Query 040913
Match_columns 425
No_of_seqs 292 out of 2546
Neff 8.7
Searched_HMMs 46136
Date Fri Mar 29 13:03:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040913.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040913hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 2.6E-56 5.7E-61 476.2 25.8 366 50-425 29-470 (889)
2 PF00931 NB-ARC: NB-ARC domain 100.0 1.7E-40 3.8E-45 318.4 6.7 229 172-404 1-283 (287)
3 PLN03210 Resistant to P. syrin 100.0 4.9E-31 1.1E-35 294.9 15.4 235 164-425 181-482 (1153)
4 PRK00411 cdc6 cell division co 98.6 3E-07 6.4E-12 92.3 10.9 108 163-272 26-148 (394)
5 TIGR03015 pepcterm_ATPase puta 98.3 4.8E-06 1E-10 78.9 11.5 88 190-284 43-146 (269)
6 TIGR02928 orc1/cdc6 family rep 98.3 1.5E-06 3.3E-11 86.2 8.3 107 165-272 13-139 (365)
7 PF13173 AAA_14: AAA domain 98.3 1.1E-06 2.5E-11 73.5 6.0 96 190-304 2-102 (128)
8 TIGR00635 ruvB Holliday juncti 98.3 8.9E-06 1.9E-10 78.7 13.0 47 167-213 4-53 (305)
9 PF05729 NACHT: NACHT domain 98.3 9.9E-07 2.1E-11 76.7 5.7 107 191-304 1-133 (166)
10 PRK00080 ruvB Holliday junctio 98.3 3.4E-05 7.4E-10 75.5 16.5 49 165-213 23-74 (328)
11 PF01637 Arch_ATPase: Archaeal 98.3 4.5E-06 9.7E-11 76.8 9.5 43 169-213 1-43 (234)
12 cd00009 AAA The AAA+ (ATPases 98.2 4E-06 8.7E-11 70.7 7.3 42 170-213 1-42 (151)
13 PF13191 AAA_16: AAA ATPase do 98.2 1.4E-06 3E-11 77.5 4.5 46 168-213 1-47 (185)
14 PF13401 AAA_22: AAA domain; P 98.0 9.9E-06 2.1E-10 67.7 6.3 103 190-300 4-125 (131)
15 PTZ00202 tuzin; Provisional 98.0 5.1E-05 1.1E-09 75.0 11.7 137 160-304 255-404 (550)
16 PRK13342 recombination factor 98.0 1.2E-05 2.5E-10 81.2 7.5 108 167-296 12-124 (413)
17 cd01128 rho_factor Transcripti 98.0 4.9E-06 1.1E-10 77.6 4.4 82 190-272 16-113 (249)
18 PRK04841 transcriptional regul 97.9 3.4E-05 7.4E-10 85.7 10.0 125 166-301 13-162 (903)
19 PRK09376 rho transcription ter 97.9 9.5E-06 2.1E-10 79.4 4.4 93 178-272 158-266 (416)
20 PRK05564 DNA polymerase III su 97.9 8.6E-05 1.9E-09 72.1 10.5 122 167-302 4-134 (313)
21 PRK13341 recombination factor 97.8 8.6E-05 1.9E-09 79.4 9.5 109 167-297 28-142 (725)
22 PRK06893 DNA replication initi 97.8 4.4E-05 9.5E-10 70.7 6.3 24 190-213 39-62 (229)
23 TIGR01242 26Sp45 26S proteasom 97.8 0.0001 2.2E-09 73.2 9.0 57 162-220 117-184 (364)
24 TIGR02903 spore_lon_C ATP-depe 97.8 0.00012 2.5E-09 77.5 9.7 133 167-302 154-335 (615)
25 COG2909 MalT ATP-dependent tra 97.7 0.0013 2.8E-08 69.7 16.2 124 176-303 24-172 (894)
26 PHA02544 44 clamp loader, smal 97.7 0.00016 3.5E-09 70.2 9.2 114 166-301 20-141 (316)
27 PRK12402 replication factor C 97.7 0.00013 2.8E-09 71.5 8.5 44 167-212 15-58 (337)
28 PRK04195 replication factor C 97.6 0.00018 4E-09 74.0 9.1 48 166-213 13-62 (482)
29 PRK14963 DNA polymerase III su 97.6 0.00023 5E-09 73.3 9.6 132 167-300 14-155 (504)
30 COG2256 MGS1 ATPase related to 97.6 0.00015 3.3E-09 70.5 7.6 90 190-302 48-144 (436)
31 PRK07003 DNA polymerase III su 97.6 0.00035 7.5E-09 73.8 10.7 132 167-302 16-160 (830)
32 TIGR00767 rho transcription te 97.6 5.3E-05 1.2E-09 74.6 4.4 82 190-272 168-265 (415)
33 TIGR03420 DnaA_homol_Hda DnaA 97.6 8.8E-05 1.9E-09 68.3 5.5 40 172-213 22-61 (226)
34 PRK08727 hypothetical protein; 97.6 0.00011 2.3E-09 68.3 6.0 41 170-212 23-63 (233)
35 PRK08116 hypothetical protein; 97.6 9E-05 2E-09 70.2 5.2 102 191-301 115-221 (268)
36 PRK14960 DNA polymerase III su 97.6 0.00051 1.1E-08 71.7 10.7 134 166-300 14-157 (702)
37 PRK00440 rfc replication facto 97.5 0.00046 1E-08 66.9 9.9 118 167-300 17-141 (319)
38 PLN03025 replication factor C 97.5 0.00078 1.7E-08 65.6 11.2 118 167-300 13-138 (319)
39 PRK14961 DNA polymerase III su 97.5 0.00068 1.5E-08 67.3 10.9 133 166-300 15-158 (363)
40 COG1474 CDC6 Cdc6-related prot 97.5 0.00021 4.6E-09 70.5 7.0 99 168-272 18-133 (366)
41 PF05673 DUF815: Protein of un 97.5 0.00079 1.7E-08 61.9 10.0 107 162-287 22-133 (249)
42 PF00004 AAA: ATPase family as 97.5 0.00034 7.4E-09 58.1 6.9 21 193-213 1-21 (132)
43 PRK09087 hypothetical protein; 97.5 0.00054 1.2E-08 63.2 8.8 24 190-213 44-67 (226)
44 PRK14955 DNA polymerase III su 97.5 0.00075 1.6E-08 67.7 10.5 134 166-303 15-170 (397)
45 PRK10536 hypothetical protein; 97.5 7.8E-05 1.7E-09 69.2 2.9 42 167-212 55-96 (262)
46 PTZ00112 origin recognition co 97.5 0.00051 1.1E-08 73.3 9.3 104 166-272 754-879 (1164)
47 PRK08118 topology modulation p 97.4 0.00027 5.9E-09 62.0 6.1 65 192-272 3-68 (167)
48 PRK12323 DNA polymerase III su 97.4 0.00051 1.1E-08 71.6 8.7 131 167-304 16-168 (700)
49 PRK14957 DNA polymerase III su 97.4 0.00087 1.9E-08 69.4 10.2 127 166-299 15-157 (546)
50 PRK08691 DNA polymerase III su 97.4 0.0011 2.5E-08 69.7 11.1 128 166-300 15-158 (709)
51 PRK03992 proteasome-activating 97.4 0.00081 1.7E-08 67.3 9.6 50 163-212 127-187 (389)
52 PRK06645 DNA polymerase III su 97.4 0.0013 2.7E-08 67.7 11.0 135 167-304 21-172 (507)
53 KOG2543 Origin recognition com 97.4 0.00093 2E-08 64.6 9.2 108 165-272 4-125 (438)
54 KOG2028 ATPase related to the 97.3 0.00035 7.6E-09 67.0 5.9 96 190-302 162-262 (554)
55 PRK06526 transposase; Provisio 97.3 0.00028 6E-09 66.2 5.0 70 191-272 99-169 (254)
56 PRK14962 DNA polymerase III su 97.3 0.00075 1.6E-08 69.0 8.5 46 166-212 13-58 (472)
57 PRK14949 DNA polymerase III su 97.3 0.00071 1.5E-08 72.9 8.4 132 166-300 15-158 (944)
58 PRK07940 DNA polymerase III su 97.3 0.0016 3.5E-08 64.9 10.3 128 167-300 5-156 (394)
59 PRK08181 transposase; Validate 97.3 0.00024 5.1E-09 67.2 4.1 98 192-301 108-209 (269)
60 TIGR02397 dnaX_nterm DNA polym 97.3 0.0017 3.8E-08 64.0 10.2 136 166-302 13-158 (355)
61 PRK11331 5-methylcytosine-spec 97.3 0.00065 1.4E-08 68.1 6.9 100 166-272 174-282 (459)
62 PRK05896 DNA polymerase III su 97.3 0.0015 3.2E-08 68.0 9.8 127 166-299 15-157 (605)
63 PRK14969 DNA polymerase III su 97.3 0.0015 3.3E-08 67.8 10.0 127 167-300 16-158 (527)
64 PHA00729 NTP-binding motif con 97.2 0.0017 3.7E-08 59.3 9.1 85 179-279 8-101 (226)
65 PRK14951 DNA polymerase III su 97.2 0.0014 2.9E-08 68.9 9.5 134 166-303 15-167 (618)
66 TIGR02881 spore_V_K stage V sp 97.2 0.0011 2.4E-08 62.6 8.1 45 168-212 7-64 (261)
67 COG0466 Lon ATP-dependent Lon 97.2 0.0032 6.9E-08 65.7 11.6 55 164-220 320-378 (782)
68 PRK08903 DnaA regulatory inact 97.2 0.0011 2.4E-08 61.1 7.8 45 169-213 21-65 (227)
69 CHL00095 clpC Clp protease ATP 97.2 0.00038 8.3E-09 76.3 5.2 44 167-212 179-222 (821)
70 smart00382 AAA ATPases associa 97.2 0.00078 1.7E-08 55.9 6.0 23 191-213 3-25 (148)
71 PRK14956 DNA polymerase III su 97.2 0.0024 5.1E-08 64.8 10.3 135 166-303 17-164 (484)
72 PRK08084 DNA replication initi 97.2 0.0011 2.3E-08 61.6 7.4 23 190-212 45-67 (235)
73 PTZ00454 26S protease regulato 97.2 0.0022 4.9E-08 64.1 10.1 98 162-272 140-248 (398)
74 PRK10865 protein disaggregatio 97.2 0.00077 1.7E-08 74.0 7.3 44 167-212 178-221 (857)
75 CHL00181 cbbX CbbX; Provisiona 97.2 0.0028 6E-08 60.7 10.2 45 168-212 24-81 (287)
76 TIGR00763 lon ATP-dependent pr 97.2 0.004 8.7E-08 67.9 12.7 89 124-212 263-369 (775)
77 PF05496 RuvB_N: Holliday junc 97.2 0.00061 1.3E-08 61.9 5.2 100 165-285 22-125 (233)
78 PRK12377 putative replication 97.1 0.00046 9.9E-09 64.4 4.4 100 190-300 101-205 (248)
79 TIGR02639 ClpA ATP-dependent C 97.1 0.00099 2.1E-08 72.2 7.6 44 167-212 182-225 (731)
80 PRK14958 DNA polymerase III su 97.1 0.0028 6.2E-08 65.4 10.6 130 167-300 16-158 (509)
81 PRK07994 DNA polymerase III su 97.1 0.0017 3.8E-08 68.3 9.1 134 166-303 15-162 (647)
82 PRK07261 topology modulation p 97.1 0.0007 1.5E-08 59.6 5.2 65 192-272 2-67 (171)
83 TIGR03345 VI_ClpV1 type VI sec 97.1 0.003 6.4E-08 69.3 11.1 117 167-288 566-695 (852)
84 PRK14964 DNA polymerase III su 97.1 0.0032 7E-08 64.3 10.6 136 166-304 12-160 (491)
85 PRK05642 DNA replication initi 97.1 0.0011 2.3E-08 61.7 6.5 23 190-212 45-67 (234)
86 PRK14954 DNA polymerase III su 97.1 0.0047 1E-07 65.1 11.8 130 167-303 16-170 (620)
87 TIGR02880 cbbX_cfxQ probable R 97.1 0.0023 5E-08 61.2 8.7 45 168-212 23-80 (284)
88 PRK14970 DNA polymerase III su 97.1 0.0026 5.6E-08 63.2 9.3 119 166-298 16-145 (367)
89 PRK06620 hypothetical protein; 97.1 0.0031 6.7E-08 57.7 9.1 51 163-213 13-67 (214)
90 COG0542 clpA ATP-binding subun 97.1 0.039 8.5E-07 59.0 18.3 115 168-288 492-620 (786)
91 PRK07471 DNA polymerase III su 97.1 0.005 1.1E-07 60.9 11.1 134 165-302 17-182 (365)
92 TIGR02639 ClpA ATP-dependent C 97.1 0.0045 9.8E-08 67.1 11.7 113 167-287 454-579 (731)
93 PF04665 Pox_A32: Poxvirus A32 97.0 0.00045 9.7E-09 63.8 3.2 34 191-226 14-47 (241)
94 PF00308 Bac_DnaA: Bacterial d 97.0 0.0015 3.2E-08 60.0 6.6 47 166-212 8-56 (219)
95 PF13207 AAA_17: AAA domain; P 97.0 0.00052 1.1E-08 56.4 3.0 22 192-213 1-22 (121)
96 COG1373 Predicted ATPase (AAA+ 96.9 0.0037 8.1E-08 62.7 9.1 94 192-305 39-135 (398)
97 TIGR00678 holB DNA polymerase 96.9 0.0062 1.4E-07 54.4 9.5 123 178-301 3-136 (188)
98 smart00763 AAA_PrkA PrkA AAA d 96.9 0.0008 1.7E-08 65.6 3.8 48 166-213 50-101 (361)
99 PRK09183 transposase/IS protei 96.9 0.00052 1.1E-08 64.7 2.4 22 191-212 103-124 (259)
100 PRK07764 DNA polymerase III su 96.9 0.0046 1E-07 67.3 9.9 133 167-304 15-164 (824)
101 PF02562 PhoH: PhoH-like prote 96.9 0.00012 2.5E-09 66.1 -2.1 38 171-212 4-41 (205)
102 PRK14950 DNA polymerase III su 96.9 0.0079 1.7E-07 63.5 11.1 130 166-300 15-159 (585)
103 PF14532 Sigma54_activ_2: Sigm 96.9 0.0019 4.1E-08 54.7 5.3 108 170-302 1-111 (138)
104 PRK14088 dnaA chromosomal repl 96.8 0.0018 4E-08 65.8 6.0 48 165-213 104-153 (440)
105 PRK09112 DNA polymerase III su 96.8 0.0071 1.5E-07 59.5 9.9 49 163-212 19-67 (351)
106 PRK06696 uridine kinase; Valid 96.8 0.0015 3.3E-08 60.1 4.9 41 172-212 3-44 (223)
107 PF01695 IstB_IS21: IstB-like 96.8 0.00023 5E-09 63.1 -0.6 71 190-272 47-118 (178)
108 PRK06305 DNA polymerase III su 96.8 0.0066 1.4E-07 61.9 9.8 46 166-212 16-61 (451)
109 TIGR03689 pup_AAA proteasome A 96.8 0.0023 5.1E-08 65.6 6.4 51 163-213 178-239 (512)
110 PRK10865 protein disaggregatio 96.8 0.012 2.7E-07 64.7 12.3 116 167-287 568-696 (857)
111 TIGR03346 chaperone_ClpB ATP-d 96.8 0.0031 6.7E-08 69.5 7.7 44 167-212 173-216 (852)
112 TIGR01241 FtsH_fam ATP-depende 96.8 0.01 2.2E-07 61.4 11.2 98 162-272 50-157 (495)
113 PRK14086 dnaA chromosomal repl 96.8 0.0018 3.9E-08 67.5 5.5 23 190-212 314-336 (617)
114 cd01133 F1-ATPase_beta F1 ATP 96.8 0.0019 4.1E-08 60.8 5.2 80 191-272 70-173 (274)
115 KOG2004 Mitochondrial ATP-depe 96.8 0.024 5.2E-07 59.2 13.3 88 125-212 355-460 (906)
116 PRK00149 dnaA chromosomal repl 96.8 0.0015 3.2E-08 66.8 4.7 48 166-213 122-171 (450)
117 cd01131 PilT Pilus retraction 96.8 0.0021 4.5E-08 58.1 5.0 109 191-305 2-113 (198)
118 PRK14952 DNA polymerase III su 96.7 0.017 3.7E-07 60.5 12.3 134 167-304 13-162 (584)
119 TIGR03346 chaperone_ClpB ATP-d 96.7 0.012 2.6E-07 64.9 11.8 116 167-287 565-693 (852)
120 COG2607 Predicted ATPase (AAA+ 96.7 0.0078 1.7E-07 54.9 8.3 118 162-300 55-182 (287)
121 PRK07667 uridine kinase; Provi 96.7 0.0021 4.6E-08 57.7 4.9 37 176-212 3-39 (193)
122 TIGR00362 DnaA chromosomal rep 96.7 0.0048 1E-07 62.2 7.9 47 166-212 110-158 (405)
123 TIGR00602 rad24 checkpoint pro 96.7 0.011 2.5E-07 62.3 10.8 47 166-212 83-132 (637)
124 PRK14953 DNA polymerase III su 96.7 0.013 2.9E-07 60.2 11.0 45 167-212 16-60 (486)
125 PRK09111 DNA polymerase III su 96.7 0.014 3E-07 61.5 11.3 134 166-303 23-175 (598)
126 PRK14087 dnaA chromosomal repl 96.7 0.0082 1.8E-07 61.2 9.4 47 166-212 115-163 (450)
127 PRK11034 clpA ATP-dependent Cl 96.7 0.0021 4.6E-08 69.2 5.3 44 167-212 186-229 (758)
128 COG3899 Predicted ATPase [Gene 96.7 0.009 1.9E-07 65.6 10.2 45 168-212 1-46 (849)
129 PF13671 AAA_33: AAA domain; P 96.7 0.0033 7.1E-08 53.2 5.4 88 192-286 1-93 (143)
130 PRK05541 adenylylsulfate kinas 96.7 0.0014 2.9E-08 58.0 3.1 30 189-220 6-35 (176)
131 PRK14959 DNA polymerase III su 96.6 0.013 2.9E-07 61.4 10.7 133 167-304 16-163 (624)
132 PRK11034 clpA ATP-dependent Cl 96.6 0.012 2.7E-07 63.5 10.7 113 167-286 458-582 (758)
133 PRK06921 hypothetical protein; 96.6 0.0011 2.5E-08 62.6 2.5 24 190-213 117-140 (266)
134 PRK08939 primosomal protein Dn 96.6 0.0026 5.7E-08 61.3 4.9 118 171-300 135-260 (306)
135 PRK14965 DNA polymerase III su 96.6 0.011 2.5E-07 62.1 9.9 132 166-304 15-163 (576)
136 PRK10787 DNA-binding ATP-depen 96.6 0.017 3.7E-07 62.8 11.4 88 125-212 266-371 (784)
137 COG2884 FtsE Predicted ATPase 96.6 0.0096 2.1E-07 52.5 7.6 116 190-305 28-201 (223)
138 CHL00176 ftsH cell division pr 96.5 0.011 2.3E-07 62.8 9.3 96 164-272 180-285 (638)
139 PRK14971 DNA polymerase III su 96.5 0.015 3.3E-07 61.5 10.3 129 167-303 17-164 (614)
140 PRK06835 DNA replication prote 96.5 0.0027 5.9E-08 61.8 4.4 23 191-213 184-206 (329)
141 PRK12422 chromosomal replicati 96.5 0.0053 1.1E-07 62.4 6.5 24 190-213 141-164 (445)
142 CHL00095 clpC Clp protease ATP 96.5 0.021 4.6E-07 62.7 11.5 115 167-287 509-637 (821)
143 TIGR01243 CDC48 AAA family ATP 96.5 0.0057 1.2E-07 66.4 7.0 96 164-272 175-281 (733)
144 PRK15455 PrkA family serine pr 96.5 0.0032 7E-08 64.8 4.6 45 168-212 77-125 (644)
145 COG1121 ZnuC ABC-type Mn/Zn tr 96.4 0.021 4.5E-07 53.1 9.4 58 245-304 139-202 (254)
146 PRK06647 DNA polymerase III su 96.4 0.029 6.3E-07 58.7 11.2 133 167-300 16-158 (563)
147 COG1484 DnaC DNA replication p 96.4 0.0023 5E-08 60.1 2.8 25 189-213 104-128 (254)
148 TIGR02858 spore_III_AA stage I 96.3 0.033 7.2E-07 52.7 10.4 126 175-305 97-233 (270)
149 COG0572 Udk Uridine kinase [Nu 96.3 0.0059 1.3E-07 55.3 5.1 73 189-263 7-85 (218)
150 PRK07952 DNA replication prote 96.3 0.0038 8.2E-08 58.2 3.9 38 176-213 85-122 (244)
151 PRK05563 DNA polymerase III su 96.3 0.031 6.7E-07 58.6 10.9 46 166-212 15-60 (559)
152 PRK08451 DNA polymerase III su 96.3 0.033 7.1E-07 57.7 10.8 132 166-300 13-156 (535)
153 cd03281 ABC_MSH5_euk MutS5 hom 96.3 0.0087 1.9E-07 54.7 6.0 115 190-305 29-158 (213)
154 PRK14948 DNA polymerase III su 96.3 0.032 6.9E-07 59.1 10.9 130 167-300 16-160 (620)
155 COG4618 ArpD ABC-type protease 96.3 0.021 4.6E-07 57.5 8.9 22 190-211 362-383 (580)
156 PF13177 DNA_pol3_delta2: DNA 96.2 0.046 9.9E-07 47.6 10.1 129 171-302 1-143 (162)
157 COG0593 DnaA ATPase involved i 96.2 0.0098 2.1E-07 59.1 6.3 50 163-212 84-135 (408)
158 PF00485 PRK: Phosphoribulokin 96.2 0.0036 7.9E-08 56.2 3.0 21 192-212 1-21 (194)
159 TIGR01359 UMP_CMP_kin_fam UMP- 96.2 0.04 8.7E-07 48.7 9.8 22 192-213 1-22 (183)
160 PRK11608 pspF phage shock prot 96.2 0.012 2.7E-07 57.3 7.0 47 167-213 6-52 (326)
161 TIGR03345 VI_ClpV1 type VI sec 96.2 0.0048 1E-07 67.7 4.4 44 167-212 187-230 (852)
162 PTZ00361 26 proteosome regulat 96.2 0.0053 1.2E-07 62.0 4.4 54 165-220 181-245 (438)
163 PRK05480 uridine/cytidine kina 96.1 0.0044 9.5E-08 56.4 3.3 25 189-213 5-29 (209)
164 COG2255 RuvB Holliday junction 96.1 0.0048 1E-07 57.6 3.5 47 166-212 25-74 (332)
165 PF13238 AAA_18: AAA domain; P 96.1 0.0041 8.8E-08 51.3 2.8 20 193-212 1-20 (129)
166 PRK09270 nucleoside triphospha 96.1 0.0067 1.4E-07 56.1 4.5 26 187-212 30-55 (229)
167 COG1875 NYN ribonuclease and A 96.1 0.012 2.6E-07 56.9 6.1 127 166-302 220-389 (436)
168 PRK08233 hypothetical protein; 96.1 0.0046 1E-07 54.6 3.2 24 190-213 3-26 (182)
169 KOG1532 GTPase XAB1, interacts 96.1 0.0076 1.6E-07 55.9 4.6 27 188-214 17-43 (366)
170 PRK07133 DNA polymerase III su 96.1 0.04 8.6E-07 58.8 10.6 132 167-304 18-162 (725)
171 TIGR00235 udk uridine kinase. 96.1 0.0049 1.1E-07 56.0 3.2 24 189-212 5-28 (207)
172 cd03214 ABC_Iron-Siderophores_ 96.0 0.014 3E-07 51.7 6.0 115 190-304 25-161 (180)
173 cd03238 ABC_UvrA The excision 96.0 0.025 5.5E-07 50.0 7.5 115 190-304 21-152 (176)
174 TIGR02974 phageshock_pspF psp 96.0 0.028 6.1E-07 54.9 8.5 45 169-213 1-45 (329)
175 PRK11889 flhF flagellar biosyn 96.0 0.11 2.3E-06 51.6 12.2 24 189-212 240-263 (436)
176 PF07693 KAP_NTPase: KAP famil 96.0 0.064 1.4E-06 52.1 10.9 40 173-212 2-42 (325)
177 PTZ00301 uridine kinase; Provi 96.0 0.0055 1.2E-07 55.8 3.1 23 190-212 3-25 (210)
178 cd01123 Rad51_DMC1_radA Rad51_ 96.0 0.011 2.5E-07 54.5 5.3 25 188-212 17-41 (235)
179 COG0470 HolB ATPase involved i 96.0 0.041 9E-07 53.3 9.5 130 168-300 2-148 (325)
180 TIGR01817 nifA Nif-specific re 96.0 0.021 4.5E-07 59.7 7.8 50 164-213 193-242 (534)
181 PRK06547 hypothetical protein; 96.0 0.01 2.2E-07 52.3 4.7 25 189-213 14-38 (172)
182 COG1136 SalX ABC-type antimicr 95.9 0.035 7.5E-07 50.8 8.1 58 249-306 147-208 (226)
183 cd03247 ABCC_cytochrome_bd The 95.9 0.026 5.6E-07 49.9 7.2 24 190-213 28-51 (178)
184 COG1419 FlhF Flagellar GTP-bin 95.9 0.044 9.6E-07 54.1 9.2 24 189-212 202-226 (407)
185 PRK13531 regulatory ATPase Rav 95.9 0.016 3.4E-07 58.9 6.3 40 169-212 22-61 (498)
186 COG1618 Predicted nucleotide k 95.9 0.0054 1.2E-07 52.5 2.5 23 190-212 5-27 (179)
187 cd03263 ABC_subfamily_A The AB 95.9 0.022 4.8E-07 52.1 6.8 23 190-212 28-50 (220)
188 cd01393 recA_like RecA is a b 95.9 0.021 4.6E-07 52.4 6.7 28 185-212 14-41 (226)
189 KOG0989 Replication factor C, 95.9 0.049 1.1E-06 51.5 8.8 125 166-298 35-166 (346)
190 PRK06762 hypothetical protein; 95.8 0.0073 1.6E-07 52.7 3.1 23 190-212 2-24 (166)
191 PRK12608 transcription termina 95.8 0.0078 1.7E-07 59.1 3.5 37 175-212 119-155 (380)
192 KOG0733 Nuclear AAA ATPase (VC 95.8 0.031 6.7E-07 57.4 7.6 97 163-272 186-292 (802)
193 TIGR02237 recomb_radB DNA repa 95.7 0.011 2.5E-07 53.6 4.1 25 188-212 10-34 (209)
194 PF05621 TniB: Bacterial TniB 95.7 0.05 1.1E-06 51.8 8.5 102 166-272 33-155 (302)
195 cd02019 NK Nucleoside/nucleoti 95.7 0.0072 1.6E-07 44.5 2.3 21 192-212 1-21 (69)
196 PRK08058 DNA polymerase III su 95.7 0.094 2E-06 51.3 10.6 128 168-302 6-151 (329)
197 PRK15429 formate hydrogenlyase 95.7 0.03 6.4E-07 60.5 7.7 48 166-213 375-422 (686)
198 TIGR03522 GldA_ABC_ATP gliding 95.7 0.042 9.1E-07 53.0 8.0 24 190-213 28-51 (301)
199 cd03115 SRP The signal recogni 95.7 0.043 9.3E-07 48.1 7.4 21 192-212 2-22 (173)
200 cd03252 ABCC_Hemolysin The ABC 95.6 0.045 9.8E-07 50.7 7.9 23 190-212 28-50 (237)
201 PRK05707 DNA polymerase III su 95.6 0.092 2E-06 51.3 10.3 108 187-302 19-147 (328)
202 PRK05022 anaerobic nitric oxid 95.6 0.033 7.2E-07 57.8 7.7 48 166-213 186-233 (509)
203 COG4608 AppF ABC-type oligopep 95.6 0.027 5.9E-07 52.5 6.2 117 190-306 39-175 (268)
204 smart00534 MUTSac ATPase domai 95.6 0.01 2.2E-07 53.0 3.3 111 192-305 1-126 (185)
205 cd03228 ABCC_MRP_Like The MRP 95.6 0.041 8.8E-07 48.3 7.1 24 190-213 28-51 (171)
206 KOG2227 Pre-initiation complex 95.6 0.028 6E-07 56.1 6.3 105 164-272 147-266 (529)
207 PRK03839 putative kinase; Prov 95.6 0.0088 1.9E-07 53.0 2.7 22 192-213 2-23 (180)
208 cd00561 CobA_CobO_BtuR ATP:cor 95.6 0.025 5.4E-07 48.9 5.4 111 191-302 3-139 (159)
209 cd03246 ABCC_Protease_Secretio 95.6 0.029 6.3E-07 49.3 6.0 24 190-213 28-51 (173)
210 KOG0744 AAA+-type ATPase [Post 95.6 0.018 4E-07 54.7 4.9 77 190-272 177-260 (423)
211 PF00448 SRP54: SRP54-type pro 95.6 0.01 2.3E-07 53.4 3.2 23 190-212 1-23 (196)
212 PRK14527 adenylate kinase; Pro 95.6 0.078 1.7E-06 47.4 8.9 24 189-212 5-28 (191)
213 TIGR01360 aden_kin_iso1 adenyl 95.6 0.01 2.2E-07 52.7 3.1 24 189-212 2-25 (188)
214 PRK04296 thymidine kinase; Pro 95.6 0.012 2.6E-07 52.7 3.5 107 191-303 3-118 (190)
215 PRK09361 radB DNA repair and r 95.6 0.017 3.6E-07 53.2 4.6 32 181-212 14-45 (225)
216 cd03221 ABCF_EF-3 ABCF_EF-3 E 95.5 0.07 1.5E-06 45.4 8.1 103 190-304 26-130 (144)
217 cd02023 UMPK Uridine monophosp 95.5 0.0078 1.7E-07 54.2 2.3 21 192-212 1-21 (198)
218 cd03216 ABC_Carb_Monos_I This 95.5 0.028 6.1E-07 48.9 5.6 106 190-303 26-144 (163)
219 cd03244 ABCC_MRP_domain2 Domai 95.5 0.066 1.4E-06 49.0 8.3 23 190-212 30-52 (221)
220 COG0563 Adk Adenylate kinase a 95.5 0.064 1.4E-06 47.5 7.8 22 192-213 2-23 (178)
221 cd00983 recA RecA is a bacter 95.4 0.029 6.2E-07 54.4 5.9 83 188-272 53-143 (325)
222 PRK04040 adenylate kinase; Pro 95.4 0.012 2.7E-07 52.5 3.1 23 190-212 2-24 (188)
223 cd03249 ABC_MTABC3_MDL1_MDL2 M 95.4 0.074 1.6E-06 49.3 8.5 24 190-213 29-52 (238)
224 TIGR01420 pilT_fam pilus retra 95.4 0.023 5E-07 55.9 5.2 109 190-305 122-234 (343)
225 cd03369 ABCC_NFT1 Domain 2 of 95.4 0.076 1.7E-06 48.1 8.4 23 190-212 34-56 (207)
226 cd02025 PanK Pantothenate kina 95.4 0.0088 1.9E-07 54.9 2.2 21 192-212 1-21 (220)
227 KOG0729 26S proteasome regulat 95.4 0.057 1.2E-06 50.1 7.3 94 165-272 175-280 (435)
228 PRK13650 cbiO cobalt transport 95.4 0.032 7E-07 53.2 6.1 23 190-212 33-55 (279)
229 PF00158 Sigma54_activat: Sigm 95.4 0.016 3.5E-07 50.8 3.7 46 169-214 1-46 (168)
230 cd03243 ABC_MutS_homologs The 95.4 0.013 2.9E-07 53.0 3.2 22 191-212 30-51 (202)
231 TIGR00150 HI0065_YjeE ATPase, 95.4 0.023 5.1E-07 47.6 4.4 40 174-213 6-45 (133)
232 cd03282 ABC_MSH4_euk MutS4 hom 95.4 0.025 5.4E-07 51.3 5.0 113 190-305 29-155 (204)
233 cd03253 ABCC_ATM1_transporter 95.4 0.072 1.6E-06 49.2 8.3 24 190-213 27-50 (236)
234 cd03251 ABCC_MsbA MsbA is an e 95.4 0.071 1.5E-06 49.2 8.2 23 190-212 28-50 (234)
235 KOG2228 Origin recognition com 95.4 0.022 4.7E-07 54.6 4.6 139 167-305 24-186 (408)
236 CHL00195 ycf46 Ycf46; Provisio 95.4 0.099 2.1E-06 53.8 9.8 93 166-272 227-328 (489)
237 PLN00020 ribulose bisphosphate 95.3 0.021 4.6E-07 55.8 4.6 26 188-213 146-171 (413)
238 TIGR02012 tigrfam_recA protein 95.3 0.031 6.7E-07 54.1 5.8 85 186-272 51-143 (321)
239 PRK14738 gmk guanylate kinase; 95.3 0.015 3.3E-07 52.8 3.3 30 183-212 6-35 (206)
240 TIGR02322 phosphon_PhnN phosph 95.3 0.013 2.8E-07 51.8 2.9 23 191-213 2-24 (179)
241 PF03205 MobB: Molybdopterin g 95.3 0.015 3.2E-07 49.4 3.0 22 191-212 1-22 (140)
242 PRK12726 flagellar biosynthesi 95.3 1.1 2.4E-05 44.4 16.3 23 190-212 206-228 (407)
243 TIGR03740 galliderm_ABC gallid 95.3 0.042 9.2E-07 50.4 6.3 23 190-212 26-48 (223)
244 PRK10820 DNA-binding transcrip 95.3 0.042 9.2E-07 57.2 6.9 48 166-213 203-250 (520)
245 COG1102 Cmk Cytidylate kinase 95.3 0.028 6E-07 48.3 4.5 44 192-237 2-45 (179)
246 COG0542 clpA ATP-binding subun 95.3 0.018 3.9E-07 61.5 4.2 126 166-302 169-311 (786)
247 cd03254 ABCC_Glucan_exporter_l 95.3 0.081 1.8E-06 48.7 8.2 23 190-212 29-51 (229)
248 PLN02318 phosphoribulokinase/u 95.2 0.022 4.8E-07 59.0 4.6 34 179-212 54-87 (656)
249 PRK12724 flagellar biosynthesi 95.2 0.18 3.9E-06 50.5 10.8 23 190-212 223-245 (432)
250 PRK11174 cysteine/glutathione 95.2 0.062 1.3E-06 56.9 8.2 24 189-212 375-398 (588)
251 TIGR02868 CydC thiol reductant 95.2 0.052 1.1E-06 56.7 7.5 24 189-212 360-383 (529)
252 PRK13657 cyclic beta-1,2-gluca 95.2 0.052 1.1E-06 57.5 7.6 24 189-212 360-383 (588)
253 cd03217 ABC_FeS_Assembly ABC-t 95.2 0.064 1.4E-06 48.4 7.1 24 190-213 26-49 (200)
254 PRK10751 molybdopterin-guanine 95.2 0.017 3.6E-07 50.8 3.1 24 189-212 5-28 (173)
255 TIGR03263 guanyl_kin guanylate 95.2 0.015 3.3E-07 51.3 2.9 22 191-212 2-23 (180)
256 PRK09354 recA recombinase A; P 95.2 0.037 8.1E-07 54.1 5.8 91 180-272 49-148 (349)
257 COG0488 Uup ATPase components 95.2 0.13 2.8E-06 53.4 10.0 112 190-304 348-499 (530)
258 PRK10867 signal recognition pa 95.2 0.041 8.9E-07 55.6 6.2 23 189-211 99-121 (433)
259 cd02024 NRK1 Nicotinamide ribo 95.2 0.012 2.7E-07 52.4 2.2 22 192-213 1-22 (187)
260 TIGR03375 type_I_sec_LssB type 95.2 0.06 1.3E-06 58.2 8.0 23 190-212 491-513 (694)
261 PRK00131 aroK shikimate kinase 95.1 0.016 3.5E-07 50.6 2.9 23 190-212 4-26 (175)
262 KOG0734 AAA+-type ATPase conta 95.1 0.13 2.9E-06 52.1 9.5 53 164-216 301-363 (752)
263 PRK00625 shikimate kinase; Pro 95.1 0.015 3.2E-07 51.3 2.6 21 192-212 2-22 (173)
264 cd01394 radB RadB. The archaea 95.1 0.034 7.3E-07 50.8 5.1 32 181-212 10-41 (218)
265 TIGR01243 CDC48 AAA family ATP 95.1 0.046 9.9E-07 59.5 6.9 97 163-272 449-556 (733)
266 cd02028 UMPK_like Uridine mono 95.1 0.013 2.9E-07 51.9 2.3 21 192-212 1-21 (179)
267 TIGR03574 selen_PSTK L-seryl-t 95.1 0.024 5.2E-07 53.1 4.1 20 193-212 2-21 (249)
268 TIGR00554 panK_bact pantothena 95.1 0.033 7.1E-07 53.2 5.0 24 188-211 60-83 (290)
269 TIGR00958 3a01208 Conjugate Tr 95.0 0.083 1.8E-06 57.3 8.6 24 189-212 506-529 (711)
270 cd02020 CMPK Cytidine monophos 95.0 0.015 3.2E-07 49.3 2.4 21 192-212 1-21 (147)
271 PRK06217 hypothetical protein; 95.0 0.016 3.4E-07 51.5 2.6 22 192-213 3-24 (183)
272 PRK00889 adenylylsulfate kinas 95.0 0.021 4.5E-07 50.3 3.3 23 190-212 4-26 (175)
273 cd03287 ABC_MSH3_euk MutS3 hom 95.0 0.021 4.6E-07 52.4 3.4 113 190-305 31-158 (222)
274 cd03300 ABC_PotA_N PotA is an 95.0 0.063 1.4E-06 49.6 6.7 24 190-213 26-49 (232)
275 cd00071 GMPK Guanosine monopho 95.0 0.017 3.7E-07 48.8 2.6 22 192-213 1-22 (137)
276 PF08477 Miro: Miro-like prote 95.0 0.02 4.3E-07 46.6 2.9 22 193-214 2-23 (119)
277 COG0396 sufC Cysteine desulfur 95.0 0.095 2.1E-06 47.7 7.3 26 190-215 30-55 (251)
278 TIGR01069 mutS2 MutS2 family p 95.0 0.5 1.1E-05 51.5 14.2 114 190-306 322-450 (771)
279 TIGR03796 NHPM_micro_ABC1 NHPM 94.9 0.074 1.6E-06 57.7 8.0 24 189-212 504-527 (710)
280 PRK13947 shikimate kinase; Pro 94.9 0.018 3.9E-07 50.4 2.6 21 192-212 3-23 (171)
281 TIGR01193 bacteriocin_ABC ABC- 94.9 0.069 1.5E-06 57.9 7.6 23 190-212 500-522 (708)
282 PRK05439 pantothenate kinase; 94.9 0.036 7.7E-07 53.4 4.8 25 188-212 84-108 (311)
283 TIGR02857 CydD thiol reductant 94.9 0.081 1.8E-06 55.3 7.8 24 189-212 347-370 (529)
284 PRK08972 fliI flagellum-specif 94.9 0.044 9.6E-07 55.1 5.5 79 190-272 162-262 (444)
285 PRK14974 cell division protein 94.9 0.099 2.2E-06 51.1 7.8 24 189-212 139-162 (336)
286 PRK00300 gmk guanylate kinase; 94.9 0.02 4.2E-07 51.8 2.8 24 190-213 5-28 (205)
287 PRK00771 signal recognition pa 94.8 0.13 2.9E-06 52.0 8.9 24 189-212 94-117 (437)
288 PF03308 ArgK: ArgK protein; 94.8 0.046 1E-06 50.8 5.1 38 175-212 14-51 (266)
289 TIGR00959 ffh signal recogniti 94.8 0.061 1.3E-06 54.3 6.4 24 189-212 98-121 (428)
290 PRK07594 type III secretion sy 94.8 0.059 1.3E-06 54.3 6.2 81 190-272 155-255 (433)
291 COG0703 AroK Shikimate kinase 94.8 0.064 1.4E-06 46.8 5.6 21 192-212 4-24 (172)
292 PRK03846 adenylylsulfate kinas 94.8 0.025 5.5E-07 50.9 3.3 24 189-212 23-46 (198)
293 cd02021 GntK Gluconate kinase 94.8 0.019 4.2E-07 49.0 2.4 22 192-213 1-22 (150)
294 TIGR02314 ABC_MetN D-methionin 94.8 0.071 1.5E-06 52.4 6.6 23 190-212 31-53 (343)
295 PRK13537 nodulation ABC transp 94.7 0.1 2.2E-06 50.5 7.6 23 190-212 33-55 (306)
296 COG4088 Predicted nucleotide k 94.7 0.026 5.7E-07 50.4 3.1 22 191-212 2-23 (261)
297 PRK10078 ribose 1,5-bisphospho 94.7 0.024 5.2E-07 50.5 3.0 23 191-213 3-25 (186)
298 PRK05201 hslU ATP-dependent pr 94.7 0.04 8.7E-07 55.0 4.7 46 167-212 15-72 (443)
299 cd03289 ABCC_CFTR2 The CFTR su 94.7 0.11 2.5E-06 49.3 7.7 23 190-212 30-52 (275)
300 cd01878 HflX HflX subfamily. 94.7 0.067 1.4E-06 48.2 5.9 26 189-214 40-65 (204)
301 TIGR00390 hslU ATP-dependent p 94.7 0.039 8.4E-07 55.1 4.5 46 167-212 12-69 (441)
302 PRK13949 shikimate kinase; Pro 94.7 0.023 5.1E-07 49.8 2.7 21 192-212 3-23 (169)
303 KOG0924 mRNA splicing factor A 94.6 0.14 3E-06 53.3 8.4 127 175-306 360-515 (1042)
304 TIGR02203 MsbA_lipidA lipid A 94.6 0.086 1.9E-06 55.6 7.4 24 189-212 357-380 (571)
305 PRK08149 ATP synthase SpaL; Va 94.6 0.05 1.1E-06 54.7 5.2 25 190-214 151-175 (428)
306 PRK11388 DNA-binding transcrip 94.6 0.066 1.4E-06 57.3 6.5 48 166-213 324-371 (638)
307 COG2274 SunT ABC-type bacterio 94.6 0.093 2E-06 56.4 7.5 23 190-212 499-521 (709)
308 cd00227 CPT Chloramphenicol (C 94.6 0.024 5.3E-07 49.9 2.7 23 191-213 3-25 (175)
309 PRK11176 lipid transporter ATP 94.6 0.084 1.8E-06 55.8 7.2 23 190-212 369-391 (582)
310 PF07728 AAA_5: AAA domain (dy 94.6 0.026 5.6E-07 47.5 2.7 20 193-212 2-21 (139)
311 TIGR03498 FliI_clade3 flagella 94.6 0.072 1.6E-06 53.5 6.3 81 190-272 140-240 (418)
312 COG1124 DppF ABC-type dipeptid 94.6 0.027 5.7E-07 51.7 2.9 23 190-212 33-55 (252)
313 PRK14723 flhF flagellar biosyn 94.6 0.083 1.8E-06 56.7 7.0 23 190-212 185-207 (767)
314 PRK09280 F0F1 ATP synthase sub 94.6 0.051 1.1E-06 55.1 5.2 81 191-272 145-248 (463)
315 PF00437 T2SE: Type II/IV secr 94.6 0.0099 2.1E-07 56.3 0.1 129 168-304 105-235 (270)
316 PF01583 APS_kinase: Adenylyls 94.6 0.033 7.1E-07 48.1 3.3 23 190-212 2-24 (156)
317 PRK12597 F0F1 ATP synthase sub 94.6 0.038 8.1E-07 56.1 4.2 81 190-271 143-246 (461)
318 PF08423 Rad51: Rad51; InterP 94.6 0.022 4.8E-07 53.6 2.4 84 189-272 37-143 (256)
319 PRK00279 adk adenylate kinase; 94.6 0.16 3.5E-06 46.3 8.1 21 192-212 2-22 (215)
320 KOG2170 ATPase of the AAA+ sup 94.5 1.3 2.8E-05 42.1 13.8 109 168-286 83-203 (344)
321 PRK14530 adenylate kinase; Pro 94.5 0.026 5.6E-07 51.6 2.7 21 192-212 5-25 (215)
322 cd03285 ABC_MSH2_euk MutS2 hom 94.5 0.065 1.4E-06 49.3 5.3 111 189-305 29-157 (222)
323 COG1428 Deoxynucleoside kinase 94.5 0.028 6E-07 50.5 2.6 25 190-214 4-28 (216)
324 PRK14528 adenylate kinase; Pro 94.4 0.27 5.8E-06 43.8 9.0 23 191-213 2-24 (186)
325 PRK07399 DNA polymerase III su 94.4 0.29 6.3E-06 47.5 9.9 45 167-212 4-48 (314)
326 PF00005 ABC_tran: ABC transpo 94.4 0.036 7.7E-07 46.4 3.2 24 190-213 11-34 (137)
327 TIGR01846 type_I_sec_HlyB type 94.4 0.11 2.5E-06 56.1 7.8 24 190-213 483-506 (694)
328 cd00820 PEPCK_HprK Phosphoenol 94.4 0.037 7.9E-07 44.5 3.0 22 190-211 15-36 (107)
329 PRK11160 cysteine/glutathione 94.4 0.097 2.1E-06 55.3 7.1 24 189-212 365-388 (574)
330 cd00464 SK Shikimate kinase (S 94.4 0.029 6.2E-07 48.0 2.6 20 193-212 2-21 (154)
331 TIGR00073 hypB hydrogenase acc 94.4 0.035 7.6E-07 50.4 3.3 25 188-212 20-44 (207)
332 KOG0741 AAA+-type ATPase [Post 94.4 0.11 2.3E-06 52.8 6.8 101 188-305 536-655 (744)
333 PRK12723 flagellar biosynthesi 94.4 0.24 5.3E-06 49.3 9.4 93 189-287 173-282 (388)
334 PF08298 AAA_PrkA: PrkA AAA do 94.4 0.052 1.1E-06 52.8 4.5 47 166-212 60-110 (358)
335 PF06309 Torsin: Torsin; Inte 94.4 0.06 1.3E-06 44.4 4.2 47 167-213 25-76 (127)
336 TIGR00176 mobB molybdopterin-g 94.4 0.027 5.8E-07 48.7 2.3 21 192-212 1-21 (155)
337 PRK09435 membrane ATPase/prote 94.4 0.056 1.2E-06 52.6 4.8 37 176-212 42-78 (332)
338 COG1131 CcmA ABC-type multidru 94.4 0.26 5.6E-06 47.3 9.3 23 190-212 31-53 (293)
339 cd01428 ADK Adenylate kinase ( 94.4 0.38 8.3E-06 42.7 9.9 21 193-213 2-22 (194)
340 PRK13975 thymidylate kinase; P 94.3 0.033 7.2E-07 49.8 3.0 23 191-213 3-25 (196)
341 COG0464 SpoVK ATPases of the A 94.3 0.08 1.7E-06 54.8 6.1 95 165-272 240-345 (494)
342 TIGR01313 therm_gnt_kin carboh 94.3 0.026 5.5E-07 49.0 2.1 20 193-212 1-20 (163)
343 KOG0735 AAA+-type ATPase [Post 94.3 0.086 1.9E-06 55.2 6.1 87 167-272 408-504 (952)
344 PRK14722 flhF flagellar biosyn 94.3 0.076 1.6E-06 52.5 5.6 23 190-212 137-159 (374)
345 PRK05688 fliI flagellum-specif 94.3 0.079 1.7E-06 53.6 5.7 83 190-272 168-268 (451)
346 COG1222 RPT1 ATP-dependent 26S 94.2 0.064 1.4E-06 51.9 4.7 130 161-305 145-304 (406)
347 PF00910 RNA_helicase: RNA hel 94.2 0.028 6E-07 45.3 2.0 20 193-212 1-20 (107)
348 cd02027 APSK Adenosine 5'-phos 94.2 0.031 6.7E-07 47.9 2.4 21 192-212 1-21 (149)
349 PRK05057 aroK shikimate kinase 94.2 0.036 7.8E-07 48.8 2.9 23 190-212 4-26 (172)
350 PRK10923 glnG nitrogen regulat 94.2 0.14 3E-06 52.6 7.6 47 167-213 138-184 (469)
351 PRK12678 transcription termina 94.2 0.039 8.4E-07 56.9 3.3 93 178-272 405-513 (672)
352 TIGR03797 NHPM_micro_ABC2 NHPM 94.2 0.15 3.2E-06 55.1 8.0 24 189-212 478-501 (686)
353 TIGR00750 lao LAO/AO transport 94.2 0.057 1.2E-06 52.1 4.4 37 176-212 20-56 (300)
354 PF12775 AAA_7: P-loop contain 94.1 0.13 2.9E-06 48.7 6.7 33 177-212 23-55 (272)
355 PRK14721 flhF flagellar biosyn 94.1 0.15 3.3E-06 51.2 7.4 22 190-211 191-212 (420)
356 PRK07960 fliI flagellum-specif 94.1 0.085 1.8E-06 53.2 5.6 83 190-272 175-275 (455)
357 PRK10733 hflB ATP-dependent me 94.1 0.22 4.8E-06 53.2 9.1 93 167-272 152-254 (644)
358 COG3903 Predicted ATPase [Gene 94.1 0.011 2.4E-07 58.0 -0.7 108 189-306 13-132 (414)
359 COG0468 RecA RecA/RadA recombi 94.1 0.082 1.8E-06 50.1 5.1 84 185-272 55-151 (279)
360 CHL00081 chlI Mg-protoporyphyr 94.1 0.048 1E-06 53.5 3.7 47 164-212 14-60 (350)
361 PRK14737 gmk guanylate kinase; 94.1 0.046 9.9E-07 48.8 3.3 25 189-213 3-27 (186)
362 KOG0991 Replication factor C, 94.1 0.057 1.2E-06 49.2 3.7 44 167-212 27-70 (333)
363 TIGR02238 recomb_DMC1 meiotic 94.1 0.074 1.6E-06 51.5 4.9 31 181-211 87-117 (313)
364 PRK13948 shikimate kinase; Pro 94.0 0.043 9.4E-07 48.7 3.0 24 189-212 9-32 (182)
365 TIGR01192 chvA glucan exporter 94.0 0.15 3.2E-06 54.0 7.6 24 189-212 360-383 (585)
366 PRK06936 type III secretion sy 94.0 0.12 2.6E-06 52.1 6.4 79 190-272 162-262 (439)
367 COG2019 AdkA Archaeal adenylat 94.0 0.047 1E-06 47.1 3.0 23 190-212 4-26 (189)
368 COG1763 MobB Molybdopterin-gua 94.0 0.042 9E-07 47.6 2.7 23 190-212 2-24 (161)
369 PF07726 AAA_3: ATPase family 94.0 0.024 5.2E-07 47.0 1.2 27 193-221 2-28 (131)
370 COG1936 Predicted nucleotide k 94.0 0.039 8.4E-07 48.0 2.5 20 192-211 2-21 (180)
371 PRK05537 bifunctional sulfate 94.0 0.078 1.7E-06 55.6 5.2 47 166-212 368-414 (568)
372 cd01135 V_A-ATPase_B V/A-type 94.0 0.074 1.6E-06 50.1 4.6 82 191-272 70-176 (276)
373 cd04139 RalA_RalB RalA/RalB su 93.9 0.049 1.1E-06 46.7 3.1 23 192-214 2-24 (164)
374 PRK00409 recombination and DNA 93.9 1.4 3.1E-05 48.1 15.0 114 190-306 327-455 (782)
375 PHA02774 E1; Provisional 93.9 0.17 3.7E-06 52.4 7.4 36 176-212 421-456 (613)
376 PRK13946 shikimate kinase; Pro 93.9 0.041 8.9E-07 48.9 2.7 23 190-212 10-32 (184)
377 PF01926 MMR_HSR1: 50S ribosom 93.9 0.051 1.1E-06 44.1 3.0 21 193-213 2-22 (116)
378 PRK12339 2-phosphoglycerate ki 93.9 0.05 1.1E-06 49.0 3.2 24 190-213 3-26 (197)
379 TIGR03499 FlhF flagellar biosy 93.9 0.049 1.1E-06 52.0 3.3 24 189-212 193-216 (282)
380 COG1703 ArgK Putative periplas 93.9 0.069 1.5E-06 50.5 4.1 37 176-212 37-73 (323)
381 TIGR03305 alt_F1F0_F1_bet alte 93.9 0.039 8.5E-07 55.7 2.7 82 190-272 138-242 (449)
382 PLN02348 phosphoribulokinase 93.9 0.076 1.6E-06 52.6 4.6 26 187-212 46-71 (395)
383 COG1100 GTPase SAR1 and relate 93.9 0.043 9.3E-07 49.9 2.8 24 191-214 6-29 (219)
384 COG1126 GlnQ ABC-type polar am 93.9 0.058 1.3E-06 48.7 3.4 24 190-213 28-51 (240)
385 cd01121 Sms Sms (bacterial rad 93.9 0.08 1.7E-06 52.5 4.8 35 178-212 70-104 (372)
386 PRK04182 cytidylate kinase; Pr 93.8 0.048 1E-06 47.9 2.9 21 192-212 2-22 (180)
387 PRK05342 clpX ATP-dependent pr 93.8 0.069 1.5E-06 53.7 4.3 46 167-212 71-130 (412)
388 cd01129 PulE-GspE PulE/GspE Th 93.8 0.1 2.2E-06 49.3 5.3 122 170-304 62-187 (264)
389 PRK08927 fliI flagellum-specif 93.8 0.09 2E-06 53.0 5.1 25 189-213 157-181 (442)
390 PF00625 Guanylate_kin: Guanyl 93.8 0.046 1E-06 48.5 2.8 23 190-212 2-24 (183)
391 KOG0066 eIF2-interacting prote 93.8 0.24 5.2E-06 49.2 7.8 23 190-212 613-635 (807)
392 KOG1969 DNA replication checkp 93.8 0.11 2.3E-06 54.8 5.6 65 189-272 325-397 (877)
393 PF03029 ATP_bind_1: Conserved 93.8 0.036 7.8E-07 51.5 2.1 20 195-214 1-20 (238)
394 COG1223 Predicted ATPase (AAA+ 93.8 0.086 1.9E-06 48.8 4.4 51 164-214 118-175 (368)
395 cd04163 Era Era subfamily. Er 93.8 0.058 1.3E-06 46.0 3.3 24 190-213 3-26 (168)
396 PF13521 AAA_28: AAA domain; P 93.8 0.039 8.5E-07 47.9 2.2 21 193-213 2-22 (163)
397 cd03116 MobB Molybdenum is an 93.8 0.053 1.2E-06 47.1 3.0 22 191-212 2-23 (159)
398 PRK10790 putative multidrug tr 93.8 0.16 3.6E-06 53.8 7.3 24 189-212 366-389 (592)
399 TIGR02173 cyt_kin_arch cytidyl 93.7 0.05 1.1E-06 47.4 2.8 21 192-212 2-22 (171)
400 PF00006 ATP-synt_ab: ATP synt 93.7 0.079 1.7E-06 48.4 4.2 24 191-214 16-39 (215)
401 PRK14493 putative bifunctional 93.7 0.049 1.1E-06 51.7 2.9 22 191-212 2-23 (274)
402 PRK09825 idnK D-gluconate kina 93.7 0.051 1.1E-06 48.0 2.8 22 191-212 4-25 (176)
403 PLN03187 meiotic recombination 93.7 0.089 1.9E-06 51.5 4.7 91 182-272 118-231 (344)
404 PF03266 NTPase_1: NTPase; In 93.7 0.047 1E-06 47.9 2.5 21 193-213 2-22 (168)
405 COG0237 CoaE Dephospho-CoA kin 93.7 0.055 1.2E-06 48.8 3.0 23 190-212 2-24 (201)
406 TIGR02902 spore_lonB ATP-depen 93.7 0.072 1.6E-06 55.6 4.3 44 167-212 65-108 (531)
407 TIGR02239 recomb_RAD51 DNA rep 93.7 0.099 2.1E-06 50.8 5.0 35 178-212 84-118 (316)
408 KOG0927 Predicted transporter 93.7 0.35 7.6E-06 49.3 8.9 56 248-305 225-283 (614)
409 TIGR02030 BchI-ChlI magnesium 93.7 0.09 1.9E-06 51.4 4.7 45 166-212 3-47 (337)
410 PLN02200 adenylate kinase fami 93.7 0.056 1.2E-06 50.1 3.2 23 190-212 43-65 (234)
411 TIGR01842 type_I_sec_PrtD type 93.7 0.23 5.1E-06 52.0 8.2 24 189-212 343-366 (544)
412 PRK04301 radA DNA repair and r 93.7 0.13 2.9E-06 49.9 5.9 32 181-212 93-124 (317)
413 cd01132 F1_ATPase_alpha F1 ATP 93.6 0.14 3E-06 48.3 5.7 92 191-285 70-184 (274)
414 PRK12727 flagellar biosynthesi 93.6 0.1 2.2E-06 53.7 5.1 24 189-212 349-372 (559)
415 PLN02796 D-glycerate 3-kinase 93.6 0.059 1.3E-06 52.5 3.3 24 189-212 99-122 (347)
416 PF00154 RecA: recA bacterial 93.6 0.1 2.3E-06 50.4 4.9 82 189-272 52-141 (322)
417 TIGR00064 ftsY signal recognit 93.6 0.1 2.2E-06 49.5 4.9 24 189-212 71-94 (272)
418 KOG0927 Predicted transporter 93.6 1.7 3.6E-05 44.7 13.3 43 170-213 397-439 (614)
419 TIGR02204 MsbA_rel ABC transpo 93.5 0.18 3.9E-06 53.2 7.2 24 189-212 365-388 (576)
420 cd03255 ABC_MJ0796_Lo1CDE_FtsE 93.5 0.057 1.2E-06 49.3 2.9 23 190-212 30-52 (218)
421 cd01672 TMPK Thymidine monopho 93.5 0.055 1.2E-06 48.2 2.8 21 192-212 2-22 (200)
422 PF03193 DUF258: Protein of un 93.5 0.11 2.4E-06 45.0 4.5 37 173-214 23-59 (161)
423 cd01862 Rab7 Rab7 subfamily. 93.5 0.058 1.3E-06 46.7 2.9 21 193-213 3-23 (172)
424 smart00173 RAS Ras subfamily o 93.5 0.058 1.3E-06 46.4 2.8 21 193-213 3-23 (164)
425 COG1224 TIP49 DNA helicase TIP 93.5 0.13 2.8E-06 49.8 5.2 48 165-212 37-87 (450)
426 cd03225 ABC_cobalt_CbiO_domain 93.5 0.059 1.3E-06 48.9 2.9 23 190-212 27-49 (211)
427 PRK07196 fliI flagellum-specif 93.5 0.11 2.5E-06 52.3 5.1 24 190-213 155-178 (434)
428 PRK08356 hypothetical protein; 93.5 0.071 1.5E-06 47.9 3.4 22 190-211 5-26 (195)
429 TIGR00231 small_GTP small GTP- 93.5 0.063 1.4E-06 45.1 2.9 23 192-214 3-25 (161)
430 cd04119 RJL RJL (RabJ-Like) su 93.4 0.061 1.3E-06 46.2 2.9 21 193-213 3-23 (168)
431 PRK10463 hydrogenase nickel in 93.4 0.11 2.5E-06 49.4 4.8 25 188-212 102-126 (290)
432 PRK10789 putative multidrug tr 93.4 0.2 4.3E-06 52.9 7.2 24 189-212 340-363 (569)
433 TIGR01041 ATP_syn_B_arch ATP s 93.4 0.093 2E-06 53.3 4.5 82 191-272 142-248 (458)
434 TIGR01166 cbiO cobalt transpor 93.4 0.062 1.3E-06 47.9 2.9 23 190-212 18-40 (190)
435 cd04155 Arl3 Arl3 subfamily. 93.4 0.059 1.3E-06 46.9 2.7 24 190-213 14-37 (173)
436 PF06068 TIP49: TIP49 C-termin 93.4 0.13 2.8E-06 50.3 5.2 47 166-212 23-72 (398)
437 PRK01184 hypothetical protein; 93.4 0.062 1.3E-06 47.6 2.9 19 191-209 2-20 (184)
438 COG3840 ThiQ ABC-type thiamine 93.4 0.34 7.3E-06 42.7 7.2 23 190-212 25-47 (231)
439 TIGR00960 3a0501s02 Type II (G 93.4 0.062 1.3E-06 49.0 2.9 23 190-212 29-51 (216)
440 COG0410 LivF ABC-type branched 93.4 0.17 3.6E-06 46.2 5.5 26 190-215 29-54 (237)
441 COG1120 FepC ABC-type cobalami 93.4 0.061 1.3E-06 50.2 2.9 23 190-212 28-50 (258)
442 TIGR01650 PD_CobS cobaltochela 93.4 0.19 4.1E-06 48.7 6.3 46 162-212 41-86 (327)
443 PF10662 PduV-EutP: Ethanolami 93.4 0.069 1.5E-06 45.2 2.9 24 191-214 2-25 (143)
444 PRK06002 fliI flagellum-specif 93.4 0.1 2.2E-06 52.7 4.7 24 190-213 165-188 (450)
445 cd03229 ABC_Class3 This class 93.3 0.066 1.4E-06 47.3 2.9 24 190-213 26-49 (178)
446 cd04159 Arl10_like Arl10-like 93.3 0.077 1.7E-06 44.9 3.3 21 193-213 2-22 (159)
447 cd04113 Rab4 Rab4 subfamily. 93.3 0.066 1.4E-06 45.9 2.9 21 193-213 3-23 (161)
448 TIGR03258 PhnT 2-aminoethylpho 93.3 0.23 5E-06 49.2 7.0 23 190-212 31-53 (362)
449 PRK11607 potG putrescine trans 93.3 0.27 5.8E-06 49.0 7.4 23 190-212 45-67 (377)
450 TIGR02640 gas_vesic_GvpN gas v 93.3 0.069 1.5E-06 50.4 3.1 34 175-212 10-43 (262)
451 PRK03731 aroL shikimate kinase 93.3 0.06 1.3E-06 47.1 2.5 21 192-212 4-24 (171)
452 COG1116 TauB ABC-type nitrate/ 93.2 0.068 1.5E-06 49.3 2.9 23 190-212 29-51 (248)
453 PRK13695 putative NTPase; Prov 93.2 0.062 1.3E-06 47.3 2.6 22 192-213 2-23 (174)
454 cd03284 ABC_MutS1 MutS1 homolo 93.2 0.16 3.4E-06 46.5 5.3 21 191-211 31-51 (216)
455 COG0194 Gmk Guanylate kinase [ 93.2 0.076 1.7E-06 46.8 3.0 25 190-214 4-28 (191)
456 COG1135 AbcC ABC-type metal io 93.2 0.3 6.4E-06 46.6 7.1 53 253-305 150-206 (339)
457 PRK14532 adenylate kinase; Pro 93.2 0.062 1.3E-06 47.8 2.6 20 193-212 3-22 (188)
458 cd03297 ABC_ModC_molybdenum_tr 93.2 0.075 1.6E-06 48.4 3.2 22 191-212 24-45 (214)
459 PF01078 Mg_chelatase: Magnesi 93.2 0.15 3.3E-06 45.9 5.0 42 167-212 3-44 (206)
460 PLN03186 DNA repair protein RA 93.2 0.18 3.8E-06 49.5 5.9 94 179-272 112-228 (342)
461 PRK05922 type III secretion sy 93.2 0.1 2.3E-06 52.5 4.4 24 190-213 157-180 (434)
462 smart00175 RAB Rab subfamily o 93.2 0.072 1.6E-06 45.6 2.9 21 193-213 3-23 (164)
463 cd01130 VirB11-like_ATPase Typ 93.2 0.079 1.7E-06 47.2 3.2 34 176-212 14-47 (186)
464 cd04138 H_N_K_Ras_like H-Ras/N 93.2 0.07 1.5E-06 45.5 2.8 21 193-213 4-24 (162)
465 cd03269 ABC_putative_ATPase Th 93.1 0.072 1.6E-06 48.3 2.9 24 190-213 26-49 (210)
466 cd03261 ABC_Org_Solvent_Resist 93.1 0.071 1.5E-06 49.3 2.9 23 190-212 26-48 (235)
467 PRK10416 signal recognition pa 93.1 0.081 1.8E-06 51.4 3.4 24 189-212 113-136 (318)
468 TIGR02673 FtsE cell division A 93.1 0.073 1.6E-06 48.4 2.9 23 190-212 28-50 (214)
469 cd02022 DPCK Dephospho-coenzym 93.1 0.06 1.3E-06 47.6 2.3 21 192-212 1-21 (179)
470 PRK08099 bifunctional DNA-bind 93.1 0.065 1.4E-06 53.7 2.8 25 189-213 218-242 (399)
471 PF06414 Zeta_toxin: Zeta toxi 93.1 0.12 2.5E-06 46.7 4.2 97 188-287 13-117 (199)
472 cd03259 ABC_Carb_Solutes_like 93.1 0.074 1.6E-06 48.4 2.9 23 190-212 26-48 (213)
473 TIGR02315 ABC_phnC phosphonate 93.1 0.072 1.6E-06 49.5 2.9 23 190-212 28-50 (243)
474 COG4133 CcmA ABC-type transpor 93.1 0.95 2.1E-05 40.1 9.5 55 249-303 135-192 (209)
475 PRK08769 DNA polymerase III su 93.1 1.3 2.8E-05 43.0 11.6 122 174-302 11-154 (319)
476 cd00876 Ras Ras family. The R 93.1 0.085 1.8E-06 44.9 3.2 21 193-213 2-22 (160)
477 cd03293 ABC_NrtD_SsuB_transpor 93.1 0.075 1.6E-06 48.6 2.9 24 190-213 30-53 (220)
478 TIGR00382 clpX endopeptidase C 93.1 0.081 1.8E-06 53.1 3.4 47 166-212 76-138 (413)
479 cd03222 ABC_RNaseL_inhibitor T 93.0 0.074 1.6E-06 47.1 2.7 102 190-304 25-135 (177)
480 cd03235 ABC_Metallic_Cations A 93.0 0.074 1.6E-06 48.4 2.9 24 190-213 25-48 (213)
481 cd00154 Rab Rab family. Rab G 93.0 0.078 1.7E-06 44.8 2.8 21 193-213 3-23 (159)
482 smart00072 GuKc Guanylate kina 93.0 0.083 1.8E-06 47.0 3.1 24 190-213 2-25 (184)
483 PRK13541 cytochrome c biogenes 93.0 0.078 1.7E-06 47.6 2.9 24 190-213 26-49 (195)
484 cd03256 ABC_PhnC_transporter A 93.0 0.076 1.6E-06 49.3 2.9 23 190-212 27-49 (241)
485 cd00879 Sar1 Sar1 subfamily. 93.0 0.13 2.8E-06 45.5 4.4 24 190-213 19-42 (190)
486 TIGR03496 FliI_clade1 flagella 93.0 0.25 5.3E-06 49.7 6.7 81 190-272 137-237 (411)
487 PRK06964 DNA polymerase III su 93.0 0.86 1.9E-05 44.7 10.3 44 261-304 131-176 (342)
488 cd03264 ABC_drug_resistance_li 93.0 0.07 1.5E-06 48.4 2.6 21 192-212 27-47 (211)
489 TIGR01039 atpD ATP synthase, F 93.0 0.15 3.2E-06 51.6 5.1 82 190-272 143-247 (461)
490 PRK15453 phosphoribulokinase; 93.0 0.082 1.8E-06 50.0 3.1 24 189-212 4-27 (290)
491 COG4107 PhnK ABC-type phosphon 93.0 0.081 1.8E-06 46.1 2.8 23 190-212 32-54 (258)
492 cd02026 PRK Phosphoribulokinas 93.0 0.063 1.4E-06 51.0 2.3 21 192-212 1-21 (273)
493 PRK06761 hypothetical protein; 93.0 0.075 1.6E-06 50.5 2.8 23 191-213 4-26 (282)
494 cd03292 ABC_FtsE_transporter F 93.0 0.079 1.7E-06 48.1 2.9 24 190-213 27-50 (214)
495 cd04124 RabL2 RabL2 subfamily. 93.0 0.081 1.7E-06 45.6 2.9 21 193-213 3-23 (161)
496 PRK13768 GTPase; Provisional 92.9 0.081 1.8E-06 49.7 3.0 22 190-211 2-23 (253)
497 PRK06820 type III secretion sy 92.9 0.23 4.9E-06 50.3 6.3 24 190-213 163-186 (440)
498 cd01864 Rab19 Rab19 subfamily. 92.9 0.08 1.7E-06 45.7 2.8 23 191-213 4-26 (165)
499 TIGR02546 III_secr_ATP type II 92.9 0.27 5.9E-06 49.6 6.9 24 190-213 145-168 (422)
500 PF00071 Ras: Ras family; Int 92.9 0.087 1.9E-06 45.2 3.0 21 193-213 2-22 (162)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=2.6e-56 Score=476.23 Aligned_cols=366 Identities=21% Similarity=0.340 Sum_probs=292.9
Q ss_pred HHHhHHHHHHHHHHHHHHHhhhhccCChhHHHHHHHHHHHhhhhHHHHHHHHHHHhhhcCCCcc----------ccccc-
Q 040913 50 LLANYEADMALLLFQLLRKKINEDVKRPDILKILEDVNQFVHESEEVIDTFFINIMQQQNSEEE----------SESST- 118 (425)
Q Consensus 50 ~l~~l~~d~~~l~~~~l~~a~~~~~~~~~v~~Wl~~lr~layd~eD~lD~~~~~~~~~~~~~~~----------~~~~~- 118 (425)
.+.++++++..++ .++++++.++.....+..|...+++++|++||+++.|.......+..+.. ++..+
T Consensus 29 ~i~~Lk~~L~~l~-~~l~d~~a~~~~~~~~~~~~e~~~~~~~~~e~~~~~~~v~~~~~~~~~~l~~~~~~~~~~c~~~~~ 107 (889)
T KOG4658|consen 29 YILELKENLKALQ-SALEDLDAKRDDLERRVNWEEDVGDLVYLAEDIIWLFLVEEIERKANDLLSTRSVERQRLCLCGFC 107 (889)
T ss_pred HHHHHHHHHHHHH-HHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhHHHHHHHhhhhhH
Confidence 5666676766665 68999999999999999999999999999999999999887665332210 11111
Q ss_pred --chhhhhHHHHHHHHHHHHHhccCCCCCCCCccCC--CcccccCCCCCCCCCCcccchhhHHHHHHHHhcCCCCcEEEE
Q 040913 119 --NMALLVGLHSKIIDIRNRMQQLPPGDNGFDINEQ--RDELIHLSSEGQPRLDISEFERAREEWFDLLIEGPIGLSVVA 194 (425)
Q Consensus 119 --~~~~r~~i~~~i~~i~~~l~~i~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~ 194 (425)
.....+.+++++-.+...++.+..+.. +..... .+....++.|..+..+ ||.+..++++.+.|..++. .+++
T Consensus 108 ~~~~~~~~~~~~rv~~~l~~ve~l~~~~~-~~~~~~~~~~~~~~e~~~~~~~~~-VG~e~~~~kl~~~L~~d~~--~iv~ 183 (889)
T KOG4658|consen 108 SKNVSDSYKYGKRVSKVLREVESLGSKGV-FEVVGESLDPREKVETRPIQSESD-VGLETMLEKLWNRLMEDDV--GIVG 183 (889)
T ss_pred hHhhhhhHhHHHHHHHHHHHHHHhccccc-eecccccccchhhcccCCCCcccc-ccHHHHHHHHHHHhccCCC--CEEE
Confidence 333334455555555555554442211 111110 0111122445555555 9999999999999999874 8999
Q ss_pred EEecCCCchHHHHHHhhcCcc-ccccccchHHH-----------HHHHHHHhCCCCCCCccCCCCHHHHHHHHHHHhcCC
Q 040913 195 ILDSSGFDKTAFAADTYNNNH-VKFYFDCLAWI-----------LDDIIRSLMPPSRVTVIIGEDYKLKKSILRDFLTNK 262 (425)
Q Consensus 195 IvG~gGvGKTtLa~~v~~~~~-~~~~F~~~~wv-----------~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~k 262 (425)
|+||||+||||||+.++|+.. ++.+||..+|| .++|+..++.... .....+..+++..|.+.|++|
T Consensus 184 i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~~iq~~Il~~l~~~~~--~~~~~~~~~~~~~i~~~L~~k 261 (889)
T KOG4658|consen 184 IYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTTRKIQQTILERLGLLDE--EWEDKEEDELASKLLNLLEGK 261 (889)
T ss_pred EECCCcccHHHHHHHHhcccchhcccCceEEEEEEcccccHHhHHHHHHHHhccCCc--ccchhhHHHHHHHHHHHhccC
Confidence 999999999999999999988 99999999999 5666666665433 233334479999999999999
Q ss_pred eEEEEecccCCChhhHHHHHhhCCCCCCCcEEEEecCChhHHHH------------------hcCcC-------------
Q 040913 263 KYFIALDDVCHNIEIWDDLEEVLPDNQNGSRVLITVINPSLLTS------------------FELLN------------- 311 (425)
Q Consensus 263 r~LlVLDdvw~~~~~~~~l~~~l~~~~~gskIivTTR~~~va~~------------------~~Lf~------------- 311 (425)
|||||||||| +..+|+.++.++|...+||||++|||++.||.. |.||.
T Consensus 262 rfllvLDDIW-~~~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~~~~~v~~L~~~eaW~LF~~~v~~~~~~~~~~ 340 (889)
T KOG4658|consen 262 RFLLVLDDIW-EEVDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVDYPIEVECLTPEEAWDLFQKKVGPNTLGSHPD 340 (889)
T ss_pred ceEEEEeccc-ccccHHhcCCCCCCccCCeEEEEEeccHhhhhccccCCccccccccCccccHHHHHHhhcccccccccc
Confidence 9999999999 999999999999999889999999999999987 99994
Q ss_pred ----CCCc--ccc-----chhhhccccCCChH-HHHHHHHHhchhc-cCCCCchHHHHHHhchhhcccCCChhhHHHHhh
Q 040913 312 ----GEKI--RCD-----YVLVEGPLIRIKHS-AWQFFVLHYGSAA-LGNYMDEKMVLAVLSRTCSVFELPLHLKVCCIY 378 (425)
Q Consensus 312 ----~~~I--kC~-----i~~~g~~L~~~~~~-~w~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~sy~~Lp~~lk~cfly 378 (425)
|++| +|+ ++++|+.|+.|+.. +|+++.+.+.+.. .+.+.+++.++++|+ +||++||+++|.||+|
T Consensus 341 i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~~~~i~~iLk--lSyd~L~~~lK~CFLy 418 (889)
T KOG4658|consen 341 IEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGMEESILPILK--LSYDNLPEELKSCFLY 418 (889)
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCchhhhhHHhhh--ccHhhhhHHHHHHHHh
Confidence 5666 887 99999999999999 9999999998773 333333448999999 9999999999999999
Q ss_pred hhccCCCCcccHHHHHHHHHHcCCCC-----CCHHHHHHHHHHHHHHCcCCC
Q 040913 379 LCVFRPGIEISSRQLCQLWIAEGFIP-----YNSEETAELYLKELIHRGFIQ 425 (425)
Q Consensus 379 ~sifP~~~~i~~~~Li~~Wiaeg~i~-----~~~e~~a~~~~~eLv~r~llq 425 (425)
||+||+||+|+++.||.+|+||||+. .++++.|..|+++||++||++
T Consensus 419 calFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~ 470 (889)
T KOG4658|consen 419 CALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLI 470 (889)
T ss_pred hccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHh
Confidence 99999999999999999999999997 578899999999999999974
No 2
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=1.7e-40 Score=318.37 Aligned_cols=229 Identities=30% Similarity=0.505 Sum_probs=186.1
Q ss_pred chhhHHHHHHHHhcCCCCcEEEEEEecCCCchHHHHHHhhcCccccccccchHHH-----------HHHHHHHhCCCCCC
Q 040913 172 FERAREEWFDLLIEGPIGLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWI-----------LDDIIRSLMPPSRV 240 (425)
Q Consensus 172 r~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLa~~v~~~~~~~~~F~~~~wv-----------~~~il~~l~~~~~~ 240 (425)
||.++++|.+.|.....+.++|+|+||||+||||||..++++..++.+|+.++|+ +..|+.++......
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~ 80 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSS 80 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-ST
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccccccc
Confidence 6889999999999966789999999999999999999999977799999999999 77888888877441
Q ss_pred CccCCCCHHHHHHHHHHHhcCCeEEEEecccCCChhhHHHHHhhCCCCCCCcEEEEecCChhHHHH--------------
Q 040913 241 TVIIGEDYKLKKSILRDFLTNKKYFIALDDVCHNIEIWDDLEEVLPDNQNGSRVLITVINPSLLTS-------------- 306 (425)
Q Consensus 241 ~~~~~~~~~~l~~~l~~~l~~kr~LlVLDdvw~~~~~~~~l~~~l~~~~~gskIivTTR~~~va~~-------------- 306 (425)
.....+.+.+...+.+.|+++++|||||||| +...|+.+...++....||+||||||+..++..
T Consensus 81 -~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~-~~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l~~L~ 158 (287)
T PF00931_consen 81 -ISDPKDIEELQDQLRELLKDKRCLLVLDDVW-DEEDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIELEPLS 158 (287)
T ss_dssp -SSCCSSHHHHHHHHHHHHCCTSEEEEEEEE--SHHHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEECSS--
T ss_pred -cccccccccccccchhhhccccceeeeeeec-ccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 1145678889999999999999999999999 999999999888887789999999999998764
Q ss_pred ----hcCcC-----------------CCCc--ccc-----chhhhccccCCChH-HHHHHHHHhchhccCCCCchHHHHH
Q 040913 307 ----FELLN-----------------GEKI--RCD-----YVLVEGPLIRIKHS-AWQFFVLHYGSAALGNYMDEKMVLA 357 (425)
Q Consensus 307 ----~~Lf~-----------------~~~I--kC~-----i~~~g~~L~~~~~~-~w~~~~~~~~~~~~~~~~~~~~~~~ 357 (425)
++||. +++| +|+ ++++|+.|+.++.. +|+++++++.............+..
