Query 040920
Match_columns 163
No_of_seqs 157 out of 1249
Neff 7.4
Searched_HMMs 29240
Date Mon Mar 25 21:21:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040920.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040920hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ozi_A L6TR; plant TIR domain, 100.0 5.4E-55 1.8E-59 340.5 11.0 151 10-162 30-182 (204)
2 3jrn_A AT1G72930 protein; TIR 100.0 1.3E-53 4.5E-58 326.9 10.4 147 12-160 5-152 (176)
3 3h16_A TIR protein; bacteria T 100.0 2.8E-37 9.5E-42 231.4 4.0 136 10-151 15-151 (154)
4 3ub2_A TOLL/interleukin-1 rece 100.0 3.1E-31 1.1E-35 197.4 -0.1 132 12-148 7-145 (146)
5 1fyx_A TOLL-like receptor 2; b 99.9 3.8E-27 1.3E-31 175.6 2.4 104 12-117 2-111 (149)
6 2js7_A Myeloid differentiation 99.9 1.8E-26 6.1E-31 174.0 5.8 100 12-113 13-117 (160)
7 2j67_A TOLL like receptor 10; 99.9 3.1E-26 1.1E-30 175.5 4.0 99 12-112 32-135 (178)
8 1t3g_A X-linked interleukin-1 99.9 1.4E-25 4.7E-30 169.0 6.5 101 14-114 1-115 (159)
9 3j0a_A TOLL-like receptor 5; m 99.8 1.5E-19 5.3E-24 164.2 6.2 101 12-114 667-775 (844)
10 1eiw_A Hypothetical protein MT 98.3 9.3E-07 3.2E-11 62.3 4.6 72 14-108 3-74 (111)
11 3hyn_A Putative signal transdu 97.0 0.0035 1.2E-07 47.6 8.6 111 15-130 5-139 (189)
12 2f62_A Nucleoside 2-deoxyribos 94.1 0.42 1.5E-05 35.1 9.2 86 12-97 7-98 (161)
13 2khz_A C-MYC-responsive protei 90.0 2.5 8.6E-05 30.7 9.1 78 15-96 11-102 (165)
14 3ehd_A Uncharacterized conserv 80.6 7.8 0.00027 28.3 7.5 66 30-96 20-96 (162)
15 4fyk_A Deoxyribonucleoside 5'- 78.2 14 0.00048 26.7 8.2 76 17-96 4-93 (152)
16 1s2d_A Purine trans deoxyribos 72.3 20 0.00067 26.1 7.8 78 16-96 8-108 (167)
17 2yvq_A Carbamoyl-phosphate syn 69.7 9.4 0.00032 27.0 5.4 62 18-81 27-107 (143)
18 2jug_A TUBC protein; docking d 60.7 6 0.00021 25.0 2.6 39 32-70 7-49 (78)
19 1byr_A Protein (endonuclease); 46.8 55 0.0019 22.2 6.1 11 31-41 15-25 (155)
20 3aon_B V-type sodium ATPase su 42.1 28 0.00097 23.7 3.8 49 38-92 16-64 (115)
21 1f8y_A Nucleoside 2-deoxyribos 39.6 75 0.0026 22.6 5.9 78 17-97 5-106 (157)
22 2d00_A V-type ATP synthase sub 35.8 86 0.0029 20.9 5.4 43 37-82 16-58 (109)
23 1sc3_B Interleukin-1 beta conv 34.9 9.6 0.00033 24.8 0.3 24 20-43 22-45 (88)
24 2ql9_B Caspase-7; cysteine pro 31.7 11 0.00037 24.8 0.2 30 14-43 9-47 (97)
25 4a6h_A Phosphatidylinositol 4, 31.3 28 0.00095 23.6 2.3 20 136-155 101-120 (120)
26 3czq_A Putative polyphosphate 31.2 70 0.0024 25.6 5.0 99 17-116 86-204 (304)
27 1qtn_B Caspase-8; apoptosis, d 30.9 11 0.00036 24.9 0.0 29 14-42 11-48 (95)
28 2dko_B Caspase-3; low barrier 28.4 13 0.00046 24.8 0.2 29 14-42 15-52 (103)
29 1wu7_A Histidyl-tRNA synthetas 28.0 1.1E+02 0.0038 25.0 5.9 60 15-78 332-391 (434)
30 1pyo_B Caspase-2; apoptosis, c 27.6 14 0.00048 24.7 0.2 28 15-42 14-50 (105)
31 3hjn_A DTMP kinase, thymidylat 27.4 62 0.0021 23.5 3.8 31 19-49 2-34 (197)
32 1v95_A Nuclear receptor coacti 27.3 1E+02 0.0035 21.5 4.8 49 29-78 21-69 (130)
33 1v5p_A Pleckstrin homology dom 27.3 38 0.0013 23.0 2.5 20 136-155 103-122 (126)
34 4h3d_A 3-dehydroquinate dehydr 27.0 77 0.0026 24.4 4.5 66 35-101 104-169 (258)
35 3net_A Histidyl-tRNA synthetas 26.1 87 0.003 26.1 4.9 62 14-79 370-431 (465)
36 3lc0_A Histidyl-tRNA synthetas 26.1 1.4E+02 0.0048 24.9 6.2 61 14-78 360-420 (456)
37 3ro3_B Minsc, peptide of prote 25.8 51 0.0017 15.7 2.0 14 138-151 7-20 (22)
38 2yry_A Pleckstrin homology dom 25.7 43 0.0015 21.7 2.5 19 136-154 103-121 (122)
39 1bax_A M-PMV MA, M-PMV matrix 25.4 36 0.0012 22.6 1.9 18 29-46 9-26 (94)
40 1evl_A Threonyl-tRNA synthetas 24.8 97 0.0033 25.1 4.9 60 15-78 298-357 (401)
41 4g84_A Histidine--tRNA ligase, 24.4 1.3E+02 0.0046 24.6 5.8 62 14-78 365-426 (464)
42 2i4r_A V-type ATP synthase sub 24.3 52 0.0018 21.9 2.6 42 38-82 23-65 (102)
43 2cof_A Protein KIAA1914; PH do 23.5 52 0.0018 21.0 2.5 19 136-154 84-102 (107)
44 2d9v_A Pleckstrin homology dom 22.9 57 0.0019 21.8 2.7 22 136-157 97-118 (130)
45 4g85_A Histidine-tRNA ligase, 22.7 1.6E+02 0.0055 24.7 6.0 62 14-78 418-479 (517)
46 2coc_A FYVE, rhogef and PH dom 22.6 53 0.0018 21.9 2.4 18 136-153 89-106 (112)
47 2xzd_B Caspase-3; hydrolase-pr 22.5 21 0.00073 24.5 0.3 28 15-42 15-51 (118)
48 3sm9_A Mglur3, metabotropic gl 22.4 59 0.002 26.9 3.2 59 18-76 188-249 (479)
49 1upq_A PEPP1; PH domain, phosp 22.0 55 0.0019 21.2 2.4 23 136-158 92-114 (123)
50 1qe0_A Histidyl-tRNA synthetas 21.9 90 0.0031 25.3 4.1 61 14-78 328-388 (420)
51 2efe_B Small GTP-binding prote 21.8 1.9E+02 0.0064 19.4 7.5 61 54-117 69-130 (181)
52 4a8j_B Elongator complex prote 21.6 1.7E+02 0.0058 23.1 5.4 43 70-116 101-143 (270)
53 3n75_A LDC, lysine decarboxyla 21.5 1.8E+02 0.0062 25.9 6.3 69 30-113 17-85 (715)
54 3czp_A Putative polyphosphate 21.4 1.2E+02 0.0042 25.9 5.0 101 16-117 42-162 (500)
55 2i5f_A Pleckstrin; PH domain, 21.1 60 0.0021 20.4 2.4 17 136-152 92-108 (109)
56 2fg5_A RAB-22B, RAS-related pr 21.0 2.1E+02 0.0072 19.7 7.1 62 54-118 80-142 (192)
57 2wem_A Glutaredoxin-related pr 20.4 80 0.0027 21.1 3.0 29 56-86 7-35 (118)
No 1
>3ozi_A L6TR; plant TIR domain, plant protein; 2.30A {Linum usitatissimum}
Probab=100.00 E-value=5.4e-55 Score=340.46 Aligned_cols=151 Identities=43% Similarity=0.772 Sum_probs=140.8
Q ss_pred CCCCceeeEEEeccccccccchHHHHHHHHhcCCeeeeecCC-CCCCCcchHHHHHhhhhCceEEEEeecCCcCchhhHH
Q 040920 10 MIPHIKYDVFLSFRGKDVRHNFISHLNAALCRKKIETFIDDK-LNRGNEISPSLSSAIEGSKISIVIFSKGYASSRLCLN 88 (163)
Q Consensus 10 ~~~~~~ydVFISy~~~D~~~~fv~~L~~~L~~~gi~~f~D~~-~~~G~~i~~~i~~aI~~S~~~IvvlS~~y~~S~wC~~ 88 (163)
..+.++||||||||++|+|+.|++||+++|+++||++|+|++ +++|+.|.++|.+||++|+++|+|||+||++|+||++
T Consensus 30 ~~~~~~yDVFISfrg~D~r~~Fv~~L~~aL~~~GI~~f~D~~el~~G~~I~~~l~~aIe~Sri~IvV~S~nYa~S~WCl~ 109 (204)
T 3ozi_A 30 SFPSVEYEVFLSFRGPDTREQFTDFLYQSLRRYKIHTFRDDDELLKGKEIGPNLLRAIDQSKIYVPIISSGYADSKWCLM 109 (204)
T ss_dssp ----CCCCEEEEECHHHHTTTHHHHHHHHHHHTTCCEEEEETTTCCGGGTTTTHHHHHHHCSEEEEEECTTGGGCHHHHH
T ss_pred CCCCcCCeEEEeccccCCCHHHHHHHHHHHHHCCCcEEEeCCccCCCCchHHHHHHHHHhCcEeeEEEEcccccCcHHHH
Confidence 568899999999999999989999999999999999999977 9999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhh-cCceeEeEEEecCCcccccccCchHHHHHHHHHHhhhChHHHHHHHHHHHHhhcccCcccCCC
Q 040920 89 ELVKILESKNK-YGQIVVPVFYLVDPSDVRNQTGTFGDSFSKLEERFKEKIDMLQTWRIAMREAANLSGFDSHGI 162 (163)
Q Consensus 89 El~~~~~~~~~-~~~~viPVfy~v~p~~v~~q~~~f~~~f~~~~~~~~~~~e~~~~W~~aL~~v~~~~G~~~~~~ 162 (163)
||++|++|.++ ++++||||||+|+|++||+|+|.||++|.+|++++ +.+++++||.||++||+++||++.+.
T Consensus 110 EL~~I~e~~~~~~~~~ViPIFY~VdPs~Vr~q~g~fg~af~~~~~~~--~~~~v~~Wr~AL~~va~lsG~~~~~~ 182 (204)
T 3ozi_A 110 ELAEIVRRQEEDPRRIILPIFYMVDPSDVRHQTGCYKKAFRKHANKF--DGQTIQNWKDALKKVGDLKGWHIGKN 182 (204)
T ss_dssp HHHHHHHHHHHCTTSEECCEEESSCHHHHHHTCTTHHHHHHHHTTTS--CHHHHHHHHHHHHHHHTSCBEEECTT
T ss_pred HHHHHHHHHHhcCCeeeEEEEeecCHHHHHhccccHHHHHHHHHHhh--CHHHHHHHHHHHHHHhccCceecCCC
Confidence 99999999865 57899999999999999999999999999999887 47899999999999999999999764
No 2
>3jrn_A AT1G72930 protein; TIR domain arabidopsis thaliana, plant protein; 2.00A {Arabidopsis thaliana}
Probab=100.00 E-value=1.3e-53 Score=326.86 Aligned_cols=147 Identities=48% Similarity=0.752 Sum_probs=127.6
Q ss_pred CCceeeEEEeccccccccchHHHHHHHHhcCCeeeeecCC-CCCCCcchHHHHHhhhhCceEEEEeecCCcCchhhHHHH
Q 040920 12 PHIKYDVFLSFRGKDVRHNFISHLNAALCRKKIETFIDDK-LNRGNEISPSLSSAIEGSKISIVIFSKGYASSRLCLNEL 90 (163)
Q Consensus 12 ~~~~ydVFISy~~~D~~~~fv~~L~~~L~~~gi~~f~D~~-~~~G~~i~~~i~~aI~~S~~~IvvlS~~y~~S~wC~~El 90 (163)
.+++||||||||++|+|.+|++||+.+|+++||++|+|++ +.+|+.|.++|.+||++|+++|+|||+||++|+||++||
T Consensus 5 ~~~~yDVFiSfrg~D~r~~Fv~~L~~~L~~~gi~~f~D~~~l~~G~~i~~~l~~aIe~Sri~IvV~S~ny~~S~WCl~EL 84 (176)
T 3jrn_A 5 TATKYDVFLSFRGHDTRHNFISFLYKELVRRSIRTFKDDKELENGQRFSPELKSPIEVSRFAVVVVSENYAASSWCLDEL 84 (176)
T ss_dssp --CCEEEEEEECHHHHTTTHHHHHHHHHHHTTCCEECCCC--------------CCTTEEEEEEEECTTTTTCHHHHHHH
T ss_pred CCCCCeEEEECcCcccChHHHHHHHHHHHHCCCEEEEEcccccCCCchHHHHHHHHHhCCEEEEEecCCcCCChhHHHHH
Confidence 4578999999999999989999999999999999999977 999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhcCceeEeEEEecCCcccccccCchHHHHHHHHHHhhhChHHHHHHHHHHHHhhcccCcccC
Q 040920 91 VKILESKNKYGQIVVPVFYLVDPSDVRNQTGTFGDSFSKLEERFKEKIDMLQTWRIAMREAANLSGFDSH 160 (163)
Q Consensus 91 ~~~~~~~~~~~~~viPVfy~v~p~~v~~q~~~f~~~f~~~~~~~~~~~e~~~~W~~aL~~v~~~~G~~~~ 160 (163)
++|++|.++++++||||||+|+|++||+|+|.||++|.+|+++ .+.+++++||.||++|||++||++.
