Query 040912
Match_columns 102
No_of_seqs 112 out of 642
Neff 4.8
Searched_HMMs 29240
Date Mon Mar 25 21:13:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040912.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040912hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1und_A Advillin, P92; actin bi 58.4 3.2 0.00011 23.2 0.8 20 56-75 1-20 (37)
2 1y74_B MLIN-2/CASK, peripheral 49.6 6.4 0.00022 22.4 1.2 20 56-75 26-49 (50)
3 2xko_C PIPX, global nitrogen r 42.6 3.1 0.00011 27.6 -1.1 11 56-66 5-15 (89)
4 2al3_A TUG long isoform; TUG U 40.4 30 0.001 22.6 3.5 42 40-84 12-53 (90)
5 2vkp_A BTB/POZ domain-containi 39.7 52 0.0018 19.9 4.4 56 39-99 11-70 (109)
6 1yu8_X Villin; alpha helix, 3- 34.5 12 0.00042 23.3 0.8 20 56-75 31-50 (67)
7 2vpk_A Myoneurin; transcriptio 33.1 52 0.0018 20.3 3.7 50 39-99 25-79 (116)
8 1qzp_A Dematin; villin headpie 30.9 11 0.00037 23.5 0.1 20 56-75 32-51 (68)
9 3n5b_B ASR0485 protein; PII, P 30.5 6.5 0.00022 27.0 -1.1 26 32-66 13-38 (112)
10 1ujs_A Actin-binding LIM prote 30.0 16 0.00053 23.9 0.7 20 56-75 46-65 (88)
11 2nz0_B Potassium voltage-gated 29.7 53 0.0018 22.5 3.5 61 35-100 33-94 (140)
12 2k6m_S Supervillin; SVHP, HP, 29.0 13 0.00045 23.0 0.3 20 56-75 31-50 (67)
13 1z3x_A Putative cytidyltransfe 28.8 1.9 6.5E-05 33.0 -4.4 30 31-63 207-236 (238)
14 1s1g_A Potassium voltage-gated 27.9 39 0.0013 22.6 2.5 61 35-100 11-72 (124)
15 2ccq_A P97, peptide N-glycanas 26.9 54 0.0018 21.2 3.0 43 58-100 46-96 (99)
16 1y6i_A Mg-chelatase cofactor G 26.7 5 0.00017 30.5 -2.4 30 32-64 200-229 (233)
17 3pmi_A PWWP domain-containing 26.1 21 0.00073 25.1 0.9 29 47-75 47-78 (134)
18 1r29_A B-cell lymphoma 6 prote 25.6 70 0.0024 20.1 3.4 53 39-99 32-88 (127)
19 3qli_A Coenzyme A transferase; 25.3 38 0.0013 27.7 2.4 45 31-76 401-454 (455)
20 2lkt_A Retinoic acid receptor 24.7 33 0.0011 22.4 1.6 9 38-46 23-31 (125)
21 1zav_U 50S ribosomal protein L 23.8 47 0.0016 17.4 1.8 13 63-75 18-30 (30)
22 3ga1_A Nucleus accumbens-assoc 23.1 1E+02 0.0036 19.4 3.9 50 39-99 36-89 (129)
23 3ezo_A Malonyl COA-acyl carrie 22.6 49 0.0017 24.9 2.4 40 37-77 10-49 (318)
24 3drz_A BTB/POZ domain-containi 21.9 1.6E+02 0.0054 18.6 5.4 60 36-100 5-69 (107)
25 1wy3_A Villin; structural prot 21.5 29 0.00098 18.9 0.7 17 58-74 1-17 (35)
26 1w8x_N Protein P31, protein C, 20.4 18 0.00062 24.9 -0.4 28 35-64 86-123 (126)
No 1
>1und_A Advillin, P92; actin binding, F-actin binding, cytoskeleton, headpiece subdomain; NMR {Homo sapiens} SCOP: a.14.1.1
Probab=58.39 E-value=3.2 Score=23.18 Aligned_cols=20 Identities=20% Similarity=0.527 Sum_probs=17.5
Q ss_pred cccCcHHHHHHHHHHHhhcC
Q 040912 56 SYLNHPLFQDLLNMAEEEFG 75 (102)
Q Consensus 56 ~~L~hP~F~~LL~~aeEEfG 75 (102)