T Consensus 159 ~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~ 238 (287)
T PF00931_consen 159 EEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYDRSVFS 238 (287)
T ss_dssp HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSCHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 55663 2344 787 99999999776644 9999999887766433221228999
Q ss_pred HhchhhcccCCChhhHHHHhhhhccCCCCcccHHHHHHHHHHcCCCC
Q 040913 358 VLSRTCSVFELPLHLKVCCIYLCVFRPGIEISSRQLCQLWIAEGFIP 404 (425)
Q Consensus 358 ~l~~~~sy~~Lp~~lk~cfly~sifP~~~~i~~~~Li~~Wiaeg~i~ 404 (425)
++. +||+.||+++|.||+|||+||+++.|+++.|+++|+|||||+
T Consensus 239 ~l~--~s~~~L~~~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~ 283 (287)
T PF00931_consen 239 ALE--LSYDSLPDELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFIS 283 (287)
T ss_dssp HHH--HHHHSSHTCCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC
T ss_pred cce--echhcCCccHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCc
Confidence 999 999999999999999999999999999999999999999995
No 3
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.97 E-value=4.9e-31 Score=294.86 Aligned_cols=235 Identities=17% Similarity=0.212 Sum_probs=184.5
Q ss_pred CCCCCcccchhhHHHHHHHHhcCCCCcEEEEEEecCCCchHHHHHHhhcCccccccccchHHH-----------------
Q 040913 164 QPRLDISEFERAREEWFDLLIEGPIGLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWI----------------- 226 (425)
Q Consensus 164 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLa~~v~~~~~~~~~F~~~~wv----------------- 226 (425)
.+..++||++..++++..+|.-+....++|+||||||+||||||+++|+ ++..+|+..+|+
T Consensus 181 ~~~~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~--~l~~~F~g~vfv~~~~v~~~~~~~~~~~~ 258 (1153)
T PLN03210 181 NDFEDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFS--RLSRQFQSSVFIDRAFISKSMEIYSSANP 258 (1153)
T ss_pred cccccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHH--HHhhcCCeEEEeeccccccchhhcccccc
Confidence 3456799999999999999876666799999999999999999999999 777788766543
Q ss_pred ---------HHHHHHHhCCCCCCCccCCCCHHHHHHHHHHHhcCCeEEEEecccCCChhhHHHHHhhCCCCCCCcEEEEe
Q 040913 227 ---------LDDIIRSLMPPSRVTVIIGEDYKLKKSILRDFLTNKKYFIALDDVCHNIEIWDDLEEVLPDNQNGSRVLIT 297 (425)
Q Consensus 227 ---------~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~kr~LlVLDdvw~~~~~~~~l~~~l~~~~~gskIivT 297 (425)
...++.++..... ..... ...+++.|++||+|||||||| +...|+.+.......++||+||||
T Consensus 259 ~~~~~~~~l~~~~l~~il~~~~---~~~~~----~~~~~~~L~~krvLLVLDdv~-~~~~l~~L~~~~~~~~~GsrIIiT 330 (1153)
T PLN03210 259 DDYNMKLHLQRAFLSEILDKKD---IKIYH----LGAMEERLKHRKVLIFIDDLD-DQDVLDALAGQTQWFGSGSRIIVI 330 (1153)
T ss_pred cccchhHHHHHHHHHHHhCCCC---cccCC----HHHHHHHHhCCeEEEEEeCCC-CHHHHHHHHhhCccCCCCcEEEEE
Confidence 1122223222211 00011 145778899999999999999 999999998776666789999999
Q ss_pred cCChhHHHH-----------------hcCcC----------------CCCc--ccc-----chhhhccccCCChHHHHHH
Q 040913 298 VINPSLLTS-----------------FELLN----------------GEKI--RCD-----YVLVEGPLIRIKHSAWQFF 337 (425)
Q Consensus 298 TR~~~va~~-----------------~~Lf~----------------~~~I--kC~-----i~~~g~~L~~~~~~~w~~~ 337 (425)
||+.+++.. |+||. +++| +|+ ++++|+.|+.++..+|+.+
T Consensus 331 Trd~~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k~~~~W~~~ 410 (1153)
T PLN03210 331 TKDKHFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKNSPPDGFMELASEVALRAGNLPLGLNVLGSYLRGRDKEDWMDM 410 (1153)
T ss_pred eCcHHHHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCCCHHHHHHH
Confidence 999998853 77773 3445 787 9999999999876699999
Q ss_pred HHHhchhccCCCCchHHHHHHhchhhcccCCChh-hHHHHhhhhccCCCCcccHHHHHHHHHHcCCCCCCHHHHHHHHHH
Q 040913 338 VLHYGSAALGNYMDEKMVLAVLSRTCSVFELPLH-LKVCCIYLCVFRPGIEISSRQLCQLWIAEGFIPYNSEETAELYLK 416 (425)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~l~~~~sy~~Lp~~-lk~cfly~sifP~~~~i~~~~Li~~Wiaeg~i~~~~e~~a~~~~~ 416 (425)
++++..... . .+..+|+ +||++||++ .|.||++||.||.+..++ .+..|+|++... ++.-++
T Consensus 411 l~~L~~~~~---~---~I~~~L~--~SYd~L~~~~~k~~Fl~ia~ff~~~~~~---~v~~~l~~~~~~------~~~~l~ 473 (1153)
T PLN03210 411 LPRLRNGLD---G---KIEKTLR--VSYDGLNNKKDKAIFRHIACLFNGEKVN---DIKLLLANSDLD------VNIGLK 473 (1153)
T ss_pred HHHHHhCcc---H---HHHHHHH--HhhhccCccchhhhhheehhhcCCCCHH---HHHHHHHhcCCC------chhChH
Confidence 999876432 1 8999999 999999875 999999999999997654 578888887662 233488
Q ss_pred HHHHCcCCC
Q 040913 417 ELIHRGFIQ 425 (425)
Q Consensus 417 eLv~r~llq 425 (425)
.|+++||++
T Consensus 474 ~L~~ksLi~ 482 (1153)
T PLN03210 474 NLVDKSLIH 482 (1153)
T ss_pred HHHhcCCEE
Confidence 999999974
No 4
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=98.58 E-value=3e-07 Score=92.27 Aligned_cols=108 Identities=18% Similarity=0.155 Sum_probs=72.1
Q ss_pred CCCCCCcccchhhHHHHHHHHhcC--CCCcEEEEEEecCCCchHHHHHHhhcCccccccccchHHH-----------HHH
Q 040913 163 GQPRLDISEFERAREEWFDLLIEG--PIGLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWI-----------LDD 229 (425)
Q Consensus 163 ~~~~~~~vGr~~~~~~l~~~L~~~--~~~~~vi~IvG~gGvGKTtLa~~v~~~~~~~~~F~~~~wv-----------~~~ 229 (425)
...+..++||+++.++|...|... ......+.|+|++|+|||++++.++++.......-..+++ +..
T Consensus 26 ~~~P~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~~ 105 (394)
T PRK00411 26 DYVPENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFSE 105 (394)
T ss_pred CCcCCCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHHH
Confidence 335567999999999999988543 2234557799999999999999999843211100011111 567
Q ss_pred HHHHhCCCCCCCccCCCCHHHHHHHHHHHhc--CCeEEEEecccC
Q 040913 230 IIRSLMPPSRVTVIIGEDYKLKKSILRDFLT--NKKYFIALDDVC 272 (425)
Q Consensus 230 il~~l~~~~~~~~~~~~~~~~l~~~l~~~l~--~kr~LlVLDdvw 272 (425)
|+.++..... .....+..++...+.+.+. ++..+||||+++
T Consensus 106 i~~~l~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d 148 (394)
T PRK00411 106 IARQLFGHPP--PSSGLSFDELFDKIAEYLDERDRVLIVALDDIN 148 (394)
T ss_pred HHHHhcCCCC--CCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHh
Confidence 7777765211 1123456777778887775 456899999997
No 5
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.33 E-value=4.8e-06 Score=78.88 Aligned_cols=88 Identities=17% Similarity=0.228 Sum_probs=52.6
Q ss_pred cEEEEEEecCCCchHHHHHHhhcCccccccccchHHH----------HHHHHHHhCCCCCCCccCCCCHHHHHHHHHHH-
Q 040913 190 LSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWI----------LDDIIRSLMPPSRVTVIIGEDYKLKKSILRDF- 258 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~~~~~~~~F~~~~wv----------~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~- 258 (425)
.+++.|+|++|+|||||++.+++...... + ..+|+ +..|...++.+.. ..+...+...+...
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l~~~~-~-~~~~~~~~~~~~~~~l~~i~~~lG~~~~-----~~~~~~~~~~l~~~l 115 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRLDQER-V-VAAKLVNTRVDAEDLLRMVAADFGLETE-----GRDKAALLRELEDFL 115 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhcCCCC-e-EEeeeeCCCCCHHHHHHHHHHHcCCCCC-----CCCHHHHHHHHHHHH
Confidence 56789999999999999999998533211 1 11121 4455555544322 12223333333332
Q ss_pred ---h-cCCeEEEEecccCC-ChhhHHHHHhh
Q 040913 259 ---L-TNKKYFIALDDVCH-NIEIWDDLEEV 284 (425)
Q Consensus 259 ---l-~~kr~LlVLDdvw~-~~~~~~~l~~~ 284 (425)
. .+++++||+||++. +...++.+...
T Consensus 116 ~~~~~~~~~~vliiDe~~~l~~~~~~~l~~l 146 (269)
T TIGR03015 116 IEQFAAGKRALLVVDEAQNLTPELLEELRML 146 (269)
T ss_pred HHHHhCCCCeEEEEECcccCCHHHHHHHHHH
Confidence 2 67889999999983 23466666543
No 6
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=98.32 E-value=1.5e-06 Score=86.16 Aligned_cols=107 Identities=20% Similarity=0.075 Sum_probs=69.0
Q ss_pred CCCCcccchhhHHHHHHHHhcC--CCCcEEEEEEecCCCchHHHHHHhhcCcccc-cc----c-----cch-----HHHH
Q 040913 165 PRLDISEFERAREEWFDLLIEG--PIGLSVVAILDSSGFDKTAFAADTYNNNHVK-FY----F-----DCL-----AWIL 227 (425)
Q Consensus 165 ~~~~~vGr~~~~~~l~~~L~~~--~~~~~vi~IvG~gGvGKTtLa~~v~~~~~~~-~~----F-----~~~-----~wv~ 227 (425)
.+..++||+.++++|...|... ......+.|+|++|+|||++++.+++.-.-. .. | +|. .-++
T Consensus 13 ~p~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~ 92 (365)
T TIGR02928 13 VPDRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVL 92 (365)
T ss_pred CCCCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHH
Confidence 3457999999999999998752 2234568899999999999999998732100 00 1 110 1116
Q ss_pred HHHHHHhCC-CCCCCccCCCCHHHHHHHHHHHhc--CCeEEEEecccC
Q 040913 228 DDIIRSLMP-PSRVTVIIGEDYKLKKSILRDFLT--NKKYFIALDDVC 272 (425)
Q Consensus 228 ~~il~~l~~-~~~~~~~~~~~~~~l~~~l~~~l~--~kr~LlVLDdvw 272 (425)
..|+.++.. .... .....+..++...+.+.+. +++++||||+++
T Consensus 93 ~~i~~~l~~~~~~~-~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d 139 (365)
T TIGR02928 93 VELANQLRGSGEEV-PTTGLSTSEVFRRLYKELNERGDSLIIVLDEID 139 (365)
T ss_pred HHHHHHHhhcCCCC-CCCCCCHHHHHHHHHHHHHhcCCeEEEEECchh
Confidence 777777742 1000 1122345566666666664 568899999997
No 7
>PF13173 AAA_14: AAA domain
Probab=98.31 E-value=1.1e-06 Score=73.54 Aligned_cols=96 Identities=17% Similarity=0.249 Sum_probs=62.6
Q ss_pred cEEEEEEecCCCchHHHHHHhhcCccccccccchHHHHHHHHHHhCCCCCCCccCCCCHH-----HHHHHHHHHhcCCeE
Q 040913 190 LSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWILDDIIRSLMPPSRVTVIIGEDYK-----LKKSILRDFLTNKKY 264 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~~il~~l~~~~~~~~~~~~~~~-----~l~~~l~~~l~~kr~ 264 (425)
.+++.|.|+.|+|||||+++++++.. .....+++ ..+..... ++.+.+.+....+..
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~---~~~~~~yi---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 63 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLL---PPENILYI---------------NFDDPRDRRLADPDLLEYFLELIKPGKK 63 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc---ccccceee---------------ccCCHHHHHHhhhhhHHHHHHhhccCCc
Confidence 46889999999999999999887422 01111111 00000000 033444444445788
Q ss_pred EEEecccCCChhhHHHHHhhCCCCCCCcEEEEecCChhHH
Q 040913 265 FIALDDVCHNIEIWDDLEEVLPDNQNGSRVLITVINPSLL 304 (425)
Q Consensus 265 LlVLDdvw~~~~~~~~l~~~l~~~~~gskIivTTR~~~va 304 (425)
+|+||++. ....|......+-+..+..+|++|+.+....
T Consensus 64 ~i~iDEiq-~~~~~~~~lk~l~d~~~~~~ii~tgS~~~~l 102 (128)
T PF13173_consen 64 YIFIDEIQ-YLPDWEDALKFLVDNGPNIKIILTGSSSSLL 102 (128)
T ss_pred EEEEehhh-hhccHHHHHHHHHHhccCceEEEEccchHHH
Confidence 99999998 7778888777776666678999999886655
No 8
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=98.31 E-value=8.9e-06 Score=78.65 Aligned_cols=47 Identities=17% Similarity=0.201 Sum_probs=38.4
Q ss_pred CCcccchhhHHHHHHHHhcC---CCCcEEEEEEecCCCchHHHHHHhhcC
Q 040913 167 LDISEFERAREEWFDLLIEG---PIGLSVVAILDSSGFDKTAFAADTYNN 213 (425)
Q Consensus 167 ~~~vGr~~~~~~l~~~L~~~---~~~~~vi~IvG~gGvGKTtLa~~v~~~ 213 (425)
.+|+|++..++.|..++... ......+.++|++|+|||+||+.+.+.
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~ 53 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANE 53 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999998888642 223556779999999999999999883
No 9
>PF05729 NACHT: NACHT domain
Probab=98.30 E-value=9.9e-07 Score=76.72 Aligned_cols=107 Identities=19% Similarity=0.229 Sum_probs=59.4
Q ss_pred EEEEEEecCCCchHHHHHHhhcCcccccc----ccchHHH----------HHHHHHHhCCCCCCCccCCCCHHHHHHHHH
Q 040913 191 SVVAILDSSGFDKTAFAADTYNNNHVKFY----FDCLAWI----------LDDIIRSLMPPSRVTVIIGEDYKLKKSILR 256 (425)
Q Consensus 191 ~vi~IvG~gGvGKTtLa~~v~~~~~~~~~----F~~~~wv----------~~~il~~l~~~~~~~~~~~~~~~~l~~~l~ 256 (425)
+++.|+|.+|+||||+++.+...-..... +...+|. ...+...+...... ........+.
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~------~~~~~~~~~~ 74 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPE------SIAPIEELLQ 74 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhcc------chhhhHHHHH
Confidence 47889999999999999998874322221 2223333 11233333222211 0111111222
Q ss_pred HHh-cCCeEEEEecccCCChh---------hHHH-HHhhCCC-CCCCcEEEEecCChhHH
Q 040913 257 DFL-TNKKYFIALDDVCHNIE---------IWDD-LEEVLPD-NQNGSRVLITVINPSLL 304 (425)
Q Consensus 257 ~~l-~~kr~LlVLDdvw~~~~---------~~~~-l~~~l~~-~~~gskIivTTR~~~va 304 (425)
..+ +.++++||+|++. +.. .+.. +...++. ..++++++||||.....
T Consensus 75 ~~~~~~~~~llilDglD-E~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~ 133 (166)
T PF05729_consen 75 ELLEKNKRVLLILDGLD-ELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFP 133 (166)
T ss_pred HHHHcCCceEEEEechH-hcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHH
Confidence 222 5789999999996 321 1222 3333443 35689999999987753
No 10
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=98.28 E-value=3.4e-05 Score=75.45 Aligned_cols=49 Identities=18% Similarity=0.148 Sum_probs=39.6
Q ss_pred CCCCcccchhhHHHHHHHHhc---CCCCcEEEEEEecCCCchHHHHHHhhcC
Q 040913 165 PRLDISEFERAREEWFDLLIE---GPIGLSVVAILDSSGFDKTAFAADTYNN 213 (425)
Q Consensus 165 ~~~~~vGr~~~~~~l~~~L~~---~~~~~~vi~IvG~gGvGKTtLa~~v~~~ 213 (425)
.-.+++|++..++.+..++.. .......+.++|++|+||||||+.+.+.
T Consensus 23 ~~~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~ 74 (328)
T PRK00080 23 SLDEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANE 74 (328)
T ss_pred CHHHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHH
Confidence 345699999999998877764 2334567789999999999999999883
No 11
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.27 E-value=4.5e-06 Score=76.79 Aligned_cols=43 Identities=23% Similarity=0.298 Sum_probs=35.4
Q ss_pred cccchhhHHHHHHHHhcCCCCcEEEEEEecCCCchHHHHHHhhcC
Q 040913 169 ISEFERAREEWFDLLIEGPIGLSVVAILDSSGFDKTAFAADTYNN 213 (425)
Q Consensus 169 ~vGr~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLa~~v~~~ 213 (425)
|+||+.+.++|.+++..+. .+.+.|+|+.|+|||+|++.+.+.
T Consensus 1 F~gR~~el~~l~~~l~~~~--~~~~~l~G~rg~GKTsLl~~~~~~ 43 (234)
T PF01637_consen 1 FFGREKELEKLKELLESGP--SQHILLYGPRGSGKTSLLKEFINE 43 (234)
T ss_dssp S-S-HHHHHHHHHCHHH----SSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhhc--CcEEEEEcCCcCCHHHHHHHHHHH
Confidence 6899999999999998754 567889999999999999999883
No 12
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.21 E-value=4e-06 Score=70.72 Aligned_cols=42 Identities=24% Similarity=0.172 Sum_probs=34.6
Q ss_pred ccchhhHHHHHHHHhcCCCCcEEEEEEecCCCchHHHHHHhhcC
Q 040913 170 SEFERAREEWFDLLIEGPIGLSVVAILDSSGFDKTAFAADTYNN 213 (425)
Q Consensus 170 vGr~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLa~~v~~~ 213 (425)
.|++...+.+...+.... .+.+.|+|.+|+|||||++.+++.
T Consensus 1 ~~~~~~~~~i~~~~~~~~--~~~v~i~G~~G~GKT~l~~~i~~~ 42 (151)
T cd00009 1 VGQEEAIEALREALELPP--PKNLLLYGPPGTGKTTLARAIANE 42 (151)
T ss_pred CchHHHHHHHHHHHhCCC--CCeEEEECCCCCCHHHHHHHHHHH
Confidence 367788888888876643 567889999999999999999984
No 13
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.21 E-value=1.4e-06 Score=77.46 Aligned_cols=46 Identities=20% Similarity=0.107 Sum_probs=31.4
Q ss_pred CcccchhhHHHHHHHHhc-CCCCcEEEEEEecCCCchHHHHHHhhcC
Q 040913 168 DISEFERAREEWFDLLIE-GPIGLSVVAILDSSGFDKTAFAADTYNN 213 (425)
Q Consensus 168 ~~vGr~~~~~~l~~~L~~-~~~~~~vi~IvG~gGvGKTtLa~~v~~~ 213 (425)
.|+||+++.+++...|.. .....+.+.|+|.+|+|||+|.+.++..
T Consensus 1 ~fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~ 47 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDR 47 (185)
T ss_dssp --TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 389999999999999952 2345789999999999999999988773
No 14
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.04 E-value=9.9e-06 Score=67.71 Aligned_cols=103 Identities=16% Similarity=0.255 Sum_probs=63.0
Q ss_pred cEEEEEEecCCCchHHHHHHhhcCcccc----ccccchHHH-----------HHHHHHHhCCCCCCCccCCCCHHHHHHH
Q 040913 190 LSVVAILDSSGFDKTAFAADTYNNNHVK----FYFDCLAWI-----------LDDIIRSLMPPSRVTVIIGEDYKLKKSI 254 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~~~~~~----~~F~~~~wv-----------~~~il~~l~~~~~~~~~~~~~~~~l~~~ 254 (425)
.+++.|+|.+|+|||++++.+.++..-. .+ ...+|+ ...|+.++...... ..+...+.+.
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~----~~~~~~l~~~ 78 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNH-PDVIYVNCPSSRTPRDFAQEILEALGLPLKS----RQTSDELRSL 78 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCC-EEEEEEEHHHHSSHHHHHHHHHHHHT-SSSS----TS-HHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCC-CcEEEEEeCCCCCHHHHHHHHHHHhCccccc----cCCHHHHHHH
Confidence 5688999999999999999998842100 01 111132 67777777776541 3467778888
Q ss_pred HHHHhcCCe-EEEEecccCCCh---hhHHHHHhhCCCCCCCcEEEEecCC
Q 040913 255 LRDFLTNKK-YFIALDDVCHNI---EIWDDLEEVLPDNQNGSRVLITVIN 300 (425)
Q Consensus 255 l~~~l~~kr-~LlVLDdvw~~~---~~~~~l~~~l~~~~~gskIivTTR~ 300 (425)
+.+.+...+ .+||+|++. .- ..++.++.... ..+.++|+..+.
T Consensus 79 ~~~~l~~~~~~~lviDe~~-~l~~~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 79 LIDALDRRRVVLLVIDEAD-HLFSDEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp HHHHHHHCTEEEEEEETTH-HHHTHHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred HHHHHHhcCCeEEEEeChH-hcCCHHHHHHHHHHHh--CCCCeEEEEECh
Confidence 888887654 599999996 33 34444544433 556677766544
No 15
>PTZ00202 tuzin; Provisional
Probab=98.03 E-value=5.1e-05 Score=75.03 Aligned_cols=137 Identities=14% Similarity=0.065 Sum_probs=84.2
Q ss_pred CCCCCCCCCcccchhhHHHHHHHHhcCC-CCcEEEEEEecCCCchHHHHHHhhcCccccccc-c--chHHHHHHHHHHhC
Q 040913 160 SSEGQPRLDISEFERAREEWFDLLIEGP-IGLSVVAILDSSGFDKTAFAADTYNNNHVKFYF-D--CLAWILDDIIRSLM 235 (425)
Q Consensus 160 ~~~~~~~~~~vGr~~~~~~l~~~L~~~~-~~~~vi~IvG~gGvGKTtLa~~v~~~~~~~~~F-~--~~~wv~~~il~~l~ 235 (425)
.+.+.+...|+||+.+...+...|...+ ...+++.|.|++|+|||||++.+......-..| + ...+++..|+.+++
T Consensus 255 ~~lPa~~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l~~~qL~vNprg~eElLr~LL~ALG 334 (550)
T PTZ00202 255 QSAPAVIRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKEGMPAVFVDVRGTEDTLRSVVKALG 334 (550)
T ss_pred cCCCCCccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcCCceEEEECCCCHHHHHHHHHHHcC
Confidence 3445567789999999999999987543 335689999999999999999988743321111 1 12344888899988
Q ss_pred CCCCCCccCCCCHHHHHHHHHHHh-----c-CCeEEEEecccCCChhhHHHHH---hhCCCCCCCcEEEEecCChhHH
Q 040913 236 PPSRVTVIIGEDYKLKKSILRDFL-----T-NKKYFIALDDVCHNIEIWDDLE---EVLPDNQNGSRVLITVINPSLL 304 (425)
Q Consensus 236 ~~~~~~~~~~~~~~~l~~~l~~~l-----~-~kr~LlVLDdvw~~~~~~~~l~---~~l~~~~~gskIivTTR~~~va 304 (425)
.+.. ....++...|.+.+ . |++.+||+- +. +.+.+..+- ..|.....-|.|++---.+++.
T Consensus 335 V~p~------~~k~dLLrqIqeaLl~~~~e~GrtPVLII~-lr-eg~~l~rvyne~v~la~drr~ch~v~evpleslt 404 (550)
T PTZ00202 335 VPNV------EACGDLLDFISEACRRAKKMNGETPLLVLK-LR-EGSSLQRVYNEVVALACDRRLCHVVIEVPLESLT 404 (550)
T ss_pred CCCc------ccHHHHHHHHHHHHHHHHHhCCCCEEEEEE-ec-CCCcHHHHHHHHHHHHccchhheeeeeehHhhcc
Confidence 6432 22344555555544 2 567777765 33 333332221 1233334456777665554443
No 16
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.02 E-value=1.2e-05 Score=81.23 Aligned_cols=108 Identities=19% Similarity=0.157 Sum_probs=63.0
Q ss_pred CCcccchhhHHH---HHHHHhcCCCCcEEEEEEecCCCchHHHHHHhhcCccccccccchHHHHHHHHHHhCCCCCCCcc
Q 040913 167 LDISEFERAREE---WFDLLIEGPIGLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWILDDIIRSLMPPSRVTVI 243 (425)
Q Consensus 167 ~~~vGr~~~~~~---l~~~L~~~~~~~~vi~IvG~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~~il~~l~~~~~~~~~ 243 (425)
.+++|.+..+.. +..++..+. ...+.++|++|+||||||+.+.+ .....|...-- . ..
T Consensus 12 ~d~vGq~~~v~~~~~L~~~i~~~~--~~~ilL~GppGtGKTtLA~~ia~--~~~~~~~~l~a-----------~----~~ 72 (413)
T PRK13342 12 DEVVGQEHLLGPGKPLRRMIEAGR--LSSMILWGPPGTGKTTLARIIAG--ATDAPFEALSA-----------V----TS 72 (413)
T ss_pred HHhcCcHHHhCcchHHHHHHHcCC--CceEEEECCCCCCHHHHHHHHHH--HhCCCEEEEec-----------c----cc
Confidence 458888877555 777776554 55677899999999999999988 33333421000 0 00
Q ss_pred CCCCHHHHHHHHHHHh-cCCeEEEEecccCC-ChhhHHHHHhhCCCCCCCcEEEE
Q 040913 244 IGEDYKLKKSILRDFL-TNKKYFIALDDVCH-NIEIWDDLEEVLPDNQNGSRVLI 296 (425)
Q Consensus 244 ~~~~~~~l~~~l~~~l-~~kr~LlVLDdvw~-~~~~~~~l~~~l~~~~~gskIiv 296 (425)
...+...+........ .+++.+|++|+++. +....+.+...+.. |+.+++
T Consensus 73 ~~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le~---~~iilI 124 (413)
T PRK13342 73 GVKDLREVIEEARQRRSAGRRTILFIDEIHRFNKAQQDALLPHVED---GTITLI 124 (413)
T ss_pred cHHHHHHHHHHHHHhhhcCCceEEEEechhhhCHHHHHHHHHHhhc---CcEEEE
Confidence 0111222333322222 45888999999973 33455556555533 454444
No 17
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.02 E-value=4.9e-06 Score=77.64 Aligned_cols=82 Identities=13% Similarity=0.028 Sum_probs=52.6
Q ss_pred cEEEEEEecCCCchHHHHHHhhcCccccccccchHHH---------HHHHHHHh-----CCCCCCCccC-CCCHHHHHHH
Q 040913 190 LSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWI---------LDDIIRSL-----MPPSRVTVII-GEDYKLKKSI 254 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~~~~~~~~F~~~~wv---------~~~il~~l-----~~~~~~~~~~-~~~~~~l~~~ 254 (425)
-..++|+|++|+|||||++.+|++.... +|+..+|+ ..++++++ ......+... ..-.......
T Consensus 16 Gqr~~I~G~~G~GKTTLlr~I~n~l~~~-~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~~~ 94 (249)
T cd01128 16 GQRGLIVAPPKAGKTTLLQSIANAITKN-HPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVLEK 94 (249)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccccc-cCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHHHH
Confidence 3568899999999999999999965544 89998887 66777777 3322211000 0000112222
Q ss_pred HHHH-hcCCeEEEEecccC
Q 040913 255 LRDF-LTNKKYFIALDDVC 272 (425)
Q Consensus 255 l~~~-l~~kr~LlVLDdvw 272 (425)
...+ -.|++.++++|++-
T Consensus 95 a~~~~~~G~~vll~iDei~ 113 (249)
T cd01128 95 AKRLVEHGKDVVILLDSIT 113 (249)
T ss_pred HHHHHHCCCCEEEEEECHH
Confidence 2222 24899999999995
No 18
>PRK04841 transcriptional regulator MalT; Provisional
Probab=97.94 E-value=3.4e-05 Score=85.69 Aligned_cols=125 Identities=15% Similarity=0.147 Sum_probs=71.8
Q ss_pred CCCcccchhhHHHHHHHHhcCCCCcEEEEEEecCCCchHHHHHHhhcCccccccccchHHH------------HHHHHHH
Q 040913 166 RLDISEFERAREEWFDLLIEGPIGLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWI------------LDDIIRS 233 (425)
Q Consensus 166 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLa~~v~~~~~~~~~F~~~~wv------------~~~il~~ 233 (425)
.+.++-|+. |.+.|... ...+++.|.|++|.||||++...... ++.++|+ ...++..
T Consensus 13 ~~~~~~R~r----l~~~l~~~-~~~~~~~v~apaG~GKTtl~~~~~~~------~~~~~w~~l~~~d~~~~~f~~~l~~~ 81 (903)
T PRK04841 13 LHNTVVRER----LLAKLSGA-NNYRLVLVTSPAGYGKTTLISQWAAG------KNNLGWYSLDESDNQPERFASYLIAA 81 (903)
T ss_pred ccccCcchH----HHHHHhcc-cCCCeEEEECCCCCCHHHHHHHHHHh------CCCeEEEecCcccCCHHHHHHHHHHH
Confidence 345555554 44444432 35789999999999999999987752 2235565 3444444
Q ss_pred hCCCCCC--C-------ccCCCCHHHHHHHHHHHhc--CCeEEEEecccCC-C-hhhHHHHHhhCCCCCCCcEEEEecCC
Q 040913 234 LMPPSRV--T-------VIIGEDYKLKKSILRDFLT--NKKYFIALDDVCH-N-IEIWDDLEEVLPDNQNGSRVLITVIN 300 (425)
Q Consensus 234 l~~~~~~--~-------~~~~~~~~~l~~~l~~~l~--~kr~LlVLDdvw~-~-~~~~~~l~~~l~~~~~gskIivTTR~ 300 (425)
+...... + .....+...+...+...+. +.+++|||||+.. + ....+.+...++....+.++|||||.
T Consensus 82 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~ 161 (903)
T PRK04841 82 LQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRN 161 (903)
T ss_pred HHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCC
Confidence 4321110 0 0111233334444444443 6889999999952 2 22233444444455557789899998
Q ss_pred h
Q 040913 301 P 301 (425)
Q Consensus 301 ~ 301 (425)
.
T Consensus 162 ~ 162 (903)
T PRK04841 162 L 162 (903)
T ss_pred C
Confidence 4
No 19
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=97.91 E-value=9.5e-06 Score=79.43 Aligned_cols=93 Identities=14% Similarity=0.014 Sum_probs=56.6
Q ss_pred HHHHHHhcCCCCcEEEEEEecCCCchHHHHHHhhcCccccccccchHHH---------HHHHHHHhCCCCCCCccCCCCH
Q 040913 178 EWFDLLIEGPIGLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWI---------LDDIIRSLMPPSRVTVIIGEDY 248 (425)
Q Consensus 178 ~l~~~L~~~~~~~~vi~IvG~gGvGKTtLa~~v~~~~~~~~~F~~~~wv---------~~~il~~l~~~~~~~~~~~~~~ 248 (425)
++++++..=.. -.-..|+|++|+||||||+.+|++.... ||++++|| ..++.+++....-....+....
T Consensus 158 rvID~l~PIGk-GQR~lIvgppGvGKTTLaK~Ian~I~~n-hFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d~~~~ 235 (416)
T PRK09376 158 RIIDLIAPIGK-GQRGLIVAPPKAGKTVLLQNIANSITTN-HPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDEPAE 235 (416)
T ss_pred eeeeeeccccc-CceEEEeCCCCCChhHHHHHHHHHHHhh-cCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCCCCHH
Confidence 45555544221 2346899999999999999999965544 89999998 6677777753111001111111
Q ss_pred HH-----HHHHHHHH--hcCCeEEEEecccC
Q 040913 249 KL-----KKSILRDF--LTNKKYFIALDDVC 272 (425)
Q Consensus 249 ~~-----l~~~l~~~--l~~kr~LlVLDdvw 272 (425)
.. ..-...+. -.|++.+|++|++-
T Consensus 236 ~~~~~a~~~ie~Ae~~~e~G~dVlL~iDsIt 266 (416)
T PRK09376 236 RHVQVAEMVIEKAKRLVEHGKDVVILLDSIT 266 (416)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCEEEEEEChH
Confidence 11 11111122 25799999999994
No 20
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=97.88 E-value=8.6e-05 Score=72.12 Aligned_cols=122 Identities=12% Similarity=0.134 Sum_probs=78.7
Q ss_pred CCcccchhhHHHHHHHHhcCCCCcEEEEEEecCCCchHHHHHHhhcCc----cccccccchHHHHHHHHHHhCCCCCCCc
Q 040913 167 LDISEFERAREEWFDLLIEGPIGLSVVAILDSSGFDKTAFAADTYNNN----HVKFYFDCLAWILDDIIRSLMPPSRVTV 242 (425)
Q Consensus 167 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLa~~v~~~~----~~~~~F~~~~wv~~~il~~l~~~~~~~~ 242 (425)
.+++|.+..++.+.+++..+. -.+...++|+.|+||||+|+.+++.- ....|.|...|. . ..
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~~-~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~---------~-~~--- 69 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKNR-FSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFK---------P-IN--- 69 (313)
T ss_pred hhccCcHHHHHHHHHHHHcCC-CCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEec---------c-cc---
Confidence 467898999999999987654 35677899999999999998887621 123454543331 0 00
Q ss_pred cCCCCHHHHHHHHHH----HhcCCeEEEEecccCC-ChhhHHHHHhhCCCCCCCcEEEEecCChh
Q 040913 243 IIGEDYKLKKSILRD----FLTNKKYFIALDDVCH-NIEIWDDLEEVLPDNQNGSRVLITVINPS 302 (425)
Q Consensus 243 ~~~~~~~~l~~~l~~----~l~~kr~LlVLDdvw~-~~~~~~~l~~~l~~~~~gskIivTTR~~~ 302 (425)
......+++.+.+.. -..+++-++|+|++.. +.+.++.+...+.....++.+|++|.+.+
T Consensus 70 ~~~i~v~~ir~~~~~~~~~p~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~ 134 (313)
T PRK05564 70 KKSIGVDDIRNIIEEVNKKPYEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLE 134 (313)
T ss_pred CCCCCHHHHHHHHHHHhcCcccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChH
Confidence 011233443333321 1234555666666532 67889999999988778899888886654
No 21
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=97.79 E-value=8.6e-05 Score=79.40 Aligned_cols=109 Identities=18% Similarity=0.215 Sum_probs=62.6
Q ss_pred CCcccchhhHH---HHHHHHhcCCCCcEEEEEEecCCCchHHHHHHhhcCccccccccchHHHHHHHHHHhCCCCCCCcc
Q 040913 167 LDISEFERARE---EWFDLLIEGPIGLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWILDDIIRSLMPPSRVTVI 243 (425)
Q Consensus 167 ~~~vGr~~~~~---~l~~~L~~~~~~~~vi~IvG~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~~il~~l~~~~~~~~~ 243 (425)
.+++|.+.... .+.+.+..+. ...+.++|++|+||||||+.+++ ....+|.. +.... .
T Consensus 28 dd~vGQe~ii~~~~~L~~~i~~~~--~~slLL~GPpGtGKTTLA~aIA~--~~~~~f~~----lna~~----~------- 88 (725)
T PRK13341 28 EEFVGQDHILGEGRLLRRAIKADR--VGSLILYGPPGVGKTTLARIIAN--HTRAHFSS----LNAVL----A------- 88 (725)
T ss_pred HHhcCcHHHhhhhHHHHHHHhcCC--CceEEEECCCCCCHHHHHHHHHH--HhcCccee----ehhhh----h-------
Confidence 45889887764 4555555443 55677999999999999999998 44444421 00000 0
Q ss_pred CCCCHHHHHHHHHHHh--cCCeEEEEecccCC-ChhhHHHHHhhCCCCCCCcEEEEe
Q 040913 244 IGEDYKLKKSILRDFL--TNKKYFIALDDVCH-NIEIWDDLEEVLPDNQNGSRVLIT 297 (425)
Q Consensus 244 ~~~~~~~l~~~l~~~l--~~kr~LlVLDdvw~-~~~~~~~l~~~l~~~~~gskIivT 297 (425)
...+...........+ .+++.+|+|||++. +...++.+...+. .|+.++++
T Consensus 89 ~i~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~lE---~g~IiLI~ 142 (725)
T PRK13341 89 GVKDLRAEVDRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWVE---NGTITLIG 142 (725)
T ss_pred hhHHHHHHHHHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHhc---CceEEEEE
Confidence 0011122222232222 24678999999962 4455666655443 35555553
No 22
>PRK06893 DNA replication initiation factor; Validated
Probab=97.78 E-value=4.4e-05 Score=70.69 Aligned_cols=24 Identities=13% Similarity=0.079 Sum_probs=21.3
Q ss_pred cEEEEEEecCCCchHHHHHHhhcC
Q 040913 190 LSVVAILDSSGFDKTAFAADTYNN 213 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~~ 213 (425)
.+.+-++|++|+|||+|++.+.+.
T Consensus 39 ~~~l~l~G~~G~GKThL~~ai~~~ 62 (229)
T PRK06893 39 QPFFYIWGGKSSGKSHLLKAVSNH 62 (229)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 456889999999999999999983
No 23
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=97.77 E-value=0.0001 Score=73.22 Aligned_cols=57 Identities=18% Similarity=0.071 Sum_probs=43.1
Q ss_pred CCCCCCCcccchhhHHHHHHHHhcC--C---------CCcEEEEEEecCCCchHHHHHHhhcCccccccc
Q 040913 162 EGQPRLDISEFERAREEWFDLLIEG--P---------IGLSVVAILDSSGFDKTAFAADTYNNNHVKFYF 220 (425)
Q Consensus 162 ~~~~~~~~vGr~~~~~~l~~~L~~~--~---------~~~~vi~IvG~gGvGKTtLa~~v~~~~~~~~~F 220 (425)
+.....++.|++..+++|.+.+... . ...+-+.++|++|+|||+||+.+++ ....+|
T Consensus 117 p~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~--~l~~~~ 184 (364)
T TIGR01242 117 PNVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAH--ETNATF 184 (364)
T ss_pred CCCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHH--hCCCCE
Confidence 4445567899999999998877532 1 2345688999999999999999998 454454
No 24
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=97.76 E-value=0.00012 Score=77.48 Aligned_cols=133 Identities=15% Similarity=0.094 Sum_probs=81.0
Q ss_pred CCcccchhhHHHHHHHHhcCCCCcEEEEEEecCCCchHHHHHHhhcCcccccccc---chHHH----------HHHHH--
Q 040913 167 LDISEFERAREEWFDLLIEGPIGLSVVAILDSSGFDKTAFAADTYNNNHVKFYFD---CLAWI----------LDDII-- 231 (425)
Q Consensus 167 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLa~~v~~~~~~~~~F~---~~~wv----------~~~il-- 231 (425)
++++|.+..+..+.+.+.... ...+.|+|++|+||||||+.+++.......+. ...|+ ...+.
T Consensus 154 ~~iiGqs~~~~~l~~~ia~~~--~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~~i~~~ 231 (615)
T TIGR02903 154 SEIVGQERAIKALLAKVASPF--PQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPREVTNP 231 (615)
T ss_pred HhceeCcHHHHHHHHHHhcCC--CCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCHHHHhHH
Confidence 468999999999888875443 45689999999999999999987432211110 01111 11111
Q ss_pred -----------------HHhCCC---------CCCC-----ccCCCCHHHHHHHHHHHhcCCeEEEEecccCC-ChhhHH
Q 040913 232 -----------------RSLMPP---------SRVT-----VIIGEDYKLKKSILRDFLTNKKYFIALDDVCH-NIEIWD 279 (425)
Q Consensus 232 -----------------~~l~~~---------~~~~-----~~~~~~~~~l~~~l~~~l~~kr~LlVLDdvw~-~~~~~~ 279 (425)
...+.. .... +....+ ...+..+...+++++++++.|+.|. +...|+
T Consensus 232 llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld-~~~Q~~Ll~~Le~~~v~~~~~~~~~~~~~~~~ 310 (615)
T TIGR02903 232 LLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELD-PLLQNKLLKVLEDKRVEFSSSYYDPDDPNVPK 310 (615)
T ss_pred hcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCC-HHHHHHHHHHHhhCeEEeecceeccCCcccch
Confidence 111100 0000 112222 3457788889999999999887772 235788
Q ss_pred HHHhhCCCCCCCcEEEE--ecCChh
Q 040913 280 DLEEVLPDNQNGSRVLI--TVINPS 302 (425)
Q Consensus 280 ~l~~~l~~~~~gskIiv--TTR~~~ 302 (425)
.++..+....+...|++ ||++..
T Consensus 311 ~ik~~~~~~~~~~~VLI~aTt~~~~ 335 (615)
T TIGR02903 311 YIKKLFEEGAPADFVLIGATTRDPE 335 (615)
T ss_pred hhhhhcccCccceEEEEEecccccc
Confidence 88877776665555555 566543
No 25
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=97.71 E-value=0.0013 Score=69.69 Aligned_cols=124 Identities=19% Similarity=0.205 Sum_probs=75.3
Q ss_pred HHHHHHHHhcCCCCcEEEEEEecCCCchHHHHHHhhcCccccccccchHHH------------HHHHHHHhCCCCCCC--
Q 040913 176 REEWFDLLIEGPIGLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWI------------LDDIIRSLMPPSRVT-- 241 (425)
Q Consensus 176 ~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLa~~v~~~~~~~~~F~~~~wv------------~~~il~~l~~~~~~~-- 241 (425)
+.++++.|.... ..+.+.|..++|.|||||+-+... +... =..++|. ...++..|....+..
T Consensus 24 R~rL~~~L~~~~-~~RL~li~APAGfGKttl~aq~~~--~~~~-~~~v~Wlslde~dndp~rF~~yLi~al~~~~p~~~~ 99 (894)
T COG2909 24 RPRLLDRLRRAN-DYRLILISAPAGFGKTTLLAQWRE--LAAD-GAAVAWLSLDESDNDPARFLSYLIAALQQATPTLGD 99 (894)
T ss_pred cHHHHHHHhcCC-CceEEEEeCCCCCcHHHHHHHHHH--hcCc-ccceeEeecCCccCCHHHHHHHHHHHHHHhCccccH
Confidence 456666666552 489999999999999999988753 1111 1124455 444555444322210
Q ss_pred -------ccCCCCHHHHHHHHHHHhc--CCeEEEEecccCC--ChhhHHHHHhhCCCCCCCcEEEEecCChhH
Q 040913 242 -------VIIGEDYKLKKSILRDFLT--NKKYFIALDDVCH--NIEIWDDLEEVLPDNQNGSRVLITVINPSL 303 (425)
Q Consensus 242 -------~~~~~~~~~l~~~l~~~l~--~kr~LlVLDdvw~--~~~~~~~l~~~l~~~~~gskIivTTR~~~v 303 (425)
.....+...+...+..-+. .++..+||||.-- +..--..+...+.....+-..|||||+.--
T Consensus 100 ~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~rP~ 172 (894)
T COG2909 100 EAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRSRPQ 172 (894)
T ss_pred HHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEeccCCC
Confidence 1223344555555555554 3689999999731 333333445555556668899999999653
No 26
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=97.70 E-value=0.00016 Score=70.22 Aligned_cols=114 Identities=16% Similarity=0.098 Sum_probs=69.9
Q ss_pred CCCcccchhhHHHHHHHHhcCCCCcEEEEEEecCCCchHHHHHHhhcCccccccccchHHHHHHHHHHhCCCCCCCccCC
Q 040913 166 RLDISEFERAREEWFDLLIEGPIGLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWILDDIIRSLMPPSRVTVIIG 245 (425)
Q Consensus 166 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~~il~~l~~~~~~~~~~~ 245 (425)
-.+++|.+...+.+..++..+. ...++-++|++|+||||+|+.+++. ....|-. + ....
T Consensus 20 ~~~~~~~~~~~~~l~~~~~~~~-~~~~lll~G~~G~GKT~la~~l~~~--~~~~~~~-----------i-------~~~~ 78 (316)
T PHA02544 20 IDECILPAADKETFKSIVKKGR-IPNMLLHSPSPGTGKTTVAKALCNE--VGAEVLF-----------V-------NGSD 78 (316)
T ss_pred HHHhcCcHHHHHHHHHHHhcCC-CCeEEEeeCcCCCCHHHHHHHHHHH--hCccceE-----------e-------ccCc
Confidence 3568999999999999988643 4567778999999999999999883 2222210 0 0000
Q ss_pred CCHHHHHHHHHHHh-----cCCeEEEEecccCCCh---hhHHHHHhhCCCCCCCcEEEEecCCh
Q 040913 246 EDYKLKKSILRDFL-----TNKKYFIALDDVCHNI---EIWDDLEEVLPDNQNGSRVLITVINP 301 (425)
Q Consensus 246 ~~~~~l~~~l~~~l-----~~kr~LlVLDdvw~~~---~~~~~l~~~l~~~~~gskIivTTR~~ 301 (425)
.....+...+..+. .+.+-+||+||+. .. +..+.+...+.....++++|+||...
T Consensus 79 ~~~~~i~~~l~~~~~~~~~~~~~~vliiDe~d-~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~ 141 (316)
T PHA02544 79 CRIDFVRNRLTRFASTVSLTGGGKVIIIDEFD-RLGLADAQRHLRSFMEAYSKNCSFIITANNK 141 (316)
T ss_pred ccHHHHHHHHHHHHHhhcccCCCeEEEEECcc-cccCHHHHHHHHHHHHhcCCCceEEEEcCCh
Confidence 11222222232222 2345689999996 33 23344444454445577888888654
No 27
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=97.70 E-value=0.00013 Score=71.45 Aligned_cols=44 Identities=18% Similarity=0.059 Sum_probs=37.2
Q ss_pred CCcccchhhHHHHHHHHhcCCCCcEEEEEEecCCCchHHHHHHhhc
Q 040913 167 LDISEFERAREEWFDLLIEGPIGLSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 167 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
.+++|++..++.+.+++..+. .+.+.++|++|+||||+|+.+.+
T Consensus 15 ~~~~g~~~~~~~L~~~~~~~~--~~~lll~Gp~GtGKT~la~~~~~ 58 (337)
T PRK12402 15 EDILGQDEVVERLSRAVDSPN--LPHLLVQGPPGSGKTAAVRALAR 58 (337)
T ss_pred HHhcCCHHHHHHHHHHHhCCC--CceEEEECCCCCCHHHHHHHHHH
Confidence 568899999999999887654 44577999999999999998876
No 28
>PRK04195 replication factor C large subunit; Provisional
Probab=97.65 E-value=0.00018 Score=74.05 Aligned_cols=48 Identities=19% Similarity=0.179 Sum_probs=40.0
Q ss_pred CCCcccchhhHHHHHHHHhcCC--CCcEEEEEEecCCCchHHHHHHhhcC
Q 040913 166 RLDISEFERAREEWFDLLIEGP--IGLSVVAILDSSGFDKTAFAADTYNN 213 (425)
Q Consensus 166 ~~~~vGr~~~~~~l~~~L~~~~--~~~~vi~IvG~gGvGKTtLa~~v~~~ 213 (425)
-.+++|.+..++.+.+|+..-. ...+.+.|+|++|+||||+|+.+.+.
T Consensus 13 l~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~e 62 (482)
T PRK04195 13 LSDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALAND 62 (482)
T ss_pred HHHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 3468999999999999987532 23678899999999999999999884
No 29
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.64 E-value=0.00023 Score=73.27 Aligned_cols=132 Identities=12% Similarity=0.012 Sum_probs=73.3
Q ss_pred CCcccchhhHHHHHHHHhcCCCCcEEEEEEecCCCchHHHHHHhhcCccccccccchHHH---HHHHHHHhCCCCCC-Cc
Q 040913 167 LDISEFERAREEWFDLLIEGPIGLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWI---LDDIIRSLMPPSRV-TV 242 (425)
Q Consensus 167 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLa~~v~~~~~~~~~F~~~~wv---~~~il~~l~~~~~~-~~ 242 (425)
.+++|.+...+.|.+++..+. -...+.++|++|+||||+|+.+.+.-.....++..+|. -..+.......... ..
T Consensus 14 ~dvvGq~~v~~~L~~~i~~~~-l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~i~~~~h~dv~el~~ 92 (504)
T PRK14963 14 DEVVGQEHVKEVLLAALRQGR-LGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLAVRRGAHPDVLEIDA 92 (504)
T ss_pred HHhcChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHHHhcCCCCceEEecc
Confidence 468999998888888887754 34567899999999999999887743222222212222 01111000000000 00
Q ss_pred cCCCCHHHHHHHHHHHh-----cCCeEEEEecccCC-ChhhHHHHHhhCCCCCCCcEEEEecCC
Q 040913 243 IIGEDYKLKKSILRDFL-----TNKKYFIALDDVCH-NIEIWDDLEEVLPDNQNGSRVLITVIN 300 (425)
Q Consensus 243 ~~~~~~~~l~~~l~~~l-----~~kr~LlVLDdvw~-~~~~~~~l~~~l~~~~~gskIivTTR~ 300 (425)
......+.+. .+.+.+ .+++-++|+|+++. +...++.+...+......+.+|++|..
T Consensus 93 ~~~~~vd~iR-~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~ 155 (504)
T PRK14963 93 ASNNSVEDVR-DLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTE 155 (504)
T ss_pred cccCCHHHHH-HHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCC
Confidence 0111222222 233322 35677999999973 345677887777665555565555543
No 30
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=97.63 E-value=0.00015 Score=70.46 Aligned_cols=90 Identities=27% Similarity=0.379 Sum_probs=56.0
Q ss_pred cEEEEEEecCCCchHHHHHHhhcCccccccccchHHHHHHHHHHhCCCCCCCccCCCCHHHHHHHHHHH----hcCCeEE
Q 040913 190 LSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWILDDIIRSLMPPSRVTVIIGEDYKLKKSILRDF----LTNKKYF 265 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~----l~~kr~L 265 (425)
+...-.||++|+||||||+.+.. .....|... ........++...+.+. ..|++.+
T Consensus 48 l~SmIl~GPPG~GKTTlA~liA~--~~~~~f~~~------------------sAv~~gvkdlr~i~e~a~~~~~~gr~ti 107 (436)
T COG2256 48 LHSMILWGPPGTGKTTLARLIAG--TTNAAFEAL------------------SAVTSGVKDLREIIEEARKNRLLGRRTI 107 (436)
T ss_pred CceeEEECCCCCCHHHHHHHHHH--hhCCceEEe------------------ccccccHHHHHHHHHHHHHHHhcCCceE
Confidence 55556899999999999999998 555566420 11122334443333332 3589999
Q ss_pred EEecccC-CChhhHHHHHhhCCCCCCCcEEEE--ecCChh
Q 040913 266 IALDDVC-HNIEIWDDLEEVLPDNQNGSRVLI--TVINPS 302 (425)
Q Consensus 266 lVLDdvw-~~~~~~~~l~~~l~~~~~gskIiv--TTR~~~ 302 (425)
|++|.|- ++..+-+. .||.-.+|.-|+| ||-|..
T Consensus 108 LflDEIHRfnK~QQD~---lLp~vE~G~iilIGATTENPs 144 (436)
T COG2256 108 LFLDEIHRFNKAQQDA---LLPHVENGTIILIGATTENPS 144 (436)
T ss_pred EEEehhhhcChhhhhh---hhhhhcCCeEEEEeccCCCCC
Confidence 9999994 13343333 3455566877776 455543
No 31
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=97.62 E-value=0.00035 Score=73.84 Aligned_cols=132 Identities=11% Similarity=0.089 Sum_probs=75.2
Q ss_pred CCcccchhhHHHHHHHHhcCCCCcEEEEEEecCCCchHHHHHHhhcCccccccc---cchHHHHHHHHHHhCCCCCCC--
Q 040913 167 LDISEFERAREEWFDLLIEGPIGLSVVAILDSSGFDKTAFAADTYNNNHVKFYF---DCLAWILDDIIRSLMPPSRVT-- 241 (425)
Q Consensus 167 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLa~~v~~~~~~~~~F---~~~~wv~~~il~~l~~~~~~~-- 241 (425)
.+++|.+..++.|.+++..+. -.+.+.++|..|+||||+|+.+.+.-.....+ .|... ...+.+.......
T Consensus 16 dEVIGQe~Vv~~L~~aL~~gR-L~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C---~sCr~I~~G~h~Dvi 91 (830)
T PRK07003 16 ASLVGQEHVVRALTHALDGGR-LHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVC---RACREIDEGRFVDYV 91 (830)
T ss_pred HHHcCcHHHHHHHHHHHhcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCccc---HHHHHHhcCCCceEE
Confidence 568999999999999988664 24455699999999999998776632111111 11100 0111111100000
Q ss_pred cc---CCCCHHHHHHHHHHH----hcCCeEEEEecccCC-ChhhHHHHHhhCCCCCCCcEEEEecCChh
Q 040913 242 VI---IGEDYKLKKSILRDF----LTNKKYFIALDDVCH-NIEIWDDLEEVLPDNQNGSRVLITVINPS 302 (425)
Q Consensus 242 ~~---~~~~~~~l~~~l~~~----l~~kr~LlVLDdvw~-~~~~~~~l~~~l~~~~~gskIivTTR~~~ 302 (425)
.. .....+++.+.+... ..++.-++|||++.. +...++.+...+..-....++|+||++.+
T Consensus 92 EIDAas~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~~ 160 (830)
T PRK07003 92 EMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQ 160 (830)
T ss_pred EecccccccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECChh
Confidence 01 112233333333322 134566899999963 34678888777766555778777776643
No 32
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.62 E-value=5.3e-05 Score=74.57 Aligned_cols=82 Identities=12% Similarity=-0.011 Sum_probs=51.2
Q ss_pred cEEEEEEecCCCchHHHHHHhhcCccccccccchHHH---------HHHHHHHhCCCCCCC--ccCCCCHHHH----HHH
Q 040913 190 LSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWI---------LDDIIRSLMPPSRVT--VIIGEDYKLK----KSI 254 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~~~~~~~~F~~~~wv---------~~~il~~l~~~~~~~--~~~~~~~~~l----~~~ 254 (425)
-..++|+|++|+|||||++.+++..... ||+..+|+ ..++++++....-.. +.....-..+ .+.
T Consensus 168 Gq~~~IvG~~g~GKTtL~~~i~~~I~~n-hfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~e~ 246 (415)
T TIGR00767 168 GQRGLIVAPPKAGKTVLLQKIAQAITRN-HPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVIEK 246 (415)
T ss_pred CCEEEEECCCCCChhHHHHHHHHhhccc-CCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHHHH
Confidence 4568999999999999999999954333 79888888 667777763211100 0011110111 111
Q ss_pred HHHH-hcCCeEEEEecccC
Q 040913 255 LRDF-LTNKKYFIALDDVC 272 (425)
Q Consensus 255 l~~~-l~~kr~LlVLDdvw 272 (425)
.... -.|++.+|++|.+.
T Consensus 247 Ae~~~~~GkdVVLlIDEit 265 (415)
T TIGR00767 247 AKRLVEHKKDVVILLDSIT 265 (415)
T ss_pred HHHHHHcCCCeEEEEEChh
Confidence 1122 25899999999985
No 33
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=97.61 E-value=8.8e-05 Score=68.26 Aligned_cols=40 Identities=13% Similarity=0.047 Sum_probs=30.2
Q ss_pred chhhHHHHHHHHhcCCCCcEEEEEEecCCCchHHHHHHhhcC
Q 040913 172 FERAREEWFDLLIEGPIGLSVVAILDSSGFDKTAFAADTYNN 213 (425)
Q Consensus 172 r~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLa~~v~~~ 213 (425)
.+...+.+.+++... ....+.++|++|+|||+||+.+++.
T Consensus 22 ~~~~~~~l~~~~~~~--~~~~lll~G~~G~GKT~la~~~~~~ 61 (226)
T TIGR03420 22 NAELLAALRQLAAGK--GDRFLYLWGESGSGKSHLLQAACAA 61 (226)
T ss_pred cHHHHHHHHHHHhcC--CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 344566666665432 3567889999999999999999873
No 34
>PRK08727 hypothetical protein; Validated
Probab=97.60 E-value=0.00011 Score=68.27 Aligned_cols=41 Identities=12% Similarity=0.020 Sum_probs=27.2
Q ss_pred ccchhhHHHHHHHHhcCCCCcEEEEEEecCCCchHHHHHHhhc
Q 040913 170 SEFERAREEWFDLLIEGPIGLSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 170 vGr~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
+|-.+....+....... ....+.|+|..|+|||+|++.+++
T Consensus 23 ~~~~n~~~~~~~~~~~~--~~~~l~l~G~~G~GKThL~~a~~~ 63 (233)
T PRK08727 23 AAPDGLLAQLQALAAGQ--SSDWLYLSGPAGTGKTHLALALCA 63 (233)
T ss_pred CCcHHHHHHHHHHHhcc--CCCeEEEECCCCCCHHHHHHHHHH
Confidence 34434444443333222 234589999999999999999887
No 35
>PRK08116 hypothetical protein; Validated
Probab=97.57 E-value=9e-05 Score=70.19 Aligned_cols=102 Identities=17% Similarity=0.170 Sum_probs=53.4
Q ss_pred EEEEEEecCCCchHHHHHHhhcCccccccccchHHH-HHHHHHHhCCCCCCCccCCCCHHHHHHHHHHHhcCCeEEEEec
Q 040913 191 SVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWI-LDDIIRSLMPPSRVTVIIGEDYKLKKSILRDFLTNKKYFIALD 269 (425)
Q Consensus 191 ~vi~IvG~gGvGKTtLa~~v~~~~~~~~~F~~~~wv-~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~kr~LlVLD 269 (425)
..+.++|..|+|||.||..+++. +...-..++++ ..+++..+...... ....+... +.+.+.+-. |||||
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~--l~~~~~~v~~~~~~~ll~~i~~~~~~--~~~~~~~~----~~~~l~~~d-lLviD 185 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANE--LIEKGVPVIFVNFPQLLNRIKSTYKS--SGKEDENE----IIRSLVNAD-LLILD 185 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEEHHHHHHHHHHHHhc--cccccHHH----HHHHhcCCC-EEEEe
Confidence 34779999999999999999993 32221122333 44444444322110 00112222 233344333 89999
Q ss_pred ccCC-ChhhHHH--HHhhCCC-CCCCcEEEEecCCh
Q 040913 270 DVCH-NIEIWDD--LEEVLPD-NQNGSRVLITVINP 301 (425)
Q Consensus 270 dvw~-~~~~~~~--l~~~l~~-~~~gskIivTTR~~ 301 (425)
|+.. ....|.. +...+.. -..|..+|+||...
T Consensus 186 Dlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~~ 221 (268)
T PRK08116 186 DLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNLS 221 (268)
T ss_pred cccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 9941 2334432 3333321 13456788888653
No 36
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.55 E-value=0.00051 Score=71.74 Aligned_cols=134 Identities=10% Similarity=0.052 Sum_probs=74.6
Q ss_pred CCCcccchhhHHHHHHHHhcCCCCcEEEEEEecCCCchHHHHHHhhcCccccccccchHHHHHHHHHHhCCCCCCC--cc
Q 040913 166 RLDISEFERAREEWFDLLIEGPIGLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWILDDIIRSLMPPSRVT--VI 243 (425)
Q Consensus 166 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~~il~~l~~~~~~~--~~ 243 (425)
-.+++|.+.....|.+++..+. -.+.+.++|+.|+||||+|+.+.+.-..........--.....+.+....... ..
T Consensus 14 FddVIGQe~vv~~L~~aI~~gr-l~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I~~g~hpDviEI 92 (702)
T PRK14960 14 FNELVGQNHVSRALSSALERGR-LHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAVNEGRFIDLIEI 92 (702)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHHhcCCCCceEEe
Confidence 3568999999999999998764 34677899999999999999886621111000000000000001111100000 00
Q ss_pred ---CCCCHHHHHHHHHHH----hcCCeEEEEecccCC-ChhhHHHHHhhCCCCCCCcEEEEecCC
Q 040913 244 ---IGEDYKLKKSILRDF----LTNKKYFIALDDVCH-NIEIWDDLEEVLPDNQNGSRVLITVIN 300 (425)
Q Consensus 244 ---~~~~~~~l~~~l~~~----l~~kr~LlVLDdvw~-~~~~~~~l~~~l~~~~~gskIivTTR~ 300 (425)
.....+++.+.+... ..++.-++|+|++.. +....+.+...+.....+.++|++|.+
T Consensus 93 DAAs~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd 157 (702)
T PRK14960 93 DAASRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTD 157 (702)
T ss_pred cccccCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECC
Confidence 112233333222211 236777999999962 346777777777665556777777655
No 37
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=97.54 E-value=0.00046 Score=66.92 Aligned_cols=118 Identities=13% Similarity=0.093 Sum_probs=67.8
Q ss_pred CCcccchhhHHHHHHHHhcCCCCcEEEEEEecCCCchHHHHHHhhcCccccccccchHHHHHHHHHHhCCCCCCCccCCC
Q 040913 167 LDISEFERAREEWFDLLIEGPIGLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWILDDIIRSLMPPSRVTVIIGE 246 (425)
Q Consensus 167 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~~il~~l~~~~~~~~~~~~ 246 (425)
.+++|++..++.+..++..+. .+.+.++|.+|+||||+|+.+.+.-. ...+.. .++ .+.. ....
T Consensus 17 ~~~~g~~~~~~~l~~~i~~~~--~~~~ll~G~~G~GKt~~~~~l~~~l~-~~~~~~-~~i------~~~~------~~~~ 80 (319)
T PRK00440 17 DEIVGQEEIVERLKSYVKEKN--MPHLLFAGPPGTGKTTAALALARELY-GEDWRE-NFL------ELNA------SDER 80 (319)
T ss_pred HHhcCcHHHHHHHHHHHhCCC--CCeEEEECCCCCCHHHHHHHHHHHHc-CCcccc-ceE------Eecc------cccc
Confidence 458899999999999987654 44578999999999999999887311 111110 000 0000 0011
Q ss_pred CHHHHHHHHHHHh-----c-CCeEEEEecccCC-ChhhHHHHHhhCCCCCCCcEEEEecCC
Q 040913 247 DYKLKKSILRDFL-----T-NKKYFIALDDVCH-NIEIWDDLEEVLPDNQNGSRVLITVIN 300 (425)
Q Consensus 247 ~~~~l~~~l~~~l-----~-~kr~LlVLDdvw~-~~~~~~~l~~~l~~~~~gskIivTTR~ 300 (425)
........+.... . ..+-+|++|++.. .......+...+......+++|+++..
T Consensus 81 ~~~~~~~~i~~~~~~~~~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~ 141 (319)
T PRK00440 81 GIDVIRNKIKEFARTAPVGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNY 141 (319)
T ss_pred chHHHHHHHHHHHhcCCCCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCC
Confidence 1122222222222 1 2456899999862 234556666666554555677776643
No 38
>PLN03025 replication factor C subunit; Provisional
Probab=97.53 E-value=0.00078 Score=65.62 Aligned_cols=118 Identities=13% Similarity=0.091 Sum_probs=65.8
Q ss_pred CCcccchhhHHHHHHHHhcCCCCcEEEEEEecCCCchHHHHHHhhcCccccccccchHHHHHHHHHHhCCCCCCCccCCC
Q 040913 167 LDISEFERAREEWFDLLIEGPIGLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWILDDIIRSLMPPSRVTVIIGE 246 (425)
Q Consensus 167 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~~il~~l~~~~~~~~~~~~ 246 (425)
.+++|.++..+.|.+++..+. .+-+-++|++|+||||+|+.+.+.-. ...|...+. .+ + ..+..
T Consensus 13 ~~~~g~~~~~~~L~~~~~~~~--~~~lll~Gp~G~GKTtla~~la~~l~-~~~~~~~~~-------el----n--~sd~~ 76 (319)
T PLN03025 13 DDIVGNEDAVSRLQVIARDGN--MPNLILSGPPGTGKTTSILALAHELL-GPNYKEAVL-------EL----N--ASDDR 76 (319)
T ss_pred HHhcCcHHHHHHHHHHHhcCC--CceEEEECCCCCCHHHHHHHHHHHHh-cccCcccee-------ee----c--ccccc
Confidence 457898888888887776544 34466899999999999999877210 111110000 00 0 00111
Q ss_pred CHHHHHHHHHHHh-------cCCeEEEEecccCC-ChhhHHHHHhhCCCCCCCcEEEEecCC
Q 040913 247 DYKLKKSILRDFL-------TNKKYFIALDDVCH-NIEIWDDLEEVLPDNQNGSRVLITVIN 300 (425)
Q Consensus 247 ~~~~l~~~l~~~l-------~~kr~LlVLDdvw~-~~~~~~~l~~~l~~~~~gskIivTTR~ 300 (425)
..+.+...+.... .++.-+++||++.. +....+.+...+..-...+++|++|..
T Consensus 77 ~~~~vr~~i~~~~~~~~~~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~ 138 (319)
T PLN03025 77 GIDVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNT 138 (319)
T ss_pred cHHHHHHHHHHHHhccccCCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCC
Confidence 2223333333221 24567999999962 234445555555443445777776654
No 39
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.53 E-value=0.00068 Score=67.26 Aligned_cols=133 Identities=13% Similarity=0.057 Sum_probs=73.7
Q ss_pred CCCcccchhhHHHHHHHHhcCCCCcEEEEEEecCCCchHHHHHHhhcCccccccc---cch-HHHHHHHHHHhCCCCCCC
Q 040913 166 RLDISEFERAREEWFDLLIEGPIGLSVVAILDSSGFDKTAFAADTYNNNHVKFYF---DCL-AWILDDIIRSLMPPSRVT 241 (425)
Q Consensus 166 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLa~~v~~~~~~~~~F---~~~-~wv~~~il~~l~~~~~~~ 241 (425)
-.+++|.+..++.+.+.+..+. -.+.+-++|+.|+||||+|+.+.+.-...... +|. +-.-.++...........
T Consensus 15 ~~~iiGq~~~~~~l~~~~~~~~-~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~~~~~~~~~d~~~~ 93 (363)
T PRK14961 15 FRDIIGQKHIVTAISNGLSLGR-IHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICKEIEKGLCLDLIEI 93 (363)
T ss_pred hhhccChHHHHHHHHHHHHcCC-CCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceEEe
Confidence 3568999999999998887654 34667899999999999999987632111111 110 000111111110000000
Q ss_pred cc-CCCCHHHHHHHHHHHh-----cCCeEEEEecccCC-ChhhHHHHHhhCCCCCCCcEEEEecCC
Q 040913 242 VI-IGEDYKLKKSILRDFL-----TNKKYFIALDDVCH-NIEIWDDLEEVLPDNQNGSRVLITVIN 300 (425)
Q Consensus 242 ~~-~~~~~~~l~~~l~~~l-----~~kr~LlVLDdvw~-~~~~~~~l~~~l~~~~~gskIivTTR~ 300 (425)
+. .....+++. .+.+.+ .+++-++|+|++.. +...++.+...+.......++|++|.+
T Consensus 94 ~~~~~~~v~~ir-~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~ 158 (363)
T PRK14961 94 DAASRTKVEEMR-EILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTD 158 (363)
T ss_pred cccccCCHHHHH-HHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCC
Confidence 00 012223322 222222 24566999999963 334677777777665556777776654
No 40
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=97.51 E-value=0.00021 Score=70.52 Aligned_cols=99 Identities=19% Similarity=0.131 Sum_probs=69.2
Q ss_pred CcccchhhHHHHHHHHhcC--CCCcEEEEEEecCCCchHHHHHHhhcCccccccc------cchHHH-------HHHHHH
Q 040913 168 DISEFERAREEWFDLLIEG--PIGLSVVAILDSSGFDKTAFAADTYNNNHVKFYF------DCLAWI-------LDDIIR 232 (425)
Q Consensus 168 ~~vGr~~~~~~l~~~L~~~--~~~~~vi~IvG~gGvGKTtLa~~v~~~~~~~~~F------~~~~wv-------~~~il~ 232 (425)
.+.+|+.+++++...|..- ...+.-+-|+|.+|+|||+.++.+.+ ++.+.. ..-+|. +..|++
T Consensus 18 ~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~--~l~~~~~~~~~~yINc~~~~t~~~i~~~i~~ 95 (366)
T COG1474 18 ELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVME--ELEESSANVEVVYINCLELRTPYQVLSKILN 95 (366)
T ss_pred cccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHH--HHHhhhccCceEEEeeeeCCCHHHHHHHHHH
Confidence 3899999999999887653 22233388999999999999999988 443331 112222 667777
Q ss_pred HhCCCCCCCccCCCCHHHHHHHHHHHhc--CCeEEEEecccC
Q 040913 233 SLMPPSRVTVIIGEDYKLKKSILRDFLT--NKKYFIALDDVC 272 (425)
Q Consensus 233 ~l~~~~~~~~~~~~~~~~l~~~l~~~l~--~kr~LlVLDdvw 272 (425)
++.... .......+....+.+.+. ++.++||||++.
T Consensus 96 ~~~~~p----~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid 133 (366)
T COG1474 96 KLGKVP----LTGDSSLEILKRLYDNLSKKGKTVIVILDEVD 133 (366)
T ss_pred HcCCCC----CCCCchHHHHHHHHHHHHhcCCeEEEEEcchh
Confidence 776221 223556677777777775 589999999996
No 41
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.50 E-value=0.00079 Score=61.91 Aligned_cols=107 Identities=18% Similarity=0.181 Sum_probs=66.9
Q ss_pred CCCCCCCcccchhhHHHHHHH---HhcCCCCcEEEEEEecCCCchHHHHHHhhcCccccccccchHHHHHHHHHHhCCCC
Q 040913 162 EGQPRLDISEFERAREEWFDL---LIEGPIGLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWILDDIIRSLMPPS 238 (425)
Q Consensus 162 ~~~~~~~~vGr~~~~~~l~~~---L~~~~~~~~vi~IvG~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~~il~~l~~~~ 238 (425)
..+.-.+++|.+..++.|++= +..+. ...-+-++|..|.|||+|++.+.+...-+. ... +...
T Consensus 22 ~~~~l~~L~Gie~Qk~~l~~Nt~~Fl~G~-pannvLL~G~rGtGKSSlVkall~~y~~~G-LRl-----------Iev~- 87 (249)
T PF05673_consen 22 DPIRLDDLIGIERQKEALIENTEQFLQGL-PANNVLLWGARGTGKSSLVKALLNEYADQG-LRL-----------IEVS- 87 (249)
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHHcCC-CCcceEEecCCCCCHHHHHHHHHHHHhhcC-ceE-----------EEEC-
Confidence 345567899999999988653 33333 244456799999999999999988221111 000 0000
Q ss_pred CCCccCCCCHHHHHHHHHHHhcCCeEEEEecccCC--ChhhHHHHHhhCCC
Q 040913 239 RVTVIIGEDYKLKKSILRDFLTNKKYFIALDDVCH--NIEIWDDLEEVLPD 287 (425)
Q Consensus 239 ~~~~~~~~~~~~l~~~l~~~l~~kr~LlVLDdvw~--~~~~~~~l~~~l~~ 287 (425)
...-.+...+.+.++. +..||+|.+||+.+ ++..+..++..|..
T Consensus 88 ---k~~L~~l~~l~~~l~~--~~~kFIlf~DDLsFe~~d~~yk~LKs~LeG 133 (249)
T PF05673_consen 88 ---KEDLGDLPELLDLLRD--RPYKFILFCDDLSFEEGDTEYKALKSVLEG 133 (249)
T ss_pred ---HHHhccHHHHHHHHhc--CCCCEEEEecCCCCCCCcHHHHHHHHHhcC
Confidence 0112334444444442 35799999999976 34678888888863
No 42
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.48 E-value=0.00034 Score=58.14 Aligned_cols=21 Identities=19% Similarity=0.221 Sum_probs=19.2
Q ss_pred EEEEecCCCchHHHHHHhhcC
Q 040913 193 VAILDSSGFDKTAFAADTYNN 213 (425)
Q Consensus 193 i~IvG~gGvGKTtLa~~v~~~ 213 (425)
|.|+|++|+||||+|+.+.+.
T Consensus 1 ill~G~~G~GKT~l~~~la~~ 21 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQY 21 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHhh
Confidence 568999999999999999994
No 43
>PRK09087 hypothetical protein; Validated
Probab=97.47 E-value=0.00054 Score=63.19 Aligned_cols=24 Identities=25% Similarity=0.185 Sum_probs=21.2
Q ss_pred cEEEEEEecCCCchHHHHHHhhcC
Q 040913 190 LSVVAILDSSGFDKTAFAADTYNN 213 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~~ 213 (425)
.+.+.|+|..|+|||+|++.+++.
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~ 67 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREK 67 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHh
Confidence 456899999999999999998874
No 44
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.47 E-value=0.00075 Score=67.75 Aligned_cols=134 Identities=13% Similarity=0.037 Sum_probs=73.8
Q ss_pred CCCcccchhhHHHHHHHHhcCCCCcEEEEEEecCCCchHHHHHHhhcCccccc--------------cccchHHHHHHHH
Q 040913 166 RLDISEFERAREEWFDLLIEGPIGLSVVAILDSSGFDKTAFAADTYNNNHVKF--------------YFDCLAWILDDII 231 (425)
Q Consensus 166 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLa~~v~~~~~~~~--------------~F~~~~wv~~~il 231 (425)
-.+++|.+..++.|.+++..+. -...+-++|+.|+||||+|..+.+.-.... +-.|.... .+.
T Consensus 15 ~~eiiGq~~~~~~L~~~~~~~~-~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~~c~--~~~ 91 (397)
T PRK14955 15 FADITAQEHITRTIQNSLRMGR-VGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECESCR--DFD 91 (397)
T ss_pred HhhccChHHHHHHHHHHHHhCC-cceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCHHHH--HHh
Confidence 3468899999998888887654 345577899999999999988765211111 00111110 000
Q ss_pred HHhCCCCCC-CccCCCCHHHHHHHHHHHh-----cCCeEEEEecccCC-ChhhHHHHHhhCCCCCCCcEEEEec-CChhH
Q 040913 232 RSLMPPSRV-TVIIGEDYKLKKSILRDFL-----TNKKYFIALDDVCH-NIEIWDDLEEVLPDNQNGSRVLITV-INPSL 303 (425)
Q Consensus 232 ~~l~~~~~~-~~~~~~~~~~l~~~l~~~l-----~~kr~LlVLDdvw~-~~~~~~~l~~~l~~~~~gskIivTT-R~~~v 303 (425)
.....+... ........+++.+ +.+.+ .+++-++|+|++.. +...++.+...+....+.+.+|++| +...+
T Consensus 92 ~~~~~n~~~~~~~~~~~id~Ir~-l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~~kl 170 (397)
T PRK14955 92 AGTSLNISEFDAASNNSVDDIRL-LRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELHKI 170 (397)
T ss_pred cCCCCCeEeecccccCCHHHHHH-HHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCChHHh
Confidence 000000000 0001122344433 23333 35667899999862 3467888888877655567765554 43333
No 45
>PRK10536 hypothetical protein; Provisional
Probab=97.46 E-value=7.8e-05 Score=69.21 Aligned_cols=42 Identities=14% Similarity=0.145 Sum_probs=34.1
Q ss_pred CCcccchhhHHHHHHHHhcCCCCcEEEEEEecCCCchHHHHHHhhc
Q 040913 167 LDISEFERAREEWFDLLIEGPIGLSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 167 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
..+.++......++.+|.+. .++.+.|++|+|||+||..+..
T Consensus 55 ~~i~p~n~~Q~~~l~al~~~----~lV~i~G~aGTGKT~La~a~a~ 96 (262)
T PRK10536 55 SPILARNEAQAHYLKAIESK----QLIFATGEAGCGKTWISAAKAA 96 (262)
T ss_pred ccccCCCHHHHHHHHHHhcC----CeEEEECCCCCCHHHHHHHHHH
Confidence 44667888888888888763 3888999999999999987655
No 46
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=97.46 E-value=0.00051 Score=73.30 Aligned_cols=104 Identities=13% Similarity=0.023 Sum_probs=64.2
Q ss_pred CCCcccchhhHHHHHHHHhcC---CCCcEEEEEEecCCCchHHHHHHhhcCcc--c-cc---cc-----cch----HHH-
Q 040913 166 RLDISEFERAREEWFDLLIEG---PIGLSVVAILDSSGFDKTAFAADTYNNNH--V-KF---YF-----DCL----AWI- 226 (425)
Q Consensus 166 ~~~~vGr~~~~~~l~~~L~~~---~~~~~vi~IvG~gGvGKTtLa~~v~~~~~--~-~~---~F-----~~~----~wv- 226 (425)
+..+.||++++++|...|... .....++-|.|++|.|||+.++.|.+.-. . +. .| .|. .+.
T Consensus 754 PD~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sI 833 (1164)
T PTZ00112 754 PKYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAA 833 (1164)
T ss_pred CCcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHH
Confidence 467889999999998888652 23346778999999999999999976311 0 00 11 110 111
Q ss_pred HHHHHHHhCCCCCCCccCCCCHHHHHHHHHHHhc---CCeEEEEecccC
Q 040913 227 LDDIIRSLMPPSRVTVIIGEDYKLKKSILRDFLT---NKKYFIALDDVC 272 (425)
Q Consensus 227 ~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~l~---~kr~LlVLDdvw 272 (425)
+..|..++..... ............+...+. +...+||||++.
T Consensus 834 YqvI~qqL~g~~P---~~GlsS~evLerLF~~L~k~~r~v~IIILDEID 879 (1164)
T PTZ00112 834 YQVLYKQLFNKKP---PNALNSFKILDRLFNQNKKDNRNVSILIIDEID 879 (1164)
T ss_pred HHHHHHHHcCCCC---CccccHHHHHHHHHhhhhcccccceEEEeehHh
Confidence 5566667743322 122333445555555542 234599999996
No 47
>PRK08118 topology modulation protein; Reviewed
Probab=97.45 E-value=0.00027 Score=62.01 Aligned_cols=65 Identities=15% Similarity=0.279 Sum_probs=43.1
Q ss_pred EEEEEecCCCchHHHHHHhhcCcccc-ccccchHHHHHHHHHHhCCCCCCCccCCCCHHHHHHHHHHHhcCCeEEEEecc
Q 040913 192 VVAILDSSGFDKTAFAADTYNNNHVK-FYFDCLAWILDDIIRSLMPPSRVTVIIGEDYKLKKSILRDFLTNKKYFIALDD 270 (425)
Q Consensus 192 vi~IvG~gGvGKTtLa~~v~~~~~~~-~~F~~~~wv~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~kr~LlVLDd 270 (425)
-|.|+|++|+||||||+.+++...+. -+||..+|- + +....+.++....+.+.+++.. .|+|.
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~~----------~----~w~~~~~~~~~~~~~~~~~~~~--wVidG 66 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFWK----------P----NWEGVPKEEQITVQNELVKEDE--WIIDG 66 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecchhhcc----------c----CCcCCCHHHHHHHHHHHhcCCC--EEEeC
Confidence 58899999999999999999955443 457777661 0 1112233455555566666655 57788
Q ss_pred cC
Q 040913 271 VC 272 (425)
Q Consensus 271 vw 272 (425)
..
