Query 040915
Match_columns 104
No_of_seqs 149 out of 1328
Neff 7.6
Searched_HMMs 29240
Date Mon Mar 25 21:16:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040915.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040915hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2och_A Hypothetical protein DN 99.9 3.9E-24 1.3E-28 127.8 7.7 68 3-70 4-72 (73)
2 2dn9_A DNAJ homolog subfamily 99.9 6.9E-24 2.3E-28 128.3 7.9 69 3-71 3-75 (79)
3 2o37_A Protein SIS1; HSP40, J- 99.9 4.5E-24 1.5E-28 132.8 7.2 70 3-72 4-74 (92)
4 2ctp_A DNAJ homolog subfamily 99.9 6.8E-24 2.3E-28 128.1 7.7 70 2-71 2-74 (78)
5 2ctr_A DNAJ homolog subfamily 99.9 1E-23 3.4E-28 130.2 8.1 69 3-71 3-74 (88)
6 2yua_A Williams-beuren syndrom 99.9 1.3E-23 4.6E-28 132.2 7.1 70 4-73 14-87 (99)
7 1hdj_A Human HSP40, HDJ-1; mol 99.9 2.6E-23 8.8E-28 125.2 7.8 65 7-71 3-70 (77)
8 2ej7_A HCG3 gene; HCG3 protein 99.9 3.2E-23 1.1E-27 126.1 7.8 68 4-71 6-78 (82)
9 2cug_A Mkiaa0962 protein; DNAJ 99.9 3.4E-23 1.1E-27 127.8 7.8 69 4-72 14-85 (88)
10 2dmx_A DNAJ homolog subfamily 99.9 4.8E-23 1.6E-27 127.9 8.2 68 4-71 6-78 (92)
11 1wjz_A 1700030A21RIK protein; 99.9 1.3E-23 4.3E-28 130.8 4.3 69 5-73 14-92 (94)
12 2ctq_A DNAJ homolog subfamily 99.9 6E-23 2.1E-27 131.8 7.0 68 4-71 17-88 (112)
13 2ctw_A DNAJ homolog subfamily 99.9 2.6E-22 8.9E-27 128.3 8.1 90 4-103 14-107 (109)
14 2lgw_A DNAJ homolog subfamily 99.9 1.4E-22 4.7E-27 127.8 6.4 65 7-71 2-71 (99)
15 1gh6_A Large T antigen; tumor 99.9 2E-24 6.7E-29 139.5 -4.7 69 6-74 7-77 (114)
16 2qsa_A DNAJ homolog DNJ-2; J-d 99.9 3.1E-22 1E-26 127.8 5.4 68 4-71 12-87 (109)
17 1bq0_A DNAJ, HSP40; chaperone, 99.9 1.5E-22 5E-27 128.2 3.8 66 6-71 2-71 (103)
18 2l6l_A DNAJ homolog subfamily 99.8 1.2E-21 4.2E-26 131.7 6.1 68 4-71 7-84 (155)
19 2pf4_E Small T antigen; PP2A, 99.8 5.3E-22 1.8E-26 136.2 0.4 69 6-74 10-80 (174)
20 3apq_A DNAJ homolog subfamily 99.8 1E-20 3.4E-25 131.0 6.5 65 7-71 2-70 (210)
21 2ys8_A RAB-related GTP-binding 99.8 8.6E-21 2.9E-25 117.5 4.3 59 5-63 25-86 (90)
22 1faf_A Large T antigen; J doma 99.8 5.4E-21 1.9E-25 116.0 3.2 60 6-65 10-71 (79)
23 3hho_A CO-chaperone protein HS 99.8 1.4E-20 4.8E-25 129.0 5.5 68 5-72 2-80 (174)
24 1fpo_A HSC20, chaperone protei 99.8 2.7E-20 9.3E-25 127.3 5.3 66 7-72 1-77 (171)
25 3bvo_A CO-chaperone protein HS 99.8 1.7E-19 5.9E-24 126.6 6.1 67 5-71 41-118 (207)
26 3lz8_A Putative chaperone DNAJ 99.8 1.7E-20 6E-25 139.4 0.0 65 6-70 27-94 (329)
27 2guz_A Mitochondrial import in 99.8 1.3E-19 4.3E-24 107.8 2.7 57 6-62 13-70 (71)
28 3uo3_A J-type CO-chaperone JAC 99.7 4.9E-19 1.7E-23 122.1 4.2 68 4-71 8-84 (181)
29 1iur_A KIAA0730 protein; DNAJ 99.7 2.6E-19 9E-24 110.6 2.1 58 5-62 14-76 (88)
30 1n4c_A Auxilin; four helix bun 99.7 5.8E-19 2E-23 121.8 1.7 60 6-65 116-182 (182)
31 3ag7_A Putative uncharacterize 99.7 1.8E-18 6.2E-23 110.1 3.4 55 5-60 39-104 (106)
32 2qwo_B Putative tyrosine-prote 99.7 3.7E-18 1.3E-22 106.2 1.9 52 7-58 33-91 (92)
33 3apo_A DNAJ homolog subfamily 99.7 3.4E-18 1.2E-22 136.8 0.9 67 4-70 18-88 (780)
34 2guz_B Mitochondrial import in 99.3 3.7E-12 1.3E-16 74.3 4.5 53 7-59 4-59 (65)
35 2y4t_A DNAJ homolog subfamily 99.2 5.2E-12 1.8E-16 92.4 5.0 62 6-67 381-449 (450)
36 2pzi_A Probable serine/threoni 94.3 0.036 1.2E-06 43.7 3.8 48 4-55 626-675 (681)
37 2b7e_A PRE-mRNA processing pro 62.0 18 0.00061 19.9 4.7 49 22-70 3-57 (59)
38 4a3n_A Transcription factor SO 56.8 21 0.00073 19.2 4.8 40 25-66 14-53 (71)
39 2d7l_A WD repeat and HMG-box D 56.2 16 0.00054 21.0 3.7 45 25-70 17-61 (81)
40 1qqr_A Streptokinase domain B; 55.0 7.1 0.00024 25.2 2.1 29 10-38 35-63 (138)
41 1uzc_A Hypothetical protein FL 47.3 37 0.0013 19.1 5.0 53 18-70 11-67 (71)
42 2eqz_A High mobility group pro 46.7 38 0.0013 19.2 4.3 41 25-65 27-68 (86)
43 3f27_D Transcription factor SO 46.0 38 0.0013 18.9 5.0 40 25-65 18-57 (83)
44 1ckt_A High mobility group 1 p 45.1 36 0.0012 18.3 4.8 41 26-66 14-55 (71)
45 1i11_A Transcription factor SO 43.6 42 0.0014 18.7 4.5 42 25-67 16-57 (81)
46 1wgf_A Upstream binding factor 43.4 45 0.0016 19.1 4.5 42 25-67 32-73 (90)
47 2yrq_A High mobility group pro 40.6 61 0.0021 20.8 5.1 43 24-66 26-69 (173)
48 2crj_A SWI/SNF-related matrix- 39.4 54 0.0018 18.8 5.3 41 25-66 19-59 (92)
49 1wz6_A HMG-box transcription f 37.9 53 0.0018 18.3 4.5 40 25-66 19-58 (82)
50 3nm9_A HMG-D, high mobility gr 37.2 51 0.0018 17.9 5.0 39 25-67 15-53 (73)
51 2cs1_A PMS1 protein homolog 1; 36.3 61 0.0021 18.5 4.4 41 25-66 19-59 (92)
52 2cqn_A Formin-binding protein 35.8 62 0.0021 18.4 4.7 51 19-70 6-63 (77)
53 1hry_A Human SRY; DNA, DNA-bin 35.5 56 0.0019 17.8 4.5 40 25-66 16-55 (76)
54 1vq8_S 50S ribosomal protein L 34.9 29 0.00098 20.4 2.4 21 12-32 26-46 (85)
55 1gt0_D Transcription factor SO 34.8 54 0.0019 18.1 3.6 41 25-66 14-54 (80)
56 2lef_A LEF-1 HMG, protein (lym 34.3 64 0.0022 18.1 4.0 40 25-66 14-53 (86)
57 1hme_A High mobility group pro 33.9 60 0.0021 17.7 5.2 40 25-65 18-57 (77)
58 2lxi_A RNA-binding protein 10; 33.8 35 0.0012 19.3 2.7 21 12-32 6-26 (91)
59 2e6o_A HMG box-containing prot 33.3 68 0.0023 18.1 4.5 41 24-66 28-68 (87)
60 3tmm_A Transcription factor A, 33.3 79 0.0027 21.6 4.9 41 25-66 53-93 (238)
61 3r8s_T 50S ribosomal protein L 33.2 31 0.0011 20.6 2.4 20 12-31 31-50 (93)
62 2zjr_Q 50S ribosomal protein L 33.1 31 0.001 20.7 2.4 21 12-32 26-46 (95)
63 3tq6_A Transcription factor A, 32.4 87 0.003 21.0 4.9 41 25-66 21-61 (214)
64 2co9_A Thymus high mobility gr 32.1 71 0.0024 18.7 4.0 41 25-66 29-69 (102)
65 1cf7_A Protein (transcription 31.5 74 0.0025 18.0 4.5 44 18-68 9-52 (76)
66 1ug2_A 2610100B20RIK gene prod 30.9 29 0.001 20.9 2.0 21 18-38 67-87 (95)
67 3j21_T 50S ribosomal protein L 30.6 37 0.0013 19.9 2.4 20 12-31 27-46 (86)
68 3tve_T 50S ribosomal protein L 30.4 37 0.0013 20.2 2.4 20 12-31 25-44 (92)
69 1aab_A High mobility group pro 29.9 35 0.0012 19.1 2.3 42 25-66 19-61 (83)
70 1j46_A SRY, sex-determining re 29.8 78 0.0027 17.7 3.9 40 25-66 16-55 (85)
71 4euw_A Transcription factor SO 26.1 1E+02 0.0035 18.2 4.0 42 24-66 40-81 (106)
72 1iqt_A AUF1, heterogeneous nuc 25.9 61 0.0021 17.0 2.7 20 12-31 4-23 (75)
73 1k99_A Upstream binding factor 24.5 1.1E+02 0.0038 17.8 5.7 42 25-67 22-63 (99)
74 3bbz_A P protein, phosphoprote 24.4 87 0.003 16.5 2.9 26 46-71 5-30 (49)
75 3u2b_C Transcription factor SO 24.0 96 0.0033 16.9 4.7 40 25-66 14-53 (79)
76 1r4v_A Hypothetical protein AQ 22.8 1.5E+02 0.0051 19.7 4.5 31 24-54 138-168 (171)
77 2gzk_A Sex-determining region 22.8 1.5E+02 0.005 18.5 5.0 38 28-66 19-56 (159)
78 2xpn_B SPT6, chromatin structu 20.6 23 0.0008 16.0 0.2 9 9-17 5-13 (26)
No 1
>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A
Probab=99.90 E-value=3.9e-24 Score=127.75 Aligned_cols=68 Identities=32% Similarity=0.532 Sum_probs=62.1
Q ss_pred CCCccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc-HHHHHHHHHHHHHcCChhHHHHHhhhcc
Q 040915 3 LGTRGSLYEVLRVEPTTMISEIKMAYQSLAKVYHLDLSGN-GRDFIEIHKTYEMLSDPTARVVYDMSLV 70 (104)
Q Consensus 3 ~~~~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~-~~~f~~i~~Ay~~L~d~~~R~~YD~~~~ 70 (104)
|....+||+||||+++++.++||++|+++++++|||+++. .+.|+.|++||++|+||.+|..||..|.
T Consensus 4 m~~~~~~y~iLgl~~~a~~~eIk~ayr~l~~~~HPD~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~g~ 72 (73)
T 2och_A 4 MVKETGYYDVLGVKPDASDNELKKAYRKMALKFHPDKNPDGAEQFKQISQAYEVLSDEKKRQIYDQGGE 72 (73)
T ss_dssp --CCCCHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCTTCHHHHHHHHHHHHHHTSHHHHHHHHHTC-
T ss_pred ccCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCcCHHHHHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence 4567899999999999999999999999999999999876 7899999999999999999999999874
No 2
>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.90 E-value=6.9e-24 Score=128.27 Aligned_cols=69 Identities=36% Similarity=0.538 Sum_probs=64.1
Q ss_pred CCCccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc----HHHHHHHHHHHHHcCChhHHHHHhhhccc
Q 040915 3 LGTRGSLYEVLRVEPTTMISEIKMAYQSLAKVYHLDLSGN----GRDFIEIHKTYEMLSDPTARVVYDMSLVS 71 (104)
Q Consensus 3 ~~~~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~----~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~ 71 (104)
.+...|||+||||+++++.++||++|+++++++|||+++. .+.|+.|++||++|+||.+|..||.++..
T Consensus 3 ~~~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~ 75 (79)
T 2dn9_A 3 SGSSGDYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSDEVKRKQYDAYGSG 75 (79)
T ss_dssp SSCCSCHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCSSCTTHHHHHHHHHHHHHHHHSHHHHHHHHHSCCC
T ss_pred CCCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhccCc
Confidence 4567899999999999999999999999999999998764 68999999999999999999999998864
No 3
>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae}
Probab=99.90 E-value=4.5e-24 Score=132.76 Aligned_cols=70 Identities=31% Similarity=0.536 Sum_probs=64.3
Q ss_pred CCCccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCc-cHHHHHHHHHHHHHcCChhHHHHHhhhcccc
Q 040915 3 LGTRGSLYEVLRVEPTTMISEIKMAYQSLAKVYHLDLSG-NGRDFIEIHKTYEMLSDPTARVVYDMSLVSR 72 (104)
Q Consensus 3 ~~~~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~-~~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~ 72 (104)
|....|||+||||+++++.++||++|+++++++|||+++ ..+.|++|++||++|+||.+|..||.++...
