sum_probs=18.9
Q ss_pred eeEEEEeecccCcHHHHHHHHHHHhhcCCC
Q 040912 48 RKRFVIPISYLNHPLFQDLLNMAEEEFGFD 77 (102)
Q Consensus 48 ~kRfvVp~~~L~hP~F~~LL~~aeEEfG~~ 77 (102)
.+=..+| -.+++||+.|++.||+.
T Consensus 19 GKvi~lP------~SleeLl~ia~~kfg~~ 42 (69)
T PF11834_consen 19 GKVIWLP------DSLEELLKIASEKFGFS 42 (69)
T ss_pred CEEEEcC------ccHHHHHHHHHHHhCCC
Confidence 4555555 35899999999999985
No 15
>PF12058 DUF3539: Protein of unknown function (DUF3539); InterPro: IPR021926 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 90 amino acids in length. This protein has a conserved NHP sequence motif. ; PDB: 3N5B_B 2XKO_C 2XG8_F.
Probab=41.40 E-value=5.1 Score=27.48 Aligned_cols=11 Identities=64% Similarity=1.071 Sum_probs=8.0
Q ss_pred cccCcHHHHHH
Q 040912 56 SYLNHPLFQDL 66 (102)
Q Consensus 56 ~~L~hP~F~~L 66 (102)
.|||||.|.-|
T Consensus 4 ~YLNHPtFGlL 14 (88)
T PF12058_consen 4 TYLNHPTFGLL 14 (88)
T ss_dssp -EEEETTTEEE
T ss_pred ccccCCccchh
Confidence 58999988544
No 16
>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=39.87 E-value=88 Score=19.07 Aligned_cols=54 Identities=28% Similarity=0.365 Sum_probs=36.8
Q ss_pred EEeeCCceeEEEEeecccCcHHHHHHHHHHHhhcCCC---------CCCC-ceeeeCcHHHHHHHHHhh
Q 040912 41 IYVGEGYRKRFVIPISYLNHPLFQDLLNMAEEEFGFD---------HPMG-GLTIPCSEEYFVSLTSTL 99 (102)
Q Consensus 41 VyVG~~e~kRfvVp~~~L~hP~F~~LL~~aeEEfG~~---------~~~G-~L~IPC~~~~F~~vl~~l 99 (102)
++-++ +.+||.+|. .++.|.+|..+-.+.|+.. -++| .++|.++ ++|+..+...
T Consensus 5 ~~~~~-~~~~~~~~~---~~~s~~~L~~~i~~~~~~~~~~~~l~y~D~e~d~v~l~sd-~Dl~~a~~~~ 68 (81)
T cd05992 5 VKYGG-EIRRFVVVS---RSISFEDLRSKIAEKFGLDAVSFKLKYPDEDGDLVTISSD-EDLEEAIEEA 68 (81)
T ss_pred EEecC-CCEEEEEec---CCCCHHHHHHHHHHHhCCCCCcEEEEeeCCCCCEEEeCCH-HHHHHHHHHH
Confidence 44444 589999998 7888999999988888874 1123 3555555 5666666554
No 17
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised. This family is found in bacteria. This presumed domain is typically between 170 to 303 amino acids in length. The N-terminal half of this family is a BTB-like domain.
Probab=39.29 E-value=47 Score=27.41 Aligned_cols=50 Identities=16% Similarity=0.319 Sum_probs=38.0
Q ss_pred ceeEEEEeecccCc--HHHHHHHHH---HHhhcCCCCCCCceeeeCcHHHHHHHHHhhh
Q 040912 47 YRKRFVIPISYLNH--PLFQDLLNM---AEEEFGFDHPMGGLTIPCSEEYFVSLTSTLN 100 (102)
Q Consensus 47 e~kRfvVp~~~L~h--P~F~~LL~~---aeEEfG~~~~~G~L~IPC~~~~F~~vl~~l~ 100 (102)
..+=|.-|.+.|-. .-|++.|.. +.++.. +=.|.+-||+..|+.++..++
T Consensus 12 ~~rdF~C~~~lL~~~M~YF~~~l~~~~~~~~~~~----~idisVhCDv~iF~WLm~yv~ 66 (317)
T PF11822_consen 12 EKRDFTCPRDLLVSEMRYFAEYLSRYINDSQRWE----EIDISVHCDVHIFEWLMRYVK 66 (317)
T ss_pred cceeeeccHHHHHHhhHHHHHHHhhcccccCcCC----CcceEEecChhHHHHHHHHhh
Confidence 46778888888854 559999976 444432 246999999999999998765
No 18
>PRK10308 3-methyl-adenine DNA glycosylase II; Provisional
Probab=37.50 E-value=1.4e+02 Score=23.71 Aligned_cols=63 Identities=19% Similarity=0.248 Sum_probs=42.0
