Query 040913
Match_columns 425
No_of_seqs 292 out of 2546
Neff 8.7
Searched_HMMs 29240
Date Mon Mar 25 21:14:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040913.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040913hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 1.6E-39 5.5E-44 337.4 13.7 236 170-425 131-444 (549)
2 3sfz_A APAF-1, apoptotic pepti 100.0 1.1E-33 3.8E-38 318.9 14.0 246 161-425 118-425 (1249)
3 1vt4_I APAF-1 related killer D 100.0 8E-33 2.7E-37 294.8 12.0 228 168-425 129-418 (1221)
4 1z6t_A APAF-1, apoptotic prote 100.0 1.9E-29 6.4E-34 264.1 13.7 243 164-425 121-425 (591)
5 3qfl_A MLA10; coiled-coil, (CC 99.4 7.8E-14 2.7E-18 113.3 6.2 74 33-107 4-85 (115)
6 1w5s_A Origin recognition comp 98.9 1.6E-09 5.4E-14 107.4 7.5 133 165-302 20-190 (412)
7 2qby_B CDC6 homolog 3, cell di 98.7 1.9E-08 6.7E-13 98.6 8.3 132 167-302 20-175 (384)
8 2qby_A CDC6 homolog 1, cell di 98.7 2.8E-08 9.6E-13 97.1 8.7 136 165-303 18-175 (386)
9 1fnn_A CDC6P, cell division co 98.7 1E-07 3.5E-12 93.4 11.4 135 166-303 16-171 (389)
10 1njg_A DNA polymerase III subu 98.7 4.4E-08 1.5E-12 88.8 8.1 132 167-302 23-167 (250)
11 2qen_A Walker-type ATPase; unk 98.6 6.5E-08 2.2E-12 93.3 9.4 135 162-303 7-176 (350)
12 2v1u_A Cell division control p 98.6 5.8E-08 2E-12 95.0 8.3 132 166-301 18-177 (387)
13 2chg_A Replication factor C sm 98.6 1.3E-07 4.6E-12 84.5 9.2 121 166-302 16-143 (226)
14 2fna_A Conserved hypothetical 98.5 1.1E-07 3.8E-12 91.8 6.8 45 163-213 9-53 (357)
15 1sxj_B Activator 1 37 kDa subu 98.3 1E-06 3.6E-11 83.8 8.8 118 167-301 21-147 (323)
16 1iqp_A RFCS; clamp loader, ext 98.2 1.7E-06 5.7E-11 82.6 7.7 121 166-302 24-151 (327)
17 1jbk_A CLPB protein; beta barr 98.2 5.5E-06 1.9E-10 71.9 8.9 46 166-213 21-66 (195)
18 1jr3_A DNA polymerase III subu 98.0 4E-05 1.4E-09 74.4 12.2 132 167-301 16-159 (373)
19 3h4m_A Proteasome-activating n 98.0 1.2E-05 4.1E-10 75.3 7.5 50 163-212 13-73 (285)
20 3u61_B DNA polymerase accessor 97.9 1.9E-05 6.6E-10 75.4 8.4 116 166-302 25-147 (324)
21 2chq_A Replication factor C sm 97.9 1.7E-05 6E-10 75.1 6.5 123 167-302 17-143 (319)
22 2qz4_A Paraplegin; AAA+, SPG7, 97.8 7.3E-05 2.5E-09 68.7 9.6 48 165-212 4-61 (262)
23 3n70_A Transport activator; si 97.8 8.6E-06 2.9E-10 68.4 2.8 110 168-300 2-115 (145)
24 3te6_A Regulatory protein SIR3 97.8 4.9E-05 1.7E-09 72.4 7.7 102 168-272 21-142 (318)
25 3eie_A Vacuolar protein sortin 97.7 0.00016 5.6E-09 69.0 10.9 55 164-220 15-79 (322)
26 1hqc_A RUVB; extended AAA-ATPa 97.7 2E-05 6.7E-10 75.1 4.4 47 166-212 11-60 (324)
27 3co5_A Putative two-component 97.7 4.7E-05 1.6E-09 63.7 5.4 47 167-213 4-50 (143)
28 1d2n_A N-ethylmaleimide-sensit 97.7 0.00025 8.5E-09 65.8 10.9 46 167-212 33-86 (272)
29 3cf0_A Transitional endoplasmi 97.7 0.00012 4E-09 69.3 8.7 96 164-272 12-118 (301)
30 1sxj_D Activator 1 41 kDa subu 97.6 0.00013 4.5E-09 70.1 9.2 46 166-213 36-81 (353)
31 1xwi_A SKD1 protein; VPS4B, AA 97.6 0.00047 1.6E-08 65.9 12.5 49 164-212 9-67 (322)
32 3pvs_A Replication-associated 97.6 0.00015 5.3E-09 72.4 9.3 114 166-302 25-146 (447)
33 3ec2_A DNA replication protein 97.5 8.6E-05 2.9E-09 64.4 5.5 42 172-213 19-61 (180)
34 1sxj_E Activator 1 40 kDa subu 97.5 0.00019 6.5E-09 69.1 8.5 44 167-212 14-58 (354)
35 3pfi_A Holliday junction ATP-d 97.5 0.0001 3.4E-09 70.8 6.0 47 166-212 28-77 (338)
36 3syl_A Protein CBBX; photosynt 97.5 0.00034 1.2E-08 66.0 9.5 45 168-212 32-89 (309)
37 2z4s_A Chromosomal replication 97.5 9.8E-05 3.4E-09 73.8 6.0 117 168-300 106-236 (440)
38 3uk6_A RUVB-like 2; hexameric 97.5 0.00047 1.6E-08 66.8 10.7 48 166-213 43-93 (368)
39 3d8b_A Fidgetin-like protein 1 97.5 0.00018 6.2E-09 69.8 7.4 48 165-212 82-139 (357)
40 3vfd_A Spastin; ATPase, microt 97.5 0.00051 1.8E-08 67.3 10.8 49 164-212 112-170 (389)
41 2p65_A Hypothetical protein PF 97.5 7.8E-05 2.7E-09 64.3 4.1 44 167-212 22-65 (187)
42 2w58_A DNAI, primosome compone 97.4 9.2E-05 3.1E-09 65.4 4.1 39 175-213 37-77 (202)
43 1l8q_A Chromosomal replication 97.4 0.00022 7.6E-09 68.0 6.9 37 176-212 23-59 (324)
44 2qp9_X Vacuolar protein sortin 97.4 0.00062 2.1E-08 65.9 10.0 96 164-272 48-153 (355)
45 2zan_A Vacuolar protein sortin 97.3 0.00065 2.2E-08 67.9 9.8 50 163-212 130-189 (444)
46 2bjv_A PSP operon transcriptio 97.3 0.00013 4.4E-09 67.5 4.2 47 167-213 6-52 (265)
47 3b9p_A CG5977-PA, isoform A; A 97.3 0.00044 1.5E-08 64.9 7.3 48 165-212 19-76 (297)
48 2r62_A Cell division protease 97.3 0.0002 7E-09 66.2 4.8 49 164-212 8-66 (268)
49 1sxj_C Activator 1 40 kDa subu 97.2 0.0011 3.8E-08 63.5 9.4 118 167-301 25-150 (340)
50 3hu3_A Transitional endoplasmi 97.2 0.0011 3.8E-08 66.9 9.7 93 166-271 203-306 (489)
51 1lv7_A FTSH; alpha/beta domain 97.1 0.0013 4.5E-08 60.3 8.8 96 164-272 9-114 (257)
52 4fcw_A Chaperone protein CLPB; 97.1 0.00057 1.9E-08 64.4 5.7 45 168-212 18-69 (311)
53 2ce7_A Cell division protein F 97.0 0.0014 4.9E-08 65.8 8.5 96 164-272 13-118 (476)
54 3pxi_A Negative regulator of g 97.0 0.0012 4.2E-08 70.5 8.1 45 166-212 179-223 (758)
55 3t15_A Ribulose bisphosphate c 97.0 0.0011 3.8E-08 62.3 6.9 24 189-212 35-58 (293)
56 1r6b_X CLPA protein; AAA+, N-t 96.9 0.0037 1.3E-07 66.7 11.0 44 167-212 186-229 (758)
57 4gp7_A Metallophosphoesterase; 96.8 0.0023 7.8E-08 54.9 6.5 22 190-211 9-30 (171)
58 2gno_A DNA polymerase III, gam 96.7 0.0079 2.7E-07 56.8 10.7 115 171-301 1-122 (305)
59 3pxg_A Negative regulator of g 96.7 0.0012 4.1E-08 66.4 5.0 44 167-212 180-223 (468)
60 1a5t_A Delta prime, HOLB; zinc 96.7 0.0097 3.3E-07 56.8 10.9 125 173-301 8-148 (334)
61 4b4t_L 26S protease subunit RP 96.6 0.0037 1.3E-07 61.9 7.4 98 162-272 176-284 (437)
62 4b4t_K 26S protease regulatory 96.6 0.0033 1.1E-07 62.1 6.9 98 162-272 167-275 (428)
63 2dhr_A FTSH; AAA+ protein, hex 96.5 0.0075 2.6E-07 60.9 9.1 52 162-213 26-87 (499)
64 4b4t_J 26S protease regulatory 96.5 0.0029 9.8E-08 61.9 5.8 98 162-272 143-251 (405)
65 3c8u_A Fructokinase; YP_612366 96.5 0.0023 7.9E-08 56.7 4.6 38 175-212 7-44 (208)
66 4b4t_H 26S protease regulatory 96.4 0.0041 1.4E-07 61.7 6.6 97 163-272 205-312 (467)
67 4b4t_M 26S protease regulatory 96.4 0.0036 1.2E-07 62.0 5.8 58 161-220 175-243 (434)
68 3cf2_A TER ATPase, transitiona 96.3 0.011 3.9E-07 62.9 9.3 98 162-272 199-307 (806)
69 1ypw_A Transitional endoplasmi 96.3 0.0016 5.5E-08 69.9 2.8 96 164-272 201-307 (806)
70 1rz3_A Hypothetical protein rb 96.3 0.0046 1.6E-07 54.4 5.4 41 172-212 3-44 (201)
71 2qgz_A Helicase loader, putati 96.2 0.0018 6.1E-08 61.4 2.8 40 174-213 135-175 (308)
72 1sxj_A Activator 1 95 kDa subu 96.2 0.0038 1.3E-07 63.6 5.2 48 166-213 38-100 (516)
73 3bos_A Putative DNA replicatio 96.2 0.0055 1.9E-07 54.9 5.8 44 167-212 28-74 (242)
74 3pxi_A Negative regulator of g 96.2 0.0057 2E-07 65.2 6.8 46 167-212 491-543 (758)
75 1ofh_A ATP-dependent HSL prote 96.2 0.0023 7.8E-08 60.0 3.2 46 167-212 15-72 (310)
76 1in4_A RUVB, holliday junction 96.1 0.0028 9.6E-08 60.7 3.5 46 167-212 25-73 (334)
77 2vhj_A Ntpase P4, P4; non- hyd 96.1 0.0055 1.9E-07 58.0 5.1 69 190-272 123-192 (331)
78 1ojl_A Transcriptional regulat 96.1 0.0032 1.1E-07 59.5 3.5 47 167-213 2-48 (304)
79 4b4t_I 26S protease regulatory 96.0 0.0091 3.1E-07 58.7 6.5 58 161-220 176-244 (437)
80 1qvr_A CLPB protein; coiled co 96.0 0.0038 1.3E-07 67.6 4.1 45 166-212 169-213 (854)
81 1qvr_A CLPB protein; coiled co 95.9 0.0074 2.5E-07 65.3 6.1 45 168-212 559-610 (854)
82 1odf_A YGR205W, hypothetical 3 95.9 0.0075 2.6E-07 56.5 5.4 26 187-212 28-53 (290)
83 3lw7_A Adenylate kinase relate 95.9 0.0038 1.3E-07 52.9 3.0 20 191-210 2-21 (179)
84 3hws_A ATP-dependent CLP prote 95.9 0.006 2E-07 59.0 4.5 44 169-212 17-73 (363)
85 1zp6_A Hypothetical protein AT 95.8 0.0058 2E-07 53.0 3.7 24 190-213 9-32 (191)
86 3nbx_X ATPase RAVA; AAA+ ATPas 95.7 0.02 6.9E-07 57.8 7.8 42 168-213 23-64 (500)
87 2c9o_A RUVB-like 1; hexameric 95.7 0.0095 3.3E-07 59.5 5.4 48 166-213 36-86 (456)
88 1qhx_A CPT, protein (chloramph 95.7 0.005 1.7E-07 52.7 2.8 22 191-212 4-25 (178)
89 1ixz_A ATP-dependent metallopr 95.7 0.0079 2.7E-07 54.9 4.2 49 164-213 13-72 (254)
90 1ly1_A Polynucleotide kinase; 95.6 0.0062 2.1E-07 52.1 3.2 22 191-212 3-24 (181)
91 2x8a_A Nuclear valosin-contain 95.6 0.0075 2.6E-07 56.0 3.9 48 164-212 7-66 (274)
92 3kb2_A SPBC2 prophage-derived 95.6 0.0055 1.9E-07 52.0 2.7 22 191-212 2-23 (173)
93 1kgd_A CASK, peripheral plasma 95.6 0.0057 2E-07 52.8 2.7 23 190-212 5-27 (180)
94 3jvv_A Twitching mobility prot 95.5 0.0023 7.9E-08 61.8 0.2 110 190-306 123-236 (356)
95 2kjq_A DNAA-related protein; s 95.5 0.0057 1.9E-07 51.3 2.5 23 190-212 36-58 (149)
96 3vaa_A Shikimate kinase, SK; s 95.5 0.0065 2.2E-07 53.3 2.9 23 190-212 25-47 (199)
97 1knq_A Gluconate kinase; ALFA/ 95.5 0.0094 3.2E-07 50.9 3.8 24 189-212 7-30 (175)
98 3uie_A Adenylyl-sulfate kinase 95.4 0.0086 2.9E-07 52.6 3.4 23 190-212 25-47 (200)
99 1kag_A SKI, shikimate kinase I 95.4 0.0061 2.1E-07 51.9 2.4 22 191-212 5-26 (173)
100 1iy2_A ATP-dependent metallopr 95.4 0.0099 3.4E-07 55.1 4.0 50 163-213 36-96 (278)
101 3asz_A Uridine kinase; cytidin 95.3 0.01 3.4E-07 52.4 3.6 24 189-212 5-28 (211)
102 3tr0_A Guanylate kinase, GMP k 95.3 0.0087 3E-07 52.4 3.1 23 190-212 7-29 (205)
103 1nks_A Adenylate kinase; therm 95.3 0.0094 3.2E-07 51.4 3.3 22 191-212 2-23 (194)
104 2r44_A Uncharacterized protein 95.3 0.0098 3.4E-07 56.5 3.6 42 167-212 27-68 (331)
105 2rhm_A Putative kinase; P-loop 95.3 0.011 3.7E-07 51.2 3.5 23 190-212 5-27 (193)
106 3trf_A Shikimate kinase, SK; a 95.2 0.0079 2.7E-07 51.8 2.6 23 190-212 5-27 (185)
107 3tui_C Methionine import ATP-b 95.2 0.03 1E-06 54.0 6.8 23 190-212 54-76 (366)
108 3hr8_A Protein RECA; alpha and 95.2 0.013 4.6E-07 56.4 4.3 82 189-272 60-149 (356)
109 2qt1_A Nicotinamide riboside k 95.2 0.012 4.3E-07 51.7 3.8 25 189-213 20-44 (207)
110 2bdt_A BH3686; alpha-beta prot 95.2 0.011 3.8E-07 51.2 3.3 22 191-212 3-24 (189)
111 1um8_A ATP-dependent CLP prote 95.2 0.016 5.4E-07 56.2 4.7 45 168-212 22-94 (376)
112 4eun_A Thermoresistant glucoki 95.1 0.0097 3.3E-07 52.2 2.9 23 190-212 29-51 (200)
113 1uf9_A TT1252 protein; P-loop, 95.1 0.013 4.4E-07 51.1 3.6 25 189-213 7-31 (203)
114 1gvn_B Zeta; postsegregational 95.1 0.022 7.6E-07 53.1 5.4 38 175-212 15-55 (287)
115 3tau_A Guanylate kinase, GMP k 95.1 0.011 3.8E-07 52.3 3.0 24 190-213 8-31 (208)
116 1cke_A CK, MSSA, protein (cyti 95.1 0.011 3.6E-07 52.8 2.9 22 191-212 6-27 (227)
117 2j41_A Guanylate kinase; GMP, 95.0 0.011 3.8E-07 51.8 2.9 23 190-212 6-28 (207)
118 2hf9_A Probable hydrogenase ni 95.0 0.022 7.7E-07 50.5 5.1 36 176-213 26-61 (226)
119 2if2_A Dephospho-COA kinase; a 95.0 0.012 4E-07 51.7 3.0 22 191-212 2-23 (204)
120 2jaq_A Deoxyguanosine kinase; 95.0 0.011 3.8E-07 51.5 2.9 21 192-212 2-22 (205)
121 3t61_A Gluconokinase; PSI-biol 95.0 0.0092 3.2E-07 52.3 2.4 23 190-212 18-40 (202)
122 3tqc_A Pantothenate kinase; bi 95.0 0.022 7.4E-07 54.1 5.0 39 174-212 74-114 (321)
123 2b8t_A Thymidine kinase; deoxy 95.0 0.011 3.7E-07 53.1 2.8 108 190-302 12-127 (223)
124 1kht_A Adenylate kinase; phosp 95.0 0.011 3.9E-07 50.9 2.9 22 191-212 4-25 (192)
125 1tev_A UMP-CMP kinase; ploop, 95.0 0.013 4.4E-07 50.6 3.2 23 190-212 3-25 (196)
126 1ye8_A Protein THEP1, hypothet 95.0 0.013 4.3E-07 50.7 3.1 22 192-213 2-23 (178)
127 3a00_A Guanylate kinase, GMP k 95.0 0.0093 3.2E-07 51.7 2.2 22 191-212 2-23 (186)
128 1jjv_A Dephospho-COA kinase; P 95.0 0.014 4.7E-07 51.3 3.4 22 191-212 3-24 (206)
129 2ga8_A Hypothetical 39.9 kDa p 95.0 0.024 8.1E-07 54.4 5.2 43 170-212 2-46 (359)
130 1g8p_A Magnesium-chelatase 38 95.0 0.013 4.4E-07 55.9 3.4 45 166-212 23-67 (350)
131 2p5t_B PEZT; postsegregational 94.9 0.019 6.6E-07 52.4 4.3 40 173-212 12-54 (253)
132 2ze6_A Isopentenyl transferase 94.9 0.013 4.5E-07 53.6 3.2 22 191-212 2-23 (253)
133 2qor_A Guanylate kinase; phosp 94.9 0.01 3.5E-07 52.2 2.3 24 189-212 11-34 (204)
134 3tlx_A Adenylate kinase 2; str 94.9 0.021 7.1E-07 51.9 4.4 37 176-212 15-51 (243)
135 1lvg_A Guanylate kinase, GMP k 94.9 0.01 3.6E-07 52.0 2.3 23 190-212 4-26 (198)
136 3iij_A Coilin-interacting nucl 94.9 0.011 3.7E-07 50.8 2.3 23 190-212 11-33 (180)
137 2c95_A Adenylate kinase 1; tra 94.9 0.014 4.9E-07 50.5 3.1 23 190-212 9-31 (196)
138 1uj2_A Uridine-cytidine kinase 94.8 0.015 5.1E-07 53.1 3.3 24 189-212 21-44 (252)
139 2wsm_A Hydrogenase expression/ 94.8 0.019 6.6E-07 50.8 4.0 41 171-213 13-53 (221)
140 1via_A Shikimate kinase; struc 94.8 0.011 3.6E-07 50.6 2.2 21 192-212 6-26 (175)
141 3aez_A Pantothenate kinase; tr 94.8 0.016 5.6E-07 54.8 3.6 25 188-212 88-112 (312)
142 1ukz_A Uridylate kinase; trans 94.8 0.017 5.7E-07 50.6 3.5 24 189-212 14-37 (203)
143 3cm0_A Adenylate kinase; ATP-b 94.7 0.016 5.6E-07 49.8 3.2 23 190-212 4-26 (186)
144 1znw_A Guanylate kinase, GMP k 94.7 0.016 5.4E-07 51.1 3.1 23 190-212 20-42 (207)
145 2bbw_A Adenylate kinase 4, AK4 94.7 0.016 5.3E-07 52.7 3.1 23 190-212 27-49 (246)
146 1ex7_A Guanylate kinase; subst 94.7 0.01 3.5E-07 51.7 1.7 22 191-212 2-23 (186)
147 2yvu_A Probable adenylyl-sulfa 94.7 0.017 5.8E-07 49.8 3.2 24 189-212 12-35 (186)
148 1y63_A LMAJ004144AAA protein; 94.7 0.017 5.7E-07 50.0 3.1 23 190-212 10-32 (184)
149 2jeo_A Uridine-cytidine kinase 94.7 0.019 6.7E-07 52.0 3.6 24 189-212 24-47 (245)
150 2plr_A DTMP kinase, probable t 94.7 0.018 6.2E-07 50.5 3.3 23 190-212 4-26 (213)
151 1qf9_A UMP/CMP kinase, protein 94.7 0.018 6.2E-07 49.6 3.3 23 190-212 6-28 (194)
152 1zuh_A Shikimate kinase; alpha 94.6 0.016 5.6E-07 49.0 2.9 23 190-212 7-29 (168)
153 3a4m_A L-seryl-tRNA(SEC) kinas 94.6 0.018 6.1E-07 52.9 3.3 23 190-212 4-26 (260)
154 3e70_C DPA, signal recognition 94.6 0.027 9.2E-07 53.6 4.7 24 189-212 128-151 (328)
155 2iyv_A Shikimate kinase, SK; t 94.6 0.012 4E-07 50.7 1.9 22 191-212 3-24 (184)
156 1xjc_A MOBB protein homolog; s 94.6 0.016 5.6E-07 49.6 2.8 23 190-212 4-26 (169)
157 2bwj_A Adenylate kinase 5; pho 94.6 0.016 5.5E-07 50.3 2.9 23 190-212 12-34 (199)
158 3p32_A Probable GTPase RV1496/ 94.6 0.034 1.2E-06 53.6 5.3 37 176-212 65-101 (355)
159 4e22_A Cytidylate kinase; P-lo 94.5 0.018 6.3E-07 52.5 3.1 23 190-212 27-49 (252)
160 1e6c_A Shikimate kinase; phosp 94.5 0.014 4.8E-07 49.5 2.1 22 191-212 3-24 (173)
161 1htw_A HI0065; nucleotide-bind 94.4 0.023 7.9E-07 48.0 3.3 24 189-212 32-55 (158)
162 2vli_A Antibiotic resistance p 94.4 0.014 4.8E-07 50.0 1.9 23 190-212 5-27 (183)
163 1z6g_A Guanylate kinase; struc 94.4 0.017 5.7E-07 51.6 2.5 23 190-212 23-45 (218)
164 2pbr_A DTMP kinase, thymidylat 94.4 0.02 6.8E-07 49.4 2.9 21 192-212 2-22 (195)
165 2pt5_A Shikimate kinase, SK; a 94.4 0.02 6.9E-07 48.3 2.9 21 192-212 2-22 (168)
166 3zvl_A Bifunctional polynucleo 94.4 0.1 3.5E-06 51.3 8.3 24 189-212 257-280 (416)
167 3ney_A 55 kDa erythrocyte memb 94.3 0.021 7.2E-07 50.1 2.9 24 189-212 18-41 (197)
168 2zr9_A Protein RECA, recombina 94.3 0.028 9.4E-07 54.1 4.0 82 189-272 60-149 (349)
169 2cdn_A Adenylate kinase; phosp 94.3 0.021 7.2E-07 49.9 2.9 23 190-212 20-42 (201)
170 1nn5_A Similar to deoxythymidy 94.3 0.023 7.8E-07 50.0 3.2 23 190-212 9-31 (215)
171 1sq5_A Pantothenate kinase; P- 94.3 0.049 1.7E-06 51.3 5.6 24 189-212 79-102 (308)
172 1g5t_A COB(I)alamin adenosyltr 94.3 0.032 1.1E-06 48.8 4.0 113 190-302 28-164 (196)
173 1gtv_A TMK, thymidylate kinase 94.3 0.011 3.8E-07 52.1 1.0 21 192-212 2-22 (214)
174 2grj_A Dephospho-COA kinase; T 94.3 0.025 8.4E-07 49.5 3.2 24 189-212 11-34 (192)
175 4a74_A DNA repair and recombin 94.3 0.026 8.8E-07 50.2 3.4 24 189-212 24-47 (231)
176 3umf_A Adenylate kinase; rossm 94.2 0.027 9.2E-07 50.3 3.4 26 188-213 27-52 (217)
177 2wwf_A Thymidilate kinase, put 94.2 0.023 8E-07 49.9 3.0 23 190-212 10-32 (212)
178 3ice_A Transcription terminati 94.2 0.012 4E-07 57.1 1.0 34 178-212 163-196 (422)
179 1g41_A Heat shock protein HSLU 94.2 0.03 1E-06 55.5 4.0 46 167-212 15-72 (444)
180 1rj9_A FTSY, signal recognitio 94.2 0.026 8.8E-07 53.2 3.4 24 189-212 101-124 (304)
181 1vht_A Dephospho-COA kinase; s 94.2 0.029 1E-06 49.7 3.6 23 190-212 4-26 (218)
182 3b85_A Phosphate starvation-in 94.1 0.045 1.5E-06 48.5 4.7 22 191-212 23-44 (208)
183 1zu4_A FTSY; GTPase, signal re 94.1 0.052 1.8E-06 51.5 5.4 24 189-212 104-127 (320)
184 3tif_A Uncharacterized ABC tra 94.1 0.025 8.6E-07 51.1 3.1 23 190-212 31-53 (235)
185 2pcj_A ABC transporter, lipopr 94.1 0.026 9E-07 50.6 3.2 23 190-212 30-52 (224)
186 2ehv_A Hypothetical protein PH 94.1 0.025 8.6E-07 50.9 3.1 22 190-211 30-51 (251)
187 2f6r_A COA synthase, bifunctio 94.1 0.03 1E-06 52.1 3.6 24 189-212 74-97 (281)
188 1s96_A Guanylate kinase, GMP k 94.1 0.026 8.9E-07 50.5 3.1 24 189-212 15-38 (219)
189 1xp8_A RECA protein, recombina 94.1 0.034 1.2E-06 53.8 4.1 81 190-272 74-162 (366)
190 1zd8_A GTP:AMP phosphotransfer 94.1 0.025 8.5E-07 50.6 2.9 23 190-212 7-29 (227)
191 2f1r_A Molybdopterin-guanine d 94.0 0.015 5.1E-07 49.9 1.3 22 191-212 3-24 (171)
192 2z0h_A DTMP kinase, thymidylat 94.0 0.026 9E-07 48.8 2.9 21 192-212 2-22 (197)
193 2pez_A Bifunctional 3'-phospho 94.0 0.029 1E-06 48.0 3.2 23 190-212 5-27 (179)
194 1m7g_A Adenylylsulfate kinase; 94.0 0.032 1.1E-06 49.3 3.5 23 190-212 25-47 (211)
195 3b9q_A Chloroplast SRP recepto 94.0 0.032 1.1E-06 52.5 3.6 23 190-212 100-122 (302)
196 2i3b_A HCR-ntpase, human cance 94.0 0.023 8E-07 49.5 2.5 21 192-212 3-23 (189)
197 1aky_A Adenylate kinase; ATP:A 93.9 0.028 9.4E-07 50.0 2.9 23 190-212 4-26 (220)
198 2onk_A Molybdate/tungstate ABC 93.9 0.029 9.9E-07 50.9 3.0 22 191-212 25-46 (240)
199 1zak_A Adenylate kinase; ATP:A 93.9 0.026 8.8E-07 50.2 2.6 23 190-212 5-27 (222)
200 3fb4_A Adenylate kinase; psych 93.8 0.03 1E-06 49.5 2.9 21 192-212 2-22 (216)
201 2cbz_A Multidrug resistance-as 93.8 0.031 1.1E-06 50.6 3.1 23 190-212 31-53 (237)
202 3lnc_A Guanylate kinase, GMP k 93.8 0.021 7.1E-07 51.2 1.9 22 190-211 27-48 (231)
203 2yhs_A FTSY, cell division pro 93.8 0.058 2E-06 54.1 5.2 24 189-212 292-315 (503)
204 2v54_A DTMP kinase, thymidylat 93.8 0.031 1.1E-06 48.7 2.9 24 190-213 4-27 (204)
205 3fwy_A Light-independent proto 93.8 0.035 1.2E-06 52.6 3.4 22 189-210 47-68 (314)
206 1b0u_A Histidine permease; ABC 93.8 0.032 1.1E-06 51.3 3.1 23 190-212 32-54 (262)
207 3gfo_A Cobalt import ATP-bindi 93.8 0.032 1.1E-06 51.8 3.1 23 190-212 34-56 (275)
208 3ake_A Cytidylate kinase; CMP 93.7 0.032 1.1E-06 48.7 2.9 21 192-212 4-24 (208)
209 1np6_A Molybdopterin-guanine d 93.7 0.032 1.1E-06 47.9 2.8 23 190-212 6-28 (174)
210 1ji0_A ABC transporter; ATP bi 93.7 0.034 1.2E-06 50.4 3.1 23 190-212 32-54 (240)
211 3dl0_A Adenylate kinase; phosp 93.7 0.033 1.1E-06 49.2 2.9 21 192-212 2-22 (216)
212 3b5x_A Lipid A export ATP-bind 93.7 0.13 4.3E-06 53.0 7.7 23 190-212 369-391 (582)
213 1g6h_A High-affinity branched- 93.7 0.034 1.2E-06 50.9 3.1 23 190-212 33-55 (257)
214 2px0_A Flagellar biosynthesis 93.6 0.035 1.2E-06 52.1 3.2 24 189-212 104-127 (296)
215 1mv5_A LMRA, multidrug resista 93.6 0.038 1.3E-06 50.2 3.3 23 190-212 28-50 (243)
216 4g1u_C Hemin import ATP-bindin 93.6 0.035 1.2E-06 51.2 3.1 23 190-212 37-59 (266)
217 2pze_A Cystic fibrosis transme 93.5 0.037 1.3E-06 49.8 3.1 23 190-212 34-56 (229)
218 2olj_A Amino acid ABC transpor 93.5 0.037 1.3E-06 51.0 3.1 23 190-212 50-72 (263)
219 2d2e_A SUFC protein; ABC-ATPas 93.5 0.037 1.3E-06 50.5 3.1 23 190-212 29-51 (250)
220 2ff7_A Alpha-hemolysin translo 93.5 0.038 1.3E-06 50.4 3.1 23 190-212 35-57 (247)
221 1sgw_A Putative ABC transporte 93.5 0.032 1.1E-06 49.7 2.5 23 190-212 35-57 (214)
222 3nwj_A ATSK2; P loop, shikimat 93.5 0.028 9.6E-07 51.4 2.2 23 190-212 48-70 (250)
223 1v5w_A DMC1, meiotic recombina 93.5 0.12 4.2E-06 49.4 6.8 25 188-212 120-144 (343)
224 1vpl_A ABC transporter, ATP-bi 93.4 0.04 1.4E-06 50.5 3.1 23 190-212 41-63 (256)
225 2og2_A Putative signal recogni 93.4 0.045 1.5E-06 52.7 3.6 24 189-212 156-179 (359)
226 1fzq_A ADP-ribosylation factor 93.4 0.062 2.1E-06 45.9 4.2 26 188-213 14-39 (181)
227 3d3q_A TRNA delta(2)-isopenten 93.4 0.041 1.4E-06 52.5 3.2 22 191-212 8-29 (340)
228 1sky_E F1-ATPase, F1-ATP synth 93.4 0.059 2E-06 53.6 4.4 34 179-213 141-174 (473)
229 2ghi_A Transport protein; mult 93.4 0.041 1.4E-06 50.6 3.1 23 190-212 46-68 (260)
230 1oix_A RAS-related protein RAB 93.4 0.042 1.4E-06 47.5 3.0 24 190-213 29-52 (191)
231 1vma_A Cell division protein F 93.4 0.047 1.6E-06 51.4 3.6 24 189-212 103-126 (306)
232 2zu0_C Probable ATP-dependent 93.4 0.041 1.4E-06 50.8 3.1 23 190-212 46-68 (267)
233 2ixe_A Antigen peptide transpo 93.4 0.041 1.4E-06 50.9 3.1 23 190-212 45-67 (271)
234 2wji_A Ferrous iron transport 93.3 0.059 2E-06 45.2 3.9 23 191-213 4-26 (165)
235 2yz2_A Putative ABC transporte 93.3 0.043 1.5E-06 50.6 3.1 23 190-212 33-55 (266)
236 2qi9_C Vitamin B12 import ATP- 93.3 0.043 1.5E-06 50.0 3.1 23 190-212 26-48 (249)
237 2vp4_A Deoxynucleoside kinase; 93.3 0.047 1.6E-06 48.9 3.3 25 189-213 19-43 (230)
238 2zej_A Dardarin, leucine-rich 93.3 0.042 1.4E-06 47.1 2.8 22 192-213 4-25 (184)
239 2cvh_A DNA repair and recombin 93.3 0.045 1.5E-06 48.2 3.1 24 189-212 19-42 (220)
240 3r20_A Cytidylate kinase; stru 93.2 0.044 1.5E-06 49.4 3.0 23 190-212 9-31 (233)
241 2xxa_A Signal recognition part 93.2 0.077 2.6E-06 52.5 5.0 37 176-212 79-122 (433)
242 2nq2_C Hypothetical ABC transp 93.2 0.045 1.5E-06 50.1 3.0 23 190-212 31-53 (253)
243 2eyu_A Twitching motility prot 93.2 0.047 1.6E-06 50.2 3.2 110 189-305 24-137 (261)
244 2ihy_A ABC transporter, ATP-bi 93.2 0.045 1.5E-06 50.8 3.1 23 190-212 47-69 (279)
245 1e4v_A Adenylate kinase; trans 93.1 0.047 1.6E-06 48.2 3.0 21 192-212 2-22 (214)
246 1r6b_X CLPA protein; AAA+, N-t 93.1 0.098 3.3E-06 55.6 6.0 46 167-212 458-510 (758)
247 3m6a_A ATP-dependent protease 93.1 0.051 1.8E-06 55.5 3.7 46 167-212 81-130 (543)
248 3kl4_A SRP54, signal recogniti 93.1 0.075 2.6E-06 52.5 4.7 23 189-211 96-118 (433)
249 3io5_A Recombination and repai 93.1 0.088 3E-06 49.7 4.9 80 191-272 29-121 (333)
250 3be4_A Adenylate kinase; malar 93.1 0.048 1.6E-06 48.4 3.0 22 191-212 6-27 (217)
251 1svm_A Large T antigen; AAA+ f 93.1 0.077 2.6E-06 51.5 4.7 35 178-212 157-191 (377)
252 2w0m_A SSO2452; RECA, SSPF, un 93.0 0.05 1.7E-06 48.2 3.1 23 190-212 23-45 (235)
253 2xb4_A Adenylate kinase; ATP-b 93.0 0.048 1.6E-06 48.6 2.9 21 192-212 2-22 (223)
254 2dyk_A GTP-binding protein; GT 93.0 0.06 2.1E-06 44.4 3.4 23 191-213 2-24 (161)
255 3k1j_A LON protease, ATP-depen 93.0 0.072 2.4E-06 55.2 4.6 42 167-212 41-82 (604)
256 3a8t_A Adenylate isopentenyltr 93.0 0.06 2.1E-06 51.2 3.7 23 190-212 40-62 (339)
257 1ltq_A Polynucleotide kinase; 93.0 0.051 1.8E-06 50.7 3.2 22 191-212 3-24 (301)
258 2f9l_A RAB11B, member RAS onco 92.9 0.046 1.6E-06 47.5 2.7 24 190-213 5-28 (199)
259 3cf2_A TER ATPase, transitiona 92.9 0.13 4.4E-06 54.8 6.4 98 162-272 472-580 (806)
260 1yrb_A ATP(GTP)binding protein 92.9 0.059 2E-06 49.0 3.4 23 189-211 13-35 (262)
261 2ce2_X GTPase HRAS; signaling 92.9 0.056 1.9E-06 44.6 3.0 22 192-213 5-26 (166)
262 1tq4_A IIGP1, interferon-induc 92.9 0.056 1.9E-06 53.1 3.4 24 189-212 68-91 (413)
263 1j8m_F SRP54, signal recogniti 92.9 0.09 3.1E-06 49.3 4.6 23 190-212 98-120 (297)
264 1tue_A Replication protein E1; 92.9 0.072 2.5E-06 46.9 3.7 36 176-212 45-80 (212)
265 2v9p_A Replication protein E1; 92.8 0.053 1.8E-06 51.0 3.0 24 189-212 125-148 (305)
266 1u94_A RECA protein, recombina 92.8 0.061 2.1E-06 51.8 3.5 82 189-272 62-151 (356)
267 3sop_A Neuronal-specific septi 92.8 0.054 1.8E-06 50.0 3.0 21 192-212 4-24 (270)
268 3qf4_B Uncharacterized ABC tra 92.8 0.087 3E-06 54.5 4.8 24 189-212 380-403 (598)
269 1ak2_A Adenylate kinase isoenz 92.8 0.057 1.9E-06 48.4 3.1 23 190-212 16-38 (233)
270 3crm_A TRNA delta(2)-isopenten 92.8 0.058 2E-06 51.1 3.2 22 191-212 6-27 (323)
271 3qf4_A ABC transporter, ATP-bi 92.7 0.086 2.9E-06 54.4 4.8 23 190-212 369-391 (587)
272 1n0w_A DNA repair protein RAD5 92.7 0.058 2E-06 48.3 3.1 23 190-212 24-46 (243)
273 1a7j_A Phosphoribulokinase; tr 92.7 0.033 1.1E-06 52.0 1.4 23 190-212 5-27 (290)
274 2pjz_A Hypothetical protein ST 92.7 0.059 2E-06 49.6 3.1 22 191-212 31-52 (263)
275 2wjg_A FEOB, ferrous iron tran 92.7 0.072 2.5E-06 45.4 3.5 24 190-213 7-30 (188)
276 2nzj_A GTP-binding protein REM 92.6 0.063 2.1E-06 45.0 3.0 24 190-213 4-27 (175)
277 1z2a_A RAS-related protein RAB 92.6 0.061 2.1E-06 44.7 2.9 24 190-213 5-28 (168)
278 3sr0_A Adenylate kinase; phosp 92.6 0.06 2.1E-06 47.6 2.9 22 192-213 2-23 (206)
279 1nij_A Hypothetical protein YJ 92.6 0.064 2.2E-06 50.8 3.3 25 189-213 3-27 (318)
280 3exa_A TRNA delta(2)-isopenten 92.6 0.066 2.3E-06 50.4 3.3 23 190-212 3-25 (322)
281 1nlf_A Regulatory protein REPA 92.5 0.064 2.2E-06 49.5 3.2 23 190-212 30-52 (279)
282 1q3t_A Cytidylate kinase; nucl 92.5 0.063 2.2E-06 48.2 3.1 24 189-212 15-38 (236)
283 2v3c_C SRP54, signal recogniti 92.5 0.073 2.5E-06 52.7 3.7 23 190-212 99-121 (432)
284 2qm8_A GTPase/ATPase; G protei 92.5 0.12 3.9E-06 49.4 5.0 34 178-211 43-76 (337)
285 3dm5_A SRP54, signal recogniti 92.5 0.11 3.6E-06 51.5 4.8 24 189-212 99-122 (443)
286 3q72_A GTP-binding protein RAD 92.4 0.069 2.4E-06 44.4 3.0 21 192-212 4-24 (166)
287 2bbs_A Cystic fibrosis transme 92.4 0.069 2.4E-06 49.9 3.2 23 190-212 64-86 (290)
288 1cr0_A DNA primase/helicase; R 92.4 0.069 2.3E-06 49.7 3.2 23 190-212 35-57 (296)
289 3upu_A ATP-dependent DNA helic 92.4 0.13 4.5E-06 51.2 5.4 36 174-212 32-67 (459)
290 1u8z_A RAS-related protein RAL 92.4 0.069 2.3E-06 44.3 2.9 23 191-213 5-27 (168)
291 1fx0_B ATP synthase beta chain 92.3 0.077 2.6E-06 53.0 3.6 92 179-272 155-276 (498)
292 3nh6_A ATP-binding cassette SU 92.3 0.049 1.7E-06 51.3 2.0 23 190-212 80-102 (306)
293 2p67_A LAO/AO transport system 92.3 0.14 4.7E-06 48.9 5.3 35 178-212 44-78 (341)
294 3con_A GTPase NRAS; structural 92.3 0.07 2.4E-06 45.6 2.9 23 191-213 22-44 (190)
295 3kta_A Chromosome segregation 92.3 0.079 2.7E-06 45.3 3.2 22 191-212 27-48 (182)
296 2ged_A SR-beta, signal recogni 92.3 0.071 2.4E-06 45.7 2.9 25 189-213 47-71 (193)
297 1ls1_A Signal recognition part 92.2 0.081 2.8E-06 49.5 3.5 23 190-212 98-120 (295)
298 2lkc_A Translation initiation 92.2 0.1 3.5E-06 43.9 3.9 25 189-213 7-31 (178)
299 2gj8_A MNME, tRNA modification 92.2 0.076 2.6E-06 45.0 3.0 23 191-213 5-27 (172)
300 1z08_A RAS-related protein RAB 92.2 0.09 3.1E-06 43.8 3.4 24 190-213 6-29 (170)
301 2erx_A GTP-binding protein DI- 92.2 0.074 2.5E-06 44.3 2.9 23 191-213 4-26 (172)
302 1c1y_A RAS-related protein RAP 92.2 0.076 2.6E-06 44.1 2.9 22 192-213 5-26 (167)
303 2ck3_D ATP synthase subunit be 92.1 0.056 1.9E-06 53.7 2.3 35 178-213 142-176 (482)
304 3q85_A GTP-binding protein REM 92.1 0.077 2.6E-06 44.2 2.9 22 191-212 3-24 (169)
305 1ek0_A Protein (GTP-binding pr 92.1 0.077 2.6E-06 44.1 2.9 22 192-213 5-26 (170)
306 3foz_A TRNA delta(2)-isopenten 92.1 0.08 2.7E-06 49.7 3.2 24 189-212 9-32 (316)
307 2j37_W Signal recognition part 92.1 0.13 4.4E-06 51.9 4.9 23 189-211 100-122 (504)
308 1kao_A RAP2A; GTP-binding prot 92.1 0.079 2.7E-06 43.8 2.9 22 192-213 5-26 (167)
309 1z0j_A RAB-22, RAS-related pro 92.1 0.079 2.7E-06 44.1 2.9 23 191-213 7-29 (170)
310 1pui_A ENGB, probable GTP-bind 92.1 0.069 2.4E-06 46.6 2.6 24 190-213 26-49 (210)
311 4eaq_A DTMP kinase, thymidylat 92.0 0.084 2.9E-06 47.4 3.2 25 189-213 25-49 (229)
312 3tw8_B RAS-related protein RAB 92.0 0.1 3.5E-06 43.9 3.5 25 189-213 8-32 (181)
313 1m7b_A RND3/RHOE small GTP-bin 91.9 0.085 2.9E-06 45.0 3.0 24 190-213 7-30 (184)
314 1ky3_A GTP-binding protein YPT 91.9 0.082 2.8E-06 44.5 2.9 25 189-213 7-31 (182)
315 1h65_A Chloroplast outer envel 91.9 0.19 6.7E-06 46.0 5.7 37 178-214 27-63 (270)
316 2ocp_A DGK, deoxyguanosine kin 91.9 0.094 3.2E-06 47.2 3.4 24 190-213 2-25 (241)
317 3pqc_A Probable GTP-binding pr 91.9 0.11 3.9E-06 44.3 3.8 25 190-214 23-47 (195)
318 2r6a_A DNAB helicase, replicat 91.9 0.55 1.9E-05 46.6 9.3 24 190-213 203-226 (454)
319 3fvq_A Fe(3+) IONS import ATP- 91.8 0.086 2.9E-06 50.7 3.2 23 190-212 30-52 (359)
320 2cxx_A Probable GTP-binding pr 91.8 0.093 3.2E-06 44.7 3.2 22 192-213 3-24 (190)
321 1svi_A GTP-binding protein YSX 91.8 0.11 3.7E-06 44.6 3.6 25 189-213 22-46 (195)
322 1g16_A RAS-related protein SEC 91.8 0.09 3.1E-06 43.7 3.0 23 191-213 4-26 (170)
323 1f6b_A SAR1; gtpases, N-termin 91.8 0.082 2.8E-06 45.9 2.8 34 179-213 15-48 (198)
324 3def_A T7I23.11 protein; chlor 91.8 0.2 6.7E-06 45.8 5.4 37 178-214 24-60 (262)
325 2fn4_A P23, RAS-related protei 91.8 0.13 4.4E-06 43.3 3.9 25 189-213 8-32 (181)
326 3t1o_A Gliding protein MGLA; G 91.7 0.083 2.8E-06 45.2 2.7 23 190-212 14-36 (198)
327 1wms_A RAB-9, RAB9, RAS-relate 91.7 0.091 3.1E-06 44.1 2.9 24 190-213 7-30 (177)
328 1u0j_A DNA replication protein 91.6 0.16 5.6E-06 46.6 4.7 34 179-212 93-126 (267)
329 3t5g_A GTP-binding protein RHE 91.6 0.11 3.8E-06 43.9 3.4 24 190-213 6-29 (181)
330 1r2q_A RAS-related protein RAB 91.6 0.095 3.2E-06 43.5 2.9 23 191-213 7-29 (170)
331 2hxs_A RAB-26, RAS-related pro 91.6 0.098 3.3E-06 44.0 3.0 24 190-213 6-29 (178)
332 1r8s_A ADP-ribosylation factor 91.6 0.089 3.1E-06 43.6 2.7 21 193-213 3-23 (164)
333 1m2o_B GTP-binding protein SAR 91.6 0.097 3.3E-06 45.1 3.0 23 191-213 24-46 (190)
334 4dsu_A GTPase KRAS, isoform 2B 91.6 0.11 3.7E-06 44.1 3.3 24 191-214 5-28 (189)
335 3ihw_A Centg3; RAS, centaurin, 91.6 0.094 3.2E-06 44.9 2.9 24 190-213 20-43 (184)
336 2bme_A RAB4A, RAS-related prot 91.6 0.098 3.4E-06 44.4 3.0 24 190-213 10-33 (186)
337 2dr3_A UPF0273 protein PH0284; 91.6 0.094 3.2E-06 46.9 3.0 23 190-212 23-45 (247)
338 1z0f_A RAB14, member RAS oncog 91.5 0.097 3.3E-06 44.0 2.9 24 190-213 15-38 (179)
339 1upt_A ARL1, ADP-ribosylation 91.5 0.098 3.4E-06 43.6 2.9 24 190-213 7-30 (171)
340 4f4c_A Multidrug resistance pr 91.5 0.26 8.8E-06 55.8 7.1 23 190-212 1105-1127(1321)
341 1nrj_B SR-beta, signal recogni 91.5 0.11 3.7E-06 45.7 3.3 25 189-213 11-35 (218)
342 2www_A Methylmalonic aciduria 91.5 0.11 3.8E-06 49.8 3.6 24 189-212 73-96 (349)
343 1pzn_A RAD51, DNA repair and r 91.5 0.11 3.6E-06 50.0 3.4 24 189-212 130-153 (349)
344 3kkq_A RAS-related protein M-R 91.5 0.11 3.9E-06 43.9 3.3 24 190-213 18-41 (183)
345 3cbq_A GTP-binding protein REM 91.5 0.088 3E-06 45.6 2.6 24 189-212 22-45 (195)
346 1p5z_B DCK, deoxycytidine kina 91.5 0.086 2.9E-06 48.2 2.7 25 189-213 23-47 (263)
347 1zj6_A ADP-ribosylation factor 91.5 0.23 7.9E-06 42.3 5.3 24 190-213 16-39 (187)
348 3vr4_D V-type sodium ATPase su 91.5 0.053 1.8E-06 53.6 1.3 24 193-216 154-177 (465)
349 1z47_A CYSA, putative ABC-tran 91.5 0.097 3.3E-06 50.3 3.1 23 190-212 41-63 (355)
350 3end_A Light-independent proto 91.5 0.11 3.7E-06 48.6 3.4 23 189-211 40-62 (307)
351 2y8e_A RAB-protein 6, GH09086P 91.4 0.1 3.6E-06 43.8 3.0 23 191-213 15-37 (179)
352 2q6t_A DNAB replication FORK h 91.4 0.56 1.9E-05 46.4 8.7 29 185-213 195-223 (444)
353 1p9r_A General secretion pathw 91.4 0.19 6.4E-06 49.4 5.2 24 189-212 166-189 (418)
354 1moz_A ARL1, ADP-ribosylation 91.4 0.091 3.1E-06 44.5 2.6 25 189-213 17-41 (183)
355 3c5c_A RAS-like protein 12; GD 91.4 0.1 3.4E-06 44.8 2.9 24 190-213 21-44 (187)
356 1lw7_A Transcriptional regulat 91.3 0.096 3.3E-06 50.5 2.9 23 190-212 170-192 (365)
357 1mh1_A RAC1; GTP-binding, GTPa 91.3 0.11 3.7E-06 44.1 2.9 23 191-213 6-28 (186)
358 2a9k_A RAS-related protein RAL 91.2 0.11 3.7E-06 44.0 2.9 24 190-213 18-41 (187)
359 2qnr_A Septin-2, protein NEDD5 91.2 0.096 3.3E-06 49.1 2.8 20 193-212 21-40 (301)
360 2bov_A RAla, RAS-related prote 91.2 0.11 3.7E-06 45.0 2.9 24 190-213 14-37 (206)
361 2yyz_A Sugar ABC transporter, 91.2 0.11 3.7E-06 50.1 3.1 23 190-212 29-51 (359)
362 3rlf_A Maltose/maltodextrin im 91.1 0.11 3.7E-06 50.4 3.1 23 190-212 29-51 (381)
363 3bc1_A RAS-related protein RAB 91.1 0.11 3.8E-06 44.2 2.9 24 190-213 11-34 (195)
364 3bwd_D RAC-like GTP-binding pr 91.1 0.11 3.8E-06 43.8 2.9 23 191-213 9-31 (182)
365 3llu_A RAS-related GTP-binding 91.1 0.11 3.9E-06 44.8 3.0 23 190-212 20-42 (196)
366 2it1_A 362AA long hypothetical 91.1 0.11 3.7E-06 50.1 3.1 23 190-212 29-51 (362)
367 2qmh_A HPR kinase/phosphorylas 91.1 0.13 4.4E-06 45.1 3.2 23 190-212 34-56 (205)
368 2oil_A CATX-8, RAS-related pro 91.1 0.11 3.7E-06 44.6 2.9 24 190-213 25-48 (193)
369 3eph_A TRNA isopentenyltransfe 91.1 0.12 3.9E-06 50.5 3.2 23 190-212 2-24 (409)
370 2efe_B Small GTP-binding prote 91.1 0.11 3.9E-06 43.7 2.9 24 190-213 12-35 (181)
371 2ewv_A Twitching motility prot 91.1 0.11 3.8E-06 50.3 3.1 110 189-305 135-248 (372)
372 2iwr_A Centaurin gamma 1; ANK 91.1 0.086 2.9E-06 44.5 2.1 23 191-213 8-30 (178)
373 1ksh_A ARF-like protein 2; sma 91.0 0.12 4.2E-06 43.9 3.1 25 190-214 18-42 (186)
374 1g29_1 MALK, maltose transport 91.0 0.11 3.9E-06 50.2 3.1 23 190-212 29-51 (372)
375 1cp2_A CP2, nitrogenase iron p 91.0 0.13 4.4E-06 47.0 3.4 21 191-211 2-22 (269)
376 3f9v_A Minichromosome maintena 91.0 0.091 3.1E-06 54.2 2.5 22 192-213 329-350 (595)
377 2g6b_A RAS-related protein RAB 91.0 0.12 4.1E-06 43.5 2.9 24 190-213 10-33 (180)
378 2fg5_A RAB-22B, RAS-related pr 91.0 0.12 4.1E-06 44.4 3.0 24 190-213 23-46 (192)
379 2b6h_A ADP-ribosylation factor 90.9 0.13 4.3E-06 44.4 3.1 24 190-213 29-52 (192)
380 1v43_A Sugar-binding transport 90.9 0.12 4E-06 50.1 3.1 23 190-212 37-59 (372)
381 1vg8_A RAS-related protein RAB 90.9 0.14 5E-06 44.2 3.5 25 189-213 7-31 (207)
382 2x77_A ADP-ribosylation factor 90.9 0.24 8.1E-06 42.2 4.8 25 189-213 21-45 (189)
383 1zbd_A Rabphilin-3A; G protein 90.9 0.13 4.4E-06 44.5 3.1 24 190-213 8-31 (203)
384 3oes_A GTPase rhebl1; small GT 90.8 0.13 4.3E-06 44.6 3.0 24 190-213 24-47 (201)
385 1gwn_A RHO-related GTP-binding 90.8 0.13 4.3E-06 45.1 3.0 24 190-213 28-51 (205)
386 2obl_A ESCN; ATPase, hydrolase 90.8 0.12 4.1E-06 49.5 3.0 24 190-213 71-94 (347)
387 4bas_A ADP-ribosylation factor 90.8 0.16 5.4E-06 43.6 3.6 26 189-214 16-41 (199)
388 2atv_A RERG, RAS-like estrogen 90.8 0.13 4.3E-06 44.4 2.9 24 190-213 28-51 (196)
389 2qu8_A Putative nucleolar GTP- 90.7 0.18 6.1E-06 44.8 4.0 25 189-213 28-52 (228)
390 1ypw_A Transitional endoplasmi 90.7 0.084 2.9E-06 56.6 2.0 51 162-212 472-533 (806)
391 2h92_A Cytidylate kinase; ross 90.7 0.1 3.5E-06 46.0 2.4 22 191-212 4-25 (219)
392 4gzl_A RAS-related C3 botulinu 90.7 0.18 6E-06 43.9 3.8 24 190-213 30-53 (204)
393 3clv_A RAB5 protein, putative; 90.7 0.13 4.4E-06 44.1 2.9 24 190-213 7-30 (208)
394 2gza_A Type IV secretion syste 90.7 0.11 3.7E-06 50.2 2.6 23 190-212 175-197 (361)
395 1ega_A Protein (GTP-binding pr 90.7 0.14 4.8E-06 48.0 3.3 25 189-213 7-31 (301)
396 2fh5_B SR-beta, signal recogni 90.7 0.15 5.1E-06 44.6 3.3 24 190-213 7-30 (214)
397 3iev_A GTP-binding protein ERA 90.7 0.16 5.4E-06 47.7 3.7 26 188-213 8-33 (308)
398 2afh_E Nitrogenase iron protei 90.6 0.15 5.2E-06 47.1 3.5 22 190-211 2-23 (289)
399 2q3h_A RAS homolog gene family 90.6 0.13 4.5E-06 44.4 2.9 24 190-213 20-43 (201)
400 2o52_A RAS-related protein RAB 90.6 0.14 4.7E-06 44.4 3.0 24 190-213 25-48 (200)
401 2gf9_A RAS-related protein RAB 90.6 0.13 4.6E-06 43.9 2.9 24 190-213 22-45 (189)
402 3tkl_A RAS-related protein RAB 90.6 0.21 7.3E-06 42.6 4.2 25 189-213 15-39 (196)
403 1zd9_A ADP-ribosylation factor 90.6 0.14 4.6E-06 43.9 2.9 24 190-213 22-45 (188)
404 3reg_A RHO-like small GTPase; 90.5 0.14 4.6E-06 44.1 2.9 24 190-213 23-46 (194)
405 3d31_A Sulfate/molybdate ABC t 90.5 0.097 3.3E-06 50.2 2.1 23 190-212 26-48 (348)
406 2pt7_A CAG-ALFA; ATPase, prote 90.5 0.12 4.1E-06 49.1 2.8 104 191-303 172-277 (330)
407 2gf0_A GTP-binding protein DI- 90.5 0.13 4.5E-06 44.1 2.8 24 190-213 8-31 (199)
408 2cjw_A GTP-binding protein GEM 90.5 0.13 4.6E-06 44.3 2.9 23 190-212 6-28 (192)
409 3dz8_A RAS-related protein RAB 90.5 0.13 4.5E-06 44.0 2.8 24 190-213 23-46 (191)
410 2ew1_A RAS-related protein RAB 90.5 0.13 4.5E-06 44.8 2.8 24 190-213 26-49 (201)
411 2h57_A ADP-ribosylation factor 90.5 0.14 4.6E-06 43.9 2.8 25 190-214 21-45 (190)
412 2a5j_A RAS-related protein RAB 90.5 0.14 4.7E-06 43.9 2.9 24 190-213 21-44 (191)
413 2il1_A RAB12; G-protein, GDP, 90.5 0.13 4.6E-06 44.2 2.8 24 190-213 26-49 (192)
414 2h17_A ADP-ribosylation factor 90.4 0.14 5E-06 43.4 2.9 24 190-213 21-44 (181)
415 1g8f_A Sulfate adenylyltransfe 90.4 0.19 6.4E-06 50.7 4.1 44 169-212 374-417 (511)
416 3gd7_A Fusion complex of cysti 90.4 0.14 4.9E-06 49.8 3.2 23 190-212 47-69 (390)
417 3fdi_A Uncharacterized protein 90.4 0.15 5.2E-06 44.7 3.1 29 190-220 6-34 (201)
418 1z06_A RAS-related protein RAB 90.4 0.14 4.9E-06 43.7 2.9 24 190-213 20-43 (189)
419 2bcg_Y Protein YP2, GTP-bindin 90.4 0.15 5E-06 44.3 3.0 24 190-213 8-31 (206)
420 1x3s_A RAS-related protein RAB 90.3 0.15 5E-06 43.6 2.9 24 190-213 15-38 (195)
421 2p5s_A RAS and EF-hand domain 90.3 0.14 4.9E-06 44.2 2.8 24 190-213 28-51 (199)
422 2j1l_A RHO-related GTP-binding 90.2 0.15 5.2E-06 44.7 3.0 24 190-213 34-57 (214)
423 2qag_B Septin-6, protein NEDD5 90.2 0.14 4.8E-06 50.4 2.9 20 193-212 45-64 (427)
424 2fv8_A H6, RHO-related GTP-bin 90.1 0.16 5.4E-06 44.3 3.0 24 190-213 25-48 (207)
425 2ffh_A Protein (FFH); SRP54, s 90.1 0.17 5.8E-06 49.8 3.5 23 190-212 98-120 (425)
426 3thx_A DNA mismatch repair pro 90.1 0.057 1.9E-06 58.6 0.0 21 190-210 662-682 (934)
427 1oxx_K GLCV, glucose, ABC tran 90.1 0.089 3.1E-06 50.6 1.4 23 190-212 31-53 (353)
428 3ch4_B Pmkase, phosphomevalona 90.1 0.22 7.6E-06 43.7 3.8 24 189-212 10-33 (202)
429 4f4c_A Multidrug resistance pr 90.0 0.72 2.4E-05 52.2 8.9 24 190-213 444-467 (1321)
430 3k53_A Ferrous iron transport 90.0 0.19 6.5E-06 46.1 3.6 24 190-213 3-26 (271)
431 3lxx_A GTPase IMAP family memb 90.0 0.19 6.5E-06 45.0 3.5 26 189-214 28-53 (239)
432 3gmt_A Adenylate kinase; ssgci 89.9 0.15 5.2E-06 45.8 2.7 22 191-212 9-30 (230)
433 2atx_A Small GTP binding prote 89.9 0.17 5.7E-06 43.4 2.9 24 190-213 18-41 (194)
434 2axn_A 6-phosphofructo-2-kinas 89.9 0.18 6E-06 51.2 3.5 23 190-212 35-57 (520)
435 2j0v_A RAC-like GTP-binding pr 89.9 0.17 5.8E-06 44.1 3.0 24 190-213 9-32 (212)
436 2hup_A RAS-related protein RAB 89.9 0.17 5.8E-06 43.9 3.0 24 190-213 29-52 (201)
437 2gco_A H9, RHO-related GTP-bin 89.8 0.18 6E-06 43.7 3.0 24 190-213 25-48 (201)
438 2r9v_A ATP synthase subunit al 89.8 0.29 1E-05 48.9 4.9 35 178-213 164-199 (515)
439 2g3y_A GTP-binding protein GEM 89.7 0.17 5.9E-06 44.6 2.9 23 190-212 37-59 (211)
440 2npi_A Protein CLP1; CLP1-PCF1 89.7 0.14 4.7E-06 51.1 2.5 24 190-213 138-161 (460)
441 3gqb_B V-type ATP synthase bet 89.7 0.093 3.2E-06 51.9 1.2 25 192-216 149-173 (464)
442 2rcn_A Probable GTPase ENGC; Y 89.7 0.17 6E-06 48.5 3.1 23 191-213 216-238 (358)
443 3cph_A RAS-related protein SEC 89.7 0.17 5.9E-06 43.9 2.9 24 190-213 20-43 (213)
444 2fu5_C RAS-related protein RAB 89.6 0.11 3.7E-06 44.0 1.5 24 190-213 8-31 (183)
445 1fx0_A ATP synthase alpha chai 89.6 0.23 7.8E-06 49.7 3.9 77 191-272 164-265 (507)
446 1f2t_A RAD50 ABC-ATPase; DNA d 89.6 0.22 7.6E-06 41.3 3.3 23 190-212 23-45 (149)
447 3cr8_A Sulfate adenylyltranfer 89.5 0.14 4.8E-06 52.3 2.4 23 190-212 369-391 (552)
448 2yv5_A YJEQ protein; hydrolase 89.5 0.18 6.3E-06 47.2 3.1 31 176-211 156-186 (302)
449 2f7s_A C25KG, RAS-related prot 89.4 0.2 6.7E-06 43.9 3.1 24 190-213 25-48 (217)
450 2qe7_A ATP synthase subunit al 89.4 0.35 1.2E-05 48.3 5.1 35 178-213 151-186 (502)
451 2qag_C Septin-7; cell cycle, c 89.3 0.18 6E-06 49.6 2.9 21 193-213 34-54 (418)
452 4dkx_A RAS-related protein RAB 89.3 0.19 6.6E-06 44.6 2.9 22 192-213 15-36 (216)
453 3q3j_B RHO-related GTP-binding 89.3 0.19 6.6E-06 44.1 2.9 24 190-213 27-50 (214)
454 3ozx_A RNAse L inhibitor; ATP 89.2 0.19 6.4E-06 51.2 3.1 23 190-212 294-316 (538)
455 2dpy_A FLII, flagellum-specifi 89.1 0.19 6.6E-06 49.7 3.0 34 179-213 147-180 (438)
456 2orw_A Thymidine kinase; TMTK, 89.1 0.2 7E-06 43.2 2.8 21 191-211 4-24 (184)
457 1bif_A 6-phosphofructo-2-kinas 89.0 0.22 7.4E-06 49.8 3.3 23 190-212 39-61 (469)
458 1yqt_A RNAse L inhibitor; ATP- 89.0 0.2 6.8E-06 51.0 3.1 23 190-212 312-334 (538)
459 2xtp_A GTPase IMAP family memb 89.0 0.26 8.9E-06 44.7 3.6 25 189-213 21-45 (260)
460 1mky_A Probable GTP-binding pr 88.9 0.41 1.4E-05 47.3 5.3 45 170-214 151-204 (439)
461 3lda_A DNA repair protein RAD5 88.8 0.22 7.6E-06 48.6 3.2 23 189-211 177-199 (400)
462 4dhe_A Probable GTP-binding pr 88.8 0.17 5.7E-06 44.5 2.1 26 189-214 28-53 (223)
463 4edh_A DTMP kinase, thymidylat 88.8 0.24 8.4E-06 43.8 3.2 23 190-212 6-28 (213)
464 1wf3_A GTP-binding protein; GT 88.7 0.26 9E-06 46.1 3.6 24 190-213 7-30 (301)
465 2aka_B Dynamin-1; fusion prote 88.7 0.45 1.5E-05 43.9 5.2 38 177-214 9-50 (299)
466 2r8r_A Sensor protein; KDPD, P 88.7 0.22 7.4E-06 44.6 2.8 21 192-212 8-28 (228)
467 1yqt_A RNAse L inhibitor; ATP- 88.7 0.21 7.3E-06 50.8 3.1 23 190-212 47-69 (538)
468 3ozx_A RNAse L inhibitor; ATP 88.7 0.23 7.9E-06 50.5 3.3 23 190-212 25-47 (538)
469 3euj_A Chromosome partition pr 88.7 0.22 7.5E-06 49.8 3.1 22 191-212 30-51 (483)
470 1u0l_A Probable GTPase ENGC; p 88.7 0.23 7.8E-06 46.5 3.0 33 176-213 160-192 (301)
471 3ld9_A DTMP kinase, thymidylat 88.6 0.29 9.8E-06 43.7 3.5 24 189-212 20-43 (223)
472 3t5d_A Septin-7; GTP-binding p 88.6 0.22 7.7E-06 45.7 2.9 23 191-213 9-31 (274)
473 3mfy_A V-type ATP synthase alp 88.5 0.18 6.1E-06 51.0 2.3 53 178-235 216-276 (588)
474 1jwy_B Dynamin A GTPase domain 88.5 0.22 7.5E-06 46.6 2.8 26 188-213 22-47 (315)
475 3bk7_A ABC transporter ATP-bin 88.3 0.23 7.9E-06 51.3 3.1 114 190-304 382-535 (607)
476 4dzz_A Plasmid partitioning pr 88.3 0.24 8.4E-06 42.8 2.9 22 191-212 2-24 (206)
477 3iby_A Ferrous iron transport 88.3 0.25 8.6E-06 45.0 3.0 23 191-213 2-24 (256)
478 3cpj_B GTP-binding protein YPT 88.2 0.25 8.4E-06 43.6 2.8 24 190-213 13-36 (223)
479 3g5u_A MCG1178, multidrug resi 88.2 0.35 1.2E-05 54.5 4.7 111 192-305 418-589 (1284)
480 3b60_A Lipid A export ATP-bind 88.1 0.25 8.5E-06 50.8 3.2 23 190-212 369-391 (582)
481 3lxw_A GTPase IMAP family memb 88.1 0.27 9.1E-06 44.5 3.1 24 190-213 21-44 (247)
482 3j16_B RLI1P; ribosome recycli 88.1 0.24 8.2E-06 51.1 3.0 114 191-305 379-532 (608)
483 2qtf_A Protein HFLX, GTP-bindi 88.1 0.25 8.5E-06 47.6 3.0 25 189-213 178-202 (364)
484 3b1v_A Ferrous iron uptake tra 88.1 0.38 1.3E-05 44.3 4.1 24 190-213 3-26 (272)
485 3v9p_A DTMP kinase, thymidylat 88.0 0.22 7.4E-06 44.7 2.3 23 190-212 25-47 (227)
486 3lv8_A DTMP kinase, thymidylat 87.9 0.28 9.6E-06 44.2 3.0 23 190-212 27-49 (236)
487 3ea0_A ATPase, para family; al 87.8 0.34 1.2E-05 43.3 3.5 23 189-211 3-26 (245)
488 1t9h_A YLOQ, probable GTPase E 87.8 0.13 4.5E-06 48.4 0.7 22 191-212 174-195 (307)
489 3j16_B RLI1P; ribosome recycli 87.7 0.27 9.1E-06 50.8 3.1 23 190-212 103-125 (608)
490 3bk7_A ABC transporter ATP-bin 87.7 0.26 9.1E-06 50.8 3.1 23 190-212 117-139 (607)
491 4djt_A GTP-binding nuclear pro 87.7 0.17 5.8E-06 44.3 1.4 24 190-213 11-34 (218)
492 2zts_A Putative uncharacterize 87.6 0.28 9.7E-06 43.8 2.9 22 190-211 30-51 (251)
493 2qag_A Septin-2, protein NEDD5 87.5 0.24 8.3E-06 47.6 2.5 22 192-213 39-60 (361)
494 1m8p_A Sulfate adenylyltransfe 87.5 0.31 1.1E-05 49.9 3.5 24 189-212 395-418 (573)
495 3gj0_A GTP-binding nuclear pro 87.5 0.19 6.6E-06 44.1 1.7 22 190-211 15-36 (221)
496 3vr4_A V-type sodium ATPase ca 87.3 0.76 2.6E-05 46.6 6.0 53 178-235 221-281 (600)
497 3a1s_A Iron(II) transport prot 87.3 0.34 1.2E-05 44.1 3.3 24 190-213 5-28 (258)
498 1c9k_A COBU, adenosylcobinamid 87.3 0.3 1E-05 42.0 2.7 21 193-213 2-22 (180)
499 2yl4_A ATP-binding cassette SU 87.2 0.26 8.7E-06 50.9 2.6 23 190-212 370-392 (595)
500 1x6v_B Bifunctional 3'-phospho 87.2 0.32 1.1E-05 50.2 3.3 24 189-212 51-74 (630)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=1.6e-39 Score=337.37 Aligned_cols=236 Identities=17% Similarity=0.217 Sum_probs=185.8
Q ss_pred ccchhhHHHHHHHHhcC-CCCcEEEEEEecCCCchHHHHHHhhc--CccccccccchHHH-------------HHHHHHH
Q 040913 170 SEFERAREEWFDLLIEG-PIGLSVVAILDSSGFDKTAFAADTYN--NNHVKFYFDCLAWI-------------LDDIIRS 233 (425)
Q Consensus 170 vGr~~~~~~l~~~L~~~-~~~~~vi~IvG~gGvGKTtLa~~v~~--~~~~~~~F~~~~wv-------------~~~il~~ 233 (425)
|||+.++++|.++|..+ +...++|+|+||||+||||||+++|+ +.+++.+|++++|| +..|+.+
T Consensus 131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~il~~ 210 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDILLM 210 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHHHHHH
Confidence 69999999999999865 44689999999999999999999998 77999999999998 5677888
Q ss_pred hCCCCC---CCccCCCCHHHHHHHHHHHhcCC-eEEEEecccCCChhhHHHHHhhCCCCCCCcEEEEecCChhHHHH---
Q 040913 234 LMPPSR---VTVIIGEDYKLKKSILRDFLTNK-KYFIALDDVCHNIEIWDDLEEVLPDNQNGSRVLITVINPSLLTS--- 306 (425)
Q Consensus 234 l~~~~~---~~~~~~~~~~~l~~~l~~~l~~k-r~LlVLDdvw~~~~~~~~l~~~l~~~~~gskIivTTR~~~va~~--- 306 (425)
+..... .......+...+...+++.|++| |||||||||| +.+.+ .+.. .+||+||||||+..++..