.||+.-.|++++.++.+||-
T Consensus 1 ~yLsd~dF~~vFgmsr~eF~ 20 (37)
T 1und_A 1 XYLSEQDFVSVFGITRGQFA 20 (37)
T ss_dssp -CCCHHHHHHHHSSCHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHH
Confidence 48999999999999999983
No 2
>1y74_B MLIN-2/CASK, peripheral plasma membrane protein CASK; L27 domain, scaffold protein, protein assembly, cell polarity, transport protein; NMR {Mus musculus} SCOP: a.194.1.1 PDB: 1zl8_B
Probab=49.63 E-value=6.4 Score=22.43 Aligned_cols=20 Identities=35% Similarity=0.572 Sum_probs=15.4
Q ss_pred cccCcHHHHHHHHH----HHhhcC
Q 040912 56 SYLNHPLFQDLLNM----AEEEFG 75 (102)
Q Consensus 56 ~~L~hP~F~~LL~~----aeEEfG 75 (102)
..|+.|.|++||.- |.++||
T Consensus 26 ~lL~~PHfqaLl~ahD~Va~~~y~ 49 (50)
T 1y74_B 26 RILTQPHFMALLQTHDVVAHEVYS 49 (50)
T ss_dssp HHHHSHHHHHHHHHHHHHHHHHHT
T ss_pred HHHcCHHHHHHHHHHHHHHHHHhc
Confidence 56889999999975 556664
No 3
>2xko_C PIPX, global nitrogen regulator; transcription, nitrogen assimilation, CRP/FNR superfamily, 2-oxoglutarate, global nitrogen controller; HET: AKG; 2.25A {Synechococcus elongatus} PDB: 2xg8_D*
Probab=42.64 E-value=3.1 Score=27.59 Aligned_cols=11 Identities=64% Similarity=1.053 Sum_probs=8.6
Q ss_pred cccCcHHHHHH
Q 040912 56 SYLNHPLFQDL 66 (102)
Q Consensus 56 ~~L~hP~F~~L 66 (102)
.|||||.|.-|
T Consensus 5 ~YLNHPtFGlL 15 (89)
T 2xko_C 5 NYLNHPTFGLL 15 (89)
T ss_dssp CEEEETTTEEE
T ss_pred ccccCCccchh
Confidence 59999998544
No 4
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=40.36 E-value=30 Score=22.60 Aligned_cols=42 Identities=10% Similarity=0.156 Sum_probs=29.7
Q ss_pred EEEeeCCceeEEEEeecccCcHHHHHHHHHHHhhcCCCCCCCcee
Q 040912 40 AIYVGEGYRKRFVIPISYLNHPLFQDLLNMAEEEFGFDHPMGGLT 84 (102)
Q Consensus 40 aVyVG~~e~kRfvVp~~~L~hP~F~~LL~~aeEEfG~~~~~G~L~ 84 (102)
.+++.. ..+|+.|++. ..-.+.++|++|=+.||++.++..|.
T Consensus 12 v~Vl~~-n~rr~~VKvt--p~t~L~~VL~eaC~K~gl~~~~~~Lk 53 (90)
T 2al3_A 12 VSVLAP-NGRRHTVKVT--PSTVLLQVLEDTCRRQDFNPSEYDLK 53 (90)
T ss_dssp EEEECT-TSCEEEECCC--TTSBHHHHHHHHHHHTTCCGGGCEEE
T ss_pred EEEEcC-CCcEEEEEEC--CCCCHHHHHHHHHHHhCCChhhCeEE
Confidence 334443 3789999883 34468899999999999986555553
No 5
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens}
Probab=39.75 E-value=52 Score=19.95 Aligned_cols=56 Identities=16% Similarity=0.208 Sum_probs=38.3
Q ss_pred EEEEeeCC-ceeEEEEeeccc--CcHHHHHHHHHHHhhcCCCCCCCceeee-CcHHHHHHHHHhh
Q 040912 39 IAIYVGEG-YRKRFVIPISYL--NHPLFQDLLNMAEEEFGFDHPMGGLTIP-CSEEYFVSLTSTL 99 (102)
Q Consensus 39 ~aVyVG~~-e~kRfvVp~~~L--~hP~F~~LL~~aeEEfG~~~~~G~L~IP-C~~~~F~~vl~~l 99 (102)
+.+.||++ +.++|-+.-..| ..|.|++++...-.|- + ..|.|| .+.+.|+.++..+
T Consensus 11 v~l~v~~~~~~~~~~~Hk~iLa~~S~~F~~~f~~~~~e~----~-~~i~l~~~~~~~f~~~l~~i 70 (109)