Q ss_pred CceEEEEeeCCceeEEEEeecccCcHHHHHHHHHHHhhcCCCCC--------------CCceeeeCcHHHHHHHHHhh
Q 040912 36 KGHIAIYVGEGYRKRFVIPISYLNHPLFQDLLNMAEEEFGFDHP--------------MGGLTIPCSEEYFVSLTSTL 99 (102)
Q Consensus 36 kG~~aVyVG~~e~kRfvVp~~~L~hP~F~~LL~~aeEEfG~~~~--------------~G~L~IPC~~~~F~~vl~~l 99 (102)
.|+|.|.-.. +..++.|.++.-.-+....++.....-|+.+.+ .-+|++|...+-||-+++.|
T Consensus 45 ~~~~~v~~~~-~~~~l~~~~~~~~~~~~~~~~~~vrr~fdLd~d~~~i~~~L~~~~~~~~GlR~p~~~d~fE~lv~aI 121 (283)
T PRK10308 45 RGVVTVIPDI-ARHTLHINLSAGLEPVAAECLAKMSRLFDLQCNPQIVNGALGKLGAARPGLRLPGSVDAFEQGVRAI 121 (283)
T ss_pred cEEEEEEEcC-CCceEEEEEcCCccccHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCCcCCCCCCHHHHHHHHH
Confidence 4666666544 345566666653335555677777777776633 24699999999999998876
No 19
>cd06410 PB1_UP2 Uncharacterized protein 2. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=37.47 E-value=86 Score=21.26 Aligned_cols=54 Identities=19% Similarity=0.247 Sum_probs=35.8
Q ss_pred EEEEeeCCceeEEEEeecccCcHHHHHHHHHHHhhcCCCC-----------C-CCceeeeCcHHHHHHHHHh
Q 040912 39 IAIYVGEGYRKRFVIPISYLNHPLFQDLLNMAEEEFGFDH-----------P-MGGLTIPCSEEYFVSLTST 98 (102)
Q Consensus 39 ~aVyVG~~e~kRfvVp~~~L~hP~F~~LL~~aeEEfG~~~-----------~-~G~L~IPC~~~~F~~vl~~ 98 (102)
-.=|||. +.+-..|+-+ . .|.+|..+..+.++..+ + ++-+.|.||. +..+++..
T Consensus 16 ~l~Y~GG-~tr~i~V~r~-~---s~~el~~kl~~~~~~~~~~~lky~Lp~edld~Lisv~~De-Dl~~M~~e 81 (97)
T cd06410 16 QLRYVGG-ETRIVSVDRS-I---SFKELVSKLSELFGAGVVVTLKYQLPDEDLDALISVSNDE-DLKNMMEE 81 (97)
T ss_pred CEEEcCC-ceEEEEEcCC-C---CHHHHHHHHHHHhCCCCceEEEEEcCCCCcceeEEecCcH-HHHHHHHh
Confidence 3479997 5888888877 3 56777777777776653 1 3467788885 34444443
No 20
>PF11876 DUF3396: Protein of unknown function (DUF3396); InterPro: IPR021815 This family of proteins are functionally uncharacterised. This protein is found in bacteria and viruses. Proteins in this family are typically between 302 to 382 amino acids in length.
Probab=36.62 E-value=31 Score=26.27 Aligned_cols=40 Identities=25% Similarity=0.451 Sum_probs=31.6
Q ss_pred eeEEEEeecccCc-H-HHHHHHHHHHhhcCCCCCCCceeeeC
Q 040912 48 RKRFVIPISYLNH-P-LFQDLLNMAEEEFGFDHPMGGLTIPC 87 (102)
Q Consensus 48 ~kRfvVp~~~L~h-P-~F~~LL~~aeEEfG~~~~~G~L~IPC 87 (102)
-=+|.+|++||.. | .|++|+....+++.+.|.-+++.+-.
T Consensus 24 ~l~f~~P~~~l~~~~~~~~~l~~~~a~~L~~~~G~aGl~~~~ 65 (208)
T PF11876_consen 24 YLSFSLPLEWLEEGPGHFRALFLELAERLPPSHGYAGLAFNL 65 (208)
T ss_pred EEEEEeCHHHHhcCcHHHHHHHHHHHHHCCCCeEeeEEEEec
Confidence 4689999999987 2 49999999999987776656666543
No 21
>PF14317 YcxB: YcxB-like protein
Probab=32.39 E-value=98 Score=17.40 Aligned_cols=31 Identities=19% Similarity=0.426 Sum_probs=23.4
Q ss_pred CCceEEEEeeCCceeEEEEeecccCcHHHHHHH
Q 040912 35 PKGHIAIYVGEGYRKRFVIPISYLNHPLFQDLL 67 (102)
Q Consensus 35 pkG~~aVyVG~~e~kRfvVp~~~L~hP~F~~LL 67 (102)
-+.++-+|++. ..-++||.+.++.-...++.