T Consensus 67 ~~ 68 (167)
T PRK08118 67 NY 68 (167)
T ss_pred Cc
Confidence 75
No 48
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.43 E-value=0.00051 Score=71.63 Aligned_cols=131 Identities=11% Similarity=0.044 Sum_probs=75.5
Q ss_pred CCcccchhhHHHHHHHHhcCCCCcEEEEEEecCCCchHHHHHHhhcCcccc-----------ccccchHHHHHHHHHHhC
Q 040913 167 LDISEFERAREEWFDLLIEGPIGLSVVAILDSSGFDKTAFAADTYNNNHVK-----------FYFDCLAWILDDIIRSLM 235 (425)
Q Consensus 167 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLa~~v~~~~~~~-----------~~F~~~~wv~~~il~~l~ 235 (425)
.++||.+..++.|.+++..+. -.+.+.++|..|+||||+|+.+.+.-... .+-.|... ..+.
T Consensus 16 ddVIGQe~vv~~L~~al~~gR-LpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C~sC------~~I~ 88 (700)
T PRK12323 16 TTLVGQEHVVRALTHALEQQR-LHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQCRAC------TEID 88 (700)
T ss_pred HHHcCcHHHHHHHHHHHHhCC-CceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcccHHH------HHHH
Confidence 468999999999999998764 34566889999999999998876522110 00011111 1110
Q ss_pred CCCCCC--cc---CCCCHHHHHHHHHHH----hcCCeEEEEecccCC-ChhhHHHHHhhCCCCCCCcEE-EEecCChhHH
Q 040913 236 PPSRVT--VI---IGEDYKLKKSILRDF----LTNKKYFIALDDVCH-NIEIWDDLEEVLPDNQNGSRV-LITVINPSLL 304 (425)
Q Consensus 236 ~~~~~~--~~---~~~~~~~l~~~l~~~----l~~kr~LlVLDdvw~-~~~~~~~l~~~l~~~~~gskI-ivTTR~~~va 304 (425)
...... .. .....+++.+.+... ..++.-++|+|++.. +...++.|...+-.-..++++ ++||....+.
T Consensus 89 aG~hpDviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep~kLl 168 (700)
T PRK12323 89 AGRFVDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQKIP 168 (700)
T ss_pred cCCCCcceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCChHhhh
Confidence 000000 00 112334443333332 245677999999963 456778887777654556664 5555544444
No 49
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.41 E-value=0.00087 Score=69.40 Aligned_cols=127 Identities=10% Similarity=0.052 Sum_probs=72.7
Q ss_pred CCCcccchhhHHHHHHHHhcCCCCcEEEEEEecCCCchHHHHHHhhcCccc------cccccchHHHHHHHHHHhCCCCC
Q 040913 166 RLDISEFERAREEWFDLLIEGPIGLSVVAILDSSGFDKTAFAADTYNNNHV------KFYFDCLAWILDDIIRSLMPPSR 239 (425)
Q Consensus 166 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLa~~v~~~~~~------~~~F~~~~wv~~~il~~l~~~~~ 239 (425)
-.+++|.+..+..|.+.+..+. -.+.+-++|+.|+||||+|+.+.+.-.. ..+..|.... .+.....
T Consensus 15 f~diiGq~~~v~~L~~~i~~~r-l~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~------~i~~~~~ 87 (546)
T PRK14957 15 FAEVAGQQHALNSLVHALETQK-VHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCV------AINNNSF 87 (546)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHH------HHhcCCC
Confidence 3468899999999999887653 3455778999999999999988762110 1111221111 0000000
Q ss_pred CC--------ccCCCCHHHHHHHHHHH-hcCCeEEEEecccCC-ChhhHHHHHhhCCCCCCCcEEEEecC
Q 040913 240 VT--------VIIGEDYKLKKSILRDF-LTNKKYFIALDDVCH-NIEIWDDLEEVLPDNQNGSRVLITVI 299 (425)
Q Consensus 240 ~~--------~~~~~~~~~l~~~l~~~-l~~kr~LlVLDdvw~-~~~~~~~l~~~l~~~~~gskIivTTR 299 (425)
.. .....+...+.+.+... ..+++-++|+|++.. +...++.+...+......+++|++|.
T Consensus 88 ~dlieidaas~~gvd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~fIL~Tt 157 (546)
T PRK14957 88 IDLIEIDAASRTGVEETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILATT 157 (546)
T ss_pred CceEEeecccccCHHHHHHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCceEEEEEC
Confidence 00 00011222333333321 246777999999952 44677788877776555666554443
No 50
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=97.40 E-value=0.0011 Score=69.71 Aligned_cols=128 Identities=13% Similarity=0.111 Sum_probs=71.6
Q ss_pred CCCcccchhhHHHHHHHHhcCCCCcEEEEEEecCCCchHHHHHHhhcCccccc------cccchHHHHHHHHHHhCCCCC
Q 040913 166 RLDISEFERAREEWFDLLIEGPIGLSVVAILDSSGFDKTAFAADTYNNNHVKF------YFDCLAWILDDIIRSLMPPSR 239 (425)
Q Consensus 166 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLa~~v~~~~~~~~------~F~~~~wv~~~il~~l~~~~~ 239 (425)
-.+++|.+..+..|.+++..+. -.+.+.++|..|+||||+|+.+.+.-.... +-.|.. .+.+.....
T Consensus 15 FddIIGQe~vv~~L~~ai~~~r-l~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~s------Cr~i~~g~~ 87 (709)
T PRK08691 15 FADLVGQEHVVKALQNALDEGR-LHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQS------CTQIDAGRY 87 (709)
T ss_pred HHHHcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHH------HHHHhccCc
Confidence 3568999999999999988754 245678999999999999998866211111 111111 001100000
Q ss_pred CC-----ccCCCCHHHHHHHHHHH----hcCCeEEEEecccCC-ChhhHHHHHhhCCCCCCCcEEEEecCC
Q 040913 240 VT-----VIIGEDYKLKKSILRDF----LTNKKYFIALDDVCH-NIEIWDDLEEVLPDNQNGSRVLITVIN 300 (425)
Q Consensus 240 ~~-----~~~~~~~~~l~~~l~~~----l~~kr~LlVLDdvw~-~~~~~~~l~~~l~~~~~gskIivTTR~ 300 (425)
.. .......+.+.+.+... ..+++-++|+|++.. +....+.+...+..-...+++|++|.+
T Consensus 88 ~DvlEidaAs~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILaTtd 158 (709)
T PRK08691 88 VDLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTD 158 (709)
T ss_pred cceEEEeccccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEEeCC
Confidence 00 00112233333332211 235777999999962 334566666666544445666666644
No 51
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=97.39 E-value=0.00081 Score=67.30 Aligned_cols=50 Identities=18% Similarity=0.040 Sum_probs=39.3
Q ss_pred CCCCCCcccchhhHHHHHHHHhcC-----------CCCcEEEEEEecCCCchHHHHHHhhc
Q 040913 163 GQPRLDISEFERAREEWFDLLIEG-----------PIGLSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 163 ~~~~~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
.....++.|++..+++|.+.+... -..++-|.++|++|+|||++|+.+++
T Consensus 127 ~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~ 187 (389)
T PRK03992 127 NVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAH 187 (389)
T ss_pred CCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHH
Confidence 344567889999999998876431 12356688999999999999999998
No 52
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=97.38 E-value=0.0013 Score=67.74 Aligned_cols=135 Identities=12% Similarity=0.036 Sum_probs=76.6
Q ss_pred CCcccchhhHHHHHHHHhcCCCCcEEEEEEecCCCchHHHHHHhhcCcccc----------ccccchHHHHHHHHHHhCC
Q 040913 167 LDISEFERAREEWFDLLIEGPIGLSVVAILDSSGFDKTAFAADTYNNNHVK----------FYFDCLAWILDDIIRSLMP 236 (425)
Q Consensus 167 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLa~~v~~~~~~~----------~~F~~~~wv~~~il~~l~~ 236 (425)
.+++|.+.....|.+.+..+. -.+.+-++|+.|+||||+|+.+.+.-... .+..|.... .|......
T Consensus 21 ~dliGq~~vv~~L~~ai~~~r-i~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C~~C~--~i~~~~h~ 97 (507)
T PRK06645 21 AELQGQEVLVKVLSYTILNDR-LAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCTNCI--SFNNHNHP 97 (507)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCChHHH--HHhcCCCC
Confidence 468899999998888777654 34567889999999999999987632111 112221111 11100000
Q ss_pred CCCC-CccCCCCHHHHHHHHHHH----hcCCeEEEEecccCC-ChhhHHHHHhhCCCCCCCcEEE-EecCChhHH
Q 040913 237 PSRV-TVIIGEDYKLKKSILRDF----LTNKKYFIALDDVCH-NIEIWDDLEEVLPDNQNGSRVL-ITVINPSLL 304 (425)
Q Consensus 237 ~~~~-~~~~~~~~~~l~~~l~~~----l~~kr~LlVLDdvw~-~~~~~~~l~~~l~~~~~gskIi-vTTR~~~va 304 (425)
.... ........+++...+... +.+++-++|+|+++. +...++.+...+......+.+| +||+...+.
T Consensus 98 Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte~~kI~ 172 (507)
T PRK06645 98 DIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQKIP 172 (507)
T ss_pred cEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCChHHhh
Confidence 0000 000112334443333222 246778999999973 3567888888877655566655 455555544
No 53
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.37 E-value=0.00093 Score=64.61 Aligned_cols=108 Identities=19% Similarity=0.213 Sum_probs=68.2
Q ss_pred CCCCcccchhhHHHHHHHHhcCCC-CcEEEEEEecCCCchHHHHHHhhcCccccccc----cchHHH--HHHHHHHhCCC
Q 040913 165 PRLDISEFERAREEWFDLLIEGPI-GLSVVAILDSSGFDKTAFAADTYNNNHVKFYF----DCLAWI--LDDIIRSLMPP 237 (425)
Q Consensus 165 ~~~~~vGr~~~~~~l~~~L~~~~~-~~~vi~IvG~gGvGKTtLa~~v~~~~~~~~~F----~~~~wv--~~~il~~l~~~ 237 (425)
-++.+.+|+.+...+..++...+. -++.|-|.|..|.|||.+.+++++......-| +|.-|- +..|+.+....
T Consensus 4 l~~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~~~vw~n~~ecft~~~lle~IL~~~~~~ 83 (438)
T KOG2543|consen 4 LEPNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKLNLENVWLNCVECFTYAILLEKILNKSQLA 83 (438)
T ss_pred cccCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhcCCcceeeehHHhccHHHHHHHHHHHhccC
Confidence 356788999999999999988765 35556899999999999999999965333222 111122 78888888522
Q ss_pred CCCCccCC---CCHHHHHHHHHH--Hhc--CCeEEEEecccC
Q 040913 238 SRVTVIIG---EDYKLKKSILRD--FLT--NKKYFIALDDVC 272 (425)
Q Consensus 238 ~~~~~~~~---~~~~~l~~~l~~--~l~--~kr~LlVLDdvw 272 (425)
...+.... ....+....+.. ... ++.++||||++.
T Consensus 84 d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad 125 (438)
T KOG2543|consen 84 DKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNAD 125 (438)
T ss_pred CCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHH
Confidence 22111111 111222222222 111 468999999996
No 54
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=97.34 E-value=0.00035 Score=66.98 Aligned_cols=96 Identities=23% Similarity=0.221 Sum_probs=54.0
Q ss_pred cEEEEEEecCCCchHHHHHHhhcCccccccccchHHHHHHHHHHhCCCCCCCccCCCCHHHHHHHHHHH--hcCCeEEEE
Q 040913 190 LSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWILDDIIRSLMPPSRVTVIIGEDYKLKKSILRDF--LTNKKYFIA 267 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~--l~~kr~LlV 267 (425)
+..+-.||++|+||||||+.+.+..+-...|-...- .. .....+...+.+.-++. +.++|..|.
T Consensus 162 ipSmIlWGppG~GKTtlArlia~tsk~~SyrfvelS------------At--~a~t~dvR~ife~aq~~~~l~krkTilF 227 (554)
T KOG2028|consen 162 IPSMILWGPPGTGKTTLARLIASTSKKHSYRFVELS------------AT--NAKTNDVRDIFEQAQNEKSLTKRKTILF 227 (554)
T ss_pred CCceEEecCCCCchHHHHHHHHhhcCCCceEEEEEe------------cc--ccchHHHHHHHHHHHHHHhhhcceeEEE
Confidence 666778999999999999999985443332211000 00 11112223333333322 357889999
Q ss_pred ecccC-CChhhHHHHHhhCCCCCCCcEEEE--ecCChh
Q 040913 268 LDDVC-HNIEIWDDLEEVLPDNQNGSRVLI--TVINPS 302 (425)
Q Consensus 268 LDdvw-~~~~~~~~l~~~l~~~~~gskIiv--TTR~~~ 302 (425)
+|.|- ++..+-+ ..||.-.+|+-++| ||.|.+
T Consensus 228 iDEiHRFNksQQD---~fLP~VE~G~I~lIGATTENPS 262 (554)
T KOG2028|consen 228 IDEIHRFNKSQQD---TFLPHVENGDITLIGATTENPS 262 (554)
T ss_pred eHHhhhhhhhhhh---cccceeccCceEEEecccCCCc
Confidence 99994 1333222 34566666776555 565544
No 55
>PRK06526 transposase; Provisional
Probab=97.32 E-value=0.00028 Score=66.24 Aligned_cols=70 Identities=14% Similarity=0.125 Sum_probs=39.0
Q ss_pred EEEEEEecCCCchHHHHHHhhcCccccccccchHHH-HHHHHHHhCCCCCCCccCCCCHHHHHHHHHHHhcCCeEEEEec
Q 040913 191 SVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWI-LDDIIRSLMPPSRVTVIIGEDYKLKKSILRDFLTNKKYFIALD 269 (425)
Q Consensus 191 ~vi~IvG~gGvGKTtLa~~v~~~~~~~~~F~~~~wv-~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~kr~LlVLD 269 (425)
.-+.++|++|+|||+||..+.+... ...+. +.|+ ..+++..+..... .. .+...+... .+.-|||+|
T Consensus 99 ~nlll~Gp~GtGKThLa~al~~~a~-~~g~~-v~f~t~~~l~~~l~~~~~-----~~---~~~~~l~~l--~~~dlLIID 166 (254)
T PRK06526 99 ENVVFLGPPGTGKTHLAIGLGIRAC-QAGHR-VLFATAAQWVARLAAAHH-----AG---RLQAELVKL--GRYPLLIVD 166 (254)
T ss_pred ceEEEEeCCCCchHHHHHHHHHHHH-HCCCc-hhhhhHHHHHHHHHHHHh-----cC---cHHHHHHHh--ccCCEEEEc
Confidence 4578999999999999999876321 12222 2333 4444444432211 01 112222222 234589999
Q ss_pred ccC
Q 040913 270 DVC 272 (425)
Q Consensus 270 dvw 272 (425)
|+.
T Consensus 167 D~g 169 (254)
T PRK06526 167 EVG 169 (254)
T ss_pred ccc
Confidence 996
No 56
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.32 E-value=0.00075 Score=68.99 Aligned_cols=46 Identities=11% Similarity=0.020 Sum_probs=36.9
Q ss_pred CCCcccchhhHHHHHHHHhcCCCCcEEEEEEecCCCchHHHHHHhhc
Q 040913 166 RLDISEFERAREEWFDLLIEGPIGLSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 166 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
-.+++|.+.....|...+..+. -.+.+-++|++|+||||+|+.+.+
T Consensus 13 ~~divGq~~i~~~L~~~i~~~~-l~~~~Lf~GPpGtGKTTlA~~lA~ 58 (472)
T PRK14962 13 FSEVVGQDHVKKLIINALKKNS-ISHAYIFAGPRGTGKTTVARILAK 58 (472)
T ss_pred HHHccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHH
Confidence 3568999888888877776654 335678999999999999999876
No 57
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.31 E-value=0.00071 Score=72.87 Aligned_cols=132 Identities=10% Similarity=0.030 Sum_probs=73.4
Q ss_pred CCCcccchhhHHHHHHHHhcCCCCcEEEEEEecCCCchHHHHHHhhcCccccc------cccchHHHHHHHHHHhCCCCC
Q 040913 166 RLDISEFERAREEWFDLLIEGPIGLSVVAILDSSGFDKTAFAADTYNNNHVKF------YFDCLAWILDDIIRSLMPPSR 239 (425)
Q Consensus 166 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLa~~v~~~~~~~~------~F~~~~wv~~~il~~l~~~~~ 239 (425)
-.+++|.+..+..|.+++..+. -.+.+.++|+.|+||||+|+.+.+.-.... +..|..-. .|.........
T Consensus 15 FddIIGQe~Iv~~LknaI~~~r-l~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~--~i~~g~~~Dvi 91 (944)
T PRK14949 15 FEQMVGQSHVLHALTNALTQQR-LHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCV--EIAQGRFVDLI 91 (944)
T ss_pred HHHhcCcHHHHHHHHHHHHhCC-CCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHH--HHhcCCCceEE
Confidence 3568999999999999887654 345567999999999999999887321111 11111100 01000000000
Q ss_pred -CCccCCCCH---HHHHHHHHH-HhcCCeEEEEecccCC-ChhhHHHHHhhCCCCCCCcEEEEecCC
Q 040913 240 -VTVIIGEDY---KLKKSILRD-FLTNKKYFIALDDVCH-NIEIWDDLEEVLPDNQNGSRVLITVIN 300 (425)
Q Consensus 240 -~~~~~~~~~---~~l~~~l~~-~l~~kr~LlVLDdvw~-~~~~~~~l~~~l~~~~~gskIivTTR~ 300 (425)
......... .++...+.. ...+++-++|+|++.. +....+.|...+-.-....++|++|.+
T Consensus 92 EidAas~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILaTTe 158 (944)
T PRK14949 92 EVDAASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTD 158 (944)
T ss_pred EeccccccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEECCC
Confidence 000001122 233322221 1246778999999953 456778887777655556666555544
No 58
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=97.29 E-value=0.0016 Score=64.95 Aligned_cols=128 Identities=10% Similarity=0.011 Sum_probs=70.4
Q ss_pred CCcccchhhHHHHHHHHhcCCC--------CcEEEEEEecCCCchHHHHHHhhcCcccc--------ccccchHHHHHHH
Q 040913 167 LDISEFERAREEWFDLLIEGPI--------GLSVVAILDSSGFDKTAFAADTYNNNHVK--------FYFDCLAWILDDI 230 (425)
Q Consensus 167 ~~~vGr~~~~~~l~~~L~~~~~--------~~~vi~IvG~gGvGKTtLa~~v~~~~~~~--------~~F~~~~wv~~~i 230 (425)
.+++|.+..++.|.+.+..+.. -.+.+-++|+.|+||||+|..+.+.-... .+-.|+.+.
T Consensus 5 ~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~---- 80 (394)
T PRK07940 5 DDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVL---- 80 (394)
T ss_pred hhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHh----
Confidence 4588999999999999987531 35668899999999999998875421100 011111111
Q ss_pred HHHhCCCCC--CCccCCCCHHHHHHHHHHHh-----cCCeEEEEecccCC-ChhhHHHHHhhCCCCCCCcEEEEecCC
Q 040913 231 IRSLMPPSR--VTVIIGEDYKLKKSILRDFL-----TNKKYFIALDDVCH-NIEIWDDLEEVLPDNQNGSRVLITVIN 300 (425)
Q Consensus 231 l~~l~~~~~--~~~~~~~~~~~l~~~l~~~l-----~~kr~LlVLDdvw~-~~~~~~~l~~~l~~~~~gskIivTTR~ 300 (425)
..-..... .++......+++.. +.+.+ .+++-++++|++.. +....+.+...+.....++.+|++|.+
T Consensus 81 -~~~hpD~~~i~~~~~~i~i~~iR~-l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~LEep~~~~~fIL~a~~ 156 (394)
T PRK07940 81 -AGTHPDVRVVAPEGLSIGVDEVRE-LVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVEEPPPRTVWLLCAPS 156 (394)
T ss_pred -cCCCCCEEEeccccccCCHHHHHH-HHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHhhcCCCCCeEEEEECC
Confidence 00000000 00001123333332 22222 24556888899963 345556676666555556666666655
No 59
>PRK08181 transposase; Validated
Probab=97.28 E-value=0.00024 Score=67.15 Aligned_cols=98 Identities=18% Similarity=0.147 Sum_probs=50.1
Q ss_pred EEEEEecCCCchHHHHHHhhcCccccccccchHHH-HHHHHHHhCCCCCCCccCCCCHHHHHHHHHHHhcCCeEEEEecc
Q 040913 192 VVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWI-LDDIIRSLMPPSRVTVIIGEDYKLKKSILRDFLTNKKYFIALDD 270 (425)
Q Consensus 192 vi~IvG~gGvGKTtLa~~v~~~~~~~~~F~~~~wv-~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~kr~LlVLDd 270 (425)
-+.++|++|+|||.||..+.+ ........+.++ ..+++..+..... ..+.......+ .+-=||||||
T Consensus 108 nlll~Gp~GtGKTHLa~Aia~--~a~~~g~~v~f~~~~~L~~~l~~a~~-----~~~~~~~l~~l-----~~~dLLIIDD 175 (269)
T PRK08181 108 NLLLFGPPGGGKSHLAAAIGL--ALIENGWRVLFTRTTDLVQKLQVARR-----ELQLESAIAKL-----DKFDLLILDD 175 (269)
T ss_pred eEEEEecCCCcHHHHHHHHHH--HHHHcCCceeeeeHHHHHHHHHHHHh-----CCcHHHHHHHH-----hcCCEEEEec
Confidence 478999999999999999987 332222122333 4444444432211 11222222222 2345999999
Q ss_pred cCC-ChhhH--HHHHhhCCCCCCCcEEEEecCCh
Q 040913 271 VCH-NIEIW--DDLEEVLPDNQNGSRVLITVINP 301 (425)
Q Consensus 271 vw~-~~~~~--~~l~~~l~~~~~gskIivTTR~~ 301 (425)
+.. ....| ..+...+...-.+..+||||...
T Consensus 176 lg~~~~~~~~~~~Lf~lin~R~~~~s~IiTSN~~ 209 (269)
T PRK08181 176 LAYVTKDQAETSVLFELISARYERRSILITANQP 209 (269)
T ss_pred cccccCCHHHHHHHHHHHHHHHhCCCEEEEcCCC
Confidence 952 11222 22333332211123578888653
No 60
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=97.26 E-value=0.0017 Score=64.01 Aligned_cols=136 Identities=11% Similarity=0.009 Sum_probs=72.2
Q ss_pred CCCcccchhhHHHHHHHHhcCCCCcEEEEEEecCCCchHHHHHHhhcCccc--cccc-cchHHH-HHHHHHHhCCCCCC-
Q 040913 166 RLDISEFERAREEWFDLLIEGPIGLSVVAILDSSGFDKTAFAADTYNNNHV--KFYF-DCLAWI-LDDIIRSLMPPSRV- 240 (425)
Q Consensus 166 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLa~~v~~~~~~--~~~F-~~~~wv-~~~il~~l~~~~~~- 240 (425)
-.+++|.+..++.+.+++..+. -.+.+-++|++|+||||+|+.+...-.. ...| .|..+. -..+..........
T Consensus 13 ~~~iig~~~~~~~l~~~~~~~~-~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~~~~ 91 (355)
T TIGR02397 13 FEDVIGQEHIVQTLKNAIKNGR-IAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDVIEI 91 (355)
T ss_pred HhhccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEe
Confidence 3468999999999999887654 3456788999999999999877652110 0011 111000 00011000000000
Q ss_pred CccCCCCH---HHHHHHHHHH-hcCCeEEEEecccCC-ChhhHHHHHhhCCCCCCCcEEEEecCChh
Q 040913 241 TVIIGEDY---KLKKSILRDF-LTNKKYFIALDDVCH-NIEIWDDLEEVLPDNQNGSRVLITVINPS 302 (425)
Q Consensus 241 ~~~~~~~~---~~l~~~l~~~-l~~kr~LlVLDdvw~-~~~~~~~l~~~l~~~~~gskIivTTR~~~ 302 (425)
........ ..+.+.+... ..+++-++|+|++.. +....+.+...+......+.+|++|.+..
T Consensus 92 ~~~~~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~lIl~~~~~~ 158 (355)
T TIGR02397 92 DAASNNGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVFILATTEPH 158 (355)
T ss_pred eccccCCHHHHHHHHHHHhcCcccCCceEEEEeChhhcCHHHHHHHHHHHhCCccceeEEEEeCCHH
Confidence 00001122 2233332211 234566899999852 34567777777755555667666665443
No 61
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.25 E-value=0.00065 Score=68.08 Aligned_cols=100 Identities=15% Similarity=0.078 Sum_probs=61.6
Q ss_pred CCCcccchhhHHHHHHHHhcCCCCcEEEEEEecCCCchHHHHHHhhcCccccccccchHHH-------HHHHHHHhCCCC
Q 040913 166 RLDISEFERAREEWFDLLIEGPIGLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWI-------LDDIIRSLMPPS 238 (425)
Q Consensus 166 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLa~~v~~~~~~~~~F~~~~wv-------~~~il~~l~~~~ 238 (425)
..++++.+...+.++..|... +.|.++|++|+|||++|+.+.+......+|+...|| ..+.+..+....
T Consensus 174 l~d~~i~e~~le~l~~~L~~~----~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~rP~~ 249 (459)
T PRK11331 174 LNDLFIPETTIETILKRLTIK----KNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYRPNG 249 (459)
T ss_pred hhcccCCHHHHHHHHHHHhcC----CCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcccCCCC
Confidence 345788899999999998863 467789999999999999998743333455555555 445444332221
Q ss_pred CCCccCCCCHHHHHHHHHHHh--cCCeEEEEecccC
Q 040913 239 RVTVIIGEDYKLKKSILRDFL--TNKKYFIALDDVC 272 (425)
Q Consensus 239 ~~~~~~~~~~~~l~~~l~~~l--~~kr~LlVLDdvw 272 (425)
. +.. ....-..+.+...- .+++++||+|++.
T Consensus 250 v--gy~-~~~G~f~~~~~~A~~~p~~~~vliIDEIN 282 (459)
T PRK11331 250 V--GFR-RKDGIFYNFCQQAKEQPEKKYVFIIDEIN 282 (459)
T ss_pred C--CeE-ecCchHHHHHHHHHhcccCCcEEEEehhh
Confidence 1 100 00111222222222 2478999999994
No 62
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=97.25 E-value=0.0015 Score=68.05 Aligned_cols=127 Identities=13% Similarity=0.108 Sum_probs=70.5
Q ss_pred CCCcccchhhHHHHHHHHhcCCCCcEEEEEEecCCCchHHHHHHhhcCccccc------cccchHHHHHHHHHHhCCCCC
Q 040913 166 RLDISEFERAREEWFDLLIEGPIGLSVVAILDSSGFDKTAFAADTYNNNHVKF------YFDCLAWILDDIIRSLMPPSR 239 (425)
Q Consensus 166 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLa~~v~~~~~~~~------~F~~~~wv~~~il~~l~~~~~ 239 (425)
-.+++|.+..++.+.+.+..+. -.+.+-++|+.|+||||+|+.+.+.-.... +-.|.. .+.+.....
T Consensus 15 F~dIIGQe~iv~~L~~aI~~~r-l~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~s------Cr~i~~~~h 87 (605)
T PRK05896 15 FKQIIGQELIKKILVNAILNNK-LTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSV------CESINTNQS 87 (605)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHH------HHHHHcCCC
Confidence 3568899999999999887654 245678999999999999998866211111 111111 111111110
Q ss_pred CC--cc---CCCCHHHHHHHH---HHH-hcCCeEEEEecccCC-ChhhHHHHHhhCCCCCCCcEEEEecC
Q 040913 240 VT--VI---IGEDYKLKKSIL---RDF-LTNKKYFIALDDVCH-NIEIWDDLEEVLPDNQNGSRVLITVI 299 (425)
Q Consensus 240 ~~--~~---~~~~~~~l~~~l---~~~-l~~kr~LlVLDdvw~-~~~~~~~l~~~l~~~~~gskIivTTR 299 (425)
.. .. .....+++...+ ... ..+++-++|+|++.. +...++.+...+......+.+|++|.
T Consensus 88 ~DiieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt 157 (605)
T PRK05896 88 VDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATT 157 (605)
T ss_pred CceEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECC
Confidence 00 00 112223332222 111 123455799999963 45677777777765454566555553
No 63
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.25 E-value=0.0015 Score=67.76 Aligned_cols=127 Identities=10% Similarity=0.070 Sum_probs=71.1
Q ss_pred CCcccchhhHHHHHHHHhcCCCCcEEEEEEecCCCchHHHHHHhhcCcccc------ccccchHHHHHHHHHHhCCCCCC
Q 040913 167 LDISEFERAREEWFDLLIEGPIGLSVVAILDSSGFDKTAFAADTYNNNHVK------FYFDCLAWILDDIIRSLMPPSRV 240 (425)
Q Consensus 167 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLa~~v~~~~~~~------~~F~~~~wv~~~il~~l~~~~~~ 240 (425)
.+++|.+..++.+.+++..+. -.+.+-++|+.|+||||+|+.+.+.-... .+-.|..- ..+......
T Consensus 16 ~divGq~~v~~~L~~~i~~~~-~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C------~~i~~~~~~ 88 (527)
T PRK14969 16 SELVGQEHVVRALTNALEQQR-LHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSAC------LEIDSGRFV 88 (527)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-CCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHH------HHHhcCCCC
Confidence 568999999999999988754 23556789999999999998886521111 11111100 000000000
Q ss_pred C----c-cCCCCHHHHHHHHHHH----hcCCeEEEEecccCC-ChhhHHHHHhhCCCCCCCcEEEEecCC
Q 040913 241 T----V-IIGEDYKLKKSILRDF----LTNKKYFIALDDVCH-NIEIWDDLEEVLPDNQNGSRVLITVIN 300 (425)
Q Consensus 241 ~----~-~~~~~~~~l~~~l~~~----l~~kr~LlVLDdvw~-~~~~~~~l~~~l~~~~~gskIivTTR~ 300 (425)
. + ......+++.+.+... ..+++-++|+|++.. +....+.+...+..-...+.+|++|.+
T Consensus 89 d~~ei~~~~~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~fIL~t~d 158 (527)
T PRK14969 89 DLIEVDAASNTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTD 158 (527)
T ss_pred ceeEeeccccCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEEEEEeCC
Confidence 0 0 0112233333222221 135677999999962 345677777777665556666655543
No 64
>PHA00729 NTP-binding motif containing protein
Probab=97.25 E-value=0.0017 Score=59.33 Aligned_cols=85 Identities=16% Similarity=0.175 Sum_probs=48.2
Q ss_pred HHHHHhcCCCCcEEEEEEecCCCchHHHHHHhhcCcccccccc-----chHHHHHHHHHHhCCCCCCCccCCCCHHHHHH
Q 040913 179 WFDLLIEGPIGLSVVAILDSSGFDKTAFAADTYNNNHVKFYFD-----CLAWILDDIIRSLMPPSRVTVIIGEDYKLKKS 253 (425)
Q Consensus 179 l~~~L~~~~~~~~vi~IvG~gGvGKTtLa~~v~~~~~~~~~F~-----~~~wv~~~il~~l~~~~~~~~~~~~~~~~l~~ 253 (425)
+++.+.... ...|.|.|.+|+||||||..+.+ ++..++. ...| .+.. .....+.+.+..
T Consensus 8 ~~~~l~~~~--f~nIlItG~pGvGKT~LA~aLa~--~l~~~l~~l~~~~~~~----------d~~~--~~~fid~~~Ll~ 71 (226)
T PHA00729 8 IVSAYNNNG--FVSAVIFGKQGSGKTTYALKVAR--DVFWKLNNLSTKDDAW----------QYVQ--NSYFFELPDALE 71 (226)
T ss_pred HHHHHhcCC--eEEEEEECCCCCCHHHHHHHHHH--HHHhhcccccchhhHH----------hcCC--cEEEEEHHHHHH
Confidence 444454443 45688999999999999999887 3211110 0111 0000 112345677777
Q ss_pred HHHHHhcC-Ce-EEEEeccc--CCChhhHH
Q 040913 254 ILRDFLTN-KK-YFIALDDV--CHNIEIWD 279 (425)
Q Consensus 254 ~l~~~l~~-kr-~LlVLDdv--w~~~~~~~ 279 (425)
.+....++ .+ =|||+||+ |-+...|.
T Consensus 72 ~L~~a~~~~~~~dlLIIDd~G~~~~~~~wh 101 (226)
T PHA00729 72 KIQDAIDNDYRIPLIIFDDAGIWLSKYVWY 101 (226)
T ss_pred HHHHHHhcCCCCCEEEEeCCchhhcccchh
Confidence 77766644 22 37999994 42223455
No 65
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.24 E-value=0.0014 Score=68.94 Aligned_cols=134 Identities=9% Similarity=0.056 Sum_probs=73.0
Q ss_pred CCCcccchhhHHHHHHHHhcCCCCcEEEEEEecCCCchHHHHHHhhcCccccc-------cc-cchHHHHHHHHHHhCCC
Q 040913 166 RLDISEFERAREEWFDLLIEGPIGLSVVAILDSSGFDKTAFAADTYNNNHVKF-------YF-DCLAWILDDIIRSLMPP 237 (425)
Q Consensus 166 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLa~~v~~~~~~~~-------~F-~~~~wv~~~il~~l~~~ 237 (425)
-.+++|-+..+..|.+++..+. -...+-++|..|+||||+|+.+.+.-.... .+ .|..- ...+.+...
T Consensus 15 f~dviGQe~vv~~L~~~l~~~r-l~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg~C---~~C~~i~~g 90 (618)
T PRK14951 15 FSEMVGQEHVVQALTNALTQQR-LHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCGVC---QACRDIDSG 90 (618)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCCcc---HHHHHHHcC
Confidence 3568898888888888888764 346678999999999999988844211000 00 11000 001111110
Q ss_pred CCCC--cc---CCCCHHHHHHHHHHH----hcCCeEEEEecccCC-ChhhHHHHHhhCCCCCCCcEEEEec-CChhH
Q 040913 238 SRVT--VI---IGEDYKLKKSILRDF----LTNKKYFIALDDVCH-NIEIWDDLEEVLPDNQNGSRVLITV-INPSL 303 (425)
Q Consensus 238 ~~~~--~~---~~~~~~~l~~~l~~~----l~~kr~LlVLDdvw~-~~~~~~~l~~~l~~~~~gskIivTT-R~~~v 303 (425)
.... .. .....+++.+.+... ..++.-++|+|+|.. +...++.+...+..-...+++|++| ....+
T Consensus 91 ~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd~~ki 167 (618)
T PRK14951 91 RFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQKV 167 (618)
T ss_pred CCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECCchhh
Confidence 0000 00 112233333322221 124566899999963 4567888887776655566665554 43333
No 66
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.23 E-value=0.0011 Score=62.61 Aligned_cols=45 Identities=11% Similarity=0.085 Sum_probs=32.2
Q ss_pred CcccchhhHHHHHHH---Hhc-------C---CCCcEEEEEEecCCCchHHHHHHhhc
Q 040913 168 DISEFERAREEWFDL---LIE-------G---PIGLSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 168 ~~vGr~~~~~~l~~~---L~~-------~---~~~~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
.++|.+..+++|.+. +.- + .+...-+.++|++|+||||+|+.+.+
T Consensus 7 ~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~ 64 (261)
T TIGR02881 7 RMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGK 64 (261)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHH
Confidence 478988887776433 311 1 12355677899999999999999876
No 67
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=97.22 E-value=0.0032 Score=65.66 Aligned_cols=55 Identities=15% Similarity=0.216 Sum_probs=43.6
Q ss_pred CCCCCcccchhhHHHHHHHHhcC----CCCcEEEEEEecCCCchHHHHHHhhcCccccccc
Q 040913 164 QPRLDISEFERAREEWFDLLIEG----PIGLSVVAILDSSGFDKTAFAADTYNNNHVKFYF 220 (425)
Q Consensus 164 ~~~~~~vGr~~~~~~l~~~L~~~----~~~~~vi~IvG~gGvGKTtLa~~v~~~~~~~~~F 220 (425)
.-+.+-+|.++.+++|++.|--. .-.-+++..||++|+|||+|++.|.. -..+.|
T Consensus 320 iLd~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~--al~Rkf 378 (782)
T COG0466 320 ILDKDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAK--ALGRKF 378 (782)
T ss_pred HhcccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHH--HhCCCE
Confidence 33566789999999999998642 33468999999999999999999987 444444
No 68
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=97.22 E-value=0.0011 Score=61.12 Aligned_cols=45 Identities=9% Similarity=0.138 Sum_probs=29.3
Q ss_pred cccchhhHHHHHHHHhcCCCCcEEEEEEecCCCchHHHHHHhhcC
Q 040913 169 ISEFERAREEWFDLLIEGPIGLSVVAILDSSGFDKTAFAADTYNN 213 (425)
Q Consensus 169 ~vGr~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLa~~v~~~ 213 (425)
+.|..+.....+..+.........+.|+|..|+|||+||+.+++.
T Consensus 21 ~~~~~~~~~~~l~~~~~~~~~~~~~~l~G~~G~GKT~La~ai~~~ 65 (227)
T PRK08903 21 VAGENAELVARLRELAAGPVADRFFYLWGEAGSGRSHLLQALVAD 65 (227)
T ss_pred ccCCcHHHHHHHHHHHhccCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 345544443333333332223456789999999999999999883
No 69
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.20 E-value=0.00038 Score=76.28 Aligned_cols=44 Identities=18% Similarity=0.131 Sum_probs=37.1
Q ss_pred CCcccchhhHHHHHHHHhcCCCCcEEEEEEecCCCchHHHHHHhhc
Q 040913 167 LDISEFERAREEWFDLLIEGPIGLSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 167 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
..++||+++++++++.|.....+ -+.++|++|+|||++|+.+..
T Consensus 179 ~~~igr~~ei~~~~~~L~r~~~~--n~lL~G~pGvGKTal~~~la~ 222 (821)
T CHL00095 179 DPVIGREKEIERVIQILGRRTKN--NPILIGEPGVGKTAIAEGLAQ 222 (821)
T ss_pred CCCCCcHHHHHHHHHHHcccccC--CeEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999876522 345899999999999988877
No 70
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.20 E-value=0.00078 Score=55.92 Aligned_cols=23 Identities=26% Similarity=0.343 Sum_probs=20.7
Q ss_pred EEEEEEecCCCchHHHHHHhhcC
Q 040913 191 SVVAILDSSGFDKTAFAADTYNN 213 (425)
Q Consensus 191 ~vi~IvG~gGvGKTtLa~~v~~~ 213 (425)
..+.|+|++|+||||+++.+...
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~ 25 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARE 25 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhc
Confidence 57889999999999999999884
No 71
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.20 E-value=0.0024 Score=64.81 Aligned_cols=135 Identities=12% Similarity=0.048 Sum_probs=73.5
Q ss_pred CCCcccchhhHHHHHHHHhcCCCCcEEEEEEecCCCchHHHHHHhhcCccccc------cccchHHHHHHHHHHhCCCCC
Q 040913 166 RLDISEFERAREEWFDLLIEGPIGLSVVAILDSSGFDKTAFAADTYNNNHVKF------YFDCLAWILDDIIRSLMPPSR 239 (425)
Q Consensus 166 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLa~~v~~~~~~~~------~F~~~~wv~~~il~~l~~~~~ 239 (425)
-.+++|.+.....|..++..+. -.+.+.++|+.|+||||+|+.+.+.-.... +..|... ..|.........
T Consensus 17 f~dvVGQe~iv~~L~~~i~~~r-i~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~sC--~~i~~g~~~dvi 93 (484)
T PRK14956 17 FRDVIHQDLAIGALQNALKSGK-IGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTSC--LEITKGISSDVL 93 (484)
T ss_pred HHHHhChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcHH--HHHHccCCccce
Confidence 3568999999999999888765 234678999999999999999876321110 1111111 111111111000
Q ss_pred CCcc-CCCCH---HHHHHHHHHH-hcCCeEEEEecccCC-ChhhHHHHHhhCCCCCCCcEEE-EecCChhH
Q 040913 240 VTVI-IGEDY---KLKKSILRDF-LTNKKYFIALDDVCH-NIEIWDDLEEVLPDNQNGSRVL-ITVINPSL 303 (425)
Q Consensus 240 ~~~~-~~~~~---~~l~~~l~~~-l~~kr~LlVLDdvw~-~~~~~~~l~~~l~~~~~gskIi-vTTR~~~v 303 (425)
.-+. ..... .++.+.+... ..++.-++|+|++.. +.+.++.+...+.........| .||....+
T Consensus 94 EIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI 164 (484)
T PRK14956 94 EIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKI 164 (484)
T ss_pred eechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhc
Confidence 0000 01112 2233333221 235667999999963 4567888877775544445544 44444444
No 72
>PRK08084 DNA replication initiation factor; Provisional
Probab=97.19 E-value=0.0011 Score=61.64 Aligned_cols=23 Identities=4% Similarity=0.118 Sum_probs=20.6
Q ss_pred cEEEEEEecCCCchHHHHHHhhc
Q 040913 190 LSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
...+.|+|+.|+|||+|++.+++
T Consensus 45 ~~~l~l~Gp~G~GKThLl~a~~~ 67 (235)
T PRK08084 45 SGYIYLWSREGAGRSHLLHAACA 67 (235)
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 45788999999999999999887
No 73
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.19 E-value=0.0022 Score=64.10 Aligned_cols=98 Identities=16% Similarity=0.143 Sum_probs=58.3
Q ss_pred CCCCCCCcccchhhHHHHHHHHhcC-----------CCCcEEEEEEecCCCchHHHHHHhhcCccccccccchHHHHHHH
Q 040913 162 EGQPRLDISEFERAREEWFDLLIEG-----------PIGLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWILDDI 230 (425)
Q Consensus 162 ~~~~~~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~IvG~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~~i 230 (425)
|.+.-.++.|.+..+++|.+.+... -...+-+.++|++|+|||+||+.+.+ ....+|-... -..+
T Consensus 140 p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~--~l~~~fi~i~--~s~l 215 (398)
T PTZ00454 140 PDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAH--HTTATFIRVV--GSEF 215 (398)
T ss_pred CCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHH--hcCCCEEEEe--hHHH
Confidence 3444567889999998887765421 12456788999999999999999998 4444442110 0111
Q ss_pred HHHhCCCCCCCccCCCCHHHHHHHHHHHhcCCeEEEEecccC
Q 040913 231 IRSLMPPSRVTVIIGEDYKLKKSILRDFLTNKKYFIALDDVC 272 (425)
Q Consensus 231 l~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~kr~LlVLDdvw 272 (425)
...... .....+...+.........+|++|++.
T Consensus 216 ~~k~~g---------e~~~~lr~lf~~A~~~~P~ILfIDEID 248 (398)
T PTZ00454 216 VQKYLG---------EGPRMVRDVFRLARENAPSIIFIDEVD 248 (398)
T ss_pred HHHhcc---------hhHHHHHHHHHHHHhcCCeEEEEECHh
Confidence 111110 112223333333334678999999975
No 74
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.19 E-value=0.00077 Score=74.02 Aligned_cols=44 Identities=11% Similarity=0.081 Sum_probs=37.1
Q ss_pred CCcccchhhHHHHHHHHhcCCCCcEEEEEEecCCCchHHHHHHhhc
Q 040913 167 LDISEFERAREEWFDLLIEGPIGLSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 167 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
..++||+.++.++++.|..... .-+.++|.+|+|||++|+.+..
T Consensus 178 ~~vigr~~ei~~~i~iL~r~~~--~n~lL~G~pGvGKT~l~~~la~ 221 (857)
T PRK10865 178 DPVIGRDEEIRRTIQVLQRRTK--NNPVLIGEPGVGKTAIVEGLAQ 221 (857)
T ss_pred CcCCCCHHHHHHHHHHHhcCCc--CceEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999987653 2344899999999999988877
No 75
>CHL00181 cbbX CbbX; Provisional
Probab=97.18 E-value=0.0028 Score=60.71 Aligned_cols=45 Identities=11% Similarity=0.091 Sum_probs=30.9
Q ss_pred CcccchhhHHHHHHHH---hcC----------CCCcEEEEEEecCCCchHHHHHHhhc
Q 040913 168 DISEFERAREEWFDLL---IEG----------PIGLSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 168 ~~vGr~~~~~~l~~~L---~~~----------~~~~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
+++|.+..+++|.++. .-. ......+.++|++|+||||+|+.+.+
T Consensus 24 ~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~ 81 (287)
T CHL00181 24 ELVGLAPVKTRIREIAALLLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMAD 81 (287)
T ss_pred hcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 4788777777664442 211 11233477899999999999999966
No 76
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=97.18 E-value=0.004 Score=67.93 Aligned_cols=89 Identities=15% Similarity=0.237 Sum_probs=56.1
Q ss_pred hHHHHHHHHHHHHHhccCCCCCCCCccCCC-----c-ccccCC--------CCCCCCCCcccchhhHHHHHHHHhc----
Q 040913 124 VGLHSKIIDIRNRMQQLPPGDNGFDINEQR-----D-ELIHLS--------SEGQPRLDISEFERAREEWFDLLIE---- 185 (425)
Q Consensus 124 ~~i~~~i~~i~~~l~~i~~~~~~~~~~~~~-----~-~~~~~~--------~~~~~~~~~vGr~~~~~~l~~~L~~---- 185 (425)
..+.+++.+-..|++.+......|.+.... + ++...+ ....-+.+++|.+..+++|.+++..
T Consensus 263 ~~~~~~~~~e~~~~~~~~~~~~~~~~~~~yl~~~~~ip~~~~~~~~~~~~~~~~~l~~~~~G~~~~k~~i~~~~~~~~~~ 342 (775)
T TIGR00763 263 EEVKKVIEKELTKLSLLEPSSSEFTVTRNYLDWLTDLPWGKYSKENLDLKRAKEILDEDHYGLKKVKERILEYLAVQKLR 342 (775)
T ss_pred HHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHCCCCcccccchhhHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhh
Confidence 345556666666777777666666533211 0 111111 1111234588999999999887642
Q ss_pred CCCCcEEEEEEecCCCchHHHHHHhhc
Q 040913 186 GPIGLSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 186 ~~~~~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
+.....++.++|++|+|||++|+.+.+
T Consensus 343 ~~~~~~~lll~GppG~GKT~lAk~iA~ 369 (775)
T TIGR00763 343 GKMKGPILCLVGPPGVGKTSLGKSIAK 369 (775)
T ss_pred cCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 222345788999999999999999988
No 77
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=97.17 E-value=0.00061 Score=61.86 Aligned_cols=100 Identities=16% Similarity=0.102 Sum_probs=54.6
Q ss_pred CCCCcccchhhHHHHHHHHh---cCCCCcEEEEEEecCCCchHHHHHHhhcCccccccccchHHHHHHHHHHhCCCCCCC
Q 040913 165 PRLDISEFERAREEWFDLLI---EGPIGLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWILDDIIRSLMPPSRVT 241 (425)
Q Consensus 165 ~~~~~vGr~~~~~~l~~~L~---~~~~~~~vi~IvG~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~~il~~l~~~~~~~ 241 (425)
.-.+++|.+.-+..+.-++. .....+.-+-.+|++|+||||||..+.+ +....|.. ..
T Consensus 22 ~L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~--e~~~~~~~---------------~s-- 82 (233)
T PF05496_consen 22 SLDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIAN--ELGVNFKI---------------TS-- 82 (233)
T ss_dssp SCCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHH--HCT--EEE---------------EE--
T ss_pred CHHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHh--ccCCCeEe---------------cc--
Confidence 45679999988888654444 3344577788999999999999999999 55555531 00
Q ss_pred ccCCCCHHHHHHHHHHHhcCCeEEEEecccCC-ChhhHHHHHhhC
Q 040913 242 VIIGEDYKLKKSILRDFLTNKKYFIALDDVCH-NIEIWDDLEEVL 285 (425)
Q Consensus 242 ~~~~~~~~~l~~~l~~~l~~kr~LlVLDdvw~-~~~~~~~l~~~l 285 (425)
........++...+.. + +++-+|.+|.+-. +...-+.+.++.
T Consensus 83 g~~i~k~~dl~~il~~-l-~~~~ILFIDEIHRlnk~~qe~Llpam 125 (233)
T PF05496_consen 83 GPAIEKAGDLAAILTN-L-KEGDILFIDEIHRLNKAQQEILLPAM 125 (233)
T ss_dssp CCC--SCHHHHHHHHT----TT-EEEECTCCC--HHHHHHHHHHH
T ss_pred chhhhhHHHHHHHHHh-c-CCCcEEEEechhhccHHHHHHHHHHh
Confidence 1111223455544443 3 3455788899941 334444444443
No 78
>PRK12377 putative replication protein; Provisional
Probab=97.15 E-value=0.00046 Score=64.44 Aligned_cols=100 Identities=14% Similarity=0.061 Sum_probs=50.9
Q ss_pred cEEEEEEecCCCchHHHHHHhhcCccccccccchHHH-HHHHHHHhCCCCCCCccCCCCHHHHHHHHHHHhcCCeEEEEe
Q 040913 190 LSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWI-LDDIIRSLMPPSRVTVIIGEDYKLKKSILRDFLTNKKYFIAL 268 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~~~~~~~~F~~~~wv-~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~kr~LlVL 268 (425)
...+.++|.+|+|||+||..+.+. .......++++ ..+++..+...... ..+...+. +.+ .+--||||
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~--l~~~g~~v~~i~~~~l~~~l~~~~~~----~~~~~~~l----~~l-~~~dLLiI 169 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNR--LLAKGRSVIVVTVPDVMSRLHESYDN----GQSGEKFL----QEL-CKVDLLVL 169 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHHcCCCeEEEEHHHHHHHHHHHHhc----cchHHHHH----HHh-cCCCEEEE
Confidence 456889999999999999999983 33222222333 33444433222110 01112222 222 35569999
Q ss_pred cccCC-ChhhHH--HHHhhCCCC-CCCcEEEEecCC
Q 040913 269 DDVCH-NIEIWD--DLEEVLPDN-QNGSRVLITVIN 300 (425)
Q Consensus 269 Ddvw~-~~~~~~--~l~~~l~~~-~~gskIivTTR~ 300 (425)
||+.. ....|. .+...+... .+.--+||||..
T Consensus 170 DDlg~~~~s~~~~~~l~~ii~~R~~~~~ptiitSNl 205 (248)
T PRK12377 170 DEIGIQRETKNEQVVLNQIIDRRTASMRSVGMLTNL 205 (248)
T ss_pred cCCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 99941 123342 333333221 112336777754
No 79
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.15 E-value=0.00099 Score=72.17 Aligned_cols=44 Identities=18% Similarity=0.079 Sum_probs=37.0
Q ss_pred CCcccchhhHHHHHHHHhcCCCCcEEEEEEecCCCchHHHHHHhhc
Q 040913 167 LDISEFERAREEWFDLLIEGPIGLSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 167 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
..++||+++++++++.|..... .-+.++|++|+|||++|+.+.+
T Consensus 182 ~~~igr~~ei~~~~~~L~~~~~--~n~lL~G~pG~GKT~l~~~la~ 225 (731)
T TIGR02639 182 DPLIGREDELERTIQVLCRRKK--NNPLLVGEPGVGKTAIAEGLAL 225 (731)
T ss_pred CcccCcHHHHHHHHHHHhcCCC--CceEEECCCCCCHHHHHHHHHH
Confidence 4689999999999998877642 2345899999999999998887
No 80
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.14 E-value=0.0028 Score=65.44 Aligned_cols=130 Identities=8% Similarity=0.028 Sum_probs=73.1
Q ss_pred CCcccchhhHHHHHHHHhcCCCCcEEEEEEecCCCchHHHHHHhhcCcccccccc---chHHHHHHHHHHhCCCCCCC--
Q 040913 167 LDISEFERAREEWFDLLIEGPIGLSVVAILDSSGFDKTAFAADTYNNNHVKFYFD---CLAWILDDIIRSLMPPSRVT-- 241 (425)
Q Consensus 167 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLa~~v~~~~~~~~~F~---~~~wv~~~il~~l~~~~~~~-- 241 (425)
.++||-+..++.|.+++..+. -...+-++|+.|+||||+|+.+.+.-.....+. |.. ......+.......
T Consensus 16 ~divGq~~v~~~L~~~~~~~~-l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~---C~~C~~i~~g~~~d~~ 91 (509)
T PRK14958 16 QEVIGQAPVVRALSNALDQQY-LHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCND---CENCREIDEGRFPDLF 91 (509)
T ss_pred HHhcCCHHHHHHHHHHHHhCC-CCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCC---CHHHHHHhcCCCceEE
Confidence 568999999999999997764 245677999999999999988776221111110 000 00011111110000
Q ss_pred --c-cCCCCHHHHHHHHHHH----hcCCeEEEEecccCC-ChhhHHHHHhhCCCCCCCcEEEEecCC
Q 040913 242 --V-IIGEDYKLKKSILRDF----LTNKKYFIALDDVCH-NIEIWDDLEEVLPDNQNGSRVLITVIN 300 (425)
Q Consensus 242 --~-~~~~~~~~l~~~l~~~----l~~kr~LlVLDdvw~-~~~~~~~l~~~l~~~~~gskIivTTR~ 300 (425)
+ ......+++.+.+... ..++.-++|+|++.. +....+.+...+..-...+++|++|.+
T Consensus 92 eidaas~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fIlattd 158 (509)
T PRK14958 92 EVDAASRTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILATTD 158 (509)
T ss_pred EEcccccCCHHHHHHHHHHHhhccccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEEEEECC
Confidence 0 0112333333222211 135667899999963 446777777777665556776655543
No 81
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=97.14 E-value=0.0017 Score=68.34 Aligned_cols=134 Identities=13% Similarity=0.058 Sum_probs=74.7
Q ss_pred CCCcccchhhHHHHHHHHhcCCCCcEEEEEEecCCCchHHHHHHhhcCcccccc---ccchHHHHHHHHHHhCCCCCCC-
Q 040913 166 RLDISEFERAREEWFDLLIEGPIGLSVVAILDSSGFDKTAFAADTYNNNHVKFY---FDCLAWILDDIIRSLMPPSRVT- 241 (425)
Q Consensus 166 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLa~~v~~~~~~~~~---F~~~~wv~~~il~~l~~~~~~~- 241 (425)
-.++||.+..+..|.+.+..+. -.+.+-++|..|+||||+|+.+.+.-..... ..|.. ....+.+.......
T Consensus 15 f~divGQe~vv~~L~~~l~~~r-l~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~---C~~C~~i~~g~~~D~ 90 (647)
T PRK07994 15 FAEVVGQEHVLTALANALDLGR-LHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGE---CDNCREIEQGRFVDL 90 (647)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCC---CHHHHHHHcCCCCCc
Confidence 3568999999999998887764 3455678999999999999988763211100 01100 01112221111000
Q ss_pred -ccC---CCCHHHHH---HHHHHH-hcCCeEEEEecccCC-ChhhHHHHHhhCCCCCCCcEEEEecCC-hhH
Q 040913 242 -VII---GEDYKLKK---SILRDF-LTNKKYFIALDDVCH-NIEIWDDLEEVLPDNQNGSRVLITVIN-PSL 303 (425)
Q Consensus 242 -~~~---~~~~~~l~---~~l~~~-l~~kr~LlVLDdvw~-~~~~~~~l~~~l~~~~~gskIivTTR~-~~v 303 (425)
..+ ....+++. ..+... ..+++-++|+|++.. +....+.+...+-.-....++|.+|.+ ..+
T Consensus 91 ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kL 162 (647)
T PRK07994 91 IEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKL 162 (647)
T ss_pred eeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCcccc
Confidence 000 12233332 222211 246777999999953 456777777777655556665554444 443
No 82
>PRK07261 topology modulation protein; Provisional
Probab=97.13 E-value=0.0007 Score=59.64 Aligned_cols=65 Identities=18% Similarity=0.192 Sum_probs=42.5
Q ss_pred EEEEEecCCCchHHHHHHhhcCcccc-ccccchHHHHHHHHHHhCCCCCCCccCCCCHHHHHHHHHHHhcCCeEEEEecc
Q 040913 192 VVAILDSSGFDKTAFAADTYNNNHVK-FYFDCLAWILDDIIRSLMPPSRVTVIIGEDYKLKKSILRDFLTNKKYFIALDD 270 (425)
Q Consensus 192 vi~IvG~gGvGKTtLa~~v~~~~~~~-~~F~~~~wv~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~kr~LlVLDd 270 (425)
-|.|+|++|+||||||+.+.....+. -+.|...|- . +....+.++....+.+.+.+.+ .|+|.
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~------------~--~~~~~~~~~~~~~~~~~~~~~~--wIidg 65 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQ------------P--NWQERDDDDMIADISNFLLKHD--WIIDG 65 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEec------------c--ccccCCHHHHHHHHHHHHhCCC--EEEcC
Confidence 47899999999999999987632221 123333330 0 1223455677888888887766 68888
Q ss_pred cC
Q 040913 271 VC 272 (425)
Q Consensus 271 vw 272 (425)
.-
T Consensus 66 ~~ 67 (171)
T PRK07261 66 NY 67 (171)
T ss_pred cc
Confidence 75
No 83
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.12 E-value=0.003 Score=69.33 Aligned_cols=117 Identities=14% Similarity=0.113 Sum_probs=65.5
Q ss_pred CCcccchhhHHHHHHHHhcC-------CCCcEEEEEEecCCCchHHHHHHhhcC----ccccccccchHHHHHHHHHHhC
Q 040913 167 LDISEFERAREEWFDLLIEG-------PIGLSVVAILDSSGFDKTAFAADTYNN----NHVKFYFDCLAWILDDIIRSLM 235 (425)
Q Consensus 167 ~~~vGr~~~~~~l~~~L~~~-------~~~~~vi~IvG~gGvGKTtLa~~v~~~----~~~~~~F~~~~wv~~~il~~l~ 235 (425)
..++|.+..++.+.+.+... .....++.++|+.|+|||.||+.+... ..---.|++.-|.-..-...+.
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~dmse~~~~~~~~~l~ 645 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYGGEQNLITINMSEFQEAHTVSRLK 645 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhCCCcceEEEeHHHhhhhhhhcccc
Confidence 46889999999998887532 234568899999999999999776542 1111123333332111111221
Q ss_pred CCCCCCccCCC-CHHHHHHHHHHHhcCCeEEEEecccCC-ChhhHHHHHhhCCCC
Q 040913 236 PPSRVTVIIGE-DYKLKKSILRDFLTNKKYFIALDDVCH-NIEIWDDLEEVLPDN 288 (425)
Q Consensus 236 ~~~~~~~~~~~-~~~~l~~~l~~~l~~kr~LlVLDdvw~-~~~~~~~l~~~l~~~ 288 (425)
.... +.... ....+...+++ ....+|+||++.. +.+.++.+...+..+
T Consensus 646 g~~~--gyvg~~~~g~L~~~v~~---~p~svvllDEieka~~~v~~~Llq~ld~g 695 (852)
T TIGR03345 646 GSPP--GYVGYGEGGVLTEAVRR---KPYSVVLLDEVEKAHPDVLELFYQVFDKG 695 (852)
T ss_pred CCCC--CcccccccchHHHHHHh---CCCcEEEEechhhcCHHHHHHHHHHhhcc
Confidence 1111 11111 11223333332 4556999999963 346677777666543
No 84
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.12 E-value=0.0032 Score=64.34 Aligned_cols=136 Identities=14% Similarity=0.058 Sum_probs=73.9
Q ss_pred CCCcccchhhHHHHHHHHhcCCCCcEEEEEEecCCCchHHHHHHhhcC------ccccccccchHHHHHHHHHHhCCCCC
Q 040913 166 RLDISEFERAREEWFDLLIEGPIGLSVVAILDSSGFDKTAFAADTYNN------NHVKFYFDCLAWILDDIIRSLMPPSR 239 (425)
Q Consensus 166 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLa~~v~~~------~~~~~~F~~~~wv~~~il~~l~~~~~ 239 (425)
-.+++|.+...+.|.+.+..+. -...+-+.|+.|+||||+|+.+.+. +....+=.|.... .|........-
T Consensus 12 f~dliGQe~vv~~L~~a~~~~r-i~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~--~i~~~~~~Dv~ 88 (491)
T PRK14964 12 FKDLVGQDVLVRILRNAFTLNK-IPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCI--SIKNSNHPDVI 88 (491)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHH--HHhccCCCCEE
Confidence 3568999998888888887654 2347889999999999999887651 1111111111111 11110000000
Q ss_pred C-CccCCCCHHHHHHHHHHH----hcCCeEEEEecccCC-ChhhHHHHHhhCCCCCCCcEEEEec-CChhHH
Q 040913 240 V-TVIIGEDYKLKKSILRDF----LTNKKYFIALDDVCH-NIEIWDDLEEVLPDNQNGSRVLITV-INPSLL 304 (425)
Q Consensus 240 ~-~~~~~~~~~~l~~~l~~~----l~~kr~LlVLDdvw~-~~~~~~~l~~~l~~~~~gskIivTT-R~~~va 304 (425)
. ........+++...+... +.++.-++|+|++.. +....+.+...+..-.+.+++|++| ....+.
T Consensus 89 eidaas~~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fIlatte~~Kl~ 160 (491)
T PRK14964 89 EIDAASNTSVDDIKVILENSCYLPISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFILATTEVKKIP 160 (491)
T ss_pred EEecccCCCHHHHHHHHHHHHhccccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEEEEeCChHHHH
Confidence 0 000112333333222221 235667899999952 4456777877777656667766555 444443
No 85
>PRK05642 DNA replication initiation factor; Validated
Probab=97.12 E-value=0.0011 Score=61.65 Aligned_cols=23 Identities=9% Similarity=0.183 Sum_probs=20.5
Q ss_pred cEEEEEEecCCCchHHHHHHhhc
Q 040913 190 LSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
...+.|+|..|+|||.|++.+.+
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~ 67 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACL 67 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 35678999999999999999987
No 86
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.09 E-value=0.0047 Score=65.09 Aligned_cols=130 Identities=10% Similarity=0.046 Sum_probs=72.1
Q ss_pred CCcccchhhHHHHHHHHhcCCCCcEEEEEEecCCCchHHHHHHhhcCccccc--------------cccchHHHHHHHHH
Q 040913 167 LDISEFERAREEWFDLLIEGPIGLSVVAILDSSGFDKTAFAADTYNNNHVKF--------------YFDCLAWILDDIIR 232 (425)
Q Consensus 167 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLa~~v~~~~~~~~--------------~F~~~~wv~~~il~ 232 (425)
.+++|.+..+..|.+.+..+. -...+-++|+.|+||||+|..+.+.-.... +=.|... +
T Consensus 16 ~eivGQe~i~~~L~~~i~~~r-i~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C~sC------~ 88 (620)
T PRK14954 16 ADITAQEHITHTIQNSLRMDR-VGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGECESC------R 88 (620)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-CCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccCHHH------H
Confidence 568899999999888887653 345578999999999999987765211111 0011111 1
Q ss_pred HhCCCCCCC-----ccCCCCHHHHHHHHHHH----hcCCeEEEEecccCC-ChhhHHHHHhhCCCCCCCcEEEEec-CCh
Q 040913 233 SLMPPSRVT-----VIIGEDYKLKKSILRDF----LTNKKYFIALDDVCH-NIEIWDDLEEVLPDNQNGSRVLITV-INP 301 (425)
Q Consensus 233 ~l~~~~~~~-----~~~~~~~~~l~~~l~~~----l~~kr~LlVLDdvw~-~~~~~~~l~~~l~~~~~gskIivTT-R~~ 301 (425)
.+....... .......+++...+... ..+++-++|+|++.. +....+.|...+..-...+.+|++| +..
T Consensus 89 ~~~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~~ 168 (620)
T PRK14954 89 DFDAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELH 168 (620)
T ss_pred HHhccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChh
Confidence 110000000 00112234444333222 235666899999862 3456777877776655556655444 433
Q ss_pred hH
Q 040913 302 SL 303 (425)
Q Consensus 302 ~v 303 (425)
.+
T Consensus 169 kL 170 (620)
T PRK14954 169 KI 170 (620)
T ss_pred hh
Confidence 33
No 87
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.09 E-value=0.0023 Score=61.16 Aligned_cols=45 Identities=9% Similarity=0.077 Sum_probs=29.4
Q ss_pred CcccchhhHHHHHHHHh---cC--------C--CCcEEEEEEecCCCchHHHHHHhhc
Q 040913 168 DISEFERAREEWFDLLI---EG--------P--IGLSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 168 ~~vGr~~~~~~l~~~L~---~~--------~--~~~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
.++|.+..+++|.++.. .. . ....-+.++|++|+||||+|+.+..
T Consensus 23 ~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~ 80 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAALLLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQ 80 (284)
T ss_pred hccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHH
Confidence 37887777777654322 11 0 1122577899999999999966654
No 88
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.08 E-value=0.0026 Score=63.22 Aligned_cols=119 Identities=10% Similarity=0.082 Sum_probs=68.3
Q ss_pred CCCcccchhhHHHHHHHHhcCCCCcEEEEEEecCCCchHHHHHHhhcCcccc------ccccchHHHHHHHHHHhCCCCC
Q 040913 166 RLDISEFERAREEWFDLLIEGPIGLSVVAILDSSGFDKTAFAADTYNNNHVK------FYFDCLAWILDDIIRSLMPPSR 239 (425)
Q Consensus 166 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLa~~v~~~~~~~------~~F~~~~wv~~~il~~l~~~~~ 239 (425)
-.+++|.+...+.+.+.+..+. -.+.+-++|+.|+||||+|+.+.+.-... ..|...+. .+ .
T Consensus 16 ~~~iig~~~~~~~l~~~i~~~~-~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~-------~l----~ 83 (367)
T PRK14970 16 FDDVVGQSHITNTLLNAIENNH-LAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIF-------EL----D 83 (367)
T ss_pred HHhcCCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceE-------Ee----c
Confidence 3567899999999999998753 34578899999999999999886621110 11111000 00 0
Q ss_pred CCccCCCCHHHHHHHHHHH----hcCCeEEEEecccCC-ChhhHHHHHhhCCCCCCCcEEEEec
Q 040913 240 VTVIIGEDYKLKKSILRDF----LTNKKYFIALDDVCH-NIEIWDDLEEVLPDNQNGSRVLITV 298 (425)
Q Consensus 240 ~~~~~~~~~~~l~~~l~~~----l~~kr~LlVLDdvw~-~~~~~~~l~~~l~~~~~gskIivTT 298 (425)
.....+.+++...+... ..+++-+|++|++.. +...++.+...+......+.+|++|
T Consensus 84 --~~~~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~ 145 (367)
T PRK14970 84 --AASNNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILAT 145 (367)
T ss_pred --cccCCCHHHHHHHHHHHhhccccCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEe
Confidence 00111223333222221 234566899999852 3345677766665444455555555
No 89
>PRK06620 hypothetical protein; Validated
Probab=97.08 E-value=0.0031 Score=57.66 Aligned_cols=51 Identities=16% Similarity=-0.116 Sum_probs=31.5
Q ss_pred CCCCCCcccchh--hHHHHHHHHhcCCCCc--EEEEEEecCCCchHHHHHHhhcC
Q 040913 163 GQPRLDISEFER--AREEWFDLLIEGPIGL--SVVAILDSSGFDKTAFAADTYNN 213 (425)
Q Consensus 163 ~~~~~~~vGr~~--~~~~l~~~L~~~~~~~--~vi~IvG~gGvGKTtLa~~v~~~ 213 (425)
+..++-++|-.+ ....+.++-.....+. +.+-|+|++|+|||+|++.+.+.
T Consensus 13 ~tfd~Fvvg~~N~~a~~~~~~~~~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~ 67 (214)
T PRK06620 13 YHPDEFIVSSSNDQAYNIIKNWQCGFGVNPYKFTLLIKGPSSSGKTYLTKIWQNL 67 (214)
T ss_pred CCchhhEecccHHHHHHHHHHHHHccccCCCcceEEEECCCCCCHHHHHHHHHhc
Confidence 344555667522 2333344432211112 56889999999999999998874
No 90
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.07 E-value=0.039 Score=59.03 Aligned_cols=115 Identities=19% Similarity=0.282 Sum_probs=74.3
Q ss_pred CcccchhhHHHHHHHHhcC-------CCCcEEEEEEecCCCchHHHHHHhh----cCccccccccchHHH-HHHHHHHhC
Q 040913 168 DISEFERAREEWFDLLIEG-------PIGLSVVAILDSSGFDKTAFAADTY----NNNHVKFYFDCLAWI-LDDIIRSLM 235 (425)
Q Consensus 168 ~~vGr~~~~~~l~~~L~~~-------~~~~~vi~IvG~gGvGKTtLa~~v~----~~~~~~~~F~~~~wv-~~~il~~l~ 235 (425)
.++|.+.....+.+.+... +...++...+|+.|||||.||+.+. .++.---.||..=+. -..+-+-++
T Consensus 492 rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~EkHsVSrLIG 571 (786)
T COG0542 492 RVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYMEKHSVSRLIG 571 (786)
T ss_pred ceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeechHHHHHHHHHHHHhC
Confidence 4899999999998887643 3456788889999999999887754 433333346665555 333334444
Q ss_pred CCCCCCccCCCCHHHHHHHHHHHhcCCeE-EEEecccCC-ChhhHHHHHhhCCCC
Q 040913 236 PPSRVTVIIGEDYKLKKSILRDFLTNKKY-FIALDDVCH-NIEIWDDLEEVLPDN 288 (425)
Q Consensus 236 ~~~~~~~~~~~~~~~l~~~l~~~l~~kr~-LlVLDdvw~-~~~~~~~l~~~l~~~ 288 (425)
.+.+ ....+. -..|-+.++.|.| +|.||.|.- .++..+-+...|.++
T Consensus 572 aPPG---YVGyee---GG~LTEaVRr~PySViLlDEIEKAHpdV~nilLQVlDdG 620 (786)
T COG0542 572 APPG---YVGYEE---GGQLTEAVRRKPYSVILLDEIEKAHPDVFNLLLQVLDDG 620 (786)
T ss_pred CCCC---Cceecc---ccchhHhhhcCCCeEEEechhhhcCHHHHHHHHHHhcCC
Confidence 4433 111111 2245556667877 888999962 346777788887654
No 91
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=97.07 E-value=0.005 Score=60.93 Aligned_cols=134 Identities=14% Similarity=-0.006 Sum_probs=75.9
Q ss_pred CCCCcccchhhHHHHHHHHhcCCCCcEEEEEEecCCCchHHHHHHhhcCccccc----c-c-----------cchHHHHH
Q 040913 165 PRLDISEFERAREEWFDLLIEGPIGLSVVAILDSSGFDKTAFAADTYNNNHVKF----Y-F-----------DCLAWILD 228 (425)
Q Consensus 165 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLa~~v~~~~~~~~----~-F-----------~~~~wv~~ 228 (425)
...+++|.+..++.+.+.+..+. -...+-++|+.|+||+|+|..+.+.--... . + .|... +
T Consensus 17 ~~~~iiGq~~~~~~L~~~~~~~r-l~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~~c--~ 93 (365)
T PRK07471 17 ETTALFGHAAAEAALLDAYRSGR-LHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDHPVA--R 93 (365)
T ss_pred chhhccChHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCChHH--H
Confidence 34678999999999999888764 345688999999999999966544210000 0 0 11111 0
Q ss_pred HHHHHh-------CCCCCCCc---cCCCCHHHHHHHHHHHhc-----CCeEEEEecccCC-ChhhHHHHHhhCCCCCCCc
Q 040913 229 DIIRSL-------MPPSRVTV---IIGEDYKLKKSILRDFLT-----NKKYFIALDDVCH-NIEIWDDLEEVLPDNQNGS 292 (425)
Q Consensus 229 ~il~~l-------~~~~~~~~---~~~~~~~~l~~~l~~~l~-----~kr~LlVLDdvw~-~~~~~~~l~~~l~~~~~gs 292 (425)
.|...- ........ ......++ ...+.+.+. +++.++|+||+.. +....+.+...+..-..++
T Consensus 94 ~i~~~~HPDl~~i~~~~~~~~~~~~~~I~Vdq-iR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEepp~~~ 172 (365)
T PRK07471 94 RIAAGAHGGLLTLERSWNEKGKRLRTVITVDE-VRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPPARS 172 (365)
T ss_pred HHHccCCCCeEEEecccccccccccccccHHH-HHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcCCCCe
Confidence 010000 00000000 01123344 233444432 5667999999963 5577777777776655567
Q ss_pred EEEEecCChh
Q 040913 293 RVLITVINPS 302 (425)
Q Consensus 293 kIivTTR~~~ 302 (425)
.+|++|.+.+
T Consensus 173 ~~IL~t~~~~ 182 (365)
T PRK07471 173 LFLLVSHAPA 182 (365)
T ss_pred EEEEEECCch
Confidence 7777776654
No 92
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.06 E-value=0.0045 Score=67.11 Aligned_cols=113 Identities=15% Similarity=0.231 Sum_probs=64.6
Q ss_pred CCcccchhhHHHHHHHHhcC-------CCCcEEEEEEecCCCchHHHHHHhhcCcccccc---ccchHHHH-HHHHHHhC
Q 040913 167 LDISEFERAREEWFDLLIEG-------PIGLSVVAILDSSGFDKTAFAADTYNNNHVKFY---FDCLAWIL-DDIIRSLM 235 (425)
Q Consensus 167 ~~~vGr~~~~~~l~~~L~~~-------~~~~~vi~IvG~gGvGKTtLa~~v~~~~~~~~~---F~~~~wv~-~~il~~l~ 235 (425)
..++|.+..++.|.+.+... .....++.++|+.|+|||+||+.+... .... |++.-+.- ..+-+-++
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~--l~~~~~~~d~se~~~~~~~~~lig 531 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEA--LGVHLERFDMSEYMEKHTVSRLIG 531 (731)
T ss_pred cceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHH--hcCCeEEEeCchhhhcccHHHHhc
Confidence 45788888888888877642 223567889999999999999999873 2221 23322321 11222222
Q ss_pred CCCCCCccCCCCHHHHHHHHHHHhcC-CeEEEEecccCC-ChhhHHHHHhhCCC
Q 040913 236 PPSRVTVIIGEDYKLKKSILRDFLTN-KKYFIALDDVCH-NIEIWDDLEEVLPD 287 (425)
Q Consensus 236 ~~~~~~~~~~~~~~~l~~~l~~~l~~-kr~LlVLDdvw~-~~~~~~~l~~~l~~ 287 (425)
.+.. ....+.. ..+.+.++. ...+|+||++.. +.+.++.+...+..
T Consensus 532 ~~~g---yvg~~~~---~~l~~~~~~~p~~VvllDEieka~~~~~~~Ll~~ld~ 579 (731)
T TIGR02639 532 APPG---YVGFEQG---GLLTEAVRKHPHCVLLLDEIEKAHPDIYNILLQVMDY 579 (731)
T ss_pred CCCC---Ccccchh---hHHHHHHHhCCCeEEEEechhhcCHHHHHHHHHhhcc
Confidence 2221 1111111 123333333 345999999963 34667777766653
No 93
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.04 E-value=0.00045 Score=63.81 Aligned_cols=34 Identities=24% Similarity=0.288 Sum_probs=26.1
Q ss_pred EEEEEEecCCCchHHHHHHhhcCccccccccchHHH
Q 040913 191 SVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWI 226 (425)
Q Consensus 191 ~vi~IvG~gGvGKTtLa~~v~~~~~~~~~F~~~~wv 226 (425)
--++|+|..|+|||||...+.. .....|+.+.++
T Consensus 14 fr~viIG~sGSGKT~li~~lL~--~~~~~f~~I~l~ 47 (241)
T PF04665_consen 14 FRMVIIGKSGSGKTTLIKSLLY--YLRHKFDHIFLI 47 (241)
T ss_pred ceEEEECCCCCCHHHHHHHHHH--hhcccCCEEEEE
Confidence 3577999999999999998887 466667555444
No 94
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=97.03 E-value=0.0015 Score=60.02 Aligned_cols=47 Identities=13% Similarity=0.002 Sum_probs=30.3
Q ss_pred CCCcccchhh-HHHHHHHHhcC-CCCcEEEEEEecCCCchHHHHHHhhc
Q 040913 166 RLDISEFERA-REEWFDLLIEG-PIGLSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 166 ~~~~vGr~~~-~~~l~~~L~~~-~~~~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
++-++|-.+. .-.....+... ......+-|+|..|+|||.|.+++++
T Consensus 8 dnfv~g~~N~~a~~~~~~ia~~~~~~~~~l~l~G~~G~GKTHLL~Ai~~ 56 (219)
T PF00308_consen 8 DNFVVGESNELAYAAAKAIAENPGERYNPLFLYGPSGLGKTHLLQAIAN 56 (219)
T ss_dssp CCS--TTTTHHHHHHHHHHHHSTTTSSSEEEEEESTTSSHHHHHHHHHH
T ss_pred ccCCcCCcHHHHHHHHHHHHhcCCCCCCceEEECCCCCCHHHHHHHHHH
Confidence 4445674333 33444445443 33455678999999999999999998
No 95
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.01 E-value=0.00052 Score=56.40 Aligned_cols=22 Identities=23% Similarity=0.336 Sum_probs=20.2
Q ss_pred EEEEEecCCCchHHHHHHhhcC
Q 040913 192 VVAILDSSGFDKTAFAADTYNN 213 (425)
Q Consensus 192 vi~IvG~gGvGKTtLa~~v~~~ 213 (425)
||.|.|++|+||||+|+.+.+.
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999883
No 96
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.95 E-value=0.0037 Score=62.66 Aligned_cols=94 Identities=26% Similarity=0.293 Sum_probs=60.4
Q ss_pred EEEEEecCCCchHHHHHHhhcCccccccccchHHHHHHHHHHhCCCCCCCccCCCCHHHHHHHHHHHh---cCCeEEEEe
Q 040913 192 VVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWILDDIIRSLMPPSRVTVIIGEDYKLKKSILRDFL---TNKKYFIAL 268 (425)
Q Consensus 192 vi~IvG~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~l---~~kr~LlVL 268 (425)
++.|.|+-++|||||++.+... ..+. .+++ .. .....+...+.+.+..+. ..++.+|+|
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~--~~~~---~iy~----------~~---~d~~~~~~~l~d~~~~~~~~~~~~~~yifL 100 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKG--LLEE---IIYI----------NF---DDLRLDRIELLDLLRAYIELKEREKSYIFL 100 (398)
T ss_pred EEEEECCccccHHHHHHHHHhh--CCcc---eEEE----------Ee---cchhcchhhHHHHHHHHHHhhccCCceEEE
Confidence 9999999999999999776662 2221 0000 00 000112222222233222 237789999
Q ss_pred cccCCChhhHHHHHhhCCCCCCCcEEEEecCChhHHH
Q 040913 269 DDVCHNIEIWDDLEEVLPDNQNGSRVLITVINPSLLT 305 (425)
Q Consensus 269 Ddvw~~~~~~~~l~~~l~~~~~gskIivTTR~~~va~ 305 (425)
|.|. ....|......+.+.++. +|++|+-+.....