T Consensus 85 ~~i~~~~~~~~~~ViPIfy~V~ps~Vr~q~g~fg~af~~~~~~--~~~~~~~~Wr~AL~~va~~~G~~~~ 152 (176)
T 3jrn_A 85 VTIMDFEKKGSITVMPIFYGVEPNHVRWQTGVLAEQFKKHASR--EDPEKVLKWRQALTNFAQLSGDCSG 152 (176)
T ss_dssp HHHHHHHHTTSCEEEEEECSSCHHHHHHTCTHHHHHHHHHHTT--SCHHHHHHHHHHHHHHTTSCCEECC
T ss_pred HHHHhhhccCCCEEEEEEecCCHHHhhhccCcHHHHHHHHHhc--cCHHHHHHHHHHHHHHhcccceecC
Confidence 9999999889999999999999999999999999999999987 5689999999999999999999984
No 3
>3h16_A TIR protein; bacteria TIR domain, signaling protein; 2.50A {Paracoccus denitrificans PD1222}
Probab=100.00 E-value=2.8e-37 Score=231.37 Aligned_cols=136 Identities=18% Similarity=0.284 Sum_probs=117.6
Q ss_pred CCCCceeeEEEeccccccccchHHHHHHHHhcCCeeeeecCC-CCCCCcchHHHHHhhhhCceEEEEeecCCcCchhhHH
Q 040920 10 MIPHIKYDVFLSFRGKDVRHNFISHLNAALCRKKIETFIDDK-LNRGNEISPSLSSAIEGSKISIVIFSKGYASSRLCLN 88 (163)
Q Consensus 10 ~~~~~~ydVFISy~~~D~~~~fv~~L~~~L~~~gi~~f~D~~-~~~G~~i~~~i~~aI~~S~~~IvvlS~~y~~S~wC~~ 88 (163)
+++.++|||||||+++| +..|+.+|+.+|+++|+++|+|++ +.+|+.|.++|.++|++|+++|+|+|++|++|.||++
T Consensus 15 ~~~~~~~dvFISy~~~D-~~~~~~~L~~~L~~~gi~v~~D~~~l~~G~~~~~~i~~ai~~s~~~i~v~S~~y~~S~wc~~ 93 (154)
T 3h16_A 15 LTSAPPHDIFISHAWED-KADFVEALAHTLRAAGAEVWYDDFSLRPGDSLRRSIDKGLGSSRFGIVVLSTHFFKKEWPQK 93 (154)
T ss_dssp ---CCSEEEEEEEEGGG-TTTTHHHHHHHHHHHTCCEECGGGEECTTCCHHHHHHHHHTSEEEEEEEEEHHHHTTCCCHH
T ss_pred cCCCCCceEEEECcccC-hHHHHHHHHHHHHHCCCcEEEcHHhCCCccHHHHHHHHHHHhCcEEEEEeCcchhcChHHHH
Confidence 56789999999999999 568999999999999999999997 9999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhcCceeEeEEEecCCcccccccCchHHHHHHHHHHhhhChHHHHHHHHHHHHh
Q 040920 89 ELVKILESKNKYGQIVVPVFYLVDPSDVRNQTGTFGDSFSKLEERFKEKIDMLQTWRIAMREA 151 (163)
Q Consensus 89 El~~~~~~~~~~~~~viPVfy~v~p~~v~~q~~~f~~~f~~~~~~~~~~~e~~~~W~~aL~~v 151 (163)
||..++++...++++||||||+++|++|++|+|.|++.|.... ....+.++-..|.++
T Consensus 94 El~~~~~~~~~~~~~iiPV~~~v~p~~v~~~~~~~~~~~~~~~-----~~~~~~~ia~~l~~l 151 (154)
T 3h16_A 94 ELDGLFQLESSGRSRILPIWHKVSKDEVASFSPTMADKLAFNT-----STKSVDEIVADLMAI 151 (154)
T ss_dssp HHHHHTCCCTTSCCCEEEEEESCCTGGGTTTCCCCCSSCCEET-----TTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCEEEEEEecCCHHHHhhCCccHHHHHhhhc-----CcccHHHHHHHHHHH
Confidence 9999999877778899999999999999999999998775221 133455555555543
No 4
>3ub2_A TOLL/interleukin-1 receptor domain-containing ADA protein; TIR domain, TLRS adaptor, immune system; 2.40A {Homo sapiens} PDB: 3ub3_A 3ub4_A 2y92_A
Probab=99.96 E-value=3.1e-31 Score=197.41 Aligned_cols=132 Identities=14% Similarity=0.222 Sum_probs=93.0
Q ss_pred CCceeeEEEeccccccccchHHHHHHHHhc--CCeeeeecCC-CCCCCcchHHHHHhhhhCceEEEEeecCCcCchhhHH
Q 040920 12 PHIKYDVFLSFRGKDVRHNFISHLNAALCR--KKIETFIDDK-LNRGNEISPSLSSAIEGSKISIVIFSKGYASSRLCLN 88 (163)
Q Consensus 12 ~~~~ydVFISy~~~D~~~~fv~~L~~~L~~--~gi~~f~D~~-~~~G~~i~~~i~~aI~~S~~~IvvlS~~y~~S~wC~~ 88 (163)
.++.|||||||+++|+ .|+.+|..+|++ .|+++|+|++ +.+|+.+.++|.++|++|+++|+|+|++|++|.||+.
T Consensus 7 ~~k~YDvFISy~~~D~--~~v~~L~~~Le~~~~g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~I~VlS~~y~~S~wc~~ 84 (146)
T 3ub2_A 7 WSKDYDVCVCHSEEDL--VAAQDLVSYLEGSTASLRCFLQLRDATPGGAIVSELCQALSSSHCRVLLITPGFLQDPWCKY 84 (146)
T ss_dssp TSSSEEEEEECCGGGH--HHHHHHHHHHHC------------------CCCEEECCTTCCEEEEEEEECHHHHHCHHHHH
T ss_pred CCCcceEEEeCChhhH--HHHHHHHHHHhCcCCCeEEEEECccccccccHHHHHHHHHHhCCEEEEEECcccccCHHHHH
Confidence 5578999999999997 589999999998 6999999877 9999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhcCceeEeEEEecCCcccc----cccCchHHHHHHHHHHhhhChHHHHHHHHHH
Q 040920 89 ELVKILESKNKYGQIVVPVFYLVDPSDVR----NQTGTFGDSFSKLEERFKEKIDMLQTWRIAM 148 (163)
Q Consensus 89 El~~~~~~~~~~~~~viPVfy~v~p~~v~----~q~~~f~~~f~~~~~~~~~~~e~~~~W~~aL 148 (163)
|+..|+.+...+..+||||||+++++++. ........ .....|..-.+.|.+|+.||
T Consensus 85 El~~al~~~~~~~~~vIpv~~~v~~~~lp~~Lr~~~~id~~---~~d~~f~~l~~~v~~~~~~~ 145 (146)
T 3ub2_A 85 QMLQALTEAPGAEGCTIPLLSGLSRAAYPPELRFMYYVDGR---GPDGGFRQVKEAVMRYLQTL 145 (146)
T ss_dssp HHHHHHHTSSSSSSEEEEEECSCCGGGSCGGGGGSCCEETT---SGGGGHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhhcCCcEEEEEcCCChhhCCHHHhCeeeeecc---ChHhhHHHHHHHHHHHHHhc
Confidence 99999997633344788999998866554 33321111 12233333467889998876
No 5
>1fyx_A TOLL-like receptor 2; beta-alpha-beta fold, signaling protein; 2.80A {Homo sapiens} SCOP: c.23.2.1 PDB: 1fyw_A 1o77_A
Probab=99.93 E-value=3.8e-27 Score=175.61 Aligned_cols=104 Identities=15% Similarity=0.272 Sum_probs=92.1
Q ss_pred CCceeeEEEeccccccccchHHH-HHHHHhcC--CeeeeecCC-CCCCCcchHHHHHhhhhCceEEEEeecCCcCchhhH
Q 040920 12 PHIKYDVFLSFRGKDVRHNFISH-LNAALCRK--KIETFIDDK-LNRGNEISPSLSSAIEGSKISIVIFSKGYASSRLCL 87 (163)
Q Consensus 12 ~~~~ydVFISy~~~D~~~~fv~~-L~~~L~~~--gi~~f~D~~-~~~G~~i~~~i~~aI~~S~~~IvvlS~~y~~S~wC~ 87 (163)
.++.|||||||+++|. .|+.+ |..+|++. |+++|+|++ +.+|+.+.++|.++|++|+++|+|+||+|++|.||+
T Consensus 2 ~~~~yDvFiSy~~~D~--~~v~~~L~~~Le~~~~g~~~~~~~rd~~~G~~~~~~i~~~i~~Sr~~I~VlS~~y~~S~wc~ 79 (149)
T 1fyx_A 2 RNIXYDAFVSYSERDA--YWVENLMVQELENFNPPFKLXLHKRDFIHGKWIIDNIIDSIEKSHKTVFVLSENFVKSEWXK 79 (149)
T ss_dssp CSCCEEEEEECCGGGH--HHHHTHHHHHHTTSSSCCCEEEHHHHCCSSSCHHHHHHHHHHHEEEEEEEECHHHHHHHTHH
T ss_pred CCccceEEEECCcccH--HHHHHHHHHHHhcCCCCeEEeeccccCCCchhHHHHHHHHHHHcCEEEEEeCcchhccchHH
Confidence 4578999999999997 79986 99999986 999999887 999999999999999999999999999999999999
Q ss_pred HHHHHHHH-hhhhcCceeEeEEEe-cCCcccc
Q 040920 88 NELVKILE-SKNKYGQIVVPVFYL-VDPSDVR 117 (163)
Q Consensus 88 ~El~~~~~-~~~~~~~~viPVfy~-v~p~~v~ 117 (163)
.|+..|+. +.++++++||||||+ +.+..+.
T Consensus 80 ~El~~a~~~~~~~~~~~vIpv~~~~i~~~~~p 111 (149)
T 1fyx_A 80 YELDFSHFRLFDENNDAAILILLEPIEKKAIP 111 (149)
T ss_dssp HHSCCSCCTTCGGGTTCCEEEESSCCCTTTSC
T ss_pred HHHHHHHHHHHhcCCCEEEEEEecCCChhhcC
Confidence 99999985 445667899999995 4554444
No 6
>2js7_A Myeloid differentiation primary response protein MYD88; MYD88_human, TIR domain, TOLL like receptor adaptor domain, innate immune signaling; NMR {Homo sapiens} PDB: 2z5v_A
Probab=99.93 E-value=1.8e-26 Score=173.97 Aligned_cols=100 Identities=18% Similarity=0.312 Sum_probs=90.0
Q ss_pred CCceeeEEEeccccccccchHHHHHHHHhcC--CeeeeecCC-CCCCCcchHHHHHhhh-hCceEEEEeecCCcCchhhH
Q 040920 12 PHIKYDVFLSFRGKDVRHNFISHLNAALCRK--KIETFIDDK-LNRGNEISPSLSSAIE-GSKISIVIFSKGYASSRLCL 87 (163)
Q Consensus 12 ~~~~ydVFISy~~~D~~~~fv~~L~~~L~~~--gi~~f~D~~-~~~G~~i~~~i~~aI~-~S~~~IvvlS~~y~~S~wC~ 87 (163)
.++.|||||||+++|. .||.+|..+|+++ |+++|+|++ +.+|+.+.++|.++|+ +|+++|+|+|++|++|.||+
T Consensus 13 ~~~~yDvFISys~~D~--~fv~~L~~~Le~~~~g~~~~~~~rd~~~G~~i~~~i~~~I~~~Sr~~IvVlS~~y~~S~wc~ 90 (160)
T 2js7_A 13 MPERFDAFICYCPSDI--QFVQEMIRQLEQTNYRLKLCVSDRDVLPGTCVWSIASELIEKRCRRMVVVVSDDYLQSKECD 90 (160)
T ss_dssp CTTCEEEEEECCGGGH--HHHHHHHHHHHTSSSCCCCEESCCSSSSSCSCCCCCGGGHHHHEEEEEEECCHHHHHSHHHH
T ss_pred CCcceEEEEEcccccH--HHHHHHHHHHhcCCCceEEEEeCCCCCCCCcHHHHHHHHHHHhCCEEEEEECcchhcCHHHH
Confidence 4578999999999995 7999999999984 699999887 9999999999999999 79999999999999999999
Q ss_pred HHHHHHHHhh-hhcCceeEeEEEecCC
Q 040920 88 NELVKILESK-NKYGQIVVPVFYLVDP 113 (163)
Q Consensus 88 ~El~~~~~~~-~~~~~~viPVfy~v~p 113 (163)
.|+..|+++. ++++++||||||+.-+
T Consensus 91 ~El~~a~~~~~~~~~~~vIpV~~~~~~ 117 (160)
T 2js7_A 91 FQTKFALSLSPGAHQKRLIPIKYKAMK 117 (160)
T ss_dssp HHHHHHHHHCTTHHHHTEEEEESSCCC
T ss_pred HHHHHHHHHHHccCCCEEEEEEEcccc
Confidence 9999999875 4456799999997554
No 7
>2j67_A TOLL like receptor 10; TIR, IL-1, TLR10, membrane, innate immunity, immune response, leucine-rich repeat, glycoprotein, transmembrane; 2.20A {Homo sapiens} PDB: 1fyv_A
Probab=99.92 E-value=3.1e-26 Score=175.48 Aligned_cols=99 Identities=18% Similarity=0.312 Sum_probs=85.3
Q ss_pred CCceeeEEEeccccccccchHHH-HHHHHhc--CCeeeeecCC-CCCCCcchHHHHHhhhhCceEEEEeecCCcCchhhH
Q 040920 12 PHIKYDVFLSFRGKDVRHNFISH-LNAALCR--KKIETFIDDK-LNRGNEISPSLSSAIEGSKISIVIFSKGYASSRLCL 87 (163)
Q Consensus 12 ~~~~ydVFISy~~~D~~~~fv~~-L~~~L~~--~gi~~f~D~~-~~~G~~i~~~i~~aI~~S~~~IvvlS~~y~~S~wC~ 87 (163)
.++.|||||||+++|. .||.. |..+|++ +|+++|+|++ +.+|+.+.++|.++|++|+++|+|+||+|++|.||+
T Consensus 32 ~~~~yDvFISys~~D~--~fv~~~L~~~LE~~~~g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~IvVlS~~yl~S~wc~ 109 (178)
T 2j67_A 32 RNVRFHAFISYSEHDS--LWVKNELIPNLEKEDGSILICLYESYFDPGKSISENIVSFIEKSYKSIFVLSPNFVQNEWCH 109 (178)
T ss_dssp CSCCEEEEEECCGGGH--HHHHHTHHHHHTTCC-CCCEEEHHHHCCTTSCHHHHHHHHHHTEEEEEEEECHHHHHHTGGG
T ss_pred CCccceEEEECCCCCH--HHHHHHHHHHHhcccCCeEEEEecccCCCCccHHHHHHHHHHhCCEEEEEecccccccchHH
Confidence 6688999999999996 79975 9999998 8999999887 999999999999999999999999999999999999
Q ss_pred HHHHHHHHh-hhhcCceeEeEEEecC
Q 040920 88 NELVKILES-KNKYGQIVVPVFYLVD 112 (163)
Q Consensus 88 ~El~~~~~~-~~~~~~~viPVfy~v~ 112 (163)
.|+..|+.+ .++++++||||||+..