T 2vkp_A 11 VHFVVGPPGATRTVPAHKYVLAVGSSVFYAMFYGDLAEV----K-SEIHIPDVEPAAFLILLKYM 70 (109)
T ss_dssp EEEEESSTTSCEEEEECHHHHHHHCHHHHHHHC----------C-CEEEETTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCcEEEEeeHHHHHHcCHHHHHHhcCCcccC----C-CeEEeCCCCHHHHHHHHHHH
Confidence 45666652 358899988888 5899999997543331 2 578887 5889999998765
No 6
>1yu8_X Villin; alpha helix, 3-10 helix, structural protein; 1.45A {Gallus gallus} SCOP: a.14.1.1 PDB: 1qqv_A 1yu5_X 2rjx_A 2rjy_A 1yu7_X 2rjv_A 2rjw_A 3nkj_A 3myc_A 3mya_A 3mye_X 1unc_A
Probab=34.47 E-value=12 Score=23.26 Aligned_cols=20 Identities=20% Similarity=0.416 Sum_probs=18.4
Q ss_pred cccCcHHHHHHHHHHHhhcC
Q 040912 56 SYLNHPLFQDLLNMAEEEFG 75 (102)
Q Consensus 56 ~~L~hP~F~~LL~~aeEEfG 75 (102)
.||+.-.|++++.++.+||-
T Consensus 31 ~yLsdedF~~vFgms~~eF~ 50 (67)
T 1yu8_X 31 NHLSDEDFKAVFGMTRSAFA 50 (67)
T ss_dssp GGSCHHHHHHHHSSCHHHHH
T ss_pred hcCCHHHHHHHHCcCHHHHH
Confidence 69999999999999999984
No 7
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens}
Probab=33.08 E-value=52 Score=20.35 Aligned_cols=50 Identities=16% Similarity=0.214 Sum_probs=36.9
Q ss_pred EEEEeeCCceeEEEEeeccc--CcHHHHHHHHHHHhhcCCCCCCCceeee---CcHHHHHHHHHhh
Q 040912 39 IAIYVGEGYRKRFVIPISYL--NHPLFQDLLNMAEEEFGFDHPMGGLTIP---CSEEYFVSLTSTL 99 (102)
Q Consensus 39 ~aVyVG~~e~kRfvVp~~~L--~hP~F~~LL~~aeEEfG~~~~~G~L~IP---C~~~~F~~vl~~l 99 (102)
+.+.||+ ++|-+.-..| ..|.|++++... . ++.+.|+ .+.+.|+.++..+
T Consensus 25 v~l~v~~---~~~~aHk~vLaa~S~yF~~~f~~~------~--~~~i~l~~~~~~~~~f~~ll~~~ 79 (116)
T 2vpk_A 25 CTIVIGE---FQFKAHRNVLASFSEYFGAIYRST------S--ENNVFLDQSQVKADGFQKLLEFI 79 (116)
T ss_dssp EEEEETT---EEEEECHHHHHHHCHHHHHHHTTC------C--CSCEECCTTTCCHHHHHHHHHHH
T ss_pred EEEEECC---EEEeccHHHHhhcCHHHHHHHcCC------C--CCeEEeecCCCCHHHHHHHHHHH
Confidence 4556663 4787777777 578999998754 2 3678888 6899999998765
No 8
>1qzp_A Dematin; villin headpiece, actin binding domain, protein binding; NMR {Homo sapiens} SCOP: a.14.1.1 PDB: 1zv6_A
Probab=30.92 E-value=11 Score=23.46 Aligned_cols=20 Identities=35% Similarity=0.556 Sum_probs=18.3
Q ss_pred cccCcHHHHHHHHHHHhhcC
Q 040912 56 SYLNHPLFQDLLNMAEEEFG 75 (102)
Q Consensus 56 ~~L~hP~F~~LL~~aeEEfG 75 (102)
.||+.-.|++++.++.+||-
T Consensus 32 ~yLsdedF~~vFgmsr~eF~ 51 (68)
T 1qzp_A 32 RHLSAEDFSRVFAMSPEEFG 51 (68)
T ss_dssp GGBCHHHHHHHSSSCHHHHH
T ss_pred hhCCHHHHHHHHCcCHHHHH
Confidence 69999999999999999983
No 9
>3n5b_B ASR0485 protein; PII, PIPX, transcription regulator, signal transducer; HET: ADP; 1.90A {Nostoc}
Probab=30.54 E-value=6.5 Score=27.02 Aligned_cols=26 Identities=31% Similarity=0.480 Sum_probs=9.2
Q ss_pred CCCCCceEEEEeeCCceeEEEEeecccCcHHHHHH
Q 040912 32 NNVPKGHIAIYVGEGYRKRFVIPISYLNHPLFQDL 66 (102)
Q Consensus 32 ~~vpkG~~aVyVG~~e~kRfvVp~~~L~hP~F~~L 66 (102)