T Consensus 211 l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~-~~~~~-~~~~-----~~gs~ilvTTR~~~v~~~~~~ 283 (549)
T 2a5y_B 211 LKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVV-QEETI-RWAQ-----ELRLRCLVTTRDVEISNAASQ 283 (549)
T ss_dssp HTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEEC-CHHHH-HHHH-----HTTCEEEEEESBGGGGGGCCS
T ss_pred HhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCC-Cchhh-cccc-----cCCCEEEEEcCCHHHHHHcCC
Confidence 876532 11223446678899999999996 9999999999 77654 2211 169999999999988764
Q ss_pred ---------------hcCcC---------------CCCc--ccc-----chhhhccccCCChHHHHHHHHHhchhccCCC
Q 040913 307 ---------------FELLN---------------GEKI--RCD-----YVLVEGPLIRIKHSAWQFFVLHYGSAALGNY 349 (425)
Q Consensus 307 ---------------~~Lf~---------------~~~I--kC~-----i~~~g~~L~~~~~~~w~~~~~~~~~~~~~~~ 349 (425)
|+||. +++| +|+ ++++|+.|+.+. .+|...+....+... .
T Consensus 284 ~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~~-w~~~~~l~~~l~~~~--~ 360 (549)
T 2a5y_B 284 TCEFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSGNPATLMMFFKSCEPKT-FEKMAQLNNKLESRG--L 360 (549)
T ss_dssp CEEEEECCCCCHHHHHHHHHHTSCCCC--CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSSS-HHHHHHHHHHHHHHC--S
T ss_pred CCeEEECCCCCHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhCCChHHHHHHHHHhccch-HHHHHHhHHHhhccc--H
Confidence 77773 2344 787 999999998773 233333333322221 1
Q ss_pred CchHHHHHHhchhhcccCCChhhHHHHh-----------hhhccCCCCcccHHHHHHHHHHc--CCCC-----CCHHHHH
Q 040913 350 MDEKMVLAVLSRTCSVFELPLHLKVCCI-----------YLCVFRPGIEISSRQLCQLWIAE--GFIP-----YNSEETA 411 (425)
Q Consensus 350 ~~~~~~~~~l~~~~sy~~Lp~~lk~cfl-----------y~sifP~~~~i~~~~Li~~Wiae--g~i~-----~~~e~~a 411 (425)
. .+.+++. +||++||+++|.||+ |||+||+++.|+ +++|+|+ ||+. .+.++++
T Consensus 361 ~---~i~~~l~--~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~~~~~~~~~ 431 (549)
T 2a5y_B 361 V---GVECITP--YSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICSNEEEQLDDEVA 431 (549)
T ss_dssp S---TTCCCSS--SSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC-------CCCTHHHH
T ss_pred H---HHHHHHh--cccccccHHHHHHHhccchhhhhHhhheeeeCCCCeee----eeeeeeeccceeccCCCCCCHHHHH
Confidence 1 6778899 999999999999999 999999999999 8999999 9997 3478888
Q ss_pred HHHHHHHHHCcCCC
Q 040913 412 ELYLKELIHRGFIQ 425 (425)
Q Consensus 412 ~~~~~eLv~r~llq 425 (425)
+ ||++|+++||||
T Consensus 432 ~-~l~~L~~rsLl~ 444 (549)
T 2a5y_B 432 D-RLKRLSKRGALL 444 (549)
T ss_dssp H-HHHHTTTBSSCS
T ss_pred H-HHHHHHHcCCee
Confidence 8 999999999997
No 2
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=1.1e-33 Score=318.92 Aligned_cols=246 Identities=20% Similarity=0.312 Sum_probs=196.8
Q ss_pred CCCCCCCCcccchhhHHHHHHHHhcCCCCcEEEEEEecCCCchHHHHHHhhcCccc-ccccc-chHHH------------
Q 040913 161 SEGQPRLDISEFERAREEWFDLLIEGPIGLSVVAILDSSGFDKTAFAADTYNNNHV-KFYFD-CLAWI------------ 226 (425)
Q Consensus 161 ~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLa~~v~~~~~~-~~~F~-~~~wv------------ 226 (425)
..+.....||||+.++++|.++|...+...++|+|+||||+||||||+++|++.++ ..+|. .++||
T Consensus 118 ~~p~~~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 197 (1249)
T 3sfz_A 118 GVPQRPVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLM 197 (1249)
T ss_dssp TCCCCCSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHH
T ss_pred CCCCCCceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHHH
Confidence 34455677999999999999999877667899999999999999999999997544 55665 45577
Q ss_pred -HHHHHHHhCCCCCCCccCCCCHHHHHHHHHHHhcCC--eEEEEecccCCChhhHHHHHhhCCCCCCCcEEEEecCChhH
Q 040913 227 -LDDIIRSLMPPSRVTVIIGEDYKLKKSILRDFLTNK--KYFIALDDVCHNIEIWDDLEEVLPDNQNGSRVLITVINPSL 303 (425)
Q Consensus 227 -~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~k--r~LlVLDdvw~~~~~~~~l~~~l~~~~~gskIivTTR~~~v 303 (425)
+..++..+............+.+.+...++..+.+| |+|||||||| +...|..+ .+||+||||||++.+
T Consensus 198 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~-~~~~~~~~-------~~~~~ilvTtR~~~~ 269 (1249)
T 3sfz_A 198 KLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVW-DPWVLKAF-------DNQCQILLTTRDKSV 269 (1249)
T ss_dssp HHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCC-CHHHHTTT-------CSSCEEEEEESSTTT
T ss_pred HHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCC-CHHHHHhh-------cCCCEEEEEcCCHHH
Confidence 556677776654322334567889999999999887 9999999999 87766543 568999999999988
Q ss_pred HHH-------------------hcCcC-------------CCCc--ccc-----chhhhccccCCChHHHHHHHHHhchh
Q 040913 304 LTS-------------------FELLN-------------GEKI--RCD-----YVLVEGPLIRIKHSAWQFFVLHYGSA 344 (425)
Q Consensus 304 a~~-------------------~~Lf~-------------~~~I--kC~-----i~~~g~~L~~~~~~~w~~~~~~~~~~ 344 (425)
+.. |+||. +++| +|+ ++.+|+.|+.++ ..|...++.+...
T Consensus 270 ~~~~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~-~~~~~~l~~l~~~ 348 (1249)
T 3sfz_A 270 TDSVMGPKHVVPVESGLGREKGLEILSLFVNMKKEDLPAEAHSIIKECKGSPLVVSLIGALLRDFP-NRWAYYLRQLQNK 348 (1249)
T ss_dssp TTTCCSCBCCEECCSSCCHHHHHHHHHHHHTSCSTTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS-SCHHHHHHHHHSC
T ss_pred HHhhcCCceEEEecCCCCHHHHHHHHHHhhCCChhhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh-hHHHHHHHHHhhh
Confidence 742 55553 3345 787 999999998876 4788888777443
Q ss_pred ccC------CCCchHHHHHHhchhhcccCCChhhHHHHhhhhccCCCCcccHHHHHHHHHHcCCCCCCHHHHHHHHHHHH
Q 040913 345 ALG------NYMDEKMVLAVLSRTCSVFELPLHLKVCCIYLCVFRPGIEISSRQLCQLWIAEGFIPYNSEETAELYLKEL 418 (425)
Q Consensus 345 ~~~------~~~~~~~~~~~l~~~~sy~~Lp~~lk~cfly~sifP~~~~i~~~~Li~~Wiaeg~i~~~~e~~a~~~~~eL 418 (425)
... ....+ .+..+|. +||+.||+++|.||+|||+||+++.|+++.++.+|.++ ++.++.+|++|
T Consensus 349 ~~~~~~~~~~~~~~-~~~~~l~--~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~-------~~~~~~~l~~L 418 (1249)
T 3sfz_A 349 QFKRIRKSSSYDYE-ALDEAMS--ISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLE-------TEEVEDILQEF 418 (1249)
T ss_dssp CCCCSSCTTCTTHH-HHHHHHH--HHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCC-------HHHHHHHHHHH
T ss_pred hhhhcccccccchH-HHHHHHH--HHHHhCCHHHHHHHHHhCccCCCCeeCHHHHHHHhCCC-------HHHHHHHHHHH
Confidence 211 11223 7999999 99999999999999999999999999999999999765 46789999999
Q ss_pred HHCcCCC
Q 040913 419 IHRGFIQ 425 (425)
Q Consensus 419 v~r~llq 425 (425)
+++||||
T Consensus 419 ~~~sl~~ 425 (1249)
T 3sfz_A 419 VNKSLLF 425 (1249)
T ss_dssp HHTTSCE
T ss_pred HhccceE
Confidence 9999985
No 3
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=99.98 E-value=8e-33 Score=294.84 Aligned_cols=228 Identities=17% Similarity=0.195 Sum_probs=178.7
Q ss_pred CcccchhhHHHHHHHHhcCCCCcEEEEEEecCCCchHHHHHHhhcCccccccccc-hHHH-----------HHHHHH---
Q 040913 168 DISEFERAREEWFDLLIEGPIGLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDC-LAWI-----------LDDIIR--- 232 (425)
Q Consensus 168 ~~vGr~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLa~~v~~~~~~~~~F~~-~~wv-----------~~~il~--- 232 (425)
..|||+.++++|.++|...+ ..++|+|+||||+||||||+++|++.+++.+|+. ++|+ +..|+.
T Consensus 129 ~~VGRe~eLeeL~elL~~~d-~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~lL~ 207 (1221)
T 1vt4_I 129 YNVSRLQPYLKLRQALLELR-PAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLY 207 (1221)
T ss_dssp SCCCCHHHHHHHHHHHHHCC-SSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHhccC-CCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHHh
Confidence 35999999999999998643 3789999999999999999999998888999987 7787 233333
Q ss_pred HhCCCCCCC-c---cCCCCHHHHHHHHHHHh---cCCeEEEEecccCCChhhHHHHHhhCCCCCCCcEEEEecCChhHHH
Q 040913 233 SLMPPSRVT-V---IIGEDYKLKKSILRDFL---TNKKYFIALDDVCHNIEIWDDLEEVLPDNQNGSRVLITVINPSLLT 305 (425)
Q Consensus 233 ~l~~~~~~~-~---~~~~~~~~l~~~l~~~l---~~kr~LlVLDdvw~~~~~~~~l~~~l~~~~~gskIivTTR~~~va~ 305 (425)
.+....... . ....+.+.+...++..| .+||+|||||||| +.+.|+.+. +||+||||||++.++.
T Consensus 208 ~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVw-d~eqLe~f~-------pGSRILVTTRd~~Va~ 279 (1221)
T 1vt4_I 208 QIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQ-NAKAWNAFN-------LSCKILLTTRFKQVTD 279 (1221)
T ss_dssp HHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCC-CHHHHHHHH-------SSCCEEEECSCSHHHH
T ss_pred hcCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcC-hHHHHHhhC-------CCeEEEEeccChHHHH
Confidence 332211100 0 01123455677777766 6899999999999 888887652 5999999999999873
Q ss_pred H-----------------------hcCcC---C---CCc---ccc-----chhhhccccCCChH--HHHHHHHHhchhcc
Q 040913 306 S-----------------------FELLN---G---EKI---RCD-----YVLVEGPLIRIKHS--AWQFFVLHYGSAAL 346 (425)
Q Consensus 306 ~-----------------------~~Lf~---~---~~I---kC~-----i~~~g~~L~~~~~~--~w~~~~~~~~~~~~ 346 (425)
. |+||. + .++ -|+ ++++|+.|+.++.. +|...
T Consensus 280 ~l~g~~vy~LeL~d~dL~LS~eEA~eLF~~~~g~~~eeL~~eICgGLPLALkLaGs~Lr~k~~s~eeW~~~--------- 350 (1221)
T 1vt4_I 280 FLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHV--------- 350 (1221)
T ss_dssp HHHHHSSCEEEECSSSSCCCHHHHHHHHHHHHCCCTTTHHHHHCCCCHHHHHHHHHHHHHSCSSHHHHHHC---------
T ss_pred hcCCCeEEEecCccccCCcCHHHHHHHHHHHcCCCHHHHHHHHhCCCHHHHHHHHHHHhCCCCCHHHHhcC---------
Confidence 1 55553 1 222 476 89999999988533 88753
Q ss_pred CCCCchHHHHHHhchhhcccCCChhh-HHHHhhhhccCCCCcccHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHCcCCC
Q 040913 347 GNYMDEKMVLAVLSRTCSVFELPLHL-KVCCIYLCVFRPGIEISSRQLCQLWIAEGFIPYNSEETAELYLKELIHRGFIQ 425 (425)
Q Consensus 347 ~~~~~~~~~~~~l~~~~sy~~Lp~~l-k~cfly~sifP~~~~i~~~~Li~~Wiaeg~i~~~~e~~a~~~~~eLv~r~llq 425 (425)
.. . .+..+|. +||+.||++. |.||+|||+||+++.|+++.++.+|+++| ++.++.+|++|+++||||
T Consensus 351 -~~--~-~I~aaLe--lSYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~aeG------eedAe~~L~eLvdRSLLq 418 (1221)
T 1vt4_I 351 -NC--D-KLTTIIE--SSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI------KSDVMVVVNKLHKYSLVE 418 (1221)
T ss_dssp -SC--H-HHHHHHH--HHHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSC------SHHHHHHHHHHHTSSSSS
T ss_pred -Ch--h-HHHHHHH--HHHHhCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCC------HHHHHHHHHHHHhhCCEE
Confidence 11 2 8999999 9999999999 99999999999999999999999999987 245899999999999986
No 4
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=99.96 E-value=1.9e-29 Score=264.13 Aligned_cols=243 Identities=19% Similarity=0.315 Sum_probs=185.7
Q ss_pred CCCCCcccchhhHHHHHHHHhcCCCCcEEEEEEecCCCchHHHHHHhhcCccc-ccccc-chHHH-------------HH
Q 040913 164 QPRLDISEFERAREEWFDLLIEGPIGLSVVAILDSSGFDKTAFAADTYNNNHV-KFYFD-CLAWI-------------LD 228 (425)
Q Consensus 164 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLa~~v~~~~~~-~~~F~-~~~wv-------------~~ 228 (425)
...+.+|||+.+.++|.++|.......++|+|+||||+||||||.+++++.++ ..+|+ .++|+ +.
T Consensus 121 ~~~~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~~~~~~~~~l~ 200 (591)
T 1z6t_A 121 QRPVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQDKSGLLMKLQ 200 (591)
T ss_dssp CCCSSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESCCHHHHHHHHH
T ss_pred CCCCeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCCchHHHHHHHH
Confidence 34567999999999999999865556899999999999999999999997666 78894 67887 33
Q ss_pred HHHHHhCCCCCCCccCCCCHHHHHHHHHHHhcC--CeEEEEecccCCChhhHHHHHhhCCCCCCCcEEEEecCChhHHHH
Q 040913 229 DIIRSLMPPSRVTVIIGEDYKLKKSILRDFLTN--KKYFIALDDVCHNIEIWDDLEEVLPDNQNGSRVLITVINPSLLTS 306 (425)
Q Consensus 229 ~il~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~--kr~LlVLDdvw~~~~~~~~l~~~l~~~~~gskIivTTR~~~va~~ 306 (425)
.+...+............+.+.+...+...+.+ +++|||||||| +...+. .+ ++|++||||||+..++..
T Consensus 201 ~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~-~~~~l~----~l---~~~~~ilvTsR~~~~~~~ 272 (591)
T 1z6t_A 201 NLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVW-DSWVLK----AF---DSQCQILLTTRDKSVTDS 272 (591)
T ss_dssp HHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEEC-CHHHHH----TT---CSSCEEEEEESCGGGGTT
T ss_pred HHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCC-CHHHHH----Hh---cCCCeEEEECCCcHHHHh
Confidence 334444421111122345677888888888876 78999999999 765443 23 458999999999987653
Q ss_pred -------------------hcCcC-------------CCCc--ccc-----chhhhccccCCChHHHHHHHHHhchhccC
Q 040913 307 -------------------FELLN-------------GEKI--RCD-----YVLVEGPLIRIKHSAWQFFVLHYGSAALG 347 (425)
Q Consensus 307 -------------------~~Lf~-------------~~~I--kC~-----i~~~g~~L~~~~~~~w~~~~~~~~~~~~~ 347 (425)
++||. +++| +|+ +..+|+.|+.++. .|...++.+......
T Consensus 273 ~~~~~~~v~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~~-~w~~~l~~l~~~~~~ 351 (591)
T 1z6t_A 273 VMGPKYVVPVESSLGKEKGLEILSLFVNMKKADLPEQAHSIIKECKGSPLVVSLIGALLRDFPN-RWEYYLKQLQNKQFK 351 (591)
T ss_dssp CCSCEEEEECCSSCCHHHHHHHHHHHHTSCGGGSCTHHHHHHHHHTTCHHHHHHHHHHHHHSTT-CHHHHHHHHHSCCCC
T ss_pred cCCCceEeecCCCCCHHHHHHHHHHHhCCCcccccHHHHHHHHHhCCCcHHHHHHHHHHhcCch-hHHHHHHHHHHhHHH
Confidence 44442 1233 676 8899999987643 788888776533211
Q ss_pred ------CCCchHHHHHHhchhhcccCCChhhHHHHhhhhccCCCCcccHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHC
Q 040913 348 ------NYMDEKMVLAVLSRTCSVFELPLHLKVCCIYLCVFRPGIEISSRQLCQLWIAEGFIPYNSEETAELYLKELIHR 421 (425)
Q Consensus 348 ------~~~~~~~~~~~l~~~~sy~~Lp~~lk~cfly~sifP~~~~i~~~~Li~~Wiaeg~i~~~~e~~a~~~~~eLv~r 421 (425)
..... .+..++. .||+.||++.|.||++||+||+|+.|+.+.++.+|.++ .+.++.++++|+++
T Consensus 352 ~~~~~~~~~~~-~l~~~l~--~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~-------~~~~~~~l~~L~~~ 421 (591)
T 1z6t_A 352 RIRKSSSYDYE-ALDEAMS--ISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDME-------TEEVEDILQEFVNK 421 (591)
T ss_dssp CSSCCCSSCCH-HHHHHHH--HHHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHTCC-------HHHHHHHHHHHHHT
T ss_pred HhhhccccchH-HHHHHHH--HHHHhCCHHHHHHHHHccccCCCCccCHHHHHHHhccC-------HHHHHHHHHHHHhC
Confidence 11112 8999999 99999999999999999999999999999999999654 34578999999999
Q ss_pred cCCC
Q 040913 422 GFIQ 425 (425)
Q Consensus 422 ~llq 425 (425)
|||+
T Consensus 422 ~Ll~ 425 (591)
T 1z6t_A 422 SLLF 425 (591)
T ss_dssp TSSE
T ss_pred cCeE
Confidence 9984
No 5
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=99.45 E-value=7.8e-14 Score=113.31 Aligned_cols=74 Identities=15% Similarity=0.076 Sum_probs=58.6
Q ss_pred hHHHHHHHhhhHHHHHHHHHhHHHHHHHHHHH------HHHHhhhh--ccCChhHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 040913 33 TPLLQNLLAESEIIASTLLANYEADMALLLFQ------LLRKKINE--DVKRPDILKILEDVNQFVHESEEVIDTFFINI 104 (425)
Q Consensus 33 ~~ll~~L~~~~~~~~~~~l~~l~~d~~~l~~~------~l~~a~~~--~~~~~~v~~Wl~~lr~layd~eD~lD~~~~~~ 104 (425)
++++++|.+-.. ..+.++.++++++++|+.+ +|.+++.+ +..|+.++.|+++||+++||+|||||+|.++.
T Consensus 4 ~~ll~KL~~ll~-~E~~l~~gv~~~i~~Lk~eL~~m~a~L~da~~~~~~~~d~~vk~W~~~vrdlaYD~ED~iD~f~~~~ 82 (115)
T 3qfl_A 4 SNLIPKLGELLT-EEFKLHKGVKKNIEDLGKELESMNAALIKIGEVPREQLDSQDKLWADEVRELSYVIEDVVDKFLVQV 82 (115)
T ss_dssp CSHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-HHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345555555221 0167888888888888755 78899887 66899999999999999999999999999988
Q ss_pred hhh
Q 040913 105 MQQ 107 (425)
Q Consensus 105 ~~~ 107 (425)
...
T Consensus 83 ~~~ 85 (115)
T 3qfl_A 83 DGI 85 (115)
T ss_dssp HHC
T ss_pred ccc
Confidence 653
No 6
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=98.90 E-value=1.6e-09 Score=107.36 Aligned_cols=133 Identities=18% Similarity=0.121 Sum_probs=82.9
Q ss_pred CCCCcccchhhHHHHHHHH-hc---C-CCCcEEEEE--EecCCCchHHHHHHhhcCccccc-----cccchHHH------
Q 040913 165 PRLDISEFERAREEWFDLL-IE---G-PIGLSVVAI--LDSSGFDKTAFAADTYNNNHVKF-----YFDCLAWI------ 226 (425)
Q Consensus 165 ~~~~~vGr~~~~~~l~~~L-~~---~-~~~~~vi~I--vG~gGvGKTtLa~~v~~~~~~~~-----~F~~~~wv------ 226 (425)
.+..++||+.+++.|.++| .. + ......+.| +|++|+||||||+.+++...... .|. .+|+
T Consensus 20 ~p~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 98 (412)
T 1w5s_A 20 IPPELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVK-QAYVNAFNAP 98 (412)
T ss_dssp CCSSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEE-EEEEEGGGCC
T ss_pred CCCCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCcee-EEEEECCCCC
Confidence 3477999999999999988 42 2 023455666 99999999999999987421110 111 1122
Q ss_pred -----HHHHHHHhCCCCCCCccCCCCHHHHHHHHHHHhc--CCeEEEEecccCCCh--------hhHHHHHhhCCCC---
Q 040913 227 -----LDDIIRSLMPPSRVTVIIGEDYKLKKSILRDFLT--NKKYFIALDDVCHNI--------EIWDDLEEVLPDN--- 288 (425)
Q Consensus 227 -----~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~l~--~kr~LlVLDdvw~~~--------~~~~~l~~~l~~~--- 288 (425)
+..++.++..... ....+...+...+...+. +++++|||||++ .. +.+..+...+...
T Consensus 99 ~~~~~~~~l~~~l~~~~~---~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~-~l~~~~~~~~~~l~~l~~~~~~~~~~ 174 (412)
T 1w5s_A 99 NLYTILSLIVRQTGYPIQ---VRGAPALDILKALVDNLYVENHYLLVILDEFQ-SMLSSPRIAAEDLYTLLRVHEEIPSR 174 (412)
T ss_dssp SHHHHHHHHHHHHTCCCC---CTTCCHHHHHHHHHHHHHHHTCEEEEEEESTH-HHHSCTTSCHHHHHHHHTHHHHSCCT
T ss_pred CHHHHHHHHHHHhCCCCC---CCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHH-HHhhccCcchHHHHHHHHHHHhcccC
Confidence 6677777755422 112345666777777775 789999999997 32 3333333333211
Q ss_pred C--CCcEEEEecCChh
Q 040913 289 Q--NGSRVLITVINPS 302 (425)
Q Consensus 289 ~--~gskIivTTR~~~ 302 (425)
+ ....+|+||+...
T Consensus 175 ~~~~~v~lI~~~~~~~ 190 (412)
T 1w5s_A 175 DGVNRIGFLLVASDVR 190 (412)
T ss_dssp TSCCBEEEEEEEEETH
T ss_pred CCCceEEEEEEecccc
Confidence 2 3455888887654
No 7
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.72 E-value=1.9e-08 Score=98.55 Aligned_cols=132 Identities=16% Similarity=0.039 Sum_probs=83.8
Q ss_pred CCcccchhhHHHHHHHHhc--CCCCcEEEEEEecCCCchHHHHHHhhcCccc---------cccc---cch------HHH
Q 040913 167 LDISEFERAREEWFDLLIE--GPIGLSVVAILDSSGFDKTAFAADTYNNNHV---------KFYF---DCL------AWI 226 (425)
Q Consensus 167 ~~~vGr~~~~~~l~~~L~~--~~~~~~vi~IvG~gGvGKTtLa~~v~~~~~~---------~~~F---~~~------~wv 226 (425)
..++||+.+++.+.+++.. .....+.+.|+|++|+||||||+.+++...- ...| ++. .-+
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 99 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQAV 99 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHHHH
Confidence 6799999999999988865 2334568999999999999999999873200 1111 111 111
Q ss_pred HHHHHHHhCCCCCCCccCCCCHHHHHHHHHHHhcCCeEEEEecccCCChh--h-HHH-HHhhCCCCCCCcEEEEecCChh
Q 040913 227 LDDIIRSLMPPSRVTVIIGEDYKLKKSILRDFLTNKKYFIALDDVCHNIE--I-WDD-LEEVLPDNQNGSRVLITVINPS 302 (425)
Q Consensus 227 ~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~kr~LlVLDdvw~~~~--~-~~~-l~~~l~~~~~gskIivTTR~~~ 302 (425)
+..++.++..... .....+...+...+...+..++.+|||||++ ... . .+. +...+... .+..+|+||+...
T Consensus 100 ~~~l~~~l~~~~~--~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~-~l~~~~~~~~~l~~l~~~~-~~~~iI~~t~~~~ 175 (384)
T 2qby_B 100 LSSLAGKLTGFSV--PKHGINLGEYIDKIKNGTRNIRAIIYLDEVD-TLVKRRGGDIVLYQLLRSD-ANISVIMISNDIN 175 (384)
T ss_dssp HHHHHHHHHCSCC--CSSSSCTHHHHHHHHHHHSSSCEEEEEETTH-HHHHSTTSHHHHHHHHTSS-SCEEEEEECSSTT
T ss_pred HHHHHHHhcCCCC--CCCCCCHHHHHHHHHHHhccCCCEEEEECHH-HhccCCCCceeHHHHhcCC-cceEEEEEECCCc
Confidence 4556666632211 1123345677788888888777799999997 321 1 222 22222222 5788999988753
No 8
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.70 E-value=2.8e-08 Score=97.13 Aligned_cols=136 Identities=14% Similarity=0.079 Sum_probs=82.8
Q ss_pred CCCCcccchhhHHHHHHHHhcC--CCCcEEEEEEecCCCchHHHHHHhhcCcccccccc---chHHH-------HHHHHH
Q 040913 165 PRLDISEFERAREEWFDLLIEG--PIGLSVVAILDSSGFDKTAFAADTYNNNHVKFYFD---CLAWI-------LDDIIR 232 (425)
Q Consensus 165 ~~~~~vGr~~~~~~l~~~L~~~--~~~~~vi~IvG~gGvGKTtLa~~v~~~~~~~~~F~---~~~wv-------~~~il~ 232 (425)
.+..++||+.+++.+.+++... ......+.|+|++|+|||||++.+++. ....+. ..+|+ ...++.
T Consensus 18 ~p~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~--~~~~~~~~~~~~~i~~~~~~~~~~~~~ 95 (386)
T 2qby_A 18 IPDELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSK--LHKKFLGKFKHVYINTRQIDTPYRVLA 95 (386)
T ss_dssp CCSCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHH--HHHHTCSSCEEEEEEHHHHCSHHHHHH
T ss_pred CCCCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHH--HHHHhcCCceEEEEECCCCCCHHHHHH
Confidence 3477999999999999988752 234568899999999999999999883 322110 11122 233444
Q ss_pred HhCCCCCCC-ccCCCCHHHHHHHHHHHhc--CCeEEEEecccCCC------hhhHHHHHhhCCC-CCCCcEEEEecCChh
Q 040913 233 SLMPPSRVT-VIIGEDYKLKKSILRDFLT--NKKYFIALDDVCHN------IEIWDDLEEVLPD-NQNGSRVLITVINPS 302 (425)
Q Consensus 233 ~l~~~~~~~-~~~~~~~~~l~~~l~~~l~--~kr~LlVLDdvw~~------~~~~~~l~~~l~~-~~~gskIivTTR~~~ 302 (425)
.+....... .....+...+...+.+.+. +++.+||||+++ . .+.+..+...+.. ...+..+|+||+...
T Consensus 96 ~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~-~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~ 174 (386)
T 2qby_A 96 DLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEID-AFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVK 174 (386)
T ss_dssp HHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHH-HHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGG
T ss_pred HHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChh-hhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCC
Confidence 443332211 1122345666667777665 458999999997 3 2334444333321 233566788887764
Q ss_pred H
Q 040913 303 L 303 (425)
Q Consensus 303 v 303 (425)
.
T Consensus 175 ~ 175 (386)
T 2qby_A 175 F 175 (386)
T ss_dssp G
T ss_pred h
Confidence 3
No 9
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=98.66 E-value=1e-07 Score=93.41 Aligned_cols=135 Identities=18% Similarity=0.119 Sum_probs=87.6
Q ss_pred CCCcccchhhHHHHHHHHhcC----CCCcEEEEEEecCCCchHHHHHHhhcCccccccc-----cc-----hHHHHHHHH
Q 040913 166 RLDISEFERAREEWFDLLIEG----PIGLSVVAILDSSGFDKTAFAADTYNNNHVKFYF-----DC-----LAWILDDII 231 (425)
Q Consensus 166 ~~~~vGr~~~~~~l~~~L~~~----~~~~~vi~IvG~gGvGKTtLa~~v~~~~~~~~~F-----~~-----~~wv~~~il 231 (425)
+..++||+.+++++.+++... ....+.+.|+|++|+|||||++.+.+...-...+ ++ ...++..++
T Consensus 16 p~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~ 95 (389)
T 1fnn_A 16 PKRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNFTAIIGEIA 95 (389)
T ss_dssp CSCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCSHHHHHHHHH
T ss_pred CCCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCCCHHHHHHHHH
Confidence 367999999999999988762 2223488999999999999999998732111001 11 112256666
Q ss_pred HHhCCCCCCCccCCCCHHHHHHHHHHHhc--CCeEEEEecccCC-ChhhHHHHHhhCCCCC----CCcEEEEecCChhH
Q 040913 232 RSLMPPSRVTVIIGEDYKLKKSILRDFLT--NKKYFIALDDVCH-NIEIWDDLEEVLPDNQ----NGSRVLITVINPSL 303 (425)
Q Consensus 232 ~~l~~~~~~~~~~~~~~~~l~~~l~~~l~--~kr~LlVLDdvw~-~~~~~~~l~~~l~~~~----~gskIivTTR~~~v 303 (425)
..+..... ....+...+...+...+. +++.+||||++.. +......+...+.... .+..||+||+....
T Consensus 96 ~~l~~~~~---~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~ 171 (389)
T 1fnn_A 96 RSLNIPFP---RRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAV 171 (389)
T ss_dssp HHTTCCCC---SSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHH
T ss_pred HHhCccCC---CCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCchH
Confidence 66654322 122355666677776664 5788999999973 3455666666554321 36778888877643
No 10
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=98.66 E-value=4.4e-08 Score=88.83 Aligned_cols=132 Identities=14% Similarity=0.054 Sum_probs=77.4
Q ss_pred CCcccchhhHHHHHHHHhcCCCCcEEEEEEecCCCchHHHHHHhhcCcccccc------ccchHHHHHHHHHHhCCCCCC
Q 040913 167 LDISEFERAREEWFDLLIEGPIGLSVVAILDSSGFDKTAFAADTYNNNHVKFY------FDCLAWILDDIIRSLMPPSRV 240 (425)
Q Consensus 167 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLa~~v~~~~~~~~~------F~~~~wv~~~il~~l~~~~~~ 240 (425)
.+++|++..++.+..++..+. ..+.+.|+|++|+||||||+.+++....... +.+.. ...+..........
T Consensus 23 ~~~~g~~~~~~~l~~~l~~~~-~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 99 (250)
T 1njg_A 23 ADVVGQEHVLTALANGLSLGR-IHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDN--CREIEQGRFVDLIE 99 (250)
T ss_dssp GGCCSCHHHHHHHHHHHHHTC-CCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSHH--HHHHHTTCCSSEEE
T ss_pred HHHhCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHH--HHHHhccCCcceEE
Confidence 468999999999999998754 2347889999999999999999873221111 11100 11111110000000
Q ss_pred CccCC-CCHHHHHHHHHHHh-----cCCeEEEEecccCC-ChhhHHHHHhhCCCCCCCcEEEEecCChh
Q 040913 241 TVIIG-EDYKLKKSILRDFL-----TNKKYFIALDDVCH-NIEIWDDLEEVLPDNQNGSRVLITVINPS 302 (425)
Q Consensus 241 ~~~~~-~~~~~l~~~l~~~l-----~~kr~LlVLDdvw~-~~~~~~~l~~~l~~~~~gskIivTTR~~~ 302 (425)
..... .....+ ..+.+.+ .+++.+||+||++. +...++.+...+.....+..+|+||+...
T Consensus 100 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~ 167 (250)
T 1njg_A 100 IDAASRTKVEDT-RDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQ 167 (250)
T ss_dssp EETTCGGGHHHH-HHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGG
T ss_pred ecCcccccHHHH-HHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChH
Confidence 00011 112222 2333332 34679999999962 45677777777765556788888887644
No 11
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=98.65 E-value=6.5e-08 Score=93.26 Aligned_cols=135 Identities=13% Similarity=0.149 Sum_probs=82.4
Q ss_pred CCCCCCCcccchhhHHHHHHHHhcCCCCcEEEEEEecCCCchHHHHHHhhcCccccccccchH---------H--HHHHH
Q 040913 162 EGQPRLDISEFERAREEWFDLLIEGPIGLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLA---------W--ILDDI 230 (425)
Q Consensus 162 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLa~~v~~~~~~~~~F~~~~---------w--v~~~i 230 (425)
+...+..++||+.+.+.|.+++..+ +++.|+|++|+|||||++++.+... .-.+++.. + ++..+
T Consensus 7 ~~~~~~~~~gR~~el~~L~~~l~~~----~~v~i~G~~G~GKT~Ll~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l 81 (350)
T 2qen_A 7 PKTRREDIFDREEESRKLEESLENY----PLTLLLGIRRVGKSSLLRAFLNERP-GILIDCRELYAERGHITREELIKEL 81 (350)
T ss_dssp CCCSGGGSCSCHHHHHHHHHHHHHC----SEEEEECCTTSSHHHHHHHHHHHSS-EEEEEHHHHHHTTTCBCHHHHHHHH
T ss_pred CCCChHhcCChHHHHHHHHHHHhcC----CeEEEECCCcCCHHHHHHHHHHHcC-cEEEEeecccccccCCCHHHHHHHH
Confidence 3445677999999999999998763 6899999999999999999987421 00112111 0 12333
Q ss_pred HHHhCCC------------C-CC-CccCCCCHHHHHHHHHHHhcC-CeEEEEecccCCCh---------hhHHHHHhhCC
Q 040913 231 IRSLMPP------------S-RV-TVIIGEDYKLKKSILRDFLTN-KKYFIALDDVCHNI---------EIWDDLEEVLP 286 (425)
Q Consensus 231 l~~l~~~------------~-~~-~~~~~~~~~~l~~~l~~~l~~-kr~LlVLDdvw~~~---------~~~~~l~~~l~ 286 (425)
...+... . .. ......+...+...+....+. ++++|||||++ .. +.+..+.....
T Consensus 82 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~-~~~~~~~~~~~~~~~~L~~~~~ 160 (350)
T 2qen_A 82 QSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQ-YLRFYGSRGGKELLALFAYAYD 160 (350)
T ss_dssp HHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGG-GGGGBTTTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHH-HHhccCccchhhHHHHHHHHHH
Confidence 3333220 0 00 011124556677777666653 48999999997 42 22333433322
Q ss_pred CCCCCcEEEEecCChhH
Q 040913 287 DNQNGSRVLITVINPSL 303 (425)
Q Consensus 287 ~~~~gskIivTTR~~~v 303 (425)
. .++.++|+|++....
T Consensus 161 ~-~~~~~~il~g~~~~~ 176 (350)
T 2qen_A 161 S-LPNLKIILTGSEVGL 176 (350)
T ss_dssp H-CTTEEEEEEESSHHH
T ss_pred h-cCCeEEEEECCcHHH
Confidence 2 247889999887653
No 12
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=98.62 E-value=5.8e-08 Score=94.99 Aligned_cols=132 Identities=14% Similarity=-0.012 Sum_probs=82.6
Q ss_pred CCCcccchhhHHHHHHHHhcC--CCCcEEEEEEecCCCchHHHHHHhhcCccc-------cccc---cch-----HHHHH
Q 040913 166 RLDISEFERAREEWFDLLIEG--PIGLSVVAILDSSGFDKTAFAADTYNNNHV-------KFYF---DCL-----AWILD 228 (425)
Q Consensus 166 ~~~~vGr~~~~~~l~~~L~~~--~~~~~vi~IvG~gGvGKTtLa~~v~~~~~~-------~~~F---~~~-----~wv~~ 228 (425)
+..++||+.+++.+.+++... ....+.+.|+|++|+||||||+.+++...- ...| ++. .-++.
T Consensus 18 p~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 97 (387)
T 2v1u_A 18 PDVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVAS 97 (387)
T ss_dssp CSCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHHH
Confidence 477999999999999998643 334667889999999999999999873210 1111 110 11156
Q ss_pred HHHHHhCCCCCCCccCCCCHHHHHHHHHHHhc--CCeEEEEecccCCChh----hHHHHHhhC---CCC--CCCcEEEEe
Q 040913 229 DIIRSLMPPSRVTVIIGEDYKLKKSILRDFLT--NKKYFIALDDVCHNIE----IWDDLEEVL---PDN--QNGSRVLIT 297 (425)
Q Consensus 229 ~il~~l~~~~~~~~~~~~~~~~l~~~l~~~l~--~kr~LlVLDdvw~~~~----~~~~l~~~l---~~~--~~gskIivT 297 (425)
.++.++..... ....+...+...+...+. +++.+||||++. ... ..+.+...+ ... ..+..+|.|
T Consensus 98 ~l~~~l~~~~~---~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~-~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~ 173 (387)
T 2v1u_A 98 AIAEAVGVRVP---FTGLSVGEVYERLVKRLSRLRGIYIIVLDEID-FLPKRPGGQDLLYRITRINQELGDRVWVSLVGI 173 (387)
T ss_dssp HHHHHHSCCCC---SSCCCHHHHHHHHHHHHTTSCSEEEEEEETTT-HHHHSTTHHHHHHHHHHGGGCC-----CEEEEE
T ss_pred HHHHHhCCCCC---CCCCCHHHHHHHHHHHHhccCCeEEEEEccHh-hhcccCCCChHHHhHhhchhhcCCCceEEEEEE
Confidence 67777755432 223345666777777773 568999999997 322 222332222 111 345677888
Q ss_pred cCCh
Q 040913 298 VINP 301 (425)
Q Consensus 298 TR~~ 301 (425)
|+..
T Consensus 174 t~~~ 177 (387)
T 2v1u_A 174 TNSL 177 (387)
T ss_dssp CSCS
T ss_pred ECCC
Confidence 7765
No 13
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=98.59 E-value=1.3e-07 Score=84.49 Aligned_cols=121 Identities=11% Similarity=0.030 Sum_probs=75.6
Q ss_pred CCCcccchhhHHHHHHHHhcCCCCcEEEEEEecCCCchHHHHHHhhcCccccccccchHHHHHHHHHHhCCCCCCCccCC
Q 040913 166 RLDISEFERAREEWFDLLIEGPIGLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWILDDIIRSLMPPSRVTVIIG 245 (425)
Q Consensus 166 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~~il~~l~~~~~~~~~~~ 245 (425)
..+++|++..++.+.+++.... .+.+.|+|++|+|||+||+.+++. .........++ .+. ....
T Consensus 16 ~~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~l~~~l~~~--~~~~~~~~~~~------~~~------~~~~ 79 (226)
T 2chg_A 16 LDEVVGQDEVIQRLKGYVERKN--IPHLLFSGPPGTGKTATAIALARD--LFGENWRDNFI------EMN------ASDE 79 (226)
T ss_dssp GGGCCSCHHHHHHHHHHHHTTC--CCCEEEECSTTSSHHHHHHHHHHH--HHGGGGGGGEE------EEE------TTCT
T ss_pred HHHHcCcHHHHHHHHHHHhCCC--CCeEEEECCCCCCHHHHHHHHHHH--HhccccccceE------Eec------cccc
Confidence 3468999999999999998764 233889999999999999998872 21110000000 000 0011
Q ss_pred CCHHHHHHHHHHHh------cCCeEEEEecccCC-ChhhHHHHHhhCCCCCCCcEEEEecCChh
Q 040913 246 EDYKLKKSILRDFL------TNKKYFIALDDVCH-NIEIWDDLEEVLPDNQNGSRVLITVINPS 302 (425)
Q Consensus 246 ~~~~~l~~~l~~~l------~~kr~LlVLDdvw~-~~~~~~~l~~~l~~~~~gskIivTTR~~~ 302 (425)
.....+...+.... .+++.+||+||+.. .....+.+...+.....++++|+||+...