T Consensus 110 ~El~~a~~~~~~~~~~~vIpV~~~~i 135 (178)
T 2j67_A 110 YEFYFAHHNLFHENSDHIILILLEPI 135 (178)
T ss_dssp THHHHTTCC-------CEEEEESSCC
T ss_pred HHHHHHHHHHHhcCCCEEEEEEecCC
Confidence 999999864 4556789999999643
No 8
>1t3g_A X-linked interleukin-1 receptor accessory protein-like 1; TIR, IL-1RAPL, IL-1R, TLR, membrane protein; 2.30A {Homo sapiens}
Probab=99.92 E-value=1.4e-25 Score=168.99 Aligned_cols=101 Identities=19% Similarity=0.210 Sum_probs=88.8
Q ss_pred ceeeEEEecccccc---------ccchHHHHHH-HHh-cCCeeeeecCC-CCCCCcchHHHHHhhhhCceEEEEeecCCc
Q 040920 14 IKYDVFLSFRGKDV---------RHNFISHLNA-ALC-RKKIETFIDDK-LNRGNEISPSLSSAIEGSKISIVIFSKGYA 81 (163)
Q Consensus 14 ~~ydVFISy~~~D~---------~~~fv~~L~~-~L~-~~gi~~f~D~~-~~~G~~i~~~i~~aI~~S~~~IvvlS~~y~ 81 (163)
+.|||||||+++|. +..||.+|.. .|+ +.|+++|+|++ +.||+.+.++|.++|++|+.+|+|+|++|+
T Consensus 1 k~yDaFISy~~~D~~wv~~~~~~~~~fv~~ll~~~LE~~~g~~l~~~~rD~~~G~~i~~~i~~~I~~Sr~~IvVlS~~y~ 80 (159)
T 1t3g_A 1 KDYDAYLSYTKVDPDQWNQETGEEERFALEILPDMLEKHYGYKLFIPDRDLIPTGTYIEDVARCVDQSKRLIIVMTPNYV 80 (159)
T ss_dssp CCBSEEEECCCCC-------CCSHHHHHHTHHHHHHHHTSCCCEECHHHHCCCCTTHHHHHHHHHHTBSEEEEEECHHHH
T ss_pred CCceEEEeCccccchhhhccchhhHHHHHHHHHHHHcCCCCeEEEEEcccccCccchHHHHHHHHHHcCEEEEEEccchh
Confidence 46999999999996 3578888665 699 79999999887 999999999999999999999999999997
Q ss_pred -CchhhHHHHHHHHHhh-hhcCceeEeEEEecCCc
Q 040920 82 -SSRLCLNELVKILESK-NKYGQIVVPVFYLVDPS 114 (163)
Q Consensus 82 -~S~wC~~El~~~~~~~-~~~~~~viPVfy~v~p~ 114 (163)
.|.||..|+..|+.+. +++++.||||++...+.
T Consensus 81 ~~S~wc~~El~~a~~~~~~~~~~~vI~I~~~~~~~ 115 (159)
T 1t3g_A 81 VRRGWSIFELETRLRNMLVTGEIKVILIECSELRG 115 (159)
T ss_dssp HTTTTHHHHHSHHHHHHHHTTSSEEEEEECSCCCS
T ss_pred hcChHHHHHHHHHHHHHHhcCCCEEEEEEeccccc
Confidence 9999999999999875 56678999999875554
No 9
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.77 E-value=1.5e-19 Score=164.25 Aligned_cols=101 Identities=17% Similarity=0.290 Sum_probs=90.3
Q ss_pred CCceeeEEEeccccccccchH-HHHHHHHhc-----CCeeeeecCC-CCCCCcchHHHHHhhhhCceEEEEeecCCcCch
Q 040920 12 PHIKYDVFLSFRGKDVRHNFI-SHLNAALCR-----KKIETFIDDK-LNRGNEISPSLSSAIEGSKISIVIFSKGYASSR 84 (163)
Q Consensus 12 ~~~~ydVFISy~~~D~~~~fv-~~L~~~L~~-----~gi~~f~D~~-~~~G~~i~~~i~~aI~~S~~~IvvlS~~y~~S~ 84 (163)
..+.|||||||+++|. .|| ..|...|+. .|+++|++++ +.||+.+.++|.++|++|+++|+|+|++|+.|+
T Consensus 667 ~~~~yd~fisy~~~d~--~~v~~~l~~~Le~~~~~~~~~~~~~~~rd~~~G~~~~~~i~~~i~~sr~~i~vls~~~~~s~ 744 (844)
T 3j0a_A 667 DMYKYDAYLCFSSKDF--TWVQNALLKHLDTQYSDQNRFNLCFEERDFVPGENRIANIQDAIWNSRKIVCLVSRHFLRDG 744 (844)
T ss_dssp SCCCCSEEEECCSTTH--HHHHHTHHHHHHSTTTTTTCSCEECSSSSCCSSSCHHHHHHHHHHHSSEEEEEECTTHHHHT
T ss_pred cceeccEEEEeeCCcH--HHHHHHHHHHHhhccccCCceEEEEEccccCCCchHHHHHHHHHHHhCeEEEEeccccccCh
Confidence 5679999999999996 687 779999985 5899999887 999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHhh-hhcCceeEeEEEecCCc
Q 040920 85 LCLNELVKILESK-NKYGQIVVPVFYLVDPS 114 (163)
Q Consensus 85 wC~~El~~~~~~~-~~~~~~viPVfy~v~p~ 114 (163)
||..|+..|+.+. ++++++||||||+..|.
T Consensus 745 wc~~e~~~a~~~~~~~~~~~~i~i~~~~~~~ 775 (844)
T 3j0a_A 745 WCLEAFSYAQGRCLSDLNSALIMVVVGSLSQ 775 (844)
T ss_dssp STTHHHHHHHSCCCCSSCTTEEEEESSCCCS
T ss_pred HHHHHHHHHHHHHHHhcCCcEEEEEeccCCh
Confidence 9999999998754 56778999999975543
No 10
>1eiw_A Hypothetical protein MTH538; CHEY-like fold, flavodoxin-like fold, (A/B)5 doubly wound fold, parallel beta sheet; NMR {Methanothermobacterthermautotrophicus} SCOP: c.23.3.1
Probab=98.25 E-value=9.3e-07 Score=62.32 Aligned_cols=72 Identities=11% Similarity=0.021 Sum_probs=52.4
Q ss_pred ceeeEEEeccccccccchHHHHHHHHhcCCeeeeecCCCCCCCcchHHHHHhhhhCceEEEEeecCCcCchhhHHHHHHH
Q 040920 14 IKYDVFLSFRGKDVRHNFISHLNAALCRKKIETFIDDKLNRGNEISPSLSSAIEGSKISIVIFSKGYASSRLCLNELVKI 93 (163)
Q Consensus 14 ~~ydVFISy~~~D~~~~fv~~L~~~L~~~gi~~f~D~~~~~G~~i~~~i~~aI~~S~~~IvvlS~~y~~S~wC~~El~~~ 93 (163)
.+|.+||||+.+|. ...|...|.+.|+.. .| +.|+.|.++|++.++...+|+||..|+..+
T Consensus 3 ~~~~lFISh~~~d~----~~~L~~~l~~~~f~~-~~--------------~~I~~~~~vIvL~G~~t~~s~wv~~EI~~A 63 (111)
T 1eiw_A 3 AEIRLYITEGEVED----YRVFLERLEQSGLEW-RP--------------ATPEDADAVIVLAGLWGTRRDEILGAVDLA 63 (111)
T ss_dssp CCEEEEECCCCSHH----HHHHHHHHHHHCSCE-EE--------------CCSSSCSEEEEEGGGTTTSHHHHHHHHHHH
T ss_pred ceEEEEEecccHhH----HHHHHHHHhCCCCee-ec--------------CccccCCEEEEEeCCCcCCChHHHHHHHHH
Confidence 46999999999882 334444443435432 22 678999999999999999999999999887
Q ss_pred HHhhhhcCceeEeEE
Q 040920 94 LESKNKYGQIVVPVF 108 (163)
Q Consensus 94 ~~~~~~~~~~viPVf 108 (163)
.+. +..||-|.
T Consensus 64 ~~~----gkpIigV~ 74 (111)
T 1eiw_A 64 RKS----SKPIITVR 74 (111)
T ss_dssp TTT----TCCEEEEC
T ss_pred HHc----CCCEEEEE
Confidence 653 44566654
No 11
>3hyn_A Putative signal transduction protein; DUF1863 family protein, nucleotide-binding protein, structur genomics; HET: MSE; 1.20A {Eubacterium rectale atcc 33656}
Probab=97.03 E-value=0.0035 Score=47.59 Aligned_cols=111 Identities=21% Similarity=0.257 Sum_probs=73.5
Q ss_pred eeeEEEec--------------cccccccchHHHHHHHHhcCCeeeeecCC-C----C---C-CCcchHHHHHhhhhCce
Q 040920 15 KYDVFLSF--------------RGKDVRHNFISHLNAALCRKKIETFIDDK-L----N---R-GNEISPSLSSAIEGSKI 71 (163)
Q Consensus 15 ~ydVFISy--------------~~~D~~~~fv~~L~~~L~~~gi~~f~D~~-~----~---~-G~~i~~~i~~aI~~S~~ 71 (163)
+--+|++| ..+|. .....|..--.+..+-.|.|-. . . . -..|...|.+.|..|+.
T Consensus 5 rn~~YvaF~~~~~~~~~~~~~~a~~Di--~yy~lL~aWk~n~n~F~F~D~Hd~~y~vrDsS~~e~tIKrrLReRI~~Sk~ 82 (189)
T 3hyn_A 5 QNANYSAFYVSEPFSESNLGANSTHDF--VYYNMLRMWKGEDNSFPFNDAHDKTYNVRDGSDWEKTLKPRLHTRLDNSKN 82 (189)
T ss_dssp CCEEEEECCCCSSCCTTSTTGGGSTTH--HHHHHHHHHHHHCTTSSCCBTTTTCCCTTSCCCTTTTHHHHHHHHHHTEEE
T ss_pred ccCcEEEEeccCcccccccCCCccchH--HHHHHHHHHHcCCCceeecchhhccccccccccHHHHHHHHHHHHHHhcCc
Confidence 44578888 44554 4566666666655554556642 2 1 2 23577889999999999
Q ss_pred EEEEeecCCcCchhhHHHHHHHHHhhhhcCceeEeEEEecC-CcccccccCchHHHHHHH
Q 040920 72 SIVIFSKGYASSRLCLNELVKILESKNKYGQIVVPVFYLVD-PSDVRNQTGTFGDSFSKL 130 (163)
Q Consensus 72 ~IvvlS~~y~~S~wC~~El~~~~~~~~~~~~~viPVfy~v~-p~~v~~q~~~f~~~f~~~ 130 (163)
+|+++|++...|.|...|+..+++ +.+..||-|..+-. .+++.+-.|.|......+
T Consensus 83 vIllIs~~T~~s~~v~wEIe~Ai~---~~~~PII~Vy~~~~~~~~i~~~~g~~~~~~~~~ 139 (189)
T 3hyn_A 83 IILFLSSITANSRALREEMNYGIG---TKGLPVIVIYPDYDKKSDIVDSNGNFKKQIKDL 139 (189)
T ss_dssp EEEECCTTCCCCHHHHHHHHHHTT---TTCCCEEEEETTCCSGGGTBCTTSCBCHHHHHH
T ss_pred EEEEEecCccccchhHHHHHHHHH---hcCCcEEEEECCccccchhhhccccchhhHhhc
Confidence 999999999999999999999872 23567887765422 335554445544433333
No 12
>2f62_A Nucleoside 2-deoxyribosyltransferase; SGPP, structural genomics, PSI, S genomics of pathogenic protozoa consortium; HET: 12M; 1.50A {Trypanosoma brucei} SCOP: c.23.14.1 PDB: 2a0k_A* 2f2t_A* 2f64_A* 2f67_A*
Probab=94.12 E-value=0.42 Score=35.12 Aligned_cols=86 Identities=12% Similarity=0.080 Sum_probs=58.9
Q ss_pred CCceeeEEEecc--ccccccchHHHHHHHHhcCCeeeeecCC--CCCCCcchHHHHHhhhhCceEEEEeec--CCcCchh
Q 040920 12 PHIKYDVFLSFR--GKDVRHNFISHLNAALCRKKIETFIDDK--LNRGNEISPSLSSAIEGSKISIVIFSK--GYASSRL 85 (163)
Q Consensus 12 ~~~~ydVFISy~--~~D~~~~fv~~L~~~L~~~gi~~f~D~~--~~~G~~i~~~i~~aI~~S~~~IvvlS~--~y~~S~w 85 (163)
+...-.+++.-. ..+....+...+...|++.|+.+|.-.+ ...+..|.+.-.++|++|+++|++++| .-..++-
T Consensus 7 ~~~~~~~y~a~~~F~~~e~~~~~~~l~~~l~~~G~~v~~P~~~~~~~~~~i~~~d~~~i~~aD~vVA~ldpf~g~~~D~G 86 (161)
T 2f62_A 7 HHMRKIYIAGPAVFNPDMGASYYNKVRELLKKENVMPLIPTDNEATEALDIRQKNIQMIKDCDAVIADLSPFRGHEPDCG 86 (161)
T ss_dssp CCCCEEEEESGGGGSTTTTHHHHHHHHHHHHTTTCEEECTTTTCCSSHHHHHHHHHHHHHHCSEEEEECCCCSSSSCCHH
T ss_pred hhhhceEEEECCCCCHHHHHHHHHHHHHHHHHCCCEEECCCccCcchHHHHHHHHHHHHHhCCEEEEEecCCCCCCCCCc
Confidence 445556666632 2232036889999999999999987443 222334445558899999999999996 3334556
Q ss_pred hHHHHHHHHHhh
Q 040920 86 CLNELVKILESK 97 (163)
Q Consensus 86 C~~El~~~~~~~ 97 (163)
...|+..+....
