Query 040914
Match_columns 139
No_of_seqs 98 out of 100
Neff 4.3
Searched_HMMs 29240
Date Mon Mar 25 21:15:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040914.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040914hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1bwo_A NS-LTP1, nonspecific li 16.1 88 0.003 20.8 2.3 60 55-119 3-75 (90)
2 3c8l_A FTSZ-like protein of un 13.6 45 0.0015 24.5 0.3 27 80-106 22-49 (122)
3 1afh_A Maize nonspecific lipid 12.8 89 0.003 20.9 1.6 60 55-119 4-77 (93)
4 2ebo_A Ebola virus envelope gl 12.6 40 0.0014 22.6 -0.2 9 80-88 48-56 (74)
5 2alg_A Non-specific lipid tran 10.6 1.3E+02 0.0044 20.0 1.8 60 55-119 4-76 (92)
6 1n89_A Lipid transfer protein; 10.5 1.4E+02 0.0047 18.8 1.9 18 79-97 19-36 (67)
7 2knp_A Mcocc-1; disulfide-rich 10.2 48 0.0016 19.0 -0.4 11 93-103 17-27 (33)
8 1ebo_A Ebola virus envelope pr 9.8 56 0.0019 24.0 -0.3 8 80-87 85-92 (131)
9 2ljo_A Non-specific lipid-tran 9.7 1.4E+02 0.0049 20.1 1.8 60 55-119 4-76 (93)
10 1t12_A LTP 1, nonspecific lipi 8.9 1.5E+02 0.0052 19.7 1.7 59 55-119 4-75 (91)
No 1
>1bwo_A NS-LTP1, nonspecific lipid-transfer protein; wheat, lipid binding, crystallography; HET: LPC; 2.10A {Triticum aestivum} SCOP: a.52.1.1 PDB: 1cz2_A* 1gh1_A 1be2_A* 1jtb_A* 1lip_A 1mid_A* 3cee_A* 3gsh_A*
Probab=16.12 E-value=88 Score=20.84 Aligned_cols=60 Identities=13% Similarity=0.405 Sum_probs=38.3
Q ss_pred HHHhhhcccchHHHHHHHHhhCccccChhccHHHHhhhc------------CcccccccCC-CCChhhhhHHhhhccc
Q 040914 55 CWNALMELKLCSNEIIIFFLNGQADIGPDCCRTIDIITR------------NCWPTMLTSL-GFTAEERNLLRGYCDA 119 (139)
Q Consensus 55 Cwssl~~v~gC~~EI~~~flnG~~~Lgp~CC~AI~~i~~------------~CWP~mfps~-pF~~ee~~~LK~~Cs~ 119 (139)
|=+.+.++..|..-+ ..|.. ..++||.+++.+.. .|.-....+. ++.+.-+.-|-+.|.-
T Consensus 3 C~~v~~~L~pCl~y~----~~~~~-Ps~~CC~~lk~l~~~a~t~~dr~~~ClClk~~~~~~~~in~~~A~~LP~~C~v 75 (90)
T 1bwo_A 3 CGHVDSLVRPCLSYV----QGGPG-PSGQCCDGVKNLHNQARSQSDRQSACNCLKGIARGIHNLNEDNARSIPPKCGV 75 (90)
T ss_dssp HHHHHHHHGGGHHHH----TTCSC-CCHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHTTCTTCCHHHHHTHHHHHTC
T ss_pred HHHHHHhhcccHHHH----cCCCC-CCHHHhHHHHHHHhhccCCCCCCccCcCccCchhccCCcCHHHHHHHHHHcCC
Confidence 556666677787554 23333 78899999998752 4553333333 5666666777788865
No 2
>3c8l_A FTSZ-like protein of unknown function; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.22A {Nostoc punctiforme}
Probab=13.65 E-value=45 Score=24.48 Aligned_cols=27 Identities=19% Similarity=0.314 Sum_probs=21.9
Q ss_pred cChhccHHHH-hhhcCcccccccCCCCC
Q 040914 80 IGPDCCRTID-IITRNCWPTMLTSLGFT 106 (139)
Q Consensus 80 Lgp~CC~AI~-~i~~~CWP~mfps~pF~ 106 (139)
.-+++.+|++ .|.++|.|.++...|+.
