Query 040915
Match_columns 104
No_of_seqs 149 out of 1328
Neff 7.6
Searched_HMMs 46136
Date Fri Mar 29 13:04:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040915.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040915hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0484 DnaJ DnaJ-class molecu 99.9 1.2E-27 2.7E-32 180.2 9.7 68 6-73 3-74 (371)
2 KOG0713 Molecular chaperone (D 99.9 1.7E-24 3.6E-29 160.6 8.5 67 4-70 13-83 (336)
3 KOG0712 Molecular chaperone (D 99.9 3.8E-23 8.3E-28 154.3 8.0 66 6-71 3-69 (337)
4 PRK14288 chaperone protein Dna 99.9 9.3E-23 2E-27 154.7 7.2 65 6-70 2-70 (369)
5 PRK14296 chaperone protein Dna 99.9 2E-22 4.4E-27 153.0 7.5 65 6-70 3-70 (372)
6 PTZ00037 DnaJ_C chaperone prot 99.9 1.8E-22 3.9E-27 155.3 6.9 66 6-71 27-92 (421)
7 PRK14279 chaperone protein Dna 99.9 8.1E-22 1.7E-26 150.6 6.5 65 6-70 8-76 (392)
8 PRK14286 chaperone protein Dna 99.9 1.5E-21 3.2E-26 148.2 7.6 65 6-70 3-71 (372)
9 PRK14299 chaperone protein Dna 99.9 6.2E-21 1.3E-25 140.8 10.6 66 6-71 3-71 (291)
10 PRK14298 chaperone protein Dna 99.8 1.6E-21 3.5E-26 148.3 7.1 67 4-70 2-71 (377)
11 PRK14291 chaperone protein Dna 99.8 8.5E-21 1.8E-25 144.5 9.9 66 6-71 2-70 (382)
12 PRK14287 chaperone protein Dna 99.8 4E-21 8.6E-26 145.9 7.6 66 6-71 3-71 (371)
13 PRK14283 chaperone protein Dna 99.8 4.3E-21 9.2E-26 145.9 7.5 66 5-70 3-71 (378)
14 PRK14282 chaperone protein Dna 99.8 5E-21 1.1E-25 145.2 7.5 66 6-71 3-73 (369)
15 PRK14277 chaperone protein Dna 99.8 5.6E-21 1.2E-25 145.7 7.7 65 6-70 4-72 (386)
16 PRK14276 chaperone protein Dna 99.8 6E-21 1.3E-25 145.2 7.4 66 6-71 3-71 (380)
17 PRK14285 chaperone protein Dna 99.8 7.2E-21 1.6E-25 144.2 7.0 66 6-71 2-71 (365)
18 PRK14280 chaperone protein Dna 99.8 1.2E-20 2.5E-25 143.5 7.5 66 6-71 3-71 (376)
19 PRK14278 chaperone protein Dna 99.8 1E-20 2.2E-25 143.9 7.1 65 7-71 3-70 (378)
20 PRK14294 chaperone protein Dna 99.8 1.3E-20 2.8E-25 142.8 7.6 66 6-71 3-72 (366)
21 PRK14295 chaperone protein Dna 99.8 1.5E-20 3.3E-25 143.5 7.5 62 6-67 8-73 (389)
22 PF00226 DnaJ: DnaJ domain; I 99.8 1.2E-20 2.6E-25 110.4 5.3 59 8-66 1-64 (64)
23 PRK14284 chaperone protein Dna 99.8 1.5E-20 3.3E-25 143.5 7.3 64 7-70 1-68 (391)
24 PRK14301 chaperone protein Dna 99.8 1.6E-20 3.5E-25 142.6 6.9 66 6-71 3-72 (373)
25 PRK14297 chaperone protein Dna 99.8 1.7E-20 3.7E-25 142.7 6.7 66 6-71 3-72 (380)
26 KOG0716 Molecular chaperone (D 99.8 2E-20 4.2E-25 135.6 6.1 65 6-70 30-98 (279)
27 PRK10767 chaperone protein Dna 99.8 3.6E-20 7.9E-25 140.5 7.4 65 6-70 3-71 (371)
28 PRK10266 curved DNA-binding pr 99.8 1.4E-19 3E-24 134.4 10.1 64 7-70 4-70 (306)
29 PRK14281 chaperone protein Dna 99.8 3.4E-20 7.3E-25 141.8 6.9 65 7-71 3-71 (397)
30 KOG0715 Molecular chaperone (D 99.8 7.1E-20 1.5E-24 135.1 6.8 66 7-72 43-111 (288)
31 PRK14289 chaperone protein Dna 99.8 9.6E-20 2.1E-24 138.8 7.6 65 6-70 4-72 (386)
32 KOG0717 Molecular chaperone (D 99.8 7.3E-20 1.6E-24 140.3 6.3 67 4-70 5-76 (508)
33 PRK14300 chaperone protein Dna 99.8 9.3E-20 2E-24 138.4 6.8 64 7-70 3-69 (372)
34 PRK14290 chaperone protein Dna 99.8 9.9E-20 2.2E-24 137.9 6.8 65 7-71 3-72 (365)
35 TIGR02349 DnaJ_bact chaperone 99.8 1.1E-19 2.3E-24 137.1 6.9 64 8-71 1-67 (354)
36 PRK14292 chaperone protein Dna 99.8 1.3E-19 2.9E-24 137.4 6.8 65 7-71 2-69 (371)
37 KOG0691 Molecular chaperone (D 99.8 1.7E-19 3.7E-24 133.2 7.1 67 6-72 4-74 (296)
38 PRK14293 chaperone protein Dna 99.8 2.4E-19 5.2E-24 136.2 7.3 65 6-70 2-69 (374)
39 KOG0718 Molecular chaperone (D 99.8 6.6E-19 1.4E-23 135.4 6.8 65 7-71 9-80 (546)
40 PTZ00341 Ring-infected erythro 99.8 8.5E-19 1.9E-23 143.9 7.6 67 5-71 571-640 (1136)
41 smart00271 DnaJ DnaJ molecular 99.8 1E-18 2.3E-23 100.7 5.6 54 7-60 1-59 (60)
42 PHA03102 Small T antigen; Revi 99.8 8.3E-19 1.8E-23 118.9 5.3 66 7-72 5-72 (153)
43 KOG0719 Molecular chaperone (D 99.7 1.9E-18 4.2E-23 123.2 6.1 68 5-72 12-85 (264)
44 cd06257 DnaJ DnaJ domain or J- 99.7 5.2E-18 1.1E-22 96.0 5.7 51 8-58 1-55 (55)
45 KOG0721 Molecular chaperone (D 99.7 1.6E-17 3.4E-22 117.4 6.9 69 5-73 97-169 (230)
46 COG2214 CbpA DnaJ-class molecu 99.7 2.7E-17 5.9E-22 113.5 6.6 66 4-69 3-73 (237)
47 TIGR03835 termin_org_DnaJ term 99.7 6.9E-17 1.5E-21 130.3 7.5 65 7-71 2-69 (871)
48 KOG0624 dsRNA-activated protei 99.7 4.7E-17 1E-21 122.6 6.1 67 4-70 391-464 (504)
49 PRK05014 hscB co-chaperone Hsc 99.7 2.1E-16 4.6E-21 109.0 7.2 66 7-72 1-77 (171)
50 PRK01356 hscB co-chaperone Hsc 99.7 2.4E-16 5.2E-21 108.3 7.3 66 7-72 2-76 (166)
51 PRK03578 hscB co-chaperone Hsc 99.6 9.4E-16 2E-20 106.3 7.7 69 4-72 3-82 (176)
52 PRK00294 hscB co-chaperone Hsc 99.6 1.4E-15 3.1E-20 105.1 7.8 68 5-72 2-80 (173)
53 PHA02624 large T antigen; Prov 99.6 8.8E-16 1.9E-20 122.2 6.3 65 2-66 6-72 (647)
54 PTZ00100 DnaJ chaperone protei 99.6 2.4E-15 5.3E-20 97.7 5.1 52 6-57 64-115 (116)
55 KOG0720 Molecular chaperone (D 99.5 9.8E-15 2.1E-19 112.3 5.6 66 6-71 234-302 (490)
56 KOG0722 Molecular chaperone (D 99.5 1.3E-14 2.8E-19 105.2 3.5 69 5-73 31-102 (329)
57 KOG0714 Molecular chaperone (D 99.5 7.4E-14 1.6E-18 100.4 6.7 65 6-70 2-71 (306)
58 KOG0550 Molecular chaperone (D 99.5 2.7E-14 5.8E-19 109.2 4.6 68 4-71 370-442 (486)
59 PRK09430 djlA Dna-J like membr 99.4 1.8E-13 3.9E-18 100.2 5.0 53 6-58 199-262 (267)
60 PRK01773 hscB co-chaperone Hsc 99.4 1.3E-12 2.9E-17 90.3 7.0 64 7-70 2-76 (173)
61 COG5407 SEC63 Preprotein trans 99.4 9.7E-13 2.1E-17 101.6 5.6 67 6-72 97-172 (610)
62 TIGR00714 hscB Fe-S protein as 99.2 4.1E-11 8.9E-16 81.7 6.8 54 19-72 3-65 (157)
63 KOG1150 Predicted molecular ch 99.1 7.2E-11 1.6E-15 83.2 5.6 62 6-67 52-118 (250)
64 COG5269 ZUO1 Ribosome-associat 99.1 2.2E-10 4.7E-15 84.1 4.9 67 4-70 40-115 (379)
65 KOG0568 Molecular chaperone (D 98.8 7.5E-09 1.6E-13 74.7 5.4 52 7-58 47-102 (342)
66 KOG0723 Molecular chaperone (D 98.8 1.6E-08 3.4E-13 64.6 5.2 51 9-59 58-108 (112)
67 KOG1789 Endocytosis protein RM 98.6 3.9E-08 8.5E-13 82.8 5.2 51 7-57 1281-1336(2235)
68 KOG3192 Mitochondrial J-type c 98.1 3.4E-06 7.3E-11 57.4 4.1 69 3-71 4-83 (168)
69 COG1076 DjlA DnaJ-domain-conta 97.5 7.2E-05 1.6E-09 51.6 2.0 50 7-56 113-173 (174)
70 PF03656 Pam16: Pam16; InterP 97.4 0.00041 8.9E-09 45.9 5.1 53 9-61 60-112 (127)
71 KOG0431 Auxilin-like protein a 97.2 0.00039 8.5E-09 54.6 4.1 41 15-55 396-447 (453)
72 COG1076 DjlA DnaJ-domain-conta 97.0 0.00054 1.2E-08 47.3 2.7 63 8-70 2-75 (174)
73 PF13446 RPT: A repeated domai 93.5 0.19 4.1E-06 28.7 4.0 44 7-57 5-48 (62)
74 PF11833 DUF3353: Protein of u 93.3 0.26 5.7E-06 34.7 5.3 38 16-57 1-38 (194)
75 KOG3442 Uncharacterized conser 92.1 0.53 1.2E-05 31.1 5.1 52 10-61 62-113 (132)
76 KOG0724 Zuotin and related mol 90.6 0.35 7.5E-06 36.3 3.6 49 19-67 4-60 (335)
77 PF14687 DUF4460: Domain of un 87.4 1.7 3.7E-05 28.1 4.6 43 17-59 4-54 (112)
78 COG5552 Uncharacterized conser 85.5 6.1 0.00013 23.9 6.5 61 6-70 2-65 (88)
79 PF10041 DUF2277: Uncharacteri 81.0 9.9 0.00021 23.0 5.7 36 6-41 2-37 (78)
80 PF07709 SRR: Seven Residue Re 73.4 3.3 7.2E-05 16.7 1.5 13 45-57 2-14 (14)
81 PF07739 TipAS: TipAS antibiot 60.5 37 0.00081 20.9 5.4 48 14-66 51-99 (118)
82 cd01388 SOX-TCF_HMG-box SOX-TC 59.7 31 0.00068 19.7 4.9 42 25-67 13-54 (72)
83 PF12434 Malate_DH: Malate deh 53.5 19 0.0004 17.5 2.2 17 21-37 10-26 (28)
84 cd01390 HMGB-UBF_HMG-box HMGB- 48.0 46 0.00099 18.2 4.7 40 27-67 14-53 (66)
85 COG0089 RplW Ribosomal protein 43.8 25 0.00053 22.1 2.3 21 12-32 25-45 (94)
86 cd00084 HMG-box High Mobility 42.6 56 0.0012 17.6 4.9 41 25-66 12-52 (66)
87 PF00505 HMG_box: HMG (high mo 42.3 60 0.0013 17.9 3.7 40 25-66 12-51 (69)
88 cd01389 MATA_HMG-box MATA_HMG- 41.3 71 0.0015 18.4 4.8 41 25-66 13-53 (77)
89 cd01780 PLC_epsilon_RA Ubiquit 39.6 44 0.00095 21.0 2.9 34 6-39 10-43 (93)
90 COG2879 Uncharacterized small 39.3 64 0.0014 18.8 3.4 23 27-49 27-51 (65)
91 CHL00030 rpl23 ribosomal prote 38.4 34 0.00074 21.3 2.3 21 12-32 23-43 (93)
92 PF12725 DUF3810: Protein of u 38.1 98 0.0021 23.4 5.2 54 6-59 81-149 (318)
93 TIGR03636 L23_arch archaeal ri 35.4 42 0.00092 20.1 2.3 20 12-31 18-37 (77)
94 PF15178 TOM_sub5: Mitochondri 32.7 91 0.002 17.1 3.1 23 10-32 2-24 (51)
95 PF00076 RRM_1: RNA recognitio 32.4 39 0.00084 18.2 1.8 22 12-33 3-24 (70)
96 PRK05738 rplW 50S ribosomal pr 31.0 53 0.0012 20.2 2.3 20 12-31 24-43 (92)
97 KOG3960 Myogenic helix-loop-he 30.7 38 0.00082 25.2 1.8 15 43-57 127-141 (284)
98 COG3195 Uncharacterized protei 29.5 1.3E+02 0.0028 21.0 4.2 39 16-54 41-117 (176)
99 PF06767 Sif: Sif protein; In 29.4 86 0.0019 24.1 3.6 41 25-65 44-84 (337)
100 PF08447 PAS_3: PAS fold; Int 27.7 14 0.00031 21.2 -0.7 30 7-40 6-36 (91)
101 PRK14548 50S ribosomal protein 26.8 71 0.0015 19.5 2.3 21 12-32 25-45 (84)
102 PF04282 DUF438: Family of unk 26.4 38 0.00083 20.1 1.1 27 12-38 6-32 (71)
103 PF03820 Mtc: Tricarboxylate c 25.2 84 0.0018 23.8 2.9 25 16-40 45-69 (308)
104 PF00276 Ribosomal_L23: Riboso 25.1 79 0.0017 19.3 2.4 21 12-32 24-44 (91)
105 smart00362 RRM_2 RNA recogniti 24.8 83 0.0018 16.3 2.3 20 12-31 4-23 (72)
106 PF04967 HTH_10: HTH DNA bindi 24.7 24 0.00053 19.6 -0.0 21 12-32 32-52 (53)
107 smart00360 RRM RNA recognition 23.2 92 0.002 16.0 2.2 21 12-32 1-21 (71)
108 PRK10141 DNA-binding transcrip 22.4 1.1E+02 0.0024 19.7 2.8 24 47-70 4-27 (117)
109 PF14893 PNMA: PNMA 21.5 81 0.0018 24.2 2.2 19 12-30 23-41 (331)
110 PF03206 NifW: Nitrogen fixati 21.0 2.4E+02 0.0051 18.0 5.1 35 4-38 12-51 (105)
111 PF14710 Nitr_red_alph_N: Resp 20.2 31 0.00067 18.0 -0.2 21 80-100 16-36 (38)
112 PF04719 TAFII28: hTAFII28-lik 20.0 92 0.002 19.3 1.9 13 19-31 78-90 (90)
No 1
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=1.2e-27 Score=180.23 Aligned_cols=68 Identities=40% Similarity=0.551 Sum_probs=64.2
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCc----cHHHHHHHHHHHHHcCChhHHHHHhhhccccc
Q 040915 6 RGSLYEVLRVEPTTMISEIKMAYQSLAKVYHLDLSG----NGRDFIEIHKTYEMLSDPTARVVYDMSLVSRR 73 (104)
Q Consensus 6 ~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~----~~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~~ 73 (104)
.+|||+||||+++||.+|||+|||+|+++||||+++ ++++|++|++||+|||||++|+.||+++....
T Consensus 3 ~~dyYeiLGV~k~As~~EIKkAYRkLA~kyHPD~n~g~~~AeeKFKEI~eAYEVLsD~eKRa~YD~fG~~~~ 74 (371)
T COG0484 3 KRDYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNPGDKEAEEKFKEINEAYEVLSDPEKRAAYDQFGHAGF 74 (371)
T ss_pred ccchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHhhccCcccc
Confidence 689999999999999999999999999999999988 27899999999999999999999999999644
No 2
>KOG0713 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=1.7e-24 Score=160.57 Aligned_cols=67 Identities=39% Similarity=0.506 Sum_probs=63.7
Q ss_pred CCccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc----HHHHHHHHHHHHHcCChhHHHHHhhhcc
Q 040915 4 GTRGSLYEVLRVEPTTMISEIKMAYQSLAKVYHLDLSGN----GRDFIEIHKTYEMLSDPTARVVYDMSLV 70 (104)
Q Consensus 4 ~~~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~----~~~f~~i~~Ay~~L~d~~~R~~YD~~~~ 70 (104)
...+|||+||||+++|+..+||+|||+||+++|||+|++ .+.|+.|+.||+|||||.+|+.||.+|.
T Consensus 13 ~~~rDfYelLgV~k~Asd~eIKkAYRKLALk~HPDkNpddp~A~e~F~~in~AYEVLsDpekRk~YD~~GE 83 (336)
T KOG0713|consen 13 LAGRDFYELLGVPKNASDQEIKKAYRKLALKYHPDKNPDDPNANEKFKEINAAYEVLSDPEKRKHYDTYGE 83 (336)
T ss_pred hcCCCHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHhhhH
Confidence 346899999999999999999999999999999999987 7799999999999999999999999996
No 3
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=3.8e-23 Score=154.30 Aligned_cols=66 Identities=42% Similarity=0.654 Sum_probs=63.0
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc-HHHHHHHHHHHHHcCChhHHHHHhhhccc
Q 040915 6 RGSLYEVLRVEPTTMISEIKMAYQSLAKVYHLDLSGN-GRDFIEIHKTYEMLSDPTARVVYDMSLVS 71 (104)
Q Consensus 6 ~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~-~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~ 71 (104)
.+.||+||||+++|+.+|||+|||+|+++||||++++ .++|++|.+||+|||||++|++||+++..