T Consensus 28 ~~~~~~l~~~~--~~~~~iPk~~f~~~e~~~f~ 58 (62)
T PF14317_consen 28 TKDYFYLYLGK--NQAFIIPKRAFSEEEKEEFR 58 (62)
T ss_pred eCCEEEEEECC--CeEEEEEHHHCCHhHHHHHH
Confidence 46788889985 68999999999954444444
No 22
>PF06544 DUF1115: Protein of unknown function (DUF1115); InterPro: IPR010541 This entry represents the C terminus of several eukaryotic RWD domain-containing proteins of unknown function.
Probab=30.90 E-value=1.5e+02 Score=20.41 Aligned_cols=27 Identities=15% Similarity=0.241 Sum_probs=22.7
Q ss_pred EEEeecccCcHHHHHHHHHHHhhcCCC
Q 040912 51 FVIPISYLNHPLFQDLLNMAEEEFGFD 77 (102)
Q Consensus 51 fvVp~~~L~hP~F~~LL~~aeEEfG~~ 77 (102)
++-.+..|++|.-+--++.-++|++..
T Consensus 2 ~~~~I~~L~~p~~R~kI~~nA~ql~Lt 28 (128)
T PF06544_consen 2 YVHHIKSLSNPKKRFKIDKNAKQLHLT 28 (128)
T ss_pred EEEEeCcccCHHHHHHHHHHHHHhCCe
Confidence 355678899999999999999999764
No 23
>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium). The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte
Probab=30.68 E-value=1.6e+02 Score=19.24 Aligned_cols=48 Identities=23% Similarity=0.367 Sum_probs=32.8
Q ss_pred EEeeCCceeEEEEeecccCcHHHHHHHHHHHhhcCCCC-----------CCCceeeeCcHHHHH
Q 040912 41 IYVGEGYRKRFVIPISYLNHPLFQDLLNMAEEEFGFDH-----------PMGGLTIPCSEEYFV 93 (102)
Q Consensus 41 VyVG~~e~kRfvVp~~~L~hP~F~~LL~~aeEEfG~~~-----------~~G~L~IPC~~~~F~ 93 (102)
+..|+ +..||.+|.+- -|++|.++-.+-|+.+. +.....|.|+.+.=+
T Consensus 5 ~~~~~-d~~r~~l~~~~----~~~~L~~~i~~r~~~~~~~~f~LkY~Ddegd~v~ltsd~DL~e 63 (82)
T cd06407 5 ATYGE-EKIRFRLPPSW----GFTELKQEIAKRFKLDDMSAFDLKYLDDDEEWVLLTCDADLEE 63 (82)
T ss_pred EEeCC-eEEEEEcCCCC----CHHHHHHHHHHHhCCCCCCeeEEEEECCCCCeEEeecHHHHHH
Confidence 33455 58999998743 68888888888887752 123567788865443
No 24
>PF15387 DUF4611: Domain of unknown function (DUF4611)
Probab=30.12 E-value=43 Score=23.30 Aligned_cols=21 Identities=29% Similarity=0.520 Sum_probs=14.4
Q ss_pred CCCceeeeCc----HHHHHHHHHhh
Q 040912 79 PMGGLTIPCS----EEYFVSLTSTL 99 (102)
Q Consensus 79 ~~G~L~IPC~----~~~F~~vl~~l 99 (102)
+..-|++||+ .+-|+.+|+-+
T Consensus 11 q~q~lrv~ce~p~~~d~~q~LlsGv 35 (96)
T PF15387_consen 11 QPQRLRVPCEAPGDADPFQGLLSGV 35 (96)
T ss_pred CcceEEEeeecCCCcccHHHHHHHH
Confidence 4456899997 46777776543
No 25
>PF05194 UreE_C: UreE urease accessory protein, C-terminal domain; InterPro: IPR007864 Urease and other nickel metalloenzymes are synthesised as precursors devoid of the metalloenzyme active site. These precursors then undergo a complex post-translational maturation process that requires a number of accessory proteins. Members of this group are nickel-binding proteins required for urease metallocentre assembly []. They are believed to function as metallochaperones to deliver nickel to urease apoprotein [, ]. It has been shown by yeast two-hybrid analysis that UreE forms a dimeric complex with UreG in Helicobacter pylori []. The UreDFG-apoenzyme complex has also been shown to exist [, ] and is believed to be, with the addition of UreE, the assembly system for active urease []. The complexes, rather than the individual proteins, presumably bind to UreB via UreE/H recognition sites. The structure of Klebsiella aerogenes UreE reveals a unique two-domain architecture.The N-terminal domain is structurally related to a heat shock protein, while the C-terminal domain shows homology to the Atx1 copper metallochaperone [, ]. Significantly, the metal-binding sites in UreE and Atx1 are distinct in location and types of residues despite the relationship between these proteins and the mechanism for UreE activation of urease is proposed to be different from the thiol ligand exchange mechanism used by the copper metallochaperones. The C-terminal domain of this protein is the metal-binding region, which can bind up to six Ni molecules per dimer. Most members of this group contain a histidine-rich C-terminal motif that is involved in, but not solely responsible for, binding nickel ions in K. aerogenes UreE []. However, internal ligands, not the histidine residues at the C terminus, are necessary for UreE to assist in urease activation in K. aerogenes [], even though the truncated protein lacking the His-rich region binds two nickel ions instead of six. In H. pylori and some other organisms, the terminal histidine-rich binding sites are absent, but the internal histidine sites are present, and the latter probably function as nickel donors. Deletion analysis shows that this domain alone is sufficient for metal-binding and activation of urease [].; GO: 0016151 nickel ion binding, 0006461 protein complex assembly, 0019627 urea metabolic process; PDB: 3NXZ_B 3TJA_B 3LA0_B 3TJ9_B 3NY0_A 3L9Z_A 3TJ8_A 1EAR_A 1EB0_A 1GMU_B ....