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~ 143 (226)
T 2chg_A 80 RGIDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVS 143 (226)
T ss_dssp TCHHHHHHHHHHHHTSCCSTTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGG
T ss_pred cChHHHHHHHHHHhcccCCCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChh
Confidence 23334444444443 25789999999972 23455666665554455788888887653
No 14
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=98.51 E-value=1.1e-07 Score=91.82 Aligned_cols=45 Identities=18% Similarity=0.144 Sum_probs=38.6
Q ss_pred CCCCCCcccchhhHHHHHHHHhcCCCCcEEEEEEecCCCchHHHHHHhhcC
Q 040913 163 GQPRLDISEFERAREEWFDLLIEGPIGLSVVAILDSSGFDKTAFAADTYNN 213 (425)
Q Consensus 163 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLa~~v~~~ 213 (425)
...+..++||+.+.+.|.+ +.. +++.|+|++|+|||||++.+.+.
T Consensus 9 ~~~~~~~~gR~~el~~L~~-l~~-----~~v~i~G~~G~GKT~L~~~~~~~ 53 (357)
T 2fna_A 9 KDNRKDFFDREKEIEKLKG-LRA-----PITLVLGLRRTGKSSIIKIGINE 53 (357)
T ss_dssp CCSGGGSCCCHHHHHHHHH-TCS-----SEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCHHHhcChHHHHHHHHH-hcC-----CcEEEECCCCCCHHHHHHHHHHh
Confidence 3456779999999999999 654 58999999999999999999874
No 15
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.34 E-value=1e-06 Score=83.84 Aligned_cols=118 Identities=13% Similarity=0.115 Sum_probs=73.5
Q ss_pred CCcccchhhHHHHHHHHhcCCCCcEEEEEEecCCCchHHHHHHhhcCccccc-cccchHHHHHHHHHHhCCCCCCCccCC
Q 040913 167 LDISEFERAREEWFDLLIEGPIGLSVVAILDSSGFDKTAFAADTYNNNHVKF-YFDCLAWILDDIIRSLMPPSRVTVIIG 245 (425)
Q Consensus 167 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLa~~v~~~~~~~~-~F~~~~wv~~~il~~l~~~~~~~~~~~ 245 (425)
.+++|++..++.+.+++..+. .+.+.++|++|+||||+|+.+.+. ... .+.. .+ +.... ...
T Consensus 21 ~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKt~la~~l~~~--l~~~~~~~-~~--------~~~~~----~~~ 83 (323)
T 1sxj_B 21 SDIVGNKETIDRLQQIAKDGN--MPHMIISGMPGIGKTTSVHCLAHE--LLGRSYAD-GV--------LELNA----SDD 83 (323)
T ss_dssp GGCCSCTHHHHHHHHHHHSCC--CCCEEEECSTTSSHHHHHHHHHHH--HHGGGHHH-HE--------EEECT----TSC
T ss_pred HHHHCCHHHHHHHHHHHHcCC--CCeEEEECcCCCCHHHHHHHHHHH--hcCCcccC-CE--------EEecC----ccc
Confidence 568999999999999998765 223889999999999999999873 211 1100 00 00000 011
Q ss_pred CCHHHHHHHHHHHh-------cCCeEEEEecccCC-ChhhHHHHHhhCCCCCCCcEEEEecCCh
Q 040913 246 EDYKLKKSILRDFL-------TNKKYFIALDDVCH-NIEIWDDLEEVLPDNQNGSRVLITVINP 301 (425)
Q Consensus 246 ~~~~~l~~~l~~~l-------~~kr~LlVLDdvw~-~~~~~~~l~~~l~~~~~gskIivTTR~~ 301 (425)
.....+...+.... .+++.+||+||++. +...++.+...+.....++++|+||+..
T Consensus 84 ~~~~~i~~~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~ 147 (323)
T 1sxj_B 84 RGIDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQS 147 (323)
T ss_dssp CSHHHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCG
T ss_pred cChHHHHHHHHHHHhccccCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCCh
Confidence 23344444444433 45689999999972 2345555555554444577888888664
No 16
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.24 E-value=1.7e-06 Score=82.57 Aligned_cols=121 Identities=13% Similarity=0.079 Sum_probs=72.6
Q ss_pred CCCcccchhhHHHHHHHHhcCCCCcEEEEEEecCCCchHHHHHHhhcCccccccccchHHHHHHHHHHhCCCCCCCccCC
Q 040913 166 RLDISEFERAREEWFDLLIEGPIGLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWILDDIIRSLMPPSRVTVIIG 245 (425)
Q Consensus 166 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~~il~~l~~~~~~~~~~~ 245 (425)
-.+++|++..++.+.+++..+. .+.+.++|++|+||||+|+.+++. +........++ .+ ... ..
T Consensus 24 ~~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~la~~l~~~--l~~~~~~~~~~------~~--~~~----~~ 87 (327)
T 1iqp_A 24 LDDIVGQEHIVKRLKHYVKTGS--MPHLLFAGPPGVGKTTAALALARE--LFGENWRHNFL------EL--NAS----DE 87 (327)
T ss_dssp TTTCCSCHHHHHHHHHHHHHTC--CCEEEEESCTTSSHHHHHHHHHHH--HHGGGHHHHEE------EE--ETT----CH
T ss_pred HHHhhCCHHHHHHHHHHHHcCC--CCeEEEECcCCCCHHHHHHHHHHH--hcCCcccCceE------Ee--ecc----cc
Confidence 3468999999999999998764 334889999999999999999873 21110000000 00 000 00
Q ss_pred CCHHHHHHHHHHHh------cCCeEEEEecccCC-ChhhHHHHHhhCCCCCCCcEEEEecCChh
Q 040913 246 EDYKLKKSILRDFL------TNKKYFIALDDVCH-NIEIWDDLEEVLPDNQNGSRVLITVINPS 302 (425)
Q Consensus 246 ~~~~~l~~~l~~~l------~~kr~LlVLDdvw~-~~~~~~~l~~~l~~~~~gskIivTTR~~~ 302 (425)
.....+...+.... .+++.+||+||+.. +...++.+...+.....++++|+||....
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~ 151 (327)
T 1iqp_A 88 RGINVIREKVKEFARTKPIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSS 151 (327)
T ss_dssp HHHHTTHHHHHHHHHSCCGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGG
T ss_pred CchHHHHHHHHHHHhhCCcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCcc
Confidence 00111112222221 26788999999973 33566666666654455788888887643
No 17
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.17 E-value=5.5e-06 Score=71.95 Aligned_cols=46 Identities=11% Similarity=0.064 Sum_probs=38.9
Q ss_pred CCCcccchhhHHHHHHHHhcCCCCcEEEEEEecCCCchHHHHHHhhcC
Q 040913 166 RLDISEFERAREEWFDLLIEGPIGLSVVAILDSSGFDKTAFAADTYNN 213 (425)
Q Consensus 166 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLa~~v~~~ 213 (425)
-..++|++..++++.+.+.... .+.+.|+|++|+|||+||+.+.+.
T Consensus 21 ~~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 21 LDPVIGRDEEIRRTIQVLQRRT--KNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp SCCCCSCHHHHHHHHHHHTSSS--SCEEEEECCTTSCHHHHHHHHHHH
T ss_pred ccccccchHHHHHHHHHHhcCC--CCceEEECCCCCCHHHHHHHHHHH
Confidence 3568999999999999987743 455789999999999999998873
No 18
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.00 E-value=4e-05 Score=74.39 Aligned_cols=132 Identities=14% Similarity=0.059 Sum_probs=73.9
Q ss_pred CCcccchhhHHHHHHHHhcCCCCcEEEEEEecCCCchHHHHHHhhcCccccc------cccchHHHHHHHHHHhCCCCC-
Q 040913 167 LDISEFERAREEWFDLLIEGPIGLSVVAILDSSGFDKTAFAADTYNNNHVKF------YFDCLAWILDDIIRSLMPPSR- 239 (425)
Q Consensus 167 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLa~~v~~~~~~~~------~F~~~~wv~~~il~~l~~~~~- 239 (425)
.+++|++..++.+.+.+..+. ..+.+.|+|++|+||||+|+.+.+.-.... ++.+... ..+...-.....
T Consensus 16 ~~~vg~~~~~~~L~~~l~~~~-~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 92 (373)
T 1jr3_A 16 ADVVGQEHVLTALANGLSLGR-IHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNC--REIEQGRFVDLIE 92 (373)
T ss_dssp TTSCSCHHHHHHHHHHHHHTC-CCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSSHHH--HHHHTSCCSSCEE
T ss_pred hhccCcHHHHHHHHHHHHhCC-CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHH--HHHhccCCCceEE
Confidence 459999999999999997654 234678999999999999999876321111 1111111 111110000000
Q ss_pred ---CCccCCCCHHHHHHHHHHH-hcCCeEEEEecccCC-ChhhHHHHHhhCCCCCCCcEEEEecCCh
Q 040913 240 ---VTVIIGEDYKLKKSILRDF-LTNKKYFIALDDVCH-NIEIWDDLEEVLPDNQNGSRVLITVINP 301 (425)
Q Consensus 240 ---~~~~~~~~~~~l~~~l~~~-l~~kr~LlVLDdvw~-~~~~~~~l~~~l~~~~~gskIivTTR~~ 301 (425)
.......+...+...+... ..+++.+||+||+.. +....+.+...+.....+..+|++|...
T Consensus 93 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~ 159 (373)
T 1jr3_A 93 IDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDP 159 (373)
T ss_dssp EETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCG
T ss_pred ecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCCh
Confidence 0001112233333222211 135678999999962 3456666766665545567777777654
No 19
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=97.97 E-value=1.2e-05 Score=75.28 Aligned_cols=50 Identities=16% Similarity=0.081 Sum_probs=39.5
Q ss_pred CCCCCCcccchhhHHHHHHHHhcC-----------CCCcEEEEEEecCCCchHHHHHHhhc
Q 040913 163 GQPRLDISEFERAREEWFDLLIEG-----------PIGLSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 163 ~~~~~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
...-.+++|.+..++.|.+.+... -....-+.|+|++|+|||+||+.+.+
T Consensus 13 ~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~ 73 (285)
T 3h4m_A 13 NVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVAT 73 (285)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHH
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHH
Confidence 344567999999999998877532 12345688999999999999999988
No 20
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=97.93 E-value=1.9e-05 Score=75.36 Aligned_cols=116 Identities=15% Similarity=0.112 Sum_probs=74.1
Q ss_pred CCCcccchhhHHHHHHHHhcCCCCcEEEEEEecCCCchHHHHHHhhcCccccccccchHHHHHHHHHHhCCCCCCCccCC
Q 040913 166 RLDISEFERAREEWFDLLIEGPIGLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWILDDIIRSLMPPSRVTVIIG 245 (425)
Q Consensus 166 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~~il~~l~~~~~~~~~~~ 245 (425)
-.+++|.+..++.+.+++..+. ..+++-+.|++|+|||++|+.+.+ .....|-. + ....
T Consensus 25 ~~~ivg~~~~~~~l~~~l~~~~-~~~~~L~~G~~G~GKT~la~~la~--~l~~~~~~-----------i-------~~~~ 83 (324)
T 3u61_B 25 IDECILPAFDKETFKSITSKGK-IPHIILHSPSPGTGKTTVAKALCH--DVNADMMF-----------V-------NGSD 83 (324)
T ss_dssp TTTSCCCHHHHHHHHHHHHTTC-CCSEEEECSSTTSSHHHHHHHHHH--HTTEEEEE-----------E-------ETTT
T ss_pred HHHHhCcHHHHHHHHHHHHcCC-CCeEEEeeCcCCCCHHHHHHHHHH--HhCCCEEE-----------E-------cccc
Confidence 4578999999999999998654 345677889999999999999987 33222210 0 1111
Q ss_pred CCHHHHHHHHHHHhc-----CCeEEEEecccCC-C-hhhHHHHHhhCCCCCCCcEEEEecCChh
Q 040913 246 EDYKLKKSILRDFLT-----NKKYFIALDDVCH-N-IEIWDDLEEVLPDNQNGSRVLITVINPS 302 (425)
Q Consensus 246 ~~~~~l~~~l~~~l~-----~kr~LlVLDdvw~-~-~~~~~~l~~~l~~~~~gskIivTTR~~~ 302 (425)
.....+...+.+... +++.+|++||+.. . .+..+.+...+.....+.++|+||....
T Consensus 84 ~~~~~i~~~~~~~~~~~~~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~ 147 (324)
T 3u61_B 84 CKIDFVRGPLTNFASAASFDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNID 147 (324)
T ss_dssp CCHHHHHTHHHHHHHBCCCSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGG
T ss_pred cCHHHHHHHHHHHHhhcccCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCcc
Confidence 224444444444433 3788999999973 2 3345555554433334567888876644
No 21
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=97.85 E-value=1.7e-05 Score=75.10 Aligned_cols=123 Identities=11% Similarity=0.017 Sum_probs=71.1
Q ss_pred CCcccchhhHHHHHHHHhcCCCCcEEEEEEecCCCchHHHHHHhhcCccccccccchHHHHHHHHHHhCCCCCCCccCCC
Q 040913 167 LDISEFERAREEWFDLLIEGPIGLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWILDDIIRSLMPPSRVTVIIGE 246 (425)
Q Consensus 167 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~~il~~l~~~~~~~~~~~~ 246 (425)
.+++|++..++.+.+++..+. .+.+.++|++|+||||+|+.+.+.-. ...+... ++ .+..... ....
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKt~la~~l~~~l~-~~~~~~~-~~------~~~~~~~---~~~~ 83 (319)
T 2chq_A 17 DEVVGQDEVIQRLKGYVERKN--IPHLLFSGPPGTGKTATAIALARDLF-GENWRDN-FI------EMNASDE---RGID 83 (319)
T ss_dssp GGSCSCHHHHHHHHTTTTTTC--CCCEEEESSSSSSHHHHHHHHHHHHH-TTCHHHH-CE------EEETTST---TCTT
T ss_pred HHHhCCHHHHHHHHHHHhCCC--CCeEEEECcCCcCHHHHHHHHHHHhc-CCcccCC-eE------EEeCccc---cChH
Confidence 458999999999998887654 23388999999999999999887310 1110000 00 0000000 0011
Q ss_pred CHHHHHHHHHHH--h-cCCeEEEEecccCC-ChhhHHHHHhhCCCCCCCcEEEEecCChh
Q 040913 247 DYKLKKSILRDF--L-TNKKYFIALDDVCH-NIEIWDDLEEVLPDNQNGSRVLITVINPS 302 (425)
Q Consensus 247 ~~~~l~~~l~~~--l-~~kr~LlVLDdvw~-~~~~~~~l~~~l~~~~~gskIivTTR~~~ 302 (425)
........+... + .+++.+||+|++.. +....+.+...+.....++++|+||....
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~ 143 (319)
T 2chq_A 84 VVRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVS 143 (319)
T ss_dssp TSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGG
T ss_pred HHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChh
Confidence 112222222211 1 25688999999962 33455666666655556778888876643
No 22
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=97.80 E-value=7.3e-05 Score=68.74 Aligned_cols=48 Identities=17% Similarity=0.104 Sum_probs=36.1
Q ss_pred CCCCcccchhhHHHHHHHHh---cCC-------CCcEEEEEEecCCCchHHHHHHhhc
Q 040913 165 PRLDISEFERAREEWFDLLI---EGP-------IGLSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 165 ~~~~~vGr~~~~~~l~~~L~---~~~-------~~~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
.-.+++|.+..++.|.+++. ..+ ...+-+.++|++|+|||+||+.+.+
T Consensus 4 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~ 61 (262)
T 2qz4_A 4 SFKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVAT 61 (262)
T ss_dssp CTTSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHH
T ss_pred CHHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 34678999988888766543 221 2345577999999999999999988
No 23
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.79 E-value=8.6e-06 Score=68.41 Aligned_cols=110 Identities=10% Similarity=-0.060 Sum_probs=62.5
Q ss_pred CcccchhhHHHHHHHHhcCCCCcEEEEEEecCCCchHHHHHHhhcCcc-ccccc--cchHHHHHHHHHHhCCCCCCCccC
Q 040913 168 DISEFERAREEWFDLLIEGPIGLSVVAILDSSGFDKTAFAADTYNNNH-VKFYF--DCLAWILDDIIRSLMPPSRVTVII 244 (425)
Q Consensus 168 ~~vGr~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLa~~v~~~~~-~~~~F--~~~~wv~~~il~~l~~~~~~~~~~ 244 (425)
.++|+...+.++.+.+..-.....-|-|+|.+|+|||++|+.+++... ....| ++.. ...
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v~~~~~-----------------~~~ 64 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFVYRELT-----------------PDN 64 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCEEEECC-----------------TTT
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEEEECCC-----------------CCc
Confidence 578999999999888764222223467999999999999999988421 12222 1100 000
Q ss_pred CCCHHHHHHHHHHHhcCCeEEEEecccCC-ChhhHHHHHhhCCCCCCCcEEEEecCC
Q 040913 245 GEDYKLKKSILRDFLTNKKYFIALDDVCH-NIEIWDDLEEVLPDNQNGSRVLITVIN 300 (425)
Q Consensus 245 ~~~~~~l~~~l~~~l~~kr~LlVLDdvw~-~~~~~~~l~~~l~~~~~gskIivTTR~ 300 (425)
..... ..+.. ...-.|+||++.. +......+...+.......++|.||..
T Consensus 65 ~~~~~---~~~~~---a~~g~l~ldei~~l~~~~q~~Ll~~l~~~~~~~~~I~~t~~ 115 (145)
T 3n70_A 65 APQLN---DFIAL---AQGGTLVLSHPEHLTREQQYHLVQLQSQEHRPFRLIGIGDT 115 (145)
T ss_dssp SSCHH---HHHHH---HTTSCEEEECGGGSCHHHHHHHHHHHHSSSCSSCEEEEESS
T ss_pred chhhh---cHHHH---cCCcEEEEcChHHCCHHHHHHHHHHHhhcCCCEEEEEECCc
Confidence 11111 11111 1335789999963 234445555555443445677777754
No 24
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=97.75 E-value=4.9e-05 Score=72.37 Aligned_cols=102 Identities=10% Similarity=0.031 Sum_probs=65.0
Q ss_pred CcccchhhHHHHHHHHhcC--CCCcEEEEEEecCCCchHHHHHHhhcCccccc------cccc---hH-------HHHHH
Q 040913 168 DISEFERAREEWFDLLIEG--PIGLSVVAILDSSGFDKTAFAADTYNNNHVKF------YFDC---LA-------WILDD 229 (425)
Q Consensus 168 ~~vGr~~~~~~l~~~L~~~--~~~~~vi~IvG~gGvGKTtLa~~v~~~~~~~~------~F~~---~~-------wv~~~ 229 (425)
.+.||+++.++|...|... ....+.+-|+|++|+|||++++.+.+.-.... .|.. -+ -++..
T Consensus 21 ~L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~ 100 (318)
T 3te6_A 21 LLKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEK 100 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHH
Confidence 3789999999998887753 33567788999999999999999988421100 1221 00 11677
Q ss_pred HHHHhCCCCCCCccCCCCHHHHHHHHHHH--hcCCeEEEEecccC
Q 040913 230 IIRSLMPPSRVTVIIGEDYKLKKSILRDF--LTNKKYFIALDDVC 272 (425)
Q Consensus 230 il~~l~~~~~~~~~~~~~~~~l~~~l~~~--l~~kr~LlVLDdvw 272 (425)
|.+++..... ......+.+...+... -.++.++|+||++.
T Consensus 101 I~~~L~g~~~---~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d 142 (318)
T 3te6_A 101 IWFAISKENL---CGDISLEALNFYITNVPKAKKRKTLILIQNPE 142 (318)
T ss_dssp HHHHHSCCC-----CCCCHHHHHHHHHHSCGGGSCEEEEEEECCS
T ss_pred HHHHhcCCCC---CchHHHHHHHHHHHHhhhccCCceEEEEecHH
Confidence 8888854321 1122333444333332 24678999999996
No 25
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=97.72 E-value=0.00016 Score=68.96 Aligned_cols=55 Identities=18% Similarity=0.166 Sum_probs=41.2
Q ss_pred CCCCCcccchhhHHHHHHHHhc----------CCCCcEEEEEEecCCCchHHHHHHhhcCccccccc
Q 040913 164 QPRLDISEFERAREEWFDLLIE----------GPIGLSVVAILDSSGFDKTAFAADTYNNNHVKFYF 220 (425)
Q Consensus 164 ~~~~~~vGr~~~~~~l~~~L~~----------~~~~~~vi~IvG~gGvGKTtLa~~v~~~~~~~~~F 220 (425)
..-.+++|.+..++.|.+.+.. .....+-+.++|++|+|||+||+.+.+ .....|
T Consensus 15 ~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~--~~~~~~ 79 (322)
T 3eie_A 15 VKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVAT--EANSTF 79 (322)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHH--HHTCEE
T ss_pred CCHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHH--HHCCCE
Confidence 4446789999999999887731 112345688999999999999999988 444343
No 26
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=97.72 E-value=2e-05 Score=75.14 Aligned_cols=47 Identities=17% Similarity=0.116 Sum_probs=37.7
Q ss_pred CCCcccchhhHHHHHHHHhcC---CCCcEEEEEEecCCCchHHHHHHhhc
Q 040913 166 RLDISEFERAREEWFDLLIEG---PIGLSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 166 ~~~~vGr~~~~~~l~~~L~~~---~~~~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
-.+++|++..++.+..++... ......+.|+|++|+|||+||+.+++
T Consensus 11 ~~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~ 60 (324)
T 1hqc_A 11 LDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAH 60 (324)
T ss_dssp TTTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHH
T ss_pred HHHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHH
Confidence 457999999999988877631 12345678999999999999999987
No 27
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.66 E-value=4.7e-05 Score=63.67 Aligned_cols=47 Identities=17% Similarity=-0.027 Sum_probs=33.4
Q ss_pred CCcccchhhHHHHHHHHhcCCCCcEEEEEEecCCCchHHHHHHhhcC
Q 040913 167 LDISEFERAREEWFDLLIEGPIGLSVVAILDSSGFDKTAFAADTYNN 213 (425)
Q Consensus 167 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLa~~v~~~ 213 (425)
.+++|.+..++++.+.+..-.....-|-|+|.+|+|||++|+.+++.
T Consensus 4 ~~~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 4 FDKLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp ----CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCT
T ss_pred cCceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHh
Confidence 35789999998888877642111233678999999999999999984
No 28
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=97.65 E-value=0.00025 Score=65.85 Aligned_cols=46 Identities=20% Similarity=0.099 Sum_probs=34.9
Q ss_pred CCcccchhhHHHHHH-------HHhcC-CCCcEEEEEEecCCCchHHHHHHhhc
Q 040913 167 LDISEFERAREEWFD-------LLIEG-PIGLSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 167 ~~~vGr~~~~~~l~~-------~L~~~-~~~~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
..++|.....++++. .+... ....+.+.|+|++|+|||+||+.+.+
T Consensus 33 ~~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~ 86 (272)
T 1d2n_A 33 NGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAE 86 (272)
T ss_dssp TCCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHH
T ss_pred cCCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHH
Confidence 457888777776666 33322 34567888999999999999999988
No 29
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.65 E-value=0.00012 Score=69.30 Aligned_cols=96 Identities=16% Similarity=0.117 Sum_probs=58.6
Q ss_pred CCCCCcccchhhHHHHHHHHhcC-----------CCCcEEEEEEecCCCchHHHHHHhhcCccccccccchHHHHHHHHH
Q 040913 164 QPRLDISEFERAREEWFDLLIEG-----------PIGLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWILDDIIR 232 (425)
Q Consensus 164 ~~~~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~IvG~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~~il~ 232 (425)
..-.+++|.+..++.|.+.+... -...+.+.++|++|+|||+||+.+.+ .....|-..- ..++..
T Consensus 12 ~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~--~~~~~~i~v~--~~~l~~ 87 (301)
T 3cf0_A 12 VTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIAN--ECQANFISIK--GPELLT 87 (301)
T ss_dssp CCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHH--HTTCEEEEEC--HHHHHH
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHH--HhCCCEEEEE--hHHHHh
Confidence 34456899999998888776531 12356788999999999999999998 4433331100 112222
Q ss_pred HhCCCCCCCccCCCCHHHHHHHHHHHhcCCeEEEEecccC
Q 040913 233 SLMPPSRVTVIIGEDYKLKKSILRDFLTNKKYFIALDDVC 272 (425)
Q Consensus 233 ~l~~~~~~~~~~~~~~~~l~~~l~~~l~~kr~LlVLDdvw 272 (425)
...... ...+...+.........+|+||++.
T Consensus 88 ~~~g~~---------~~~~~~~f~~a~~~~p~il~iDEid 118 (301)
T 3cf0_A 88 MWFGES---------EANVREIFDKARQAAPCVLFFDELD 118 (301)
T ss_dssp HHHTTC---------TTHHHHHHHHHHHTCSEEEEECSTT
T ss_pred hhcCch---------HHHHHHHHHHHHhcCCeEEEEEChH
Confidence 221111 1222333333334577999999995
No 30
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.65 E-value=0.00013 Score=70.11 Aligned_cols=46 Identities=11% Similarity=0.045 Sum_probs=38.5
Q ss_pred CCCcccchhhHHHHHHHHhcCCCCcEEEEEEecCCCchHHHHHHhhcC
Q 040913 166 RLDISEFERAREEWFDLLIEGPIGLSVVAILDSSGFDKTAFAADTYNN 213 (425)
Q Consensus 166 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLa~~v~~~ 213 (425)
-.+++|++..++.+..++..+.. +.+.++|++|+||||+|+.+.+.
T Consensus 36 ~~~i~g~~~~~~~l~~~l~~~~~--~~~ll~G~~G~GKT~la~~la~~ 81 (353)
T 1sxj_D 36 LDEVTAQDHAVTVLKKTLKSANL--PHMLFYGPPGTGKTSTILALTKE 81 (353)
T ss_dssp TTTCCSCCTTHHHHHHHTTCTTC--CCEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHhhCCHHHHHHHHHHHhcCCC--CEEEEECCCCCCHHHHHHHHHHH
Confidence 45689999999999999887642 23789999999999999998873
No 31
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=97.62 E-value=0.00047 Score=65.86 Aligned_cols=49 Identities=16% Similarity=0.164 Sum_probs=38.1
Q ss_pred CCCCCcccchhhHHHHHHHHhcC----------CCCcEEEEEEecCCCchHHHHHHhhc
Q 040913 164 QPRLDISEFERAREEWFDLLIEG----------PIGLSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 164 ~~~~~~vGr~~~~~~l~~~L~~~----------~~~~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
+.-.+++|.+..++.|.+.+... ....+-|.++|++|+|||+||+.+.+
T Consensus 9 ~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~ 67 (322)
T 1xwi_A 9 VKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVAT 67 (322)
T ss_dssp CCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHH
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHH
Confidence 44467899999999888776421 12346788999999999999999998
No 32
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=97.61 E-value=0.00015 Score=72.44 Aligned_cols=114 Identities=14% Similarity=0.089 Sum_probs=64.6
Q ss_pred CCCcccchhhH---HHHHHHHhcCCCCcEEEEEEecCCCchHHHHHHhhcCccccccccchHHHHHHHHHHhCCCCCCCc
Q 040913 166 RLDISEFERAR---EEWFDLLIEGPIGLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWILDDIIRSLMPPSRVTV 242 (425)
Q Consensus 166 ~~~~vGr~~~~---~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~~il~~l~~~~~~~~ 242 (425)
-.+++|.+..+ ..+...+..+. .+.+.++|++|+||||||+.+.+ .....|... .
T Consensus 25 l~~ivGq~~~~~~~~~L~~~i~~~~--~~~vLL~GppGtGKTtlAr~ia~--~~~~~f~~l------------------~ 82 (447)
T 3pvs_A 25 LAQYIGQQHLLAAGKPLPRAIEAGH--LHSMILWGPPGTGKTTLAEVIAR--YANADVERI------------------S 82 (447)
T ss_dssp TTTCCSCHHHHSTTSHHHHHHHHTC--CCEEEEECSTTSSHHHHHHHHHH--HTTCEEEEE------------------E
T ss_pred HHHhCCcHHHHhchHHHHHHHHcCC--CcEEEEECCCCCcHHHHHHHHHH--HhCCCeEEE------------------E
Confidence 45689988887 67777777765 46788999999999999999998 444444210 0
Q ss_pred cCCCCHHHHHHHHHHH----hcCCeEEEEecccCC-ChhhHHHHHhhCCCCCCCcEEEEecCChh
Q 040913 243 IIGEDYKLKKSILRDF----LTNKKYFIALDDVCH-NIEIWDDLEEVLPDNQNGSRVLITVINPS 302 (425)
Q Consensus 243 ~~~~~~~~l~~~l~~~----l~~kr~LlVLDdvw~-~~~~~~~l~~~l~~~~~gskIivTTR~~~ 302 (425)
........+...+... ..+++.+|++|++.. +....+.+...+.. +.-.-|..||.+..
T Consensus 83 a~~~~~~~ir~~~~~a~~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~-~~v~lI~att~n~~ 146 (447)
T 3pvs_A 83 AVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIED-GTITFIGATTENPS 146 (447)
T ss_dssp TTTCCHHHHHHHHHHHHHHHHTTCCEEEEEETTTCC------CCHHHHHT-TSCEEEEEESSCGG
T ss_pred eccCCHHHHHHHHHHHHHhhhcCCCcEEEEeChhhhCHHHHHHHHHHHhc-CceEEEecCCCCcc
Confidence 0111222222222221 246789999999962 22334444444433 11222334555543
No 33
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.54 E-value=8.6e-05 Score=64.40 Aligned_cols=42 Identities=19% Similarity=0.038 Sum_probs=29.1
Q ss_pred chhhHHHHHHHHhcCC-CCcEEEEEEecCCCchHHHHHHhhcC
Q 040913 172 FERAREEWFDLLIEGP-IGLSVVAILDSSGFDKTAFAADTYNN 213 (425)
Q Consensus 172 r~~~~~~l~~~L~~~~-~~~~vi~IvG~gGvGKTtLa~~v~~~ 213 (425)
.....+.+.+++..-. .....+.|+|++|+|||||++.+++.
T Consensus 19 ~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~ 61 (180)
T 3ec2_A 19 QNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKA 61 (180)
T ss_dssp HHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 3344444455554322 23567899999999999999999873
No 34
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.53 E-value=0.00019 Score=69.14 Aligned_cols=44 Identities=11% Similarity=-0.034 Sum_probs=35.5
Q ss_pred CCcccchhhHHHHHHHH-hcCCCCcEEEEEEecCCCchHHHHHHhhc
Q 040913 167 LDISEFERAREEWFDLL-IEGPIGLSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 167 ~~~vGr~~~~~~l~~~L-~~~~~~~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
.+++|.+...+.+.+++ ..+. ... +.|+|+.|+||||+++.+.+
T Consensus 14 ~~~vg~~~~~~~l~~~~~~~~~-~~~-~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 14 NALSHNEELTNFLKSLSDQPRD-LPH-LLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp GGCCSCHHHHHHHHTTTTCTTC-CCC-EEEECSTTSSHHHHHHTHHH
T ss_pred HHhcCCHHHHHHHHHHHhhCCC-CCe-EEEECCCCCCHHHHHHHHHH
Confidence 45889999998888888 4433 233 89999999999999998776
No 35
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=97.50 E-value=0.0001 Score=70.76 Aligned_cols=47 Identities=13% Similarity=0.023 Sum_probs=38.8
Q ss_pred CCCcccchhhHHHHHHHHhcC---CCCcEEEEEEecCCCchHHHHHHhhc
Q 040913 166 RLDISEFERAREEWFDLLIEG---PIGLSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 166 ~~~~vGr~~~~~~l~~~L~~~---~~~~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
-.+++|++..++.+..++... ......+.|+|++|+|||+||+.+.+
T Consensus 28 ~~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~ 77 (338)
T 3pfi_A 28 FDGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISY 77 (338)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHH
T ss_pred HHHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHH
Confidence 456999999999998888752 23345678999999999999999987
No 36
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=97.50 E-value=0.00034 Score=66.01 Aligned_cols=45 Identities=9% Similarity=0.034 Sum_probs=34.6
Q ss_pred CcccchhhHHHHHHHHhcC-------------CCCcEEEEEEecCCCchHHHHHHhhc
Q 040913 168 DISEFERAREEWFDLLIEG-------------PIGLSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 168 ~~vGr~~~~~~l~~~L~~~-------------~~~~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
+++|.+..++.|.+.+... ......+.|+|++|+|||+||+.+.+
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~ 89 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAG 89 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHH
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 4889998888887765421 23355688999999999999987766
No 37
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.49 E-value=9.8e-05 Score=73.79 Aligned_cols=117 Identities=15% Similarity=0.162 Sum_probs=61.1
Q ss_pred Ccc-cchhh--HHHHHHHHhcCCCCcEEEEEEecCCCchHHHHHHhhcCccccccccc--hHHH-----HHHHHHHhCCC
Q 040913 168 DIS-EFERA--REEWFDLLIEGPIGLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDC--LAWI-----LDDIIRSLMPP 237 (425)
Q Consensus 168 ~~v-Gr~~~--~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLa~~v~~~~~~~~~F~~--~~wv-----~~~il~~l~~~ 237 (425)
+++ |.... ...+......+.. ...+.|+|++|+||||||+.+.+ .....|.. .+++ ..++...+...
T Consensus 106 ~fv~g~~n~~a~~~~~~~a~~~~~-~~~lll~Gp~G~GKTtLa~aia~--~l~~~~~~~~v~~v~~~~~~~~~~~~~~~~ 182 (440)
T 2z4s_A 106 NFVVGPGNSFAYHAALEVAKHPGR-YNPLFIYGGVGLGKTHLLQSIGN--YVVQNEPDLRVMYITSEKFLNDLVDSMKEG 182 (440)
T ss_dssp GCCCCTTTHHHHHHHHHHHHSTTS-SCCEEEECSSSSSHHHHHHHHHH--HHHHHCCSSCEEEEEHHHHHHHHHHHHHTT
T ss_pred hcCCCCchHHHHHHHHHHHhCCCC-CCeEEEECCCCCCHHHHHHHHHH--HHHHhCCCCeEEEeeHHHHHHHHHHHHHcc
Confidence 344 64433 3334444444332 66788999999999999999988 33222110 0111 22233322211
Q ss_pred CCCCccCCCCHHHHHHHHHHHhcCCeEEEEecccCC-Ch--hhHHHHHhhCCC-CCCCcEEEEecCC
Q 040913 238 SRVTVIIGEDYKLKKSILRDFLTNKKYFIALDDVCH-NI--EIWDDLEEVLPD-NQNGSRVLITVIN 300 (425)
Q Consensus 238 ~~~~~~~~~~~~~l~~~l~~~l~~kr~LlVLDdvw~-~~--~~~~~l~~~l~~-~~~gskIivTTR~ 300 (425)
.. ..+...+..+.-+|+|||+.. .. ..-+.+...+.. ...|..||+||.+
T Consensus 183 ---------~~----~~~~~~~~~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~ 236 (440)
T 2z4s_A 183 ---------KL----NEFREKYRKKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDR 236 (440)
T ss_dssp ---------CH----HHHHHHHTTTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESS
T ss_pred ---------cH----HHHHHHhcCCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 11 122333333677999999962 11 223334333321 1346788888876
No 38
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=97.49 E-value=0.00047 Score=66.75 Aligned_cols=48 Identities=25% Similarity=0.239 Sum_probs=37.6
Q ss_pred CCCcccchhhHHH---HHHHHhcCCCCcEEEEEEecCCCchHHHHHHhhcC
Q 040913 166 RLDISEFERAREE---WFDLLIEGPIGLSVVAILDSSGFDKTAFAADTYNN 213 (425)
Q Consensus 166 ~~~~vGr~~~~~~---l~~~L~~~~~~~~vi~IvG~gGvGKTtLa~~v~~~ 213 (425)
-.+++|++..++. +.+.+..+....+.+.|+|++|+|||+||+.+.+.
T Consensus 43 ~~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~ 93 (368)
T 3uk6_A 43 SQGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQA 93 (368)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHH
T ss_pred hhhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 4579999988776 45556655444467889999999999999999873
No 39
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=97.47 E-value=0.00018 Score=69.78 Aligned_cols=48 Identities=15% Similarity=0.063 Sum_probs=38.1
Q ss_pred CCCCcccchhhHHHHHHHHhc----C------CCCcEEEEEEecCCCchHHHHHHhhc
Q 040913 165 PRLDISEFERAREEWFDLLIE----G------PIGLSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 165 ~~~~~vGr~~~~~~l~~~L~~----~------~~~~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
.-.+++|.+..++.|.+.+.. . ....+.+.|+|++|+|||+||+.+.+
T Consensus 82 ~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~ 139 (357)
T 3d8b_A 82 NWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIAS 139 (357)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHH
T ss_pred CHHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHH
Confidence 345689999999999887753 1 12356788999999999999999987
No 40
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=97.47 E-value=0.00051 Score=67.33 Aligned_cols=49 Identities=16% Similarity=0.112 Sum_probs=38.5
Q ss_pred CCCCCcccchhhHHHHHHHHhcC----------CCCcEEEEEEecCCCchHHHHHHhhc
Q 040913 164 QPRLDISEFERAREEWFDLLIEG----------PIGLSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 164 ~~~~~~vGr~~~~~~l~~~L~~~----------~~~~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
..-.+++|.+..++.|.+++... ....+-+.|+|++|+|||+||+.+.+
T Consensus 112 ~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~ 170 (389)
T 3vfd_A 112 VKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAA 170 (389)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHH
T ss_pred CChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 34467999999999998887321 11245688999999999999999987
No 41
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=97.45 E-value=7.8e-05 Score=64.33 Aligned_cols=44 Identities=14% Similarity=0.062 Sum_probs=37.8
Q ss_pred CCcccchhhHHHHHHHHhcCCCCcEEEEEEecCCCchHHHHHHhhc
Q 040913 167 LDISEFERAREEWFDLLIEGPIGLSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 167 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
..++|++.+.+.+.+.+.... .+.+.|+|++|+||||||+.+.+
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~~--~~~vll~G~~G~GKT~la~~~~~ 65 (187)
T 2p65_A 22 DPVIGRDTEIRRAIQILSRRT--KNNPILLGDPGVGKTAIVEGLAI 65 (187)
T ss_dssp CCCCSCHHHHHHHHHHHTSSS--SCEEEEESCGGGCHHHHHHHHHH
T ss_pred chhhcchHHHHHHHHHHhCCC--CCceEEECCCCCCHHHHHHHHHH
Confidence 468999999999999997643 44568999999999999999887
No 42
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.40 E-value=9.2e-05 Score=65.41 Aligned_cols=39 Identities=23% Similarity=0.083 Sum_probs=28.6
Q ss_pred hHHHHHHHHhcCCCC--cEEEEEEecCCCchHHHHHHhhcC
Q 040913 175 AREEWFDLLIEGPIG--LSVVAILDSSGFDKTAFAADTYNN 213 (425)
Q Consensus 175 ~~~~l~~~L~~~~~~--~~vi~IvG~gGvGKTtLa~~v~~~ 213 (425)
..+.+.+++...... ...+.|+|++|+||||||+.+++.
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~ 77 (202)
T 2w58_A 37 AIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANE 77 (202)
T ss_dssp HHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 445556666554322 267889999999999999999983
No 43
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.40 E-value=0.00022 Score=67.97 Aligned_cols=37 Identities=22% Similarity=0.010 Sum_probs=27.4
Q ss_pred HHHHHHHHhcCCCCcEEEEEEecCCCchHHHHHHhhc
Q 040913 176 REEWFDLLIEGPIGLSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 176 ~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
...+..++..+......+.|+|++|+||||||+.+.+
T Consensus 23 ~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~ 59 (324)
T 1l8q_A 23 YEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGN 59 (324)
T ss_dssp HHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHH
T ss_pred HHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHH
Confidence 3445555554433456688999999999999999988
No 44
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=97.38 E-value=0.00062 Score=65.92 Aligned_cols=96 Identities=22% Similarity=0.222 Sum_probs=56.9
Q ss_pred CCCCCcccchhhHHHHHHHHhcC----------CCCcEEEEEEecCCCchHHHHHHhhcCccccccccchHHHHHHHHHH
Q 040913 164 QPRLDISEFERAREEWFDLLIEG----------PIGLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWILDDIIRS 233 (425)
Q Consensus 164 ~~~~~~vGr~~~~~~l~~~L~~~----------~~~~~vi~IvG~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~~il~~ 233 (425)
..-.+++|.+..++.|.+.+... ....+-|.++|++|+|||+||+.+.+ .....|-..- ..++...
T Consensus 48 ~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~--~~~~~~~~v~--~~~l~~~ 123 (355)
T 2qp9_X 48 VKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVAT--EANSTFFSVS--SSDLVSK 123 (355)
T ss_dssp CCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHH--HHTCEEEEEE--HHHHHSC
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHH--HhCCCEEEee--HHHHhhh
Confidence 34457899999999998876321 12234578899999999999999998 4433331110 1111111
Q ss_pred hCCCCCCCccCCCCHHHHHHHHHHHhcCCeEEEEecccC
Q 040913 234 LMPPSRVTVIIGEDYKLKKSILRDFLTNKKYFIALDDVC 272 (425)
Q Consensus 234 l~~~~~~~~~~~~~~~~l~~~l~~~l~~kr~LlVLDdvw 272 (425)
. .......+...+...-..+..+|+||++.
T Consensus 124 ~---------~g~~~~~~~~~f~~a~~~~~~vl~iDEid 153 (355)
T 2qp9_X 124 W---------MGESEKLVKQLFAMARENKPSIIFIDQVD 153 (355)
T ss_dssp C------------CHHHHHHHHHHHHHTSSEEEEEECGG
T ss_pred h---------cchHHHHHHHHHHHHHHcCCeEEEEechH
Confidence 0 01122223333333334678999999996
No 45
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=97.34 E-value=0.00065 Score=67.85 Aligned_cols=50 Identities=16% Similarity=0.163 Sum_probs=38.8
Q ss_pred CCCCCCcccchhhHHHHHHHHhc----C------CCCcEEEEEEecCCCchHHHHHHhhc
Q 040913 163 GQPRLDISEFERAREEWFDLLIE----G------PIGLSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 163 ~~~~~~~vGr~~~~~~l~~~L~~----~------~~~~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
...-.+++|.+..++.|.+.+.. + ....+-|.++|++|+|||+||+.+.+
T Consensus 130 ~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~ 189 (444)
T 2zan_A 130 NVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVAT 189 (444)
T ss_dssp CCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 34446789999999999887631 1 12346788999999999999999998
No 46
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=97.33 E-value=0.00013 Score=67.52 Aligned_cols=47 Identities=13% Similarity=-0.074 Sum_probs=33.9
Q ss_pred CCcccchhhHHHHHHHHhcCCCCcEEEEEEecCCCchHHHHHHhhcC
Q 040913 167 LDISEFERAREEWFDLLIEGPIGLSVVAILDSSGFDKTAFAADTYNN 213 (425)
Q Consensus 167 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLa~~v~~~ 213 (425)
..++|.+..+.++.+.+..-......|.|+|.+|+|||+||+.+++.
T Consensus 6 ~~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~ 52 (265)
T 2bjv_A 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYL 52 (265)
T ss_dssp ----CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHT
T ss_pred ccceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHh
Confidence 45789999999888777642222345679999999999999999874
No 47
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.27 E-value=0.00044 Score=64.89 Aligned_cols=48 Identities=17% Similarity=0.159 Sum_probs=38.1
Q ss_pred CCCCcccchhhHHHHHHHHhcC----------CCCcEEEEEEecCCCchHHHHHHhhc
Q 040913 165 PRLDISEFERAREEWFDLLIEG----------PIGLSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 165 ~~~~~vGr~~~~~~l~~~L~~~----------~~~~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
.-.+++|.+..++.+.+.+..+ ....+.+.|+|++|+||||||+.+.+
T Consensus 19 ~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~ 76 (297)
T 3b9p_A 19 EWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVAT 76 (297)
T ss_dssp CGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHH
T ss_pred CHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHH
Confidence 3456999999999998877431 11245788999999999999999988
No 48
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=97.27 E-value=0.0002 Score=66.16 Aligned_cols=49 Identities=22% Similarity=0.162 Sum_probs=35.9
Q ss_pred CCCCCcccchhhHHHHHHHHhc----------CCCCcEEEEEEecCCCchHHHHHHhhc
Q 040913 164 QPRLDISEFERAREEWFDLLIE----------GPIGLSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 164 ~~~~~~vGr~~~~~~l~~~L~~----------~~~~~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
..-.+++|.+..++.+.+.+.. +....+-+.++|++|+|||+||+.+.+
T Consensus 8 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~ 66 (268)
T 2r62_A 8 VRFKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAG 66 (268)
T ss_dssp CCSTTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHH
T ss_pred CCHHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHH
Confidence 3446799999888888776541 111123367999999999999999988
No 49
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.19 E-value=0.0011 Score=63.53 Aligned_cols=118 Identities=13% Similarity=0.117 Sum_probs=67.6
Q ss_pred CCcccchhhHHHHHHHHhcCCCCcEEEEEEecCCCchHHHHHHhhcCccccc-cccchHHHHHHHHHHhCCCCCCCccCC
Q 040913 167 LDISEFERAREEWFDLLIEGPIGLSVVAILDSSGFDKTAFAADTYNNNHVKF-YFDCLAWILDDIIRSLMPPSRVTVIIG 245 (425)
Q Consensus 167 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLa~~v~~~~~~~~-~F~~~~wv~~~il~~l~~~~~~~~~~~ 245 (425)
.+++|.+..++.|...+..+. .+.+.++|++|+||||+|+.+.+. +.. .+.. . ...+.. ...
T Consensus 25 ~~~~g~~~~~~~L~~~i~~g~--~~~~ll~Gp~G~GKTtla~~la~~--l~~~~~~~--~-----~~~~~~------~~~ 87 (340)
T 1sxj_C 25 DEVYGQNEVITTVRKFVDEGK--LPHLLFYGPPGTGKTSTIVALARE--IYGKNYSN--M-----VLELNA------SDD 87 (340)
T ss_dssp GGCCSCHHHHHHHHHHHHTTC--CCCEEEECSSSSSHHHHHHHHHHH--HHTTSHHH--H-----EEEECT------TSC
T ss_pred HHhcCcHHHHHHHHHHHhcCC--CceEEEECCCCCCHHHHHHHHHHH--HcCCCccc--e-----EEEEcC------ccc
Confidence 457888888888888888764 223789999999999999998872 211 0000 0 000000 011
Q ss_pred CCHHHHHHHHHHHh------cCCeEEEEecccCC-ChhhHHHHHhhCCCCCCCcEEEEecCCh
Q 040913 246 EDYKLKKSILRDFL------TNKKYFIALDDVCH-NIEIWDDLEEVLPDNQNGSRVLITVINP 301 (425)
Q Consensus 246 ~~~~~l~~~l~~~l------~~kr~LlVLDdvw~-~~~~~~~l~~~l~~~~~gskIivTTR~~ 301 (425)
.....+.+.+.... .+.+-++|+|++.. +....+.+...+......+++|++|...
T Consensus 88 ~~~~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~ 150 (340)
T 1sxj_C 88 RGIDVVRNQIKDFASTRQIFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYA 150 (340)
T ss_dssp CSHHHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCG
T ss_pred ccHHHHHHHHHHHHhhcccCCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCc
Confidence 12333333333332 23467899999852 3345555555544334456777776543
No 50
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=97.19 E-value=0.0011 Score=66.92 Aligned_cols=93 Identities=16% Similarity=0.145 Sum_probs=58.3
Q ss_pred CCCcccchhhHHHHHHHHhcC-----------CCCcEEEEEEecCCCchHHHHHHhhcCccccccccchHHHHHHHHHHh
Q 040913 166 RLDISEFERAREEWFDLLIEG-----------PIGLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWILDDIIRSL 234 (425)
Q Consensus 166 ~~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~IvG~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~~il~~l 234 (425)
-.+++|.+..+++|.+++... .....-+.|+|++|+|||+||+.+.+ +....|-..- ..++...+
T Consensus 203 ~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~--~~~~~fv~vn--~~~l~~~~ 278 (489)
T 3hu3_A 203 YDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN--ETGAFFFLIN--GPEIMSKL 278 (489)
T ss_dssp GGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHH--HCSSEEEEEE--HHHHHTSC
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHH--HhCCCEEEEE--chHhhhhh
Confidence 346899999999998877532 22345688999999999999999988 4444441100 11111110
Q ss_pred CCCCCCCccCCCCHHHHHHHHHHHhcCCeEEEEeccc
Q 040913 235 MPPSRVTVIIGEDYKLKKSILRDFLTNKKYFIALDDV 271 (425)
Q Consensus 235 ~~~~~~~~~~~~~~~~l~~~l~~~l~~kr~LlVLDdv 271 (425)
.......+...+.....++..+|+||++
T Consensus 279 ---------~g~~~~~~~~~f~~A~~~~p~iLfLDEI 306 (489)
T 3hu3_A 279 ---------AGESESNLRKAFEEAEKNAPAIIFIDEL 306 (489)
T ss_dssp ---------TTHHHHHHHHHHHHHHHTCSEEEEEESH
T ss_pred ---------cchhHHHHHHHHHHHHhcCCcEEEecch
Confidence 1112233444444555567889999999
No 51
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.13 E-value=0.0013 Score=60.28 Aligned_cols=96 Identities=18% Similarity=0.182 Sum_probs=54.1
Q ss_pred CCCCCcccchhhHHHHHHHH---hcCC-------CCcEEEEEEecCCCchHHHHHHhhcCccccccccchHHHHHHHHHH
Q 040913 164 QPRLDISEFERAREEWFDLL---IEGP-------IGLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWILDDIIRS 233 (425)
Q Consensus 164 ~~~~~~vGr~~~~~~l~~~L---~~~~-------~~~~vi~IvG~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~~il~~ 233 (425)
..-.+++|.+..++.+.+.+ .... ...+-+.|+|++|+||||||+.+.+. ....|-.
T Consensus 9 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~--~~~~~~~----------- 75 (257)
T 1lv7_A 9 TTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGE--AKVPFFT----------- 75 (257)
T ss_dssp CCGGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHH--HTCCEEE-----------
T ss_pred CCHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHH--cCCCEEE-----------
Confidence 34457899988887776543 2211 12334789999999999999999873 2222210
Q ss_pred hCCCCCCCccCCCCHHHHHHHHHHHhcCCeEEEEecccC
Q 040913 234 LMPPSRVTVIIGEDYKLKKSILRDFLTNKKYFIALDDVC 272 (425)
Q Consensus 234 l~~~~~~~~~~~~~~~~l~~~l~~~l~~kr~LlVLDdvw 272 (425)
+....-...........+...+.........++++|++.
T Consensus 76 i~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~il~iDeid 114 (257)
T 1lv7_A 76 ISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEID 114 (257)
T ss_dssp ECSCSSTTSCCCCCHHHHHHHHHHHHTTCSEEEEETTHH
T ss_pred EeHHHHHHHhhhhhHHHHHHHHHHHHHcCCeeehhhhhh
Confidence 000000000111223344444444445567899999983
No 52
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.05 E-value=0.00057 Score=64.44 Aligned_cols=45 Identities=16% Similarity=0.133 Sum_probs=36.4
Q ss_pred CcccchhhHHHHHHHHhcC-------CCCcEEEEEEecCCCchHHHHHHhhc
Q 040913 168 DISEFERAREEWFDLLIEG-------PIGLSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 168 ~~vGr~~~~~~l~~~L~~~-------~~~~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
.++|.+..++.+...+... ......+.++|++|+||||+|+.+.+
T Consensus 18 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~ 69 (311)
T 4fcw_A 18 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAA 69 (311)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHH
Confidence 4789999988888777653 12246899999999999999999887
No 53
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.02 E-value=0.0014 Score=65.78 Aligned_cols=96 Identities=13% Similarity=0.127 Sum_probs=54.7
Q ss_pred CCCCCcccchhhHHHHHHHHh---cC-------CCCcEEEEEEecCCCchHHHHHHhhcCccccccccchHHHHHHHHHH
Q 040913 164 QPRLDISEFERAREEWFDLLI---EG-------PIGLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWILDDIIRS 233 (425)
Q Consensus 164 ~~~~~~vGr~~~~~~l~~~L~---~~-------~~~~~vi~IvG~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~~il~~ 233 (425)
..-.+++|.+..++++.+.+. .. -...+-|.++|++|+||||||+.+.+ +....|-..- . ..
T Consensus 13 ~~f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~--~~~~~f~~is--~----~~ 84 (476)
T 2ce7_A 13 VTFKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAG--EANVPFFHIS--G----SD 84 (476)
T ss_dssp CCGGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHH--HHTCCEEEEE--G----GG
T ss_pred CCHHHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHH--HcCCCeeeCC--H----HH
Confidence 344578999988777766543 21 01123477999999999999999988 3333331100 0 00
Q ss_pred hCCCCCCCccCCCCHHHHHHHHHHHhcCCeEEEEecccC
Q 040913 234 LMPPSRVTVIIGEDYKLKKSILRDFLTNKKYFIALDDVC 272 (425)
Q Consensus 234 l~~~~~~~~~~~~~~~~l~~~l~~~l~~kr~LlVLDdvw 272 (425)
+... ........+...+.....+...+|+||++.
