BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 040913
         (425 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1THG|A Chain A, 1.8 Angstroms Refined Structure Of The Lipase From
           Geotrichum Candidum
          Length = 544

 Score = 32.7 bits (73), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 3/50 (6%)

Query: 376 CIYLCVFRP-GIEISSRQLCQLWIAEGFIPYNSEET--AELYLKELIHRG 422
           C+YL VFRP G +  ++    +WI  G   Y S        Y+KE I+ G
Sbjct: 105 CLYLNVFRPAGTKPDAKLPVMVWIYGGAFVYGSSAAYPGNSYVKESINMG 154


>pdb|1BX1|A Chain A, Ferredoxin:nadp+ Oxidoreductase (Ferredoxin Reductase)
           Mutant E312q
          Length = 314

 Score = 29.6 bits (65), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 1/47 (2%)

Query: 343 SAALGNYMDEKMVLAVLSRTCSVFELPLHLK-VCCIYLCVFRPGIEI 388
           S+ALG++ D K V   + R     +    +K VC  +LC  +PG E+
Sbjct: 99  SSALGDFGDAKSVSLCVKRLIYTNDAGETIKGVCSNFLCDLKPGAEV 145


>pdb|1BX0|A Chain A, Ferredoxin:nadp+ Oxidoreductase (Ferredoxin Reductase)
           Mutant E312l
          Length = 314

 Score = 29.6 bits (65), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 1/47 (2%)

Query: 343 SAALGNYMDEKMVLAVLSRTCSVFELPLHLK-VCCIYLCVFRPGIEI 388
           S+ALG++ D K V   + R     +    +K VC  +LC  +PG E+
Sbjct: 99  SSALGDFGDAKSVSLCVKRLIYTNDAGETIKGVCSNFLCDLKPGAEV 145


>pdb|1FNB|A Chain A, Refined Crystal Structure Of Spinach Ferredoxin Reductase
           At 1.7 Angstroms Resolution: Oxidized, Reduced, And 2'-
           Phospho-5'-Amp Bound States
 pdb|1FNC|A Chain A, Refined Crystal Structure Of Spinach Ferredoxin Reductase
           At 1.7 Angstroms Resolution: Oxidized, Reduced, And 2'-
           Phospho-5'-Amp Bound States
 pdb|1FND|A Chain A, Refined Crystal Structure Of Spinach Ferredoxin Reductase
           At 1.7 Angstroms Resolution: Oxidized, Reduced, And 2'-
           Phospho-5'-Amp Bound States
          Length = 314

 Score = 29.6 bits (65), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 1/47 (2%)

Query: 343 SAALGNYMDEKMVLAVLSRTCSVFELPLHLK-VCCIYLCVFRPGIEI 388
           S+ALG++ D K V   + R     +    +K VC  +LC  +PG E+
Sbjct: 99  SSALGDFGDAKSVSLCVKRLIYTNDAGETIKGVCSNFLCDLKPGAEV 145


>pdb|1FRQ|A Chain A, Ferredoxin:nadp+ Oxidoreductase (Ferredoxin Reductase)
           Mutant E312a
          Length = 314

 Score = 29.6 bits (65), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 1/47 (2%)

Query: 343 SAALGNYMDEKMVLAVLSRTCSVFELPLHLK-VCCIYLCVFRPGIEI 388
           S+ALG++ D K V   + R     +    +K VC  +LC  +PG E+
Sbjct: 99  SSALGDFGDAKSVSLCVKRLIYTNDAGETIKGVCSNFLCDLKPGAEV 145


>pdb|1FRN|A Chain A, The Involvement Of Ser96 In The Catalytic Mechanism Of
           Ferredoxin-Nadp+ Reductase: Structure-Function
           Relationship As Studied By Site-Directed Mutagenesis And
           X- Ray Crystallography
          Length = 314

 Score = 29.6 bits (65), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 1/47 (2%)

Query: 343 SAALGNYMDEKMVLAVLSRTCSVFELPLHLK-VCCIYLCVFRPGIEI 388
           S+ALG++ D K V   + R     +    +K VC  +LC  +PG E+
Sbjct: 99  SSALGDFGDAKSVSLCVKRLIYTNDAGETIKGVCSNFLCDLKPGAEV 145


>pdb|2FT9|A Chain A, Crystal Structure Of Axolotl (ambystoma Mexicanum) Liver
           Bile Acid-binding Protein Bound To Cholic Acid
 pdb|2FTB|A Chain A, Crystal Structure Of Axolotl (Ambystoma Mexicanum) Liver
           Bile Acid-Binding Protein Bound To Oleic Acid
          Length = 125

 Score = 29.3 bits (64), Expect = 4.8,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 10/63 (15%)

Query: 275 IEIWDDLEEVLPDNQNGSRVLITVINP--SLLTSFEL--------LNGEKIRCDYVLVEG 324
           I +  D+  ++   QNG   ++T   P  S+  SF +        + G+KI+C  VL  G
Sbjct: 28  INVAKDINPIIEIQQNGDNFVVTSKTPNQSVTNSFTIGKEAEITSMGGKKIKCTVVLEGG 87

Query: 325 PLI 327
            L+
Sbjct: 88  KLV 90


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.323    0.141    0.416 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,128,042
Number of Sequences: 62578
Number of extensions: 489656
Number of successful extensions: 1034
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1033
Number of HSP's gapped (non-prelim): 9
length of query: 425
length of database: 14,973,337
effective HSP length: 102
effective length of query: 323
effective length of database: 8,590,381
effective search space: 2774693063
effective search space used: 2774693063
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 53 (25.0 bits)