Probab=28.39 E-value=1e+02 Score=19.94 Aligned_cols=27 Identities=19% Similarity=0.509 Sum_probs=17.7
Q ss_pred ceEEEEeeCCceeEEEEeecccCcHHHHHHHHHH
Q 040912 37 GHIAIYVGEGYRKRFVIPISYLNHPLFQDLLNMA 70 (102)
Q Consensus 37 G~~aVyVG~~e~kRfvVp~~~L~hP~F~~LL~~a 70 (102)
-|+|++++++ +..|| ..+.+.+||++-
T Consensus 25 rH~p~~i~~~---~l~v~----~d~~l~~~L~~l 51 (87)
T PF05194_consen 25 RHWPLFIEED---ELYVP----YDHVLEELLRKL 51 (87)
T ss_dssp TT--EEEETT---EEEEE------HHHHHHHHHT
T ss_pred CccceEEcCC---EEEec----CcHHHHHHHHHC
Confidence 4789999974 88888 566777888773
No 26
>COG1759 5-formaminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate synthetase (purine biosynthesis) [Nucleotide transport and metabolism]
Probab=28.23 E-value=25 Score=29.53 Aligned_cols=27 Identities=30% Similarity=0.592 Sum_probs=19.0
Q ss_pred cCCCCCCCceEEEEeeCC-ceeEEEEee
Q 040912 29 NNTNNVPKGHIAIYVGEG-YRKRFVIPI 55 (102)
Q Consensus 29 ~~~~~vpkG~~aVyVG~~-e~kRfvVp~ 55 (102)
....-+|.|-|++|||-+ --..|.||+
T Consensus 85 ~n~I~IP~gSfv~Y~G~d~ie~~~~vP~ 112 (361)
T COG1759 85 LNAIFIPHGSFVAYVGYDGIENEFEVPM 112 (361)
T ss_pred cCeEEecCCceEEEecchhhhhcccCcc
Confidence 344568999999999963 134566664
No 27
>cd04751 Commd3 COMM_Domain containing protein 3. The COMM Domain is found at the C-terminus of a variety of proteins; presumably all COMM_Domain containing proteins are located in the nucleus and the COMM domain plays a role in protein-protein interactions. Several family members have been shown to bind and inhibit NF-kappaB.
Probab=27.91 E-value=65 Score=21.49 Aligned_cols=20 Identities=20% Similarity=0.431 Sum_probs=18.2
Q ss_pred CceeeeCcHHHHHHHHHhhh
Q 040912 81 GGLTIPCSEEYFVSLTSTLN 100 (102)
Q Consensus 81 G~L~IPC~~~~F~~vl~~l~ 100 (102)
..+.+-|+.+.|++++..|+
T Consensus 65 ~~i~f~c~~e~L~~Li~~Lk 84 (95)
T cd04751 65 PDINFTCTLEQLQDLVNKLK 84 (95)
T ss_pred ceEEEEeCHHHHHHHHHHHH
Confidence 48999999999999999875
No 28
>COG4862 MecA Negative regulator of genetic competence, sporulation and motility [Posttranslational modification, protein turnover, chaperones / Signal transduction mechanisms / Cell motility and secretion]
Probab=27.61 E-value=46 Score=26.33 Aligned_cols=26 Identities=27% Similarity=0.367 Sum_probs=22.7
Q ss_pred cHHHHHHHHHHHhhcCCCCCCCceeee
Q 040912 60 HPLFQDLLNMAEEEFGFDHPMGGLTIP 86 (102)
Q Consensus 60 hP~F~~LL~~aeEEfG~~~~~G~L~IP 86 (102)
|-+|-++++.+.+|-+|. .+|||.|-
T Consensus 38 EE~F~~mMdEl~~ee~F~-~~GpL~iq 63 (224)
T COG4862 38 EELFYEMMDELNLEEDFK-DEGPLWIQ 63 (224)
T ss_pred HHHHHHHHHhcCCccccc-cCCceEEE
Confidence 678999999999999998 57999874
No 29
>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=26.30 E-value=3e+02 Score=22.17 Aligned_cols=54 Identities=17% Similarity=0.212 Sum_probs=40.6
Q ss_pred CCceEEEEeeCCceeEEEEeecccCcHHHHHHHHHHHhhcCCCCCCCceeee--CcHHHHHHHHHhhhc
Q 040912 35 PKGHIAIYVGEGYRKRFVIPISYLNHPLFQDLLNMAEEEFGFDHPMGGLTIP--CSEEYFVSLTSTLNC 101 (102)
Q Consensus 35 pkG~~aVyVG~~e~kRfvVp~~~L~hP~F~~LL~~aeEEfG~~~~~G~L~IP--C~~~~F~~vl~~l~~ 101 (102)
+.+...|+||++. ..-.....-.++.||+|++. -.+.+| ++.++|...+..+|.
