Query 040914
Match_columns 139
No_of_seqs 98 out of 100
Neff 4.3
Searched_HMMs 46136
Date Fri Mar 29 13:04:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040914.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040914hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00213 predicted protein; Pr 100.0 5.9E-40 1.3E-44 245.6 9.7 108 3-121 1-110 (118)
2 PF05617 Prolamin_like: Prolam 99.8 5.8E-20 1.3E-24 123.4 2.3 65 54-118 1-70 (70)
3 PF07172 GRP: Glycine rich pro 89.3 0.22 4.8E-06 36.2 1.6 25 3-30 1-28 (95)
4 PLN00214 putative protein; Pro 89.0 0.5 1.1E-05 35.9 3.3 33 63-97 45-78 (115)
5 cd04660 nsLTP_like nsLTP_like: 45.5 8.7 0.00019 25.8 0.5 57 59-119 5-66 (73)
6 smart00499 AAI Plant lipid tra 39.9 13 0.00028 23.4 0.7 40 55-98 1-43 (79)
7 cd01960 nsLTP1 nsLTP1: Non-spe 37.1 26 0.00057 24.0 1.9 61 54-119 2-76 (89)
8 cd03727 SOCS_ASB8 SOCS (suppre 36.8 24 0.00052 22.5 1.5 32 81-116 7-39 (43)
9 cd00010 AAI_LTSS AAI_LTSS: Alp 29.9 39 0.00085 21.3 1.7 20 74-93 8-28 (63)
10 PF09585 Lin0512_fam: Conserve 27.2 27 0.00059 26.4 0.6 28 80-107 18-46 (113)
11 PF10731 Anophelin: Thrombin i 23.6 78 0.0017 21.9 2.3 25 3-31 1-26 (65)
No 1
>PLN00213 predicted protein; Provisional
Probab=100.00 E-value=5.9e-40 Score=245.58 Aligned_cols=108 Identities=27% Similarity=0.567 Sum_probs=95.2
Q ss_pred chhHHHHHHHHHHHHHHhcccccccCCCCCCCCCC-CCCcchhhhcCCCCchHHHHhhhcccchHHHHHHHHhhCccc-c
Q 040914 3 MTLKHVFFILALTCLIMTNIANATSRNDNLNNNIK-PGNNLAARLEDSRSLTECWNALMELKLCSNEIIIFFLNGQAD-I 80 (139)
Q Consensus 3 m~~k~~~~ll~v~~~i~~~~~~a~~r~~p~~~~~~-~~~~l~~~L~~~~~~~~Cwssl~~v~gC~~EI~~~flnG~~~-L 80 (139)
|++|||++||+|+||+++| ||+++|++.++|+. |+..++ ++ +|+.||||||++++||+.||++++++||++ |
T Consensus 1 m~iknV~~ll~v~cIvvsV--na~lpqf~~~fp~~~p~~~~p-g~---pd~~kCwSSl~~vpGCv~EI~~si~~gkf~~I 74 (118)
T PLN00213 1 MSIKNVFLLLAVLCIIVSV--NAQLPQFPAQLPFLFPFQLIP-GL---PDITKCFSSVMDIPGCIAEISQSIFTGKFGNL 74 (118)
T ss_pred CchHHHHHHHHHHHHHhee--ccCCCCCCCCCCCCCCccCCC-CC---ccHHHHHHHHcCCcchHHHHHHHHHhchhccc
Confidence 8999999999999999999 99999997554442 333344 34 489999999999999999999999999997 9
Q ss_pred ChhccHHHHhhhcCcccccccCCCCChhhhhHHhhhcccCC
Q 040914 81 GPDCCRTIDIITRNCWPTMLTSLGFTAEERNLLRGYCDASS 121 (139)
Q Consensus 81 gp~CC~AI~~i~~~CWP~mfps~pF~~ee~~~LK~~Cs~~~ 121 (139)
|++|||||++.+ +|||+| |.+||+| ++||++|+++.
T Consensus 75 g~aCCKAf~~~d-nCwP~~-P~~P~fP---p~LK~~Cs~i~ 110 (118)
T PLN00213 75 GPACCKAFLDAD-NCIPKI-PFIPFFP---PMLKEQCSRVA 110 (118)
T ss_pred chHHHHHHHhhh-ccccCC-cCCCccc---hHHHHHHhccc
Confidence 999999999965 999995 9999999 79999999964
No 2
>PF05617 Prolamin_like: Prolamin-like; InterPro: IPR008502 This entry consists of several proteins of unknown function found exclusively in Arabidopsis thaliana.