T Consensus 22 ~TkAA~RAvrDAI~~nslp~~~~~~g~~ 49 (122)
T 3c8l_A 22 PTIAASRAVRNAIAHNALPGVWEVAGLS 49 (122)
T ss_dssp HHHHHHHHHHHHHTTCCCSSHHHHHTCS
T ss_pred HHHHHHHHHHHHHhhhcchhHHHHCCCC
Confidence 4467888887 78899999999888873
No 3
>1afh_A Maize nonspecific lipid transfer protein; lipid-binding protein, molecular modeling,; NMR {Zea mays} SCOP: a.52.1.1 PDB: 1fk0_A* 1fk1_A* 1fk2_A* 1fk3_A* 1fk4_A* 1fk5_A* 1fk6_A* 1fk7_A* 1mzl_A 1mzm_A* 1bv2_A 1rzl_A* 1uva_A* 1uvb_A* 1uvc_A*
Probab=12.75 E-value=89 Score=20.88 Aligned_cols=60 Identities=18% Similarity=0.462 Sum_probs=37.9
Q ss_pred HHHhhhcccchHHHHHHHHhhCccc-cChhccHHHHhhh----------c--CcccccccCC-CCChhhhhHHhhhccc
Q 040914 55 CWNALMELKLCSNEIIIFFLNGQAD-IGPDCCRTIDIIT----------R--NCWPTMLTSL-GFTAEERNLLRGYCDA 119 (139)
Q Consensus 55 Cwssl~~v~gC~~EI~~~flnG~~~-Lgp~CC~AI~~i~----------~--~CWP~mfps~-pF~~ee~~~LK~~Cs~ 119 (139)
|=+.+..+..|..-+ .|... -.++||.+++.+. . .|.-...... +..+.-+.-|-+.|.-
T Consensus 4 C~~v~~~L~pCl~y~-----~~~~~~Ps~~CC~gv~~l~~~a~t~~dr~~~ClC~~~~~~~~~~in~~~A~~LP~~C~v 77 (93)
T 1afh_A 4 CGQVASAIAPCISYA-----RGQGSGPSAGCCSGVRSLNNAARTTADRRAACNCLKNAAAGVSGLNAGNAASIPSKCGV 77 (93)
T ss_dssp SHHHHHHHGGGHHHH-----TTSCCSCCHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHC
T ss_pred hHHHHHhccCcHHHH-----cCCCCCChHHHHHHHHHHHHhhcCCCCCcccCEeeccccccccCcCHHHHHHHHHHcCC
Confidence 555666677777444 34333 6778999999985 2 4443222222 5666667788888966
No 4
>2ebo_A Ebola virus envelope glycoprotein; filovirus, GP2, coat protein; 1.90A {Zaire ebolavirus - mayinga} SCOP: h.3.2.1
Probab=12.58 E-value=40 Score=22.60 Aligned_cols=9 Identities=44% Similarity=1.058 Sum_probs=7.2
Q ss_pred cChhccHHH
Q 040914 80 IGPDCCRTI 88 (139)
Q Consensus 80 Lgp~CC~AI 88 (139)
+||+||--+
T Consensus 48 lgpdc~i~~ 56 (74)
T 2ebo_A 48 LGPDCAIEP 56 (74)
T ss_dssp HGGGGGCCC
T ss_pred cCCccccCH
Confidence 999999543
No 5