T Consensus 32 ~P~LaiI~vg~d~-----------as~~Yv~~k~k~a~~~Gi~~--~~~~l~~~~t~~el~~~I~~lN~ 87 (284)
T PRK14193 32 TPGLGTVLVGDDP-----------GSQAYVRGKHRDCAEVGITS--IRRDLPADATQEELNAVIDELNA 87 (284)
T ss_pred CceEEEEEeCCCH-----------HHHHHHHHHHHHHHHcCCEE--EEEECCCCCCHHHHHHHHHHHhC
Confidence 4488889999731 12346677788899999974 357778 889999999988864
No 30
>PRK02797 4-alpha-L-fucosyltransferase; Provisional
Probab=25.86 E-value=2e+02 Score=23.93 Aligned_cols=45 Identities=20% Similarity=0.470 Sum_probs=33.8
Q ss_pred CCCCceEEEEeeCC-------------------ceeEEEEeecc--cCcHHHHHHHHHHHhhcCCC
Q 040912 33 NVPKGHIAIYVGEG-------------------YRKRFVIPISY--LNHPLFQDLLNMAEEEFGFD 77 (102)
Q Consensus 33 ~vpkG~~aVyVG~~-------------------e~kRfvVp~~~--L~hP~F~~LL~~aeEEfG~~ 77 (102)
..+++.+.|.||.+ +.-|+.||.+| =|.--.++..+.+.+-||-+
T Consensus 141 ~~~~~~~tIlvGNSgd~SN~Hie~L~~l~~~~~~~v~ii~PlsYp~gn~~Yi~~V~~~~~~lF~~~ 206 (322)
T PRK02797 141 RQRAGKMTILVGNSGDRSNRHIEALRALHQQFGDNVKIIVPMGYPANNQAYIEEVRQAGLALFGAE 206 (322)
T ss_pred ccCCCceEEEEeCCCCCcccHHHHHHHHHHHhCCCeEEEEECCcCCCCHHHHHHHHHHHHHhcCcc
Confidence 34778899999962 23599999999 56666777777778888843
No 31
>PF07429 Glyco_transf_56: 4-alpha-L-fucosyltransferase glycosyl transferase group 56; InterPro: IPR009993 This family contains the bacterial enzyme 4-alpha-L-fucosyltransferase (Fuc4NAc transferase) (approximately 360 residues long). This catalyses the synthesis of Fuc4NAc-ManNAcA-GlcNAc-PP-Und (lipid III) as part of the biosynthetic pathway of enterobacterial common antigen (ECA), a polysaccharide comprised of the trisaccharide repeat unit Fuc4NAc-ManNAcA-GlcNAc [].; GO: 0008417 fucosyltransferase activity, 0009246 enterobacterial common antigen biosynthetic process, 0009276 Gram-negative-bacterium-type cell wall
Probab=25.17 E-value=2e+02 Score=24.33 Aligned_cols=45 Identities=29% Similarity=0.589 Sum_probs=35.0
Q ss_pred CCCCceEEEEeeCC-------------------ceeEEEEeeccc--CcHHHHHHHHHHHhhcCCC
Q 040912 33 NVPKGHIAIYVGEG-------------------YRKRFVIPISYL--NHPLFQDLLNMAEEEFGFD 77 (102)
Q Consensus 33 ~vpkG~~aVyVG~~-------------------e~kRfvVp~~~L--~hP~F~~LL~~aeEEfG~~ 77 (102)
..++|-+.|.||.+ +..|++||.+|= |.--..++.+.+++-||-+
T Consensus 180 ~~~~~~ltILvGNSgd~sNnHieaL~~L~~~~~~~~kIivPLsYg~~n~~Yi~~V~~~~~~lF~~~ 245 (360)
T PF07429_consen 180 KKNKGKLTILVGNSGDPSNNHIEALEALKQQFGDDVKIIVPLSYGANNQAYIQQVIQAGKELFGAE 245 (360)
T ss_pred cCCCCceEEEEcCCCCCCccHHHHHHHHHHhcCCCeEEEEECCCCCchHHHHHHHHHHHHHhcCcc
Confidence 34678999999962 368999999996 4567888888888888853
No 32
>PRK13277 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase-like protein; Provisional
Probab=24.89 E-value=21 Score=29.95 Aligned_cols=26 Identities=35% Similarity=0.574 Sum_probs=19.6
Q ss_pred cCCCCCCCceEEEEeeCCcee-EEEEe
Q 040912 29 NNTNNVPKGHIAIYVGEGYRK-RFVIP 54 (102)
Q Consensus 29 ~~~~~vpkG~~aVyVG~~e~k-RfvVp 54 (102)
....-||.|-|++|||-+.-. .|-||
T Consensus 85 ~n~i~iPh~sf~~y~g~~~ie~~~~vp 111 (366)
T PRK13277 85 ENAIFVPNRSFAVYVGYDAIENEFKVP 111 (366)
T ss_pred CCeEEecCCCeEEEecHHHHhhcCCCC
Confidence 345678999999999974223 68888
No 33
>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein.