Probab=99.78 E-value=5.8e-20 Score=123.45 Aligned_cols=65 Identities=31% Similarity=0.747 Sum_probs=55.7
Q ss_pred HHHHhhhcccchHHHHHHHHhhCcc-ccChhccHHHHhhhcCcccccccCCCCChhhhh----HHhhhcc
Q 040914 54 ECWNALMELKLCSNEIIIFFLNGQA-DIGPDCCRTIDIITRNCWPTMLTSLGFTAEERN----LLRGYCD 118 (139)
Q Consensus 54 ~Cwssl~~v~gC~~EI~~~flnG~~-~Lgp~CC~AI~~i~~~CWP~mfps~pF~~ee~~----~LK~~Cs 118 (139)
|||+++.++++|++||+.+|++|+. .||++||+||+.++++||+.|+...+++|++.+ .||++|+
T Consensus 1 kc~~~~~~~~~C~~eI~~~~~~g~~~~i~~~CC~~i~~~g~~C~~~l~~~~~~~p~~~~~~r~~l~~~C~ 70 (70)
T PF05617_consen 1 KCLSSCAKSPGCGDEIFNSFFNGNKKNIGPECCKAINKMGKDCHPALFKMFPFTPFFKPLLRDLLWNHCS 70 (70)
T ss_pred ChHHHcCCccchHHHHHHHHHcCCCCCCChHHHHHHHHHhHhHHHHHHHHccCCCCccchhHHHHHhhcC
Confidence 6999999999999999999999985 599999999999999999994444444444446 9999996
No 3
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=89.32 E-value=0.22 Score=36.19 Aligned_cols=25 Identities=28% Similarity=0.360 Sum_probs=14.1
Q ss_pred chhHHHHHH---HHHHHHHHhcccccccCCC
Q 040914 3 MTLKHVFFI---LALTCLIMTNIANATSRND 30 (139)
Q Consensus 3 m~~k~~~~l---l~v~~~i~~~~~~a~~r~~ 30 (139)
|++|.+++| |+++++|+|- ++.|++
T Consensus 1 MaSK~~llL~l~LA~lLlisSe---vaa~~~ 28 (95)
T PF07172_consen 1 MASKAFLLLGLLLAALLLISSE---VAAREL 28 (95)
T ss_pred CchhHHHHHHHHHHHHHHHHhh---hhhHHh
Confidence 779986644 3344445443 455655
No 4
>PLN00214 putative protein; Provisional
Probab=89.05 E-value=0.5 Score=35.94 Aligned_cols=33 Identities=24% Similarity=0.547 Sum_probs=28.7
Q ss_pred cchHHHHHHHHh-hCccccChhccHHHHhhhcCccc
Q 040914 63 KLCSNEIIIFFL-NGQADIGPDCCRTIDIITRNCWP 97 (139)
Q Consensus 63 ~gC~~EI~~~fl-nG~~~Lgp~CC~AI~~i~~~CWP 97 (139)
+-|..||+..++ ||. ...+||+-+...+.+|--
T Consensus 45 ~KCa~EI~a~i~~N~t--~s~~CC~~LVk~GK~CH~ 78 (115)
T PLN00214 45 PKCALDIIAVVFENGT--LIDPCCNDLVKEGKVCHD 78 (115)
T ss_pred HhhHHHHHHHHHcCCC--CchHHHHHHHHHhhHHHH
Confidence 559999999999 565 589999999999999944
No 5
>cd04660 nsLTP_like nsLTP_like: Non-specific lipid-transfer protein (nsLTP)-like subfamily; composed of predominantly uncharacterized proteins with similarity to nsLTPs, including Medicago truncatula MtN5, the root-specific Phaseolus vulgaris PVR3, Antirrhinum majus FIL1, and Lilium longiflorum LIM3. Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes. The MtN5 gene is induced during root nodule development. FIL1 is thought to be important in petal and stamen formation. The LIM3 gene is induced during the early prophase stage of meiosis in lily microsporocytes.
Probab=45.55 E-value=8.7 Score=25.78 Aligned_cols=57 Identities=19% Similarity=0.332 Sum_probs=31.6
Q ss_pred hhcccchHHHHHHHHhhCc--cccChhccHHHHhhhcCcccccccCCC---CChhhhhHHhhhccc
Q 040914 59 LMELKLCSNEIIIFFLNGQ--ADIGPDCCRTIDIITRNCWPTMLTSLG---FTAEERNLLRGYCDA 119 (139)
Q Consensus 59 l~~v~gC~~EI~~~flnG~--~~Lgp~CC~AI~~i~~~CWP~mfps~p---F~~ee~~~LK~~Cs~ 119 (139)
+..+..|.. ++..|. ..-+.+||.+|+.++..|.=....... ....-+.-|=+.|..
