Query 040922
Match_columns 525
No_of_seqs 344 out of 3059
Neff 8.0
Searched_HMMs 46136
Date Fri Mar 29 13:08:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040922.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040922hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03150 hypothetical protein; 100.0 4.5E-87 9.7E-92 736.4 47.7 494 2-507 13-556 (623)
2 PF12819 Malectin_like: Carboh 100.0 3E-73 6.5E-78 584.5 32.3 323 17-342 1-347 (347)
3 PLN03150 hypothetical protein; 99.8 4.4E-17 9.5E-22 180.6 25.4 152 15-167 194-364 (623)
4 PLN00113 leucine-rich repeat r 99.2 3.1E-11 6.7E-16 141.4 10.1 83 394-476 497-579 (968)
5 PF11721 Malectin: Di-glucose 99.0 1E-09 2.2E-14 102.3 9.2 139 15-160 3-174 (174)
6 PLN00113 leucine-rich repeat r 98.9 6.7E-09 1.4E-13 121.9 11.0 119 350-475 26-171 (968)
7 PF11721 Malectin: Di-glucose 98.9 1.7E-09 3.7E-14 100.8 4.6 107 180-298 2-121 (174)
8 KOG0444 Cytoskeletal regulator 98.8 2.1E-09 4.6E-14 113.3 2.2 152 315-484 32-187 (1255)
9 PF13855 LRR_8: Leucine rich r 98.6 2.8E-08 6.2E-13 75.7 2.5 61 396-456 1-61 (61)
10 KOG0617 Ras suppressor protein 98.5 1.6E-08 3.4E-13 91.5 -1.5 82 395-479 32-113 (264)
11 PF12819 Malectin_like: Carboh 98.4 1.6E-06 3.5E-11 89.7 12.3 149 14-165 180-347 (347)
12 KOG4237 Extracellular matrix p 98.3 1.5E-07 3.3E-12 95.1 1.4 91 394-486 272-362 (498)
13 KOG0472 Leucine-rich repeat pr 98.3 2.2E-07 4.7E-12 94.1 1.3 140 322-482 167-309 (565)
14 KOG0617 Ras suppressor protein 98.2 1.5E-07 3.2E-12 85.3 -2.5 69 397-468 128-196 (264)
15 KOG0472 Leucine-rich repeat pr 98.2 1.5E-06 3.2E-11 88.2 4.2 84 396-483 435-541 (565)
16 KOG4237 Extracellular matrix p 98.1 4.3E-07 9.3E-12 91.9 -0.1 96 386-486 51-154 (498)
17 PF13855 LRR_8: Leucine rich r 98.1 1.7E-06 3.7E-11 65.8 2.3 60 420-481 1-60 (61)
18 KOG4194 Membrane glycoprotein 98.0 2.7E-06 5.8E-11 90.0 2.6 89 395-486 364-455 (873)
19 PF14580 LRR_9: Leucine-rich r 97.9 1.2E-05 2.6E-10 74.8 4.5 82 395-482 41-125 (175)
20 KOG4194 Membrane glycoprotein 97.7 1.6E-05 3.5E-10 84.3 2.4 82 395-476 292-373 (873)
21 PF14580 LRR_9: Leucine-rich r 97.7 3.7E-05 7.9E-10 71.5 3.9 80 395-481 18-99 (175)
22 KOG0618 Serine/threonine phosp 97.7 1.7E-05 3.6E-10 88.2 1.8 83 396-483 383-489 (1081)
23 PF12799 LRR_4: Leucine Rich r 97.7 4.4E-05 9.5E-10 54.1 3.3 36 421-457 2-37 (44)
24 KOG0618 Serine/threonine phosp 97.6 1.7E-05 3.7E-10 88.1 0.6 80 396-478 430-510 (1081)
25 KOG0444 Cytoskeletal regulator 97.6 1.3E-05 2.9E-10 85.4 -0.2 151 327-485 211-377 (1255)
26 KOG1259 Nischarin, modulator o 97.4 4.7E-05 1E-09 74.9 1.2 76 395-475 306-381 (490)
27 PF12799 LRR_4: Leucine Rich r 97.4 0.00011 2.5E-09 51.9 2.8 37 396-433 1-37 (44)