T Consensus 87 TafEiGyA~Alg 98 (161)
T 2f62_A 87 TAFEVGCAAALN 98 (161)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHCC
Confidence 888999987653
No 13
>2khz_A C-MYC-responsive protein RCL; flexible loop, nucleus, phosphoprotein, nuclear protein; NMR {Rattus norvegicus} PDB: 2klh_A*
Probab=90.04 E-value=2.5 Score=30.75 Aligned_cols=78 Identities=10% Similarity=0.054 Sum_probs=51.9
Q ss_pred eeeEEEecccc-c-cccchHHHHHHHHhcCCeeeeecCCC-----CCCC-------cchHHHHHhhhhCceEEEEeecCC
Q 040920 15 KYDVFLSFRGK-D-VRHNFISHLNAALCRKKIETFIDDKL-----NRGN-------EISPSLSSAIEGSKISIVIFSKGY 80 (163)
Q Consensus 15 ~ydVFISy~~~-D-~~~~fv~~L~~~L~~~gi~~f~D~~~-----~~G~-------~i~~~i~~aI~~S~~~IvvlS~~y 80 (163)
+..|||+=.-. + ........+...|++.| .|+.+... ..|. .+...-.+.|++|+++|++++
T Consensus 11 ~~kVYLAGp~~~~~~~~~~~~~i~~~l~~~G-~V~~~~~~~p~~~~~g~~~~~~~~~i~~~d~~~i~~aD~vva~~~--- 86 (165)
T 2khz_A 11 PCSVYFCGSIRGGREDQALYARIVSRLRRYG-KVLTEHVADAELEPLGEEAAGGDQFIHEQDLNWLQQADVVVAEVT--- 86 (165)
T ss_dssp CCEEEEECCCSSCSHHHHHHHHHHHHHHHHS-EESGGGTTTTSSSCCSTTSTTCHHHHHHHHHHHHHHCSEEEEECS---
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHHHhcC-CcccccccCchhhccccccccCHHHHHHHHHHHHHhCCEEEEECC---
Confidence 45799984322 1 11225588999999999 88654332 1221 122334579999999999997
Q ss_pred cCchhhHHHHHHHHHh
Q 040920 81 ASSRLCLNELVKILES 96 (163)
Q Consensus 81 ~~S~wC~~El~~~~~~ 96 (163)
..+.-+..|+..+...
T Consensus 87 ~~d~Gt~~EiGyA~al 102 (165)
T 2khz_A 87 QPSLGVGYELGRAVAL 102 (165)
T ss_dssp SCCHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHC
Confidence 5577799999998764
No 14
>3ehd_A Uncharacterized conserved protein; PSI,MCSG,PF05014, structural genomics, protein structure INI midwest center for structural genomics; HET: MSE; 2.15A {Enterococcus faecalis}
Probab=80.59 E-value=7.8 Score=28.30 Aligned_cols=66 Identities=9% Similarity=0.146 Sum_probs=47.6
Q ss_pred chHHHHHHHHhcC--CeeeeecCC--C---CCCCc----chHHHHHhhhhCceEEEEeecCCcCchhhHHHHHHHHHh
Q 040920 30 NFISHLNAALCRK--KIETFIDDK--L---NRGNE----ISPSLSSAIEGSKISIVIFSKGYASSRLCLNELVKILES 96 (163)
Q Consensus 30 ~fv~~L~~~L~~~--gi~~f~D~~--~---~~G~~----i~~~i~~aI~~S~~~IvvlS~~y~~S~wC~~El~~~~~~ 96 (163)
.+...+.++|+.+ |+.+|.-.+ . .++.. |...-.++|++|+++|.++. ....+.....|+..+...
T Consensus 20 ~~~~~l~~~L~~~~~g~~v~~P~~~~~~~~~~~~~~~~~i~~~D~~~i~~aD~viA~ld-g~~~D~Gt~~EiG~A~a~ 96 (162)
T 3ehd_A 20 RYNAYLVEQIRQLDKTIDLYLPQENAAINDKSAYADSKMIALADTENVLASDLLVALLD-GPTIDAGVASEIGVAYAK 96 (162)
T ss_dssp HHHHHHHHHHHTTCTTEEEECGGGGSCCCCTTCCCCHHHHHHHHHHHHHTCSEEEEECC-SSSCCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCCCCEEECCCccccccccccchHHHHHHHHHHHHHHHCCEEEEECC-CCCCCCCHHHHHHHHHHC
Confidence 5788899999864 899986433 1 12222 44455568999999999995 344678889999998864
No 15
>4fyk_A Deoxyribonucleoside 5'-monophosphate N-glycosidas; hydrolas; HET: SRA; 1.79A {Rattus norvegicus} PDB: 4fyh_A* 4fyi_A* 2klh_A*
Probab=78.24 E-value=14 Score=26.68 Aligned_cols=76 Identities=14% Similarity=0.172 Sum_probs=50.8
Q ss_pred eEEEe--ccccccccchHHHHHHHHhcCCeeeeecC---C-C-CCCC-------cchHHHHHhhhhCceEEEEeecCCcC
Q 040920 17 DVFLS--FRGKDVRHNFISHLNAALCRKKIETFIDD---K-L-NRGN-------EISPSLSSAIEGSKISIVIFSKGYAS 82 (163)
Q Consensus 17 dVFIS--y~~~D~~~~fv~~L~~~L~~~gi~~f~D~---~-~-~~G~-------~i~~~i~~aI~~S~~~IvvlS~~y~~ 82 (163)
.|||+ +++.+....+...+...|++.| .|+-.. . + ..|+ .+.+.-.++|++|+++|.+++ ..
T Consensus 4 kIYlAGP~f~~~e~~~~~~~i~~~L~~~G-~Vl~~hv~~~~l~~~g~~~~~~~~~i~~~d~~~i~~aD~vvA~l~---~~ 79 (152)
T 4fyk_A 4 SVYFCGSIRGGREDQALYARIVSRLRRYG-KVLTEHVADAELEPLGEEAAGGDQFIHEQNLNWLQQADVVVAEVT---QP 79 (152)
T ss_dssp EEEEECCSTTCCTTHHHHHHHHHHHTTTS-EECCCC-------------CCCHHHHHHHHHHHHHHCSEEEEECS---SC
T ss_pred eEEEECCCCCcHHHHHHHHHHHHHHHHcC-cccccccCchhhhhccccccCCHHHHHHHHHHHHHHCCEEEEeCC---CC
Confidence 56665 3332222357799999999999 675321 1 1 1222 255566789999999999998 55
Q ss_pred chhhHHHHHHHHHh
Q 040920 83 SRLCLNELVKILES 96 (163)
Q Consensus 83 S~wC~~El~~~~~~ 96 (163)
|.-...|+..+...
T Consensus 80 d~Gt~~EiG~A~al 93 (152)
T 4fyk_A 80 SLGVGYELGRAVAL 93 (152)
T ss_dssp CHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHc
Confidence 77788899998865
No 16
>1s2d_A Purine trans deoxyribosylase; ribosylate intermediate, PTD, ARAA, transferase; HET: AR4 ADE; 2.10A {Lactobacillus helveticus} SCOP: c.23.14.1 PDB: 1s2g_A* 1s2i_A* 1s2l_A 1s3f_A*
Probab=72.25 E-value=20 Score=26.12 Aligned_cols=78 Identities=6% Similarity=0.105 Sum_probs=53.7
Q ss_pred eeEEEe---ccccccccchHHHHHHHHhcC--CeeeeecCC--C--------CCC--------CcchHHHHHhhhhCceE
Q 040920 16 YDVFLS---FRGKDVRHNFISHLNAALCRK--KIETFIDDK--L--------NRG--------NEISPSLSSAIEGSKIS 72 (163)
Q Consensus 16 ydVFIS---y~~~D~~~~fv~~L~~~L~~~--gi~~f~D~~--~--------~~G--------~~i~~~i~~aI~~S~~~ 72 (163)
-.|||. |+..+ ..+...+...|++. |+.+|.-.+ . ..| ..|.+.-.++|++|+++
T Consensus 8 ~kIYLAGP~F~~~~--~~~~~~~~~~L~~~~~g~~v~~P~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~D~~~i~~aD~v 85 (167)
T 1s2d_A 8 GKIYLGSPFYSDAQ--RERAAKAKELLAKNPSIAHVFFPFDDGFTDPDEKNPEIGGIRSMVWRDATYQNDLTGISNATCG 85 (167)
T ss_dssp EEEEEECCCSSHHH--HHHHHHHHHHHTTCTTEEEEECTTC-CCCCTTCC-CCTTSCCCHHHHHHHHHHHHHHHHHCSEE
T ss_pred cEEEEECCCCCHHH--HHHHHHHHHHHHhCCCcCEEECCccccccccccccccccccCChHHHHHHHHHHHHHHHhCCEE
Confidence 357776 33322 35789999999999 888886433 2 111 12344556789999999
Q ss_pred EEEeecCCcCchhhHHHHHHHHHh
Q 040920 73 IVIFSKGYASSRLCLNELVKILES 96 (163)
Q Consensus 73 IvvlS~~y~~S~wC~~El~~~~~~ 96 (163)
|.++...-. ++-...|+..+...
T Consensus 86 VA~ldg~~~-D~GTa~EiGyA~al 108 (167)
T 1s2d_A 86 VFLYDMDQL-DDGSAFXIGFMRAM 108 (167)
T ss_dssp EEEEESSSC-CHHHHHHHHHHHHT
T ss_pred EEECCCCCC-CCCceeehhhHhhC
Confidence 999987554 45678899988765
No 17
>2yvq_A Carbamoyl-phosphate synthase; conserved hypothetical protein, structural genomics, NPPSFA; 1.98A {Homo sapiens}
Probab=69.69 E-value=9.4 Score=26.95 Aligned_cols=62 Identities=11% Similarity=0.143 Sum_probs=40.8
Q ss_pred EEEeccccccccchHHHHHHHHhcCCeeeeecC-------------C-CC---CC-C-cchHHHHHhhhhCceEEEEeec
Q 040920 18 VFLSFRGKDVRHNFISHLNAALCRKKIETFIDD-------------K-LN---RG-N-EISPSLSSAIEGSKISIVIFSK 78 (163)
Q Consensus 18 VFISy~~~D~~~~fv~~L~~~L~~~gi~~f~D~-------------~-~~---~G-~-~i~~~i~~aI~~S~~~IvvlS~ 78 (163)
||||.+..|. .-+-.+.+.|...|++++--. . +. -| + .-.++|.+.|++-++-+||..|
T Consensus 27 vliSv~d~dK--~~l~~~a~~l~~lGf~i~AT~GTa~~L~~~Gi~v~~v~k~~egg~~~~~~~i~d~i~~g~i~lVInt~ 104 (143)
T 2yvq_A 27 ILIGIQQSFR--PRFLGVAEQLHNEGFKLFATEATSDWLNANNVPATPVAWPSQEGQNPSLSSIRKLIRDGSIDLVINLP 104 (143)
T ss_dssp EEEECCGGGH--HHHHHHHHHHHTTTCEEEEEHHHHHHHHHTTCCCEEECCGGGC-----CBCHHHHHHTTSCCEEEECC
T ss_pred EEEEecccch--HHHHHHHHHHHHCCCEEEECchHHHHHHHcCCeEEEEEeccCCCcccccccHHHHHHCCCceEEEECC
Confidence 9999987764 345556778888888876211 0 11 11 1 0115789999999999999988
Q ss_pred CCc
Q 040920 79 GYA 81 (163)
Q Consensus 79 ~y~ 81 (163)
+-.