T Consensus 3 ~~~~y~il~v~~~As~~eikkayrkla~k~HpDkn~~~~ekfkei~~AyevLsd~ekr~~yD~~g~~ 69 (337)
T KOG0712|consen 3 NTKLYDILGVSPDASEEEIKKAYRKLALKYHPDKNPDAGEKFKEISQAYEVLSDPEKREIYDQYGEE 69 (337)
T ss_pred ccccceeeccCCCcCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHHHHHHHHhhhhh
Confidence 5789999999999999999999999999999999998 67999999999999999999999999973
No 4
>PRK14288 chaperone protein DnaJ; Provisional
Probab=99.88 E-value=9.3e-23 Score=154.67 Aligned_cols=65 Identities=35% Similarity=0.473 Sum_probs=61.3
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCc----cHHHHHHHHHHHHHcCChhHHHHHhhhcc
Q 040915 6 RGSLYEVLRVEPTTMISEIKMAYQSLAKVYHLDLSG----NGRDFIEIHKTYEMLSDPTARVVYDMSLV 70 (104)
Q Consensus 6 ~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~----~~~~f~~i~~Ay~~L~d~~~R~~YD~~~~ 70 (104)
..|||+||||+++||.++||+|||+|+++||||+++ +.++|++|++||+||+||.+|..||+++.
T Consensus 2 ~~dyY~vLgv~~~As~~eIkkayrkla~k~HPD~~~~~~~a~~~f~~i~~AYevLsd~~kR~~YD~~G~ 70 (369)
T PRK14288 2 ELSYYEILEVEKHSNQETIKKSYRKLALKYHPDRNAGDKEAEEKFKLINEAYGVLSDEKKRALYDRYGK 70 (369)
T ss_pred CCChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHHhccHHHHHHHHHhcc
Confidence 479999999999999999999999999999999876 26799999999999999999999999886
No 5
>PRK14296 chaperone protein DnaJ; Provisional
Probab=99.87 E-value=2e-22 Score=152.98 Aligned_cols=65 Identities=37% Similarity=0.502 Sum_probs=61.3
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc---HHHHHHHHHHHHHcCChhHHHHHhhhcc
Q 040915 6 RGSLYEVLRVEPTTMISEIKMAYQSLAKVYHLDLSGN---GRDFIEIHKTYEMLSDPTARVVYDMSLV 70 (104)
Q Consensus 6 ~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~---~~~f~~i~~Ay~~L~d~~~R~~YD~~~~ 70 (104)
..|||+||||+++|+.++||+|||+|+++||||++++ .++|++|++||+||+||.+|+.||+++.
T Consensus 3 ~~dyY~~Lgv~~~a~~~eik~ayrkla~~~HPD~n~~~~a~~~F~~i~~AyevLsD~~KR~~YD~~G~ 70 (372)
T PRK14296 3 KKDYYEVLGVSKTASEQEIRQAYRKLAKQYHPDLNKSPDAHDKMVEINEAADVLLDKDKRKQYDQFGH 70 (372)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHhcCHHHhhhhhhccc
Confidence 4799999999999999999999999999999998753 6799999999999999999999999876
No 6
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=99.87 E-value=1.8e-22 Score=155.30 Aligned_cols=66 Identities=42% Similarity=0.587 Sum_probs=63.1
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHcCChhHHHHHhhhccc
Q 040915 6 RGSLYEVLRVEPTTMISEIKMAYQSLAKVYHLDLSGNGRDFIEIHKTYEMLSDPTARVVYDMSLVS 71 (104)
Q Consensus 6 ~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~ 71 (104)
..|||+||||+++||.++||+|||+|+++||||++++.++|++|++||+||+||.+|..||.++..
T Consensus 27 ~~d~Y~vLGV~~~As~~eIKkAYrkla~k~HPDk~~~~e~F~~i~~AYevLsD~~kR~~YD~~G~~ 92 (421)
T PTZ00037 27 NEKLYEVLNLSKDCTTSEIKKAYRKLAIKHHPDKGGDPEKFKEISRAYEVLSDPEKRKIYDEYGEE 92 (421)
T ss_pred chhHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHHhccHHHHHHHhhhcch
Confidence 569999999999999999999999999999999998889999999999999999999999998763
No 7
>PRK14279 chaperone protein DnaJ; Provisional
Probab=99.85 E-value=8.1e-22 Score=150.56 Aligned_cols=65 Identities=31% Similarity=0.454 Sum_probs=61.1
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc----HHHHHHHHHHHHHcCChhHHHHHhhhcc
Q 040915 6 RGSLYEVLRVEPTTMISEIKMAYQSLAKVYHLDLSGN----GRDFIEIHKTYEMLSDPTARVVYDMSLV 70 (104)
Q Consensus 6 ~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~----~~~f~~i~~Ay~~L~d~~~R~~YD~~~~ 70 (104)
.+|||+||||+++|+.++||+|||+|+++||||+++. .++|++|++||+||+||.+|+.||+++.
T Consensus 8 ~~Dyy~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vLsD~~KR~~YD~~G~ 76 (392)
T PRK14279 8 EKDFYKELGVSSDASAEEIKKAYRKLARELHPDANPGDPAAEERFKAVSEAHDVLSDPAKRKEYDETRR 76 (392)
T ss_pred ccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhcchhhhhHHHHhhh
Confidence 4799999999999999999999999999999999863 6799999999999999999999999874
No 8
>PRK14286 chaperone protein DnaJ; Provisional
Probab=99.85 E-value=1.5e-21 Score=148.22 Aligned_cols=65 Identities=37% Similarity=0.516 Sum_probs=61.2
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc----HHHHHHHHHHHHHcCChhHHHHHhhhcc
Q 040915 6 RGSLYEVLRVEPTTMISEIKMAYQSLAKVYHLDLSGN----GRDFIEIHKTYEMLSDPTARVVYDMSLV 70 (104)
Q Consensus 6 ~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~----~~~f~~i~~Ay~~L~d~~~R~~YD~~~~ 70 (104)
..|||+||||+++|+.++||+|||+|+++||||+++. .++|++|++||+||+||.+|..||+++.
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~ 71 (372)
T PRK14286 3 ERSYYDILGVSKSANDEEIKSAYRKLAIKYHPDKNKGNKESEEKFKEATEAYEILRDPKKRQAYDQFGK 71 (372)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhccHHHHHHHHHhCc
Confidence 4799999999999999999999999999999999763 6799999999999999999999999876
No 9
>PRK14299 chaperone protein DnaJ; Provisional
Probab=99.85 E-value=6.2e-21 Score=140.77 Aligned_cols=66 Identities=35% Similarity=0.569 Sum_probs=61.8
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc---HHHHHHHHHHHHHcCChhHHHHHhhhccc
Q 040915 6 RGSLYEVLRVEPTTMISEIKMAYQSLAKVYHLDLSGN---GRDFIEIHKTYEMLSDPTARVVYDMSLVS 71 (104)
Q Consensus 6 ~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~---~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~ 71 (104)
..|||+||||+++|+.++||+|||++++++|||+++. .++|++|++||++|+||.+|..||.++..
T Consensus 3 ~~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~kr~~yD~~g~~ 71 (291)
T PRK14299 3 YKDYYAILGVPKNASQDEIKKAFKKLARKYHPDVNKSPGAEEKFKEINEAYTVLSDPEKRRIYDTYGTT 71 (291)
T ss_pred CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhcCHHHHHHHHhcCCc
Confidence 4799999999999999999999999999999999863 67999999999999999999999998864
No 10
>PRK14298 chaperone protein DnaJ; Provisional
Probab=99.85 E-value=1.6e-21 Score=148.31 Aligned_cols=67 Identities=34% Similarity=0.505 Sum_probs=62.3
Q ss_pred CCccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc---HHHHHHHHHHHHHcCChhHHHHHhhhcc
Q 040915 4 GTRGSLYEVLRVEPTTMISEIKMAYQSLAKVYHLDLSGN---GRDFIEIHKTYEMLSDPTARVVYDMSLV 70 (104)
Q Consensus 4 ~~~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~---~~~f~~i~~Ay~~L~d~~~R~~YD~~~~ 70 (104)
....|||+||||+++|+.++||+|||+|++++|||+++. .++|++|++||+||+||.+|..||+++.
T Consensus 2 ~~~~d~y~iLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~kR~~YD~~G~ 71 (377)
T PRK14298 2 ATTRDYYEILGLSKDASVEDIKKAYRKLAMKYHPDKNKEPDAEEKFKEISEAYAVLSDAEKRAQYDRFGH 71 (377)
T ss_pred CCCCCHHHhhCCCCCCCHHHHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHHHhcchHhhhhhhhcCc
Confidence 345799999999999999999999999999999998754 6799999999999999999999999876
No 11
>PRK14291 chaperone protein DnaJ; Provisional
Probab=99.84 E-value=8.5e-21 Score=144.51 Aligned_cols=66 Identities=39% Similarity=0.627 Sum_probs=61.8
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc---HHHHHHHHHHHHHcCChhHHHHHhhhccc
Q 040915 6 RGSLYEVLRVEPTTMISEIKMAYQSLAKVYHLDLSGN---GRDFIEIHKTYEMLSDPTARVVYDMSLVS 71 (104)
Q Consensus 6 ~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~---~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~ 71 (104)
..|||+||||+++|+.++||+|||+|++++|||+++. .++|++|++||+||+||.+|..||.++..
T Consensus 2 ~~d~Y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vLsd~~kR~~YD~~g~~ 70 (382)
T PRK14291 2 KKDYYEILGVSRNATQEEIKKAYRRLARKYHPDFNKNPEAEEKFKEINEAYQVLSDPEKRKLYDQFGHA 70 (382)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHhcCHHHHHHHhhhccc
Confidence 4799999999999999999999999999999998863 67999999999999999999999998863
No 12
>PRK14287 chaperone protein DnaJ; Provisional
Probab=99.84 E-value=4e-21 Score=145.86 Aligned_cols=66 Identities=35% Similarity=0.605 Sum_probs=61.6
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc---HHHHHHHHHHHHHcCChhHHHHHhhhccc
Q 040915 6 RGSLYEVLRVEPTTMISEIKMAYQSLAKVYHLDLSGN---GRDFIEIHKTYEMLSDPTARVVYDMSLVS 71 (104)
Q Consensus 6 ~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~---~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~ 71 (104)
..|||+||||+++|+.++||+|||+|++++|||+++. +++|++|++||++|+||.+|..||+++..
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~~~~~f~~i~~Ay~~L~d~~kR~~YD~~G~~ 71 (371)
T PRK14287 3 KRDYYEVLGVDRNASVDEVKKAYRKLARKYHPDVNKAPDAEDKFKEVKEAYDTLSDPQKKAHYDQFGHT 71 (371)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhCcHhHHHHHHhhCCc
Confidence 4799999999999999999999999999999998753 67999999999999999999999998863
No 13
>PRK14283 chaperone protein DnaJ; Provisional
Probab=99.84 E-value=4.3e-21 Score=145.94 Aligned_cols=66 Identities=39% Similarity=0.535 Sum_probs=61.8
Q ss_pred CccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCc---cHHHHHHHHHHHHHcCChhHHHHHhhhcc
Q 040915 5 TRGSLYEVLRVEPTTMISEIKMAYQSLAKVYHLDLSG---NGRDFIEIHKTYEMLSDPTARVVYDMSLV 70 (104)
Q Consensus 5 ~~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~---~~~~f~~i~~Ay~~L~d~~~R~~YD~~~~ 70 (104)
...|||+||||+++|+.++||+|||+|++++|||+++ +.++|++|++||++|+||.+|..||.++.
T Consensus 3 ~~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~a~~~f~~i~~Ay~~Lsd~~kR~~YD~~G~ 71 (378)
T PRK14283 3 EKRDYYEVLGVDRNADKKEIKKAYRKLARKYHPDVSEEEGAEEKFKEISEAYAVLSDDEKRQRYDQFGH 71 (378)
T ss_pred CcCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhchhHHHHHHhhhcc
Confidence 3689999999999999999999999999999999975 37799999999999999999999999875
No 14
>PRK14282 chaperone protein DnaJ; Provisional
Probab=99.84 E-value=5e-21 Score=145.16 Aligned_cols=66 Identities=38% Similarity=0.567 Sum_probs=61.5
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc-----HHHHHHHHHHHHHcCChhHHHHHhhhccc
Q 040915 6 RGSLYEVLRVEPTTMISEIKMAYQSLAKVYHLDLSGN-----GRDFIEIHKTYEMLSDPTARVVYDMSLVS 71 (104)
Q Consensus 6 ~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~-----~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~ 71 (104)
..|||+||||+++|+.++||+|||+|+++||||+++. .++|++|++||+||+||.+|..||.++..
T Consensus 3 ~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~g~~ 73 (369)
T PRK14282 3 KKDYYEILGVSRNATQEEIKRAYKRLVKEWHPDRHPENRKEAEQKFKEIQEAYEVLSDPQKRAMYDRFGYV 73 (369)
T ss_pred CCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCccchhHHHHHHHHHHHHHHHhcChhhHHHHhhcCcc
Confidence 4799999999999999999999999999999999753 57999999999999999999999998763
No 15
>PRK14277 chaperone protein DnaJ; Provisional
Probab=99.84 E-value=5.6e-21 Score=145.67 Aligned_cols=65 Identities=43% Similarity=0.645 Sum_probs=61.2
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc----HHHHHHHHHHHHHcCChhHHHHHhhhcc
Q 040915 6 RGSLYEVLRVEPTTMISEIKMAYQSLAKVYHLDLSGN----GRDFIEIHKTYEMLSDPTARVVYDMSLV 70 (104)
Q Consensus 6 ~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~----~~~f~~i~~Ay~~L~d~~~R~~YD~~~~ 70 (104)
..|||+||||+++|+.++||+|||+|+++||||+++. +++|++|++||+||+||.+|..||.++.
T Consensus 4 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~ 72 (386)
T PRK14277 4 KKDYYEILGVDRNATEEEIKKAYRRLAKKYHPDLNPGDKEAEQKFKEINEAYEILSDPQKRAQYDQFGH 72 (386)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHhhcc
Confidence 4799999999999999999999999999999998763 5799999999999999999999999876
No 16
>PRK14276 chaperone protein DnaJ; Provisional
Probab=99.84 E-value=6e-21 Score=145.23 Aligned_cols=66 Identities=35% Similarity=0.567 Sum_probs=61.7
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc---HHHHHHHHHHHHHcCChhHHHHHhhhccc
Q 040915 6 RGSLYEVLRVEPTTMISEIKMAYQSLAKVYHLDLSGN---GRDFIEIHKTYEMLSDPTARVVYDMSLVS 71 (104)
Q Consensus 6 ~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~---~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~ 71 (104)
..|||+||||+++|+.++||+|||+|+++||||++++ .++|++|++||+||+||.+|..||.++..
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~ 71 (380)
T PRK14276 3 NTEYYDRLGVSKDASQDEIKKAYRKLSKKYHPDINKEPGAEEKYKEVQEAYETLSDPQKRAAYDQYGAA 71 (380)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcCHHHHHHHHHHHHHHhcCHhhhhhHhhcCCc
Confidence 4799999999999999999999999999999998754 68999999999999999999999998863
No 17
>PRK14285 chaperone protein DnaJ; Provisional
Probab=99.83 E-value=7.2e-21 Score=144.21 Aligned_cols=66 Identities=32% Similarity=0.428 Sum_probs=61.4
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc----HHHHHHHHHHHHHcCChhHHHHHhhhccc
Q 040915 6 RGSLYEVLRVEPTTMISEIKMAYQSLAKVYHLDLSGN----GRDFIEIHKTYEMLSDPTARVVYDMSLVS 71 (104)
Q Consensus 6 ~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~----~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~ 71 (104)
..|||+||||+++|+.++||+|||+|+++||||+++. .++|++|++||+||+||.+|..||.++..
T Consensus 2 ~~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yd~~g~~ 71 (365)
T PRK14285 2 KRDYYEILGLSKGASKDEIKKAYRKIAIKYHPDKNKGNKEAESIFKEATEAYEVLIDDNKRAQYDRFGHT 71 (365)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHcCcchhHHHHhcCcc
Confidence 3799999999999999999999999999999999763 57899999999999999999999998763
No 18
>PRK14280 chaperone protein DnaJ; Provisional
Probab=99.83 E-value=1.2e-20 Score=143.53 Aligned_cols=66 Identities=39% Similarity=0.577 Sum_probs=61.6
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc---HHHHHHHHHHHHHcCChhHHHHHhhhccc
Q 040915 6 RGSLYEVLRVEPTTMISEIKMAYQSLAKVYHLDLSGN---GRDFIEIHKTYEMLSDPTARVVYDMSLVS 71 (104)
Q Consensus 6 ~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~---~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~ 71 (104)
..|||+||||+++|+.++||+|||+|++++|||+++. .++|++|++||+||+||.+|..||.++..
T Consensus 3 ~~~~y~iLgv~~~a~~~eik~ayr~la~~~HpD~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~~ 71 (376)
T PRK14280 3 KRDYYEVLGVSKSASKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDDQKRAQYDQFGHA 71 (376)
T ss_pred CCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhccHhHHHHHHhcCcc
Confidence 3799999999999999999999999999999998753 78999999999999999999999998763
No 19
>PRK14278 chaperone protein DnaJ; Provisional
Probab=99.83 E-value=1e-20 Score=143.91 Aligned_cols=65 Identities=35% Similarity=0.506 Sum_probs=61.1
Q ss_pred cCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc---HHHHHHHHHHHHHcCChhHHHHHhhhccc
Q 040915 7 GSLYEVLRVEPTTMISEIKMAYQSLAKVYHLDLSGN---GRDFIEIHKTYEMLSDPTARVVYDMSLVS 71 (104)
Q Consensus 7 ~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~---~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~ 71 (104)
.|||+||||+++|+.++||+|||+|++++|||++++ .++|++|++||+||+||.+|..||.++..
T Consensus 3 ~d~y~iLgv~~~a~~~eik~ayr~la~~~hpD~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~YD~~G~~ 70 (378)
T PRK14278 3 RDYYGLLGVSRNASDAEIKRAYRKLARELHPDVNPDEEAQEKFKEISVAYEVLSDPEKRRIVDLGGDP 70 (378)
T ss_pred CCcceecCCCCCCCHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHHHHHhchhhhhhhhhccCCc
Confidence 699999999999999999999999999999999865 56899999999999999999999998763
No 20
>PRK14294 chaperone protein DnaJ; Provisional
Probab=99.83 E-value=1.3e-20 Score=142.77 Aligned_cols=66 Identities=36% Similarity=0.501 Sum_probs=61.8
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc----HHHHHHHHHHHHHcCChhHHHHHhhhccc
Q 040915 6 RGSLYEVLRVEPTTMISEIKMAYQSLAKVYHLDLSGN----GRDFIEIHKTYEMLSDPTARVVYDMSLVS 71 (104)
Q Consensus 6 ~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~----~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~ 71 (104)
..|||+||||+++|+.++||+|||+|+++||||+++. .++|++|++||+||+||.+|..||.++..