..||+|..---...+ .|||||.|.-|
T Consensus 13 ~~~~~~~~~~~ms~E---------~YLNHPTFGLL 38 (112)
T 3n5b_B 13 GLVPRGSHMNPENSE---------TYINHPTWGLL 38 (112)
T ss_dssp -------------CC---------CEEEETTTEEE
T ss_pred CcccCCccCCCcchh---------hhccCCccchh
Confidence 357777554333321 39999998654
No 10
>1ujs_A Actin-binding LIM protein homologue; VHP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, structural protein; NMR {Homo sapiens} SCOP: a.14.1.1 PDB: 2l3x_A
Probab=29.96 E-value=16 Score=23.95 Aligned_cols=20 Identities=25% Similarity=0.399 Sum_probs=18.7
Q ss_pred cccCcHHHHHHHHHHHhhcC
Q 040912 56 SYLNHPLFQDLLNMAEEEFG 75 (102)
Q Consensus 56 ~~L~hP~F~~LL~~aeEEfG 75 (102)
.||+.-.|++++.++.+||-
T Consensus 46 ~YLSdedF~~vFgMsr~eF~ 65 (88)
T 1ujs_A 46 RHLSQEEFYQVFGMTISEFD 65 (88)
T ss_dssp GGSCTTHHHHHHSSCHHHHT
T ss_pred hcCCHHHHHHHHCcCHHHHH
Confidence 69999999999999999984
No 11
>2nz0_B Potassium voltage-gated channel subfamily D membe; KV4.3, kchip1, membrane protein; 3.20A {Homo sapiens} PDB: 2i2r_A
Probab=29.67 E-value=53 Score=22.46 Aligned_cols=61 Identities=23% Similarity=0.239 Sum_probs=43.7
Q ss_pred CCceEEEEeeCCceeEEEEeeccc-CcHHHHHHHHHHHhhcCCCCCCCceeeeCcHHHHHHHHHhhh
Q 040912 35 PKGHIAIYVGEGYRKRFVIPISYL-NHPLFQDLLNMAEEEFGFDHPMGGLTIPCSEEYFVSLTSTLN 100 (102)
Q Consensus 35 pkG~~aVyVG~~e~kRfvVp~~~L-~hP~F~~LL~~aeEEfG~~~~~G~L~IPC~~~~F~~vl~~l~ 100 (102)
....+.+-||. +||.+..+-| ++|. .+|..++...-++..+|.+-|-.+-..|++||..+.
T Consensus 33 ~~~~V~LNVGG---~~F~T~~~TL~~~P~--S~L~~~~~~~~~~~~~g~yFiDRdp~~F~~ILnflR 94 (140)
T 2nz0_B 33 QDELIVLNVSG---RRFQTWRTTLERYPD--TLLGSTEKEFFFNEDTKEYFFDRDPEVFRCVLNFYR 94 (140)
T ss_dssp CCCEEEEEETT---EEEEEEHHHHHTCTT--STTTSGGGGGSEETTTTEEEECSCHHHHHHHHHHHH
T ss_pred CCCEEEEEECC---EEEEeeHHHHhcCCC--eeecccCCcccccCCCCeEEEeCCcHHHHHHHHHHh
Confidence 45688889994 6999988766 3342 234444444445545799999999999999998764
No 12
>2k6m_S Supervillin; SVHP, HP, headpiece, archvillin, actin capping, actin-binding, alternative splicing, calcium, cytoplasm, cytoskeleton, membrane; NMR {Homo sapiens} PDB: 2k6n_A
Probab=28.98 E-value=13 Score=23.03 Aligned_cols=20 Identities=30% Similarity=0.546 Sum_probs=18.6
Q ss_pred cccCcHHHHHHHHHHHhhcC
Q 040912 56 SYLNHPLFQDLLNMAEEEFG 75 (102)
Q Consensus 56 ~~L~hP~F~~LL~~aeEEfG 75 (102)
.||+.-.|++++.++.+||-
T Consensus 31 ~yLsdedF~~vFgmsr~eF~ 50 (67)
T 2k6m_S 31 IYLTDEDFEFALDMTRDEYN 50 (67)
T ss_dssp GGSCHHHHHHHTSSCHHHHT
T ss_pred hhCCHHHHHHHHCcCHHHHH
Confidence 69999999999999999985
No 13
>1z3x_A Putative cytidyltransferase; transferase activator; 1.50A {Thermosynechococcus elongatus} SCOP: a.118.1.22 a.261.1.1 PDB: 1z3y_A
Probab=28.84 E-value=1.9 Score=32.99 Aligned_cols=30 Identities=23% Similarity=0.475 Sum_probs=19.1
