BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040915
(104 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2LO1|A Chain A, Nmr Structure Of The Protein Bc008182, A Dnaj-Like
Domain From Homo Sapiens
Length = 71
Score = 50.4 bits (119), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 36/60 (60%), Gaps = 1/60 (1%)
Query: 8 SLYEVLRVEPTTMISEIKMAYQSLAKVYHLDLSGN-GRDFIEIHKTYEMLSDPTARVVYD 66
+ Y+VL V+P E+K AY+ LA YH D + N G F +I + YE+LSD R +YD
Sbjct: 7 TYYDVLGVKPNATQEELKKAYRKLALKYHPDKNPNEGEKFKQISQAYEVLSDAKKRELYD 66
>pdb|2O37|A Chain A, J-Domain Of Sis1 Protein, Hsp40 Co-Chaperone From
Saccharomyces Cerevisiae
Length = 92
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Query: 2 ALGTRGSLYEVLRVEPTTMISEIKMAYQSLAKVYHLDL-SGNGRDFIEIHKTYEMLSDPT 60
A+ LY++L V P+ E+K Y+ A YH D +G+ F EI + +E+L+DP
Sbjct: 3 AMVKETKLYDLLGVSPSANEQELKKGYRKAALKYHPDKPTGDTEKFKEISEAFEILNDPQ 62
Query: 61 ARVVYDM 67
R +YD
Sbjct: 63 KREIYDQ 69
>pdb|2OCH|A Chain A, J-domain Of Dnj-12 From Caenorhabditis Elegans
Length = 73
Score = 47.4 bits (111), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 37/59 (62%), Gaps = 1/59 (1%)
Query: 10 YEVLRVEPTTMISEIKMAYQSLAKVYHLDLSGNGRD-FIEIHKTYEMLSDPTARVVYDM 67
Y+VL V+P +E+K AY+ +A +H D + +G + F +I + YE+LSD R +YD
Sbjct: 11 YDVLGVKPDASDNELKKAYRKMALKFHPDKNPDGAEQFKQISQAYEVLSDEKKRQIYDQ 69
>pdb|1XBL|A Chain A, Nmr Structure Of The J-Domain (Residues 2-76) In The
Escherichia Coli N-Terminal Fragment (Residues 2-108)
Of The Molecular Chaperone Dnaj, 20 Structures
Length = 107
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
Query: 10 YEVLRVEPTTMISEIKMAYQSLAKVYHLDLSGNGRD----FIEIHKTYEMLSDPTARVVY 65
YE+L V T EI+ AY+ LA YH D + ++ F EI + YE+L+D R Y
Sbjct: 6 YEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAAY 65
Query: 66 DM 67
D
Sbjct: 66 DQ 67
>pdb|1BQZ|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli
N-Terminal Fragment (Residues 1-78) Of The Molecular
Chaperone Dnaj, Nmr, 20 Structures
Length = 77
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 34/67 (50%), Gaps = 4/67 (5%)
Query: 5 TRGSLYEVLRVEPTTMISEIKMAYQSLAKVYHLDLSGNGRD----FIEIHKTYEMLSDPT 60
+ YE+L V T EI+ AY+ LA YH D + ++ F EI + YE+L+D
Sbjct: 1 AKQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQ 60
Query: 61 ARVVYDM 67
R YD
Sbjct: 61 KRAAYDQ 67
>pdb|1BQ0|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli
N-Terminal Fragment (Residues 1-104) Of The Molecular
Chaperone Dnaj, Nmr, 20 Structures
Length = 103
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 34/67 (50%), Gaps = 4/67 (5%)
Query: 5 TRGSLYEVLRVEPTTMISEIKMAYQSLAKVYHLDLSGNGRD----FIEIHKTYEMLSDPT 60
+ YE+L V T EI+ AY+ LA YH D + ++ F EI + YE+L+D
Sbjct: 1 AKQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQ 60
Query: 61 ARVVYDM 67
R YD
Sbjct: 61 KRAAYDQ 67
>pdb|2DN9|A Chain A, Solution Structure Of J-Domain From The Dnaj Homolog,
Human Tid1 Protein
Length = 79
Score = 44.7 bits (104), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 34/68 (50%), Gaps = 4/68 (5%)