T Consensus 3 ~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~~f~~~~~Ay~vL~d~~~r~~yD~~G~~ 72 (366)
T PRK14294 3 KRDYYEILGVTRDASEEEIKKSYRKLAMKYHPDRNPGDKEAEELFKEAAEAYEVLSDPKKRGIYDQYGHE 72 (366)
T ss_pred CCChHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHhccHHHHHHHHhhccc
Confidence 5799999999999999999999999999999999863 67999999999999999999999998863
No 21
>PRK14295 chaperone protein DnaJ; Provisional
Probab=99.83 E-value=1.5e-20 Score=143.47 Aligned_cols=62 Identities=39% Similarity=0.574 Sum_probs=58.8
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc----HHHHHHHHHHHHHcCChhHHHHHhh
Q 040915 6 RGSLYEVLRVEPTTMISEIKMAYQSLAKVYHLDLSGN----GRDFIEIHKTYEMLSDPTARVVYDM 67 (104)
Q Consensus 6 ~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~----~~~f~~i~~Ay~~L~d~~~R~~YD~ 67 (104)
..|||+||||+++|+.++||+|||+|+++||||+++. +++|++|++||+||+||.+|..||+
T Consensus 8 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~ 73 (389)
T PRK14295 8 EKDYYKVLGVPKDATEAEIKKAYRKLAREYHPDANKGDAKAEERFKEISEAYDVLSDEKKRKEYDE 73 (389)
T ss_pred ccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchhHHHHHHHHHHHHHHHCchhhHHHHHH
Confidence 4699999999999999999999999999999998763 6799999999999999999999998
No 22
>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Such a structure is shown in the following schematic representation: +------------+-+-------+-----+-----------+--------------------------------+ | N-terminal | | Gly-R | | CXXCXGXG | C-terminal | +------------+-+-------+-----+-----------+--------------------------------+ It is thought that the 'J' domain of DnaJ mediates the interaction with the dnaK protein and consists of four helices, the second of which has a charged surface that includes at least one pair of basic residues that are essential for interaction with the ATPase domain of Hsp70. The J- and CRR-domains are found in many prokaryotic and eukaryotic proteins [], either together or separately. In yeast, J-domains have been classified into 3 groups; the class III proteins are functionally distinct and do not appear to act as molecular chaperones []. ; GO: 0031072 heat shock protein binding; PDB: 2GUZ_C 2L6L_A 1HDJ_A 2EJ7_A 1FPO_C 2CUG_A 2QSA_A 2OCH_A 3BVO_B 3APQ_A ....
Probab=99.82 E-value=1.2e-20 Score=110.40 Aligned_cols=59 Identities=42% Similarity=0.693 Sum_probs=55.5
Q ss_pred CcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc-H----HHHHHHHHHHHHcCChhHHHHHh
Q 040915 8 SLYEVLRVEPTTMISEIKMAYQSLAKVYHLDLSGN-G----RDFIEIHKTYEMLSDPTARVVYD 66 (104)
Q Consensus 8 d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~-~----~~f~~i~~Ay~~L~d~~~R~~YD 66 (104)
|||+||||+++++.++|+++|+++++++|||+.+. . +.|..|++||++|++|.+|+.||
T Consensus 1 ~~y~iLgl~~~~~~~eik~~y~~l~~~~HPD~~~~~~~~~~~~~~~i~~Ay~~L~~~~~R~~YD 64 (64)
T PF00226_consen 1 NPYEILGLPPDASDEEIKKAYRRLSKQYHPDKNSGDEAEAEEKFARINEAYEILSDPERRRRYD 64 (64)
T ss_dssp HHHHHCTSTTTSSHHHHHHHHHHHHHHTSTTTGTSTHHHHHHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred ChHHHCCCCCCCCHHHHHHHHHhhhhccccccchhhhhhhhHHHHHHHHHHHHhCCHHHHHhcC
Confidence 68999999999999999999999999999998544 3 69999999999999999999998
No 23
>PRK14284 chaperone protein DnaJ; Provisional
Probab=99.82 E-value=1.5e-20 Score=143.46 Aligned_cols=64 Identities=38% Similarity=0.492 Sum_probs=60.5
Q ss_pred cCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc----HHHHHHHHHHHHHcCChhHHHHHhhhcc
Q 040915 7 GSLYEVLRVEPTTMISEIKMAYQSLAKVYHLDLSGN----GRDFIEIHKTYEMLSDPTARVVYDMSLV 70 (104)
Q Consensus 7 ~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~----~~~f~~i~~Ay~~L~d~~~R~~YD~~~~ 70 (104)
.|||+||||+++|+.++||+|||+++++||||+++. .++|++|++||+||+||.+|+.||+++.
T Consensus 1 ~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~ 68 (391)
T PRK14284 1 MDYYTILGVSKTASPEEIKKAYRKLAVKYHPDKNPGDAEAEKRFKEVSEAYEVLSDAQKRESYDRYGK 68 (391)
T ss_pred CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhcCHHHHHHHHhccc
Confidence 489999999999999999999999999999999863 6799999999999999999999999876
No 24
>PRK14301 chaperone protein DnaJ; Provisional
Probab=99.82 E-value=1.6e-20 Score=142.63 Aligned_cols=66 Identities=36% Similarity=0.479 Sum_probs=61.5
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc----HHHHHHHHHHHHHcCChhHHHHHhhhccc
Q 040915 6 RGSLYEVLRVEPTTMISEIKMAYQSLAKVYHLDLSGN----GRDFIEIHKTYEMLSDPTARVVYDMSLVS 71 (104)
Q Consensus 6 ~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~----~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~ 71 (104)
..|||+||||+++|+.++||+|||+|++++|||+++. +++|++|++||+||+||.+|..||.++..
T Consensus 3 ~~~~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~g~~ 72 (373)
T PRK14301 3 QRDYYEVLGVSRDASEDEIKKAYRKLALQYHPDRNPDNPEAEQKFKEAAEAYEVLRDAEKRARYDRFGHA 72 (373)
T ss_pred CCChHHhcCCCCCCCHHHHHHHHHHHHHHhCCCcCCCChHHHHHHHHHHHHHHHhcchhhhhhhhhcccc
Confidence 4799999999999999999999999999999999763 56999999999999999999999998763
No 25
>PRK14297 chaperone protein DnaJ; Provisional
Probab=99.82 E-value=1.7e-20 Score=142.72 Aligned_cols=66 Identities=36% Similarity=0.523 Sum_probs=61.5
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc----HHHHHHHHHHHHHcCChhHHHHHhhhccc
Q 040915 6 RGSLYEVLRVEPTTMISEIKMAYQSLAKVYHLDLSGN----GRDFIEIHKTYEMLSDPTARVVYDMSLVS 71 (104)
Q Consensus 6 ~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~----~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~ 71 (104)
..|||+||||+++|+.++||+|||+|+++||||+++. +++|++|++||+||+||.+|..||+++..
T Consensus 3 ~~d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~G~~ 72 (380)
T PRK14297 3 SKDYYEVLGLEKGASDDEIKKAFRKLAIKYHPDKNKGNKEAEEKFKEINEAYQVLSDPQKKAQYDQFGTA 72 (380)
T ss_pred CCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcCHhhhCchhhcCcc
Confidence 3799999999999999999999999999999998863 67999999999999999999999998763
No 26
>KOG0716 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=2e-20 Score=135.57 Aligned_cols=65 Identities=46% Similarity=0.634 Sum_probs=61.4
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc----HHHHHHHHHHHHHcCChhHHHHHhhhcc
Q 040915 6 RGSLYEVLRVEPTTMISEIKMAYQSLAKVYHLDLSGN----GRDFIEIHKTYEMLSDPTARVVYDMSLV 70 (104)
Q Consensus 6 ~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~----~~~f~~i~~Ay~~L~d~~~R~~YD~~~~ 70 (104)
..++|+||||+++|+.++||++||++++++|||++++ .++|++||+||+||+||.+|..||.++.
T Consensus 30 ~~~LYdVLgl~k~at~d~IKKaYR~L~~k~HPD~~gd~P~~~dkf~eIN~Ay~ILsD~~kR~~YD~~g~ 98 (279)
T KOG0716|consen 30 RLDLYDVLGLPKTATKDEIKKAYRKLALKYHPDKNGDNPEATDKFKEINTAYAILSDPTKRNVYDEYGE 98 (279)
T ss_pred hhHHHHHhCCCcccchHHHHHHHHHHHHHhCCCcCCCCchhHHHHHHHHHHHHHhcChhhhhhHHHhhh
Confidence 5679999999999999999999999999999998776 6799999999999999999999999976
No 27
>PRK10767 chaperone protein DnaJ; Provisional
Probab=99.81 E-value=3.6e-20 Score=140.48 Aligned_cols=65 Identities=42% Similarity=0.578 Sum_probs=61.1
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc----HHHHHHHHHHHHHcCChhHHHHHhhhcc
Q 040915 6 RGSLYEVLRVEPTTMISEIKMAYQSLAKVYHLDLSGN----GRDFIEIHKTYEMLSDPTARVVYDMSLV 70 (104)
Q Consensus 6 ~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~----~~~f~~i~~Ay~~L~d~~~R~~YD~~~~ 70 (104)
..|||+||||+++|+.++||+|||+|++++|||+++. .++|++|++||++|+||.+|..||.++.
T Consensus 3 ~~d~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~g~ 71 (371)
T PRK10767 3 KRDYYEVLGVSRNASEDEIKKAYRKLAMKYHPDRNPGDKEAEEKFKEIKEAYEVLSDPQKRAAYDQYGH 71 (371)
T ss_pred CCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCcHHHHHHHHHHHHHHHHhcchhhhhHhhhccc
Confidence 4799999999999999999999999999999999763 5799999999999999999999999876
No 28
>PRK10266 curved DNA-binding protein CbpA; Provisional
Probab=99.81 E-value=1.4e-19 Score=134.40 Aligned_cols=64 Identities=36% Similarity=0.585 Sum_probs=60.3
Q ss_pred cCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc---HHHHHHHHHHHHHcCChhHHHHHhhhcc
Q 040915 7 GSLYEVLRVEPTTMISEIKMAYQSLAKVYHLDLSGN---GRDFIEIHKTYEMLSDPTARVVYDMSLV 70 (104)
Q Consensus 7 ~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~---~~~f~~i~~Ay~~L~d~~~R~~YD~~~~ 70 (104)
.|||+||||+++++.++||+|||+|++++|||+++. .++|++|++||++|+||.+|..||.++.
T Consensus 4 ~d~y~~Lgv~~~a~~~eik~ayr~la~k~HPD~~~~~~~~~~f~~i~~Ay~~L~~~~kr~~yD~~g~ 70 (306)
T PRK10266 4 KDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAEYDQLWQ 70 (306)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhhhHHHHHHHHHhhc
Confidence 699999999999999999999999999999998753 7799999999999999999999999764
No 29
>PRK14281 chaperone protein DnaJ; Provisional
Probab=99.81 E-value=3.4e-20 Score=141.84 Aligned_cols=65 Identities=37% Similarity=0.493 Sum_probs=61.2
Q ss_pred cCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc----HHHHHHHHHHHHHcCChhHHHHHhhhccc
Q 040915 7 GSLYEVLRVEPTTMISEIKMAYQSLAKVYHLDLSGN----GRDFIEIHKTYEMLSDPTARVVYDMSLVS 71 (104)
Q Consensus 7 ~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~----~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~ 71 (104)
.|||+||||+++|+.++||+|||+|++++|||+++. .++|++|++||++|+||.+|..||.++..
T Consensus 3 ~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~g~~ 71 (397)
T PRK14281 3 RDYYEVLGVSRSADKDEIKKAYRKLALKYHPDKNPDNKEAEEHFKEVNEAYEVLSNDDKRRRYDQFGHA 71 (397)
T ss_pred CChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhhhhhhhhhhhhccch
Confidence 699999999999999999999999999999998864 57999999999999999999999998763
No 30
>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=7.1e-20 Score=135.13 Aligned_cols=66 Identities=39% Similarity=0.626 Sum_probs=61.9
Q ss_pred cCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc---HHHHHHHHHHHHHcCChhHHHHHhhhcccc
Q 040915 7 GSLYEVLRVEPTTMISEIKMAYQSLAKVYHLDLSGN---GRDFIEIHKTYEMLSDPTARVVYDMSLVSR 72 (104)
Q Consensus 7 ~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~---~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~ 72 (104)
.|||+||||+++|+..|||+||++|+++||||.+.. .++|++|.+||+||+|+++|+.||..+...
T Consensus 43 ~d~Y~vLgv~~~At~~EIK~Af~~LaKkyHPD~n~~~~a~~kF~eI~~AYEiLsd~eKR~~YD~~~~~~ 111 (288)
T KOG0715|consen 43 EDYYKVLGVSRNATLSEIKSAFRKLAKKYHPDVNKDKEASKKFKEISEAYEILSDEEKRQEYDVYGLEQ 111 (288)
T ss_pred cchhhhhCcCCCCCHHHHHHHHHHHHHhhCCCCCCCcchhhHHHHHHHHHHHhcCHHHHHHHHHhhhhc
Confidence 399999999999999999999999999999997654 789999999999999999999999998864
No 31
>PRK14289 chaperone protein DnaJ; Provisional
Probab=99.80 E-value=9.6e-20 Score=138.83 Aligned_cols=65 Identities=38% Similarity=0.533 Sum_probs=61.3
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc----HHHHHHHHHHHHHcCChhHHHHHhhhcc
Q 040915 6 RGSLYEVLRVEPTTMISEIKMAYQSLAKVYHLDLSGN----GRDFIEIHKTYEMLSDPTARVVYDMSLV 70 (104)
Q Consensus 6 ~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~----~~~f~~i~~Ay~~L~d~~~R~~YD~~~~ 70 (104)
..|||+||||+++|+.++||+|||+|++++|||+++. .++|++|++||++|+||.+|..||.++.
T Consensus 4 ~~~~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~yD~~G~ 72 (386)
T PRK14289 4 KRDYYEVLGVSKTATVDEIKKAYRKKAIQYHPDKNPGDKEAEEKFKEAAEAYDVLSDPDKRSRYDQFGH 72 (386)
T ss_pred cCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHHhcc
Confidence 5799999999999999999999999999999999863 6799999999999999999999999875
No 32
>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=7.3e-20 Score=140.29 Aligned_cols=67 Identities=39% Similarity=0.505 Sum_probs=62.4
Q ss_pred CCccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc-----HHHHHHHHHHHHHcCChhHHHHHhhhcc
Q 040915 4 GTRGSLYEVLRVEPTTMISEIKMAYQSLAKVYHLDLSGN-----GRDFIEIHKTYEMLSDPTARVVYDMSLV 70 (104)
Q Consensus 4 ~~~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~-----~~~f~~i~~Ay~~L~d~~~R~~YD~~~~ 70 (104)
...+.||+||||..+++..+||++||+||+++|||++++ +++|+.|+.||+|||||..|..||....
T Consensus 5 ~~~~c~YE~L~v~~~a~d~eik~~YRklALq~HPDknpd~ieeat~~F~~i~aAYeVLSdp~eR~wyd~hre 76 (508)
T KOG0717|consen 5 FKKRCYYEVLGVERDADDDEIKKNYRKLALQYHPDKNPDRIEEATQQFQLIQAAYEVLSDPQERAWYDSHRE 76 (508)
T ss_pred hhhhHHHHHhcccccCCHHHHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHHHHHhcChHhhhhHHHHHH
Confidence 456799999999999999999999999999999999876 7799999999999999999999997655
No 33
>PRK14300 chaperone protein DnaJ; Provisional
Probab=99.80 E-value=9.3e-20 Score=138.41 Aligned_cols=64 Identities=34% Similarity=0.532 Sum_probs=60.5
Q ss_pred cCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc---HHHHHHHHHHHHHcCChhHHHHHhhhcc
Q 040915 7 GSLYEVLRVEPTTMISEIKMAYQSLAKVYHLDLSGN---GRDFIEIHKTYEMLSDPTARVVYDMSLV 70 (104)
Q Consensus 7 ~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~---~~~f~~i~~Ay~~L~d~~~R~~YD~~~~ 70 (104)
.|||+||||+++|+.++||+|||++++++|||+++. +++|++|++||++|+|+.+|..||.++.
T Consensus 3 ~~~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yD~~G~ 69 (372)
T PRK14300 3 QDYYQILGVSKTASQADLKKAYLKLAKQYHPDTTDAKDAEKKFKEINAAYDVLKDEQKRAAYDRFGH 69 (372)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcCHHHHHHHHHHHHHHhhhHhHhhHHHhccc
Confidence 699999999999999999999999999999998753 6799999999999999999999999876
No 34
>PRK14290 chaperone protein DnaJ; Provisional
Probab=99.80 E-value=9.9e-20 Score=137.93 Aligned_cols=65 Identities=37% Similarity=0.577 Sum_probs=60.9
Q ss_pred cCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc-----HHHHHHHHHHHHHcCChhHHHHHhhhccc
Q 040915 7 GSLYEVLRVEPTTMISEIKMAYQSLAKVYHLDLSGN-----GRDFIEIHKTYEMLSDPTARVVYDMSLVS 71 (104)
Q Consensus 7 ~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~-----~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~ 71 (104)
.|||+||||+++|+.++||+|||+|++++|||+++. .++|++|++||++|+||.+|..||.++..
T Consensus 3 ~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~G~~ 72 (365)
T PRK14290 3 KDYYKILGVDRNASQEDIKKAFRELAKKWHPDLHPGNKAEAEEKFKEISEAYEVLSDPQKRRQYDQTGTV 72 (365)
T ss_pred CChhhhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchhHHHHHHHHHHHHHHHhcChhhhhhhcccCCc
Confidence 699999999999999999999999999999998753 57999999999999999999999998763
No 35
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=99.80 E-value=1.1e-19 Score=137.11 Aligned_cols=64 Identities=42% Similarity=0.592 Sum_probs=60.0
Q ss_pred CcccccccCCCCCHHHHHHHHHHHHHHhCCCCCc---cHHHHHHHHHHHHHcCChhHHHHHhhhccc
Q 040915 8 SLYEVLRVEPTTMISEIKMAYQSLAKVYHLDLSG---NGRDFIEIHKTYEMLSDPTARVVYDMSLVS 71 (104)
Q Consensus 8 d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~---~~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~ 71 (104)
|||+||||+++|+.++||+|||++++++|||+++ +.++|++|++||+||+|+.+|..||.++..