Q ss_pred CCCCCCceEEEEeeCCceeEEEEeecccCcHHH
Q 040912 31 TNNVPKGHIAIYVGEGYRKRFVIPISYLNHPLF 63 (102)
Q Consensus 31 ~~~vpkG~~aVyVG~~e~kRfvVp~~~L~hP~F 63 (102)
....|+||+|..-. -+=.-|=.+.|+||.|
T Consensus 207 sl~AP~GHLP~~~~---lrGv~l~~~ll~hpa~ 236 (238)
T 1z3x_A 207 DLSAPRGHLPLTNQ---LRGVQVLNALLNHPAW 236 (238)
T ss_dssp STTSCTTCCSCCCC---TTCSHHHHHHHTCGGG
T ss_pred eCCCCCCCCCcCcc---cccHHHHHHHHcCccc
Confidence 34689999998642 1112244567888876
No 14
>1s1g_A Potassium voltage-gated channel subfamily D membe; K+ channels, tetramerization domain, T1 domain, transport PR; 2.60A {Homo sapiens} SCOP: d.42.1.2
Probab=27.93 E-value=39 Score=22.60 Aligned_cols=61 Identities=23% Similarity=0.243 Sum_probs=43.4
Q ss_pred CCceEEEEeeCCceeEEEEeecccC-cHHHHHHHHHHHhhcCCCCCCCceeeeCcHHHHHHHHHhhh
Q 040912 35 PKGHIAIYVGEGYRKRFVIPISYLN-HPLFQDLLNMAEEEFGFDHPMGGLTIPCSEEYFVSLTSTLN 100 (102)
Q Consensus 35 pkG~~aVyVG~~e~kRfvVp~~~L~-hP~F~~LL~~aeEEfG~~~~~G~L~IPC~~~~F~~vl~~l~ 100 (102)
+...+.+-||. +||.+..+-|. +|. .+|..++...-++..+|.+-|-.+-..|..||..+.
T Consensus 11 ~~~~V~LNVGG---~~F~t~~~TL~~~p~--S~L~~~~~~~~~~~~~g~~FiDRdp~~F~~ILnflR 72 (124)
T 1s1g_A 11 QDELIVLNVSG---RRFQTWRTTLERYPD--TLLGSTEKEFFFNEDTKEYFFDRDPEVFRCVLNFYR 72 (124)
T ss_dssp -CCEEEEEETT---EEEEEEHHHHTTSTT--SSTTSSGGGGTBCSSSCSEEECSCHHHHHHHHHHHH
T ss_pred CCCEEEEEeCC---EEEEEeHHHHhcCCC--ceecccCCcccccCCCCcEEEcCChHHHHHHHHHHh
Confidence 45678899994 69999887764 332 234334444445545799999999999999998764
No 15
>2ccq_A P97, peptide N-glycanase homolog; glycoprotein; 1.6A {Homo sapiens} SCOP: d.314.1.1 PDB: 2hpl_A 2hpj_A 2cm0_A
Probab=26.87 E-value=54 Score=21.24 Aligned_cols=43 Identities=21% Similarity=0.303 Sum_probs=29.7
Q ss_pred cCcHHHHHHHHHHH------hhcCCCCCCCceeee--CcHHHHHHHHHhhh
Q 040912 58 LNHPLFQDLLNMAE------EEFGFDHPMGGLTIP--CSEEYFVSLTSTLN 100 (102)
Q Consensus 58 L~hP~F~~LL~~ae------EEfG~~~~~G~L~IP--C~~~~F~~vl~~l~ 100 (102)
+++|.|++=+...+ +..||...++.|.+| +++...+.+...|.
T Consensus 46 ~~N~~f~~~v~~~~G~~e~L~a~GF~~~~~~l~lp~~~~~~~l~~~~d~l~ 96 (99)
T 2ccq_A 46 IGNTAFSTRLLPVRGAVECLFEMGFEEGETHLIFPKKASVEQLQKIRDLIA 96 (99)
T ss_dssp TTCHHHHHHTTTSTTHHHHHHHHTCEECSSEEECCTTSCHHHHHHHHHHHH
T ss_pred cCCHHHHHHhcCCccHHHHHHHccceeCCCeeecCCCCCHHHHHHHHHHHH
Confidence 56888888654431 345998777889998 66667766665553
No 16
>1y6i_A Mg-chelatase cofactor GUN4; helix-bundle, porphyrin binding, ligand binding protein; 1.78A {Synechocystis SP} SCOP: a.118.1.22 a.261.1.1
Probab=26.72 E-value=5 Score=30.53 Aligned_cols=30 Identities=23% Similarity=0.479 Sum_probs=19.7
Q ss_pred CCCCCceEEEEeeCCceeEEEEeecccCcHHHH
Q 040912 32 NNVPKGHIAIYVGEGYRKRFVIPISYLNHPLFQ 64 (102)
Q Consensus 32 ~~vpkG~~aVyVG~~e~kRfvVp~~~L~hP~F~ 64 (102)
..+|+||+|..-.-. .-| |=.+.|+||.|.