T Consensus 85 ~~~~-----~~g~~~~~~r~lf~~A~~~~p~ILfIDEid 118 (476)
T 2ce7_A 85 FVEL-----FVGVGAARVRDLFAQAKAHAPCIVFIDEID 118 (476)
T ss_dssp TTTC-----CTTHHHHHHHHHHHHHHHTCSEEEEEETGG
T ss_pred HHHH-----HhcccHHHHHHHHHHHHhcCCCEEEEechh
Confidence 0000 001112233344444445678999999995
No 54
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=96.99 E-value=0.0012 Score=70.49 Aligned_cols=45 Identities=13% Similarity=0.109 Sum_probs=37.9
Q ss_pred CCCcccchhhHHHHHHHHhcCCCCcEEEEEEecCCCchHHHHHHhhc
Q 040913 166 RLDISEFERAREEWFDLLIEGPIGLSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 166 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
-..++|++.++++++..|.... ..-+.++|++|+|||++|+.+.+
T Consensus 179 ld~iiG~~~~i~~l~~~l~~~~--~~~vLL~G~pGtGKT~la~~la~ 223 (758)
T 3pxi_A 179 LDPVIGRSKEIQRVIEVLSRRT--KNNPVLIGEPGVGKTAIAEGLAQ 223 (758)
T ss_dssp SCCCCCCHHHHHHHHHHHHCSS--SCEEEEESCTTTTTHHHHHHHHH
T ss_pred CCCccCchHHHHHHHHHHhCCC--CCCeEEECCCCCCHHHHHHHHHH
Confidence 3469999999999999998754 23367999999999999999887
No 55
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.99 E-value=0.0011 Score=62.32 Aligned_cols=24 Identities=13% Similarity=0.105 Sum_probs=21.4
Q ss_pred CcEEEEEEecCCCchHHHHHHhhc
Q 040913 189 GLSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 189 ~~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
.+..+.++|++|+|||+||+.+.+
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~ 58 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFR 58 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 356788899999999999999998
No 56
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=96.91 E-value=0.0037 Score=66.74 Aligned_cols=44 Identities=20% Similarity=0.108 Sum_probs=37.6
Q ss_pred CCcccchhhHHHHHHHHhcCCCCcEEEEEEecCCCchHHHHHHhhc
Q 040913 167 LDISEFERAREEWFDLLIEGPIGLSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 167 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
..++||+.++.++++.|.... ..-+.++|.+|+||||+|+.+.+
T Consensus 186 d~~iGr~~~i~~l~~~l~~~~--~~~vlL~G~~GtGKT~la~~la~ 229 (758)
T 1r6b_X 186 DPLIGREKELERAIQVLCRRR--KNNPLLVGESGVGKTAIAEGLAW 229 (758)
T ss_dssp CCCCSCHHHHHHHHHHHTSSS--SCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCccCCHHHHHHHHHHHhccC--CCCeEEEcCCCCCHHHHHHHHHH
Confidence 468999999999999998654 33457899999999999999887
No 57
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=96.76 E-value=0.0023 Score=54.93 Aligned_cols=22 Identities=41% Similarity=0.684 Sum_probs=19.4
Q ss_pred cEEEEEEecCCCchHHHHHHhh
Q 040913 190 LSVVAILDSSGFDKTAFAADTY 211 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~ 211 (425)
-.+++|+|+.|+|||||++..+
T Consensus 9 gei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHHHS
T ss_pred CEEEEEECCCCCCHHHHHHHHc
Confidence 4689999999999999999644
No 58
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=96.74 E-value=0.0079 Score=56.78 Aligned_cols=115 Identities=7% Similarity=-0.065 Sum_probs=66.4
Q ss_pred cchhhHHHHHHHHhcCCCCcEEEEEEecCCCchHHHHHHhhcCc-ccc-ccccchHHHHHHHHHHhCCCCCCCccCCCCH
Q 040913 171 EFERAREEWFDLLIEGPIGLSVVAILDSSGFDKTAFAADTYNNN-HVK-FYFDCLAWILDDIIRSLMPPSRVTVIIGEDY 248 (425)
Q Consensus 171 Gr~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLa~~v~~~~-~~~-~~F~~~~wv~~~il~~l~~~~~~~~~~~~~~ 248 (425)
|-++..+.|.+.+..+. .+..-++|+.|+||||+|..+.+.. ... .|.+.. . +.. .......
T Consensus 1 g~~~~~~~L~~~i~~~~--~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~-~--------l~~-----~~~~~~i 64 (305)
T 2gno_A 1 GAKDQLETLKRIIEKSE--GISILINGEDLSYPREVSLELPEYVEKFPPKASDVL-E--------IDP-----EGENIGI 64 (305)
T ss_dssp ---CHHHHHHHHHHTCS--SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEE-E--------ECC-----SSSCBCH
T ss_pred ChHHHHHHHHHHHHCCC--CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEE-E--------EcC-----CcCCCCH
Confidence 34555677777777665 6788899999999999999987621 010 111110 0 000 0012334
Q ss_pred HHHHHHHHHHh----cCCeEEEEecccCC-ChhhHHHHHhhCCCCCCCcEEEEecCCh
Q 040913 249 KLKKSILRDFL----TNKKYFIALDDVCH-NIEIWDDLEEVLPDNQNGSRVLITVINP 301 (425)
Q Consensus 249 ~~l~~~l~~~l----~~kr~LlVLDdvw~-~~~~~~~l~~~l~~~~~gskIivTTR~~ 301 (425)
+++.+.+...- .+++-++|+|++.. +....+.+...+....+.+.+|++|.+.
T Consensus 65 d~ir~li~~~~~~p~~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~ 122 (305)
T 2gno_A 65 DDIRTIKDFLNYSPELYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRW 122 (305)
T ss_dssp HHHHHHHHHHTSCCSSSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCG
T ss_pred HHHHHHHHHHhhccccCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECCh
Confidence 44433322221 24677999999963 4466677777766555677877776553
No 59
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=96.71 E-value=0.0012 Score=66.43 Aligned_cols=44 Identities=14% Similarity=0.128 Sum_probs=37.3
Q ss_pred CCcccchhhHHHHHHHHhcCCCCcEEEEEEecCCCchHHHHHHhhc
Q 040913 167 LDISEFERAREEWFDLLIEGPIGLSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 167 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
+.++|++.+++.+++.|.... ..-+.++|++|+|||++|+.+.+
T Consensus 180 d~iiGr~~~i~~l~~~l~r~~--~~~~LL~G~pG~GKT~la~~la~ 223 (468)
T 3pxg_A 180 DPVIGRSKEIQRVIEVLSRRT--KNNPVLIGEPGVGKTAIAEGLAQ 223 (468)
T ss_dssp CCCCCCHHHHHHHHHHHHCSS--SCEEEEESCTTTTTHHHHHHHHH
T ss_pred CCccCcHHHHHHHHHHHhccC--CCCeEEECCCCCCHHHHHHHHHH
Confidence 469999999999999998744 23356899999999999999887
No 60
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=96.66 E-value=0.0097 Score=56.85 Aligned_cols=125 Identities=10% Similarity=0.041 Sum_probs=66.5
Q ss_pred hhhHHHHHHHHhcCCCCcEEEEEEecCCCchHHHHHHhhcCccccc------cccchHHHHHHHHHHhCCCCCCCc----
Q 040913 173 ERAREEWFDLLIEGPIGLSVVAILDSSGFDKTAFAADTYNNNHVKF------YFDCLAWILDDIIRSLMPPSRVTV---- 242 (425)
Q Consensus 173 ~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLa~~v~~~~~~~~------~F~~~~wv~~~il~~l~~~~~~~~---- 242 (425)
++..+.+.+.+..+. -.+.+-++|+.|+||||+|+.+.+.-.... +-.|.. -+.+...-......-.
T Consensus 8 ~~~~~~l~~~i~~~~-~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~--c~~~~~~~~~d~~~~~~~~~ 84 (334)
T 1a5t_A 8 RPDFEKLVASYQAGR-GHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRG--CQLMQAGTHPDYYTLAPEKG 84 (334)
T ss_dssp HHHHHHHHHHHHTTC-CCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHH--HHHHHHTCCTTEEEECCCTT
T ss_pred HHHHHHHHHHHHcCC-cceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHH--HHHHhcCCCCCEEEEecccc
Confidence 455666677666543 345688999999999999988765211100 001111 0011110000000000
Q ss_pred cCCCCHHHHHHHHHHHh-----cCCeEEEEecccCC-ChhhHHHHHhhCCCCCCCcEEEEecCCh
Q 040913 243 IIGEDYKLKKSILRDFL-----TNKKYFIALDDVCH-NIEIWDDLEEVLPDNQNGSRVLITVINP 301 (425)
Q Consensus 243 ~~~~~~~~l~~~l~~~l-----~~kr~LlVLDdvw~-~~~~~~~l~~~l~~~~~gskIivTTR~~ 301 (425)
......+++.+ +.+.+ .+++-++|+|++.. +.+..+.+...+.....++.+|++|.+.
T Consensus 85 ~~~~~i~~ir~-l~~~~~~~~~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t~~~ 148 (334)
T 1a5t_A 85 KNTLGVDAVRE-VTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREP 148 (334)
T ss_dssp CSSBCHHHHHH-HHHHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCG
T ss_pred CCCCCHHHHHH-HHHHHhhccccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEeCCh
Confidence 11233444433 33333 35678999999963 3456667777776555567777777664
No 61
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.58 E-value=0.0037 Score=61.93 Aligned_cols=98 Identities=14% Similarity=0.087 Sum_probs=58.4
Q ss_pred CCCCCCCcccchhhHHHHHHHHhc----C-------CCCcEEEEEEecCCCchHHHHHHhhcCccccccccchHHHHHHH
Q 040913 162 EGQPRLDISEFERAREEWFDLLIE----G-------PIGLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWILDDI 230 (425)
Q Consensus 162 ~~~~~~~~vGr~~~~~~l~~~L~~----~-------~~~~~vi~IvG~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~~i 230 (425)
|.+.-.++.|.++.++.|.+.+.- + -..++=|.++|++|+|||+||+++.+ +...+|-..--
T Consensus 176 p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~--e~~~~~~~v~~----- 248 (437)
T 4b4t_L 176 GEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAA--TIGANFIFSPA----- 248 (437)
T ss_dssp CSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHH--HHTCEEEEEEG-----
T ss_pred CCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHH--HhCCCEEEEeh-----
Confidence 444556788999988888776542 1 13456678999999999999999998 44444421000
Q ss_pred HHHhCCCCCCCccCCCCHHHHHHHHHHHhcCCeEEEEecccC
Q 040913 231 IRSLMPPSRVTVIIGEDYKLKKSILRDFLTNKKYFIALDDVC 272 (425)
Q Consensus 231 l~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~kr~LlVLDdvw 272 (425)
..+... ....+...+...+...-....++|++|++.
T Consensus 249 -s~l~sk-----~~Gese~~ir~~F~~A~~~~P~IifiDEiD 284 (437)
T 4b4t_L 249 -SGIVDK-----YIGESARIIREMFAYAKEHEPCIIFMDEVD 284 (437)
T ss_dssp -GGTCCS-----SSSHHHHHHHHHHHHHHHSCSEEEEEECCC
T ss_pred -hhhccc-----cchHHHHHHHHHHHHHHhcCCceeeeeccc
Confidence 001110 111122222333333334678999999996
No 62
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.56 E-value=0.0033 Score=62.12 Aligned_cols=98 Identities=16% Similarity=0.140 Sum_probs=58.8
Q ss_pred CCCCCCCcccchhhHHHHHHHHhc----C-------CCCcEEEEEEecCCCchHHHHHHhhcCccccccccchHHHHHHH
Q 040913 162 EGQPRLDISEFERAREEWFDLLIE----G-------PIGLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWILDDI 230 (425)
Q Consensus 162 ~~~~~~~~vGr~~~~~~l~~~L~~----~-------~~~~~vi~IvG~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~~i 230 (425)
|.+.-.++.|.++.++.|.+.+.- + -...+=|.++|++|+|||+||+++.+ ....+|-..-.
T Consensus 167 p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~--~~~~~~~~v~~----- 239 (428)
T 4b4t_K 167 PDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVAN--STKAAFIRVNG----- 239 (428)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHH--HHTCEEEEEEG-----
T ss_pred CCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHH--HhCCCeEEEec-----
Confidence 445556788999999988776542 1 13355678999999999999999998 44444421000
Q ss_pred HHHhCCCCCCCccCCCCHHHHHHHHHHHhcCCeEEEEecccC
Q 040913 231 IRSLMPPSRVTVIIGEDYKLKKSILRDFLTNKKYFIALDDVC 272 (425)
Q Consensus 231 l~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~kr~LlVLDdvw 272 (425)
..+.. .....+...+...+...-....++|++|++.
T Consensus 240 -~~l~~-----~~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD 275 (428)
T 4b4t_K 240 -SEFVH-----KYLGEGPRMVRDVFRLARENAPSIIFIDEVD 275 (428)
T ss_dssp -GGTCC-----SSCSHHHHHHHHHHHHHHHTCSEEEEEECTH
T ss_pred -chhhc-----cccchhHHHHHHHHHHHHHcCCCeeechhhh
Confidence 00000 0111122233333333334678999999985
No 63
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=96.49 E-value=0.0075 Score=60.89 Aligned_cols=52 Identities=19% Similarity=0.154 Sum_probs=36.5
Q ss_pred CCCCCCCcccchhhHHHHHHHHh---cCC-------CCcEEEEEEecCCCchHHHHHHhhcC
Q 040913 162 EGQPRLDISEFERAREEWFDLLI---EGP-------IGLSVVAILDSSGFDKTAFAADTYNN 213 (425)
Q Consensus 162 ~~~~~~~~vGr~~~~~~l~~~L~---~~~-------~~~~vi~IvG~gGvGKTtLa~~v~~~ 213 (425)
+...-.+++|.+..+.++.+... ... .-.+-+.|+|++|+||||||+.+.+.
T Consensus 26 ~~~~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~ 87 (499)
T 2dhr_A 26 PKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGE 87 (499)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred CCCCHHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 34445679999888777765543 211 11223889999999999999999883
No 64
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.49 E-value=0.0029 Score=61.88 Aligned_cols=98 Identities=14% Similarity=0.121 Sum_probs=58.1
Q ss_pred CCCCCCCcccchhhHHHHHHHHhc----C-------CCCcEEEEEEecCCCchHHHHHHhhcCccccccccchHHHHHHH
Q 040913 162 EGQPRLDISEFERAREEWFDLLIE----G-------PIGLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWILDDI 230 (425)
Q Consensus 162 ~~~~~~~~vGr~~~~~~l~~~L~~----~-------~~~~~vi~IvG~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~~i 230 (425)
|.+.-.++.|.++.+++|.+.+.- + -..++=|.++|++|.|||.||+++.+ +...+|-..--
T Consensus 143 p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~--e~~~~f~~v~~----- 215 (405)
T 4b4t_J 143 PDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAH--HTDCKFIRVSG----- 215 (405)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHH--HHTCEEEEEEG-----
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHH--hhCCCceEEEh-----
Confidence 444556788999998888766542 1 12345677999999999999999998 55444421000
Q ss_pred HHHhCCCCCCCccCCCCHHHHHHHHHHHhcCCeEEEEecccC
Q 040913 231 IRSLMPPSRVTVIIGEDYKLKKSILRDFLTNKKYFIALDDVC 272 (425)
Q Consensus 231 l~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~kr~LlVLDdvw 272 (425)
..+.. .....+...+...+...-+...++|++|++.
T Consensus 216 -s~l~s-----k~vGese~~vr~lF~~Ar~~aP~IIFiDEiD 251 (405)
T 4b4t_J 216 -AELVQ-----KYIGEGSRMVRELFVMAREHAPSIIFMDEID 251 (405)
T ss_dssp -GGGSC-----SSTTHHHHHHHHHHHHHHHTCSEEEEEESSS
T ss_pred -HHhhc-----cccchHHHHHHHHHHHHHHhCCceEeeecch
Confidence 00000 0111122223333333334678999999996
No 65
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.46 E-value=0.0023 Score=56.72 Aligned_cols=38 Identities=16% Similarity=0.136 Sum_probs=28.7
Q ss_pred hHHHHHHHHhcCCCCcEEEEEEecCCCchHHHHHHhhc
Q 040913 175 AREEWFDLLIEGPIGLSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 175 ~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
-.++|.+.+........+|+|+|+.|+|||||++.+..
T Consensus 7 ~~~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~ 44 (208)
T 3c8u_A 7 LCQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAA 44 (208)
T ss_dssp HHHHHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34455555554334578999999999999999998876
No 66
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.43 E-value=0.0041 Score=61.74 Aligned_cols=97 Identities=15% Similarity=0.124 Sum_probs=58.1
Q ss_pred CCCCCCcccchhhHHHHHHHHhc----C-------CCCcEEEEEEecCCCchHHHHHHhhcCccccccccchHHHHHHHH
Q 040913 163 GQPRLDISEFERAREEWFDLLIE----G-------PIGLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWILDDII 231 (425)
Q Consensus 163 ~~~~~~~vGr~~~~~~l~~~L~~----~-------~~~~~vi~IvG~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~~il 231 (425)
.+.-.++.|.++.+++|.+.+.- + -...+=|.++|++|+|||+||+++.+ +...+|-..--
T Consensus 205 ~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~--e~~~~fi~vs~------ 276 (467)
T 4b4t_H 205 DVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVAN--RTDATFIRVIG------ 276 (467)
T ss_dssp SCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHH--HHTCEEEEEEG------
T ss_pred CCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHh--ccCCCeEEEEh------
Confidence 34446788999999888775432 1 13456678999999999999999998 55444421000
Q ss_pred HHhCCCCCCCccCCCCHHHHHHHHHHHhcCCeEEEEecccC
Q 040913 232 RSLMPPSRVTVIIGEDYKLKKSILRDFLTNKKYFIALDDVC 272 (425)
Q Consensus 232 ~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~kr~LlVLDdvw 272 (425)
..+... ....+...+...+...-....++|++|++.
T Consensus 277 s~L~sk-----~vGesek~ir~lF~~Ar~~aP~IIfiDEiD 312 (467)
T 4b4t_H 277 SELVQK-----YVGEGARMVRELFEMARTKKACIIFFDEID 312 (467)
T ss_dssp GGGCCC-----SSSHHHHHHHHHHHHHHHTCSEEEEEECCT
T ss_pred HHhhcc-----cCCHHHHHHHHHHHHHHhcCCceEeecccc
Confidence 001111 111122233333333334678999999996
No 67
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.37 E-value=0.0036 Score=61.97 Aligned_cols=58 Identities=14% Similarity=0.175 Sum_probs=42.5
Q ss_pred CCCCCCCCcccchhhHHHHHHHHh----cC-------CCCcEEEEEEecCCCchHHHHHHhhcCccccccc
Q 040913 161 SEGQPRLDISEFERAREEWFDLLI----EG-------PIGLSVVAILDSSGFDKTAFAADTYNNNHVKFYF 220 (425)
Q Consensus 161 ~~~~~~~~~vGr~~~~~~l~~~L~----~~-------~~~~~vi~IvG~gGvGKTtLa~~v~~~~~~~~~F 220 (425)
.|.+.-.++.|.++.+++|.+.+. .+ -..++=|.++|++|+|||+||+++.+ +...+|
T Consensus 175 ~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~--e~~~~f 243 (434)
T 4b4t_M 175 KPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAA--QTNATF 243 (434)
T ss_dssp SCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHH--HHTCEE
T ss_pred CCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHH--HhCCCE
Confidence 344555678899999998877643 22 13456678999999999999999998 444444
No 68
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.27 E-value=0.011 Score=62.87 Aligned_cols=98 Identities=14% Similarity=0.130 Sum_probs=60.7
Q ss_pred CCCCCCCcccchhhHHHHHHHHh----cCC-------CCcEEEEEEecCCCchHHHHHHhhcCccccccccchHHHHHHH
Q 040913 162 EGQPRLDISEFERAREEWFDLLI----EGP-------IGLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWILDDI 230 (425)
Q Consensus 162 ~~~~~~~~vGr~~~~~~l~~~L~----~~~-------~~~~vi~IvG~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~~i 230 (425)
+.+.-.++.|.++.+++|.+.+. .++ ..++-|.++|++|+|||+||+.+.+ +...+|-.+- ..++
T Consensus 199 ~~v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~--elg~~~~~v~--~~~l 274 (806)
T 3cf2_A 199 NEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN--ETGAFFFLIN--GPEI 274 (806)
T ss_dssp SSCCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHT--TTTCEEEEEE--HHHH
T ss_pred CCCChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHH--HhCCeEEEEE--hHHh
Confidence 34445568899988888877653 221 2456788999999999999999999 5554442100 0111
Q ss_pred HHHhCCCCCCCccCCCCHHHHHHHHHHHhcCCeEEEEecccC
Q 040913 231 IRSLMPPSRVTVIIGEDYKLKKSILRDFLTNKKYFIALDDVC 272 (425)
Q Consensus 231 l~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~kr~LlVLDdvw 272 (425)
. .. ........+...+....+...++|++|++.
T Consensus 275 ~----sk-----~~gese~~lr~lF~~A~~~~PsIIfIDEiD 307 (806)
T 3cf2_A 275 M----SK-----LAGESESNLRKAFEEAEKNAPAIIFIDELD 307 (806)
T ss_dssp H----SS-----CTTHHHHHHHHHHHHHTTSCSEEEEEESGG
T ss_pred h----cc-----cchHHHHHHHHHHHHHHHcCCeEEEEehhc
Confidence 1 11 111223344444444556678999999996
No 69
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.26 E-value=0.0016 Score=69.92 Aligned_cols=96 Identities=15% Similarity=0.116 Sum_probs=57.7
Q ss_pred CCCCCcccchhhHHHHHHHHhc-----------CCCCcEEEEEEecCCCchHHHHHHhhcCccccccccchHHHHHHHHH
Q 040913 164 QPRLDISEFERAREEWFDLLIE-----------GPIGLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWILDDIIR 232 (425)
Q Consensus 164 ~~~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vi~IvG~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~~il~ 232 (425)
+.-.+++|.+..+++|.+++.. .-.....|.++|++|+||||||+.+.+ .....|-..- -.
T Consensus 201 v~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~--~l~~~~i~v~--~~---- 272 (806)
T 1ypw_A 201 VGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN--ETGAFFFLIN--GP---- 272 (806)
T ss_dssp CCGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHH--TTTCEEEEEE--HH----
T ss_pred CCHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHH--HcCCcEEEEE--ch----
Confidence 3345689999999999887753 112345688999999999999999988 4433331000 01
Q ss_pred HhCCCCCCCccCCCCHHHHHHHHHHHhcCCeEEEEecccC
Q 040913 233 SLMPPSRVTVIIGEDYKLKKSILRDFLTNKKYFIALDDVC 272 (425)
Q Consensus 233 ~l~~~~~~~~~~~~~~~~l~~~l~~~l~~kr~LlVLDdvw 272 (425)
.+.... .......+...+.........++++|++.
T Consensus 273 ~l~~~~-----~g~~~~~l~~vf~~a~~~~p~il~iDEid 307 (806)
T 1ypw_A 273 EIMSKL-----AGESESNLRKAFEEAEKNAPAIIFIDELD 307 (806)
T ss_dssp HHSSSS-----TTHHHHHHHHHHHHHHHHCSEEEEEESGG
T ss_pred Hhhhhh-----hhhHHHHHHHHHHHHHhcCCcEEEeccHH
Confidence 111111 01112233333444444567899999994
No 70
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.26 E-value=0.0046 Score=54.42 Aligned_cols=41 Identities=17% Similarity=0.078 Sum_probs=32.4
Q ss_pred chhhHHHHHHHHhcC-CCCcEEEEEEecCCCchHHHHHHhhc
Q 040913 172 FERAREEWFDLLIEG-PIGLSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 172 r~~~~~~l~~~L~~~-~~~~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
|++..+.|.+.+... .....+|+|.|..|+|||||++.+..
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 3 LRDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp HHHHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 455667788777754 23568999999999999999998865
No 71
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.25 E-value=0.0018 Score=61.39 Aligned_cols=40 Identities=15% Similarity=0.150 Sum_probs=28.7
Q ss_pred hhHHHHHHHHhcCCC-CcEEEEEEecCCCchHHHHHHhhcC
Q 040913 174 RAREEWFDLLIEGPI-GLSVVAILDSSGFDKTAFAADTYNN 213 (425)
Q Consensus 174 ~~~~~l~~~L~~~~~-~~~vi~IvG~gGvGKTtLa~~v~~~ 213 (425)
...+.+.+++..... ....+.++|++|+|||+||+.+++.
T Consensus 135 ~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~ 175 (308)
T 2qgz_A 135 EAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHE 175 (308)
T ss_dssp HHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHH
Confidence 344455566665322 2456789999999999999999883
No 72
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.23 E-value=0.0038 Score=63.55 Aligned_cols=48 Identities=10% Similarity=-0.012 Sum_probs=39.6
Q ss_pred CCCcccchhhHHHHHHHHhcCC---------------CCcEEEEEEecCCCchHHHHHHhhcC
Q 040913 166 RLDISEFERAREEWFDLLIEGP---------------IGLSVVAILDSSGFDKTAFAADTYNN 213 (425)
Q Consensus 166 ~~~~vGr~~~~~~l~~~L~~~~---------------~~~~vi~IvG~gGvGKTtLa~~v~~~ 213 (425)
-.+++|++..++.+.++|.... ...+.+.|+|++|+||||+|+.+.+.
T Consensus 38 ~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~ 100 (516)
T 1sxj_A 38 LQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQE 100 (516)
T ss_dssp GGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3569999999999999997510 13468889999999999999999873
No 73
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.22 E-value=0.0055 Score=54.87 Aligned_cols=44 Identities=5% Similarity=-0.029 Sum_probs=31.1
Q ss_pred CCcccc---hhhHHHHHHHHhcCCCCcEEEEEEecCCCchHHHHHHhhc
Q 040913 167 LDISEF---ERAREEWFDLLIEGPIGLSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 167 ~~~vGr---~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
.+++|. +...+.+..++..+ ..+.+.|+|++|+||||||+.+.+
T Consensus 28 ~~~~~~~~~~~~~~~l~~~~~~~--~~~~~ll~G~~G~GKT~la~~l~~ 74 (242)
T 3bos_A 28 TSYYPAAGNDELIGALKSAASGD--GVQAIYLWGPVKSGRTHLIHAACA 74 (242)
T ss_dssp TTSCC--CCHHHHHHHHHHHHTC--SCSEEEEECSTTSSHHHHHHHHHH
T ss_pred hhccCCCCCHHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHH
Confidence 456663 34455555555543 356788999999999999999887
No 74
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=96.21 E-value=0.0057 Score=65.24 Aligned_cols=46 Identities=13% Similarity=0.066 Sum_probs=37.1
Q ss_pred CCcccchhhHHHHHHHHhcCC-------CCcEEEEEEecCCCchHHHHHHhhc
Q 040913 167 LDISEFERAREEWFDLLIEGP-------IGLSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 167 ~~~vGr~~~~~~l~~~L~~~~-------~~~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
..++|.+..++.+.+.+.... .....+.++|++|+|||+||+.+.+
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~ 543 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAE 543 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHH
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHH
Confidence 468999999998888876421 2344789999999999999999887
No 75
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=96.20 E-value=0.0023 Score=60.04 Aligned_cols=46 Identities=15% Similarity=0.096 Sum_probs=36.5
Q ss_pred CCcccchhhHHHHHHHHhcC------------CCCcEEEEEEecCCCchHHHHHHhhc
Q 040913 167 LDISEFERAREEWFDLLIEG------------PIGLSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 167 ~~~vGr~~~~~~l~~~L~~~------------~~~~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
..++|.+..++.+...+... ......+.++|++|+|||++|+.+.+
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~ 72 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAK 72 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHH
Confidence 45899999999998877641 11244577999999999999999987
No 76
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=96.13 E-value=0.0028 Score=60.66 Aligned_cols=46 Identities=17% Similarity=0.069 Sum_probs=35.2
Q ss_pred CCcccchhhHHHHHHHHhcC---CCCcEEEEEEecCCCchHHHHHHhhc
Q 040913 167 LDISEFERAREEWFDLLIEG---PIGLSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 167 ~~~vGr~~~~~~l~~~L~~~---~~~~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
..++|.+..++.+-..+... ......+.++|++|+||||||+.+.+
T Consensus 25 ~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~ 73 (334)
T 1in4_A 25 DEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIAS 73 (334)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHH
T ss_pred HHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHH
Confidence 45788877777776665532 22346789999999999999999988
No 77
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.07 E-value=0.0055 Score=58.01 Aligned_cols=69 Identities=12% Similarity=0.073 Sum_probs=42.7
Q ss_pred cEEEEEEecCCCchHHHHHHhhcCccccccc-cchHHHHHHHHHHhCCCCCCCccCCCCHHHHHHHHHHHhcCCeEEEEe
Q 040913 190 LSVVAILDSSGFDKTAFAADTYNNNHVKFYF-DCLAWILDDIIRSLMPPSRVTVIIGEDYKLKKSILRDFLTNKKYFIAL 268 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~~~~~~~~F-~~~~wv~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~kr~LlVL 268 (425)
.+++.|+|++|+||||||.++......+-.| +.. ..... .....+.+.....+.+.+...+ +||+
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~~----------~eE~v---~~~~~~le~~l~~i~~~l~~~~-LLVI 188 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEALGGKDKYATVR----------FGEPL---SGYNTDFNVFVDDIARAMLQHR-VIVI 188 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEEE----------BSCSS---TTCBCCHHHHHHHHHHHHHHCS-EEEE
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEec----------chhhh---hhhhcCHHHHHHHHHHHHhhCC-EEEE
Confidence 4667899999999999999987631111111 110 00000 0011356777777777777666 9999
Q ss_pred cccC
Q 040913 269 DDVC 272 (425)
Q Consensus 269 Ddvw 272 (425)
|++.
T Consensus 189 DsI~ 192 (331)
T 2vhj_A 189 DSLK 192 (331)
T ss_dssp ECCT
T ss_pred eccc
Confidence 9996
No 78
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=96.06 E-value=0.0032 Score=59.47 Aligned_cols=47 Identities=15% Similarity=-0.000 Sum_probs=37.1
Q ss_pred CCcccchhhHHHHHHHHhcCCCCcEEEEEEecCCCchHHHHHHhhcC
Q 040913 167 LDISEFERAREEWFDLLIEGPIGLSVVAILDSSGFDKTAFAADTYNN 213 (425)
Q Consensus 167 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLa~~v~~~ 213 (425)
..++|....+.++.+.+..-......|.|+|.+|+|||++|+.+++.
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~ 48 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHAC 48 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHH
T ss_pred CCcEECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHh
Confidence 45899999999998887653222345679999999999999999873
No 79
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.02 E-value=0.0091 Score=58.69 Aligned_cols=58 Identities=21% Similarity=0.111 Sum_probs=42.0
Q ss_pred CCCCCCCCcccchhhHHHHHHHHhc----C-------CCCcEEEEEEecCCCchHHHHHHhhcCccccccc
Q 040913 161 SEGQPRLDISEFERAREEWFDLLIE----G-------PIGLSVVAILDSSGFDKTAFAADTYNNNHVKFYF 220 (425)
Q Consensus 161 ~~~~~~~~~vGr~~~~~~l~~~L~~----~-------~~~~~vi~IvG~gGvGKTtLa~~v~~~~~~~~~F 220 (425)
.|.+.-.++.|.++.++.|.+.+.- + -...+=|.++|++|.|||.||+++.+ +...+|
T Consensus 176 ~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~--e~~~~f 244 (437)
T 4b4t_I 176 SPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVAN--QTSATF 244 (437)
T ss_dssp SCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHH--HHTCEE
T ss_pred CCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHH--HhCCCE
Confidence 3445556788999988888766532 2 12356688999999999999999998 444444
No 80
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=95.99 E-value=0.0038 Score=67.55 Aligned_cols=45 Identities=11% Similarity=0.112 Sum_probs=38.0
Q ss_pred CCCcccchhhHHHHHHHHhcCCCCcEEEEEEecCCCchHHHHHHhhc
Q 040913 166 RLDISEFERAREEWFDLLIEGPIGLSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 166 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
-..++||+.++.++++.|.... ..-+.++|.+|+||||||+.+.+
T Consensus 169 ld~viGr~~~i~~l~~~l~~~~--~~~vlL~G~pG~GKT~la~~la~ 213 (854)
T 1qvr_A 169 LDPVIGRDEEIRRVIQILLRRT--KNNPVLIGEPGVGKTAIVEGLAQ 213 (854)
T ss_dssp SCCCCSCHHHHHHHHHHHHCSS--CCCCEEEECTTSCHHHHHHHHHH
T ss_pred CcccCCcHHHHHHHHHHHhcCC--CCceEEEcCCCCCHHHHHHHHHH
Confidence 3568999999999999998754 23457899999999999999887
No 81
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=95.94 E-value=0.0074 Score=65.29 Aligned_cols=45 Identities=16% Similarity=0.133 Sum_probs=36.1
Q ss_pred CcccchhhHHHHHHHHhcC-------CCCcEEEEEEecCCCchHHHHHHhhc
Q 040913 168 DISEFERAREEWFDLLIEG-------PIGLSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 168 ~~vGr~~~~~~l~~~L~~~-------~~~~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
.++|.+..++.+...+... ......+.|+|++|+|||++|+.+.+
T Consensus 559 ~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~ 610 (854)
T 1qvr_A 559 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAA 610 (854)
T ss_dssp HSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHH
T ss_pred ccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHH
Confidence 4789999888887777542 12346788999999999999999887
No 82
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=95.93 E-value=0.0075 Score=56.53 Aligned_cols=26 Identities=15% Similarity=0.097 Sum_probs=22.6
Q ss_pred CCCcEEEEEEecCCCchHHHHHHhhc
Q 040913 187 PIGLSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 187 ~~~~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
.....+|+|+|..|+||||||+.+..
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~ 53 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYN 53 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 44678999999999999999988765
No 83
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=95.92 E-value=0.0038 Score=52.94 Aligned_cols=20 Identities=30% Similarity=0.327 Sum_probs=18.7
Q ss_pred EEEEEEecCCCchHHHHHHh
Q 040913 191 SVVAILDSSGFDKTAFAADT 210 (425)
Q Consensus 191 ~vi~IvG~gGvGKTtLa~~v 210 (425)
.+|.|.|++|+||||+|+.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 47899999999999999999
No 84
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=95.86 E-value=0.006 Score=58.99 Aligned_cols=44 Identities=18% Similarity=0.191 Sum_probs=35.0
Q ss_pred cccchhhHHHHHHHHhc-------------CCCCcEEEEEEecCCCchHHHHHHhhc
Q 040913 169 ISEFERAREEWFDLLIE-------------GPIGLSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 169 ~vGr~~~~~~l~~~L~~-------------~~~~~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
++|.+..++.+...+.. .......+.++|++|+|||++|+.+.+
T Consensus 17 i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~ 73 (363)
T 3hws_A 17 VIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLAR 73 (363)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHH
Confidence 68999999988887731 111345688999999999999999988
No 85
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=95.80 E-value=0.0058 Score=52.96 Aligned_cols=24 Identities=17% Similarity=0.152 Sum_probs=21.7
Q ss_pred cEEEEEEecCCCchHHHHHHhhcC
Q 040913 190 LSVVAILDSSGFDKTAFAADTYNN 213 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~~ 213 (425)
..+|+|+|++|+|||||++.+...
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHhc
Confidence 468999999999999999999874
No 86
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=95.72 E-value=0.02 Score=57.76 Aligned_cols=42 Identities=19% Similarity=0.143 Sum_probs=35.7
Q ss_pred CcccchhhHHHHHHHHhcCCCCcEEEEEEecCCCchHHHHHHhhcC
Q 040913 168 DISEFERAREEWFDLLIEGPIGLSVVAILDSSGFDKTAFAADTYNN 213 (425)
Q Consensus 168 ~~vGr~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLa~~v~~~ 213 (425)
.++|.+..++.+...+..+. -|.++|++|+|||+||+.+.+.
T Consensus 23 ~ivGq~~~i~~l~~al~~~~----~VLL~GpPGtGKT~LAraLa~~ 64 (500)
T 3nbx_X 23 GLYERSHAIRLCLLAALSGE----SVFLLGPPGIAKSLIARRLKFA 64 (500)
T ss_dssp TCSSCHHHHHHHHHHHHHTC----EEEEECCSSSSHHHHHHHGGGG
T ss_pred hhHHHHHHHHHHHHHHhcCC----eeEeecCchHHHHHHHHHHHHH
Confidence 38899999988888777643 5778999999999999999984
No 87
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=95.70 E-value=0.0095 Score=59.54 Aligned_cols=48 Identities=23% Similarity=0.194 Sum_probs=36.4
Q ss_pred CCCcccchhhHHHHH---HHHhcCCCCcEEEEEEecCCCchHHHHHHhhcC
Q 040913 166 RLDISEFERAREEWF---DLLIEGPIGLSVVAILDSSGFDKTAFAADTYNN 213 (425)
Q Consensus 166 ~~~~vGr~~~~~~l~---~~L~~~~~~~~vi~IvG~gGvGKTtLa~~v~~~ 213 (425)
..+++|.+..++.+. +++..+....+-+.++|++|+|||+||+.+.+.
T Consensus 36 ~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~ 86 (456)
T 2c9o_A 36 ASGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQE 86 (456)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHHH
T ss_pred hhhccCHHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHHH
Confidence 367999998887654 444444434456789999999999999999883
No 88
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=95.67 E-value=0.005 Score=52.69 Aligned_cols=22 Identities=9% Similarity=0.075 Sum_probs=20.3
Q ss_pred EEEEEEecCCCchHHHHHHhhc
Q 040913 191 SVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 191 ~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
.+|.|.|++|+||||+|+.+.+
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5788999999999999999887
No 89
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=95.65 E-value=0.0079 Score=54.86 Aligned_cols=49 Identities=22% Similarity=0.235 Sum_probs=34.0
Q ss_pred CCCCCcccchhhHHHHHHHHhc--C---------CCCcEEEEEEecCCCchHHHHHHhhcC
Q 040913 164 QPRLDISEFERAREEWFDLLIE--G---------PIGLSVVAILDSSGFDKTAFAADTYNN 213 (425)
Q Consensus 164 ~~~~~~vGr~~~~~~l~~~L~~--~---------~~~~~vi~IvG~gGvGKTtLa~~v~~~ 213 (425)
..-.+++|.+..+.++.+.... . ....+ +.|+|++|+|||||++.+.+.
T Consensus 13 ~~~~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g-~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 13 VTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKG-VLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp CCGGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSE-EEEECCTTSSHHHHHHHHHHH
T ss_pred CCHHHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCe-EEEECCCCCCHHHHHHHHHHH
Confidence 3345688988777666554321 1 11223 889999999999999999883
No 90
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=95.63 E-value=0.0062 Score=52.06 Aligned_cols=22 Identities=14% Similarity=0.335 Sum_probs=20.3
Q ss_pred EEEEEEecCCCchHHHHHHhhc
Q 040913 191 SVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 191 ~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5789999999999999999887
No 91
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=95.61 E-value=0.0075 Score=56.00 Aligned_cols=48 Identities=25% Similarity=0.237 Sum_probs=32.9
Q ss_pred CCCCCcccchhhHHHHHHHHhcC------------CCCcEEEEEEecCCCchHHHHHHhhc
Q 040913 164 QPRLDISEFERAREEWFDLLIEG------------PIGLSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 164 ~~~~~~vGr~~~~~~l~~~L~~~------------~~~~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
+.-.++.|.++.++.|.+.+... ....+ +.++|++|+||||||+.+..
T Consensus 7 ~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~G-vlL~Gp~GtGKTtLakala~ 66 (274)
T 2x8a_A 7 VTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAG-VLLAGPPGCGKTLLAKAVAN 66 (274)
T ss_dssp -----CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSE-EEEESSTTSCHHHHHHHHHH
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCe-EEEECCCCCcHHHHHHHHHH
Confidence 44456888888888877654311 11233 89999999999999999987
No 92
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=95.58 E-value=0.0055 Score=51.95 Aligned_cols=22 Identities=14% Similarity=0.117 Sum_probs=20.0
Q ss_pred EEEEEEecCCCchHHHHHHhhc
Q 040913 191 SVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 191 ~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
.+|.|.|+.|+||||+|+.+..
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999876
No 93
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=95.56 E-value=0.0057 Score=52.80 Aligned_cols=23 Identities=9% Similarity=0.218 Sum_probs=20.7
Q ss_pred cEEEEEEecCCCchHHHHHHhhc
Q 040913 190 LSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
-.+++|+|+.|+|||||++.+..
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~ 27 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLIT 27 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 35899999999999999999876
No 94
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=95.55 E-value=0.0023 Score=61.84 Aligned_cols=110 Identities=15% Similarity=0.097 Sum_probs=62.5
Q ss_pred cEEEEEEecCCCchHHHHHHhhcCccccccccchHHHHHHHHHHhCCCCCCC----ccCCCCHHHHHHHHHHHhcCCeEE
Q 040913 190 LSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWILDDIIRSLMPPSRVT----VIIGEDYKLKKSILRDFLTNKKYF 265 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~~il~~l~~~~~~~----~~~~~~~~~l~~~l~~~l~~kr~L 265 (425)
-.+++|+|+.|+|||||.+.+... +.......+....+-. .+....... .....+.......+...|....=+
T Consensus 123 ~g~i~I~GptGSGKTTlL~~l~g~--~~~~~~~~i~t~ed~~-e~~~~~~~~~v~q~~~~~~~~~~~~~La~aL~~~Pdv 199 (356)
T 3jvv_A 123 RGLVLVTGPTGSGKSTTLAAMLDY--LNNTKYHHILTIEDPI-EFVHESKKCLVNQREVHRDTLGFSEALRSALREDPDI 199 (356)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHH--HHHHCCCEEEEEESSC-CSCCCCSSSEEEEEEBTTTBSCHHHHHHHHTTSCCSE
T ss_pred CCEEEEECCCCCCHHHHHHHHHhc--ccCCCCcEEEEccCcH-HhhhhccccceeeeeeccccCCHHHHHHHHhhhCcCE
Confidence 459999999999999999987652 1100000000000000 000000000 000111133455788889888999
Q ss_pred EEecccCCChhhHHHHHhhCCCCCCCcEEEEecCChhHHHH
Q 040913 266 IALDDVCHNIEIWDDLEEVLPDNQNGSRVLITVINPSLLTS 306 (425)
Q Consensus 266 lVLDdvw~~~~~~~~l~~~l~~~~~gskIivTTR~~~va~~ 306 (425)
|++|.+. +.+.++.+.... ..|..||+||...+.+..
T Consensus 200 illDEp~-d~e~~~~~~~~~---~~G~~vl~t~H~~~~~~~ 236 (356)
T 3jvv_A 200 ILVGEMR-DLETIRLALTAA---ETGHLVFGTLHTTSAAKT 236 (356)
T ss_dssp EEESCCC-SHHHHHHHHHHH---HTTCEEEEEESCSSHHHH
T ss_pred EecCCCC-CHHHHHHHHHHH---hcCCEEEEEEccChHHHH
Confidence 9999998 777776654442 236679999988776643
No 95
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=95.51 E-value=0.0057 Score=51.26 Aligned_cols=23 Identities=9% Similarity=0.052 Sum_probs=21.1
Q ss_pred cEEEEEEecCCCchHHHHHHhhc
Q 040913 190 LSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
-..+.|+|..|+|||||++.+++
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~ 58 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVA 58 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999999987
No 96
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=95.48 E-value=0.0065 Score=53.28 Aligned_cols=23 Identities=13% Similarity=0.108 Sum_probs=21.0
Q ss_pred cEEEEEEecCCCchHHHHHHhhc
Q 040913 190 LSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
..+|.|+|+.|+||||+++.+..
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 46899999999999999999886
No 97
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=95.48 E-value=0.0094 Score=50.87 Aligned_cols=24 Identities=21% Similarity=0.325 Sum_probs=21.2
Q ss_pred CcEEEEEEecCCCchHHHHHHhhc
Q 040913 189 GLSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 189 ~~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
...+|.|+|+.|+||||+++.+..
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 357899999999999999998875
No 98
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=95.42 E-value=0.0086 Score=52.55 Aligned_cols=23 Identities=22% Similarity=0.182 Sum_probs=21.3
Q ss_pred cEEEEEEecCCCchHHHHHHhhc
Q 040913 190 LSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
..+|.|+|+.|+|||||++.+..
T Consensus 25 g~~i~l~G~sGsGKSTl~~~La~ 47 (200)
T 3uie_A 25 GCVIWVTGLSGSGKSTLACALNQ 47 (200)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 67999999999999999999877
No 99
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=95.40 E-value=0.0061 Score=51.89 Aligned_cols=22 Identities=9% Similarity=0.166 Sum_probs=20.2
Q ss_pred EEEEEEecCCCchHHHHHHhhc
Q 040913 191 SVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 191 ~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
.+|+|+|+.|+|||||++.+..
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~ 26 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQ 26 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999877
No 100
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=95.40 E-value=0.0099 Score=55.09 Aligned_cols=50 Identities=22% Similarity=0.223 Sum_probs=35.2
Q ss_pred CCCCCCcccchhhHHHHHHHHhc--C---------CCCcEEEEEEecCCCchHHHHHHhhcC
Q 040913 163 GQPRLDISEFERAREEWFDLLIE--G---------PIGLSVVAILDSSGFDKTAFAADTYNN 213 (425)
Q Consensus 163 ~~~~~~~vGr~~~~~~l~~~L~~--~---------~~~~~vi~IvG~gGvGKTtLa~~v~~~ 213 (425)
...-.+++|.+..+.++.+.... . ..... +.|+|++|+|||||++.+.+.
T Consensus 36 ~~~~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~g-vll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 36 KVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKG-VLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp CCCGGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCE-EEEECCTTSSHHHHHHHHHHH
T ss_pred CCCHHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCe-EEEECCCcChHHHHHHHHHHH
Confidence 34456789988777776554331 1 11123 889999999999999999883
No 101
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=95.32 E-value=0.01 Score=52.39 Aligned_cols=24 Identities=21% Similarity=0.147 Sum_probs=21.5
Q ss_pred CcEEEEEEecCCCchHHHHHHhhc
Q 040913 189 GLSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 189 ~~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
...+|+|+|+.|+|||||++.+..
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~ 28 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALAR 28 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 357899999999999999998876
No 102
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=95.30 E-value=0.0087 Score=52.42 Aligned_cols=23 Identities=22% Similarity=0.231 Sum_probs=20.6
Q ss_pred cEEEEEEecCCCchHHHHHHhhc
Q 040913 190 LSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
-.+++|+|+.|+|||||++.+..
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~ 29 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVK 29 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECcCCCCHHHHHHHHHh
Confidence 35899999999999999998875
No 103
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=95.29 E-value=0.0094 Score=51.45 Aligned_cols=22 Identities=14% Similarity=0.188 Sum_probs=20.2
Q ss_pred EEEEEEecCCCchHHHHHHhhc
Q 040913 191 SVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 191 ~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
.+|.|.|+.|+||||+|+.+.+
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999877
No 104
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=95.28 E-value=0.0098 Score=56.52 Aligned_cols=42 Identities=10% Similarity=-0.017 Sum_probs=35.5
Q ss_pred CCcccchhhHHHHHHHHhcCCCCcEEEEEEecCCCchHHHHHHhhc
Q 040913 167 LDISEFERAREEWFDLLIEGPIGLSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 167 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
..++|++..++.+...+..+. -+.++|++|+|||+||+.+.+
T Consensus 27 ~~i~g~~~~~~~l~~~l~~~~----~vll~G~pGtGKT~la~~la~ 68 (331)
T 2r44_A 27 KVVVGQKYMINRLLIGICTGG----HILLEGVPGLAKTLSVNTLAK 68 (331)
T ss_dssp TTCCSCHHHHHHHHHHHHHTC----CEEEESCCCHHHHHHHHHHHH
T ss_pred cceeCcHHHHHHHHHHHHcCC----eEEEECCCCCcHHHHHHHHHH
Confidence 358899999999888877642 477899999999999999987
No 105
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=95.26 E-value=0.011 Score=51.18 Aligned_cols=23 Identities=9% Similarity=0.137 Sum_probs=21.0
Q ss_pred cEEEEEEecCCCchHHHHHHhhc
Q 040913 190 LSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
..+|.|.|++|+||||+++.+..
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999999876
No 106
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=95.24 E-value=0.0079 Score=51.83 Aligned_cols=23 Identities=17% Similarity=0.255 Sum_probs=20.6
Q ss_pred cEEEEEEecCCCchHHHHHHhhc
Q 040913 190 LSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
.+.|.|+|+.|+||||+|+.+..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45788999999999999999876
No 107
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=95.23 E-value=0.03 Score=54.05 Aligned_cols=23 Identities=13% Similarity=0.151 Sum_probs=20.5
Q ss_pred cEEEEEEecCCCchHHHHHHhhc
Q 040913 190 LSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
-.+++|+|+.|.|||||.+.+..
T Consensus 54 Gei~~IiGpnGaGKSTLlr~i~G 76 (366)
T 3tui_C 54 GQIYGVIGASGAGKSTLIRCVNL 76 (366)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCEEEEEcCCCchHHHHHHHHhc
Confidence 46899999999999999998864
No 108
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=95.22 E-value=0.013 Score=56.38 Aligned_cols=82 Identities=15% Similarity=0.104 Sum_probs=47.6
Q ss_pred CcEEEEEEecCCCchHHHHHHhhcCccccccccchHHH------HHHHHHHhCCCCCCC-ccCCCCHHHHHHHHHHHhc-
Q 040913 189 GLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWI------LDDIIRSLMPPSRVT-VIIGEDYKLKKSILRDFLT- 260 (425)
Q Consensus 189 ~~~vi~IvG~gGvGKTtLa~~v~~~~~~~~~F~~~~wv------~~~il~~l~~~~~~~-~~~~~~~~~l~~~l~~~l~- 260 (425)
.-.++.|.|++|+|||||+.++........ ..++|+ -......++...... .....+.++....+...++
T Consensus 60 ~G~i~~I~GppGsGKSTLal~la~~~~~~g--g~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e~~l~~~~~l~~~ 137 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALHAIAEAQKMG--GVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGEQALEIVDELVRS 137 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHHHHTT--CCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhcC--CeEEEEecccccchHHHHHcCCchhhhhhhhccCHHHHHHHHHHHhhh
Confidence 457999999999999999988875311100 011122 111344444332211 1123456677666666664
Q ss_pred CCeEEEEecccC
Q 040913 261 NKKYFIALDDVC 272 (425)
Q Consensus 261 ~kr~LlVLDdvw 272 (425)
.+.-++|+|.+-
T Consensus 138 ~~~dlvVIDSi~ 149 (356)
T 3hr8_A 138 GVVDLIVVDSVA 149 (356)
T ss_dssp SCCSEEEEECTT
T ss_pred cCCCeEEehHhh
Confidence 455689999884
No 109
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=95.19 E-value=0.012 Score=51.68 Aligned_cols=25 Identities=16% Similarity=0.178 Sum_probs=22.2
Q ss_pred CcEEEEEEecCCCchHHHHHHhhcC
Q 040913 189 GLSVVAILDSSGFDKTAFAADTYNN 213 (425)
Q Consensus 189 ~~~vi~IvG~gGvGKTtLa~~v~~~ 213 (425)
...+|+|+|+.|+||||+++.+...
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 3678999999999999999998773
No 110
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=95.16 E-value=0.011 Score=51.18 Aligned_cols=22 Identities=14% Similarity=0.157 Sum_probs=20.1
Q ss_pred EEEEEEecCCCchHHHHHHhhc
Q 040913 191 SVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 191 ~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
.+++|+|+.|+|||||++.+..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 4789999999999999999975
No 111
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=95.15 E-value=0.016 Score=56.23 Aligned_cols=45 Identities=16% Similarity=0.147 Sum_probs=34.3
Q ss_pred CcccchhhHHHHHHHHhc----------------------------CCCCcEEEEEEecCCCchHHHHHHhhc
Q 040913 168 DISEFERAREEWFDLLIE----------------------------GPIGLSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 168 ~~vGr~~~~~~l~~~L~~----------------------------~~~~~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
.++|.+..++.|...+.. .......+.++|++|+|||++|+.+.+
T Consensus 22 ~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~ 94 (376)
T 1um8_A 22 YVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAK 94 (376)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred HccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHH
Confidence 478988888888777621 011234578999999999999999987
No 112
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=95.14 E-value=0.0097 Score=52.19 Aligned_cols=23 Identities=26% Similarity=0.293 Sum_probs=20.9
Q ss_pred cEEEEEEecCCCchHHHHHHhhc
Q 040913 190 LSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
..+|+|+|+.|+|||||++.+..
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999999876
No 113
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=95.11 E-value=0.013 Score=51.15 Aligned_cols=25 Identities=20% Similarity=0.101 Sum_probs=22.6
Q ss_pred CcEEEEEEecCCCchHHHHHHhhcC
Q 040913 189 GLSVVAILDSSGFDKTAFAADTYNN 213 (425)
Q Consensus 189 ~~~vi~IvG~gGvGKTtLa~~v~~~ 213 (425)
...+|+|+|+.|+||||+++.+...
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHC
Confidence 4689999999999999999999873
No 114
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=95.09 E-value=0.022 Score=53.13 Aligned_cols=38 Identities=16% Similarity=0.238 Sum_probs=27.3
Q ss_pred hHHHHHHHHhcC---CCCcEEEEEEecCCCchHHHHHHhhc
Q 040913 175 AREEWFDLLIEG---PIGLSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 175 ~~~~l~~~L~~~---~~~~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
..++++..+... .....+|.|.|++|+||||+|+.+..
T Consensus 15 ~~~~~~~~~l~~~~~~~~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 15 RLNDNLEELIQGKKAVESPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp HHHHHHHHHHTTCCCCSSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 334444444433 23467899999999999999999876
No 115
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=95.06 E-value=0.011 Score=52.26 Aligned_cols=24 Identities=13% Similarity=0.261 Sum_probs=21.4
Q ss_pred cEEEEEEecCCCchHHHHHHhhcC
Q 040913 190 LSVVAILDSSGFDKTAFAADTYNN 213 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~~ 213 (425)
..+|+|+|+.|+|||||++.+...
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHHhh
Confidence 568999999999999999998763
No 116
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=95.06 E-value=0.011 Score=52.80 Aligned_cols=22 Identities=23% Similarity=0.262 Sum_probs=20.3
Q ss_pred EEEEEEecCCCchHHHHHHhhc
Q 040913 191 SVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 191 ~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
.+|+|+|+.|+||||+++.+..
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999876
No 117
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=95.04 E-value=0.011 Score=51.77 Aligned_cols=23 Identities=13% Similarity=0.228 Sum_probs=20.7
Q ss_pred cEEEEEEecCCCchHHHHHHhhc
Q 040913 190 LSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
..+|+|+|+.|+||||+++.+..
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~ 28 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFE 28 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999876
No 118
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=95.04 E-value=0.022 Score=50.54 Aligned_cols=36 Identities=19% Similarity=0.248 Sum_probs=26.2
Q ss_pred HHHHHHHHhcCCCCcEEEEEEecCCCchHHHHHHhhcC
Q 040913 176 REEWFDLLIEGPIGLSVVAILDSSGFDKTAFAADTYNN 213 (425)
Q Consensus 176 ~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLa~~v~~~ 213 (425)
.+.+-..+... ....|.|+|.+|+|||||+..+...
T Consensus 26 a~~~r~~~~~~--~~~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 26 ADKNRKLLNKH--GVVAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp HHHHHHHHHHT--TCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHhC--CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 34444444332 4788999999999999999887763
No 119
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=95.03 E-value=0.012 Score=51.69 Aligned_cols=22 Identities=14% Similarity=0.151 Sum_probs=19.9
Q ss_pred EEEEEEecCCCchHHHHHHhhc
Q 040913 191 SVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 191 ~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
.+|+|+|+.|+||||+++.+..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3699999999999999999876
No 120
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=95.02 E-value=0.011 Score=51.50 Aligned_cols=21 Identities=24% Similarity=0.408 Sum_probs=19.4
Q ss_pred EEEEEecCCCchHHHHHHhhc
Q 040913 192 VVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 192 vi~IvG~gGvGKTtLa~~v~~ 212 (425)
.|.|.|+.|+||||+++.+.+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 589999999999999999877
No 121
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=95.01 E-value=0.0092 Score=52.32 Aligned_cols=23 Identities=13% Similarity=0.228 Sum_probs=20.7
Q ss_pred cEEEEEEecCCCchHHHHHHhhc
Q 040913 190 LSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
..+|.|.|+.|+||||+|+.+..
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999998876
No 122
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=95.01 E-value=0.022 Score=54.11 Aligned_cols=39 Identities=10% Similarity=0.024 Sum_probs=27.4
Q ss_pred hhHHHHHHHHhcC--CCCcEEEEEEecCCCchHHHHHHhhc
Q 040913 174 RAREEWFDLLIEG--PIGLSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 174 ~~~~~l~~~L~~~--~~~~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
.....+...+... .....+|+|.|..|+|||||++.+..
