Query 040914
Match_columns 139
No_of_seqs 98 out of 100
Neff 4.3
Searched_HMMs 13730
Date Mon Mar 25 21:15:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040914.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/040914hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1fk5a_ a.52.1.1 (A:) Plant no 25.1 17 0.0012 23.0 1.9 61 54-119 3-77 (93)
2 d1ppjd2 f.23.11.1 (D:196-241) 12.8 67 0.0049 18.2 2.4 18 3-20 9-26 (46)
3 d1mida_ a.52.1.1 (A:) Plant no 12.6 50 0.0036 20.5 2.0 60 55-119 3-75 (91)
4 d1gvda_ a.4.1.3 (A:) c-Myb, DN 10.0 57 0.0042 18.2 1.4 17 103-119 4-20 (52)
5 d1gv2a2 a.4.1.3 (A:144-190) c- 9.7 61 0.0045 17.8 1.5 17 103-119 2-18 (47)
6 d3cx5d2 f.23.11.1 (D:261-307) 9.6 99 0.0072 17.6 2.4 18 3-20 9-26 (47)
7 d1k8rb_ d.15.1.5 (B:) Protein 7.8 72 0.0052 20.8 1.4 20 59-79 14-33 (95)
8 d1hssa_ a.52.1.2 (A:) 0.19 alp 7.6 75 0.0055 21.4 1.4 34 62-96 13-49 (120)
9 d1w0ta_ a.4.1.4 (A:) DNA-bindi 7.4 87 0.0063 17.3 1.5 17 103-119 3-19 (52)
10 d1g60a_ c.66.1.11 (A:) Methylt 6.6 77 0.0056 21.2 1.1 24 83-106 11-34 (256)
No 1
>d1fk5a_ a.52.1.1 (A:) Plant non-specific lipid-transfer protein (ns-LTP, ns-LTP1) {Maize (Zea mays) [TaxId: 4577]}
Probab=25.15 E-value=17 Score=23.05 Aligned_cols=61 Identities=18% Similarity=0.472 Sum_probs=38.4
Q ss_pred HHHHhhhcccchHHHHHHHHhhCccc-cChhccHHHHhhhc------------Cccccccc-CCCCChhhhhHHhhhccc
Q 040914 54 ECWNALMELKLCSNEIIIFFLNGQAD-IGPDCCRTIDIITR------------NCWPTMLT-SLGFTAEERNLLRGYCDA 119 (139)
Q Consensus 54 ~Cwssl~~v~gC~~EI~~~flnG~~~-Lgp~CC~AI~~i~~------------~CWP~mfp-s~pF~~ee~~~LK~~Cs~ 119 (139)
.|=+.+.++-.|.. |++|... -++.||.+++.+.+ +|.-.... ..++.+.-..-|=..|.-
T Consensus 3 ~C~~v~~~l~pCl~-----Yltg~~~~Ps~~CC~gv~~l~~~a~t~~dr~~lC~cl~~~~~~~~~in~~ra~~LP~~C~v 77 (93)
T d1fk5a_ 3 SCGQVASAIAPCIS-----YARGQGSGPSAGCCSGVRSLNNAARTTADRRAACNCLKNAAAGVSGLNAGNAASIPSKCGV 77 (93)
T ss_dssp CHHHHHHHHGGGHH-----HHTTCSSSCCHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHTTC
T ss_pred CHHHHHHHhhhhHH-----HHhCCCCCCCCchhHHHHHHHHHccCCccHHHHHHhhhhcccccCCcCHHHHHhhhHhcCC
Confidence 35566666677763 3455554 78999999998763 23333222 346666666777888864
No 2
>d1ppjd2 f.23.11.1 (D:196-241) Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor {Cow (Bos taurus) [TaxId: 9913]}
Probab=12.82 E-value=67 Score=18.16 Aligned_cols=18 Identities=28% Similarity=0.344 Sum_probs=12.9
Q ss_pred chhHHHHHHHHHHHHHHh
Q 040914 3 MTLKHVFFILALTCLIMT 20 (139)
Q Consensus 3 m~~k~~~~ll~v~~~i~~ 20 (139)
|.+|.+++|..++.+...