>2alg_A Non-specific lipid transfer protein; LTP, NS-LTP, FOOD allergen, lipid transport; HET: DAO P6G; 2.30A {Prunus persica} PDB: 2b5s_A*
Probab=10.59 E-value=1.3e+02 Score=20.04 Aligned_cols=60 Identities=25% Similarity=0.555 Sum_probs=39.1
Q ss_pred HHHhhhcccchHHHHHHHHhhCccccChhccHHHHhhh-------c-----CcccccccCC-CCChhhhhHHhhhccc
Q 040914 55 CWNALMELKLCSNEIIIFFLNGQADIGPDCCRTIDIIT-------R-----NCWPTMLTSL-GFTAEERNLLRGYCDA 119 (139)
Q Consensus 55 Cwssl~~v~gC~~EI~~~flnG~~~Lgp~CC~AI~~i~-------~-----~CWP~mfps~-pF~~ee~~~LK~~Cs~ 119 (139)
|=..+.++..|..-+. .|. ...++||.+++.+. | .|.-...++. ++.+.-+.-|-+.|.-
T Consensus 4 C~~v~~~L~pCl~y~~----~~~-~p~~~CC~~lk~l~~~a~t~~d~~~~ClC~~~~~~~~~~in~~~A~~LP~~Cgv 76 (92)
T 2alg_A 4 CGQVSSSLAPCIPYVR----GGG-AVPPACCNGIRNVNNLARTTPDRQAACNCLKQLSASVPGVNPNNAAALPGKCGV 76 (92)
T ss_dssp HHHHHHHHGGGHHHHH----HCS-CCCHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHTTC
T ss_pred hHHHHHhccCcHHHHc----CCC-CCCHHHHHHHHHHHhhhcccCCCCcCCccccCcccccCccChHHHHHHHHHcCC
Confidence 6666667777876553 332 47789999999875 3 4453333333 5667667778888865
No 6
>1n89_A Lipid transfer protein; lipid transport; HET: PGM; NMR {Triticum turgidum subsp} SCOP: a.52.1.1 PDB: 1tuk_A*
Probab=10.53 E-value=1.4e+02 Score=18.79 Aligned_cols=18 Identities=17% Similarity=0.660 Sum_probs=14.3
Q ss_pred ccChhccHHHHhhhcCccc
Q 040914 79 DIGPDCCRTIDIITRNCWP 97 (139)
Q Consensus 79 ~Lgp~CC~AI~~i~~~CWP 97 (139)
...++||.+++.. ..|.=
T Consensus 19 ~Ps~~CC~~lk~~-~~ClC 36 (67)
T 1n89_A 19 KPSGECCGNLRAQ-QGCFC 36 (67)
T ss_dssp CCCHHHHHHHHHH-SSHHH
T ss_pred CCCHHHHHhhCCC-CCCCC
Confidence 4889999999985 67744
No 7
>2knp_A Mcocc-1; disulfide-rich peptides, cystine knot motif, cytotoxic, melanoma cell LINE, non-hemolytic, seeds extract, unknown function; NMR {Momordica cochinchinensis}
Probab=10.25 E-value=48 Score=18.99 Aligned_cols=11 Identities=36% Similarity=1.105 Sum_probs=8.4
Q ss_pred cCcccccccCC
Q 040914 93 RNCWPTMLTSL 103 (139)
Q Consensus 93 ~~CWP~mfps~ 103 (139)
-+|||.+-|..