T Consensus 101 DEIq-~v~~W~~~lk~l~d~~~~-~v~itgsss~ll~ 135 (398)
T COG1373 101 DEIQ-NVPDWERALKYLYDRGNL-DVLITGSSSSLLS 135 (398)
T ss_pred eccc-CchhHHHHHHHHHccccc-eEEEECCchhhhc
Confidence 9999 999999988888887766 8999988766543
No 97
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=96.92 E-value=0.0062 Score=54.35 Aligned_cols=123 Identities=11% Similarity=0.032 Sum_probs=61.6
Q ss_pred HHHHHHhcCCCCcEEEEEEecCCCchHHHHHHhhcCcccccc---ccchHHHHHHHHHHhCCC-CC--CCccCCCCHHHH
Q 040913 178 EWFDLLIEGPIGLSVVAILDSSGFDKTAFAADTYNNNHVKFY---FDCLAWILDDIIRSLMPP-SR--VTVIIGEDYKLK 251 (425)
Q Consensus 178 ~l~~~L~~~~~~~~vi~IvG~gGvGKTtLa~~v~~~~~~~~~---F~~~~wv~~~il~~l~~~-~~--~~~~~~~~~~~l 251 (425)
.+.+.+..+. -...+.++|+.|+||||+|..+.+.-.-... -.|........+..-..+ .. .........+++
T Consensus 3 ~l~~~i~~~~-~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~~~~~~~~i 81 (188)
T TIGR00678 3 QLKRALEKGR-LAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEGQSIKVDQV 81 (188)
T ss_pred HHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEeccccCcCCHHHH
Confidence 3455555443 3467889999999999999887652111100 011110000000000000 00 000011233444
Q ss_pred HHHHHHH----hcCCeEEEEecccCC-ChhhHHHHHhhCCCCCCCcEEEEecCCh
Q 040913 252 KSILRDF----LTNKKYFIALDDVCH-NIEIWDDLEEVLPDNQNGSRVLITVINP 301 (425)
Q Consensus 252 ~~~l~~~----l~~kr~LlVLDdvw~-~~~~~~~l~~~l~~~~~gskIivTTR~~ 301 (425)
...+... ..+.+-++|+|++.. +....+.+...+......+.+|++|++.
T Consensus 82 ~~i~~~~~~~~~~~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~ 136 (188)
T TIGR00678 82 RELVEFLSRTPQESGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSP 136 (188)
T ss_pred HHHHHHHccCcccCCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECCh
Confidence 3222222 135667899999852 3456777888877655567777777653
No 98
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.91 E-value=0.0008 Score=65.63 Aligned_cols=48 Identities=15% Similarity=0.158 Sum_probs=40.9
Q ss_pred CCCcccchhhHHHHHHHHhcC----CCCcEEEEEEecCCCchHHHHHHhhcC
Q 040913 166 RLDISEFERAREEWFDLLIEG----PIGLSVVAILDSSGFDKTAFAADTYNN 213 (425)
Q Consensus 166 ~~~~vGr~~~~~~l~~~L~~~----~~~~~vi~IvG~gGvGKTtLa~~v~~~ 213 (425)
..+++|.++.++++++++... ....+++.++|++|+||||||+.+.+.
T Consensus 50 ~~~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~ 101 (361)
T smart00763 50 DHDFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRG 101 (361)
T ss_pred chhccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 337999999999999999763 235689999999999999999998773
No 99
>PRK09183 transposase/IS protein; Provisional
Probab=96.90 E-value=0.00052 Score=64.67 Aligned_cols=22 Identities=27% Similarity=0.289 Sum_probs=19.4
Q ss_pred EEEEEEecCCCchHHHHHHhhc
Q 040913 191 SVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 191 ~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
..+.|+|++|+|||+||..+.+
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~ 124 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGY 124 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHH
Confidence 4577999999999999999866
No 100
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=96.90 E-value=0.0046 Score=67.27 Aligned_cols=133 Identities=13% Similarity=0.081 Sum_probs=74.7
Q ss_pred CCcccchhhHHHHHHHHhcCCCCcEEEEEEecCCCchHHHHHHhhcCcccccc--c-cchHHHHHHHHHHhCCC--CCCC
Q 040913 167 LDISEFERAREEWFDLLIEGPIGLSVVAILDSSGFDKTAFAADTYNNNHVKFY--F-DCLAWILDDIIRSLMPP--SRVT 241 (425)
Q Consensus 167 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLa~~v~~~~~~~~~--F-~~~~wv~~~il~~l~~~--~~~~ 241 (425)
.+++|.+..++.|.+++..+. -.+.+.++|..|+||||+|+.+.+.-..... . .|..- .-.+.+... ....
T Consensus 15 ~eiiGqe~v~~~L~~~i~~~r-i~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C---~sC~~~~~g~~~~~d 90 (824)
T PRK07764 15 AEVIGQEHVTEPLSTALDSGR-INHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGEC---DSCVALAPGGPGSLD 90 (824)
T ss_pred HHhcCcHHHHHHHHHHHHhCC-CCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCccc---HHHHHHHcCCCCCCc
Confidence 468999999999999988764 2356789999999999999888653211111 0 11000 000011000 0000
Q ss_pred --cc---CCCCHHHHHHHHHHH-----hcCCeEEEEecccCC-ChhhHHHHHhhCCCCCCCcEEEEec-CChhHH
Q 040913 242 --VI---IGEDYKLKKSILRDF-----LTNKKYFIALDDVCH-NIEIWDDLEEVLPDNQNGSRVLITV-INPSLL 304 (425)
Q Consensus 242 --~~---~~~~~~~l~~~l~~~-----l~~kr~LlVLDdvw~-~~~~~~~l~~~l~~~~~gskIivTT-R~~~va 304 (425)
.. .....+++.+ +.+. ..++.-++|||++.. +...++.|...+..-...+.+|++| ....+.
T Consensus 91 v~eidaas~~~Vd~iR~-l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt~~~kLl 164 (824)
T PRK07764 91 VTEIDAASHGGVDDARE-LRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTEPDKVI 164 (824)
T ss_pred EEEecccccCCHHHHHH-HHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhh
Confidence 00 1122333332 2222 235666899999963 4577788888887665566655554 444443
No 101
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=96.88 E-value=0.00012 Score=66.12 Aligned_cols=38 Identities=18% Similarity=0.140 Sum_probs=25.1
Q ss_pred cchhhHHHHHHHHhcCCCCcEEEEEEecCCCchHHHHHHhhc
Q 040913 171 EFERAREEWFDLLIEGPIGLSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 171 Gr~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
.+..+-...++.|.. ..++.+.|++|.|||.||....-
T Consensus 4 p~~~~Q~~~~~al~~----~~~v~~~G~AGTGKT~LA~a~Al 41 (205)
T PF02562_consen 4 PKNEEQKFALDALLN----NDLVIVNGPAGTGKTFLALAAAL 41 (205)
T ss_dssp --SHHHHHHHHHHHH-----SEEEEE--TTSSTTHHHHHHHH
T ss_pred CCCHHHHHHHHHHHh----CCeEEEECCCCCcHHHHHHHHHH
Confidence 344555666777773 55888999999999999976554
No 102
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.86 E-value=0.0079 Score=63.47 Aligned_cols=130 Identities=12% Similarity=0.080 Sum_probs=73.1
Q ss_pred CCCcccchhhHHHHHHHHhcCCCCcEEEEEEecCCCchHHHHHHhhcCccccc---ccc-chHHHHHHHHHHhCCCCCCC
Q 040913 166 RLDISEFERAREEWFDLLIEGPIGLSVVAILDSSGFDKTAFAADTYNNNHVKF---YFD-CLAWILDDIIRSLMPPSRVT 241 (425)
Q Consensus 166 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLa~~v~~~~~~~~---~F~-~~~wv~~~il~~l~~~~~~~ 241 (425)
-.+++|.+..++.|.+++..+. -.+.+-++|+.|+||||+|+.+.+.-.... .+. |. ..+..+.+.......
T Consensus 15 ~~eiiGq~~~~~~L~~~i~~~~-i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~---~c~~c~~i~~~~~~d 90 (585)
T PRK14950 15 FAELVGQEHVVQTLRNAIAEGR-VAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCG---TCEMCRAIAEGSAVD 90 (585)
T ss_pred HHHhcCCHHHHHHHHHHHHhCC-CceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCc---cCHHHHHHhcCCCCe
Confidence 3578999999999988887654 345667899999999999998876321111 111 10 011122222111100
Q ss_pred ----cc-CCCCHHHHHHHHHHHh-----cCCeEEEEecccCC-ChhhHHHHHhhCCCCCCCcEEEEecCC
Q 040913 242 ----VI-IGEDYKLKKSILRDFL-----TNKKYFIALDDVCH-NIEIWDDLEEVLPDNQNGSRVLITVIN 300 (425)
Q Consensus 242 ----~~-~~~~~~~l~~~l~~~l-----~~kr~LlVLDdvw~-~~~~~~~l~~~l~~~~~gskIivTTR~ 300 (425)
+. .....+++.+ +.+.+ .+++-++|+|++.. +.+..+.|...+......+.+|++|.+
T Consensus 91 ~~~i~~~~~~~vd~ir~-ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~ 159 (585)
T PRK14950 91 VIEMDAASHTSVDDARE-IIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTE 159 (585)
T ss_pred EEEEeccccCCHHHHHH-HHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCC
Confidence 00 1122333322 22222 25677899999852 345677777776655556666666543
No 103
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=96.86 E-value=0.0019 Score=54.66 Aligned_cols=108 Identities=15% Similarity=0.043 Sum_probs=61.4
Q ss_pred ccchhhHHHHHHHHhcCCCCcEEEEEEecCCCchHHHHHHhhcCccc-cccccchHHHHHHHHHHhCCCCCCCccCCCCH
Q 040913 170 SEFERAREEWFDLLIEGPIGLSVVAILDSSGFDKTAFAADTYNNNHV-KFYFDCLAWILDDIIRSLMPPSRVTVIIGEDY 248 (425)
Q Consensus 170 vGr~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLa~~v~~~~~~-~~~F~~~~wv~~~il~~l~~~~~~~~~~~~~~ 248 (425)
||.-..++++.+.+..-......|.|.|..|+||+++|+.++..... ...|...- ....+
T Consensus 1 vG~S~~~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~------------------~~~~~- 61 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAKSSSPVLITGEPGTGKSLLARALHRYSGRANGPFIVID------------------CASLP- 61 (138)
T ss_dssp --SCHHHHHHHHHHHHHHCSSS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCC------------------HHCTC-
T ss_pred CCCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEec------------------hhhCc-
Confidence 46666677777766653223455789999999999999999985332 22332210 01112
Q ss_pred HHHHHHHHHHhcCCeEEEEecccCC-ChhhHHHHHhhCCC-CCCCcEEEEecCChh
Q 040913 249 KLKKSILRDFLTNKKYFIALDDVCH-NIEIWDDLEEVLPD-NQNGSRVLITVINPS 302 (425)
Q Consensus 249 ~~l~~~l~~~l~~kr~LlVLDdvw~-~~~~~~~l~~~l~~-~~~gskIivTTR~~~ 302 (425)
.+.+.. -+.--|+|+|+.. +.+....+...+.. .....|+|.||...-
T Consensus 62 ---~~~l~~---a~~gtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~RlI~ss~~~l 111 (138)
T PF14532_consen 62 ---AELLEQ---AKGGTLYLKNIDRLSPEAQRRLLDLLKRQERSNVRLIASSSQDL 111 (138)
T ss_dssp ---HHHHHH---CTTSEEEEECGCCS-HHHHHHHHHHHHHCTTTTSEEEEEECC-C
T ss_pred ---HHHHHH---cCCCEEEECChHHCCHHHHHHHHHHHHhcCCCCeEEEEEeCCCH
Confidence 111111 2555678999963 34555556555542 255789999987643
No 104
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=96.84 E-value=0.0018 Score=65.76 Aligned_cols=48 Identities=10% Similarity=-0.030 Sum_probs=30.5
Q ss_pred CCCCcccchhhH--HHHHHHHhcCCCCcEEEEEEecCCCchHHHHHHhhcC
Q 040913 165 PRLDISEFERAR--EEWFDLLIEGPIGLSVVAILDSSGFDKTAFAADTYNN 213 (425)
Q Consensus 165 ~~~~~vGr~~~~--~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLa~~v~~~ 213 (425)
.++.++|-.... ....+....+. ...-+-|+|.+|+|||+|++.+.+.
T Consensus 104 FdnFv~g~~n~~a~~~~~~~~~~~~-~~n~l~lyG~~G~GKTHLl~ai~~~ 153 (440)
T PRK14088 104 FENFVVGPGNSFAYHAALEVAKNPG-RYNPLFIYGGVGLGKTHLLQSIGNY 153 (440)
T ss_pred ccccccCCchHHHHHHHHHHHhCcC-CCCeEEEEcCCCCcHHHHHHHHHHH
Confidence 344455744432 23333333222 2445889999999999999999983
No 105
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=96.84 E-value=0.0071 Score=59.51 Aligned_cols=49 Identities=16% Similarity=0.075 Sum_probs=40.0
Q ss_pred CCCCCCcccchhhHHHHHHHHhcCCCCcEEEEEEecCCCchHHHHHHhhc
Q 040913 163 GQPRLDISEFERAREEWFDLLIEGPIGLSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 163 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
+.....++|.+...+.+...+..+. -...+-|.|+.|+||||+|..+.+
T Consensus 19 P~~~~~l~Gh~~a~~~L~~a~~~gr-l~ha~L~~G~~G~GKttlA~~lA~ 67 (351)
T PRK09112 19 PSENTRLFGHEEAEAFLAQAYREGK-LHHALLFEGPEGIGKATLAFHLAN 67 (351)
T ss_pred CCchhhccCcHHHHHHHHHHHHcCC-CCeeEeeECCCCCCHHHHHHHHHH
Confidence 3445678999999999999998764 345688999999999999987655
No 106
>PRK06696 uridine kinase; Validated
Probab=96.83 E-value=0.0015 Score=60.10 Aligned_cols=41 Identities=20% Similarity=0.108 Sum_probs=33.9
Q ss_pred chhhHHHHHHHHhc-CCCCcEEEEEEecCCCchHHHHHHhhc
Q 040913 172 FERAREEWFDLLIE-GPIGLSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 172 r~~~~~~l~~~L~~-~~~~~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
|..-.++|.+.+.. ......+|+|.|.+|+||||||+.+.+
T Consensus 3 ~~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~ 44 (223)
T PRK06696 3 RKQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAE 44 (223)
T ss_pred HHHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHH
Confidence 56667788887765 344688999999999999999999887
No 107
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=96.82 E-value=0.00023 Score=63.12 Aligned_cols=71 Identities=18% Similarity=0.268 Sum_probs=40.2
Q ss_pred cEEEEEEecCCCchHHHHHHhhcCccccccccchHHH-HHHHHHHhCCCCCCCccCCCCHHHHHHHHHHHhcCCeEEEEe
Q 040913 190 LSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWI-LDDIIRSLMPPSRVTVIIGEDYKLKKSILRDFLTNKKYFIAL 268 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~~~~~~~~F~~~~wv-~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~kr~LlVL 268 (425)
..-+.++|..|+|||.||..+.+.. +...+. +.++ ..+++..+..... .......... +. +-=||||
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~-~~~g~~-v~f~~~~~L~~~l~~~~~-----~~~~~~~~~~----l~-~~dlLil 114 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEA-IRKGYS-VLFITASDLLDELKQSRS-----DGSYEELLKR----LK-RVDLLIL 114 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHH-HHTT---EEEEEHHHHHHHHHCCHC-----CTTHCHHHHH----HH-TSSCEEE
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHh-ccCCcc-eeEeecCceecccccccc-----ccchhhhcCc----cc-cccEecc
Confidence 3458899999999999999988732 112222 1223 5666666654322 1122232222 22 3357889
Q ss_pred cccC
Q 040913 269 DDVC 272 (425)
Q Consensus 269 Ddvw 272 (425)
||+.
T Consensus 115 DDlG 118 (178)
T PF01695_consen 115 DDLG 118 (178)
T ss_dssp ETCT
T ss_pred cccc
Confidence 9996
No 108
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=96.81 E-value=0.0066 Score=61.91 Aligned_cols=46 Identities=13% Similarity=-0.073 Sum_probs=37.8
Q ss_pred CCCcccchhhHHHHHHHHhcCCCCcEEEEEEecCCCchHHHHHHhhc
Q 040913 166 RLDISEFERAREEWFDLLIEGPIGLSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 166 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
-.+++|.+..+..+.+++..+. -...+-++|+.|+||||+|+.+.+
T Consensus 16 ~~diiGq~~~v~~L~~~i~~~~-i~ha~Lf~Gp~G~GKtt~A~~lAk 61 (451)
T PRK06305 16 FSEILGQDAVVAVLKNALRFNR-AAHAYLFSGIRGTGKTTLARIFAK 61 (451)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC-CceEEEEEcCCCCCHHHHHHHHHH
Confidence 3578999999999999987654 245677899999999999988765
No 109
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=96.80 E-value=0.0023 Score=65.64 Aligned_cols=51 Identities=20% Similarity=0.096 Sum_probs=38.7
Q ss_pred CCCCCCcccchhhHHHHHHHHhcC-----------CCCcEEEEEEecCCCchHHHHHHhhcC
Q 040913 163 GQPRLDISEFERAREEWFDLLIEG-----------PIGLSVVAILDSSGFDKTAFAADTYNN 213 (425)
Q Consensus 163 ~~~~~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~IvG~gGvGKTtLa~~v~~~ 213 (425)
...-.++.|.+..+++|.+.+..+ -...+-+.++|++|+|||++|+.+++.
T Consensus 178 ~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~e 239 (512)
T TIGR03689 178 DVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANS 239 (512)
T ss_pred CCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHh
Confidence 344456788999999988876421 123456889999999999999999983
No 110
>PRK10865 protein disaggregation chaperone; Provisional
Probab=96.80 E-value=0.012 Score=64.73 Aligned_cols=116 Identities=16% Similarity=0.157 Sum_probs=64.2
Q ss_pred CCcccchhhHHHHHHHHhcC-------CCCcEEEEEEecCCCchHHHHHHhhcCcc-ccc---cccchHHHHHHHHHHhC
Q 040913 167 LDISEFERAREEWFDLLIEG-------PIGLSVVAILDSSGFDKTAFAADTYNNNH-VKF---YFDCLAWILDDIIRSLM 235 (425)
Q Consensus 167 ~~~vGr~~~~~~l~~~L~~~-------~~~~~vi~IvG~gGvGKTtLa~~v~~~~~-~~~---~F~~~~wv~~~il~~l~ 235 (425)
..++|.+..++.+...+... +....++.++|+.|+|||+||+.+.+.-- -.. .|++.-+.-......+.
T Consensus 568 ~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~id~se~~~~~~~~~Li 647 (857)
T PRK10865 568 HRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFDSDDAMVRIDMSEFMEKHSVSRLV 647 (857)
T ss_pred CeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhhcCCCcEEEEEhHHhhhhhhHHHHh
Confidence 45889999988888877642 22345788999999999999999886211 011 12333232111222232
Q ss_pred CCCCCCccCCCCHHHHHHHHHHHhcC-CeEEEEecccCC-ChhhHHHHHhhCCC
Q 040913 236 PPSRVTVIIGEDYKLKKSILRDFLTN-KKYFIALDDVCH-NIEIWDDLEEVLPD 287 (425)
Q Consensus 236 ~~~~~~~~~~~~~~~l~~~l~~~l~~-kr~LlVLDdvw~-~~~~~~~l~~~l~~ 287 (425)
.... +....+.. ..+.+.++. ..-+|+|||+.. +...++.+...+..
T Consensus 648 G~~p--gy~g~~~~---g~l~~~v~~~p~~vLllDEieka~~~v~~~Ll~ile~ 696 (857)
T PRK10865 648 GAPP--GYVGYEEG---GYLTEAVRRRPYSVILLDEVEKAHPDVFNILLQVLDD 696 (857)
T ss_pred CCCC--cccccchh---HHHHHHHHhCCCCeEEEeehhhCCHHHHHHHHHHHhh
Confidence 2211 11111111 123333332 335999999963 34677777666643
No 111
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=96.79 E-value=0.0031 Score=69.46 Aligned_cols=44 Identities=11% Similarity=0.078 Sum_probs=36.8
Q ss_pred CCcccchhhHHHHHHHHhcCCCCcEEEEEEecCCCchHHHHHHhhc
Q 040913 167 LDISEFERAREEWFDLLIEGPIGLSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 167 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
..++||+.++.++++.|.....+ -+.++|++|+|||++|..+..
T Consensus 173 ~~~igr~~ei~~~~~~l~r~~~~--n~lL~G~pGvGKT~l~~~la~ 216 (852)
T TIGR03346 173 DPVIGRDEEIRRTIQVLSRRTKN--NPVLIGEPGVGKTAIVEGLAQ 216 (852)
T ss_pred CcCCCcHHHHHHHHHHHhcCCCC--ceEEEcCCCCCHHHHHHHHHH
Confidence 45899999999999999876533 334799999999999998877
No 112
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=96.79 E-value=0.01 Score=61.40 Aligned_cols=98 Identities=15% Similarity=0.194 Sum_probs=55.6
Q ss_pred CCCCCCCcccchhhHHHHHHHHh---cC-------CCCcEEEEEEecCCCchHHHHHHhhcCccccccccchHHHHHHHH
Q 040913 162 EGQPRLDISEFERAREEWFDLLI---EG-------PIGLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWILDDII 231 (425)
Q Consensus 162 ~~~~~~~~vGr~~~~~~l~~~L~---~~-------~~~~~vi~IvG~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~~il 231 (425)
+...-.+++|.+..++++.+++. .. ....+-+.++|++|+|||+||+.+.+. ..-.|-..- ..++.
T Consensus 50 ~~~~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~--~~~~~~~i~--~~~~~ 125 (495)
T TIGR01241 50 PKVTFKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGE--AGVPFFSIS--GSDFV 125 (495)
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHH--cCCCeeecc--HHHHH
Confidence 34445678898877766655433 21 122345778999999999999999883 333331100 01111
Q ss_pred HHhCCCCCCCccCCCCHHHHHHHHHHHhcCCeEEEEecccC
Q 040913 232 RSLMPPSRVTVIIGEDYKLKKSILRDFLTNKKYFIALDDVC 272 (425)
Q Consensus 232 ~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~kr~LlVLDdvw 272 (425)
.... ......+...+........++|++||+.
T Consensus 126 ~~~~---------g~~~~~l~~~f~~a~~~~p~Il~iDEid 157 (495)
T TIGR01241 126 EMFV---------GVGASRVRDLFEQAKKNAPCIIFIDEID 157 (495)
T ss_pred HHHh---------cccHHHHHHHHHHHHhcCCCEEEEechh
Confidence 1110 1122333444444445567899999994
No 113
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=96.79 E-value=0.0018 Score=67.50 Aligned_cols=23 Identities=22% Similarity=0.219 Sum_probs=20.7
Q ss_pred cEEEEEEecCCCchHHHHHHhhc
Q 040913 190 LSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
...+.|+|..|+|||.|++.+.+
T Consensus 314 ~NpL~LyG~sGsGKTHLL~AIa~ 336 (617)
T PRK14086 314 YNPLFIYGESGLGKTHLLHAIGH 336 (617)
T ss_pred CCcEEEECCCCCCHHHHHHHHHH
Confidence 34588999999999999999998
No 114
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=96.78 E-value=0.0019 Score=60.83 Aligned_cols=80 Identities=9% Similarity=0.230 Sum_probs=49.6
Q ss_pred EEEEEEecCCCchHHHHHHhhcCccccccccchH-HH--------HHHHHHHhCCCCCCC-------ccCCCCH-----H
Q 040913 191 SVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLA-WI--------LDDIIRSLMPPSRVT-------VIIGEDY-----K 249 (425)
Q Consensus 191 ~vi~IvG~gGvGKTtLa~~v~~~~~~~~~F~~~~-wv--------~~~il~~l~~~~~~~-------~~~~~~~-----~ 249 (425)
.-++|.|..|+|||||++.+++ .++.+|+..+ ++ ..++++.+....... ..+.... .
T Consensus 70 Qr~~If~~~G~GKTtLa~~i~~--~i~~~~~~~~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~~~ 147 (274)
T cd01133 70 GKIGLFGGAGVGKTVLIMELIN--NIAKAHGGYSVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGARARVA 147 (274)
T ss_pred CEEEEecCCCCChhHHHHHHHH--HHHhcCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHH
Confidence 4578999999999999999999 5554554333 33 566666664432211 0111111 1
Q ss_pred HHHHHHHHHh--c-CCeEEEEecccC
Q 040913 250 LKKSILRDFL--T-NKKYFIALDDVC 272 (425)
Q Consensus 250 ~l~~~l~~~l--~-~kr~LlVLDdvw 272 (425)
...-.+.+++ + ++.+||++||+-
T Consensus 148 ~~a~~~AEyfr~~~g~~Vl~~~Dslt 173 (274)
T cd01133 148 LTGLTMAEYFRDEEGQDVLLFIDNIF 173 (274)
T ss_pred HHHHHHHHHHHHhcCCeEEEEEeChh
Confidence 2233455555 3 899999999994
No 115
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=96.77 E-value=0.024 Score=59.21 Aligned_cols=88 Identities=14% Similarity=0.219 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHHHhccCCCCCCCCccCCC-----c-ccccC--------CCCCCCCCCcccchhhHHHHHHHHhc----C
Q 040913 125 GLHSKIIDIRNRMQQLPPGDNGFDINEQR-----D-ELIHL--------SSEGQPRLDISEFERAREEWFDLLIE----G 186 (425)
Q Consensus 125 ~i~~~i~~i~~~l~~i~~~~~~~~~~~~~-----~-~~~~~--------~~~~~~~~~~vGr~~~~~~l~~~L~~----~ 186 (425)
.+-+-+.+=..+++.+......|++..+- + +|... .+...-+.+-+|.++-+++|++.+-- +
T Consensus 355 ~v~kv~~eEl~kL~~le~~~sEfnvtrNYLdwlt~LPWgk~S~En~dl~~Ak~iLdeDHYgm~dVKeRILEfiAV~kLrg 434 (906)
T KOG2004|consen 355 HVLKVIDEELTKLKLLEPSSSEFNVTRNYLDWLTSLPWGKSSTENLDLARAKEILDEDHYGMEDVKERILEFIAVGKLRG 434 (906)
T ss_pred HHHHHHHHHHHHHhccCccccchhHHHHHHHHHHhCCCCCCChhhhhHHHHHHhhcccccchHHHHHHHHHHHHHHhhcc
Confidence 34455666667788888888888765431 1 22111 22223356678999999999999864 3
Q ss_pred CCCcEEEEEEecCCCchHHHHHHhhc
Q 040913 187 PIGLSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 187 ~~~~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
..+-+++..+|++|||||++|+.|..
T Consensus 435 s~qGkIlCf~GPPGVGKTSI~kSIA~ 460 (906)
T KOG2004|consen 435 SVQGKILCFVGPPGVGKTSIAKSIAR 460 (906)
T ss_pred cCCCcEEEEeCCCCCCcccHHHHHHH
Confidence 45689999999999999999999987
No 116
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=96.77 E-value=0.0015 Score=66.82 Aligned_cols=48 Identities=10% Similarity=-0.025 Sum_probs=30.8
Q ss_pred CCCcccchhh--HHHHHHHHhcCCCCcEEEEEEecCCCchHHHHHHhhcC
Q 040913 166 RLDISEFERA--REEWFDLLIEGPIGLSVVAILDSSGFDKTAFAADTYNN 213 (425)
Q Consensus 166 ~~~~vGr~~~--~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLa~~v~~~ 213 (425)
++.++|.... ......+..........+.|+|..|+|||+|++.+.+.
T Consensus 122 d~fv~g~~n~~a~~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~ai~~~ 171 (450)
T PRK00149 122 DNFVVGKSNRLAHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGNY 171 (450)
T ss_pred cccccCCCcHHHHHHHHHHHhCcCccCCeEEEECCCCCCHHHHHHHHHHH
Confidence 3445565443 23333333332233456889999999999999999983
No 117
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.75 E-value=0.0021 Score=58.08 Aligned_cols=109 Identities=13% Similarity=0.089 Sum_probs=59.6
Q ss_pred EEEEEEecCCCchHHHHHHhhcCccccccccchHHHHH---HHHHHhCCCCCCCccCCCCHHHHHHHHHHHhcCCeEEEE
Q 040913 191 SVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWILD---DIIRSLMPPSRVTVIIGEDYKLKKSILRDFLTNKKYFIA 267 (425)
Q Consensus 191 ~vi~IvG~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~---~il~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~kr~LlV 267 (425)
++|.|+|+.|+||||++..+.. .+..+....++.+. +....-....-.......+.....+.++..+....=.|+
T Consensus 2 GlilI~GptGSGKTTll~~ll~--~~~~~~~~~i~t~e~~~E~~~~~~~~~i~q~~vg~~~~~~~~~i~~aLr~~pd~ii 79 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMID--YINKNKTHHILTIEDPIEFVHESKRSLINQREVGLDTLSFENALKAALRQDPDVIL 79 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHH--HhhhcCCcEEEEEcCCccccccCccceeeecccCCCccCHHHHHHHHhcCCcCEEE
Confidence 4789999999999999987665 22222222222200 000000000000000011223455667777777777999
Q ss_pred ecccCCChhhHHHHHhhCCCCCCCcEEEEecCChhHHH
Q 040913 268 LDDVCHNIEIWDDLEEVLPDNQNGSRVLITVINPSLLT 305 (425)
Q Consensus 268 LDdvw~~~~~~~~l~~~l~~~~~gskIivTTR~~~va~ 305 (425)
+|.+. +.+......... ..|..|+.|+...++..
T Consensus 80 ~gEir-d~e~~~~~l~~a---~~G~~v~~t~Ha~~~~~ 113 (198)
T cd01131 80 VGEMR-DLETIRLALTAA---ETGHLVMSTLHTNSAAK 113 (198)
T ss_pred EcCCC-CHHHHHHHHHHH---HcCCEEEEEecCCcHHH
Confidence 99998 776555443332 23566888887766554
No 118
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.74 E-value=0.017 Score=60.55 Aligned_cols=134 Identities=11% Similarity=0.009 Sum_probs=74.2
Q ss_pred CCcccchhhHHHHHHHHhcCCCCcEEEEEEecCCCchHHHHHHhhcCccccccc---cchHHHHHHHHHHhCCCCCC--C
Q 040913 167 LDISEFERAREEWFDLLIEGPIGLSVVAILDSSGFDKTAFAADTYNNNHVKFYF---DCLAWILDDIIRSLMPPSRV--T 241 (425)
Q Consensus 167 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLa~~v~~~~~~~~~F---~~~~wv~~~il~~l~~~~~~--~ 241 (425)
.+++|.+...+.|.+++..+. -.+.+.+.|+.|+||||+|+.+.+.-...... .|.. ....+.+...... .
T Consensus 13 ~eivGq~~i~~~L~~~i~~~r-~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~---C~~C~~i~~~~~~~~d 88 (584)
T PRK14952 13 AEVVGQEHVTEPLSSALDAGR-INHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGV---CESCVALAPNGPGSID 88 (584)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccc---cHHHHHhhcccCCCce
Confidence 468999999999999998754 34567899999999999998887632111100 1100 0011111110000 0
Q ss_pred --cc---CCCCHHHH---HHHHHHH-hcCCeEEEEecccCC-ChhhHHHHHhhCCCCCCCcEEEE-ecCChhHH
Q 040913 242 --VI---IGEDYKLK---KSILRDF-LTNKKYFIALDDVCH-NIEIWDDLEEVLPDNQNGSRVLI-TVINPSLL 304 (425)
Q Consensus 242 --~~---~~~~~~~l---~~~l~~~-l~~kr~LlVLDdvw~-~~~~~~~l~~~l~~~~~gskIiv-TTR~~~va 304 (425)
.. .....+++ .+.+... ..+++-++|+|++.. +....+.|...+..-...+.+|+ ||....+.
T Consensus 89 vieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~~kll 162 (584)
T PRK14952 89 VVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVL 162 (584)
T ss_pred EEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCChHhhH
Confidence 00 11123333 2222111 235666899999853 45677788777776555666554 54444443
No 119
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=96.74 E-value=0.012 Score=64.89 Aligned_cols=116 Identities=16% Similarity=0.162 Sum_probs=64.8
Q ss_pred CCcccchhhHHHHHHHHhcC-------CCCcEEEEEEecCCCchHHHHHHhhcCc----cccccccchHHHHHHHHHHhC
Q 040913 167 LDISEFERAREEWFDLLIEG-------PIGLSVVAILDSSGFDKTAFAADTYNNN----HVKFYFDCLAWILDDIIRSLM 235 (425)
Q Consensus 167 ~~~vGr~~~~~~l~~~L~~~-------~~~~~vi~IvG~gGvGKTtLa~~v~~~~----~~~~~F~~~~wv~~~il~~l~ 235 (425)
..++|.+..++.+.+.+... .....++.++|+.|+|||++|+.+...- .---.|++.-+.-..-...+.
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~d~s~~~~~~~~~~l~ 644 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRIDMSEYMEKHSVARLI 644 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEEechhhcccchHHHhc
Confidence 45899999999998888752 1235678899999999999999987621 101123332222111112221
Q ss_pred CCCCCCccCCC-CHHHHHHHHHHHhcCCeEEEEecccCC-ChhhHHHHHhhCCC
Q 040913 236 PPSRVTVIIGE-DYKLKKSILRDFLTNKKYFIALDDVCH-NIEIWDDLEEVLPD 287 (425)
Q Consensus 236 ~~~~~~~~~~~-~~~~l~~~l~~~l~~kr~LlVLDdvw~-~~~~~~~l~~~l~~ 287 (425)
.... +.... ....+...++. ....+|+||++.. +.+.++.+...+..
T Consensus 645 g~~~--g~~g~~~~g~l~~~v~~---~p~~vlllDeieka~~~v~~~Ll~~l~~ 693 (852)
T TIGR03346 645 GAPP--GYVGYEEGGQLTEAVRR---KPYSVVLFDEVEKAHPDVFNVLLQVLDD 693 (852)
T ss_pred CCCC--CccCcccccHHHHHHHc---CCCcEEEEeccccCCHHHHHHHHHHHhc
Confidence 1111 11111 11223223221 2335999999963 34677777777753
No 120
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.73 E-value=0.0078 Score=54.90 Aligned_cols=118 Identities=17% Similarity=0.186 Sum_probs=71.9
Q ss_pred CCCCCCCcccchhhHHHHHHH---HhcCCCCcEEEEEEecCCCchHHHHHHhhcCccccccccchHHHHHHHHHHhCCCC
Q 040913 162 EGQPRLDISEFERAREEWFDL---LIEGPIGLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWILDDIIRSLMPPS 238 (425)
Q Consensus 162 ~~~~~~~~vGr~~~~~~l~~~---L~~~~~~~~vi~IvG~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~~il~~l~~~~ 238 (425)
+.++-..++|.+..++.+++- +..+. ...-|..||.-|.||++|++++.+ ++....-..+
T Consensus 55 ~~i~L~~l~Gvd~qk~~L~~NT~~F~~G~-pANnVLLwGaRGtGKSSLVKA~~~--e~~~~glrLV-------------- 117 (287)
T COG2607 55 DPIDLADLVGVDRQKEALVRNTEQFAEGL-PANNVLLWGARGTGKSSLVKALLN--EYADEGLRLV-------------- 117 (287)
T ss_pred CCcCHHHHhCchHHHHHHHHHHHHHHcCC-cccceEEecCCCCChHHHHHHHHH--HHHhcCCeEE--------------
Confidence 344556789999999888753 22332 233467899999999999999998 4332211000
Q ss_pred CCCccCCCCHHHHHHHHHHHhc--CCeEEEEecccCC--ChhhHHHHHhhCCCC---CCCcEEEEecCC
Q 040913 239 RVTVIIGEDYKLKKSILRDFLT--NKKYFIALDDVCH--NIEIWDDLEEVLPDN---QNGSRVLITVIN 300 (425)
Q Consensus 239 ~~~~~~~~~~~~l~~~l~~~l~--~kr~LlVLDdvw~--~~~~~~~l~~~l~~~---~~gskIivTTR~ 300 (425)
+....+...+ -.|.+.|+ ..||.|..||+.+ ....+..++..|..+ .+...++..|.|
T Consensus 118 ---EV~k~dl~~L-p~l~~~Lr~~~~kFIlFcDDLSFe~gd~~yK~LKs~LeG~ve~rP~NVl~YATSN 182 (287)
T COG2607 118 ---EVDKEDLATL-PDLVELLRARPEKFILFCDDLSFEEGDDAYKALKSALEGGVEGRPANVLFYATSN 182 (287)
T ss_pred ---EEcHHHHhhH-HHHHHHHhcCCceEEEEecCCCCCCCchHHHHHHHHhcCCcccCCCeEEEEEecC
Confidence 1111122222 23344443 5899999999975 346888899888743 233344444544
No 121
>PRK07667 uridine kinase; Provisional
Probab=96.72 E-value=0.0021 Score=57.75 Aligned_cols=37 Identities=19% Similarity=0.179 Sum_probs=31.7
Q ss_pred HHHHHHHHhcCCCCcEEEEEEecCCCchHHHHHHhhc
Q 040913 176 REEWFDLLIEGPIGLSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 176 ~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
.+.|.+.+........+|+|-|.+|+||||+|+.+..
T Consensus 3 ~~~~~~~~~~~~~~~~iIgI~G~~gsGKStla~~L~~ 39 (193)
T PRK07667 3 TNELINIMKKHKENRFILGIDGLSRSGKTTFVANLKE 39 (193)
T ss_pred HHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4677777877666779999999999999999998877
No 122
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=96.71 E-value=0.0048 Score=62.16 Aligned_cols=47 Identities=11% Similarity=-0.036 Sum_probs=30.0
Q ss_pred CCCcccchhhH--HHHHHHHhcCCCCcEEEEEEecCCCchHHHHHHhhc
Q 040913 166 RLDISEFERAR--EEWFDLLIEGPIGLSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 166 ~~~~vGr~~~~--~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
++.++|..... ..+..+..........+.|+|..|+|||+|++.+++
T Consensus 110 d~fi~g~~n~~a~~~~~~~~~~~~~~~n~l~l~G~~G~GKThL~~ai~~ 158 (405)
T TIGR00362 110 DNFVVGKSNRLAHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGN 158 (405)
T ss_pred cccccCCcHHHHHHHHHHHHhCcCccCCeEEEECCCCCcHHHHHHHHHH
Confidence 34456755442 222233332222345678999999999999999998
No 123
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.71 E-value=0.011 Score=62.25 Aligned_cols=47 Identities=15% Similarity=0.076 Sum_probs=39.2
Q ss_pred CCCcccchhhHHHHHHHHhcCC---CCcEEEEEEecCCCchHHHHHHhhc
Q 040913 166 RLDISEFERAREEWFDLLIEGP---IGLSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 166 ~~~~vGr~~~~~~l~~~L~~~~---~~~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
-.+++|-++.++++..++.... ....++.++|++|+||||+++.+..
T Consensus 83 ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~ 132 (637)
T TIGR00602 83 QHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSK 132 (637)
T ss_pred HHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4568999999999999987642 2346799999999999999999987
No 124
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.69 E-value=0.013 Score=60.21 Aligned_cols=45 Identities=11% Similarity=-0.091 Sum_probs=37.2
Q ss_pred CCcccchhhHHHHHHHHhcCCCCcEEEEEEecCCCchHHHHHHhhc
Q 040913 167 LDISEFERAREEWFDLLIEGPIGLSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 167 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
.+++|.+.....+.+++..+. -.+.+.++|+.|+||||+|+.+..
T Consensus 16 ~diiGq~~i~~~L~~~i~~~~-i~hayLf~Gp~G~GKTtlAr~lAk 60 (486)
T PRK14953 16 KEVIGQEIVVRILKNAVKLQR-VSHAYIFAGPRGTGKTTIARILAK 60 (486)
T ss_pred HHccChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHH
Confidence 468899999999999997754 345667899999999999988765
No 125
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=96.69 E-value=0.014 Score=61.46 Aligned_cols=134 Identities=10% Similarity=0.028 Sum_probs=73.5
Q ss_pred CCCcccchhhHHHHHHHHhcCCCCcEEEEEEecCCCchHHHHHHhhcCccccc-------cccchHHHHHHHHHHhCCCC
Q 040913 166 RLDISEFERAREEWFDLLIEGPIGLSVVAILDSSGFDKTAFAADTYNNNHVKF-------YFDCLAWILDDIIRSLMPPS 238 (425)
Q Consensus 166 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLa~~v~~~~~~~~-------~F~~~~wv~~~il~~l~~~~ 238 (425)
-.+++|.+..++.|.+.+..+. -...+-++|+.|+||||+|+.+.+.-.... .++.+-+. .-.+.+....
T Consensus 23 f~dliGq~~~v~~L~~~~~~gr-i~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg~c--~~C~~i~~g~ 99 (598)
T PRK09111 23 FDDLIGQEAMVRTLTNAFETGR-IAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCGVG--EHCQAIMEGR 99 (598)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCccc--HHHHHHhcCC
Confidence 3578999999999999988764 344677899999999999998876321111 01111111 0001111111
Q ss_pred CCC--c---cCCCCHHHHHHHHHHHh-----cCCeEEEEecccCC-ChhhHHHHHhhCCCCCCCcEEEEec-CChhH
Q 040913 239 RVT--V---IIGEDYKLKKSILRDFL-----TNKKYFIALDDVCH-NIEIWDDLEEVLPDNQNGSRVLITV-INPSL 303 (425)
Q Consensus 239 ~~~--~---~~~~~~~~l~~~l~~~l-----~~kr~LlVLDdvw~-~~~~~~~l~~~l~~~~~gskIivTT-R~~~v 303 (425)
... . ......+++.+ +.+.+ .+++-++|+|++.. +....+.+...+..-..++++|++| ....+
T Consensus 100 h~Dv~e~~a~s~~gvd~IRe-Iie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte~~kl 175 (598)
T PRK09111 100 HVDVLEMDAASHTGVDDIRE-IIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEIRKV 175 (598)
T ss_pred CCceEEecccccCCHHHHHH-HHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCChhhh
Confidence 000 0 01122333332 22222 24566899999952 4456777777776555567765544 44443
No 126
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=96.69 E-value=0.0082 Score=61.21 Aligned_cols=47 Identities=15% Similarity=0.005 Sum_probs=29.6
Q ss_pred CCCcccchhh--HHHHHHHHhcCCCCcEEEEEEecCCCchHHHHHHhhc
Q 040913 166 RLDISEFERA--REEWFDLLIEGPIGLSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 166 ~~~~vGr~~~--~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
++-++|..+. ......+...+......+-|+|..|+|||+|++.+.+
T Consensus 115 dnFv~g~~n~~A~~aa~~~a~~~~~~~npl~i~G~~G~GKTHLl~Ai~~ 163 (450)
T PRK14087 115 ENFVIGSSNEQAFIAVQTVSKNPGISYNPLFIYGESGMGKTHLLKAAKN 163 (450)
T ss_pred hcccCCCcHHHHHHHHHHHHhCcCcccCceEEECCCCCcHHHHHHHHHH
Confidence 3445575443 2222233332222345578999999999999999988
No 127
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=96.68 E-value=0.0021 Score=69.24 Aligned_cols=44 Identities=20% Similarity=0.108 Sum_probs=36.7
Q ss_pred CCcccchhhHHHHHHHHhcCCCCcEEEEEEecCCCchHHHHHHhhc
Q 040913 167 LDISEFERAREEWFDLLIEGPIGLSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 167 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
..++||+.++.++++.|..... .-+.++|++|+|||++|+.+.+
T Consensus 186 ~~liGR~~ei~~~i~iL~r~~~--~n~LLvGppGvGKT~lae~la~ 229 (758)
T PRK11034 186 DPLIGREKELERAIQVLCRRRK--NNPLLVGESGVGKTAIAEGLAW 229 (758)
T ss_pred CcCcCCCHHHHHHHHHHhccCC--CCeEEECCCCCCHHHHHHHHHH
Confidence 4589999999999999987542 2234799999999999999886
No 128
>COG3899 Predicted ATPase [General function prediction only]
Probab=96.68 E-value=0.009 Score=65.62 Aligned_cols=45 Identities=16% Similarity=0.090 Sum_probs=38.4
Q ss_pred CcccchhhHHHHHHHHhcC-CCCcEEEEEEecCCCchHHHHHHhhc
Q 040913 168 DISEFERAREEWFDLLIEG-PIGLSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 168 ~~vGr~~~~~~l~~~L~~~-~~~~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
.++||+.+.+.|...+..- .....++.+.|..|+|||+|++.|..
T Consensus 1 ~l~GRe~ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~~ 46 (849)
T COG3899 1 PLYGRETELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVHK 46 (849)
T ss_pred CCCchHhHHHHHHHHHHHHhCCCeEEEEEeecCCCcHHHHHHHHHH
Confidence 3789999999999888764 23466999999999999999999987
No 129
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=96.67 E-value=0.0033 Score=53.19 Aligned_cols=88 Identities=16% Similarity=0.149 Sum_probs=45.4
Q ss_pred EEEEEecCCCchHHHHHHhhcCccccccccchHHHHHHHHHHhCCCCCCCccCCCCH-----HHHHHHHHHHhcCCeEEE
Q 040913 192 VVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWILDDIIRSLMPPSRVTVIIGEDY-----KLKKSILRDFLTNKKYFI 266 (425)
Q Consensus 192 vi~IvG~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~~il~~l~~~~~~~~~~~~~~-----~~l~~~l~~~l~~kr~Ll 266 (425)
+|.++|++|+||||+|+.+..... ..+++ .+.+...+.............. ..+...+...+..... +
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~-~~~i~-----~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~-~ 73 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLG-AVVIS-----QDEIRRRLAGEDPPSPSDYIEAEERAYQILNAAIRKALRNGNS-V 73 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHST-EEEEE-----HHHHHHHHCCSSSGCCCCCHHHHHHHHHHHHHHHHHHHHTT-E-E
T ss_pred CEEEECCCCCCHHHHHHHHHHHCC-CEEEe-----HHHHHHHHcccccccchhHHHHHHHHHHHHHHHHHHHHHcCCC-c
Confidence 578899999999999999885211 11111 4555666665322111111111 1223444455544444 6
Q ss_pred EecccCCChhhHHHHHhhCC
Q 040913 267 ALDDVCHNIEIWDDLEEVLP 286 (425)
Q Consensus 267 VLDdvw~~~~~~~~l~~~l~ 286 (425)
|+|+-......+..+...+.
T Consensus 74 vvd~~~~~~~~r~~~~~~~~ 93 (143)
T PF13671_consen 74 VVDNTNLSREERARLRELAR 93 (143)
T ss_dssp EEESS--SHHHHHHHHHHHH
T ss_pred eeccCcCCHHHHHHHHHHHH
Confidence 66755324555556655554
No 130
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.66 E-value=0.0014 Score=57.97 Aligned_cols=30 Identities=27% Similarity=0.331 Sum_probs=24.4
Q ss_pred CcEEEEEEecCCCchHHHHHHhhcCccccccc
Q 040913 189 GLSVVAILDSSGFDKTAFAADTYNNNHVKFYF 220 (425)
Q Consensus 189 ~~~vi~IvG~gGvGKTtLa~~v~~~~~~~~~F 220 (425)
...+|.+.|+.|+||||+|+.+++ +....+
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~--~l~~~~ 35 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYE--RLKLKY 35 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHH--HHHHcC
Confidence 356899999999999999999987 444333
No 131
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.65 E-value=0.013 Score=61.39 Aligned_cols=133 Identities=12% Similarity=0.087 Sum_probs=71.5
Q ss_pred CCcccchhhHHHHHHHHhcCCCCcEEEEEEecCCCchHHHHHHhhcCccccc---cccchHHHHHHHHHHhCCCCCCC--
Q 040913 167 LDISEFERAREEWFDLLIEGPIGLSVVAILDSSGFDKTAFAADTYNNNHVKF---YFDCLAWILDDIIRSLMPPSRVT-- 241 (425)
Q Consensus 167 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLa~~v~~~~~~~~---~F~~~~wv~~~il~~l~~~~~~~-- 241 (425)
.+++|-+..+..|.+.+..+. -...+-++|+.|+||||+|+.+.+.-.... ...|.. ....+.+.......
T Consensus 16 ~dIiGQe~v~~~L~~ai~~~r-i~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~---C~sC~~i~~g~hpDv~ 91 (624)
T PRK14959 16 AEVAGQETVKAILSRAAQENR-VAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNT---CEQCRKVTQGMHVDVV 91 (624)
T ss_pred HHhcCCHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcc---cHHHHHHhcCCCCceE
Confidence 467898888888888887653 246677899999999999988876321111 001100 00001111110000
Q ss_pred cc---CCCCHHHHHHHHHHHh-----cCCeEEEEecccCC-ChhhHHHHHhhCCCCCCCcEEEEecCC-hhHH
Q 040913 242 VI---IGEDYKLKKSILRDFL-----TNKKYFIALDDVCH-NIEIWDDLEEVLPDNQNGSRVLITVIN-PSLL 304 (425)
Q Consensus 242 ~~---~~~~~~~l~~~l~~~l-----~~kr~LlVLDdvw~-~~~~~~~l~~~l~~~~~gskIivTTR~-~~va 304 (425)
.. .....+++. .+.+.+ .+++-+||+|++.. +....+.|...+..-.....+|++|.+ ..+.
T Consensus 92 eId~a~~~~Id~iR-~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~~kll 163 (624)
T PRK14959 92 EIDGASNRGIDDAK-RLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKFP 163 (624)
T ss_pred EEecccccCHHHHH-HHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCChhhhh
Confidence 00 011222222 233222 35677999999962 346677777777544445555555544 4433
No 132
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=96.63 E-value=0.012 Score=63.48 Aligned_cols=113 Identities=14% Similarity=0.210 Sum_probs=64.4
Q ss_pred CCcccchhhHHHHHHHHhcC-------CCCcEEEEEEecCCCchHHHHHHhhcCcccccc---ccchHHHHHHHHHHhCC
Q 040913 167 LDISEFERAREEWFDLLIEG-------PIGLSVVAILDSSGFDKTAFAADTYNNNHVKFY---FDCLAWILDDIIRSLMP 236 (425)
Q Consensus 167 ~~~vGr~~~~~~l~~~L~~~-------~~~~~vi~IvG~gGvGKTtLa~~v~~~~~~~~~---F~~~~wv~~~il~~l~~ 236 (425)
..++|.+..++.|.+.+... ......+.++|++|+|||+||+.+... .... |++.-+.-..-...+..
T Consensus 458 ~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~--l~~~~i~id~se~~~~~~~~~LiG 535 (758)
T PRK11034 458 MLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKA--LGIELLRFDMSEYMERHTVSRLIG 535 (758)
T ss_pred ceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHH--hCCCcEEeechhhcccccHHHHcC
Confidence 34789999999988887632 223567889999999999999988773 2222 23333321111233322
Q ss_pred CCCCCccCCCCHHHHHHHHHHHhcC-CeEEEEecccCC-ChhhHHHHHhhCC
Q 040913 237 PSRVTVIIGEDYKLKKSILRDFLTN-KKYFIALDDVCH-NIEIWDDLEEVLP 286 (425)
Q Consensus 237 ~~~~~~~~~~~~~~l~~~l~~~l~~-kr~LlVLDdvw~-~~~~~~~l~~~l~ 286 (425)
... +....+.. ..+.+.++. ...+|+||++.. ..+.++.+...+.
T Consensus 536 ~~~--gyvg~~~~---g~L~~~v~~~p~sVlllDEieka~~~v~~~LLq~ld 582 (758)
T PRK11034 536 APP--GYVGFDQG---GLLTDAVIKHPHAVLLLDEIEKAHPDVFNLLLQVMD 582 (758)
T ss_pred CCC--Cccccccc---chHHHHHHhCCCcEEEeccHhhhhHHHHHHHHHHHh
Confidence 211 11111111 122333333 446999999962 3366777776664
No 133
>PRK06921 hypothetical protein; Provisional
Probab=96.62 E-value=0.0011 Score=62.59 Aligned_cols=24 Identities=25% Similarity=0.332 Sum_probs=21.3
Q ss_pred cEEEEEEecCCCchHHHHHHhhcC
Q 040913 190 LSVVAILDSSGFDKTAFAADTYNN 213 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~~ 213 (425)
...+.++|..|+|||+||..+.+.
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~ 140 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANE 140 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 456889999999999999999883
No 134
>PRK08939 primosomal protein DnaI; Reviewed
Probab=96.61 E-value=0.0026 Score=61.34 Aligned_cols=118 Identities=18% Similarity=0.144 Sum_probs=60.3
Q ss_pred cchhhHHHHHHHHhcCC--CCcEEEEEEecCCCchHHHHHHhhcCccccccccchHHH-HHHHHHHhCCCCCCCccCCCC
Q 040913 171 EFERAREEWFDLLIEGP--IGLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWI-LDDIIRSLMPPSRVTVIIGED 247 (425)
Q Consensus 171 Gr~~~~~~l~~~L~~~~--~~~~vi~IvG~gGvGKTtLa~~v~~~~~~~~~F~~~~wv-~~~il~~l~~~~~~~~~~~~~ 247 (425)
++........+++..-. ...+-+-++|..|+|||.||..+.+..- ...+.+. ++ ..+++..+..... ..+
T Consensus 135 ~~~~~~~~~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~Aia~~l~-~~g~~v~-~~~~~~l~~~lk~~~~-----~~~ 207 (306)
T PRK08939 135 DRLDALMAALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAAIANELA-KKGVSST-LLHFPEFIRELKNSIS-----DGS 207 (306)
T ss_pred HHHHHHHHHHHHHHHhhccCCCCeEEEECCCCCCHHHHHHHHHHHHH-HcCCCEE-EEEHHHHHHHHHHHHh-----cCc
Confidence 44444555566665322 1345688999999999999999998421 2222221 22 2233333322111 012
Q ss_pred HHHHHHHHHHHhcCCeEEEEecccCC-ChhhHHH--HHhhC-CCC-CCCcEEEEecCC
Q 040913 248 YKLKKSILRDFLTNKKYFIALDDVCH-NIEIWDD--LEEVL-PDN-QNGSRVLITVIN 300 (425)
Q Consensus 248 ~~~l~~~l~~~l~~kr~LlVLDdvw~-~~~~~~~--l~~~l-~~~-~~gskIivTTR~ 300 (425)
....... + .+-=||||||+.. ....|.. +...+ ... ..+..+|+||..
T Consensus 208 ~~~~l~~----l-~~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSNl 260 (306)
T PRK08939 208 VKEKIDA----V-KEAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSNF 260 (306)
T ss_pred HHHHHHH----h-cCCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECCC
Confidence 2222222 2 2456899999962 2346643 43333 221 234557777743
No 135
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.59 E-value=0.011 Score=62.06 Aligned_cols=132 Identities=11% Similarity=0.059 Sum_probs=72.7
Q ss_pred CCCcccchhhHHHHHHHHhcCCCCcEEEEEEecCCCchHHHHHHhhcCcccc------ccccchHHHHHHHHHHhCCCCC
Q 040913 166 RLDISEFERAREEWFDLLIEGPIGLSVVAILDSSGFDKTAFAADTYNNNHVK------FYFDCLAWILDDIIRSLMPPSR 239 (425)
Q Consensus 166 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLa~~v~~~~~~~------~~F~~~~wv~~~il~~l~~~~~ 239 (425)
-.+++|.+..+..|.+.+..+. -.+.+-++|+.|+||||+|+.+.+.--.. .+-.|... ..+.....
T Consensus 15 f~~iiGq~~v~~~L~~~i~~~~-~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c------~~i~~g~~ 87 (576)
T PRK14965 15 FSDLTGQEHVSRTLQNAIDTGR-VAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPC------VEITEGRS 87 (576)
T ss_pred HHHccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHH------HHHhcCCC
Confidence 3578999999999999988764 34566789999999999998876631111 11111111 11111000
Q ss_pred CC-----ccCCCCHHH---HHHHHHHH-hcCCeEEEEecccCC-ChhhHHHHHhhCCCCCCCcEEEE-ecCChhHH
Q 040913 240 VT-----VIIGEDYKL---KKSILRDF-LTNKKYFIALDDVCH-NIEIWDDLEEVLPDNQNGSRVLI-TVINPSLL 304 (425)
Q Consensus 240 ~~-----~~~~~~~~~---l~~~l~~~-l~~kr~LlVLDdvw~-~~~~~~~l~~~l~~~~~gskIiv-TTR~~~va 304 (425)
.. .......++ +...+... ..+++-++|+|++.. +....+.|...+..-...+.+|+ ||....+.
T Consensus 88 ~d~~eid~~s~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~~kl~ 163 (576)
T PRK14965 88 VDVFEIDGASNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVP 163 (576)
T ss_pred CCeeeeeccCccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCChhhhh
Confidence 00 001112223 22222211 134566899999852 44667777777765555666554 44444443
No 136
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=96.59 E-value=0.017 Score=62.82 Aligned_cols=88 Identities=13% Similarity=0.146 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHHhccCCCCCCCCccCCC-----c-ccccCC--------CCCCCCCCcccchhhHHHHHHHHhcC----
Q 040913 125 GLHSKIIDIRNRMQQLPPGDNGFDINEQR-----D-ELIHLS--------SEGQPRLDISEFERAREEWFDLLIEG---- 186 (425)
Q Consensus 125 ~i~~~i~~i~~~l~~i~~~~~~~~~~~~~-----~-~~~~~~--------~~~~~~~~~vGr~~~~~~l~~~L~~~---- 186 (425)
...+++.+=.+|++.+......|++..+- + +|...+ +...-+.+.+|.++.+++|+++|...
T Consensus 266 ~~~~~~~~e~~~~~~~~~~~~e~~~~~~yl~~~~~~pw~~~~~~~~~~~~~~~~l~~~~~g~~~vK~~i~~~l~~~~~~~ 345 (784)
T PRK10787 266 EAKEKAEAELQKLKMMSPMSAEATVVRGYIDWMVQVPWNARSKVKKDLRQAQEILDTDHYGLERVKDRILEYLAVQSRVN 345 (784)
T ss_pred HHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHhCCCCCCCcccccHHHHHHHhhhhccCHHHHHHHHHHHHHHHHhcc
Confidence 44455555556777777666666544321 0 222211 11223456899999999999888742
Q ss_pred CCCcEEEEEEecCCCchHHHHHHhhc
Q 040913 187 PIGLSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 187 ~~~~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
.....++.++|++|+||||+|+.+..
T Consensus 346 ~~~g~~i~l~GppG~GKTtl~~~ia~ 371 (784)
T PRK10787 346 KIKGPILCLVGPPGVGKTSLGQSIAK 371 (784)
T ss_pred cCCCceEEEECCCCCCHHHHHHHHHH
Confidence 22456789999999999999999887
No 137
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=96.58 E-value=0.0096 Score=52.48 Aligned_cols=116 Identities=13% Similarity=0.111 Sum_probs=68.9
Q ss_pred cEEEEEEecCCCchHHHHHHhhcCccccc------ccc---------------------------------chHHH----
Q 040913 190 LSVVAILDSSGFDKTAFAADTYNNNHVKF------YFD---------------------------------CLAWI---- 226 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~~~~~~~------~F~---------------------------------~~~wv---- 226 (425)
-..+-++|++|.|||||.+.+|..++-.. .|+ .+++.
T Consensus 28 Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rLL~~~tvyeNVA~pL~v~ 107 (223)
T COG2884 28 GEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALPLRVI 107 (223)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhheeeeEeeeccccccchHhhhhhhhhhcc
Confidence 45788999999999999999997544221 011 11111
Q ss_pred ----------HHHHHHHhCCCCCCC--ccCCCCHHHHHHHHHHHhcCCeEEEEecccCC---ChhhHHHHHhhCCCCCCC
Q 040913 227 ----------LDDIIRSLMPPSRVT--VIIGEDYKLKKSILRDFLTNKKYFIALDDVCH---NIEIWDDLEEVLPDNQNG 291 (425)
Q Consensus 227 ----------~~~il~~l~~~~~~~--~~~~~~~~~l~~~l~~~l~~kr~LlVLDdvw~---~~~~~~~l~~~l~~~~~g 291 (425)
....+...+...... ...-+.-++-.-.|...+-++.-+++=|.--- ..-.|+-+.-.-.-+..|
T Consensus 108 G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~G 187 (223)
T COG2884 108 GKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLG 187 (223)
T ss_pred CCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcC
Confidence 333333333322211 11223334445567777778888888886421 234665554433346679
Q ss_pred cEEEEecCChhHHH
Q 040913 292 SRVLITVINPSLLT 305 (425)
Q Consensus 292 skIivTTR~~~va~ 305 (425)
+.||++|.+.++-.
T Consensus 188 tTVl~ATHd~~lv~ 201 (223)
T COG2884 188 TTVLMATHDLELVN 201 (223)
T ss_pred cEEEEEeccHHHHH
Confidence 99999999988654
No 138
>CHL00176 ftsH cell division protein; Validated
Probab=96.55 E-value=0.011 Score=62.82 Aligned_cols=96 Identities=17% Similarity=0.220 Sum_probs=54.7
Q ss_pred CCCCCcccchhhHHHHHH---HHhcCC-------CCcEEEEEEecCCCchHHHHHHhhcCccccccccchHHHHHHHHHH
Q 040913 164 QPRLDISEFERAREEWFD---LLIEGP-------IGLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWILDDIIRS 233 (425)
Q Consensus 164 ~~~~~~vGr~~~~~~l~~---~L~~~~-------~~~~vi~IvG~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~~il~~ 233 (425)
..-.++.|.++.++++.+ .+.... ...+-+.++|++|+|||+||+.+.+. ....|-..- ..++...
T Consensus 180 ~~f~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e--~~~p~i~is--~s~f~~~ 255 (638)
T CHL00176 180 ITFRDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGE--AEVPFFSIS--GSEFVEM 255 (638)
T ss_pred CCHHhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHH--hCCCeeecc--HHHHHHH
Confidence 344568887776666544 444332 22456889999999999999999883 332331100 0011000
Q ss_pred hCCCCCCCccCCCCHHHHHHHHHHHhcCCeEEEEecccC
Q 040913 234 LMPPSRVTVIIGEDYKLKKSILRDFLTNKKYFIALDDVC 272 (425)
Q Consensus 234 l~~~~~~~~~~~~~~~~l~~~l~~~l~~kr~LlVLDdvw 272 (425)
. .......+...+........++|++||+.
T Consensus 256 ~---------~g~~~~~vr~lF~~A~~~~P~ILfIDEID 285 (638)
T CHL00176 256 F---------VGVGAARVRDLFKKAKENSPCIVFIDEID 285 (638)
T ss_pred h---------hhhhHHHHHHHHHHHhcCCCcEEEEecch
Confidence 0 00112233444455556788999999994
No 139
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.52 E-value=0.015 Score=61.49 Aligned_cols=129 Identities=9% Similarity=0.075 Sum_probs=73.2
Q ss_pred CCcccchhhHHHHHHHHhcCCCCcEEEEEEecCCCchHHHHHHhhcCcccc----------ccccchHHHHHHHHHHhCC
Q 040913 167 LDISEFERAREEWFDLLIEGPIGLSVVAILDSSGFDKTAFAADTYNNNHVK----------FYFDCLAWILDDIIRSLMP 236 (425)
Q Consensus 167 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLa~~v~~~~~~~----------~~F~~~~wv~~~il~~l~~ 236 (425)
.+++|.+...+.|.+++..+. -.+.+-++|+.|+||||+|+.+...-... .+=.|+.|- . ..
T Consensus 17 ~~viGq~~~~~~L~~~i~~~~-l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~-----~--~~ 88 (614)
T PRK14971 17 ESVVGQEALTTTLKNAIATNK-LAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFN-----E--QR 88 (614)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-CCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHh-----c--CC
Confidence 568999999999999998764 34567899999999999998766521100 000111111 0 00
Q ss_pred CCCCC---ccCCCCHHHHHHHHHHH----hcCCeEEEEecccCC-ChhhHHHHHhhCCCCCCCcEEEE-ecCChhH
Q 040913 237 PSRVT---VIIGEDYKLKKSILRDF----LTNKKYFIALDDVCH-NIEIWDDLEEVLPDNQNGSRVLI-TVINPSL 303 (425)
Q Consensus 237 ~~~~~---~~~~~~~~~l~~~l~~~----l~~kr~LlVLDdvw~-~~~~~~~l~~~l~~~~~gskIiv-TTR~~~v 303 (425)
..+.. .......+++...+... ..+++-++|+|++.. +...++.+...+..-..++.+|+ ||....+
T Consensus 89 ~~n~~~ld~~~~~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~tifIL~tt~~~kI 164 (614)
T PRK14971 89 SYNIHELDAASNNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIFILATTEKHKI 164 (614)
T ss_pred CCceEEecccccCCHHHHHHHHHHHhhCcccCCcEEEEEECcccCCHHHHHHHHHHHhCCCCCeEEEEEeCCchhc
Confidence 00000 00112233333333221 234666889999863 45678888888776555666555 4444443
No 140
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.52 E-value=0.0027 Score=61.81 Aligned_cols=23 Identities=13% Similarity=0.125 Sum_probs=20.8
Q ss_pred EEEEEEecCCCchHHHHHHhhcC
Q 040913 191 SVVAILDSSGFDKTAFAADTYNN 213 (425)
Q Consensus 191 ~vi~IvG~gGvGKTtLa~~v~~~ 213 (425)
.-+.++|..|+|||+||..+.+.
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~ 206 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKE 206 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHH
Confidence 56889999999999999999883
No 141
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=96.50 E-value=0.0053 Score=62.42 Aligned_cols=24 Identities=13% Similarity=0.245 Sum_probs=21.1
Q ss_pred cEEEEEEecCCCchHHHHHHhhcC
Q 040913 190 LSVVAILDSSGFDKTAFAADTYNN 213 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~~ 213 (425)
...+.|+|+.|+|||+|++.+.+.
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~ 164 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHA 164 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHH
Confidence 356789999999999999999983
No 142
>CHL00095 clpC Clp protease ATP binding subunit
Probab=96.48 E-value=0.021 Score=62.74 Aligned_cols=115 Identities=13% Similarity=0.180 Sum_probs=63.8
Q ss_pred CCcccchhhHHHHHHHHhcC-------CCCcEEEEEEecCCCchHHHHHHhhcC----ccccccccchHHH-HHHHHHHh
Q 040913 167 LDISEFERAREEWFDLLIEG-------PIGLSVVAILDSSGFDKTAFAADTYNN----NHVKFYFDCLAWI-LDDIIRSL 234 (425)
Q Consensus 167 ~~~vGr~~~~~~l~~~L~~~-------~~~~~vi~IvG~gGvGKTtLa~~v~~~----~~~~~~F~~~~wv-~~~il~~l 234 (425)
..++|.+..++.|.+.+... +....++.++|+.|+|||+||+.+.+. ..---.|+..-+. ...+.+-+
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~~~~~~~~~l~ 588 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFGSEDAMIRLDMSEYMEKHTVSKLI 588 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEEEchhccccccHHHhc
Confidence 56889999999998887632 223456778999999999999887652 1111112222221 11111112
Q ss_pred CCCCCCCccCCCCHHHHHHHHHHHhcCCe-EEEEecccCC-ChhhHHHHHhhCCC
Q 040913 235 MPPSRVTVIIGEDYKLKKSILRDFLTNKK-YFIALDDVCH-NIEIWDDLEEVLPD 287 (425)
Q Consensus 235 ~~~~~~~~~~~~~~~~l~~~l~~~l~~kr-~LlVLDdvw~-~~~~~~~l~~~l~~ 287 (425)
+.+.. ....+.. ..+.+.++.+. .+|+||++.. +.+.++.+...+..
T Consensus 589 g~~~g---yvg~~~~---~~l~~~~~~~p~~VvllDeieka~~~v~~~Llq~le~ 637 (821)
T CHL00095 589 GSPPG---YVGYNEG---GQLTEAVRKKPYTVVLFDEIEKAHPDIFNLLLQILDD 637 (821)
T ss_pred CCCCc---ccCcCcc---chHHHHHHhCCCeEEEECChhhCCHHHHHHHHHHhcc
Confidence 22211 1111111 12344444444 5899999963 34677777777654
No 143
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.47 E-value=0.0057 Score=66.43 Aligned_cols=96 Identities=20% Similarity=0.198 Sum_probs=57.6
Q ss_pred CCCCCcccchhhHHHHHHHHhcC-----------CCCcEEEEEEecCCCchHHHHHHhhcCccccccccchHHHHHHHHH
Q 040913 164 QPRLDISEFERAREEWFDLLIEG-----------PIGLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWILDDIIR 232 (425)
Q Consensus 164 ~~~~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~IvG~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~~il~ 232 (425)
..-+++.|.+..+++|.+++... -...+-|.++|++|+||||||+.+.+ .....|-.. - ..++..
T Consensus 175 ~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~--~~~~~~i~i-~-~~~i~~ 250 (733)
T TIGR01243 175 VTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVAN--EAGAYFISI-N-GPEIMS 250 (733)
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHH--HhCCeEEEE-e-cHHHhc
Confidence 44456889999999988776421 02345678999999999999999988 333333100 0 011111
Q ss_pred HhCCCCCCCccCCCCHHHHHHHHHHHhcCCeEEEEecccC
Q 040913 233 SLMPPSRVTVIIGEDYKLKKSILRDFLTNKKYFIALDDVC 272 (425)
Q Consensus 233 ~l~~~~~~~~~~~~~~~~l~~~l~~~l~~kr~LlVLDdvw 272 (425)
. ........+...+.........+|+||++.
T Consensus 251 ~---------~~g~~~~~l~~lf~~a~~~~p~il~iDEid 281 (733)
T TIGR01243 251 K---------YYGESEERLREIFKEAEENAPSIIFIDEID 281 (733)
T ss_pred c---------cccHHHHHHHHHHHHHHhcCCcEEEeehhh
Confidence 1 011122334444444445667899999984
No 144
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=96.46 E-value=0.0032 Score=64.77 Aligned_cols=45 Identities=16% Similarity=0.135 Sum_probs=38.8
Q ss_pred CcccchhhHHHHHHHHhc----CCCCcEEEEEEecCCCchHHHHHHhhc
Q 040913 168 DISEFERAREEWFDLLIE----GPIGLSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 168 ~~vGr~~~~~~l~~~L~~----~~~~~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
+++|.++.+++|++.|.. -....+++.++|++|+||||||+.+.+
T Consensus 77 d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~ 125 (644)
T PRK15455 77 EFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKS 125 (644)
T ss_pred cccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHH
Confidence 689999999999999943 244568999999999999999998876
No 145
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=96.43 E-value=0.021 Score=53.10 Aligned_cols=58 Identities=21% Similarity=0.214 Sum_probs=35.2
Q ss_pred CCCHHHHH-HHHHHHhcCCeEEEEecccCC--C---hhhHHHHHhhCCCCCCCcEEEEecCChhHH
Q 040913 245 GEDYKLKK-SILRDFLTNKKYFIALDDVCH--N---IEIWDDLEEVLPDNQNGSRVLITVINPSLL 304 (425)
Q Consensus 245 ~~~~~~l~-~~l~~~l~~kr~LlVLDdvw~--~---~~~~~~l~~~l~~~~~gskIivTTR~~~va 304 (425)
..+-.+.+ -.|.+.|..+.=|++||.--. + ....-.+..-+... |..|+++|.+-+..
T Consensus 139 ~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~e--g~tIl~vtHDL~~v 202 (254)
T COG1121 139 ELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQE--GKTVLMVTHDLGLV 202 (254)
T ss_pred ccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHC--CCEEEEEeCCcHHh
Confidence 33444443 456677888999999997531 1 12333333333332 88899999886654
No 146
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=96.38 E-value=0.029 Score=58.74 Aligned_cols=133 Identities=8% Similarity=-0.049 Sum_probs=73.4
Q ss_pred CCcccchhhHHHHHHHHhcCCCCcEEEEEEecCCCchHHHHHHhhcCccccc---cccchHHH-HHHHHHHhCCCCC-CC
Q 040913 167 LDISEFERAREEWFDLLIEGPIGLSVVAILDSSGFDKTAFAADTYNNNHVKF---YFDCLAWI-LDDIIRSLMPPSR-VT 241 (425)
Q Consensus 167 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLa~~v~~~~~~~~---~F~~~~wv-~~~il~~l~~~~~-~~ 241 (425)
.+++|-+..+..|.+++..+. -.+.+-++|+.|+||||+|+.+.+.--... .++|..-. -+.|...-..... ..
T Consensus 16 ~diiGqe~iv~~L~~~i~~~~-i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~C~~i~~~~~~dv~~id 94 (563)
T PRK06647 16 NSLEGQDFVVETLKHSIESNK-IANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSSCKSIDNDNSLDVIEID 94 (563)
T ss_pred HHccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchHHHHHHcCCCCCeEEec
Confidence 468999999999999998754 355678999999999999998876321110 11110000 0111110000000 00
Q ss_pred ccCCCCHHHHHHHH---HH-HhcCCeEEEEecccCC-ChhhHHHHHhhCCCCCCCcEEEEecCC
Q 040913 242 VIIGEDYKLKKSIL---RD-FLTNKKYFIALDDVCH-NIEIWDDLEEVLPDNQNGSRVLITVIN 300 (425)
Q Consensus 242 ~~~~~~~~~l~~~l---~~-~l~~kr~LlVLDdvw~-~~~~~~~l~~~l~~~~~gskIivTTR~ 300 (425)
+......+++.+.. .. -..+++-++|+|++.. +...++.+...+..-...+.+|.+|..
T Consensus 95 gas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte 158 (563)
T PRK06647 95 GASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTE 158 (563)
T ss_pred CcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCC
Confidence 01112333333322 11 1235667899999852 446777787777665556666655533
No 147
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.36 E-value=0.0023 Score=60.09 Aligned_cols=25 Identities=24% Similarity=0.232 Sum_probs=21.7
Q ss_pred CcEEEEEEecCCCchHHHHHHhhcC
Q 040913 189 GLSVVAILDSSGFDKTAFAADTYNN 213 (425)
Q Consensus 189 ~~~vi~IvG~gGvGKTtLa~~v~~~ 213 (425)
+..-+.++|.+|+|||.||.++.+.
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~ 128 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNE 128 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHH
Confidence 3556789999999999999999984
No 148
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=96.34 E-value=0.033 Score=52.72 Aligned_cols=126 Identities=14% Similarity=0.048 Sum_probs=70.0
Q ss_pred hHHHHHHHHhcCCCCcEEEEEEecCCCchHHHHHHhhcCccccc---ccc-chHHH---HHHHHHHhCCCCCCC---ccC
Q 040913 175 AREEWFDLLIEGPIGLSVVAILDSSGFDKTAFAADTYNNNHVKF---YFD-CLAWI---LDDIIRSLMPPSRVT---VII 244 (425)
Q Consensus 175 ~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLa~~v~~~~~~~~---~F~-~~~wv---~~~il~~l~~~~~~~---~~~ 244 (425)
..+.++..|.... ...-++|+|..|.|||||.+.+.....-.. .|+ ..+-+ ..++...+..-.... ..+
T Consensus 97 ~~~~~l~~l~~~~-~~~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~~~~r~~ 175 (270)
T TIGR02858 97 AADKLLPYLVRNN-RVLNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVGIVDERSEIAGCVNGVPQHDVGIRTD 175 (270)
T ss_pred cHHHHHHHHHhCC-CeeEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEeecchhHHHHHHHhccccccccccccc
Confidence 4455555565432 356789999999999999999987322110 121 11111 234433322111110 011
Q ss_pred CCCHHHHHHHHHHHhc-CCeEEEEecccCCChhhHHHHHhhCCCCCCCcEEEEecCChhHHH
Q 040913 245 GEDYKLKKSILRDFLT-NKKYFIALDDVCHNIEIWDDLEEVLPDNQNGSRVLITVINPSLLT 305 (425)
Q Consensus 245 ~~~~~~l~~~l~~~l~-~kr~LlVLDdvw~~~~~~~~l~~~l~~~~~gskIivTTR~~~va~ 305 (425)
..+.......+...+. ...-++++|.+- ..+.+..+...+. .|..||+||.+..+..
T Consensus 176 v~~~~~k~~~~~~~i~~~~P~villDE~~-~~e~~~~l~~~~~---~G~~vI~ttH~~~~~~ 233 (270)
T TIGR02858 176 VLDGCPKAEGMMMLIRSMSPDVIVVDEIG-REEDVEALLEALH---AGVSIIATAHGRDVED 233 (270)
T ss_pred ccccchHHHHHHHHHHhCCCCEEEEeCCC-cHHHHHHHHHHHh---CCCEEEEEechhHHHH
Confidence 1111111222333333 477899999997 7776776666653 4788999999877643
No 149
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=96.33 E-value=0.0059 Score=55.27 Aligned_cols=73 Identities=15% Similarity=0.034 Sum_probs=42.7
Q ss_pred CcEEEEEEecCCCchHHHHHHhhcCccccccccchHH-----H-HHHHHHHhCCCCCCCccCCCCHHHHHHHHHHHhcCC
Q 040913 189 GLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAW-----I-LDDIIRSLMPPSRVTVIIGEDYKLKKSILRDFLTNK 262 (425)
Q Consensus 189 ~~~vi~IvG~gGvGKTtLa~~v~~~~~~~~~F~~~~w-----v-~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~k 262 (425)
.+.+|+|-|.+|+||||+|+.+++ .++..+-..+- . ....-..-....+-..+...+.+-+.+.|...++|+
T Consensus 7 ~~iiIgIaG~SgSGKTTva~~l~~--~~~~~~~~~I~~D~YYk~~~~~~~~~~~~~n~d~p~A~D~dLl~~~L~~L~~g~ 84 (218)
T COG0572 7 KVIIIGIAGGSGSGKTTVAKELSE--QLGVEKVVVISLDDYYKDQSHLPFEERNKINYDHPEAFDLDLLIEHLKDLKQGK 84 (218)
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHH--HhCcCcceEeeccccccchhhcCHhhcCCcCccChhhhcHHHHHHHHHHHHcCC
Confidence 468999999999999999999988 33322111100 0 000000000001000344567788888888888887
Q ss_pred e
Q 040913 263 K 263 (425)
Q Consensus 263 r 263 (425)
.
T Consensus 85 ~ 85 (218)
T COG0572 85 P 85 (218)
T ss_pred c
Confidence 7
No 150
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.32 E-value=0.0038 Score=58.16 Aligned_cols=38 Identities=16% Similarity=0.048 Sum_probs=26.3
Q ss_pred HHHHHHHHhcCCCCcEEEEEEecCCCchHHHHHHhhcC
Q 040913 176 REEWFDLLIEGPIGLSVVAILDSSGFDKTAFAADTYNN 213 (425)
Q Consensus 176 ~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLa~~v~~~ 213 (425)
+..+.+...........+.++|.+|+|||+||..+.+.