T Consensus 1 d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~~ 67 (354)
T TIGR02349 1 DYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNKDKEAEEKFKEINEAYEVLSDPEKRAQYDQFGHA 67 (354)
T ss_pred ChHHhCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHhhChHHHHhhhhcccc
Confidence 7999999999999999999999999999999975 367999999999999999999999998763
No 36
>PRK14292 chaperone protein DnaJ; Provisional
Probab=99.79 E-value=1.3e-19 Score=137.40 Aligned_cols=65 Identities=37% Similarity=0.512 Sum_probs=61.2
Q ss_pred cCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc---HHHHHHHHHHHHHcCChhHHHHHhhhccc
Q 040915 7 GSLYEVLRVEPTTMISEIKMAYQSLAKVYHLDLSGN---GRDFIEIHKTYEMLSDPTARVVYDMSLVS 71 (104)
Q Consensus 7 ~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~---~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~ 71 (104)
+|||+||||+++|+.++||+|||+|++++|||+++. .++|+.|++||+||+||.+|..||.++..
T Consensus 2 ~d~y~~Lgv~~~a~~~~ik~ayr~l~~~~hpD~~~~~~a~~~~~~i~~Ay~vL~d~~~r~~yd~~G~~ 69 (371)
T PRK14292 2 MDYYELLGVSRTASADEIKSAYRKLALKYHPDRNKEKGAAEKFAQINEAYAVLSDAEKRAHYDRFGTA 69 (371)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCChhHHHHHHHHHHHHHHhcchhhhhhHhhcCCc
Confidence 599999999999999999999999999999998864 67999999999999999999999998764
No 37
>KOG0691 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=1.7e-19 Score=133.16 Aligned_cols=67 Identities=33% Similarity=0.480 Sum_probs=63.9
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc----HHHHHHHHHHHHHcCChhHHHHHhhhcccc
Q 040915 6 RGSLYEVLRVEPTTMISEIKMAYQSLAKVYHLDLSGN----GRDFIEIHKTYEMLSDPTARVVYDMSLVSR 72 (104)
Q Consensus 6 ~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~----~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~ 72 (104)
..|||+||||+++++..+|++||+..++++|||++++ .+.|+.|.+||+||+|+..|..||..+...
T Consensus 4 ~~dyY~lLgi~~~at~~eIkKaYr~kaL~~HPDKNp~dP~A~ekFq~L~eAy~VL~D~~~R~~YDk~~k~~ 74 (296)
T KOG0691|consen 4 DTDYYDLLGISEDATDAEIKKAYRKKALQYHPDKNPGDPQAAEKFQELSEAYEVLSDEESRAAYDKLRKSG 74 (296)
T ss_pred cchHHHHhCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhc
Confidence 7899999999999999999999999999999999987 779999999999999999999999999853
No 38
>PRK14293 chaperone protein DnaJ; Provisional
Probab=99.79 E-value=2.4e-19 Score=136.22 Aligned_cols=65 Identities=38% Similarity=0.590 Sum_probs=61.0
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc---HHHHHHHHHHHHHcCChhHHHHHhhhcc
Q 040915 6 RGSLYEVLRVEPTTMISEIKMAYQSLAKVYHLDLSGN---GRDFIEIHKTYEMLSDPTARVVYDMSLV 70 (104)
Q Consensus 6 ~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~---~~~f~~i~~Ay~~L~d~~~R~~YD~~~~ 70 (104)
..|||+||||+++|+.++||+|||++++++|||+++. .++|+.|++||+||+||.+|..||.++.
T Consensus 2 ~~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~a~~~f~~i~~Ay~vL~~~~~R~~yd~~g~ 69 (374)
T PRK14293 2 AADYYEILGVSRDADKDELKRAYRRLARKYHPDVNKEPGAEDRFKEINRAYEVLSDPETRARYDQFGE 69 (374)
T ss_pred CCChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCcCHHHHHHHHHHHHHHHhchHHHHHHhhccc
Confidence 3699999999999999999999999999999998753 7899999999999999999999999876
No 39
>KOG0718 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=6.6e-19 Score=135.35 Aligned_cols=65 Identities=34% Similarity=0.559 Sum_probs=61.1
Q ss_pred cCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc-------HHHHHHHHHHHHHcCChhHHHHHhhhccc
Q 040915 7 GSLYEVLRVEPTTMISEIKMAYQSLAKVYHLDLSGN-------GRDFIEIHKTYEMLSDPTARVVYDMSLVS 71 (104)
Q Consensus 7 ~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~-------~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~ 71 (104)
.+||.+|+|+++||.++|++|||++++.+|||+..+ ++.|+.|.+||+|||||.+|.+||.+|..
T Consensus 9 ~e~Ya~LNlpkdAt~eeI~~AYrr~~~lfHPDkh~dpd~K~~AE~~F~~i~~AyEVLsDp~kRaIYD~~G~q 80 (546)
T KOG0718|consen 9 IELYALLNLPKDATDEEIKKAYRRLSRLFHPDKHTDPDQKKAAEEKFQRIQRAYEVLSDPQKRAIYDNYGEQ 80 (546)
T ss_pred hhHHHHhCCCcccCHHHHHHHHHHHHHhcCCcccCChhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhhc
Confidence 489999999999999999999999999999997663 77999999999999999999999999984
No 40
>PTZ00341 Ring-infected erythrocyte surface antigen; Provisional
Probab=99.77 E-value=8.5e-19 Score=143.86 Aligned_cols=67 Identities=22% Similarity=0.320 Sum_probs=62.5
Q ss_pred CccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc---HHHHHHHHHHHHHcCChhHHHHHhhhccc
Q 040915 5 TRGSLYEVLRVEPTTMISEIKMAYQSLAKVYHLDLSGN---GRDFIEIHKTYEMLSDPTARVVYDMSLVS 71 (104)
Q Consensus 5 ~~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~---~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~ 71 (104)
..++||+||||+++|+..+||+|||+||+++|||+++. .++|+.|++||+||+||.+|..||.+|..
T Consensus 571 ~d~dYYdILGVs~dAS~~EIKKAYRKLAlkyHPDKN~~~~A~ekFq~I~EAYeVLSDp~kRk~YD~~G~~ 640 (1136)
T PTZ00341 571 PDTLFYDILGVGVNADMKEISERYFKLAENYYPPKRSGNEGFHKFKKINEAYQILGDIDKKKMYNKFGYD 640 (1136)
T ss_pred CCCChHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHhhcccc
Confidence 35799999999999999999999999999999999864 67999999999999999999999998874
No 41
>smart00271 DnaJ DnaJ molecular chaperone homology domain.
Probab=99.76 E-value=1e-18 Score=100.65 Aligned_cols=54 Identities=43% Similarity=0.650 Sum_probs=50.7
Q ss_pred cCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCc-----cHHHHHHHHHHHHHcCChh
Q 040915 7 GSLYEVLRVEPTTMISEIKMAYQSLAKVYHLDLSG-----NGRDFIEIHKTYEMLSDPT 60 (104)
Q Consensus 7 ~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~-----~~~~f~~i~~Ay~~L~d~~ 60 (104)
+|||+||||+++++.++|+++|+++++++|||+.+ ..+.|..|++||++|+||.
T Consensus 1 ~~~y~vLgl~~~~~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~~~~~l~~Ay~~L~~~~ 59 (60)
T smart00271 1 TDYYEILGVPRDASLDEIKKAYRKLALKYHPDKNPGDKEEAEEKFKEINEAYEVLSDPE 59 (60)
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHHHcCCC
Confidence 48999999999999999999999999999999987 3779999999999999985
No 42
>PHA03102 Small T antigen; Reviewed
Probab=99.76 E-value=8.3e-19 Score=118.94 Aligned_cols=66 Identities=14% Similarity=0.215 Sum_probs=62.6
Q ss_pred cCcccccccCCCC--CHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHcCChhHHHHHhhhcccc
Q 040915 7 GSLYEVLRVEPTT--MISEIKMAYQSLAKVYHLDLSGNGRDFIEIHKTYEMLSDPTARVVYDMSLVSR 72 (104)
Q Consensus 7 ~d~Y~iLgv~~~a--~~~~Ik~ayr~l~~~~hPD~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~ 72 (104)
..+|+||||+++| |..+||+|||++++++|||++++.++|++|++||++|+++.+|..||..+...
T Consensus 5 ~~l~~vLGl~~~A~~s~~eIKkAYr~la~~~HPDkgg~~e~~k~in~Ay~~L~d~~~r~~yd~~g~~~ 72 (153)
T PHA03102 5 KELMDLLGLPRSAWGNLPLMRKAYLRKCLEFHPDKGGDEEKMKELNTLYKKFRESVKSLRDLDGEEDS 72 (153)
T ss_pred HHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCchhHHHHHHHHHHHHHhhHHHhccccccCCcc
Confidence 4679999999999 99999999999999999999999999999999999999999999999998754
No 43
>KOG0719 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.75 E-value=1.9e-18 Score=123.19 Aligned_cols=68 Identities=37% Similarity=0.516 Sum_probs=62.9
Q ss_pred CccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc------HHHHHHHHHHHHHcCChhHHHHHhhhcccc
Q 040915 5 TRGSLYEVLRVEPTTMISEIKMAYQSLAKVYHLDLSGN------GRDFIEIHKTYEMLSDPTARVVYDMSLVSR 72 (104)
Q Consensus 5 ~~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~------~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~ 72 (104)
..+|+|+||||.++|+..+|++||+++++.+|||++.. .++|+.|+.||.||+|..+|..||.+|...
T Consensus 12 ~~~d~YevLGVer~a~~~eIrkAY~klal~~HPDk~~eed~~ea~~kFq~l~k~y~iLsDeekR~~YDetG~id 85 (264)
T KOG0719|consen 12 NKKDLYEVLGVERDATDKEIRKAYHKLALRLHPDKNHEEDKVEATEKFQQLQKAYQILSDEEKRAVYDETGSID 85 (264)
T ss_pred cccCHHHHhhhcccCCHHHHHHHHHHHHHHhCCCcchhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHhccCCCC
Confidence 45699999999999999999999999999999998842 679999999999999999999999999864
No 44
>cd06257 DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.
Probab=99.74 E-value=5.2e-18 Score=96.04 Aligned_cols=51 Identities=43% Similarity=0.668 Sum_probs=48.2
Q ss_pred CcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc----HHHHHHHHHHHHHcCC
Q 040915 8 SLYEVLRVEPTTMISEIKMAYQSLAKVYHLDLSGN----GRDFIEIHKTYEMLSD 58 (104)
Q Consensus 8 d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~----~~~f~~i~~Ay~~L~d 58 (104)
|||+||||+++++.++|+++|+++++++|||+.+. .+.|..|++||++|+|
T Consensus 1 ~~y~vLgl~~~~~~~~ik~~y~~l~~~~HPD~~~~~~~~~~~~~~l~~Ay~~L~d 55 (55)
T cd06257 1 DYYDILGVPPDASDEEIKKAYRKLALKYHPDKNPDDPEAEEKFKEINEAYEVLSD 55 (55)
T ss_pred ChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcC
Confidence 69999999999999999999999999999998873 7799999999999986
No 45
>KOG0721 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=1.6e-17 Score=117.36 Aligned_cols=69 Identities=30% Similarity=0.430 Sum_probs=63.2
Q ss_pred CccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCC----ccHHHHHHHHHHHHHcCChhHHHHHhhhccccc
Q 040915 5 TRGSLYEVLRVEPTTMISEIKMAYQSLAKVYHLDLS----GNGRDFIEIHKTYEMLSDPTARVVYDMSLVSRR 73 (104)
Q Consensus 5 ~~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~----~~~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~~ 73 (104)
...|+|+||||+|+++..|||+|||+|++++|||+. +.++.|..|++||+.|+|+..|+.|..++....
T Consensus 97 ~~fDPyEILGl~pgas~~eIKkaYR~LSik~HPDK~~~~~~~e~~~~~I~KAY~aLTD~~sreN~ekYG~PDG 169 (230)
T KOG0721|consen 97 QKFDPYEILGLDPGASEKEIKKAYRRLSIKYHPDKQPPEEGDEEFFEAIAKAYQALTDKKSRENWEKYGNPDG 169 (230)
T ss_pred hcCCcHHhhCCCCCCCHHHHHHHHHHhhhhhCCCcCCCcchhHHHHHHHHHHHHHhcchhhHHHHHHhCCCCC
Confidence 356999999999999999999999999999999995 347789999999999999999999999998543
No 46
>COG2214 CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=99.70 E-value=2.7e-17 Score=113.45 Aligned_cols=66 Identities=41% Similarity=0.594 Sum_probs=61.1
Q ss_pred CCccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc-----HHHHHHHHHHHHHcCChhHHHHHhhhc
Q 040915 4 GTRGSLYEVLRVEPTTMISEIKMAYQSLAKVYHLDLSGN-----GRDFIEIHKTYEMLSDPTARVVYDMSL 69 (104)
Q Consensus 4 ~~~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~-----~~~f~~i~~Ay~~L~d~~~R~~YD~~~ 69 (104)
....+||+||||+++++..+|+++||++++++|||+++. .+.|..|++||++|+|+..|..||..+
T Consensus 3 ~~~~~~y~iLgv~~~as~~eik~ayrkla~~~HPD~~~~~~~~a~~~f~~i~~Ay~vLsd~~~r~~yd~~~ 73 (237)
T COG2214 3 SDLLDYYEILGVPPNASLEEIKKAYRKLALKYHPDRNPGDPKVAEEKFKEINEAYEILSDPERRAEYDKIG 73 (237)
T ss_pred hhhhhHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhhCHHHHHHhhhhc
Confidence 456799999999999999999999999999999998774 489999999999999999999999863
No 47
>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ. This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.
Probab=99.68 E-value=6.9e-17 Score=130.32 Aligned_cols=65 Identities=35% Similarity=0.488 Sum_probs=60.6
Q ss_pred cCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc---HHHHHHHHHHHHHcCChhHHHHHhhhccc
Q 040915 7 GSLYEVLRVEPTTMISEIKMAYQSLAKVYHLDLSGN---GRDFIEIHKTYEMLSDPTARVVYDMSLVS 71 (104)
Q Consensus 7 ~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~---~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~ 71 (104)
.|||+||||+++|+..+||++||+|++++|||+++. .++|+.|++||++|+||.+|..||.++..
T Consensus 2 ~DYYeVLGVs~dAS~eEIKKAYRKLAKKyHPDKn~~~eAeekFqeINEAYEVLSDP~KRa~YD~fG~a 69 (871)
T TIGR03835 2 RDYYEVLGIDRDADEQEIKKAFRKLAKKYHPDRNKAPDAASIFAEINEANDVLSNPKKRANYDKYGHD 69 (871)
T ss_pred CChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhCCHHHHHHHhhhccc
Confidence 699999999999999999999999999999998764 56899999999999999999999998763
No 48
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.68 E-value=4.7e-17 Score=122.59 Aligned_cols=67 Identities=31% Similarity=0.471 Sum_probs=61.8
Q ss_pred CCccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc-------HHHHHHHHHHHHHcCChhHHHHHhhhcc
Q 040915 4 GTRGSLYEVLRVEPTTMISEIKMAYQSLAKVYHLDLSGN-------GRDFIEIHKTYEMLSDPTARVVYDMSLV 70 (104)
Q Consensus 4 ~~~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~-------~~~f~~i~~Ay~~L~d~~~R~~YD~~~~ 70 (104)
+.++|||+||||.++|+.-+|.+|||+++.++|||...+ +.+|+-|..|-+||+||++|+.||..-.
T Consensus 391 s~kRDYYKILGVkRnAsKqEI~KAYRKlAqkWHPDNFqdEeEKKkAEKKFIDIAAAKEVLsd~EkRrqFDnGeD 464 (504)
T KOG0624|consen 391 SGKRDYYKILGVKRNASKQEITKAYRKLAQKWHPDNFQDEEEKKKAEKKFIDIAAAKEVLSDPEKRRQFDNGED 464 (504)
T ss_pred hccchHHHHhhhcccccHHHHHHHHHHHHHhcCCccccCHHHHHHHHHhhhhHHHHHHhhcCHHHHhhccCCCC
Confidence 457899999999999999999999999999999996655 5689999999999999999999998766
No 49
>PRK05014 hscB co-chaperone HscB; Provisional
Probab=99.67 E-value=2.1e-16 Score=109.03 Aligned_cols=66 Identities=21% Similarity=0.309 Sum_probs=58.2
Q ss_pred cCcccccccCCC--CCHHHHHHHHHHHHHHhCCCCCcc---------HHHHHHHHHHHHHcCChhHHHHHhhhcccc
Q 040915 7 GSLYEVLRVEPT--TMISEIKMAYQSLAKVYHLDLSGN---------GRDFIEIHKTYEMLSDPTARVVYDMSLVSR 72 (104)
Q Consensus 7 ~d~Y~iLgv~~~--a~~~~Ik~ayr~l~~~~hPD~~~~---------~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~ 72 (104)
+|||+||||++. ++..+|+++|+++++++|||+... .+.+..||+||+||+||.+|..|+..+.+.
T Consensus 1 ~~yf~llgl~~~~~~d~~~L~~~yr~l~~~~HPDk~~~~~~~~~~~a~~~s~~iN~AY~~L~dp~~Ra~Yll~l~g~ 77 (171)
T PRK05014 1 MDYFTLFGLPARYDIDTQLLASRYQELQRQFHPDKFANASERERLLAVQQAATINDAYQTLKHPLKRAEYLLSLHGF 77 (171)
T ss_pred CCHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHCChhHHHHHHHHhcCC
Confidence 489999999996 678999999999999999997542 347899999999999999999999877753
No 50
>PRK01356 hscB co-chaperone HscB; Provisional
Probab=99.66 E-value=2.4e-16 Score=108.33 Aligned_cols=66 Identities=18% Similarity=0.255 Sum_probs=58.4
Q ss_pred cCcccccccCCC--CCHHHHHHHHHHHHHHhCCCCCcc-------HHHHHHHHHHHHHcCChhHHHHHhhhcccc
Q 040915 7 GSLYEVLRVEPT--TMISEIKMAYQSLAKVYHLDLSGN-------GRDFIEIHKTYEMLSDPTARVVYDMSLVSR 72 (104)
Q Consensus 7 ~d~Y~iLgv~~~--a~~~~Ik~ayr~l~~~~hPD~~~~-------~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~ 72 (104)
.|||+||||++. ++..+|+++|+++++++|||+... ...+..|++||+||+||.+|..|+..+.+.