T Consensus 4 m~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~ 74 (92)
T 2o37_A 4 MVKETKLYDLLGVSPSANEQELKKGYRKAALKYHPDKPTGDTEKFKEISEAFEILNDPQKREIYDQYGLEA 74 (92)
T ss_dssp CCSCCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCTTSTTCCHHHHHHHHHHHHHHTSHHHHHHHHHHCHHH
T ss_pred cccCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChHHHHHHHHHHHHHHCCHHHHHHHHHHCHHH
Confidence 345689999999999999999999999999999999975 4789999999999999999999999988743
No 4
>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.90 E-value=6.8e-24 Score=128.08 Aligned_cols=70 Identities=31% Similarity=0.468 Sum_probs=64.6
Q ss_pred CCCCccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc---HHHHHHHHHHHHHcCChhHHHHHhhhccc
Q 040915 2 ALGTRGSLYEVLRVEPTTMISEIKMAYQSLAKVYHLDLSGN---GRDFIEIHKTYEMLSDPTARVVYDMSLVS 71 (104)
Q Consensus 2 ~~~~~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~---~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~ 71 (104)
+.+...|||+||||+++++.++||++|+++++++|||+++. .+.|+.|++||++|+||.+|..||..+..
T Consensus 2 s~~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~ 74 (78)
T 2ctp_A 2 SSGSSGDYYEILGVSRGASDEDLKKAYRRLALKFHPDKNHAPGATEAFKAIGTAYAVLSNPEKRKQYDQFGSG 74 (78)
T ss_dssp CCSCSCCHHHHHTCCTTCCHHHHHHHHHHHHTTSCTTTCSSHHHHHHHHHHHHHHHHHTSHHHHHHHHHTCSC
T ss_pred CCCCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHHCCHHHHHHHHHcCcc
Confidence 34667899999999999999999999999999999999854 77999999999999999999999998875
No 5
>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.90 E-value=1e-23 Score=130.17 Aligned_cols=69 Identities=38% Similarity=0.516 Sum_probs=64.2
Q ss_pred CCCccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc---HHHHHHHHHHHHHcCChhHHHHHhhhccc
Q 040915 3 LGTRGSLYEVLRVEPTTMISEIKMAYQSLAKVYHLDLSGN---GRDFIEIHKTYEMLSDPTARVVYDMSLVS 71 (104)
Q Consensus 3 ~~~~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~---~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~ 71 (104)
.+...|||+||||+++++.++||++|+++++++|||+++. .+.|+.|++||++|+||.+|..||..+..
T Consensus 3 ~~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~ 74 (88)
T 2ctr_A 3 SGSSGSYYDILGVPKSASERQIKKAFHKLAMKYHPDKNKSPDAEAKFREIAEAYETLSDANRRKEYDTLGHS 74 (88)
T ss_dssp SCCCCSHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCCSHHHHHHHHHHHHHHHHHHSSHHHHHHHHTCHH
T ss_pred CCCCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCChHHHHHHHHHHHHHHHHCCHHHHHHHHHhCcc
Confidence 4567899999999999999999999999999999999875 67999999999999999999999998873
No 6
>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.89 E-value=1.3e-23 Score=132.18 Aligned_cols=70 Identities=33% Similarity=0.495 Sum_probs=64.0
Q ss_pred CCccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc----HHHHHHHHHHHHHcCChhHHHHHhhhccccc
Q 040915 4 GTRGSLYEVLRVEPTTMISEIKMAYQSLAKVYHLDLSGN----GRDFIEIHKTYEMLSDPTARVVYDMSLVSRR 73 (104)
Q Consensus 4 ~~~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~----~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~~ 73 (104)
....+||+||||+++++.++||++|+++++++|||+++. .+.|+.|++||+||+||.+|..||..+....
T Consensus 14 ~~~~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~l~~~e 87 (99)
T 2yua_A 14 YSRTALYDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGSAEAAERFTRISQAYVVLGSATLRRKYDRGLLSDE 87 (99)
T ss_dssp SCSSHHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTCSSCSHHHHHHHHHHHHHHHTTSHHHHHHHHHTCCCHH
T ss_pred CCccCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHhccccc
Confidence 346799999999999999999999999999999999864 7799999999999999999999999887543
No 7
>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1
Probab=99.89 E-value=2.6e-23 Score=125.24 Aligned_cols=65 Identities=32% Similarity=0.457 Sum_probs=61.3
Q ss_pred cCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc---HHHHHHHHHHHHHcCChhHHHHHhhhccc
Q 040915 7 GSLYEVLRVEPTTMISEIKMAYQSLAKVYHLDLSGN---GRDFIEIHKTYEMLSDPTARVVYDMSLVS 71 (104)
Q Consensus 7 ~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~---~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~ 71 (104)
.|||+||||+++++.++||++|+++++++|||+++. .+.|+.|++||++|+||.+|..||.++..
T Consensus 3 ~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~ 70 (77)
T 1hdj_A 3 KDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDPRKREIFDRYGEE 70 (77)
T ss_dssp CCSHHHHTCCTTCCHHHHHHHHHHHHHTTCTTTCCCTTHHHHHHHHHHHHHHTTCHHHHHHHHHTCGG
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHHCCHHHHHHHHHHccc
Confidence 699999999999999999999999999999998753 78999999999999999999999998864
No 8
>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.89 E-value=3.2e-23 Score=126.12 Aligned_cols=68 Identities=34% Similarity=0.446 Sum_probs=62.8
Q ss_pred CCccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc-----HHHHHHHHHHHHHcCChhHHHHHhhhccc
Q 040915 4 GTRGSLYEVLRVEPTTMISEIKMAYQSLAKVYHLDLSGN-----GRDFIEIHKTYEMLSDPTARVVYDMSLVS 71 (104)
Q Consensus 4 ~~~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~-----~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~ 71 (104)
+...|||+||||+++++.++||++|+++++++|||+++. .+.|+.|++||++|+||.+|..||.++..
T Consensus 6 ~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~ 78 (82)
T 2ej7_A 6 SGMVDYYEVLDVPRQASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVLSDAKKRDIYDRYGSG 78 (82)
T ss_dssp SSSCCHHHHTTCCTTCCHHHHHHHHHHHHTTSCTTTCSTTHHHHHHHHHHHHHHHHHHSSTTHHHHHHHTCCC
T ss_pred CCCcCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHHCCHHHHHHHHHcCcc
Confidence 456799999999999999999999999999999999865 46899999999999999999999998864
No 9
>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus}
Probab=99.89 E-value=3.4e-23 Score=127.80 Aligned_cols=69 Identities=35% Similarity=0.465 Sum_probs=63.6
Q ss_pred CCccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc---HHHHHHHHHHHHHcCChhHHHHHhhhcccc
Q 040915 4 GTRGSLYEVLRVEPTTMISEIKMAYQSLAKVYHLDLSGN---GRDFIEIHKTYEMLSDPTARVVYDMSLVSR 72 (104)
Q Consensus 4 ~~~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~---~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~ 72 (104)
....|||+||||+++++.++||++|+++++++|||+++. .+.|+.|++||++|+||.+|..||.++...
T Consensus 14 ~~~~d~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~~ 85 (88)
T 2cug_A 14 ALDFDPYRVLGVSRTASQADIKKAYKKLAREWHPDKNKDPGAEDRFIQISKAYEILSNEEKRTNYDHYGSGP 85 (88)
T ss_dssp SSSSCHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTCCSTTHHHHHHHHHHHHHHHHSHHHHHHHHHHTTCC
T ss_pred cCCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHHCCHHHHHHHHHcCCCC
Confidence 346799999999999999999999999999999998763 789999999999999999999999998753
No 10
>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.89 E-value=4.8e-23 Score=127.92 Aligned_cols=68 Identities=32% Similarity=0.499 Sum_probs=62.8
Q ss_pred CCccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc-----HHHHHHHHHHHHHcCChhHHHHHhhhccc
Q 040915 4 GTRGSLYEVLRVEPTTMISEIKMAYQSLAKVYHLDLSGN-----GRDFIEIHKTYEMLSDPTARVVYDMSLVS 71 (104)
Q Consensus 4 ~~~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~-----~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~ 71 (104)
....|||+||||+++++.++||++|+++++++|||+++. .+.|+.|++||++|+||.+|..||..+..
T Consensus 6 ~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~ 78 (92)
T 2dmx_A 6 SGMANYYEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVLSDSKKRSLYDRAGCD 78 (92)
T ss_dssp CCCCCHHHHHTCCTTCCTTHHHHHHHHHHHHTCTTTCSSCSHHHHHHHHHHHHHHHHHHSHHHHHHHHHHCSC
T ss_pred CCCcCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCccHHHHHHHHHHHHHHHHHHCCHHHHHHHHHhCcc
Confidence 446799999999999999999999999999999998764 57999999999999999999999998864
No 11
>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1
Probab=99.88 E-value=1.3e-23 Score=130.79 Aligned_cols=69 Identities=26% Similarity=0.522 Sum_probs=63.4
Q ss_pred CccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCc----------cHHHHHHHHHHHHHcCChhHHHHHhhhccccc
Q 040915 5 TRGSLYEVLRVEPTTMISEIKMAYQSLAKVYHLDLSG----------NGRDFIEIHKTYEMLSDPTARVVYDMSLVSRR 73 (104)
Q Consensus 5 ~~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~----------~~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~~ 73 (104)
...|||+||||+++++.++||++|+++++++|||+++ +.+.|+.|++||+||+||.+|..||..+.++.
T Consensus 14 ~~~~~y~iLgv~~~as~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l~~~~ 92 (94)
T 1wjz_A 14 LKKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNEETKKKYDLQRSGPS 92 (94)
T ss_dssp SCSCHHHHTTCCTTCCHHHHHHHHHHTTSSSCSTTCCTTCCHHHHHHHHHHHHHHHHHHHHHSSSSHHHHHHHHSCCSC
T ss_pred CCCChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCChhhhHHHHHHHHHHHHHHHHHCCHHHHHHHHHHccCCC
Confidence 4679999999999999999999999999999999965 25799999999999999999999999998644
No 12
>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.88 E-value=6e-23 Score=131.81 Aligned_cols=68 Identities=21% Similarity=0.282 Sum_probs=63.4
Q ss_pred CCccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc----HHHHHHHHHHHHHcCChhHHHHHhhhccc
Q 040915 4 GTRGSLYEVLRVEPTTMISEIKMAYQSLAKVYHLDLSGN----GRDFIEIHKTYEMLSDPTARVVYDMSLVS 71 (104)
Q Consensus 4 ~~~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~----~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~ 71 (104)
....|||+||||+++++.++||+|||++++++|||+++. .+.|++|++||+||+||.+|..||..+..
T Consensus 17 ~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~~ 88 (112)
T 2ctq_A 17 EDTEDYYTLLGCDELSSVEQILAEFKVRALECHPDKHPENPKAVETFQKLQKAKEILTNEESRARYDHWRRS 88 (112)
T ss_dssp CCCCCHHHHTTCCTTSCHHHHHHHHHHHHHTTCTTTCTTCSTHHHHHHHHHHHHHHHHSHHHHHHHHHHHHH
T ss_pred cCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHHHHhhhh
Confidence 446899999999999999999999999999999998874 78999999999999999999999998874
No 13
>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.87 E-value=2.6e-22 Score=128.32 Aligned_cols=90 Identities=24% Similarity=0.296 Sum_probs=73.0
Q ss_pred CCccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc----HHHHHHHHHHHHHcCChhHHHHHhhhcccccCCCCCC
Q 040915 4 GTRGSLYEVLRVEPTTMISEIKMAYQSLAKVYHLDLSGN----GRDFIEIHKTYEMLSDPTARVVYDMSLVSRRRTRTTS 79 (104)
Q Consensus 4 ~~~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~----~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~~~~~~~~ 79 (104)
....+||+||||+++++.++||++|+++++++|||+++. .+.|+.|++||++|+||.+|..||..+.....
T Consensus 14 ~~~~~~Y~vLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~g~~~~~----- 88 (109)
T 2ctw_A 14 TSGESLYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNAHAILTDATKRNIYDKYGSLGLY----- 88 (109)
T ss_dssp SCSCCHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTSTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHTCHHHHH-----
T ss_pred CCCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHcCHHHHHHHHHhcccccc-----
Confidence 346799999999999999999999999999999999875 67999999999999999999999998863211
Q ss_pred CCCCCCCCCCCCCcHHHhHHhcCC
Q 040915 80 FGCLCWSGFHPTRRWEIIVEENGD 103 (104)
Q Consensus 80 ~~~~~~~~~~~~~~w~~~~~~~~~ 103 (104)
....+....|..++...+.