T Consensus 74 ~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 74 QTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp HHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3334444334333 34577999999999999999988754
No 123
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=95.01 E-value=0.011 Score=53.10 Aligned_cols=108 Identities=16% Similarity=0.034 Sum_probs=56.3
Q ss_pred cEEEEEEecCCCchHHHHHHhhcCccccc----cccchHHHHHHHHHHhCCCCCCC--ccCCCCHHHHHHHHHHHhcCCe
Q 040913 190 LSVVAILDSSGFDKTAFAADTYNNNHVKF----YFDCLAWILDDIIRSLMPPSRVT--VIIGEDYKLKKSILRDFLTNKK 263 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~~~~~~~----~F~~~~wv~~~il~~l~~~~~~~--~~~~~~~~~l~~~l~~~l~~kr 263 (425)
-.++.|.|..|+||||++..+.+...... .|..... .+ -..++....... ........++.+.+.+.+.+.+
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d-~r-~~~~i~srlG~~~~~~~~~~~~~i~~~i~~~~~~~~ 89 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKID-TR-SIRNIQSRTGTSLPSVEVESAPEILNYIMSNSFNDE 89 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC-GG-GCSSCCCCCCCSSCCEEESSTHHHHHHHHSTTSCTT
T ss_pred cEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccC-ch-HHHHHHHhcCCCccccccCCHHHHHHHHHHHhhCCC
Confidence 57888999999999998876654221110 1110000 00 001122221110 1112234556666666555555
Q ss_pred E-EEEecccCC-ChhhHHHHHhhCCCCCCCcEEEEecCChh
Q 040913 264 Y-FIALDDVCH-NIEIWDDLEEVLPDNQNGSRVLITVINPS 302 (425)
Q Consensus 264 ~-LlVLDdvw~-~~~~~~~l~~~l~~~~~gskIivTTR~~~ 302 (425)
+ +||+|.+.+ +.+..+.+...- + .|-.||+|-+..+
T Consensus 90 ~dvViIDEaQ~l~~~~ve~l~~L~-~--~gi~Vil~Gl~~d 127 (223)
T 2b8t_A 90 TKVIGIDEVQFFDDRICEVANILA-E--NGFVVIISGLDKN 127 (223)
T ss_dssp CCEEEECSGGGSCTHHHHHHHHHH-H--TTCEEEEECCSBC
T ss_pred CCEEEEecCccCcHHHHHHHHHHH-h--CCCeEEEEecccc
Confidence 5 999999963 234444443322 2 2788999998544
No 124
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=95.01 E-value=0.011 Score=50.86 Aligned_cols=22 Identities=18% Similarity=0.229 Sum_probs=20.3
Q ss_pred EEEEEEecCCCchHHHHHHhhc
Q 040913 191 SVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 191 ~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
.+|.|.|++|+||||+++.+.+
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999877
No 125
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=94.99 E-value=0.013 Score=50.64 Aligned_cols=23 Identities=26% Similarity=0.211 Sum_probs=20.6
Q ss_pred cEEEEEEecCCCchHHHHHHhhc
Q 040913 190 LSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
..+|.|.|+.|+||||+|+.+..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999998876
No 126
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=94.99 E-value=0.013 Score=50.70 Aligned_cols=22 Identities=18% Similarity=0.286 Sum_probs=19.4
Q ss_pred EEEEEecCCCchHHHHHHhhcC
Q 040913 192 VVAILDSSGFDKTAFAADTYNN 213 (425)
Q Consensus 192 vi~IvG~gGvGKTtLa~~v~~~ 213 (425)
.++|+|+.|+|||||++.+...
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999988763
No 127
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=94.97 E-value=0.0093 Score=51.72 Aligned_cols=22 Identities=18% Similarity=0.305 Sum_probs=19.9
Q ss_pred EEEEEEecCCCchHHHHHHhhc
Q 040913 191 SVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 191 ~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
++++|+|+.|+|||||++.+..
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~ 23 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 4789999999999999999875
No 128
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=94.97 E-value=0.014 Score=51.33 Aligned_cols=22 Identities=23% Similarity=0.194 Sum_probs=20.1
Q ss_pred EEEEEEecCCCchHHHHHHhhc
Q 040913 191 SVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 191 ~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
.+|+|+|+.|+||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999866
No 129
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=94.96 E-value=0.024 Score=54.41 Aligned_cols=43 Identities=16% Similarity=0.188 Sum_probs=31.5
Q ss_pred ccchhhHHHHHHHHhcC--CCCcEEEEEEecCCCchHHHHHHhhc
Q 040913 170 SEFERAREEWFDLLIEG--PIGLSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 170 vGr~~~~~~l~~~L~~~--~~~~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
|+.+.-.+++++.+... ......|.++|++|+||||+++.+..
T Consensus 2 ~~~~~L~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~ 46 (359)
T 2ga8_A 2 VDTHKLADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQ 46 (359)
T ss_dssp CCHHHHHHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHH
Confidence 44555666677666432 23456789999999999999998877
No 130
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=94.95 E-value=0.013 Score=55.89 Aligned_cols=45 Identities=11% Similarity=0.035 Sum_probs=32.7
Q ss_pred CCCcccchhhHHHHHHHHhcCCCCcEEEEEEecCCCchHHHHHHhhc
Q 040913 166 RLDISEFERAREEWFDLLIEGPIGLSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 166 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
-.+++|.+..+..+...+.... ..-+-++|.+|+|||+||+.+.+
T Consensus 23 f~~i~G~~~~~~~l~~~~~~~~--~~~vLl~G~~GtGKT~la~~la~ 67 (350)
T 1g8p_A 23 FSAIVGQEDMKLALLLTAVDPG--IGGVLVFGDRGTGKSTAVRALAA 67 (350)
T ss_dssp GGGSCSCHHHHHHHHHHHHCGG--GCCEEEECCGGGCTTHHHHHHHH
T ss_pred chhccChHHHHHHHHHHhhCCC--CceEEEECCCCccHHHHHHHHHH
Confidence 3458998886666544444322 22378999999999999999987
No 131
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=94.91 E-value=0.019 Score=52.38 Aligned_cols=40 Identities=18% Similarity=0.091 Sum_probs=29.0
Q ss_pred hhhHHHHHHHHhcC---CCCcEEEEEEecCCCchHHHHHHhhc
Q 040913 173 ERAREEWFDLLIEG---PIGLSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 173 ~~~~~~l~~~L~~~---~~~~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
+...+.++..+..+ .....+|.++|++|+||||+|+.+..
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 12 KHALARNLRSLTRGKKSSKQPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp HHHHHHHHHHHHTTCCCCSSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCCcccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 33445555555543 23467899999999999999999876
No 132
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=94.90 E-value=0.013 Score=53.58 Aligned_cols=22 Identities=18% Similarity=0.081 Sum_probs=20.0
Q ss_pred EEEEEEecCCCchHHHHHHhhc
Q 040913 191 SVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 191 ~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
.+|.|.|+.|+||||||+.+..
T Consensus 2 ~li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHh
Confidence 4789999999999999999876
No 133
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=94.89 E-value=0.01 Score=52.21 Aligned_cols=24 Identities=13% Similarity=0.256 Sum_probs=21.2
Q ss_pred CcEEEEEEecCCCchHHHHHHhhc
Q 040913 189 GLSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 189 ~~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
...+|.|+|++|+|||||++.+..
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~ 34 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLS 34 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHHH
Confidence 356889999999999999999876
No 134
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=94.87 E-value=0.021 Score=51.87 Aligned_cols=37 Identities=11% Similarity=-0.115 Sum_probs=26.7
Q ss_pred HHHHHHHHhcCCCCcEEEEEEecCCCchHHHHHHhhc
Q 040913 176 REEWFDLLIEGPIGLSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 176 ~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
..++...+.........|.|.|++|+||||+|+.+.+
T Consensus 15 ~~~~~~~~~~~~~~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 15 LNELKRRYACLSKPDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp HHHHHHHHHHHTSCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3344433333333567899999999999999999876
No 135
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=94.87 E-value=0.01 Score=52.04 Aligned_cols=23 Identities=17% Similarity=0.258 Sum_probs=19.9
Q ss_pred cEEEEEEecCCCchHHHHHHhhc
Q 040913 190 LSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
.++++|+|+.|+|||||++.+..
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 35789999999999999999875
No 136
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=94.86 E-value=0.011 Score=50.78 Aligned_cols=23 Identities=17% Similarity=0.333 Sum_probs=20.6
Q ss_pred cEEEEEEecCCCchHHHHHHhhc
Q 040913 190 LSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
.++|.|.|++|+||||+++.+..
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHH
Confidence 45788999999999999999886
No 137
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=94.85 E-value=0.014 Score=50.54 Aligned_cols=23 Identities=9% Similarity=0.195 Sum_probs=20.9
Q ss_pred cEEEEEEecCCCchHHHHHHhhc
Q 040913 190 LSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
..+|.|.|+.|+||||+|+.+.+
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999876
No 138
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=94.84 E-value=0.015 Score=53.07 Aligned_cols=24 Identities=8% Similarity=0.122 Sum_probs=21.7
Q ss_pred CcEEEEEEecCCCchHHHHHHhhc
Q 040913 189 GLSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 189 ~~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
...+|+|.|+.|+||||+|+.+..
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999998866
No 139
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=94.84 E-value=0.019 Score=50.80 Aligned_cols=41 Identities=29% Similarity=0.292 Sum_probs=29.1
Q ss_pred cchhhHHHHHHHHhcCCCCcEEEEEEecCCCchHHHHHHhhcC
Q 040913 171 EFERAREEWFDLLIEGPIGLSVVAILDSSGFDKTAFAADTYNN 213 (425)
Q Consensus 171 Gr~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLa~~v~~~ 213 (425)
+.++..+.+...+... ...+|.|+|.+|+|||||+..+...
T Consensus 13 ~~~~~~~~~~~~~~~~--~~~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 13 ENKRLAEKNREALRES--GTVAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp HHHHHHHHHHHHHHHH--TCEEEEEEECTTSCHHHHHHHHHHH
T ss_pred hcHHHHHHHHHhhccc--CceEEEEEcCCCCCHHHHHHHHHHH
Confidence 3344455555554433 3789999999999999999887653
No 140
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=94.81 E-value=0.011 Score=50.61 Aligned_cols=21 Identities=14% Similarity=0.172 Sum_probs=19.5
Q ss_pred EEEEEecCCCchHHHHHHhhc
Q 040913 192 VVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 192 vi~IvG~gGvGKTtLa~~v~~ 212 (425)
.|.|.|++|+||||+|+.+..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 588999999999999999876
No 141
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=94.81 E-value=0.016 Score=54.76 Aligned_cols=25 Identities=12% Similarity=-0.020 Sum_probs=22.1
Q ss_pred CCcEEEEEEecCCCchHHHHHHhhc
Q 040913 188 IGLSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 188 ~~~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
....+|+|+|..|+|||||++.+..
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHh
Confidence 3468999999999999999998875
No 142
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=94.80 E-value=0.017 Score=50.59 Aligned_cols=24 Identities=21% Similarity=0.267 Sum_probs=21.7
Q ss_pred CcEEEEEEecCCCchHHHHHHhhc
Q 040913 189 GLSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 189 ~~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
...+|.|.|+.|+||||+++.+.+
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999999876
No 143
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=94.72 E-value=0.016 Score=49.75 Aligned_cols=23 Identities=22% Similarity=0.137 Sum_probs=20.6
Q ss_pred cEEEEEEecCCCchHHHHHHhhc
Q 040913 190 LSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
...|.+.|+.|+||||+++.+.+
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999999999876
No 144
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=94.71 E-value=0.016 Score=51.13 Aligned_cols=23 Identities=17% Similarity=0.088 Sum_probs=20.7
Q ss_pred cEEEEEEecCCCchHHHHHHhhc
Q 040913 190 LSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
-.+++|+|+.|+|||||++.+..
T Consensus 20 Gei~~l~GpnGsGKSTLl~~l~g 42 (207)
T 1znw_A 20 GRVVVLSGPSAVGKSTVVRCLRE 42 (207)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 45899999999999999998865
No 145
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=94.70 E-value=0.016 Score=52.66 Aligned_cols=23 Identities=22% Similarity=0.199 Sum_probs=21.1
Q ss_pred cEEEEEEecCCCchHHHHHHhhc
Q 040913 190 LSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
..+|+|+|+.|+|||||++.+.+
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~ 49 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQ 49 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999999984
No 146
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=94.70 E-value=0.01 Score=51.75 Aligned_cols=22 Identities=18% Similarity=0.305 Sum_probs=19.3
Q ss_pred EEEEEEecCCCchHHHHHHhhc
Q 040913 191 SVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 191 ~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
+.|.|+|++|+|||||++.+..
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~ 23 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3477999999999999999876
No 147
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=94.68 E-value=0.017 Score=49.83 Aligned_cols=24 Identities=25% Similarity=0.119 Sum_probs=21.6
Q ss_pred CcEEEEEEecCCCchHHHHHHhhc
Q 040913 189 GLSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 189 ~~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
...+|.|.|++|+||||+++.+..
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~ 35 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLAD 35 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 357899999999999999999877
No 148
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=94.68 E-value=0.017 Score=49.97 Aligned_cols=23 Identities=22% Similarity=0.109 Sum_probs=20.9
Q ss_pred cEEEEEEecCCCchHHHHHHhhc
Q 040913 190 LSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
...|.|+|+.|+||||+++.+.+
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~ 32 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAA 32 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999999877
No 149
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=94.66 E-value=0.019 Score=52.04 Aligned_cols=24 Identities=4% Similarity=0.094 Sum_probs=21.3
Q ss_pred CcEEEEEEecCCCchHHHHHHhhc
Q 040913 189 GLSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 189 ~~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
...+|+|.|+.|+|||||++.+..
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 357899999999999999998865
No 150
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=94.66 E-value=0.018 Score=50.47 Aligned_cols=23 Identities=17% Similarity=0.058 Sum_probs=20.7
Q ss_pred cEEEEEEecCCCchHHHHHHhhc
Q 040913 190 LSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
..+|.|.|+.|+||||+|+.+.+
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 36899999999999999999876
No 151
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=94.65 E-value=0.018 Score=49.59 Aligned_cols=23 Identities=26% Similarity=0.274 Sum_probs=21.0
Q ss_pred cEEEEEEecCCCchHHHHHHhhc
Q 040913 190 LSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
..+|.|.|+.|+||||+|+.+..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999876
No 152
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=94.64 E-value=0.016 Score=48.99 Aligned_cols=23 Identities=13% Similarity=0.186 Sum_probs=20.6
Q ss_pred cEEEEEEecCCCchHHHHHHhhc
Q 040913 190 LSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
..+|.|.|+.|+||||+|+.+..
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHHH
Confidence 57899999999999999999877
No 153
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=94.63 E-value=0.018 Score=52.87 Aligned_cols=23 Identities=13% Similarity=0.359 Sum_probs=20.9
Q ss_pred cEEEEEEecCCCchHHHHHHhhc
Q 040913 190 LSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
..+|.|.|++|+||||+|+.+..
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 56899999999999999999876
No 154
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=94.63 E-value=0.027 Score=53.65 Aligned_cols=24 Identities=25% Similarity=0.167 Sum_probs=21.4
Q ss_pred CcEEEEEEecCCCchHHHHHHhhc
Q 040913 189 GLSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 189 ~~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
...+++|+|+.|+||||+++.+..
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag 151 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLAN 151 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999988764
No 155
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=94.63 E-value=0.012 Score=50.74 Aligned_cols=22 Identities=9% Similarity=0.139 Sum_probs=19.8
Q ss_pred EEEEEEecCCCchHHHHHHhhc
Q 040913 191 SVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 191 ~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3589999999999999999876
No 156
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=94.62 E-value=0.016 Score=49.56 Aligned_cols=23 Identities=13% Similarity=0.098 Sum_probs=21.0
Q ss_pred cEEEEEEecCCCchHHHHHHhhc
Q 040913 190 LSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
.+++.|+|..|+|||||+..+..
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 67899999999999999988876
No 157
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=94.62 E-value=0.016 Score=50.31 Aligned_cols=23 Identities=13% Similarity=0.200 Sum_probs=20.9
Q ss_pred cEEEEEEecCCCchHHHHHHhhc
Q 040913 190 LSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
..+|.|.|+.|+||||+|+.+..
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999877
No 158
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=94.57 E-value=0.034 Score=53.56 Aligned_cols=37 Identities=14% Similarity=0.043 Sum_probs=28.3
Q ss_pred HHHHHHHHhcCCCCcEEEEEEecCCCchHHHHHHhhc
Q 040913 176 REEWFDLLIEGPIGLSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 176 ~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
...+.+.+........+|+|+|.+|+|||||+..+..
T Consensus 65 ~~~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~ 101 (355)
T 3p32_A 65 AQQLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGM 101 (355)
T ss_dssp HHHHHHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHHHHhHhhcCCceEEEEECCCCCCHHHHHHHHHH
Confidence 4455555654445678999999999999999988753
No 159
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=94.51 E-value=0.018 Score=52.54 Aligned_cols=23 Identities=17% Similarity=0.211 Sum_probs=21.1
Q ss_pred cEEEEEEecCCCchHHHHHHhhc
Q 040913 190 LSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
..+|+|+|+.|+||||+++.+..
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~ 49 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAE 49 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999985
No 160
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=94.48 E-value=0.014 Score=49.48 Aligned_cols=22 Identities=9% Similarity=0.178 Sum_probs=19.9
Q ss_pred EEEEEEecCCCchHHHHHHhhc
Q 040913 191 SVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 191 ~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
.+|.|.|+.|+||||+|+.+.+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999877
No 161
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=94.44 E-value=0.023 Score=48.01 Aligned_cols=24 Identities=17% Similarity=0.140 Sum_probs=21.5
Q ss_pred CcEEEEEEecCCCchHHHHHHhhc
Q 040913 189 GLSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 189 ~~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
.-.+++++|+.|.|||||.+.+..
T Consensus 32 ~Ge~v~L~G~nGaGKTTLlr~l~g 55 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTTLTRGMLQ 55 (158)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999877
No 162
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=94.42 E-value=0.014 Score=50.04 Aligned_cols=23 Identities=22% Similarity=0.120 Sum_probs=16.7
Q ss_pred cEEEEEEecCCCchHHHHHHhhc
Q 040913 190 LSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
..+|.|.|+.|+||||+|+.+..
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999876
No 163
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=94.41 E-value=0.017 Score=51.57 Aligned_cols=23 Identities=22% Similarity=0.284 Sum_probs=20.4
Q ss_pred cEEEEEEecCCCchHHHHHHhhc
Q 040913 190 LSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
-.+++|+|+.|+|||||++.+..
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g 45 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLN 45 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 45799999999999999998865
No 164
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=94.40 E-value=0.02 Score=49.43 Aligned_cols=21 Identities=29% Similarity=0.347 Sum_probs=19.4
Q ss_pred EEEEEecCCCchHHHHHHhhc
Q 040913 192 VVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 192 vi~IvG~gGvGKTtLa~~v~~ 212 (425)
+|+|.|+.|+||||+++.+.+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999876
No 165
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=94.40 E-value=0.02 Score=48.29 Aligned_cols=21 Identities=5% Similarity=-0.064 Sum_probs=19.4
Q ss_pred EEEEEecCCCchHHHHHHhhc
Q 040913 192 VVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 192 vi~IvG~gGvGKTtLa~~v~~ 212 (425)
.|.|.|+.|+||||+|+.+.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999877
No 166
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=94.36 E-value=0.1 Score=51.33 Aligned_cols=24 Identities=21% Similarity=0.277 Sum_probs=21.9
Q ss_pred CcEEEEEEecCCCchHHHHHHhhc
Q 040913 189 GLSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 189 ~~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
...+|.|+|++|+||||+|+.+..
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999999877
No 167
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=94.33 E-value=0.021 Score=50.15 Aligned_cols=24 Identities=13% Similarity=0.351 Sum_probs=21.3
Q ss_pred CcEEEEEEecCCCchHHHHHHhhc
Q 040913 189 GLSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 189 ~~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
..++|.|+|+.|+|||||++.+..
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~ 41 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLS 41 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEEECcCCCCHHHHHHHHHh
Confidence 357899999999999999999876
No 168
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=94.33 E-value=0.028 Score=54.09 Aligned_cols=82 Identities=17% Similarity=0.098 Sum_probs=44.5
Q ss_pred CcEEEEEEecCCCchHHHHHHhhcCccccccccchHHH------HHHHHHHhCCCCCCC-ccCCCCHHHHHHHHHHHhcC
Q 040913 189 GLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWI------LDDIIRSLMPPSRVT-VIIGEDYKLKKSILRDFLTN 261 (425)
Q Consensus 189 ~~~vi~IvG~gGvGKTtLa~~v~~~~~~~~~F~~~~wv------~~~il~~l~~~~~~~-~~~~~~~~~l~~~l~~~l~~ 261 (425)
.-.++.|.|.+|+||||||.++........ ..++|+ -......++.....- -....+.++....+....+.
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~~~~g--~~vlyi~~E~~~~~~~a~~lG~~~~~l~i~~~~~~e~~l~~~~~l~~~ 137 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANAQAAG--GIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQALEIADMLVRS 137 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHTT--CCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCC--CeEEEEECCCCcCHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHHhc
Confidence 356899999999999999988764211000 011122 011233333221110 11223556666666555543
Q ss_pred -CeEEEEecccC
Q 040913 262 -KKYFIALDDVC 272 (425)
Q Consensus 262 -kr~LlVLDdvw 272 (425)
+.-+||+|.+-
T Consensus 138 ~~~~lIVIDsl~ 149 (349)
T 2zr9_A 138 GALDIIVIDSVA 149 (349)
T ss_dssp TCCSEEEEECGG
T ss_pred CCCCEEEEcChH
Confidence 55699999985
No 169
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=94.32 E-value=0.021 Score=49.92 Aligned_cols=23 Identities=22% Similarity=0.140 Sum_probs=20.7
Q ss_pred cEEEEEEecCCCchHHHHHHhhc
Q 040913 190 LSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
..+|.|.|+.|+||||+|+.+..
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999876
No 170
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=94.31 E-value=0.023 Score=50.01 Aligned_cols=23 Identities=4% Similarity=0.007 Sum_probs=20.8
Q ss_pred cEEEEEEecCCCchHHHHHHhhc
Q 040913 190 LSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
..+|.|.|+.|+||||+++.+.+
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999876
No 171
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=94.30 E-value=0.049 Score=51.28 Aligned_cols=24 Identities=17% Similarity=0.032 Sum_probs=21.7
Q ss_pred CcEEEEEEecCCCchHHHHHHhhc
Q 040913 189 GLSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 189 ~~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
...+|+|+|..|+|||||++.+..
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999998876
No 172
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=94.30 E-value=0.032 Score=48.81 Aligned_cols=113 Identities=13% Similarity=0.100 Sum_probs=58.7
Q ss_pred cEEEEEEecCCCchHHHHHHhhc-----Ccccc-ccccchHHH--HHHHHHHhCCCCC---CC-ccCC-------CCHHH
Q 040913 190 LSVVAILDSSGFDKTAFAADTYN-----NNHVK-FYFDCLAWI--LDDIIRSLMPPSR---VT-VIIG-------EDYKL 250 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~-----~~~~~-~~F~~~~wv--~~~il~~l~~~~~---~~-~~~~-------~~~~~ 250 (425)
...|-|++..|.||||+|-...- ..+|. -.|....|- -.+++..+..... .. .... .....
T Consensus 28 ~g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~~ 107 (196)
T 1g5t_A 28 RGIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAACMA 107 (196)
T ss_dssp CCCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHHHH
Confidence 35667777788999998854432 12221 123222122 3445555520000 00 0000 11123
Q ss_pred HHHHHHHHhcCCeE-EEEecccCC----ChhhHHHHHhhCCCCCCCcEEEEecCChh
Q 040913 251 KKSILRDFLTNKKY-FIALDDVCH----NIEIWDDLEEVLPDNQNGSRVLITVINPS 302 (425)
Q Consensus 251 l~~~l~~~l~~kr~-LlVLDdvw~----~~~~~~~l~~~l~~~~~gskIivTTR~~~ 302 (425)
......+.+.+.+| |||||++-. .--..+.+...+.......-||+|+|+..
T Consensus 108 ~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~ap 164 (196)
T 1g5t_A 108 VWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGCH 164 (196)
T ss_dssp HHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSCC
T ss_pred HHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCCc
Confidence 34445555655555 999999841 11344555556655555778999999953
No 173
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=94.26 E-value=0.011 Score=52.08 Aligned_cols=21 Identities=19% Similarity=0.254 Sum_probs=19.2
Q ss_pred EEEEEecCCCchHHHHHHhhc
Q 040913 192 VVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 192 vi~IvG~gGvGKTtLa~~v~~ 212 (425)
+|+|.|..|+||||+++.+..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 689999999999999998865
No 174
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=94.25 E-value=0.025 Score=49.52 Aligned_cols=24 Identities=17% Similarity=0.134 Sum_probs=21.9
Q ss_pred CcEEEEEEecCCCchHHHHHHhhc
Q 040913 189 GLSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 189 ~~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
...+|+|.|+.|+||||+++.+..
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999999999876
No 175
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=94.25 E-value=0.026 Score=50.16 Aligned_cols=24 Identities=17% Similarity=0.160 Sum_probs=21.3
Q ss_pred CcEEEEEEecCCCchHHHHHHhhc
Q 040913 189 GLSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 189 ~~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
.-.+++|+|+.|+|||||++.+..
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g 47 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAV 47 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 357999999999999999999864
No 176
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=94.24 E-value=0.027 Score=50.30 Aligned_cols=26 Identities=15% Similarity=0.173 Sum_probs=23.1
Q ss_pred CCcEEEEEEecCCCchHHHHHHhhcC
Q 040913 188 IGLSVVAILDSSGFDKTAFAADTYNN 213 (425)
Q Consensus 188 ~~~~vi~IvG~gGvGKTtLa~~v~~~ 213 (425)
...+||.|.|++|+||||.|+.+.+.
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~ 52 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQK 52 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 35789999999999999999998873
No 177
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=94.21 E-value=0.023 Score=49.87 Aligned_cols=23 Identities=4% Similarity=-0.143 Sum_probs=20.8
Q ss_pred cEEEEEEecCCCchHHHHHHhhc
Q 040913 190 LSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
..+|.|.|+.|+||||+++.+.+
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 46899999999999999999876
No 178
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=94.20 E-value=0.012 Score=57.14 Aligned_cols=34 Identities=15% Similarity=-0.037 Sum_probs=25.4
Q ss_pred HHHHHHhcCCCCcEEEEEEecCCCchHHHHHHhhc
Q 040913 178 EWFDLLIEGPIGLSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 178 ~l~~~L~~~~~~~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
++++.+..-. .-..++|+|.+|+|||||++.+.+
T Consensus 163 raID~~~pi~-rGQr~~IvG~sG~GKTtLl~~Iar 196 (422)
T 3ice_A 163 RVLDLASPIG-RGQRGLIVAPPKAGKTMLLQNIAQ 196 (422)
T ss_dssp HHHHHHSCCB-TTCEEEEECCSSSSHHHHHHHHHH
T ss_pred eeeeeeeeec-CCcEEEEecCCCCChhHHHHHHHH
Confidence 4556555432 234789999999999999998876
No 179
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=94.18 E-value=0.03 Score=55.47 Aligned_cols=46 Identities=15% Similarity=0.096 Sum_probs=34.9
Q ss_pred CCcccchhhHHHHHHHHhcC------------CCCcEEEEEEecCCCchHHHHHHhhc
Q 040913 167 LDISEFERAREEWFDLLIEG------------PIGLSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 167 ~~~vGr~~~~~~l~~~L~~~------------~~~~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
..++|.+..++.|...+... +...+-|.++|++|+||||+|+.+..
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~ 72 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAK 72 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHH
Confidence 45889998888887666321 11245588999999999999999876
No 180
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=94.18 E-value=0.026 Score=53.18 Aligned_cols=24 Identities=25% Similarity=0.180 Sum_probs=20.9
Q ss_pred CcEEEEEEecCCCchHHHHHHhhc
Q 040913 189 GLSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 189 ~~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
...+++|+|++|+|||||+..+..
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lag 124 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGR 124 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH
Confidence 357999999999999999988763
No 181
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=94.16 E-value=0.029 Score=49.66 Aligned_cols=23 Identities=22% Similarity=0.203 Sum_probs=20.7
Q ss_pred cEEEEEEecCCCchHHHHHHhhc
Q 040913 190 LSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
..+|+|.|+.|+||||+++.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999865
No 182
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=94.14 E-value=0.045 Score=48.46 Aligned_cols=22 Identities=27% Similarity=0.203 Sum_probs=19.8
Q ss_pred EEEEEEecCCCchHHHHHHhhc
Q 040913 191 SVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 191 ~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
.+++|+|+.|+|||||.+.+..
T Consensus 23 e~~~liG~nGsGKSTLl~~l~G 44 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAV 44 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4799999999999999998874
No 183
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=94.13 E-value=0.052 Score=51.49 Aligned_cols=24 Identities=25% Similarity=0.303 Sum_probs=21.0
Q ss_pred CcEEEEEEecCCCchHHHHHHhhc
Q 040913 189 GLSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 189 ~~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
...+|+|+|.+|+||||++..+..
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~ 127 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMAN 127 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999999887754
No 184
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=94.13 E-value=0.025 Score=51.13 Aligned_cols=23 Identities=22% Similarity=0.133 Sum_probs=20.5
Q ss_pred cEEEEEEecCCCchHHHHHHhhc
Q 040913 190 LSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
-.+++|+|+.|+|||||.+.+..
T Consensus 31 Ge~~~iiG~nGsGKSTLl~~l~G 53 (235)
T 3tif_A 31 GEFVSIMGPSGSGKSTMLNIIGC 53 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCcHHHHHHHHhc
Confidence 45899999999999999998864
No 185
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=94.12 E-value=0.026 Score=50.58 Aligned_cols=23 Identities=22% Similarity=0.094 Sum_probs=20.4
Q ss_pred cEEEEEEecCCCchHHHHHHhhc
Q 040913 190 LSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
-.+++|+|+.|+|||||.+.+..
T Consensus 30 Ge~~~iiG~nGsGKSTLl~~l~G 52 (224)
T 2pcj_A 30 GEFVSIIGASGSGKSTLLYILGL 52 (224)
T ss_dssp TCEEEEEECTTSCHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 35899999999999999998874
No 186
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=94.11 E-value=0.025 Score=50.95 Aligned_cols=22 Identities=32% Similarity=0.356 Sum_probs=20.0
Q ss_pred cEEEEEEecCCCchHHHHHHhh
Q 040913 190 LSVVAILDSSGFDKTAFAADTY 211 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~ 211 (425)
-.+++|+|+.|+|||||++.+.
T Consensus 30 G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 30 GTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHH
Confidence 4689999999999999999876
No 187
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=94.11 E-value=0.03 Score=52.07 Aligned_cols=24 Identities=33% Similarity=0.397 Sum_probs=21.4
Q ss_pred CcEEEEEEecCCCchHHHHHHhhc
Q 040913 189 GLSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 189 ~~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
...+|+|.|+.|+||||+|+.+..
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 367899999999999999998873
No 188
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=94.10 E-value=0.026 Score=50.46 Aligned_cols=24 Identities=13% Similarity=0.137 Sum_probs=21.2
Q ss_pred CcEEEEEEecCCCchHHHHHHhhc
Q 040913 189 GLSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 189 ~~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
.-.+++|+|+.|+|||||.+.+..
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g 38 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLK 38 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHhc
Confidence 356899999999999999998875
No 189
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=94.09 E-value=0.034 Score=53.82 Aligned_cols=81 Identities=15% Similarity=0.058 Sum_probs=45.4
Q ss_pred cEEEEEEecCCCchHHHHHHhhcCccccccccchHHH------HHHHHHHhCCCCCCC-ccCCCCHHHHHHHHHHHhcC-
Q 040913 190 LSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWI------LDDIIRSLMPPSRVT-VIIGEDYKLKKSILRDFLTN- 261 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~~~~~~~~F~~~~wv------~~~il~~l~~~~~~~-~~~~~~~~~l~~~l~~~l~~- 261 (425)
-.++.|.|.+|+||||||.++........ ..++|+ -......+......- -....+.+++...+...++.
T Consensus 74 G~li~I~G~pGsGKTtlal~la~~~~~~g--~~vlyi~~E~s~~~~~a~~~g~d~~~l~i~~~~~~e~~l~~l~~l~~~~ 151 (366)
T 1xp8_A 74 GRITEIYGPESGGKTTLALAIVAQAQKAG--GTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQALEIMELLVRSG 151 (366)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHTT--CCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHTTT
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHHHHCC--CeEEEEECCCChhHHHHHHcCCCHHHceeecCCcHHHHHHHHHHHHhcC
Confidence 45788899999999999988765211110 122233 111233333321100 01223567777777766653
Q ss_pred CeEEEEecccC
Q 040913 262 KKYFIALDDVC 272 (425)
Q Consensus 262 kr~LlVLDdvw 272 (425)
+--+||+|.+-
T Consensus 152 ~~~lVVIDsl~ 162 (366)
T 1xp8_A 152 AIDVVVVDSVA 162 (366)
T ss_dssp CCSEEEEECTT
T ss_pred CCCEEEEeChH
Confidence 45599999984
No 190
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=94.06 E-value=0.025 Score=50.58 Aligned_cols=23 Identities=17% Similarity=0.221 Sum_probs=20.8
Q ss_pred cEEEEEEecCCCchHHHHHHhhc
Q 040913 190 LSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
...|.|.|+.|+||||+|+.+..
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999999876
No 191
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=94.05 E-value=0.015 Score=49.92 Aligned_cols=22 Identities=18% Similarity=0.259 Sum_probs=20.1
Q ss_pred EEEEEEecCCCchHHHHHHhhc
Q 040913 191 SVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 191 ~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
.+++|+|..|+|||||++.+..
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~ 24 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMP 24 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998876
No 192
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=94.03 E-value=0.026 Score=48.83 Aligned_cols=21 Identities=10% Similarity=-0.004 Sum_probs=19.4
Q ss_pred EEEEEecCCCchHHHHHHhhc
Q 040913 192 VVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 192 vi~IvG~gGvGKTtLa~~v~~ 212 (425)
.|+|.|+.|+||||+++.+.+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999877
No 193
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=94.02 E-value=0.029 Score=47.98 Aligned_cols=23 Identities=22% Similarity=0.075 Sum_probs=20.8
Q ss_pred cEEEEEEecCCCchHHHHHHhhc
Q 040913 190 LSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
..+|.|.|+.|+||||+++.+..
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46889999999999999999876
No 194
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=94.00 E-value=0.032 Score=49.27 Aligned_cols=23 Identities=13% Similarity=0.034 Sum_probs=21.0
Q ss_pred cEEEEEEecCCCchHHHHHHhhc
Q 040913 190 LSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
..+|.|.|+.|+||||+++.+..
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 57899999999999999999876
No 195
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=93.97 E-value=0.032 Score=52.46 Aligned_cols=23 Identities=22% Similarity=0.189 Sum_probs=20.6
Q ss_pred cEEEEEEecCCCchHHHHHHhhc
Q 040913 190 LSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
..+++|+|+.|+||||+++.+..
T Consensus 100 g~vi~lvG~nGsGKTTll~~Lag 122 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSLGKLAH 122 (302)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 57999999999999999988764
No 196
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=93.97 E-value=0.023 Score=49.51 Aligned_cols=21 Identities=19% Similarity=0.241 Sum_probs=19.2
Q ss_pred EEEEEecCCCchHHHHHHhhc
Q 040913 192 VVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 192 vi~IvG~gGvGKTtLa~~v~~ 212 (425)
+++|+|+.|+|||||++.+..
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g 23 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASE 23 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHh
Confidence 689999999999999998876
No 197
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=93.92 E-value=0.028 Score=49.97 Aligned_cols=23 Identities=13% Similarity=0.141 Sum_probs=20.6
Q ss_pred cEEEEEEecCCCchHHHHHHhhc
Q 040913 190 LSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
...|.|.|+.|+||||+|+.+.+
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999999877
No 198
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=93.90 E-value=0.029 Score=50.91 Aligned_cols=22 Identities=18% Similarity=0.258 Sum_probs=20.1
Q ss_pred EEEEEEecCCCchHHHHHHhhc
Q 040913 191 SVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 191 ~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
.+++|+|+.|+|||||.+.+..
T Consensus 25 e~~~liG~nGsGKSTLl~~l~G 46 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAG 46 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHhC
Confidence 6899999999999999998864
No 199
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=93.86 E-value=0.026 Score=50.25 Aligned_cols=23 Identities=13% Similarity=-0.109 Sum_probs=20.6
Q ss_pred cEEEEEEecCCCchHHHHHHhhc
Q 040913 190 LSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
...|.|.|+.|+||||+++.+.+
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45688999999999999999887
No 200
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=93.84 E-value=0.03 Score=49.47 Aligned_cols=21 Identities=14% Similarity=0.199 Sum_probs=18.9
Q ss_pred EEEEEecCCCchHHHHHHhhc
Q 040913 192 VVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 192 vi~IvG~gGvGKTtLa~~v~~ 212 (425)
.|.|.|+.|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999866
No 201
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=93.83 E-value=0.031 Score=50.58 Aligned_cols=23 Identities=17% Similarity=0.294 Sum_probs=20.8
Q ss_pred cEEEEEEecCCCchHHHHHHhhc
Q 040913 190 LSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
-.+++|+|+.|+|||||.+.+..
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~G 53 (237)
T 2cbz_A 31 GALVAVVGQVGCGKSSLLSALLA 53 (237)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 45899999999999999999875
No 202
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=93.81 E-value=0.021 Score=51.24 Aligned_cols=22 Identities=23% Similarity=0.259 Sum_probs=16.3
Q ss_pred cEEEEEEecCCCchHHHHHHhh
Q 040913 190 LSVVAILDSSGFDKTAFAADTY 211 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~ 211 (425)
-.+++|+|+.|+|||||++.+.
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~ 48 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLL 48 (231)
T ss_dssp CCEEEEECSCC----CHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 4689999999999999999988
No 203
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=93.79 E-value=0.058 Score=54.05 Aligned_cols=24 Identities=17% Similarity=0.181 Sum_probs=21.3
Q ss_pred CcEEEEEEecCCCchHHHHHHhhc
Q 040913 189 GLSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 189 ~~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
...+++|+|..|+|||||++.+..
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAg 315 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLAR 315 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCcccHHHHHHHHHH
Confidence 467999999999999999988765
No 204
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=93.79 E-value=0.031 Score=48.73 Aligned_cols=24 Identities=8% Similarity=0.021 Sum_probs=21.2
Q ss_pred cEEEEEEecCCCchHHHHHHhhcC
Q 040913 190 LSVVAILDSSGFDKTAFAADTYNN 213 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~~ 213 (425)
...|.|.|+.|+||||+++.+.+.
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHH
Confidence 357999999999999999998873
No 205
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=93.78 E-value=0.035 Score=52.55 Aligned_cols=22 Identities=23% Similarity=0.441 Sum_probs=19.2
Q ss_pred CcEEEEEEecCCCchHHHHHHh
Q 040913 189 GLSVVAILDSSGFDKTAFAADT 210 (425)
Q Consensus 189 ~~~vi~IvG~gGvGKTtLa~~v 210 (425)
+.+||+|.|=|||||||.+-.+
T Consensus 47 ~aKVIAIaGKGGVGKTTtavNL 68 (314)
T 3fwy_A 47 GAKVFAVYGKGGIGKSTTSSNL 68 (314)
T ss_dssp CCEEEEEECSTTSSHHHHHHHH
T ss_pred CceEEEEECCCccCHHHHHHHH
Confidence 5899999999999999987554
No 206
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=93.77 E-value=0.032 Score=51.35 Aligned_cols=23 Identities=30% Similarity=0.307 Sum_probs=20.5
Q ss_pred cEEEEEEecCCCchHHHHHHhhc
Q 040913 190 LSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
-.+++|+|+.|+|||||.+.+..
T Consensus 32 Ge~~~liG~nGsGKSTLlk~l~G 54 (262)
T 1b0u_A 32 GDVISIIGSSGSGKSTFLRCINF 54 (262)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 45899999999999999999864
No 207
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=93.77 E-value=0.032 Score=51.76 Aligned_cols=23 Identities=26% Similarity=0.315 Sum_probs=20.3
Q ss_pred cEEEEEEecCCCchHHHHHHhhc
Q 040913 190 LSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
-.+++|+|+.|+|||||.+.+..
T Consensus 34 Ge~~~iiGpnGsGKSTLl~~l~G 56 (275)
T 3gfo_A 34 GEVTAILGGNGVGKSTLFQNFNG 56 (275)
T ss_dssp TSEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHHc
Confidence 35899999999999999998863
No 208
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=93.73 E-value=0.032 Score=48.73 Aligned_cols=21 Identities=24% Similarity=0.200 Sum_probs=19.8
Q ss_pred EEEEEecCCCchHHHHHHhhc
Q 040913 192 VVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 192 vi~IvG~gGvGKTtLa~~v~~ 212 (425)
+|+|.|+.|+||||+++.+..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 899999999999999999876
No 209
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=93.68 E-value=0.032 Score=47.92 Aligned_cols=23 Identities=22% Similarity=0.239 Sum_probs=20.9
Q ss_pred cEEEEEEecCCCchHHHHHHhhc
Q 040913 190 LSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
.+++.|+|..|+|||||+..+..
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~ 28 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIP 28 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHH
Confidence 57899999999999999988876
No 210
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=93.68 E-value=0.034 Score=50.39 Aligned_cols=23 Identities=17% Similarity=0.238 Sum_probs=20.5
Q ss_pred cEEEEEEecCCCchHHHHHHhhc
Q 040913 190 LSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
-.+++|+|+.|+|||||.+.+..
T Consensus 32 Ge~~~l~G~nGsGKSTLl~~l~G 54 (240)
T 1ji0_A 32 GQIVTLIGANGAGKTTTLSAIAG 54 (240)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 45899999999999999999874
No 211
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=93.67 E-value=0.033 Score=49.19 Aligned_cols=21 Identities=10% Similarity=0.123 Sum_probs=18.9
Q ss_pred EEEEEecCCCchHHHHHHhhc
Q 040913 192 VVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 192 vi~IvG~gGvGKTtLa~~v~~ 212 (425)
.|.|.|++|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999876
No 212
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=93.66 E-value=0.13 Score=53.03 Aligned_cols=23 Identities=26% Similarity=0.186 Sum_probs=20.6
Q ss_pred cEEEEEEecCCCchHHHHHHhhc
Q 040913 190 LSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
-.+++|+|+.|.|||||++.+..
T Consensus 369 G~~~~ivG~sGsGKSTll~~l~g 391 (582)
T 3b5x_A 369 GKTVALVGRSGSGKSTIANLFTR 391 (582)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 46899999999999999999864
No 213
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=93.65 E-value=0.034 Score=50.93 Aligned_cols=23 Identities=17% Similarity=0.170 Sum_probs=20.5
Q ss_pred cEEEEEEecCCCchHHHHHHhhc
Q 040913 190 LSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
-.+++|+|+.|+|||||.+.+..
T Consensus 33 Ge~~~liG~nGsGKSTLlk~l~G 55 (257)
T 1g6h_A 33 GDVTLIIGPNGSGKSTLINVITG 55 (257)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 45899999999999999999864
No 214
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=93.63 E-value=0.035 Score=52.05 Aligned_cols=24 Identities=21% Similarity=0.192 Sum_probs=20.6
Q ss_pred CcEEEEEEecCCCchHHHHHHhhc
Q 040913 189 GLSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 189 ~~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
...+++++|.+|+||||++..+..
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~ 127 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAA 127 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 356999999999999999887754
No 215
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=93.62 E-value=0.038 Score=50.16 Aligned_cols=23 Identities=22% Similarity=0.135 Sum_probs=20.7
Q ss_pred cEEEEEEecCCCchHHHHHHhhc
Q 040913 190 LSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
-.+++|+|+.|+|||||.+.+..
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~G 50 (243)
T 1mv5_A 28 NSIIAFAGPSGGGKSTIFSLLER 50 (243)
T ss_dssp TEEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 56899999999999999999864
No 216
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=93.61 E-value=0.035 Score=51.19 Aligned_cols=23 Identities=22% Similarity=0.212 Sum_probs=20.6
Q ss_pred cEEEEEEecCCCchHHHHHHhhc
Q 040913 190 LSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
-.+++|+|+.|.|||||.+.+..
T Consensus 37 Ge~~~liG~nGsGKSTLl~~l~G 59 (266)
T 4g1u_C 37 GEMVAIIGPNGAGKSTLLRLLTG 59 (266)
T ss_dssp TCEEEEECCTTSCHHHHHHHHTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhc
Confidence 46899999999999999999874
No 217
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=93.55 E-value=0.037 Score=49.75 Aligned_cols=23 Identities=22% Similarity=0.225 Sum_probs=20.7
Q ss_pred cEEEEEEecCCCchHHHHHHhhc
Q 040913 190 LSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
-.+++|+|+.|.|||||.+.+..
T Consensus 34 Ge~~~i~G~nGsGKSTLl~~l~G 56 (229)
T 2pze_A 34 GQLLAVAGSTGAGKTSLLMMIMG 56 (229)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 45899999999999999999875
No 218
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=93.55 E-value=0.037 Score=50.97 Aligned_cols=23 Identities=26% Similarity=0.245 Sum_probs=20.6
Q ss_pred cEEEEEEecCCCchHHHHHHhhc
Q 040913 190 LSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
-.+++|+|+.|+|||||.+.+..
T Consensus 50 Gei~~liG~NGsGKSTLlk~l~G 72 (263)
T 2olj_A 50 GEVVVVIGPSGSGKSTFLRCLNL 72 (263)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEEcCCCCcHHHHHHHHHc
Confidence 46899999999999999998874
No 219
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=93.54 E-value=0.037 Score=50.48 Aligned_cols=23 Identities=17% Similarity=0.169 Sum_probs=20.8
Q ss_pred cEEEEEEecCCCchHHHHHHhhc
Q 040913 190 LSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
-.+++|+|+.|+|||||.+.+..
T Consensus 29 Ge~~~l~G~nGsGKSTLlk~l~G 51 (250)
T 2d2e_A 29 GEVHALMGPNGAGKSTLGKILAG 51 (250)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 35899999999999999999876
No 220
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=93.52 E-value=0.038 Score=50.37 Aligned_cols=23 Identities=22% Similarity=0.235 Sum_probs=20.5
Q ss_pred cEEEEEEecCCCchHHHHHHhhc
Q 040913 190 LSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
-.+++|+|+.|+|||||.+.+..
T Consensus 35 Ge~~~i~G~nGsGKSTLl~~l~G 57 (247)
T 2ff7_A 35 GEVIGIVGRSGSGKSTLTKLIQR 57 (247)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 35899999999999999999865
No 221
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=93.51 E-value=0.032 Score=49.71 Aligned_cols=23 Identities=22% Similarity=0.232 Sum_probs=20.3
Q ss_pred cEEEEEEecCCCchHHHHHHhhc
Q 040913 190 LSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
-.+++|+|+.|+|||||.+.+..
T Consensus 35 Ge~~~iiG~NGsGKSTLlk~l~G 57 (214)
T 1sgw_A 35 GNVVNFHGPNGIGKTTLLKTIST 57 (214)
T ss_dssp TCCEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 35789999999999999999865
No 222
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=93.49 E-value=0.028 Score=51.36 Aligned_cols=23 Identities=13% Similarity=-0.000 Sum_probs=20.6
Q ss_pred cEEEEEEecCCCchHHHHHHhhc
Q 040913 190 LSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
-.+|.|+|+.|+||||+++.+..
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 34799999999999999999977
No 223
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=93.49 E-value=0.12 Score=49.37 Aligned_cols=25 Identities=8% Similarity=0.057 Sum_probs=21.6
Q ss_pred CCcEEEEEEecCCCchHHHHHHhhc
Q 040913 188 IGLSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 188 ~~~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
..-.++.|+|.+|+||||||.++..
T Consensus 120 ~~G~i~~I~G~~GsGKTtla~~la~ 144 (343)
T 1v5w_A 120 ESMAITEAFGEFRTGKTQLSHTLCV 144 (343)
T ss_dssp CSSEEEEEECCTTCTHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3467899999999999999988765
No 224
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=93.43 E-value=0.04 Score=50.53 Aligned_cols=23 Identities=13% Similarity=0.109 Sum_probs=20.6
Q ss_pred cEEEEEEecCCCchHHHHHHhhc
Q 040913 190 LSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
-.+++|+|+.|+|||||.+.+..
T Consensus 41 Gei~~l~G~NGsGKSTLlk~l~G 63 (256)
T 1vpl_A 41 GEIFGLIGPNGAGKTTTLRIIST 63 (256)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT
T ss_pred CcEEEEECCCCCCHHHHHHHHhc
Confidence 45899999999999999999874
No 225
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=93.42 E-value=0.045 Score=52.73 Aligned_cols=24 Identities=21% Similarity=0.166 Sum_probs=21.1
Q ss_pred CcEEEEEEecCCCchHHHHHHhhc
Q 040913 189 GLSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 189 ~~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
...+++|+|..|+|||||+..+..
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag 179 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAH 179 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHh
Confidence 367999999999999999988764
No 226
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=93.41 E-value=0.062 Score=45.89 Aligned_cols=26 Identities=12% Similarity=0.012 Sum_probs=22.2
Q ss_pred CCcEEEEEEecCCCchHHHHHHhhcC
Q 040913 188 IGLSVVAILDSSGFDKTAFAADTYNN 213 (425)
Q Consensus 188 ~~~~vi~IvG~gGvGKTtLa~~v~~~ 213 (425)
....-|.|+|.+|+|||||...+.+.
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcC
Confidence 34567889999999999999998874
No 227
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=93.39 E-value=0.041 Score=52.52 Aligned_cols=22 Identities=14% Similarity=0.261 Sum_probs=20.2
Q ss_pred EEEEEEecCCCchHHHHHHhhc
Q 040913 191 SVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 191 ~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
.+|+|.|+.|+||||||..+..
T Consensus 8 ~lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHH
Confidence 5899999999999999998876
No 228
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=93.39 E-value=0.059 Score=53.62 Aligned_cols=34 Identities=21% Similarity=0.235 Sum_probs=24.1
Q ss_pred HHHHHhcCCCCcEEEEEEecCCCchHHHHHHhhcC
Q 040913 179 WFDLLIEGPIGLSVVAILDSSGFDKTAFAADTYNN 213 (425)
Q Consensus 179 l~~~L~~~~~~~~vi~IvG~gGvGKTtLa~~v~~~ 213 (425)
.++.|..--. -..++|+|.+|+|||||++.+..+
T Consensus 141 ~ID~L~pi~k-Gq~~~i~G~sGvGKTtL~~~l~~~ 174 (473)
T 1sky_E 141 VVDLLAPYIK-GGKIGLFGGAGVGKTVLIQELIHN 174 (473)
T ss_dssp HHHHHSCEET-TCEEEEECCSSSCHHHHHHHHHHH
T ss_pred HHHHHhhhcc-CCEEEEECCCCCCccHHHHHHHhh
Confidence 4555543211 235789999999999999988763
No 229
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=93.39 E-value=0.041 Score=50.57 Aligned_cols=23 Identities=22% Similarity=0.299 Sum_probs=20.7
Q ss_pred cEEEEEEecCCCchHHHHHHhhc
Q 040913 190 LSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
-.+++|+|+.|+|||||.+.+..
T Consensus 46 Ge~~~i~G~nGsGKSTLl~~l~G 68 (260)
T 2ghi_A 46 GTTCALVGHTGSGKSTIAKLLYR 68 (260)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 45899999999999999999875
No 230
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=93.38 E-value=0.042 Score=47.54 Aligned_cols=24 Identities=25% Similarity=0.338 Sum_probs=21.2
Q ss_pred cEEEEEEecCCCchHHHHHHhhcC
Q 040913 190 LSVVAILDSSGFDKTAFAADTYNN 213 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~~ 213 (425)
...|+|+|..|+|||||.+.+...
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 567899999999999999998764
No 231
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=93.38 E-value=0.047 Score=51.40 Aligned_cols=24 Identities=17% Similarity=0.152 Sum_probs=21.1
Q ss_pred CcEEEEEEecCCCchHHHHHHhhc
Q 040913 189 GLSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 189 ~~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
...+|.|+|.+|+||||++..+..
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~ 126 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAK 126 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHH
Confidence 468999999999999999988764
No 232
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=93.37 E-value=0.041 Score=50.77 Aligned_cols=23 Identities=26% Similarity=0.283 Sum_probs=20.8
Q ss_pred cEEEEEEecCCCchHHHHHHhhc
Q 040913 190 LSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
-.+++|+|+.|+|||||.+.+..
T Consensus 46 Ge~~~l~G~NGsGKSTLlk~l~G 68 (267)
T 2zu0_C 46 GEVHAIMGPNGSGKSTLSATLAG 68 (267)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 45899999999999999998876
No 233
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=93.37 E-value=0.041 Score=50.90 Aligned_cols=23 Identities=30% Similarity=0.268 Sum_probs=20.7
Q ss_pred cEEEEEEecCCCchHHHHHHhhc
Q 040913 190 LSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
-.+++|+|+.|+|||||.+.+..
T Consensus 45 Ge~~~i~G~nGsGKSTLlk~l~G 67 (271)
T 2ixe_A 45 GKVTALVGPNGSGKSTVAALLQN 67 (271)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 46899999999999999999875
No 234
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=93.34 E-value=0.059 Score=45.20 Aligned_cols=23 Identities=9% Similarity=0.159 Sum_probs=20.4
Q ss_pred EEEEEEecCCCchHHHHHHhhcC
Q 040913 191 SVVAILDSSGFDKTAFAADTYNN 213 (425)
Q Consensus 191 ~vi~IvG~gGvGKTtLa~~v~~~ 213 (425)
..|+|+|.+|+|||||...+.+.
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 56899999999999999998764
No 235
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=93.28 E-value=0.043 Score=50.58 Aligned_cols=23 Identities=9% Similarity=0.075 Sum_probs=20.4
Q ss_pred cEEEEEEecCCCchHHHHHHhhc
Q 040913 190 LSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
-.+++|+|+.|+|||||.+.+..
T Consensus 33 Ge~~~liG~nGsGKSTLl~~i~G 55 (266)
T 2yz2_A 33 GECLLVAGNTGSGKSTLLQIVAG 55 (266)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCcHHHHHHHHhC
Confidence 45899999999999999999864
No 236
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=93.28 E-value=0.043 Score=50.04 Aligned_cols=23 Identities=13% Similarity=0.235 Sum_probs=20.4
Q ss_pred cEEEEEEecCCCchHHHHHHhhc
Q 040913 190 LSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
-.+++|+|+.|+|||||.+.+..
T Consensus 26 Ge~~~liG~NGsGKSTLlk~l~G 48 (249)
T 2qi9_C 26 GEILHLVGPNGAGKSTLLARMAG 48 (249)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCcHHHHHHHHhC
Confidence 35899999999999999999875
No 237
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=93.28 E-value=0.047 Score=48.92 Aligned_cols=25 Identities=20% Similarity=0.072 Sum_probs=22.2
Q ss_pred CcEEEEEEecCCCchHHHHHHhhcC
Q 040913 189 GLSVVAILDSSGFDKTAFAADTYNN 213 (425)
Q Consensus 189 ~~~vi~IvG~gGvGKTtLa~~v~~~ 213 (425)
...+|+|.|+.|+|||||++.+...
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhc
Confidence 4579999999999999999998873
No 238
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=93.27 E-value=0.042 Score=47.08 Aligned_cols=22 Identities=18% Similarity=0.292 Sum_probs=19.5
Q ss_pred EEEEEecCCCchHHHHHHhhcC
Q 040913 192 VVAILDSSGFDKTAFAADTYNN 213 (425)
Q Consensus 192 vi~IvG~gGvGKTtLa~~v~~~ 213 (425)
-|.|+|.+|+|||||...+...