T Consensus 2 ~~yf~llgl~~~f~id~~~L~~aYr~lq~~~HPDk~~~~~~k~~~~~~s~~in~AY~~L~dp~~Ra~YlL~l~g~ 76 (166)
T PRK01356 2 QNYFQLLGLPQEYNIDLKILEKQYFAMQVKYHPDKAKTLQEKEQNLIIASELNNAYSTLKDALKRAEYMLLLQNI 76 (166)
T ss_pred CCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHccCC
Confidence 489999999997 689999999999999999998754 224789999999999999999999888753
No 51
>PRK03578 hscB co-chaperone HscB; Provisional
Probab=99.63 E-value=9.4e-16 Score=106.28 Aligned_cols=69 Identities=16% Similarity=0.231 Sum_probs=59.5
Q ss_pred CCccCcccccccCCC--CCHHHHHHHHHHHHHHhCCCCCcc---------HHHHHHHHHHHHHcCChhHHHHHhhhcccc
Q 040915 4 GTRGSLYEVLRVEPT--TMISEIKMAYQSLAKVYHLDLSGN---------GRDFIEIHKTYEMLSDPTARVVYDMSLVSR 72 (104)
Q Consensus 4 ~~~~d~Y~iLgv~~~--a~~~~Ik~ayr~l~~~~hPD~~~~---------~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~ 72 (104)
+...|||+||||++. ++..+|+++|+++++++|||+... .+.+..||+||++|+||.+|..|...+.+.
T Consensus 3 ~~~~dyf~llglp~~f~~d~~~L~~~yr~lq~~~HPD~~~~~~~~e~~~a~~~s~~iN~AY~tL~~p~~Ra~Yll~l~G~ 82 (176)
T PRK03578 3 SLKDDHFSLFGLPARFALDEAALDAAYRTVQAQVHPDRFAAAGDAEKRVAMQWATRANEAYQTLRDPLKRARYLLHLRGV 82 (176)
T ss_pred CCCCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhCChhhHHHHHHHhcCC
Confidence 346899999999986 578999999999999999997653 234689999999999999999999877753
No 52
>PRK00294 hscB co-chaperone HscB; Provisional
Probab=99.63 E-value=1.4e-15 Score=105.12 Aligned_cols=68 Identities=18% Similarity=0.361 Sum_probs=60.2
Q ss_pred CccCcccccccCCC--CCHHHHHHHHHHHHHHhCCCCCcc---------HHHHHHHHHHHHHcCChhHHHHHhhhcccc
Q 040915 5 TRGSLYEVLRVEPT--TMISEIKMAYQSLAKVYHLDLSGN---------GRDFIEIHKTYEMLSDPTARVVYDMSLVSR 72 (104)
Q Consensus 5 ~~~d~Y~iLgv~~~--a~~~~Ik~ayr~l~~~~hPD~~~~---------~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~ 72 (104)
...|||++|||++. .+..+|+++|+++++++|||+... .+.+..||+||+||+||.+|..|+..+.+.
T Consensus 2 ~~~~~F~l~~l~~~f~id~~~L~~~Yr~Lq~~~HPDk~~~~~~~e~~~a~~~s~~IN~AY~~L~~p~~Ra~YlL~l~g~ 80 (173)
T PRK00294 2 GTPCHFALFDLQPSFRLDLDQLATRYRELAREVHPDRFADAPEREQRLALERSASLNEAYQTLKSPPRRARYLLALSGH 80 (173)
T ss_pred CCCChhhhcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHhCChhhhHHHHHHhcCC
Confidence 36799999999998 568999999999999999998643 347899999999999999999999888754
No 53
>PHA02624 large T antigen; Provisional
Probab=99.61 E-value=8.8e-16 Score=122.16 Aligned_cols=65 Identities=17% Similarity=0.277 Sum_probs=60.5
Q ss_pred CCCCccCcccccccCCCC--CHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHcCChhHHHHHh
Q 040915 2 ALGTRGSLYEVLRVEPTT--MISEIKMAYQSLAKVYHLDLSGNGRDFIEIHKTYEMLSDPTARVVYD 66 (104)
Q Consensus 2 ~~~~~~d~Y~iLgv~~~a--~~~~Ik~ayr~l~~~~hPD~~~~~~~f~~i~~Ay~~L~d~~~R~~YD 66 (104)
+.....++|+||||+++| +.++||+|||++++++|||+.++.++|++|++||++|+|+.+|..|.
T Consensus 6 tree~~elyelLGL~~~A~gs~~eIKkAYRkLAkkyHPDKgGdeekfk~Ln~AYevL~d~~k~~r~~ 72 (647)
T PHA02624 6 SREESKELMDLLGLPMAAWGNLPLMRKAYLRKCKEYHPDKGGDEEKMKRLNSLYKKLQEGVKSARQS 72 (647)
T ss_pred chHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCcHHHHHHHHHHHHHHhcHHHhhhcc
Confidence 344567899999999999 99999999999999999999999999999999999999999999994
No 54
>PTZ00100 DnaJ chaperone protein; Provisional
Probab=99.58 E-value=2.4e-15 Score=97.69 Aligned_cols=52 Identities=21% Similarity=0.316 Sum_probs=49.4
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHcC
Q 040915 6 RGSLYEVLRVEPTTMISEIKMAYQSLAKVYHLDLSGNGRDFIEIHKTYEMLS 57 (104)
Q Consensus 6 ~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~~~~f~~i~~Ay~~L~ 57 (104)
..++|+||||+++++.++|+++||++++++|||+.+..+.|++|++||++|.
T Consensus 64 ~~eAy~ILGv~~~As~~eIkkaYRrLa~~~HPDkgGs~~~~~kIneAyevL~ 115 (116)
T PTZ00100 64 KSEAYKILNISPTASKERIREAHKQLMLRNHPDNGGSTYIASKVNEAKDLLL 115 (116)
T ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHh
Confidence 4689999999999999999999999999999999888999999999999985
No 55
>KOG0720 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.53 E-value=9.8e-15 Score=112.25 Aligned_cols=66 Identities=21% Similarity=0.320 Sum_probs=62.1
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc---HHHHHHHHHHHHHcCChhHHHHHhhhccc
Q 040915 6 RGSLYEVLRVEPTTMISEIKMAYQSLAKVYHLDLSGN---GRDFIEIHKTYEMLSDPTARVVYDMSLVS 71 (104)
Q Consensus 6 ~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~---~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~ 71 (104)
..|+|.+|||+++++.++||+.||+++...||||+.. ++.|+.|+.||++|+|+++|..||..+..
T Consensus 234 ~~daYsvlGl~~d~sd~~lKk~Yrk~A~LVhPDKn~~~~A~Eafk~Lq~Afevig~~~kR~eYd~e~~k 302 (490)
T KOG0720|consen 234 ILDAYSALGLPSDCSDADLKKNYRKKAMLVHPDKNMIPRAEEAFKKLQVAFEVIGDSVKRKEYDLELKK 302 (490)
T ss_pred CCCchhhcCCCCCCCHHHHHHHHHhhceEeCCCccCChhHHHHHHHHHHHHHHhcchhhhhHHHHHHHH
Confidence 6799999999999999999999999999999998754 88999999999999999999999988774
No 56
>KOG0722 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.50 E-value=1.3e-14 Score=105.19 Aligned_cols=69 Identities=33% Similarity=0.470 Sum_probs=63.0
Q ss_pred CccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc---HHHHHHHHHHHHHcCChhHHHHHhhhccccc
Q 040915 5 TRGSLYEVLRVEPTTMISEIKMAYQSLAKVYHLDLSGN---GRDFIEIHKTYEMLSDPTARVVYDMSLVSRR 73 (104)
Q Consensus 5 ~~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~---~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~~ 73 (104)
...|+|+||||.+.++..+|.+|||+|++++|||++.+ .+.|..|.+||++|.|.+.|..||-.+..+.
T Consensus 31 G~enCYdVLgV~Rea~KseIakAYRqLARrhHPDr~r~~e~k~~F~~iAtayeilkd~e~rt~ydyaldhpd 102 (329)
T KOG0722|consen 31 GAENCYDVLGVAREANKSEIAKAYRQLARRHHPDRNRDPESKKLFVKIATAYEILKDNETRTQYDYALDHPD 102 (329)
T ss_pred cchhHHHHhhhhhhccHHHHHHHHHHHHHHhCCcccCCchhhhhhhhhhcccccccchhhHHhHHHHhcCch
Confidence 45799999999999999999999999999999997765 5689999999999999999999999888544
No 57
>KOG0714 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.49 E-value=7.4e-14 Score=100.35 Aligned_cols=65 Identities=35% Similarity=0.531 Sum_probs=60.0
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCccH-----HHHHHHHHHHHHcCChhHHHHHhhhcc
Q 040915 6 RGSLYEVLRVEPTTMISEIKMAYQSLAKVYHLDLSGNG-----RDFIEIHKTYEMLSDPTARVVYDMSLV 70 (104)
Q Consensus 6 ~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~~-----~~f~~i~~Ay~~L~d~~~R~~YD~~~~ 70 (104)
..|+|+||+|.+.|+.++|++||+++++++|||+++.. .+|++|.+||++|+|+.+|..||.++.
T Consensus 2 ~~d~~~~l~i~~~as~~~i~ka~~~~a~~~hpdk~~~~~~~~~~~~~~~~ea~~~ls~~~kr~~~d~~~~ 71 (306)
T KOG0714|consen 2 GKDYYKILGIARSASEEDIKKAYRKLALKYHPDKNPSPKEVAEAKFKEIAEAYEVLSDPKKRKIYDQYGE 71 (306)
T ss_pred cccHHHHhCccccccHHHHHHHHHHHHHhhCCCCCCCchhhHHHHHhhhhccccccCCHHHhhhccccCc
Confidence 47999999999999999999999999999999986543 479999999999999999999999998
No 58
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.49 E-value=2.7e-14 Score=109.19 Aligned_cols=68 Identities=34% Similarity=0.490 Sum_probs=62.7
Q ss_pred CCccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc-----HHHHHHHHHHHHHcCChhHHHHHhhhccc
Q 040915 4 GTRGSLYEVLRVEPTTMISEIKMAYQSLAKVYHLDLSGN-----GRDFIEIHKTYEMLSDPTARVVYDMSLVS 71 (104)
Q Consensus 4 ~~~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~-----~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~ 71 (104)
+.+++||.||||.+.++..+|+++||++++.+|||++.. +.+|++|-+||.+|+||.+|..||..-..
T Consensus 370 SkRkd~ykilGi~~~as~~eikkayrk~AL~~Hpd~~agsq~eaE~kFkevgeAy~il~d~~kr~r~dsg~dl 442 (486)
T KOG0550|consen 370 SKRKDWYKILGISRNASDDEIKKAYRKLALVHHPDKNAGSQKEAEAKFKEVGEAYTILSDPMKRVRFDSGQDL 442 (486)
T ss_pred hhhhhHHHHhhhhhhcccchhhhHHHHHHHHhCCCcCcchhHHHHHHHHHHHHHHHHhcCHHHHhhcccccch
Confidence 568899999999999999999999999999999998765 55899999999999999999999987663
No 59
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=99.42 E-value=1.8e-13 Score=100.24 Aligned_cols=53 Identities=30% Similarity=0.333 Sum_probs=47.9
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCc-----------cHHHHHHHHHHHHHcCC
Q 040915 6 RGSLYEVLRVEPTTMISEIKMAYQSLAKVYHLDLSG-----------NGRDFIEIHKTYEMLSD 58 (104)
Q Consensus 6 ~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~-----------~~~~f~~i~~Ay~~L~d 58 (104)
..++|+||||++++|.++||++||++++++|||+.. +.++|++|++||++|+.
T Consensus 199 ~~~ay~vLgv~~~as~~eIk~aYr~L~~~~HPDk~~~~g~~~~~~~~a~ek~~~I~~AYe~L~~ 262 (267)
T PRK09430 199 LEDAYKVLGVSESDDDQEIKRAYRKLMSEHHPDKLVAKGLPPEMMEMAKEKAQEIQAAYELIKK 262 (267)
T ss_pred HHhHHHHcCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHH
Confidence 369999999999999999999999999999999842 25799999999999975
No 60
>PRK01773 hscB co-chaperone HscB; Provisional
Probab=99.38 E-value=1.3e-12 Score=90.32 Aligned_cols=64 Identities=19% Similarity=0.230 Sum_probs=57.1
Q ss_pred cCcccccccCCC--CCHHHHHHHHHHHHHHhCCCCCcc---------HHHHHHHHHHHHHcCChhHHHHHhhhcc
Q 040915 7 GSLYEVLRVEPT--TMISEIKMAYQSLAKVYHLDLSGN---------GRDFIEIHKTYEMLSDPTARVVYDMSLV 70 (104)
Q Consensus 7 ~d~Y~iLgv~~~--a~~~~Ik~ayr~l~~~~hPD~~~~---------~~~f~~i~~Ay~~L~d~~~R~~YD~~~~ 70 (104)
.|||++|||++. .+...|+++|+.+.+++|||+... .+.-..||+||.||+||.+|..|=..+.
T Consensus 2 ~nyF~lf~lp~~F~iD~~~L~~~y~~Lq~~~HPD~f~~~~~~eq~~a~~~ss~iN~AY~tLkdPl~RA~YLL~L~ 76 (173)
T PRK01773 2 NNPFALFDLPVDFQLDNALLSERYLALQKSLHPDNFANSSAQEQRLAMQKSAEVNDALQILKDPILRAEAIIALN 76 (173)
T ss_pred CChHHhcCCCCCCCCCHHHHHHHHHHHHHHhCcCcccCCCHHHHHHHHHHHHHHHHHHHHHCChHHHHHHHHHhc
Confidence 499999999987 789999999999999999997543 3357899999999999999999998777
No 61
>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]
Probab=99.36 E-value=9.7e-13 Score=101.61 Aligned_cols=67 Identities=25% Similarity=0.332 Sum_probs=62.2
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc---------HHHHHHHHHHHHHcCChhHHHHHhhhcccc
Q 040915 6 RGSLYEVLRVEPTTMISEIKMAYQSLAKVYHLDLSGN---------GRDFIEIHKTYEMLSDPTARVVYDMSLVSR 72 (104)
Q Consensus 6 ~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~---------~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~ 72 (104)
..|+|+||||..+++..+||++||+|+.++||||.+. ++.+++|++||..|+|...|+.|-.+|...
T Consensus 97 ~fDPyEILGI~~~ts~rdik~~yr~Ls~KfhpdK~~~mvn~~rse~Ee~y~~ItkAY~~lTd~k~renyl~yGtPd 172 (610)
T COG5407 97 GFDPYEILGIDQDTSERDIKKRYRMLSMKFHPDKAPPMVNELRSEYEEKYKTITKAYGLLTDKKRRENYLNYGTPD 172 (610)
T ss_pred CCChHHhhcccCCCcHHHHHHHHHhheeecChhhcCCCChhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcCCCC
Confidence 4699999999999999999999999999999998765 678999999999999999999999998853
No 62
>TIGR00714 hscB Fe-S protein assembly co-chaperone HscB. This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock.
Probab=99.22 E-value=4.1e-11 Score=81.70 Aligned_cols=54 Identities=26% Similarity=0.413 Sum_probs=47.4
Q ss_pred CCHHHHHHHHHHHHHHhCCCCCcc---------HHHHHHHHHHHHHcCChhHHHHHhhhcccc
Q 040915 19 TMISEIKMAYQSLAKVYHLDLSGN---------GRDFIEIHKTYEMLSDPTARVVYDMSLVSR 72 (104)
Q Consensus 19 a~~~~Ik~ayr~l~~~~hPD~~~~---------~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~ 72 (104)
.+..+|+++|+++++++|||+.+. ...+..||+||+||+||.+|..|+..+.+.
T Consensus 3 iD~~~L~~~yr~lq~~~HPD~~~~~~~~~~~~a~~~s~~iN~AY~~L~~p~~Ra~ylL~l~g~ 65 (157)
T TIGR00714 3 LDTQALSLRYQDLQRQYHPDKFASGSAQEQLAAVQQSTTLNQAYQTLKDPLMRAEYMLSLHGI 65 (157)
T ss_pred CCHHHHHHHHHHHHHHHCcCCCCCCChhhhHHHHHHHHHHHHHHHHhCChhhhHHHHHHhcCC
Confidence 467899999999999999997432 457999999999999999999999988853
No 63
>KOG1150 consensus Predicted molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.15 E-value=7.2e-11 Score=83.16 Aligned_cols=62 Identities=24% Similarity=0.376 Sum_probs=56.3
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc-----HHHHHHHHHHHHHcCChhHHHHHhh
Q 040915 6 RGSLYEVLRVEPTTMISEIKMAYQSLAKVYHLDLSGN-----GRDFIEIHKTYEMLSDPTARVVYDM 67 (104)
Q Consensus 6 ~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~-----~~~f~~i~~Ay~~L~d~~~R~~YD~ 67 (104)
..|+|+||.|.|..+.++||+.||+|++..|||++++ ...|--|..||..|.|+..|..-+.
T Consensus 52 nLNpfeVLqIdpev~~edikkryRklSilVHPDKN~Dd~~rAqkAFdivkKA~k~l~n~~~rkr~~~ 118 (250)
T KOG1150|consen 52 NLNPFEVLQIDPEVTDEDIKKRYRKLSILVHPDKNPDDAERAQKAFDIVKKAYKLLENDKIRKRCLD 118 (250)
T ss_pred ccChHHHHhcCCCCCHHHHHHHHHhhheeecCCCCcccHHHHHHHHHHHHHHHHHHhCHHHHHHHHH
Confidence 5699999999999999999999999999999999998 4589999999999999987766554
No 64
>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]
Probab=99.06 E-value=2.2e-10 Score=84.14 Aligned_cols=67 Identities=25% Similarity=0.291 Sum_probs=58.3
Q ss_pred CCccCcccccccCC---CCCHHHHHHHHHHHHHHhCCCCCc------cHHHHHHHHHHHHHcCChhHHHHHhhhcc
Q 040915 4 GTRGSLYEVLRVEP---TTMISEIKMAYQSLAKVYHLDLSG------NGRDFIEIHKTYEMLSDPTARVVYDMSLV 70 (104)
Q Consensus 4 ~~~~d~Y~iLgv~~---~a~~~~Ik~ayr~l~~~~hPD~~~------~~~~f~~i~~Ay~~L~d~~~R~~YD~~~~ 70 (104)
+...|+|.+|||+. .++..+|.++.++.+.+||||+.. ..+-|..|+.|++||+|+.+|..||.---
T Consensus 40 Wk~~DlYa~lgLskyR~ka~~~qi~kah~kkv~kyHPDk~aa~g~~~~d~fFk~iqkA~evL~D~~~R~qyDS~df 115 (379)
T COG5269 40 WKKVDLYALLGLSKYRTKAIPPQILKAHKKKVYKYHPDKTAAGGNKGCDEFFKLIQKAREVLGDRKLRLQYDSNDF 115 (379)
T ss_pred hhhhhHHHHhchHhhhcCCCcHHHHHHHHHHHHHhCccchhccCCCCcHHHHHHHHHHHHHhccHHHHhhcccccc
Confidence 34679999999995 478999999999999999999752 27799999999999999999999996443
No 65
>KOG0568 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.82 E-value=7.5e-09 Score=74.75 Aligned_cols=52 Identities=27% Similarity=0.473 Sum_probs=46.8
Q ss_pred cCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc---HHHHHHHHHHHH-HcCC
Q 040915 7 GSLYEVLRVEPTTMISEIKMAYQSLAKVYHLDLSGN---GRDFIEIHKTYE-MLSD 58 (104)
Q Consensus 7 ~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~---~~~f~~i~~Ay~-~L~d 58 (104)
+.||.||||..+|+.++++.+|..|++++|||.... .+.|++|.+||. ||+.