T Consensus 105 ~~~ 107 (143)
T 2yvq_A 105 NNN 107 (143)
T ss_dssp CCC
T ss_pred CCC
Confidence 763
No 18
>2jug_A TUBC protein; docking domain, dimer, nonribosomal peptide synthetase, tubulysin, ligase, phosphopantetheine, biosynthetic protein; NMR {Angiococcus disciformis}
Probab=60.73 E-value=6 Score=24.99 Aligned_cols=39 Identities=18% Similarity=0.348 Sum_probs=28.8
Q ss_pred HHHHHHHHhcCCeeeeecCC-CC---CCCcchHHHHHhhhhCc
Q 040920 32 ISHLNAALCRKKIETFIDDK-LN---RGNEISPSLSSAIEGSK 70 (163)
Q Consensus 32 v~~L~~~L~~~gi~~f~D~~-~~---~G~~i~~~i~~aI~~S~ 70 (163)
+..|...|.+.||..|.|.+ +. |-..+.+++...+.+.+
T Consensus 7 ~~~ll~~l~~~gi~l~~eg~kLr~~ap~g~l~~~l~~~l~~~K 49 (78)
T 2jug_A 7 AGALLAHAASLGVRLWVEGERLRFQAPPGVMTPELQSRLGGAR 49 (78)
T ss_dssp HHHHHHHHHHHTCEEEEETTEEEEECCTTTTCHHHHHHHTTCH
T ss_pred HHHHHHHHHHcCCEEEEECCEeeeecCccccCHHHHHHHHHHH
Confidence 34677889999999999886 42 44467778877777654
No 19
>1byr_A Protein (endonuclease); phosphodiesterase,; 2.00A {Salmonella typhimurium} SCOP: d.136.1.1 PDB: 1bys_A
Probab=46.79 E-value=55 Score=22.21 Aligned_cols=11 Identities=9% Similarity=-0.176 Sum_probs=5.3
Q ss_pred hHHHHHHHHhc
Q 040920 31 FISHLNAALCR 41 (163)
Q Consensus 31 fv~~L~~~L~~ 41 (163)
+...|...+.+
T Consensus 15 ~~~~~~~~i~~ 25 (155)
T 1byr_A 15 ARVLVLSAIDS 25 (155)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 44455555543
No 20
>3aon_B V-type sodium ATPase subunit G; V-ATPase, coiled-coil, alpha/beta fold, hydrol Na(+)-ATPase, NTPA3-NTPB3, NTPC, central AXIS; HET: MSE; 2.00A {Enterococcus hirae}
Probab=42.08 E-value=28 Score=23.73 Aligned_cols=49 Identities=6% Similarity=0.108 Sum_probs=32.0
Q ss_pred HHhcCCeeeeecCCCCCCCcchHHHHHhhhhCceEEEEeecCCcCchhhHHHHHH
Q 040920 38 ALCRKKIETFIDDKLNRGNEISPSLSSAIEGSKISIVIFSKGYASSRLCLNELVK 92 (163)
Q Consensus 38 ~L~~~gi~~f~D~~~~~G~~i~~~i~~aI~~S~~~IvvlS~~y~~S~wC~~El~~ 92 (163)
-+.-.|+.+|... .-+.+.+.+.+.+++ ++.|++++++.+.. +.+++..
T Consensus 16 GFrLaGie~~~v~---~~ee~~~~~~~l~~~-digIIlIte~ia~~--i~~~i~~ 64 (115)
T 3aon_B 16 PFRLFGFDVQHGT---TKTEIRKTIDEMAKN-EYGVIYITEQCANL--VPETIER 64 (115)
T ss_dssp GGGGGTCEEECCC---SHHHHHHHHHHHHHT-TEEEEEEEHHHHTT--CHHHHHH
T ss_pred HHHHcCCeEEEeC---CHHHHHHHHHHHHhc-CceEEEEeHHHHHH--hHHHHHH
Confidence 3455688887532 223455566777777 99999999998762 4444444
No 21
>1f8y_A Nucleoside 2-deoxyribosyltransferase; active site, alpha/beta protein, biocatalyst, X- RAY crystallography; HET: 5MD; 2.40A {Lactobacillus leichmannii} SCOP: c.23.14.1 PDB: 1f8x_A*
Probab=39.63 E-value=75 Score=22.64 Aligned_cols=78 Identities=10% Similarity=0.077 Sum_probs=51.1
Q ss_pred eEEEe---ccccccccchHHHHHHHHhcCCe----eeeecCC--C--------CCC-------CcchHHHHHhhhhCceE
Q 040920 17 DVFLS---FRGKDVRHNFISHLNAALCRKKI----ETFIDDK--L--------NRG-------NEISPSLSSAIEGSKIS 72 (163)
Q Consensus 17 dVFIS---y~~~D~~~~fv~~L~~~L~~~gi----~~f~D~~--~--------~~G-------~~i~~~i~~aI~~S~~~ 72 (163)
.||+. |+... .....++...|+.+|. .+|.-.+ . ..+ ..|.+.-.++|++|+++
T Consensus 5 kIYLAGP~F~~~q--~~~~~~~~~~L~~~g~v~~~~v~~P~~~~~~~~~~~~~~~~~~~~~~~~~I~~~D~~~i~~aD~v 82 (157)
T 1f8y_A 5 TIYFGAGWFTDRQ--NKAYKEAMEALKENPTIDLENSYVPLDNQYKGIRVDEHPEYLHDKVWATATYNNDLNGIKTNDIM 82 (157)
T ss_dssp CEEEECCCSSHHH--HHHHHHHHHHHHHCTTBCCTTSBCGGGCSGGGCCTTTCGGGGGCHHHHHHHHHHHHHHHHTSSEE
T ss_pred EEEEECCCCCHHH--HHHHHHHHHHHHHCCCccccceECcccccccccccccccccccChHHHHHHHHHhHHHHHhCCEE
Confidence 36665 33332 3578899999998885 6765332 2 111 12344556789999999
Q ss_pred EEEeecCCcCchhhHHHHHHHHHhh
Q 040920 73 IVIFSKGYASSRLCLNELVKILESK 97 (163)
Q Consensus 73 IvvlS~~y~~S~wC~~El~~~~~~~ 97 (163)
|.++...-. ++-...|+..+....
T Consensus 83 vA~ldg~~~-D~GT~~EiGyA~A~g 106 (157)
T 1f8y_A 83 LGVYIPDEE-DVGLGMELGYALSQG 106 (157)
T ss_dssp EEECCGGGC-CHHHHHHHHHHHHTT
T ss_pred EEEcCCCCC-CccHHHHHHHHHHCC
Confidence 999985433 456788999987653
No 22
>2d00_A V-type ATP synthase subunit F; V-ATPase, CHEY, FRET, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.149.1.1 PDB: 3a5c_H* 3a5d_H 3j0j_H*
Probab=35.81 E-value=86 Score=20.93 Aligned_cols=43 Identities=12% Similarity=0.171 Sum_probs=30.7
Q ss_pred HHHhcCCeeeeecCCCCCCCcchHHHHHhhhhCceEEEEeecCCcC
Q 040920 37 AALCRKKIETFIDDKLNRGNEISPSLSSAIEGSKISIVIFSKGYAS 82 (163)
Q Consensus 37 ~~L~~~gi~~f~D~~~~~G~~i~~~i~~aI~~S~~~IvvlS~~y~~ 82 (163)
.-+.-.|+.+|.-. ..+.+.+.+.+.+++-++.|++++++.+.
T Consensus 16 ~GFrLaGi~~~~v~---~~ee~~~~~~~l~~~~digIIlIte~~a~ 58 (109)
T 2d00_A 16 QGFRLAGLEGYGAS---SAEEAQSLLETLVERGGYALVAVDEALLP 58 (109)
T ss_dssp HHHHHTTSEEEECS---SHHHHHHHHHHHHHHCCCSEEEEETTTCS
T ss_pred HHHHHcCCeEEEeC---CHHHHHHHHHHHhhCCCeEEEEEeHHHHH
Confidence 34455688887532 22445566777777789999999999988
No 23
>1sc3_B Interleukin-1 beta convertase; malonate-bound caspase-1, hydrolase; 1.80A {Homo sapiens} SCOP: c.17.1.1 PDB: 1ice_B 1bmq_B* 1rwm_B* 1rwk_B* 1rwo_B* 1rwp_B* 1rwv_B* 1rww_B* 1rwn_B* 1sc1_B 1rwx_B 1sc4_B 2h4y_B* 2hbq_B* 2hbr_B* 3ns7_B* 3d6f_B* 3d6h_B* 3d6m_B* 2h4w_B* ...
Probab=34.86 E-value=9.6 Score=24.79 Aligned_cols=24 Identities=21% Similarity=0.268 Sum_probs=15.0
Q ss_pred EeccccccccchHHHHHHHHhcCC
Q 040920 20 LSFRGKDVRHNFISHLNAALCRKK 43 (163)
Q Consensus 20 ISy~~~D~~~~fv~~L~~~L~~~g 43 (163)
.|||+......|+..|.+.|++.+
T Consensus 22 ~S~R~~~~GSwfIq~Lc~~l~~~~ 45 (88)
T 1sc3_B 22 VSWRHPTMGSVFIGRLIEHMQEYA 45 (88)
T ss_dssp CCCEETTTEEHHHHHHHHHHHHHT
T ss_pred EeeEcCCCCCHHHHHHHHHHHHhC
Confidence 344444334568888888887643
No 24
>2ql9_B Caspase-7; cysteine protease, apoptosis, thiol protease, zymogen, hydro hydrolase inhibitor complex; HET: CIT; 2.14A {Homo sapiens} PDB: 2ql7_B* 2ql5_B* 2qlb_B* 2qlf_B 2qlj_B* 3edr_B 3ibc_B 3ibf_B 1i51_B
Probab=31.66 E-value=11 Score=24.83 Aligned_cols=30 Identities=13% Similarity=0.227 Sum_probs=18.4
Q ss_pred ceeeEEEecccc---------ccccchHHHHHHHHhcCC
Q 040920 14 IKYDVFLSFRGK---------DVRHNFISHLNAALCRKK 43 (163)
Q Consensus 14 ~~ydVFISy~~~---------D~~~~fv~~L~~~L~~~g 43 (163)
..-|.+++|+.. +....|+..|.+.|++.|
T Consensus 9 ~~aDfL~~yST~pG~~S~R~~~~GSwfIq~Lc~~l~~~~ 47 (97)
T 2ql9_B 9 VEADFLFAYSTVPGYYSWRSPGRGSWFVQALCSILEEHG 47 (97)
T ss_dssp TTTTEEEEESSCTTBCCEEETTTEEHHHHHHHHHHHHHT
T ss_pred CCCCEEEEEeCCCCcEeeecCCCCCeeHHHHHHHHHHhC
Confidence 345777766533 233457788888887543
No 25
>4a6h_A Phosphatidylinositol 4,5-bisphosphate-binding Pro SLM1; signaling protein; HET: I4C; 1.45A {Saccharomyces cerevisiae} PDB: 3nsu_A* 4a6f_A* 4a6k_A* 4a6f_B* 4a5k_A
Probab=31.27 E-value=28 Score=23.62 Aligned_cols=20 Identities=10% Similarity=0.295 Sum_probs=15.7
Q ss_pred hChHHHHHHHHHHHHhhccc
Q 040920 136 EKIDMLQTWRIAMREAANLS 155 (163)
Q Consensus 136 ~~~e~~~~W~~aL~~v~~~~ 155 (163)
.+.+..++|.+||..++.++
T Consensus 101 ~s~~e~~~Wv~aI~~~~~~~ 120 (120)
T 4a6h_A 101 DSYESMMSWFDNLKILTSTS 120 (120)
T ss_dssp SSHHHHHHHHHHHHHHCC--
T ss_pred CCHHHHHHHHHHHHHHhccC
Confidence 36788999999999998763
No 26
>3czq_A Putative polyphosphate kinase 2; structural genomics, APC6299, PSI-2, structure initiative; HET: MSE GOL; 2.23A {Sinorhizobium meliloti}
Probab=31.20 E-value=70 Score=25.58 Aligned_cols=99 Identities=14% Similarity=0.206 Sum_probs=57.9
Q ss_pred eEEEeccccccc--cchHHHHHHHHhcCCeeeeecCC---CCCCCcchHHHHHhhhhCceEEEEeecCCcCch-------
Q 040920 17 DVFLSFRGKDVR--HNFISHLNAALCRKKIETFIDDK---LNRGNEISPSLSSAIEGSKISIVIFSKGYASSR------- 84 (163)
Q Consensus 17 dVFISy~~~D~~--~~fv~~L~~~L~~~gi~~f~D~~---~~~G~~i~~~i~~aI~~S~~~IvvlS~~y~~S~------- 84 (163)
-|||.|-|-|.. .+-+..|...|..+|++|..-.. -+.+..+...+..++-. +--|+|+-+.+-++-
T Consensus 86 ~vlIvfEG~DgAGKgt~Ik~L~e~Ldprg~~V~~~~~Pt~eE~~~~yl~R~~~~LP~-~G~IvIfDRswYs~v~~~rv~g 164 (304)
T 3czq_A 86 RVMAVFEGRDAAGKGGAIHATTANMNPRSARVVALTKPTETERGQWYFQRYVATFPT-AGEFVLFDRSWYNRAGVEPVMG 164 (304)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTTSCTTTEEEEECCSCCHHHHTSCTTHHHHTTCCC-TTCEEEEEECGGGGTTHHHHHT
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHhcccCCeEEEeCCcChHHHhchHHHHHHHhccc-CCeEEEEECCcchHHHHHHHhc
Confidence 589999887753 46789999999999998865332 22333444445555533 334556666654332
Q ss_pred hhHH-HHHHHHHh-------hhhcCceeEeEEEecCCccc
Q 040920 85 LCLN-ELVKILES-------KNKYGQIVVPVFYLVDPSDV 116 (163)
Q Consensus 85 wC~~-El~~~~~~-------~~~~~~~viPVfy~v~p~~v 116 (163)
.|.. |....++. ....+..++-+|++++|..-
T Consensus 165 ~~~~~e~~~~~~~In~FE~~L~~~G~~~lKf~L~Is~eeq 204 (304)
T 3czq_A 165 FCTPDQYEQFLKEAPRFEEMIANEGIHLFKFWINIGREMQ 204 (304)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEECCHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhCCCeeEEEEEECCHHHH
Confidence 2322 22222221 12246678888889888754
No 27
>1qtn_B Caspase-8; apoptosis, dithiane-DIOL, caspase, cysteine-protease, hydrol hydrolase inhibitor complex; 1.20A {Homo sapiens} SCOP: c.17.1.1 PDB: 3kjn_B* 3kjq_B* 2y1l_B 1f9e_B* 1qdu_B*
Probab=30.88 E-value=11 Score=24.90 Aligned_cols=29 Identities=17% Similarity=0.198 Sum_probs=18.6
Q ss_pred ceeeEEEeccccc---------cccchHHHHHHHHhcC
Q 040920 14 IKYDVFLSFRGKD---------VRHNFISHLNAALCRK 42 (163)
Q Consensus 14 ~~ydVFISy~~~D---------~~~~fv~~L~~~L~~~ 42 (163)
..-|.+++|+..+ ....|+..|.+.|++.