T Consensus 85 l~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~ 122 (244)
T PRK07952 85 LSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNE 122 (244)
T ss_pred HHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHH
Confidence 33444444332223456789999999999999999984
No 151
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=96.29 E-value=0.031 Score=58.59 Aligned_cols=46 Identities=15% Similarity=0.009 Sum_probs=38.1
Q ss_pred CCCcccchhhHHHHHHHHhcCCCCcEEEEEEecCCCchHHHHHHhhc
Q 040913 166 RLDISEFERAREEWFDLLIEGPIGLSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 166 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
-.+++|.+...+.+.+++..+. -.+.+-++|+.|+||||+|+.+.+
T Consensus 15 f~~viGq~~v~~~L~~~i~~~~-~~hayLf~Gp~GtGKTt~Ak~lAk 60 (559)
T PRK05563 15 FEDVVGQEHITKTLKNAIKQGK-ISHAYLFSGPRGTGKTSAAKIFAK 60 (559)
T ss_pred HHhccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHH
Confidence 3578999999999999998764 345677899999999999988755
No 152
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=96.28 E-value=0.033 Score=57.66 Aligned_cols=132 Identities=9% Similarity=-0.008 Sum_probs=73.4
Q ss_pred CCCcccchhhHHHHHHHHhcCCCCcEEEEEEecCCCchHHHHHHhhcCc------cccccccchHHHHHHHHHHhCCCCC
Q 040913 166 RLDISEFERAREEWFDLLIEGPIGLSVVAILDSSGFDKTAFAADTYNNN------HVKFYFDCLAWILDDIIRSLMPPSR 239 (425)
Q Consensus 166 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLa~~v~~~~------~~~~~F~~~~wv~~~il~~l~~~~~ 239 (425)
-.+++|-+...+.+...+..+. -.++.-++|+.|+||||+|+.+.+.- ....+..|.... .+........-
T Consensus 13 fdeiiGqe~v~~~L~~~I~~gr-l~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~--~~~~~~h~dv~ 89 (535)
T PRK08451 13 FDELIGQESVSKTLSLALDNNR-LAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQ--SALENRHIDII 89 (535)
T ss_pred HHHccCcHHHHHHHHHHHHcCC-CCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHH--HHhhcCCCeEE
Confidence 3568999999999999887664 34567899999999999998765521 111111111110 00000000000
Q ss_pred C-CccCCCCHHHHHHHHHHH----hcCCeEEEEecccCC-ChhhHHHHHhhCCCCCCCcEEEEecCC
Q 040913 240 V-TVIIGEDYKLKKSILRDF----LTNKKYFIALDDVCH-NIEIWDDLEEVLPDNQNGSRVLITVIN 300 (425)
Q Consensus 240 ~-~~~~~~~~~~l~~~l~~~----l~~kr~LlVLDdvw~-~~~~~~~l~~~l~~~~~gskIivTTR~ 300 (425)
. ........+++.+.+... ..+++-++|+|++.. +.+..+.+...+..-...+++|++|.+
T Consensus 90 eldaas~~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FIL~ttd 156 (535)
T PRK08451 90 EMDAASNRGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILATTD 156 (535)
T ss_pred EeccccccCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEEEEECC
Confidence 0 000111244444444321 125667999999962 446677777777655556776666654
No 153
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.28 E-value=0.0087 Score=54.67 Aligned_cols=115 Identities=12% Similarity=0.147 Sum_probs=58.1
Q ss_pred cEEEEEEecCCCchHHHHHHhhcCccc--cccccchHHH----HHHHHHHhCCCCCCCccCCCCHHHHHHHHHHHh--cC
Q 040913 190 LSVVAILDSSGFDKTAFAADTYNNNHV--KFYFDCLAWI----LDDIIRSLMPPSRVTVIIGEDYKLKKSILRDFL--TN 261 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~~~~~--~~~F~~~~wv----~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~l--~~ 261 (425)
.+++.|+|+.|.|||||.+.+...... ...|-..... +..+...+........ ...+...-...+...+ ..
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~~~~la~~G~~v~a~~~~~~~~d~i~~~l~~~~si~~-~~S~f~~el~~l~~~l~~~~ 107 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVALIVFLAHIGSFVPADSATIGLVDKIFTRMSSRESVSS-GQSAFMIDLYQVSKALRLAT 107 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHHHHHHHhCCCeeEcCCcEEeeeeeeeeeeCCccChhh-ccchHHHHHHHHHHHHHhCC
Confidence 478899999999999999887632111 0111100001 2333333333222110 1112222223333332 36
Q ss_pred CeEEEEecccCCChh--h-----HHHHHhhCCCCCCCcEEEEecCChhHHH
Q 040913 262 KKYFIALDDVCHNIE--I-----WDDLEEVLPDNQNGSRVLITVINPSLLT 305 (425)
Q Consensus 262 kr~LlVLDdvw~~~~--~-----~~~l~~~l~~~~~gskIivTTR~~~va~ 305 (425)
++-|++||..-...+ . +..+......+..+..+|+||.+.+.+.
T Consensus 108 ~~slvllDE~~~gtd~~~~~~~~~ail~~l~~~~~~~~~vli~TH~~~l~~ 158 (213)
T cd03281 108 RRSLVLIDEFGKGTDTEDGAGLLIATIEHLLKRGPECPRVIVSTHFHELFN 158 (213)
T ss_pred CCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEcChHHHHH
Confidence 789999999862221 1 1222222222223468999999988775
No 154
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.26 E-value=0.032 Score=59.11 Aligned_cols=130 Identities=9% Similarity=0.055 Sum_probs=72.0
Q ss_pred CCcccchhhHHHHHHHHhcCCCCcEEEEEEecCCCchHHHHHHhhcCcccccc-----ccchHHHHHHHHHHhCCCCCCC
Q 040913 167 LDISEFERAREEWFDLLIEGPIGLSVVAILDSSGFDKTAFAADTYNNNHVKFY-----FDCLAWILDDIIRSLMPPSRVT 241 (425)
Q Consensus 167 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLa~~v~~~~~~~~~-----F~~~~wv~~~il~~l~~~~~~~ 241 (425)
.+++|.+.....|..++..+. -.+.+-++|+.|+||||+|+.+.+.--.... -.|. ..+..+.+.......
T Consensus 16 ~~liGq~~i~~~L~~~l~~~r-l~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg---~C~~C~~i~~g~h~D 91 (620)
T PRK14948 16 DELVGQEAIATTLKNALISNR-IAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCG---KCELCRAIAAGNALD 91 (620)
T ss_pred hhccChHHHHHHHHHHHHcCC-CCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCc---ccHHHHHHhcCCCcc
Confidence 568899999999999888754 2345778999999999999988763211100 0111 001111111111000
Q ss_pred -----ccCCCCHHHHHHHHHHH----hcCCeEEEEecccCC-ChhhHHHHHhhCCCCCCCcEEEEecCC
Q 040913 242 -----VIIGEDYKLKKSILRDF----LTNKKYFIALDDVCH-NIEIWDDLEEVLPDNQNGSRVLITVIN 300 (425)
Q Consensus 242 -----~~~~~~~~~l~~~l~~~----l~~kr~LlVLDdvw~-~~~~~~~l~~~l~~~~~gskIivTTR~ 300 (425)
.......+.+.+.+... ..+++-++|+|++.. +.+.++.|...+..-...+.+|++|.+
T Consensus 92 ~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~ 160 (620)
T PRK14948 92 VIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTD 160 (620)
T ss_pred EEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCC
Confidence 00112233333333221 125666899999962 446777787777654445555554443
No 155
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=96.26 E-value=0.021 Score=57.48 Aligned_cols=22 Identities=23% Similarity=0.218 Sum_probs=19.9
Q ss_pred cEEEEEEecCCCchHHHHHHhh
Q 040913 190 LSVVAILDSSGFDKTAFAADTY 211 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~ 211 (425)
-.+++|+|+.|+||||||+.+.
T Consensus 362 G~~lgIIGPSgSGKSTLaR~lv 383 (580)
T COG4618 362 GEALGIIGPSGSGKSTLARLLV 383 (580)
T ss_pred CceEEEECCCCccHHHHHHHHH
Confidence 4589999999999999999976
No 156
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=96.25 E-value=0.046 Score=47.62 Aligned_cols=129 Identities=16% Similarity=0.072 Sum_probs=69.7
Q ss_pred cchhhHHHHHHHHhcCCCCcEEEEEEecCCCchHHHHHHhhcCccccccccc----hHHHHHHHHHHhCCCCCC--Ccc-
Q 040913 171 EFERAREEWFDLLIEGPIGLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDC----LAWILDDIIRSLMPPSRV--TVI- 243 (425)
Q Consensus 171 Gr~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLa~~v~~~~~~~~~F~~----~~wv~~~il~~l~~~~~~--~~~- 243 (425)
|-++..+.|.+.+..+. -...+-++|..|+||+|+|..+.+.---...... .-. -+.+...-...... +..
T Consensus 1 gq~~~~~~L~~~~~~~~-l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~-c~~~~~~~~~d~~~~~~~~~ 78 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSGR-LPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRS-CRRIEEGNHPDFIIIKPDKK 78 (162)
T ss_dssp S-HHHHHHHHHHHHCTC---SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHH-HHHHHTT-CTTEEEEETTTS
T ss_pred CcHHHHHHHHHHHHcCC-cceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHH-HHHHHhccCcceEEEecccc
Confidence 44556666777666553 3456789999999999999776552111111100 000 01111100000000 000
Q ss_pred -CCCCHHHHHHHHHHHhc-----CCeEEEEecccCC-ChhhHHHHHhhCCCCCCCcEEEEecCChh
Q 040913 244 -IGEDYKLKKSILRDFLT-----NKKYFIALDDVCH-NIEIWDDLEEVLPDNQNGSRVLITVINPS 302 (425)
Q Consensus 244 -~~~~~~~l~~~l~~~l~-----~kr~LlVLDdvw~-~~~~~~~l~~~l~~~~~gskIivTTR~~~ 302 (425)
.....+++. .+.+.+. ++.-++|+||+.. +.+..+.+...+-.-..++.+|++|++.+
T Consensus 79 ~~~i~i~~ir-~i~~~~~~~~~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~t~~~~ 143 (162)
T PF13177_consen 79 KKSIKIDQIR-EIIEFLSLSPSEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILITNNPS 143 (162)
T ss_dssp SSSBSHHHHH-HHHHHCTSS-TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEEES-GG
T ss_pred cchhhHHHHH-HHHHHHHHHHhcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEEECChH
Confidence 123455555 4444442 3566899999963 45788888888877677899888888755
No 157
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=96.21 E-value=0.0098 Score=59.09 Aligned_cols=50 Identities=10% Similarity=-0.142 Sum_probs=32.9
Q ss_pred CCCCCCcccchhhHHHH-HHHH-hcCCCCcEEEEEEecCCCchHHHHHHhhc
Q 040913 163 GQPRLDISEFERAREEW-FDLL-IEGPIGLSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 163 ~~~~~~~vGr~~~~~~l-~~~L-~~~~~~~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
+..++-++|-......- ...+ ..+......+-|+|..|.|||.|++++.|
T Consensus 84 ytFdnFv~g~~N~~A~aa~~~va~~~g~~~nplfi~G~~GlGKTHLl~Aign 135 (408)
T COG0593 84 YTFDNFVVGPSNRLAYAAAKAVAENPGGAYNPLFIYGGVGLGKTHLLQAIGN 135 (408)
T ss_pred CchhheeeCCchHHHHHHHHHHHhccCCcCCcEEEECCCCCCHHHHHHHHHH
Confidence 34445556755443332 2222 22333477899999999999999999999
No 158
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=96.20 E-value=0.0036 Score=56.25 Aligned_cols=21 Identities=29% Similarity=0.371 Sum_probs=19.6
Q ss_pred EEEEEecCCCchHHHHHHhhc
Q 040913 192 VVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 192 vi~IvG~gGvGKTtLa~~v~~ 212 (425)
||+|.|.+|+||||||+.+..
T Consensus 1 IIgI~G~sgSGKTTla~~L~~ 21 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQ 21 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999999876
No 159
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=96.20 E-value=0.04 Score=48.71 Aligned_cols=22 Identities=32% Similarity=0.348 Sum_probs=19.6
Q ss_pred EEEEEecCCCchHHHHHHhhcC
Q 040913 192 VVAILDSSGFDKTAFAADTYNN 213 (425)
Q Consensus 192 vi~IvG~gGvGKTtLa~~v~~~ 213 (425)
||.|+|++|+||||+|+.+...
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~ 22 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVEN 22 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999998773
No 160
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=96.19 E-value=0.012 Score=57.34 Aligned_cols=47 Identities=13% Similarity=-0.074 Sum_probs=38.1
Q ss_pred CCcccchhhHHHHHHHHhcCCCCcEEEEEEecCCCchHHHHHHhhcC
Q 040913 167 LDISEFERAREEWFDLLIEGPIGLSVVAILDSSGFDKTAFAADTYNN 213 (425)
Q Consensus 167 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLa~~v~~~ 213 (425)
..++|....+.++.+.+..-.....-|.|+|..|+||+++|+.++..
T Consensus 6 ~~liG~S~~~~~~~~~i~~~a~~~~pVlI~GE~GtGK~~lA~~iH~~ 52 (326)
T PRK11608 6 DNLLGEANSFLEVLEQVSRLAPLDKPVLIIGERGTGKELIASRLHYL 52 (326)
T ss_pred CccEECCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHh
Confidence 45899999999998887764333455789999999999999999863
No 161
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=96.18 E-value=0.0048 Score=67.72 Aligned_cols=44 Identities=14% Similarity=0.097 Sum_probs=37.3
Q ss_pred CCcccchhhHHHHHHHHhcCCCCcEEEEEEecCCCchHHHHHHhhc
Q 040913 167 LDISEFERAREEWFDLLIEGPIGLSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 167 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
..++||+.++.++++.|.....+ -+.++|.+|+||||+|+.+.+
T Consensus 187 d~~iGr~~ei~~~i~~l~r~~~~--n~lLvG~pGvGKTal~~~La~ 230 (852)
T TIGR03345 187 DPVLGRDDEIRQMIDILLRRRQN--NPILTGEAGVGKTAVVEGLAL 230 (852)
T ss_pred CcccCCHHHHHHHHHHHhcCCcC--ceeEECCCCCCHHHHHHHHHH
Confidence 57899999999999999876522 345899999999999998887
No 162
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=96.18 E-value=0.0053 Score=62.03 Aligned_cols=54 Identities=20% Similarity=0.118 Sum_probs=39.7
Q ss_pred CCCCcccchhhHHHHHHHHhcC-----------CCCcEEEEEEecCCCchHHHHHHhhcCccccccc
Q 040913 165 PRLDISEFERAREEWFDLLIEG-----------PIGLSVVAILDSSGFDKTAFAADTYNNNHVKFYF 220 (425)
Q Consensus 165 ~~~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~IvG~gGvGKTtLa~~v~~~~~~~~~F 220 (425)
.-.++.|.+..+++|.+.+.-. -...+-+.++|++|+|||+||+.+.+ +....|
T Consensus 181 ~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~--el~~~f 245 (438)
T PTZ00361 181 SYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVAN--ETSATF 245 (438)
T ss_pred CHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHH--hhCCCE
Confidence 3456788999998888776421 12345677899999999999999998 444444
No 163
>PRK05480 uridine/cytidine kinase; Provisional
Probab=96.14 E-value=0.0044 Score=56.37 Aligned_cols=25 Identities=28% Similarity=0.399 Sum_probs=22.6
Q ss_pred CcEEEEEEecCCCchHHHHHHhhcC
Q 040913 189 GLSVVAILDSSGFDKTAFAADTYNN 213 (425)
Q Consensus 189 ~~~vi~IvG~gGvGKTtLa~~v~~~ 213 (425)
...+|+|.|.+|+|||||++.+...
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~~ 29 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYEE 29 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 4679999999999999999999873
No 164
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=96.13 E-value=0.0048 Score=57.62 Aligned_cols=47 Identities=19% Similarity=0.181 Sum_probs=39.1
Q ss_pred CCCcccchhhHHHHHHHHhcC---CCCcEEEEEEecCCCchHHHHHHhhc
Q 040913 166 RLDISEFERAREEWFDLLIEG---PIGLSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 166 ~~~~vGr~~~~~~l~~~L~~~---~~~~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
-.+++|.++-++++-=.+... ...+--+.++|++|.||||||.-+.+
T Consensus 25 l~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~ 74 (332)
T COG2255 25 LDEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIAN 74 (332)
T ss_pred HHHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHH
Confidence 457999999999886666543 44677889999999999999999999
No 165
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=96.13 E-value=0.0041 Score=51.32 Aligned_cols=20 Identities=25% Similarity=0.293 Sum_probs=18.8
Q ss_pred EEEEecCCCchHHHHHHhhc
Q 040913 193 VAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 193 i~IvG~gGvGKTtLa~~v~~ 212 (425)
|.|.|.+|+||||+|+.+..
T Consensus 1 I~i~G~~GsGKtTia~~L~~ 20 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAE 20 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHH
Confidence 68999999999999999888
No 166
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=96.12 E-value=0.0067 Score=56.08 Aligned_cols=26 Identities=23% Similarity=0.258 Sum_probs=23.1
Q ss_pred CCCcEEEEEEecCCCchHHHHHHhhc
Q 040913 187 PIGLSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 187 ~~~~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
.....+|+|.|..|+|||||++.+..
T Consensus 30 ~~~~~iigi~G~~GsGKTTl~~~L~~ 55 (229)
T PRK09270 30 PQRRTIVGIAGPPGAGKSTLAEFLEA 55 (229)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 34688999999999999999998876
No 167
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=96.11 E-value=0.012 Score=56.88 Aligned_cols=127 Identities=20% Similarity=0.338 Sum_probs=70.0
Q ss_pred CCCccc---chhhHHHHHHHHhcCCCCcEEEEEEecCCCchHHHHHHh----------hcCcccc-cccc----------
Q 040913 166 RLDISE---FERAREEWFDLLIEGPIGLSVVAILDSSGFDKTAFAADT----------YNNNHVK-FYFD---------- 221 (425)
Q Consensus 166 ~~~~vG---r~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLa~~v----------~~~~~~~-~~F~---------- 221 (425)
+..+.| |..+..--+++|.+++ ...|++.|.+|.|||.||-+. |+.--+. ..++
T Consensus 220 ~~~vwGi~prn~eQ~~ALdlLld~d--I~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~vpvG~dIGfLPG 297 (436)
T COG1875 220 DQEVWGIRPRNAEQRVALDLLLDDD--IDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPTVPVGEDIGFLPG 297 (436)
T ss_pred chhhhccCcccHHHHHHHHHhcCCC--CCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCCcCcccccCcCCC
Confidence 334445 5555555578888776 889999999999999998543 2211111 0111
Q ss_pred -----chHHH--HHHHHHHhCCCCCCCccCCCCHHHHHHHH---------HHHhcCCe---EEEEecccCCChhhHHHHH
Q 040913 222 -----CLAWI--LDDIIRSLMPPSRVTVIIGEDYKLKKSIL---------RDFLTNKK---YFIALDDVCHNIEIWDDLE 282 (425)
Q Consensus 222 -----~~~wv--~~~il~~l~~~~~~~~~~~~~~~~l~~~l---------~~~l~~kr---~LlVLDdvw~~~~~~~~l~ 282 (425)
..-|. ..+=+..+..... ...+.+...+ ..+++|+. -+||+|... +-.. .+++
T Consensus 298 ~eEeKm~PWmq~i~DnLE~L~~~~~------~~~~~l~~~l~~~~iev~alt~IRGRSl~~~FiIIDEaQ-NLTp-heik 369 (436)
T COG1875 298 TEEEKMGPWMQAIFDNLEVLFSPNE------PGDRALEEILSRGRIEVEALTYIRGRSLPDSFIIIDEAQ-NLTP-HELK 369 (436)
T ss_pred chhhhccchHHHHHhHHHHHhcccc------cchHHHHHHHhccceeeeeeeeecccccccceEEEehhh-ccCH-HHHH
Confidence 12243 3333333333322 1112222221 12345644 489999887 5422 3455
Q ss_pred hhCCCCCCCcEEEEecCChh
Q 040913 283 EVLPDNQNGSRVLITVINPS 302 (425)
Q Consensus 283 ~~l~~~~~gskIivTTR~~~ 302 (425)
..+...+.||||+.|---.+
T Consensus 370 TiltR~G~GsKIVl~gd~aQ 389 (436)
T COG1875 370 TILTRAGEGSKIVLTGDPAQ 389 (436)
T ss_pred HHHHhccCCCEEEEcCCHHH
Confidence 56666678999998864433
No 168
>PRK08233 hypothetical protein; Provisional
Probab=96.10 E-value=0.0046 Score=54.59 Aligned_cols=24 Identities=21% Similarity=0.254 Sum_probs=21.6
Q ss_pred cEEEEEEecCCCchHHHHHHhhcC
Q 040913 190 LSVVAILDSSGFDKTAFAADTYNN 213 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~~ 213 (425)
..+|+|.|.+|+||||||+.+...
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~ 26 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHK 26 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhh
Confidence 478999999999999999999863
No 169
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=96.10 E-value=0.0076 Score=55.89 Aligned_cols=27 Identities=15% Similarity=0.198 Sum_probs=22.9
Q ss_pred CCcEEEEEEecCCCchHHHHHHhhcCc
Q 040913 188 IGLSVVAILDSSGFDKTAFAADTYNNN 214 (425)
Q Consensus 188 ~~~~vi~IvG~gGvGKTtLa~~v~~~~ 214 (425)
..+.+|.++||+|+||||..|.++.+-
T Consensus 17 ~~p~~ilVvGMAGSGKTTF~QrL~~hl 43 (366)
T KOG1532|consen 17 QRPVIILVVGMAGSGKTTFMQRLNSHL 43 (366)
T ss_pred cCCcEEEEEecCCCCchhHHHHHHHHH
Confidence 346788889999999999999998753
No 170
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=96.10 E-value=0.04 Score=58.84 Aligned_cols=132 Identities=11% Similarity=0.070 Sum_probs=71.9
Q ss_pred CCcccchhhHHHHHHHHhcCCCCcEEEEEEecCCCchHHHHHHhhcCccccc---cc-cchHHHHHHHHHHhCCCCCCCc
Q 040913 167 LDISEFERAREEWFDLLIEGPIGLSVVAILDSSGFDKTAFAADTYNNNHVKF---YF-DCLAWILDDIIRSLMPPSRVTV 242 (425)
Q Consensus 167 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLa~~v~~~~~~~~---~F-~~~~wv~~~il~~l~~~~~~~~ 242 (425)
.+++|.+...+.|.+++..+. -.+.+-++|+.|+||||+|+.+.+.--... .+ .|..- . .........-.
T Consensus 18 ~dIiGQe~~v~~L~~aI~~~r-l~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C-~----~~~~~~~Dvie 91 (725)
T PRK07133 18 DDIVGQDHIVQTLKNIIKSNK-ISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQEC-I----ENVNNSLDIIE 91 (725)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHH-H----HhhcCCCcEEE
Confidence 468899999999999998754 345667899999999999988765211100 01 11100 0 00011000000
Q ss_pred cC---CCCHH---HHHHHHHHH-hcCCeEEEEecccCC-ChhhHHHHHhhCCCCCCCcEEE-EecCChhHH
Q 040913 243 II---GEDYK---LKKSILRDF-LTNKKYFIALDDVCH-NIEIWDDLEEVLPDNQNGSRVL-ITVINPSLL 304 (425)
Q Consensus 243 ~~---~~~~~---~l~~~l~~~-l~~kr~LlVLDdvw~-~~~~~~~l~~~l~~~~~gskIi-vTTR~~~va 304 (425)
.. ....+ ++.+.+... ..+++-++|+|++.. +...++.+...+-.-...+.+| +||....+.
T Consensus 92 idaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~KLl 162 (725)
T PRK07133 92 MDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHKIP 162 (725)
T ss_pred EeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhhhh
Confidence 00 11222 233222211 235677999999853 4467777777766544455544 555444443
No 171
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=96.06 E-value=0.0049 Score=55.99 Aligned_cols=24 Identities=29% Similarity=0.313 Sum_probs=22.0
Q ss_pred CcEEEEEEecCCCchHHHHHHhhc
Q 040913 189 GLSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 189 ~~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
...+|+|+|++|+|||||++.+..
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~ 28 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYE 28 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999999986
No 172
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=96.04 E-value=0.014 Score=51.72 Aligned_cols=115 Identities=15% Similarity=0.104 Sum_probs=60.4
Q ss_pred cEEEEEEecCCCchHHHHHHhhcCcccc-c----------cccchHHH-----HHHHHHHhCCCCCCC-ccCCCC-HHHH
Q 040913 190 LSVVAILDSSGFDKTAFAADTYNNNHVK-F----------YFDCLAWI-----LDDIIRSLMPPSRVT-VIIGED-YKLK 251 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~~~~~~-~----------~F~~~~wv-----~~~il~~l~~~~~~~-~~~~~~-~~~l 251 (425)
-.+++|+|..|.|||||.+.+..-.... . .++...|. +..++..+.-..... .....+ -+..
T Consensus 25 G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~G~~q 104 (180)
T cd03214 25 GEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARKIAYVPQALELLGLAHLADRPFNELSGGERQ 104 (180)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCHHHHH
Confidence 4689999999999999999998642110 0 11111111 112344433221100 111122 2333
Q ss_pred HHHHHHHhcCCeEEEEecccCC--ChhhHHHHHhhCCCC-CC-CcEEEEecCChhHH
Q 040913 252 KSILRDFLTNKKYFIALDDVCH--NIEIWDDLEEVLPDN-QN-GSRVLITVINPSLL 304 (425)
Q Consensus 252 ~~~l~~~l~~kr~LlVLDdvw~--~~~~~~~l~~~l~~~-~~-gskIivTTR~~~va 304 (425)
.-.+...+-...-+++||+.-. +....+.+...+..- .. |..||++|.+....
T Consensus 105 rl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~ 161 (180)
T cd03214 105 RVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLA 161 (180)
T ss_pred HHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 3445666667778999999751 223344444444321 22 66788888775543
No 173
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.03 E-value=0.025 Score=49.96 Aligned_cols=115 Identities=17% Similarity=0.150 Sum_probs=60.1
Q ss_pred cEEEEEEecCCCchHHHHHHhhcCc-cc--ccc---cc--chHHH-HHHHHHHhCCCCC--CCccCCCCH-HHHHHHHHH
Q 040913 190 LSVVAILDSSGFDKTAFAADTYNNN-HV--KFY---FD--CLAWI-LDDIIRSLMPPSR--VTVIIGEDY-KLKKSILRD 257 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~~~-~~--~~~---F~--~~~wv-~~~il~~l~~~~~--~~~~~~~~~-~~l~~~l~~ 257 (425)
-.+++|+|+.|+|||||.+.+..+. ++ ... |. ...|+ ..+.+..+.-... .......+. +...-.+..
T Consensus 21 G~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~~q~~~l~~~~L~~~~~~~~~~~LSgGq~qrl~lar 100 (176)
T cd03238 21 NVLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFIDQLQFLIDVGLGYLTLGQKLSTLSGGELQRVKLAS 100 (176)
T ss_pred CCEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEEhHHHHHHHcCCCccccCCCcCcCCHHHHHHHHHHH
Confidence 4689999999999999999986321 11 111 10 12233 3345555553211 111122222 222333444
Q ss_pred HhcCC--eEEEEecccCC--ChhhHHHHHhhCCC-CCCCcEEEEecCChhHH
Q 040913 258 FLTNK--KYFIALDDVCH--NIEIWDDLEEVLPD-NQNGSRVLITVINPSLL 304 (425)
Q Consensus 258 ~l~~k--r~LlVLDdvw~--~~~~~~~l~~~l~~-~~~gskIivTTR~~~va 304 (425)
.+-.+ .-+++||..-. +......+...+.. ...|..||++|.+.+..
T Consensus 101 al~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~ 152 (176)
T cd03238 101 ELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVL 152 (176)
T ss_pred HHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHH
Confidence 55555 67888898741 22333334333332 12467788888887654
No 174
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=96.01 E-value=0.028 Score=54.90 Aligned_cols=45 Identities=18% Similarity=-0.044 Sum_probs=34.6
Q ss_pred cccchhhHHHHHHHHhcCCCCcEEEEEEecCCCchHHHHHHhhcC
Q 040913 169 ISEFERAREEWFDLLIEGPIGLSVVAILDSSGFDKTAFAADTYNN 213 (425)
Q Consensus 169 ~vGr~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLa~~v~~~ 213 (425)
++|....+.++.+.+..-.....-|.|.|..|+||+++|+.+++.
T Consensus 1 liG~S~~m~~~~~~~~~~a~~~~pVLI~GE~GtGK~~lAr~iH~~ 45 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAPLDRPVLIIGERGTGKELIAARLHYL 45 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHh
Confidence 467777777877777654333455789999999999999999864
No 175
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.99 E-value=0.11 Score=51.62 Aligned_cols=24 Identities=21% Similarity=0.286 Sum_probs=20.8
Q ss_pred CcEEEEEEecCCCchHHHHHHhhc
Q 040913 189 GLSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 189 ~~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
..++|+++|++|+||||++..+..
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~ 263 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAW 263 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHH
Confidence 357999999999999999888754
No 176
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=95.98 E-value=0.064 Score=52.10 Aligned_cols=40 Identities=10% Similarity=0.071 Sum_probs=33.2
Q ss_pred hhhHHHHHHHHhcCC-CCcEEEEEEecCCCchHHHHHHhhc
Q 040913 173 ERAREEWFDLLIEGP-IGLSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 173 ~~~~~~l~~~L~~~~-~~~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
+.-.+.|.+.|...+ ....+|+|.|.-|+||||+.+.+.+
T Consensus 2 ~~~a~~la~~I~~~~~~~~~~IgL~G~WGsGKSs~l~~l~~ 42 (325)
T PF07693_consen 2 KPYAKALAEIIKNPDSDDPFVIGLYGEWGSGKSSFLNMLKE 42 (325)
T ss_pred hHHHHHHHHHHhccCCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 445677788887764 6789999999999999999998876
No 177
>PTZ00301 uridine kinase; Provisional
Probab=95.98 E-value=0.0055 Score=55.80 Aligned_cols=23 Identities=22% Similarity=0.394 Sum_probs=20.6
Q ss_pred cEEEEEEecCCCchHHHHHHhhc
Q 040913 190 LSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
..+|+|.|.+|+||||||+.+.+
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~ 25 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVS 25 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHH
Confidence 57999999999999999987765
No 178
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=95.97 E-value=0.011 Score=54.53 Aligned_cols=25 Identities=20% Similarity=0.094 Sum_probs=21.9
Q ss_pred CCcEEEEEEecCCCchHHHHHHhhc
Q 040913 188 IGLSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 188 ~~~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
..-.++.|+|.+|+|||+|+.++.-
T Consensus 17 ~~g~i~~i~G~~GsGKT~l~~~l~~ 41 (235)
T cd01123 17 ETGSITEIFGEFGSGKTQLCHQLAV 41 (235)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4568999999999999999998864
No 179
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=95.97 E-value=0.041 Score=53.28 Aligned_cols=130 Identities=12% Similarity=0.108 Sum_probs=70.1
Q ss_pred CcccchhhHHHHHHHHhcCCCCcEEEEEEecCCCchHHHHHHhhcCccccc---cccchHHHHHHHHHHhCCCCCCC---
Q 040913 168 DISEFERAREEWFDLLIEGPIGLSVVAILDSSGFDKTAFAADTYNNNHVKF---YFDCLAWILDDIIRSLMPPSRVT--- 241 (425)
Q Consensus 168 ~~vGr~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLa~~v~~~~~~~~---~F~~~~wv~~~il~~l~~~~~~~--- 241 (425)
.++|-+....++..+..........+-+.|++|+||||+|..+.+.---.. ...+... .....+.......
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~---~~~~~~~~~~~~d~le 78 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHC---RSCKLIPAGNHPDFLE 78 (325)
T ss_pred CcccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccch---hhhhHHhhcCCCceEE
Confidence 466777888888888886544455688999999999999988776211000 0000000 0000000000000
Q ss_pred ----ccCCCC-HHHHHHHHHHHh-----cCCeEEEEecccCC-ChhhHHHHHhhCCCCCCCcEEEEecCC
Q 040913 242 ----VIIGED-YKLKKSILRDFL-----TNKKYFIALDDVCH-NIEIWDDLEEVLPDNQNGSRVLITVIN 300 (425)
Q Consensus 242 ----~~~~~~-~~~l~~~l~~~l-----~~kr~LlVLDdvw~-~~~~~~~l~~~l~~~~~gskIivTTR~ 300 (425)
+....+ ..+....+.+.. .++.-++++|++.. +.+.-+.+...+......+.+|++|..
T Consensus 79 l~~s~~~~~~i~~~~vr~~~~~~~~~~~~~~~kviiidead~mt~~A~nallk~lEep~~~~~~il~~n~ 148 (325)
T COG0470 79 LNPSDLRKIDIIVEQVRELAEFLSESPLEGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTRFILITND 148 (325)
T ss_pred ecccccCCCcchHHHHHHHHHHhccCCCCCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeEEEEEcCC
Confidence 011111 222233333332 14678999999962 234556666666666667888888873
No 180
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=95.96 E-value=0.021 Score=59.74 Aligned_cols=50 Identities=18% Similarity=-0.053 Sum_probs=40.2
Q ss_pred CCCCCcccchhhHHHHHHHHhcCCCCcEEEEEEecCCCchHHHHHHhhcC
Q 040913 164 QPRLDISEFERAREEWFDLLIEGPIGLSVVAILDSSGFDKTAFAADTYNN 213 (425)
Q Consensus 164 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLa~~v~~~ 213 (425)
.....++|....+.++.+.+..-......|.|+|..|+|||++|+.+++.
T Consensus 193 ~~~~~liG~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~lA~~ih~~ 242 (534)
T TIGR01817 193 GKEDGIIGKSPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIHYL 242 (534)
T ss_pred CccCceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCccHHHHHHHHHHh
Confidence 34567999999999998888754333445679999999999999999974
No 181
>PRK06547 hypothetical protein; Provisional
Probab=95.96 E-value=0.01 Score=52.26 Aligned_cols=25 Identities=32% Similarity=0.311 Sum_probs=22.4
Q ss_pred CcEEEEEEecCCCchHHHHHHhhcC
Q 040913 189 GLSVVAILDSSGFDKTAFAADTYNN 213 (425)
Q Consensus 189 ~~~vi~IvG~gGvGKTtLa~~v~~~ 213 (425)
...+|.|.|++|+||||+|+.+.+.
T Consensus 14 ~~~~i~i~G~~GsGKTt~a~~l~~~ 38 (172)
T PRK06547 14 GMITVLIDGRSGSGKTTLAGALAAR 38 (172)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999998763
No 182
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=95.94 E-value=0.035 Score=50.81 Aligned_cols=58 Identities=16% Similarity=0.294 Sum_probs=36.2
Q ss_pred HHHHHHHHHHhcCCeEEEEecccCC--ChhhHHHHHhhCCC--CCCCcEEEEecCChhHHHH
Q 040913 249 KLKKSILRDFLTNKKYFIALDDVCH--NIEIWDDLEEVLPD--NQNGSRVLITVINPSLLTS 306 (425)
Q Consensus 249 ~~l~~~l~~~l~~kr~LlVLDdvw~--~~~~~~~l~~~l~~--~~~gskIivTTR~~~va~~ 306 (425)
++-.-.+.+.|-...-+|+-|.--. +...=+.+...+.. ...|..||+.|.+..+|..
T Consensus 147 qqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~ 208 (226)
T COG1136 147 QQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKY 208 (226)
T ss_pred HHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHh
Confidence 4444567777788888899997531 11222233333332 2347889999999999873
No 183
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=95.93 E-value=0.026 Score=49.89 Aligned_cols=24 Identities=21% Similarity=0.192 Sum_probs=21.4
Q ss_pred cEEEEEEecCCCchHHHHHHhhcC
Q 040913 190 LSVVAILDSSGFDKTAFAADTYNN 213 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~~ 213 (425)
-.+++|+|..|.|||||++.+..-
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~ 51 (178)
T cd03247 28 GEKIALLGRSGSGKSTLLQLLTGD 51 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcc
Confidence 457999999999999999999874
No 184
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=95.92 E-value=0.044 Score=54.07 Aligned_cols=24 Identities=25% Similarity=0.335 Sum_probs=20.1
Q ss_pred CcEEEEEEecCCCchHH-HHHHhhc
Q 040913 189 GLSVVAILDSSGFDKTA-FAADTYN 212 (425)
Q Consensus 189 ~~~vi~IvG~gGvGKTt-La~~v~~ 212 (425)
+-++|.+||+.|+|||| ||+....
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar 226 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAAR 226 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHH
Confidence 37999999999999998 7776544
No 185
>PRK13531 regulatory ATPase RavA; Provisional
Probab=95.91 E-value=0.016 Score=58.85 Aligned_cols=40 Identities=20% Similarity=0.152 Sum_probs=35.4
Q ss_pred cccchhhHHHHHHHHhcCCCCcEEEEEEecCCCchHHHHHHhhc
Q 040913 169 ISEFERAREEWFDLLIEGPIGLSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 169 ~vGr~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
++|+++.++.+...+..+. -|-+.|++|+|||+||+.+..
T Consensus 22 i~gre~vI~lll~aalag~----hVLL~GpPGTGKT~LAraLa~ 61 (498)
T PRK13531 22 LYERSHAIRLCLLAALSGE----SVFLLGPPGIAKSLIARRLKF 61 (498)
T ss_pred ccCcHHHHHHHHHHHccCC----CEEEECCCChhHHHHHHHHHH
Confidence 8999999999988887753 467899999999999999987
No 186
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.89 E-value=0.0054 Score=52.49 Aligned_cols=23 Identities=17% Similarity=0.177 Sum_probs=20.6
Q ss_pred cEEEEEEecCCCchHHHHHHhhc
Q 040913 190 LSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
..-|.|.||+|+|||||++.+.+
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e 27 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAE 27 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHH
Confidence 34588999999999999999987
No 187
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=95.88 E-value=0.022 Score=52.06 Aligned_cols=23 Identities=17% Similarity=0.121 Sum_probs=20.8
Q ss_pred cEEEEEEecCCCchHHHHHHhhc
Q 040913 190 LSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
-.+++|+|..|+|||||.+.+..
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~G 50 (220)
T cd03263 28 GEIFGLLGHNGAGKTTTLKMLTG 50 (220)
T ss_pred CcEEEEECCCCCCHHHHHHHHhC
Confidence 45899999999999999999875
No 188
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=95.88 E-value=0.021 Score=52.36 Aligned_cols=28 Identities=18% Similarity=0.090 Sum_probs=22.7
Q ss_pred cCCCCcEEEEEEecCCCchHHHHHHhhc
Q 040913 185 EGPIGLSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 185 ~~~~~~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
.+=..-.++.|+|.+|+|||+|+.++..
T Consensus 14 GG~~~g~v~~I~G~~GsGKT~l~~~ia~ 41 (226)
T cd01393 14 GGIPTGRITEIFGEFGSGKTQLCLQLAV 41 (226)
T ss_pred CCCcCCcEEEEeCCCCCChhHHHHHHHH
Confidence 3334567999999999999999988764
No 189
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=95.85 E-value=0.049 Score=51.54 Aligned_cols=125 Identities=14% Similarity=0.091 Sum_probs=71.7
Q ss_pred CCCcccchhhHHHHHHHHhcCCCCcEEEEEEecCCCchHHHHHHhhcCccccccccchHHHHHHHHHHhCCCCCCCcc--
Q 040913 166 RLDISEFERAREEWFDLLIEGPIGLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWILDDIIRSLMPPSRVTVI-- 243 (425)
Q Consensus 166 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~~il~~l~~~~~~~~~-- 243 (425)
-.+++|.+...+-|.+.+... ..+....+|++|.|||+-|..+...---.+.|++++-- .-.....+...
T Consensus 35 ~de~~gQe~vV~~L~~a~~~~--~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~------lnaSderGisvvr 106 (346)
T KOG0989|consen 35 FDELAGQEHVVQVLKNALLRR--ILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLE------LNASDERGISVVR 106 (346)
T ss_pred HHhhcchHHHHHHHHHHHhhc--CCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhh------hcccccccccchh
Confidence 356889999999999888873 47888899999999999887766522223456654431 00000000000
Q ss_pred -CCCCHHHHHHHHHHHh--cCCe-EEEEecccCC-ChhhHHHHHhhCCCCCCCcEEEEec
Q 040913 244 -IGEDYKLKKSILRDFL--TNKK-YFIALDDVCH-NIEIWDDLEEVLPDNQNGSRVLITV 298 (425)
Q Consensus 244 -~~~~~~~l~~~l~~~l--~~kr-~LlVLDdvw~-~~~~~~~l~~~l~~~~~gskIivTT 298 (425)
...+...+........ ..+. -.||||++.. ..+.|..++..+.+....++-|..|
T Consensus 107 ~Kik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIc 166 (346)
T KOG0989|consen 107 EKIKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILIC 166 (346)
T ss_pred hhhcCHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEc
Confidence 0011111111111000 0133 3789999963 3589999998887766566644433
No 190
>PRK06762 hypothetical protein; Provisional
Probab=95.80 E-value=0.0073 Score=52.65 Aligned_cols=23 Identities=26% Similarity=0.310 Sum_probs=21.0
Q ss_pred cEEEEEEecCCCchHHHHHHhhc
Q 040913 190 LSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
..+|.|.|++|+||||+|+.+.+
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~ 24 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQE 24 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999887
No 191
>PRK12608 transcription termination factor Rho; Provisional
Probab=95.79 E-value=0.0078 Score=59.10 Aligned_cols=37 Identities=16% Similarity=0.030 Sum_probs=27.7
Q ss_pred hHHHHHHHHhcCCCCcEEEEEEecCCCchHHHHHHhhc
Q 040913 175 AREEWFDLLIEGPIGLSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 175 ~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
-..++++.+..-..+ .-+.|+|.+|+|||||++.+.+
T Consensus 119 ~~~RvID~l~PiGkG-QR~LIvG~pGtGKTTLl~~la~ 155 (380)
T PRK12608 119 LSMRVVDLVAPIGKG-QRGLIVAPPRAGKTVLLQQIAA 155 (380)
T ss_pred hhHhhhhheeecCCC-ceEEEECCCCCCHHHHHHHHHH
Confidence 345578877753322 3458999999999999999877
No 192
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.76 E-value=0.031 Score=57.44 Aligned_cols=97 Identities=18% Similarity=0.234 Sum_probs=62.4
Q ss_pred CCCCCCcccchhhHHHHHHHHhc---CC-------CCcEEEEEEecCCCchHHHHHHhhcCccccccccchHHHHHHHHH
Q 040913 163 GQPRLDISEFERAREEWFDLLIE---GP-------IGLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWILDDIIR 232 (425)
Q Consensus 163 ~~~~~~~vGr~~~~~~l~~~L~~---~~-------~~~~vi~IvG~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~~il~ 232 (425)
.+.-.++=|.+....++.+++.. ++ ...+=|.++|++|.|||.||+.+.+ +..-.|-.+. .-+|+.
T Consensus 186 nv~f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAg--el~vPf~~is--ApeivS 261 (802)
T KOG0733|consen 186 NVSFSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAG--ELGVPFLSIS--APEIVS 261 (802)
T ss_pred CcchhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhh--hcCCceEeec--chhhhc
Confidence 33445667889888888777653 21 2355577999999999999999999 4444441100 011111
Q ss_pred HhCCCCCCCccCCCCHHHHHHHHHHHhcCCeEEEEecccC
Q 040913 233 SLMPPSRVTVIIGEDYKLKKSILRDFLTNKKYFIALDDVC 272 (425)
Q Consensus 233 ~l~~~~~~~~~~~~~~~~l~~~l~~~l~~kr~LlVLDdvw 272 (425)
+....+++.+.+-+.+.-..-.+++++|++.
T Consensus 262 ---------GvSGESEkkiRelF~~A~~~aPcivFiDeID 292 (802)
T KOG0733|consen 262 ---------GVSGESEKKIRELFDQAKSNAPCIVFIDEID 292 (802)
T ss_pred ---------ccCcccHHHHHHHHHHHhccCCeEEEeeccc
Confidence 2233455555555555666789999999995
No 193
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=95.73 E-value=0.011 Score=53.56 Aligned_cols=25 Identities=16% Similarity=0.027 Sum_probs=21.8
Q ss_pred CCcEEEEEEecCCCchHHHHHHhhc
Q 040913 188 IGLSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 188 ~~~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
+.-.++-|+|++|+|||+|+.++..
T Consensus 10 ~~g~i~~i~G~~GsGKT~l~~~~~~ 34 (209)
T TIGR02237 10 ERGTITQIYGPPGSGKTNICMILAV 34 (209)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4568999999999999999988764
No 194
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=95.73 E-value=0.05 Score=51.79 Aligned_cols=102 Identities=14% Similarity=0.107 Sum_probs=65.0
Q ss_pred CCCcccchh---hHHHHHHHHhcCC-CCcEEEEEEecCCCchHHHHHHhhcCcccc-----ccccchHHH----------
Q 040913 166 RLDISEFER---AREEWFDLLIEGP-IGLSVVAILDSSGFDKTAFAADTYNNNHVK-----FYFDCLAWI---------- 226 (425)
Q Consensus 166 ~~~~vGr~~---~~~~l~~~L~~~~-~~~~vi~IvG~gGvGKTtLa~~v~~~~~~~-----~~F~~~~wv---------- 226 (425)
.+..+|... ..+++.++|..+. ...+-+.|||.+|.|||++++......-.. ..+ .++.|
T Consensus 33 ~~rWIgY~~A~~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~-PVv~vq~P~~p~~~~ 111 (302)
T PF05621_consen 33 ADRWIGYPRAKEALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERI-PVVYVQMPPEPDERR 111 (302)
T ss_pred cCCeecCHHHHHHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccc-cEEEEecCCCCChHH
Confidence 344666443 3455555565553 346778999999999999999988632111 111 11122
Q ss_pred -HHHHHHHhCCCCCCCccCCCCHHHHHHHHHHHhcC-CeEEEEecccC
Q 040913 227 -LDDIIRSLMPPSRVTVIIGEDYKLKKSILRDFLTN-KKYFIALDDVC 272 (425)
Q Consensus 227 -~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~-kr~LlVLDdvw 272 (425)
...|+.+++.+... ..+...+...+...++. +--+||+|.+-
T Consensus 112 ~Y~~IL~~lgaP~~~----~~~~~~~~~~~~~llr~~~vrmLIIDE~H 155 (302)
T PF05621_consen 112 FYSAILEALGAPYRP----RDRVAKLEQQVLRLLRRLGVRMLIIDEFH 155 (302)
T ss_pred HHHHHHHHhCcccCC----CCCHHHHHHHHHHHHHHcCCcEEEeechH
Confidence 78999999988652 23445555566566654 55689999996
No 195
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=95.73 E-value=0.0072 Score=44.50 Aligned_cols=21 Identities=29% Similarity=0.370 Sum_probs=19.1
Q ss_pred EEEEEecCCCchHHHHHHhhc
Q 040913 192 VVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 192 vi~IvG~gGvGKTtLa~~v~~ 212 (425)
+|.|.|..|+||||+++.+.+
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~ 21 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAE 21 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999998887
No 196
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=95.69 E-value=0.094 Score=51.29 Aligned_cols=128 Identities=9% Similarity=0.019 Sum_probs=69.5
Q ss_pred Cccc-chhhHHHHHHHHhcCCCCcEEEEEEecCCCchHHHHHHhhcCccccccc------cchHHHHHHHHHHhCCCCCC
Q 040913 168 DISE-FERAREEWFDLLIEGPIGLSVVAILDSSGFDKTAFAADTYNNNHVKFYF------DCLAWILDDIIRSLMPPSRV 240 (425)
Q Consensus 168 ~~vG-r~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLa~~v~~~~~~~~~F------~~~~wv~~~il~~l~~~~~~ 240 (425)
.++| -+...+.+.+.+..+. -.+..-++|+.|+||||+|..+.+.--..... .|... +.+......
T Consensus 6 ~i~~~q~~~~~~L~~~~~~~~-l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c------~~~~~~~hp 78 (329)
T PRK08058 6 QLTALQPVVVKMLQNSIAKNR-LSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNC------KRIDSGNHP 78 (329)
T ss_pred HHHhhHHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHH------HHHhcCCCC
Confidence 3556 5666777777776543 45667899999999999998775421111000 01110 011000000
Q ss_pred C------ccCCCCHHHHHHHHHHH----hcCCeEEEEecccCC-ChhhHHHHHhhCCCCCCCcEEEEecCChh
Q 040913 241 T------VIIGEDYKLKKSILRDF----LTNKKYFIALDDVCH-NIEIWDDLEEVLPDNQNGSRVLITVINPS 302 (425)
Q Consensus 241 ~------~~~~~~~~~l~~~l~~~----l~~kr~LlVLDdvw~-~~~~~~~l~~~l~~~~~gskIivTTR~~~ 302 (425)
. +......+++.+.+... ..+.+-++|+|++.. +.+.-+.+...+..-..++.+|++|.+..
T Consensus 79 D~~~i~~~~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~~ 151 (329)
T PRK08058 79 DVHLVAPDGQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKH 151 (329)
T ss_pred CEEEeccccccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCChH
Confidence 0 00112334443333221 235566799999853 44567778778776666777777776533
No 197
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=95.67 E-value=0.03 Score=60.46 Aligned_cols=48 Identities=21% Similarity=0.003 Sum_probs=38.3
Q ss_pred CCCcccchhhHHHHHHHHhcCCCCcEEEEEEecCCCchHHHHHHhhcC
Q 040913 166 RLDISEFERAREEWFDLLIEGPIGLSVVAILDSSGFDKTAFAADTYNN 213 (425)
Q Consensus 166 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLa~~v~~~ 213 (425)
...++|....+..+.+.+..-.....-|-|.|..|+|||++|+.+++.
T Consensus 375 ~~~liG~S~~~~~~~~~~~~~a~~~~pVLI~GE~GTGK~~lA~~ih~~ 422 (686)
T PRK15429 375 FGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNL 422 (686)
T ss_pred ccceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHh
Confidence 346999999999988777643333446789999999999999999874
No 198
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=95.67 E-value=0.042 Score=53.02 Aligned_cols=24 Identities=17% Similarity=0.112 Sum_probs=21.2
Q ss_pred cEEEEEEecCCCchHHHHHHhhcC
Q 040913 190 LSVVAILDSSGFDKTAFAADTYNN 213 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~~ 213 (425)
-.+++|+|+.|.|||||.+.+...
T Consensus 28 Gei~~l~G~NGaGKTTLl~~l~Gl 51 (301)
T TIGR03522 28 GRIVGFLGPNGAGKSTTMKIITGY 51 (301)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999998753
No 199
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=95.65 E-value=0.043 Score=48.12 Aligned_cols=21 Identities=29% Similarity=0.284 Sum_probs=18.5
Q ss_pred EEEEEecCCCchHHHHHHhhc
Q 040913 192 VVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 192 vi~IvG~gGvGKTtLa~~v~~ 212 (425)
++.++|++|+||||++..+..
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~ 22 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLAL 22 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 678999999999999887765
No 200
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=95.65 E-value=0.045 Score=50.66 Aligned_cols=23 Identities=26% Similarity=0.239 Sum_probs=20.6
Q ss_pred cEEEEEEecCCCchHHHHHHhhc
Q 040913 190 LSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
-.+++|+|..|+|||||++.+..
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~G 50 (237)
T cd03252 28 GEVVGIVGRSGSGKSTLTKLIQR 50 (237)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 45899999999999999998875
No 201
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=95.64 E-value=0.092 Score=51.26 Aligned_cols=108 Identities=13% Similarity=0.067 Sum_probs=58.3
Q ss_pred CCCcEEEEEEecCCCchHHHHHHhhcCcccc------ccccchHHHHHHHHHHhCCCCCCC-----c----cCCCCHHHH
Q 040913 187 PIGLSVVAILDSSGFDKTAFAADTYNNNHVK------FYFDCLAWILDDIIRSLMPPSRVT-----V----IIGEDYKLK 251 (425)
Q Consensus 187 ~~~~~vi~IvG~gGvGKTtLa~~v~~~~~~~------~~F~~~~wv~~~il~~l~~~~~~~-----~----~~~~~~~~l 251 (425)
..-...+.+.|+.|+||||+|..+.+.--.. .+=.|.... .+... ..+ . ......+++
T Consensus 19 ~r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~------~~~~g-~HPD~~~i~~~~~~~~i~id~i 91 (328)
T PRK05707 19 GRHPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQ------LLRAG-SHPDNFVLEPEEADKTIKVDQV 91 (328)
T ss_pred CCcceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHH------HHhcC-CCCCEEEEeccCCCCCCCHHHH
Confidence 3346678899999999999998765521111 111111110 00000 000 0 011234444
Q ss_pred HHHHHHHh-----cCCeEEEEecccCC-ChhhHHHHHhhCCCCCCCcEEEEecCChh
Q 040913 252 KSILRDFL-----TNKKYFIALDDVCH-NIEIWDDLEEVLPDNQNGSRVLITVINPS 302 (425)
Q Consensus 252 ~~~l~~~l-----~~kr~LlVLDdvw~-~~~~~~~l~~~l~~~~~gskIivTTR~~~ 302 (425)
.+ +.+.+ .+++-++|+|++.. +.+..+.+...+-.-..++.+|+||.+.+
T Consensus 92 R~-l~~~~~~~~~~~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~ 147 (328)
T PRK05707 92 RE-LVSFVVQTAQLGGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPS 147 (328)
T ss_pred HH-HHHHHhhccccCCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChh
Confidence 43 22322 24555667899964 55777777777766555777777777654
No 202
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=95.64 E-value=0.033 Score=57.85 Aligned_cols=48 Identities=15% Similarity=-0.008 Sum_probs=40.2
Q ss_pred CCCcccchhhHHHHHHHHhcCCCCcEEEEEEecCCCchHHHHHHhhcC
Q 040913 166 RLDISEFERAREEWFDLLIEGPIGLSVVAILDSSGFDKTAFAADTYNN 213 (425)
Q Consensus 166 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLa~~v~~~ 213 (425)
...++|....+.++.+.+..-.....-|.|.|..|+|||++|+.+++.
T Consensus 186 ~~~iig~s~~~~~~~~~i~~~a~~~~pVlI~Ge~GtGK~~~A~~ih~~ 233 (509)
T PRK05022 186 EGEMIGQSPAMQQLKKEIEVVAASDLNVLILGETGVGKELVARAIHAA 233 (509)
T ss_pred CCceeecCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHh
Confidence 456999999999998888765444556789999999999999999874
No 203
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.64 E-value=0.027 Score=52.53 Aligned_cols=117 Identities=11% Similarity=0.104 Sum_probs=67.0
Q ss_pred cEEEEEEecCCCchHHHHHHhhcCccccc---cccchHH----H------HHHHHHHhCCCCCCC---ccCCCCHHHHHH
Q 040913 190 LSVVAILDSSGFDKTAFAADTYNNNHVKF---YFDCLAW----I------LDDIIRSLMPPSRVT---VIIGEDYKLKKS 253 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~~~~~~~---~F~~~~w----v------~~~il~~l~~~~~~~---~~~~~~~~~l~~ 253 (425)
-.++++||..|.|||||++.+..=.+-.. .|+..-. . ..+++..++.....- ....+..+.-.-
T Consensus 39 ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQRi 118 (268)
T COG4608 39 GETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQRQRI 118 (268)
T ss_pred CCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhhhhH
Confidence 56899999999999999999987332111 2443211 1 556666666332211 112222233334
Q ss_pred HHHHHhcCCeEEEEecccCC--ChhhHHHHHhhCCC--CCCCcEEEEecCChhHHHH
Q 040913 254 ILRDFLTNKKYFIALDDVCH--NIEIWDDLEEVLPD--NQNGSRVLITVINPSLLTS 306 (425)
Q Consensus 254 ~l~~~l~~kr~LlVLDdvw~--~~~~~~~l~~~l~~--~~~gskIivTTR~~~va~~ 306 (425)
.+...|.-+.-|||.|..-+ +...-.++...+.+ ...|-..+..|.+-.|+..
T Consensus 119 ~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~ 175 (268)
T COG4608 119 GIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRY 175 (268)
T ss_pred HHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhh
Confidence 57777888999999998752 11112233333321 2236667777777777653
No 204
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=95.63 E-value=0.01 Score=52.99 Aligned_cols=111 Identities=14% Similarity=0.071 Sum_probs=55.9
Q ss_pred EEEEEecCCCchHHHHHHhhcCccccccccchHHH-------HHHHHHHhCCCCCCCccCCCCHHHHHHHHHHHhcC--C
Q 040913 192 VVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWI-------LDDIIRSLMPPSRVTVIIGEDYKLKKSILRDFLTN--K 262 (425)
Q Consensus 192 vi~IvG~gGvGKTtLa~~v~~~~~~~~~F~~~~wv-------~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~--k 262 (425)
++.|.|..|.||||+.+.+.-..- -.+-.+.++. ...++..+...... .....+...-...+...+.. +
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~~~~-la~~G~~v~a~~~~~~~~d~il~~~~~~d~~-~~~~s~fs~~~~~l~~~l~~~~~ 78 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGLIVI-MAQIGSFVPAESAELPVFDRIFTRIGASDSL-AQGLSTFMVEMKETANILKNATE 78 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHHHHH-HHHhCCCeeehheEecccceEEEEeCCCCch-hccccHHHHHHHHHHHHHHhCCC
Confidence 467999999999999998873211 1111111111 22333222222111 11111222223345555554 8
Q ss_pred eEEEEecccCC--Chhh----HHHHHhhCCCCCCCcEEEEecCChhHHH
Q 040913 263 KYFIALDDVCH--NIEI----WDDLEEVLPDNQNGSRVLITVINPSLLT 305 (425)
Q Consensus 263 r~LlVLDdvw~--~~~~----~~~l~~~l~~~~~gskIivTTR~~~va~ 305 (425)
+-|+++|..-. +... ...+...+.. ..++.+|++|.+.++..
T Consensus 79 ~~llllDEp~~g~d~~~~~~~~~~~l~~l~~-~~~~~iii~TH~~~l~~ 126 (185)
T smart00534 79 NSLVLLDELGRGTSTYDGVAIAAAVLEYLLE-KIGALTLFATHYHELTK 126 (185)
T ss_pred CeEEEEecCCCCCCHHHHHHHHHHHHHHHHh-cCCCeEEEEecHHHHHH
Confidence 89999999852 1111 1122222222 23678999998877654
No 205
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.60 E-value=0.041 Score=48.28 Aligned_cols=24 Identities=25% Similarity=0.141 Sum_probs=21.5
Q ss_pred cEEEEEEecCCCchHHHHHHhhcC
Q 040913 190 LSVVAILDSSGFDKTAFAADTYNN 213 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~~ 213 (425)
-.+++|+|..|.|||||.+.+..-
T Consensus 28 G~~~~l~G~nGsGKstLl~~i~G~ 51 (171)
T cd03228 28 GEKVAIVGPSGSGKSTLLKLLLRL 51 (171)
T ss_pred CCEEEEECCCCCCHHHHHHHHHcC
Confidence 468999999999999999999874
No 206
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=95.58 E-value=0.028 Score=56.08 Aligned_cols=105 Identities=11% Similarity=0.043 Sum_probs=68.7
Q ss_pred CCCCCcccchhhHHHHHHHHhcC--CCCcEEEEEEecCCCchHHHHHHhhcCccccccccchHHH-----------HHHH
Q 040913 164 QPRLDISEFERAREEWFDLLIEG--PIGLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWI-----------LDDI 230 (425)
Q Consensus 164 ~~~~~~vGr~~~~~~l~~~L~~~--~~~~~vi~IvG~gGvGKTtLa~~v~~~~~~~~~F~~~~wv-----------~~~i 230 (425)
..+..++||+.+++.+.+++... ....+.+-|.|.+|.|||.+...++.+..-...=.+++++ +..|
T Consensus 147 ~~p~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~kI 226 (529)
T KOG2227|consen 147 APPGTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFKKI 226 (529)
T ss_pred CCCCCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHHHH
Confidence 34567899999999999998765 3356778889999999999999998853211110111222 5555
Q ss_pred HHHhCCCCCCCccCCCCHHHHHHHHHHHhcCC--eEEEEecccC
Q 040913 231 IRSLMPPSRVTVIIGEDYKLKKSILRDFLTNK--KYFIALDDVC 272 (425)
Q Consensus 231 l~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~k--r~LlVLDdvw 272 (425)
...+...... .....+.+..+.....+. -+|+|||...
T Consensus 227 ~~~~~q~~~s----~~~~~~~~~~~~~h~~q~k~~~llVlDEmD 266 (529)
T KOG2227|consen 227 FSSLLQDLVS----PGTGMQHLEKFEKHTKQSKFMLLLVLDEMD 266 (529)
T ss_pred HHHHHHHhcC----CchhHHHHHHHHHHHhcccceEEEEechhh
Confidence 5555222221 112256667777776653 5899999886
No 207
>PRK03839 putative kinase; Provisional
Probab=95.58 E-value=0.0088 Score=52.96 Aligned_cols=22 Identities=23% Similarity=0.326 Sum_probs=19.9
Q ss_pred EEEEEecCCCchHHHHHHhhcC
Q 040913 192 VVAILDSSGFDKTAFAADTYNN 213 (425)
Q Consensus 192 vi~IvG~gGvGKTtLa~~v~~~ 213 (425)
.|.|.|++|+||||+++.+.+.
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~ 23 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEK 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999883
No 208
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=95.58 E-value=0.025 Score=48.95 Aligned_cols=111 Identities=13% Similarity=0.125 Sum_probs=58.3
Q ss_pred EEEEEEecCCCchHHHHHHhhc-----Ccccc-ccccchHHH--HHHHHHHhCCCCCC-----C-ccCCCCH-------H
Q 040913 191 SVVAILDSSGFDKTAFAADTYN-----NNHVK-FYFDCLAWI--LDDIIRSLMPPSRV-----T-VIIGEDY-------K 249 (425)
Q Consensus 191 ~vi~IvG~gGvGKTtLa~~v~~-----~~~~~-~~F~~~~wv--~~~il~~l~~~~~~-----~-~~~~~~~-------~ 249 (425)
+.|-|++..|.||||+|-...- ..++. -.|-..-|- -..++..+.. ... . .....+. .
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~ra~~~g~~v~~vQFlKg~~~~gE~~~l~~l~~-v~~~~~g~~~~~~~~~~~~~~~~a~ 81 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALRALGHGYRVGVVQFLKGGWKYGELKALERLPN-IEIHRMGRGFFWTTENDEEDIAAAA 81 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEEeCCCCccCHHHHHHhCCC-cEEEECCCCCccCCCChHHHHHHHH
Confidence 4678888899999999865432 11111 012111122 3334444420 000 0 0000111 1
Q ss_pred HHHHHHHHHhcCC-eEEEEecccCC----ChhhHHHHHhhCCCCCCCcEEEEecCChh
Q 040913 250 LKKSILRDFLTNK-KYFIALDDVCH----NIEIWDDLEEVLPDNQNGSRVLITVINPS 302 (425)
Q Consensus 250 ~l~~~l~~~l~~k-r~LlVLDdvw~----~~~~~~~l~~~l~~~~~gskIivTTR~~~ 302 (425)
...+..++.+... -=|||||++-. ..-..+.+...+.....+.-||+|.|+..
T Consensus 82 ~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p 139 (159)
T cd00561 82 EGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAP 139 (159)
T ss_pred HHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCC
Confidence 1233344444444 44999999851 12355667777766666788999999954
No 209
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=95.57 E-value=0.029 Score=49.34 Aligned_cols=24 Identities=25% Similarity=0.200 Sum_probs=21.3
Q ss_pred cEEEEEEecCCCchHHHHHHhhcC
Q 040913 190 LSVVAILDSSGFDKTAFAADTYNN 213 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~~ 213 (425)
-.+++|+|..|.|||||.+.+..-
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~ 51 (173)
T cd03246 28 GESLAIIGPSGSGKSTLARLILGL 51 (173)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhc
Confidence 458999999999999999999863
No 210
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.57 E-value=0.018 Score=54.72 Aligned_cols=77 Identities=10% Similarity=0.141 Sum_probs=49.4
Q ss_pred cEEEEEEecCCCchHHHHHHhhcCcccc--ccccchHHH---HHHHHHHhCCCCCCCccCCCCHHHHHHHHHHHhcCCeE
Q 040913 190 LSVVAILDSSGFDKTAFAADTYNNNHVK--FYFDCLAWI---LDDIIRSLMPPSRVTVIIGEDYKLKKSILRDFLTNKKY 264 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~~~~~~--~~F~~~~wv---~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~kr~ 264 (425)
-++|.++|++|.|||+|.+.+++.-.++ +.+....-+ -.++..+.+...+ .-...+-++|.+.++++..
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinshsLFSKWFsESg------KlV~kmF~kI~ELv~d~~~ 250 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSHSLFSKWFSESG------KLVAKMFQKIQELVEDRGN 250 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehhHHHHHHHhhhh------hHHHHHHHHHHHHHhCCCc
Confidence 5889999999999999999999864333 223222211 3344444433332 3456677788888877554
Q ss_pred --EEEecccC
Q 040913 265 --FIALDDVC 272 (425)
Q Consensus 265 --LlVLDdvw 272 (425)
++.+|.|.
T Consensus 251 lVfvLIDEVE 260 (423)
T KOG0744|consen 251 LVFVLIDEVE 260 (423)
T ss_pred EEEEEeHHHH
Confidence 55678885
No 211
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=95.57 E-value=0.01 Score=53.38 Aligned_cols=23 Identities=26% Similarity=0.328 Sum_probs=18.6
Q ss_pred cEEEEEEecCCCchHHHHHHhhc
Q 040913 190 LSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
++||.+||+.|+||||.+-++..
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa 23 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAA 23 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHH
Confidence 47999999999999996655443
No 212
>PRK14527 adenylate kinase; Provisional
Probab=95.56 E-value=0.078 Score=47.41 Aligned_cols=24 Identities=25% Similarity=0.165 Sum_probs=21.5
Q ss_pred CcEEEEEEecCCCchHHHHHHhhc
Q 040913 189 GLSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 189 ~~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
...+|.|+|++|+||||+|+.+.+
T Consensus 5 ~~~~i~i~G~pGsGKsT~a~~La~ 28 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQAERLAQ 28 (191)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 357899999999999999999876
No 213
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=95.56 E-value=0.01 Score=52.71 Aligned_cols=24 Identities=13% Similarity=0.173 Sum_probs=21.6
Q ss_pred CcEEEEEEecCCCchHHHHHHhhc
Q 040913 189 GLSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 189 ~~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
..++|.|+|++|+||||+++.+..
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~ 25 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVE 25 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 367899999999999999999875
No 214
>PRK04296 thymidine kinase; Provisional
Probab=95.55 E-value=0.012 Score=52.74 Aligned_cols=107 Identities=13% Similarity=0.039 Sum_probs=55.4
Q ss_pred EEEEEEecCCCchHHHHHHhhcCcccc--------ccccchHHHHHHHHHHhCCCCCCCccCCCCHHHHHHHHHHHhcCC
Q 040913 191 SVVAILDSSGFDKTAFAADTYNNNHVK--------FYFDCLAWILDDIIRSLMPPSRVTVIIGEDYKLKKSILRDFLTNK 262 (425)
Q Consensus 191 ~vi~IvG~gGvGKTtLa~~v~~~~~~~--------~~F~~~~wv~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~k 262 (425)
.++.|.|..|.||||++.......... ..|+.+.- ...+...++.... ........++...+.+ ..++
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~~~d~~~~-~~~i~~~lg~~~~--~~~~~~~~~~~~~~~~-~~~~ 78 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKPAIDDRYG-EGKVVSRIGLSRE--AIPVSSDTDIFELIEE-EGEK 78 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEecccccccc-CCcEecCCCCccc--ceEeCChHHHHHHHHh-hCCC
Confidence 467789999999999987766522111 11111100 1223333321111 1111234555555555 3334
Q ss_pred eEEEEecccCC-ChhhHHHHHhhCCCCCCCcEEEEecCChhH
Q 040913 263 KYFIALDDVCH-NIEIWDDLEEVLPDNQNGSRVLITVINPSL 303 (425)
Q Consensus 263 r~LlVLDdvw~-~~~~~~~l~~~l~~~~~gskIivTTR~~~v 303 (425)
.-+||+|.+.. +.+....+...+ ...|..||+|.++.+.
T Consensus 79 ~dvviIDEaq~l~~~~v~~l~~~l--~~~g~~vi~tgl~~~~ 118 (190)
T PRK04296 79 IDCVLIDEAQFLDKEQVVQLAEVL--DDLGIPVICYGLDTDF 118 (190)
T ss_pred CCEEEEEccccCCHHHHHHHHHHH--HHcCCeEEEEecCccc
Confidence 55899999863 233233333332 2447889999998553
No 215
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=95.55 E-value=0.017 Score=53.18 Aligned_cols=32 Identities=22% Similarity=0.150 Sum_probs=24.5
Q ss_pred HHHhcCCCCcEEEEEEecCCCchHHHHHHhhc
Q 040913 181 DLLIEGPIGLSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 181 ~~L~~~~~~~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
+.|..+=..-.++.|+|.+|+|||+||.++..
T Consensus 14 ~~l~GGi~~g~i~~i~G~~GsGKT~l~~~la~ 45 (225)
T PRK09361 14 ELLGGGFERGTITQIYGPPGSGKTNICLQLAV 45 (225)
T ss_pred HHhcCCCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 33333334568999999999999999988775
No 216
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=95.54 E-value=0.07 Score=45.40 Aligned_cols=103 Identities=13% Similarity=0.108 Sum_probs=54.9
Q ss_pred cEEEEEEecCCCchHHHHHHhhcCccccccccchHHHHHHHHHHhCCCCCCCccCCCCHHHHHHHHHHHhcCCeEEEEec
Q 040913 190 LSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWILDDIIRSLMPPSRVTVIIGEDYKLKKSILRDFLTNKKYFIALD 269 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~kr~LlVLD 269 (425)
-.+++|+|..|.|||||++.+..-.... ...+++-.. ..+.. -..-+..+...-.+...+..+.-++++|
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~~~~---~G~i~~~~~--~~i~~-----~~~lS~G~~~rv~laral~~~p~illlD 95 (144)
T cd03221 26 GDRIGLVGRNGAGKSTLLKLIAGELEPD---EGIVTWGST--VKIGY-----FEQLSGGEKMRLALAKLLLENPNLLLLD 95 (144)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCCCCCC---ceEEEECCe--EEEEE-----EccCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 4688999999999999999998743211 111111000 00000 0001122333344566666677789999
Q ss_pred ccCC--ChhhHHHHHhhCCCCCCCcEEEEecCChhHH
Q 040913 270 DVCH--NIEIWDDLEEVLPDNQNGSRVLITVINPSLL 304 (425)
Q Consensus 270 dvw~--~~~~~~~l~~~l~~~~~gskIivTTR~~~va 304 (425)
+.-. +......+...+... +..||++|.+...+
T Consensus 96 EP~~~LD~~~~~~l~~~l~~~--~~til~~th~~~~~ 130 (144)
T cd03221 96 EPTNHLDLESIEALEEALKEY--PGTVILVSHDRYFL 130 (144)
T ss_pred CCccCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHH
Confidence 8752 233444444444322 24677787775544
No 217
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=95.54 E-value=0.0078 Score=54.18 Aligned_cols=21 Identities=29% Similarity=0.433 Sum_probs=19.4
Q ss_pred EEEEEecCCCchHHHHHHhhc
Q 040913 192 VVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 192 vi~IvG~gGvGKTtLa~~v~~ 212 (425)
+|+|.|.+|+|||||++.+..
T Consensus 1 iigi~G~~GsGKSTl~~~l~~ 21 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIE 21 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999876
No 218
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.50 E-value=0.028 Score=48.94 Aligned_cols=106 Identities=14% Similarity=0.031 Sum_probs=56.0
Q ss_pred cEEEEEEecCCCchHHHHHHhhcCccccccccchHHH---------HHHHHH-HhCCCCCCCccCCCCHHHHHHHHHHHh
Q 040913 190 LSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWI---------LDDIIR-SLMPPSRVTVIIGEDYKLKKSILRDFL 259 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~~~~~~~~F~~~~wv---------~~~il~-~l~~~~~~~~~~~~~~~~l~~~l~~~l 259 (425)
-.+++|+|..|.|||||.+.+..-... ....+++ ..+..+ .++. -..-+.-+...-.+...+
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~i~G~~~~---~~G~v~~~g~~~~~~~~~~~~~~~i~~-----~~qLS~G~~qrl~laral 97 (163)
T cd03216 26 GEVHALLGENGAGKSTLMKILSGLYKP---DSGEILVDGKEVSFASPRDARRAGIAM-----VYQLSVGERQMVEIARAL 97 (163)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCC---CCeEEEECCEECCcCCHHHHHhcCeEE-----EEecCHHHHHHHHHHHHH
Confidence 458999999999999999999863211 1111111 000000 0000 000112223334455556
Q ss_pred cCCeEEEEecccCC--ChhhHHHHHhhCCC-CCCCcEEEEecCChhH
Q 040913 260 TNKKYFIALDDVCH--NIEIWDDLEEVLPD-NQNGSRVLITVINPSL 303 (425)
Q Consensus 260 ~~kr~LlVLDdvw~--~~~~~~~l~~~l~~-~~~gskIivTTR~~~v 303 (425)
-.+.-+++||+.-. +......+...+.. ...|..||++|.+...
T Consensus 98 ~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~ 144 (163)
T cd03216 98 ARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDE 144 (163)
T ss_pred hcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence 66778899999752 22333344444432 1236678888887653
No 219
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=95.49 E-value=0.066 Score=48.97 Aligned_cols=23 Identities=17% Similarity=0.267 Sum_probs=20.6
Q ss_pred cEEEEEEecCCCchHHHHHHhhc
Q 040913 190 LSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
-.+++|+|..|.|||||.+.+..
T Consensus 30 Ge~~~i~G~nGsGKSTLl~~l~G 52 (221)
T cd03244 30 GEKVGIVGRTGSGKSSLLLALFR 52 (221)
T ss_pred CCEEEEECCCCCCHHHHHHHHHc
Confidence 46899999999999999999875
No 220
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=95.47 E-value=0.064 Score=47.50 Aligned_cols=22 Identities=23% Similarity=0.321 Sum_probs=19.8
Q ss_pred EEEEEecCCCchHHHHHHhhcC
Q 040913 192 VVAILDSSGFDKTAFAADTYNN 213 (425)
Q Consensus 192 vi~IvG~gGvGKTtLa~~v~~~ 213 (425)
.|.|.|.+|+||||+|+.+.+.
T Consensus 2 riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3679999999999999999884
No 221
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=95.42 E-value=0.029 Score=54.38 Aligned_cols=83 Identities=13% Similarity=0.060 Sum_probs=45.4
Q ss_pred CCcEEEEEEecCCCchHHHHHHhhcCccccccccchHHH------HHHHHHHhCCCCCCC-ccCCCCHHHHHHHHHHHhc
Q 040913 188 IGLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWI------LDDIIRSLMPPSRVT-VIIGEDYKLKKSILRDFLT 260 (425)
Q Consensus 188 ~~~~vi~IvG~gGvGKTtLa~~v~~~~~~~~~F~~~~wv------~~~il~~l~~~~~~~-~~~~~~~~~l~~~l~~~l~ 260 (425)
+.-+++-|.|++|+||||||.++.-. ....-...+|+ -...+.+++.....- -....+.++....+...++
T Consensus 53 p~G~iteI~Gp~GsGKTtLal~~~~~--~~~~g~~~vyId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~i~~~li~ 130 (325)
T cd00983 53 PKGRIIEIYGPESSGKTTLALHAIAE--AQKLGGTVAFIDAEHALDPVYAKKLGVDLDNLLISQPDTGEQALEIADSLVR 130 (325)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCCEEEECccccHHHHHHHHcCCCHHHheecCCCCHHHHHHHHHHHHh
Confidence 45678889999999999999887642 11111122233 111222222211100 1112345666666666554
Q ss_pred C-CeEEEEecccC
Q 040913 261 N-KKYFIALDDVC 272 (425)
Q Consensus 261 ~-kr~LlVLDdvw 272 (425)
. .--+||+|-|-
T Consensus 131 s~~~~lIVIDSva 143 (325)
T cd00983 131 SGAVDLIVVDSVA 143 (325)
T ss_pred ccCCCEEEEcchH
Confidence 3 56699999974
No 222
>PRK04040 adenylate kinase; Provisional
Probab=95.41 E-value=0.012 Score=52.53 Aligned_cols=23 Identities=22% Similarity=0.361 Sum_probs=21.0
Q ss_pred cEEEEEEecCCCchHHHHHHhhc
Q 040913 190 LSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
..+|.|+|++|+||||+++.+.+
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~ 24 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALE 24 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHH
Confidence 46899999999999999999877
No 223
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=95.41 E-value=0.074 Score=49.26 Aligned_cols=24 Identities=25% Similarity=0.173 Sum_probs=21.4
Q ss_pred cEEEEEEecCCCchHHHHHHhhcC
Q 040913 190 LSVVAILDSSGFDKTAFAADTYNN 213 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~~ 213 (425)
-.+++|+|..|.|||||++.+..-
T Consensus 29 Ge~~~l~G~nGsGKSTLl~~i~G~ 52 (238)
T cd03249 29 GKTVALVGSSGCGKSTVVSLLERF 52 (238)
T ss_pred CCEEEEEeCCCCCHHHHHHHHhcc
Confidence 468999999999999999998753
No 224
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=95.41 E-value=0.023 Score=55.91 Aligned_cols=109 Identities=13% Similarity=0.058 Sum_probs=63.4
Q ss_pred cEEEEEEecCCCchHHHHHHhhcCccccccccchHHH---HHHHHHHhCCC-CCCCccCCCCHHHHHHHHHHHhcCCeEE
Q 040913 190 LSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWI---LDDIIRSLMPP-SRVTVIIGEDYKLKKSILRDFLTNKKYF 265 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~~~~~~~~F~~~~wv---~~~il~~l~~~-~~~~~~~~~~~~~l~~~l~~~l~~kr~L 265 (425)
...|.|.|+.|+||||+...+.+ .+..+...+++. ..++...-... ....+. ..+.......++..|+...=.
T Consensus 122 ~g~ili~G~tGSGKTT~l~al~~--~i~~~~~~~i~tiEdp~E~~~~~~~~~i~q~ev-g~~~~~~~~~l~~~lr~~pd~ 198 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTTLASMID--YINKNAAGHIITIEDPIEYVHRNKRSLINQREV-GLDTLSFANALRAALREDPDV 198 (343)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH--hhCcCCCCEEEEEcCChhhhccCccceEEcccc-CCCCcCHHHHHHHhhccCCCE
Confidence 47899999999999999998776 333333333333 00111000000 000000 112234566677888888889
Q ss_pred EEecccCCChhhHHHHHhhCCCCCCCcEEEEecCChhHHH
Q 040913 266 IALDDVCHNIEIWDDLEEVLPDNQNGSRVLITVINPSLLT 305 (425)
Q Consensus 266 lVLDdvw~~~~~~~~l~~~l~~~~~gskIivTTR~~~va~ 305 (425)
|++|.+. +.+.+...... ...|..|+.|+...++..
T Consensus 199 i~vgEir-d~~~~~~~l~a---a~tGh~v~~T~Ha~~~~~ 234 (343)
T TIGR01420 199 ILIGEMR-DLETVELALTA---AETGHLVFGTLHTNSAAQ 234 (343)
T ss_pred EEEeCCC-CHHHHHHHHHH---HHcCCcEEEEEcCCCHHH
Confidence 9999998 77766553332 233666777777766654
No 225
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=95.41 E-value=0.076 Score=48.05 Aligned_cols=23 Identities=13% Similarity=0.268 Sum_probs=20.7
Q ss_pred cEEEEEEecCCCchHHHHHHhhc
Q 040913 190 LSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
-.+++|+|..|.|||||.+.+..
