BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040920
(163 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q40392|TMVRN_NICGU TMV resistance protein N OS=Nicotiana glutinosa GN=N PE=1 SV=1
Length = 1144
Score = 157 bits (396), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 77/142 (54%), Positives = 99/142 (69%), Gaps = 1/142 (0%)
Query: 16 YDVFLSFRGKDVRHNFISHLNAALCRKKIETFIDDK-LNRGNEISPSLSSAIEGSKISIV 74
YDVFLSFRG+D R F SHL L K I+TF DDK L G I L AIE S+ +IV
Sbjct: 12 YDVFLSFRGEDTRKTFTSHLYEVLNDKGIKTFQDDKRLEYGATIPGELCKAIEESQFAIV 71
Query: 75 IFSKGYASSRLCLNELVKILESKNKYGQIVVPVFYLVDPSDVRNQTGTFGDSFSKLEERF 134
+FS+ YA+SR CLNELVKI+E K ++ Q V+P+FY VDPS VRNQ +F +F + E ++
Sbjct: 72 VFSENYATSRWCLNELVKIMECKTRFKQTVIPIFYDVDPSHVRNQKESFAKAFEEHETKY 131
Query: 135 KEKIDMLQTWRIAMREAANLSG 156
K+ ++ +Q WRIA+ EAANL G
Sbjct: 132 KDDVEGIQRWRIALNEAANLKG 153
>sp|O82500|Y4117_ARATH Putative disease resistance protein At4g11170 OS=Arabidopsis
thaliana GN=At4g11170 PE=2 SV=1
Length = 1095
Score = 138 bits (348), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 78/156 (50%), Positives = 102/156 (65%), Gaps = 7/156 (4%)
Query: 1 MASSSSSINMIPHIKYDVFLSFRGKDVRHNFISHLNAALCRKKIETFIDDKLNRGNEISP 60
MASSSS+ +YDVF SFRG+DVR+NF+SHL K I TF DD + R + I
Sbjct: 1 MASSSSN-----SWRYDVFPSFRGEDVRNNFLSHLLKEFESKGIVTFRDDHIKRSHTIGH 55
Query: 61 SLSSAIEGSKISIVIFSKGYASSRLCLNELVKILESKNKYGQIVVPVFYLVDPSDVRNQT 120
L +AI SKIS+V+FS+ YASS CL+EL++I++ K + G V+PVFY VDPSD+R QT
Sbjct: 56 ELRAAIRESKISVVLFSENYASSSWCLDELIEIMKCKEEQGLKVMPVFYKVDPSDIRKQT 115
Query: 121 GTFGDSFSKLEERFKEKIDMLQTWRIAMREAANLSG 156
G FG SF LE + + WR A+ +AAN+ G
Sbjct: 116 GKFGMSF--LETCCGKTEERQHNWRRALTDAANILG 149
>sp|O23530|SNC1_ARATH Protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1 OS=Arabidopsis
thaliana GN=SNC1 PE=1 SV=3
Length = 1301
Score = 134 bits (338), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 74/145 (51%), Positives = 97/145 (66%), Gaps = 5/145 (3%)
Query: 15 KYDVFLSFRGKDVRHNFISHLNAALCRKKIETFIDDKLNRGNEISPSLSSAIEGSKISIV 74
+YDVF SFRG+DVR +F+SHL L R K TFIDD++ R I P L SAI+ S+I+IV
Sbjct: 11 RYDVFPSFRGEDVRDSFLSHLLKEL-RGKAITFIDDEIERSRSIGPELLSAIKESRIAIV 69
Query: 75 IFSKGYASSRLCLNELVKILESKNKYGQIVVPVFYLVDPSDVRNQTGTFGDSFSKLEERF 134
IFSK YASS CLNELV+I + Q+V+P+F+ VD S+V+ QTG FG F EE
Sbjct: 70 IFSKNYASSTWCLNELVEIHKCYTNLNQMVIPIFFHVDASEVKKQTGEFGKVF---EETC 126
Query: 135 KEKI-DMLQTWRIAMREAANLSGFD 158