Probab=24.06 E-value=87 Score=23.79 Aligned_cols=41 Identities=15% Similarity=0.213 Sum_probs=28.0
Q ss_pred eEEEEeecccCcHHHHHHHHHHHhhcCCCCCCCceeeeCcHH
Q 040912 49 KRFVIPISYLNHPLFQDLLNMAEEEFGFDHPMGGLTIPCSEE 90 (102)
Q Consensus 49 kRfvVp~~~L~hP~F~~LL~~aeEEfG~~~~~G~L~IPC~~~ 90 (102)
.+.++..+-. .-.++.|.+++++-.|....+-.+++|+...
T Consensus 33 ~g~I~d~~~~-~~~l~~l~~~a~~~~g~~~~~vvisVP~~~~ 73 (239)
T TIGR02529 33 DGIVVDFLGA-VEIVRRLKDTLEQKLGIELTHAATAIPPGTI 73 (239)
T ss_pred CCeEEEhHHH-HHHHHHHHHHHHHHhCCCcCcEEEEECCCCC
Confidence 3444444333 2358889999988888865567899998654
No 34
>PF08948 DUF1859: Domain of unknown function (DUF1859); InterPro: IPR015043 This entry is represented by Bacteriophage PRD1, P5. This protein has no known function though it is sometimes found in the N terminus of bacteriophage spike proteins []. ; PDB: 1W8X_N.
Probab=23.26 E-value=27 Score=25.05 Aligned_cols=28 Identities=32% Similarity=0.647 Sum_probs=8.0
Q ss_pred CCceEEEEeeCCceeEEE----------EeecccCcHHHH
Q 040912 35 PKGHIAIYVGEGYRKRFV----------IPISYLNHPLFQ 64 (102)
Q Consensus 35 pkG~~aVyVG~~e~kRfv----------Vp~~~L~hP~F~ 64 (102)
..||+|+.|-. +-+|+ +|+-+||.|.-+
T Consensus 86 ~QGYfPlL~~~--~~KFv~~~~~~GKks~P~~FlNF~IA~ 123 (126)
T PF08948_consen 86 KQGYFPLLVPG--RAKFVVRHTGSGKKSVPMFFLNFTIAQ 123 (126)
T ss_dssp --SS--EEE----SSSSEEEEEEEESS----S--------
T ss_pred Ccccceeeccc--hhhhhhhhccCCCcceeeEEEeceeee
Confidence 47999999963 44454 688888887643
No 35
>PF12062 HSNSD: heparan sulfate-N-deacetylase; InterPro: IPR021930 This family of proteins is are heparan sulphate N-deacetylase enzymes. This protein is found in eukaryotes. This enzyme is often found associated with PF00685 from PFAM. ; GO: 0015016 [heparan sulfate]-glucosamine N-sulfotransferase activity, 0016787 hydrolase activity
Probab=23.07 E-value=68 Score=28.05 Aligned_cols=41 Identities=27% Similarity=0.481 Sum_probs=35.1
Q ss_pred CCceEEEEeeCCceeEEEEee-----cccCcHH-HHHHHHHHHhhcCC
Q 040912 35 PKGHIAIYVGEGYRKRFVIPI-----SYLNHPL-FQDLLNMAEEEFGF 76 (102)
Q Consensus 35 pkG~~aVyVG~~e~kRfvVp~-----~~L~hP~-F~~LL~~aeEEfG~ 76 (102)
-||.+|+++-. ++-||-|-+ .|+|-+. -++||++=-.|||-
T Consensus 95 ~kg~lP~LT~~-~kGRy~lII~ENl~kYlnld~wNR~LLdkYC~ey~V 141 (487)
T PF12062_consen 95 GKGDLPVLTDN-DKGRYSLIIFENLLKYLNLDSWNRELLDKYCREYGV 141 (487)
T ss_pred CCCCCCccccC-CCCcEEEEEehhHHHHcCChHHHHHHHHHHhHccCc
Confidence 36899999966 478998887 8999999 89999999888864
No 36
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=22.49 E-value=3.9e+02 Score=21.51 Aligned_cols=54 Identities=24% Similarity=0.239 Sum_probs=41.0
Q ss_pred CCceEEEEeeCCceeEEEEeecccCcHHHHHHHHHHHhhcCCCCCCCceeee--CcHHHHHHHHHhhhc
Q 040912 35 PKGHIAIYVGEGYRKRFVIPISYLNHPLFQDLLNMAEEEFGFDHPMGGLTIP--CSEEYFVSLTSTLNC 101 (102)
Q Consensus 35 pkG~~aVyVG~~e~kRfvVp~~~L~hP~F~~LL~~aeEEfG~~~~~G~L~IP--C~~~~F~~vl~~l~~ 101 (102)
+.+...|.||++ . ..-....--.++.+|.|+.. -.+.+| ++.++|++.+..+|.