T Consensus 34 G~~~~i~G~nGsGKSTLl~~l~G 56 (207)
T cd03369 34 GEKIGIVGRTGAGKSTLILALFR 56 (207)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 46899999999999999999875
No 226
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=95.40 E-value=0.0088 Score=54.93 Aligned_cols=21 Identities=19% Similarity=0.164 Sum_probs=19.2
Q ss_pred EEEEEecCCCchHHHHHHhhc
Q 040913 192 VVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 192 vi~IvG~gGvGKTtLa~~v~~ 212 (425)
+|+|.|.+|+||||||+.+.+
T Consensus 1 IigI~G~sGSGKTTla~~L~~ 21 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQA 21 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHH
Confidence 589999999999999998876
No 227
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=95.40 E-value=0.057 Score=50.06 Aligned_cols=94 Identities=14% Similarity=0.080 Sum_probs=56.6
Q ss_pred CCCCcccchhhHHHHHHHHhcC----C-------CCcEEEEEEecCCCchHHHHHHhhcCccccccccchHHHHHHHHHH
Q 040913 165 PRLDISEFERAREEWFDLLIEG----P-------IGLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWILDDIIRS 233 (425)
Q Consensus 165 ~~~~~vGr~~~~~~l~~~L~~~----~-------~~~~vi~IvG~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~~il~~ 233 (425)
..+++=|-.+.+++|-+....+ + +.++=|..+|++|.|||-+|++|.| +...+|-.++=. ++...
T Consensus 175 ty~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravan--rtdacfirvigs--elvqk 250 (435)
T KOG0729|consen 175 TYSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVAN--RTDACFIRVIGS--ELVQK 250 (435)
T ss_pred ccccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhc--ccCceEEeehhH--HHHHH
Confidence 3345556777777776554322 1 3466678899999999999999999 777777433211 11111
Q ss_pred hCCCCCCCccCCCCHHHHHHHHHHHhcC-CeEEEEecccC
Q 040913 234 LMPPSRVTVIIGEDYKLKKSILRDFLTN-KKYFIALDDVC 272 (425)
Q Consensus 234 l~~~~~~~~~~~~~~~~l~~~l~~~l~~-kr~LlVLDdvw 272 (425)
.. .....+...+.+.-+. |-|+|.+|.+.
T Consensus 251 yv----------gegarmvrelf~martkkaciiffdeid 280 (435)
T KOG0729|consen 251 YV----------GEGARMVRELFEMARTKKACIIFFDEID 280 (435)
T ss_pred Hh----------hhhHHHHHHHHHHhcccceEEEEeeccc
Confidence 00 1112333444444444 66899999884
No 228
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.40 E-value=0.032 Score=53.17 Aligned_cols=23 Identities=13% Similarity=0.049 Sum_probs=20.9
Q ss_pred cEEEEEEecCCCchHHHHHHhhc
Q 040913 190 LSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
-.+++|+|..|.|||||.+.+..
T Consensus 33 Ge~~~i~G~nGsGKSTLl~~l~G 55 (279)
T PRK13650 33 GEWLSIIGHNGSGKSTTVRLIDG 55 (279)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 46899999999999999999875
No 229
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=95.39 E-value=0.016 Score=50.80 Aligned_cols=46 Identities=17% Similarity=0.046 Sum_probs=33.8
Q ss_pred cccchhhHHHHHHHHhcCCCCcEEEEEEecCCCchHHHHHHhhcCc
Q 040913 169 ISEFERAREEWFDLLIEGPIGLSVVAILDSSGFDKTAFAADTYNNN 214 (425)
Q Consensus 169 ~vGr~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLa~~v~~~~ 214 (425)
++|....+.++++.+..-.....-|-|+|..|+||+.+|+.+++.-
T Consensus 1 liG~s~~m~~~~~~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~~s 46 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAASSDLPVLITGETGTGKELLARAIHNNS 46 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTTSTS-EEEECSTTSSHHHHHHHHHHCS
T ss_pred CEeCCHHHHHHHHHHHHHhCCCCCEEEEcCCCCcHHHHHHHHHHhh
Confidence 4788888888888877643223456699999999999999999853
No 230
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=95.38 E-value=0.013 Score=52.95 Aligned_cols=22 Identities=9% Similarity=-0.010 Sum_probs=20.3
Q ss_pred EEEEEEecCCCchHHHHHHhhc
Q 040913 191 SVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 191 ~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
.++.|+|..|.|||||.+.+..
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred eEEEEECCCCCccHHHHHHHHH
Confidence 6899999999999999999884
No 231
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=95.38 E-value=0.023 Score=47.58 Aligned_cols=40 Identities=15% Similarity=0.076 Sum_probs=28.3
Q ss_pred hhHHHHHHHHhcCCCCcEEEEEEecCCCchHHHHHHhhcC
Q 040913 174 RAREEWFDLLIEGPIGLSVVAILDSSGFDKTAFAADTYNN 213 (425)
Q Consensus 174 ~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLa~~v~~~ 213 (425)
++..++.+.|...-..-.+|.+.|.-|.|||||++.+.+.
T Consensus 6 ~~t~~l~~~l~~~l~~~~~i~l~G~lGaGKTtl~~~l~~~ 45 (133)
T TIGR00150 6 KAMDKFGKAFAKPLDFGTVVLLKGDLGAGKTTLVQGLLQG 45 (133)
T ss_pred HHHHHHHHHHHHhCCCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 3444555545433223568999999999999999999874
No 232
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.38 E-value=0.025 Score=51.29 Aligned_cols=113 Identities=10% Similarity=0.029 Sum_probs=57.4
Q ss_pred cEEEEEEecCCCchHHHHHHhhcCcccc--ccccchHHH----HHHHHHHhCCCCCCCccCCCCHHHHHHHHHHHh--cC
Q 040913 190 LSVVAILDSSGFDKTAFAADTYNNNHVK--FYFDCLAWI----LDDIIRSLMPPSRVTVIIGEDYKLKKSILRDFL--TN 261 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~~~~~~--~~F~~~~wv----~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~l--~~ 261 (425)
..++.|.|+.|.||||+.+.+....-.. ..|-+.... .+.|...+....... ....+...-...+...+ ..
T Consensus 29 ~~~~~l~G~n~~GKstll~~i~~~~~la~~G~~vpa~~~~l~~~d~I~~~~~~~d~~~-~~~S~fs~e~~~~~~il~~~~ 107 (204)
T cd03282 29 SRFHIITGPNMSGKSTYLKQIALLAIMAQIGCFVPAEYATLPIFNRLLSRLSNDDSME-RNLSTFASEMSETAYILDYAD 107 (204)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHHHcCCCcchhhcCccChhheeEecCCccccc-hhhhHHHHHHHHHHHHHHhcC
Confidence 4789999999999999988876421100 112110000 444444444332110 00001111111222222 35
Q ss_pred CeEEEEecccCC--Chhh----HHHHHhhCCCCCCCcEEEEecCChhHHH
Q 040913 262 KKYFIALDDVCH--NIEI----WDDLEEVLPDNQNGSRVLITVINPSLLT 305 (425)
Q Consensus 262 kr~LlVLDdvw~--~~~~----~~~l~~~l~~~~~gskIivTTR~~~va~ 305 (425)
++-|++||..-. +..+ ...+...+. ..|+.+|++|....++.
T Consensus 108 ~~~lvllDE~~~gt~~~~~~~l~~~il~~l~--~~~~~~i~~TH~~~l~~ 155 (204)
T cd03282 108 GDSLVLIDELGRGTSSADGFAISLAILECLI--KKESTVFFATHFRDIAA 155 (204)
T ss_pred CCcEEEeccccCCCCHHHHHHHHHHHHHHHH--hcCCEEEEECChHHHHH
Confidence 678999999841 2221 112222232 23789999999988775
No 233
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.37 E-value=0.072 Score=49.25 Aligned_cols=24 Identities=25% Similarity=0.192 Sum_probs=21.2
Q ss_pred cEEEEEEecCCCchHHHHHHhhcC
Q 040913 190 LSVVAILDSSGFDKTAFAADTYNN 213 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~~ 213 (425)
-.+++|+|..|+|||||.+.+..-
T Consensus 27 Ge~~~l~G~nGsGKSTLl~~i~Gl 50 (236)
T cd03253 27 GKKVAIVGPSGSGKSTILRLLFRF 50 (236)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcc
Confidence 468999999999999999998753
No 234
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.36 E-value=0.071 Score=49.20 Aligned_cols=23 Identities=22% Similarity=0.183 Sum_probs=20.6
Q ss_pred cEEEEEEecCCCchHHHHHHhhc
Q 040913 190 LSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
-.+++|+|..|.|||||++.+..
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~G 50 (234)
T cd03251 28 GETVALVGPSGSGKSTLVNLIPR 50 (234)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 45899999999999999998875
No 235
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=95.35 E-value=0.022 Score=54.55 Aligned_cols=139 Identities=15% Similarity=0.069 Sum_probs=78.3
Q ss_pred CCcccchhhHHHHHHHHhcC--CCCcEEEEEEecCCCchHHHHHHhhcC-cccccccc-----chHHH----HHHHHHHh
Q 040913 167 LDISEFERAREEWFDLLIEG--PIGLSVVAILDSSGFDKTAFAADTYNN-NHVKFYFD-----CLAWI----LDDIIRSL 234 (425)
Q Consensus 167 ~~~vGr~~~~~~l~~~L~~~--~~~~~vi~IvG~gGvGKTtLa~~v~~~-~~~~~~F~-----~~~wv----~~~il~~l 234 (425)
..++|-.++..++-.++... .....-+.|+|+.|+|||+|...+..+ +++.++|= .-+-. ++.|.+|+
T Consensus 24 ~~l~g~~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~~q~~~E~~l~v~Lng~~~~dk~al~~I~rql 103 (408)
T KOG2228|consen 24 INLFGVQDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSDIQENGENFLLVRLNGELQTDKIALKGITRQL 103 (408)
T ss_pred cceeehHHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhhHHhcCCeEEEEEECccchhhHHHHHHHHHHH
Confidence 45889888888888887653 122445678999999999998877765 34555552 11111 66666666
Q ss_pred CCCCCCCccCCCCHHHHHHHHHHHhc------CCeEEEEecccCC----Chh--hHHHHHhhCCCCCCCcEEEEecCChh
Q 040913 235 MPPSRVTVIIGEDYKLKKSILRDFLT------NKKYFIALDDVCH----NIE--IWDDLEEVLPDNQNGSRVLITVINPS 302 (425)
Q Consensus 235 ~~~~~~~~~~~~~~~~l~~~l~~~l~------~kr~LlVLDdvw~----~~~--~~~~l~~~l~~~~~gskIivTTR~~~ 302 (425)
............+..+...++-..|+ +-++.+|+|...- ..+ -++.+-..-....|-+-|-+|||-..
T Consensus 104 ~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Ttrld~ 183 (408)
T KOG2228|consen 104 ALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTTRLDI 183 (408)
T ss_pred HHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeeccccH
Confidence 54433211222333344444555553 2347788877641 111 11211111112345677889998865
Q ss_pred HHH
Q 040913 303 LLT 305 (425)
Q Consensus 303 va~ 305 (425)
.-.
T Consensus 184 lE~ 186 (408)
T KOG2228|consen 184 LEL 186 (408)
T ss_pred HHH
Confidence 443
No 236
>CHL00195 ycf46 Ycf46; Provisional
Probab=95.35 E-value=0.099 Score=53.77 Aligned_cols=93 Identities=13% Similarity=0.085 Sum_probs=51.6
Q ss_pred CCCcccchhhHHHHHHHHhc--------CCCCcEEEEEEecCCCchHHHHHHhhcCccccccc-cchHHHHHHHHHHhCC
Q 040913 166 RLDISEFERAREEWFDLLIE--------GPIGLSVVAILDSSGFDKTAFAADTYNNNHVKFYF-DCLAWILDDIIRSLMP 236 (425)
Q Consensus 166 ~~~~vGr~~~~~~l~~~L~~--------~~~~~~vi~IvG~gGvGKTtLa~~v~~~~~~~~~F-~~~~wv~~~il~~l~~ 236 (425)
-.++-|.+..++.+.+.... +-...+-|.++|++|+|||.+|+.+.+ +..-.| ... .. .+..
T Consensus 227 ~~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~--e~~~~~~~l~---~~----~l~~ 297 (489)
T CHL00195 227 ISDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIAN--DWQLPLLRLD---VG----KLFG 297 (489)
T ss_pred HHHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHH--HhCCCEEEEE---hH----Hhcc
Confidence 34577877766665542211 112356688999999999999999988 333332 110 00 1111
Q ss_pred CCCCCccCCCCHHHHHHHHHHHhcCCeEEEEecccC
Q 040913 237 PSRVTVIIGEDYKLKKSILRDFLTNKKYFIALDDVC 272 (425)
Q Consensus 237 ~~~~~~~~~~~~~~l~~~l~~~l~~kr~LlVLDdvw 272 (425)
.. ...+...+.+.+...-...+++|++|++.
T Consensus 298 ~~-----vGese~~l~~~f~~A~~~~P~IL~IDEID 328 (489)
T CHL00195 298 GI-----VGESESRMRQMIRIAEALSPCILWIDEID 328 (489)
T ss_pred cc-----cChHHHHHHHHHHHHHhcCCcEEEehhhh
Confidence 10 11222333333333334578999999985
No 237
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=95.35 E-value=0.021 Score=55.80 Aligned_cols=26 Identities=12% Similarity=0.087 Sum_probs=23.5
Q ss_pred CCcEEEEEEecCCCchHHHHHHhhcC
Q 040913 188 IGLSVVAILDSSGFDKTAFAADTYNN 213 (425)
Q Consensus 188 ~~~~vi~IvG~gGvGKTtLa~~v~~~ 213 (425)
..+..++|+|++|.|||.+|+.+++.
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~e 171 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKK 171 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHH
Confidence 45789999999999999999999993
No 238
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=95.34 E-value=0.031 Score=54.10 Aligned_cols=85 Identities=16% Similarity=0.061 Sum_probs=46.7
Q ss_pred CCCCcEEEEEEecCCCchHHHHHHhhcCccccccccchHHH------HHHHHHHhCCCCCCC-ccCCCCHHHHHHHHHHH
Q 040913 186 GPIGLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWI------LDDIIRSLMPPSRVT-VIIGEDYKLKKSILRDF 258 (425)
Q Consensus 186 ~~~~~~vi~IvG~gGvGKTtLa~~v~~~~~~~~~F~~~~wv------~~~il~~l~~~~~~~-~~~~~~~~~l~~~l~~~ 258 (425)
+=+.-+++-|.|++|+||||||.++... ....=..++|+ -.....+++.....- .....+.++....+...
T Consensus 51 Glp~G~iteI~G~~GsGKTtLaL~~~~~--~~~~g~~v~yId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~~~~~l 128 (321)
T TIGR02012 51 GLPRGRIIEIYGPESSGKTTLALHAIAE--AQKAGGTAAFIDAEHALDPVYARKLGVDIDNLLVSQPDTGEQALEIAETL 128 (321)
T ss_pred CCcCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEEcccchhHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHH
Confidence 3345679999999999999999886652 21111122233 111223332221100 11123455566666555
Q ss_pred hc-CCeEEEEecccC
Q 040913 259 LT-NKKYFIALDDVC 272 (425)
Q Consensus 259 l~-~kr~LlVLDdvw 272 (425)
++ +.--+||+|-|-
T Consensus 129 i~~~~~~lIVIDSv~ 143 (321)
T TIGR02012 129 VRSGAVDIIVVDSVA 143 (321)
T ss_pred hhccCCcEEEEcchh
Confidence 54 456699999984
No 239
>PRK14738 gmk guanylate kinase; Provisional
Probab=95.30 E-value=0.015 Score=52.79 Aligned_cols=30 Identities=30% Similarity=0.311 Sum_probs=24.9
Q ss_pred HhcCCCCcEEEEEEecCCCchHHHHHHhhc
Q 040913 183 LIEGPIGLSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 183 L~~~~~~~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
+..+......|.|+|++|+|||||++.+.+
T Consensus 6 ~~~~~~~~~~ivi~GpsG~GK~tl~~~L~~ 35 (206)
T PRK14738 6 LFNKPAKPLLVVISGPSGVGKDAVLARMRE 35 (206)
T ss_pred ccCCCCCCeEEEEECcCCCCHHHHHHHHHh
Confidence 444445678899999999999999999876
No 240
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=95.30 E-value=0.013 Score=51.75 Aligned_cols=23 Identities=13% Similarity=0.216 Sum_probs=20.2
Q ss_pred EEEEEEecCCCchHHHHHHhhcC
Q 040913 191 SVVAILDSSGFDKTAFAADTYNN 213 (425)
Q Consensus 191 ~vi~IvG~gGvGKTtLa~~v~~~ 213 (425)
.++.|+|+.|+|||||++.+...
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 37899999999999999998663
No 241
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=95.28 E-value=0.015 Score=49.38 Aligned_cols=22 Identities=23% Similarity=0.296 Sum_probs=20.1
Q ss_pred EEEEEEecCCCchHHHHHHhhc
Q 040913 191 SVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 191 ~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
++|.|+|..|+|||||++.+.+
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~ 22 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLIN 22 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4899999999999999999988
No 242
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.28 E-value=1.1 Score=44.35 Aligned_cols=23 Identities=13% Similarity=0.205 Sum_probs=20.3
Q ss_pred cEEEEEEecCCCchHHHHHHhhc
Q 040913 190 LSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
.+++.++|+.|+||||++..+..
T Consensus 206 ~~ii~lvGptGvGKTTt~akLA~ 228 (407)
T PRK12726 206 HRIISLIGQTGVGKTTTLVKLGW 228 (407)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 67999999999999998877764
No 243
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=95.28 E-value=0.042 Score=50.38 Aligned_cols=23 Identities=22% Similarity=0.222 Sum_probs=20.5
Q ss_pred cEEEEEEecCCCchHHHHHHhhc
Q 040913 190 LSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
-.+++|+|..|.|||||.+.+..
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~l~G 48 (223)
T TIGR03740 26 NSVYGLLGPNGAGKSTLLKMITG 48 (223)
T ss_pred CcEEEEECCCCCCHHHHHHHHhC
Confidence 45899999999999999998875
No 244
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=95.26 E-value=0.042 Score=57.19 Aligned_cols=48 Identities=10% Similarity=-0.053 Sum_probs=36.5
Q ss_pred CCCcccchhhHHHHHHHHhcCCCCcEEEEEEecCCCchHHHHHHhhcC
Q 040913 166 RLDISEFERAREEWFDLLIEGPIGLSVVAILDSSGFDKTAFAADTYNN 213 (425)
Q Consensus 166 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLa~~v~~~ 213 (425)
-..++|....+.++++.+..-...-.-|-|+|..|+||++||+.+++.
T Consensus 203 f~~~ig~s~~~~~~~~~~~~~A~~~~pvlI~GE~GtGK~~lA~aiH~~ 250 (520)
T PRK10820 203 FSQIVAVSPKMRQVVEQARKLAMLDAPLLITGDTGTGKDLLAYACHLR 250 (520)
T ss_pred ccceeECCHHHHHHHHHHHHHhCCCCCEEEECCCCccHHHHHHHHHHh
Confidence 346899988888888777542222334779999999999999998763
No 245
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=95.26 E-value=0.028 Score=48.25 Aligned_cols=44 Identities=18% Similarity=0.181 Sum_probs=29.9
Q ss_pred EEEEEecCCCchHHHHHHhhcCccccccccchHHHHHHHHHHhCCC
Q 040913 192 VVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWILDDIIRSLMPP 237 (425)
Q Consensus 192 vi~IvG~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~~il~~l~~~ 237 (425)
+|.|-|.+|+||||+|+.+.++ ..-.|-..-.++++|.+..+-.
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~--~gl~~vsaG~iFR~~A~e~gms 45 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEH--LGLKLVSAGTIFREMARERGMS 45 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHH--hCCceeeccHHHHHHHHHcCCC
Confidence 6899999999999999999883 3333322223355666655443
No 246
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=95.26 E-value=0.018 Score=61.48 Aligned_cols=126 Identities=10% Similarity=0.069 Sum_probs=69.7
Q ss_pred CCCcccchhhHHHHHHHHhcCCCCcEEEEEEecCCCchHHHHHHhhcCccccc-ccc-----chHHHHHHHHHHhCCCCC
Q 040913 166 RLDISEFERAREEWFDLLIEGPIGLSVVAILDSSGFDKTAFAADTYNNNHVKF-YFD-----CLAWILDDIIRSLMPPSR 239 (425)
Q Consensus 166 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLa~~v~~~~~~~~-~F~-----~~~wv~~~il~~l~~~~~ 239 (425)
-+.++||++++.++++.|.....+-+| .+|.+|||||+++.-+.. ++.. .-+ ..++ .-++-.-+....
T Consensus 169 lDPvIGRd~EI~r~iqIL~RR~KNNPv--LiGEpGVGKTAIvEGLA~--rIv~g~VP~~L~~~~i~-sLD~g~LvAGak- 242 (786)
T COG0542 169 LDPVIGRDEEIRRTIQILSRRTKNNPV--LVGEPGVGKTAIVEGLAQ--RIVNGDVPESLKDKRIY-SLDLGSLVAGAK- 242 (786)
T ss_pred CCCCcChHHHHHHHHHHHhccCCCCCe--EecCCCCCHHHHHHHHHH--HHhcCCCCHHHcCCEEE-EecHHHHhcccc-
Confidence 345899999999999999987655554 489999999997655544 2211 110 0111 011111111111
Q ss_pred CCccCCCCHHHHHHHHHHHhc-CCeEEEEecccCC-----C-----hhhHHHHHhhCCCCCCCcEEEEecCChh
Q 040913 240 VTVIIGEDYKLKKSILRDFLT-NKKYFIALDDVCH-----N-----IEIWDDLEEVLPDNQNGSRVLITVINPS 302 (425)
Q Consensus 240 ~~~~~~~~~~~l~~~l~~~l~-~kr~LlVLDdvw~-----~-----~~~~~~l~~~l~~~~~gskIivTTR~~~ 302 (425)
--.+.++....+.+.++ .++..|++|.+-. . -+.-+-++++|..+. --.|=.||=++.
T Consensus 243 ----yRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLARGe-L~~IGATT~~EY 311 (786)
T COG0542 243 ----YRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALARGE-LRCIGATTLDEY 311 (786)
T ss_pred ----ccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHhcCC-eEEEEeccHHHH
Confidence 11345555555555554 4589999999841 1 112334555554332 234556665544
No 247
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.26 E-value=0.081 Score=48.65 Aligned_cols=23 Identities=26% Similarity=0.231 Sum_probs=20.5
Q ss_pred cEEEEEEecCCCchHHHHHHhhc
Q 040913 190 LSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
-.+++|+|..|.|||||.+.+..
T Consensus 29 G~~~~i~G~nGsGKSTLl~~l~G 51 (229)
T cd03254 29 GETVAIVGPTGAGKTTLINLLMR 51 (229)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 45799999999999999999875
No 248
>PLN02318 phosphoribulokinase/uridine kinase
Probab=95.24 E-value=0.022 Score=59.01 Aligned_cols=34 Identities=29% Similarity=0.389 Sum_probs=27.6
Q ss_pred HHHHHhcCCCCcEEEEEEecCCCchHHHHHHhhc
Q 040913 179 WFDLLIEGPIGLSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 179 l~~~L~~~~~~~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
.++.+........+|+|.|..|+||||||+.+..
T Consensus 54 a~qlL~~~~~~riIIGIaGpSGSGKTTLAk~Lag 87 (656)
T PLN02318 54 ACQLLAQKNDGIILVGVAGPSGAGKTVFTEKVLN 87 (656)
T ss_pred HHHHHHhcCCCeEEEEEECCCCCcHHHHHHHHHh
Confidence 3445555555689999999999999999999876
No 249
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.23 E-value=0.18 Score=50.53 Aligned_cols=23 Identities=26% Similarity=0.189 Sum_probs=20.4
Q ss_pred cEEEEEEecCCCchHHHHHHhhc
Q 040913 190 LSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
..++.++|++|+||||++..+..
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~ 245 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAA 245 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 57899999999999999988765
No 250
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=95.22 E-value=0.062 Score=56.94 Aligned_cols=24 Identities=21% Similarity=0.246 Sum_probs=21.2
Q ss_pred CcEEEEEEecCCCchHHHHHHhhc
Q 040913 189 GLSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 189 ~~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
.-..++|+|..|.|||||++.+..
T Consensus 375 ~G~~vaIvG~SGsGKSTL~~lL~g 398 (588)
T PRK11174 375 AGQRIALVGPSGAGKTSLLNALLG 398 (588)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 457899999999999999999865
No 251
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=95.22 E-value=0.052 Score=56.67 Aligned_cols=24 Identities=29% Similarity=0.158 Sum_probs=21.3
Q ss_pred CcEEEEEEecCCCchHHHHHHhhc
Q 040913 189 GLSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 189 ~~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
.-..++|+|+.|+|||||++.+..
T Consensus 360 ~G~~vaIvG~SGsGKSTLl~lL~g 383 (529)
T TIGR02868 360 PGERVAILGPSGSGKSTLLMLLTG 383 (529)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 457899999999999999999864
No 252
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=95.20 E-value=0.052 Score=57.49 Aligned_cols=24 Identities=21% Similarity=0.164 Sum_probs=20.9
Q ss_pred CcEEEEEEecCCCchHHHHHHhhc
Q 040913 189 GLSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 189 ~~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
.-..++|+|..|.|||||++.+..
T Consensus 360 ~G~~v~IvG~sGsGKSTLl~lL~g 383 (588)
T PRK13657 360 PGQTVAIVGPTGAGKSTLINLLQR 383 (588)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 356799999999999999999864
No 253
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=95.20 E-value=0.064 Score=48.35 Aligned_cols=24 Identities=21% Similarity=0.288 Sum_probs=21.5
Q ss_pred cEEEEEEecCCCchHHHHHHhhcC
Q 040913 190 LSVVAILDSSGFDKTAFAADTYNN 213 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~~ 213 (425)
-.+++|+|..|.|||||.+.+...
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~ 49 (200)
T cd03217 26 GEVHALMGPNGSGKSTLAKTIMGH 49 (200)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999998774
No 254
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=95.18 E-value=0.017 Score=50.81 Aligned_cols=24 Identities=25% Similarity=0.222 Sum_probs=21.7
Q ss_pred CcEEEEEEecCCCchHHHHHHhhc
Q 040913 189 GLSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 189 ~~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
...+++|+|..|+|||||++.+..
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~ 28 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIP 28 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHH
Confidence 467999999999999999998886
No 255
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=95.18 E-value=0.015 Score=51.33 Aligned_cols=22 Identities=18% Similarity=0.314 Sum_probs=20.5
Q ss_pred EEEEEEecCCCchHHHHHHhhc
Q 040913 191 SVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 191 ~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
++|.|+|+.|+|||||++.+.+
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~ 23 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLE 23 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHc
Confidence 4789999999999999999987
No 256
>PRK09354 recA recombinase A; Provisional
Probab=95.17 E-value=0.037 Score=54.07 Aligned_cols=91 Identities=16% Similarity=0.011 Sum_probs=49.7
Q ss_pred HHHHh-cCCCCcEEEEEEecCCCchHHHHHHhhcCccccccccchHHH------HHHHHHHhCCCCCCC-ccCCCCHHHH
Q 040913 180 FDLLI-EGPIGLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWI------LDDIIRSLMPPSRVT-VIIGEDYKLK 251 (425)
Q Consensus 180 ~~~L~-~~~~~~~vi~IvG~gGvGKTtLa~~v~~~~~~~~~F~~~~wv------~~~il~~l~~~~~~~-~~~~~~~~~l 251 (425)
-.+|- .+=+.-+++-|+|++|+|||||+.++.... ...=...+|+ -.....+++.....- .....+.++.
T Consensus 49 D~~LG~GGip~G~IteI~G~~GsGKTtLal~~~~~~--~~~G~~~~yId~E~s~~~~~a~~lGvdld~lli~qp~~~Eq~ 126 (349)
T PRK09354 49 DIALGIGGLPRGRIVEIYGPESSGKTTLALHAIAEA--QKAGGTAAFIDAEHALDPVYAKKLGVDIDNLLVSQPDTGEQA 126 (349)
T ss_pred HHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHH--HHcCCcEEEECCccchHHHHHHHcCCCHHHeEEecCCCHHHH
Confidence 33444 333456788999999999999998876522 1111223333 112233333221100 1112245566
Q ss_pred HHHHHHHhc-CCeEEEEecccC
Q 040913 252 KSILRDFLT-NKKYFIALDDVC 272 (425)
Q Consensus 252 ~~~l~~~l~-~kr~LlVLDdvw 272 (425)
...+...++ ++--+||+|-|-
T Consensus 127 l~i~~~li~s~~~~lIVIDSva 148 (349)
T PRK09354 127 LEIADTLVRSGAVDLIVVDSVA 148 (349)
T ss_pred HHHHHHHhhcCCCCEEEEeChh
Confidence 666666554 456699999985
No 257
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=95.17 E-value=0.13 Score=53.44 Aligned_cols=112 Identities=21% Similarity=0.193 Sum_probs=60.7
Q ss_pred cEEEEEEecCCCchHHHHHHhhcCc-----ccc-------ccccchH-----------HH-----------HHHHHHHhC
Q 040913 190 LSVVAILDSSGFDKTAFAADTYNNN-----HVK-------FYFDCLA-----------WI-----------LDDIIRSLM 235 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~~~-----~~~-------~~F~~~~-----------wv-----------~~~il~~l~ 235 (425)
-.-|+|+|+.|+|||||.+.+.... .+. .+|+... |+ .+..+..+.
T Consensus 348 g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~v~igyf~Q~~~~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f~ 427 (530)
T COG0488 348 GDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGYFDQHRDELDPDKTVLEELSEGFPDGDEQEVRAYLGRFG 427 (530)
T ss_pred CCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCceEEEEEEehhhhcCccCcHHHHHHhhCccccHHHHHHHHHHcC
Confidence 4568999999999999999984321 010 1222111 11 333333333
Q ss_pred CCCCCC--ccCCCCHHH-HHHHHHHHhcCCeEEEEecccCCCh---hhHHHHHhhCCCCCCCcEEEEecCChhHH
Q 040913 236 PPSRVT--VIIGEDYKL-KKSILRDFLTNKKYFIALDDVCHNI---EIWDDLEEVLPDNQNGSRVLITVINPSLL 304 (425)
Q Consensus 236 ~~~~~~--~~~~~~~~~-l~~~l~~~l~~kr~LlVLDdvw~~~---~~~~~l~~~l~~~~~gskIivTTR~~~va 304 (425)
-+.... .....+..+ ..-.+...+-.+.-++|||.-- |. +..+.+..+|.+-. |+ ||+.|.+..-.
T Consensus 428 F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPT-NhLDi~s~~aLe~aL~~f~-Gt-vl~VSHDr~Fl 499 (530)
T COG0488 428 FTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPT-NHLDIESLEALEEALLDFE-GT-VLLVSHDRYFL 499 (530)
T ss_pred CChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCC-ccCCHHHHHHHHHHHHhCC-Ce-EEEEeCCHHHH
Confidence 322211 112223333 3344555556788899999875 43 45555666665433 44 66667665543
No 258
>PRK10867 signal recognition particle protein; Provisional
Probab=95.17 E-value=0.041 Score=55.57 Aligned_cols=23 Identities=22% Similarity=0.209 Sum_probs=18.8
Q ss_pred CcEEEEEEecCCCchHHHHHHhh
Q 040913 189 GLSVVAILDSSGFDKTAFAADTY 211 (425)
Q Consensus 189 ~~~vi~IvG~gGvGKTtLa~~v~ 211 (425)
.+.+|.++|.+|+||||.+..+.
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA 121 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLA 121 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHH
Confidence 47899999999999999655443
No 259
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=95.16 E-value=0.012 Score=52.44 Aligned_cols=22 Identities=23% Similarity=0.123 Sum_probs=20.0
Q ss_pred EEEEEecCCCchHHHHHHhhcC
Q 040913 192 VVAILDSSGFDKTAFAADTYNN 213 (425)
Q Consensus 192 vi~IvG~gGvGKTtLa~~v~~~ 213 (425)
+|+|.|.+|+||||||+.+...
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~ 22 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRI 22 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999883
No 260
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=95.15 E-value=0.06 Score=58.23 Aligned_cols=23 Identities=22% Similarity=0.140 Sum_probs=20.5
Q ss_pred cEEEEEEecCCCchHHHHHHhhc
Q 040913 190 LSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
-..++|+|..|+|||||++.+..
T Consensus 491 G~~iaIvG~sGsGKSTLlklL~g 513 (694)
T TIGR03375 491 GEKVAIIGRIGSGKSTLLKLLLG 513 (694)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 46799999999999999998864
No 261
>PRK00131 aroK shikimate kinase; Reviewed
Probab=95.14 E-value=0.016 Score=50.62 Aligned_cols=23 Identities=9% Similarity=0.037 Sum_probs=21.0
Q ss_pred cEEEEEEecCCCchHHHHHHhhc
Q 040913 190 LSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
...|.++|++|+||||+|+.+..
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~ 26 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAK 26 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHH
Confidence 45789999999999999999988
No 262
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.14 E-value=0.13 Score=52.14 Aligned_cols=53 Identities=19% Similarity=0.147 Sum_probs=38.9
Q ss_pred CCCCCcccchh---hHHHHHHHHhcCC-------CCcEEEEEEecCCCchHHHHHHhhcCccc
Q 040913 164 QPRLDISEFER---AREEWFDLLIEGP-------IGLSVVAILDSSGFDKTAFAADTYNNNHV 216 (425)
Q Consensus 164 ~~~~~~vGr~~---~~~~l~~~L~~~~-------~~~~vi~IvG~gGvGKTtLa~~v~~~~~~ 216 (425)
+.-.++-|-|+ +.++|++.|.++. .-++=|..+|++|.|||-||++|.-...|
T Consensus 301 v~F~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~V 363 (752)
T KOG0734|consen 301 VTFEDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGV 363 (752)
T ss_pred cccccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCC
Confidence 33455667664 5566788888763 23566789999999999999999985444
No 263
>PRK00625 shikimate kinase; Provisional
Probab=95.13 E-value=0.015 Score=51.32 Aligned_cols=21 Identities=14% Similarity=0.145 Sum_probs=19.1
Q ss_pred EEEEEecCCCchHHHHHHhhc
Q 040913 192 VVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 192 vi~IvG~gGvGKTtLa~~v~~ 212 (425)
.|.++||+|+||||+++.+.+
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~ 22 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAK 22 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 378999999999999999977
No 264
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=95.11 E-value=0.034 Score=50.82 Aligned_cols=32 Identities=25% Similarity=0.195 Sum_probs=24.2
Q ss_pred HHHhcCCCCcEEEEEEecCCCchHHHHHHhhc
Q 040913 181 DLLIEGPIGLSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 181 ~~L~~~~~~~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
++|..+=..-.++.|.|.+|+|||||+.++..
T Consensus 10 ~~l~GGi~~g~i~~i~G~~GsGKT~l~~~~a~ 41 (218)
T cd01394 10 ELLGGGVERGTVTQVYGPPGTGKTNIAIQLAV 41 (218)
T ss_pred HHhcCCccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 33333334568899999999999999988765
No 265
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=95.11 E-value=0.046 Score=59.48 Aligned_cols=97 Identities=19% Similarity=0.162 Sum_probs=56.5
Q ss_pred CCCCCCcccchhhHHHHHHHHhcC-----------CCCcEEEEEEecCCCchHHHHHHhhcCccccccccchHHHHHHHH
Q 040913 163 GQPRLDISEFERAREEWFDLLIEG-----------PIGLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWILDDII 231 (425)
Q Consensus 163 ~~~~~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~IvG~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~~il 231 (425)
...-.++.|.+..++.|.+.+.-. -...+-+.++|++|+|||+||+.+.+ +....|-..- ..+++
T Consensus 449 ~~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~--e~~~~fi~v~--~~~l~ 524 (733)
T TIGR01243 449 NVRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVAT--ESGANFIAVR--GPEIL 524 (733)
T ss_pred ccchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHH--hcCCCEEEEe--hHHHh
Confidence 334456788888888887765421 12345578899999999999999998 4443441100 11111
Q ss_pred HHhCCCCCCCccCCCCHHHHHHHHHHHhcCCeEEEEecccC
Q 040913 232 RSLMPPSRVTVIIGEDYKLKKSILRDFLTNKKYFIALDDVC 272 (425)
Q Consensus 232 ~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~kr~LlVLDdvw 272 (425)
... ...+...+...+...-....++|++|++.
T Consensus 525 ~~~---------vGese~~i~~~f~~A~~~~p~iifiDEid 556 (733)
T TIGR01243 525 SKW---------VGESEKAIREIFRKARQAAPAIIFFDEID 556 (733)
T ss_pred hcc---------cCcHHHHHHHHHHHHHhcCCEEEEEEChh
Confidence 111 11122333333333334577999999984
No 266
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=95.10 E-value=0.013 Score=51.87 Aligned_cols=21 Identities=48% Similarity=0.526 Sum_probs=19.5
Q ss_pred EEEEEecCCCchHHHHHHhhc
Q 040913 192 VVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 192 vi~IvG~gGvGKTtLa~~v~~ 212 (425)
+|+|.|.+|+||||||+.+..
T Consensus 1 ii~i~G~sgsGKttla~~l~~ 21 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSN 21 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999887
No 267
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=95.07 E-value=0.024 Score=53.07 Aligned_cols=20 Identities=15% Similarity=0.368 Sum_probs=18.3
Q ss_pred EEEEecCCCchHHHHHHhhc
Q 040913 193 VAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 193 i~IvG~gGvGKTtLa~~v~~ 212 (425)
|.++|++|+||||+|+.+..
T Consensus 2 Ivl~G~pGSGKST~a~~La~ 21 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAK 21 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHH
Confidence 67899999999999998876
No 268
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=95.07 E-value=0.033 Score=53.23 Aligned_cols=24 Identities=17% Similarity=-0.006 Sum_probs=20.9
Q ss_pred CCcEEEEEEecCCCchHHHHHHhh
Q 040913 188 IGLSVVAILDSSGFDKTAFAADTY 211 (425)
Q Consensus 188 ~~~~vi~IvG~gGvGKTtLa~~v~ 211 (425)
..+.+|+|.|..|+||||+|+.+.
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~ 83 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQ 83 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHH
Confidence 457899999999999999997653
No 269
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=95.04 E-value=0.083 Score=57.31 Aligned_cols=24 Identities=38% Similarity=0.302 Sum_probs=21.3
Q ss_pred CcEEEEEEecCCCchHHHHHHhhc
Q 040913 189 GLSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 189 ~~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
.-..++|+|+.|.|||||++.+..
T Consensus 506 ~Ge~vaIvG~SGsGKSTLl~lL~g 529 (711)
T TIGR00958 506 PGEVVALVGPSGSGKSTVAALLQN 529 (711)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh
Confidence 456899999999999999998865
No 270
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=95.04 E-value=0.015 Score=49.26 Aligned_cols=21 Identities=24% Similarity=0.237 Sum_probs=19.4
Q ss_pred EEEEEecCCCchHHHHHHhhc
Q 040913 192 VVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 192 vi~IvG~gGvGKTtLa~~v~~ 212 (425)
+|.|.|.+|+||||+|+.+..
T Consensus 1 ~I~i~G~~GsGKst~a~~la~ 21 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAK 21 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998886
No 271
>PRK06217 hypothetical protein; Validated
Probab=95.02 E-value=0.016 Score=51.55 Aligned_cols=22 Identities=23% Similarity=0.241 Sum_probs=19.9
Q ss_pred EEEEEecCCCchHHHHHHhhcC
Q 040913 192 VVAILDSSGFDKTAFAADTYNN 213 (425)
Q Consensus 192 vi~IvG~gGvGKTtLa~~v~~~ 213 (425)
-|.|.|++|+||||||+.+...
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~ 24 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAER 24 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4889999999999999999874
No 272
>PRK00889 adenylylsulfate kinase; Provisional
Probab=95.01 E-value=0.021 Score=50.30 Aligned_cols=23 Identities=26% Similarity=0.073 Sum_probs=21.1
Q ss_pred cEEEEEEecCCCchHHHHHHhhc
Q 040913 190 LSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
..+|.|+|++|+||||+|+.+..
T Consensus 4 g~~i~~~G~~GsGKST~a~~la~ 26 (175)
T PRK00889 4 GVTVWFTGLSGAGKTTIARALAE 26 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999999887
No 273
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.01 E-value=0.021 Score=52.42 Aligned_cols=113 Identities=12% Similarity=0.054 Sum_probs=59.4
Q ss_pred cEEEEEEecCCCchHHHHHHhhcCccccccccchHHH-------HHHHHHHhCCCCCCCccCCCCHHHHHHHHHHHhc--
Q 040913 190 LSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWI-------LDDIIRSLMPPSRVTVIIGEDYKLKKSILRDFLT-- 260 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~~~~~~~~F~~~~wv-------~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~l~-- 260 (425)
..++.|.|+.|.||||+.+.+....- ..+-.+.+|. +..|...+...... .....+...=...+...++
T Consensus 31 g~~~~itG~N~~GKStll~~i~~~~~-la~~G~~v~a~~~~~~~~~~i~~~~~~~d~~-~~~~StF~~e~~~~~~il~~~ 108 (222)
T cd03287 31 GYCQIITGPNMGGKSSYIRQVALITI-MAQIGSFVPASSATLSIFDSVLTRMGASDSI-QHGMSTFMVELSETSHILSNC 108 (222)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH-HHhCCCEEEcCceEEeccceEEEEecCcccc-ccccchHHHHHHHHHHHHHhC
Confidence 46788999999999999988765211 1111111111 23333333332221 1111122222333344443
Q ss_pred CCeEEEEecccCC--C-hh--h-HHHHHhhCCCCCCCcEEEEecCChhHHH
Q 040913 261 NKKYFIALDDVCH--N-IE--I-WDDLEEVLPDNQNGSRVLITVINPSLLT 305 (425)
Q Consensus 261 ~kr~LlVLDdvw~--~-~~--~-~~~l~~~l~~~~~gskIivTTR~~~va~ 305 (425)
+++-|++||..-. + .+ . -..+...+... .++.+|++|....++.
T Consensus 109 ~~~sLvllDE~~~gT~~~d~~~i~~~il~~l~~~-~~~~~i~~TH~~~l~~ 158 (222)
T cd03287 109 TSRSLVILDELGRGTSTHDGIAIAYATLHYLLEE-KKCLVLFVTHYPSLGE 158 (222)
T ss_pred CCCeEEEEccCCCCCChhhHHHHHHHHHHHHHhc-cCCeEEEEcccHHHHH
Confidence 5789999999741 1 11 1 11223333332 4789999999988765
No 274
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.00 E-value=0.063 Score=49.58 Aligned_cols=24 Identities=21% Similarity=0.127 Sum_probs=21.3
Q ss_pred cEEEEEEecCCCchHHHHHHhhcC
Q 040913 190 LSVVAILDSSGFDKTAFAADTYNN 213 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~~ 213 (425)
-.+++|+|..|.|||||.+.+...
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~l~g~ 49 (232)
T cd03300 26 GEFFTLLGPSGCGKTTLLRLIAGF 49 (232)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 468999999999999999998764
No 275
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=95.00 E-value=0.017 Score=48.79 Aligned_cols=22 Identities=14% Similarity=0.321 Sum_probs=19.7
Q ss_pred EEEEEecCCCchHHHHHHhhcC
Q 040913 192 VVAILDSSGFDKTAFAADTYNN 213 (425)
Q Consensus 192 vi~IvG~gGvGKTtLa~~v~~~ 213 (425)
.|.|+|+.|+|||||++.+...
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhc
Confidence 3789999999999999999883
No 276
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=94.99 E-value=0.02 Score=46.56 Aligned_cols=22 Identities=23% Similarity=0.409 Sum_probs=19.7
Q ss_pred EEEEecCCCchHHHHHHhhcCc
Q 040913 193 VAILDSSGFDKTAFAADTYNNN 214 (425)
Q Consensus 193 i~IvG~gGvGKTtLa~~v~~~~ 214 (425)
|.|+|..|+|||||.+.+.+.+
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~~ 23 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGGE 23 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEECcCCCCHHHHHHHHhcCC
Confidence 6799999999999999998754
No 277
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.97 E-value=0.095 Score=47.72 Aligned_cols=26 Identities=23% Similarity=0.254 Sum_probs=22.7
Q ss_pred cEEEEEEecCCCchHHHHHHhhcCcc
Q 040913 190 LSVVAILDSSGFDKTAFAADTYNNNH 215 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~~~~ 215 (425)
--+-+|.|+.|+||||||..+.-++.
T Consensus 30 GEvhaiMGPNGsGKSTLa~~i~G~p~ 55 (251)
T COG0396 30 GEVHAIMGPNGSGKSTLAYTIMGHPK 55 (251)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 45778999999999999999988774
No 278
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=94.96 E-value=0.5 Score=51.54 Aligned_cols=114 Identities=15% Similarity=0.080 Sum_probs=56.3
Q ss_pred cEEEEEEecCCCchHHHHHHhhcCc---cccccccchH--HH--HHHHHHHhCCCCCCCccCCCCHHHHHHHHHHHhc--
Q 040913 190 LSVVAILDSSGFDKTAFAADTYNNN---HVKFYFDCLA--WI--LDDIIRSLMPPSRVTVIIGEDYKLKKSILRDFLT-- 260 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~~~---~~~~~F~~~~--wv--~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~l~-- 260 (425)
..++.|.|+.|.|||||.+.+.... ....+.++.. .+ +..+...+...... .....+...-+..+...+.
T Consensus 322 ~~~liItGpNg~GKSTlLK~i~~~~l~aq~G~~Vpa~~~~~~~~~d~i~~~i~~~~si-~~~LStfS~~m~~~~~il~~~ 400 (771)
T TIGR01069 322 KRVLAITGPNTGGKTVTLKTLGLLALMFQSGIPIPANEHSEIPYFEEIFADIGDEQSI-EQNLSTFSGHMKNISAILSKT 400 (771)
T ss_pred ceEEEEECCCCCCchHHHHHHHHHHHHHHhCCCccCCccccccchhheeeecChHhHH-hhhhhHHHHHHHHHHHHHHhc
Confidence 4789999999999999998876521 0010111100 00 22222222111100 0000111111112223332
Q ss_pred CCeEEEEecccCC--ChhhHHHH----HhhCCCCCCCcEEEEecCChhHHHH
Q 040913 261 NKKYFIALDDVCH--NIEIWDDL----EEVLPDNQNGSRVLITVINPSLLTS 306 (425)
Q Consensus 261 ~kr~LlVLDdvw~--~~~~~~~l----~~~l~~~~~gskIivTTR~~~va~~ 306 (425)
..+-|++||..-. +...-..+ ...+. ..|+.+|+||....+...
T Consensus 401 ~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~--~~g~~viitTH~~eL~~~ 450 (771)
T TIGR01069 401 TENSLVLFDELGAGTDPDEGSALAISILEYLL--KQNAQVLITTHYKELKAL 450 (771)
T ss_pred CCCcEEEecCCCCCCCHHHHHHHHHHHHHHHH--hcCCEEEEECChHHHHHH
Confidence 4789999999862 12222222 22222 357899999999887653
No 279
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=94.95 E-value=0.074 Score=57.69 Aligned_cols=24 Identities=25% Similarity=0.165 Sum_probs=20.9
Q ss_pred CcEEEEEEecCCCchHHHHHHhhc
Q 040913 189 GLSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 189 ~~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
.-..++|+|..|+|||||++.+..
T Consensus 504 ~Ge~vaIvG~sGsGKSTLlklL~g 527 (710)
T TIGR03796 504 PGQRVALVGGSGSGKSTIAKLVAG 527 (710)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 346899999999999999999864
No 280
>PRK13947 shikimate kinase; Provisional
Probab=94.93 E-value=0.018 Score=50.39 Aligned_cols=21 Identities=14% Similarity=0.184 Sum_probs=19.3
Q ss_pred EEEEEecCCCchHHHHHHhhc
Q 040913 192 VVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 192 vi~IvG~gGvGKTtLa~~v~~ 212 (425)
-|.|+|++|+||||+|+.+.+
T Consensus 3 ~I~l~G~~GsGKst~a~~La~ 23 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVAT 23 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHH
Confidence 378999999999999999987
No 281
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=94.91 E-value=0.069 Score=57.90 Aligned_cols=23 Identities=26% Similarity=0.176 Sum_probs=20.5
Q ss_pred cEEEEEEecCCCchHHHHHHhhc
Q 040913 190 LSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
-..++|+|..|+|||||++.+..
T Consensus 500 G~~vaIvG~SGsGKSTLlklL~g 522 (708)
T TIGR01193 500 NSKTTIVGMSGSGKSTLAKLLVG 522 (708)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 46799999999999999999864
No 282
>PRK05439 pantothenate kinase; Provisional
Probab=94.90 E-value=0.036 Score=53.44 Aligned_cols=25 Identities=16% Similarity=-0.016 Sum_probs=22.3
Q ss_pred CCcEEEEEEecCCCchHHHHHHhhc
Q 040913 188 IGLSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 188 ~~~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
...-+|+|.|.+|+||||+|+.+..
T Consensus 84 ~~~~iIgIaG~~gsGKSTla~~L~~ 108 (311)
T PRK05439 84 KVPFIIGIAGSVAVGKSTTARLLQA 108 (311)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4578999999999999999988765
No 283
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=94.88 E-value=0.081 Score=55.26 Aligned_cols=24 Identities=21% Similarity=0.149 Sum_probs=21.1
Q ss_pred CcEEEEEEecCCCchHHHHHHhhc
Q 040913 189 GLSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 189 ~~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
.-..++|+|..|.|||||++.+..
T Consensus 347 ~G~~~~ivG~sGsGKSTL~~ll~g 370 (529)
T TIGR02857 347 PGERVALVGPSGAGKSTLLNLLLG 370 (529)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 356899999999999999998865
No 284
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=94.87 E-value=0.044 Score=55.07 Aligned_cols=79 Identities=8% Similarity=0.153 Sum_probs=45.6
Q ss_pred cEEEEEEecCCCchHHHHHHhhcCccccccccchHHH--------HHHHHHHhCCCCCCC------ccCCCCH------H
Q 040913 190 LSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWI--------LDDIIRSLMPPSRVT------VIIGEDY------K 249 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~~~~~~~~F~~~~wv--------~~~il~~l~~~~~~~------~~~~~~~------~ 249 (425)
-..++|+|..|+|||||++.+.+.... +..+.+ ..+++..+....... ...+... .
T Consensus 162 GqrigI~G~sG~GKSTLL~~I~~~~~~----dv~Vi~lIGER~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~~a~ 237 (444)
T PRK08972 162 GQRMGLFAGSGVGKSVLLGMMTRGTTA----DVIVVGLVGERGREVKEFIEEILGEEGRARSVVVAAPADTSPLMRLKGC 237 (444)
T ss_pred CCEEEEECCCCCChhHHHHHhccCCCC----CEEEEEEEcCChHHHHHHHHHhhccCCcccEEEEEECCCCCHHHHHHHH
Confidence 467899999999999999999873221 222222 555555543332111 0111111 1
Q ss_pred HHHHHHHHHh--cCCeEEEEecccC
Q 040913 250 LKKSILRDFL--TNKKYFIALDDVC 272 (425)
Q Consensus 250 ~l~~~l~~~l--~~kr~LlVLDdvw 272 (425)
...-.+.+++ +|+++|+++||+-
T Consensus 238 ~~A~tiAEyfrd~G~~VLl~~DslT 262 (444)
T PRK08972 238 ETATTIAEYFRDQGLNVLLLMDSLT 262 (444)
T ss_pred HHHHHHHHHHHHcCCCEEEEEcChH
Confidence 1222344444 5899999999994
No 285
>PRK14974 cell division protein FtsY; Provisional
Probab=94.87 E-value=0.099 Score=51.07 Aligned_cols=24 Identities=21% Similarity=0.152 Sum_probs=19.9
Q ss_pred CcEEEEEEecCCCchHHHHHHhhc
Q 040913 189 GLSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 189 ~~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
...+|.++|++|+||||++..+..
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~ 162 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAY 162 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHH
Confidence 468999999999999996666554
No 286
>PRK00300 gmk guanylate kinase; Provisional
Probab=94.86 E-value=0.02 Score=51.79 Aligned_cols=24 Identities=13% Similarity=0.181 Sum_probs=21.6
Q ss_pred cEEEEEEecCCCchHHHHHHhhcC
Q 040913 190 LSVVAILDSSGFDKTAFAADTYNN 213 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~~ 213 (425)
-.+|+|+|+.|+|||||++.+...
T Consensus 5 g~~i~i~G~sGsGKstl~~~l~~~ 28 (205)
T PRK00300 5 GLLIVLSGPSGAGKSTLVKALLER 28 (205)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 468999999999999999999874
No 287
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=94.83 E-value=0.13 Score=52.01 Aligned_cols=24 Identities=21% Similarity=0.170 Sum_probs=21.1
Q ss_pred CcEEEEEEecCCCchHHHHHHhhc
Q 040913 189 GLSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 189 ~~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
.+.+|.++|.+|+||||++..+..
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~ 117 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLAR 117 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH
Confidence 478999999999999999887765
No 288
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=94.82 E-value=0.046 Score=50.77 Aligned_cols=38 Identities=16% Similarity=0.149 Sum_probs=29.2
Q ss_pred hHHHHHHHHhcCCCCcEEEEEEecCCCchHHHHHHhhc
Q 040913 175 AREEWFDLLIEGPIGLSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 175 ~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
....+++.+.....+..+|+|.|++|+||+||...+..
T Consensus 14 ~~~~ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~ 51 (266)
T PF03308_consen 14 EARELLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIR 51 (266)
T ss_dssp HHHHHHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHH
Confidence 45677777776655688999999999999999877655
No 289
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=94.81 E-value=0.061 Score=54.27 Aligned_cols=24 Identities=17% Similarity=0.141 Sum_probs=19.6
Q ss_pred CcEEEEEEecCCCchHHHHHHhhc
Q 040913 189 GLSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 189 ~~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
.+.++.++|.+|+||||.|..+..
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~ 121 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAY 121 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHH
Confidence 368999999999999998655543
No 290
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=94.81 E-value=0.059 Score=54.30 Aligned_cols=81 Identities=15% Similarity=0.204 Sum_probs=45.6
Q ss_pred cEEEEEEecCCCchHHHHHHhhcCccccccccchHHH------HHHHHHHhCCCCCCC-------ccCCCCHHH-----H
Q 040913 190 LSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWI------LDDIIRSLMPPSRVT-------VIIGEDYKL-----K 251 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~~~~~~~~F~~~~wv------~~~il~~l~~~~~~~-------~~~~~~~~~-----l 251 (425)
-..++|+|..|+|||||.+.+.+...... ...+++ ..+.+.+........ ..+...... .
T Consensus 155 GqrigI~G~sG~GKSTLL~~I~~~~~~d~--~vi~~iGeRgrEv~efl~~~~~~~~~~rtv~vv~tsd~p~~~r~~a~~~ 232 (433)
T PRK07594 155 GQRVGIFSAPGVGKSTLLAMLCNAPDADS--NVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFV 232 (433)
T ss_pred CCEEEEECCCCCCccHHHHHhcCCCCCCE--EEEEEECCCchHHHHHHHHhhccCCcceEEEEEECCCCCHHHHHHHHHH
Confidence 45789999999999999999987432211 111122 445555543321111 011111111 1
Q ss_pred HHHHHHHh--cCCeEEEEecccC
Q 040913 252 KSILRDFL--TNKKYFIALDDVC 272 (425)
Q Consensus 252 ~~~l~~~l--~~kr~LlVLDdvw 272 (425)
.-.+.+++ +|+++||++||+-
T Consensus 233 a~tiAEyfrd~G~~VLl~~Dslt 255 (433)
T PRK07594 233 ATTIAEFFRDNGKRVVLLADSLT 255 (433)
T ss_pred HHHHHHHHHHCCCcEEEEEeCHH
Confidence 22344454 4799999999994
No 291
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=94.80 E-value=0.064 Score=46.83 Aligned_cols=21 Identities=10% Similarity=0.162 Sum_probs=18.5
Q ss_pred EEEEEecCCCchHHHHHHhhc
Q 040913 192 VVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 192 vi~IvG~gGvGKTtLa~~v~~ 212 (425)
-|..+||.|+||||+.+++.+
T Consensus 4 ~IvLiG~mGaGKSTIGr~LAk 24 (172)
T COG0703 4 NIVLIGFMGAGKSTIGRALAK 24 (172)
T ss_pred cEEEEcCCCCCHhHHHHHHHH
Confidence 467899999999999999875
No 292
>PRK03846 adenylylsulfate kinase; Provisional
Probab=94.79 E-value=0.025 Score=50.93 Aligned_cols=24 Identities=21% Similarity=0.055 Sum_probs=22.1
Q ss_pred CcEEEEEEecCCCchHHHHHHhhc
Q 040913 189 GLSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 189 ~~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
+..+|.|+|++|+||||||+.+..
T Consensus 23 ~~~~i~i~G~~GsGKSTla~~l~~ 46 (198)
T PRK03846 23 KGVVLWFTGLSGSGKSTVAGALEE 46 (198)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999999877
No 293
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=94.78 E-value=0.019 Score=49.03 Aligned_cols=22 Identities=14% Similarity=0.309 Sum_probs=19.4
Q ss_pred EEEEEecCCCchHHHHHHhhcC
Q 040913 192 VVAILDSSGFDKTAFAADTYNN 213 (425)
Q Consensus 192 vi~IvG~gGvGKTtLa~~v~~~ 213 (425)
+|.+.|++|+||||+|+.+.+.
T Consensus 1 li~l~G~~GsGKST~a~~l~~~ 22 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAER 22 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhh
Confidence 3678999999999999998874
No 294
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=94.77 E-value=0.071 Score=52.39 Aligned_cols=23 Identities=13% Similarity=0.151 Sum_probs=20.7
Q ss_pred cEEEEEEecCCCchHHHHHHhhc
Q 040913 190 LSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
-.+++|+|+.|.|||||.+.+..
T Consensus 31 Gei~gIiG~sGaGKSTLlr~I~g 53 (343)
T TIGR02314 31 GQIYGVIGASGAGKSTLIRCVNL 53 (343)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 46899999999999999999875
No 295
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=94.75 E-value=0.1 Score=50.47 Aligned_cols=23 Identities=17% Similarity=0.109 Sum_probs=20.8
Q ss_pred cEEEEEEecCCCchHHHHHHhhc
Q 040913 190 LSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
-.+++|+|+.|.|||||.+.+..
T Consensus 33 Gei~gllGpNGaGKSTLl~~l~G 55 (306)
T PRK13537 33 GECFGLLGPNGAGKTTTLRMLLG 55 (306)
T ss_pred CcEEEEECCCCCCHHHHHHHHhc
Confidence 45899999999999999999875
No 296
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=94.74 E-value=0.026 Score=50.37 Aligned_cols=22 Identities=23% Similarity=0.362 Sum_probs=18.7
Q ss_pred EEEEEEecCCCchHHHHHHhhc
Q 040913 191 SVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 191 ~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
+.|-+.|.+|+||||+|+++..
T Consensus 2 pLiIlTGyPgsGKTtfakeLak 23 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAK 23 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHH
Confidence 3566789999999999998876
No 297
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=94.73 E-value=0.024 Score=50.49 Aligned_cols=23 Identities=17% Similarity=0.273 Sum_probs=20.4
Q ss_pred EEEEEEecCCCchHHHHHHhhcC
Q 040913 191 SVVAILDSSGFDKTAFAADTYNN 213 (425)
Q Consensus 191 ~vi~IvG~gGvGKTtLa~~v~~~ 213 (425)
.++.|+|+.|+|||||++.+...
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~ 25 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQR 25 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhcc
Confidence 36889999999999999999774
No 298
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=94.72 E-value=0.04 Score=54.98 Aligned_cols=46 Identities=15% Similarity=0.089 Sum_probs=36.4
Q ss_pred CCcccchhhHHHHHHHHhcC------------CCCcEEEEEEecCCCchHHHHHHhhc
Q 040913 167 LDISEFERAREEWFDLLIEG------------PIGLSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 167 ~~~vGr~~~~~~l~~~L~~~------------~~~~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
..++|.+..+..+..++... +...+-|.++|++|+||||||+.+..
T Consensus 15 ~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk 72 (443)
T PRK05201 15 KYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAK 72 (443)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHH
Confidence 45899999999988777541 11246789999999999999998876
No 299
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=94.71 E-value=0.11 Score=49.30 Aligned_cols=23 Identities=17% Similarity=0.216 Sum_probs=20.7
Q ss_pred cEEEEEEecCCCchHHHHHHhhc
Q 040913 190 LSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
-.+++|+|..|.|||||.+.+..
T Consensus 30 Ge~~~IvG~nGsGKSTLl~~L~g 52 (275)
T cd03289 30 GQRVGLLGRTGSGKSTLLSAFLR 52 (275)
T ss_pred CCEEEEECCCCCCHHHHHHHHhh
Confidence 45899999999999999999875
No 300
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=94.70 E-value=0.067 Score=48.16 Aligned_cols=26 Identities=15% Similarity=0.279 Sum_probs=22.5
Q ss_pred CcEEEEEEecCCCchHHHHHHhhcCc
Q 040913 189 GLSVVAILDSSGFDKTAFAADTYNNN 214 (425)
Q Consensus 189 ~~~vi~IvG~gGvGKTtLa~~v~~~~ 214 (425)
....|+|+|.+|+|||||...+.+..
T Consensus 40 ~~~~I~iiG~~g~GKStLl~~l~~~~ 65 (204)
T cd01878 40 GIPTVALVGYTNAGKSTLFNALTGAD 65 (204)
T ss_pred CCCeEEEECCCCCCHHHHHHHHhcch
Confidence 35689999999999999999988753
No 301
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=94.68 E-value=0.039 Score=55.05 Aligned_cols=46 Identities=15% Similarity=0.101 Sum_probs=35.6
Q ss_pred CCcccchhhHHHHHHHHhcC------------CCCcEEEEEEecCCCchHHHHHHhhc
Q 040913 167 LDISEFERAREEWFDLLIEG------------PIGLSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 167 ~~~vGr~~~~~~l~~~L~~~------------~~~~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
..++|.++.+..+.-.+... +...+-|.++|++|+|||++|+.+..
T Consensus 12 ~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~ 69 (441)
T TIGR00390 12 KYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAK 69 (441)
T ss_pred hhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHH
Confidence 45889999988886666532 11346788999999999999998876
No 302
>PRK13949 shikimate kinase; Provisional
Probab=94.67 E-value=0.023 Score=49.82 Aligned_cols=21 Identities=14% Similarity=0.153 Sum_probs=19.4
Q ss_pred EEEEEecCCCchHHHHHHhhc
Q 040913 192 VVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 192 vi~IvG~gGvGKTtLa~~v~~ 212 (425)
-|.|+|++|+||||+++.+.+
T Consensus 3 ~I~liG~~GsGKstl~~~La~ 23 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALAR 23 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 488999999999999999887
No 303
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=94.65 E-value=0.14 Score=53.33 Aligned_cols=127 Identities=19% Similarity=0.190 Sum_probs=70.1
Q ss_pred hHHHHHHHHhcCCCCcEEEEEEecCCCchHH-HHHHhhcCcccccc-c----cc---hHHHHHHHHHHhCCCCCCC----
Q 040913 175 AREEWFDLLIEGPIGLSVVAILDSSGFDKTA-FAADTYNNNHVKFY-F----DC---LAWILDDIIRSLMPPSRVT---- 241 (425)
Q Consensus 175 ~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTt-La~~v~~~~~~~~~-F----~~---~~wv~~~il~~l~~~~~~~---- 241 (425)
-.++|++.+.. -.||.|||..|+|||| |+|.+|.+---... - +- .+-|.+.+...+....+..
T Consensus 360 ~R~~ll~~ir~----n~vvvivgETGSGKTTQl~QyL~edGY~~~GmIGcTQPRRvAAiSVAkrVa~EM~~~lG~~VGYs 435 (1042)
T KOG0924|consen 360 CRDQLLSVIRE----NQVVVIVGETGSGKTTQLAQYLYEDGYADNGMIGCTQPRRVAAISVAKRVAEEMGVTLGDTVGYS 435 (1042)
T ss_pred HHHHHHHHHhh----CcEEEEEecCCCCchhhhHHHHHhcccccCCeeeecCchHHHHHHHHHHHHHHhCCccccccceE
Confidence 34566666655 4589999999999999 89988875321111 1 11 1223566666665544431
Q ss_pred ----cc-------CCC-CHHHHHHHHHHHhcCCeEEEEecccCC---Chhh-HHHHHhhCCCCCCCcEEEEecCChhHHH
Q 040913 242 ----VI-------IGE-DYKLKKSILRDFLTNKKYFIALDDVCH---NIEI-WDDLEEVLPDNQNGSRVLITVINPSLLT 305 (425)
Q Consensus 242 ----~~-------~~~-~~~~l~~~l~~~l~~kr~LlVLDdvw~---~~~~-~~~l~~~l~~~~~gskIivTTR~~~va~ 305 (425)
+. .-+ +.--+.+.|.+..-+|=-.||+|..-. +.+. +..++..+.. ...-|+||||-.-+...
T Consensus 436 IRFEdvT~~~T~IkymTDGiLLrEsL~d~~L~kYSviImDEAHERslNtDilfGllk~~lar-RrdlKliVtSATm~a~k 514 (1042)
T KOG0924|consen 436 IRFEDVTSEDTKIKYMTDGILLRESLKDRDLDKYSVIIMDEAHERSLNTDILFGLLKKVLAR-RRDLKLIVTSATMDAQK 514 (1042)
T ss_pred EEeeecCCCceeEEEeccchHHHHHhhhhhhhheeEEEechhhhcccchHHHHHHHHHHHHh-hccceEEEeeccccHHH
Confidence 00 111 112233333333334556899998852 1222 2333334332 33689999998776655
Q ss_pred H
Q 040913 306 S 306 (425)
Q Consensus 306 ~ 306 (425)
.
T Consensus 515 f 515 (1042)
T KOG0924|consen 515 F 515 (1042)
T ss_pred H
Confidence 4
No 304
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=94.64 E-value=0.086 Score=55.57 Aligned_cols=24 Identities=21% Similarity=0.145 Sum_probs=20.6
Q ss_pred CcEEEEEEecCCCchHHHHHHhhc
Q 040913 189 GLSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 189 ~~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
.-..++|+|..|.|||||++.+..
T Consensus 357 ~G~~v~IvG~sGsGKSTLl~lL~g 380 (571)
T TIGR02203 357 PGETVALVGRSGSGKSTLVNLIPR 380 (571)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh
Confidence 356789999999999999998754
No 305
>PRK08149 ATP synthase SpaL; Validated
Probab=94.63 E-value=0.05 Score=54.68 Aligned_cols=25 Identities=20% Similarity=0.223 Sum_probs=21.8
Q ss_pred cEEEEEEecCCCchHHHHHHhhcCc
Q 040913 190 LSVVAILDSSGFDKTAFAADTYNNN 214 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~~~ 214 (425)
-..++|+|..|+|||||.+.+.+..
T Consensus 151 Gq~i~I~G~sG~GKTTLl~~i~~~~ 175 (428)
T PRK08149 151 GQRMGIFASAGCGKTSLMNMLIEHS 175 (428)
T ss_pred CCEEEEECCCCCChhHHHHHHhcCC
Confidence 4578999999999999999998744
No 306
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=94.63 E-value=0.066 Score=57.32 Aligned_cols=48 Identities=10% Similarity=0.007 Sum_probs=37.2
Q ss_pred CCCcccchhhHHHHHHHHhcCCCCcEEEEEEecCCCchHHHHHHhhcC
Q 040913 166 RLDISEFERAREEWFDLLIEGPIGLSVVAILDSSGFDKTAFAADTYNN 213 (425)
Q Consensus 166 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLa~~v~~~ 213 (425)
-+.++|....+.++.+.+..-.....-|-|.|..|+||+++|+.+++.
T Consensus 324 ~~~l~g~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~~A~~ih~~ 371 (638)
T PRK11388 324 FDHMPQDSPQMRRLIHFGRQAAKSSFPVLLCGEEGVGKALLAQAIHNE 371 (638)
T ss_pred ccceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCcCHHHHHHHHHHh
Confidence 346889888888888777653222334679999999999999999884
No 307
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=94.62 E-value=0.093 Score=56.39 Aligned_cols=23 Identities=26% Similarity=0.183 Sum_probs=20.5
Q ss_pred cEEEEEEecCCCchHHHHHHhhc
Q 040913 190 LSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
-..|+|+|..|+|||||++.+..
T Consensus 499 Ge~vaIvG~SGsGKSTL~KLL~g 521 (709)
T COG2274 499 GEKVAIVGRSGSGKSTLLKLLLG 521 (709)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 45799999999999999999864
No 308
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=94.62 E-value=0.024 Score=49.92 Aligned_cols=23 Identities=13% Similarity=0.145 Sum_probs=20.7
Q ss_pred EEEEEEecCCCchHHHHHHhhcC
Q 040913 191 SVVAILDSSGFDKTAFAADTYNN 213 (425)
Q Consensus 191 ~vi~IvG~gGvGKTtLa~~v~~~ 213 (425)
++|.+.|++|+||||+|+.+...
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~ 25 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSV 25 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 57899999999999999998873
No 309
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=94.61 E-value=0.084 Score=55.84 Aligned_cols=23 Identities=26% Similarity=0.199 Sum_probs=20.5
Q ss_pred cEEEEEEecCCCchHHHHHHhhc
Q 040913 190 LSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
-..++|+|..|.|||||++.+..
T Consensus 369 G~~~aIvG~sGsGKSTLl~ll~g 391 (582)
T PRK11176 369 GKTVALVGRSGSGKSTIANLLTR 391 (582)
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 45799999999999999999875
No 310
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=94.61 E-value=0.026 Score=47.51 Aligned_cols=20 Identities=25% Similarity=0.355 Sum_probs=18.2
Q ss_pred EEEEecCCCchHHHHHHhhc
Q 040913 193 VAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 193 i~IvG~gGvGKTtLa~~v~~ 212 (425)
|-++|.+|+|||+||+.+..
T Consensus 2 vlL~G~~G~GKt~l~~~la~ 21 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAA 21 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999887
No 311
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=94.61 E-value=0.072 Score=53.54 Aligned_cols=81 Identities=11% Similarity=0.197 Sum_probs=45.2
Q ss_pred cEEEEEEecCCCchHHHHHHhhcCccccccccchHHH------HHHHHHHhCCCCCCC-------ccCCCCHH-----HH
Q 040913 190 LSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWI------LDDIIRSLMPPSRVT-------VIIGEDYK-----LK 251 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~~~~~~~~F~~~~wv------~~~il~~l~~~~~~~-------~~~~~~~~-----~l 251 (425)
-..++|+|..|+|||||.+.+....+. .....+++ ..+++.......... ..+..... ..
T Consensus 140 Gq~i~I~G~sG~GKTtLl~~I~~~~~~--~~gvi~~iGer~~ev~~~~~~~l~~~~~~~tvvv~atsd~~~~~r~~a~~~ 217 (418)
T TIGR03498 140 GQRLGIFAGSGVGKSTLLSMLARNTDA--DVVVIALVGERGREVREFLEDDLGEEGLKRSVVVVATSDESPLMRRQAAYT 217 (418)
T ss_pred CcEEEEECCCCCChHHHHHHHhCCCCC--CEEEEEEEeeechHHHHHHHHhhhccccceeEEEEECCCCCHHHHHHHHHH
Confidence 457899999999999999998874321 11111222 445554332221111 01111111 12
Q ss_pred HHHHHHHh--cCCeEEEEecccC
Q 040913 252 KSILRDFL--TNKKYFIALDDVC 272 (425)
Q Consensus 252 ~~~l~~~l--~~kr~LlVLDdvw 272 (425)
.-.+.+++ +++++||++||+-
T Consensus 218 a~~iAEyfrd~G~~Vll~~DslT 240 (418)
T TIGR03498 218 ATAIAEYFRDQGKDVLLLMDSVT 240 (418)
T ss_pred HHHHHHHHHHcCCCEEEeccchh
Confidence 23345555 5799999999994
No 312
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=94.60 E-value=0.027 Score=51.66 Aligned_cols=23 Identities=22% Similarity=0.180 Sum_probs=20.4
Q ss_pred cEEEEEEecCCCchHHHHHHhhc
Q 040913 190 LSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
-.+++|+|..|+|||||++.+.-
T Consensus 33 Ge~lgivGeSGsGKSTL~r~l~G 55 (252)
T COG1124 33 GETLGIVGESGSGKSTLARLLAG 55 (252)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhc
Confidence 46899999999999999998863
No 313
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.59 E-value=0.083 Score=56.72 Aligned_cols=23 Identities=26% Similarity=0.303 Sum_probs=19.7
Q ss_pred cEEEEEEecCCCchHHHHHHhhc
Q 040913 190 LSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
..||.++|+.|+||||.+..+..
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~ 207 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAA 207 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHh
Confidence 57999999999999998776654
No 314
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=94.59 E-value=0.051 Score=55.05 Aligned_cols=81 Identities=11% Similarity=0.224 Sum_probs=46.6
Q ss_pred EEEEEEecCCCchHHHHHHhhcCccccccccchHHH--------HHHHHHHhCCCCCCC------ccCCC-CH-----HH
Q 040913 191 SVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWI--------LDDIIRSLMPPSRVT------VIIGE-DY-----KL 250 (425)
Q Consensus 191 ~vi~IvG~gGvGKTtLa~~v~~~~~~~~~F~~~~wv--------~~~il~~l~~~~~~~------~~~~~-~~-----~~ 250 (425)
.-++|.|.+|+|||||+.++..+...... +.++++ ..+++..+....... ...+. .. ..
T Consensus 145 QR~gIfa~~GvGKt~Ll~~i~~~~~~~~~-~v~V~~liGER~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~~a~~ 223 (463)
T PRK09280 145 GKIGLFGGAGVGKTVLIQELINNIAKEHG-GYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARLRVAL 223 (463)
T ss_pred CEEEeecCCCCChhHHHHHHHHHHHhcCC-CEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHHH
Confidence 45899999999999999887553221110 122333 556666655432211 00111 11 12
Q ss_pred HHHHHHHHh---cCCeEEEEecccC
Q 040913 251 KKSILRDFL---TNKKYFIALDDVC 272 (425)
Q Consensus 251 l~~~l~~~l---~~kr~LlVLDdvw 272 (425)
..-.+.+++ ++|++||++||+-
T Consensus 224 ~a~tiAEyfrd~~G~~VLll~DslT 248 (463)
T PRK09280 224 TGLTMAEYFRDVEGQDVLLFIDNIF 248 (463)
T ss_pred HHHHHHHHHHHhcCCceEEEecchH
Confidence 233456666 6799999999994
No 315
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=94.59 E-value=0.0099 Score=56.35 Aligned_cols=129 Identities=18% Similarity=0.151 Sum_probs=67.5
Q ss_pred CcccchhhHHHHHHHHhcCCCCcEEEEEEecCCCchHHHHHHhhcCccccccccchHHHHHHHHHHhCCCCCCCccCC-C
Q 040913 168 DISEFERAREEWFDLLIEGPIGLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWILDDIIRSLMPPSRVTVIIG-E 246 (425)
Q Consensus 168 ~~vGr~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~~il~~l~~~~~~~~~~~-~ 246 (425)
++.-.....+.+.+.|...-...+.|.|.|..|+||||++..+.. .+... +.++.++++-..-............ .
T Consensus 105 ~l~~~~~~~~~~~~~l~~~v~~~~~ili~G~tGSGKTT~l~all~--~i~~~-~~~iv~iEd~~E~~l~~~~~~~~~~~~ 181 (270)
T PF00437_consen 105 DLGESGSIPEEIAEFLRSAVRGRGNILISGPTGSGKTTLLNALLE--EIPPE-DERIVTIEDPPELRLPGPNQIQIQTRR 181 (270)
T ss_dssp CCCHTHHCHHHHHHHHHHCHHTTEEEEEEESTTSSHHHHHHHHHH--HCHTT-TSEEEEEESSS-S--SCSSEEEEEEET
T ss_pred hccCchhhHHHHHHHHhhccccceEEEEECCCccccchHHHHHhh--hcccc-ccceEEeccccceeecccceEEEEeec
Confidence 333333444556666655422367899999999999999988776 22222 1111110000000000000001111 2
Q ss_pred CHHHHHHHHHHHhcCCeEEEEecccCCChhhHHHHHhhCCCCCCCcEE-EEecCChhHH
Q 040913 247 DYKLKKSILRDFLTNKKYFIALDDVCHNIEIWDDLEEVLPDNQNGSRV-LITVINPSLL 304 (425)
Q Consensus 247 ~~~~l~~~l~~~l~~kr~LlVLDdvw~~~~~~~~l~~~l~~~~~gskI-ivTTR~~~va 304 (425)
+.....+.+...|+...=.|+++.+. +.+.+..+... ..|..+ +-|....++.
T Consensus 182 ~~~~~~~~l~~~LR~~pD~iiigEiR-~~e~~~~~~a~----~tGh~~~~tT~Ha~s~~ 235 (270)
T PF00437_consen 182 DEISYEDLLKSALRQDPDVIIIGEIR-DPEAAEAIQAA----NTGHLGSLTTLHANSAE 235 (270)
T ss_dssp TTBSHHHHHHHHTTS--SEEEESCE--SCHHHHHHHHH----HTT-EEEEEEEE-SSHH
T ss_pred CcccHHHHHHHHhcCCCCcccccccC-CHhHHHHHHhh----ccCCceeeeeeecCCHH
Confidence 33455666778888888889999999 87777665444 347777 6666655554
No 316
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=94.58 E-value=0.033 Score=48.06 Aligned_cols=23 Identities=26% Similarity=0.109 Sum_probs=20.5
Q ss_pred cEEEEEEecCCCchHHHHHHhhc
Q 040913 190 LSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
..||-|.|.+|+||||||+.+..
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~ 24 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALER 24 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 46888999999999999999987
No 317
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=94.58 E-value=0.038 Score=56.12 Aligned_cols=81 Identities=10% Similarity=0.151 Sum_probs=48.8
Q ss_pred cEEEEEEecCCCchHHHHHHhhcCccccccccchHHH--------HHHHHHHhCCCCCCC------ccCCCC------HH
Q 040913 190 LSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWI--------LDDIIRSLMPPSRVT------VIIGED------YK 249 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~~~~~~~~F~~~~wv--------~~~il~~l~~~~~~~------~~~~~~------~~ 249 (425)
-.-++|.|.+|+|||||+.++.++... .+-+.++++ ..+++..+....... ...+.. ..