K K D Q+W+ A+ A ++G+D
Sbjct: 127 KAKSEDEKQSWKQALAAVAVMAGYD 151
>sp|Q9C5Q9|P2A05_ARATH Protein PHLOEM PROTEIN 2-LIKE A5 OS=Arabidopsis thaliana GN=PP2A5
PE=2 SV=1
Length = 411
Score = 109 bits (272), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 57/137 (41%), Positives = 86/137 (62%), Gaps = 1/137 (0%)
Query: 18 VFLSFRGKDVRHNFISHLNAALCRKKIETFIDDKLNRGNEISPSLSSAIEGSKISIVIFS 77
VF++FRGKD+R F+S L AL ++KI FID++ RG + SL I SKI++VIFS
Sbjct: 24 VFINFRGKDLRKGFMSFLKPALKKEKINVFIDEQEERGKYLI-SLFDTIGESKIALVIFS 82
Query: 78 KGYASSRLCLNELVKILESKNKYGQIVVPVFYLVDPSDVRNQTGTFGDSFSKLEERFKEK 137
+GY S C++ELVKI E ++ I++P+FY +D V++ TG FGD+F L ++++ +
Sbjct: 83 EGYCESHWCMDELVKIKEYMDQNRLIIIPIFYRLDLDVVKDLTGKFGDNFWDLVDKYQPE 142
Query: 138 IDMLQTWRIAMREAANL 154
L W A+ L
Sbjct: 143 PKKLHKWTEALFSVCEL 159
>sp|Q9FHE8|P2A06_ARATH Protein PHLOEM PROTEIN 2-LIKE A6 OS=Arabidopsis thaliana GN=PP2A6
PE=2 SV=1
Length = 392
Score = 108 bits (271), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 64/148 (43%), Positives = 89/148 (60%), Gaps = 2/148 (1%)
Query: 1 MASSSSSINMIPHIKYDVFLSFRGKDVRHNFISHLNAALCRKKIETFIDDKLNRGNEISP 60
MASSSS + P VF+ FRG DVR +FIS L AL I FID+ G+E++
Sbjct: 1 MASSSSVVKPTP-TGPQVFICFRGADVRKHFISFLVPALREANINVFIDENEFLGSEMA- 58
Query: 61 SLSSAIEGSKISIVIFSKGYASSRLCLNELVKILESKNKYGQIVVPVFYLVDPSDVRNQT 120
+L + IE S++++VIFS + S CLNEL KI E K++ IV+P+FY V PS V+
Sbjct: 59 NLLTRIEESELALVIFSVDFTRSHRCLNELAKIKERKDQGRLIVIPIFYKVKPSAVKFLE 118
Query: 121 GTFGDSFSKLEERFKEKIDMLQTWRIAM 148
G FGD+F LE + + + Q W+ A+
Sbjct: 119 GKFGDNFRALERNNRHMLPITQKWKEAL 146
>sp|Q9FHE9|P2A08_ARATH Protein PHLOEM PROTEIN 2-LIKE A8 OS=Arabidopsis thaliana GN=PP2A8
PE=2 SV=1
Length = 354
Score = 105 bits (261), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 58/155 (37%), Positives = 89/155 (57%), Gaps = 2/155 (1%)
Query: 3 SSSSSINMIPHIKYDVFLSFRGKDVRHNFISHLNAALCRKKIETFIDDKLNRGNEISPSL 62
++SSS+ P VF++FRGKD+R+ F+S L A+ I FID G ++ +L
Sbjct: 2 AASSSVRPTP-TGPQVFINFRGKDLRNGFLSFLEPAMREANINVFIDKDEVVGTDLV-NL 59
Query: 63 SSAIEGSKISIVIFSKGYASSRLCLNELVKILESKNKYGQIVVPVFYLVDPSDVRNQTGT 122
I+ S++++VIFSK Y SS CL+EL +I + N+ G +P+FY + PS V G
Sbjct: 60 FVRIQESRVAVVIFSKDYTSSEWCLDELAEIKDCINQGGLNAIPIFYKLAPSSVLELKGG 119
Query: 123 FGDSFSKLEERFKEKIDMLQTWRIAMREAANLSGF 157
FGD+F L+E++K + Q W+ A+ L G
Sbjct: 120 FGDTFRVLKEKYKNDPERTQKWQEALESIPKLKGL 154
>sp|Q9SYC9|VAP14_ARATH Vesicle-associated protein 1-4 OS=Arabidopsis thaliana GN=PVA14