T Consensus 9 mG~Kv~~~l~~l~~l~yy 26 (46)
T d1ppjd2 9 MGLKMLLMMGLLLPLVYA 26 (46)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 788888877766666554
No 3
>d1mida_ a.52.1.1 (A:) Plant non-specific lipid-transfer protein (ns-LTP, ns-LTP1) {Barley (Hordeum vulgare) [TaxId: 4513]}
Probab=12.59 E-value=50 Score=20.55 Aligned_cols=60 Identities=15% Similarity=0.440 Sum_probs=37.3
Q ss_pred HHHhhhcccchHHHHHHHHhhCccccChhccHHHHhhhc------------Cccccccc-CCCCChhhhhHHhhhccc
Q 040914 55 CWNALMELKLCSNEIIIFFLNGQADIGPDCCRTIDIITR------------NCWPTMLT-SLGFTAEERNLLRGYCDA 119 (139)
Q Consensus 55 Cwssl~~v~gC~~EI~~~flnG~~~Lgp~CC~AI~~i~~------------~CWP~mfp-s~pF~~ee~~~LK~~Cs~ 119 (139)
|=+.+..+-.|.. |++|.....+.||.+++.+.. +|.-..-. ..+....-+.-|=+.|.-
T Consensus 3 C~~v~~~l~pCl~-----Yl~g~~~P~~~CC~gv~~L~~~a~t~~d~~~lC~cl~~~~~~~~~in~~ra~~LP~~C~v 75 (91)
T d1mida_ 3 CGQVDSKMKPCLT-----YVQGGPGPSGECCNGVRDLHNQAQSSGDRQTVCNCLKGIARGIHNLNLNNAASIPSKCNV 75 (91)
T ss_dssp HHHHHHHHGGGHH-----HHTTCSCCCHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhhHH-----HHcCCCCCCcchhhhHHHHHHHhcCCCcHHHHHHhhhhhcccCCCcCHHHHHhchHhcCC
Confidence 5566666667763 345655599999999988753 23333221 234555556777888865
No 4
>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=9.95 E-value=57 Score=18.22 Aligned_cols=17 Identities=24% Similarity=0.122 Sum_probs=13.9
Q ss_pred CCCChhhhhHHhhhccc
Q 040914 103 LGFTAEERNLLRGYCDA 119 (139)
Q Consensus 103 ~pF~~ee~~~LK~~Cs~ 119 (139)
-|+++||...|+..-..
T Consensus 4 g~WT~eED~~L~~~v~~ 20 (52)
T d1gvda_ 4 GPWTKEEDQRLIKLVQK 20 (52)
T ss_dssp CSCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 47999999999987554
No 5
>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=9.70 E-value=61 Score=17.78 Aligned_cols=17 Identities=18% Similarity=0.229 Sum_probs=13.4
Q ss_pred CCCChhhhhHHhhhccc
Q 040914 103 LGFTAEERNLLRGYCDA 119 (139)
Q Consensus 103 ~pF~~ee~~~LK~~Cs~ 119 (139)
.+|++||..+|...-..
T Consensus 2 ~~WT~eED~~L~~~v~~ 18 (47)
T d1gv2a2 2 TSWTEEEDRIIYQAHKR 18 (47)
T ss_dssp CCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 47899999999876544
No 6
>d3cx5d2 f.23.11.1 (D:261-307) Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=9.62 E-value=99 Score=17.60 Aligned_cols=18 Identities=28% Similarity=0.327 Sum_probs=13.3
Q ss_pred chhHHHHHHHHHHHHHHh
Q 040914 3 MTLKHVFFILALTCLIMT 20 (139)
Q Consensus 3 m~~k~~~~ll~v~~~i~~ 20 (139)
|++|.++.+..++.+.+.