28 PRK15387 E3 ubiquitin-protein 97.3 0.00021 4.6E-09 80.7 5.3 78 396-484 382-459 (788)
29 KOG4579 Leucine-rich repeat (L 97.3 4.6E-05 1E-09 66.9 -0.9 70 397-469 54-124 (177)
30 KOG0532 Leucine-rich repeat (L 97.0 0.00023 4.9E-09 75.6 0.8 96 394-495 164-260 (722)
31 PRK15387 E3 ubiquitin-protein 96.8 0.00066 1.4E-08 76.8 2.8 68 395-467 401-468 (788)
32 KOG4658 Apoptotic ATPase [Sign 96.7 0.0013 2.9E-08 75.7 4.0 84 395-479 570-653 (889)
33 PLN03210 Resistant to P. syrin 96.6 0.0038 8.2E-08 74.9 7.7 79 395-475 633-711 (1153)
34 cd00116 LRR_RI Leucine-rich re 96.6 0.0013 2.8E-08 66.7 2.9 81 396-476 165-258 (319)
35 KOG4579 Leucine-rich repeat (L 96.5 0.00025 5.4E-09 62.5 -2.3 85 395-484 76-160 (177)
36 cd00116 LRR_RI Leucine-rich re 96.5 0.0015 3.4E-08 66.1 2.5 81 396-476 108-201 (319)
37 KOG1859 Leucine-rich repeat pr 96.4 0.00047 1E-08 75.1 -1.5 85 395-484 186-293 (1096)
38 PRK15370 E3 ubiquitin-protein 96.4 0.0049 1.1E-07 70.0 6.3 70 397-475 221-290 (754)
39 PRK15370 E3 ubiquitin-protein 96.4 0.0024 5.3E-08 72.4 3.9 80 396-484 346-429 (754)
40 COG4886 Leucine-rich repeat (L 96.3 0.0014 3E-08 69.0 1.4 64 397-463 141-204 (394)
41 KOG1259 Nischarin, modulator o 96.3 0.0013 2.9E-08 64.9 1.1 73 398-474 286-358 (490)
42 PLN03210 Resistant to P. syrin 96.3 0.0066 1.4E-07 72.9 6.8 67 395-462 656-722 (1153)
43 COG4886 Leucine-rich repeat (L 96.2 0.0032 7E-08 66.2 3.0 78 396-476 116-194 (394)
44 KOG4658 Apoptotic ATPase [Sign 96.1 0.003 6.5E-08 72.9 2.6 84 396-480 545-630 (889)
45 KOG0532 Leucine-rich repeat (L 95.8 0.0016 3.4E-08 69.5 -1.3 79 397-481 144-222 (722)
46 KOG1859 Leucine-rich repeat pr 94.9 0.0037 8E-08 68.5 -2.2 62 397-462 165-226 (1096)
47 PF08263 LRRNT_2: Leucine rich 94.5 0.026 5.7E-07 39.5 2.2 33 352-389 2-43 (43)
48 KOG1644 U2-associated snRNP A' 94.3 0.064 1.4E-06 50.5 4.6 81 396-481 42-124 (233)
49 KOG2739 Leucine-rich acidic nu 94.2 0.032 6.9E-07 54.4 2.7 77 396-476 43-124 (260)
50 PF00560 LRR_1: Leucine Rich R 93.9 0.022 4.8E-07 33.7 0.6 11 423-433 3-13 (22)
51 PF00560 LRR_1: Leucine Rich R 93.8 0.017 3.7E-07 34.2 0.0 21 445-466 1-21 (22)
52 KOG0531 Protein phosphatase 1, 93.2 0.041 8.8E-07 58.5 1.7 79 395-478 94-172 (414)
53 PF08693 SKG6: Transmembrane a 92.2 0.22 4.7E-06 34.1 3.5 22 493-514 10-31 (40)
54 PF04478 Mid2: Mid2 like cell 92.1 0.14 3.1E-06 45.8 3.3 33 492-524 46-79 (154)
55 KOG2982 Uncharacterized conser 92.0 0.051 1.1E-06 54.0 0.4 73 383-457 86-159 (418)
56 KOG2739 Leucine-rich acidic nu 90.8 0.16 3.4E-06 49.7 2.4 62 395-458 64-130 (260)
57 KOG0473 Leucine-rich repeat pr 90.8 0.0086 1.9E-07 57.4 -6.0 81 396-481 42-122 (326)