Query: 4 GTRGSLYEVLRVEPTTMISEIKMAYQSLAKVYHLDLSGNG----RDFIEIHKTYEMLSDP 59
G+ G Y++L V EIK AY LAK YH D + + F ++ + YE+LSD
Sbjct: 4 GSSGDYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSDE 63
Query: 60 TARVVYDM 67
R YD
Sbjct: 64 VKRKQYDA 71
>pdb|2CUG|A Chain A, Solution Structure Of The J Domain Of The Pseudo Dnaj
Protein, Mouse Hypothetical Mkiaa0962
Length = 88
Score = 43.9 bits (102), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 34/60 (56%), Gaps = 3/60 (5%)
Query: 10 YEVLRVEPTTMISEIKMAYQSLAKVYHLDLS---GNGRDFIEIHKTYEMLSDPTARVVYD 66
Y VL V T ++IK AY+ LA+ +H D + G FI+I K YE+LS+ R YD
Sbjct: 20 YRVLGVSRTASQADIKKAYKKLAREWHPDKNKDPGAEDRFIQISKAYEILSNEEKRTNYD 79
>pdb|2KQX|A Chain A, Nmr Structure Of The J-Domain (Residues 2-72) In The
Escherichia Coli Cbpa
Length = 73
Score = 43.1 bits (100), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 35/62 (56%), Gaps = 5/62 (8%)
Query: 10 YEVLRVEPTTMISEIKMAYQSLAKVYHLDLS----GNGRDFIEIHKTYEMLSDPTARVVY 65
Y ++ V+PT + IK AY+ LA+ YH D+S R F E+ + +E+LSD R Y
Sbjct: 8 YAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEAR-FKEVAEAWEVLSDEQRRAEY 66
Query: 66 DM 67
D
Sbjct: 67 DQ 68
>pdb|3LZ8|A Chain A, Structure Of A Putative Chaperone Dnaj From Klebsiella
Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A
Resolution.
pdb|3LZ8|B Chain B, Structure Of A Putative Chaperone Dnaj From Klebsiella
Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A
Resolution
Length = 329
Score = 42.0 bits (97), Expect = 8e-05, Method: Composition-based stats.
Identities = 22/60 (36%), Positives = 33/60 (55%), Gaps = 3/60 (5%)
Query: 10 YEVLRVEPTTMISEIKMAYQSLAKVYHLDLSGNG---RDFIEIHKTYEMLSDPTARVVYD 66
Y +L V+PT + IK AY+ LA+ YH D+S F ++ + +E+L D R YD
Sbjct: 31 YAILGVQPTDDLKTIKTAYRRLARKYHPDVSKENDAEAKFKDLAEAWEVLKDEQRRAEYD 90
>pdb|2CTW|A Chain A, Solution Structure Of J-Domain From Mouse Dnaj Subfamily
C Menber 5
Length = 109
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 39/70 (55%), Gaps = 5/70 (7%)
Query: 2 ALGTRG-SLYEVLRVEPTTMISEIKMAYQSLAKVYHLDLSGNGRD----FIEIHKTYEML 56
+L T G SLY VL ++ +IK +Y+ LA YH D + + + F EI+ + +L
Sbjct: 11 SLSTSGESLYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNAHAIL 70
Query: 57 SDPTARVVYD 66
+D T R +YD
Sbjct: 71 TDATKRNIYD 80
>pdb|2DMX|A Chain A, Solution Structure Of The J Domain Of Dnaj Homolog
Subfamily B Member 8
Length = 92
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 39/81 (48%), Gaps = 17/81 (20%)
Query: 10 YEVLRVEPTTMISEIKMAYQSLAKVYHLDLSGNGRDFIE-----IHKTYEMLSDPTARVV 64
YEVL V+ + +IK AY+ LA +H D + + ++ E + + YE+LSD R +
Sbjct: 12 YEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVLSDSKKRSL 71
Query: 65 YDMSLVSXXXXXXXSFGCLCW 85
YD + GC W
Sbjct: 72 YDRA------------GCDSW 80
>pdb|2LGW|A Chain A, Solution Structure Of The J Domain Of Hsj1a
Length = 99
Score = 40.4 bits (93), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 5/64 (7%)
Query: 8 SLYEVLRVEPTTMISEIKMAYQSLAKVYHLDLSGNGRDFI-----EIHKTYEMLSDPTAR 62
S YE+L V + +IK AY+ A +H D + + ++F E+ + YE+LSD R