T Consensus 89 -----~~~~~~~~~~~~~~~~~~~ 107 (109)
T 2ctw_A 89 -----VAEQFGEENVNTYFVSGPS 107 (109)
T ss_dssp -----HHHHTCTTHHHHHHHSSSC
T ss_pred -----cccccCCcchHHHhhcCCC
Confidence 0011223478887776653
No 14
>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon, chaperone; NMR {Homo sapiens}
Probab=99.87 E-value=1.4e-22 Score=127.77 Aligned_cols=65 Identities=34% Similarity=0.504 Sum_probs=60.9
Q ss_pred cCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc-----HHHHHHHHHHHHHcCChhHHHHHhhhccc
Q 040915 7 GSLYEVLRVEPTTMISEIKMAYQSLAKVYHLDLSGN-----GRDFIEIHKTYEMLSDPTARVVYDMSLVS 71 (104)
Q Consensus 7 ~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~-----~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~ 71 (104)
.|||+||||+++++.++||++|+++++++|||+++. .+.|+.|++||++|+||.+|..||..+..
T Consensus 2 ~d~Y~iLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~~~a~~~f~~I~~AY~vL~d~~~R~~YD~~g~~ 71 (99)
T 2lgw_A 2 ASYYEILDVPRSASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHKREIYDRYGRE 71 (99)
T ss_dssp CCHHHHSSSCTTSCHHHHHHHHHHHHHHTSTTTCCSCCHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHC
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCccHHHHHHHHHHHHHHHHHHCCHHHHHHHHHhCcc
Confidence 589999999999999999999999999999998865 57999999999999999999999998763
No 15
>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein; 3.20A {Simian virus 40} SCOP: a.2.3.1
Probab=99.86 E-value=2e-24 Score=139.46 Aligned_cols=69 Identities=16% Similarity=0.147 Sum_probs=63.6
Q ss_pred ccCcccccccCCCCCH--HHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHcCChhHHHHHhhhcccccC
Q 040915 6 RGSLYEVLRVEPTTMI--SEIKMAYQSLAKVYHLDLSGNGRDFIEIHKTYEMLSDPTARVVYDMSLVSRRR 74 (104)
Q Consensus 6 ~~d~Y~iLgv~~~a~~--~~Ik~ayr~l~~~~hPD~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~~~ 74 (104)
..++|+||||+++++. ++||+|||++++++|||+++..++|++|++||+||+||.+|..||.++.....
T Consensus 7 ~~~~Y~iLgv~~~as~~~~eIk~aYr~la~~~HPDk~~~~e~f~~I~~AYevL~d~~~R~~~~~~~~~w~~ 77 (114)
T 1gh6_A 7 SLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDEEKMKKMNTLYKKMEDGVKYAHQPDFGGFWDA 77 (114)
T ss_dssp HHHHHHHTTCCTTSCSCHHHHHHHHHHTTTTCCTTTCCTTTTTHHHHHHHHHHHHHHHSCCSSCCSCCCCC
T ss_pred hhhHHHHcCCCCCCCcCHHHHHHHHHHHHHHHCCCCCccHHHHHHHHHHHHHHCCHHHHHHhhhccccccc
Confidence 3589999999999998 99999999999999999999999999999999999999999999987764443
No 16
>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, Pro structure initiative; 1.68A {Caenorhabditis elegans}
Probab=99.86 E-value=3.1e-22 Score=127.77 Aligned_cols=68 Identities=31% Similarity=0.378 Sum_probs=63.0
Q ss_pred CCccCcccccccCCCC-CHHHHHHHHHHHHHHhCCCCCcc-------HHHHHHHHHHHHHcCChhHHHHHhhhccc
Q 040915 4 GTRGSLYEVLRVEPTT-MISEIKMAYQSLAKVYHLDLSGN-------GRDFIEIHKTYEMLSDPTARVVYDMSLVS 71 (104)
Q Consensus 4 ~~~~d~Y~iLgv~~~a-~~~~Ik~ayr~l~~~~hPD~~~~-------~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~ 71 (104)
....|||+||||++++ +.++||+||+++++++|||+++. .+.|++|++||++|+||.+|..||..+..
T Consensus 12 ~~~~~~y~iLgv~~~a~s~~eIk~aYr~l~~~~HPDk~~~~~~~~~a~~~f~~i~~AY~~L~d~~~R~~YD~~~~~ 87 (109)
T 2qsa_A 12 CGLENCYDVLEVNREEFDKQKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVIATAYETLKDDEAKTNYDYYLDH 87 (109)
T ss_dssp TTTSCHHHHTTCCGGGCCHHHHHHHHHHHHHHTCGGGCCSHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHC
T ss_pred cCCCCHHHHcCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccccHHHHHHHHHHHHHHHHHCCHHHHHHHHHhccC
Confidence 4568999999999999 99999999999999999998764 67999999999999999999999998863
No 17
>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A
Probab=99.86 E-value=1.5e-22 Score=128.17 Aligned_cols=66 Identities=36% Similarity=0.532 Sum_probs=61.8
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc----HHHHHHHHHHHHHcCChhHHHHHhhhccc
Q 040915 6 RGSLYEVLRVEPTTMISEIKMAYQSLAKVYHLDLSGN----GRDFIEIHKTYEMLSDPTARVVYDMSLVS 71 (104)
Q Consensus 6 ~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~----~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~ 71 (104)
..|||+||||+++++.++||++|+++++++|||+++. .+.|++|++||++|+||.+|..||..+..
T Consensus 2 ~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~ 71 (103)
T 1bq0_A 2 KQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAAYDQYGHA 71 (103)
T ss_dssp CCCSTTTTSSCSSCCHHHHHHHHHHHHTTTCTTTCTTTCTHHHHHHHHTTTTTSTTCSHHHHHTTTSTTT
T ss_pred CCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHHHHHhhh
Confidence 4699999999999999999999999999999998763 67999999999999999999999998874
No 18
>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens}
Probab=99.85 E-value=1.2e-21 Score=131.72 Aligned_cols=68 Identities=28% Similarity=0.544 Sum_probs=62.0
Q ss_pred CCccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc----------HHHHHHHHHHHHHcCChhHHHHHhhhccc
Q 040915 4 GTRGSLYEVLRVEPTTMISEIKMAYQSLAKVYHLDLSGN----------GRDFIEIHKTYEMLSDPTARVVYDMSLVS 71 (104)
Q Consensus 4 ~~~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~----------~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~ 71 (104)
....|||+||||+++++.++||+|||++++++|||+++. .+.|+.|++||+||+||.+|..||..+.+
T Consensus 7 ~~~~~~y~iLgv~~~a~~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~a~~~f~~i~~Ay~~L~dp~~R~~Yd~~~~~ 84 (155)
T 2l6l_A 7 MPKKDWYSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKILGNEETKREYDLQRCE 84 (155)
T ss_dssp CCCSHHHHHHTCCTTCCHHHHHHHHHHHHHHHSCCCCCCCCTTHHHHHHHHHHHHHHHHHHHSSSHHHHCHHHHHHHH
T ss_pred CCCCChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCchhHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHcch
Confidence 346799999999999999999999999999999998754 37999999999999999999999987763
No 19
>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase regulat protein complex; 3.10A {Simian virus 40} PDB: 2pkg_C
Probab=99.82 E-value=5.3e-22 Score=136.16 Aligned_cols=69 Identities=17% Similarity=0.188 Sum_probs=60.5
Q ss_pred ccCcccccccCCCCC--HHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHcCChhHHHHHhhhcccccC
Q 040915 6 RGSLYEVLRVEPTTM--ISEIKMAYQSLAKVYHLDLSGNGRDFIEIHKTYEMLSDPTARVVYDMSLVSRRR 74 (104)
Q Consensus 6 ~~d~Y~iLgv~~~a~--~~~Ik~ayr~l~~~~hPD~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~~~ 74 (104)
..++|+||||+++|+ .++||+|||++++++|||++++.++|++|++||++|+||.+|..||.++.....
T Consensus 10 ~~d~Y~vLGl~~~as~~~~eIKkAYRkLa~~~HPDk~~~~e~F~~I~~AYevLsdp~kR~~YD~~G~~w~~ 80 (174)
T 2pf4_E 10 SLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDEEKMKKMNTLYKKMEDGVKYAHQPDFGGFWDA 80 (174)
T ss_dssp HHHHHHTTTCCGGGTTCHHHHHHHHHHHGGGCSCC---CCTTTTHHHHHHHHHHHHHHHHTSCGGGGCC--
T ss_pred cccHHHHcCCCCCCCcCHHHHHHHHHHHHHHHCcCCCCCHHHHHHHHHHHHHhCCHHHHHHHhccCCcccc
Confidence 468999999999998 699999999999999999999999999999999999999999999999975443
No 20
>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}
Probab=99.82 E-value=1e-20 Score=130.97 Aligned_cols=65 Identities=34% Similarity=0.483 Sum_probs=61.0
Q ss_pred cCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc----HHHHHHHHHHHHHcCChhHHHHHhhhccc
Q 040915 7 GSLYEVLRVEPTTMISEIKMAYQSLAKVYHLDLSGN----GRDFIEIHKTYEMLSDPTARVVYDMSLVS 71 (104)
Q Consensus 7 ~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~----~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~ 71 (104)
.|||+||||+++++.++||+|||++++++|||+++. .++|+.|++||++|+||.+|..||.++..
T Consensus 2 ~~~y~~l~~~~~a~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~f~~i~~Ay~~L~~~~~r~~yd~~~~~ 70 (210)
T 3apq_A 2 QNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKYDKYGEK 70 (210)
T ss_dssp CCHHHHHTCCTTCCHHHHHHHHHHHHHHHCGGGCTTCTTHHHHHHHHHHHHHHHTSHHHHHHHHHHTTT
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHhccc
Confidence 589999999999999999999999999999998753 67999999999999999999999998864
No 21
>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.81 E-value=8.6e-21 Score=117.54 Aligned_cols=59 Identities=20% Similarity=0.263 Sum_probs=54.4
Q ss_pred CccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCc---cHHHHHHHHHHHHHcCChhHHH
Q 040915 5 TRGSLYEVLRVEPTTMISEIKMAYQSLAKVYHLDLSG---NGRDFIEIHKTYEMLSDPTARV 63 (104)
Q Consensus 5 ~~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~---~~~~f~~i~~Ay~~L~d~~~R~ 63 (104)
...|||+||||+++++.++||++||++++++|||+++ +.+.|++|++||++|+||.+|.
T Consensus 25 ~~~~~y~iLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~~~~~f~~i~~Ay~~L~d~~~R~ 86 (90)
T 2ys8_A 25 NSKDSWDMLGVKPGASRDEVNKAYRKLAVLLHPDKCVAPGSEDAFKAVVNARTALLKNIKSG 86 (90)
T ss_dssp TCSSHHHHHTCCTTCCHHHHHHHHHHHHHHHCTTTCCCTTHHHHHHHHHHHHHHHHHHHCCS
T ss_pred cCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHHCCccccc
Confidence 3579999999999999999999999999999999984 4789999999999999998774
No 22
>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1
Probab=99.81 E-value=5.4e-21 Score=115.98 Aligned_cols=60 Identities=15% Similarity=0.259 Sum_probs=56.7
Q ss_pred ccCcccccccCCC--CCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHcCChhHHHHH
Q 040915 6 RGSLYEVLRVEPT--TMISEIKMAYQSLAKVYHLDLSGNGRDFIEIHKTYEMLSDPTARVVY 65 (104)
Q Consensus 6 ~~d~Y~iLgv~~~--a~~~~Ik~ayr~l~~~~hPD~~~~~~~f~~i~~Ay~~L~d~~~R~~Y 65 (104)
..++|+||||+++ ++.++||+|||++++++|||++++.+.|++|++||++|+++.+|..+
T Consensus 10 ~~~~y~iLgl~~~~~a~~~eIk~aYr~la~~~HPDk~~~~~~f~~i~~AYe~L~~~~~r~~~ 71 (79)
T 1faf_A 10 KERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGGSHALMQELNSLWGTFKTEVYNLRM 71 (79)
T ss_dssp HHHHHHHHTCCSSSTTCHHHHHHHHHHHHHHSSGGGSCCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCHHHHHHHHHHHHHHhhHHHHHHH
Confidence 3579999999999 99999999999999999999999999999999999999999999873
No 23
>3hho_A CO-chaperone protein HSCB homolog; structural genomics, IDP01304, center for structural genomics of infectious diseases, CSGI; 2.15A {Vibrio cholerae}
Probab=99.81 E-value=1.4e-20 Score=129.03 Aligned_cols=68 Identities=22% Similarity=0.298 Sum_probs=60.8
Q ss_pred CccCcccccccCCCCC--HHHHHHHHHHHHHHhCCCCCcc---------HHHHHHHHHHHHHcCChhHHHHHhhhcccc
Q 040915 5 TRGSLYEVLRVEPTTM--ISEIKMAYQSLAKVYHLDLSGN---------GRDFIEIHKTYEMLSDPTARVVYDMSLVSR 72 (104)
Q Consensus 5 ~~~d~Y~iLgv~~~a~--~~~Ik~ayr~l~~~~hPD~~~~---------~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~ 72 (104)
..+|||+||||+++++ ..+||++||++++++|||+++. .+.|+.|++||+||+||.+|..||..+.+.