T Consensus 200 l~AP~GHLP~~~~lr-G~~--l~~~ll~hpa~~ 229 (233)
T 1y6i_A 200 LSAPQGHLPLLNQLR-GVR--VAESLYRHPVWS 229 (233)
T ss_dssp TTSCTTCCSCCCCTT-CTH--HHHHHHTSTHHH
T ss_pred CCCCCCCCCCccccc-hHH--HHHHHHCCcccc
Confidence 468999999865210 111 455788898884
No 17
>3pmi_A PWWP domain-containing protein MUM1; structural genomics consortium, SGC, protein binding, nucLeu; HET: UNL; 2.82A {Homo sapiens}
Probab=26.13 E-value=21 Score=25.13 Aligned_cols=29 Identities=38% Similarity=0.470 Sum_probs=25.5
Q ss_pred ceeEEEEeecccCcH---HHHHHHHHHHhhcC
Q 040912 47 YRKRFVIPISYLNHP---LFQDLLNMAEEEFG 75 (102)
Q Consensus 47 e~kRfvVp~~~L~hP---~F~~LL~~aeEEfG 75 (102)
+++=|-||+.-|+|= .-++|+++|.|.||
T Consensus 47 ekrGi~V~LrrLK~fDC~ek~~L~~rAre~Y~ 78 (134)
T 3pmi_A 47 KMKGFTVSLKSLKHFDCKEKQTLLNQAREDFN 78 (134)
T ss_dssp TSCCEEEEGGGCEETTSTTHHHHHHHHTTTCH
T ss_pred ccCceEeEcccCCCCChHhHHHHHHHHHHHhc
Confidence 578899999999885 48999999999998
No 18
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A
Probab=25.61 E-value=70 Score=20.06 Aligned_cols=53 Identities=19% Similarity=0.297 Sum_probs=39.2
Q ss_pred EEEEeeCCceeEEEEeeccc--CcHHHHHHHHHHHhhcCCCCCCCceee-e-CcHHHHHHHHHhh
Q 040912 39 IAIYVGEGYRKRFVIPISYL--NHPLFQDLLNMAEEEFGFDHPMGGLTI-P-CSEEYFVSLTSTL 99 (102)
Q Consensus 39 ~aVyVG~~e~kRfvVp~~~L--~hP~F~~LL~~aeEEfG~~~~~G~L~I-P-C~~~~F~~vl~~l 99 (102)
+.+.||+ ++|-+.-..| ..|.|++++...-.| . ...|.| + .+.+.|+.++..+
T Consensus 32 v~l~v~~---~~~~aHk~iLaa~S~~F~~~f~~~~~e---~--~~~i~l~~~~~~~~f~~ll~~~ 88 (127)
T 1r29_A 32 VVIVVSR---EQFRAHKTVLMACSGLFYSIFTDQLKR---N--LSVINLDPEINPEGFNILLDFM 88 (127)
T ss_dssp EEEEETT---EEEEECHHHHHHHCHHHHHHHTSTTTT---T--CSEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECC---EEEehHHHHHHHhCHHHHHHhcCCccC---C--CCEEEeCCCCCHHHHHHHHHHH
Confidence 4556663 4787777777 679999999865555 2 368999 4 6889999998765
No 19
>3qli_A Coenzyme A transferase; COEN transferase; 1.90A {Yersinia pestis} PDB: 3qlk_A 3s8d_A
Probab=25.31 E-value=38 Score=27.70 Aligned_cols=45 Identities=27% Similarity=0.333 Sum_probs=31.3
Q ss_pred CCCCCCceEEEEeeC---------CceeEEEEeecccCcHHHHHHHHHHHhhcCC
Q 040912 31 TNNVPKGHIAIYVGE---------GYRKRFVIPISYLNHPLFQDLLNMAEEEFGF 76 (102)
Q Consensus 31 ~~~vpkG~~aVyVG~---------~e~kRfvVp~~~L~hP~F~~LL~~aeEEfG~ 76 (102)
+...|++++-+.|.| .-++|-.-=++ +-||.||+.|.+++++.|+
T Consensus 401 ~vtt~~~~v~~vvTE~Gva~l~G~s~~eRa~~lI~-iAHPdfR~~L~~~A~~~~~ 454 (455)
T 3qli_A 401 PVTTPRIDTHYIVTEFGAVNLKGLSSTERALRIIE-LAHPDFRDELTQAAKKMHL 454 (455)
T ss_dssp SCSBCTTTCCEEEETTEEEECTTCCHHHHHHHHHT-TSCHHHHHHHHHHHHHTTC
T ss_pred CcccCcccccEEEeccEEEECCCCCHHHHHHHHHH-ccCcchHHHHHHHHHHcCC
Confidence 345688888888865 11333333334 8899999999998888764
No 20
>2lkt_A Retinoic acid receptor responder protein 3; TIG3, human tumor suppressor II family, NLPC/P60, hydrolase; NMR {Homo sapiens}
Probab=24.73 E-value=33 Score=22.39 Aligned_cols=9 Identities=56% Similarity=1.339 Sum_probs=8.0
Q ss_pred eEEEEeeCC
Q 040912 38 HIAIYVGEG 46 (102)
Q Consensus 38 ~~aVyVG~~ 46 (102)