PE=2 SV=1
Length = 571
Score = 94.7 bits (234), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 51/147 (34%), Positives = 88/147 (59%), Gaps = 1/147 (0%)
Query: 2 ASSSSSINMIPHIKYDVFLSFRGKDVRHNFISHLNAALCRKKIETFIDDKLNRGNEISPS 61
A+SS+ + I +Y VF++FRG ++R++F+ L A+ +KI F D+ RG ++
Sbjct: 344 AASSTDDHGITLPQYQVFINFRGDELRNSFVGFLVKAMRLEKINVFTDEVELRGTNLN-Y 402
Query: 62 LSSAIEGSKISIVIFSKGYASSRLCLNELVKILESKNKYGQIVVPVFYLVDPSDVRNQTG 121
L IE S++++ IFS+ Y S CL+ELVK+ E + +VVPVFY ++ + + G
Sbjct: 403 LFRRIEESRVAVAIFSERYTESCWCLDELVKMKEQMEQGKLVVVPVFYRLNATACKRFMG 462
Query: 122 TFGDSFSKLEERFKEKIDMLQTWRIAM 148
FGD+ LE ++ + + +Q W+ A+
Sbjct: 463 AFGDNLRNLEWEYRSEPERIQKWKEAL 489
>sp|Q9SZ67|WRK19_ARATH Probable WRKY transcription factor 19 OS=Arabidopsis thaliana
GN=WRKY19 PE=2 SV=1
Length = 1895
Score = 57.0 bits (136), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 42/144 (29%), Positives = 71/144 (49%), Gaps = 27/144 (18%)
Query: 16 YDVFLSFRGKDV-RHNFISHLNAALCRKKIETFIDDKLNRGNEISPSLSSAIEGSKISIV 74
YDV + + D+ +FISHL A+LCR+ I + + NE+ A+ ++ I+
Sbjct: 668 YDVVIRYGRADISNEDFISHLRASLCRRGISVY-----EKFNEV-----DALPKCRVLII 717
Query: 75 IFSKGYASSRLCLNELVKILESKNKYGQIVVPVFYLVDPSD-VRNQTGTFGDSFSKLEER 133
+ + Y S L+ ILE ++ ++V P+FY + P D V N SK ER
Sbjct: 718 VLTSTYVPSN-----LLNILEHQHTEDRVVYPIFYRLSPYDFVCN---------SKNYER 763
Query: 134 FKEKIDMLQTWRIAMREAANLSGF 157
F + D + W+ A++E + G+
Sbjct: 764 FYLQ-DEPKKWQAALKEITQMPGY 786
>sp|Q9FL92|WRK16_ARATH Probable WRKY transcription factor 16 OS=Arabidopsis thaliana
GN=WRKY16 PE=2 SV=1
Length = 1372
Score = 53.1 bits (126), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 62/116 (53%), Gaps = 8/116 (6%)
Query: 25 KDVRHNFISHLNAALCRKKI-ETFIDDKLNRGNEISPSLSSAIEGSKISIVIFSKGYASS 83
++VR++F+SHL+ AL RK + + FID + NE S +E +++S++I S
Sbjct: 14 EEVRYSFVSHLSKALQRKGVNDVFIDSDDSLSNESQ----SMVERARVSVMILPGNRTVS 69
Query: 84 RLCLNELVKILESKNKYGQIVVPVFYLVDPSDVRNQTGTFGDSFSKLEERFKEKID 139
L++LVK+L+ + Q+VVPV Y V S+ + FS + KE D
Sbjct: 70 ---LDKLVKVLDCQKNKDQVVVPVLYGVRSSETEWLSALDSKGFSSVHHSRKECSD 122
>sp|Q9FHE5|P2A07_ARATH Uncharacterized protein PHLOEM PROTEIN 2-LIKE A7 OS=Arabidopsis
thaliana GN=PP2A7 PE=4 SV=1
Length = 332
Score = 43.9 bits (102), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 44/138 (31%), Positives = 67/138 (48%), Gaps = 22/138 (15%)
Query: 25 KDVRHNFISHLNAALCRKKIETFIDDKLNRGNEISPSLSSAIEGSKISIVIFSKGYASSR 84