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999998873
No 239
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=93.25 E-value=0.045 Score=48.20 Aligned_cols=24 Identities=17% Similarity=0.003 Sum_probs=20.9
Q ss_pred CcEEEEEEecCCCchHHHHHHhhc
Q 040913 189 GLSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 189 ~~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
.-.++.|+|.+|+|||||+..+..
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999998865
No 240
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=93.24 E-value=0.044 Score=49.43 Aligned_cols=23 Identities=22% Similarity=0.198 Sum_probs=20.9
Q ss_pred cEEEEEEecCCCchHHHHHHhhc
Q 040913 190 LSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
..+|.|.|++|+||||+++.+..
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999876
No 241
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=93.24 E-value=0.077 Score=52.50 Aligned_cols=37 Identities=22% Similarity=0.123 Sum_probs=26.7
Q ss_pred HHHHHHHHhcC-------CCCcEEEEEEecCCCchHHHHHHhhc
Q 040913 176 REEWFDLLIEG-------PIGLSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 176 ~~~l~~~L~~~-------~~~~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
.+++.++|... ....++|.++|.+|+||||++..+..
T Consensus 79 ~~~l~~~l~~~~~~~~~~~~~~~vI~ivG~~GvGKTT~a~~LA~ 122 (433)
T 2xxa_A 79 RNELVAAMGEENQTLNLAAQPPAVVLMAGLQGAGKTTSVGKLGK 122 (433)
T ss_dssp HHHHHHHHCSSSCCCCCCSSSSEEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHHHhccccccccccCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 44555555432 13478999999999999999877763
No 242
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=93.19 E-value=0.045 Score=50.07 Aligned_cols=23 Identities=17% Similarity=0.270 Sum_probs=20.5
Q ss_pred cEEEEEEecCCCchHHHHHHhhc
Q 040913 190 LSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
-.+++|+|+.|+|||||.+.+..
T Consensus 31 Ge~~~l~G~nGsGKSTLl~~l~G 53 (253)
T 2nq2_C 31 GDILAVLGQNGCGKSTLLDLLLG 53 (253)
T ss_dssp TCEEEEECCSSSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 35899999999999999999875
No 243
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=93.18 E-value=0.047 Score=50.20 Aligned_cols=110 Identities=15% Similarity=0.166 Sum_probs=56.7
Q ss_pred CcEEEEEEecCCCchHHHHHHhhcCccccccccchHHHH-HHHHHHhCCCCCC---CccCCCCHHHHHHHHHHHhcCCeE
Q 040913 189 GLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWIL-DDIIRSLMPPSRV---TVIIGEDYKLKKSILRDFLTNKKY 264 (425)
Q Consensus 189 ~~~vi~IvG~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~-~~il~~l~~~~~~---~~~~~~~~~~l~~~l~~~l~~kr~ 264 (425)
.-.+++|+|+.|+|||||.+.+..-.. ..+...+.+. ..+ ..+...... +.....+...+...+...|..+.=
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~g~~~--~~~~G~I~~~g~~i-~~~~~~~~~~v~q~~~gl~~~~l~~~la~aL~~~p~ 100 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMIDYIN--QTKSYHIITIEDPI-EYVFKHKKSIVNQREVGEDTKSFADALRAALREDPD 100 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHHHHHH--HHCCCEEEEEESSC-CSCCCCSSSEEEEEEBTTTBSCHHHHHHHHHHHCCS
T ss_pred CCCEEEEECCCCccHHHHHHHHHHhCC--CCCCCEEEEcCCcc-eeecCCcceeeeHHHhCCCHHHHHHHHHHHHhhCCC
Confidence 357899999999999999988765211 0000111000 000 000000000 000000112335566777766777
Q ss_pred EEEecccCCChhhHHHHHhhCCCCCCCcEEEEecCChhHHH
Q 040913 265 FIALDDVCHNIEIWDDLEEVLPDNQNGSRVLITVINPSLLT 305 (425)
Q Consensus 265 LlVLDdvw~~~~~~~~l~~~l~~~~~gskIivTTR~~~va~ 305 (425)
+|++|... +.+....+.... ..|.-|++||.+.++..
T Consensus 101 illlDEp~-D~~~~~~~l~~~---~~g~~vl~t~H~~~~~~ 137 (261)
T 2eyu_A 101 VIFVGEMR-DLETVETALRAA---ETGHLVFGTLHTNTAID 137 (261)
T ss_dssp EEEESCCC-SHHHHHHHHHHH---HTTCEEEEEECCSSHHH
T ss_pred EEEeCCCC-CHHHHHHHHHHH---ccCCEEEEEeCcchHHH
Confidence 89999997 554443332222 23667888888876543
No 244
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=93.18 E-value=0.045 Score=50.82 Aligned_cols=23 Identities=13% Similarity=-0.039 Sum_probs=20.5
Q ss_pred cEEEEEEecCCCchHHHHHHhhc
Q 040913 190 LSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
-.+++|+|+.|+|||||.+.+..
T Consensus 47 Ge~~~liG~NGsGKSTLlk~l~G 69 (279)
T 2ihy_A 47 GDKWILYGLNGAGKTTLLNILNA 69 (279)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCcHHHHHHHHhC
Confidence 45899999999999999999874
No 245
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=93.13 E-value=0.047 Score=48.21 Aligned_cols=21 Identities=14% Similarity=0.020 Sum_probs=19.0
Q ss_pred EEEEEecCCCchHHHHHHhhc
Q 040913 192 VVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 192 vi~IvG~gGvGKTtLa~~v~~ 212 (425)
.|.|.|+.|+||||+|+.+.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 378999999999999999876
No 246
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=93.13 E-value=0.098 Score=55.63 Aligned_cols=46 Identities=11% Similarity=0.085 Sum_probs=36.4
Q ss_pred CCcccchhhHHHHHHHHhcC-------CCCcEEEEEEecCCCchHHHHHHhhc
Q 040913 167 LDISEFERAREEWFDLLIEG-------PIGLSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 167 ~~~vGr~~~~~~l~~~L~~~-------~~~~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
..++|.+..++.+...+... ......+.++|++|+|||++|+.+.+
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~ 510 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSK 510 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHH
Confidence 45889999888887776532 12345788999999999999999887
No 247
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=93.13 E-value=0.051 Score=55.48 Aligned_cols=46 Identities=15% Similarity=0.270 Sum_probs=34.6
Q ss_pred CCcccchhhHHHHHHHHhc----CCCCcEEEEEEecCCCchHHHHHHhhc
Q 040913 167 LDISEFERAREEWFDLLIE----GPIGLSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 167 ~~~vGr~~~~~~l~~~L~~----~~~~~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
.+++|.++.+..+.+.+.- ......++.++|++|+||||||+.+.+
T Consensus 81 ~di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~ 130 (543)
T 3m6a_A 81 EEHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAK 130 (543)
T ss_dssp HHCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHH
Confidence 3478888877777554432 122456899999999999999999987
No 248
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=93.11 E-value=0.075 Score=52.50 Aligned_cols=23 Identities=17% Similarity=0.115 Sum_probs=20.5
Q ss_pred CcEEEEEEecCCCchHHHHHHhh
Q 040913 189 GLSVVAILDSSGFDKTAFAADTY 211 (425)
Q Consensus 189 ~~~vi~IvG~gGvGKTtLa~~v~ 211 (425)
...+|.++|.+|+||||++..+.
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA 118 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLA 118 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 47899999999999999987775
No 249
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=93.11 E-value=0.088 Score=49.67 Aligned_cols=80 Identities=9% Similarity=0.093 Sum_probs=45.2
Q ss_pred EEEEEEecCCCchHHHHHHhhcCccccccc--cchHHH------HHHHHHHhCCCCCCC-ccCCCCHHHH-HHHHHHH--
Q 040913 191 SVVAILDSSGFDKTAFAADTYNNNHVKFYF--DCLAWI------LDDIIRSLMPPSRVT-VIIGEDYKLK-KSILRDF-- 258 (425)
Q Consensus 191 ~vi~IvG~gGvGKTtLa~~v~~~~~~~~~F--~~~~wv------~~~il~~l~~~~~~~-~~~~~~~~~l-~~~l~~~-- 258 (425)
.++-|.|++|+|||||+.++... ....+ ..++|+ .....+.++.....- -....+.++. ...+...
T Consensus 29 GiteI~G~pGsGKTtL~Lq~~~~--~~~~g~g~~vlyId~E~s~~~~ra~~lGvd~d~llv~~~~~~E~~~l~i~~~l~~ 106 (333)
T 3io5_A 29 GLLILAGPSKSFKSNFGLTMVSS--YMRQYPDAVCLFYDSEFGITPAYLRSMGVDPERVIHTPVQSLEQLRIDMVNQLDA 106 (333)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHH--HHHHCTTCEEEEEESSCCCCHHHHHHTTCCGGGEEEEECSBHHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHH--HHhcCCCceEEEEeccchhhHHHHHHhCCCHHHeEEEcCCCHHHHHHHHHHHHHH
Confidence 37899999999999998877652 21111 123444 122355555443211 1123355555 4333332
Q ss_pred h-cCCeEEEEecccC
Q 040913 259 L-TNKKYFIALDDVC 272 (425)
Q Consensus 259 l-~~kr~LlVLDdvw 272 (425)
+ +++.-|||+|-|.
T Consensus 107 i~~~~~~lvVIDSI~ 121 (333)
T 3io5_A 107 IERGEKVVVFIDSLG 121 (333)
T ss_dssp CCTTCCEEEEEECST
T ss_pred hhccCceEEEEeccc
Confidence 3 3567899999985
No 250
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=93.10 E-value=0.048 Score=48.36 Aligned_cols=22 Identities=9% Similarity=0.061 Sum_probs=19.9
Q ss_pred EEEEEEecCCCchHHHHHHhhc
Q 040913 191 SVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 191 ~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
..|.|.|++|+||||+|+.+..
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4688999999999999999876
No 251
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=93.08 E-value=0.077 Score=51.46 Aligned_cols=35 Identities=11% Similarity=0.048 Sum_probs=26.0
Q ss_pred HHHHHHhcCCCCcEEEEEEecCCCchHHHHHHhhc
Q 040913 178 EWFDLLIEGPIGLSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 178 ~l~~~L~~~~~~~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
.+++-+.-.-....+++|+|+.|+|||||++.+..
T Consensus 157 ~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 157 DFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp HHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHh
Confidence 34444433333456899999999999999999886
No 252
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=93.04 E-value=0.05 Score=48.20 Aligned_cols=23 Identities=22% Similarity=0.206 Sum_probs=20.4
Q ss_pred cEEEEEEecCCCchHHHHHHhhc
Q 040913 190 LSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
-.++.|+|.+|+|||||+..+..
T Consensus 23 G~~~~i~G~~GsGKTtl~~~l~~ 45 (235)
T 2w0m_A 23 GFFIALTGEPGTGKTIFSLHFIA 45 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 46889999999999999998874
No 253
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=93.03 E-value=0.048 Score=48.65 Aligned_cols=21 Identities=14% Similarity=0.120 Sum_probs=19.1
Q ss_pred EEEEEecCCCchHHHHHHhhc
Q 040913 192 VVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 192 vi~IvG~gGvGKTtLa~~v~~ 212 (425)
.|.|.|+.|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999876
No 254
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=93.02 E-value=0.06 Score=44.44 Aligned_cols=23 Identities=13% Similarity=0.198 Sum_probs=20.2
Q ss_pred EEEEEEecCCCchHHHHHHhhcC
Q 040913 191 SVVAILDSSGFDKTAFAADTYNN 213 (425)
Q Consensus 191 ~vi~IvG~gGvGKTtLa~~v~~~ 213 (425)
+-|.++|.+|+|||||...+.+.
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 45889999999999999998764
No 255
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=92.99 E-value=0.072 Score=55.15 Aligned_cols=42 Identities=14% Similarity=0.052 Sum_probs=35.5
Q ss_pred CCcccchhhHHHHHHHHhcCCCCcEEEEEEecCCCchHHHHHHhhc
Q 040913 167 LDISEFERAREEWFDLLIEGPIGLSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 167 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
..++|.+..++.+...+..+ ..+.|+|++|+||||||+.+..
T Consensus 41 ~~i~G~~~~l~~l~~~i~~g----~~vll~Gp~GtGKTtlar~ia~ 82 (604)
T 3k1j_A 41 DQVIGQEHAVEVIKTAANQK----RHVLLIGEPGTGKSMLGQAMAE 82 (604)
T ss_dssp HHCCSCHHHHHHHHHHHHTT----CCEEEECCTTSSHHHHHHHHHH
T ss_pred ceEECchhhHhhccccccCC----CEEEEEeCCCCCHHHHHHHHhc
Confidence 46889888888887777765 3788999999999999999987
No 256
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=92.99 E-value=0.06 Score=51.23 Aligned_cols=23 Identities=13% Similarity=0.307 Sum_probs=21.2
Q ss_pred cEEEEEEecCCCchHHHHHHhhc
Q 040913 190 LSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
.++|.|+|+.|+||||||..+..
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~ 62 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAA 62 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHT
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999887
No 257
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=92.97 E-value=0.051 Score=50.65 Aligned_cols=22 Identities=14% Similarity=0.335 Sum_probs=20.3
Q ss_pred EEEEEEecCCCchHHHHHHhhc
Q 040913 191 SVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 191 ~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999999886
No 258
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=92.94 E-value=0.046 Score=47.45 Aligned_cols=24 Identities=25% Similarity=0.338 Sum_probs=20.9
Q ss_pred cEEEEEEecCCCchHHHHHHhhcC
Q 040913 190 LSVVAILDSSGFDKTAFAADTYNN 213 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~~ 213 (425)
...|+|+|..|+|||||.+.+...
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 356889999999999999998774
No 259
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=92.92 E-value=0.13 Score=54.80 Aligned_cols=98 Identities=16% Similarity=0.140 Sum_probs=59.6
Q ss_pred CCCCCCCcccchhhHHHHHHHHhcC-----------CCCcEEEEEEecCCCchHHHHHHhhcCccccccccchHHHHHHH
Q 040913 162 EGQPRLDISEFERAREEWFDLLIEG-----------PIGLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWILDDI 230 (425)
Q Consensus 162 ~~~~~~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~IvG~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~~i 230 (425)
+.+.-.++.|.++.++.|.+.+.-. -...+-|.++|++|.|||.||+++.+ +....|-..- ..++
T Consensus 472 p~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~--e~~~~f~~v~--~~~l 547 (806)
T 3cf2_A 472 PQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIAN--ECQANFISIK--GPEL 547 (806)
T ss_dssp CCCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHH--TTTCEEEECC--HHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHH--HhCCceEEec--cchh
Confidence 4444566788888888887765432 12234567899999999999999999 4444442100 1111
Q ss_pred HHHhCCCCCCCccCCCCHHHHHHHHHHHhcCCeEEEEecccC
Q 040913 231 IRSLMPPSRVTVIIGEDYKLKKSILRDFLTNKKYFIALDDVC 272 (425)
Q Consensus 231 l~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~kr~LlVLDdvw 272 (425)
+.. ....+...+...+...-+...+.|++|++.
T Consensus 548 ~s~---------~vGese~~vr~lF~~Ar~~~P~IifiDEiD 580 (806)
T 3cf2_A 548 LTM---------WFGESEANVREIFDKARQAAPCVLFFDELD 580 (806)
T ss_dssp HTT---------TCSSCHHHHHHHHHHHHTTCSEEEECSCGG
T ss_pred hcc---------ccchHHHHHHHHHHHHHHcCCceeechhhh
Confidence 111 112333444444444445678999999995
No 260
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=92.91 E-value=0.059 Score=48.98 Aligned_cols=23 Identities=17% Similarity=0.276 Sum_probs=20.4
Q ss_pred CcEEEEEEecCCCchHHHHHHhh
Q 040913 189 GLSVVAILDSSGFDKTAFAADTY 211 (425)
Q Consensus 189 ~~~vi~IvG~gGvGKTtLa~~v~ 211 (425)
...++.+.|.||+|||||+..+.
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La 35 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFG 35 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHH
T ss_pred ceEEEEEeCCCCCCHHHHHHHHH
Confidence 46788899999999999998886
No 261
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=92.89 E-value=0.056 Score=44.65 Aligned_cols=22 Identities=18% Similarity=0.392 Sum_probs=19.4
Q ss_pred EEEEEecCCCchHHHHHHhhcC
Q 040913 192 VVAILDSSGFDKTAFAADTYNN 213 (425)
Q Consensus 192 vi~IvG~gGvGKTtLa~~v~~~ 213 (425)
-|.++|.+|+|||||...+.+.
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999998764
No 262
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=92.86 E-value=0.056 Score=53.09 Aligned_cols=24 Identities=21% Similarity=0.282 Sum_probs=21.9
Q ss_pred CcEEEEEEecCCCchHHHHHHhhc
Q 040913 189 GLSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 189 ~~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
...+++|+|..|+|||||.+.+..
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~G 91 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRG 91 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHT
T ss_pred CCeEEEEECCCCCcHHHHHHHHhC
Confidence 467999999999999999999876
No 263
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=92.85 E-value=0.09 Score=49.26 Aligned_cols=23 Identities=22% Similarity=0.185 Sum_probs=20.3
Q ss_pred cEEEEEEecCCCchHHHHHHhhc
Q 040913 190 LSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
..+|.++|.+|+||||++..+..
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~ 120 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAY 120 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 67999999999999999887763
No 264
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=92.85 E-value=0.072 Score=46.95 Aligned_cols=36 Identities=8% Similarity=0.014 Sum_probs=26.1
Q ss_pred HHHHHHHHhcCCCCcEEEEEEecCCCchHHHHHHhhc
Q 040913 176 REEWFDLLIEGPIGLSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 176 ~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
...+..++.. -+....+.|+|++|+||||+|..+.+
T Consensus 45 ~~~l~~~~~~-iPkkn~ili~GPPGtGKTt~a~ala~ 80 (212)
T 1tue_A 45 LGALKSFLKG-TPKKNCLVFCGPANTGKSYFGMSFIH 80 (212)
T ss_dssp HHHHHHHHHT-CTTCSEEEEESCGGGCHHHHHHHHHH
T ss_pred HHHHHHHHhc-CCcccEEEEECCCCCCHHHHHHHHHH
Confidence 4555555553 22234689999999999999988877
No 265
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=92.85 E-value=0.053 Score=51.00 Aligned_cols=24 Identities=8% Similarity=0.152 Sum_probs=21.1
Q ss_pred CcEEEEEEecCCCchHHHHHHhhc
Q 040913 189 GLSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 189 ~~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
.-.+++|+|+.|.|||||++.+..
T Consensus 125 ~Ge~vaIvGpsGsGKSTLl~lL~g 148 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSMLCNSLIH 148 (305)
T ss_dssp TCSEEEEECSSSSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhh
Confidence 356899999999999999998875
No 266
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=92.81 E-value=0.061 Score=51.80 Aligned_cols=82 Identities=15% Similarity=0.013 Sum_probs=43.6
Q ss_pred CcEEEEEEecCCCchHHHHHHhhcCccccccccchHHH------HHHHHHHhCCCCCCC-ccCCCCHHHHHHHHHHHhc-
Q 040913 189 GLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWI------LDDIIRSLMPPSRVT-VIIGEDYKLKKSILRDFLT- 260 (425)
Q Consensus 189 ~~~vi~IvG~gGvGKTtLa~~v~~~~~~~~~F~~~~wv------~~~il~~l~~~~~~~-~~~~~~~~~l~~~l~~~l~- 260 (425)
.-.++.|.|.+|+||||||.++........ ..++|+ -......+......- -....+.+++...+....+
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~~~~g--~~vlyid~E~s~~~~~a~~~g~~~~~l~i~~~~~~e~~~~~~~~l~~~ 139 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAAQREG--KTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARS 139 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHTT--CCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCC--CeEEEEeCCCCccHHHHHHcCCChhheeeeCCCCHHHHHHHHHHHHhc
Confidence 356889999999999999988765211110 012222 011233333221100 0112345556555555443
Q ss_pred CCeEEEEecccC
Q 040913 261 NKKYFIALDDVC 272 (425)
Q Consensus 261 ~kr~LlVLDdvw 272 (425)
.+--+||+|.+-
T Consensus 140 ~~~~lVVIDsl~ 151 (356)
T 1u94_A 140 GAVDVIVVDSVA 151 (356)
T ss_dssp TCCSEEEEECGG
T ss_pred cCCCEEEEcCHH
Confidence 455599999984
No 267
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=92.80 E-value=0.054 Score=50.04 Aligned_cols=21 Identities=14% Similarity=0.445 Sum_probs=19.3
Q ss_pred EEEEEecCCCchHHHHHHhhc
Q 040913 192 VVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 192 vi~IvG~gGvGKTtLa~~v~~ 212 (425)
.++|+|..|+|||||.+.++.
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g 24 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFK 24 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 579999999999999999886
No 268
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=92.77 E-value=0.087 Score=54.46 Aligned_cols=24 Identities=21% Similarity=0.151 Sum_probs=21.2
Q ss_pred CcEEEEEEecCCCchHHHHHHhhc
Q 040913 189 GLSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 189 ~~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
.-.+++|+|+.|.|||||++.+..
T Consensus 380 ~G~~~~ivG~sGsGKSTll~~l~g 403 (598)
T 3qf4_B 380 PGQKVALVGPTGSGKTTIVNLLMR 403 (598)
T ss_dssp TTCEEEEECCTTSSTTHHHHHHTT
T ss_pred CCCEEEEECCCCCcHHHHHHHHhc
Confidence 356899999999999999999875
No 269
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=92.77 E-value=0.057 Score=48.45 Aligned_cols=23 Identities=17% Similarity=0.082 Sum_probs=20.6
Q ss_pred cEEEEEEecCCCchHHHHHHhhc
Q 040913 190 LSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
...|.|.|+.|+||||+|+.+.+
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45788999999999999999877
No 270
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=92.75 E-value=0.058 Score=51.11 Aligned_cols=22 Identities=14% Similarity=0.225 Sum_probs=20.1
Q ss_pred EEEEEEecCCCchHHHHHHhhc
Q 040913 191 SVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 191 ~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
++|.|+|+.|+||||||..+..
T Consensus 6 ~~i~i~GptGsGKTtla~~La~ 27 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALAD 27 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999998876
No 271
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=92.75 E-value=0.086 Score=54.35 Aligned_cols=23 Identities=26% Similarity=0.249 Sum_probs=20.7
Q ss_pred cEEEEEEecCCCchHHHHHHhhc
Q 040913 190 LSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
-.+++|+|+.|.|||||++.+..
T Consensus 369 Ge~~~ivG~sGsGKSTll~~l~g 391 (587)
T 3qf4_A 369 GSLVAVLGETGSGKSTLMNLIPR 391 (587)
T ss_dssp TCEEEEECSSSSSHHHHHHTTTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 46899999999999999998875
No 272
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=92.73 E-value=0.058 Score=48.26 Aligned_cols=23 Identities=13% Similarity=0.007 Sum_probs=20.6
Q ss_pred cEEEEEEecCCCchHHHHHHhhc
Q 040913 190 LSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
-.++.|+|.+|+|||||+..+..
T Consensus 24 G~~~~i~G~~GsGKTtl~~~l~~ 46 (243)
T 1n0w_A 24 GSITEMFGEFRTGKTQICHTLAV 46 (243)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHH
Confidence 46899999999999999998776
No 273
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=92.69 E-value=0.033 Score=52.03 Aligned_cols=23 Identities=13% Similarity=0.195 Sum_probs=17.9
Q ss_pred cEEEEEEecCCCchHHHHHHhhc
Q 040913 190 LSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
..+|+|.|..|+||||+|+.+.+
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999998876
No 274
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=92.68 E-value=0.059 Score=49.56 Aligned_cols=22 Identities=27% Similarity=0.282 Sum_probs=19.8
Q ss_pred EEEEEEecCCCchHHHHHHhhc
Q 040913 191 SVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 191 ~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
.+++|+|+.|+|||||.+.+..
T Consensus 31 e~~~i~G~NGsGKSTLlk~l~G 52 (263)
T 2pjz_A 31 EKVIILGPNGSGKTTLLRAISG 52 (263)
T ss_dssp SEEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHhC
Confidence 4799999999999999998864
No 275
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=92.67 E-value=0.072 Score=45.42 Aligned_cols=24 Identities=8% Similarity=0.123 Sum_probs=21.1
Q ss_pred cEEEEEEecCCCchHHHHHHhhcC
Q 040913 190 LSVVAILDSSGFDKTAFAADTYNN 213 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~~ 213 (425)
...|+++|.+|+|||||...+.+.
T Consensus 7 ~~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 7 SYEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 457899999999999999998874
No 276
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=92.64 E-value=0.063 Score=45.04 Aligned_cols=24 Identities=29% Similarity=0.325 Sum_probs=20.5
Q ss_pred cEEEEEEecCCCchHHHHHHhhcC
Q 040913 190 LSVVAILDSSGFDKTAFAADTYNN 213 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~~ 213 (425)
.--|.|+|.+|+|||||...+.+.
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEEEECCCCccHHHHHHHHhcC
Confidence 345889999999999999998764
No 277
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=92.63 E-value=0.061 Score=44.72 Aligned_cols=24 Identities=4% Similarity=0.126 Sum_probs=20.3
Q ss_pred cEEEEEEecCCCchHHHHHHhhcC
Q 040913 190 LSVVAILDSSGFDKTAFAADTYNN 213 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~~ 213 (425)
.--|.|+|.+|+|||||...+.+.
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 345789999999999999998764
No 278
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=92.62 E-value=0.06 Score=47.56 Aligned_cols=22 Identities=18% Similarity=0.234 Sum_probs=19.6
Q ss_pred EEEEEecCCCchHHHHHHhhcC
Q 040913 192 VVAILDSSGFDKTAFAADTYNN 213 (425)
Q Consensus 192 vi~IvG~gGvGKTtLa~~v~~~ 213 (425)
+|.|.|++|+||||.|+.+.+.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~ 23 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKE 23 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5778999999999999998873
No 279
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=92.62 E-value=0.064 Score=50.77 Aligned_cols=25 Identities=20% Similarity=0.223 Sum_probs=22.2
Q ss_pred CcEEEEEEecCCCchHHHHHHhhcC
Q 040913 189 GLSVVAILDSSGFDKTAFAADTYNN 213 (425)
Q Consensus 189 ~~~vi~IvG~gGvGKTtLa~~v~~~ 213 (425)
..+++.|+|+.|.|||||.+.+...
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHS
T ss_pred cccEEEEEecCCCCHHHHHHHHHhh
Confidence 4789999999999999999998853
No 280
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=92.61 E-value=0.066 Score=50.41 Aligned_cols=23 Identities=22% Similarity=0.176 Sum_probs=20.7
Q ss_pred cEEEEEEecCCCchHHHHHHhhc
Q 040913 190 LSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
.++|.|+|+.|+||||||..+..
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~ 25 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAK 25 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCcCCHHHHHHHHHH
Confidence 46899999999999999999876
No 281
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=92.55 E-value=0.064 Score=49.53 Aligned_cols=23 Identities=22% Similarity=0.208 Sum_probs=20.3
Q ss_pred cEEEEEEecCCCchHHHHHHhhc
Q 040913 190 LSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
-.++.|+|.+|+|||||+..+..
T Consensus 30 G~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 30 GTVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 46899999999999999988764
No 282
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=92.54 E-value=0.063 Score=48.23 Aligned_cols=24 Identities=17% Similarity=0.012 Sum_probs=21.6
Q ss_pred CcEEEEEEecCCCchHHHHHHhhc
Q 040913 189 GLSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 189 ~~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
...+|+|.|+.|+||||+++.+..
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 466899999999999999998876
No 283
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=92.53 E-value=0.073 Score=52.67 Aligned_cols=23 Identities=26% Similarity=0.260 Sum_probs=20.2
Q ss_pred cEEEEEEecCCCchHHHHHHhhc
Q 040913 190 LSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
..+|.|+|.+|+||||++..+..
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~ 121 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLAR 121 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 56999999999999999877765
No 284
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=92.49 E-value=0.12 Score=49.43 Aligned_cols=34 Identities=15% Similarity=0.086 Sum_probs=25.7
Q ss_pred HHHHHHhcCCCCcEEEEEEecCCCchHHHHHHhh
Q 040913 178 EWFDLLIEGPIGLSVVAILDSSGFDKTAFAADTY 211 (425)
Q Consensus 178 ~l~~~L~~~~~~~~vi~IvG~gGvGKTtLa~~v~ 211 (425)
.+++-+.-.-....+++|+|.+|+|||||.+.+.
T Consensus 43 ~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~ 76 (337)
T 2qm8_A 43 DLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALG 76 (337)
T ss_dssp HHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHH
T ss_pred HHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHH
Confidence 3444444333457899999999999999999886
No 285
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=92.48 E-value=0.11 Score=51.48 Aligned_cols=24 Identities=17% Similarity=0.174 Sum_probs=20.8
Q ss_pred CcEEEEEEecCCCchHHHHHHhhc
Q 040913 189 GLSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 189 ~~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
...+|.++|.+|+||||++..+..
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~ 122 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLAR 122 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHH
Confidence 478999999999999998877653
No 286
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=92.44 E-value=0.069 Score=44.39 Aligned_cols=21 Identities=29% Similarity=0.271 Sum_probs=18.7
Q ss_pred EEEEEecCCCchHHHHHHhhc
Q 040913 192 VVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 192 vi~IvG~gGvGKTtLa~~v~~ 212 (425)
-|.++|.+|+|||||...+.+
T Consensus 4 ki~~vG~~~~GKSsli~~l~~ 24 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGG 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHcC
Confidence 378999999999999998875
No 287
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=92.40 E-value=0.069 Score=49.86 Aligned_cols=23 Identities=22% Similarity=0.225 Sum_probs=20.8
Q ss_pred cEEEEEEecCCCchHHHHHHhhc
Q 040913 190 LSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
-.+++|+|+.|+|||||.+.+..
T Consensus 64 Ge~~~i~G~NGsGKSTLlk~l~G 86 (290)
T 2bbs_A 64 GQLLAVAGSTGAGKTSLLMMIMG 86 (290)
T ss_dssp TCEEEEEESTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCcHHHHHHHHhc
Confidence 46899999999999999999875
No 288
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=92.40 E-value=0.069 Score=49.75 Aligned_cols=23 Identities=22% Similarity=0.325 Sum_probs=20.1
Q ss_pred cEEEEEEecCCCchHHHHHHhhc
Q 040913 190 LSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
-.++.|+|.+|+|||||+..+..
T Consensus 35 G~~~~i~G~~G~GKTTl~~~ia~ 57 (296)
T 1cr0_A 35 GEVIMVTSGSGMGKSTFVRQQAL 57 (296)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEEeCCCCCHHHHHHHHHH
Confidence 45899999999999999988764
No 289
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=92.40 E-value=0.13 Score=51.22 Aligned_cols=36 Identities=17% Similarity=0.072 Sum_probs=25.6
Q ss_pred hhHHHHHHHHhcCCCCcEEEEEEecCCCchHHHHHHhhc
Q 040913 174 RAREEWFDLLIEGPIGLSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 174 ~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
.....+.+.+..++ +.+.|.|.+|+||||++..+..
T Consensus 32 ~av~~~~~~i~~~~---~~~li~G~aGTGKT~ll~~~~~ 67 (459)
T 3upu_A 32 NAFNIVMKAIKEKK---HHVTINGPAGTGATTLTKFIIE 67 (459)
T ss_dssp HHHHHHHHHHHSSS---CEEEEECCTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCC---CEEEEEeCCCCCHHHHHHHHHH
Confidence 33344444555433 3788999999999999988776
No 290
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=92.39 E-value=0.069 Score=44.26 Aligned_cols=23 Identities=22% Similarity=0.325 Sum_probs=20.0
Q ss_pred EEEEEEecCCCchHHHHHHhhcC
Q 040913 191 SVVAILDSSGFDKTAFAADTYNN 213 (425)
Q Consensus 191 ~vi~IvG~gGvGKTtLa~~v~~~ 213 (425)
.-|.++|.+|+|||||...+.+.
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 45789999999999999998764
No 291
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=92.35 E-value=0.077 Score=52.97 Aligned_cols=92 Identities=12% Similarity=0.138 Sum_probs=50.9
Q ss_pred HHHHHhcCCCCcEEEEEEecCCCchHHHHHHhhcCccccccccchHHH--------HHHHHHHhCCCCC---------CC
Q 040913 179 WFDLLIEGPIGLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWI--------LDDIIRSLMPPSR---------VT 241 (425)
Q Consensus 179 l~~~L~~~~~~~~vi~IvG~gGvGKTtLa~~v~~~~~~~~~F~~~~wv--------~~~il~~l~~~~~---------~~ 241 (425)
.++.|..=. .-.-++|.|..|+|||+|++.+.++. .+.+-+.++++ ..++...+..... ..
T Consensus 155 vID~l~pig-kGqr~gIfgg~GvGKT~L~~~l~~~~-a~~~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~l~~~rt 232 (498)
T 1fx0_B 155 VVNLLAPYR-RGGKIGLFGGAGVGKTVLIMELINNI-AKAHGGVSVFGGVGERTREGNDLYMEMKESGVINEQNIAESKV 232 (498)
T ss_dssp THHHHSCCC-TTCCEEEEECSSSSHHHHHHHHHHHT-TTTCSSCEEEEEESCCSHHHHHHHHHHHHTTSSCSSTTCCCCE
T ss_pred Eeeeecccc-cCCeEEeecCCCCCchHHHHHHHHHH-HhhCCCEEEEEEcccCcHHHHHHHHhhhcccccccccccccce
Confidence 455555422 12357899999999999998887731 12233444444 4555555432210 00
Q ss_pred ----ccCC------CCHHHHHHHHHHHhc---CCeEEEEecccC
Q 040913 242 ----VIIG------EDYKLKKSILRDFLT---NKKYFIALDDVC 272 (425)
Q Consensus 242 ----~~~~------~~~~~l~~~l~~~l~---~kr~LlVLDdvw 272 (425)
...+ .-.....-.+.++++ ++.+||++||+-
T Consensus 233 vvV~~t~d~p~~~R~~~~~~altiAEyfrd~~G~dVLl~~Dsit 276 (498)
T 1fx0_B 233 ALVYGQMNEPPGARMRVGLTALTMAEYFRDVNEQDVLLFIDNIF 276 (498)
T ss_dssp EEEEECTTSCHHHHTTHHHHHHHTHHHHTTTSCCEEEEEEECSH
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccHH
Confidence 0011 111223344555554 589999999983
No 292
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=92.33 E-value=0.049 Score=51.31 Aligned_cols=23 Identities=17% Similarity=0.238 Sum_probs=20.7
Q ss_pred cEEEEEEecCCCchHHHHHHhhc
Q 040913 190 LSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
-.+++|+|+.|.|||||++.+..
T Consensus 80 Ge~vaivG~sGsGKSTLl~ll~g 102 (306)
T 3nh6_A 80 GQTLALVGPSGAGKSTILRLLFR 102 (306)
T ss_dssp TCEEEEESSSCHHHHHHHHHHTT
T ss_pred CCEEEEECCCCchHHHHHHHHHc
Confidence 46899999999999999999865
No 293
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=92.33 E-value=0.14 Score=48.91 Aligned_cols=35 Identities=11% Similarity=0.075 Sum_probs=25.5
Q ss_pred HHHHHHhcCCCCcEEEEEEecCCCchHHHHHHhhc
Q 040913 178 EWFDLLIEGPIGLSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 178 ~l~~~L~~~~~~~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
.+.+-+........+|+|+|.+|+|||||+..+..
T Consensus 44 ~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~ 78 (341)
T 2p67_A 44 QLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGM 78 (341)
T ss_dssp HHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHH
T ss_pred HHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHH
Confidence 34443333334578999999999999999988753
No 294
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=92.28 E-value=0.07 Score=45.64 Aligned_cols=23 Identities=17% Similarity=0.348 Sum_probs=20.0
Q ss_pred EEEEEEecCCCchHHHHHHhhcC
Q 040913 191 SVVAILDSSGFDKTAFAADTYNN 213 (425)
Q Consensus 191 ~vi~IvG~gGvGKTtLa~~v~~~ 213 (425)
--|.++|.+|+|||||+..+.+.
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 45789999999999999998764
No 295
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=92.27 E-value=0.079 Score=45.27 Aligned_cols=22 Identities=18% Similarity=0.249 Sum_probs=19.6
Q ss_pred EEEEEEecCCCchHHHHHHhhc
Q 040913 191 SVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 191 ~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
.+..|+|..|+|||||+..++-
T Consensus 27 g~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 27 GFTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp SEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999998864
No 296
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=92.25 E-value=0.071 Score=45.75 Aligned_cols=25 Identities=12% Similarity=0.016 Sum_probs=21.5
Q ss_pred CcEEEEEEecCCCchHHHHHHhhcC
Q 040913 189 GLSVVAILDSSGFDKTAFAADTYNN 213 (425)
Q Consensus 189 ~~~vi~IvG~gGvGKTtLa~~v~~~ 213 (425)
....|.|+|.+|+|||||...+.+.
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3557889999999999999998874
No 297
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=92.24 E-value=0.081 Score=49.50 Aligned_cols=23 Identities=22% Similarity=0.078 Sum_probs=20.4
Q ss_pred cEEEEEEecCCCchHHHHHHhhc
Q 040913 190 LSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
..+++|+|.+|+||||++..+..
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la~ 120 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLAL 120 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 67999999999999999988764
No 298
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=92.23 E-value=0.1 Score=43.86 Aligned_cols=25 Identities=20% Similarity=0.222 Sum_probs=21.4
Q ss_pred CcEEEEEEecCCCchHHHHHHhhcC
Q 040913 189 GLSVVAILDSSGFDKTAFAADTYNN 213 (425)
Q Consensus 189 ~~~vi~IvG~gGvGKTtLa~~v~~~ 213 (425)
....|.|+|.+|+|||||...+.+.
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3567889999999999999998764
No 299
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=92.21 E-value=0.076 Score=44.97 Aligned_cols=23 Identities=13% Similarity=0.073 Sum_probs=20.2
Q ss_pred EEEEEEecCCCchHHHHHHhhcC
Q 040913 191 SVVAILDSSGFDKTAFAADTYNN 213 (425)
Q Consensus 191 ~vi~IvG~gGvGKTtLa~~v~~~ 213 (425)
..|+|+|.+|+|||||...+...
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 45789999999999999998764
No 300
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=92.19 E-value=0.09 Score=43.81 Aligned_cols=24 Identities=21% Similarity=0.173 Sum_probs=20.5
Q ss_pred cEEEEEEecCCCchHHHHHHhhcC
Q 040913 190 LSVVAILDSSGFDKTAFAADTYNN 213 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~~ 213 (425)
.--|.|+|.+|+|||||...+.+.
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 6 SFKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 345789999999999999988764
No 301
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=92.19 E-value=0.074 Score=44.29 Aligned_cols=23 Identities=17% Similarity=0.287 Sum_probs=19.8
Q ss_pred EEEEEEecCCCchHHHHHHhhcC
Q 040913 191 SVVAILDSSGFDKTAFAADTYNN 213 (425)
Q Consensus 191 ~vi~IvG~gGvGKTtLa~~v~~~ 213 (425)
--|.++|.+|+|||||...+.+.
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 34789999999999999998764
No 302
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=92.15 E-value=0.076 Score=44.07 Aligned_cols=22 Identities=23% Similarity=0.385 Sum_probs=19.4
Q ss_pred EEEEEecCCCchHHHHHHhhcC
Q 040913 192 VVAILDSSGFDKTAFAADTYNN 213 (425)
Q Consensus 192 vi~IvG~gGvGKTtLa~~v~~~ 213 (425)
-|.|+|.+|+|||||...+.+.
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999998764
No 303
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=92.15 E-value=0.056 Score=53.70 Aligned_cols=35 Identities=23% Similarity=0.297 Sum_probs=25.2
Q ss_pred HHHHHHhcCCCCcEEEEEEecCCCchHHHHHHhhcC
Q 040913 178 EWFDLLIEGPIGLSVVAILDSSGFDKTAFAADTYNN 213 (425)
Q Consensus 178 ~l~~~L~~~~~~~~vi~IvG~gGvGKTtLa~~v~~~ 213 (425)
+.++.|..=. .-.-++|+|..|+|||+|++.+.++
T Consensus 142 r~ID~l~pig-kGQr~~Ifgg~G~GKT~L~~~i~~~ 176 (482)
T 2ck3_D 142 KVVDLLAPYA-KGGKIGLFGGAGVGKTVLIMELINN 176 (482)
T ss_dssp HHHHHHSCEE-TTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEecccccc-cCCeeeeecCCCCChHHHHHHHHHh
Confidence 4566665421 1345789999999999999888773
No 304
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=92.12 E-value=0.077 Score=44.24 Aligned_cols=22 Identities=23% Similarity=0.252 Sum_probs=19.0
Q ss_pred EEEEEEecCCCchHHHHHHhhc
Q 040913 191 SVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 191 ~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
--|.|+|.+|+|||||...+.+
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHHh
Confidence 3478999999999999998864
No 305
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=92.12 E-value=0.077 Score=44.10 Aligned_cols=22 Identities=14% Similarity=0.243 Sum_probs=19.2
Q ss_pred EEEEEecCCCchHHHHHHhhcC
Q 040913 192 VVAILDSSGFDKTAFAADTYNN 213 (425)
Q Consensus 192 vi~IvG~gGvGKTtLa~~v~~~ 213 (425)
-|.++|.+|+|||||...+.+.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999988764
No 306
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=92.12 E-value=0.08 Score=49.74 Aligned_cols=24 Identities=17% Similarity=0.166 Sum_probs=21.4
Q ss_pred CcEEEEEEecCCCchHHHHHHhhc
Q 040913 189 GLSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 189 ~~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
..++|.|+|+.|+||||||..+..
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~ 32 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRK 32 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECCCccCHHHHHHHHHH
Confidence 357899999999999999999876
No 307
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=92.09 E-value=0.13 Score=51.88 Aligned_cols=23 Identities=17% Similarity=0.170 Sum_probs=19.6
Q ss_pred CcEEEEEEecCCCchHHHHHHhh
Q 040913 189 GLSVVAILDSSGFDKTAFAADTY 211 (425)
Q Consensus 189 ~~~vi~IvG~gGvGKTtLa~~v~ 211 (425)
...+|.|+|.+|+||||++..+.
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA 122 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLA 122 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 46799999999999999998876
No 308
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=92.06 E-value=0.079 Score=43.81 Aligned_cols=22 Identities=27% Similarity=0.406 Sum_probs=19.2
Q ss_pred EEEEEecCCCchHHHHHHhhcC
Q 040913 192 VVAILDSSGFDKTAFAADTYNN 213 (425)
Q Consensus 192 vi~IvG~gGvGKTtLa~~v~~~ 213 (425)
-|.|+|.+|+|||||...+.+.
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999888754
No 309
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=92.06 E-value=0.079 Score=44.09 Aligned_cols=23 Identities=17% Similarity=0.260 Sum_probs=19.9
Q ss_pred EEEEEEecCCCchHHHHHHhhcC
Q 040913 191 SVVAILDSSGFDKTAFAADTYNN 213 (425)
Q Consensus 191 ~vi~IvG~gGvGKTtLa~~v~~~ 213 (425)
--|.|+|.+|+|||||...+.+.
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVED 29 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 35789999999999999998764
No 310
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=92.05 E-value=0.069 Score=46.58 Aligned_cols=24 Identities=21% Similarity=0.018 Sum_probs=21.2
Q ss_pred cEEEEEEecCCCchHHHHHHhhcC
Q 040913 190 LSVVAILDSSGFDKTAFAADTYNN 213 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~~ 213 (425)
...|+|+|..|+|||||.+.+...
T Consensus 26 ~~~v~lvG~~g~GKSTLl~~l~g~ 49 (210)
T 1pui_A 26 GIEVAFAGRSNAGKSSALNTLTNQ 49 (210)
T ss_dssp SEEEEEEECTTSSHHHHHTTTCCC
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 567999999999999999988764
No 311
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=92.01 E-value=0.084 Score=47.38 Aligned_cols=25 Identities=16% Similarity=0.260 Sum_probs=22.0
Q ss_pred CcEEEEEEecCCCchHHHHHHhhcC
Q 040913 189 GLSVVAILDSSGFDKTAFAADTYNN 213 (425)
Q Consensus 189 ~~~vi~IvG~gGvGKTtLa~~v~~~ 213 (425)
....|.|.|+.|+||||+++.+.+.
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 3578999999999999999998873
No 312
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=91.97 E-value=0.1 Score=43.90 Aligned_cols=25 Identities=24% Similarity=0.292 Sum_probs=21.4
Q ss_pred CcEEEEEEecCCCchHHHHHHhhcC
Q 040913 189 GLSVVAILDSSGFDKTAFAADTYNN 213 (425)
Q Consensus 189 ~~~vi~IvG~gGvGKTtLa~~v~~~ 213 (425)
...-|.|+|.+|+|||||...+.+.
T Consensus 8 ~~~~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 8 HLFKLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHCSC
T ss_pred cceEEEEECCCCCCHHHHHHHHhcC
Confidence 4556889999999999999998764
No 313
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=91.95 E-value=0.085 Score=45.01 Aligned_cols=24 Identities=17% Similarity=0.131 Sum_probs=20.4
Q ss_pred cEEEEEEecCCCchHHHHHHhhcC
Q 040913 190 LSVVAILDSSGFDKTAFAADTYNN 213 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~~ 213 (425)
.--|.|+|.+|+|||||...+.+.
T Consensus 7 ~~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 7 KCKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEEECCCCCCHHHHHHHHhcC
Confidence 445789999999999999998764
No 314
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=91.94 E-value=0.082 Score=44.55 Aligned_cols=25 Identities=32% Similarity=0.396 Sum_probs=21.1
Q ss_pred CcEEEEEEecCCCchHHHHHHhhcC
Q 040913 189 GLSVVAILDSSGFDKTAFAADTYNN 213 (425)
Q Consensus 189 ~~~vi~IvG~gGvGKTtLa~~v~~~ 213 (425)
...-|.|+|.+|+|||||...+.+.
T Consensus 7 ~~~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 7 NILKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhC
Confidence 3556889999999999999988764
No 315
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=91.93 E-value=0.19 Score=46.00 Aligned_cols=37 Identities=11% Similarity=0.207 Sum_probs=26.7
Q ss_pred HHHHHHhcCCCCcEEEEEEecCCCchHHHHHHhhcCc
Q 040913 178 EWFDLLIEGPIGLSVVAILDSSGFDKTAFAADTYNNN 214 (425)
Q Consensus 178 ~l~~~L~~~~~~~~vi~IvG~gGvGKTtLa~~v~~~~ 214 (425)
+++..+.........|.++|.+|+|||||...+.+..
T Consensus 27 ~~~~~~~~~~~~~~~I~vvG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 27 ELLGNLKQEDVNSLTILVMGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp HHHHHHHHTTCCEEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred HHHHHHhhcCCCCeEEEEECCCCCCHHHHHHHHhCCC
Confidence 3444444444445678899999999999999988743
No 316
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=91.93 E-value=0.094 Score=47.20 Aligned_cols=24 Identities=13% Similarity=0.080 Sum_probs=21.2
Q ss_pred cEEEEEEecCCCchHHHHHHhhcC
Q 040913 190 LSVVAILDSSGFDKTAFAADTYNN 213 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~~ 213 (425)
...|.|.|..|+||||+++.+.+.
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~ 25 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKT 25 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Confidence 467999999999999999998873
No 317
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=91.89 E-value=0.11 Score=44.25 Aligned_cols=25 Identities=20% Similarity=0.300 Sum_probs=21.4
Q ss_pred cEEEEEEecCCCchHHHHHHhhcCc
Q 040913 190 LSVVAILDSSGFDKTAFAADTYNNN 214 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~~~ 214 (425)
...|.|+|.+|+|||||...+.+..
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 23 KGEVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp TCEEEEEEBTTSSHHHHHHHHHTSC
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCc
Confidence 4568899999999999999988753
No 318
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=91.88 E-value=0.55 Score=46.58 Aligned_cols=24 Identities=25% Similarity=0.350 Sum_probs=20.7
Q ss_pred cEEEEEEecCCCchHHHHHHhhcC
Q 040913 190 LSVVAILDSSGFDKTAFAADTYNN 213 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~~ 213 (425)
-.++.|.|.+|+|||||+..+..+
T Consensus 203 G~liiI~G~pG~GKTtl~l~ia~~ 226 (454)
T 2r6a_A 203 SDLIIVAARPSVGKTAFALNIAQN 226 (454)
T ss_dssp TCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 458899999999999999887653
No 319
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=91.85 E-value=0.086 Score=50.71 Aligned_cols=23 Identities=22% Similarity=0.215 Sum_probs=20.4
Q ss_pred cEEEEEEecCCCchHHHHHHhhc
Q 040913 190 LSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
-.+++|+|+.|.|||||.+.+..
T Consensus 30 Ge~~~llGpsGsGKSTLLr~iaG 52 (359)
T 3fvq_A 30 GEILFIIGASGCGKTTLLRCLAG 52 (359)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCchHHHHHHHHhc
Confidence 45899999999999999999864
No 320
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=91.85 E-value=0.093 Score=44.69 Aligned_cols=22 Identities=9% Similarity=0.105 Sum_probs=19.4
Q ss_pred EEEEEecCCCchHHHHHHhhcC
Q 040913 192 VVAILDSSGFDKTAFAADTYNN 213 (425)
Q Consensus 192 vi~IvG~gGvGKTtLa~~v~~~ 213 (425)
-|.|+|.+|+|||||...+.+.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 4789999999999999998774
No 321
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=91.84 E-value=0.11 Score=44.60 Aligned_cols=25 Identities=28% Similarity=0.444 Sum_probs=21.5
Q ss_pred CcEEEEEEecCCCchHHHHHHhhcC
Q 040913 189 GLSVVAILDSSGFDKTAFAADTYNN 213 (425)
Q Consensus 189 ~~~vi~IvG~gGvGKTtLa~~v~~~ 213 (425)
....|.|+|.+|+|||||...+.+.
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3566889999999999999998774
No 322
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=91.83 E-value=0.09 Score=43.74 Aligned_cols=23 Identities=13% Similarity=0.286 Sum_probs=19.8
Q ss_pred EEEEEEecCCCchHHHHHHhhcC
Q 040913 191 SVVAILDSSGFDKTAFAADTYNN 213 (425)
Q Consensus 191 ~vi~IvG~gGvGKTtLa~~v~~~ 213 (425)
--|.|+|.+|+|||||...+.+.
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 45789999999999999988764
No 323
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=91.81 E-value=0.082 Score=45.92 Aligned_cols=34 Identities=12% Similarity=-0.021 Sum_probs=24.1
Q ss_pred HHHHHhcCCCCcEEEEEEecCCCchHHHHHHhhcC
Q 040913 179 WFDLLIEGPIGLSVVAILDSSGFDKTAFAADTYNN 213 (425)
Q Consensus 179 l~~~L~~~~~~~~vi~IvG~gGvGKTtLa~~v~~~ 213 (425)
+++.+.-... ..-|.++|.+|+|||||...+.+.
T Consensus 15 ~l~~~~~~~~-~~ki~lvG~~~vGKSsLi~~l~~~ 48 (198)
T 1f6b_A 15 VLQFLGLYKK-TGKLVFLGLDNAGKTTLLHMLKDD 48 (198)
T ss_dssp HHHHHTCTTC-CEEEEEEEETTSSHHHHHHHHSCC
T ss_pred HHHHhhccCC-CcEEEEECCCCCCHHHHHHHHhcC
Confidence 4444432222 345789999999999999998763
No 324
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=91.77 E-value=0.2 Score=45.78 Aligned_cols=37 Identities=19% Similarity=0.308 Sum_probs=27.2
Q ss_pred HHHHHHhcCCCCcEEEEEEecCCCchHHHHHHhhcCc
Q 040913 178 EWFDLLIEGPIGLSVVAILDSSGFDKTAFAADTYNNN 214 (425)
Q Consensus 178 ~l~~~L~~~~~~~~vi~IvG~gGvGKTtLa~~v~~~~ 214 (425)
++.+.+.........|+++|..|+|||||...+....
T Consensus 24 ~~~~~~~~~~~~~~~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 24 EFFGKLKQKDMNSMTVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp HHHHHHHHTTCCEEEEEEEECTTSSHHHHHHHHHTSC
T ss_pred HHHHHHhhccCCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 4444444444445678999999999999999988743
No 325
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=91.76 E-value=0.13 Score=43.26 Aligned_cols=25 Identities=12% Similarity=0.255 Sum_probs=21.4
Q ss_pred CcEEEEEEecCCCchHHHHHHhhcC
Q 040913 189 GLSVVAILDSSGFDKTAFAADTYNN 213 (425)
Q Consensus 189 ~~~vi~IvG~gGvGKTtLa~~v~~~ 213 (425)
...-|.|+|..|+|||||...+.+.
T Consensus 8 ~~~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 8 ETHKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 3566889999999999999998764
No 326
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=91.72 E-value=0.083 Score=45.22 Aligned_cols=23 Identities=13% Similarity=-0.094 Sum_probs=19.3
Q ss_pred cEEEEEEecCCCchHHHHHHhhc
Q 040913 190 LSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
.--|.|+|.+|+|||||.+.+.+
T Consensus 14 ~~ki~vvG~~~~GKssL~~~l~~ 36 (198)
T 3t1o_A 14 NFKIVYYGPGLSGKTTNLKWIYS 36 (198)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHHh
Confidence 34578999999999999987765
No 327
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=91.68 E-value=0.091 Score=44.15 Aligned_cols=24 Identities=25% Similarity=0.342 Sum_probs=20.5
Q ss_pred cEEEEEEecCCCchHHHHHHhhcC
Q 040913 190 LSVVAILDSSGFDKTAFAADTYNN 213 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~~ 213 (425)
..-|.|+|.+|+|||||...+.+.
T Consensus 7 ~~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 7 LFKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHHcC
Confidence 456889999999999999998764
No 328
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=91.65 E-value=0.16 Score=46.57 Aligned_cols=34 Identities=9% Similarity=0.024 Sum_probs=26.3
Q ss_pred HHHHHhcCCCCcEEEEEEecCCCchHHHHHHhhc
Q 040913 179 WFDLLIEGPIGLSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 179 l~~~L~~~~~~~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
+..||....+....|.++|++|.|||++|..+.+
T Consensus 93 l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~ 126 (267)
T 1u0j_A 93 FLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAH 126 (267)
T ss_dssp HHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHh
Confidence 5555555423455689999999999999999887
No 329
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=91.63 E-value=0.11 Score=43.89 Aligned_cols=24 Identities=17% Similarity=0.205 Sum_probs=20.7
Q ss_pred cEEEEEEecCCCchHHHHHHhhcC
Q 040913 190 LSVVAILDSSGFDKTAFAADTYNN 213 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~~ 213 (425)
..-|.|+|.+|+|||||...+.+.
T Consensus 6 ~~ki~~~G~~~~GKSsli~~l~~~ 29 (181)
T 3t5g_A 6 SRKIAILGYRSVGKSSLTIQFVEG 29 (181)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 456889999999999999998854
No 330
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=91.63 E-value=0.095 Score=43.53 Aligned_cols=23 Identities=13% Similarity=0.172 Sum_probs=19.8
Q ss_pred EEEEEEecCCCchHHHHHHhhcC
Q 040913 191 SVVAILDSSGFDKTAFAADTYNN 213 (425)
Q Consensus 191 ~vi~IvG~gGvGKTtLa~~v~~~ 213 (425)
--|.|+|.+|+|||||...+.+.
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 45789999999999999988753
No 331
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=91.62 E-value=0.098 Score=44.01 Aligned_cols=24 Identities=13% Similarity=0.109 Sum_probs=20.3
Q ss_pred cEEEEEEecCCCchHHHHHHhhcC
Q 040913 190 LSVVAILDSSGFDKTAFAADTYNN 213 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~~ 213 (425)
.--|.|+|.+|+|||||...+.+.