T Consensus 2 ~~~d~Y~iLgl~~~a~id~~eIk~aYr~l~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vL~dp~~R~~Yd~~l~g~ 80 (174)
T 3hho_A 2 NAMNYFELFGLPIQFELDGSLLSSQFRALQKRFHPDNFATASERDRLMAVQQAAQINDAYQTLKDPLRRAEYLLSLQGI 80 (174)
T ss_dssp --CCHHHHTTCCSSSCCCHHHHHHHHHHHHHHHCGGGSTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHTTC
T ss_pred CCCCHHHHcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHccCC
Confidence 4679999999999987 9999999999999999998653 368999999999999999999999988753
No 24
>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1
Probab=99.80 E-value=2.7e-20 Score=127.34 Aligned_cols=66 Identities=18% Similarity=0.307 Sum_probs=60.4
Q ss_pred cCcccccccCCCC--CHHHHHHHHHHHHHHhCCCCCcc---------HHHHHHHHHHHHHcCChhHHHHHhhhcccc
Q 040915 7 GSLYEVLRVEPTT--MISEIKMAYQSLAKVYHLDLSGN---------GRDFIEIHKTYEMLSDPTARVVYDMSLVSR 72 (104)
Q Consensus 7 ~d~Y~iLgv~~~a--~~~~Ik~ayr~l~~~~hPD~~~~---------~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~ 72 (104)
+|||+||||++++ +..+||++||++++++|||+++. .+.|+.|++||+||+||.+|..||..+.+.
T Consensus 1 ~d~y~lLgl~~~a~i~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vL~dp~~R~~Yd~~l~g~ 77 (171)
T 1fpo_A 1 MDYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRHPLMRAEYLLSLHGF 77 (171)
T ss_dssp CHHHHHTTCCSSSCCCHHHHHHHHHHHHHHTCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHTTTC
T ss_pred CCHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHhcCC
Confidence 4899999999999 99999999999999999998654 358999999999999999999999988753
No 25
>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}
Probab=99.78 E-value=1.7e-19 Score=126.65 Aligned_cols=67 Identities=16% Similarity=0.347 Sum_probs=60.0
Q ss_pred CccCcccccccCCC--CCHHHHHHHHHHHHHHhCCCCCcc---------HHHHHHHHHHHHHcCChhHHHHHhhhccc
Q 040915 5 TRGSLYEVLRVEPT--TMISEIKMAYQSLAKVYHLDLSGN---------GRDFIEIHKTYEMLSDPTARVVYDMSLVS 71 (104)
Q Consensus 5 ~~~d~Y~iLgv~~~--a~~~~Ik~ayr~l~~~~hPD~~~~---------~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~ 71 (104)
...|||+||||++. ++..+||++||++++++|||+++. .+.|+.|++||+||+||.+|..||..+.+
T Consensus 41 ~~~d~y~lLgv~~~~~a~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vLsdp~~R~~Yd~~l~G 118 (207)
T 3bvo_A 41 PTRDYFSLMDCNRSFRVDTAKLQHRYQQLQRLVHPDFFSQRSQTEKDFSEKHSTLVNDAYKTLLAPLSRGLYLLKLHG 118 (207)
T ss_dssp TTCCHHHHTTSCSCSCCCHHHHHHHHHHHHHHHCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHTT
T ss_pred CCCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHhcC
Confidence 46799999999986 789999999999999999998753 35799999999999999999999987664
No 26
>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A
Probab=99.77 E-value=1.7e-20 Score=139.42 Aligned_cols=65 Identities=34% Similarity=0.561 Sum_probs=0.0
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc---HHHHHHHHHHHHHcCChhHHHHHhhhcc
Q 040915 6 RGSLYEVLRVEPTTMISEIKMAYQSLAKVYHLDLSGN---GRDFIEIHKTYEMLSDPTARVVYDMSLV 70 (104)
Q Consensus 6 ~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~---~~~f~~i~~Ay~~L~d~~~R~~YD~~~~ 70 (104)
..|||+||||+++|+.++||+|||++++++|||+++. .++|++|++||++|+||.+|..||.++.
T Consensus 27 ~~d~Y~vLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~ 94 (329)
T 3lz8_A 27 LKDYYAILGVQPTDDLKTIKTAYRRLARKYHPDVSKENDAEAKFKDLAEAWEVLKDEQRRAEYDQLWQ 94 (329)
T ss_dssp --------------------------------------------------------------------
T ss_pred ccCHHHHcCcCCCCCHHHHHHHHHHHHHHHCCCCCCChHHHHHHHHHHHHHHHhhhhhhhcccchhhc
Confidence 4799999999999999999999999999999998754 6799999999999999999999999854
No 27
>2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}
Probab=99.76 E-value=1.3e-19 Score=107.82 Aligned_cols=57 Identities=14% Similarity=0.146 Sum_probs=53.0
Q ss_pred ccCcccccccCC-CCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHcCChhHH
Q 040915 6 RGSLYEVLRVEP-TTMISEIKMAYQSLAKVYHLDLSGNGRDFIEIHKTYEMLSDPTAR 62 (104)
Q Consensus 6 ~~d~Y~iLgv~~-~a~~~~Ik~ayr~l~~~~hPD~~~~~~~f~~i~~Ay~~L~d~~~R 62 (104)
..++|+||||++ +++.++||++||++++++|||++++.+.|++|++||++|+++..|
T Consensus 13 ~~~~y~iLgl~~~~a~~~eIk~ayr~l~~~~HPDk~g~~~~f~~i~~Aye~L~~~~~r 70 (71)
T 2guz_A 13 SKEALQILNLTENTLTKKKLKEVHRKIMLANHPDKGGSPFLATKINEAKDFLEKRGIS 70 (71)
T ss_dssp HHHHHHHTTCCTTTCCHHHHHHHHHHHHHHHCGGGTCCHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHhhhhhc
Confidence 358999999999 799999999999999999999998899999999999999987654
No 28
>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A
Probab=99.75 E-value=4.9e-19 Score=122.10 Aligned_cols=68 Identities=22% Similarity=0.392 Sum_probs=61.1
Q ss_pred CCccCccccc------ccCC-CCCHHHHHHHHHHHHHHhCCCCCc-cHHHHHHHHHHHHHcCChhHHHHHhhhc-cc
Q 040915 4 GTRGSLYEVL------RVEP-TTMISEIKMAYQSLAKVYHLDLSG-NGRDFIEIHKTYEMLSDPTARVVYDMSL-VS 71 (104)
Q Consensus 4 ~~~~d~Y~iL------gv~~-~a~~~~Ik~ayr~l~~~~hPD~~~-~~~~f~~i~~Ay~~L~d~~~R~~YD~~~-~~ 71 (104)
....|||+|| |+++ +++..+||++||++++++|||+++ +.+.|+.|++||+||+||.+|..||..+ .+
T Consensus 8 ~~~~d~y~ll~~~~p~~~~~~~a~~~eIk~aYr~la~~~HPDk~~~a~~~f~~i~~AY~vL~dp~~R~~Yd~~l~~g 84 (181)
T 3uo3_A 8 RFTSTFYELFPKTFPKKLPIWTIDQSRLRKEYRQLQAQHHPDMAQQGSEQSSTLNQAYHTLKDPLRRSQYMLKLLRN 84 (181)
T ss_dssp CCSCCTGGGCTTTCTTCSCCSCCCHHHHHHHHHHHHHTCCTTSCCSCSSGGGSHHHHHHHHHSHHHHHHHHHHHHHC
T ss_pred CCCCCHHHHhccccccCCCCCCCCHHHHHHHHHHHHHHhCcCCCccHHHHHHHHHHHHHHHcChHHHHHHHHHHHhC
Confidence 3457999999 4665 899999999999999999999987 5789999999999999999999999987 54
No 29
>1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1
Probab=99.75 E-value=2.6e-19 Score=110.62 Aligned_cols=58 Identities=16% Similarity=0.059 Sum_probs=53.1
Q ss_pred CccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc-----HHHHHHHHHHHHHcCChhHH
Q 040915 5 TRGSLYEVLRVEPTTMISEIKMAYQSLAKVYHLDLSGN-----GRDFIEIHKTYEMLSDPTAR 62 (104)
Q Consensus 5 ~~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~-----~~~f~~i~~Ay~~L~d~~~R 62 (104)
...++|+||||+++++.++||+|||++++++|||+++. .+.|++|++||++|++...|
T Consensus 14 ~~~~~y~vLgv~~~as~~eIKkaYrkla~~~HPDk~~~~~~~a~~~F~~I~~AYevL~~~~~r 76 (88)
T 1iur_A 14 ILKEVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRLEKQAFL 76 (88)
T ss_dssp CHHHHHHHHHHTTSSCSHHHHHHHHHHHHHTCTTTSSSCHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred cHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHHHHhhccc
Confidence 34689999999999999999999999999999999875 57999999999999998666
No 30
>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP: a.2.3.1 PDB: 1xi5_J
Probab=99.73 E-value=5.8e-19 Score=121.78 Aligned_cols=60 Identities=13% Similarity=0.267 Sum_probs=55.0
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc-------HHHHHHHHHHHHHcCChhHHHHH
Q 040915 6 RGSLYEVLRVEPTTMISEIKMAYQSLAKVYHLDLSGN-------GRDFIEIHKTYEMLSDPTARVVY 65 (104)
Q Consensus 6 ~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~-------~~~f~~i~~Ay~~L~d~~~R~~Y 65 (104)
..++|+||||++.++.++||+|||++++++|||+++. .+.|+.|++||++|+|+.+|..|
T Consensus 116 ~~d~Y~vLgv~~~As~~eIKkAYRklal~~HPDK~~~~~~e~~A~~~F~~I~eAYevLsD~~kR~~Y 182 (182)
T 1n4c_A 116 GETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQGQKPLY 182 (182)
T ss_dssp TCCCCCCCCGGGGSSHHHHHHHHHHHHHHTCGGGGSSCTTHHHHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred ccchhhcCCCCCCCCHHHHHHHHHHHHHHHCcCcCCCcchHHHHHHHHHHHHHHHHHHCCHHhhhhC
Confidence 3699999999999999999999999999999998653 56999999999999999999766
No 31
>3ag7_A Putative uncharacterized protein F9E10.5; J-domain, AN auxilin-like J-domain containing protein, JAC1, chloroplast accumulation response; 1.80A {Arabidopsis thaliana}
Probab=99.72 E-value=1.8e-18 Score=110.14 Aligned_cols=55 Identities=11% Similarity=0.137 Sum_probs=49.6
Q ss_pred CccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc-----------HHHHHHHHHHHHHcCChh
Q 040915 5 TRGSLYEVLRVEPTTMISEIKMAYQSLAKVYHLDLSGN-----------GRDFIEIHKTYEMLSDPT 60 (104)
Q Consensus 5 ~~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~-----------~~~f~~i~~Ay~~L~d~~ 60 (104)
...|||+|||++. |+.++||+|||++++++|||+++. .++|+.|++||++|+|+.
T Consensus 39 ~~~d~Y~vl~~~~-As~~eIKkAYRklal~~HPDK~~~~~~~~e~~~~A~~~F~~I~~AYevLsd~~ 104 (106)
T 3ag7_A 39 SGSGWKPVPLMDM-IEGNAVRKSYQRALLILHPDKLQQKGASANQKYMAEKVFELLQEAWDHFNTLG 104 (106)
T ss_dssp TTSCCCCCCGGGS-CSHHHHHHHHHHHHHHHCHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred ccCCHHHHcCCCC-CCHHHHHHHHHHHHHHHCcCcCCCcccchhhHHHHHHHHHHHHHHHHHHcCcc
Confidence 4569999999996 999999999999999999998642 579999999999999985
No 32
>2qwo_B Putative tyrosine-protein phosphatase auxilin; chaperone-cochaperone complex, ATP-binding, nucleotide-bindi nucleus, phosphorylation, stress response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B* 2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A
Probab=99.69 E-value=3.7e-18 Score=106.23 Aligned_cols=52 Identities=12% Similarity=0.206 Sum_probs=47.6
Q ss_pred cCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc-------HHHHHHHHHHHHHcCC
Q 040915 7 GSLYEVLRVEPTTMISEIKMAYQSLAKVYHLDLSGN-------GRDFIEIHKTYEMLSD 58 (104)
Q Consensus 7 ~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~-------~~~f~~i~~Ay~~L~d 58 (104)
.++|++|||++.++.++||+|||++++++|||++++ .+.|+.|++||+||.+
T Consensus 33 ~~~y~~Lgv~~~as~~eIKkAYRklal~~HPDK~~~~~~~~~A~~~F~~i~eAyevL~~ 91 (92)
T 2qwo_B 33 ETKWKPVGMADLVTPEQVKKVYRKAVLVVHPCKATGQPYEQYAKMIFMELNDAWSEFEN 91 (92)
T ss_dssp CCSCCCCCGGGSSSHHHHHHHHHHHHHHTCHHHHTTSTTHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCeecCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchhHhHHHHHHHHHHHHHHHHHh
Confidence 589999999999999999999999999999998653 5689999999999964
No 33
>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}
Probab=99.68 E-value=3.4e-18 Score=136.84 Aligned_cols=67 Identities=33% Similarity=0.460 Sum_probs=40.8
Q ss_pred CCccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc----HHHHHHHHHHHHHcCChhHHHHHhhhcc
Q 040915 4 GTRGSLYEVLRVEPTTMISEIKMAYQSLAKVYHLDLSGN----GRDFIEIHKTYEMLSDPTARVVYDMSLV 70 (104)
Q Consensus 4 ~~~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~----~~~f~~i~~Ay~~L~d~~~R~~YD~~~~ 70 (104)
....|||+||||+++|+.++||+|||++++++|||+++. .++|++|++||++|+||.+|..||.++.