T Consensus 143 GQR~gIfa~~G~GKt~Ll~~~~~~~~~-~~~dv~V~~liGER~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~~a~ 221 (461)
T PRK12597 143 GGKTGLFGGAGVGKTVLMMELIFNISK-QHSGSSVFAGVGERSREGHELYHEMKESGVLDKTVMVYGQMNEPPGARMRVV 221 (461)
T ss_pred CCEEEeecCCCCChhHHHHHHHHHHHh-hCCCEEEEEcCCcchHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHHHHH
Confidence 346899999999999999887764322 234555555 555666654432211 011111 12
Q ss_pred HHHHHHHHHh---cCCeEEEEeccc
Q 040913 250 LKKSILRDFL---TNKKYFIALDDV 271 (425)
Q Consensus 250 ~l~~~l~~~l---~~kr~LlVLDdv 271 (425)
...-.+.+++ +++++|+++||+
T Consensus 222 ~~a~tiAEyfrd~~G~~VLl~~Dsl 246 (461)
T PRK12597 222 LTGLTIAEYLRDEEKEDVLLFIDNI 246 (461)
T ss_pred HHHHHHHHHHHHhcCCceEEEeccc
Confidence 2334455565 389999999999
No 318
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=94.58 E-value=0.022 Score=53.55 Aligned_cols=84 Identities=21% Similarity=0.202 Sum_probs=45.5
Q ss_pred CcEEEEEEecCCCchHHHHHHhhcCcccccc---c-cchHHH----------HHHHHHHhCCCCCCC-----ccCCCCHH
Q 040913 189 GLSVVAILDSSGFDKTAFAADTYNNNHVKFY---F-DCLAWI----------LDDIIRSLMPPSRVT-----VIIGEDYK 249 (425)
Q Consensus 189 ~~~vi~IvG~gGvGKTtLa~~v~~~~~~~~~---F-~~~~wv----------~~~il~~l~~~~~~~-----~~~~~~~~ 249 (425)
.-.+.=|+|.+|+|||.|+.++.-+..+... . ...+|+ +.+|+.......... -....+.+
T Consensus 37 ~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~~i~~~~~~~~~~~l~~I~v~~~~~~~ 116 (256)
T PF08423_consen 37 TGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQQIAERFGLDPEEILDNIFVIRVFDLE 116 (256)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHHHHHHHTTS-HHHHHHTEEEEE-SSHH
T ss_pred CCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHHHHhhccccccchhhhceeeeecCCHH
Confidence 4568889999999999999776542222111 1 224455 556665443211100 01122344
Q ss_pred HHHHH---HHHHh-cCCeEEEEecccC
Q 040913 250 LKKSI---LRDFL-TNKKYFIALDDVC 272 (425)
Q Consensus 250 ~l~~~---l~~~l-~~kr~LlVLDdvw 272 (425)
++... +...+ ..+--|||+|.+-
T Consensus 117 ~l~~~L~~l~~~l~~~~ikLIVIDSIa 143 (256)
T PF08423_consen 117 ELLELLEQLPKLLSESKIKLIVIDSIA 143 (256)
T ss_dssp HHHHHHHHHHHHHHHSCEEEEEEETSS
T ss_pred HHHHHHHHHHhhccccceEEEEecchH
Confidence 44333 33334 3456699999984
No 319
>PRK00279 adk adenylate kinase; Reviewed
Probab=94.57 E-value=0.16 Score=46.32 Aligned_cols=21 Identities=19% Similarity=0.110 Sum_probs=18.8
Q ss_pred EEEEEecCCCchHHHHHHhhc
Q 040913 192 VVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 192 vi~IvG~gGvGKTtLa~~v~~ 212 (425)
.|.|.|++|+||||+|+.+..
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~ 22 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAE 22 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 378899999999999998876
No 320
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=94.54 E-value=1.3 Score=42.11 Aligned_cols=109 Identities=15% Similarity=0.078 Sum_probs=63.4
Q ss_pred CcccchhhHHHHHHHHhcC-----CCCcEEEEEEecCCCchHHHHHHhhcCccccc-cccchHHHHHHHHHHhCCCCCCC
Q 040913 168 DISEFERAREEWFDLLIEG-----PIGLSVVAILDSSGFDKTAFAADTYNNNHVKF-YFDCLAWILDDIIRSLMPPSRVT 241 (425)
Q Consensus 168 ~~vGr~~~~~~l~~~L~~~-----~~~~~vi~IvG~gGvGKTtLa~~v~~~~~~~~-~F~~~~wv~~~il~~l~~~~~~~ 241 (425)
.++|..-.++.|+..+..- ..++-|++.+|..|+||.-.++.+.++-.-.. +=+ +| ........
T Consensus 83 ~lfGQHla~~~Vv~alk~~~~n~~p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~---~V-~~fvat~h------ 152 (344)
T KOG2170|consen 83 ALFGQHLAKQLVVNALKSHWANPNPRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRSP---FV-HHFVATLH------ 152 (344)
T ss_pred HhhchHHHHHHHHHHHHHHhcCCCCCCCeEEEecCCCCCchhHHHHHHHHHHHhccccch---hH-HHhhhhcc------
Confidence 4677777777787777642 35788999999999999999988877421111 000 00 00000000
Q ss_pred ccCCCCH----HHHHHHHHHHhc-CCeEEEEecccCC-ChhhHHHHHhhCC
Q 040913 242 VIIGEDY----KLKKSILRDFLT-NKKYFIALDDVCH-NIEIWDDLEEVLP 286 (425)
Q Consensus 242 ~~~~~~~----~~l~~~l~~~l~-~kr~LlVLDdvw~-~~~~~~~l~~~l~ 286 (425)
-+..... +++...++..++ -+|-|+|+|++.- ...-.+.|++.|.
T Consensus 153 FP~~~~ie~Yk~eL~~~v~~~v~~C~rslFIFDE~DKmp~gLld~lkpfLd 203 (344)
T KOG2170|consen 153 FPHASKIEDYKEELKNRVRGTVQACQRSLFIFDEVDKLPPGLLDVLKPFLD 203 (344)
T ss_pred CCChHHHHHHHHHHHHHHHHHHHhcCCceEEechhhhcCHhHHHHHhhhhc
Confidence 0111223 344444444443 3899999999962 1245566666554
No 321
>PRK14530 adenylate kinase; Provisional
Probab=94.50 E-value=0.026 Score=51.57 Aligned_cols=21 Identities=14% Similarity=0.234 Sum_probs=19.3
Q ss_pred EEEEEecCCCchHHHHHHhhc
Q 040913 192 VVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 192 vi~IvG~gGvGKTtLa~~v~~ 212 (425)
.|.|+|++|+||||+|+.+..
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~ 25 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAE 25 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999876
No 322
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=94.49 E-value=0.065 Score=49.26 Aligned_cols=111 Identities=11% Similarity=0.061 Sum_probs=56.1
Q ss_pred CcEEEEEEecCCCchHHHHHHhhcCccccccccchHHH---------HHHHHHHhCCCCCCCccCCCCHHHHHHHHHHHh
Q 040913 189 GLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWI---------LDDIIRSLMPPSRVTVIIGEDYKLKKSILRDFL 259 (425)
Q Consensus 189 ~~~vi~IvG~gGvGKTtLa~~v~~~~~~~~~F~~~~wv---------~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~l 259 (425)
...++.|.|+.|.||||+.+.+.... + .+....+| .+.|+..+...... .........-...+...+
T Consensus 29 ~~~~~~l~G~n~~GKstll~~i~~~~-~--la~~g~~vpa~~~~~~~~~~il~~~~l~d~~-~~~lS~~~~e~~~~a~il 104 (222)
T cd03285 29 KSRFLIITGPNMGGKSTYIRQIGVIV-L--MAQIGCFVPCDSADIPIVDCILARVGASDSQ-LKGVSTFMAEMLETAAIL 104 (222)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHH-H--HHHhCCCcCcccEEEeccceeEeeeccccch-hcCcChHHHHHHHHHHHH
Confidence 36789999999999999988765310 0 00111111 23333333222111 001112222222333334
Q ss_pred --cCCeEEEEecccCC--Chh-----hHHHHHhhCCCCCCCcEEEEecCChhHHH
Q 040913 260 --TNKKYFIALDDVCH--NIE-----IWDDLEEVLPDNQNGSRVLITVINPSLLT 305 (425)
Q Consensus 260 --~~kr~LlVLDdvw~--~~~-----~~~~l~~~l~~~~~gskIivTTR~~~va~ 305 (425)
-..+-|++||..-. +.. .|..+ ..+.. ..|+.+|+||....+..
T Consensus 105 ~~~~~~sLvLLDEp~~gT~~lD~~~~~~~il-~~l~~-~~~~~vlisTH~~el~~ 157 (222)
T cd03285 105 KSATENSLIIIDELGRGTSTYDGFGLAWAIA-EYIAT-QIKCFCLFATHFHELTA 157 (222)
T ss_pred HhCCCCeEEEEecCcCCCChHHHHHHHHHHH-HHHHh-cCCCeEEEEechHHHHH
Confidence 35788999999931 221 22222 22222 24788999998766553
No 323
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=94.46 E-value=0.028 Score=50.48 Aligned_cols=25 Identities=20% Similarity=0.153 Sum_probs=22.2
Q ss_pred cEEEEEEecCCCchHHHHHHhhcCc
Q 040913 190 LSVVAILDSSGFDKTAFAADTYNNN 214 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~~~ 214 (425)
..+|+|-||=|+||||||+.+.++-
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l 28 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHL 28 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHh
Confidence 5689999999999999999998843
No 324
>PRK14528 adenylate kinase; Provisional
Probab=94.45 E-value=0.27 Score=43.81 Aligned_cols=23 Identities=13% Similarity=0.104 Sum_probs=19.9
Q ss_pred EEEEEEecCCCchHHHHHHhhcC
Q 040913 191 SVVAILDSSGFDKTAFAADTYNN 213 (425)
Q Consensus 191 ~vi~IvG~gGvGKTtLa~~v~~~ 213 (425)
+.|.|.|++|+||||+|+.+...
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~ 24 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCER 24 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 45789999999999999998763
No 325
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=94.44 E-value=0.29 Score=47.46 Aligned_cols=45 Identities=9% Similarity=-0.076 Sum_probs=37.0
Q ss_pred CCcccchhhHHHHHHHHhcCCCCcEEEEEEecCCCchHHHHHHhhc
Q 040913 167 LDISEFERAREEWFDLLIEGPIGLSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 167 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
.+++|.+..++.+.+.+..+. -.+..-++|+.|+||+++|..+.+
T Consensus 4 ~~iiGq~~~~~~L~~~i~~~r-l~ha~Lf~G~~G~Gk~~~A~~~a~ 48 (314)
T PRK07399 4 ANLIGQPLAIELLTAAIKQNR-IAPAYLFAGPEGVGRKLAALCFIE 48 (314)
T ss_pred HHhCCHHHHHHHHHHHHHhCC-CCceEEEECCCCCCHHHHHHHHHH
Confidence 468899999999999988764 347888999999999998876654
No 326
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=94.43 E-value=0.036 Score=46.42 Aligned_cols=24 Identities=21% Similarity=0.212 Sum_probs=21.1
Q ss_pred cEEEEEEecCCCchHHHHHHhhcC
Q 040913 190 LSVVAILDSSGFDKTAFAADTYNN 213 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~~ 213 (425)
-.+++|+|..|+|||||.+.+...
T Consensus 11 g~~~~i~G~nGsGKStLl~~l~g~ 34 (137)
T PF00005_consen 11 GEIVAIVGPNGSGKSTLLKALAGL 34 (137)
T ss_dssp TSEEEEEESTTSSHHHHHHHHTTS
T ss_pred CCEEEEEccCCCccccceeeeccc
Confidence 357899999999999999998873
No 327
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=94.43 E-value=0.11 Score=56.08 Aligned_cols=24 Identities=17% Similarity=0.137 Sum_probs=21.0
Q ss_pred cEEEEEEecCCCchHHHHHHhhcC
Q 040913 190 LSVVAILDSSGFDKTAFAADTYNN 213 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~~ 213 (425)
-..++|+|..|.|||||++.+...
T Consensus 483 G~~vaivG~sGsGKSTL~~ll~g~ 506 (694)
T TIGR01846 483 GEFIGIVGPSGSGKSTLTKLLQRL 506 (694)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 457899999999999999998753
No 328
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=94.43 E-value=0.037 Score=44.50 Aligned_cols=22 Identities=32% Similarity=0.283 Sum_probs=19.8
Q ss_pred cEEEEEEecCCCchHHHHHHhh
Q 040913 190 LSVVAILDSSGFDKTAFAADTY 211 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~ 211 (425)
-..++|+|+.|+|||||+..+.
T Consensus 15 ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 15 KVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CEEEEEEcCCCCCHHHHHHHhh
Confidence 4678999999999999999976
No 329
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=94.42 E-value=0.097 Score=55.29 Aligned_cols=24 Identities=21% Similarity=0.189 Sum_probs=21.3
Q ss_pred CcEEEEEEecCCCchHHHHHHhhc
Q 040913 189 GLSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 189 ~~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
.-..++|+|..|.|||||++.+..
T Consensus 365 ~G~~~aivG~sGsGKSTL~~ll~g 388 (574)
T PRK11160 365 AGEKVALLGRTGCGKSTLLQLLTR 388 (574)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 356899999999999999999875
No 330
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=94.40 E-value=0.029 Score=47.98 Aligned_cols=20 Identities=15% Similarity=0.170 Sum_probs=18.6
Q ss_pred EEEEecCCCchHHHHHHhhc
Q 040913 193 VAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 193 i~IvG~gGvGKTtLa~~v~~ 212 (425)
|.++|++|+||||+|+.+..
T Consensus 2 i~l~G~~GsGKstla~~la~ 21 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAK 21 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHH
Confidence 67899999999999999986
No 331
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=94.39 E-value=0.035 Score=50.37 Aligned_cols=25 Identities=28% Similarity=0.418 Sum_probs=22.7
Q ss_pred CCcEEEEEEecCCCchHHHHHHhhc
Q 040913 188 IGLSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 188 ~~~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
.++++|+++|..|+|||||..++.+
T Consensus 20 ~~~~~i~~~G~~gsGKTTli~~l~~ 44 (207)
T TIGR00073 20 HGLVVLNFMSSPGSGKTTLIEKLID 44 (207)
T ss_pred cCcEEEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999999988876
No 332
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.38 E-value=0.11 Score=52.76 Aligned_cols=101 Identities=22% Similarity=0.254 Sum_probs=58.2
Q ss_pred CCcEEEEEEecCCCchHHHHHHhhcCccccccccchHHHHHHHHHHhCCCCCCCccCCCCHHHHHHHHHHHh----cCCe
Q 040913 188 IGLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWILDDIIRSLMPPSRVTVIIGEDYKLKKSILRDFL----TNKK 263 (425)
Q Consensus 188 ~~~~vi~IvG~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~l----~~kr 263 (425)
..+..+.+.|++|+|||+||..+... ..|+.+=-+ .+. +....++......+.+.+ +..-
T Consensus 536 s~lvSvLl~Gp~~sGKTaLAA~iA~~----S~FPFvKii---------Spe---~miG~sEsaKc~~i~k~F~DAYkS~l 599 (744)
T KOG0741|consen 536 SPLVSVLLEGPPGSGKTALAAKIALS----SDFPFVKII---------SPE---DMIGLSESAKCAHIKKIFEDAYKSPL 599 (744)
T ss_pred CcceEEEEecCCCCChHHHHHHHHhh----cCCCeEEEe---------ChH---HccCccHHHHHHHHHHHHHHhhcCcc
Confidence 45677778899999999999998772 334421110 110 223344455555555555 4466
Q ss_pred EEEEecccCCChhhH------------HHHHhhCCCC-CCCcE--EEEecCChhHHH
Q 040913 264 YFIALDDVCHNIEIW------------DDLEEVLPDN-QNGSR--VLITVINPSLLT 305 (425)
Q Consensus 264 ~LlVLDdvw~~~~~~------------~~l~~~l~~~-~~gsk--IivTTR~~~va~ 305 (425)
-.||+||+. ..-+| ..+...|... ..|-| |+-||....|.+
T Consensus 600 siivvDdiE-rLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~ 655 (744)
T KOG0741|consen 600 SIIVVDDIE-RLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQ 655 (744)
T ss_pred eEEEEcchh-hhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHH
Confidence 789999996 44444 3333333322 23444 555666666655
No 333
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.38 E-value=0.24 Score=49.35 Aligned_cols=93 Identities=13% Similarity=0.068 Sum_probs=49.9
Q ss_pred CcEEEEEEecCCCchHHHHHHhhcCcc---------c----cccccch-HHHHHHHHHHhCCCCCCCccCCCCHHHHHHH
Q 040913 189 GLSVVAILDSSGFDKTAFAADTYNNNH---------V----KFYFDCL-AWILDDIIRSLMPPSRVTVIIGEDYKLKKSI 254 (425)
Q Consensus 189 ~~~vi~IvG~gGvGKTtLa~~v~~~~~---------~----~~~F~~~-~wv~~~il~~l~~~~~~~~~~~~~~~~l~~~ 254 (425)
..++|.++|+.|+||||.+..+..... + .+.|... .|.++.....+..+.. ...+...+...
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~----~~~~~~~l~~~ 248 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVK----AIESFKDLKEE 248 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceE----eeCcHHHHHHH
Confidence 467999999999999998876654211 1 1223221 2224444444433321 12344555555
Q ss_pred HHHHhcCCeEEEEecccCCCh---hhHHHHHhhCCC
Q 040913 255 LRDFLTNKKYFIALDDVCHNI---EIWDDLEEVLPD 287 (425)
Q Consensus 255 l~~~l~~kr~LlVLDdvw~~~---~~~~~l~~~l~~ 287 (425)
+... .+.=+|++|....+. ..+..+...+..
T Consensus 249 L~~~--~~~DlVLIDTaGr~~~~~~~l~el~~~l~~ 282 (388)
T PRK12723 249 ITQS--KDFDLVLVDTIGKSPKDFMKLAEMKELLNA 282 (388)
T ss_pred HHHh--CCCCEEEEcCCCCCccCHHHHHHHHHHHHh
Confidence 5443 345588889885222 234555555543
No 334
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=94.37 E-value=0.052 Score=52.78 Aligned_cols=47 Identities=13% Similarity=0.112 Sum_probs=41.2
Q ss_pred CCCcccchhhHHHHHHHHhcC----CCCcEEEEEEecCCCchHHHHHHhhc
Q 040913 166 RLDISEFERAREEWFDLLIEG----PIGLSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 166 ~~~~vGr~~~~~~l~~~L~~~----~~~~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
...++|.++.++++++.+... +..-+|+-.+|+.|.||||||..+.+
T Consensus 60 ~~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~ 110 (358)
T PF08298_consen 60 EDEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKR 110 (358)
T ss_pred cccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999998864 34678999999999999999998876
No 335
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=94.37 E-value=0.06 Score=44.45 Aligned_cols=47 Identities=13% Similarity=-0.005 Sum_probs=35.4
Q ss_pred CCcccchhhHHHHHHHHhc----C-CCCcEEEEEEecCCCchHHHHHHhhcC
Q 040913 167 LDISEFERAREEWFDLLIE----G-PIGLSVVAILDSSGFDKTAFAADTYNN 213 (425)
Q Consensus 167 ~~~vGr~~~~~~l~~~L~~----~-~~~~~vi~IvG~gGvGKTtLa~~v~~~ 213 (425)
..++|..-..+.+++.+.. + ..++-|++..|.+|+|||.+++.+.++
T Consensus 25 ~~l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~ 76 (127)
T PF06309_consen 25 RNLFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEH 76 (127)
T ss_pred HHccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHH
Confidence 3477877777777666653 2 456899999999999999988777653
No 336
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=94.37 E-value=0.027 Score=48.72 Aligned_cols=21 Identities=19% Similarity=0.235 Sum_probs=19.3
Q ss_pred EEEEEecCCCchHHHHHHhhc
Q 040913 192 VVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 192 vi~IvG~gGvGKTtLa~~v~~ 212 (425)
|++|+|+.|+|||||+..+..
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~ 21 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVK 21 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999998887
No 337
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=94.36 E-value=0.056 Score=52.65 Aligned_cols=37 Identities=19% Similarity=0.195 Sum_probs=28.3
Q ss_pred HHHHHHHHhcCCCCcEEEEEEecCCCchHHHHHHhhc
Q 040913 176 REEWFDLLIEGPIGLSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 176 ~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
...|++.+........+|+|.|.+|+|||||+..+..
T Consensus 42 ~~~l~~~~~~~~~~~~~igi~G~~GaGKSTl~~~l~~ 78 (332)
T PRK09435 42 AQELLDALLPHTGNALRIGITGVPGVGKSTFIEALGM 78 (332)
T ss_pred HHHHHHHHhhcCCCcEEEEEECCCCCCHHHHHHHHHH
Confidence 3456666654445688999999999999999987654
No 338
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=94.36 E-value=0.26 Score=47.33 Aligned_cols=23 Identities=17% Similarity=0.174 Sum_probs=21.0
Q ss_pred cEEEEEEecCCCchHHHHHHhhc
Q 040913 190 LSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
-.++++.|+.|.|||||.+.+..
T Consensus 31 Gei~gllG~NGAGKTTllk~l~g 53 (293)
T COG1131 31 GEIFGLLGPNGAGKTTLLKILAG 53 (293)
T ss_pred CeEEEEECCCCCCHHHHHHHHhC
Confidence 46899999999999999999876
No 339
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=94.35 E-value=0.38 Score=42.71 Aligned_cols=21 Identities=19% Similarity=0.221 Sum_probs=19.1
Q ss_pred EEEEecCCCchHHHHHHhhcC
Q 040913 193 VAILDSSGFDKTAFAADTYNN 213 (425)
Q Consensus 193 i~IvG~gGvGKTtLa~~v~~~ 213 (425)
|.|.|++|+||||+|+.+...
T Consensus 2 I~i~G~pGsGKst~a~~La~~ 22 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKK 22 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 679999999999999998874
No 340
>PRK13975 thymidylate kinase; Provisional
Probab=94.33 E-value=0.033 Score=49.83 Aligned_cols=23 Identities=17% Similarity=0.063 Sum_probs=21.0
Q ss_pred EEEEEEecCCCchHHHHHHhhcC
Q 040913 191 SVVAILDSSGFDKTAFAADTYNN 213 (425)
Q Consensus 191 ~vi~IvG~gGvGKTtLa~~v~~~ 213 (425)
..|.|.|+.|+||||+++.+.+.
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~ 25 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEK 25 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999999884
No 341
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=94.32 E-value=0.08 Score=54.84 Aligned_cols=95 Identities=18% Similarity=0.148 Sum_probs=58.2
Q ss_pred CCCCcccchhhHHHHHHHHhc---C--------CCCcEEEEEEecCCCchHHHHHHhhcCccccccccchHHHHHHHHHH
Q 040913 165 PRLDISEFERAREEWFDLLIE---G--------PIGLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWILDDIIRS 233 (425)
Q Consensus 165 ~~~~~vGr~~~~~~l~~~L~~---~--------~~~~~vi~IvG~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~~il~~ 233 (425)
.-.++.|.+..++.+.+.+.. . -...+.+-++|++|.|||.||+++.+ ....+|-...+- +++..
T Consensus 240 ~~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~--~~~~~fi~v~~~--~l~sk 315 (494)
T COG0464 240 TLDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVAL--ESRSRFISVKGS--ELLSK 315 (494)
T ss_pred ceehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHh--hCCCeEEEeeCH--HHhcc
Confidence 334556666666665444332 1 13466888999999999999999999 555555321110 11111
Q ss_pred hCCCCCCCccCCCCHHHHHHHHHHHhcCCeEEEEecccC
Q 040913 234 LMPPSRVTVIIGEDYKLKKSILRDFLTNKKYFIALDDVC 272 (425)
Q Consensus 234 l~~~~~~~~~~~~~~~~l~~~l~~~l~~kr~LlVLDdvw 272 (425)
....+...+...+....+...+.|.+|.+.
T Consensus 316 ---------~vGesek~ir~~F~~A~~~~p~iiFiDEiD 345 (494)
T COG0464 316 ---------WVGESEKNIRELFEKARKLAPSIIFIDEID 345 (494)
T ss_pred ---------ccchHHHHHHHHHHHHHcCCCcEEEEEchh
Confidence 112334455555555556789999999995
No 342
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=94.31 E-value=0.026 Score=49.02 Aligned_cols=20 Identities=15% Similarity=0.287 Sum_probs=18.0
Q ss_pred EEEEecCCCchHHHHHHhhc
Q 040913 193 VAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 193 i~IvG~gGvGKTtLa~~v~~ 212 (425)
|.++|++|+||||+|+.+.+
T Consensus 1 i~l~G~~GsGKSTla~~l~~ 20 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAH 20 (163)
T ss_pred CEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999877
No 343
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.31 E-value=0.086 Score=55.23 Aligned_cols=87 Identities=15% Similarity=0.175 Sum_probs=49.1
Q ss_pred CCcccchhhHHHHHHHHhcCCCCcEEEEEEecCCCchHHHHHHhhcCcccccc------ccchHHHHHHHHHHhCCCCCC
Q 040913 167 LDISEFERAREEWFDLLIEGPIGLSVVAILDSSGFDKTAFAADTYNNNHVKFY------FDCLAWILDDIIRSLMPPSRV 240 (425)
Q Consensus 167 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLa~~v~~~~~~~~~------F~~~~wv~~~il~~l~~~~~~ 240 (425)
.+++--...++...+....+--...-|-|.|..|+|||+||+.+++... +++ |+|.
T Consensus 408 ~d~i~~~s~kke~~n~~~spv~~~~~Ill~G~~GsGKT~L~kal~~~~~-k~~~~hv~~v~Cs----------------- 469 (952)
T KOG0735|consen 408 HDFIQVPSYKKENANQELSPVFRHGNILLNGPKGSGKTNLVKALFDYYS-KDLIAHVEIVSCS----------------- 469 (952)
T ss_pred CceeecchhhhhhhhhhcccccccccEEEeCCCCCCHhHHHHHHHHHhc-cccceEEEEEech-----------------
Confidence 3444333333333333333322356688999999999999999998433 221 2221
Q ss_pred CccCCCCHHHHH----HHHHHHhcCCeEEEEecccC
Q 040913 241 TVIIGEDYKLKK----SILRDFLTNKKYFIALDDVC 272 (425)
Q Consensus 241 ~~~~~~~~~~l~----~~l~~~l~~kr~LlVLDdvw 272 (425)
.......+..+ ..+.+++..-.-+|||||+.
T Consensus 470 -~l~~~~~e~iQk~l~~vfse~~~~~PSiIvLDdld 504 (952)
T KOG0735|consen 470 -TLDGSSLEKIQKFLNNVFSEALWYAPSIIVLDDLD 504 (952)
T ss_pred -hccchhHHHHHHHHHHHHHHHHhhCCcEEEEcchh
Confidence 11112233333 33444555688999999995
No 344
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.31 E-value=0.076 Score=52.55 Aligned_cols=23 Identities=26% Similarity=0.293 Sum_probs=20.4
Q ss_pred cEEEEEEecCCCchHHHHHHhhc
Q 040913 190 LSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
-.++.++|+.|+||||++.++..
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~ 159 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAA 159 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999888765
No 345
>PRK05688 fliI flagellum-specific ATP synthase; Validated
Probab=94.29 E-value=0.079 Score=53.57 Aligned_cols=83 Identities=7% Similarity=0.136 Sum_probs=45.5
Q ss_pred cEEEEEEecCCCchHHHHHHhhcCccccccccchHHH----HHHHHHHhCCCCCCC-------ccCCCCH-----HHHHH
Q 040913 190 LSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWI----LDDIIRSLMPPSRVT-------VIIGEDY-----KLKKS 253 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~~~~~~~~F~~~~wv----~~~il~~l~~~~~~~-------~~~~~~~-----~~l~~ 253 (425)
-..++|+|..|+|||||++.+.+.....-.+...+.. ..++...+....... ..+.... ....-
T Consensus 168 GqrigI~G~sG~GKSTLl~~I~g~~~~dv~V~g~Ig~rg~ev~~~~~~~~~~~~l~rsvvv~atsd~~p~~r~~a~~~a~ 247 (451)
T PRK05688 168 GQRLGLFAGTGVGKSVLLGMMTRFTEADIIVVGLIGERGREVKEFIEHILGEEGLKRSVVVASPADDAPLMRLRAAMYCT 247 (451)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCCCCEEEEEEeCcCcHhHHHHHHHHhhcCCccEEEEEEECCCCCHHHHHHHHHHHH
Confidence 4578999999999999999997732211001111111 455555544332211 0011111 11222
Q ss_pred HHHHHh--cCCeEEEEecccC
Q 040913 254 ILRDFL--TNKKYFIALDDVC 272 (425)
Q Consensus 254 ~l~~~l--~~kr~LlVLDdvw 272 (425)
.+.+++ +++++||++||+-
T Consensus 248 aiAEyfrd~G~~VLl~~DslT 268 (451)
T PRK05688 248 RIAEYFRDKGKNVLLLMDSLT 268 (451)
T ss_pred HHHHHHHHCCCCEEEEecchh
Confidence 344444 5899999999994
No 346
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=94.25 E-value=0.064 Score=51.86 Aligned_cols=130 Identities=16% Similarity=0.163 Sum_probs=76.3
Q ss_pred CCCCCCCCcccchhhHHHHHHHHhcC----C-------CCcEEEEEEecCCCchHHHHHHhhcCccccccccchHHHHHH
Q 040913 161 SEGQPRLDISEFERAREEWFDLLIEG----P-------IGLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWILDD 229 (425)
Q Consensus 161 ~~~~~~~~~vGr~~~~~~l~~~L~~~----~-------~~~~vi~IvG~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~~ 229 (425)
.|.+...++=|.++.+++|.+.+.-+ + ..++=|..+|++|.|||-||++|.| +....|=.++= .+
T Consensus 145 ~PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~--~T~AtFIrvvg--SE 220 (406)
T COG1222 145 KPDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVAN--QTDATFIRVVG--SE 220 (406)
T ss_pred CCCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHh--ccCceEEEecc--HH
Confidence 34444556667899888887776432 1 3466678999999999999999999 66666622110 11
Q ss_pred HHHHhCCCCCCCccCCCCHHHHHHHHHHHhc-CCeEEEEecccCCCh-------------h---hHHHHHhhCC--CCCC
Q 040913 230 IIRSLMPPSRVTVIIGEDYKLKKSILRDFLT-NKKYFIALDDVCHNI-------------E---IWDDLEEVLP--DNQN 290 (425)
Q Consensus 230 il~~l~~~~~~~~~~~~~~~~l~~~l~~~l~-~kr~LlVLDdvw~~~-------------~---~~~~l~~~l~--~~~~ 290 (425)
+...... +...+...+.+.-+ ...+.|.+|.+. .. + ..-+|..-+. +...
T Consensus 221 lVqKYiG----------EGaRlVRelF~lArekaPsIIFiDEID-AIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~ 289 (406)
T COG1222 221 LVQKYIG----------EGARLVRELFELAREKAPSIIFIDEID-AIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRG 289 (406)
T ss_pred HHHHHhc----------cchHHHHHHHHHHhhcCCeEEEEechh-hhhcccccCCCCchHHHHHHHHHHHHhccCCCCCC
Confidence 1111111 11334444444444 467889999885 21 1 2222333332 2233
Q ss_pred CcEEEEecCChhHHH
Q 040913 291 GSRVLITVINPSLLT 305 (425)
Q Consensus 291 gskIivTTR~~~va~ 305 (425)
.-|||..|...++..
T Consensus 290 nvKVI~ATNR~D~LD 304 (406)
T COG1222 290 NVKVIMATNRPDILD 304 (406)
T ss_pred CeEEEEecCCccccC
Confidence 468998888777655
No 347
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=94.25 E-value=0.028 Score=45.26 Aligned_cols=20 Identities=20% Similarity=0.358 Sum_probs=17.7
Q ss_pred EEEEecCCCchHHHHHHhhc
Q 040913 193 VAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 193 i~IvG~gGvGKTtLa~~v~~ 212 (425)
|-|+|.+|+|||+||+.+..
T Consensus 1 I~i~G~~G~GKS~l~~~l~~ 20 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAK 20 (107)
T ss_pred CEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999776
No 348
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=94.22 E-value=0.031 Score=47.94 Aligned_cols=21 Identities=24% Similarity=0.211 Sum_probs=19.0
Q ss_pred EEEEEecCCCchHHHHHHhhc
Q 040913 192 VVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 192 vi~IvG~gGvGKTtLa~~v~~ 212 (425)
||.|+|.+|+||||||+.+..
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~ 21 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEE 21 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHH
Confidence 578999999999999998877
No 349
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=94.22 E-value=0.036 Score=48.77 Aligned_cols=23 Identities=9% Similarity=0.128 Sum_probs=20.5
Q ss_pred cEEEEEEecCCCchHHHHHHhhc
Q 040913 190 LSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
...|.|+|+.|+||||+++.+.+
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~ 26 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQ 26 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHH
Confidence 34689999999999999999987
No 350
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=94.20 E-value=0.14 Score=52.59 Aligned_cols=47 Identities=21% Similarity=0.082 Sum_probs=37.1
Q ss_pred CCcccchhhHHHHHHHHhcCCCCcEEEEEEecCCCchHHHHHHhhcC
Q 040913 167 LDISEFERAREEWFDLLIEGPIGLSVVAILDSSGFDKTAFAADTYNN 213 (425)
Q Consensus 167 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLa~~v~~~ 213 (425)
..++|......++.+.+..-......+.|.|.+|+|||++|+.+++.
T Consensus 138 ~~lig~s~~~~~l~~~~~~~~~~~~~vli~Ge~GtGK~~lA~~ih~~ 184 (469)
T PRK10923 138 TDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALHRH 184 (469)
T ss_pred ccceecCHHHHHHHHHHHHHhccCCeEEEEeCCCCcHHHHHHHHHhc
Confidence 45889888888887777543333455779999999999999999885
No 351
>PRK12678 transcription termination factor Rho; Provisional
Probab=94.18 E-value=0.039 Score=56.93 Aligned_cols=93 Identities=15% Similarity=0.063 Sum_probs=50.6
Q ss_pred HHHHHHhcCCCCcEEEEEEecCCCchHHHHHHhhcCccccccccchHHH---------HHHHHHHhCCCCCCCccC----
Q 040913 178 EWFDLLIEGPIGLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWI---------LDDIIRSLMPPSRVTVII---- 244 (425)
Q Consensus 178 ~l~~~L~~~~~~~~vi~IvG~gGvGKTtLa~~v~~~~~~~~~F~~~~wv---------~~~il~~l~~~~~~~~~~---- 244 (425)
+++++|..=.. -.-..|+|.+|+|||||++.|.+... ..+=++.++| ..++.+.+....-....+
T Consensus 405 RvIDll~PIGk-GQR~LIvgpp~aGKTtLL~~IAn~i~-~n~~~~~~ivvLIgERpeEVtdm~rsVkgeVVasT~D~p~~ 482 (672)
T PRK12678 405 RVIDLIMPIGK-GQRGLIVSPPKAGKTTILQNIANAIT-TNNPECHLMVVLVDERPEEVTDMQRSVKGEVIASTFDRPPS 482 (672)
T ss_pred eeeeeeccccc-CCEeEEeCCCCCCHHHHHHHHHHHHh-hcCCCeEEEEEEEeCchhhHHHHHHhccceEEEECCCCCHH
Confidence 44555543221 23468999999999999999988211 1122222223 566666552111000000
Q ss_pred -CCCHHHHHHHHHHHh--cCCeEEEEecccC
Q 040913 245 -GEDYKLKKSILRDFL--TNKKYFIALDDVC 272 (425)
Q Consensus 245 -~~~~~~l~~~l~~~l--~~kr~LlVLDdvw 272 (425)
......+.-.+.++| .++.+||++|++-
T Consensus 483 ~~~~~a~~ai~~Ae~fre~G~dVlillDSlT 513 (672)
T PRK12678 483 DHTTVAELAIERAKRLVELGKDVVVLLDSIT 513 (672)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCEEEEEeCch
Confidence 011223334445555 5899999999984
No 352
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=94.17 E-value=0.15 Score=55.15 Aligned_cols=24 Identities=25% Similarity=0.184 Sum_probs=20.9
Q ss_pred CcEEEEEEecCCCchHHHHHHhhc
Q 040913 189 GLSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 189 ~~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
.-..++|+|..|+|||||++.+..
T Consensus 478 ~Ge~vaIvG~sGsGKSTLlklL~g 501 (686)
T TIGR03797 478 PGEFVAIVGPSGSGKSTLLRLLLG 501 (686)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 356799999999999999999864
No 353
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=94.17 E-value=0.057 Score=52.08 Aligned_cols=37 Identities=14% Similarity=0.100 Sum_probs=27.5
Q ss_pred HHHHHHHHhcCCCCcEEEEEEecCCCchHHHHHHhhc
Q 040913 176 REEWFDLLIEGPIGLSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 176 ~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
...+++-+........+|+|+|.+|+|||||+..+..
T Consensus 20 ~~~~~~~~~~~~~~~~~i~i~G~~G~GKttl~~~l~~ 56 (300)
T TIGR00750 20 AKQLLDRIMPYTGNAHRVGITGTPGAGKSTLLEALGM 56 (300)
T ss_pred HHHHHHhCCcccCCceEEEEECCCCCCHHHHHHHHHH
Confidence 3445554544445689999999999999999988665
No 354
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=94.14 E-value=0.13 Score=48.72 Aligned_cols=33 Identities=24% Similarity=0.345 Sum_probs=25.1
Q ss_pred HHHHHHHhcCCCCcEEEEEEecCCCchHHHHHHhhc
Q 040913 177 EEWFDLLIEGPIGLSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 177 ~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
..+++.+.... +-+-++|+.|+|||++++...+
T Consensus 23 ~~ll~~l~~~~---~pvLl~G~~GtGKT~li~~~l~ 55 (272)
T PF12775_consen 23 SYLLDLLLSNG---RPVLLVGPSGTGKTSLIQNFLS 55 (272)
T ss_dssp HHHHHHHHHCT---EEEEEESSTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHcC---CcEEEECCCCCchhHHHHhhhc
Confidence 44566666543 4457899999999999998775
No 355
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.13 E-value=0.15 Score=51.22 Aligned_cols=22 Identities=27% Similarity=0.292 Sum_probs=19.2
Q ss_pred cEEEEEEecCCCchHHHHHHhh
Q 040913 190 LSVVAILDSSGFDKTAFAADTY 211 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~ 211 (425)
..+++++|..|+||||++..+.
T Consensus 191 g~vi~lvGpnG~GKTTtlakLA 212 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKLA 212 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 5799999999999999887554
No 356
>PRK07960 fliI flagellum-specific ATP synthase; Validated
Probab=94.13 E-value=0.085 Score=53.25 Aligned_cols=83 Identities=8% Similarity=0.091 Sum_probs=46.3
Q ss_pred cEEEEEEecCCCchHHHHHHhhcCccccccccchHHH----HHHHHHHhCCCCCCC------ccCCCCH------HHHHH
Q 040913 190 LSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWI----LDDIIRSLMPPSRVT------VIIGEDY------KLKKS 253 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~~~~~~~~F~~~~wv----~~~il~~l~~~~~~~------~~~~~~~------~~l~~ 253 (425)
-..++|+|..|+|||||.+.+.+........-..++. ..+++..+....... ...+... ....-
T Consensus 175 Gqri~I~G~sG~GKTTLL~~Ia~~~~~d~iv~g~Igerg~ev~e~~~~~~~~~~~~~tvVv~~~ad~~~~~r~~~~~~a~ 254 (455)
T PRK07960 175 GQRMGLFAGSGVGKSVLLGMMARYTQADVIVVGLIGERGREVKDFIENILGAEGRARSVVIAAPADVSPLLRMQGAAYAT 254 (455)
T ss_pred CcEEEEECCCCCCccHHHHHHhCCCCCCEEEEEEEEECCeEHHHHHHhhcCcCCCceEEEEEECCCCCHHHHHHHHHHHH
Confidence 4678999999999999999988743221100112222 555555544432211 1111111 11122
Q ss_pred HHHHHh--cCCeEEEEecccC
Q 040913 254 ILRDFL--TNKKYFIALDDVC 272 (425)
Q Consensus 254 ~l~~~l--~~kr~LlVLDdvw 272 (425)
.+.+++ ++|.+|+++||+-
T Consensus 255 tiAEyfrd~G~~Vll~~DslT 275 (455)
T PRK07960 255 RIAEDFRDRGQHVLLIMDSLT 275 (455)
T ss_pred HHHHHHHHcCCCeEEEecchh
Confidence 244444 4899999999994
No 357
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=94.13 E-value=0.22 Score=53.23 Aligned_cols=93 Identities=18% Similarity=0.220 Sum_probs=50.7
Q ss_pred CCcccchhhHHHHHHHH---hcCC-------CCcEEEEEEecCCCchHHHHHHhhcCccccccccchHHHHHHHHHHhCC
Q 040913 167 LDISEFERAREEWFDLL---IEGP-------IGLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWILDDIIRSLMP 236 (425)
Q Consensus 167 ~~~vGr~~~~~~l~~~L---~~~~-------~~~~vi~IvG~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~~il~~l~~ 236 (425)
.++.|.+..++++.+.+ .... .-.+-|.++|++|+||||+|+.+.+ +...+|-..- ..++....
T Consensus 152 ~di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~--~~~~~f~~is--~~~~~~~~-- 225 (644)
T PRK10733 152 ADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAG--EAKVPFFTIS--GSDFVEMF-- 225 (644)
T ss_pred HHHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHH--HcCCCEEEEe--hHHhHHhh--
Confidence 35667666666554443 2211 1133488999999999999999988 4433431100 00111100
Q ss_pred CCCCCccCCCCHHHHHHHHHHHhcCCeEEEEecccC
Q 040913 237 PSRVTVIIGEDYKLKKSILRDFLTNKKYFIALDDVC 272 (425)
Q Consensus 237 ~~~~~~~~~~~~~~l~~~l~~~l~~kr~LlVLDdvw 272 (425)
.......+...+...-....++|++|++.
T Consensus 226 -------~g~~~~~~~~~f~~a~~~~P~IifIDEiD 254 (644)
T PRK10733 226 -------VGVGASRVRDMFEQAKKAAPCIIFIDEID 254 (644)
T ss_pred -------hcccHHHHHHHHHHHHhcCCcEEEehhHh
Confidence 01122333333444444577899999985
No 358
>COG3903 Predicted ATPase [General function prediction only]
Probab=94.11 E-value=0.011 Score=58.04 Aligned_cols=108 Identities=15% Similarity=0.099 Sum_probs=62.9
Q ss_pred CcEEEEEEecCCCchHHHHHHhhcCccccccccchHHH-----------HHHH-HHHhCCCCCCCccCCCCHHHHHHHHH
Q 040913 189 GLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWI-----------LDDI-IRSLMPPSRVTVIIGEDYKLKKSILR 256 (425)
Q Consensus 189 ~~~vi~IvG~gGvGKTtLa~~v~~~~~~~~~F~~~~wv-----------~~~i-l~~l~~~~~~~~~~~~~~~~l~~~l~ 256 (425)
..+.+.++|.|||||||++-.+-. +..-|....|. +--+ ...+.-. ..+-+.....+.
T Consensus 13 ~~RlvtL~g~ggvgkttl~~~~a~---~~~~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~-------~~~g~~~~~~~~ 82 (414)
T COG3903 13 ALRLVTLTGAGGVGKTTLALQAAH---AASEYADGVAFVDLAPITDPALVFPTLAGALGLH-------VQPGDSAVDTLV 82 (414)
T ss_pred hhheeeeeccCccceehhhhhhHh---HhhhcccceeeeeccccCchhHhHHHHHhhcccc-------cccchHHHHHHH
Confidence 478899999999999999987766 33344332222 0111 1111111 122244555677
Q ss_pred HHhcCCeEEEEecccCCChhhHHHHHhhCCCCCCCcEEEEecCChhHHHH
Q 040913 257 DFLTNKKYFIALDDVCHNIEIWDDLEEVLPDNQNGSRVLITVINPSLLTS 306 (425)
Q Consensus 257 ~~l~~kr~LlVLDdvw~~~~~~~~l~~~l~~~~~gskIivTTR~~~va~~ 306 (425)
..+.++|.++|+||..|-.+.=..+...+-.+.+.-.|+.|+|.......
T Consensus 83 ~~~~~rr~llvldncehl~~~~a~~i~all~~~~~~~~~atsre~~l~~g 132 (414)
T COG3903 83 RRIGDRRALLVLDNCEHLLDACAALIVALLGACPRLAILATSREAILVAG 132 (414)
T ss_pred HHHhhhhHHHHhcCcHHHHHHHHHHHHHHHccchhhhhHHHhHhhhcccc
Confidence 77889999999999852111112222333344445678888887665544
No 359
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=94.10 E-value=0.082 Score=50.09 Aligned_cols=84 Identities=17% Similarity=0.037 Sum_probs=46.5
Q ss_pred cCCCCcEEEEEEecCCCchHHHHHHhhcCccccccccchHHH----------HHHHHHHhCCCCCCCccCCCCHH---HH
Q 040913 185 EGPIGLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWI----------LDDIIRSLMPPSRVTVIIGEDYK---LK 251 (425)
Q Consensus 185 ~~~~~~~vi~IvG~gGvGKTtLa~~v~~~~~~~~~F~~~~wv----------~~~il~~l~~~~~~~~~~~~~~~---~l 251 (425)
.+=+.-+++=|+|+.|+||||+|.+++-. .+..-...+|+ .+.+......+.. -....+.+ .+
T Consensus 55 GGl~~g~ItEiyG~~gsGKT~lal~~~~~--aq~~g~~a~fIDtE~~l~p~r~~~l~~~~~d~l~--v~~~~~~e~q~~i 130 (279)
T COG0468 55 GGLPRGRITEIYGPESSGKTTLALQLVAN--AQKPGGKAAFIDTEHALDPERAKQLGVDLLDNLL--VSQPDTGEQQLEI 130 (279)
T ss_pred CCcccceEEEEecCCCcchhhHHHHHHHH--hhcCCCeEEEEeCCCCCCHHHHHHHHHhhhccee--EecCCCHHHHHHH
Confidence 33345788999999999999999887653 22222233444 3334443211111 11112333 33
Q ss_pred HHHHHHHhcCCeEEEEecccC
Q 040913 252 KSILRDFLTNKKYFIALDDVC 272 (425)
Q Consensus 252 ~~~l~~~l~~kr~LlVLDdvw 272 (425)
.+.+......+--|||+|-|-
T Consensus 131 ~~~~~~~~~~~i~LvVVDSva 151 (279)
T COG0468 131 AEKLARSGAEKIDLLVVDSVA 151 (279)
T ss_pred HHHHHHhccCCCCEEEEecCc
Confidence 444444444446799999985
No 360
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=94.09 E-value=0.048 Score=53.46 Aligned_cols=47 Identities=17% Similarity=0.131 Sum_probs=37.9
Q ss_pred CCCCCcccchhhHHHHHHHHhcCCCCcEEEEEEecCCCchHHHHHHhhc
Q 040913 164 QPRLDISEFERAREEWFDLLIEGPIGLSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 164 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
.+-+.+||.++.+..|+..+.++. ++-|.|.|..|+||||+|+.+++
T Consensus 14 ~pf~~ivGq~~~k~al~~~~~~p~--~~~vli~G~~GtGKs~~ar~~~~ 60 (350)
T CHL00081 14 FPFTAIVGQEEMKLALILNVIDPK--IGGVMIMGDRGTGKSTTIRALVD 60 (350)
T ss_pred CCHHHHhChHHHHHHHHHhccCCC--CCeEEEEcCCCCCHHHHHHHHHH
Confidence 345678999998888887777654 45566999999999999999865
No 361
>PRK14737 gmk guanylate kinase; Provisional
Probab=94.09 E-value=0.046 Score=48.81 Aligned_cols=25 Identities=12% Similarity=0.120 Sum_probs=22.3
Q ss_pred CcEEEEEEecCCCchHHHHHHhhcC
Q 040913 189 GLSVVAILDSSGFDKTAFAADTYNN 213 (425)
Q Consensus 189 ~~~vi~IvG~gGvGKTtLa~~v~~~ 213 (425)
...+|.|+|++|+|||||++.+.+.
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~ 27 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEE 27 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhc
Confidence 3678999999999999999999873
No 362
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=94.05 E-value=0.057 Score=49.19 Aligned_cols=44 Identities=23% Similarity=0.115 Sum_probs=35.3
Q ss_pred CCcccchhhHHHHHHHHhcCCCCcEEEEEEecCCCchHHHHHHhhc
Q 040913 167 LDISEFERAREEWFDLLIEGPIGLSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 167 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
.++||-++-.+++--...+++ .+-+.|.||+|+||||-+..+.+
T Consensus 27 ~dIVGNe~tv~rl~via~~gn--mP~liisGpPG~GKTTsi~~LAr 70 (333)
T KOG0991|consen 27 QDIVGNEDTVERLSVIAKEGN--MPNLIISGPPGTGKTTSILCLAR 70 (333)
T ss_pred HHhhCCHHHHHHHHHHHHcCC--CCceEeeCCCCCchhhHHHHHHH
Confidence 568999999998877766665 66778999999999997666554
No 363
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=94.05 E-value=0.074 Score=51.54 Aligned_cols=31 Identities=16% Similarity=0.199 Sum_probs=23.5
Q ss_pred HHHhcCCCCcEEEEEEecCCCchHHHHHHhh
Q 040913 181 DLLIEGPIGLSVVAILDSSGFDKTAFAADTY 211 (425)
Q Consensus 181 ~~L~~~~~~~~vi~IvG~gGvGKTtLa~~v~ 211 (425)
++|..+=..-+++-|+|++|+|||+|+.++.
T Consensus 87 ~lLgGGi~~G~iteI~G~~GsGKTql~lqla 117 (313)
T TIGR02238 87 GILGGGIESMSITEVFGEFRCGKTQLSHTLC 117 (313)
T ss_pred HHhCCCCcCCeEEEEECCCCCCcCHHHHHHH
Confidence 3444433456888999999999999998765
No 364
>PRK13948 shikimate kinase; Provisional
Probab=94.05 E-value=0.043 Score=48.75 Aligned_cols=24 Identities=17% Similarity=0.123 Sum_probs=21.4
Q ss_pred CcEEEEEEecCCCchHHHHHHhhc
Q 040913 189 GLSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 189 ~~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
....|.++||.|+||||+++.+.+
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~ 32 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSR 32 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 356788999999999999999987
No 365
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=94.04 E-value=0.15 Score=54.03 Aligned_cols=24 Identities=25% Similarity=0.207 Sum_probs=21.0
Q ss_pred CcEEEEEEecCCCchHHHHHHhhc
Q 040913 189 GLSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 189 ~~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
.-..++|+|..|.|||||++.+..
T Consensus 360 ~G~~~~ivG~sGsGKSTL~~ll~g 383 (585)
T TIGR01192 360 AGQTVAIVGPTGAGKTTLINLLQR 383 (585)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcc
Confidence 456899999999999999998864
No 366
>PRK06936 type III secretion system ATPase; Provisional
Probab=94.02 E-value=0.12 Score=52.10 Aligned_cols=79 Identities=14% Similarity=0.240 Sum_probs=45.8
Q ss_pred cEEEEEEecCCCchHHHHHHhhcCccccccccchHHH--------HHHHHHHhCCCCCCC------ccCCCCH-H-----
Q 040913 190 LSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWI--------LDDIIRSLMPPSRVT------VIIGEDY-K----- 249 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~~~~~~~~F~~~~wv--------~~~il~~l~~~~~~~------~~~~~~~-~----- 249 (425)
-..++|.|..|+|||||.+.+.+.... +..+.+ ..+++.......... ...+... .
T Consensus 162 Gq~~~I~G~sG~GKStLl~~Ia~~~~~----dv~V~~liGERgrEv~ef~~~~l~~~~l~rtvvv~atsd~p~~~R~~a~ 237 (439)
T PRK06936 162 GQRMGIFAAAGGGKSTLLASLIRSAEV----DVTVLALIGERGREVREFIESDLGEEGLRKAVLVVATSDRPSMERAKAG 237 (439)
T ss_pred CCEEEEECCCCCChHHHHHHHhcCCCC----CEEEEEEEccCcHHHHHHHHHHhcccccceeEEEEECCCCCHHHHHHHH
Confidence 457899999999999999999984332 233333 555554432221111 0111111 1
Q ss_pred HHHHHHHHHh--cCCeEEEEecccC
Q 040913 250 LKKSILRDFL--TNKKYFIALDDVC 272 (425)
Q Consensus 250 ~l~~~l~~~l--~~kr~LlVLDdvw 272 (425)
...-.+.+++ +||++|+++||+-
T Consensus 238 ~~a~tiAEyfrd~G~~Vll~~DslT 262 (439)
T PRK06936 238 FVATSIAEYFRDQGKRVLLLMDSVT 262 (439)
T ss_pred HHHHHHHHHHHHcCCCEEEeccchh
Confidence 1122344444 5899999999994
No 367
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=94.01 E-value=0.047 Score=47.12 Aligned_cols=23 Identities=26% Similarity=0.237 Sum_probs=20.5
Q ss_pred cEEEEEEecCCCchHHHHHHhhc
Q 040913 190 LSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
.+++.|+|.+|+||||+.+.+-.
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~ 26 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALK 26 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHH
Confidence 58999999999999999887766
No 368
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=94.01 E-value=0.042 Score=47.65 Aligned_cols=23 Identities=13% Similarity=0.234 Sum_probs=20.8
Q ss_pred cEEEEEEecCCCchHHHHHHhhc
Q 040913 190 LSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
.+|++|+|..|+|||||...+..
T Consensus 2 ~~Il~ivG~k~SGKTTLie~lv~ 24 (161)
T COG1763 2 MKILGIVGYKNSGKTTLIEKLVR 24 (161)
T ss_pred CcEEEEEecCCCChhhHHHHHHH
Confidence 57999999999999999998865
No 369
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=94.00 E-value=0.024 Score=46.97 Aligned_cols=27 Identities=22% Similarity=0.290 Sum_probs=18.0
Q ss_pred EEEEecCCCchHHHHHHhhcCcccccccc
Q 040913 193 VAILDSSGFDKTAFAADTYNNNHVKFYFD 221 (425)
Q Consensus 193 i~IvG~gGvGKTtLa~~v~~~~~~~~~F~ 221 (425)
|-++|.+|+||||+|+.+.. .+...|.
T Consensus 2 vLleg~PG~GKT~la~~lA~--~~~~~f~ 28 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALAR--SLGLSFK 28 (131)
T ss_dssp EEEES---HHHHHHHHHHHH--HTT--EE
T ss_pred EeeECCCccHHHHHHHHHHH--HcCCcee
Confidence 56899999999999999987 4555553
No 370
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=94.00 E-value=0.039 Score=47.95 Aligned_cols=20 Identities=25% Similarity=0.305 Sum_probs=18.2
Q ss_pred EEEEEecCCCchHHHHHHhh
Q 040913 192 VVAILDSSGFDKTAFAADTY 211 (425)
Q Consensus 192 vi~IvG~gGvGKTtLa~~v~ 211 (425)
.|.|.|.+|+||||++..+-
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 58999999999999999876
No 371
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=93.98 E-value=0.078 Score=55.64 Aligned_cols=47 Identities=15% Similarity=-0.062 Sum_probs=35.2
Q ss_pred CCCcccchhhHHHHHHHHhcCCCCcEEEEEEecCCCchHHHHHHhhc
Q 040913 166 RLDISEFERAREEWFDLLIEGPIGLSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 166 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
.+..+.|.+-.+.|.+.......+..+|.|+|+.|+||||+|+.+..
T Consensus 368 pP~~f~rpeV~~iL~~~~~~r~~~g~~Ivl~Gl~GSGKSTia~~La~ 414 (568)
T PRK05537 368 IPEWFSFPEVVAELRRTYPPRHKQGFTVFFTGLSGAGKSTIAKALMV 414 (568)
T ss_pred CChhhcHHHHHHHHHHHhccccCCCeEEEEECCCCChHHHHHHHHHH
Confidence 34456666666655555555455567899999999999999999987
No 372
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=93.97 E-value=0.074 Score=50.15 Aligned_cols=82 Identities=12% Similarity=0.123 Sum_probs=48.6
Q ss_pred EEEEEEecCCCchHHHHHHhhcCccc--cccccchHHH--------HHHHHHHhCCCCCCC-------ccCCCC-----H
Q 040913 191 SVVAILDSSGFDKTAFAADTYNNNHV--KFYFDCLAWI--------LDDIIRSLMPPSRVT-------VIIGED-----Y 248 (425)
Q Consensus 191 ~vi~IvG~gGvGKTtLa~~v~~~~~~--~~~F~~~~wv--------~~~il~~l~~~~~~~-------~~~~~~-----~ 248 (425)
.-++|.|-.|+|||+|+..+.++..+ +.+-+.++++ ..+++..+....... ..+... .
T Consensus 70 QR~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~IGeR~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~r~~a 149 (276)
T cd01135 70 QKIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFAAMGITMEDARFFKDDFEETGALERVVLFLNLANDPTIERIIT 149 (276)
T ss_pred CEEEeecCCCCChhHHHHHHHHhhhccccCCCCEEEEEEeccccHHHHHHHHHhhhcCCcceEEEEEecCCCCHHHHHHH
Confidence 45799999999999999988875431 1223445555 566666665543211 001111 1
Q ss_pred HHHHHHHHHHh---cCCeEEEEecccC
Q 040913 249 KLKKSILRDFL---TNKKYFIALDDVC 272 (425)
Q Consensus 249 ~~l~~~l~~~l---~~kr~LlVLDdvw 272 (425)
....-.+.+++ +++++|+++||+-
T Consensus 150 ~~~a~aiAEyfrd~~g~~VLl~~D~lt 176 (276)
T cd01135 150 PRMALTTAEYLAYEKGKHVLVILTDMT 176 (276)
T ss_pred HHHHHHHHHHHHhccCCeEEEEEcChh
Confidence 11233445555 2789999999995
No 373
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=93.94 E-value=0.049 Score=46.66 Aligned_cols=23 Identities=17% Similarity=0.333 Sum_probs=19.8
Q ss_pred EEEEEecCCCchHHHHHHhhcCc
Q 040913 192 VVAILDSSGFDKTAFAADTYNNN 214 (425)
Q Consensus 192 vi~IvG~gGvGKTtLa~~v~~~~ 214 (425)
-|.++|.+|+|||||+..+.++.
T Consensus 2 ki~~~G~~~~GKTsl~~~l~~~~ 24 (164)
T cd04139 2 KVIVVGAGGVGKSALTLQFMYDE 24 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 37899999999999999988643
No 374
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=93.93 E-value=1.4 Score=48.13 Aligned_cols=114 Identities=13% Similarity=0.073 Sum_probs=57.2
Q ss_pred cEEEEEEecCCCchHHHHHHhhcCccc--cccc-cch--HHH--HHHHHHHhCCCCCCCccCCCCHHHHHHHHHHHhc--
Q 040913 190 LSVVAILDSSGFDKTAFAADTYNNNHV--KFYF-DCL--AWI--LDDIIRSLMPPSRVTVIIGEDYKLKKSILRDFLT-- 260 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~~~~~--~~~F-~~~--~wv--~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~l~-- 260 (425)
.+++.|.|+.+.||||+.+.+.-..-. ...| ++. +.+ +..|...++..... .....+...-+..+...+.
T Consensus 327 ~~~~iITGpN~gGKTt~lktigl~~~maq~G~~vpa~~~~~i~~~~~i~~~ig~~~si-~~~lStfS~~m~~~~~Il~~~ 405 (782)
T PRK00409 327 KTVLVITGPNTGGKTVTLKTLGLAALMAKSGLPIPANEPSEIPVFKEIFADIGDEQSI-EQSLSTFSGHMTNIVRILEKA 405 (782)
T ss_pred ceEEEEECCCCCCcHHHHHHHHHHHHHHHhCCCcccCCCccccccceEEEecCCccch-hhchhHHHHHHHHHHHHHHhC
Confidence 568889999999999999887531100 0011 110 011 22233333322111 0011111222222233332
Q ss_pred CCeEEEEecccCC--ChhhHHHH----HhhCCCCCCCcEEEEecCChhHHHH
Q 040913 261 NKKYFIALDDVCH--NIEIWDDL----EEVLPDNQNGSRVLITVINPSLLTS 306 (425)
Q Consensus 261 ~kr~LlVLDdvw~--~~~~~~~l----~~~l~~~~~gskIivTTR~~~va~~ 306 (425)
..+-|++||..-. +...-..+ ...+. ..|+.+|+||....++..
T Consensus 406 ~~~sLvLlDE~~~GtDp~eg~ala~aile~l~--~~~~~vIitTH~~el~~~ 455 (782)
T PRK00409 406 DKNSLVLFDELGAGTDPDEGAALAISILEYLR--KRGAKIIATTHYKELKAL 455 (782)
T ss_pred CcCcEEEecCCCCCCCHHHHHHHHHHHHHHHH--HCCCEEEEECChHHHHHH
Confidence 4778999999862 12222222 22222 247899999999887765
No 375
>PHA02774 E1; Provisional
Probab=93.93 E-value=0.17 Score=52.41 Aligned_cols=36 Identities=17% Similarity=0.153 Sum_probs=26.8
Q ss_pred HHHHHHHHhcCCCCcEEEEEEecCCCchHHHHHHhhc
Q 040913 176 REEWFDLLIEGPIGLSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 176 ~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
...+..+|. +.++...+.|+|++|.|||.+|..+.+
T Consensus 421 l~~lk~~l~-~~PKknciv~~GPP~TGKS~fa~sL~~ 456 (613)
T PHA02774 421 LTALKDFLK-GIPKKNCLVIYGPPDTGKSMFCMSLIK 456 (613)
T ss_pred HHHHHHHHh-cCCcccEEEEECCCCCCHHHHHHHHHH
Confidence 344455553 434456899999999999999998887
No 376
>PRK13946 shikimate kinase; Provisional
Probab=93.93 E-value=0.041 Score=48.93 Aligned_cols=23 Identities=13% Similarity=0.130 Sum_probs=20.9
Q ss_pred cEEEEEEecCCCchHHHHHHhhc
Q 040913 190 LSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
.+.|.++|+.|+||||+++.+.+
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~ 32 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLAT 32 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999999988
No 377
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=93.91 E-value=0.051 Score=44.13 Aligned_cols=21 Identities=19% Similarity=0.278 Sum_probs=19.4
Q ss_pred EEEEecCCCchHHHHHHhhcC
Q 040913 193 VAILDSSGFDKTAFAADTYNN 213 (425)
Q Consensus 193 i~IvG~gGvGKTtLa~~v~~~ 213 (425)
|+|+|+.|+|||||...+.+.
T Consensus 2 V~iiG~~~~GKSTlin~l~~~ 22 (116)
T PF01926_consen 2 VAIIGRPNVGKSTLINALTGK 22 (116)
T ss_dssp EEEEESTTSSHHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHhcc
Confidence 789999999999999999973
No 378
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=93.90 E-value=0.05 Score=49.01 Aligned_cols=24 Identities=17% Similarity=0.122 Sum_probs=21.7
Q ss_pred cEEEEEEecCCCchHHHHHHhhcC
Q 040913 190 LSVVAILDSSGFDKTAFAADTYNN 213 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~~ 213 (425)
..+|.|.|.+|+||||+|+.+...
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~ 26 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARH 26 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 568999999999999999998883
No 379
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=93.89 E-value=0.049 Score=52.02 Aligned_cols=24 Identities=25% Similarity=0.270 Sum_probs=20.6
Q ss_pred CcEEEEEEecCCCchHHHHHHhhc
Q 040913 189 GLSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 189 ~~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
..++|.++|++|+||||++..+..
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~ 216 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAA 216 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999998877654
No 380
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=93.88 E-value=0.069 Score=50.46 Aligned_cols=37 Identities=16% Similarity=0.132 Sum_probs=30.6
Q ss_pred HHHHHHHHhcCCCCcEEEEEEecCCCchHHHHHHhhc
Q 040913 176 REEWFDLLIEGPIGLSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 176 ~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
-.+|+..+.....+..+|+|.|.||+||+||.-.+-.
T Consensus 37 a~~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~ 73 (323)
T COG1703 37 ARELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGR 73 (323)
T ss_pred HHHHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHH
Confidence 3567777777766789999999999999999877655
No 381
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=93.87 E-value=0.039 Score=55.70 Aligned_cols=82 Identities=9% Similarity=0.167 Sum_probs=50.0
Q ss_pred cEEEEEEecCCCchHHHHHHhhcCccccccccchHHH--------HHHHHHHhCCCCCCC------ccCCCC------HH
Q 040913 190 LSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWI--------LDDIIRSLMPPSRVT------VIIGED------YK 249 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~~~~~~~~F~~~~wv--------~~~il~~l~~~~~~~------~~~~~~------~~ 249 (425)
-.-++|.|.+|+|||+|+.++.++.. +.+-+.++++ ..+++..+....... ...+.. ..
T Consensus 138 GQr~~Ifg~~G~GKt~l~~~~~~~~~-~~~~~v~V~~~iGeR~rEv~e~~~~~~~~~~l~rtvvv~~ts~~~~~~r~~~~ 216 (449)
T TIGR03305 138 GGKAGLFGGAGVGKTVLLTEMIHNMV-GQHQGVSIFCGIGERCREGEELYREMKEAGVLDNTVMVFGQMNEPPGARFRVG 216 (449)
T ss_pred CCEEEeecCCCCChhHHHHHHHHHHH-hcCCCEEEEEEeccCcHHHHHHHHHHhhccccceEEEEEeCCCCCHHHHHHHH
Confidence 34589999999999999998876532 2223455555 566666665432211 011111 11
Q ss_pred HHHHHHHHHhc---CCeEEEEecccC
Q 040913 250 LKKSILRDFLT---NKKYFIALDDVC 272 (425)
Q Consensus 250 ~l~~~l~~~l~---~kr~LlVLDdvw 272 (425)
...-.+.++++ ++++|+++||+-
T Consensus 217 ~~a~tiAEyfrd~~G~~VLl~~DslT 242 (449)
T TIGR03305 217 HTALTMAEYFRDDEKQDVLLLIDNIF 242 (449)
T ss_pred HHHHHHHHHHHHhcCCceEEEecChH
Confidence 23344556654 699999999994
No 382
>PLN02348 phosphoribulokinase
Probab=93.87 E-value=0.076 Score=52.57 Aligned_cols=26 Identities=23% Similarity=0.323 Sum_probs=23.1
Q ss_pred CCCcEEEEEEecCCCchHHHHHHhhc
Q 040913 187 PIGLSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 187 ~~~~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
....-+|+|.|.+|+||||+|+.+.+
T Consensus 46 ~~~p~IIGIaG~SGSGKSTfA~~L~~ 71 (395)
T PLN02348 46 DDGTVVIGLAADSGCGKSTFMRRLTS 71 (395)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 34578999999999999999999886
No 383
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=93.87 E-value=0.043 Score=49.88 Aligned_cols=24 Identities=17% Similarity=0.296 Sum_probs=20.8
Q ss_pred EEEEEEecCCCchHHHHHHhhcCc
Q 040913 191 SVVAILDSSGFDKTAFAADTYNNN 214 (425)
Q Consensus 191 ~vi~IvG~gGvGKTtLa~~v~~~~ 214 (425)
.-|.|+|++|+|||||+..+.++.
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~ 29 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDE 29 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCc
Confidence 457899999999999999988753
No 384
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=93.85 E-value=0.058 Score=48.67 Aligned_cols=24 Identities=25% Similarity=0.184 Sum_probs=21.1
Q ss_pred cEEEEEEecCCCchHHHHHHhhcC
Q 040913 190 LSVVAILDSSGFDKTAFAADTYNN 213 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~~ 213 (425)
-.|++|+|++|+|||||.+.+..=
T Consensus 28 Gevv~iiGpSGSGKSTlLRclN~L 51 (240)
T COG1126 28 GEVVVIIGPSGSGKSTLLRCLNGL 51 (240)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC
Confidence 468999999999999999988753
No 385
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=93.85 E-value=0.08 Score=52.55 Aligned_cols=35 Identities=23% Similarity=0.184 Sum_probs=25.3
Q ss_pred HHHHHHhcCCCCcEEEEEEecCCCchHHHHHHhhc
Q 040913 178 EWFDLLIEGPIGLSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 178 ~l~~~L~~~~~~~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
.+-+.|..+=..-.++.|.|.+|+|||||+.++..
T Consensus 70 eLD~vLgGGi~~GslvLI~G~pG~GKStLllq~a~ 104 (372)
T cd01121 70 ELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAA 104 (372)
T ss_pred HHHHhhcCCccCCeEEEEEeCCCCCHHHHHHHHHH
Confidence 33344433333457899999999999999988765
No 386
>PRK04182 cytidylate kinase; Provisional
Probab=93.85 E-value=0.048 Score=47.89 Aligned_cols=21 Identities=24% Similarity=0.241 Sum_probs=19.9
Q ss_pred EEEEEecCCCchHHHHHHhhc
Q 040913 192 VVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 192 vi~IvG~gGvGKTtLa~~v~~ 212 (425)
+|.|.|+.|+||||+|+.+.+
T Consensus 2 ~I~i~G~~GsGKstia~~la~ 22 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAE 22 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999987
No 387
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=93.84 E-value=0.069 Score=53.73 Aligned_cols=46 Identities=17% Similarity=0.128 Sum_probs=34.1
Q ss_pred CCcccchhhHHHHHHHHhcC--------------CCCcEEEEEEecCCCchHHHHHHhhc
Q 040913 167 LDISEFERAREEWFDLLIEG--------------PIGLSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 167 ~~~vGr~~~~~~l~~~L~~~--------------~~~~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
..++|.+..++.+...+... ....+-+.++|++|+|||+||+.+.+
T Consensus 71 ~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~ 130 (412)
T PRK05342 71 QYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLAR 130 (412)
T ss_pred hHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHH
Confidence 35899999888875554211 01235688999999999999999986
No 388
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=93.83 E-value=0.1 Score=49.31 Aligned_cols=122 Identities=16% Similarity=0.145 Sum_probs=62.5
Q ss_pred ccchhhHHHHHHHHhcCCCCcEEEEEEecCCCchHHHHHHhhcCccccccccchH-HH--HHHHHHHhCCCCCCCccCCC
Q 040913 170 SEFERAREEWFDLLIEGPIGLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLA-WI--LDDIIRSLMPPSRVTVIIGE 246 (425)
Q Consensus 170 vGr~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLa~~v~~~~~~~~~F~~~~-wv--~~~il~~l~~~~~~~~~~~~ 246 (425)
.|...+..+.+..+.... ..+|.|.|..|+||||++..+.+. +... ...+ .+ ..++. + ...........
T Consensus 62 lg~~~~~~~~l~~~~~~~--~GlilisG~tGSGKTT~l~all~~--i~~~-~~~iitiEdp~E~~--~-~~~~q~~v~~~ 133 (264)
T cd01129 62 LGLKPENLEIFRKLLEKP--HGIILVTGPTGSGKTTTLYSALSE--LNTP-EKNIITVEDPVEYQ--I-PGINQVQVNEK 133 (264)
T ss_pred cCCCHHHHHHHHHHHhcC--CCEEEEECCCCCcHHHHHHHHHhh--hCCC-CCeEEEECCCceec--C-CCceEEEeCCc
Confidence 454444444444444332 467999999999999999877552 2110 0011 11 00000 0 00000001111
Q ss_pred CHHHHHHHHHHHhcCCeEEEEecccCCChhhHH-HHHhhCCCCCCCcEEEEecCChhHH
Q 040913 247 DYKLKKSILRDFLTNKKYFIALDDVCHNIEIWD-DLEEVLPDNQNGSRVLITVINPSLL 304 (425)
Q Consensus 247 ~~~~l~~~l~~~l~~kr~LlVLDdvw~~~~~~~-~l~~~l~~~~~gskIivTTR~~~va 304 (425)
........++..|+...=.|+++.+. +.+... .+.... .|-.++-|....++.
T Consensus 134 ~~~~~~~~l~~~lR~~PD~i~vgEiR-~~e~a~~~~~aa~----tGh~v~tTlHa~~~~ 187 (264)
T cd01129 134 AGLTFARGLRAILRQDPDIIMVGEIR-DAETAEIAVQAAL----TGHLVLSTLHTNDAP 187 (264)
T ss_pred CCcCHHHHHHHHhccCCCEEEeccCC-CHHHHHHHHHHHH----cCCcEEEEeccCCHH
Confidence 11245667777888788889999998 776544 333332 244466555555544
No 389
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=93.82 E-value=0.09 Score=53.02 Aligned_cols=25 Identities=20% Similarity=0.193 Sum_probs=21.9
Q ss_pred CcEEEEEEecCCCchHHHHHHhhcC
Q 040913 189 GLSVVAILDSSGFDKTAFAADTYNN 213 (425)
Q Consensus 189 ~~~vi~IvG~gGvGKTtLa~~v~~~ 213 (425)
.-..++|+|..|+|||||++.+.+.
T Consensus 157 ~Gqri~I~G~sG~GKTtLL~~I~~~ 181 (442)
T PRK08927 157 RGQRMGIFAGSGVGKSVLLSMLARN 181 (442)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhc
Confidence 3567899999999999999999874
No 390
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=93.81 E-value=0.046 Score=48.50 Aligned_cols=23 Identities=17% Similarity=0.261 Sum_probs=20.9
Q ss_pred cEEEEEEecCCCchHHHHHHhhc
Q 040913 190 LSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
.++|.|+|+.|+|||||++.+.+
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~ 24 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQ 24 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 46788999999999999999987
No 391
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=93.81 E-value=0.24 Score=49.19 Aligned_cols=23 Identities=22% Similarity=0.231 Sum_probs=20.3
Q ss_pred cEEEEEEecCCCchHHHHHHhhc
Q 040913 190 LSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
-+-|+|||+.|+||+||...+..
T Consensus 613 dSRiaIVGPNGVGKSTlLkLL~G 635 (807)
T KOG0066|consen 613 DSRIAIVGPNGVGKSTLLKLLIG 635 (807)
T ss_pred cceeEEECCCCccHHHHHHHHhc
Confidence 46789999999999999998874
No 392
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=93.80 E-value=0.11 Score=54.75 Aligned_cols=65 Identities=11% Similarity=0.159 Sum_probs=41.5
Q ss_pred CcEEEEEEecCCCchHHHHHHhhcCccccccccchHHHHHHHHHHhCCCCCCCccCCCCHHHHHHHHHHHhcC-------
Q 040913 189 GLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWILDDIIRSLMPPSRVTVIIGEDYKLKKSILRDFLTN------- 261 (425)
Q Consensus 189 ~~~vi~IvG~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~------- 261 (425)
.-++....|++|.||||||.-|..+.-..-- .+ + -.+.-+...+..+|...++.
T Consensus 325 ~kKilLL~GppGlGKTTLAHViAkqaGYsVv-------------EI--N----ASDeRt~~~v~~kI~~avq~~s~l~ad 385 (877)
T KOG1969|consen 325 PKKILLLCGPPGLGKTTLAHVIAKQAGYSVV-------------EI--N----ASDERTAPMVKEKIENAVQNHSVLDAD 385 (877)
T ss_pred ccceEEeecCCCCChhHHHHHHHHhcCceEE-------------Ee--c----ccccccHHHHHHHHHHHHhhccccccC
Confidence 4688999999999999999998874321100 00 0 11223445555666666553
Q ss_pred -CeEEEEecccC
Q 040913 262 -KKYFIALDDVC 272 (425)
Q Consensus 262 -kr~LlVLDdvw 272 (425)
+..-||+|.+.
T Consensus 386 srP~CLViDEID 397 (877)
T KOG1969|consen 386 SRPVCLVIDEID 397 (877)
T ss_pred CCcceEEEeccc
Confidence 55559999996
No 393
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=93.79 E-value=0.036 Score=51.53 Aligned_cols=20 Identities=20% Similarity=0.268 Sum_probs=16.8
Q ss_pred EEecCCCchHHHHHHhhcCc
Q 040913 195 ILDSSGFDKTAFAADTYNNN 214 (425)
Q Consensus 195 IvG~gGvGKTtLa~~v~~~~ 214 (425)
|+|++|+||||+++.+.+.-
T Consensus 1 ViGpaGSGKTT~~~~~~~~~ 20 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWL 20 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHH
Confidence 68999999999999887743
No 394
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=93.79 E-value=0.086 Score=48.83 Aligned_cols=51 Identities=20% Similarity=0.133 Sum_probs=39.3
Q ss_pred CCCCCcccchhhHHH---HHHHHhcCC----CCcEEEEEEecCCCchHHHHHHhhcCc
Q 040913 164 QPRLDISEFERAREE---WFDLLIEGP----IGLSVVAILDSSGFDKTAFAADTYNNN 214 (425)
Q Consensus 164 ~~~~~~vGr~~~~~~---l~~~L~~~~----~~~~vi~IvG~gGvGKTtLa~~v~~~~ 214 (425)
..-++++|.++.+.+ |++.|.+++ -.++-|..+|++|.|||.+|+.+.|..
T Consensus 118 it~ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~ 175 (368)
T COG1223 118 ITLDDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEA 175 (368)
T ss_pred ccHhhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhccc
Confidence 344678998877654 567776653 247888999999999999999999943
No 395
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=93.78 E-value=0.058 Score=45.96 Aligned_cols=24 Identities=17% Similarity=0.212 Sum_probs=21.2
Q ss_pred cEEEEEEecCCCchHHHHHHhhcC
Q 040913 190 LSVVAILDSSGFDKTAFAADTYNN 213 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~~ 213 (425)
..+|+++|..|+|||||+..+...
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~ 26 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQ 26 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCC
Confidence 467999999999999999998764
No 396
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=93.76 E-value=0.039 Score=47.90 Aligned_cols=21 Identities=14% Similarity=0.142 Sum_probs=17.3
Q ss_pred EEEEecCCCchHHHHHHhhcC
Q 040913 193 VAILDSSGFDKTAFAADTYNN 213 (425)
Q Consensus 193 i~IvG~gGvGKTtLa~~v~~~ 213 (425)
|+|.|..|+|||||++.+...
T Consensus 2 I~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHc
Confidence 789999999999999999873
No 397
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=93.76 E-value=0.053 Score=47.06 Aligned_cols=22 Identities=23% Similarity=0.288 Sum_probs=20.4
Q ss_pred EEEEEEecCCCchHHHHHHhhc
Q 040913 191 SVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 191 ~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
++++|+|..|+|||||+..+..
T Consensus 2 ~vi~i~G~~gsGKTTli~~L~~ 23 (159)
T cd03116 2 KVIGFVGYSGSGKTTLLEKLIP 23 (159)
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999998886
No 398
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=93.75 E-value=0.16 Score=53.75 Aligned_cols=24 Identities=21% Similarity=0.281 Sum_probs=21.0
Q ss_pred CcEEEEEEecCCCchHHHHHHhhc
Q 040913 189 GLSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 189 ~~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
.-..++|+|..|.|||||++.+..