T Consensus 11 ~~aDfL~~ysT~pG~~S~R~~~~GSwfIq~Lc~~l~~~ 48 (95)
T 1qtn_B 11 DEADFLLGMATVNNCVSYRNPAEGTWYIQSLCQSLRER 48 (95)
T ss_dssp TTCSEEEEESSCTTBCCEEETTTEEHHHHHHHHHHHHH
T ss_pred CCCCEEEEEeCCCCcEEEecCCCCcHHHHHHHHHHHHh
Confidence 3568888876443 2345777787777653
No 28
>2dko_B Caspase-3; low barrier hydrogen bond, caspase, drug design, radiation D tetrahedral intermediate, protease; 1.06A {Homo sapiens} PDB: 2c2k_B* 2c2m_B* 2c2o_B* 2c1e_B* 2cdr_B* 2cnk_B* 2cnl_B* 2cnn_B* 2cno_B* 2cjy_B 1pau_B 1re1_B* 1rhk_B* 1rhm_B* 1rhq_B* 1rhr_B* 1rhu_B* 1rhj_B* 1i3o_B* 3edq_B ...
Probab=28.40 E-value=13 Score=24.75 Aligned_cols=29 Identities=21% Similarity=0.237 Sum_probs=18.5
Q ss_pred ceeeEEEeccccc---------cccchHHHHHHHHhcC
Q 040920 14 IKYDVFLSFRGKD---------VRHNFISHLNAALCRK 42 (163)
Q Consensus 14 ~~ydVFISy~~~D---------~~~~fv~~L~~~L~~~ 42 (163)
..-|.+++|+..+ ....|+..|.+.|++.
T Consensus 15 ~~aDfL~~yST~pG~vS~R~~~~GSwfIq~Lc~~l~~~ 52 (103)
T 2dko_B 15 VEADFLYAYSTAPGYYSWRNSKDGSWFIQSLCAMLKQY 52 (103)
T ss_dssp TTTTEEEEESSCTTBCCEEETTTEEHHHHHHHHHHHHH
T ss_pred CCCCEEEEEeCCCCcEeEEcCCCCCeeHHHHHHHHHHh
Confidence 3467787776432 2345778888888754
No 29
>1wu7_A Histidyl-tRNA synthetase; ligase, structural genomics, dimer; 2.40A {Thermoplasma acidophilum} SCOP: c.51.1.1 d.104.1.1
Probab=28.03 E-value=1.1e+02 Score=25.00 Aligned_cols=60 Identities=18% Similarity=0.189 Sum_probs=37.7
Q ss_pred eeeEEEeccccccccchHHHHHHHHhcCCeeeeecCCCCCCCcchHHHHHhhhhCceEEEEeec
Q 040920 15 KYDVFLSFRGKDVRHNFISHLNAALCRKKIETFIDDKLNRGNEISPSLSSAIEGSKISIVIFSK 78 (163)
Q Consensus 15 ~ydVFISy~~~D~~~~fv~~L~~~L~~~gi~~f~D~~~~~G~~i~~~i~~aI~~S~~~IvvlS~ 78 (163)
.+||+|..-+++. ...+..|...|.+.|+.|-+|.. +..+...+..|-..---.++|+.+
T Consensus 332 p~~v~v~~~~~~~-~~~a~~l~~~Lr~~Gi~v~~d~~---~~~~~~~~~~a~~~g~~~~iiiG~ 391 (434)
T 1wu7_A 332 KKSVYICRVGKIN-SSIMNEYSRKLRERGMNVTVEIM---ERGLSAQLKYASAIGADFAVIFGE 391 (434)
T ss_dssp SCEEEEEEESSCC-HHHHHHHHHHHHTTTCEEEECCS---CCCHHHHHHHHHHTTCSEEEEEEH
T ss_pred CCcEEEEEcChHH-HHHHHHHHHHHHHCCCeEEEecC---CCCHHHHHHHHHHCCCCEEEEECc
Confidence 4889866544443 35778999999999999988764 234444554444332234555554
No 30
>1pyo_B Caspase-2; apoptosis, caspase, alpha-beta, thiol protease, hydrolase-HY inhibitor complex; 1.65A {Homo sapiens} SCOP: c.17.1.1 PDB: 2p2c_B 3r5j_B 3r6g_B 3r7b_B 3r7n_B 3r7s_B 3r6l_B
Probab=27.62 E-value=14 Score=24.73 Aligned_cols=28 Identities=11% Similarity=0.221 Sum_probs=18.0
Q ss_pred eeeEEEecccc---------ccccchHHHHHHHHhcC
Q 040920 15 KYDVFLSFRGK---------DVRHNFISHLNAALCRK 42 (163)
Q Consensus 15 ~ydVFISy~~~---------D~~~~fv~~L~~~L~~~ 42 (163)
.-|.+++|+.. .....|+..|.+.|++.
T Consensus 14 ~aDfL~~yST~pG~~S~R~~~~GSwFIq~Lc~~l~~~ 50 (105)
T 1pyo_B 14 RSDMICGYACLKGTAAMRNTKRGSWYIEALAQVFSER 50 (105)
T ss_dssp SCSEEEEESSCTTBCCEEETTTEEHHHHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCcEEEecCCCCCHHHHHHHHHHHHH
Confidence 56777776533 23346788888888753
No 31
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=27.36 E-value=62 Score=23.53 Aligned_cols=31 Identities=23% Similarity=0.371 Sum_probs=24.3
Q ss_pred EEeccccccc--cchHHHHHHHHhcCCeeeeec
Q 040920 19 FLSFRGKDVR--HNFISHLNAALCRKKIETFID 49 (163)
Q Consensus 19 FISy~~~D~~--~~fv~~L~~~L~~~gi~~f~D 49 (163)
||.+-|-|.. .+.+..|.+.|+.+|+.+..-
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~t 34 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILK 34 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEE
Confidence 8888777742 468899999999999887543
No 32
>1v95_A Nuclear receptor coactivator 5; coactivator independent of AF-2 function (CIA), structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: c.51.1.1
Probab=27.34 E-value=1e+02 Score=21.46 Aligned_cols=49 Identities=8% Similarity=0.098 Sum_probs=33.4
Q ss_pred cchHHHHHHHHhcCCeeeeecCCCCCCCcchHHHHHhhhhCceEEEEeec
Q 040920 29 HNFISHLNAALCRKKIETFIDDKLNRGNEISPSLSSAIEGSKISIVIFSK 78 (163)
Q Consensus 29 ~~fv~~L~~~L~~~gi~~f~D~~~~~G~~i~~~i~~aI~~S~~~IvvlS~ 78 (163)
..++..+...|...|+.+=+|.. ..++.+...|.++-.+---.++|+.+
T Consensus 21 ~~YA~~V~~~L~~~GiRvevD~~-r~~e~Lg~kIR~a~~~kvPy~lVVG~ 69 (130)
T 1v95_A 21 KDYAESVGRKVRDLGMVVDLIFL-NTEVSLSQALEDVSRGGSPFAIVITQ 69 (130)
T ss_dssp GHHHHHHHHHHHTTTCCEEEEEC-TTSSCHHHHHHHHHHHTCSEEEEECH
T ss_pred HHHHHHHHHHHHHCCCEEEEecC-CCCCcHHHHHHHHHHcCCCEEEEEec
Confidence 47999999999999999977541 22566666666655443345555543
No 33
>1v5p_A Pleckstrin homology domain-containing, family A; TAPP2, the pleckstrin homology domain, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1
Probab=27.27 E-value=38 Score=22.96 Aligned_cols=20 Identities=20% Similarity=0.365 Sum_probs=16.9
Q ss_pred hChHHHHHHHHHHHHhhccc
Q 040920 136 EKIDMLQTWRIAMREAANLS 155 (163)
Q Consensus 136 ~~~e~~~~W~~aL~~v~~~~ 155 (163)
++++..+.|.+||..++.+.
T Consensus 103 ~s~~e~~~Wi~al~~a~~~~ 122 (126)
T 1v5p_A 103 NDQKDLKDWVEALNQASKSG 122 (126)
T ss_dssp SSHHHHHHHHHHHHHTTTTS
T ss_pred CCHHHHHHHHHHHHHHHhcC
Confidence 45788999999999998765
No 34
>4h3d_A 3-dehydroquinate dehydratase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, aldolase class I; HET: PGE SHL; 1.95A {Clostridium difficile} PDB: 3js3_A*
Probab=27.00 E-value=77 Score=24.45 Aligned_cols=66 Identities=20% Similarity=0.248 Sum_probs=37.5
Q ss_pred HHHHHhcCCeeeeecCCCCCCCcchHHHHHhhhhCceEEEEeecCCcCchhhHHHHHHHHHhhhhcC
Q 040920 35 LNAALCRKKIETFIDDKLNRGNEISPSLSSAIEGSKISIVIFSKGYASSRLCLNELVKILESKNKYG 101 (163)
Q Consensus 35 L~~~L~~~gi~~f~D~~~~~G~~i~~~i~~aI~~S~~~IvvlS~~y~~S~wC~~El~~~~~~~~~~~ 101 (163)
|...+...|.--|+|-++..++.+..++.+.......-| |+|-+..+..|-.+|+...+..+...+
T Consensus 104 ll~~~~~~~~~d~iDvEl~~~~~~~~~l~~~a~~~~~ki-I~S~Hdf~~TP~~~el~~~~~~~~~~g 169 (258)
T 4h3d_A 104 LNKEISNTGLVDLIDVELFMGDEVIDEVVNFAHKKEVKV-IISNHDFNKTPKKEEIVSRLCRMQELG 169 (258)
T ss_dssp HHHHHHHTTCCSEEEEEGGGCHHHHHHHHHHHHHTTCEE-EEEEEESSCCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHhcCCchhhHHhhhccHHHHHHHHHHHHhCCCEE-EEEEecCCCCCCHHHHHHHHHHHHHhC
Confidence 334444445444566665444444455555555555544 455555555666788888877665555
No 35
>3net_A Histidyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, structural genomics, PSI- nostoc, protein structure initiative; 2.70A {Nostoc SP}
Probab=26.08 E-value=87 Score=26.15 Aligned_cols=62 Identities=8% Similarity=0.044 Sum_probs=41.7
Q ss_pred ceeeEEEeccccccccchHHHHHHHHhcCCeeeeecCCCCCCCcchHHHHHhhhhCceEEEEeecC
Q 040920 14 IKYDVFLSFRGKDVRHNFISHLNAALCRKKIETFIDDKLNRGNEISPSLSSAIEGSKISIVIFSKG 79 (163)
Q Consensus 14 ~~ydVFISy~~~D~~~~fv~~L~~~L~~~gi~~f~D~~~~~G~~i~~~i~~aI~~S~~~IvvlS~~ 79 (163)
..+||+|-.-+++. ...+-.+...|++.|++|-+|.. +..+...+..|-..---.++|+.++
T Consensus 370 ~p~~V~Vi~~~~~~-~~~A~~la~~LR~~Gi~ve~d~~---~~sl~~q~k~A~~~g~p~~iiiG~~ 431 (465)
T 3net_A 370 TPAQVVVVNMQDEL-MPTYLKVSQQLRQAGLNVITNFE---KRQLGKQFQAADKQGIRFCVIIGAD 431 (465)
T ss_dssp CSCCEEECCSCGGG-HHHHHHHHHHHHHTTCCEEECCS---CCCHHHHHHHHHHHTCCEEEECCHH
T ss_pred CCCeEEEEEcCHHH-HHHHHHHHHHHHHCCCEEEEEeC---CCCHHHHHHHHHHcCCCEEEEECch
Confidence 34799986655443 35788999999999999988764 3345555555555444466666654
No 36
>3lc0_A Histidyl-tRNA synthetase; tRNA-ligase, aminoacyl-tRNA synthetase, ligase, structural G medical structural genomics of pathogenic protozoa; HET: HIS; 1.80A {Trypanosoma cruzi} PDB: 3hrk_A* 3hri_A
Probab=26.07 E-value=1.4e+02 Score=24.91 Aligned_cols=61 Identities=10% Similarity=-0.046 Sum_probs=39.9
Q ss_pred ceeeEEEeccccccccchHHHHHHHHhcCCeeeeecCCCCCCCcchHHHHHhhhhCceEEEEeec
Q 040920 14 IKYDVFLSFRGKDVRHNFISHLNAALCRKKIETFIDDKLNRGNEISPSLSSAIEGSKISIVIFSK 78 (163)
Q Consensus 14 ~~ydVFISy~~~D~~~~fv~~L~~~L~~~gi~~f~D~~~~~G~~i~~~i~~aI~~S~~~IvvlS~ 78 (163)
...||||..-+++.. .-+-.+...|++.|++|-+|.. +..+..++..|-+.--..++|+.+
T Consensus 360 ~~~~v~v~~~~~~~~-~~a~~la~~LR~~Gi~ve~~~~---~~slkkq~k~A~k~ga~~vviiGe 420 (456)
T 3lc0_A 360 HVVDDVVIPFDESMR-PHALAVLRRLRDAGRSADIILD---KKKVVQAFNYADRVGAVRAVLVAP 420 (456)
T ss_dssp CCEEEEEEESSGGGH-HHHHHHHHHHHHTTCCEEECCS---CCCHHHHHHHHHHTTEEEEEEECH
T ss_pred CCCcEEEEEcCHHHH-HHHHHHHHHHHHCCCeEEEecC---CCCHHHHHHHHHHcCCCEEEEECC
Confidence 347888776555542 4567889999999999977643 234655666665554445666553
No 37
>3ro3_B Minsc, peptide of protein inscuteable homolog; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=25.82 E-value=51 Score=15.74 Aligned_cols=14 Identities=21% Similarity=0.529 Sum_probs=11.1
Q ss_pred hHHHHHHHHHHHHh
Q 040920 138 IDMLQTWRIAMREA 151 (163)
Q Consensus 138 ~e~~~~W~~aL~~v 151 (163)
-+-||+|.+-|...