T Consensus 47 ~e~fril~v~e~~~adevr~af~~lakq~hpdsgs~~adaa~f~qideafrkvlq~ 102 (342)
T KOG0568|consen 47 MECFRILGVEEGADADEVREAFHDLAKQVHPDSGSEEADAARFIQIDEAFRKVLQE 102 (342)
T ss_pred HHHHHHhcccccCchhHHHHHHHHHHHHcCCCCCCccccHHHHHHHHHHHHHHHHH
Confidence 478999999999999999999999999999997654 679999999999 6653
No 66
>KOG0723 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.78 E-value=1.6e-08 Score=64.65 Aligned_cols=51 Identities=22% Similarity=0.208 Sum_probs=47.1
Q ss_pred cccccccCCCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHcCCh
Q 040915 9 LYEVLRVEPTTMISEIKMAYQSLAKVYHLDLSGNGRDFIEIHKTYEMLSDP 59 (104)
Q Consensus 9 ~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~~~~f~~i~~Ay~~L~d~ 59 (104)
--.||||++.++.++||+++|++....|||+.+....-..||+|+++|...
T Consensus 58 A~lIL~v~~s~~k~KikeaHrriM~~NHPD~GGSPYlAsKINEAKdlLe~~ 108 (112)
T KOG0723|consen 58 AALILGVTPSLDKDKIKEAHRRIMLANHPDRGGSPYLASKINEAKDLLEGT 108 (112)
T ss_pred HHHHhCCCccccHHHHHHHHHHHHHcCCCcCCCCHHHHHHHHHHHHHHhcc
Confidence 345999999999999999999999999999999999999999999999754
No 67
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=98.64 E-value=3.9e-08 Score=82.80 Aligned_cols=51 Identities=33% Similarity=0.454 Sum_probs=45.1
Q ss_pred cCcccccccCCC----CCHHHHHHHHHHHHHHhCCCCCcc-HHHHHHHHHHHHHcC
Q 040915 7 GSLYEVLRVEPT----TMISEIKMAYQSLAKVYHLDLSGN-GRDFIEIHKTYEMLS 57 (104)
Q Consensus 7 ~d~Y~iLgv~~~----a~~~~Ik~ayr~l~~~~hPD~~~~-~~~f~~i~~Ay~~L~ 57 (104)
-+-|+||.|+-+ ...++||++|++++.+|||||++. .+.|..|++||+.|+
T Consensus 1281 d~A~eiL~i~l~n~~hD~~~KirrqY~kLA~kYHPDKNPEGRemFe~VnKAYE~L~ 1336 (2235)
T KOG1789|consen 1281 DLAREILSVDLTNEEHDKPAKIRRQYYKLAAKYHPDKNPEGREMFERVNKAYELLS 1336 (2235)
T ss_pred HHHHHHhccccCCCCcccHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHH
Confidence 366999999843 456889999999999999999987 789999999999998
No 68
>KOG3192 consensus Mitochondrial J-type chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=98.14 E-value=3.4e-06 Score=57.42 Aligned_cols=69 Identities=26% Similarity=0.480 Sum_probs=57.2
Q ss_pred CCCccCcccccccCC--CCCHHHHHHHHHHHHHHhCCCCCcc---------HHHHHHHHHHHHHcCChhHHHHHhhhccc
Q 040915 3 LGTRGSLYEVLRVEP--TTMISEIKMAYQSLAKVYHLDLSGN---------GRDFIEIHKTYEMLSDPTARVVYDMSLVS 71 (104)
Q Consensus 3 ~~~~~d~Y~iLgv~~--~a~~~~Ik~ayr~l~~~~hPD~~~~---------~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~ 71 (104)
++...+||.|||... -..++.+...|....+++|||+... .+....|++||.+|.||-+|..|=..+.+
T Consensus 4 ~~~~~~ff~~Fg~e~~~~~~p~~l~~~~~~~skkL~~d~~~~~~~~~~d~a~eqSa~lnkAY~TLk~pL~RA~Yilkl~g 83 (168)
T KOG3192|consen 4 MGSPSRFFDIFGMELSFKIDPDKLKEKYTDISKKLHPDRPGLSFAGDTDQASEQSAELNKAYDTLKDPLARARYLLKLKG 83 (168)
T ss_pred cchHHHHHHHhccccCCCCCcchhhHHHHHHHHhhCcccccccccccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhC
Confidence 356789999998664 4577778889999999999996322 56789999999999999999999887776
No 69
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=97.45 E-value=7.2e-05 Score=51.64 Aligned_cols=50 Identities=30% Similarity=0.355 Sum_probs=43.1
Q ss_pred cCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc-----------HHHHHHHHHHHHHc
Q 040915 7 GSLYEVLRVEPTTMISEIKMAYQSLAKVYHLDLSGN-----------GRDFIEIHKTYEML 56 (104)
Q Consensus 7 ~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~-----------~~~f~~i~~Ay~~L 56 (104)
.+.|.+|+|.......+|+++|+++...+|||+..+ .+++++|++||+.+
T Consensus 113 ~~~l~~l~~~~~~~~~~i~~~~r~l~~e~~~d~a~~~~~~~e~~~~~~~~~~~i~~a~~~~ 173 (174)
T COG1076 113 EDALKVLGVEIKADQDAIKKAYRKLLSEQHPDKAAAKGLKLEFIEKLKEKLQEIQEAYEDI 173 (174)
T ss_pred hhHHHHhcCchhhhHHHHHHHHHHHHHhcCHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhc
Confidence 578999999999999999999999999999995332 56788888888753
No 70
>PF03656 Pam16: Pam16; InterPro: IPR005341 The Pam16 protein is the fifth essential subunit of the pre-sequence translocase-associated protein import motor (PAM) []. In Saccharomyces cerevisiae (Baker's yeast), Pam16 is required for preprotein translocation into the matrix, but not for protein insertion into the inner membrane [].; PDB: 2GUZ_J.
Probab=97.41 E-value=0.00041 Score=45.90 Aligned_cols=53 Identities=19% Similarity=0.154 Sum_probs=41.9
Q ss_pred cccccccCCCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHcCChhH
Q 040915 9 LYEVLRVEPTTMISEIKMAYQSLAKVYHLDLSGNGRDFIEIHKTYEMLSDPTA 61 (104)
Q Consensus 9 ~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~~~~f~~i~~Ay~~L~d~~~ 61 (104)
-..||||++..+.++|.+.|.+|....+|++.+....-..|..|.+.|..+.+
T Consensus 60 A~~ILnv~~~~~~eeI~k~y~~Lf~~Nd~~kGGSfYLQSKV~rAKErl~~El~ 112 (127)
T PF03656_consen 60 ARQILNVKEELSREEIQKRYKHLFKANDPSKGGSFYLQSKVFRAKERLEQELK 112 (127)
T ss_dssp HHHHHT--G--SHHHHHHHHHHHHHHT-CCCTS-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCCccCHHHHHHHHHHHHhccCCCcCCCHHHHHHHHHHHHHHHHHHH
Confidence 35799999999999999999999999999999999988999999999875543
No 71
>KOG0431 consensus Auxilin-like protein and related proteins containing DnaJ domain [General function prediction only]
Probab=97.24 E-value=0.00039 Score=54.64 Aligned_cols=41 Identities=15% Similarity=0.212 Sum_probs=31.1
Q ss_pred cCCCCCHHHHHHHHHHHHHHhCCCCCcc-----------HHHHHHHHHHHHH
Q 040915 15 VEPTTMISEIKMAYQSLAKVYHLDLSGN-----------GRDFIEIHKTYEM 55 (104)
Q Consensus 15 v~~~a~~~~Ik~ayr~l~~~~hPD~~~~-----------~~~f~~i~~Ay~~ 55 (104)
+..-.+.++||++||+.++.+||||.+. ++.|-.+++||..
T Consensus 396 ltDLVtp~~VKKaYrKA~L~VHPDKlqq~gas~~qK~Iaekvfd~l~eawn~ 447 (453)
T KOG0431|consen 396 LTDLVTPAQVKKAYRKAVLCVHPDKLQQKGASLEQKYIAEKVFDALSEAWNK 447 (453)
T ss_pred hhhccCHHHHHHHHHhhhheeCcccccCCcccHHHHHHHHHHHHHHHHHHHh
Confidence 3344689999999999999999998654 4456666666654
No 72
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=97.02 E-value=0.00054 Score=47.29 Aligned_cols=63 Identities=24% Similarity=0.447 Sum_probs=50.6
Q ss_pred CcccccccCCCC--CHHHHHHHHHHHHHHhCCCCCcc---------HHHHHHHHHHHHHcCChhHHHHHhhhcc
Q 040915 8 SLYEVLRVEPTT--MISEIKMAYQSLAKVYHLDLSGN---------GRDFIEIHKTYEMLSDPTARVVYDMSLV 70 (104)
Q Consensus 8 d~Y~iLgv~~~a--~~~~Ik~ayr~l~~~~hPD~~~~---------~~~f~~i~~Ay~~L~d~~~R~~YD~~~~ 70 (104)
+++.++|.++.+ ..+.++..|+.+.+.+|||.... .+.+..++.||.+|.+|..|..|=..+.
T Consensus 2 ~~~~~~~~~~~f~~~~~~l~~~~~~~~~~~~~dr~~~~~~~~~~~~l~~~~~~~~a~~tLk~~l~ra~~~lal~ 75 (174)
T COG1076 2 DGFVLFGLPRAFQIDLDALKLQYRELQRAYHPDRFGKASEAEQRKALQQSAEVNPAYQTLKDPLLRAEYLLALA 75 (174)
T ss_pred CcccccccHHHHHHHHhHhhhhHHHHHHhhCcccccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhc
Confidence 456666776654 45568999999999999996543 3478999999999999999999987666
No 73
>PF13446 RPT: A repeated domain in UCH-protein
Probab=93.47 E-value=0.19 Score=28.69 Aligned_cols=44 Identities=18% Similarity=0.191 Sum_probs=31.3
Q ss_pred cCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHcC
Q 040915 7 GSLYEVLRVEPTTMISEIKMAYQSLAKVYHLDLSGNGRDFIEIHKTYEMLS 57 (104)
Q Consensus 7 ~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~~~~f~~i~~Ay~~L~ 57 (104)
.+-|++|||+++.+.+.|..+|+.... -.| .....+.+|..++.
T Consensus 5 ~~Ay~~Lgi~~~~~Dd~Ii~~f~~~~~-~~P------~~~~~~r~AL~~Ia 48 (62)
T PF13446_consen 5 EEAYEILGIDEDTDDDFIISAFQSKVN-DDP------SQKDTLREALRVIA 48 (62)
T ss_pred HHHHHHhCcCCCCCHHHHHHHHHHHHH-cCh------HhHHHHHHHHHHHH
Confidence 356999999999999999999998777 222 23344455555554
No 74
>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.
Probab=93.33 E-value=0.26 Score=34.75 Aligned_cols=38 Identities=21% Similarity=0.350 Sum_probs=32.0
Q ss_pred CCCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHcC
Q 040915 16 EPTTMISEIKMAYQSLAKVYHLDLSGNGRDFIEIHKTYEMLS 57 (104)
Q Consensus 16 ~~~a~~~~Ik~ayr~l~~~~hPD~~~~~~~f~~i~~Ay~~L~ 57 (104)
+++|+.+||.+|+.++..+| ..+++.-.+|..||+.+.
T Consensus 1 S~~ASfeEIq~Arn~ll~~y----~gd~~~~~~IEaAYD~IL 38 (194)
T PF11833_consen 1 SEDASFEEIQAARNRLLAQY----AGDEKSREAIEAAYDAIL 38 (194)
T ss_pred CCCCCHHHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHHH
Confidence 47899999999999999999 445677888999999554
No 75
>KOG3442 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.14 E-value=0.53 Score=31.09 Aligned_cols=52 Identities=19% Similarity=0.184 Sum_probs=42.2
Q ss_pred ccccccCCCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHcCChhH
Q 040915 10 YEVLRVEPTTMISEIKMAYQSLAKVYHLDLSGNGRDFIEIHKTYEMLSDPTA 61 (104)
Q Consensus 10 Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~~~~f~~i~~Ay~~L~d~~~ 61 (104)
-.||+|++..+.++|.+.|..|-....+.+.+....--.|-.|-+.|...-.
T Consensus 62 ~qILnV~~~ln~eei~k~yehLFevNdkskGGSFYLQSKVfRAkErld~El~ 113 (132)
T KOG3442|consen 62 QQILNVKEPLNREEIEKRYEHLFEVNDKSKGGSFYLQSKVFRAKERLDEELK 113 (132)
T ss_pred hhHhCCCCCCCHHHHHHHHHHHHhccCcccCcceeehHHHHHHHHHHHHHHH
Confidence 4699999999999999999999999998888876666667777777654433
No 76
>KOG0724 consensus Zuotin and related molecular chaperones (DnaJ superfamily), contains DNA-binding domains [Posttranslational modification, protein turnover, chaperones]
Probab=90.60 E-value=0.35 Score=36.29 Aligned_cols=49 Identities=24% Similarity=0.384 Sum_probs=39.0
Q ss_pred CCHHHHHHHHHHHHHHhCCCCCc--------cHHHHHHHHHHHHHcCChhHHHHHhh
Q 040915 19 TMISEIKMAYQSLAKVYHLDLSG--------NGRDFIEIHKTYEMLSDPTARVVYDM 67 (104)
Q Consensus 19 a~~~~Ik~ayr~l~~~~hPD~~~--------~~~~f~~i~~Ay~~L~d~~~R~~YD~ 67 (104)
++...|+.+|+..++..||++.. ..+.++.|.+||.+|.+...|...|.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~i~ka~~i~~~~~~~~t~~~ 60 (335)
T KOG0724|consen 4 ASEDELRLAYREMALKSHPEKKSFYEKLSLWTEEEFKKIEKALAILDDDEPRRTPDS 60 (335)
T ss_pred ccHHHHHHHHHHHhhhcCcHHHHHHHHhhhhHHHHHHHHHHHHHHHhccccccchhh
Confidence 56788999999999999999663 26679999999999998654444443
No 77
>PF14687 DUF4460: Domain of unknown function (DUF4460)
Probab=87.40 E-value=1.7 Score=28.06 Aligned_cols=43 Identities=14% Similarity=0.183 Sum_probs=31.1
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCCCcc--------HHHHHHHHHHHHHcCCh
Q 040915 17 PTTMISEIKMAYQSLAKVYHLDLSGN--------GRDFIEIHKTYEMLSDP 59 (104)
Q Consensus 17 ~~a~~~~Ik~ayr~l~~~~hPD~~~~--------~~~f~~i~~Ay~~L~d~ 59 (104)
+..+..+++.+.|...++.|||.... ++-++.++.-.+.|..+
T Consensus 4 r~~~~~~l~~aLr~Fy~~VHPDlF~~~P~~k~~Ne~SLk~Ln~~Ld~l~~~ 54 (112)
T PF14687_consen 4 RNLSSPDLRSALRPFYFAVHPDLFGQHPEEKQVNEESLKLLNSYLDSLKKR 54 (112)
T ss_pred hhhhhHHHHHHHHHHHHHhCCcccccChHHHHhhHHHHHHHHHHHHHHhcc
Confidence 34567789999999999999995433 44566666666666543
No 78
>COG5552 Uncharacterized conserved protein [Function unknown]
Probab=85.46 E-value=6.1 Score=23.92 Aligned_cols=61 Identities=15% Similarity=0.135 Sum_probs=39.4
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc---HHHHHHHHHHHHHcCChhHHHHHhhhcc
Q 040915 6 RGSLYEVLRVEPTTMISEIKMAYQSLAKVYHLDLSGN---GRDFIEIHKTYEMLSDPTARVVYDMSLV 70 (104)
Q Consensus 6 ~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~---~~~f~~i~~Ay~~L~d~~~R~~YD~~~~ 70 (104)
+.|.-+++|+.|-++..||+.|-++.++++.--..+. .+.|..-..+.. ...|+.-|..-.
T Consensus 2 CRNIk~LfnfdPPAT~~EvrdAAlQfVRKlSGtT~PS~~n~~AFe~AV~~ia----A~areLLDaLet 65 (88)
T COG5552 2 CRNIKELFNFDPPATPVEVRDAALQFVRKLSGTTHPSAANAEAFEAAVAEIA----ATARELLDALET 65 (88)
T ss_pred ccchHHHhCCCCCCCcHHHHHHHHHHHHHhcCCCCcchhhHHHHHHHHHHHH----HHHHHHHHhccc
Confidence 5677789999999999999999888888775443332 334433332222 344666665444
No 79
>PF10041 DUF2277: Uncharacterized conserved protein (DUF2277); InterPro: IPR018735 Members of this family of hypothetical bacterial proteins have no known function.
Probab=80.99 E-value=9.9 Score=23.00 Aligned_cols=36 Identities=14% Similarity=0.017 Sum_probs=29.4
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCc
Q 040915 6 RGSLYEVLRVEPTTMISEIKMAYQSLAKVYHLDLSG 41 (104)
Q Consensus 6 ~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~ 41 (104)
|.|.-.+.|+.|-++.+||..|-.+.++|..--..+
T Consensus 2 CRnI~~L~~fePpaT~~EI~aAAlQyVRKvSG~~~P 37 (78)
T PF10041_consen 2 CRNIKTLRNFEPPATDEEIRAAALQYVRKVSGFRKP 37 (78)
T ss_pred CcchhhhcCCCCCCCHHHHHHHHHHHHHHHccCCCc
Confidence 566677889999999999999999998888655433
No 80
>PF07709 SRR: Seven Residue Repeat; InterPro: IPR011714 This repeat is found in some Plasmodium and Theileria proteins.