T Consensus 366 ~Ge~iaIvG~SGsGKSTLl~lL~g 389 (592)
T PRK10790 366 SRGFVALVGHTGSGKSTLASLLMG 389 (592)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 356899999999999999999864
No 399
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=93.73 E-value=0.05 Score=47.38 Aligned_cols=21 Identities=24% Similarity=0.248 Sum_probs=19.7
Q ss_pred EEEEEecCCCchHHHHHHhhc
Q 040913 192 VVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 192 vi~IvG~gGvGKTtLa~~v~~ 212 (425)
+|.|.|+.|+||||+|+.+.+
T Consensus 2 iI~i~G~~GSGKstia~~la~ 22 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAE 22 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 789999999999999999977
No 400
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=93.72 E-value=0.079 Score=48.36 Aligned_cols=24 Identities=25% Similarity=0.429 Sum_probs=20.8
Q ss_pred EEEEEEecCCCchHHHHHHhhcCc
Q 040913 191 SVVAILDSSGFDKTAFAADTYNNN 214 (425)
Q Consensus 191 ~vi~IvG~gGvGKTtLa~~v~~~~ 214 (425)
.-++|.|.+|+|||+|++.+.++.
T Consensus 16 qr~~I~g~~g~GKt~Ll~~i~~~~ 39 (215)
T PF00006_consen 16 QRIGIFGGAGVGKTVLLQEIANNQ 39 (215)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHC
T ss_pred CEEEEEcCcccccchhhHHHHhcc
Confidence 357899999999999999988754
No 401
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=93.72 E-value=0.049 Score=51.66 Aligned_cols=22 Identities=18% Similarity=0.256 Sum_probs=20.1
Q ss_pred EEEEEEecCCCchHHHHHHhhc
Q 040913 191 SVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 191 ~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
++|+|+|.+|+|||||+..+..
T Consensus 2 ~~i~i~G~~gSGKTTLi~~Li~ 23 (274)
T PRK14493 2 KVLSIVGYKATGKTTLVERLVD 23 (274)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999988876
No 402
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=93.71 E-value=0.051 Score=48.02 Aligned_cols=22 Identities=14% Similarity=0.178 Sum_probs=20.4
Q ss_pred EEEEEEecCCCchHHHHHHhhc
Q 040913 191 SVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 191 ~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
.++.|+|..|.|||||++.+..
T Consensus 4 e~i~l~G~sGsGKSTl~~~la~ 25 (176)
T PRK09825 4 ESYILMGVSGSGKSLIGSKIAA 25 (176)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999887
No 403
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=93.71 E-value=0.089 Score=51.53 Aligned_cols=91 Identities=14% Similarity=0.045 Sum_probs=48.3
Q ss_pred HHhcCCCCcEEEEEEecCCCchHHHHHHhhcCcccc----ccccchHHH----------HHHHHHHhCCCCCCC-----c
Q 040913 182 LLIEGPIGLSVVAILDSSGFDKTAFAADTYNNNHVK----FYFDCLAWI----------LDDIIRSLMPPSRVT-----V 242 (425)
Q Consensus 182 ~L~~~~~~~~vi~IvG~gGvGKTtLa~~v~~~~~~~----~~F~~~~wv----------~~~il~~l~~~~~~~-----~ 242 (425)
+|..+=..-+++-|.|.+|+|||+|+.+++-..... ..-...+|+ +.++...+....... -
T Consensus 118 lLgGGi~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~ia~~~g~d~~~~l~~I~~ 197 (344)
T PLN03187 118 LLGGGIETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVPIAERFGMDADAVLDNIIY 197 (344)
T ss_pred hcCCCCCCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHHHHHHcCCChhhhcCeEEE
Confidence 343333456788899999999999998875321111 101233455 455555554432110 1
Q ss_pred cCCCCHHHHHH---HHHHHhc-CCeEEEEecccC
Q 040913 243 IIGEDYKLKKS---ILRDFLT-NKKYFIALDDVC 272 (425)
Q Consensus 243 ~~~~~~~~l~~---~l~~~l~-~kr~LlVLDdvw 272 (425)
....+.+++.. .+...+. .+--|||+|.+-
T Consensus 198 ~~~~~~e~~~~~l~~l~~~i~~~~~~LvVIDSit 231 (344)
T PLN03187 198 ARAYTYEHQYNLLLGLAAKMAEEPFRLLIVDSVI 231 (344)
T ss_pred ecCCCHHHHHHHHHHHHHHHHhcCCCEEEEeCcH
Confidence 12234444333 3333333 345589999984
No 404
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=93.70 E-value=0.047 Score=47.86 Aligned_cols=21 Identities=19% Similarity=0.311 Sum_probs=17.7
Q ss_pred EEEEecCCCchHHHHHHhhcC
Q 040913 193 VAILDSSGFDKTAFAADTYNN 213 (425)
Q Consensus 193 i~IvG~gGvGKTtLa~~v~~~ 213 (425)
|.|.|.+|+|||||++.+.+.
T Consensus 2 i~iTG~pG~GKTTll~k~i~~ 22 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEE 22 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHH
Confidence 678999999999999998873
No 405
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=93.69 E-value=0.055 Score=48.85 Aligned_cols=23 Identities=13% Similarity=0.183 Sum_probs=20.6
Q ss_pred cEEEEEEecCCCchHHHHHHhhc
Q 040913 190 LSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
..+|+++|+.|+||||.|+.+-+
T Consensus 2 ~~iIglTG~igsGKStva~~~~~ 24 (201)
T COG0237 2 MLIIGLTGGIGSGKSTVAKILAE 24 (201)
T ss_pred ceEEEEecCCCCCHHHHHHHHHH
Confidence 46899999999999999998766
No 406
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=93.69 E-value=0.072 Score=55.58 Aligned_cols=44 Identities=23% Similarity=0.075 Sum_probs=35.7
Q ss_pred CCcccchhhHHHHHHHHhcCCCCcEEEEEEecCCCchHHHHHHhhc
Q 040913 167 LDISEFERAREEWFDLLIEGPIGLSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 167 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
.+++|.+..++.+...+.... ..-+-|+|++|+|||++|+.+++
T Consensus 65 ~~iiGqs~~i~~l~~al~~~~--~~~vLi~Ge~GtGKt~lAr~i~~ 108 (531)
T TIGR02902 65 DEIIGQEEGIKALKAALCGPN--PQHVIIYGPPGVGKTAAARLVLE 108 (531)
T ss_pred HHeeCcHHHHHHHHHHHhCCC--CceEEEECCCCCCHHHHHHHHHH
Confidence 358999999999988776543 33457899999999999999975
No 407
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=93.69 E-value=0.099 Score=50.77 Aligned_cols=35 Identities=23% Similarity=0.046 Sum_probs=26.0
Q ss_pred HHHHHHhcCCCCcEEEEEEecCCCchHHHHHHhhc
Q 040913 178 EWFDLLIEGPIGLSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 178 ~l~~~L~~~~~~~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
.|-.+|..+=..-.++-|.|.+|+|||||+..+..
T Consensus 84 ~lD~ll~gGi~~g~i~~i~G~~g~GKT~l~~~~~~ 118 (316)
T TIGR02239 84 ELDKLLGGGIETGSITEIFGEFRTGKTQLCHTLAV 118 (316)
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCcCHHHHHHHH
Confidence 33344444434578999999999999999988753
No 408
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=93.68 E-value=0.35 Score=49.34 Aligned_cols=56 Identities=21% Similarity=0.084 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHhcCCeEEEEecccCCChhhH---HHHHhhCCCCCCCcEEEEecCChhHHH
Q 040913 248 YKLKKSILRDFLTNKKYFIALDDVCHNIEIW---DDLEEVLPDNQNGSRVLITVINPSLLT 305 (425)
Q Consensus 248 ~~~l~~~l~~~l~~kr~LlVLDdvw~~~~~~---~~l~~~l~~~~~gskIivTTR~~~va~ 305 (425)
.......|.+.|=-+..|+.||+-- +.-+. .-|...|..-..+ .++|++|+++-..
T Consensus 225 GwrmR~aLAr~Lf~kP~LLLLDEPt-nhLDleA~~wLee~L~k~d~~-~lVi~sh~QDfln 283 (614)
T KOG0927|consen 225 GWRMRAALARALFQKPDLLLLDEPT-NHLDLEAIVWLEEYLAKYDRI-ILVIVSHSQDFLN 283 (614)
T ss_pred hHHHHHHHHHHHhcCCCEEEecCCc-cCCCHHHHHHHHHHHHhccCc-eEEEEecchhhhh
Confidence 3444556666666788999999975 44222 1233344332322 6899999876443
No 409
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=93.68 E-value=0.09 Score=51.45 Aligned_cols=45 Identities=11% Similarity=0.073 Sum_probs=35.4
Q ss_pred CCCcccchhhHHHHHHHHhcCCCCcEEEEEEecCCCchHHHHHHhhc
Q 040913 166 RLDISEFERAREEWFDLLIEGPIGLSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 166 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
-+.+||.+..+..++-.+.++. ..-+.|.|..|+|||||++.+..
T Consensus 3 f~~ivgq~~~~~al~~~~~~~~--~g~vli~G~~G~gKttl~r~~~~ 47 (337)
T TIGR02030 3 FTAIVGQDEMKLALLLNVIDPK--IGGVMVMGDRGTGKSTAVRALAA 47 (337)
T ss_pred ccccccHHHHHHHHHHHhcCCC--CCeEEEEcCCCCCHHHHHHHHHH
Confidence 3568899999888766666543 44567999999999999999864
No 410
>PLN02200 adenylate kinase family protein
Probab=93.67 E-value=0.056 Score=50.10 Aligned_cols=23 Identities=13% Similarity=0.117 Sum_probs=21.0
Q ss_pred cEEEEEEecCCCchHHHHHHhhc
Q 040913 190 LSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
..+|.|.|++|+||||+|+.+..
T Consensus 43 ~~ii~I~G~PGSGKsT~a~~La~ 65 (234)
T PLN02200 43 PFITFVLGGPGSGKGTQCEKIVE 65 (234)
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 57899999999999999998876
No 411
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=93.66 E-value=0.23 Score=52.03 Aligned_cols=24 Identities=25% Similarity=0.249 Sum_probs=21.2
Q ss_pred CcEEEEEEecCCCchHHHHHHhhc
Q 040913 189 GLSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 189 ~~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
.-..++|+|..|.|||||++.+..
T Consensus 343 ~G~~~~ivG~sGsGKSTL~~ll~g 366 (544)
T TIGR01842 343 AGEALAIIGPSGSGKSTLARLIVG 366 (544)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 356899999999999999999865
No 412
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=93.66 E-value=0.13 Score=49.93 Aligned_cols=32 Identities=22% Similarity=0.139 Sum_probs=24.3
Q ss_pred HHHhcCCCCcEEEEEEecCCCchHHHHHHhhc
Q 040913 181 DLLIEGPIGLSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 181 ~~L~~~~~~~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
+.|..+=....++-|+|++|+|||+|+.++.-
T Consensus 93 ~~l~GGi~~g~vtei~G~~GsGKT~l~~~~~~ 124 (317)
T PRK04301 93 ELLGGGIETQSITEFYGEFGSGKTQICHQLAV 124 (317)
T ss_pred HHhcCCccCCcEEEEECCCCCCHhHHHHHHHH
Confidence 33433334578889999999999999988764
No 413
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=93.61 E-value=0.14 Score=48.31 Aligned_cols=92 Identities=14% Similarity=0.237 Sum_probs=48.8
Q ss_pred EEEEEEecCCCchHHHH-HHhhcCccccccccchHHH--------HHHHHHHhCCCCCCC-------ccCCCCHHH----
Q 040913 191 SVVAILDSSGFDKTAFA-ADTYNNNHVKFYFDCLAWI--------LDDIIRSLMPPSRVT-------VIIGEDYKL---- 250 (425)
Q Consensus 191 ~vi~IvG~gGvGKTtLa-~~v~~~~~~~~~F~~~~wv--------~~~il~~l~~~~~~~-------~~~~~~~~~---- 250 (425)
.-++|.|..|+|||+|| +.+.+.. ...+-+ +++ ..++...+....... ..+......
T Consensus 70 Qr~~Ifg~~g~GKt~L~l~~i~~~~--~~~v~~-V~~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~a~ 146 (274)
T cd01132 70 QRELIIGDRQTGKTAIAIDTIINQK--GKKVYC-IYVAIGQKASTVAQVVKTLEEHGAMEYTIVVAATASDPAPLQYLAP 146 (274)
T ss_pred CEEEeeCCCCCCccHHHHHHHHHhc--CCCeEE-EEEecccchHHHHHHHHHHHhcCccceeEEEEeCCCCchhHHHHHH
Confidence 45889999999999995 6665521 111211 222 555666655332111 001111111
Q ss_pred -HHHHHHHHh--cCCeEEEEecccCCChhhHHHHHhhC
Q 040913 251 -KKSILRDFL--TNKKYFIALDDVCHNIEIWDDLEEVL 285 (425)
Q Consensus 251 -l~~~l~~~l--~~kr~LlVLDdvw~~~~~~~~l~~~l 285 (425)
..-.+.+++ +++..||++||+-.-...|.++...+
T Consensus 147 ~~a~aiAE~fr~~G~~Vlvl~DslTr~A~A~rEisl~~ 184 (274)
T cd01132 147 YTGCAMGEYFMDNGKHALIIYDDLSKQAVAYRQMSLLL 184 (274)
T ss_pred HHHHHHHHHHHHCCCCEEEEEcChHHHHHHHHHHHHhc
Confidence 122333333 48999999999951235666665444
No 414
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=93.61 E-value=0.1 Score=53.69 Aligned_cols=24 Identities=25% Similarity=0.256 Sum_probs=20.5
Q ss_pred CcEEEEEEecCCCchHHHHHHhhc
Q 040913 189 GLSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 189 ~~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
...+|+|+|.+|+||||++..+..
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa 372 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQ 372 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 357999999999999999877654
No 415
>PLN02796 D-glycerate 3-kinase
Probab=93.61 E-value=0.059 Score=52.47 Aligned_cols=24 Identities=21% Similarity=0.156 Sum_probs=22.0
Q ss_pred CcEEEEEEecCCCchHHHHHHhhc
Q 040913 189 GLSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 189 ~~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
.+-+|+|.|..|+|||||++.+..
T Consensus 99 ~pliIGI~G~sGSGKSTLa~~L~~ 122 (347)
T PLN02796 99 PPLVIGISAPQGCGKTTLVFALVY 122 (347)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHH
Confidence 567899999999999999999887
No 416
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=93.61 E-value=0.1 Score=50.42 Aligned_cols=82 Identities=16% Similarity=0.083 Sum_probs=49.0
Q ss_pred CcEEEEEEecCCCchHHHHHHhhcCccccccccchHHH------HHHHHHHhCCCCCCC-ccCCCCHHHHHHHHHHHhcC
Q 040913 189 GLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWI------LDDIIRSLMPPSRVT-VIIGEDYKLKKSILRDFLTN 261 (425)
Q Consensus 189 ~~~vi~IvG~gGvGKTtLa~~v~~~~~~~~~F~~~~wv------~~~il~~l~~~~~~~-~~~~~~~~~l~~~l~~~l~~ 261 (425)
.-+++-|+|..|+||||||.++.. ..+..-..++|+ -...+..++.....- -..+...++....+..+++.
T Consensus 52 ~G~ivEi~G~~ssGKttLaL~~ia--~~q~~g~~~a~ID~e~~ld~~~a~~lGvdl~rllv~~P~~~E~al~~~e~lirs 129 (322)
T PF00154_consen 52 RGRIVEIYGPESSGKTTLALHAIA--EAQKQGGICAFIDAEHALDPEYAESLGVDLDRLLVVQPDTGEQALWIAEQLIRS 129 (322)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHH--HHHHTT-EEEEEESSS---HHHHHHTT--GGGEEEEE-SSHHHHHHHHHHHHHT
T ss_pred cCceEEEeCCCCCchhhhHHHHHH--hhhcccceeEEecCcccchhhHHHhcCccccceEEecCCcHHHHHHHHHHHhhc
Confidence 467999999999999999998877 333333345566 334455555543321 11123445666666666654
Q ss_pred -CeEEEEecccC
Q 040913 262 -KKYFIALDDVC 272 (425)
Q Consensus 262 -kr~LlVLDdvw 272 (425)
.--++|+|-|-
T Consensus 130 g~~~lVVvDSv~ 141 (322)
T PF00154_consen 130 GAVDLVVVDSVA 141 (322)
T ss_dssp TSESEEEEE-CT
T ss_pred ccccEEEEecCc
Confidence 44599999986
No 417
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=93.60 E-value=0.1 Score=49.53 Aligned_cols=24 Identities=25% Similarity=0.264 Sum_probs=20.4
Q ss_pred CcEEEEEEecCCCchHHHHHHhhc
Q 040913 189 GLSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 189 ~~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
..++|.++|++|+||||++..+..
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~ 94 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLAN 94 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH
Confidence 478999999999999998776654
No 418
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=93.56 E-value=1.7 Score=44.65 Aligned_cols=43 Identities=16% Similarity=0.058 Sum_probs=28.7
Q ss_pred ccchhhHHHHHHHHhcCCCCcEEEEEEecCCCchHHHHHHhhcC
Q 040913 170 SEFERAREEWFDLLIEGPIGLSVVAILDSSGFDKTAFAADTYNN 213 (425)
Q Consensus 170 vGr~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLa~~v~~~ 213 (425)
+|.+..- -|..-|.-+-+.-.-|++||+.|+|||||.+.++-+
T Consensus 397 F~y~~~~-~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gd 439 (614)
T KOG0927|consen 397 FGYSDNP-MIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGD 439 (614)
T ss_pred cCCCCcc-hhhhhhhcccCcccceeEecCCCCchhhhHHHHhhc
Confidence 4555444 344444333223356899999999999999998865
No 419
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=93.54 E-value=0.18 Score=53.20 Aligned_cols=24 Identities=21% Similarity=0.162 Sum_probs=20.8
Q ss_pred CcEEEEEEecCCCchHHHHHHhhc
Q 040913 189 GLSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 189 ~~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
.-..++|+|..|.|||||++.+..
T Consensus 365 ~Ge~i~IvG~sGsGKSTLlklL~g 388 (576)
T TIGR02204 365 PGETVALVGPSGAGKSTLFQLLLR 388 (576)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh
Confidence 345789999999999999998875
No 420
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=93.54 E-value=0.057 Score=49.28 Aligned_cols=23 Identities=26% Similarity=0.164 Sum_probs=20.9
Q ss_pred cEEEEEEecCCCchHHHHHHhhc
Q 040913 190 LSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
-.+++|+|+.|+|||||++.+..
T Consensus 30 G~~~~l~G~nGsGKSTLl~~i~G 52 (218)
T cd03255 30 GEFVAIVGPSGSGKSTLLNILGG 52 (218)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhC
Confidence 46899999999999999999876
No 421
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=93.53 E-value=0.055 Score=48.23 Aligned_cols=21 Identities=14% Similarity=0.091 Sum_probs=19.5
Q ss_pred EEEEEecCCCchHHHHHHhhc
Q 040913 192 VVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 192 vi~IvG~gGvGKTtLa~~v~~ 212 (425)
+|.|.|+.|+||||+++.+.+
T Consensus 2 ~I~ieG~~GsGKtT~~~~L~~ 22 (200)
T cd01672 2 FIVFEGIDGAGKTTLIELLAE 22 (200)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999876
No 422
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=93.53 E-value=0.11 Score=45.03 Aligned_cols=37 Identities=22% Similarity=0.261 Sum_probs=29.9
Q ss_pred hhhHHHHHHHHhcCCCCcEEEEEEecCCCchHHHHHHhhcCc
Q 040913 173 ERAREEWFDLLIEGPIGLSVVAILDSSGFDKTAFAADTYNNN 214 (425)
Q Consensus 173 ~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLa~~v~~~~ 214 (425)
....++|.+.|.. +++.++|..|+|||||...+..+.
T Consensus 23 ~~g~~~l~~~l~~-----k~~vl~G~SGvGKSSLiN~L~~~~ 59 (161)
T PF03193_consen 23 GEGIEELKELLKG-----KTSVLLGQSGVGKSSLINALLPEA 59 (161)
T ss_dssp TTTHHHHHHHHTT-----SEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CcCHHHHHHHhcC-----CEEEEECCCCCCHHHHHHHHHhhc
Confidence 3556777777754 578899999999999999999853
No 423
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=93.52 E-value=0.058 Score=46.72 Aligned_cols=21 Identities=38% Similarity=0.485 Sum_probs=19.0
Q ss_pred EEEEecCCCchHHHHHHhhcC
Q 040913 193 VAILDSSGFDKTAFAADTYNN 213 (425)
Q Consensus 193 i~IvG~gGvGKTtLa~~v~~~ 213 (425)
|.|+|.+|+|||||+..+.++
T Consensus 3 i~viG~~~~GKSsl~~~l~~~ 23 (172)
T cd01862 3 VIILGDSGVGKTSLMNQYVNK 23 (172)
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 789999999999999988774
No 424
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=93.51 E-value=0.058 Score=46.41 Aligned_cols=21 Identities=24% Similarity=0.415 Sum_probs=18.8
Q ss_pred EEEEecCCCchHHHHHHhhcC
Q 040913 193 VAILDSSGFDKTAFAADTYNN 213 (425)
Q Consensus 193 i~IvG~gGvGKTtLa~~v~~~ 213 (425)
|.|+|.+|+|||||+..+.+.
T Consensus 3 i~v~G~~~~GKTsli~~~~~~ 23 (164)
T smart00173 3 LVVLGSGGVGKSALTIQFVQG 23 (164)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 679999999999999988764
No 425
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=93.49 E-value=0.13 Score=49.80 Aligned_cols=48 Identities=23% Similarity=0.232 Sum_probs=38.9
Q ss_pred CCCCcccchhhHHH---HHHHHhcCCCCcEEEEEEecCCCchHHHHHHhhc
Q 040913 165 PRLDISEFERAREE---WFDLLIEGPIGLSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 165 ~~~~~vGr~~~~~~---l~~~L~~~~~~~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
....+||..+.++. |++++.++.-.-+.|.|+|++|.|||+||-.+.+
T Consensus 37 ~~dG~VGQ~~AReAaGvIv~mik~gk~aGrgiLi~GppgTGKTAlA~gIa~ 87 (450)
T COG1224 37 IGDGLVGQEEAREAAGVIVKMIKQGKMAGRGILIVGPPGTGKTALAMGIAR 87 (450)
T ss_pred cCCcccchHHHHHhhhHHHHHHHhCcccccEEEEECCCCCcHHHHHHHHHH
Confidence 34568997766554 6788888766678899999999999999999888
No 426
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=93.48 E-value=0.059 Score=48.90 Aligned_cols=23 Identities=17% Similarity=0.124 Sum_probs=20.8
Q ss_pred cEEEEEEecCCCchHHHHHHhhc
Q 040913 190 LSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
-.+++|+|..|.|||||++.+..
T Consensus 27 G~~~~l~G~nGsGKSTLl~~l~G 49 (211)
T cd03225 27 GEFVLIVGPNGSGKSTLLRLLNG 49 (211)
T ss_pred CcEEEEECCCCCCHHHHHHHHhc
Confidence 46899999999999999999875
No 427
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=93.46 E-value=0.11 Score=52.26 Aligned_cols=24 Identities=17% Similarity=0.167 Sum_probs=21.5
Q ss_pred cEEEEEEecCCCchHHHHHHhhcC
Q 040913 190 LSVVAILDSSGFDKTAFAADTYNN 213 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~~ 213 (425)
-..++|+|..|+|||||++.+.+.
T Consensus 155 GQ~igI~G~sGaGKSTLl~~I~g~ 178 (434)
T PRK07196 155 GQRVGLMAGSGVGKSVLLGMITRY 178 (434)
T ss_pred ceEEEEECCCCCCccHHHHHHhcc
Confidence 567999999999999999998874
No 428
>PRK08356 hypothetical protein; Provisional
Probab=93.46 E-value=0.071 Score=47.89 Aligned_cols=22 Identities=18% Similarity=0.064 Sum_probs=19.6
Q ss_pred cEEEEEEecCCCchHHHHHHhh
Q 040913 190 LSVVAILDSSGFDKTAFAADTY 211 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~ 211 (425)
..+|.|.|++|+||||+|+.+-
T Consensus 5 ~~~i~~~G~~gsGK~t~a~~l~ 26 (195)
T PRK08356 5 KMIVGVVGKIAAGKTTVAKFFE 26 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHH
Confidence 3578999999999999999983
No 429
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=93.45 E-value=0.063 Score=45.09 Aligned_cols=23 Identities=13% Similarity=0.264 Sum_probs=20.2
Q ss_pred EEEEEecCCCchHHHHHHhhcCc
Q 040913 192 VVAILDSSGFDKTAFAADTYNNN 214 (425)
Q Consensus 192 vi~IvG~gGvGKTtLa~~v~~~~ 214 (425)
-|+++|.+|+|||||+..+....
T Consensus 3 ki~~~G~~~~GKstl~~~l~~~~ 25 (161)
T TIGR00231 3 KIVIVGDPNVGKSTLLNRLLGNK 25 (161)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999988754
No 430
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=93.45 E-value=0.061 Score=46.21 Aligned_cols=21 Identities=19% Similarity=0.275 Sum_probs=18.9
Q ss_pred EEEEecCCCchHHHHHHhhcC
Q 040913 193 VAILDSSGFDKTAFAADTYNN 213 (425)
Q Consensus 193 i~IvG~gGvGKTtLa~~v~~~ 213 (425)
|.++|.+|+|||||+..+.+.
T Consensus 3 i~~vG~~~vGKTsli~~l~~~ 23 (168)
T cd04119 3 VISMGNSGVGKSCIIKRYCEG 23 (168)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 679999999999999988764
No 431
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=93.44 E-value=0.11 Score=49.38 Aligned_cols=25 Identities=24% Similarity=0.268 Sum_probs=22.8
Q ss_pred CCcEEEEEEecCCCchHHHHHHhhc
Q 040913 188 IGLSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 188 ~~~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
.+..+|.|+|.+|+|||||...+.+
T Consensus 102 ~~~~~v~l~G~pGsGKTTLl~~l~~ 126 (290)
T PRK10463 102 RKQLVLNLVSSPGSGKTTLLTETLM 126 (290)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999988877
No 432
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=93.43 E-value=0.2 Score=52.93 Aligned_cols=24 Identities=13% Similarity=0.109 Sum_probs=21.1
Q ss_pred CcEEEEEEecCCCchHHHHHHhhc
Q 040913 189 GLSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 189 ~~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
.-..++|+|+.|.|||||++.+..
T Consensus 340 ~G~~~~ivG~sGsGKSTLl~ll~g 363 (569)
T PRK10789 340 PGQMLGICGPTGSGKSTLLSLIQR 363 (569)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 356899999999999999998865
No 433
>TIGR01041 ATP_syn_B_arch ATP synthase archaeal, B subunit. Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.
Probab=93.43 E-value=0.093 Score=53.32 Aligned_cols=82 Identities=11% Similarity=0.190 Sum_probs=48.2
Q ss_pred EEEEEEecCCCchHHHHHHhhcCcccccccc--chHHH--------HHHHHHHhCCCCCCC------ccCCC-C-----H
Q 040913 191 SVVAILDSSGFDKTAFAADTYNNNHVKFYFD--CLAWI--------LDDIIRSLMPPSRVT------VIIGE-D-----Y 248 (425)
Q Consensus 191 ~vi~IvG~gGvGKTtLa~~v~~~~~~~~~F~--~~~wv--------~~~il~~l~~~~~~~------~~~~~-~-----~ 248 (425)
.-++|.|..|+|||||+..+.+.......+. .++++ ..+++..+....... ...+. . .
T Consensus 142 QR~gIfgg~G~GKs~L~~~ia~~~~ad~~~~~~v~V~~~iGERgrEv~efi~~~~~~~~l~rtvvv~atsd~p~~~R~~a 221 (458)
T TIGR01041 142 QKLPIFSGSGLPHNELAAQIARQATVRGEESEFAVVFAAMGITYEEANFFMKDFEETGALERAVVFLNLADDPAVERIVT 221 (458)
T ss_pred CEEEeeCCCCCCHHHHHHHHHHhhcccCCCCceEEEEEEccccchHHHHHHHHHHhcCCcceEEEEEECCCCCHHHHHHH
Confidence 4578999999999999999888544331111 22233 556666665433211 00111 1 1
Q ss_pred HHHHHHHHHHhc---CCeEEEEecccC
Q 040913 249 KLKKSILRDFLT---NKKYFIALDDVC 272 (425)
Q Consensus 249 ~~l~~~l~~~l~---~kr~LlVLDdvw 272 (425)
....-.+.++++ ++++||++||+-
T Consensus 222 ~~~a~tiAEyfr~d~G~~VLli~DslT 248 (458)
T TIGR01041 222 PRMALTAAEYLAFEKDMHVLVILTDMT 248 (458)
T ss_pred HHHHHHHHHHHHHccCCcEEEEEcChh
Confidence 122333556665 789999999994
No 434
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=93.42 E-value=0.062 Score=47.92 Aligned_cols=23 Identities=22% Similarity=0.287 Sum_probs=20.8
Q ss_pred cEEEEEEecCCCchHHHHHHhhc
Q 040913 190 LSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
-.+++|+|..|.|||||.+.+..
T Consensus 18 Ge~~~i~G~nGsGKSTLl~~i~G 40 (190)
T TIGR01166 18 GEVLALLGANGAGKSTLLLHLNG 40 (190)
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 45899999999999999999876
No 435
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=93.40 E-value=0.059 Score=46.86 Aligned_cols=24 Identities=17% Similarity=0.101 Sum_probs=21.2
Q ss_pred cEEEEEEecCCCchHHHHHHhhcC
Q 040913 190 LSVVAILDSSGFDKTAFAADTYNN 213 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~~ 213 (425)
..-|+|+|.+|+|||||.+.+.+.
T Consensus 14 ~~~v~i~G~~g~GKStLl~~l~~~ 37 (173)
T cd04155 14 EPRILILGLDNAGKTTILKQLASE 37 (173)
T ss_pred ccEEEEEccCCCCHHHHHHHHhcC
Confidence 455899999999999999999874
No 436
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=93.39 E-value=0.13 Score=50.29 Aligned_cols=47 Identities=30% Similarity=0.332 Sum_probs=34.6
Q ss_pred CCCcccchhhHHH---HHHHHhcCCCCcEEEEEEecCCCchHHHHHHhhc
Q 040913 166 RLDISEFERAREE---WFDLLIEGPIGLSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 166 ~~~~vGr~~~~~~---l~~~L~~~~~~~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
...+||..+.++. +++++..+.-.-+.|.+.|++|.|||+||..+..
T Consensus 23 ~~GlVGQ~~AReAagiiv~mIk~~K~aGr~iLiaGppGtGKTAlA~~ia~ 72 (398)
T PF06068_consen 23 ADGLVGQEKAREAAGIIVDMIKEGKIAGRAILIAGPPGTGKTALAMAIAK 72 (398)
T ss_dssp ETTEES-HHHHHHHHHHHHHHHTT--TT-EEEEEE-TTSSHHHHHHHHHH
T ss_pred cccccChHHHHHHHHHHHHHHhcccccCcEEEEeCCCCCCchHHHHHHHH
Confidence 4579998776655 5788877765567888999999999999999988
No 437
>PRK01184 hypothetical protein; Provisional
Probab=93.39 E-value=0.062 Score=47.63 Aligned_cols=19 Identities=16% Similarity=0.365 Sum_probs=17.0
Q ss_pred EEEEEEecCCCchHHHHHH
Q 040913 191 SVVAILDSSGFDKTAFAAD 209 (425)
Q Consensus 191 ~vi~IvG~gGvGKTtLa~~ 209 (425)
.+|.|+|++|+||||+++.
T Consensus 2 ~~i~l~G~~GsGKsT~a~~ 20 (184)
T PRK01184 2 KIIGVVGMPGSGKGEFSKI 20 (184)
T ss_pred cEEEEECCCCCCHHHHHHH
Confidence 4799999999999999873
No 438
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=93.39 E-value=0.34 Score=42.73 Aligned_cols=23 Identities=30% Similarity=0.280 Sum_probs=20.2
Q ss_pred cEEEEEEecCCCchHHHHHHhhc
Q 040913 190 LSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
-.+++|+|++|.||+||...|.-
T Consensus 25 ge~vAi~GpSGaGKSTLLnLIAG 47 (231)
T COG3840 25 GEIVAILGPSGAGKSTLLNLIAG 47 (231)
T ss_pred CcEEEEECCCCccHHHHHHHHHh
Confidence 45899999999999999988863
No 439
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=93.38 E-value=0.062 Score=48.97 Aligned_cols=23 Identities=22% Similarity=0.235 Sum_probs=20.8
Q ss_pred cEEEEEEecCCCchHHHHHHhhc
Q 040913 190 LSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
-.+++|+|..|.|||||++.+..
T Consensus 29 Ge~~~i~G~nGsGKSTLl~~l~G 51 (216)
T TIGR00960 29 GEMVFLVGHSGAGKSTFLKLILG 51 (216)
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 46899999999999999999876
No 440
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=93.38 E-value=0.17 Score=46.20 Aligned_cols=26 Identities=23% Similarity=0.238 Sum_probs=22.5
Q ss_pred cEEEEEEecCCCchHHHHHHhhcCcc
Q 040913 190 LSVVAILDSSGFDKTAFAADTYNNNH 215 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~~~~ 215 (425)
-.+++++|..|+|||||.+.+..-.+
T Consensus 29 Geiv~llG~NGaGKTTlLkti~Gl~~ 54 (237)
T COG0410 29 GEIVALLGRNGAGKTTLLKTIMGLVR 54 (237)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 46899999999999999999987443
No 441
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=93.37 E-value=0.061 Score=50.23 Aligned_cols=23 Identities=17% Similarity=0.177 Sum_probs=21.3
Q ss_pred cEEEEEEecCCCchHHHHHHhhc
Q 040913 190 LSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
-.+++|+|+.|+|||||.+.+..
T Consensus 28 G~i~~iiGpNG~GKSTLLk~l~g 50 (258)
T COG1120 28 GEITGILGPNGSGKSTLLKCLAG 50 (258)
T ss_pred CcEEEEECCCCCCHHHHHHHHhc
Confidence 57899999999999999999886
No 442
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=93.37 E-value=0.19 Score=48.66 Aligned_cols=46 Identities=7% Similarity=-0.062 Sum_probs=30.7
Q ss_pred CCCCCCCcccchhhHHHHHHHHhcCCCCcEEEEEEecCCCchHHHHHHhhc
Q 040913 162 EGQPRLDISEFERAREEWFDLLIEGPIGLSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 162 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
|..++...+.-+ ....++.++..+ +-|.+.|.+|+||||+|+.+..
T Consensus 41 p~~d~~y~f~~~-~~~~vl~~l~~~----~~ilL~G~pGtGKTtla~~lA~ 86 (327)
T TIGR01650 41 PDIDPAYLFDKA-TTKAICAGFAYD----RRVMVQGYHGTGKSTHIEQIAA 86 (327)
T ss_pred CCCCCCccCCHH-HHHHHHHHHhcC----CcEEEEeCCCChHHHHHHHHHH
Confidence 333333333333 345566666543 3588999999999999999876
No 443
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=93.37 E-value=0.069 Score=45.25 Aligned_cols=24 Identities=21% Similarity=0.313 Sum_probs=20.5
Q ss_pred EEEEEEecCCCchHHHHHHhhcCc
Q 040913 191 SVVAILDSSGFDKTAFAADTYNNN 214 (425)
Q Consensus 191 ~vi~IvG~gGvGKTtLa~~v~~~~ 214 (425)
+-|-++|..|+|||||++.+...+
T Consensus 2 krimliG~~g~GKTTL~q~L~~~~ 25 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNGEE 25 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcCCC
Confidence 347789999999999999998743
No 444
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=93.36 E-value=0.1 Score=52.67 Aligned_cols=24 Identities=21% Similarity=0.203 Sum_probs=21.0
Q ss_pred cEEEEEEecCCCchHHHHHHhhcC
Q 040913 190 LSVVAILDSSGFDKTAFAADTYNN 213 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~~ 213 (425)
-..++|+|..|+|||||++.+...
T Consensus 165 Gqri~I~G~SGsGKTTLL~~Ia~l 188 (450)
T PRK06002 165 GQRIGIFAGSGVGKSTLLAMLARA 188 (450)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 457899999999999999988863
No 445
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.34 E-value=0.066 Score=47.27 Aligned_cols=24 Identities=25% Similarity=0.210 Sum_probs=21.3
Q ss_pred cEEEEEEecCCCchHHHHHHhhcC
Q 040913 190 LSVVAILDSSGFDKTAFAADTYNN 213 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~~ 213 (425)
-.+++|+|..|.|||||++.+...
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~G~ 49 (178)
T cd03229 26 GEIVALLGPSGSGKSTLLRCIAGL 49 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999753
No 446
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=93.34 E-value=0.077 Score=44.85 Aligned_cols=21 Identities=10% Similarity=0.120 Sum_probs=19.4
Q ss_pred EEEEecCCCchHHHHHHhhcC
Q 040913 193 VAILDSSGFDKTAFAADTYNN 213 (425)
Q Consensus 193 i~IvG~gGvGKTtLa~~v~~~ 213 (425)
|+|+|..|+|||||.+.+.+.
T Consensus 2 i~i~G~~~~GKssl~~~l~~~ 22 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGG 22 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccC
Confidence 689999999999999999875
No 447
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=93.32 E-value=0.066 Score=45.93 Aligned_cols=21 Identities=29% Similarity=0.341 Sum_probs=18.8
Q ss_pred EEEEecCCCchHHHHHHhhcC
Q 040913 193 VAILDSSGFDKTAFAADTYNN 213 (425)
Q Consensus 193 i~IvG~gGvGKTtLa~~v~~~ 213 (425)
|.|+|.+|+|||||++.+.+.
T Consensus 3 i~v~G~~~vGKTsli~~l~~~ 23 (161)
T cd04113 3 FIIIGSSGTGKSCLLHRFVEN 23 (161)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 679999999999999998764
No 448
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=93.30 E-value=0.23 Score=49.22 Aligned_cols=23 Identities=22% Similarity=0.284 Sum_probs=20.6
Q ss_pred cEEEEEEecCCCchHHHHHHhhc
Q 040913 190 LSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
-.+++|+|+.|.|||||.+.+..
T Consensus 31 Ge~~~llGpsGsGKSTLLr~iaG 53 (362)
T TIGR03258 31 GELLALIGKSGCGKTTLLRAIAG 53 (362)
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 45899999999999999999875
No 449
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=93.29 E-value=0.27 Score=49.04 Aligned_cols=23 Identities=22% Similarity=0.247 Sum_probs=20.5
Q ss_pred cEEEEEEecCCCchHHHHHHhhc
Q 040913 190 LSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
-.+++|+|+.|.|||||.+.+..
T Consensus 45 Ge~~~llGpsGsGKSTLLr~IaG 67 (377)
T PRK11607 45 GEIFALLGASGCGKSTLLRMLAG 67 (377)
T ss_pred CCEEEEECCCCCcHHHHHHHHhC
Confidence 45899999999999999998874
No 450
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=93.27 E-value=0.069 Score=50.42 Aligned_cols=34 Identities=21% Similarity=0.212 Sum_probs=24.7
Q ss_pred hHHHHHHHHhcCCCCcEEEEEEecCCCchHHHHHHhhc
Q 040913 175 AREEWFDLLIEGPIGLSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 175 ~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
-.+++..++..+ .-|-+.|++|+|||+||+.+.+
T Consensus 10 l~~~~l~~l~~g----~~vLL~G~~GtGKT~lA~~la~ 43 (262)
T TIGR02640 10 VTSRALRYLKSG----YPVHLRGPAGTGKTTLAMHVAR 43 (262)
T ss_pred HHHHHHHHHhcC----CeEEEEcCCCCCHHHHHHHHHH
Confidence 344555555543 2455899999999999999986
No 451
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=93.26 E-value=0.06 Score=47.06 Aligned_cols=21 Identities=14% Similarity=0.197 Sum_probs=19.3
Q ss_pred EEEEEecCCCchHHHHHHhhc
Q 040913 192 VVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 192 vi~IvG~gGvGKTtLa~~v~~ 212 (425)
.|.|+|+.|+||||+|+.+.+
T Consensus 4 ~i~~~G~~GsGKst~~~~la~ 24 (171)
T PRK03731 4 PLFLVGARGCGKTTVGMALAQ 24 (171)
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 578899999999999999987
No 452
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=93.24 E-value=0.068 Score=49.29 Aligned_cols=23 Identities=30% Similarity=0.254 Sum_probs=20.2
Q ss_pred cEEEEEEecCCCchHHHHHHhhc
Q 040913 190 LSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
--.++|+|++|+|||||.+.+..
T Consensus 29 GEfvsilGpSGcGKSTLLriiAG 51 (248)
T COG1116 29 GEFVAILGPSGCGKSTLLRLIAG 51 (248)
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 45899999999999999998863
No 453
>PRK13695 putative NTPase; Provisional
Probab=93.24 E-value=0.062 Score=47.26 Aligned_cols=22 Identities=18% Similarity=0.231 Sum_probs=19.4
Q ss_pred EEEEEecCCCchHHHHHHhhcC
Q 040913 192 VVAILDSSGFDKTAFAADTYNN 213 (425)
Q Consensus 192 vi~IvG~gGvGKTtLa~~v~~~ 213 (425)
-|.|+|.+|+|||||++.+++.
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~ 23 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAEL 23 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3789999999999999998763
No 454
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=93.24 E-value=0.16 Score=46.51 Aligned_cols=21 Identities=10% Similarity=0.154 Sum_probs=19.4
Q ss_pred EEEEEEecCCCchHHHHHHhh
Q 040913 191 SVVAILDSSGFDKTAFAADTY 211 (425)
Q Consensus 191 ~vi~IvG~gGvGKTtLa~~v~ 211 (425)
.++.|.|+.|.||||+.+.+.
T Consensus 31 ~~~~l~Gpn~sGKstllr~i~ 51 (216)
T cd03284 31 QILLITGPNMAGKSTYLRQVA 51 (216)
T ss_pred eEEEEECCCCCChHHHHHHHH
Confidence 788999999999999999874
No 455
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=93.23 E-value=0.076 Score=46.78 Aligned_cols=25 Identities=12% Similarity=0.260 Sum_probs=22.2
Q ss_pred cEEEEEEecCCCchHHHHHHhhcCc
Q 040913 190 LSVVAILDSSGFDKTAFAADTYNNN 214 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~~~ 214 (425)
-.++.|.|++|+|||||++.++++.
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhc
Confidence 4578899999999999999999964
No 456
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=93.23 E-value=0.3 Score=46.55 Aligned_cols=53 Identities=13% Similarity=0.218 Sum_probs=32.6
Q ss_pred HHHHHHhcCCeEEEEecccCC--ChhhHHHHHhhCC--CCCCCcEEEEecCChhHHH
Q 040913 253 SILRDFLTNKKYFIALDDVCH--NIEIWDDLEEVLP--DNQNGSRVLITVINPSLLT 305 (425)
Q Consensus 253 ~~l~~~l~~kr~LlVLDdvw~--~~~~~~~l~~~l~--~~~~gskIivTTR~~~va~ 305 (425)
-.|.+.|....-++..|..-+ +++.=..+...|. +...|-.|++.|...+|.+
T Consensus 150 VaIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~Vvk 206 (339)
T COG1135 150 VAIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEVVK 206 (339)
T ss_pred HHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHHHH
Confidence 356667777777888898752 2233233333333 2344888888888877764
No 457
>PRK14532 adenylate kinase; Provisional
Probab=93.22 E-value=0.062 Score=47.83 Aligned_cols=20 Identities=10% Similarity=0.091 Sum_probs=18.4
Q ss_pred EEEEecCCCchHHHHHHhhc
Q 040913 193 VAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 193 i~IvG~gGvGKTtLa~~v~~ 212 (425)
|.+.|++|+||||+|+.+..
T Consensus 3 i~~~G~pGsGKsT~a~~la~ 22 (188)
T PRK14532 3 LILFGPPAAGKGTQAKRLVE 22 (188)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 67899999999999999987
No 458
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.22 E-value=0.075 Score=48.39 Aligned_cols=22 Identities=23% Similarity=0.271 Sum_probs=20.7
Q ss_pred EEEEEEecCCCchHHHHHHhhc
Q 040913 191 SVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 191 ~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
.+++|+|..|+|||||++.+..
T Consensus 24 e~~~i~G~nGsGKSTLl~~l~G 45 (214)
T cd03297 24 EVTGIFGASGAGKSTLLRCIAG 45 (214)
T ss_pred eeEEEECCCCCCHHHHHHHHhC
Confidence 7999999999999999999876
No 459
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=93.19 E-value=0.15 Score=45.90 Aligned_cols=42 Identities=19% Similarity=0.076 Sum_probs=30.4
Q ss_pred CCcccchhhHHHHHHHHhcCCCCcEEEEEEecCCCchHHHHHHhhc
Q 040913 167 LDISEFERAREEWFDLLIEGPIGLSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 167 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
++++|.+..+..+.=.... ..-+.++|.+|+|||+||+.+-.
T Consensus 3 ~dI~GQe~aKrAL~iAAaG----~h~lLl~GppGtGKTmlA~~l~~ 44 (206)
T PF01078_consen 3 SDIVGQEEAKRALEIAAAG----GHHLLLIGPPGTGKTMLARRLPS 44 (206)
T ss_dssp CCSSSTHHHHHHHHHHHHC----C--EEEES-CCCTHHHHHHHHHH
T ss_pred hhhcCcHHHHHHHHHHHcC----CCCeEEECCCCCCHHHHHHHHHH
Confidence 5688888887777555444 24578999999999999998764
No 460
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=93.19 E-value=0.18 Score=49.47 Aligned_cols=94 Identities=12% Similarity=0.036 Sum_probs=50.5
Q ss_pred HHHHHhcCCCCcEEEEEEecCCCchHHHHHHhhcCcccccc----ccchHHH----------HHHHHHHhCCCCCCC---
Q 040913 179 WFDLLIEGPIGLSVVAILDSSGFDKTAFAADTYNNNHVKFY----FDCLAWI----------LDDIIRSLMPPSRVT--- 241 (425)
Q Consensus 179 l~~~L~~~~~~~~vi~IvG~gGvGKTtLa~~v~~~~~~~~~----F~~~~wv----------~~~il~~l~~~~~~~--- 241 (425)
|-++|..+=..-.++-|.|.+|+|||+|+..++-....... =..++|+ +.+|...+.......
T Consensus 112 LD~lL~GG~~~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl~qia~~~~~~~~~~l~~ 191 (342)
T PLN03186 112 LDKILEGGIETGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRLIQIAERFGLNGADVLEN 191 (342)
T ss_pred HHHhhcCCCcCceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHHHHHHHHcCCChhhhccc
Confidence 33444444345678889999999999999877642221111 1134455 555665554332110
Q ss_pred --ccCCCCHHHHHHHHH---HHh-cCCeEEEEecccC
Q 040913 242 --VIIGEDYKLKKSILR---DFL-TNKKYFIALDDVC 272 (425)
Q Consensus 242 --~~~~~~~~~l~~~l~---~~l-~~kr~LlVLDdvw 272 (425)
.....+.+.+...+. ..+ ..+--|||+|-+-
T Consensus 192 i~~~~~~~~e~~~~ll~~~~~~~~~~~~~LIVIDSI~ 228 (342)
T PLN03186 192 VAYARAYNTDHQSELLLEAASMMAETRFALMIVDSAT 228 (342)
T ss_pred eEEEecCCHHHHHHHHHHHHHHhhccCCCEEEEeCcH
Confidence 111233444433332 223 3456699999885
No 461
>PRK05922 type III secretion system ATPase; Validated
Probab=93.19 E-value=0.1 Score=52.48 Aligned_cols=24 Identities=8% Similarity=0.191 Sum_probs=20.9
Q ss_pred cEEEEEEecCCCchHHHHHHhhcC
Q 040913 190 LSVVAILDSSGFDKTAFAADTYNN 213 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~~ 213 (425)
-..++|+|..|+|||||.+.+.+.
T Consensus 157 GqrigI~G~nG~GKSTLL~~Ia~~ 180 (434)
T PRK05922 157 GQRIGVFSEPGSGKSSLLSTIAKG 180 (434)
T ss_pred CcEEEEECCCCCChHHHHHHHhcc
Confidence 345899999999999999999874
No 462
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=93.19 E-value=0.072 Score=45.65 Aligned_cols=21 Identities=14% Similarity=0.373 Sum_probs=19.0
Q ss_pred EEEEecCCCchHHHHHHhhcC
Q 040913 193 VAILDSSGFDKTAFAADTYNN 213 (425)
Q Consensus 193 i~IvG~gGvGKTtLa~~v~~~ 213 (425)
|.++|.+|+|||||++.+.+.
T Consensus 3 v~v~G~~~~GKTtli~~l~~~ 23 (164)
T smart00175 3 IILIGDSGVGKSSLLSRFTDG 23 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 679999999999999999764
No 463
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=93.18 E-value=0.079 Score=47.21 Aligned_cols=34 Identities=18% Similarity=0.224 Sum_probs=24.9
Q ss_pred HHHHHHHHhcCCCCcEEEEEEecCCCchHHHHHHhhc
Q 040913 176 REEWFDLLIEGPIGLSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 176 ~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
...++...... -..+.|+|..|+|||||++.+..
T Consensus 14 ~~~~l~~~v~~---g~~i~I~G~tGSGKTTll~aL~~ 47 (186)
T cd01130 14 QAAYLWLAVEA---RKNILISGGTGSGKTTLLNALLA 47 (186)
T ss_pred HHHHHHHHHhC---CCEEEEECCCCCCHHHHHHHHHh
Confidence 34444444332 45789999999999999998876
No 464
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=93.18 E-value=0.07 Score=45.52 Aligned_cols=21 Identities=19% Similarity=0.438 Sum_probs=18.7
Q ss_pred EEEEecCCCchHHHHHHhhcC
Q 040913 193 VAILDSSGFDKTAFAADTYNN 213 (425)
Q Consensus 193 i~IvG~gGvGKTtLa~~v~~~ 213 (425)
|.++|.+|+|||||...+.+.
T Consensus 4 i~iiG~~~vGKTsl~~~~~~~ 24 (162)
T cd04138 4 LVVVGAGGVGKSALTIQLIQN 24 (162)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 678999999999999988764
No 465
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.15 E-value=0.072 Score=48.33 Aligned_cols=24 Identities=17% Similarity=0.124 Sum_probs=21.2
Q ss_pred cEEEEEEecCCCchHHHHHHhhcC
Q 040913 190 LSVVAILDSSGFDKTAFAADTYNN 213 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~~ 213 (425)
-.+++|+|..|+|||||++.+...
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~G~ 49 (210)
T cd03269 26 GEIFGLLGPNGAGKTTTIRMILGI 49 (210)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999998753
No 466
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.14 E-value=0.071 Score=49.32 Aligned_cols=23 Identities=22% Similarity=0.244 Sum_probs=20.7
Q ss_pred cEEEEEEecCCCchHHHHHHhhc
Q 040913 190 LSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
-.+++|+|+.|.|||||++.+..
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~l~G 48 (235)
T cd03261 26 GEILAIIGPSGSGKSTLLRLIVG 48 (235)
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 45899999999999999999875
No 467
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=93.12 E-value=0.081 Score=51.39 Aligned_cols=24 Identities=17% Similarity=0.180 Sum_probs=21.0
Q ss_pred CcEEEEEEecCCCchHHHHHHhhc
Q 040913 189 GLSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 189 ~~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
...+|.++|++|+||||++..+..
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~ 136 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAH 136 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH
Confidence 468999999999999998877755
No 468
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=93.12 E-value=0.073 Score=48.41 Aligned_cols=23 Identities=22% Similarity=0.199 Sum_probs=20.7
Q ss_pred cEEEEEEecCCCchHHHHHHhhc
Q 040913 190 LSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
-.+++|+|..|+|||||++.+..
T Consensus 28 G~~~~l~G~nGsGKSTLl~~i~G 50 (214)
T TIGR02673 28 GEFLFLTGPSGAGKTTLLKLLYG 50 (214)
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 45899999999999999999876
No 469
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=93.09 E-value=0.06 Score=47.63 Aligned_cols=21 Identities=14% Similarity=0.188 Sum_probs=19.3
Q ss_pred EEEEEecCCCchHHHHHHhhc
Q 040913 192 VVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 192 vi~IvG~gGvGKTtLa~~v~~ 212 (425)
+|+|.|+.|+||||+++.+.+
T Consensus 1 ii~itG~~gsGKst~~~~l~~ 21 (179)
T cd02022 1 IIGLTGGIGSGKSTVAKLLKE 21 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999876
No 470
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=93.09 E-value=0.065 Score=53.73 Aligned_cols=25 Identities=24% Similarity=0.185 Sum_probs=22.5
Q ss_pred CcEEEEEEecCCCchHHHHHHhhcC
Q 040913 189 GLSVVAILDSSGFDKTAFAADTYNN 213 (425)
Q Consensus 189 ~~~vi~IvG~gGvGKTtLa~~v~~~ 213 (425)
-.+.|+|+|..|+|||||++.+.+.
T Consensus 218 ~~~~IvI~G~~gsGKTTL~~~La~~ 242 (399)
T PRK08099 218 FVRTVAILGGESSGKSTLVNKLANI 242 (399)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 4788999999999999999998873
No 471
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=93.09 E-value=0.12 Score=46.65 Aligned_cols=97 Identities=11% Similarity=0.107 Sum_probs=46.3
Q ss_pred CCcEEEEEEecCCCchHHHHHHhhcCccccccc-----c-chHHH--HHHHHHHhCCCCCCCccCCCCHHHHHHHHHHHh
Q 040913 188 IGLSVVAILDSSGFDKTAFAADTYNNNHVKFYF-----D-CLAWI--LDDIIRSLMPPSRVTVIIGEDYKLKKSILRDFL 259 (425)
Q Consensus 188 ~~~~vi~IvG~gGvGKTtLa~~v~~~~~~~~~F-----~-~~~wv--~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~l 259 (425)
..+.++.+.|.+|.||||++..+..... ...+ | .+... ...+...-..... .........+...+.+..
T Consensus 13 ~~P~~~i~aG~~GsGKSt~~~~~~~~~~-~~~~v~i~~D~~r~~~p~~~~~~~~~~~~~~--~~~~~~a~~~~~~~~~~a 89 (199)
T PF06414_consen 13 EKPTLIIIAGQPGSGKSTLARQLLEEFG-GGGIVVIDADEFRQFHPDYDELLKADPDEAS--ELTQKEASRLAEKLIEYA 89 (199)
T ss_dssp SS-EEEEEES-TTSTTHHHHHHHHHHT--TT-SEEE-GGGGGGGSTTHHHHHHHHCCCTH--HHHHHHHHHHHHHHHHHH
T ss_pred cCCEEEEEeCCCCCCHHHHHHHhhhhcc-CCCeEEEehHHHHHhccchhhhhhhhhhhhH--HHHHHHHHHHHHHHHHHH
Confidence 4688888999999999999998877311 1111 0 00000 2333332111110 111122334555666666
Q ss_pred cCCeEEEEecccCCChhhHHHHHhhCCC
Q 040913 260 TNKKYFIALDDVCHNIEIWDDLEEVLPD 287 (425)
Q Consensus 260 ~~kr~LlVLDdvw~~~~~~~~l~~~l~~ 287 (425)
..+++=||+|..-.+.+....+...+..
T Consensus 90 ~~~~~nii~E~tl~~~~~~~~~~~~~k~ 117 (199)
T PF06414_consen 90 IENRYNIIFEGTLSNPSKLRKLIREAKA 117 (199)
T ss_dssp HHCT--EEEE--TTSSHHHHHHHHHHHC
T ss_pred HHcCCCEEEecCCCChhHHHHHHHHHHc
Confidence 6777888889876234444445555543
No 472
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.09 E-value=0.074 Score=48.35 Aligned_cols=23 Identities=26% Similarity=0.228 Sum_probs=20.6
Q ss_pred cEEEEEEecCCCchHHHHHHhhc
Q 040913 190 LSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
-.+++|+|..|.|||||++.+..
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~l~G 48 (213)
T cd03259 26 GEFLALLGPSGCGKTTLLRLIAG 48 (213)
T ss_pred CcEEEEECCCCCCHHHHHHHHhC
Confidence 46899999999999999998875
No 473
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=93.08 E-value=0.072 Score=49.48 Aligned_cols=23 Identities=26% Similarity=0.236 Sum_probs=20.8
Q ss_pred cEEEEEEecCCCchHHHHHHhhc
Q 040913 190 LSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
-.+++|+|..|+|||||++.+..
T Consensus 28 Ge~~~l~G~nGsGKSTLl~~l~G 50 (243)
T TIGR02315 28 GEFVAIIGPSGAGKSTLLRCINR 50 (243)
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 45899999999999999999875
No 474
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=93.08 E-value=0.95 Score=40.13 Aligned_cols=55 Identities=18% Similarity=0.196 Sum_probs=33.6
Q ss_pred HHHHHHHHHHhcCCeEEEEecccCC--ChhhHHHHHhhCC-CCCCCcEEEEecCChhH
Q 040913 249 KLKKSILRDFLTNKKYFIALDDVCH--NIEIWDDLEEVLP-DNQNGSRVLITVINPSL 303 (425)
Q Consensus 249 ~~l~~~l~~~l~~kr~LlVLDdvw~--~~~~~~~l~~~l~-~~~~gskIivTTR~~~v 303 (425)
++..-.+.+..-.++-|-+||..-. +.+.-..+...+. ....|.-||.||..+..
T Consensus 135 QqRRvAlArL~ls~~pLWiLDEP~taLDk~g~a~l~~l~~~H~~~GGiVllttHq~l~ 192 (209)
T COG4133 135 QQRRVALARLWLSPAPLWILDEPFTALDKEGVALLTALMAAHAAQGGIVLLTTHQPLP 192 (209)
T ss_pred HHHHHHHHHHHcCCCCceeecCcccccCHHHHHHHHHHHHHHhcCCCEEEEecCCccC
Confidence 4444556666678999999999852 1222222322222 34668889999877554
No 475
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=93.08 E-value=1.3 Score=43.03 Aligned_cols=122 Identities=16% Similarity=0.046 Sum_probs=62.2
Q ss_pred hhHHHHHHHHhcCCCCcEEEEEEecCCCchHHHHHHhhcCccccccc-----cchHHHHHHHHHHhC---------CCCC
Q 040913 174 RAREEWFDLLIEGPIGLSVVAILDSSGFDKTAFAADTYNNNHVKFYF-----DCLAWILDDIIRSLM---------PPSR 239 (425)
Q Consensus 174 ~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLa~~v~~~~~~~~~F-----~~~~wv~~~il~~l~---------~~~~ 239 (425)
...+.+...+..+. -...+-+.|+.|+||+++|..+.+.--..... .++-|+ .+-. .+..
T Consensus 11 ~~~~~l~~~~~~~r-l~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~-----~~g~HPD~~~i~~~p~~ 84 (319)
T PRK08769 11 RAYDQTVAALDAGR-LGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLI-----AAGTHPDLQLVSFIPNR 84 (319)
T ss_pred HHHHHHHHHHHcCC-cceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHH-----hcCCCCCEEEEecCCCc
Confidence 34455565555443 35568899999999999997765421111101 111121 0000 0000
Q ss_pred CCc--cCCCCHHHHHHHHHHHh-----cCCeEEEEecccCC-ChhhHHHHHhhCCCCCCCcEEEEecCChh
Q 040913 240 VTV--IIGEDYKLKKSILRDFL-----TNKKYFIALDDVCH-NIEIWDDLEEVLPDNQNGSRVLITVINPS 302 (425)
Q Consensus 240 ~~~--~~~~~~~~l~~~l~~~l-----~~kr~LlVLDdvw~-~~~~~~~l~~~l~~~~~gskIivTTR~~~ 302 (425)
... ......+++. .+.+.+ .+++-++|+|++.. +...-+.+...+-.-..++.+|++|.+.+
T Consensus 85 ~~~k~~~~I~idqIR-~l~~~~~~~p~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~ 154 (319)
T PRK08769 85 TGDKLRTEIVIEQVR-EISQKLALTPQYGIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPA 154 (319)
T ss_pred ccccccccccHHHHH-HHHHHHhhCcccCCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChh
Confidence 000 0011233332 223322 25677999999863 44566666666665555777777766533
No 476
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=93.08 E-value=0.085 Score=44.88 Aligned_cols=21 Identities=24% Similarity=0.409 Sum_probs=18.8
Q ss_pred EEEEecCCCchHHHHHHhhcC
Q 040913 193 VAILDSSGFDKTAFAADTYNN 213 (425)
Q Consensus 193 i~IvG~gGvGKTtLa~~v~~~ 213 (425)
|.|+|++|+|||||...+.+.
T Consensus 2 i~i~G~~~~GKTsli~~l~~~ 22 (160)
T cd00876 2 VVVLGAGGVGKSAITIQFVKG 22 (160)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 689999999999999998764
No 477
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.06 E-value=0.075 Score=48.61 Aligned_cols=24 Identities=21% Similarity=0.158 Sum_probs=21.2
Q ss_pred cEEEEEEecCCCchHHHHHHhhcC
Q 040913 190 LSVVAILDSSGFDKTAFAADTYNN 213 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~~ 213 (425)
-.+++|+|..|+|||||++.+..-
T Consensus 30 G~~~~i~G~nGsGKSTLl~~l~Gl 53 (220)
T cd03293 30 GEFVALVGPSGCGKSTLLRIIAGL 53 (220)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999998763
No 478
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=93.06 E-value=0.081 Score=53.08 Aligned_cols=47 Identities=15% Similarity=0.029 Sum_probs=35.0
Q ss_pred CCCcccchhhHHHHHHHHh-------c---CC--C----CcEEEEEEecCCCchHHHHHHhhc
Q 040913 166 RLDISEFERAREEWFDLLI-------E---GP--I----GLSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 166 ~~~~vGr~~~~~~l~~~L~-------~---~~--~----~~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
+..++|.++.++.+...+. . .. . ..+.|.++|++|+|||+||+.+..
T Consensus 76 ~~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~ 138 (413)
T TIGR00382 76 DEYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLAR 138 (413)
T ss_pred cceecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHH
Confidence 3458899999888865552 1 11 0 135788999999999999999986
No 479
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=93.04 E-value=0.074 Score=47.06 Aligned_cols=102 Identities=15% Similarity=0.107 Sum_probs=53.8
Q ss_pred cEEEEEEecCCCchHHHHHHhhcCcccc-c--cccc--hHHHHHHHHHHhCCCCCCCccCCCCHHHHHHHHHHHhcCCeE
Q 040913 190 LSVVAILDSSGFDKTAFAADTYNNNHVK-F--YFDC--LAWILDDIIRSLMPPSRVTVIIGEDYKLKKSILRDFLTNKKY 264 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~~~~~~-~--~F~~--~~wv~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~kr~ 264 (425)
-.+++|+|..|.|||||.+.+..-.... . .|+. ..++.+ ...-+.-+...-.+...+..+.-
T Consensus 25 Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~q-------------~~~LSgGq~qrv~laral~~~p~ 91 (177)
T cd03222 25 GEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITPVYKPQ-------------YIDLSGGELQRVAIAAALLRNAT 91 (177)
T ss_pred CCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEEEEEEcc-------------cCCCCHHHHHHHHHHHHHhcCCC
Confidence 4589999999999999999988632211 0 1111 001000 00011223334445566667778
Q ss_pred EEEecccCC--ChhhHHHHHhhCCC--CCCCcEEEEecCChhHH
Q 040913 265 FIALDDVCH--NIEIWDDLEEVLPD--NQNGSRVLITVINPSLL 304 (425)
Q Consensus 265 LlVLDdvw~--~~~~~~~l~~~l~~--~~~gskIivTTR~~~va 304 (425)
+++||.--. +...-..+...+.. ...+..||++|.+....
T Consensus 92 lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~ 135 (177)
T cd03222 92 FYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVL 135 (177)
T ss_pred EEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHH
Confidence 999998741 22333333333321 12235677777765543
No 480
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=93.03 E-value=0.074 Score=48.35 Aligned_cols=24 Identities=17% Similarity=0.195 Sum_probs=21.2
Q ss_pred cEEEEEEecCCCchHHHHHHhhcC
Q 040913 190 LSVVAILDSSGFDKTAFAADTYNN 213 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~~ 213 (425)
-.+++|+|..|+|||||++.+...
T Consensus 25 Ge~~~l~G~nGsGKSTLl~~l~G~ 48 (213)
T cd03235 25 GEFLAIVGPNGAGKSTLLKAILGL 48 (213)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCC
Confidence 458999999999999999998763
No 481
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=93.03 E-value=0.078 Score=44.76 Aligned_cols=21 Identities=19% Similarity=0.379 Sum_probs=19.0
Q ss_pred EEEEecCCCchHHHHHHhhcC
Q 040913 193 VAILDSSGFDKTAFAADTYNN 213 (425)
Q Consensus 193 i~IvG~gGvGKTtLa~~v~~~ 213 (425)
|.++|.+|+|||||...+.+.
T Consensus 3 i~~~G~~~~GKStl~~~l~~~ 23 (159)
T cd00154 3 IVLIGDSGVGKTSLLLRFVDG 23 (159)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 678999999999999998775
No 482
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=93.02 E-value=0.083 Score=46.96 Aligned_cols=24 Identities=17% Similarity=0.243 Sum_probs=21.4
Q ss_pred cEEEEEEecCCCchHHHHHHhhcC
Q 040913 190 LSVVAILDSSGFDKTAFAADTYNN 213 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~~ 213 (425)
.+.|.|+|+.|+|||||+..+.+.
T Consensus 2 ~r~ivl~Gpsg~GK~tl~~~L~~~ 25 (184)
T smart00072 2 RRPIVLSGPSGVGKGTLLAELIQE 25 (184)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhc
Confidence 467899999999999999999874
No 483
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=93.02 E-value=0.078 Score=47.56 Aligned_cols=24 Identities=13% Similarity=0.108 Sum_probs=21.1
Q ss_pred cEEEEEEecCCCchHHHHHHhhcC
Q 040913 190 LSVVAILDSSGFDKTAFAADTYNN 213 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~~ 213 (425)
-.+++|+|..|.|||||++.+...
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~l~G~ 49 (195)
T PRK13541 26 SAITYIKGANGCGKSSLLRMIAGI 49 (195)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcC
Confidence 458999999999999999998763
No 484
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.01 E-value=0.076 Score=49.25 Aligned_cols=23 Identities=22% Similarity=0.211 Sum_probs=20.7
Q ss_pred cEEEEEEecCCCchHHHHHHhhc
Q 040913 190 LSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
-.+++|+|..|+|||||++.+..
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~G 49 (241)
T cd03256 27 GEFVALIGPSGAGKSTLLRCLNG 49 (241)
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 45899999999999999999875
No 485
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=93.00 E-value=0.13 Score=45.54 Aligned_cols=24 Identities=13% Similarity=0.065 Sum_probs=20.5
Q ss_pred cEEEEEEecCCCchHHHHHHhhcC
Q 040913 190 LSVVAILDSSGFDKTAFAADTYNN 213 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~~ 213 (425)
...|.|+|.+|+|||||...+.++
T Consensus 19 ~~ki~ilG~~~~GKStLi~~l~~~ 42 (190)
T cd00879 19 EAKILFLGLDNAGKTTLLHMLKDD 42 (190)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 345699999999999999998764
No 486
>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=93.00 E-value=0.25 Score=49.70 Aligned_cols=81 Identities=11% Similarity=0.241 Sum_probs=45.2
Q ss_pred cEEEEEEecCCCchHHHHHHhhcCccccccccchHHH------HHHHHHHhCCCCCCC------ccCCC-C-----HHHH
Q 040913 190 LSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWI------LDDIIRSLMPPSRVT------VIIGE-D-----YKLK 251 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~~~~~~~~F~~~~wv------~~~il~~l~~~~~~~------~~~~~-~-----~~~l 251 (425)
-..++|+|..|+|||||.+.+.+..... ..+.+.+ +.++...+....... ...+. . ....
T Consensus 137 Gq~~~I~G~sG~GKTtLl~~I~~~~~~~--~~vi~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~tsd~~~~~r~~a~~~ 214 (411)
T TIGR03496 137 GQRMGIFAGSGVGKSTLLGMMARYTEAD--VVVVGLIGERGREVKEFIEDILGEEGLARSVVVAATADESPLMRLRAAFY 214 (411)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCCCCC--EEEEEEEecChHHHHHHHHHHhhCCCcceEEEEEECCCCCHHHHHHHHHH
Confidence 4578999999999999999888743221 1111122 455555544332111 00111 1 1112
Q ss_pred HHHHHHHh--cCCeEEEEecccC
Q 040913 252 KSILRDFL--TNKKYFIALDDVC 272 (425)
Q Consensus 252 ~~~l~~~l--~~kr~LlVLDdvw 272 (425)
.-.+.+++ +++++||++||+-
T Consensus 215 a~tiAEyfr~~G~~Vll~~Dslt 237 (411)
T TIGR03496 215 ATAIAEYFRDQGKDVLLLMDSLT 237 (411)
T ss_pred HHHHHHHHHHCCCCEEEEEeChH
Confidence 23344444 5899999999994
No 487
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=92.99 E-value=0.86 Score=44.68 Aligned_cols=44 Identities=18% Similarity=0.205 Sum_probs=30.5
Q ss_pred CCeEEEEecccCC-ChhhHHHHHhhCCCCCCCcEEEEecCC-hhHH
Q 040913 261 NKKYFIALDDVCH-NIEIWDDLEEVLPDNQNGSRVLITVIN-PSLL 304 (425)
Q Consensus 261 ~kr~LlVLDdvw~-~~~~~~~l~~~l~~~~~gskIivTTR~-~~va 304 (425)
+++-++|+|+... +.+..+.+...+-.-.+++.+|++|.+ ..+.
T Consensus 131 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LL 176 (342)
T PRK06964 131 GGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLL 176 (342)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCc
Confidence 4666888999864 567888888888766667766655555 4443
No 488
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.99 E-value=0.07 Score=48.43 Aligned_cols=21 Identities=19% Similarity=0.221 Sum_probs=19.8
Q ss_pred EEEEEecCCCchHHHHHHhhc
Q 040913 192 VVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 192 vi~IvG~gGvGKTtLa~~v~~ 212 (425)
+++|+|..|.|||||++.+..
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~G 47 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILAT 47 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhC
Confidence 899999999999999999885
No 489
>TIGR01039 atpD ATP synthase, F1 beta subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit.
Probab=92.98 E-value=0.15 Score=51.61 Aligned_cols=82 Identities=11% Similarity=0.175 Sum_probs=46.9
Q ss_pred cEEEEEEecCCCchHHHHHHhhcCccccccccchHHH--------HHHHHHHhCCCCCCC------ccCCCC-H-----H
Q 040913 190 LSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWI--------LDDIIRSLMPPSRVT------VIIGED-Y-----K 249 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~~~~~~~~F~~~~wv--------~~~il~~l~~~~~~~------~~~~~~-~-----~ 249 (425)
-.-++|.|.+|+|||||+..+..+... ++=...+++ ..+++.++....... ...+.. . .
T Consensus 143 GQr~~If~~~G~GKt~L~~~~~~~~~~-~~~~v~V~alIGER~rEv~ef~~~~~~~~~l~rtvvV~atsd~p~~~R~~a~ 221 (461)
T TIGR01039 143 GGKIGLFGGAGVGKTVLIQELINNIAK-EHGGYSVFAGVGERTREGNDLYHEMKESGVIDKTALVYGQMNEPPGARMRVA 221 (461)
T ss_pred CCEEEeecCCCCChHHHHHHHHHHHHh-cCCCeEEEEEecCCchHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHH
Confidence 345899999999999999987653211 111123333 556666664332111 011111 1 1
Q ss_pred HHHHHHHHHh---cCCeEEEEecccC
Q 040913 250 LKKSILRDFL---TNKKYFIALDDVC 272 (425)
Q Consensus 250 ~l~~~l~~~l---~~kr~LlVLDdvw 272 (425)
...-.+.+++ +++++||++||+-
T Consensus 222 ~~a~tiAEyfrd~~G~~VLll~DslT 247 (461)
T TIGR01039 222 LTGLTMAEYFRDEQGQDVLLFIDNIF 247 (461)
T ss_pred HHHHHHHHHHHHhcCCeeEEEecchh
Confidence 2334556666 4689999999994
No 490
>PRK15453 phosphoribulokinase; Provisional
Probab=92.98 E-value=0.082 Score=50.00 Aligned_cols=24 Identities=21% Similarity=0.205 Sum_probs=21.2
Q ss_pred CcEEEEEEecCCCchHHHHHHhhc
Q 040913 189 GLSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 189 ~~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
...+|+|.|.+|+||||+|+.+.+
T Consensus 4 k~piI~ItG~SGsGKTTva~~l~~ 27 (290)
T PRK15453 4 KHPIIAVTGSSGAGTTTVKRAFEK 27 (290)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999997764
No 491
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=92.97 E-value=0.081 Score=46.06 Aligned_cols=23 Identities=26% Similarity=0.221 Sum_probs=20.3
Q ss_pred cEEEEEEecCCCchHHHHHHhhc
Q 040913 190 LSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
--|++|||..|+|||||...+..
T Consensus 32 GeVLgiVGESGSGKtTLL~~is~ 54 (258)
T COG4107 32 GEVLGIVGESGSGKTTLLKCISG 54 (258)
T ss_pred CcEEEEEecCCCcHHhHHHHHhc
Confidence 45899999999999999988765
No 492
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=92.97 E-value=0.063 Score=51.01 Aligned_cols=21 Identities=19% Similarity=0.401 Sum_probs=19.3
Q ss_pred EEEEEecCCCchHHHHHHhhc
Q 040913 192 VVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 192 vi~IvG~gGvGKTtLa~~v~~ 212 (425)
+|+|.|..|+|||||++.+..
T Consensus 1 iigI~G~sGsGKSTl~~~L~~ 21 (273)
T cd02026 1 IIGVAGDSGCGKSTFLRRLTS 21 (273)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999875
No 493
>PRK06761 hypothetical protein; Provisional
Probab=92.96 E-value=0.075 Score=50.50 Aligned_cols=23 Identities=22% Similarity=0.238 Sum_probs=21.0
Q ss_pred EEEEEEecCCCchHHHHHHhhcC
Q 040913 191 SVVAILDSSGFDKTAFAADTYNN 213 (425)
Q Consensus 191 ~vi~IvG~gGvGKTtLa~~v~~~ 213 (425)
++|.|.|++|+||||+++.+.+.
T Consensus 4 ~lIvI~G~~GsGKTTla~~L~~~ 26 (282)
T PRK06761 4 KLIIIEGLPGFGKSTTAKMLNDI 26 (282)
T ss_pred cEEEEECCCCCCHHHHHHHHHHh
Confidence 57899999999999999999984
No 494
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=92.96 E-value=0.079 Score=48.13 Aligned_cols=24 Identities=21% Similarity=0.270 Sum_probs=21.2
Q ss_pred cEEEEEEecCCCchHHHHHHhhcC
Q 040913 190 LSVVAILDSSGFDKTAFAADTYNN 213 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~~ 213 (425)
-.+++|+|..|+|||||.+.+..-
T Consensus 27 G~~~~i~G~nGsGKSTLl~~l~G~ 50 (214)
T cd03292 27 GEFVFLVGPSGAGKSTLLKLIYKE 50 (214)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 458999999999999999998763
No 495
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=92.95 E-value=0.081 Score=45.65 Aligned_cols=21 Identities=14% Similarity=0.264 Sum_probs=18.1
Q ss_pred EEEEecCCCchHHHHHHhhcC
Q 040913 193 VAILDSSGFDKTAFAADTYNN 213 (425)
Q Consensus 193 i~IvG~gGvGKTtLa~~v~~~ 213 (425)
|.++|.+|+|||||++.+.+.
T Consensus 3 i~vvG~~~vGKTsli~~~~~~ 23 (161)
T cd04124 3 IILLGDSAVGKSKLVERFLMD 23 (161)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 678999999999999887653
No 496
>PRK13768 GTPase; Provisional
Probab=92.94 E-value=0.081 Score=49.68 Aligned_cols=22 Identities=23% Similarity=0.330 Sum_probs=18.4
Q ss_pred cEEEEEEecCCCchHHHHHHhh
Q 040913 190 LSVVAILDSSGFDKTAFAADTY 211 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~ 211 (425)
..++.|.|.+|+||||++..+.
T Consensus 2 ~~~i~v~G~~G~GKTt~~~~~~ 23 (253)
T PRK13768 2 MYIVFFLGTAGSGKTTLTKALS 23 (253)
T ss_pred cEEEEEECCCCccHHHHHHHHH
Confidence 3578899999999999886654
No 497
>PRK06820 type III secretion system ATPase; Validated
Probab=92.94 E-value=0.23 Score=50.26 Aligned_cols=24 Identities=13% Similarity=0.221 Sum_probs=20.9
Q ss_pred cEEEEEEecCCCchHHHHHHhhcC
Q 040913 190 LSVVAILDSSGFDKTAFAADTYNN 213 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~~ 213 (425)
-..++|+|..|+|||||++.+...
T Consensus 163 Gqri~I~G~sG~GKStLl~~I~~~ 186 (440)
T PRK06820 163 GQRIGIFAAAGVGKSTLLGMLCAD 186 (440)
T ss_pred CCEEEEECCCCCChHHHHHHHhcc
Confidence 347899999999999999998874
No 498
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=92.92 E-value=0.08 Score=45.70 Aligned_cols=23 Identities=13% Similarity=0.143 Sum_probs=19.5
Q ss_pred EEEEEEecCCCchHHHHHHhhcC
Q 040913 191 SVVAILDSSGFDKTAFAADTYNN 213 (425)
Q Consensus 191 ~vi~IvG~gGvGKTtLa~~v~~~ 213 (425)
.-|.|+|.+|+|||||+..+..+
T Consensus 4 ~kv~vvG~~~~GKTsli~~l~~~ 26 (165)
T cd01864 4 FKIILIGDSNVGKTCVVQRFKSG 26 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhhC
Confidence 45789999999999999987653
No 499
>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase.
Probab=92.91 E-value=0.27 Score=49.62 Aligned_cols=24 Identities=13% Similarity=0.181 Sum_probs=21.1
Q ss_pred cEEEEEEecCCCchHHHHHHhhcC
Q 040913 190 LSVVAILDSSGFDKTAFAADTYNN 213 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~~ 213 (425)
-..++|.|..|+|||||.+.+.+.
T Consensus 145 Gq~~~I~G~sG~GKStLl~~I~~~ 168 (422)
T TIGR02546 145 GQRIGIFAGAGVGKSTLLGMIARG 168 (422)
T ss_pred CCEEEEECCCCCChHHHHHHHhCC
Confidence 456799999999999999998874
No 500
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=92.91 E-value=0.087 Score=45.19 Aligned_cols=21 Identities=24% Similarity=0.434 Sum_probs=18.9
Q ss_pred EEEEecCCCchHHHHHHhhcC
Q 040913 193 VAILDSSGFDKTAFAADTYNN 213 (425)
Q Consensus 193 i~IvG~gGvGKTtLa~~v~~~ 213 (425)
|.++|.+|+|||||...+.+.
T Consensus 2 i~vvG~~~vGKtsl~~~~~~~ 22 (162)
T PF00071_consen 2 IVVVGDSGVGKTSLINRLING 22 (162)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHhh
Confidence 679999999999999988774
Done!