+DV I+ L L K I FID++ RG + +L I+ SKIS+ IFS+ S+
Sbjct: 51 EDVSKGLINFLEPVLQNKNINVFIDEEEVRGKGLK-NLFKRIQDSKISLAIFSE----SK 105
Query: 85 LCLNELVKILESKNKYGQIVVPVFYLVDPSDVRNQTGTFGDSFSKLEERFKEKIDMLQTW 144
N+L+K ES ++ +P+FY VD TG D L+ K K D++ +
Sbjct: 106 CDFNDLLKNNESADE----AIPIFYKVD------ATGDLAD----LQNSVKCKKDLINS- 150
Query: 145 RIAMREAANLSGFDSHGI 162
A+ E + L S G+
Sbjct: 151 --AVEEMSKLLANISVGV 166
>sp|Q9FKN7|DAR4_ARATH Protein DA1-related 4 OS=Arabidopsis thaliana GN=DAR4 PE=1 SV=2
Length = 1613
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 53/108 (49%), Gaps = 5/108 (4%)
Query: 10 MIPHIKYDVFLSFR---GKDVRHNFISHLNAALCRKKIETFIDD-KLNRGNEISPSLSSA 65
+ P IK D S + V H+ +SHL+AAL R+ I F+D L S +
Sbjct: 8 VTPSIKADCSHSVNIICEETVLHSLVSHLSAALRREGISVFVDACGLQETKFFSIKQNQP 67
Query: 66 I-EGSKISIVIFSKGYASSRLCLNELVKILESKNKYGQIVVPVFYLVD 112
+ +G+++ +V+ S + +K+++ G +VVPVFY VD
Sbjct: 68 LTDGARVLVVVISDEVEFYDPWFPKFLKVIQGWQNNGHVVVPVFYGVD 115
>sp|Q9FH83|WRK52_ARATH Probable WRKY transcription factor 52 OS=Arabidopsis thaliana
GN=WRKY52 PE=2 SV=3
Length = 1288
Score = 34.7 bits (78), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 47/86 (54%), Gaps = 2/86 (2%)
Query: 25 KDVRHNFISHLNAALCRKKIETFIDDKLNRGNEISPSLSSAIEGSKISIVIFSKGYASSR 84
++VR++F+SHL+ AL R+K + ++ + + + IE + +S+++ S
Sbjct: 17 EEVRYSFVSHLSEAL-RRKGINNVVVDVDIDDLLFKESQAKIEKAGVSVMVLPGNCDPSE 75
Query: 85 LCLNELVKILE-SKNKYGQIVVPVFY 109
+ L++ K+LE +N Q VV V Y
Sbjct: 76 VWLDKFAKVLECQRNNKDQAVVSVLY 101
>sp|Q19317|NBEA_CAEEL Putative neurobeachin homolog OS=Caenorhabditis elegans GN=sel-2
PE=2 SV=3
Length = 2507
Score = 33.1 bits (74), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 30/58 (51%)
Query: 29 HNFISHLNAALCRKKIETFIDDKLNRGNEISPSLSSAIEGSKISIVIFSKGYASSRLC 86
H I+H + R I+ FID +L E+S ++SA + SI + + G A+S C
Sbjct: 400 HIAIAHCYSRWGRSDIKCFIDGQLAETIELSWVVTSATNWDRCSIGVSADGTANSAFC 457
>sp|Q77MT3|VG06B_GAHVM Uncharacterized gene 6b protein OS=Gallid herpesvirus 2 (strain
Chicken/Md5/ATCC VR-987) GN=MDV006 PE=4 SV=1
Length = 93
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Query: 106 PVFYL-VDPSDVRNQTGTFGDSFSKLEERFKEKIDMLQTWR 145
P F+L D + RN T +FGD ER + I TWR
Sbjct: 31 PTFHLETDTATTRNGTSSFGDRIRSFCERARSLISNFVTWR 71
>sp|Q9DGV6|VG06A_GAHVM Uncharacterized gene 6a protein OS=Gallid herpesvirus 2 (strain
Chicken/Md5/ATCC VR-987) GN=MDV006 PE=4 SV=1
Length = 85