T Consensus 7 vDSV~rWmeDLr~M 20 (22)
T 3ro3_B 7 VDSVQRWMEDLKLM 20 (26)
T ss_pred hHHHHHHHHHHHhh
Confidence 47899999988754
No 38
>2yry_A Pleckstrin homology domain-containing family A member 6; PH domain, PEPP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.73 E-value=43 Score=21.67 Aligned_cols=19 Identities=37% Similarity=0.503 Sum_probs=15.7
Q ss_pred hChHHHHHHHHHHHHhhcc
Q 040920 136 EKIDMLQTWRIAMREAANL 154 (163)
Q Consensus 136 ~~~e~~~~W~~aL~~v~~~ 154 (163)
++.+..+.|..||..++.+
T Consensus 103 ~s~~e~~~Wi~al~~a~~~ 121 (122)
T 2yry_A 103 ESPEEQEAWIQAMGEAARV 121 (122)
T ss_dssp SSHHHHHHHHHHHHHHHCC
T ss_pred CCHHHHHHHHHHHHHHHhc
Confidence 3578889999999998765
No 39
>1bax_A M-PMV MA, M-PMV matrix protein; core protein, polyprotein, myristylation; NMR {Mason-pfizer monkey virus} SCOP: a.61.1.3 PDB: 2f76_X 2f77_X
Probab=25.35 E-value=36 Score=22.61 Aligned_cols=18 Identities=17% Similarity=0.449 Sum_probs=16.6
Q ss_pred cchHHHHHHHHhcCCeee
Q 040920 29 HNFISHLNAALCRKKIET 46 (163)
Q Consensus 29 ~~fv~~L~~~L~~~gi~~ 46 (163)
..|+..|...|..+||+|
T Consensus 9 q~fi~~lk~lLk~RgIkV 26 (94)
T 1bax_A 9 ERYVEQLKQALKTRGVKV 26 (94)
T ss_pred hHHHHHHHHHHHHcCeee
Confidence 469999999999999998
No 40
>1evl_A Threonyl-tRNA synthetase; amino acid recognition, zinc ION, adenylate analog, deletion mutant, ligase; HET: TSB; 1.55A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1evk_A* 1fyf_A* 1kog_A*
Probab=24.77 E-value=97 Score=25.10 Aligned_cols=60 Identities=10% Similarity=0.111 Sum_probs=39.4
Q ss_pred eeeEEEeccccccccchHHHHHHHHhcCCeeeeecCCCCCCCcchHHHHHhhhhCceEEEEeec
Q 040920 15 KYDVFLSFRGKDVRHNFISHLNAALCRKKIETFIDDKLNRGNEISPSLSSAIEGSKISIVIFSK 78 (163)
Q Consensus 15 ~ydVFISy~~~D~~~~fv~~L~~~L~~~gi~~f~D~~~~~G~~i~~~i~~aI~~S~~~IvvlS~ 78 (163)
.++|+|---+++. ...+..|...|++.|+.|-+|.. +..+...+..|-..---.++|+.+
T Consensus 298 p~~v~vi~~~~~~-~~~a~~l~~~Lr~~Gi~v~~d~~---~~~~~~k~~~A~~~g~p~~iiiG~ 357 (401)
T 1evl_A 298 PVQVVIMNITDSQ-SEYVNELTQKLSNAGIRVKADLR---NEKIGFKIREHTLRRVPYMLVCGD 357 (401)
T ss_dssp SSCEEEEESSGGG-HHHHHHHHHHHHHTTCCEEEECC---SSCHHHHHHHHHHTTCSEEEEECH
T ss_pred CeEEEEEecCHHH-HHHHHHHHHHHHHCCCEEEEECC---CCCHHHHHHHHHhcCCCEEEEECc
Confidence 4788876544433 46788999999999999988864 334555555554433335555544
No 41
>4g84_A Histidine--tRNA ligase, cytoplasmic; synthetase; 2.40A {Homo sapiens}
Probab=24.45 E-value=1.3e+02 Score=24.56 Aligned_cols=62 Identities=15% Similarity=0.090 Sum_probs=38.6
Q ss_pred ceeeEEEeccccccccchHHHHHHHHhcCCeeeeecCCCCCCCcchHHHHHhhhhCceEEEEeec
Q 040920 14 IKYDVFLSFRGKDVRHNFISHLNAALCRKKIETFIDDKLNRGNEISPSLSSAIEGSKISIVIFSK 78 (163)
Q Consensus 14 ~~ydVFISy~~~D~~~~fv~~L~~~L~~~gi~~f~D~~~~~G~~i~~~i~~aI~~S~~~IvvlS~ 78 (163)
...||+|...+++. ...+-.|...|.+.||++-+|.. .+..+..++..|=..---.++|+.+
T Consensus 365 ~~~~v~v~~~~~~~-~~~a~~l~~~Lr~~Gi~ve~~~~--~~~~l~~q~k~A~~~g~~~~viiG~ 426 (464)
T 4g84_A 365 TETQVLVASAQKKL-LEERLKLVSELWDAGIKAELLYK--KNPKLLNQLQYCEEAGIPLVAIIGE 426 (464)
T ss_dssp CCCCEEEECSSSSC-HHHHHHHHHHHHHTTCCEECCSC--SSCCHHHHHHHHHHHTCCEEEECCH
T ss_pred ccceEEEEeCCHHH-HHHHHHHHHHHHHCCCcEEEEeC--CCCCHHHHHHHHHHCCCCEEEEECc
Confidence 45789998766553 34567899999999999966532 2234544555554433334555543
No 42
>2i4r_A V-type ATP synthase subunit F; NESG, GR52A, ATP synthesis, hydrolase, structural genomics, protein structure initiative; 2.80A {Archaeoglobus fulgidus} SCOP: c.149.1.1
Probab=24.31 E-value=52 Score=21.86 Aligned_cols=42 Identities=14% Similarity=0.298 Sum_probs=29.1
Q ss_pred HHhcCCeeeee-cCCCCCCCcchHHHHHhhhhCceEEEEeecCCcC
Q 040920 38 ALCRKKIETFI-DDKLNRGNEISPSLSSAIEGSKISIVIFSKGYAS 82 (163)
Q Consensus 38 ~L~~~gi~~f~-D~~~~~G~~i~~~i~~aI~~S~~~IvvlS~~y~~ 82 (163)
-+.-.|+..+. ..+ -+.+.+.+.+.+++.++.|++++++.+.
T Consensus 23 GFrLaGi~~~~~~~~---~ee~~~~~~~l~~~~digIIlIte~ia~ 65 (102)
T 2i4r_A 23 GFMLAGISDIYEVTS---DEEIVKAVEDVLKRDDVGVVIMKQEYLK 65 (102)
T ss_dssp HHHHTTCCCEEECCS---HHHHHHHHHHHHHCSSEEEEEEEGGGST
T ss_pred HHHHcCCCcccCCCC---HHHHHHHHHHHhhCCCeEEEEEeHHHHH
Confidence 44456777665 221 2345566777777789999999999886
No 43
>2cof_A Protein KIAA1914; PH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=23.53 E-value=52 Score=21.00 Aligned_cols=19 Identities=5% Similarity=0.146 Sum_probs=15.5
Q ss_pred hChHHHHHHHHHHHHhhcc
Q 040920 136 EKIDMLQTWRIAMREAANL 154 (163)
Q Consensus 136 ~~~e~~~~W~~aL~~v~~~ 154 (163)
.+.+..++|..||..++..
T Consensus 84 ~s~~e~~~Wi~al~~~~~~ 102 (107)
T 2cof_A 84 KSSEEMGHWLGLLLSESGS 102 (107)
T ss_dssp SSHHHHHHHHHHHHHHSSC
T ss_pred CCHHHHHHHHHHHHHHHcC
Confidence 3578889999999988764
No 44
>2d9v_A Pleckstrin homology domain-containing protein family B member 1; PH domain, phret1, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=22.90 E-value=57 Score=21.80 Aligned_cols=22 Identities=27% Similarity=0.345 Sum_probs=17.6
Q ss_pred hChHHHHHHHHHHHHhhcccCc
Q 040920 136 EKIDMLQTWRIAMREAANLSGF 157 (163)
Q Consensus 136 ~~~e~~~~W~~aL~~v~~~~G~ 157 (163)
++++..+.|..||..+...+..
T Consensus 97 ~s~~e~~~Wi~al~~a~~~~~~ 118 (130)
T 2d9v_A 97 ETRDDAIAWKTALMEANSTPAP 118 (130)
T ss_dssp SSHHHHHHHHHHHHHHHTCCCC
T ss_pred CCHHHHHHHHHHHHHHHcCCCC
Confidence 3578889999999999876543
No 45
>4g85_A Histidine-tRNA ligase, cytoplasmic; synthetase; 3.11A {Homo sapiens}
Probab=22.69 E-value=1.6e+02 Score=24.74 Aligned_cols=62 Identities=15% Similarity=0.090 Sum_probs=38.5
Q ss_pred ceeeEEEeccccccccchHHHHHHHHhcCCeeeeecCCCCCCCcchHHHHHhhhhCceEEEEeec
Q 040920 14 IKYDVFLSFRGKDVRHNFISHLNAALCRKKIETFIDDKLNRGNEISPSLSSAIEGSKISIVIFSK 78 (163)
Q Consensus 14 ~~ydVFISy~~~D~~~~fv~~L~~~L~~~gi~~f~D~~~~~G~~i~~~i~~aI~~S~~~IvvlS~ 78 (163)
..+||||..-+++. ...+-.|...|.+.||++-+|.. .+..+..++..|=+.---.++|+-+
T Consensus 418 ~~~~V~v~~~~~~~-~~~a~~l~~~Lr~~Gi~ve~~~~--~~~~l~~q~k~A~~~g~~~~viiG~ 479 (517)
T 4g85_A 418 TETQVLVASAQKKL-LEERLKLVSELWDAGIKAELLYK--KNPKLLNQLQYCEEAGIPLVAIIGE 479 (517)
T ss_dssp CCCCEEEEESSSSC-HHHHHHHHHHHHHTTCCEEECSS--SSCCHHHHHHHHHHHCCCEEEEECH
T ss_pred CCCEEEEEeCCHHH-HHHHHHHHHHHHHCCCcEEEEeC--CCCCHHHHHHHHHHCCCCEEEEECC
Confidence 45899987655443 34677899999999999966532 2234555555554433334555544
No 46
>2coc_A FYVE, rhogef and PH domain containing protein 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=22.62 E-value=53 Score=21.89 Aligned_cols=18 Identities=22% Similarity=0.455 Sum_probs=15.2
Q ss_pred hChHHHHHHHHHHHHhhc
Q 040920 136 EKIDMLQTWRIAMREAAN 153 (163)
Q Consensus 136 ~~~e~~~~W~~aL~~v~~ 153 (163)
++.+..++|.+||..++.
T Consensus 89 ~s~e~~~~Wl~al~~A~~ 106 (112)
T 2coc_A 89 SSAELQQQWLETLSTAAH 106 (112)
T ss_dssp SSHHHHHHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHHHHHhc
Confidence 468899999999998764
No 47
>2xzd_B Caspase-3; hydrolase-protein binding complex, de novo protein, apoptosi ankyrin repeat protein, ribosome display; 2.10A {Homo sapiens} PDB: 2xzt_B 2y0b_B
Probab=22.51 E-value=21 Score=24.50 Aligned_cols=28 Identities=21% Similarity=0.223 Sum_probs=17.5
Q ss_pred eeeEEEecccc---------ccccchHHHHHHHHhcC
Q 040920 15 KYDVFLSFRGK---------DVRHNFISHLNAALCRK 42 (163)
Q Consensus 15 ~ydVFISy~~~---------D~~~~fv~~L~~~L~~~ 42 (163)
.-|++++|+.. .....|+..|.+.|++.
T Consensus 15 ~aDfLi~yST~pG~vS~R~~~~GSwFIQ~Lc~vl~~~ 51 (118)
T 2xzd_B 15 EADFLYAYSTAPGYYSWRNSKDGSWFIQSLCAMLKQY 51 (118)
T ss_dssp TTTEEEEESSCTTBCCCEETTTEEHHHHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCCEeeEeCCCCCccHHHHHHHHHHh
Confidence 35666666533 22346888888888753
No 48
>3sm9_A Mglur3, metabotropic glutamate receptor 3; structural genomics, structural genomics consortium, SGC, CE membrane, G-protein coupled receptor; HET: Z99; 2.26A {Homo sapiens}
Probab=22.44 E-value=59 Score=26.94 Aligned_cols=59 Identities=12% Similarity=0.126 Sum_probs=33.9
Q ss_pred EEEeccccccccchHHHHHHHHhcCCeeeeecCCCCC--C-CcchHHHHHhhhhCceEEEEe
Q 040920 18 VFLSFRGKDVRHNFISHLNAALCRKKIETFIDDKLNR--G-NEISPSLSSAIEGSKISIVIF 76 (163)
Q Consensus 18 VFISy~~~D~~~~fv~~L~~~L~~~gi~~f~D~~~~~--G-~~i~~~i~~aI~~S~~~Ivvl 76 (163)
|-|=++..|....++..|.+++++.|+.+-....+.. + ..+...+.+.|+.+..-+||+
T Consensus 188 V~ii~~dd~~G~~~~~~~~~~~~~~Gi~v~~~~~i~~~~~~~d~~~~l~~~i~~s~a~vIi~ 249 (479)
T 3sm9_A 188 VSTVASEGDYGETGIEAFEQEARLRNISIATAEKVGRSNIRKSYDSVIRELLQKPNARVVVL 249 (479)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHTTTCEEEEEEEECC--CHHHHHHHHHHHHTCTTCCEEEE
T ss_pred EEEEEecchhhHHHHHHHHHHHHHCCceEEEEEEcCCCCChHHHHHHHHHHHhcCCCeEEEE
Confidence 3343444444456888899999999987755444432 2 233334436677655444443
No 49
>1upq_A PEPP1; PH domain, phosphoinositide binding, signal transduction; 1.48A {Homo sapiens} SCOP: b.55.1.1 PDB: 1upr_A*
Probab=22.02 E-value=55 Score=21.16 Aligned_cols=23 Identities=26% Similarity=0.486 Sum_probs=15.5
Q ss_pred hChHHHHHHHHHHHHhhcccCcc
Q 040920 136 EKIDMLQTWRIAMREAANLSGFD 158 (163)
Q Consensus 136 ~~~e~~~~W~~aL~~v~~~~G~~ 158 (163)
.+.+..+.|..||..+....+-.