T Consensus 9 mg~K~~~i~s~l~~~~~y 26 (47)
T d3cx5d2 9 LGLKTVIILSSLYLLSIW 26 (47)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 788888877777666664
No 7
>d1k8rb_ d.15.1.5 (B:) Protein kinase byr2 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}
Probab=7.84 E-value=72 Score=20.76 Aligned_cols=20 Identities=5% Similarity=-0.034 Sum_probs=14.1
Q ss_pred hhcccchHHHHHHHHhhCccc
Q 040914 59 LMELKLCSNEIIIFFLNGQAD 79 (139)
Q Consensus 59 l~~v~gC~~EI~~~flnG~~~ 79 (139)
..++.||.+||+.-.+ .+++
T Consensus 14 ~vni~gC~~ai~~~~L-kK~~ 33 (95)
T d1k8rb_ 14 AVQSRGDYQKTLAIAL-KKFS 33 (95)
T ss_dssp EEECCSCHHHHHHHHH-HHHT
T ss_pred EEEeccCHHHHHHHHH-HhcC
Confidence 5789999999866544 3443
No 8
>d1hssa_ a.52.1.2 (A:) 0.19 alpha-amylase inhibitor {Wheat (Triticum aestivum) [TaxId: 4565]}
Probab=7.61 E-value=75 Score=21.44 Aligned_cols=34 Identities=26% Similarity=0.603 Sum_probs=22.4
Q ss_pred ccchHHHHHHHHhhCcc--c-cChhccHHHHhhhcCcc
Q 040914 62 LKLCSNEIIIFFLNGQA--D-IGPDCCRTIDIITRNCW 96 (139)
Q Consensus 62 v~gC~~EI~~~flnG~~--~-Lgp~CC~AI~~i~~~CW 96 (139)
+++|-..+.+- ..|.. . +-..||+-+..|.+.|+
T Consensus 13 L~~CR~yv~~q-~~G~~~~~~~k~~CC~eLa~i~~~CR 49 (120)
T d1hssa_ 13 LPACRPLLRLQ-CNGSQVPEAVLRDCCQQLAHISEWCR 49 (120)
T ss_dssp CTTHHHHHHHH-TTTCCCCHHHHHHHHHHHHTSCTTTH
T ss_pred cHHHHHHHHHH-hcCCCCcchHHHHHHHHHHhcCcccc
Confidence 34576655443 33332 1 66889999999999886
No 9
>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.40 E-value=87 Score=17.31 Aligned_cols=17 Identities=24% Similarity=0.134 Sum_probs=13.6
Q ss_pred CCCChhhhhHHhhhccc
Q 040914 103 LGFTAEERNLLRGYCDA 119 (139)
Q Consensus 103 ~pF~~ee~~~LK~~Cs~ 119 (139)
-++++||...|+..-..
T Consensus 3 ~~WT~eED~~L~~~v~~ 19 (52)
T d1w0ta_ 3 QAWLWEEDKNLRSGVRK 19 (52)
T ss_dssp CCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 37899999999887555
No 10
>d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]}
Probab=6.62 E-value=77 Score=21.24 Aligned_cols=24 Identities=8% Similarity=0.263 Sum_probs=22.0
Q ss_pred hccHHHHhhhcCcccccccCCCCC
Q 040914 83 DCCRTIDIITRNCWPTMLTSLGFT 106 (139)
Q Consensus 83 ~CC~AI~~i~~~CWP~mfps~pF~ 106 (139)
+|.+.+..+.+++.-.++.++||.
T Consensus 11 Dcle~l~~lpd~sVdliitdPPY~ 34 (256)
T d1g60a_ 11 NCFDFLDQVENKSVQLAVIDPPYN 34 (256)
T ss_dssp CHHHHHHHSCTTCEEEEEECCCCS
T ss_pred cHHHHHhhCcCCCcCEEEECCCCC
Confidence 599999999999999999999995
Done!