T Consensus 17 crcwptvtpgv 27 (33)
T 2knp_A 17 CRCWPTVTPGV 27 (33)
T ss_dssp CCEEECSSTTE
T ss_pred eeeccccCCCe
Confidence 47999987755
No 8
>1ebo_A Ebola virus envelope protein chimera consisting of A fragment of GCN4 zipper cloned...; membrane fusion subunit, viral protein; 3.00A {Ebola virus SP} SCOP: h.3.2.1
Probab=9.77 E-value=56 Score=23.99 Aligned_cols=8 Identities=50% Similarity=1.186 Sum_probs=6.7
Q ss_pred cChhccHH
Q 040914 80 IGPDCCRT 87 (139)
Q Consensus 80 Lgp~CC~A 87 (139)
+||+||--
T Consensus 85 LGPdCcIe 92 (131)
T 1ebo_A 85 LGPDCRIE 92 (131)
T ss_dssp HGGGGGCC
T ss_pred cCCccccC
Confidence 99999943
No 9
>2ljo_A Non-specific lipid-transfer protein 2; lipid transport; NMR {Lens culinaris}
Probab=9.65 E-value=1.4e+02 Score=20.08 Aligned_cols=60 Identities=18% Similarity=0.445 Sum_probs=33.9
Q ss_pred HHHhhhcccchHHHHHHHHhhCccccChhccHHHHhhhc--------Cc----cccc-ccCCCCChhhhhHHhhhccc
Q 040914 55 CWNALMELKLCSNEIIIFFLNGQADIGPDCCRTIDIITR--------NC----WPTM-LTSLGFTAEERNLLRGYCDA 119 (139)
Q Consensus 55 Cwssl~~v~gC~~EI~~~flnG~~~Lgp~CC~AI~~i~~--------~C----WP~m-fps~pF~~ee~~~LK~~Cs~ 119 (139)
|=+.+..+-.|.. |+.|.....+.||..++.+.. +| .-.. -...++...-+.-|=+.|.-
T Consensus 4 C~~v~~~L~pCl~-----Yv~g~~~p~~~CC~gv~~l~~~a~t~~dr~~~C~clk~~a~~~~~in~~~a~~LP~~CgV 76 (93)
T 2ljo_A 4 CGAVTSDLSPCLT-----YLTGGPGPSPQCCGGVKKLLAAANTTPDRQAACNCLKSAAGSITKLNTNNAAALPGKCGV 76 (93)
T ss_dssp SHHHHHHHHHHHH-----HHTTSSCCCHHHHHHHHHHHHSCCSHHHHHHHHHHHHHHGGGCTTCCHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhHHH-----HHcCCCCCCCchhhHHHHHHHHhcCcccHHHHHHhHHhhhhccCCcCHHHHHhhhHhcCC
Confidence 4444445555653 334544588999999988742 22 2211 12234555556677888854
No 10
>1t12_A LTP 1, nonspecific lipid-transfer protein 1; cystein rich protein, lipid transport; NMR {Nicotiana tabacum}
Probab=8.88 E-value=1.5e+02 Score=19.71 Aligned_cols=59 Identities=19% Similarity=0.459 Sum_probs=37.9
Q ss_pred HHHhhhcccchHHHHHHHHhhCccccChhccHHHHhhhc------------CcccccccCC-CCChhhhhHHhhhccc
Q 040914 55 CWNALMELKLCSNEIIIFFLNGQADIGPDCCRTIDIITR------------NCWPTMLTSL-GFTAEERNLLRGYCDA 119 (139)
Q Consensus 55 Cwssl~~v~gC~~EI~~~flnG~~~Lgp~CC~AI~~i~~------------~CWP~mfps~-pF~~ee~~~LK~~Cs~ 119 (139)
|=+.+..+..|..-+ ..|.. -. +||.+++.+.. .|.-....+. +..+.-+.-|=+.|.-
T Consensus 4 C~~v~~~L~pCl~y~----~~~~~-P~-~CC~gv~~l~~~a~t~~dr~~~ClClk~~~~~~~~in~~~A~~LP~~C~v 75 (91)
T 1t12_A 4 CGQVTSNLAPCLAYL----RNTGP-LG-RCCGGVKALVNSARTTEDRQIACTCLKSAAGAISGINLGKAAGLPSTCGV 75 (91)
T ss_dssp HHHHHHHTHHHHHHH----TTSSC-CT-THHHHHHHHHHTTCSTHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHTTC
T ss_pred hHHHHHhccCcHHHH----cCCCC-hH-HHHHHHHHHHhhccCCCCCCccCCCccccccccCCcChhHHHHHHHHcCC
Confidence 666666777777544 23433 45 89999998754 4553332323 6777667788888965
Done!