T Consensus 92 ~s~~e~~~Wi~al~~a~~~~~~~ 114 (123)
T 1upq_A 92 DTLEDLRGWLRALGRASRAEGDD 114 (123)
T ss_dssp SSHHHHHHHHHHHHHHHC-----
T ss_pred CCHHHHHHHHHHHHHHHhcccCC
Confidence 35788899999999998766543
No 50
>1qe0_A Histidyl-tRNA synthetase; class II tRNA synthetase, beta sheet, ligase; 2.70A {Staphylococcus aureus} SCOP: c.51.1.1 d.104.1.1
Probab=21.88 E-value=90 Score=25.29 Aligned_cols=61 Identities=15% Similarity=0.148 Sum_probs=38.2
Q ss_pred ceeeEEEeccccccccchHHHHHHHHhcCCeeeeecCCCCCCCcchHHHHHhhhhCceEEEEeec
Q 040920 14 IKYDVFLSFRGKDVRHNFISHLNAALCRKKIETFIDDKLNRGNEISPSLSSAIEGSKISIVIFSK 78 (163)
Q Consensus 14 ~~ydVFISy~~~D~~~~fv~~L~~~L~~~gi~~f~D~~~~~G~~i~~~i~~aI~~S~~~IvvlS~ 78 (163)
..++|+|-.-+++. ...+..|...|.+.|+.|-+|.. +..+...+..|-..---.++|+.+
T Consensus 328 ~p~~v~i~~~~~~~-~~~a~~l~~~Lr~~Gi~v~~d~~---~~~~~~~~~~a~~~g~p~~iiig~ 388 (420)
T 1qe0_A 328 ENLDLFIVTMGDQA-DRYAVKLLNHLRHNGIKADKDYL---QRKIKGQMKQADRLGAKFTIVIGD 388 (420)
T ss_dssp CCCSEEEEECHHHH-HHHHHHHHHHHHTTTCCEEECCS---CCCHHHHHHHHHHTTCSEEEEECH
T ss_pred CCCeEEEEEeCHHH-HHHHHHHHHHHHHCCCEEEEecC---CCCHHHHHHHHHHcCCCEEEEECc
Confidence 34788876544332 35678899999999999988763 234444555544433335555554
No 51
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=21.79 E-value=1.9e+02 Score=19.36 Aligned_cols=61 Identities=15% Similarity=0.188 Sum_probs=33.0
Q ss_pred CCCc-chHHHHHhhhhCceEEEEeecCCcCchhhHHHHHHHHHhhhhcCceeEeEEEecCCcccc
Q 040920 54 RGNE-ISPSLSSAIEGSKISIVIFSKGYASSRLCLNELVKILESKNKYGQIVVPVFYLVDPSDVR 117 (163)
Q Consensus 54 ~G~~-i~~~i~~aI~~S~~~IvvlS~~y~~S~wC~~El~~~~~~~~~~~~~viPVfy~v~p~~v~ 117 (163)
+|.. +.......+..++.+|+|++.+ +.....++...++........-+|+++-....|+.
T Consensus 69 ~G~~~~~~~~~~~~~~~d~~i~v~d~~---~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~ 130 (181)
T 2efe_B 69 AGQERYHSLAPMYYRGAAAAIIVFDVT---NQASFERAKKWVQELQAQGNPNMVMALAGNKSDLL 130 (181)
T ss_dssp CCSGGGGGGTHHHHTTCSEEEEEEETT---CHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCT
T ss_pred CCChhhhhhhHHHhccCCEEEEEEECC---CHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCccc
Confidence 5643 3344556788899999999854 33344444444443322222234555544555554
No 52
>4a8j_B Elongator complex protein 5; transcription; 2.10A {Saccharomyces cerevisiae} PDB: 4ejs_B
Probab=21.63 E-value=1.7e+02 Score=23.05 Aligned_cols=43 Identities=16% Similarity=0.123 Sum_probs=30.6
Q ss_pred ceEEEEeecCCcCchhhHHHHHHHHHhhhhcCceeEeEEEecCCccc
Q 040920 70 KISIVIFSKGYASSRLCLNELVKILESKNKYGQIVVPVFYLVDPSDV 116 (163)
Q Consensus 70 ~~~IvvlS~~y~~S~wC~~El~~~~~~~~~~~~~viPVfy~v~p~~v 116 (163)
+..|+|=|=||..+ .+|...+...-.-.-.++-||+..-|..-
T Consensus 101 k~LVIIDSLN~l~~----~~L~~FlsSi~sP~~sLv~vYH~DvP~~~ 143 (270)
T 4a8j_B 101 KHMVIIDSLNYIST----EYITRFLSEIASPHCTMVATYHKDIKDEN 143 (270)
T ss_dssp CEEEEESCGGGSCG----GGHHHHHHHHCCTTEEEEEEEETTSCCC-
T ss_pred ceEEEEecCcchhh----hhHHHHHHHhhcCCcEEEEEecCCCCCCC
Confidence 67889999999997 56777766554445678888886555543
No 53
>3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A*
Probab=21.46 E-value=1.8e+02 Score=25.90 Aligned_cols=69 Identities=17% Similarity=0.180 Sum_probs=43.5
Q ss_pred chHHHHHHHHhcCCeeeeecCCCCCCCcchHHHHHhhhhCceEEEEeecCCcCchhhHHHHHHHHHhhhhcCceeEeEEE
Q 040920 30 NFISHLNAALCRKKIETFIDDKLNRGNEISPSLSSAIEGSKISIVIFSKGYASSRLCLNELVKILESKNKYGQIVVPVFY 109 (163)
Q Consensus 30 ~fv~~L~~~L~~~gi~~f~D~~~~~G~~i~~~i~~aI~~S~~~IvvlS~~y~~S~wC~~El~~~~~~~~~~~~~viPVfy 109 (163)
..+..|..+|+++|+.|..-. +..+.+.-.-.++++..+|+|-+-. ..++...++. .+.=||||.
T Consensus 17 ~~i~~L~~~Le~~g~~V~~a~------s~~Da~~~i~~~~~i~avIld~d~~-----~~~ll~~Ir~----~~~~iPVFl 81 (715)
T 3n75_A 17 EPIRELHRALERLNFQIVYPN------DRDDLLKLIENNARLCGVIFDWDKY-----NLELCEEISK----MNENLPLYA 81 (715)
T ss_dssp HHHHHHHHHHHHTTCEEECCS------SHHHHHHHHHHCTTEEEEEEEHHHH-----HHHHHHHHHH----HCTTCEEEE
T ss_pred HHHHHHHHHHHHCCcEEEEeC------CHHHHHHHHHhCCCceEEEEecccc-----HHHHHHHHHH----hCCCCCEEE
Confidence 467889999999999986533 2333333333567899999986642 2344443332 235689998
Q ss_pred ecCC
Q 040920 110 LVDP 113 (163)
Q Consensus 110 ~v~p 113 (163)
-.+.
T Consensus 82 ~~~~ 85 (715)
T 3n75_A 82 FANT 85 (715)
T ss_dssp ECCT
T ss_pred EecC
Confidence 5444
No 54
>3czp_A Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2, structural protein structure initiative, midwest center for structural genomics; HET: MSE; 2.00A {Pseudomonas aeruginosa PAO1}
Probab=21.38 E-value=1.2e+02 Score=25.85 Aligned_cols=101 Identities=12% Similarity=0.091 Sum_probs=60.5
Q ss_pred eeEEEeccccccc--cchHHHHHHHHhcCCeeeeecCC---CCCCCcchHHHHHhhhhCceEEEEeecCCcCch------
Q 040920 16 YDVFLSFRGKDVR--HNFISHLNAALCRKKIETFIDDK---LNRGNEISPSLSSAIEGSKISIVIFSKGYASSR------ 84 (163)
Q Consensus 16 ydVFISy~~~D~~--~~fv~~L~~~L~~~gi~~f~D~~---~~~G~~i~~~i~~aI~~S~~~IvvlS~~y~~S~------ 84 (163)
.-|+|-|-|-|.. .+-+.+|...|.-+|++|..-.. -+.+..+.....+.+-. +--|+|+-+.+-+..
T Consensus 42 ~~vlIvfEG~D~AGKg~~Ik~l~~~l~prg~~V~a~~~Pt~~E~~~~yl~R~~~~lP~-~G~IvIfdRSwYs~~~v~rv~ 120 (500)
T 3czp_A 42 FPVIILINGIEGAGKGETVKLLNEWMDPRLIEVQSFLRPSDEELERPPQWRFWRRLPP-KGRTGIFFGNWYSQMLYARVE 120 (500)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHSCGGGEEEEECSSCCHHHHTSCTTHHHHHHCCC-TTCEEEEESCHHHHHHHHHHT
T ss_pred CCEEEEEeCcCCCCHHHHHHHHHHhcCccCCeEEEeCCCChhhccCChhhhHHHhCCC-CCeEEEEeCchhhHHHHHHHh
Confidence 5589999877753 46889999999999998865221 23344444444444444 345566666643322
Q ss_pred -hhHH-HHHHHHH------h-hhhcCceeEeEEEecCCcccc
Q 040920 85 -LCLN-ELVKILE------S-KNKYGQIVVPVFYLVDPSDVR 117 (163)
Q Consensus 85 -wC~~-El~~~~~------~-~~~~~~~viPVfy~v~p~~v~ 117 (163)
.|-. |....++ . ....+-.++-+|+++++..-+
T Consensus 121 g~~~~~~~~~~~~~i~~FE~~L~~~g~~i~KffL~is~eeq~ 162 (500)
T 3czp_A 121 GHIKEAKLDQAIDAAERFERMLCDEGALLFKFWFHLSKKQLK 162 (500)
T ss_dssp TSSCHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHhcCCCeEEEEEEECCHHHHH
Confidence 3432 2222222 1 224567888888898887644
No 55
>2i5f_A Pleckstrin; PH domain, protein-inositol phosphate complex, lipid binding protein; HET: 5IP; 1.35A {Homo sapiens} SCOP: b.55.1.1 PDB: 2i5c_A* 1zm0_A
Probab=21.13 E-value=60 Score=20.38 Aligned_cols=17 Identities=18% Similarity=0.223 Sum_probs=14.1
Q ss_pred hChHHHHHHHHHHHHhh
Q 040920 136 EKIDMLQTWRIAMREAA 152 (163)
Q Consensus 136 ~~~e~~~~W~~aL~~v~ 152 (163)
.+.+..+.|..||..++
T Consensus 92 ~s~~e~~~Wi~ai~~~~ 108 (109)
T 2i5f_A 92 ATPKERTEWIKAIQMAS 108 (109)
T ss_dssp SSHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHh
Confidence 35788899999999876
No 56
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=21.01 E-value=2.1e+02 Score=19.65 Aligned_cols=62 Identities=11% Similarity=0.176 Sum_probs=33.5
Q ss_pred CCC-cchHHHHHhhhhCceEEEEeecCCcCchhhHHHHHHHHHhhhhcCceeEeEEEecCCccccc
Q 040920 54 RGN-EISPSLSSAIEGSKISIVIFSKGYASSRLCLNELVKILESKNKYGQIVVPVFYLVDPSDVRN 118 (163)
Q Consensus 54 ~G~-~i~~~i~~aI~~S~~~IvvlS~~y~~S~wC~~El~~~~~~~~~~~~~viPVfy~v~p~~v~~ 118 (163)
+|. .+.......+..++.+|+|++-+-.. ...++...++........-+|+++-....|+.+
T Consensus 80 ~G~~~~~~~~~~~~~~~d~iilV~d~~~~~---s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~ 142 (192)
T 2fg5_A 80 AGQERFHSLAPMYYRGSAAAVIVYDITKQD---SFYTLKKWVKELKEHGPENIVMAIAGNKCDLSD 142 (192)
T ss_dssp CCSGGGGGGTHHHHTTCSEEEEEEETTCTH---HHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGG
T ss_pred CCchhhHhhhHHhhccCCEEEEEEeCCCHH---HHHHHHHHHHHHHHhCCCCCcEEEEEECccccc
Confidence 554 33444566788999999999865433 334444433332222222245555555666543
No 57
>2wem_A Glutaredoxin-related protein 5; chromosome 14 open reading frame 87, Fe/S cluster, oxidoreductase, thioredoxin family, GLRX5, FLB4739, C14ORF87; HET: GTT; 2.40A {Homo sapiens} PDB: 2wul_A*
Probab=20.35 E-value=80 Score=21.15 Aligned_cols=29 Identities=24% Similarity=0.484 Sum_probs=14.2
Q ss_pred CcchHHHHHhhhhCceEEEEeecCCcCchhh
Q 040920 56 NEISPSLSSAIEGSKISIVIFSKGYASSRLC 86 (163)
Q Consensus 56 ~~i~~~i~~aI~~S~~~IvvlS~~y~~S~wC 86 (163)
......+.+.|...++ +|+|+....-+||
T Consensus 7 ~~~~~~v~~~i~~~~V--vvfsk~t~~~p~C 35 (118)
T 2wem_A 7 GGSAEQLDALVKKDKV--VVFLKGTPEQPQC 35 (118)
T ss_dssp --CHHHHHHHHHHSSE--EEEESBCSSSBSS
T ss_pred ccHHHHHHHHhccCCE--EEEEecCCCCCcc
Confidence 3445566666666654 4455544333344
Done!