T Consensus 18 ~~~~~~y~~lg~~~~a~~~~i~~ay~~l~~~~hpd~~~~~~~~~~~f~~i~~ay~~L~~~~~r~~yd~~~~ 88 (780)
T 3apo_A 18 RHDQNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKYDKYGE 88 (780)
T ss_dssp -----CHHHHTCCTTCCHHHHHHHHCC-----------------------CTHHHHHHSHHHHHHHTTC--
T ss_pred CCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHHcChHHHHHHHhhcc
Confidence 446799999999999999999999999999999998753 6799999999999999999999999886
No 34
>2guz_B Mitochondrial import inner membrane translocase subunit TIM16; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}
Probab=99.28 E-value=3.7e-12 Score=74.35 Aligned_cols=53 Identities=15% Similarity=0.130 Sum_probs=48.7
Q ss_pred cCcccccccCCC---CCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHcCCh
Q 040915 7 GSLYEVLRVEPT---TMISEIKMAYQSLAKVYHLDLSGNGRDFIEIHKTYEMLSDP 59 (104)
Q Consensus 7 ~d~Y~iLgv~~~---a~~~~Ik~ayr~l~~~~hPD~~~~~~~f~~i~~Ay~~L~d~ 59 (104)
..-|.||||++. ++.++|+++||+|...+|||+.+.......|++|.++|...
T Consensus 4 ~EA~~ILgv~~~~~~a~~~~Ik~~yr~Lm~~nhPDkGGS~yl~~ki~~Ake~l~~~ 59 (65)
T 2guz_B 4 DESCKILNIEESKGDLNMDKINNRFNYLFEVNDKEKGGSFYLQSKVYRAAERLKWE 59 (65)
T ss_dssp HHHHHHTTCCGGGTCCSHHHHHHHHHHHHHHTCGGGTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCCcCcCCHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 355889999999 99999999999999999999999999999999999998643
No 35
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.25 E-value=5.2e-12 Score=92.40 Aligned_cols=62 Identities=35% Similarity=0.514 Sum_probs=52.7
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc-------HHHHHHHHHHHHHcCChhHHHHHhh
Q 040915 6 RGSLYEVLRVEPTTMISEIKMAYQSLAKVYHLDLSGN-------GRDFIEIHKTYEMLSDPTARVVYDM 67 (104)
Q Consensus 6 ~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~-------~~~f~~i~~Ay~~L~d~~~R~~YD~ 67 (104)
..++|.+||+.+.++.++|+++|+++++++|||+.+. .+.|+.|.+||++|+||.+|..||.
T Consensus 381 ~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r~~yd~ 449 (450)
T 2y4t_A 381 KRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMRKKFDD 449 (450)
T ss_dssp SCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC-----
T ss_pred chhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHHHhccC
Confidence 3589999999999999999999999999999998764 4589999999999999999999996
No 36
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=94.31 E-value=0.036 Score=43.68 Aligned_cols=48 Identities=15% Similarity=0.163 Sum_probs=37.4
Q ss_pred CCccCcccccccCCCCCH--HHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHH
Q 040915 4 GTRGSLYEVLRVEPTTMI--SEIKMAYQSLAKVYHLDLSGNGRDFIEIHKTYEM 55 (104)
Q Consensus 4 ~~~~d~Y~iLgv~~~a~~--~~Ik~ayr~l~~~~hPD~~~~~~~f~~i~~Ay~~ 55 (104)
....+||.|||++.+... ..|+++||++++..+++ .+++..|..|..|
T Consensus 626 ~~~~~~~~~lG~~~~~~~lr~~~~~ayr~la~~~~~~----~~r~~lvd~a~~v 675 (681)
T 2pzi_A 626 DNKASTNHILGFPFTSHGLRLGVEASLRSLARVAPTQ----RHRYTLVDMANKV 675 (681)
T ss_dssp SCCCSSSEETTEESSHHHHHHHHHHHHHHHHHHCSSH----HHHHHHHHHHHHH
T ss_pred ccCCCCcccCCCCCChHHHHHHHHHHHHHHHHhCCCh----HHHHHHHHHhccc
Confidence 345679999999766544 66999999999976655 4788888888765
No 37
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=62.00 E-value=18 Score=19.94 Aligned_cols=49 Identities=20% Similarity=0.331 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHhCCCCCcc-HHHHHHH---HHHHHHcCC-hh-HHHHHhhhcc
Q 040915 22 SEIKMAYQSLAKVYHLDLSGN-GRDFIEI---HKTYEMLSD-PT-ARVVYDMSLV 70 (104)
Q Consensus 22 ~~Ik~ayr~l~~~~hPD~~~~-~~~f~~i---~~Ay~~L~d-~~-~R~~YD~~~~ 70 (104)
++..++|.+|.+...-+..-. ++.+..| ..-|.+|.| |. +++.|+.+..
T Consensus 3 eEae~aF~~lL~~~~V~s~wsweqamr~i~i~DPrY~al~d~~~eRK~~Fe~Y~~ 57 (59)
T 2b7e_A 3 MEAEKEFITMLKENQVDSTWSFSRIISELGTRDPRYWMVDDDPLWKKEMFEKYLS 57 (59)
T ss_dssp THHHHHHHHHHHHTTCCSSCCHHHHHHHHHHHCTHHHHSCCCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCCCCCcHHHHHHHhccCCCccccccCCHHHHHHHHHHHHh
Confidence 467889999999887665444 5566666 348999997 65 7778887754
No 38
>4a3n_A Transcription factor SOX-17; 2.40A {Homo sapiens} SCOP: a.21.1.0
Probab=56.84 E-value=21 Score=19.21 Aligned_cols=40 Identities=13% Similarity=0.014 Sum_probs=29.4
Q ss_pred HHHHHHHHHHhCCCCCccHHHHHHHHHHHHHcCChhHHHHHh
Q 040915 25 KMAYQSLAKVYHLDLSGNGRDFIEIHKTYEMLSDPTARVVYD 66 (104)
Q Consensus 25 k~ayr~l~~~~hPD~~~~~~~f~~i~~Ay~~L~d~~~R~~YD 66 (104)
.+.++..++.-||+.. ..+..+.|.+.|..|++.++ ..|.
T Consensus 14 ~~~~r~~~~~~~p~~~-~~eisk~lg~~Wk~ls~~eK-~~y~ 53 (71)
T 4a3n_A 14 AKDERKRLAQQNPDLH-NAELSKMLGKSWKALTLAEK-RPFV 53 (71)
T ss_dssp HHHHHHHHHTTCTTSC-HHHHHHHHHHHHHHSCHHHH-HHHH
T ss_pred HHHHHHHHHHHCCCCC-HHHHHHHHHHHHhcCCHHHH-HHHH
Confidence 4566777788888854 46788889999999986554 4444
No 39
>2d7l_A WD repeat and HMG-box DNA binding protein 1; high mobility group box domain, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=56.23 E-value=16 Score=21.00 Aligned_cols=45 Identities=16% Similarity=0.008 Sum_probs=33.0
Q ss_pred HHHHHHHHHHhCCCCCccHHHHHHHHHHHHHcCChhHHHHHhhhcc
Q 040915 25 KMAYQSLAKVYHLDLSGNGRDFIEIHKTYEMLSDPTARVVYDMSLV 70 (104)
Q Consensus 25 k~ayr~l~~~~hPD~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~~~ 70 (104)
...+|..++.-||+.....+..+.|.+.|..|++.++ ..|.....
T Consensus 17 ~~e~R~~ik~~~P~~~~~~eisK~lge~Wk~ls~eeK-~~y~~~A~ 61 (81)
T 2d7l_A 17 LEENRSNILSDNPDFSDEADIIKEGMIRFRVLSTEER-KVWANKAK 61 (81)
T ss_dssp HHHHHHHHHHHCTTCCSHHHHHHHHHHHHSSSCHHHH-HHHHHHTT
T ss_pred HHHHHHHHHHHCCCCchhHHHHHHHHHHHHcCCHHHH-HHHHHHHH
Confidence 4567778888999975357888999999999996555 44544333
No 40
>1qqr_A Streptokinase domain B; non-proteolytic, plasminogen activation, fibrinolysis, hydrolase activator; 2.30A {Streptococcus dysgalactiae subsp} SCOP: d.15.5.1 PDB: 1c4p_A
Probab=54.96 E-value=7.1 Score=25.21 Aligned_cols=29 Identities=21% Similarity=0.176 Sum_probs=25.9
Q ss_pred ccccccCCCCCHHHHHHHHHHHHHHhCCC
Q 040915 10 YEVLRVEPTTMISEIKMAYQSLAKVYHLD 38 (104)
Q Consensus 10 Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD 38 (104)
+..|.|....+.++|+++-..+..++||+
T Consensus 35 l~~k~ig~~Its~eL~~~AqeiL~q~hp~ 63 (138)
T 1qqr_A 35 LKTLAIGDTITSQELLAQAQSILNKNHPG 63 (138)
T ss_dssp EEEECTTCEEEHHHHHHHHHHHHHHHSTT
T ss_pred hcccccCcccCHHHHHHHHHHHHHhcCCC
Confidence 56677778889999999999999999999
No 41
>1uzc_A Hypothetical protein FLJ21157; nuclear protein, structure, transcription, phosphopeptide recognition, RNA polymerase II carboxyl- terminal domain; NMR {Homo sapiens} SCOP: a.159.2.1 PDB: 2kzg_A 2lks_A 2l9v_A
Probab=47.34 E-value=37 Score=19.13 Aligned_cols=53 Identities=17% Similarity=0.209 Sum_probs=35.4
Q ss_pred CCCHHHHHHHHHHHHHHhCCCCCcc-HHHHHHHHH--HHHHcCC-hhHHHHHhhhcc
Q 040915 18 TTMISEIKMAYQSLAKVYHLDLSGN-GRDFIEIHK--TYEMLSD-PTARVVYDMSLV 70 (104)
Q Consensus 18 ~a~~~~Ik~ayr~l~~~~hPD~~~~-~~~f~~i~~--Ay~~L~d-~~~R~~YD~~~~ 70 (104)
.++.++.+.+|+.|...++-+.... ......|.. -|.+|.+ ..+++.|+.+..
T Consensus 11 ~~t~eea~~~F~~LL~e~~V~~~~tWe~~~~~i~~DpRY~al~~~~eRk~~F~ey~~ 67 (71)
T 1uzc_A 11 WNTKEEAKQAFKELLKEKRVPSNASWEQAMKMIINDPRYSALAKLSEKKQAFNAYKV 67 (71)
T ss_dssp CCSHHHHHHHHHHHHHHTTCCTTCCHHHHHHHHHTSGGGGGCSSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHcCcCCCCCHHHHHHHHccCccccccCCHHHHHHHHHHHHH
Confidence 4689999999999999987665444 333333322 5666766 456677776654
No 42
>2eqz_A High mobility group protein B3; HMG-box domain, mobility group protein 2A, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=46.72 E-value=38 Score=19.19 Aligned_cols=41 Identities=5% Similarity=-0.088 Sum_probs=29.7
Q ss_pred HHHHHHHHHHhCCCCCc-cHHHHHHHHHHHHHcCChhHHHHH
Q 040915 25 KMAYQSLAKVYHLDLSG-NGRDFIEIHKTYEMLSDPTARVVY 65 (104)
Q Consensus 25 k~ayr~l~~~~hPD~~~-~~~~f~~i~~Ay~~L~d~~~R~~Y 65 (104)
.+..|..++.-||+... ..+..+.|.+.|..|++.++....
T Consensus 27 ~~~~r~~~k~~~p~~~~~~~eisk~lg~~Wk~ls~~eK~~y~ 68 (86)
T 2eqz_A 27 VQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFD 68 (86)
T ss_dssp HHHHHHHHHHHCTTSCCCHHHHHHHHHHHHHSSCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCCcHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 45566667778998653 478889999999999866544433
No 43
>3f27_D Transcription factor SOX-17; protein-DNA complex, HMG domain, endodermal, activator, DNA- nucleus, transcription regulation, transcrip complex; HET: DNA; 2.75A {Mus musculus} SCOP: a.21.1.1 PDB: 2yul_A
Probab=46.01 E-value=38 Score=18.89 Aligned_cols=40 Identities=15% Similarity=0.043 Sum_probs=29.4
Q ss_pred HHHHHHHHHHhCCCCCccHHHHHHHHHHHHHcCChhHHHHH
Q 040915 25 KMAYQSLAKVYHLDLSGNGRDFIEIHKTYEMLSDPTARVVY 65 (104)
Q Consensus 25 k~ayr~l~~~~hPD~~~~~~~f~~i~~Ay~~L~d~~~R~~Y 65 (104)
...+|..++.-||+.. ..+..+.|.+.|..|++.++....