Probab=73.38 E-value=3.3 Score=16.75 Aligned_cols=13 Identities=38% Similarity=0.710 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHcC
Q 040915 45 DFIEIHKTYEMLS 57 (104)
Q Consensus 45 ~f~~i~~Ay~~L~ 57 (104)
.|..|..||+.|+
T Consensus 2 ~~~~V~~aY~~l~ 14 (14)
T PF07709_consen 2 KFEKVKNAYEQLS 14 (14)
T ss_pred cHHHHHHHHHhcC
Confidence 4677888888764
No 81
>PF07739 TipAS: TipAS antibiotic-recognition domain; InterPro: IPR012925 TipAL is a bacterial transcriptional regulator of the MerR family. The tipA gene can be expressed as a long form, TipAL, and a short form, TipAS, which constitutes the C-terminal part of TipAL. TipAS forms the antibiotic-recognition domain []. This domain, which has an alpha-helical globin-like fold, is also found at the C terminus of other MerR family transcription factors, including Mta, a central regulator of multidrug resistance in Bacillus subtilis [], and SkgA from Caulobacter crescentus []. ; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent; PDB: 1NY9_A 3HH0_A 3QAO_A.
Probab=60.52 E-value=37 Score=20.90 Aligned_cols=48 Identities=21% Similarity=0.400 Sum_probs=28.5
Q ss_pred ccCCCCCH-HHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHcCChhHHHHHh
Q 040915 14 RVEPTTMI-SEIKMAYQSLAKVYHLDLSGNGRDFIEIHKTYEMLSDPTARVVYD 66 (104)
Q Consensus 14 gv~~~a~~-~~Ik~ayr~l~~~~hPD~~~~~~~f~~i~~Ay~~L~d~~~R~~YD 66 (104)
||+|+... -+|-+.+..++..+++ .+.+.+..|.+.| +.||.-+..||
T Consensus 51 g~~p~s~evq~l~~~~~~~~~~~~~---~~~~~~~~l~~~y--~~~~~~~~~~~ 99 (118)
T PF07739_consen 51 GVDPDSPEVQELAERWMELINQFTG---GDPELLRGLAQMY--VEDPRFAAMYD 99 (118)
T ss_dssp T--TT-HHHHHHHHHHHHHHHHSS------HHHHHHHHHHT--TSTHHHHHHHG
T ss_pred CCCcCCHHHHHHHHHHHHHHHHHhC---CCHHHHHHHHHHH--HcCHHHHhhcc
Confidence 45555432 2255556666666655 4467888888888 78888888888
No 82
>cd01388 SOX-TCF_HMG-box SOX-TCF_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and transcription factor-like proteins, TCF-1, -3, -4, and LEF-1. They appear to bind the minor groove of the A/T C A A A G/C-motif.
Probab=59.74 E-value=31 Score=19.73 Aligned_cols=42 Identities=10% Similarity=-0.084 Sum_probs=30.7
Q ss_pred HHHHHHHHHHhCCCCCccHHHHHHHHHHHHHcCChhHHHHHhh
Q 040915 25 KMAYQSLAKVYHLDLSGNGRDFIEIHKTYEMLSDPTARVVYDM 67 (104)
Q Consensus 25 k~ayr~l~~~~hPD~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~ 67 (104)
.+..+...+.-||+. +..+..+.|.+.|..|++.++...++.
T Consensus 13 ~~~~r~~~~~~~p~~-~~~eisk~l~~~Wk~ls~~eK~~y~~~ 54 (72)
T cd01388 13 SKRHRRKVLQEYPLK-ENRAISKILGDRWKALSNEEKQPYYEE 54 (72)
T ss_pred HHHHHHHHHHHCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 345566677789984 456788899999999997776555444
No 83
>PF12434 Malate_DH: Malate dehydrogenase enzyme
Probab=53.53 E-value=19 Score=17.49 Aligned_cols=17 Identities=18% Similarity=0.206 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHhCC
Q 040915 21 ISEIKMAYQSLAKVYHL 37 (104)
Q Consensus 21 ~~~Ik~ayr~l~~~~hP 37 (104)
.++.+.+.|+.++.||-
T Consensus 10 ~~~~r~~lR~AALeYHe 26 (28)
T PF12434_consen 10 KEDKRAQLRQAALEYHE 26 (28)
T ss_pred hHHHHHHHHHHHHHhcc
Confidence 47788999999999983
No 84
>cd01390 HMGB-UBF_HMG-box HMGB-UBF_HMG-box, class II and III members of the HMG-box superfamily of DNA-binding proteins. These proteins bind the minor groove of DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal proteins, HMG1 and HMG2, which bind to bent or distorted DNA such as four-way DNA junctions, synthetic DNA cruciforms, kinked cisplatin-modified DNA, DNA bulges, cross-overs in supercoiled DNA, and can cause looping of linear DNA. Class III members include nucleolar and mitochondrial transcription factors, UBF and mtTF1, which bind four-way DNA junctions.
Probab=48.01 E-value=46 Score=18.15 Aligned_cols=40 Identities=10% Similarity=-0.013 Sum_probs=27.5
Q ss_pred HHHHHHHHhCCCCCccHHHHHHHHHHHHHcCChhHHHHHhh
Q 040915 27 AYQSLAKVYHLDLSGNGRDFIEIHKTYEMLSDPTARVVYDM 67 (104)
Q Consensus 27 ayr~l~~~~hPD~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~ 67 (104)
..+...+.-||+. ...+..+.|.+.|..|++..+....+.
T Consensus 14 ~~r~~~~~~~p~~-~~~~i~~~~~~~W~~ls~~eK~~y~~~ 53 (66)
T cd01390 14 EQRPKLKKENPDA-SVTEVTKILGEKWKELSEEEKKKYEEK 53 (66)
T ss_pred HHHHHHHHHCcCC-CHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 3455566778873 457788999999999996655444443
No 85
>COG0089 RplW Ribosomal protein L23 [Translation, ribosomal structure and biogenesis]
Probab=43.85 E-value=25 Score=22.08 Aligned_cols=21 Identities=38% Similarity=0.477 Sum_probs=18.3
Q ss_pred ccccCCCCCHHHHHHHHHHHH
Q 040915 12 VLRVEPTTMISEIKMAYQSLA 32 (104)
Q Consensus 12 iLgv~~~a~~~~Ik~ayr~l~ 32 (104)
+|-|.+.|+..+||+|...+-
T Consensus 25 vF~V~~~AtK~~IK~AvE~lF 45 (94)
T COG0089 25 VFIVDPDATKPEIKAAVEELF 45 (94)
T ss_pred EEEECCCCCHHHHHHHHHHHh
Confidence 678999999999999998763
No 86
>cd00084 HMG-box High Mobility Group (HMG)-box is found in a variety of eukaryotic chromosomal proteins and transcription factors. HMGs bind to the minor groove of DNA and have been classified by DNA binding preferences. Two phylogenically distinct groups of Class I proteins bind DNA in a sequence specific fashion and contain a single HMG box. One group (SOX-TCF) includes transcription factors, TCF-1, -3, -4; and also SRY and LEF-1, which bind four-way DNA junctions and duplex DNA targets. The second group (MATA) includes fungal mating type gene products MC, MATA1 and Ste11. Class II and III proteins (HMGB-UBF) bind DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal proteins, HMG1 and HMG2, which bind to bent or distorted DNA such as four-way DNA junctions, synthetic DNA cruciforms, kinked cisplatin-modified DNA, DNA bulges, cross-overs in supercoiled DNA, and can cause looping of linear DNA. Class III member
Probab=42.61 E-value=56 Score=17.60 Aligned_cols=41 Identities=12% Similarity=0.067 Sum_probs=28.7
Q ss_pred HHHHHHHHHHhCCCCCccHHHHHHHHHHHHHcCChhHHHHHh
Q 040915 25 KMAYQSLAKVYHLDLSGNGRDFIEIHKTYEMLSDPTARVVYD 66 (104)
Q Consensus 25 k~ayr~l~~~~hPD~~~~~~~f~~i~~Ay~~L~d~~~R~~YD 66 (104)
...++...+.-||+. ...+....|...|..|++.++....+
T Consensus 12 ~~~~~~~~~~~~~~~-~~~~i~~~~~~~W~~l~~~~k~~y~~ 52 (66)
T cd00084 12 SQEHRAEVKAENPGL-SVGEISKILGEMWKSLSEEEKKKYEE 52 (66)
T ss_pred HHHHHHHHHHHCcCC-CHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 445566677788883 34678889999999999765544444
No 87
>PF00505 HMG_box: HMG (high mobility group) box; InterPro: IPR000910 High mobility group (HMG or HMGB) proteins are a family of relatively low molecular weight non-histone components in chromatin. HMG1 (also called HMG-T in fish) and HMG2 are two highly related proteins that bind single-stranded DNA preferentially and unwind double-stranded DNA. Although they have no sequence specificity, they have a high affinity for bent or distorted DNA, and bend linear DNA. HMG1 and HMG2 contain two DNA-binding HMG-box domains (A and B) that show structural and functional differences, and have a long acidic C-terminal domain rich in aspartic and glutamic acid residues. The acidic tail modulates the affinity of the tandem HMG boxes in HMG1 and 2 for a variety of DNA targets. HMG1 and 2 appear to play important architectural roles in the assembly of nucleoprotein complexes in a variety of biological processes, for example V(D)J recombination, the initiation of transcription, and DNA repair []. The profile in this entry describing the HMG-domains is much more general than the signature. In addition to the HMG1 and HMG2 proteins, HMG-domains occur in single or multiple copies in the following protein classes; the SOX family of transcription factors; SRY sex determining region Y protein and related proteins []; LEF1 lymphoid enhancer binding factor 1 []; SSRP recombination signal recognition protein; MTF1 mitochondrial transcription factor 1; UBF1/2 nucleolar transcription factors; Abf2 yeast ARS-binding factor []; and Saccharomyces cerevisiae transcription factors Ixr1, Rox1, Nhp6a, Nhp6b and Spp41.; GO: 0003677 DNA binding; PDB: 1I11_A 1J3C_A 1J3D_A 1WZ6_A 1WGF_A 2D7L_A 1GT0_D 3U2B_C 2CRJ_A 2CS1_A ....
Probab=42.30 E-value=60 Score=17.89 Aligned_cols=40 Identities=20% Similarity=0.141 Sum_probs=28.1
Q ss_pred HHHHHHHHHHhCCCCCccHHHHHHHHHHHHHcCChhHHHHHh
Q 040915 25 KMAYQSLAKVYHLDLSGNGRDFIEIHKTYEMLSDPTARVVYD 66 (104)
Q Consensus 25 k~ayr~l~~~~hPD~~~~~~~f~~i~~Ay~~L~d~~~R~~YD 66 (104)
....+...+.-||+.. ..+..+.|.+.|.-|++.. |..|-
T Consensus 12 ~~~~~~~~k~~~p~~~-~~~i~~~~~~~W~~l~~~e-K~~y~ 51 (69)
T PF00505_consen 12 CKEKRAKLKEENPDLS-NKEISKILAQMWKNLSEEE-KAPYK 51 (69)
T ss_dssp HHHHHHHHHHHSTTST-HHHHHHHHHHHHHCSHHHH-HHHHH
T ss_pred HHHHHHHHHHHhcccc-cccchhhHHHHHhcCCHHH-HHHHH
Confidence 4455666677799865 6778888999999987554 44443
No 88
>cd01389 MATA_HMG-box MATA_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include the fungal mating type gene products MC, MATA1 and Ste11.
Probab=41.31 E-value=71 Score=18.41 Aligned_cols=41 Identities=12% Similarity=-0.018 Sum_probs=29.9
Q ss_pred HHHHHHHHHHhCCCCCccHHHHHHHHHHHHHcCChhHHHHHh
Q 040915 25 KMAYQSLAKVYHLDLSGNGRDFIEIHKTYEMLSDPTARVVYD 66 (104)
Q Consensus 25 k~ayr~l~~~~hPD~~~~~~~f~~i~~Ay~~L~d~~~R~~YD 66 (104)
.+.++..++.-+|+. ...+..+.|.+.|..|++.++....+
T Consensus 13 ~~~~r~~~~~~~p~~-~~~eisk~~g~~Wk~ls~eeK~~y~~ 53 (77)
T cd01389 13 RQDKHAQLKTENPGL-TNNEISRIIGRMWRSESPEVKAYYKE 53 (77)
T ss_pred HHHHHHHHHHHCCCC-CHHHHHHHHHHHHhhCCHHHHHHHHH
Confidence 456677788889985 35678888999999999665544333
No 89
>cd01780 PLC_epsilon_RA Ubiquitin-like domain of Phosphatidylinositide-specific phospholipase. PLC_epsilon_RA Phosphatidylinositide-specific phospholipase C (PLC) is a signaling enzyme that hydrolyzes membrane phospholipids to generate inositol triphosphate. PLC-epsilon represents a novel forth class of PLC that has a PLC catalytic core domain, a CDC25 guanine nucleotide exchange factor domain and two RA (Ras-association) domains of which the second is critical for Ras activation of the enzyme.
Probab=39.61 E-value=44 Score=20.96 Aligned_cols=34 Identities=12% Similarity=0.127 Sum_probs=24.1
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCC
Q 040915 6 RGSLYEVLRVEPTTMISEIKMAYQSLAKVYHLDL 39 (104)
Q Consensus 6 ~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~ 39 (104)
...+|.||.++...|..+|-+.-.-.+++-+||.
T Consensus 10 ~dqP~~il~a~~~STa~Dvi~Qal~KA~rs~~~~ 43 (93)
T cd01780 10 PDQPYAILRAPRVSTAQDVIQQTLCKARRSNPNP 43 (93)
T ss_pred CCCCeeEEEccccccHHHHHHHHHHHhccCCCCc
Confidence 4578999999999988875554444455556664
No 90
>COG2879 Uncharacterized small protein [Function unknown]
Probab=39.33 E-value=64 Score=18.82 Aligned_cols=23 Identities=22% Similarity=0.112 Sum_probs=15.2
Q ss_pred HHHHHHHHhCCCCCcc--HHHHHHH
Q 040915 27 AYQSLAKVYHLDLSGN--GRDFIEI 49 (104)
Q Consensus 27 ayr~l~~~~hPD~~~~--~~~f~~i 49 (104)
.|-.-.++.|||+++- .+-|..-
T Consensus 27 nYVehmr~~hPd~p~mT~~EFfrec 51 (65)
T COG2879 27 NYVEHMRKKHPDKPPMTYEEFFREC 51 (65)
T ss_pred HHHHHHHHhCcCCCcccHHHHHHHH
Confidence 4566678999998875 3344433
No 91
>CHL00030 rpl23 ribosomal protein L23
Probab=38.40 E-value=34 Score=21.28 Aligned_cols=21 Identities=19% Similarity=0.191 Sum_probs=18.0
Q ss_pred ccccCCCCCHHHHHHHHHHHH
Q 040915 12 VLRVEPTTMISEIKMAYQSLA 32 (104)
Q Consensus 12 iLgv~~~a~~~~Ik~ayr~l~ 32 (104)
+|-|.+.|+..+||+|...+-
T Consensus 23 ~F~V~~~anK~eIK~avE~lf 43 (93)
T CHL00030 23 TFDVDSGSTKTEIKHWIELFF 43 (93)
T ss_pred EEEECCCCCHHHHHHHHHHHh
Confidence 577999999999999998763
No 92
>PF12725 DUF3810: Protein of unknown function (DUF3810); InterPro: IPR024294 This family of bacterial proteins is functionally uncharacterised. Proteins in this family are typically between 333 and 377 amino acids in length and contain a conserved HEXXH sequence motif that is characteristic of metallopeptidases. This family may therefore belong to an as yet uncharacterised family of peptidase enzymes.
Probab=38.08 E-value=98 Score=23.37 Aligned_cols=54 Identities=28% Similarity=0.273 Sum_probs=37.4
Q ss_pred ccCcccccccCC-CCCHHHHHHHHHHHHH-------HhCCCCCc-------cHHHHHHHHHHHHHcCCh
Q 040915 6 RGSLYEVLRVEP-TTMISEIKMAYQSLAK-------VYHLDLSG-------NGRDFIEIHKTYEMLSDP 59 (104)
Q Consensus 6 ~~d~Y~iLgv~~-~a~~~~Ik~ayr~l~~-------~~hPD~~~-------~~~~f~~i~~Ay~~L~d~ 59 (104)
+.++++-||++. ..+.+|+.+-.+.++. +.++|..+ ..+.++++.+||+.|.+.
T Consensus 81 R~pl~~~l~l~~~~~~~~eL~~l~~~li~~~N~l~~~i~~~~~~~~~~~~~~~~i~~~~~~~y~~l~~~ 149 (318)
T PF12725_consen 81 RPPLSERLGLETEEYSTEELKELTEYLIEKANELREQITEDDNGVVDIPYDKEEIFEEAREGYENLAER 149 (318)
T ss_pred CcCHHHHcCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCccccccCCCCHHHHHHHHHHHHHHHHHh
Confidence 456677899987 6788887776655544 33444331 267899999999988753
No 93
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=35.43 E-value=42 Score=20.11 Aligned_cols=20 Identities=25% Similarity=0.310 Sum_probs=17.7
Q ss_pred ccccCCCCCHHHHHHHHHHH
Q 040915 12 VLRVEPTTMISEIKMAYQSL 31 (104)
Q Consensus 12 iLgv~~~a~~~~Ik~ayr~l 31 (104)
+|-|++.++..+||+|...+
T Consensus 18 ~F~V~~~anK~eIK~avE~l 37 (77)
T TIGR03636 18 TFIVDRKATKGDIKRAVEKL 37 (77)
T ss_pred EEEECCCCCHHHHHHHHHHH
Confidence 56799999999999998876
No 94
>PF15178 TOM_sub5: Mitochondrial import receptor subunit TOM5 homolog
Probab=32.69 E-value=91 Score=17.12 Aligned_cols=23 Identities=13% Similarity=0.180 Sum_probs=18.7
Q ss_pred ccccccCCCCCHHHHHHHHHHHH
Q 040915 10 YEVLRVEPTTMISEIKMAYQSLA 32 (104)
Q Consensus 10 Y~iLgv~~~a~~~~Ik~ayr~l~ 32 (104)
+.|=|+.|..+++|.|+.-|+-.
T Consensus 2 ~~~egl~pk~DPeE~k~kmR~dv 24 (51)
T PF15178_consen 2 FRIEGLGPKMDPEEMKRKMREDV 24 (51)
T ss_pred cccccCCCCCCHHHHHHHHHHHH
Confidence 45678999999999998887644
No 95
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=32.39 E-value=39 Score=18.18 Aligned_cols=22 Identities=18% Similarity=0.306 Sum_probs=17.7
Q ss_pred ccccCCCCCHHHHHHHHHHHHH
Q 040915 12 VLRVEPTTMISEIKMAYQSLAK 33 (104)
Q Consensus 12 iLgv~~~a~~~~Ik~ayr~l~~ 33 (104)
|=+|+++++.++|+..|.....