T Consensus 6 ~~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 6 QLKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHGG
T ss_pred eEEEEEECcCCCCHHHHHHHHHhC
Confidence 345789999999999999988764
No 332
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=91.61 E-value=0.089 Score=43.59 Aligned_cols=21 Identities=10% Similarity=0.025 Sum_probs=18.6
Q ss_pred EEEEecCCCchHHHHHHhhcC
Q 040913 193 VAILDSSGFDKTAFAADTYNN 213 (425)
Q Consensus 193 i~IvG~gGvGKTtLa~~v~~~ 213 (425)
|.++|.+|+|||||...+.+.
T Consensus 3 i~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 689999999999999988653
No 333
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=91.59 E-value=0.097 Score=45.07 Aligned_cols=23 Identities=17% Similarity=0.102 Sum_probs=20.0
Q ss_pred EEEEEEecCCCchHHHHHHhhcC
Q 040913 191 SVVAILDSSGFDKTAFAADTYNN 213 (425)
Q Consensus 191 ~vi~IvG~gGvGKTtLa~~v~~~ 213 (425)
.-|.++|.+|+|||||...+.+.
T Consensus 24 ~ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 24 GKLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 35789999999999999988763
No 334
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=91.58 E-value=0.11 Score=44.14 Aligned_cols=24 Identities=17% Similarity=0.351 Sum_probs=20.3
Q ss_pred EEEEEEecCCCchHHHHHHhhcCc
Q 040913 191 SVVAILDSSGFDKTAFAADTYNNN 214 (425)
Q Consensus 191 ~vi~IvG~gGvGKTtLa~~v~~~~ 214 (425)
--|.|+|.+|+|||||...+.+..
T Consensus 5 ~ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEEECCCCCCHHHHHHHHHhCC
Confidence 357899999999999999987643
No 335
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=91.58 E-value=0.094 Score=44.93 Aligned_cols=24 Identities=17% Similarity=0.097 Sum_probs=19.8
Q ss_pred cEEEEEEecCCCchHHHHHHhhcC
Q 040913 190 LSVVAILDSSGFDKTAFAADTYNN 213 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~~ 213 (425)
.--|.|+|.+|+|||||...+.+.
T Consensus 20 ~~ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 20 ELKVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 445789999999999999877654
No 336
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=91.57 E-value=0.098 Score=44.41 Aligned_cols=24 Identities=13% Similarity=0.221 Sum_probs=20.6
Q ss_pred cEEEEEEecCCCchHHHHHHhhcC
Q 040913 190 LSVVAILDSSGFDKTAFAADTYNN 213 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~~ 213 (425)
.--|.|+|.+|+|||||...+.+.
T Consensus 10 ~~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 10 LFKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 456889999999999999988764
No 337
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=91.56 E-value=0.094 Score=46.94 Aligned_cols=23 Identities=26% Similarity=0.267 Sum_probs=19.5
Q ss_pred cEEEEEEecCCCchHHHHHHhhc
Q 040913 190 LSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
-.++.|.|.+|+|||||+.++..
T Consensus 23 G~~~~i~G~~GsGKTtl~~~~~~ 45 (247)
T 2dr3_A 23 RNVVLLSGGPGTGKTIFSQQFLW 45 (247)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45889999999999999877653
No 338
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=91.55 E-value=0.097 Score=43.96 Aligned_cols=24 Identities=13% Similarity=0.181 Sum_probs=20.9
Q ss_pred cEEEEEEecCCCchHHHHHHhhcC
Q 040913 190 LSVVAILDSSGFDKTAFAADTYNN 213 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~~ 213 (425)
..-|.|+|.+|+|||||...+.+.
T Consensus 15 ~~~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 15 IFKYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 456889999999999999998764
No 339
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=91.53 E-value=0.098 Score=43.60 Aligned_cols=24 Identities=21% Similarity=0.077 Sum_probs=20.5
Q ss_pred cEEEEEEecCCCchHHHHHHhhcC
Q 040913 190 LSVVAILDSSGFDKTAFAADTYNN 213 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~~ 213 (425)
..-|.|+|.+|+|||||...+.+.
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 456889999999999999998764
No 340
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=91.52 E-value=0.26 Score=55.77 Aligned_cols=23 Identities=22% Similarity=0.196 Sum_probs=20.7
Q ss_pred cEEEEEEecCCCchHHHHHHhhc
Q 040913 190 LSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
-..|+|||..|.|||||++.+..
T Consensus 1105 Ge~vaIVG~SGsGKSTL~~lL~r 1127 (1321)
T 4f4c_A 1105 GQTLALVGPSGCGKSTVVALLER 1127 (1321)
T ss_dssp TCEEEEECSTTSSTTSHHHHHTT
T ss_pred CCEEEEECCCCChHHHHHHHHhc
Confidence 45799999999999999999875
No 341
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=91.51 E-value=0.11 Score=45.66 Aligned_cols=25 Identities=12% Similarity=0.016 Sum_probs=21.5
Q ss_pred CcEEEEEEecCCCchHHHHHHhhcC
Q 040913 189 GLSVVAILDSSGFDKTAFAADTYNN 213 (425)
Q Consensus 189 ~~~vi~IvG~gGvGKTtLa~~v~~~ 213 (425)
....|.++|.+|+|||||...+.+.
T Consensus 11 ~~~~i~~~G~~g~GKTsl~~~l~~~ 35 (218)
T 1nrj_B 11 YQPSIIIAGPQNSGKTSLLTLLTTD 35 (218)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3566889999999999999998774
No 342
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=91.51 E-value=0.11 Score=49.78 Aligned_cols=24 Identities=17% Similarity=0.041 Sum_probs=21.6
Q ss_pred CcEEEEEEecCCCchHHHHHHhhc
Q 040913 189 GLSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 189 ~~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
...+|+|+|.+|+|||||...+..
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~ 96 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGK 96 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHH
Confidence 478999999999999999998875
No 343
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=91.51 E-value=0.11 Score=49.96 Aligned_cols=24 Identities=17% Similarity=0.160 Sum_probs=21.5
Q ss_pred CcEEEEEEecCCCchHHHHHHhhc
Q 040913 189 GLSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 189 ~~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
.-.++.|+|.+|+|||||+.++..
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~ 153 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAV 153 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999999998875
No 344
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=91.50 E-value=0.11 Score=43.94 Aligned_cols=24 Identities=13% Similarity=0.333 Sum_probs=20.7
Q ss_pred cEEEEEEecCCCchHHHHHHhhcC
Q 040913 190 LSVVAILDSSGFDKTAFAADTYNN 213 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~~ 213 (425)
.--|.|+|.+|+|||||...+.+.
T Consensus 18 ~~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 18 TYKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 456789999999999999998864
No 345
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=91.49 E-value=0.088 Score=45.64 Aligned_cols=24 Identities=25% Similarity=0.361 Sum_probs=20.4
Q ss_pred CcEEEEEEecCCCchHHHHHHhhc
Q 040913 189 GLSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 189 ~~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
...-|.|+|.+|+|||||...+.+
T Consensus 22 ~~~ki~vvG~~~vGKSsLi~~l~~ 45 (195)
T 3cbq_A 22 GIFKVMLVGESGVGKSTLAGTFGG 45 (195)
T ss_dssp CEEEEEEECSTTSSHHHHHHHTCC
T ss_pred cEEEEEEECCCCCCHHHHHHHHHh
Confidence 356688999999999999999853
No 346
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=91.49 E-value=0.086 Score=48.21 Aligned_cols=25 Identities=12% Similarity=0.078 Sum_probs=22.2
Q ss_pred CcEEEEEEecCCCchHHHHHHhhcC
Q 040913 189 GLSVVAILDSSGFDKTAFAADTYNN 213 (425)
Q Consensus 189 ~~~vi~IvG~gGvGKTtLa~~v~~~ 213 (425)
....|.|.|..|+||||+++.+.+.
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~~ 47 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQL 47 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHHh
Confidence 3678999999999999999998873
No 347
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=91.48 E-value=0.23 Score=42.27 Aligned_cols=24 Identities=21% Similarity=0.040 Sum_probs=20.9
Q ss_pred cEEEEEEecCCCchHHHHHHhhcC
Q 040913 190 LSVVAILDSSGFDKTAFAADTYNN 213 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~~ 213 (425)
..-|.|+|.+|+|||||...+.+.
T Consensus 16 ~~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 16 EHKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTT
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 566889999999999999998854
No 348
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=91.47 E-value=0.053 Score=53.58 Aligned_cols=24 Identities=21% Similarity=0.385 Sum_probs=20.4
Q ss_pred EEEEecCCCchHHHHHHhhcCccc
Q 040913 193 VAILDSSGFDKTAFAADTYNNNHV 216 (425)
Q Consensus 193 i~IvG~gGvGKTtLa~~v~~~~~~ 216 (425)
++|.|..|+|||+|+.++.+....
T Consensus 154 ~~Ifgg~G~GKt~L~~~Ia~~~~~ 177 (465)
T 3vr4_D 154 LPVFSGSGLPHKELAAQIARQATV 177 (465)
T ss_dssp CCEEECTTSCHHHHHHHHHHHCBC
T ss_pred EEEeCCCCcChHHHHHHHHHHHHh
Confidence 678999999999999998885443
No 349
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=91.47 E-value=0.097 Score=50.30 Aligned_cols=23 Identities=26% Similarity=0.202 Sum_probs=20.3
Q ss_pred cEEEEEEecCCCchHHHHHHhhc
Q 040913 190 LSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
-.+++|+|+.|+|||||.+.+..
T Consensus 41 Ge~~~llGpnGsGKSTLLr~iaG 63 (355)
T 1z47_A 41 GEMVGLLGPSGSGKTTILRLIAG 63 (355)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCCcHHHHHHHHhC
Confidence 45899999999999999998863
No 350
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=91.47 E-value=0.11 Score=48.62 Aligned_cols=23 Identities=22% Similarity=0.394 Sum_probs=19.9
Q ss_pred CcEEEEEEecCCCchHHHHHHhh
Q 040913 189 GLSVVAILDSSGFDKTAFAADTY 211 (425)
Q Consensus 189 ~~~vi~IvG~gGvGKTtLa~~v~ 211 (425)
..++|+|+|-||+||||+|..+.
T Consensus 40 ~~~vI~v~~KGGvGKTT~a~nLA 62 (307)
T 3end_A 40 GAKVFAVYGKGGIGKSTTSSNLS 62 (307)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHH
T ss_pred CceEEEEECCCCccHHHHHHHHH
Confidence 57899999999999999987654
No 351
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=91.45 E-value=0.1 Score=43.76 Aligned_cols=23 Identities=13% Similarity=0.150 Sum_probs=19.7
Q ss_pred EEEEEEecCCCchHHHHHHhhcC
Q 040913 191 SVVAILDSSGFDKTAFAADTYNN 213 (425)
Q Consensus 191 ~vi~IvG~gGvGKTtLa~~v~~~ 213 (425)
--|.|+|..|+|||||...+.+.
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 45789999999999999998753
No 352
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=91.43 E-value=0.56 Score=46.40 Aligned_cols=29 Identities=28% Similarity=0.108 Sum_probs=22.4
Q ss_pred cCCCCcEEEEEEecCCCchHHHHHHhhcC
Q 040913 185 EGPIGLSVVAILDSSGFDKTAFAADTYNN 213 (425)
Q Consensus 185 ~~~~~~~vi~IvG~gGvGKTtLa~~v~~~ 213 (425)
.+=..-.++.|.|.+|+||||||..+..+
T Consensus 195 gGl~~G~l~ii~G~pg~GKT~lal~ia~~ 223 (444)
T 2q6t_A 195 GTLGPGSLNIIAARPAMGKTAFALTIAQN 223 (444)
T ss_dssp CCCCTTCEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCcCCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 33233568889999999999999887653
No 353
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=91.42 E-value=0.19 Score=49.44 Aligned_cols=24 Identities=8% Similarity=0.122 Sum_probs=21.3
Q ss_pred CcEEEEEEecCCCchHHHHHHhhc
Q 040913 189 GLSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 189 ~~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
.-.+++|+|+.|+|||||.+.+..
T Consensus 166 ~ggii~I~GpnGSGKTTlL~allg 189 (418)
T 1p9r_A 166 PHGIILVTGPTGSGKSTTLYAGLQ 189 (418)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHH
T ss_pred cCCeEEEECCCCCCHHHHHHHHHh
Confidence 357899999999999999998865
No 354
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=91.41 E-value=0.091 Score=44.51 Aligned_cols=25 Identities=20% Similarity=0.042 Sum_probs=21.2
Q ss_pred CcEEEEEEecCCCchHHHHHHhhcC
Q 040913 189 GLSVVAILDSSGFDKTAFAADTYNN 213 (425)
Q Consensus 189 ~~~vi~IvG~gGvGKTtLa~~v~~~ 213 (425)
...-|.|+|.+|+|||||...+.+.
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~~ 41 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQIG 41 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCS
T ss_pred CccEEEEECCCCCCHHHHHHHHhcC
Confidence 3566889999999999999998754
No 355
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=91.40 E-value=0.1 Score=44.79 Aligned_cols=24 Identities=25% Similarity=0.275 Sum_probs=20.2
Q ss_pred cEEEEEEecCCCchHHHHHHhhcC
Q 040913 190 LSVVAILDSSGFDKTAFAADTYNN 213 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~~ 213 (425)
.--|.|+|.+|+|||||...+.+.
T Consensus 21 ~~ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 21 EVNLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCcHHHHHHHHHhC
Confidence 345789999999999999888764
No 356
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=91.30 E-value=0.096 Score=50.48 Aligned_cols=23 Identities=22% Similarity=0.211 Sum_probs=20.6
Q ss_pred cEEEEEEecCCCchHHHHHHhhc
Q 040913 190 LSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
...++|+|..|+|||||++.+..
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~g 192 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAA 192 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHH
T ss_pred hCeEEEECCCCCCHHHHHHHHHH
Confidence 46889999999999999998865
No 357
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=91.27 E-value=0.11 Score=44.05 Aligned_cols=23 Identities=13% Similarity=0.153 Sum_probs=19.6
Q ss_pred EEEEEEecCCCchHHHHHHhhcC
Q 040913 191 SVVAILDSSGFDKTAFAADTYNN 213 (425)
Q Consensus 191 ~vi~IvG~gGvGKTtLa~~v~~~ 213 (425)
--|.++|.+|+|||||...+.++
T Consensus 6 ~~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 6 IKCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 35789999999999999888754
No 358
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=91.25 E-value=0.11 Score=44.02 Aligned_cols=24 Identities=25% Similarity=0.367 Sum_probs=20.6
Q ss_pred cEEEEEEecCCCchHHHHHHhhcC
Q 040913 190 LSVVAILDSSGFDKTAFAADTYNN 213 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~~ 213 (425)
..-|.|+|.+|+|||||...+.+.
T Consensus 18 ~~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 18 LHKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHhhC
Confidence 456789999999999999998764
No 359
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=91.24 E-value=0.096 Score=49.12 Aligned_cols=20 Identities=15% Similarity=0.413 Sum_probs=18.3
Q ss_pred EEEEecCCCchHHHHHHhhc
Q 040913 193 VAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 193 i~IvG~gGvGKTtLa~~v~~ 212 (425)
|+|+|..|+|||||.+.++.
T Consensus 21 I~lvG~nG~GKSTLl~~L~g 40 (301)
T 2qnr_A 21 LMVVGESGLGKSTLINSLFL 40 (301)
T ss_dssp EEEEEETTSSHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHhC
Confidence 48999999999999999876
No 360
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=91.20 E-value=0.11 Score=44.98 Aligned_cols=24 Identities=25% Similarity=0.367 Sum_probs=20.7
Q ss_pred cEEEEEEecCCCchHHHHHHhhcC
Q 040913 190 LSVVAILDSSGFDKTAFAADTYNN 213 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~~ 213 (425)
..-|.|+|.+|+|||||...+.+.
T Consensus 14 ~~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 14 LHKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhC
Confidence 456889999999999999988764
No 361
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=91.19 E-value=0.11 Score=50.09 Aligned_cols=23 Identities=30% Similarity=0.186 Sum_probs=20.4
Q ss_pred cEEEEEEecCCCchHHHHHHhhc
Q 040913 190 LSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
-.+++|+|+.|+|||||.+.+..
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaG 51 (359)
T 2yyz_A 29 GEFVALLGPSGCGKTTTLLMLAG 51 (359)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHT
T ss_pred CCEEEEEcCCCchHHHHHHHHHC
Confidence 45899999999999999998864
No 362
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=91.15 E-value=0.11 Score=50.42 Aligned_cols=23 Identities=17% Similarity=0.160 Sum_probs=20.4
Q ss_pred cEEEEEEecCCCchHHHHHHhhc
Q 040913 190 LSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
-.+++|+|+.|.|||||.+.+..
T Consensus 29 Ge~~~llGpsGsGKSTLLr~iaG 51 (381)
T 3rlf_A 29 GEFVVFVGPSGCGKSTLLRMIAG 51 (381)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCEEEEEcCCCchHHHHHHHHHc
Confidence 45899999999999999998864
No 363
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=91.14 E-value=0.11 Score=44.21 Aligned_cols=24 Identities=25% Similarity=0.216 Sum_probs=20.6
Q ss_pred cEEEEEEecCCCchHHHHHHhhcC
Q 040913 190 LSVVAILDSSGFDKTAFAADTYNN 213 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~~ 213 (425)
.--|.|+|.+|+|||||...+.+.
T Consensus 11 ~~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 11 LIKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 456789999999999999998764
No 364
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=91.14 E-value=0.11 Score=43.80 Aligned_cols=23 Identities=13% Similarity=0.105 Sum_probs=19.7
Q ss_pred EEEEEEecCCCchHHHHHHhhcC
Q 040913 191 SVVAILDSSGFDKTAFAADTYNN 213 (425)
Q Consensus 191 ~vi~IvG~gGvGKTtLa~~v~~~ 213 (425)
--|.|+|.+|+|||||...+.+.
T Consensus 9 ~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 9 IKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 34789999999999999988764
No 365
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=91.13 E-value=0.11 Score=44.76 Aligned_cols=23 Identities=4% Similarity=0.111 Sum_probs=19.4
Q ss_pred cEEEEEEecCCCchHHHHHHhhc
Q 040913 190 LSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
..-|.++|.+|+|||||.+.+.+
T Consensus 20 ~~ki~~vG~~~vGKTsLi~~l~~ 42 (196)
T 3llu_A 20 KPRILLMGLRRSGKSSIQKVVFH 42 (196)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 34578999999999999987766
No 366
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=91.13 E-value=0.11 Score=50.09 Aligned_cols=23 Identities=22% Similarity=0.216 Sum_probs=20.3
Q ss_pred cEEEEEEecCCCchHHHHHHhhc
Q 040913 190 LSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
-.+++|+|+.|+|||||.+.+..
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaG 51 (362)
T 2it1_A 29 GEFMALLGPSGSGKSTLLYTIAG 51 (362)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCchHHHHHHHHhc
Confidence 45899999999999999998863
No 367
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=91.13 E-value=0.13 Score=45.10 Aligned_cols=23 Identities=26% Similarity=0.138 Sum_probs=20.2
Q ss_pred cEEEEEEecCCCchHHHHHHhhc
Q 040913 190 LSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
-+.|.|.|+.|+||||||..+..
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~ 56 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQ 56 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHT
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 46688999999999999998865
No 368
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=91.13 E-value=0.11 Score=44.57 Aligned_cols=24 Identities=25% Similarity=0.317 Sum_probs=20.7
Q ss_pred cEEEEEEecCCCchHHHHHHhhcC
Q 040913 190 LSVVAILDSSGFDKTAFAADTYNN 213 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~~ 213 (425)
.--|.|+|..|+|||||...+.+.
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 25 VFKVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 456889999999999999988764
No 369
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=91.09 E-value=0.12 Score=50.50 Aligned_cols=23 Identities=17% Similarity=0.323 Sum_probs=20.2
Q ss_pred cEEEEEEecCCCchHHHHHHhhc
Q 040913 190 LSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
.++|.|.|+.|+||||||..+..
T Consensus 2 ~~~i~i~GptgsGKttla~~La~ 24 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQ 24 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHH
T ss_pred CcEEEEECcchhhHHHHHHHHHH
Confidence 36899999999999999988765
No 370
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=91.08 E-value=0.11 Score=43.73 Aligned_cols=24 Identities=13% Similarity=0.213 Sum_probs=20.4
Q ss_pred cEEEEEEecCCCchHHHHHHhhcC
Q 040913 190 LSVVAILDSSGFDKTAFAADTYNN 213 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~~ 213 (425)
..-|.|+|.+|+|||||...+...
T Consensus 12 ~~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 12 NAKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 345789999999999999988764
No 371
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=91.07 E-value=0.11 Score=50.26 Aligned_cols=110 Identities=15% Similarity=0.173 Sum_probs=57.9
Q ss_pred CcEEEEEEecCCCchHHHHHHhhcCccccccccchHHHHHHHHHHhCCCCCCC--cc--CCCCHHHHHHHHHHHhcCCeE
Q 040913 189 GLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWILDDIIRSLMPPSRVT--VI--IGEDYKLKKSILRDFLTNKKY 264 (425)
Q Consensus 189 ~~~vi~IvG~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~~il~~l~~~~~~~--~~--~~~~~~~l~~~l~~~l~~kr~ 264 (425)
.-.+++|+|+.|+|||||++.+..-.... ....+.+..+-. .+....... .. ...+...+...+...|....-
T Consensus 135 ~g~~i~ivG~~GsGKTTll~~l~~~~~~~--~~g~I~~~e~~~-e~~~~~~~~~v~Q~~~g~~~~~~~~~l~~~L~~~pd 211 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTIASMIDYINQT--KSYHIITIEDPI-EYVFKHKKSIVNQREVGEDTKSFADALRAALREDPD 211 (372)
T ss_dssp SSEEEEEECSSSSSHHHHHHHHHHHHHHH--SCCEEEEEESSC-CSCCCCSSSEEEEEEBTTTBSCSHHHHHHHTTSCCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcCcC--CCcEEEEecccH-hhhhccCceEEEeeecCCCHHHHHHHHHHHhhhCcC
Confidence 35789999999999999998876521100 000000000000 000000000 00 000112334567777777777
Q ss_pred EEEecccCCChhhHHHHHhhCCCCCCCcEEEEecCChhHHH
Q 040913 265 FIALDDVCHNIEIWDDLEEVLPDNQNGSRVLITVINPSLLT 305 (425)
Q Consensus 265 LlVLDdvw~~~~~~~~l~~~l~~~~~gskIivTTR~~~va~ 305 (425)
+|++|.+. +.+......... ..|..|+.|+...++..
T Consensus 212 ~illdE~~-d~e~~~~~l~~~---~~g~~vi~t~H~~~~~~ 248 (372)
T 2ewv_A 212 VIFVGEMR-DLETVETALRAA---ETGHLVFGTLHTNTAID 248 (372)
T ss_dssp EEEESCCC-SHHHHHHHHHHH---TTTCEEEECCCCCSHHH
T ss_pred EEEECCCC-CHHHHHHHHHHH---hcCCEEEEEECcchHHH
Confidence 89999997 665544432222 23667888888876544
No 372
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=91.06 E-value=0.086 Score=44.49 Aligned_cols=23 Identities=9% Similarity=0.117 Sum_probs=19.8
Q ss_pred EEEEEEecCCCchHHHHHHhhcC
Q 040913 191 SVVAILDSSGFDKTAFAADTYNN 213 (425)
Q Consensus 191 ~vi~IvG~gGvGKTtLa~~v~~~ 213 (425)
--|.++|.+|+|||||...+.+.
T Consensus 8 ~ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 8 LRLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEEECCGGGCHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 45789999999999999988764
No 373
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=91.04 E-value=0.12 Score=43.90 Aligned_cols=25 Identities=12% Similarity=0.042 Sum_probs=21.6
Q ss_pred cEEEEEEecCCCchHHHHHHhhcCc
Q 040913 190 LSVVAILDSSGFDKTAFAADTYNNN 214 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~~~ 214 (425)
..-|.|+|.+|+|||||...+.+..
T Consensus 18 ~~~i~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 18 ELRLLMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp CEEEEEECSTTSSHHHHHHHHTTCC
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCC
Confidence 5568899999999999999988754
No 374
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=91.02 E-value=0.11 Score=50.20 Aligned_cols=23 Identities=22% Similarity=0.133 Sum_probs=20.2
Q ss_pred cEEEEEEecCCCchHHHHHHhhc
Q 040913 190 LSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
-.+++|+|+.|+|||||.+.+..
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaG 51 (372)
T 1g29_1 29 GEFMILLGPSGCGKTTTLRMIAG 51 (372)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCcHHHHHHHHHHc
Confidence 35899999999999999998863
No 375
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=91.02 E-value=0.13 Score=46.97 Aligned_cols=21 Identities=24% Similarity=0.302 Sum_probs=18.0
Q ss_pred EEEEEEecCCCchHHHHHHhh
Q 040913 191 SVVAILDSSGFDKTAFAADTY 211 (425)
Q Consensus 191 ~vi~IvG~gGvGKTtLa~~v~ 211 (425)
++|+|.|-||+||||+|..+.
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA 22 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLT 22 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHH
T ss_pred cEEEEecCCCCcHHHHHHHHH
Confidence 578889999999999986655
No 376
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=90.97 E-value=0.091 Score=54.24 Aligned_cols=22 Identities=14% Similarity=0.117 Sum_probs=19.7
Q ss_pred EEEEEecCCCchHHHHHHhhcC
Q 040913 192 VVAILDSSGFDKTAFAADTYNN 213 (425)
Q Consensus 192 vi~IvG~gGvGKTtLa~~v~~~ 213 (425)
-|.++|++|+|||+||+.+.+.
T Consensus 329 ~vLL~GppGtGKT~LAr~la~~ 350 (595)
T 3f9v_A 329 HILIIGDPGTAKSQMLQFISRV 350 (595)
T ss_dssp CEEEEESSCCTHHHHHHSSSTT
T ss_pred ceEEECCCchHHHHHHHHHHHh
Confidence 4778999999999999999873
No 377
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=90.96 E-value=0.12 Score=43.53 Aligned_cols=24 Identities=21% Similarity=0.228 Sum_probs=20.5
Q ss_pred cEEEEEEecCCCchHHHHHHhhcC
Q 040913 190 LSVVAILDSSGFDKTAFAADTYNN 213 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~~ 213 (425)
.--|.++|.+|+|||||...+.+.
T Consensus 10 ~~~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 10 AFKVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHhC
Confidence 456789999999999999998764
No 378
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=90.95 E-value=0.12 Score=44.39 Aligned_cols=24 Identities=17% Similarity=0.275 Sum_probs=20.6
Q ss_pred cEEEEEEecCCCchHHHHHHhhcC
Q 040913 190 LSVVAILDSSGFDKTAFAADTYNN 213 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~~ 213 (425)
.--|.|+|..|+|||||...+.+.
T Consensus 23 ~~ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 23 ELKVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 456889999999999999998764
No 379
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=90.94 E-value=0.13 Score=44.40 Aligned_cols=24 Identities=8% Similarity=-0.047 Sum_probs=20.6
Q ss_pred cEEEEEEecCCCchHHHHHHhhcC
Q 040913 190 LSVVAILDSSGFDKTAFAADTYNN 213 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~~ 213 (425)
..-|.|+|.+|+|||||...+.+.
T Consensus 29 ~~ki~v~G~~~vGKSsLi~~l~~~ 52 (192)
T 2b6h_A 29 QMRILMVGLDAAGKTTILYKLKLG 52 (192)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCSS
T ss_pred ccEEEEECCCCCCHHHHHHHHHhC
Confidence 455889999999999999998754
No 380
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=90.93 E-value=0.12 Score=50.09 Aligned_cols=23 Identities=22% Similarity=0.148 Sum_probs=20.4
Q ss_pred cEEEEEEecCCCchHHHHHHhhc
Q 040913 190 LSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
-.+++|+|+.|+|||||.+.+..
T Consensus 37 Ge~~~llGpnGsGKSTLLr~iaG 59 (372)
T 1v43_A 37 GEFLVLLGPSGCGKTTTLRMIAG 59 (372)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCChHHHHHHHHHc
Confidence 45899999999999999999864
No 381
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=90.92 E-value=0.14 Score=44.22 Aligned_cols=25 Identities=36% Similarity=0.367 Sum_probs=21.2
Q ss_pred CcEEEEEEecCCCchHHHHHHhhcC
Q 040913 189 GLSVVAILDSSGFDKTAFAADTYNN 213 (425)
Q Consensus 189 ~~~vi~IvG~gGvGKTtLa~~v~~~ 213 (425)
...-|.|+|.+|+|||||...+.+.
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 7 VLLKVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHHcC
Confidence 3556889999999999999988764
No 382
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=90.85 E-value=0.24 Score=42.22 Aligned_cols=25 Identities=16% Similarity=-0.044 Sum_probs=21.1
Q ss_pred CcEEEEEEecCCCchHHHHHHhhcC
Q 040913 189 GLSVVAILDSSGFDKTAFAADTYNN 213 (425)
Q Consensus 189 ~~~vi~IvG~gGvGKTtLa~~v~~~ 213 (425)
...-|.|+|.+|+|||||...+.++
T Consensus 21 ~~~~i~v~G~~~~GKssli~~l~~~ 45 (189)
T 2x77_A 21 RKIRVLMLGLDNAGKTSILYRLHLG 45 (189)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCS
T ss_pred CceEEEEECCCCCCHHHHHHHHHcC
Confidence 3456889999999999999998654
No 383
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=90.85 E-value=0.13 Score=44.50 Aligned_cols=24 Identities=21% Similarity=0.295 Sum_probs=20.6
Q ss_pred cEEEEEEecCCCchHHHHHHhhcC
Q 040913 190 LSVVAILDSSGFDKTAFAADTYNN 213 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~~ 213 (425)
.--|.|+|.+|+|||||...+.+.
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 8 MFKILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTC
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 456889999999999999998764
No 384
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=90.83 E-value=0.13 Score=44.63 Aligned_cols=24 Identities=25% Similarity=0.212 Sum_probs=20.9
Q ss_pred cEEEEEEecCCCchHHHHHHhhcC
Q 040913 190 LSVVAILDSSGFDKTAFAADTYNN 213 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~~ 213 (425)
..-|.|+|.+|+|||||...+.+.
T Consensus 24 ~~ki~vvG~~~~GKSsli~~l~~~ 47 (201)
T 3oes_A 24 YRKVVILGYRCVGKTSLAHQFVEG 47 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred cEEEEEECCCCcCHHHHHHHHHhC
Confidence 456889999999999999998864
No 385
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=90.82 E-value=0.13 Score=45.07 Aligned_cols=24 Identities=17% Similarity=0.131 Sum_probs=20.7
Q ss_pred cEEEEEEecCCCchHHHHHHhhcC
Q 040913 190 LSVVAILDSSGFDKTAFAADTYNN 213 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~~ 213 (425)
..-|.|+|.+|+|||||...+.+.
T Consensus 28 ~~ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 28 KCKIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 456789999999999999998764
No 386
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=90.80 E-value=0.12 Score=49.52 Aligned_cols=24 Identities=21% Similarity=0.268 Sum_probs=21.5
Q ss_pred cEEEEEEecCCCchHHHHHHhhcC
Q 040913 190 LSVVAILDSSGFDKTAFAADTYNN 213 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~~ 213 (425)
-.+++|+|..|+|||||.+.+.+.
T Consensus 71 Gq~~gIiG~nGaGKTTLl~~I~g~ 94 (347)
T 2obl_A 71 GQRIGIFAGSGVGKSTLLGMICNG 94 (347)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 458999999999999999999874
No 387
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=90.78 E-value=0.16 Score=43.61 Aligned_cols=26 Identities=12% Similarity=-0.018 Sum_probs=22.3
Q ss_pred CcEEEEEEecCCCchHHHHHHhhcCc
Q 040913 189 GLSVVAILDSSGFDKTAFAADTYNNN 214 (425)
Q Consensus 189 ~~~vi~IvG~gGvGKTtLa~~v~~~~ 214 (425)
...-|.|+|.+|+|||||...+.+..
T Consensus 16 ~~~ki~v~G~~~~GKSsl~~~l~~~~ 41 (199)
T 4bas_A 16 TKLQVVMCGLDNSGKTTIINQVKPAQ 41 (199)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHSCCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 46778999999999999999988753
No 388
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=90.77 E-value=0.13 Score=44.41 Aligned_cols=24 Identities=21% Similarity=0.288 Sum_probs=20.5
Q ss_pred cEEEEEEecCCCchHHHHHHhhcC
Q 040913 190 LSVVAILDSSGFDKTAFAADTYNN 213 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~~ 213 (425)
.--|.|+|.+|+|||||...+.+.
T Consensus 28 ~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 28 EVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 445789999999999999988764
No 389
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=90.74 E-value=0.18 Score=44.77 Aligned_cols=25 Identities=8% Similarity=0.108 Sum_probs=21.7
Q ss_pred CcEEEEEEecCCCchHHHHHHhhcC
Q 040913 189 GLSVVAILDSSGFDKTAFAADTYNN 213 (425)
Q Consensus 189 ~~~vi~IvG~gGvGKTtLa~~v~~~ 213 (425)
...-|.|+|.+|+|||||...+.+.
T Consensus 28 ~~~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 28 HKKTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp TSEEEEEECSTTSSHHHHHHHHTTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3567889999999999999998774
No 390
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=90.74 E-value=0.084 Score=56.58 Aligned_cols=51 Identities=22% Similarity=0.142 Sum_probs=38.8
Q ss_pred CCCCCCCcccchhhHHHHHHHHhcC-----------CCCcEEEEEEecCCCchHHHHHHhhc
Q 040913 162 EGQPRLDISEFERAREEWFDLLIEG-----------PIGLSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 162 ~~~~~~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
+...-.++.|.+..++.|.+.+... -.....+.++|++|+||||||+.+.+
T Consensus 472 ~~v~~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~ 533 (806)
T 1ypw_A 472 PQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIAN 533 (806)
T ss_dssp CCCSSCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHH
T ss_pred ccccccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHH
Confidence 3444567889999988888776532 01345678999999999999999988
No 391
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=90.73 E-value=0.1 Score=45.98 Aligned_cols=22 Identities=14% Similarity=0.107 Sum_probs=20.0
Q ss_pred EEEEEEecCCCchHHHHHHhhc
Q 040913 191 SVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 191 ~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
.+|.|.|+.|+||||+++.+..
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~ 25 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVAS 25 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999998876
No 392
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=90.72 E-value=0.18 Score=43.95 Aligned_cols=24 Identities=13% Similarity=0.130 Sum_probs=20.1
Q ss_pred cEEEEEEecCCCchHHHHHHhhcC
Q 040913 190 LSVVAILDSSGFDKTAFAADTYNN 213 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~~ 213 (425)
.--|.|+|.+|+|||||...+.++
T Consensus 30 ~~ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 30 AIKCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHHhC
Confidence 445789999999999999888764
No 393
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=90.71 E-value=0.13 Score=44.13 Aligned_cols=24 Identities=13% Similarity=0.134 Sum_probs=20.6
Q ss_pred cEEEEEEecCCCchHHHHHHhhcC
Q 040913 190 LSVVAILDSSGFDKTAFAADTYNN 213 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~~ 213 (425)
.--|.|+|.+|+|||||...+.+.
T Consensus 7 ~~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 7 SYKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 345789999999999999998875
No 394
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=90.70 E-value=0.11 Score=50.16 Aligned_cols=23 Identities=17% Similarity=0.252 Sum_probs=20.6
Q ss_pred cEEEEEEecCCCchHHHHHHhhc
Q 040913 190 LSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
-.+++|+|+.|+|||||++.+..
T Consensus 175 G~~i~ivG~sGsGKSTll~~l~~ 197 (361)
T 2gza_A 175 ERVIVVAGETGSGKTTLMKALMQ 197 (361)
T ss_dssp TCCEEEEESSSSCHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 35799999999999999999876
No 395
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=90.69 E-value=0.14 Score=47.97 Aligned_cols=25 Identities=12% Similarity=0.179 Sum_probs=21.9
Q ss_pred CcEEEEEEecCCCchHHHHHHhhcC
Q 040913 189 GLSVVAILDSSGFDKTAFAADTYNN 213 (425)
Q Consensus 189 ~~~vi~IvG~gGvGKTtLa~~v~~~ 213 (425)
....|+|+|.+|+|||||...+...
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~ 31 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQ 31 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCC
Confidence 3568999999999999999998764
No 396
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=90.66 E-value=0.15 Score=44.58 Aligned_cols=24 Identities=13% Similarity=0.036 Sum_probs=20.2
Q ss_pred cEEEEEEecCCCchHHHHHHhhcC
Q 040913 190 LSVVAILDSSGFDKTAFAADTYNN 213 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~~ 213 (425)
...|.|+|.+|+|||||...+.+.
T Consensus 7 ~~ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 7 QRAVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp -CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 446789999999999999998764
No 397
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=90.65 E-value=0.16 Score=47.73 Aligned_cols=26 Identities=15% Similarity=0.295 Sum_probs=23.0
Q ss_pred CCcEEEEEEecCCCchHHHHHHhhcC
Q 040913 188 IGLSVVAILDSSGFDKTAFAADTYNN 213 (425)
Q Consensus 188 ~~~~vi~IvG~gGvGKTtLa~~v~~~ 213 (425)
.....|+|+|.+|+|||||...+...
T Consensus 8 ~~~g~v~ivG~~nvGKSTLin~l~g~ 33 (308)
T 3iev_A 8 MKVGYVAIVGKPNVGKSTLLNNLLGT 33 (308)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 45789999999999999999998764
No 398
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=90.63 E-value=0.15 Score=47.15 Aligned_cols=22 Identities=18% Similarity=0.291 Sum_probs=18.8
Q ss_pred cEEEEEEecCCCchHHHHHHhh
Q 040913 190 LSVVAILDSSGFDKTAFAADTY 211 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~ 211 (425)
.++|+|.|-||+||||+|..+.
T Consensus 2 MkvIavs~KGGvGKTT~a~nLA 23 (289)
T 2afh_E 2 MRQCAIYGKGGIGKSTTTQNLV 23 (289)
T ss_dssp CEEEEEEECTTSSHHHHHHHHH
T ss_pred ceEEEEeCCCcCcHHHHHHHHH
Confidence 4688899999999999987665
No 399
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=90.60 E-value=0.13 Score=44.35 Aligned_cols=24 Identities=13% Similarity=0.131 Sum_probs=20.1
Q ss_pred cEEEEEEecCCCchHHHHHHhhcC
Q 040913 190 LSVVAILDSSGFDKTAFAADTYNN 213 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~~ 213 (425)
.--|.|+|.+|+|||||...+.+.
T Consensus 20 ~~ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 20 GVKCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHC-
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 455789999999999999988764
No 400
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=90.58 E-value=0.14 Score=44.43 Aligned_cols=24 Identities=21% Similarity=0.281 Sum_probs=20.2
Q ss_pred cEEEEEEecCCCchHHHHHHhhcC
Q 040913 190 LSVVAILDSSGFDKTAFAADTYNN 213 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~~ 213 (425)
.--|.|+|.+|+|||||...+.+.
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 25 LFKFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHC-
T ss_pred ceEEEEECcCCCCHHHHHHHHHhC
Confidence 456789999999999999988764
No 401
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=90.57 E-value=0.13 Score=43.86 Aligned_cols=24 Identities=17% Similarity=0.260 Sum_probs=20.7
Q ss_pred cEEEEEEecCCCchHHHHHHhhcC
Q 040913 190 LSVVAILDSSGFDKTAFAADTYNN 213 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~~ 213 (425)
.--|.|+|.+|+|||||...+.+.
T Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 22 MFKLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHHcC
Confidence 456889999999999999998764
No 402
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=90.56 E-value=0.21 Score=42.63 Aligned_cols=25 Identities=16% Similarity=0.212 Sum_probs=21.3
Q ss_pred CcEEEEEEecCCCchHHHHHHhhcC
Q 040913 189 GLSVVAILDSSGFDKTAFAADTYNN 213 (425)
Q Consensus 189 ~~~vi~IvG~gGvGKTtLa~~v~~~ 213 (425)
..--|.|+|..|+|||||...+.+.
T Consensus 15 ~~~ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 15 YLFKLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHHcC
Confidence 3456889999999999999998864
No 403
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=90.56 E-value=0.14 Score=43.90 Aligned_cols=24 Identities=13% Similarity=0.018 Sum_probs=20.4
Q ss_pred cEEEEEEecCCCchHHHHHHhhcC
Q 040913 190 LSVVAILDSSGFDKTAFAADTYNN 213 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~~ 213 (425)
.--|.|+|.+|+|||||...+.+.
T Consensus 22 ~~ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 22 EMELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHHcC
Confidence 345789999999999999998764
No 404
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=90.55 E-value=0.14 Score=44.06 Aligned_cols=24 Identities=8% Similarity=0.105 Sum_probs=20.7
Q ss_pred cEEEEEEecCCCchHHHHHHhhcC
Q 040913 190 LSVVAILDSSGFDKTAFAADTYNN 213 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~~ 213 (425)
.--|.++|.+|+|||||...+.+.
T Consensus 23 ~~ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 23 ALKIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eeEEEEECcCCCCHHHHHHHHhcC
Confidence 445789999999999999998874
No 405
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=90.54 E-value=0.097 Score=50.17 Aligned_cols=23 Identities=26% Similarity=0.193 Sum_probs=20.4
Q ss_pred cEEEEEEecCCCchHHHHHHhhc
Q 040913 190 LSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
-.+++|+|+.|+|||||.+.+..
T Consensus 26 Ge~~~llGpnGsGKSTLLr~iaG 48 (348)
T 3d31_A 26 GEYFVILGPTGAGKTLFLELIAG 48 (348)
T ss_dssp TCEEEEECCCTHHHHHHHHHHHT
T ss_pred CCEEEEECCCCccHHHHHHHHHc
Confidence 45899999999999999999874
No 406
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=90.53 E-value=0.12 Score=49.14 Aligned_cols=104 Identities=14% Similarity=0.080 Sum_probs=54.6
Q ss_pred EEEEEEecCCCchHHHHHHhhcCccccccccchHHHHHHHHHHhCCC-CCCC-ccCCCCHHHHHHHHHHHhcCCeEEEEe
Q 040913 191 SVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWILDDIIRSLMPP-SRVT-VIIGEDYKLKKSILRDFLTNKKYFIAL 268 (425)
Q Consensus 191 ~vi~IvG~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~~il~~l~~~-~~~~-~~~~~~~~~l~~~l~~~l~~kr~LlVL 268 (425)
.+++|+|..|+|||||++.+..-..... ..+.+ .+. ..+... .... .............+...|..+.-+|+|
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~~~~~~---g~i~i-~~~-~e~~~~~~~~~i~~~~ggg~~~r~~la~aL~~~p~ilil 246 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEFIPKEE---RIISI-EDT-EEIVFKHHKNYTQLFFGGNITSADCLKSCLRMRPDRIIL 246 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGGSCTTS---CEEEE-ESS-CCCCCSSCSSEEEEECBTTBCHHHHHHHHTTSCCSEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcCCC---cEEEE-CCe-eccccccchhEEEEEeCCChhHHHHHHHHhhhCCCEEEE
Confidence 4789999999999999999886321111 01110 000 000000 0000 000001223445666777778889999
Q ss_pred cccCCChhhHHHHHhhCCCCCCCcEEEEecCChhH
Q 040913 269 DDVCHNIEIWDDLEEVLPDNQNGSRVLITVINPSL 303 (425)
Q Consensus 269 Ddvw~~~~~~~~l~~~l~~~~~gskIivTTR~~~v 303 (425)
|.+. +.+.++.+... ..+ +..+|+||...+.
T Consensus 247 dE~~-~~e~~~~l~~~-~~g--~~tvi~t~H~~~~ 277 (330)
T 2pt7_A 247 GELR-SSEAYDFYNVL-CSG--HKGTLTTLHAGSS 277 (330)
T ss_dssp CCCC-STHHHHHHHHH-HTT--CCCEEEEEECSSH
T ss_pred cCCC-hHHHHHHHHHH-hcC--CCEEEEEEcccHH
Confidence 9998 76666655443 221 2236666665553
No 407
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=90.52 E-value=0.13 Score=44.14 Aligned_cols=24 Identities=13% Similarity=0.188 Sum_probs=20.4
Q ss_pred cEEEEEEecCCCchHHHHHHhhcC
Q 040913 190 LSVVAILDSSGFDKTAFAADTYNN 213 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~~ 213 (425)
..-|.|+|.+|+|||||...+.+.
T Consensus 8 ~~ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 8 DYRVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCcHHHHHHHHHcC
Confidence 456789999999999999998763
No 408
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=90.52 E-value=0.13 Score=44.31 Aligned_cols=23 Identities=17% Similarity=0.206 Sum_probs=19.5
Q ss_pred cEEEEEEecCCCchHHHHHHhhc
Q 040913 190 LSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
..-|.|+|.+|+|||||...+..
T Consensus 6 ~~kv~lvG~~~vGKSsL~~~~~~ 28 (192)
T 2cjw_A 6 YYRVVLIGEQGVGKSTLANIFAG 28 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHhc
Confidence 34588999999999999988764
No 409
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=90.51 E-value=0.13 Score=44.04 Aligned_cols=24 Identities=21% Similarity=0.277 Sum_probs=20.3
Q ss_pred cEEEEEEecCCCchHHHHHHhhcC
Q 040913 190 LSVVAILDSSGFDKTAFAADTYNN 213 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~~ 213 (425)
.--|.|+|.+|+|||||...+.+.
T Consensus 23 ~~ki~v~G~~~~GKSsli~~l~~~ 46 (191)
T 3dz8_A 23 MFKLLIIGNSSVGKTSFLFRYADD 46 (191)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred eeEEEEECCCCcCHHHHHHHHhcC
Confidence 445789999999999999988764
No 410
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=90.48 E-value=0.13 Score=44.82 Aligned_cols=24 Identities=17% Similarity=0.302 Sum_probs=20.5
Q ss_pred cEEEEEEecCCCchHHHHHHhhcC
Q 040913 190 LSVVAILDSSGFDKTAFAADTYNN 213 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~~ 213 (425)
..-|.|+|.+|+|||||...+.+.
T Consensus 26 ~~ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 26 LFKIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHhC
Confidence 456889999999999999987753
No 411
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=90.47 E-value=0.14 Score=43.89 Aligned_cols=25 Identities=20% Similarity=0.037 Sum_probs=21.1
Q ss_pred cEEEEEEecCCCchHHHHHHhhcCc
Q 040913 190 LSVVAILDSSGFDKTAFAADTYNNN 214 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~~~ 214 (425)
.--|.|+|..|+|||||...+.+..
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 21 EVHVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp CEEEEEEECTTSSHHHHHHHTSCGG
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCC
Confidence 3457899999999999999988754
No 412
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=90.46 E-value=0.14 Score=43.94 Aligned_cols=24 Identities=17% Similarity=0.250 Sum_probs=20.3
Q ss_pred cEEEEEEecCCCchHHHHHHhhcC
Q 040913 190 LSVVAILDSSGFDKTAFAADTYNN 213 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~~ 213 (425)
.--|.|+|.+|+|||||...+.+.
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 21 LFKYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 345789999999999999988764
No 413
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=90.46 E-value=0.13 Score=44.15 Aligned_cols=24 Identities=25% Similarity=0.289 Sum_probs=20.1
Q ss_pred cEEEEEEecCCCchHHHHHHhhcC
Q 040913 190 LSVVAILDSSGFDKTAFAADTYNN 213 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~~ 213 (425)
.--|.|+|..|+|||||...+.+.
T Consensus 26 ~~ki~vvG~~~~GKSsLi~~l~~~ 49 (192)
T 2il1_A 26 KLQVIIIGSRGVGKTSLMERFTDD 49 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHCC-
T ss_pred ceEEEEECCCCCCHHHHHHHHhcC
Confidence 345789999999999999998764
No 414
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=90.40 E-value=0.14 Score=43.36 Aligned_cols=24 Identities=21% Similarity=0.040 Sum_probs=20.6
Q ss_pred cEEEEEEecCCCchHHHHHHhhcC
Q 040913 190 LSVVAILDSSGFDKTAFAADTYNN 213 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~~ 213 (425)
..-|.|+|..|+|||||...+.+.
T Consensus 21 ~~~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 21 EHKVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp CEEEEEEEETTSSHHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 446789999999999999998764
No 415
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=90.40 E-value=0.19 Score=50.72 Aligned_cols=44 Identities=5% Similarity=-0.069 Sum_probs=29.2
Q ss_pred cccchhhHHHHHHHHhcCCCCcEEEEEEecCCCchHHHHHHhhc
Q 040913 169 ISEFERAREEWFDLLIEGPIGLSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 169 ~vGr~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
-+.+.+..+.+.+.......+..+|.+.|+.|+||||+|+.+..
T Consensus 374 ~f~rpeV~~vLr~~~~~~~~~~~~I~l~GlsGsGKSTIa~~La~ 417 (511)
T 1g8f_A 374 WFSYPEVVKILRESNPPRPKQGFSIVLGNSLTVSREQLSIALLS 417 (511)
T ss_dssp TTSCHHHHHHHHHHSCCGGGCCEEEEECTTCCSCHHHHHHHHHH
T ss_pred cccChhhHHHHHHhcccccccceEEEecccCCCCHHHHHHHHHH
Confidence 33444443444443322223457899999999999999999887
No 416
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=90.38 E-value=0.14 Score=49.77 Aligned_cols=23 Identities=17% Similarity=0.216 Sum_probs=20.5
Q ss_pred cEEEEEEecCCCchHHHHHHhhc
Q 040913 190 LSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
-.+++|+|+.|+|||||.+.+..
T Consensus 47 Ge~~~llGpsGsGKSTLLr~iaG 69 (390)
T 3gd7_A 47 GQRVGLLGRTGSGKSTLLSAFLR 69 (390)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCChHHHHHHHHhC
Confidence 45899999999999999999874
No 417
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=90.37 E-value=0.15 Score=44.67 Aligned_cols=29 Identities=17% Similarity=0.103 Sum_probs=23.7
Q ss_pred cEEEEEEecCCCchHHHHHHhhcCccccccc
Q 040913 190 LSVVAILDSSGFDKTAFAADTYNNNHVKFYF 220 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~~~~~~~~F 220 (425)
..+|+|.|+.|+||||+++.+.. +..-.|
T Consensus 6 ~~iI~i~g~~GsGk~ti~~~la~--~lg~~~ 34 (201)
T 3fdi_A 6 QIIIAIGREFGSGGHLVAKKLAE--HYNIPL 34 (201)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH--HTTCCE
T ss_pred CeEEEEeCCCCCCHHHHHHHHHH--HhCcCE
Confidence 35899999999999999999988 444333
No 418
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=90.37 E-value=0.14 Score=43.68 Aligned_cols=24 Identities=13% Similarity=0.191 Sum_probs=20.5
Q ss_pred cEEEEEEecCCCchHHHHHHhhcC
Q 040913 190 LSVVAILDSSGFDKTAFAADTYNN 213 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~~ 213 (425)
..-|.|+|..|+|||||...+.+.
T Consensus 20 ~~ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 20 IFKIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHcC
Confidence 456889999999999999998754
No 419
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=90.35 E-value=0.15 Score=44.31 Aligned_cols=24 Identities=17% Similarity=0.286 Sum_probs=20.6
Q ss_pred cEEEEEEecCCCchHHHHHHhhcC
Q 040913 190 LSVVAILDSSGFDKTAFAADTYNN 213 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~~ 213 (425)
..-|.|+|.+|+|||||...+.+.
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 8 LFKLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHhcC
Confidence 456889999999999999998764
No 420
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=90.34 E-value=0.15 Score=43.63 Aligned_cols=24 Identities=17% Similarity=0.256 Sum_probs=20.5
Q ss_pred cEEEEEEecCCCchHHHHHHhhcC
Q 040913 190 LSVVAILDSSGFDKTAFAADTYNN 213 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~~ 213 (425)
.--|.|+|.+|+|||||...+.+.
T Consensus 15 ~~~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 15 TLKILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 346789999999999999998764
No 421
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=90.29 E-value=0.14 Score=44.20 Aligned_cols=24 Identities=13% Similarity=0.221 Sum_probs=20.8
Q ss_pred cEEEEEEecCCCchHHHHHHhhcC
Q 040913 190 LSVVAILDSSGFDKTAFAADTYNN 213 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~~ 213 (425)
..-|.|+|.+|+|||||...+.+.
T Consensus 28 ~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 28 AYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred CeEEEEECcCCCCHHHHHHHHHhC
Confidence 456889999999999999998764
No 422
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=90.22 E-value=0.15 Score=44.72 Aligned_cols=24 Identities=17% Similarity=0.174 Sum_probs=20.1
Q ss_pred cEEEEEEecCCCchHHHHHHhhcC
Q 040913 190 LSVVAILDSSGFDKTAFAADTYNN 213 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~~ 213 (425)
.--|.|+|.+|+|||||...+.+.
T Consensus 34 ~~ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 34 SVKVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHC-
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 456789999999999999998764
No 423
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=90.18 E-value=0.14 Score=50.39 Aligned_cols=20 Identities=15% Similarity=0.451 Sum_probs=18.9
Q ss_pred EEEEecCCCchHHHHHHhhc
Q 040913 193 VAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 193 i~IvG~gGvGKTtLa~~v~~ 212 (425)
++|+|..|+|||||.+.++.
T Consensus 45 vaLvG~nGaGKSTLln~L~G 64 (427)
T 2qag_B 45 ILCVGETGLGKSTLMDTLFN 64 (427)
T ss_dssp EEEECSTTSSSHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHhC
Confidence 99999999999999999876
No 424
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=90.14 E-value=0.16 Score=44.29 Aligned_cols=24 Identities=8% Similarity=0.086 Sum_probs=20.6
Q ss_pred cEEEEEEecCCCchHHHHHHhhcC
Q 040913 190 LSVVAILDSSGFDKTAFAADTYNN 213 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~~ 213 (425)
..-|.|+|.+|+|||||...+.+.
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~ 48 (207)
T 2fv8_A 25 RKKLVVVGDGACGKTCLLIVFSKD 48 (207)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHhcC
Confidence 346889999999999999988764
No 425
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=90.12 E-value=0.17 Score=49.80 Aligned_cols=23 Identities=22% Similarity=0.078 Sum_probs=20.3
Q ss_pred cEEEEEEecCCCchHHHHHHhhc
Q 040913 190 LSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
..+|.++|.+|+||||++..+..
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~LA~ 120 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKLAL 120 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 67999999999999999887764
No 426
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=90.09 E-value=0.057 Score=58.56 Aligned_cols=21 Identities=14% Similarity=0.037 Sum_probs=19.6
Q ss_pred cEEEEEEecCCCchHHHHHHh
Q 040913 190 LSVVAILDSSGFDKTAFAADT 210 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v 210 (425)
-.+++|+|+.|.||||+.+.+
T Consensus 662 g~i~~ItGpNGsGKSTlLr~i 682 (934)
T 3thx_A 662 QMFHIITGPNMGGKSTYIRQT 682 (934)
T ss_dssp BCEEEEECCTTSSHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHH
Confidence 578999999999999999988
No 427
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=90.08 E-value=0.089 Score=50.55 Aligned_cols=23 Identities=30% Similarity=0.224 Sum_probs=20.3
Q ss_pred cEEEEEEecCCCchHHHHHHhhc
Q 040913 190 LSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
-.+++|+|+.|+|||||.+.+..