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Query: 106 PVFYL-VDPSDVRNQTGTFGDSFSKLEERFKEKIDMLQTWR 145
P F+L D + RN T +FGD ER + I TWR
Sbjct: 23 PTFHLETDTATTRNGTSSFGDRIRSFCERARSLISNFVTWR 63
>sp|O13339|TERT_SCHPO Telomerase reverse transcriptase OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=trt1 PE=1 SV=1
Length = 988
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 52/99 (52%), Gaps = 13/99 (13%)
Query: 42 KKIETFIDDKLNRGNEISPS-LSSAIEGSKISIVIFSKGYASSRLCLNELVKILESKNK- 99
K +ETF+ KL+R S L S I+ S+I ++ K +++++CL++ K + +
Sbjct: 371 KDLETFL--KLSRYESFSLHYLMSNIKISEIEWLVLGKR-SNAKMCLSDFEKRKQIFAEF 427
Query: 100 ----YGQIVVPV----FYLVDPSDVRNQTGTFGDSFSKL 130
Y ++P+ FY+ + SD+RN+T F KL
Sbjct: 428 IYWLYNSFIIPILQSFFYITESSDLRNRTVYFRKDIWKL 466
>sp|P39336|YJGL_ECOLI Uncharacterized protein YjgL OS=Escherichia coli (strain K12)
GN=yjgL PE=4 SV=2
Length = 604
Score = 31.2 bits (69), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 19/27 (70%)
Query: 130 LEERFKEKIDMLQTWRIAMREAANLSG 156
L + FK+K ++L TWR+ M + A ++G
Sbjct: 15 LADNFKQKSEVLNTWRVGMNDFARIAG 41
>sp|Q8F9R5|HIS4_LEPIN 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]
imidazole-4-carboxamide isomerase OS=Leptospira
interrogans serogroup Icterohaemorrhagiae serovar Lai
(strain 56601) GN=hisA PE=3 SV=1
Length = 241
Score = 30.8 bits (68), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 42/91 (46%), Gaps = 7/91 (7%)
Query: 72 SIVIFSKGYASSRLCLNELVKILESKNKYGQIVVPVFYLVDPSDVRNQTGTFGDSFSKLE 131
++ +F Y ++ +E K+ ES K G + +LVD + RNQ G DS K+
Sbjct: 14 AVRLFKGNYEEKKIYSSEPWKLAESFAKNG---ATLLHLVDLNGARNQLGVNEDSILKIR 70
Query: 132 ERFKEKIDMLQTWRIAMREAANLSGFDSHGI 162
E K+ + +R+ L+ +D GI
Sbjct: 71 ETTSLKVQLGG----GIRDKEKLAYYDKIGI 97
>sp|P62354|HIS4_LEPIC 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]
imidazole-4-carboxamide isomerase OS=Leptospira
interrogans serogroup Icterohaemorrhagiae serovar
copenhageni (strain Fiocruz L1-130) GN=hisA PE=3 SV=1
Length = 241
Score = 30.8 bits (68), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 42/91 (46%), Gaps = 7/91 (7%)
Query: 72 SIVIFSKGYASSRLCLNELVKILESKNKYGQIVVPVFYLVDPSDVRNQTGTFGDSFSKLE 131
++ +F Y ++ +E K+ ES K G + +LVD + RNQ G DS K+
Sbjct: 14 AVRLFKGNYEEKKIYSSEPWKLAESFAKNG---ATLLHLVDLNGARNQLGVNEDSILKIR 70
Query: 132 ERFKEKIDMLQTWRIAMREAANLSGFDSHGI 162
E K+ + +R+ L+ +D GI
Sbjct: 71 ETTSLKVQLGG----GIRDKEKLAYYDKIGI 97