|.+||||++
T Consensus 23 H~gIYvGdg 31 (125)
T 2lkt_A 23 HWALYIGDG 31 (125)
T ss_dssp EEEEEEETT
T ss_pred EEEEEeCCC
Confidence 899999985
No 21
>1zav_U 50S ribosomal protein L7/L12; ribosome structure and function, L10-L12 complex structure, L10E structure, L7/12 ribosomal stalk; 1.90A {Thermotoga maritima} SCOP: a.108.1.1 PDB: 1zaw_U 1zax_U 1dd3_C
Probab=23.84 E-value=47 Score=17.42 Aligned_cols=13 Identities=31% Similarity=0.759 Sum_probs=10.5
Q ss_pred HHHHHHHHHhhcC
Q 040912 63 FQDLLNMAEEEFG 75 (102)
Q Consensus 63 F~~LL~~aeEEfG 75 (102)
..+|.+.-||+||
T Consensus 18 l~eLvk~lEe~fG 30 (30)
T 1zav_U 18 LAELVKKLEDKFG 30 (30)
T ss_dssp HHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhC
Confidence 4678888899988
No 22
>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens}
Probab=23.12 E-value=1e+02 Score=19.37 Aligned_cols=50 Identities=20% Similarity=0.317 Sum_probs=37.3
Q ss_pred EEEEeeCCceeEEEEeecccC--cHHHHHHHHHHHhhcCCCCCCCceeee--CcHHHHHHHHHhh
Q 040912 39 IAIYVGEGYRKRFVIPISYLN--HPLFQDLLNMAEEEFGFDHPMGGLTIP--CSEEYFVSLTSTL 99 (102)
Q Consensus 39 ~aVyVG~~e~kRfvVp~~~L~--hP~F~~LL~~aeEEfG~~~~~G~L~IP--C~~~~F~~vl~~l 99 (102)
+.+.||+ ++|-+.-..|. .|.|++++... . ...|.|| .+.+.|+.++..+
T Consensus 36 v~l~v~~---~~~~~Hk~vLaa~S~~F~~~f~~~------~--~~~i~l~~~~~~~~f~~ll~~i 89 (129)
T 3ga1_A 36 VSVVVKG---HAFKAHRAVLAASSSYFRDLFNNS------R--SAVVELPAAVQPQSFQQILSFC 89 (129)
T ss_dssp EEEEETT---EEEEECHHHHHHHBHHHHHHHHHC------C--CSEEECCTTCCHHHHHHHHHHH
T ss_pred eEEEECC---EEEEehHHHHHHcCHHHHHHHcCC------C--CCEEEECCCCCHHHHHHHHHHH
Confidence 4666763 47777766664 68899998775 2 3689997 8899999998865
No 23
>3ezo_A Malonyl COA-acyl carrier protein transacylase; ssgcid, acyl-carrier-protein S-malonyltransferase, acyltransferase, transferase; 2.05A {Burkholderia pseudomallei 1710B}
Probab=22.58 E-value=49 Score=24.86 Aligned_cols=40 Identities=15% Similarity=0.358 Sum_probs=26.5
Q ss_pred ceEEEEeeCCceeEEEEeecccCcHHHHHHHHHHHhhcCCC
Q 040912 37 GHIAIYVGEGYRKRFVIPISYLNHPLFQDLLNMAEEEFGFD 77 (102)
Q Consensus 37 G~~aVyVG~~e~kRfvVp~~~L~hP~F~~LL~~aeEEfG~~ 77 (102)
-..-|+-|++ .+..=.--+.+++|.|++.++++.+-+|++
T Consensus 10 ~~~f~F~GQG-sQ~~gMg~~L~~~p~fr~~~~~~~~~lg~~ 49 (318)
T 3ezo_A 10 KFAFVFPGQG-SQSVGMLNAFADVAVVRETLDEASDALGQD 49 (318)
T ss_dssp CEEEEECCTT-CCCTTTTGGGTTCHHHHHHHHHHHHHHSSC
T ss_pred CeEEEECCcc-hhhhhHHHHHhhCHHHHHHHHHHHHHhCCC
Confidence 3556777774 221111223338999999999999999875
No 24
>3drz_A BTB/POZ domain-containing protein KCTD5; potassium channel domain T1, pentamer, unkno function; 1.90A {Homo sapiens}
Probab=21.85 E-value=1.6e+02 Score=18.59 Aligned_cols=60 Identities=20% Similarity=0.325 Sum_probs=42.3
Q ss_pred CceEEEEeeCCceeEEEEeecccC-cH--HHHHHHHHHHhhcC--CCCCCCceeeeCcHHHHHHHHHhhh
Q 040912 36 KGHIAIYVGEGYRKRFVIPISYLN-HP--LFQDLLNMAEEEFG--FDHPMGGLTIPCSEEYFVSLTSTLN 100 (102)
Q Consensus 36 kG~~aVyVG~~e~kRfvVp~~~L~-hP--~F~~LL~~aeEEfG--~~~~~G~L~IPC~~~~F~~vl~~l~ 100 (102)
...+.+-||. ++|.+..+-|. +| .|..|... ..++. .+ ++|.+-|-.+...|..||..+.