T Consensus 5 ~~~L~~C~~----yl~~~~~~~~Ps~~CC~~vk~~~~~C~C~~~~~~~~~~i~~~~a~~Lp~~Cgv 66 (73)
T cd04660 5 LDLLAECQP----YVTGPNPPPPPSRECCAALRRADLPCLCRYKTSLVLQIIDPDKAVYLPAKCGL 66 (73)
T ss_pred HHHHHHHHH----HHcCCCCCCCCCHHHHHHHHcCCcCCEeeccCCCcccccCHHHHHHHHHHcCC
Confidence 344555664 333444 236788999999887778643333221 233334455566644
No 6
>smart00499 AAI Plant lipid transfer protein / seed storage protein / trypsin-alpha amylase inhibitor domain family.
Probab=39.88 E-value=13 Score=23.41 Aligned_cols=40 Identities=23% Similarity=0.541 Sum_probs=25.1
Q ss_pred HHHhhhcccchHHHHHHHHhhC--ccccChhccHHHHhh-hcCcccc
Q 040914 55 CWNALMELKLCSNEIIIFFLNG--QADIGPDCCRTIDII-TRNCWPT 98 (139)
Q Consensus 55 Cwssl~~v~gC~~EI~~~flnG--~~~Lgp~CC~AI~~i-~~~CWP~ 98 (139)
|...+.++.+|..-+. .+ +..-...||..++.+ ...|+=.
T Consensus 1 C~~~~~~~~~c~~~~~----~~~~~~~p~~~CC~~l~~~~~~~C~C~ 43 (79)
T smart00499 1 CGQVLLQLAPCLSYLT----GGSPGAPPSQQCCSQLRGLNSAQCRCL 43 (79)
T ss_pred ChhhhhhHHhhHHHHc----CCCCCCCCchHHHHHHHHhcccCCcch
Confidence 3444445555654332 22 234778999999999 8888654
No 7
>cd01960 nsLTP1 nsLTP1: Non-specific lipid-transfer protein type 1 (nsLTP1) subfamily; Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes. In addition to lipid transport and assembly, nsLTPs also play a key role in the defense of plants against pathogens. There are two closely-related types of nsLTPs, types 1 and 2, which differ in protein sequence, molecular weight, and biological properties. nsLTPs contain an internal hydrophobic cavity, which serves as the binding site for lipids. The hydrophobic cavity accommodates various fatty acid ligands containing from ten to 18 carbon atoms. In general, the cavity is larger in nsLTP1 than in nsLTP2. nsLTP1 proteins are located in extracellular layers and in vacuolar structures. They may be involved in the formation of cutin layers on plant surfaces by transporting cutin monomers. Many nsLTP1 proteins have been characterized as allergens in humans.
Probab=37.14 E-value=26 Score=24.00 Aligned_cols=61 Identities=23% Similarity=0.507 Sum_probs=37.0
Q ss_pred HHHHhhhcccchHHHHHHHHhhCccc-cChhccHHHHhhhc------------CcccccccCC-CCChhhhhHHhhhccc
Q 040914 54 ECWNALMELKLCSNEIIIFFLNGQAD-IGPDCCRTIDIITR------------NCWPTMLTSL-GFTAEERNLLRGYCDA 119 (139)
Q Consensus 54 ~Cwssl~~v~gC~~EI~~~flnG~~~-Lgp~CC~AI~~i~~------------~CWP~mfps~-pF~~ee~~~LK~~Cs~ 119 (139)
+|=..+..+..|..- ++|... -++.||.+++.+.. .|.-...... ++.+.-..-|=+.|.-
T Consensus 2 ~C~~v~~~l~~C~~y-----~~g~~~~Ps~~CC~~v~~l~~~~~t~~~~~~~C~C~~~~~~~~~~i~~~~a~~LP~~C~v 76 (89)
T cd01960 2 SCGQVTSLLAPCLGY-----LTGGGPAPSPACCSGVKSLNGLAKTTADRQAACNCLKSAAAGISGLNPGRAAGLPGKCGV 76 (89)
T ss_pred CHHHHHhhHHhHHHH-----HhCCCCCCChHHhhhhHHHhhccCCCCchhhhhhcccccccccCCCCHHHHHhChHhccc
Confidence 366666777778743 344444 88999999998653 2433333332 2555555566777755
No 8
>cd03727 SOCS_ASB8 SOCS (suppressors of cytokine signaling) box of ASB8-like proteins. ASB family members have a C-terminal SOCS box and an N-terminal ankyrin-related sequence. Human ASB8 is highly transcribed in skeletal muscle and in lung carcinoma cell lines. The general function of the SOCS box is the recruitment of the ubiquitin-transferase system. The SOCS box interacts with Elongins B and C, Cullin-5 or Cullin-2, Rbx-1, and E2. Therefore, SOCS-box-containing proteins probably function as E3 ubiquitin ligases and mediate the degradation of proteins associated through their N-terminal regions.
