BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 040922
         (525 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2R1F|A Chain A, Crystal Structure Of Predicted Aminodeoxychorismate Lyase
           From Escherichia Coli
 pdb|2R1F|B Chain B, Crystal Structure Of Predicted Aminodeoxychorismate Lyase
           From Escherichia Coli
          Length = 270

 Score = 31.6 bits (70), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 3/51 (5%)

Query: 264 VYMHFSEVGSDLAKNQTREMYIYFNGEKWHGPLSPSHLETVTVYTTSAMTN 314
           V+++   +G  L   QT    IY  GE+++G LS + LET T Y T  +T 
Sbjct: 161 VFINRLRIGXRL---QTDPTVIYGXGERYNGKLSRADLETPTAYNTYTITG 208


>pdb|2W1W|A Chain A, Native Structure Of A Family 35 Carbohydrate Binding
           Module From Clostridium Thermocellum
 pdb|2W1W|B Chain B, Native Structure Of A Family 35 Carbohydrate Binding
           Module From Clostridium Thermocellum
          Length = 146

 Score = 28.9 bits (63), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 23/75 (30%), Positives = 33/75 (44%), Gaps = 9/75 (12%)

Query: 121 VQLQDSDGIITKEIIHMPNKGYIHVCLVHTYSGTPFISALELRP-ITNSIYATQSGSLSR 179
           V  Q  D II   I+   N GY   C V+ ++        E+   I  ++ A  SGS + 
Sbjct: 5   VIYQAEDAIIYNAILETVNAGYTGSCYVNYHN--------EVGGYIEWNVNAPSSGSYAL 56

Query: 180 YFRWDVGSTTNETFR 194
            FR+  G+T N   R
Sbjct: 57  IFRYANGTTANRPMR 71


>pdb|2W47|A Chain A, Clostridium Thermocellum Cbm35 In Complex With Delta-4,5-
           Anhydrogalacturonic Acid
          Length = 144

 Score = 28.9 bits (63), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 23/75 (30%), Positives = 33/75 (44%), Gaps = 9/75 (12%)

Query: 121 VQLQDSDGIITKEIIHMPNKGYIHVCLVHTYSGTPFISALELRP-ITNSIYATQSGSLSR 179
           V  Q  D II   I+   N GY   C V+ ++        E+   I  ++ A  SGS + 
Sbjct: 5   VIYQAEDAIIYNAILETVNAGYTGSCYVNYHN--------EVGGYIEWNVNAPSSGSYAL 56

Query: 180 YFRWDVGSTTNETFR 194
            FR+  G+T N   R
Sbjct: 57  IFRYANGTTANRPMR 71


>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
           Ectodomain
 pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
           Brassinolide
          Length = 772

 Score = 28.5 bits (62), Expect = 9.0,   Method: Compositional matrix adjust.
 Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 3/54 (5%)

Query: 420 TSIESLDLSNNSLTGLVPDFLAELESLTVXXXXXXXXXXXXPAGLVEKANNRSL 473
           T++  + LSNN LTG +P ++  LE+L +            PA   E  + RSL
Sbjct: 487 TNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPA---ELGDCRSL 537


>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
 pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
          Length = 768

 Score = 28.5 bits (62), Expect = 9.7,   Method: Compositional matrix adjust.
 Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 3/54 (5%)

Query: 420 TSIESLDLSNNSLTGLVPDFLAELESLTVXXXXXXXXXXXXPAGLVEKANNRSL 473
           T++  + LSNN LTG +P ++  LE+L +            PA   E  + RSL
Sbjct: 490 TNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPA---ELGDCRSL 540


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.318    0.134    0.409 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,197,936
Number of Sequences: 62578
Number of extensions: 620447
Number of successful extensions: 1350
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1317
Number of HSP's gapped (non-prelim): 37
length of query: 525
length of database: 14,973,337
effective HSP length: 103
effective length of query: 422
effective length of database: 8,527,803
effective search space: 3598732866
effective search space used: 3598732866
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)