T Consensus 32 ~p~Laii~vg~d-~----------as~~Yv~~k~k~~~~~Gi~~--~~~~l~~~~~~~~l~~~I~~lN~ 87 (285)
T PRK14189 32 QPGLAVILVGDN-P----------ASQVYVRNKVKACEDNGFHS--LKDRYPADLSEAELLARIDELNR 87 (285)
T ss_pred CCeEEEEEeCCC-c----------hHHHHHHHHHHHHHHcCCEE--EEEECCCCCCHHHHHHHHHHHcC
Confidence 448889999973 1 23346667778899999974 367888 889999999998875
No 37
>COG3769 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=21.91 E-value=88 Score=25.35 Aligned_cols=42 Identities=31% Similarity=0.403 Sum_probs=28.6
Q ss_pred CCCCCceEEEEeeCCceeEEEEeecc--cCc--HHHHHHHHHHHhhcCCC
Q 040912 32 NNVPKGHIAIYVGEGYRKRFVIPISY--LNH--PLFQDLLNMAEEEFGFD 77 (102)
Q Consensus 32 ~~vpkG~~aVyVG~~e~kRfvVp~~~--L~h--P~F~~LL~~aeEEfG~~ 77 (102)
.-.|+|++|.-++. |-++-++| |.- -.++++|++-||-|||.
T Consensus 75 I~~p~~~~~~~~~~----r~~~g~~~~elg~~l~~ire~l~kLee~~g~~ 120 (274)
T COG3769 75 IYLPKGWFPFDGKP----REISGISHIELGKVLEKIREKLDKLEEHFGFT 120 (274)
T ss_pred EEecccccccCCCC----ceecceEeeehhhhHHHHHHHHHHHHHHhCee
Confidence 45689999988764 22222222 222 34899999999999985
No 38
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....
Probab=21.06 E-value=2.2e+02 Score=17.68 Aligned_cols=54 Identities=26% Similarity=0.506 Sum_probs=36.5
Q ss_pred EEEEeeCCceeEEEEeeccc--CcHHHHHHHHHHHhhcCCCCCCC--ceeee-CcHHHHHHHHHhh
Q 040912 39 IAIYVGEGYRKRFVIPISYL--NHPLFQDLLNMAEEEFGFDHPMG--GLTIP-CSEEYFVSLTSTL 99 (102)
Q Consensus 39 ~aVyVG~~e~kRfvVp~~~L--~hP~F~~LL~~aeEEfG~~~~~G--~L~IP-C~~~~F~~vl~~l 99 (102)
+.+.||+ .++|-+.-..| ..|.|+.++... +.. +.+ .+.++ |+.+.|+.++..+
T Consensus 13 ~~i~v~d--~~~~~vhk~iL~~~S~~F~~~~~~~----~~~-~~~~~~i~~~~~~~~~~~~~l~~~ 71 (111)
T PF00651_consen 13 VTIRVGD--GKTFYVHKNILAARSPYFRNLFEGS----KFK-ESTVPEISLPDVSPEAFEAFLEYM 71 (111)
T ss_dssp EEEEETT--TEEEEE-HHHHHHHBHHHHHHHTTT----TST-TSSEEEEEETTSCHHHHHHHHHHH
T ss_pred EEEEECC--CEEEeechhhhhccchhhhhccccc----ccc-cccccccccccccccccccccccc
Confidence 3556664 57888888877 458999999888 211 123 35555 7899999988765
No 39
>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....
Probab=20.74 E-value=2.1e+02 Score=17.39 Aligned_cols=53 Identities=25% Similarity=0.335 Sum_probs=33.0
Q ss_pred EEeeCCceeE-EEEeecccCcHHHHHHHHHHHhhcCCC---------CCCC-ceeeeCcHHHHHHHHHhh
Q 040912 41 IYVGEGYRKR-FVIPISYLNHPLFQDLLNMAEEEFGFD---------HPMG-GLTIPCSEEYFVSLTSTL 99 (102)
Q Consensus 41 VyVG~~e~kR-fvVp~~~L~hP~F~~LL~~aeEEfG~~---------~~~G-~L~IPC~~~~F~~vl~~l 99 (102)
++-++ +.+| +.+| ..+.|.+|..+.++.||.. ..+| .++|.++ +.|+..+...