T Consensus 5 ~~~v~LNVGG---~~f~t~~~TL~~~p~s~L~~~~~~-~~~~~~~~d-~~~~~fiDRdp~~F~~IL~~lr 69 (107)
T 3drz_A 5 SKWVRLNVGG---TYFLTTRQTLCRDPKSFLYRLCQA-DPDLDSDKD-ETGAYLIDRDPTYFGPVLNYLR 69 (107)
T ss_dssp CCEEEEEETT---EEEEEEHHHHTSSTTSHHHHHHTT-CGGGGGGBC-TTSCEEECSCHHHHHHHHHHHH
T ss_pred CCEEEEEECC---EEEEECHHHHhcCCCcchhHHHhc-CCCCCcCCC-CCceEEecCChHHHHHHHHHhC
Confidence 3567888984 69999988775 44 46666432 12332 23 4689999999999999998764
No 25
>1wy3_A Villin; structural protein; HET: NLE; 0.95A {Synthetic} PDB: 1wy4_A 1yri_A* 1yrf_A* 2f4k_A* 1vii_A 3trv_A* 3trw_A 3tjw_B* 3trv_B* 3try_A* 2ppz_A 2jm0_A* 3tjw_A* 3iur_B*
Probab=21.50 E-value=29 Score=18.94 Aligned_cols=17 Identities=24% Similarity=0.505 Sum_probs=13.7
Q ss_pred cCcHHHHHHHHHHHhhc
Q 040912 58 LNHPLFQDLLNMAEEEF 74 (102)
Q Consensus 58 L~hP~F~~LL~~aeEEf 74 (102)
|+.-.|++++.++.+||
T Consensus 1 Lsd~dF~~vFgmsr~eF 17 (35)
T 1wy3_A 1 LSDEDFKAVFGMTRSAF 17 (35)
T ss_dssp CCHHHHHHHHSSCHHHH
T ss_pred CCHHHHHHHHCCCHHHH
Confidence 56677888888888887
No 26
>1w8x_N Protein P31, protein C, GPC; virus, P3 major capsid protein, P30 TAPE measure, P31 penton protein, P16 membrane protein; 4.20A {Enterobacteria phage PRD1} SCOP: i.6.1.1
Probab=20.42 E-value=18 Score=24.90 Aligned_cols=28 Identities=32% Similarity=0.650 Sum_probs=17.3
Q ss_pred CCceEEEEeeCCceeEEE----------EeecccCcHHHH
Q 040912 35 PKGHIAIYVGEGYRKRFV----------IPISYLNHPLFQ 64 (102)
Q Consensus 35 pkG~~aVyVG~~e~kRfv----------Vp~~~L~hP~F~ 64 (102)
..||+|+.|-. +-+|+ +|+-+||.|.-+
T Consensus 86 ~QGYfPlL~~~--~~KFv~~~~~~GKks~P~~FlNF~IA~ 123 (126)
T 1w8x_N 86 KQGYFPLLVPG--RAKFVARHLGSGKKSVPLFFLNFTIAQ 123 (126)
T ss_dssp CCSSCCEEECC--SSSSEEEEEEEESSCCCCSCCC-----
T ss_pred Ccccceeeccc--hhhhhhhhhcCCCcceeeEEEeceeee
Confidence 47999999963 44555 688888887643
Done!