Probab=36.76 E-value=24 Score=22.46 Aligned_cols=32 Identities=9% Similarity=0.149 Sum_probs=22.8
Q ss_pred ChhccHHHHh-hhcCcccccccCCCCChhhhhHHhhh
Q 040914 81 GPDCCRTIDI-ITRNCWPTMLTSLGFTAEERNLLRGY 116 (139)
Q Consensus 81 gp~CC~AI~~-i~~~CWP~mfps~pF~~ee~~~LK~~ 116 (139)
-.-|..||+. ++.+|.+...+..|... .||+|
T Consensus 7 q~LcR~aiR~~lg~~~l~~aI~~LpLP~----sLK~Y 39 (43)
T cd03727 7 KALARYAVRRSLGVQYLPEAVKQLPLPR----SVKEY 39 (43)
T ss_pred HHHHHHHHHHHHhhhhHHhhcccCCCCH----HHHHH
Confidence 3458888884 45676666568888865 88887
No 9
>cd00010 AAI_LTSS AAI_LTSS: Alpha-Amylase Inhibitors (AAI), Lipid Transfer (LT) and Seed Storage (SS) Protein family; a protein family unique to higher plants that includes cereal-type alpha-amylase inhibitors, lipid transfer proteins, seed storage proteins, and similar proteins. Proteins in this family are known to play important roles, in defending plants from insects and pathogens, lipid transport between intracellular membranes, and nutrient storage. Many proteins of this family have been identified as allergens in humans. These proteins contain a common pattern of eight cysteines that form four disulfide bridges.
Probab=29.94 E-value=39 Score=21.30 Aligned_cols=20 Identities=30% Similarity=0.702 Sum_probs=15.0
Q ss_pred hhCcc-ccChhccHHHHhhhc
Q 040914 74 LNGQA-DIGPDCCRTIDIITR 93 (139)
Q Consensus 74 lnG~~-~Lgp~CC~AI~~i~~ 93 (139)
++|.. .-.+.||.+++.+.+
T Consensus 8 ~~~~~~~Ps~~CC~~l~~~~~ 28 (63)
T cd00010 8 LTGGATAPPSDCCSGLKSVVK 28 (63)
T ss_pred HcCCCCCCChHHHHHHHHHHh
Confidence 44553 488999999999863
No 10
>PF09585 Lin0512_fam: Conserved hypothetical protein (Lin0512_fam); InterPro: IPR011719 This family consists of few members, broadly distributed. It occurs so far in several Firmicutes (twice in Oceanobacillus), one Cyanobacterium, one alpha Proteobacterium, and (with a long prefix) in plants. The function is unknown. The alignment includes a perfectly conserved motif GxGxDxHG near the N terminus.
Probab=27.25 E-value=27 Score=26.41 Aligned_cols=28 Identities=21% Similarity=0.420 Sum_probs=23.6
Q ss_pred cChhccHHHH-hhhcCcccccccCCCCCh
Q 040914 80 IGPDCCRTID-IITRNCWPTMLTSLGFTA 107 (139)
Q Consensus 80 Lgp~CC~AI~-~i~~~CWP~mfps~pF~~ 107 (139)
.-+++++|++ .|.++|.|.|+-..|+..
T Consensus 18 ~TkAA~RAv~DAI~~nslp~l~~~~~~~~ 46 (113)
T PF09585_consen 18 YTKAAVRAVRDAISHNSLPGLFEILGLDL 46 (113)
T ss_pred HHHHHHHHHHHHHhhcchHHHHHHcCCCh
Confidence 5678899997 788999999999888854
No 11
>PF10731 Anophelin: Thrombin inhibitor from mosquito; InterPro: IPR018932 Members of this family are all inhibitors of thrombin, the peptidase that is at the end of the blood coagulation cascade and which creates the clot by cleaving fibrinogen. The interaction between thrombin and fibrinogen involves two different areas of contact - via the thrombin active site and via a second substrate-binding site known as an exosite. The inhibitor acts by blocking the exosite, rather than by interacting with the active site. The inhibitors are from mosquitoes that feed on human blood and which, by inhibiting thrombin, prevent the blood from clotting and keep it flowing.
Probab=23.60 E-value=78 Score=21.88 Aligned_cols=25 Identities=16% Similarity=0.175 Sum_probs=13.1
Q ss_pred chhHHHHHHHHHHHHHHhcccccc-cCCCC
Q 040914 3 MTLKHVFFILALTCLIMTNIANAT-SRNDN 31 (139)
Q Consensus 3 m~~k~~~~ll~v~~~i~~~~~~a~-~r~~p 31 (139)
|+.|.+++-|..+.+++- +| .||.-
T Consensus 1 MA~Kl~vialLC~aLva~----vQ~APQYa 26 (65)
T PF10731_consen 1 MASKLIVIALLCVALVAI----VQSAPQYA 26 (65)
T ss_pred CcchhhHHHHHHHHHHHH----HhcCcccC
Confidence 778876644433334432 33 46664
Done!