T Consensus 18 ~~~~r~~~~~~~p~~~-~~eisk~lg~~Wk~ls~~eK~~y~ 57 (83)
T 3f27_D 18 AKDERKRLAQQNPDLH-NAELSKMLGKSWKALTLAEKRPFV 57 (83)
T ss_dssp HHHHHHHHHHHCSSSC-HHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCC-HHHHHHHHHHHHhcCCHHHHHHHH
Confidence 5566777888899854 467888899999999865544433
No 44
>1ckt_A High mobility group 1 protein; high-mobility group domain, BENT DNA, protein-drug-DNA compl regulation-DNA complex; HET: DNA 5IU; 2.50A {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1j3x_A
Probab=45.13 E-value=36 Score=18.33 Aligned_cols=41 Identities=15% Similarity=-0.001 Sum_probs=29.4
Q ss_pred HHHHHHHHHhCCCCCc-cHHHHHHHHHHHHHcCChhHHHHHh
Q 040915 26 MAYQSLAKVYHLDLSG-NGRDFIEIHKTYEMLSDPTARVVYD 66 (104)
Q Consensus 26 ~ayr~l~~~~hPD~~~-~~~~f~~i~~Ay~~L~d~~~R~~YD 66 (104)
+..|..++.-||+... ..+..+.|.+.|..|++.++....+
T Consensus 14 ~~~r~~~~~~~p~~~~~~~eisk~lg~~Wk~ls~~eK~~y~~ 55 (71)
T 1ckt_A 14 QTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFED 55 (71)
T ss_dssp HHHHHHHHHHCTTCCCCHHHHHHHHHHHHHTCCTTTSHHHHH
T ss_pred HHHHHHHHHHCCCCCCcHHHHHHHHHHHHhhCCHHHHHHHHH
Confidence 3455566778998653 4788899999999999776544433
No 45
>1i11_A Transcription factor SOX-5; HMG BOX, DNA bending, DNA recognition, chromatin, DNA binding protein, DNA sequence specific, testis determining.; NMR {Mus musculus} SCOP: a.21.1.1
Probab=43.58 E-value=42 Score=18.68 Aligned_cols=42 Identities=7% Similarity=0.022 Sum_probs=30.4
Q ss_pred HHHHHHHHHHhCCCCCccHHHHHHHHHHHHHcCChhHHHHHhh
Q 040915 25 KMAYQSLAKVYHLDLSGNGRDFIEIHKTYEMLSDPTARVVYDM 67 (104)
Q Consensus 25 k~ayr~l~~~~hPD~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~ 67 (104)
.+.++..++.-||+.. ..+..+.|.+.|..|++.++...++.
T Consensus 16 ~~~~r~~~~~~~p~~~-~~eisk~lg~~Wk~ls~eeK~~y~~~ 57 (81)
T 1i11_A 16 AKDERRKILQAFPDMH-NSNISKILGSRWKAMTNLEKQPYYEE 57 (81)
T ss_dssp HHHHHHHHHTTCSSCC-HHHHHHHHHHHHTTSCSGGGHHHHHH
T ss_pred HHHHHHHHHHHCCCCC-HHHHHHHHHhhhhhCCHHHHHHHHHH
Confidence 4556666777788754 46788899999999997766555554
No 46
>1wgf_A Upstream binding factor 1; transcription factor, DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.21.1.1
Probab=43.38 E-value=45 Score=19.07 Aligned_cols=42 Identities=7% Similarity=-0.047 Sum_probs=29.7
Q ss_pred HHHHHHHHHHhCCCCCccHHHHHHHHHHHHHcCChhHHHHHhh
Q 040915 25 KMAYQSLAKVYHLDLSGNGRDFIEIHKTYEMLSDPTARVVYDM 67 (104)
Q Consensus 25 k~ayr~l~~~~hPD~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~ 67 (104)
.+..|..++.-||+. ...+..+.|.+.|..|++.++....+.
T Consensus 32 ~~~~r~~~k~~~P~~-~~~eisk~lg~~Wk~ls~eeK~~Y~~~ 73 (90)
T 1wgf_A 32 SEEKRRQLQEERPEL-SESELTRLLARMWNDLSEKKKAKYKAR 73 (90)
T ss_dssp HHHTHHHHHHHCTTS-CHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 455666777788883 356788899999999996554444443
No 47
>2yrq_A High mobility group protein B1; HMG box domain, DNA binding, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=40.63 E-value=61 Score=20.77 Aligned_cols=43 Identities=12% Similarity=-0.002 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHhCCCC-CccHHHHHHHHHHHHHcCChhHHHHHh
Q 040915 24 IKMAYQSLAKVYHLDL-SGNGRDFIEIHKTYEMLSDPTARVVYD 66 (104)
Q Consensus 24 Ik~ayr~l~~~~hPD~-~~~~~~f~~i~~Ay~~L~d~~~R~~YD 66 (104)
-.+..|..++.-||+. ....+..+.|.+.|..|++.++....+
T Consensus 26 F~~~~r~~~k~~~p~~~~~~~eisk~lg~~Wk~ls~~eK~~y~~ 69 (173)
T 2yrq_A 26 FVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFED 69 (173)
T ss_dssp HHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 3455677778889996 355788899999999999766544433
No 48
>2crj_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; structural DNA-binding protein BRAF35, DNA-bending; NMR {Mus musculus}
Probab=39.36 E-value=54 Score=18.78 Aligned_cols=41 Identities=12% Similarity=0.024 Sum_probs=30.1
Q ss_pred HHHHHHHHHHhCCCCCccHHHHHHHHHHHHHcCChhHHHHHh
Q 040915 25 KMAYQSLAKVYHLDLSGNGRDFIEIHKTYEMLSDPTARVVYD 66 (104)
Q Consensus 25 k~ayr~l~~~~hPD~~~~~~~f~~i~~Ay~~L~d~~~R~~YD 66 (104)
.+..|..++.-||+.. ..+..+.|.+.|..|++.++....+
T Consensus 19 ~~~~r~~~~~~~p~~~-~~eisk~lg~~Wk~ls~eeK~~Y~~ 59 (92)
T 2crj_A 19 LNERREQIRTRHPDLP-FPEITKMLGAEWSKLQPAEKQRYLD 59 (92)
T ss_dssp HHHHHHHHHHHCTTCC-HHHHHHHHHHHHHTCCTTHHHHHHH
T ss_pred HHHHHHHHHHHCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4556677777889854 5678889999999999776554444
No 49
>1wz6_A HMG-box transcription factor BBX; bobby SOX homolog, HMG_BOX domain, structural genomics, NPPSFA, riken structural genomics/proteomics initiative; NMR {Mus musculus}
Probab=37.92 E-value=53 Score=18.26 Aligned_cols=40 Identities=18% Similarity=0.116 Sum_probs=28.7
Q ss_pred HHHHHHHHHHhCCCCCccHHHHHHHHHHHHHcCChhHHHHHh
Q 040915 25 KMAYQSLAKVYHLDLSGNGRDFIEIHKTYEMLSDPTARVVYD 66 (104)
Q Consensus 25 k~ayr~l~~~~hPD~~~~~~~f~~i~~Ay~~L~d~~~R~~YD 66 (104)
.+.++..++.-||+.. ..+..+.|.+.|..|++.++ ..|.
T Consensus 19 ~~~~r~~~~~~~p~~~-~~eisk~lg~~Wk~ls~~eK-~~y~ 58 (82)
T 1wz6_A 19 CKRHRSLVRQEHPRLD-NRGATKILADWWAVLDPKEK-QKYT 58 (82)
T ss_dssp HHHHHHHHHHHCSSSC-TTHHHHHHHHHHHTCCHHHH-HHHH
T ss_pred HHHHHHHHHHHCCCCC-HHHHHHHHHHHHhhCCHHHH-HHHH
Confidence 4566777777888843 45778889999999986554 4444
No 50
>3nm9_A HMG-D, high mobility group protein D; DNA bending, non-sequence-specific, HMG chromosomal protein; HET: DNA; 2.85A {Drosophila melanogaster} SCOP: a.21.1.1 PDB: 1e7j_A* 1hma_A 1qrv_A*
Probab=37.17 E-value=51 Score=17.90 Aligned_cols=39 Identities=5% Similarity=-0.037 Sum_probs=29.5
Q ss_pred HHHHHHHHHHhCCCCCccHHHHHHHHHHHHHcCChhHHHHHhh
Q 040915 25 KMAYQSLAKVYHLDLSGNGRDFIEIHKTYEMLSDPTARVVYDM 67 (104)
Q Consensus 25 k~ayr~l~~~~hPD~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~ 67 (104)
.+.+|..++.-||+.. ..+..+.|.+.|..|++ |..|..
T Consensus 15 ~~~~r~~~~~~~p~~~-~~eisk~lg~~Wk~ls~---K~~y~~ 53 (73)
T 3nm9_A 15 LNSARESIKRENPGIK-VTEVAKRGGELWRAMKD---KSEWEA 53 (73)
T ss_dssp HHHHHHHHHHHSSSCC-HHHHHHHHHHHHHHCSC---CHHHHH
T ss_pred HHHHHHHHHHHCCCCC-HHHHHHHHHHHHHcCCc---hHHHHH
Confidence 4556677778889864 46788899999999987 666654
No 51
>2cs1_A PMS1 protein homolog 1; DNA mismatch repair protein PMS1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=36.29 E-value=61 Score=18.52 Aligned_cols=41 Identities=10% Similarity=0.012 Sum_probs=29.3
Q ss_pred HHHHHHHHHHhCCCCCccHHHHHHHHHHHHHcCChhHHHHHh
Q 040915 25 KMAYQSLAKVYHLDLSGNGRDFIEIHKTYEMLSDPTARVVYD 66 (104)
Q Consensus 25 k~ayr~l~~~~hPD~~~~~~~f~~i~~Ay~~L~d~~~R~~YD 66 (104)
.+..|..++.-||+.. ..+..+.|.+.|..|++.++....+
T Consensus 19 ~~~~r~~~~~~~p~~~-~~eisk~lg~~Wk~ls~eeK~~y~~ 59 (92)
T 2cs1_A 19 VQDHRPQFLIENPKTS-LEDATLQIEELWKTLSEEEKLKYEE 59 (92)
T ss_dssp HHHHHHHHHHHCCSSC-HHHHHHHHHHHHHSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 4556667778889853 4678889999999998665544443
No 52
>2cqn_A Formin-binding protein 3; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1
Probab=35.82 E-value=62 Score=18.41 Aligned_cols=51 Identities=10% Similarity=0.191 Sum_probs=35.5
Q ss_pred CCHHHHHHHHHHHHHHhCCCCCcc------HHHHHHHHHHHHHcCC-hhHHHHHhhhcc
Q 040915 19 TMISEIKMAYQSLAKVYHLDLSGN------GRDFIEIHKTYEMLSD-PTARVVYDMSLV 70 (104)
Q Consensus 19 a~~~~Ik~ayr~l~~~~hPD~~~~------~~~f~~i~~Ay~~L~d-~~~R~~YD~~~~ 70 (104)
.-...++.+|+.+.+...|..... ...|.. ..+|..+.+ ..++.+|+.++.
T Consensus 6 ~r~rrl~~~F~~mLk~~~p~I~~~s~We~vr~~~e~-~~~fkav~~E~eR~~lFeeYi~ 63 (77)
T 2cqn_A 6 SGMKRKESAFKSMLKQAAPPIELDAVWEDIRERFVK-EPAFEDITLESERKRIFKDFMH 63 (77)
T ss_dssp CSHHHHHHHHHHHHHTCSSCCCTTCCHHHHHHHHTT-SHHHHTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHcc-CHHHHhcCCHHHHHHHHHHHHH
Confidence 346778999999999887764433 223333 347888866 577888888776
No 53
>1hry_A Human SRY; DNA, DNA-binding protein, DNA binding protein/DNA complex; HET: DNA; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1hrz_A*
Probab=35.48 E-value=56 Score=17.79 Aligned_cols=40 Identities=8% Similarity=0.048 Sum_probs=28.1
Q ss_pred HHHHHHHHHHhCCCCCccHHHHHHHHHHHHHcCChhHHHHHh
Q 040915 25 KMAYQSLAKVYHLDLSGNGRDFIEIHKTYEMLSDPTARVVYD 66 (104)
Q Consensus 25 k~ayr~l~~~~hPD~~~~~~~f~~i~~Ay~~L~d~~~R~~YD 66 (104)
.+.+|..++.-||+.. ..+..+.|.+.|..|++.++ ..|-
T Consensus 16 ~~~~r~~~~~~~p~~~-~~eisk~lg~~Wk~ls~~eK-~~y~ 55 (76)
T 1hry_A 16 SRDQRRKMALENPRMR-NSEISKQLGYQWKMLTEAEK-WPFF 55 (76)
T ss_dssp HHHHHHHHHHHCSCCS-SSHHHHHHHHHHHTCCHHHH-HHHH
T ss_pred HHHHHHHHHHHCcCCC-HHHHHHHHHhHHHhCCHHHH-HHHH
Confidence 4556666777789853 45778899999999985544 4443
No 54
>1vq8_S 50S ribosomal protein L23P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.12.1.1 PDB: 1vq4_S* 1vq5_S* 1vq6_S* 1vq7_S* 1s72_S* 1vq9_S* 1vqk_S* 1vql_S* 1vqm_S* 1vqn_S* 1vqo_S* 1vqp_S* 1yhq_S* 1yi2_S* 1yij_S* 1yit_S* 1yj9_S* 1yjn_S* 1yjw_S* 2otj_S* ...