T Consensus 31 Ge~~~llGpnGsGKSTLLr~iaG 53 (353)
T 1oxx_K 31 GERFGILGPSGAGKTTFMRIIAG 53 (353)
T ss_dssp TCEEEEECSCHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCcHHHHHHHHhC
Confidence 45899999999999999998863
No 428
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=90.08 E-value=0.22 Score=43.66 Aligned_cols=24 Identities=8% Similarity=-0.103 Sum_probs=21.3
Q ss_pred CcEEEEEEecCCCchHHHHHHhhc
Q 040913 189 GLSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 189 ~~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
...+|+|+|++|+||+|.|..+.+
T Consensus 10 ~~~II~itGk~~SGKd~va~~l~~ 33 (202)
T 3ch4_B 10 PRLVLLFSGKRKSGKDFVTEALQS 33 (202)
T ss_dssp CSEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCChHHHHHHHHH
Confidence 467999999999999999988765
No 429
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=90.03 E-value=0.72 Score=52.16 Aligned_cols=24 Identities=25% Similarity=0.235 Sum_probs=21.3
Q ss_pred cEEEEEEecCCCchHHHHHHhhcC
Q 040913 190 LSVVAILDSSGFDKTAFAADTYNN 213 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~~ 213 (425)
-..++|||..|+|||||++.+..-
T Consensus 444 G~~vaivG~sGsGKSTll~ll~~~ 467 (1321)
T 4f4c_A 444 GQTVALVGSSGCGKSTIISLLLRY 467 (1321)
T ss_dssp TCEEEEEECSSSCHHHHHHHHTTS
T ss_pred CcEEEEEecCCCcHHHHHHHhccc
Confidence 468999999999999999998763
No 430
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=90.03 E-value=0.19 Score=46.11 Aligned_cols=24 Identities=21% Similarity=0.212 Sum_probs=20.9
Q ss_pred cEEEEEEecCCCchHHHHHHhhcC
Q 040913 190 LSVVAILDSSGFDKTAFAADTYNN 213 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~~ 213 (425)
...|+++|.+|+|||||...+...
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhCC
Confidence 456899999999999999998764
No 431
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=89.96 E-value=0.19 Score=45.00 Aligned_cols=26 Identities=12% Similarity=0.196 Sum_probs=22.1
Q ss_pred CcEEEEEEecCCCchHHHHHHhhcCc
Q 040913 189 GLSVVAILDSSGFDKTAFAADTYNNN 214 (425)
Q Consensus 189 ~~~vi~IvG~gGvGKTtLa~~v~~~~ 214 (425)
...-|+++|.+|+|||||...+....
T Consensus 28 ~~~~i~lvG~~g~GKStlin~l~g~~ 53 (239)
T 3lxx_A 28 SQLRIVLVGKTGAGKSATGNSILGRK 53 (239)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTSC
T ss_pred CceEEEEECCCCCCHHHHHHHHcCCC
Confidence 35678999999999999999988743
No 432
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=89.92 E-value=0.15 Score=45.75 Aligned_cols=22 Identities=18% Similarity=0.098 Sum_probs=19.7
Q ss_pred EEEEEEecCCCchHHHHHHhhc
Q 040913 191 SVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 191 ~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
.-++|.|++|+||||+|+.+.+
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~ 30 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKE 30 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred cceeeECCCCCCHHHHHHHHHH
Confidence 4579999999999999998876
No 433
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=89.90 E-value=0.17 Score=43.42 Aligned_cols=24 Identities=13% Similarity=0.202 Sum_probs=20.7
Q ss_pred cEEEEEEecCCCchHHHHHHhhcC
Q 040913 190 LSVVAILDSSGFDKTAFAADTYNN 213 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~~ 213 (425)
..-|.|+|.+|+|||||...+.+.
T Consensus 18 ~~ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 18 MLKCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 346889999999999999998864
No 434
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=89.89 E-value=0.18 Score=51.18 Aligned_cols=23 Identities=13% Similarity=0.128 Sum_probs=20.7
Q ss_pred cEEEEEEecCCCchHHHHHHhhc
Q 040913 190 LSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
..+|.++|++|+||||+|+.+..
T Consensus 35 ~~lIvlvGlpGSGKSTia~~La~ 57 (520)
T 2axn_A 35 PTVIVMVGLPARGKTYISKKLTR 57 (520)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999999865
No 435
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=89.88 E-value=0.17 Score=44.12 Aligned_cols=24 Identities=13% Similarity=0.072 Sum_probs=20.3
Q ss_pred cEEEEEEecCCCchHHHHHHhhcC
Q 040913 190 LSVVAILDSSGFDKTAFAADTYNN 213 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~~ 213 (425)
.--|.|+|.+|+|||||...+.+.
T Consensus 9 ~~ki~i~G~~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 9 FIKCVTVGDGAVGKTCMLICYTSN 32 (212)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 345789999999999999988764
No 436
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=89.88 E-value=0.17 Score=43.91 Aligned_cols=24 Identities=13% Similarity=0.152 Sum_probs=20.8
Q ss_pred cEEEEEEecCCCchHHHHHHhhcC
Q 040913 190 LSVVAILDSSGFDKTAFAADTYNN 213 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~~ 213 (425)
..-|.|+|.+|+|||||...+.+.
T Consensus 29 ~~ki~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 29 LFKLVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhhC
Confidence 556889999999999999988764
No 437
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=89.79 E-value=0.18 Score=43.74 Aligned_cols=24 Identities=13% Similarity=0.098 Sum_probs=20.5
Q ss_pred cEEEEEEecCCCchHHHHHHhhcC
Q 040913 190 LSVVAILDSSGFDKTAFAADTYNN 213 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~~ 213 (425)
..-|.|+|.+|+|||||...+.+.
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 25 RKKLVIVGDGACGKTCLLIVFSKD 48 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 345789999999999999988764
No 438
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=89.78 E-value=0.29 Score=48.92 Aligned_cols=35 Identities=23% Similarity=0.094 Sum_probs=23.5
Q ss_pred HHHHHHhcCCCCcEEEEEEecCCCchHHHH-HHhhcC
Q 040913 178 EWFDLLIEGPIGLSVVAILDSSGFDKTAFA-ADTYNN 213 (425)
Q Consensus 178 ~l~~~L~~~~~~~~vi~IvG~gGvGKTtLa-~~v~~~ 213 (425)
+.++.|..=. .-.-++|+|..|+|||+|| ..+.|.
T Consensus 164 raID~l~Pig-rGQR~~I~g~~g~GKT~Lal~~I~~~ 199 (515)
T 2r9v_A 164 KAIDSMIPIG-RGQRELIIGDRQTGKTAIAIDTIINQ 199 (515)
T ss_dssp HHHHHHSCEE-TTCBEEEEEETTSSHHHHHHHHHHTT
T ss_pred cccccccccc-cCCEEEEEcCCCCCccHHHHHHHHHh
Confidence 3455554321 1234789999999999995 577774
No 439
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=89.69 E-value=0.17 Score=44.64 Aligned_cols=23 Identities=17% Similarity=0.206 Sum_probs=19.8
Q ss_pred cEEEEEEecCCCchHHHHHHhhc
Q 040913 190 LSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
..-|.|+|.+|+|||||...+..
T Consensus 37 ~~kVvlvG~~~vGKSSLl~r~~~ 59 (211)
T 2g3y_A 37 YYRVVLIGEQGVGKSTLANIFAG 59 (211)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 45588999999999999998764
No 440
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=89.69 E-value=0.14 Score=51.10 Aligned_cols=24 Identities=21% Similarity=0.140 Sum_probs=21.0
Q ss_pred cEEEEEEecCCCchHHHHHHhhcC
Q 040913 190 LSVVAILDSSGFDKTAFAADTYNN 213 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~~ 213 (425)
-.+++|+|..|+|||||++.+..-
T Consensus 138 Ge~v~IvGpnGsGKSTLlr~L~Gl 161 (460)
T 2npi_A 138 GPRVVIVGGSQTGKTSLSRTLCSY 161 (460)
T ss_dssp CCCEEEEESTTSSHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCc
Confidence 457999999999999999988763
No 441
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=89.69 E-value=0.093 Score=51.86 Aligned_cols=25 Identities=24% Similarity=0.337 Sum_probs=20.8
Q ss_pred EEEEEecCCCchHHHHHHhhcCccc
Q 040913 192 VVAILDSSGFDKTAFAADTYNNNHV 216 (425)
Q Consensus 192 vi~IvG~gGvGKTtLa~~v~~~~~~ 216 (425)
-++|.|..|+|||+|+.++.+....
T Consensus 149 r~~Ifgg~G~GKt~L~~~Ia~~~~a 173 (464)
T 3gqb_B 149 KLPIFSGSGLPANEIAAQIARQATV 173 (464)
T ss_dssp BCCEEEETTSCHHHHHHHHHHHCBC
T ss_pred EEEEecCCCCCchHHHHHHHHHHHh
Confidence 4678999999999999998885443
No 442
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=89.67 E-value=0.17 Score=48.53 Aligned_cols=23 Identities=13% Similarity=0.180 Sum_probs=20.8
Q ss_pred EEEEEEecCCCchHHHHHHhhcC
Q 040913 191 SVVAILDSSGFDKTAFAADTYNN 213 (425)
Q Consensus 191 ~vi~IvG~gGvGKTtLa~~v~~~ 213 (425)
.+++|+|++|+|||||.+.+...
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~g~ 238 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALLGL 238 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHHCC
T ss_pred CEEEEECCCCccHHHHHHHHhcc
Confidence 47899999999999999999873
No 443
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=89.66 E-value=0.17 Score=43.93 Aligned_cols=24 Identities=13% Similarity=0.313 Sum_probs=20.6
Q ss_pred cEEEEEEecCCCchHHHHHHhhcC
Q 040913 190 LSVVAILDSSGFDKTAFAADTYNN 213 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~~ 213 (425)
..-|.|+|.+|+|||||...+...
T Consensus 20 ~~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 20 IMKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 456889999999999999988754
No 444
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=89.62 E-value=0.11 Score=44.03 Aligned_cols=24 Identities=21% Similarity=0.235 Sum_probs=10.2
Q ss_pred cEEEEEEecCCCchHHHHHHhhcC
Q 040913 190 LSVVAILDSSGFDKTAFAADTYNN 213 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~~ 213 (425)
..-|.|+|.+|+|||||...+.+.
T Consensus 8 ~~ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 8 LFKLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEEEECCCCC------------
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 456889999999999999887753
No 445
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=89.61 E-value=0.23 Score=49.71 Aligned_cols=77 Identities=12% Similarity=0.091 Sum_probs=44.2
Q ss_pred EEEEEEecCCCchHHHH-HHhhcCccccccccchHHH--------HHHHHHHhCCCCCCC----------ccCC--C---
Q 040913 191 SVVAILDSSGFDKTAFA-ADTYNNNHVKFYFDCLAWI--------LDDIIRSLMPPSRVT----------VIIG--E--- 246 (425)
Q Consensus 191 ~vi~IvG~gGvGKTtLa-~~v~~~~~~~~~F~~~~wv--------~~~il~~l~~~~~~~----------~~~~--~--- 246 (425)
.-++|+|..|+|||+|| ..+.|.. ...+- ++++ ..++.+.+....... .... .
T Consensus 164 QR~~Ifg~~g~GKT~Lal~~I~~~~--~~dv~-~V~~~iGeR~~Ev~~~~~~~~~~g~m~rtvvV~atad~p~~~r~~a~ 240 (507)
T 1fx0_A 164 QRELIIGDRQTGKTAVATDTILNQQ--GQNVI-CVYVAIGQKASSVAQVVTNFQERGAMEYTIVVAETADSPATLQYLAP 240 (507)
T ss_dssp CBCBEEESSSSSHHHHHHHHHHTCC--TTTCE-EEEEEESCCHHHHHHHHHHTGGGTGGGSEEEEEECTTSCGGGTTHHH
T ss_pred CEEEEecCCCCCccHHHHHHHHHhh--cCCcE-EEEEEcCCCchHHHHHHHHHHhcCccccceEEEECCCCCHHHHHHHH
Confidence 34689999999999995 5777743 22221 2233 666666665432110 0000 1
Q ss_pred -CHHHHHHHHHHHhcCCeEEEEecccC
Q 040913 247 -DYKLKKSILRDFLTNKKYFIALDDVC 272 (425)
Q Consensus 247 -~~~~l~~~l~~~l~~kr~LlVLDdvw 272 (425)
..-.+.+.++. +|+..||++||+-
T Consensus 241 ~~a~tiAEyfrd--~G~dVLli~Dslt 265 (507)
T 1fx0_A 241 YTGAALAEYFMY--RERHTLIIYDDLS 265 (507)
T ss_dssp HHHHHHHHHHHH--TTCEEEEEEECHH
T ss_pred HHHHHHHHHHHH--cCCcEEEEEecHH
Confidence 11233344444 5899999999984
No 446
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=89.56 E-value=0.22 Score=41.30 Aligned_cols=23 Identities=13% Similarity=0.182 Sum_probs=19.8
Q ss_pred cEEEEEEecCCCchHHHHHHhhc
Q 040913 190 LSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
.++..|+|+.|.||||+..+++-
T Consensus 23 ~g~~~I~G~NGsGKStil~Ai~~ 45 (149)
T 1f2t_A 23 EGINLIIGQNGSGKSSLLDAILV 45 (149)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 46789999999999999888753
No 447
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=89.55 E-value=0.14 Score=52.26 Aligned_cols=23 Identities=22% Similarity=0.049 Sum_probs=21.2
Q ss_pred cEEEEEEecCCCchHHHHHHhhc
Q 040913 190 LSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
-.+|.|+|+.|+|||||++.+..
T Consensus 369 G~iI~LiG~sGSGKSTLar~La~ 391 (552)
T 3cr8_A 369 GFTVFFTGLSGAGKSTLARALAA 391 (552)
T ss_dssp CEEEEEEESSCHHHHHHHHHHHH
T ss_pred ceEEEEECCCCChHHHHHHHHHH
Confidence 57899999999999999999887
No 448
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=89.54 E-value=0.18 Score=47.20 Aligned_cols=31 Identities=19% Similarity=0.203 Sum_probs=25.0
Q ss_pred HHHHHHHHhcCCCCcEEEEEEecCCCchHHHHHHhh
Q 040913 176 REEWFDLLIEGPIGLSVVAILDSSGFDKTAFAADTY 211 (425)
Q Consensus 176 ~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLa~~v~ 211 (425)
.+++.+.+. -.+++++|+.|+|||||.+.+.
T Consensus 156 i~~L~~~l~-----G~i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 156 IDELVDYLE-----GFICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp HHHHHHHTT-----TCEEEEECSTTSSHHHHHHHHH
T ss_pred HHHHHhhcc-----CcEEEEECCCCCCHHHHHHHHH
Confidence 556666554 2478999999999999999987
No 449
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=89.40 E-value=0.2 Score=43.86 Aligned_cols=24 Identities=33% Similarity=0.358 Sum_probs=20.6
Q ss_pred cEEEEEEecCCCchHHHHHHhhcC
Q 040913 190 LSVVAILDSSGFDKTAFAADTYNN 213 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~~ 213 (425)
.--|.|+|..|+|||||...+.+.
T Consensus 25 ~~ki~vvG~~~~GKSsLi~~l~~~ 48 (217)
T 2f7s_A 25 LIKLLALGDSGVGKTTFLYRYTDN 48 (217)
T ss_dssp EEEEEEESCTTSSHHHHHHHHHCS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 456889999999999999998764
No 450
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=89.39 E-value=0.35 Score=48.31 Aligned_cols=35 Identities=20% Similarity=0.063 Sum_probs=23.3
Q ss_pred HHHHHHhcCCCCcEEEEEEecCCCchHHHH-HHhhcC
Q 040913 178 EWFDLLIEGPIGLSVVAILDSSGFDKTAFA-ADTYNN 213 (425)
Q Consensus 178 ~l~~~L~~~~~~~~vi~IvG~gGvGKTtLa-~~v~~~ 213 (425)
+.++.|..=.. -.-++|+|..|+|||+|| ..+.|.
T Consensus 151 raID~l~Pigr-GQR~~Ifg~~g~GKT~Lal~~I~~~ 186 (502)
T 2qe7_A 151 KAIDSMIPIGR-GQRELIIGDRQTGKTTIAIDTIINQ 186 (502)
T ss_dssp HHHHHSSCCBT-TCBCEEEECSSSCHHHHHHHHHHGG
T ss_pred eeccccccccc-CCEEEEECCCCCCchHHHHHHHHHh
Confidence 34555543211 234689999999999995 577774
No 451
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=89.32 E-value=0.18 Score=49.63 Aligned_cols=21 Identities=14% Similarity=0.401 Sum_probs=19.1
Q ss_pred EEEEecCCCchHHHHHHhhcC
Q 040913 193 VAILDSSGFDKTAFAADTYNN 213 (425)
Q Consensus 193 i~IvG~gGvGKTtLa~~v~~~ 213 (425)
|+|+|..|+|||||.+.+...
T Consensus 34 I~lvG~sGaGKSTLln~L~g~ 54 (418)
T 2qag_C 34 LMVVGESGLGKSTLINSLFLT 54 (418)
T ss_dssp EEEECCTTSSHHHHHHHHTTC
T ss_pred EEEECCCCCcHHHHHHHHhCC
Confidence 499999999999999998864
No 452
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=89.31 E-value=0.19 Score=44.55 Aligned_cols=22 Identities=14% Similarity=0.199 Sum_probs=18.6
Q ss_pred EEEEEecCCCchHHHHHHhhcC
Q 040913 192 VVAILDSSGFDKTAFAADTYNN 213 (425)
Q Consensus 192 vi~IvG~gGvGKTtLa~~v~~~ 213 (425)
-|.|+|-+|+|||+|...+.++
T Consensus 15 KivlvGd~~VGKTsLi~r~~~~ 36 (216)
T 4dkx_A 15 KLVFLGEQSVGKTSLITRFMYD 36 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCcCHHHHHHHHHhC
Confidence 3678999999999999987653
No 453
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=89.28 E-value=0.19 Score=44.12 Aligned_cols=24 Identities=13% Similarity=0.079 Sum_probs=20.3
Q ss_pred cEEEEEEecCCCchHHHHHHhhcC
Q 040913 190 LSVVAILDSSGFDKTAFAADTYNN 213 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~~ 213 (425)
.--|.|+|.+|+|||||...+.+.
T Consensus 27 ~~ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 27 RCKLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 345779999999999999998764
No 454
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=89.24 E-value=0.19 Score=51.21 Aligned_cols=23 Identities=30% Similarity=0.420 Sum_probs=20.7
Q ss_pred cEEEEEEecCCCchHHHHHHhhc
Q 040913 190 LSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
-.+++|+|+.|+|||||++.++.
T Consensus 294 Gei~~i~G~nGsGKSTLl~~l~G 316 (538)
T 3ozx_A 294 GEIIGILGPNGIGKTTFARILVG 316 (538)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 35899999999999999999875
No 455
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=89.13 E-value=0.19 Score=49.71 Aligned_cols=34 Identities=12% Similarity=0.069 Sum_probs=25.1
Q ss_pred HHHHHhcCCCCcEEEEEEecCCCchHHHHHHhhcC
Q 040913 179 WFDLLIEGPIGLSVVAILDSSGFDKTAFAADTYNN 213 (425)
Q Consensus 179 l~~~L~~~~~~~~vi~IvG~gGvGKTtLa~~v~~~ 213 (425)
+++-+.. =..-.+++|+|..|+|||||.+.+.+.
T Consensus 147 vld~vl~-i~~Gq~~~IvG~sGsGKSTLl~~Iag~ 180 (438)
T 2dpy_A 147 AINALLT-VGRGQRMGLFAGSGVGKSVLLGMMARY 180 (438)
T ss_dssp HHHHHSC-CBTTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred EEeeeEE-ecCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 4444432 123468999999999999999999874
No 456
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=89.09 E-value=0.2 Score=43.15 Aligned_cols=21 Identities=14% Similarity=-0.088 Sum_probs=17.3
Q ss_pred EEEEEEecCCCchHHHHHHhh
Q 040913 191 SVVAILDSSGFDKTAFAADTY 211 (425)
Q Consensus 191 ~vi~IvG~gGvGKTtLa~~v~ 211 (425)
.++.|+|+.|+||||++..+.
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~ 24 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFV 24 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHH
Confidence 477899999999999985444
No 457
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=88.99 E-value=0.22 Score=49.79 Aligned_cols=23 Identities=9% Similarity=0.105 Sum_probs=20.4
Q ss_pred cEEEEEEecCCCchHHHHHHhhc
Q 040913 190 LSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
..+|.++|++|+||||+++.+..
T Consensus 39 ~~~IvlvGlpGsGKSTia~~La~ 61 (469)
T 1bif_A 39 PTLIVMVGLPARGKTYISKKLTR 61 (469)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHH
Confidence 56788999999999999998865
No 458
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=88.98 E-value=0.2 Score=51.02 Aligned_cols=23 Identities=26% Similarity=0.358 Sum_probs=20.8
Q ss_pred cEEEEEEecCCCchHHHHHHhhc
Q 040913 190 LSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
-.+++|+|+.|+|||||++.++.
T Consensus 312 Ge~~~i~G~NGsGKSTLlk~l~G 334 (538)
T 1yqt_A 312 GEVIGIVGPNGIGKTTFVKMLAG 334 (538)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 35899999999999999999876
No 459
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=88.96 E-value=0.26 Score=44.69 Aligned_cols=25 Identities=12% Similarity=0.170 Sum_probs=21.3
Q ss_pred CcEEEEEEecCCCchHHHHHHhhcC
Q 040913 189 GLSVVAILDSSGFDKTAFAADTYNN 213 (425)
Q Consensus 189 ~~~vi~IvG~gGvGKTtLa~~v~~~ 213 (425)
....|+|+|.+|+|||||...+...
T Consensus 21 ~~~~I~lvG~~g~GKStl~n~l~~~ 45 (260)
T 2xtp_A 21 SELRIILVGKTGTGKSAAGNSILRK 45 (260)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHTS
T ss_pred CceEEEEECCCCCCHHHHHHHHhCC
Confidence 3567899999999999999998764
No 460
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=88.93 E-value=0.41 Score=47.26 Aligned_cols=45 Identities=18% Similarity=0.147 Sum_probs=32.7
Q ss_pred ccchhhHHHHHHHHhcC---------CCCcEEEEEEecCCCchHHHHHHhhcCc
Q 040913 170 SEFERAREEWFDLLIEG---------PIGLSVVAILDSSGFDKTAFAADTYNNN 214 (425)
Q Consensus 170 vGr~~~~~~l~~~L~~~---------~~~~~vi~IvG~gGvGKTtLa~~v~~~~ 214 (425)
.|.++-.+.|.+.+... .....-|+|+|.+|+|||||...+....
T Consensus 151 ~gv~~L~~~i~~~l~~~~~~~~~~~~~~~~~kvaivG~~gvGKSTLln~l~g~~ 204 (439)
T 1mky_A 151 INLDTMLETIIKKLEEKGLDLESKPEITDAIKVAIVGRPNVGKSTLFNAILNKE 204 (439)
T ss_dssp BSHHHHHHHHHHHHHHTTCCSSSCCCCCSCEEEEEECSTTSSHHHHHHHHHTST
T ss_pred CCHHHHHHHHHHhcccccccchhccccccCceEEEECCCCCCHHHHHHHHhCCc
Confidence 35566677777666521 1234678999999999999999987753
No 461
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=88.84 E-value=0.22 Score=48.64 Aligned_cols=23 Identities=9% Similarity=0.027 Sum_probs=19.8
Q ss_pred CcEEEEEEecCCCchHHHHHHhh
Q 040913 189 GLSVVAILDSSGFDKTAFAADTY 211 (425)
Q Consensus 189 ~~~vi~IvG~gGvGKTtLa~~v~ 211 (425)
.-.++.|+|.+|+|||||+..+.
T Consensus 177 ~Gei~~I~G~sGsGKTTLl~~la 199 (400)
T 3lda_A 177 TGSITELFGEFRTGKSQLCHTLA 199 (400)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHH
T ss_pred CCcEEEEEcCCCCChHHHHHHHH
Confidence 35689999999999999999664
No 462
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=88.84 E-value=0.17 Score=44.51 Aligned_cols=26 Identities=15% Similarity=0.024 Sum_probs=22.3
Q ss_pred CcEEEEEEecCCCchHHHHHHhhcCc
Q 040913 189 GLSVVAILDSSGFDKTAFAADTYNNN 214 (425)
Q Consensus 189 ~~~vi~IvG~gGvGKTtLa~~v~~~~ 214 (425)
....|.|+|..|+|||||...+.+..
T Consensus 28 ~~~~i~v~G~~~~GKSslin~l~~~~ 53 (223)
T 4dhe_A 28 VQPEIAFAGRSNAGKSTAINVLCNQK 53 (223)
T ss_dssp CSCEEEEEESCHHHHHHHHHHHTTCS
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCC
Confidence 35678899999999999999998754
No 463
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=88.76 E-value=0.24 Score=43.80 Aligned_cols=23 Identities=13% Similarity=-0.018 Sum_probs=20.6
Q ss_pred cEEEEEEecCCCchHHHHHHhhc
Q 040913 190 LSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
...|.|-|+.|+||||+++.+.+
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~ 28 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAE 28 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHH
Confidence 46789999999999999999876
No 464
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=88.75 E-value=0.26 Score=46.07 Aligned_cols=24 Identities=17% Similarity=0.225 Sum_probs=21.3
Q ss_pred cEEEEEEecCCCchHHHHHHhhcC
Q 040913 190 LSVVAILDSSGFDKTAFAADTYNN 213 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~~ 213 (425)
...|+|+|.+|+|||||...+...
T Consensus 7 ~g~V~ivG~~nvGKSTLln~l~g~ 30 (301)
T 1wf3_A 7 SGFVAIVGKPNVGKSTLLNNLLGV 30 (301)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 567999999999999999998764
No 465
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=88.74 E-value=0.45 Score=43.92 Aligned_cols=38 Identities=11% Similarity=0.161 Sum_probs=27.5
Q ss_pred HHHHHHHhcC----CCCcEEEEEEecCCCchHHHHHHhhcCc
Q 040913 177 EEWFDLLIEG----PIGLSVVAILDSSGFDKTAFAADTYNNN 214 (425)
Q Consensus 177 ~~l~~~L~~~----~~~~~vi~IvG~gGvGKTtLa~~v~~~~ 214 (425)
+++.+.|... .....-|+|+|.+|+|||||...+....
T Consensus 9 ~~l~~~l~~~~~~~~~~~~~i~vvG~~~~GKSSLln~l~g~~ 50 (299)
T 2aka_B 9 NRLQDAFSAIGQNADLDLPQIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp HHHHHHHTTSCCCTTCCCCEEEEEEBTTSCHHHHHHHHHTSC
T ss_pred HHHHHHHHhcCCCCCCCCCeEEEEeCCCCCHHHHHHHHHCCC
Confidence 4444545432 2346679999999999999999988753
No 466
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=88.72 E-value=0.22 Score=44.58 Aligned_cols=21 Identities=19% Similarity=0.091 Sum_probs=17.2
Q ss_pred EEEEEecCCCchHHHHHHhhc
Q 040913 192 VVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 192 vi~IvG~gGvGKTtLa~~v~~ 212 (425)
.|.+.|.||+||||+|..+..
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~ 28 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAH 28 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHH
Confidence 467789999999999766654
No 467
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=88.69 E-value=0.21 Score=50.79 Aligned_cols=23 Identities=22% Similarity=0.133 Sum_probs=20.6
Q ss_pred cEEEEEEecCCCchHHHHHHhhc
Q 040913 190 LSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
-.+++|+|+.|.|||||.+.+..
T Consensus 47 Ge~~~LvG~NGaGKSTLlk~l~G 69 (538)
T 1yqt_A 47 GMVVGIVGPNGTGKSTAVKILAG 69 (538)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 45899999999999999999875
No 468
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=88.69 E-value=0.23 Score=50.53 Aligned_cols=23 Identities=17% Similarity=0.245 Sum_probs=21.1
Q ss_pred cEEEEEEecCCCchHHHHHHhhc
Q 040913 190 LSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
-.+++|+|+.|+|||||.+.+..
T Consensus 25 Gei~gLiGpNGaGKSTLlkiL~G 47 (538)
T 3ozx_A 25 NTILGVLGKNGVGKTTVLKILAG 47 (538)
T ss_dssp TEEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCcHHHHHHHHhc
Confidence 57899999999999999999876
No 469
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=88.68 E-value=0.22 Score=49.82 Aligned_cols=22 Identities=18% Similarity=0.161 Sum_probs=20.3
Q ss_pred EEEEEEecCCCchHHHHHHhhc
Q 040913 191 SVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 191 ~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
.+++|+|+.|+|||||.+.+..
T Consensus 30 e~~~liG~nGsGKSTLl~~l~G 51 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVT 51 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHhc
Confidence 6899999999999999998875
No 470
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=88.66 E-value=0.23 Score=46.49 Aligned_cols=33 Identities=18% Similarity=0.196 Sum_probs=26.3
Q ss_pred HHHHHHHHhcCCCCcEEEEEEecCCCchHHHHHHhhcC
Q 040913 176 REEWFDLLIEGPIGLSVVAILDSSGFDKTAFAADTYNN 213 (425)
Q Consensus 176 ~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLa~~v~~~ 213 (425)
.+++.+.+.. .+++|+|+.|+|||||.+.+...
T Consensus 160 v~~lf~~l~g-----eiv~l~G~sG~GKSTll~~l~g~ 192 (301)
T 1u0l_A 160 IEELKEYLKG-----KISTMAGLSGVGKSSLLNAINPG 192 (301)
T ss_dssp HHHHHHHHSS-----SEEEEECSTTSSHHHHHHHHSTT
T ss_pred HHHHHHHhcC-----CeEEEECCCCCcHHHHHHHhccc
Confidence 5666666542 47899999999999999999873
No 471
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=88.57 E-value=0.29 Score=43.73 Aligned_cols=24 Identities=17% Similarity=0.075 Sum_probs=21.5
Q ss_pred CcEEEEEEecCCCchHHHHHHhhc
Q 040913 189 GLSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 189 ~~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
....|.|.|..|+||||+++.+.+
T Consensus 20 ~~~~i~~~G~~g~GKst~~~~l~~ 43 (223)
T 3ld9_A 20 GSMFITFEGIDGSGKTTQSHLLAE 43 (223)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 367899999999999999999877
No 472
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=88.55 E-value=0.22 Score=45.71 Aligned_cols=23 Identities=13% Similarity=0.326 Sum_probs=19.8
Q ss_pred EEEEEEecCCCchHHHHHHhhcC
Q 040913 191 SVVAILDSSGFDKTAFAADTYNN 213 (425)
Q Consensus 191 ~vi~IvG~gGvGKTtLa~~v~~~ 213 (425)
--|.|+|.+|+|||||...++..
T Consensus 9 ~~I~vvG~~g~GKSTLin~L~~~ 31 (274)
T 3t5d_A 9 FTLMVVGESGLGKSTLINSLFLT 31 (274)
T ss_dssp EEEEEEECTTSSHHHHHHHHSSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCC
Confidence 35789999999999999987764
No 473
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=88.48 E-value=0.18 Score=50.97 Aligned_cols=53 Identities=15% Similarity=0.181 Sum_probs=34.9
Q ss_pred HHHHHHhcCCCCcEEEEEEecCCCchHHHHHHhhcCccccccccchHHH--------HHHHHHHhC
Q 040913 178 EWFDLLIEGPIGLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWI--------LDDIIRSLM 235 (425)
Q Consensus 178 ~l~~~L~~~~~~~~vi~IvG~gGvGKTtLa~~v~~~~~~~~~F~~~~wv--------~~~il~~l~ 235 (425)
++++.|..=. .-.-++|.|..|+|||+|++.+.+... -+.++++ ..+++..+.
T Consensus 216 rvID~l~Pig-kGqr~~I~g~~g~GKT~L~~~ia~~~~----~~~~V~~~iGER~~Ev~e~~~~~~ 276 (588)
T 3mfy_A 216 RVIDTFFPQA-KGGTAAIPGPAGSGKTVTQHQLAKWSD----AQVVIYIGCGERGNEMTDVLEEFP 276 (588)
T ss_dssp HHHHHHSCEE-TTCEEEECSCCSHHHHHHHHHHHHHSS----CSEEEEEECCSSSSHHHHHHHHTT
T ss_pred chhhccCCcc-cCCeEEeecCCCCCHHHHHHHHHhccC----CCEEEEEEecccHHHHHHHHHHHH
Confidence 4566665421 134578999999999999999877322 2334444 677777764
No 474
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=88.47 E-value=0.22 Score=46.55 Aligned_cols=26 Identities=12% Similarity=0.258 Sum_probs=22.5
Q ss_pred CCcEEEEEEecCCCchHHHHHHhhcC
Q 040913 188 IGLSVVAILDSSGFDKTAFAADTYNN 213 (425)
Q Consensus 188 ~~~~vi~IvG~gGvGKTtLa~~v~~~ 213 (425)
.....|+|+|..|+|||||...+...
T Consensus 22 ~~~~~I~vvG~~~~GKSTlln~l~g~ 47 (315)
T 1jwy_B 22 LDLPQIVVVGSQSSGKSSVLENIVGR 47 (315)
T ss_dssp TCCCEEEEEECSSSSHHHHHHHHHTS
T ss_pred CCCCeEEEEcCCCCCHHHHHHHHHCC
Confidence 35778999999999999999998764
No 475
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=88.35 E-value=0.23 Score=51.30 Aligned_cols=114 Identities=12% Similarity=0.138 Sum_probs=60.1
Q ss_pred cEEEEEEecCCCchHHHHHHhhcCcc-----c----------cc---cccchHHH---------------HHHHHHHhCC
Q 040913 190 LSVVAILDSSGFDKTAFAADTYNNNH-----V----------KF---YFDCLAWI---------------LDDIIRSLMP 236 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~~~~-----~----------~~---~F~~~~wv---------------~~~il~~l~~ 236 (425)
-.+++|+|+.|+|||||.+.+..-.. + +. .|+..+.- ..+++..+..
T Consensus 382 Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~~~l 461 (607)
T 3bk7_A 382 GEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYKPQYIKAEYEGTVYELLSKIDSSKLNSNFYKTELLKPLGI 461 (607)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCCCCCEEEECSSCCCCCSSBHHHHHHHHHHHHHHCHHHHHHTHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEEeeEEEEEecCccCCCCCcHHHHHHhhhccCCCHHHHHHHHHHHcCC
Confidence 35899999999999999999875311 1 00 11211111 2234444443
Q ss_pred CCCCC-ccCCCCHHHH-HHHHHHHhcCCeEEEEecccCCCh---hhHHHHHhhCCC--CCCCcEEEEecCChhHH
Q 040913 237 PSRVT-VIIGEDYKLK-KSILRDFLTNKKYFIALDDVCHNI---EIWDDLEEVLPD--NQNGSRVLITVINPSLL 304 (425)
Q Consensus 237 ~~~~~-~~~~~~~~~l-~~~l~~~l~~kr~LlVLDdvw~~~---~~~~~l~~~l~~--~~~gskIivTTR~~~va 304 (425)
..... .....+..+. .-.|...|....-+++||.-- +. ..-..+...+.. ...|..||++|.+...+
T Consensus 462 ~~~~~~~~~~LSGGe~QRv~iAraL~~~p~lLlLDEPt-~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~ 535 (607)
T 3bk7_A 462 IDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPS-AYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMI 535 (607)
T ss_dssp TTTTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTT-TTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHH
T ss_pred chHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCc-cCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHH
Confidence 21111 2223343333 345666677778899999864 32 221222222221 12356688888876654
No 476
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=88.34 E-value=0.24 Score=42.84 Aligned_cols=22 Identities=23% Similarity=0.299 Sum_probs=17.9
Q ss_pred EEEEEE-ecCCCchHHHHHHhhc
Q 040913 191 SVVAIL-DSSGFDKTAFAADTYN 212 (425)
Q Consensus 191 ~vi~Iv-G~gGvGKTtLa~~v~~ 212 (425)
++|+|+ +-||+||||+|..+..
T Consensus 2 ~vi~v~s~kgG~GKTt~a~~la~ 24 (206)
T 4dzz_A 2 KVISFLNPKGGSGKTTAVINIAT 24 (206)
T ss_dssp EEEEECCSSTTSSHHHHHHHHHH
T ss_pred eEEEEEeCCCCccHHHHHHHHHH
Confidence 678888 6789999999877654
No 477
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=88.25 E-value=0.25 Score=45.02 Aligned_cols=23 Identities=13% Similarity=0.159 Sum_probs=20.2
Q ss_pred EEEEEEecCCCchHHHHHHhhcC
Q 040913 191 SVVAILDSSGFDKTAFAADTYNN 213 (425)
Q Consensus 191 ~vi~IvG~gGvGKTtLa~~v~~~ 213 (425)
+.|+++|.+|+|||||...+...
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~ 24 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNA 24 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
Confidence 46899999999999999998764
No 478
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=88.20 E-value=0.25 Score=43.62 Aligned_cols=24 Identities=21% Similarity=0.340 Sum_probs=20.6
Q ss_pred cEEEEEEecCCCchHHHHHHhhcC
Q 040913 190 LSVVAILDSSGFDKTAFAADTYNN 213 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~~ 213 (425)
.--|.|+|.+|+|||||...+.+.
T Consensus 13 ~~ki~v~G~~~vGKSsli~~l~~~ 36 (223)
T 3cpj_B 13 LFKIVLIGDSGVGKSNLLSRFTKN 36 (223)
T ss_dssp EEEEEEESCTTSSHHHHHHHHHHC
T ss_pred eeEEEEECcCCCCHHHHHHHHhcC
Confidence 456889999999999999988764
No 479
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=88.15 E-value=0.35 Score=54.48 Aligned_cols=111 Identities=15% Similarity=0.106 Sum_probs=0.0
Q ss_pred EEEEEecCCCchHHHHHHhhcCccccccccchHHH---------------------------------------------
Q 040913 192 VVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWI--------------------------------------------- 226 (425)
Q Consensus 192 vi~IvG~gGvGKTtLa~~v~~~~~~~~~F~~~~wv--------------------------------------------- 226 (425)
+++|+|..|.|||||++.+.. .-..-...+.+
T Consensus 418 ~~~ivG~sGsGKSTl~~ll~g---~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~g~~~~~~~ 494 (1284)
T 3g5u_A 418 TVALVGNSGCGKSTTVQLMQR---LYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGREDVTMD 494 (1284)
T ss_dssp EEEEECCSSSSHHHHHHHTTT---SSCCSEEEEEETTEEGGGSCHHHHHHHEEEECSSCCCCSSCHHHHHHHHCSSCCHH
T ss_pred EEEEECCCCCCHHHHHHHHhC---CCCCCCeEEEECCEEHHhCCHHHHHhheEEEcCCCccCCccHHHHHhcCCCCCCHH
Q ss_pred ----------HHHHHHHhCCCCCCC----ccCCCCHHHHHHHHHHHhcCCeEEEEecccCC--ChhhHHHHHhhCCCCCC
Q 040913 227 ----------LDDIIRSLMPPSRVT----VIIGEDYKLKKSILRDFLTNKKYFIALDDVCH--NIEIWDDLEEVLPDNQN 290 (425)
Q Consensus 227 ----------~~~il~~l~~~~~~~----~~~~~~~~~l~~~l~~~l~~kr~LlVLDdvw~--~~~~~~~l~~~l~~~~~ 290 (425)
..+.+..+....... ...-+.-+.-.-.|.+.|-.+.-+++||+.-. +.+.-..+...+.....
T Consensus 495 ~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~QriaiARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~ 574 (1284)
T 3g5u_A 495 EIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKARE 574 (1284)
T ss_dssp HHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHHHHCCSEEEEESTTCSSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCcHHHHHhccccccccccCCCCccCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHcC
Q ss_pred CcEEEEecCChhHHH
Q 040913 291 GSRVLITVINPSLLT 305 (425)
Q Consensus 291 gskIivTTR~~~va~ 305 (425)
|..+|+.|...+...
T Consensus 575 ~~t~i~itH~l~~i~ 589 (1284)
T 3g5u_A 575 GRTTIVIAHRLSTVR 589 (1284)
T ss_dssp TSEEEEECSCHHHHT
T ss_pred CCEEEEEecCHHHHH
No 480
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=88.11 E-value=0.25 Score=50.80 Aligned_cols=23 Identities=26% Similarity=0.229 Sum_probs=20.7
Q ss_pred cEEEEEEecCCCchHHHHHHhhc
Q 040913 190 LSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
-.+++|+|+.|+|||||++.+..
T Consensus 369 G~~~~ivG~sGsGKSTLl~~l~g 391 (582)
T 3b60_A 369 GKTVALVGRSGSGKSTIASLITR 391 (582)
T ss_dssp TCEEEEEECTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhh
Confidence 46899999999999999999875
No 481
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=88.11 E-value=0.27 Score=44.50 Aligned_cols=24 Identities=13% Similarity=0.196 Sum_probs=20.7
Q ss_pred cEEEEEEecCCCchHHHHHHhhcC
Q 040913 190 LSVVAILDSSGFDKTAFAADTYNN 213 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~~ 213 (425)
.--|+++|.+|+|||||...+...
T Consensus 21 ~l~I~lvG~~g~GKSSlin~l~~~ 44 (247)
T 3lxw_A 21 TRRLILVGRTGAGKSATGNSILGQ 44 (247)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHTS
T ss_pred ceEEEEECCCCCcHHHHHHHHhCC
Confidence 445789999999999999998764
No 482
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=88.10 E-value=0.24 Score=51.14 Aligned_cols=114 Identities=11% Similarity=0.018 Sum_probs=60.7
Q ss_pred EEEEEEecCCCchHHHHHHhhcCccc------------------cccccchHH--H-------------HHHHHHHhCCC
Q 040913 191 SVVAILDSSGFDKTAFAADTYNNNHV------------------KFYFDCLAW--I-------------LDDIIRSLMPP 237 (425)
Q Consensus 191 ~vi~IvG~gGvGKTtLa~~v~~~~~~------------------~~~F~~~~w--v-------------~~~il~~l~~~ 237 (425)
.+++|+|+.|+|||||++.+..-.+- ...|+..++ + ..+++..+...
T Consensus 379 Eiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~~~~~~i~~~~q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~l~l~ 458 (608)
T 3j16_B 379 EILVMMGENGTGKTTLIKLLAGALKPDEGQDIPKLNVSMKPQKIAPKFPGTVRQLFFKKIRGQFLNPQFQTDVVKPLRID 458 (608)
T ss_dssp CEEEEESCTTSSHHHHHHHHHTSSCCSBCCCCCSCCEEEECSSCCCCCCSBHHHHHHHHCSSTTTSHHHHHHTHHHHTST
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCcCccCCcEEEecccccccCCccHHHHHHHHhhcccccHHHHHHHHHHcCCh
Confidence 57999999999999999998752110 111221111 0 23344444322
Q ss_pred CCCC-ccCCCCHHHH-HHHHHHHhcCCeEEEEecccCCCh---hhHHHHHhhCCC--CCCCcEEEEecCChhHHH
Q 040913 238 SRVT-VIIGEDYKLK-KSILRDFLTNKKYFIALDDVCHNI---EIWDDLEEVLPD--NQNGSRVLITVINPSLLT 305 (425)
Q Consensus 238 ~~~~-~~~~~~~~~l-~~~l~~~l~~kr~LlVLDdvw~~~---~~~~~l~~~l~~--~~~gskIivTTR~~~va~ 305 (425)
.... .....+..+. .-.|...|..+.-+|+||.-- +. ..-..+...+.. ...|..||++|.+...+.
T Consensus 459 ~~~~~~~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT-~gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~~~~ 532 (608)
T 3j16_B 459 DIIDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPS-AYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMAT 532 (608)
T ss_dssp TTSSSBSSSCCHHHHHHHHHHHHTTSCCSEEEECCTT-TTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHH
T ss_pred hhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCC-CCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 1111 2233444443 345667788888899999864 22 111122222211 122667888888766553
No 483
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=88.10 E-value=0.25 Score=47.64 Aligned_cols=25 Identities=12% Similarity=0.139 Sum_probs=21.8
Q ss_pred CcEEEEEEecCCCchHHHHHHhhcC
Q 040913 189 GLSVVAILDSSGFDKTAFAADTYNN 213 (425)
Q Consensus 189 ~~~vi~IvG~gGvGKTtLa~~v~~~ 213 (425)
+.++|+|+|.+|+|||||...+.+.
T Consensus 178 ~~~~V~lvG~~naGKSTLln~L~~~ 202 (364)
T 2qtf_A 178 NIPSIGIVGYTNSGKTSLFNSLTGL 202 (364)
T ss_dssp -CCEEEEECBTTSSHHHHHHHHHCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHCC
Confidence 4677999999999999999998874
No 484
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=88.07 E-value=0.38 Score=44.25 Aligned_cols=24 Identities=13% Similarity=0.195 Sum_probs=21.0
Q ss_pred cEEEEEEecCCCchHHHHHHhhcC
Q 040913 190 LSVVAILDSSGFDKTAFAADTYNN 213 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~~ 213 (425)
...|+++|.+|+|||||...+...
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~ 26 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGH 26 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHCC
Confidence 456899999999999999998864
No 485
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=87.99 E-value=0.22 Score=44.66 Aligned_cols=23 Identities=13% Similarity=0.003 Sum_probs=17.7
Q ss_pred cEEEEEEecCCCchHHHHHHhhc
Q 040913 190 LSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
-..|.|-|+.|+||||+++.+.+
T Consensus 25 g~~I~~eG~~GsGKsT~~~~l~~ 47 (227)
T 3v9p_A 25 GKFITFEGIDGAGKTTHLQWFCD 47 (227)
T ss_dssp CCEEEEECCC---CHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999999887
No 486
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=87.92 E-value=0.28 Score=44.19 Aligned_cols=23 Identities=13% Similarity=0.073 Sum_probs=20.8
Q ss_pred cEEEEEEecCCCchHHHHHHhhc
Q 040913 190 LSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
...|.|.|+.|+||||+++.+.+
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~ 49 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVE 49 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999876
No 487
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=87.81 E-value=0.34 Score=43.27 Aligned_cols=23 Identities=17% Similarity=0.186 Sum_probs=18.2
Q ss_pred CcEEEEEEe-cCCCchHHHHHHhh
Q 040913 189 GLSVVAILD-SSGFDKTAFAADTY 211 (425)
Q Consensus 189 ~~~vi~IvG-~gGvGKTtLa~~v~ 211 (425)
..++|+|++ -||+||||+|..+.
T Consensus 3 ~~~vI~v~s~kGGvGKTt~a~~LA 26 (245)
T 3ea0_A 3 AKRVFGFVSAKGGDGGSCIAANFA 26 (245)
T ss_dssp CCEEEEEEESSTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCcchHHHHHHHH
Confidence 367899985 58899999987654
No 488
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=87.76 E-value=0.13 Score=48.35 Aligned_cols=22 Identities=14% Similarity=0.182 Sum_probs=20.4
Q ss_pred EEEEEEecCCCchHHHHHHhhc
Q 040913 191 SVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 191 ~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
.+++|+|++|+|||||.+.+..
T Consensus 174 ~~~~lvG~sG~GKSTLln~L~g 195 (307)
T 1t9h_A 174 KTTVFAGQSGVGKSSLLNAISP 195 (307)
T ss_dssp SEEEEEESHHHHHHHHHHHHCC
T ss_pred CEEEEECCCCCCHHHHHHHhcc
Confidence 4889999999999999999887
No 489
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=87.73 E-value=0.27 Score=50.82 Aligned_cols=23 Identities=13% Similarity=0.159 Sum_probs=20.7
Q ss_pred cEEEEEEecCCCchHHHHHHhhc
Q 040913 190 LSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
-.+++|+|+.|+|||||.+.+..
T Consensus 103 Gei~~LvGpNGaGKSTLLkiL~G 125 (608)
T 3j16_B 103 GQVLGLVGTNGIGKSTALKILAG 125 (608)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCChHHHHHHHHhc
Confidence 45899999999999999999875
No 490
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=87.73 E-value=0.26 Score=50.84 Aligned_cols=23 Identities=26% Similarity=0.147 Sum_probs=20.7
Q ss_pred cEEEEEEecCCCchHHHHHHhhc
Q 040913 190 LSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
-.+++|+|+.|+|||||.+.+..
T Consensus 117 Ge~~~LiG~NGsGKSTLlkiL~G 139 (607)
T 3bk7_A 117 GMVVGIVGPNGTGKTTAVKILAG 139 (607)
T ss_dssp TSEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCChHHHHHHHHhC
Confidence 45899999999999999999875
No 491
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=87.71 E-value=0.17 Score=44.32 Aligned_cols=24 Identities=13% Similarity=0.344 Sum_probs=20.1
Q ss_pred cEEEEEEecCCCchHHHHHHhhcC
Q 040913 190 LSVVAILDSSGFDKTAFAADTYNN 213 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~~ 213 (425)
.--|.|+|..|+|||||...+.+.
T Consensus 11 ~~ki~vvG~~~~GKSsli~~l~~~ 34 (218)
T 4djt_A 11 TYKICLIGDGGVGKTTYINRVLDG 34 (218)
T ss_dssp EEEEEEECCTTSSHHHHHCBCTTC
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 345789999999999999988753
No 492
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=87.58 E-value=0.28 Score=43.76 Aligned_cols=22 Identities=32% Similarity=0.356 Sum_probs=18.9
Q ss_pred cEEEEEEecCCCchHHHHHHhh
Q 040913 190 LSVVAILDSSGFDKTAFAADTY 211 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~ 211 (425)
-.++-|.|.+|+|||+||.++.
T Consensus 30 G~l~~i~G~pG~GKT~l~l~~~ 51 (251)
T 2zts_A 30 GTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEEEeCCCCCHHHHHHHHH
Confidence 4588899999999999998754
No 493
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=87.55 E-value=0.24 Score=47.63 Aligned_cols=22 Identities=14% Similarity=0.383 Sum_probs=19.3
Q ss_pred EEEEEecCCCchHHHHHHhhcC
Q 040913 192 VVAILDSSGFDKTAFAADTYNN 213 (425)
Q Consensus 192 vi~IvG~gGvGKTtLa~~v~~~ 213 (425)
-|+|+|..|+|||||...++..
T Consensus 39 ~I~vvG~~g~GKSTLln~L~~~ 60 (361)
T 2qag_A 39 TLMVVGESGLGKSTLINSLFLT 60 (361)
T ss_dssp CEEECCCTTSCHHHHHHHHTTC
T ss_pred EEEEEcCCCCCHHHHHHHHhCC
Confidence 3689999999999999998764
No 494
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=87.50 E-value=0.31 Score=49.91 Aligned_cols=24 Identities=13% Similarity=-0.115 Sum_probs=21.6
Q ss_pred CcEEEEEEecCCCchHHHHHHhhc
Q 040913 189 GLSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 189 ~~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
...+|.|.|+.|+||||+|+.+.+
T Consensus 395 ~~~~I~l~GlsGSGKSTiA~~La~ 418 (573)
T 1m8p_A 395 QGFTIFLTGYMNSGKDAIARALQV 418 (573)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred cceEEEeecCCCCCHHHHHHHHHH
Confidence 457899999999999999999877
No 495
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=87.45 E-value=0.19 Score=44.14 Aligned_cols=22 Identities=18% Similarity=0.279 Sum_probs=18.5
Q ss_pred cEEEEEEecCCCchHHHHHHhh
Q 040913 190 LSVVAILDSSGFDKTAFAADTY 211 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~ 211 (425)
.--|.|+|.+|+|||||...+.
T Consensus 15 ~~ki~v~G~~~~GKSsli~~~~ 36 (221)
T 3gj0_A 15 QFKLVLVGDGGTGKTTFVKRHL 36 (221)
T ss_dssp EEEEEEEECTTSSHHHHHTTBH
T ss_pred ceEEEEECCCCCCHHHHHHHHH
Confidence 3457899999999999999844
No 496
>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*
Probab=87.34 E-value=0.76 Score=46.62 Aligned_cols=53 Identities=13% Similarity=0.188 Sum_probs=35.7
Q ss_pred HHHHHHhcCCCCcEEEEEEecCCCchHHHHHHhhcCccccccccchHHH--------HHHHHHHhC
Q 040913 178 EWFDLLIEGPIGLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCLAWI--------LDDIIRSLM 235 (425)
Q Consensus 178 ~l~~~L~~~~~~~~vi~IvG~gGvGKTtLa~~v~~~~~~~~~F~~~~wv--------~~~il~~l~ 235 (425)
++++.|..=. .-.-++|.|..|+|||+|++++.+... -+.++++ ..+++..+.
T Consensus 221 rvID~l~Pig-rGqr~~Ifgg~g~GKT~L~~~ia~~~~----~~v~V~~~iGER~~Ev~e~~~~~~ 281 (600)
T 3vr4_A 221 RVIDTFFPVT-KGGAAAVPGPFGAGKTVVQHQIAKWSD----VDLVVYVGCGERGNEMTDVVNEFP 281 (600)
T ss_dssp HHHHHHSCCB-TTCEEEEECCTTSCHHHHHHHHHHHSS----CSEEEEEEEEECHHHHHHHHHHTT
T ss_pred hhhhccCCcc-CCCEEeeecCCCccHHHHHHHHHhccC----CCEEEEEEecccHHHHHHHHHHHH
Confidence 4566665432 134578999999999999999987422 2344444 667777764
No 497
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=87.31 E-value=0.34 Score=44.15 Aligned_cols=24 Identities=17% Similarity=0.173 Sum_probs=20.7
Q ss_pred cEEEEEEecCCCchHHHHHHhhcC
Q 040913 190 LSVVAILDSSGFDKTAFAADTYNN 213 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~~ 213 (425)
...|+++|.+|+|||||...+...
T Consensus 5 ~~kI~lvG~~nvGKTsL~n~l~g~ 28 (258)
T 3a1s_A 5 MVKVALAGCPNVGKTSLFNALTGT 28 (258)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTT
T ss_pred ceEEEEECCCCCCHHHHHHHHHCC
Confidence 456899999999999999998764
No 498
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=87.27 E-value=0.3 Score=42.04 Aligned_cols=21 Identities=10% Similarity=0.134 Sum_probs=18.7
Q ss_pred EEEEecCCCchHHHHHHhhcC
Q 040913 193 VAILDSSGFDKTAFAADTYNN 213 (425)
Q Consensus 193 i~IvG~gGvGKTtLa~~v~~~ 213 (425)
+.|+|.+|+||||+|.++...
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~ 22 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD 22 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS
T ss_pred EEEECCCCCcHHHHHHHHHhc
Confidence 679999999999999988763
No 499
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=87.23 E-value=0.26 Score=50.87 Aligned_cols=23 Identities=26% Similarity=0.221 Sum_probs=20.7
Q ss_pred cEEEEEEecCCCchHHHHHHhhc
Q 040913 190 LSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 190 ~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
-.+++|+|+.|.|||||++.+..
T Consensus 370 G~~~~ivG~sGsGKSTLl~~l~g 392 (595)
T 2yl4_A 370 GSVTALVGPSGSGKSTVLSLLLR 392 (595)
T ss_dssp TCEEEEECCTTSSSTHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 46899999999999999999875
No 500
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=87.21 E-value=0.32 Score=50.22 Aligned_cols=24 Identities=21% Similarity=0.058 Sum_probs=21.5
Q ss_pred CcEEEEEEecCCCchHHHHHHhhc
Q 040913 189 GLSVVAILDSSGFDKTAFAADTYN 212 (425)
Q Consensus 189 ~~~vi~IvG~gGvGKTtLa~~v~~ 212 (425)
...+|.+.|+.|+||||+|+.+.+
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~ 74 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEE 74 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHH
Confidence 467899999999999999999876
Done!