T Consensus 6 ~~~~~-~~~~~~~~~----~~~s~~~L~~~i~~~~~~~~~~~~l~Y~D~dgD~V~i~sd-~Dl~~a~~~~ 69 (84)
T PF00564_consen 6 VRYGG-DIRRIISLP----SDVSFDDLRSKIREKFGLLDEDFQLKYKDEDGDLVTISSD-EDLQEAIEQA 69 (84)
T ss_dssp EEETT-EEEEEEEEC----STSHHHHHHHHHHHHHTTSTSSEEEEEEETTSSEEEESSH-HHHHHHHHHH
T ss_pred EEECC-eeEEEEEcC----CCCCHHHHHHHHHHHhCCCCccEEEEeeCCCCCEEEeCCH-HHHHHHHHHH
Confidence 34454 3555 4444 4579999999999999983 0134 4667766 4555555443
No 40
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=20.45 E-value=4.6e+02 Score=21.09 Aligned_cols=54 Identities=20% Similarity=0.199 Sum_probs=40.1
Q ss_pred CCceEEEEeeCCceeEEEEeecccCcHHHHHHHHHHHhhcCCCCCCCceeee--CcHHHHHHHHHhhhc
Q 040912 35 PKGHIAIYVGEGYRKRFVIPISYLNHPLFQDLLNMAEEEFGFDHPMGGLTIP--CSEEYFVSLTSTLNC 101 (102)
Q Consensus 35 pkG~~aVyVG~~e~kRfvVp~~~L~hP~F~~LL~~aeEEfG~~~~~G~L~IP--C~~~~F~~vl~~l~~ 101 (102)
..+...|.||++. ..-.....-.++.+++|++. -.+.+| ++.++|...+..||.
T Consensus 30 ~P~Laii~vg~d~-----------as~~Yv~~k~k~a~~~Gi~~--~~~~l~~~~t~~~l~~~I~~lN~ 85 (282)
T PRK14166 30 ESCLAVILVGDNP-----------ASQTYVKSKAKACEECGIKS--LVYHLNENTTQNELLALINTLNH 85 (282)
T ss_pred CceEEEEEeCCCH-----------HHHHHHHHHHHHHHHcCCEE--EEEECCCCCCHHHHHHHHHHHhC
Confidence 4488899999731 12345666778889999974 367787 888999999988864
No 41
>cd06080 MUM1_like Mutated melanoma-associated antigen 1 (MUM-1) is a melanoma-associated antigen (MAA). MUM-1 belongs to the mutated or aberrantly expressed type of MAAs, along with antigens such as CDK4, beta-catenin, gp100-in4, p15, and N-acetylglucosaminyltransferase V. It is highly expressed in several types of human cancers. The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding, proteins that function as transcription factors regulating a variety of developmental processes.
Probab=20.30 E-value=1.6e+02 Score=19.46 Aligned_cols=42 Identities=21% Similarity=0.285 Sum_probs=34.5
Q ss_pred CCceEEEEeeCC---ceeEEEEeecccCcHHH---HHHHHHHHhhcCC
Q 040912 35 PKGHIAIYVGEG---YRKRFVIPISYLNHPLF---QDLLNMAEEEFGF 76 (102)
Q Consensus 35 pkG~~aVyVG~~---e~kRfvVp~~~L~hP~F---~~LL~~aeEEfG~ 76 (102)
++-+.+.+.|+. ...++-+..-|+.|+.+ +.|+++|.|.|.-
T Consensus 28 ~~k~~V~FfG~~~~~a~~~~~~l~p~~~~~~~~ek~~~~~k~ke~~~~ 75 (80)
T cd06080 28 KQKARVNFIGDNMQSEKKGIRVVKRWLKHFDCTEKQKLTNKAKESYEQ 75 (80)
T ss_pred CCEEEEEEeCCCCceeccchhhcccccccHHHHHHHHHHHHHHHHHHH
Confidence 667888888974 25788888999999999 5899999998863
No 42
>PF02641 DUF190: Uncharacterized ACR, COG1993; InterPro: IPR003793 This is an uncharacterised domain found in proteins of unknown function.; PDB: 2DCL_C 1O51_A.
Probab=20.04 E-value=2.1e+02 Score=19.02 Aligned_cols=30 Identities=37% Similarity=0.626 Sum_probs=21.6
Q ss_pred eEEEEeeCCceeEEEEeecccCcHHHHHHHHHHHhhcCC
Q 040912 38 HIAIYVGEGYRKRFVIPISYLNHPLFQDLLNMAEEEFGF 76 (102)
Q Consensus 38 ~~aVyVG~~e~kRfvVp~~~L~hP~F~~LL~~aeEEfG~ 76 (102)
.+.+|++++ .| |=+.|+...|++.+.+ .|.
T Consensus 5 ~Lriy~~e~--~~------~~g~~l~~~ll~~~~~-~gi 34 (101)
T PF02641_consen 5 LLRIYLSES--DR------WGGKPLYEWLLERARE-AGI 34 (101)
T ss_dssp EEEEEEETT---E------ETTEEHHHHHHHHHHH-TT-
T ss_pred EEEEEEcCc--cc------cCceEHHHHHHHHHHH-CCC
Confidence 367999974 23 4678999999999976 443
Done!