Probab=34.92 E-value=29 Score=20.38 Aligned_cols=21 Identities=14% Similarity=0.086 Sum_probs=18.2
Q ss_pred ccccCCCCCHHHHHHHHHHHH
Q 040915 12 VLRVEPTTMISEIKMAYQSLA 32 (104)
Q Consensus 12 iLgv~~~a~~~~Ik~ayr~l~ 32 (104)
+|-|.+.|+..+||+|..++-
T Consensus 26 ~F~V~~~AnK~qIK~ave~lf 46 (85)
T 1vq8_S 26 QFAVDDRASKGEVADAVEEQY 46 (85)
T ss_dssp EEEECTTCCHHHHHHHHHHHH
T ss_pred EEEECCCCCHHHHHHHHHHHh
Confidence 678999999999999988763
No 55
>1gt0_D Transcription factor SOX-2; POU factors, SOX proteins; 2.6A {Mus musculus} SCOP: a.21.1.1 PDB: 2le4_A 1o4x_B
Probab=34.80 E-value=54 Score=18.08 Aligned_cols=41 Identities=12% Similarity=0.115 Sum_probs=28.2
Q ss_pred HHHHHHHHHHhCCCCCccHHHHHHHHHHHHHcCChhHHHHHh
Q 040915 25 KMAYQSLAKVYHLDLSGNGRDFIEIHKTYEMLSDPTARVVYD 66 (104)
Q Consensus 25 k~ayr~l~~~~hPD~~~~~~~f~~i~~Ay~~L~d~~~R~~YD 66 (104)
.+..+..++.-||+.. ..+..+.|.+.|..|++.++....+
T Consensus 14 ~~~~r~~~~~~~p~~~-~~eisk~lg~~Wk~ls~eeK~~y~~ 54 (80)
T 1gt0_D 14 SRGQRRKMAQENPKMH-NSEISKRLGAEWKLLSETEKRPFID 54 (80)
T ss_dssp HHHHHHHHHTTSTTSC-HHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCC-HHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 3455666677788843 4678889999999998655444433
No 56
>2lef_A LEF-1 HMG, protein (lymphoid enhancer-binding factor); LEF1, HMG, TCR-A, transcription factor; HET: DNA; NMR {Mus musculus} SCOP: a.21.1.1
Probab=34.33 E-value=64 Score=18.12 Aligned_cols=40 Identities=8% Similarity=-0.071 Sum_probs=28.3
Q ss_pred HHHHHHHHHHhCCCCCccHHHHHHHHHHHHHcCChhHHHHHh
Q 040915 25 KMAYQSLAKVYHLDLSGNGRDFIEIHKTYEMLSDPTARVVYD 66 (104)
Q Consensus 25 k~ayr~l~~~~hPD~~~~~~~f~~i~~Ay~~L~d~~~R~~YD 66 (104)
.+..+..++.-||+. ...+..+.|.+.|..|++.+ +..|.
T Consensus 14 ~~~~r~~~~~~~P~~-~~~eisk~lg~~Wk~ls~ee-K~~y~ 53 (86)
T 2lef_A 14 MKEMRANVVAESTLK-ESAAINQILGRRWHALSREE-QAKYY 53 (86)
T ss_dssp HHHHHHHHHHHSSCC-CHHHHHHHHHHHHTTSCHHH-HHHHH
T ss_pred HHHHHHHHHHHCCCC-CHHHHHHHHHHHHhcCCHHH-HHHHH
Confidence 445566677778885 34678889999999998654 44444
No 57
>1hme_A High mobility group protein fragment-B; DNA-binding; NMR {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1hmf_A 1nhm_A 1nhn_A 1hsm_A 1hsn_A 1j3c_A 1j3d_A 2yqi_A
Probab=33.86 E-value=60 Score=17.70 Aligned_cols=40 Identities=13% Similarity=0.040 Sum_probs=28.4
Q ss_pred HHHHHHHHHHhCCCCCccHHHHHHHHHHHHHcCChhHHHHH
Q 040915 25 KMAYQSLAKVYHLDLSGNGRDFIEIHKTYEMLSDPTARVVY 65 (104)
Q Consensus 25 k~ayr~l~~~~hPD~~~~~~~f~~i~~Ay~~L~d~~~R~~Y 65 (104)
.+..|..++.-||+. ...+..+.|.+.|..|++.++....
T Consensus 18 ~~~~r~~~~~~~p~~-~~~eisk~lg~~Wk~ls~~eK~~y~ 57 (77)
T 1hme_A 18 CSEYRPKIKGEHPGL-SIGDVAKKLGEMWNNTAADDKQPYE 57 (77)
T ss_dssp HHHHHHHHHHHCTTC-CHHHHHHHHHHHHHHSCGGGSHHHH
T ss_pred HHHHHHHHHHHCCCC-CHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 445566667778884 3467888999999999966554433
No 58
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=33.84 E-value=35 Score=19.26 Aligned_cols=21 Identities=14% Similarity=0.107 Sum_probs=17.9
Q ss_pred ccccCCCCCHHHHHHHHHHHH
Q 040915 12 VLRVEPTTMISEIKMAYQSLA 32 (104)
Q Consensus 12 iLgv~~~a~~~~Ik~ayr~l~ 32 (104)
|=||+++++.++|++.|.+..
T Consensus 6 v~nLp~~~te~~l~~~F~~~G 26 (91)
T 2lxi_A 6 LRMLPQAATEDDIRGQLQSHG 26 (91)
T ss_dssp EETCCSSCCHHHHHHHHHHHT
T ss_pred EeCCCCCCCHHHHHHHHHHhC
Confidence 348999999999999998764
No 59
>2e6o_A HMG box-containing protein 1; HMG-box domain, HMG-box transcription factor 1, high mobility group box transcription factor 1, structural genomics; NMR {Homo sapiens}
Probab=33.33 E-value=68 Score=18.12 Aligned_cols=41 Identities=7% Similarity=0.059 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHcCChhHHHHHh
Q 040915 24 IKMAYQSLAKVYHLDLSGNGRDFIEIHKTYEMLSDPTARVVYD 66 (104)
Q Consensus 24 Ik~ayr~l~~~~hPD~~~~~~~f~~i~~Ay~~L~d~~~R~~YD 66 (104)
-.+.+|..++.-||+. ...+..+.|.+.|..|++.++ ..|.
T Consensus 28 f~~~~r~~~~~~~P~~-~~~eisk~lg~~Wk~ls~eeK-~~y~ 68 (87)
T 2e6o_A 28 FAKKYRVEYTQMYPGK-DNRAISVILGDRWKKMKNEER-RMYT 68 (87)
T ss_dssp HHHHTHHHHHHHCTTS-CHHHHHHHHHHHHHHSCHHHH-HHHH
T ss_pred HHHHHHHHHHHHCCCC-CHHHHHHHHHHHHhhCCHHHH-HHHH
Confidence 3455677777788884 346778889999999986554 4443
No 60
>3tmm_A Transcription factor A, mitochondrial; HMG, high mobility group, transcription, LSP1, mitochon transcription-DNA complex; HET: DNA; 2.50A {Homo sapiens}
Probab=33.25 E-value=79 Score=21.62 Aligned_cols=41 Identities=15% Similarity=0.157 Sum_probs=29.2
Q ss_pred HHHHHHHHHHhCCCCCccHHHHHHHHHHHHHcCChhHHHHHh
Q 040915 25 KMAYQSLAKVYHLDLSGNGRDFIEIHKTYEMLSDPTARVVYD 66 (104)
Q Consensus 25 k~ayr~l~~~~hPD~~~~~~~f~~i~~Ay~~L~d~~~R~~YD 66 (104)
.+..|...+.-||+.. ..+..+.|.+.|..|++.++....+
T Consensus 53 ~~e~r~~~k~~~P~~~-~~eisk~lge~Wk~Ls~~EK~~y~~ 93 (238)
T 3tmm_A 53 SKEQLPIFKAQNPDAK-TTELIRRIAQRWRELPDSKKKIYQD 93 (238)
T ss_dssp HHHHHHHHHHHSTTSC-HHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCC-HHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 4455666777889865 5677888899999999765544433
No 61
>3r8s_T 50S ribosomal protein L23; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_T 3j19_T 2wwq_T 3oat_T* 3oas_T* 3ofd_T 3ofc_T 3ofr_T* 3ofz_T* 3og0_T 3ofq_T 3r8t_T 2j28_T 3e1b_M 3e1d_M 3iy9_T 3i1n_T 1p85_R 1p86_R 1vs8_T ...
Probab=33.21 E-value=31 Score=20.56 Aligned_cols=20 Identities=45% Similarity=0.502 Sum_probs=16.3
Q ss_pred ccccCCCCCHHHHHHHHHHH
Q 040915 12 VLRVEPTTMISEIKMAYQSL 31 (104)
Q Consensus 12 iLgv~~~a~~~~Ik~ayr~l 31 (104)
+|-|.+.|+..+||+|..++
T Consensus 31 ~F~V~~~AnK~eIK~AVE~l 50 (93)
T 3r8s_T 31 VLKVAKDATKAEIKAAVQKL 50 (93)
T ss_dssp EEEECSSCCHHHHHHHHHHH
T ss_pred EEEECCCCCHHHHHHHHHHH
Confidence 46788899999999888765
No 62
>2zjr_Q 50S ribosomal protein L23; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.12.1.1 PDB: 1sm1_R* 2aar_R 2d3o_R 2zjp_Q* 2zjq_Q 1nkw_R 3cf5_Q* 3dll_Q* 3pio_Q* 3pip_Q* 1nwy_R* 1nwx_R* 1xbp_R* 1pnu_R 1pny_R 1vor_U 1vou_U 1vow_U 1voy_U 1vp0_U
Probab=33.12 E-value=31 Score=20.67 Aligned_cols=21 Identities=33% Similarity=0.303 Sum_probs=18.1
Q ss_pred ccccCCCCCHHHHHHHHHHHH
Q 040915 12 VLRVEPTTMISEIKMAYQSLA 32 (104)
Q Consensus 12 iLgv~~~a~~~~Ik~ayr~l~ 32 (104)
+|-|.+.|+..+||+|..++-
T Consensus 26 ~F~V~~~anK~eIK~aVE~lf 46 (95)
T 2zjr_Q 26 SFWVSPKATKTEIKDAIQQAF 46 (95)
T ss_dssp EEEECSSCTHHHHHHHHHHHH
T ss_pred EEEEcCCCCHHHHHHHHHHHh
Confidence 688999999999999988763
No 63
>3tq6_A Transcription factor A, mitochondrial; transcription, transcription regulation, mitochondrion; HET: DNA BRU 1PE; 2.45A {Homo sapiens}
Probab=32.42 E-value=87 Score=21.02 Aligned_cols=41 Identities=15% Similarity=0.157 Sum_probs=29.4
Q ss_pred HHHHHHHHHHhCCCCCccHHHHHHHHHHHHHcCChhHHHHHh
Q 040915 25 KMAYQSLAKVYHLDLSGNGRDFIEIHKTYEMLSDPTARVVYD 66 (104)
Q Consensus 25 k~ayr~l~~~~hPD~~~~~~~f~~i~~Ay~~L~d~~~R~~YD 66 (104)
.+..|..++.-||+.. ..+..+.|.+.|..|++.++....+
T Consensus 21 ~~~~r~~~k~~~P~~~-~~eisk~lge~Wk~Ls~~EK~~y~~ 61 (214)
T 3tq6_A 21 SKEQLPIFKAQNPDAK-TTELIRRIAQRWRELPDSKKKIYQD 61 (214)
T ss_dssp HHHHHHHHHHHCTTSC-HHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCC-HHHHHHHHHHHHHccCHHhhhHHHH
Confidence 4556667778899865 5677888899999998765544433
No 64
>2co9_A Thymus high mobility group box protein TOX; TOX protein, HMG box domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=32.09 E-value=71 Score=18.69 Aligned_cols=41 Identities=12% Similarity=0.011 Sum_probs=28.5
Q ss_pred HHHHHHHHHHhCCCCCccHHHHHHHHHHHHHcCChhHHHHHh
Q 040915 25 KMAYQSLAKVYHLDLSGNGRDFIEIHKTYEMLSDPTARVVYD 66 (104)
Q Consensus 25 k~ayr~l~~~~hPD~~~~~~~f~~i~~Ay~~L~d~~~R~~YD 66 (104)
.+.+|..++.-||+.. ..+.-+.|.+.|..|++.++....+
T Consensus 29 ~~~~r~~i~~~~P~~~-~~eisk~lg~~Wk~ls~eeK~~Y~~ 69 (102)
T 2co9_A 29 FRDTQAAIKGQNPNAT-FGEVSKIVASMWDGLGEEQKQVYKK 69 (102)
T ss_dssp HHHHHHHHHHHCTTSC-HHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCC-HHHHHHHHHHHHccCCHHHHHHHHH
Confidence 4455666777788853 4677888999999998665444433
No 65
>1cf7_A Protein (transcription factor E2F-4); E2F, winged-helix, DNA-binding domain, cell cycle, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: a.4.5.17
Probab=31.48 E-value=74 Score=18.03 Aligned_cols=44 Identities=16% Similarity=0.264 Sum_probs=30.5
Q ss_pred CCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHcCChhHHHHHhhh
Q 040915 18 TTMISEIKMAYQSLAKVYHLDLSGNGRDFIEIHKTYEMLSDPTARVVYDMS 68 (104)
Q Consensus 18 ~a~~~~Ik~ayr~l~~~~hPD~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~ 68 (104)
+.+...+.+.|-++.... |+.. ..|++|-+.|.=..+|+.||-.
T Consensus 9 ~~SL~~lt~kFi~l~~~~-~~~~------i~l~~aa~~L~v~~kRRiYDI~ 52 (76)
T 1cf7_A 9 EKSLGLLTTKFVSLLQEA-KDGV------LDLKLAADTLAVRQKRRIYDIT 52 (76)
T ss_dssp TTCHHHHHHHHHHHHHHS-STTE------EEHHHHHHHTTTCCTHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHhC-CCCc------CcHHHHHHHhCCccceehhhHH
Confidence 457778888888877653 3321 2277888888754799999953
No 66
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=30.92 E-value=29 Score=20.89 Aligned_cols=21 Identities=14% Similarity=0.385 Sum_probs=17.5
Q ss_pred CCCHHHHHHHHHHHHHHhCCC
Q 040915 18 TTMISEIKMAYQSLAKVYHLD 38 (104)
Q Consensus 18 ~a~~~~Ik~ayr~l~~~~hPD 38 (104)
+-++++|+.+|+.|++.+|-.