T Consensus 3 v~nlp~~~t~~~l~~~f~~~g~ 24 (70)
T PF00076_consen 3 VGNLPPDVTEEELRDFFSQFGK 24 (70)
T ss_dssp EESETTTSSHHHHHHHHHTTST
T ss_pred EcCCCCcCCHHHHHHHHHHhhh
Confidence 4578999999999998886544
No 96
>PRK05738 rplW 50S ribosomal protein L23; Reviewed
Probab=31.00 E-value=53 Score=20.22 Aligned_cols=20 Identities=40% Similarity=0.539 Sum_probs=17.3
Q ss_pred ccccCCCCCHHHHHHHHHHH
Q 040915 12 VLRVEPTTMISEIKMAYQSL 31 (104)
Q Consensus 12 iLgv~~~a~~~~Ik~ayr~l 31 (104)
+|-|++.++..+||++...+
T Consensus 24 ~F~V~~~a~K~eIK~aie~l 43 (92)
T PRK05738 24 VFEVAPDATKPEIKAAVEKL 43 (92)
T ss_pred EEEECCCCCHHHHHHHHHHH
Confidence 56789999999999998876
No 97
>KOG3960 consensus Myogenic helix-loop-helix transcription factor [Transcription]
Probab=30.70 E-value=38 Score=25.20 Aligned_cols=15 Identities=20% Similarity=0.507 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHcC
Q 040915 43 GRDFIEIHKTYEMLS 57 (104)
Q Consensus 43 ~~~f~~i~~Ay~~L~ 57 (104)
..+.+.||+|+++|.
T Consensus 127 RRRLkKVNEAFE~LK 141 (284)
T KOG3960|consen 127 RRRLKKVNEAFETLK 141 (284)
T ss_pred HHHHHHHHHHHHHHH
Confidence 447899999999975
No 98
>COG3195 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.47 E-value=1.3e+02 Score=20.99 Aligned_cols=39 Identities=23% Similarity=0.276 Sum_probs=25.9
Q ss_pred CCCCCHHHHHHHHHHH-----------HHHhCCCCCcc---------------------------HHHHHHHHHHHH
Q 040915 16 EPTTMISEIKMAYQSL-----------AKVYHLDLSGN---------------------------GRDFIEIHKTYE 54 (104)
Q Consensus 16 ~~~a~~~~Ik~ayr~l-----------~~~~hPD~~~~---------------------------~~~f~~i~~Ay~ 54 (104)
.|-++.+.+..+.... +..-|||-.+. .++|..||+||.
T Consensus 41 ~pf~s~~~l~~am~~~v~~A~~~~rl~liraHPdLAgk~a~a~elta~S~~EQasAGLd~Ls~~E~a~f~~LN~aY~ 117 (176)
T COG3195 41 RPFASAEGLHAAMCRAVRAASEEERLALIRAHPDLAGKAAIAGELTAESTSEQASAGLDRLSPEEFARFTELNAAYV 117 (176)
T ss_pred CCcCCHHHHHHHHHHHHHcCCHHHHHHHHHhChhhHHHHHHHHHhhhhhHHHHHhcCcccCCHHHHHHHHHHHHHHH
Confidence 4566777777766444 34669993210 458999999986
No 99
>PF06767 Sif: Sif protein; InterPro: IPR010637 This family consists of several SifA and SifB and SseJ proteins, which seem to be specific to the Salmonella species. SifA, SifB and SseJ have been demonstrated to localise to the Salmonella-containing vacuole (SCV) and to Salmonella-induced filaments (Sifs). Trafficking of SseJ and SifB away from the SCV requires the SPI-2 effector SifA. SseJ trafficking away from the SCV along Sifs is unnecessary for its virulence function [].; PDB: 3HW2_A 3CXB_A.
Probab=29.38 E-value=86 Score=24.08 Aligned_cols=41 Identities=15% Similarity=0.195 Sum_probs=30.7
Q ss_pred HHHHHHHHHHhCCCCCccHHHHHHHHHHHHHcCChhHHHHH
Q 040915 25 KMAYQSLAKVYHLDLSGNGRDFIEIHKTYEMLSDPTARVVY 65 (104)
Q Consensus 25 k~ayr~l~~~~hPD~~~~~~~f~~i~~Ay~~L~d~~~R~~Y 65 (104)
.+|..-+...+||+.++..+.+..+-.+...|.-|..|..+
T Consensus 44 aeA~~cI~eLc~~~~~pT~~~l~~iF~~LKeLAspg~Kd~F 84 (337)
T PF06767_consen 44 AEALECIFELCHPDPPPTRERLEDIFFELKELASPGYKDRF 84 (337)
T ss_dssp HHHHHHHHHHHSSSS---HHHHHHHHHHHHHHC-HHHHTTE
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhcCchhhhce
Confidence 35777788899999998888888888888889999888764
No 100
>PF08447 PAS_3: PAS fold; InterPro: IPR013655 The PAS fold corresponds to the structural domain that has previously been defined as PAS and PAC motifs []. The PAS fold appears in archaea, eubacteria and eukarya. The PAS domain contains a sensory box, or S-box domain that occupies the central portion of the PAS domain but is more widely distributed. It is often tandemly repeated. Known prosthetic groups bound in the S-box domain include haem in the oxygen sensor FixL [], FAD in the redox potential sensor NifL [], and a 4-hydroxycinnamyl chromophore in photoactive yellow protein []. Proteins containing the domain often contain other regulatory domains such as response regulator or sensor histidine kinase domains. Other S-box proteins include phytochromes and the aryl hydrocarbon receptor nuclear translocator. This domain has been found in the gene product of the madA gene of the filamentous zygomycete fungus Phycomyces blakesleeanus. It has been shown that MadA encodes a blue-light photoreceptor for phototropism and other light responses. The gene is involved in the phototropic responses associated with sporangiophore growth; they exhibit phototropism by bending toward near-UV and blue wavelengths and away from far-UV wavelengths in a manner that is physiologically similar to plant phototropic responses [].; GO: 0005515 protein binding; PDB: 3NJA_D 3H9W_A 3GDI_B 3ICY_A 3EEH_A 3MR0_B.
Probab=27.68 E-value=14 Score=21.16 Aligned_cols=30 Identities=27% Similarity=0.460 Sum_probs=19.9
Q ss_pred cCcccccccCCCCCHHHH-HHHHHHHHHHhCCCCC
Q 040915 7 GSLYEVLRVEPTTMISEI-KMAYQSLAKVYHLDLS 40 (104)
Q Consensus 7 ~d~Y~iLgv~~~a~~~~I-k~ayr~l~~~~hPD~~ 40 (104)
.++++|||+++ +++ ......+....|||--
T Consensus 6 ~~~~~i~G~~~----~~~~~~~~~~~~~~ihpdD~ 36 (91)
T PF08447_consen 6 DNFYEIFGYSP----EEIGKPDFEEWLERIHPDDR 36 (91)
T ss_dssp THHHHHHTS-H----HHHTCBEHHHHHHHB-TTTH
T ss_pred HHHHHHhCCCH----HHhccCCHHHHHhhcCHHHH
Confidence 46788898855 556 5566677889999853
No 101
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=26.82 E-value=71 Score=19.48 Aligned_cols=21 Identities=24% Similarity=0.256 Sum_probs=17.9
Q ss_pred ccccCCCCCHHHHHHHHHHHH
Q 040915 12 VLRVEPTTMISEIKMAYQSLA 32 (104)
Q Consensus 12 iLgv~~~a~~~~Ik~ayr~l~ 32 (104)
.|-|++.|+..+||+|..++-
T Consensus 25 ~F~V~~~anK~eIK~AvE~lf 45 (84)
T PRK14548 25 TFIVDRRATKPDIKRAVEELF 45 (84)
T ss_pred EEEECCCCCHHHHHHHHHHHh
Confidence 467899999999999998763
No 102
>PF04282 DUF438: Family of unknown function (DUF438); InterPro: IPR007380 This is a a group of uncharacterised proteins.
Probab=26.39 E-value=38 Score=20.07 Aligned_cols=27 Identities=15% Similarity=0.154 Sum_probs=21.7
Q ss_pred ccccCCCCCHHHHHHHHHHHHHHhCCC
Q 040915 12 VLRVEPTTMISEIKMAYQSLAKVYHLD 38 (104)
Q Consensus 12 iLgv~~~a~~~~Ik~ayr~l~~~~hPD 38 (104)
|+.+..+.+.++||+.|.++.....|-
T Consensus 6 i~~Lh~G~~~e~vk~~F~~~~~~Vs~~ 32 (71)
T PF04282_consen 6 IKRLHEGEDPEEVKEEFKKLFSDVSAS 32 (71)
T ss_pred HHHHhCCCCHHHHHHHHHHHHCCCCHH
Confidence 345777889999999999988877665
No 103
>PF03820 Mtc: Tricarboxylate carrier; InterPro: IPR004686 The MTC family consists of a limited number of homologues, all from eukaryotes. One member of the family has been functionally characterised as a tricarboxylate carrier from rat liver mitochondria. The rat liver mitochondrial tricarboxylate carrier has been reported to transport citrate, cis-aconitate, threo-D-isocitrate, D- and L-tartrate, malate, succinate and phosphoenolpyruvate. It presumably functions by a proton symport mechanism. The rest of the characterised proteins appear to be sideroflexins involved in iron transport.; GO: 0008324 cation transmembrane transporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016020 membrane
Probab=25.22 E-value=84 Score=23.81 Aligned_cols=25 Identities=20% Similarity=0.195 Sum_probs=20.4
Q ss_pred CCCCCHHHHHHHHHHHHHHhCCCCC
Q 040915 16 EPTTMISEIKMAYQSLAKVYHLDLS 40 (104)
Q Consensus 16 ~~~a~~~~Ik~ayr~l~~~~hPD~~ 40 (104)
+++.+.++|-+|-+-.-..+|||..
T Consensus 45 ~~~~~~~~lw~Ak~l~~Sa~HPDTg 69 (308)
T PF03820_consen 45 PPGLTDDELWKAKKLYDSAFHPDTG 69 (308)
T ss_pred CCCCCHHHHHHHHHHhhcccCCCCC
Confidence 3446889999999999999999953
No 104
>PF00276 Ribosomal_L23: Ribosomal protein L23; InterPro: IPR013025 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This domain is found in both eukaryotic L25 and prokaryotic and eukaryotic L23 proteins.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3DF4_T 3DF2_T 4A1E_R 4A1A_R 4A1C_R 4A17_R 2HGU_W 2HGQ_W 1N88_A 2HGJ_W ....
Probab=25.08 E-value=79 Score=19.28 Aligned_cols=21 Identities=29% Similarity=0.449 Sum_probs=17.7
Q ss_pred ccccCCCCCHHHHHHHHHHHH
Q 040915 12 VLRVEPTTMISEIKMAYQSLA 32 (104)
Q Consensus 12 iLgv~~~a~~~~Ik~ayr~l~ 32 (104)
.|-|++.++..+||++...+-
T Consensus 24 tF~V~~~atK~~Ik~aie~iy 44 (91)
T PF00276_consen 24 TFEVDPRATKTEIKEAIEKIY 44 (91)
T ss_dssp EEEETTTSTHHHHHHHHHHHH
T ss_pred EEEEeCCCCHHHHHHHHHhhc
Confidence 577999999999999887653
No 105
>smart00362 RRM_2 RNA recognition motif.
Probab=24.81 E-value=83 Score=16.28 Aligned_cols=20 Identities=15% Similarity=0.301 Sum_probs=16.5
Q ss_pred ccccCCCCCHHHHHHHHHHH
Q 040915 12 VLRVEPTTMISEIKMAYQSL 31 (104)
Q Consensus 12 iLgv~~~a~~~~Ik~ayr~l 31 (104)
|-||++..+.++|+..+...
T Consensus 4 i~~l~~~~~~~~l~~~~~~~ 23 (72)
T smart00362 4 VGNLPPDVTEEDLKELFSKF 23 (72)
T ss_pred EcCCCCcCCHHHHHHHHHhc
Confidence 56888999999999888754
No 106
>PF04967 HTH_10: HTH DNA binding domain; InterPro: IPR007050 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. This entry represents the HTH DNA binding domain found in Halobacterium salinarium (Halobacterium halobium) and described as a putative bacterio-opsin activator.
Probab=24.72 E-value=24 Score=19.62 Aligned_cols=21 Identities=19% Similarity=0.264 Sum_probs=11.8
Q ss_pred ccccCCCCCHHHHHHHHHHHH
Q 040915 12 VLRVEPTTMISEIKMAYQSLA 32 (104)
Q Consensus 12 iLgv~~~a~~~~Ik~ayr~l~ 32 (104)
.|||++.+-...|+++-++++
T Consensus 32 ~lgis~st~~~~LRrae~kli 52 (53)
T PF04967_consen 32 ELGISKSTVSEHLRRAERKLI 52 (53)
T ss_pred HhCCCHHHHHHHHHHHHHHHh
Confidence 456665555555666655543
No 107
>smart00360 RRM RNA recognition motif.
Probab=23.17 E-value=92 Score=15.98 Aligned_cols=21 Identities=14% Similarity=0.301 Sum_probs=16.3
Q ss_pred ccccCCCCCHHHHHHHHHHHH
Q 040915 12 VLRVEPTTMISEIKMAYQSLA 32 (104)
Q Consensus 12 iLgv~~~a~~~~Ik~ayr~l~ 32 (104)
|-||+...+.++|+..+....
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g 21 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFG 21 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhC
Confidence 347788889999999887653
No 108
>PRK10141 DNA-binding transcriptional repressor ArsR; Provisional
Probab=22.39 E-value=1.1e+02 Score=19.66 Aligned_cols=24 Identities=17% Similarity=0.084 Sum_probs=20.1
Q ss_pred HHHHHHHHHcCChhHHHHHhhhcc
Q 040915 47 IEIHKTYEMLSDPTARVVYDMSLV 70 (104)
Q Consensus 47 ~~i~~Ay~~L~d~~~R~~YD~~~~ 70 (104)
..+.+.+.+|+||.++++......
T Consensus 4 ~~~~~~fkaLadptRl~IL~~L~~ 27 (117)
T PRK10141 4 LLPLQLFKILSDETRLGIVLLLRE 27 (117)
T ss_pred hHHHHHHHHhCCHHHHHHHHHHHH
Confidence 456788999999999999997654
No 109
>PF14893 PNMA: PNMA
Probab=21.50 E-value=81 Score=24.16 Aligned_cols=19 Identities=32% Similarity=0.307 Sum_probs=16.5
Q ss_pred ccccCCCCCHHHHHHHHHH
Q 040915 12 VLRVEPTTMISEIKMAYQS 30 (104)
Q Consensus 12 iLgv~~~a~~~~Ik~ayr~ 30 (104)
|+||+.+++.++|..+.+.
T Consensus 23 v~giP~dc~~~ei~e~l~~ 41 (331)
T PF14893_consen 23 VLGIPEDCEEAEIEEALQA 41 (331)
T ss_pred eecCCCCCCHHHHHHHHHH
Confidence 7899999999999987655
No 110
>PF03206 NifW: Nitrogen fixation protein NifW; InterPro: IPR004893 Nitrogenase is a complex metalloenzyme composed of two proteins designated the Fe-protein and the MoFe-protein. Apart from these two proteins, a number of accessory proteins are essential for the maturation and assembly of nitrogenase. Even though experimental evidence suggests that these accessory proteins are required for nitrogenase activity, the exact roles played by many of these proteins in the functions of nitrogenase are unclear []. Using yeast two-hybrid screening it has been shown that NifW can interact with itself as well as NifZ. ; GO: 0009399 nitrogen fixation
Probab=20.98 E-value=2.4e+02 Score=17.95 Aligned_cols=35 Identities=6% Similarity=0.108 Sum_probs=26.4
Q ss_pred CCccCcccccccCCC-----CCHHHHHHHHHHHHHHhCCC
Q 040915 4 GTRGSLYEVLRVEPT-----TMISEIKMAYQSLAKVYHLD 38 (104)
Q Consensus 4 ~~~~d~Y~iLgv~~~-----a~~~~Ik~ayr~l~~~~hPD 38 (104)
+.-.++++.|||+-+ ...-.|-+.|........+.
T Consensus 12 ~sAEdFf~fF~V~YDp~vv~V~RLHILkrF~~yL~~~~~~ 51 (105)
T PF03206_consen 12 SSAEDFFDFFGVPYDPKVVNVNRLHILKRFGQYLRAADFA 51 (105)
T ss_pred cCHHHHHHHhCCCcchhHHHHhhHHHHHHHHHHHHhccCC
Confidence 456789999999865 34556888888888888764
No 111
>PF14710 Nitr_red_alph_N: Respiratory nitrate reductase alpha N-terminal; PDB: 1SIW_A 3EGW_A 3IR6_A 1R27_C 1Y5I_A 1Y4Z_A 1Q16_A 3IR7_A 1Y5L_A 1Y5N_A ....
Probab=20.22 E-value=31 Score=18.00 Aligned_cols=21 Identities=19% Similarity=0.194 Sum_probs=11.0
Q ss_pred CCCCCCCCCCCCCcHHHhHHh
Q 040915 80 FGCLCWSGFHPTRRWEIIVEE 100 (104)
Q Consensus 80 ~~~~~~~~~~~~~~w~~~~~~ 100 (104)
|+...|.-....|.||+..|+
T Consensus 16 fa~gHg~~~~edR~WE~~YR~ 36 (38)
T PF14710_consen 16 FANGHGQTTEEDREWEDAYRQ 36 (38)
T ss_dssp ETTTTEEEE----GGGHHHHH
T ss_pred cCCCceeecCCCccHHHHHhc
Confidence 444445555677899998875
No 112
>PF04719 TAFII28: hTAFII28-like protein conserved region; InterPro: IPR006809 The general transcription factor, TFIID, consists of the TATA-binding protein (TBP) associated with a series of TBP-associated factors (TAFs) that together participate in the assembly of the transcription preinitiation complex. The conserved region is found at the C terminus of most member proteins. The crystal structure of hTAFII28 with hTAFII18 shows that this region is involved in the binding of these two subunits. The conserved region contains four alpha helices and three loops arranged as in histone H3 [, ].; GO: 0006367 transcription initiation from RNA polymerase II promoter, 0005634 nucleus; PDB: 1BH9_B 1BH8_B.
Probab=20.00 E-value=92 Score=19.26 Aligned_cols=13 Identities=23% Similarity=0.386 Sum_probs=9.5
Q ss_pred CCHHHHHHHHHHH
Q 040915 19 TMISEIKMAYQSL 31 (104)
Q Consensus 19 a~~~~Ik~ayr~l 31 (104)
..+..|++|||+|
T Consensus 78 l~P~hlreA~rrL 90 (90)
T PF04719_consen 78 LQPDHLREAYRRL 90 (90)
T ss_dssp --HHHHHHHHHHH
T ss_pred CCcHHHHHHHHhC
Confidence 4678899999986
Done!