>sp|Q4FLQ7|GATA_PELUB Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Pelagibacter
ubique (strain HTCC1062) GN=gatA PE=3 SV=1
Length = 485
Score = 30.4 bits (67), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 24/104 (23%), Positives = 44/104 (42%), Gaps = 17/104 (16%)
Query: 56 NEISPSLSSAIEGSKISIV--------------IFSKGYASSRLCLNELVKILESKNKYG 101
NE S L++ I+G KI I +++KG ++ C E+V+I Y
Sbjct: 243 NEYSKELTNNIKGKKIGIPKEYRVDGMPKEIEDLWTKGIEYAKDCGAEIVEISLPHTNY- 301
Query: 102 QIVVPVFYLVDPSDVRNQTGTFGDSFSKLEERFKEKIDMLQTWR 145
+P +Y+V P++ + + + + IDM + R
Sbjct: 302 --ALPTYYIVAPAEASSNLARYDGVKYGFRSKGENLIDMYEKTR 343
>sp|C4Z4L9|MURC_EUBE2 UDP-N-acetylmuramate--L-alanine ligase OS=Eubacterium eligens
(strain ATCC 27750 / VPI C15-48) GN=murC PE=3 SV=1
Length = 459
Score = 30.0 bits (66), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 42/92 (45%), Gaps = 11/92 (11%)
Query: 46 TFIDDKLNRGNEISPSLSSAIE--GSKISIVIFSKGYASSRLCLNELVKILESKNKYGQI 103
T IDD + +EI +LSSA +++ +V Y+ ++L NE L +K +
Sbjct: 331 TVIDDYAHHPDEIRATLSSAAHYPHNRVWVVFQPHTYSRTKLLFNEFADALSHADK---V 387
Query: 104 VVPVFYLVDPSDVRNQTGTFGDSFSKLEERFK 135
V+ Y +T T G S + L E+ K
Sbjct: 388 VLAKIY------AARETDTLGISSADLCEKIK 413
>sp|Q7VMZ8|LPOA_HAEDU Penicillin-binding protein activator LpoA OS=Haemophilus ducreyi
(strain 35000HP / ATCC 700724) GN=lpoA PE=3 SV=1
Length = 583
Score = 29.6 bits (65), Expect = 8.0, Method: Composition-based stats.
Identities = 22/99 (22%), Positives = 49/99 (49%), Gaps = 1/99 (1%)
Query: 58 ISPSLSSAIEGSKISIVIFSKGYASSRLCLNELVKILESKNKYGQIVVPVFYLVDPSDVR 117
+S S+++ + ++ +I + YASS +N+ + L S++K ++ V L+D + V
Sbjct: 22 LSACNSTSLFENSVTYLIKQEAYASSEFYINKAEQTLNSQDKITYQLLAVRKLIDENKVV 81
Query: 118 NQTGTFGDSFSKLEERFKEKIDMLQTWRIAMREAANLSG 156
T D ++L + + L+ +++ + A L G
Sbjct: 82 EAQNTLNDLTTRLNIMEQNPLQQLE-YQLVTAQLAALKG 119
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.135 0.381
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 57,115,364
Number of Sequences: 539616
Number of extensions: 2176268
Number of successful extensions: 5560
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 5536
Number of HSP's gapped (non-prelim): 28
length of query: 163
length of database: 191,569,459
effective HSP length: 108
effective length of query: 55
effective length of database: 133,290,931
effective search space: 7331001205
effective search space used: 7331001205
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)