T Consensus 67 Nks~nqV~~RFq~Lm~Lf~~~ 87 (95)
T 1ug2_A 67 NKTPVEVSHRFRELMQLFHTA 87 (95)
T ss_dssp SCCHHHHHHHHHHHHHHHHHC
T ss_pred cCCHHHHHHHHHHHHHHHHHH
Confidence 457899999999999988754
No 67
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=30.57 E-value=37 Score=19.94 Aligned_cols=20 Identities=20% Similarity=0.283 Sum_probs=17.2
Q ss_pred ccccCCCCCHHHHHHHHHHH
Q 040915 12 VLRVEPTTMISEIKMAYQSL 31 (104)
Q Consensus 12 iLgv~~~a~~~~Ik~ayr~l 31 (104)
+|-|.+.|+..+||+|..++
T Consensus 27 ~F~Vd~~AnK~qIK~AVe~l 46 (86)
T 3j21_T 27 TFIVDRRATKQDIKRAVEEI 46 (86)
T ss_dssp EEEECTTCCHHHHHHHHHHH
T ss_pred EEEEcCCCCHHHHHHHHHHH
Confidence 47788999999999998876
No 68
>3tve_T 50S ribosomal protein L23; RNA, ribosome, tRNA, translation, mRNA; 3.10A {Thermus thermophilus} PDB: 3pyr_T 3pyo_T 3pyv_T 3pyt_T 3tvh_T 1n88_A 1vsa_R 1vsp_R 2hgj_W 2hgq_W 2hgu_W 2j01_X 2j03_X 2jl6_X 2jl8_X 2v47_X 2v49_X 2wdi_X 2wdj_X 2wdl_X ...
Probab=30.35 E-value=37 Score=20.16 Aligned_cols=20 Identities=30% Similarity=0.388 Sum_probs=17.5
Q ss_pred ccccCCCCCHHHHHHHHHHH
Q 040915 12 VLRVEPTTMISEIKMAYQSL 31 (104)
Q Consensus 12 iLgv~~~a~~~~Ik~ayr~l 31 (104)
+|-|.+.|+..+||+|..++
T Consensus 25 ~F~V~~~AnK~qIK~aVe~l 44 (92)
T 3tve_T 25 TFWVHPKATKTEIKNAVETA 44 (92)
T ss_dssp EEEECTTCCHHHHHHHHHHH
T ss_pred EEEECCCCCHHHHHHHHHHH
Confidence 57899999999999998865
No 69
>1aab_A High mobility group protein; HMG-BOX, DNA-binding; NMR {Rattus norvegicus} SCOP: a.21.1.1
Probab=29.90 E-value=35 Score=19.10 Aligned_cols=42 Identities=14% Similarity=0.004 Sum_probs=29.3
Q ss_pred HHHHHHHHHHhCCCCC-ccHHHHHHHHHHHHHcCChhHHHHHh
Q 040915 25 KMAYQSLAKVYHLDLS-GNGRDFIEIHKTYEMLSDPTARVVYD 66 (104)
Q Consensus 25 k~ayr~l~~~~hPD~~-~~~~~f~~i~~Ay~~L~d~~~R~~YD 66 (104)
.+..|..++.-||+.. ...+..+.|.+.|..|++.++....+
T Consensus 19 ~~~~r~~~~~~~p~~~~~~~eisk~lg~~Wk~ls~~eK~~y~~ 61 (83)
T 1aab_A 19 VQTSREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFED 61 (83)
T ss_dssp HHHHHHHHTTSCTTTCCCSSSSHHHHHHHHTTSCTTHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCCcHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 4455666777788864 24567788999999999766544443
No 70
>1j46_A SRY, sex-determining region Y protein; MALE sex determining factor, SRY, sex-reversal mutation; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1j47_A
Probab=29.82 E-value=78 Score=17.73 Aligned_cols=40 Identities=8% Similarity=0.074 Sum_probs=28.0
Q ss_pred HHHHHHHHHHhCCCCCccHHHHHHHHHHHHHcCChhHHHHHh
Q 040915 25 KMAYQSLAKVYHLDLSGNGRDFIEIHKTYEMLSDPTARVVYD 66 (104)
Q Consensus 25 k~ayr~l~~~~hPD~~~~~~~f~~i~~Ay~~L~d~~~R~~YD 66 (104)
...++..++.-||+.. ..+..+.|.+.|..|++.+ |..|-
T Consensus 16 ~~~~r~~~~~~~P~~~-~~eisk~lg~~Wk~ls~ee-K~~y~ 55 (85)
T 1j46_A 16 SRDQRRKMALENPRMR-NSEISKQLGYQWKMLTEAE-KWPFF 55 (85)
T ss_dssp HHHHHHHHHHHSTTSC-HHHHHHHHHHHHTTSCHHH-HHHHH
T ss_pred HHHHHHHHHHHCCCCC-HHHHHHHHHHHHHHCCHHH-HHHHH
Confidence 4456666777788753 4677888999999998654 44443
No 71
>4euw_A Transcription factor SOX-9; protein-DNA complex, HMG domain, activator, DNA-binding, NUC transcription; HET: DNA; 2.77A {Homo sapiens}
Probab=26.11 E-value=1e+02 Score=18.15 Aligned_cols=42 Identities=14% Similarity=0.067 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHcCChhHHHHHh
Q 040915 24 IKMAYQSLAKVYHLDLSGNGRDFIEIHKTYEMLSDPTARVVYD 66 (104)
Q Consensus 24 Ik~ayr~l~~~~hPD~~~~~~~f~~i~~Ay~~L~d~~~R~~YD 66 (104)
-.+.+|..++.-||+.. ..+..+.|.+.|..|++.++....+
T Consensus 40 F~~~~r~~~k~~~P~~~-~~eisk~lg~~Wk~ls~eeK~~Y~~ 81 (106)
T 4euw_A 40 WAQAARRKLADQYPHLH-NAELSKTLGKLWRLLNESEKRPFVE 81 (106)
T ss_dssp HHHHHHHHHHHHCTTSC-HHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 45667777788888853 3578888999999998655444433
No 72
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=25.88 E-value=61 Score=16.96 Aligned_cols=20 Identities=20% Similarity=0.258 Sum_probs=16.5
Q ss_pred ccccCCCCCHHHHHHHHHHH
Q 040915 12 VLRVEPTTMISEIKMAYQSL 31 (104)
Q Consensus 12 iLgv~~~a~~~~Ik~ayr~l 31 (104)
|=+|+++++.++|+..|.+.
T Consensus 4 v~nLp~~~t~~~l~~~F~~~ 23 (75)
T 1iqt_A 4 VGGLSPDTPEEKIREYFGGF 23 (75)
T ss_dssp ESCCCSSCCHHHHHHHHHHH
T ss_pred EeCCCCCCCHHHHHHHHHhc
Confidence 34788999999999988775
No 73
>1k99_A Upstream binding factor 1; alpha-helix, L-shape, DNA binding protein; NMR {Homo sapiens} SCOP: a.21.1.1
Probab=24.52 E-value=1.1e+02 Score=17.76 Aligned_cols=42 Identities=14% Similarity=0.039 Sum_probs=30.6
Q ss_pred HHHHHHHHHHhCCCCCccHHHHHHHHHHHHHcCChhHHHHHhh
Q 040915 25 KMAYQSLAKVYHLDLSGNGRDFIEIHKTYEMLSDPTARVVYDM 67 (104)
Q Consensus 25 k~ayr~l~~~~hPD~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~ 67 (104)
.+..|..++.-+|+. ...+..+.|.+.|..|++.++....+.
T Consensus 22 ~~~~r~~ik~~~P~~-~~~eisk~lg~~Wk~ls~eeK~~Y~~~ 63 (99)
T 1k99_A 22 FMEKRAKYAKLHPEM-SNLDLTKILSKKYKELPEKKKMKYIQD 63 (99)
T ss_dssp HHHHHHHHHTTCTTS-CSHHHHHHHHHHHHHSCSTTHHHHHHH
T ss_pred HHHHHHHHHHHCCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 455566677778885 357888999999999998766554443
No 74
>3bbz_A P protein, phosphoprotein; molten globule, viral protein, replication; 2.10A {Mumps virus}
Probab=24.37 E-value=87 Score=16.49 Aligned_cols=26 Identities=8% Similarity=0.276 Sum_probs=20.3
Q ss_pred HHHHHHHHHHcCChhHHHHHhhhccc
Q 040915 46 FIEIHKTYEMLSDPTARVVYDMSLVS 71 (104)
Q Consensus 46 f~~i~~Ay~~L~d~~~R~~YD~~~~~ 71 (104)
....+-|-+.+++|..|+.|+..+.+
T Consensus 5 ltl~~l~kdCi~np~~r~~Fe~ki~~ 30 (49)
T 3bbz_A 5 VMITKMITDSVANPQMKQAFEQRLAK 30 (49)
T ss_dssp HHHHHHHHHHCCSHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34456677899999999999987763
No 75
>3u2b_C Transcription factor SOX-4; HMG domain, transcriptional regulation, transcription-DNA CO; HET: DNA; 2.40A {Mus musculus} SCOP: a.21.1.1
Probab=24.00 E-value=96 Score=16.85 Aligned_cols=40 Identities=13% Similarity=0.145 Sum_probs=28.4
Q ss_pred HHHHHHHHHHhCCCCCccHHHHHHHHHHHHHcCChhHHHHHh
Q 040915 25 KMAYQSLAKVYHLDLSGNGRDFIEIHKTYEMLSDPTARVVYD 66 (104)
Q Consensus 25 k~ayr~l~~~~hPD~~~~~~~f~~i~~Ay~~L~d~~~R~~YD 66 (104)
.+.++..++.-||+.. ..+..+.|.+.|..|++.+ |..|.
T Consensus 14 ~~~~r~~~~~~~p~~~-~~eisk~lg~~Wk~ls~~e-K~~y~ 53 (79)
T 3u2b_C 14 SQIERRKIMEQSPDMH-NAEISKRLGKRWKLLKDSD-KIPFI 53 (79)
T ss_dssp HHHHHHHHHTTSTTSC-HHHHHHHHHHHHHHSCHHH-HHHHH
T ss_pred HHHHHHHHHHHCcCCC-HHHHHHHHHHHHHhCCHHH-HHHHH
Confidence 4556667777788753 4578888999999998554 44444
No 76
>1r4v_A Hypothetical protein AQ_328; structural genomics, all-alpha, histon fold, PSI, protein ST initiative, midwest center for structural genomics; HET: MSE; 1.90A {Aquifex aeolicus} SCOP: a.22.1.4
Probab=22.85 E-value=1.5e+02 Score=19.71 Aligned_cols=31 Identities=3% Similarity=-0.048 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHhCCCCCccHHHHHHHHHHHH
Q 040915 24 IKMAYQSLAKVYHLDLSGNGRDFIEIHKTYE 54 (104)
Q Consensus 24 Ik~ayr~l~~~~hPD~~~~~~~f~~i~~Ay~ 54 (104)
|--++-+..+..||++++..+....+.+-.+
T Consensus 138 L~valARv~K~l~Pernp~~ehwE~a~~v~D 168 (171)
T 1r4v_A 138 LLLMHADVIKKATGERKPSREAMEFVAQIVD 168 (171)
T ss_dssp HHHHHHHHHHHHCCCSSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Confidence 4456778889999998888776665554443
No 77
>2gzk_A Sex-determining region on Y / HMGB1; protein-DNA complex, HMG BOX, amphoterin, DNA/structural protein complex; NMR {Homo sapiens} SCOP: a.21.1.1 a.21.1.1
Probab=22.77 E-value=1.5e+02 Score=18.51 Aligned_cols=38 Identities=8% Similarity=0.080 Sum_probs=26.9
Q ss_pred HHHHHHHhCCCCCccHHHHHHHHHHHHHcCChhHHHHHh
Q 040915 28 YQSLAKVYHLDLSGNGRDFIEIHKTYEMLSDPTARVVYD 66 (104)
Q Consensus 28 yr~l~~~~hPD~~~~~~~f~~i~~Ay~~L~d~~~R~~YD 66 (104)
.+..++.-||+ ....+..+.|.+.|..|++.++....+
T Consensus 19 ~~~ki~~~~P~-~~~~eisk~lg~~Wk~ls~~eK~~y~~ 56 (159)
T 2gzk_A 19 QRRKMALENPR-MRNSEISKQLGYQWKMLTEAEKWPFFQ 56 (159)
T ss_dssp HHHHHHHHCSS-CCHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHHCCC-CCHHHHHHHHHHHHHHhhHHHhccHHH
Confidence 44455677898 345678889999999998766544444
No 78
>2xpn_B SPT6, chromatin structure modulator; transcription, elongation, histone chaperone, RNA polymerase mRNA export; 1.95A {Encephalitozoon cuniculi} PDB: 2xpo_B
Probab=20.62 E-value=23 Score=16.00 Aligned_cols=9 Identities=11% Similarity=0.501 Sum_probs=6.9
Q ss_pred cccccccCC
Q 040915 9 LYEVLRVEP 17 (104)
Q Consensus 9 ~Y~iLgv~~ 17 (104)
+|+|+|...
T Consensus 5 FyEIFGtG~ 13 (26)
T 2xpn_B 5 FFEIFGTGE 13 (26)
T ss_pred EEEEecCCc
Confidence 788888764
Done!