Sbjct: 3 SYYEILDVPRSASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHKR 62
Query: 63 VVYD 66
+YD
Sbjct: 63 EIYD 66
>pdb|3APQ|A Chain A, Crystal Structure Of J-Trx1 Fragment Of Erdj5
pdb|3APQ|B Chain B, Crystal Structure Of J-Trx1 Fragment Of Erdj5
Length = 210
Score = 39.7 bits (91), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 4/63 (6%)
Query: 8 SLYEVLRVEPTTMISEIKMAYQSLAKVYHLDLSGNGR----DFIEIHKTYEMLSDPTARV 63
+ Y +L V T EI+ A++ LA H D + N DF++I++ YE+L D R
Sbjct: 3 NFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRK 62
Query: 64 VYD 66
YD
Sbjct: 63 KYD 65
>pdb|3APO|A Chain A, Crystal Structure Of Full-Length Erdj5
Length = 780
Score = 39.3 bits (90), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 4/63 (6%)
Query: 8 SLYEVLRVEPTTMISEIKMAYQSLAKVYHLDLSGNGR----DFIEIHKTYEMLSDPTARV 63
+ Y +L V T EI+ A++ LA H D + N DF++I++ YE+L D R
Sbjct: 22 NFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRK 81
Query: 64 VYD 66
YD
Sbjct: 82 KYD 84
>pdb|2CTP|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily
B Menber 12
Length = 78
Score = 38.5 bits (88), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
Query: 4 GTRGSLYEVLRVEPTTMISEIKMAYQSLAKVYHLDLS---GNGRDFIEIHKTYEMLSDPT 60
G+ G YE+L V ++K AY+ LA +H D + G F I Y +LS+P
Sbjct: 4 GSSGDYYEILGVSRGASDEDLKKAYRRLALKFHPDKNHAPGATEAFKAIGTAYAVLSNPE 63
Query: 61 ARVVYDM 67
R YD
Sbjct: 64 KRKQYDQ 70
>pdb|1HDJ|A Chain A, Human Hsp40 (Hdj-1), Nmr
Length = 77
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Query: 10 YEVLRVEPTTMISEIKMAYQSLAKVYHLDLS---GNGRDFIEIHKTYEMLSDPTARVVYD 66
Y+ L + EIK AY+ A YH D + G F EI + Y++LSDP R ++D
Sbjct: 6 YQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDPRKREIFD 65
>pdb|2EJ7|A Chain A, Solution Structure Of The Dnaj Domain Of The Human
Protein Hcg3, A Hypothetical Protein Tmp_locus_21
Length = 82
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 31/62 (50%), Gaps = 5/62 (8%)
Query: 10 YEVLRVEPTTMISEIKMAYQSLAKVYHLDLSGNG-----RDFIEIHKTYEMLSDPTARVV 64
YEVL V IK AY+ LA +H D + R F ++ + YE+LSD R +
Sbjct: 12 YEVLDVPRQASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVLSDAKKRDI 71
Query: 65 YD 66
YD
Sbjct: 72 YD 73
>pdb|2YUA|A Chain A, Solution Structure Of The Dnaj Domain From Human
Williams- Beuren Syndrome Chromosome Region 18 Protein
Length = 99
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 4/71 (5%)
Query: 5 TRGSLYEVLRVEPTTMISEIKMAYQSLAKVYHLDLSGNGRD----FIEIHKTYEMLSDPT 60
+R +LY++L V T ++IK AY +YH D + + F I + Y +L T
Sbjct: 15 SRTALYDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGSAEAAERFTRISQAYVVLGSAT 74
Query: 61 ARVVYDMSLVS 71
R YD L+S
Sbjct: 75 LRRKYDRGLLS 85
>pdb|2L6L|A Chain A, Solution Structure Of Human J-Protein Co-Chaperone, Dph4
Length = 155
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 34/73 (46%), Gaps = 10/73 (13%)
Query: 6 RGSLYEVLRVEPTTMISEIKMAYQSLAKVYHLDLSGNG----------RDFIEIHKTYEM 55
+ Y +L +P+ IS++K YQ L +YH D + FIEI + +++
Sbjct: 9 KKDWYSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKI 68
Query: 56 LSDPTARVVYDMS 68
L + + YD+
Sbjct: 69 LGNEETKREYDLQ 81
>pdb|2CTR|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily
B Menber 9
Length = 88
Score = 36.2 bits (82), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Query: 10 YEVLRVEPTTMISEIKMAYQSLAKVYHLDLSGNG---RDFIEIHKTYEMLSDPTARVVYD 66
Y++L V + +IK A+ LA YH D + + F EI + YE LSD R YD
Sbjct: 10 YDILGVPKSASERQIKKAFHKLAMKYHPDKNKSPDAEAKFREIAEAYETLSDANRRKEYD 69
>pdb|1WJZ|A Chain A, Soluiotn Structure Of J-Domain Of Mouse Dnaj Like
Protein
Length = 94
Score = 35.8 bits (81), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 33/68 (48%), Gaps = 10/68 (14%)
Query: 10 YEVLRVEPTTMISEIKMAYQSLAKVYHLDLSGNG----------RDFIEIHKTYEMLSDP 59
Y +L +P+ +S++K YQ L +YH D + FIEI + +++L +
Sbjct: 19 YSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNE 78
Query: 60 TARVVYDM 67
+ YD+
Sbjct: 79 ETKKKYDL 86
>pdb|2Y4U|A Chain A, Crystal Structure Of Human P58(Ipk) In Space Group P312
Length = 450
Score = 32.3 bits (72), Expect = 0.066, Method: Composition-based stats.
Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 7/64 (10%)
Query: 10 YEVLRVEPTTMISEIKMAYQSLAKVYHLDLSGNGRD-------FIEIHKTYEMLSDPTAR 62
Y++L V+ EI AY+ LA +H D N + FI+I E+LSDP R
Sbjct: 385 YKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEXR 444
Query: 63 VVYD 66
+D
Sbjct: 445 KKFD 448
>pdb|2Y4T|A Chain A, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|B Chain B, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|C Chain C, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
Length = 450
Score = 32.3 bits (72), Expect = 0.078, Method: Composition-based stats.
Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 7/64 (10%)
Query: 10 YEVLRVEPTTMISEIKMAYQSLAKVYHLDLSGNGRD-------FIEIHKTYEMLSDPTAR 62
Y++L V+ EI AY+ LA +H D N + FI+I E+LSDP R
Sbjct: 385 YKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMR 444
Query: 63 VVYD 66
+D
Sbjct: 445 KKFD 448
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 29.6 bits (65), Expect = 0.46, Method: Composition-based stats.
Identities = 18/40 (45%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 3 LGTRGSLYEVLRVEPTTMISEIKMAYQSLAKVYHLDLSGN 42
L T GSL EVL + ++S + A+ SL K+ H+DLS N
Sbjct: 469 LQTVGSL-EVLILSSCGLLSIDQQAFHSLGKMSHVDLSHN 507
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 26.2 bits (56), Expect = 5.5, Method: Composition-based stats.
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 7 GSLYEVLRVEPTTMISEIKMAYQSLAKVYHLDLSGN 42
GSL E+L + ++S + A+ L V HLDLS N
Sbjct: 475 GSL-EILILSSCNLLSIDQQAFHGLRNVNHLDLSHN 509
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,972,483
Number of Sequences: 62578
Number of extensions: 92410
Number of successful extensions: 186
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 144
Number of HSP's gapped (non-prelim): 27
length of query: 104
length of database: 14,973,337
effective HSP length: 69
effective length of query: 35
effective length of database: 10,655,455
effective search space: 372940925
effective search space used: 372940925
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)