58 PF13504 LRR_7: Leucine rich r 90.3 0.16 3.5E-06 28.0 1.2 13 445-457 2-14 (17)
59 KOG0531 Protein phosphatase 1, 89.9 0.12 2.5E-06 55.1 0.7 80 396-481 72-151 (414)
60 smart00369 LRR_TYP Leucine-ric 89.6 0.36 7.7E-06 29.6 2.5 21 443-464 1-21 (26)
61 smart00370 LRR Leucine-rich re 89.6 0.36 7.7E-06 29.6 2.5 21 443-464 1-21 (26)
62 KOG1644 U2-associated snRNP A' 89.2 0.38 8.3E-06 45.4 3.5 80 395-475 63-147 (233)
63 KOG3665 ZYG-1-like serine/thre 88.8 0.26 5.7E-06 55.7 2.6 61 395-457 172-233 (699)
64 KOG3207 Beta-tubulin folding c 88.5 0.36 7.8E-06 50.5 3.0 63 394-457 244-314 (505)
65 KOG3207 Beta-tubulin folding c 88.4 0.1 2.2E-06 54.4 -1.0 83 396-481 222-312 (505)
66 PF01299 Lamp: Lysosome-associ 86.3 0.78 1.7E-05 46.7 4.0 48 476-524 252-299 (306)
67 KOG2982 Uncharacterized conser 86.2 0.32 7E-06 48.5 1.1 81 396-476 71-154 (418)
68 PF15102 TMEM154: TMEM154 prot 85.0 1.1 2.4E-05 39.9 3.8 28 496-523 57-85 (146)
69 TIGR00864 PCC polycystin catio 82.3 1 2.2E-05 57.1 3.3 34 450-486 1-35 (2740)
70 smart00370 LRR Leucine-rich re 82.0 1.3 2.8E-05 27.0 2.2 17 419-435 1-17 (26)
71 smart00369 LRR_TYP Leucine-ric 82.0 1.3 2.8E-05 27.0 2.2 17 419-435 1-17 (26)
72 KOG3665 ZYG-1-like serine/thre 81.2 0.64 1.4E-05 52.7 1.0 89 394-484 146-236 (699)
73 KOG2123 Uncharacterized conser 80.2 0.14 3E-06 50.6 -4.1 66 395-462 40-106 (388)
74 PRK15386 type III secretion pr 79.4 1.9 4.1E-05 45.6 3.6 64 394-467 70-137 (426)
75 PTZ00382 Variant-specific surf 78.4 2.4 5.2E-05 35.3 3.3 27 497-523 68-95 (96)
76 PRK15386 type III secretion pr 77.8 3.6 7.9E-05 43.5 5.2 39 394-439 92-133 (426)
77 KOG2123 Uncharacterized conser 72.8 0.5 1.1E-05 46.8 -2.4 78 397-481 20-99 (388)
78 PF13516 LRR_6: Leucine Rich r 72.4 0.74 1.6E-05 27.6 -0.9 14 444-457 2-15 (24)
79 KOG0473 Leucine-rich repeat pr 69.8 0.26 5.7E-06 47.5 -5.0 62 394-457 63-124 (326)
80 smart00364 LRR_BAC Leucine-ric 68.9 3.3 7.2E-05 25.6 1.4 18 444-462 2-19 (26)
81 PF01034 Syndecan: Syndecan do 67.9 1.8 3.9E-05 32.9 0.1 15 496-510 10-24 (64)
82 KOG3763 mRNA export factor TAP 66.9 3 6.6E-05 45.0 1.6 14 396-409 218-231 (585)
83 PF01102 Glycophorin_A: Glycop 65.9 2.7 5.9E-05 36.5 0.9 9 516-524 85-93 (122)
84 PF08374 Protocadherin: Protoc 62.6 6.2 0.00013 37.5 2.6 26 493-518 36-61 (221)
85 PF14610 DUF4448: Protein of u 60.1 9 0.00019 36.0 3.3 29 496-524 158-186 (189)
86 PF13306 LRR_5: Leucine rich r 59.2 14 0.00031 31.4 4.3 54 397-452 13-66 (129)
87 smart00365 LRR_SD22 Leucine-ri 56.9 9.5 0.00021 23.6 1.9 15 443-457 1-15 (26)
88 PF02439 Adeno_E3_CR2: Adenovi 55.3 5.8 0.00012 26.8 0.8 16 498-513 6-21 (38)
89 KOG1909 Ran GTPase-activating 54.1 14 0.0003 38.0 3.6 62 396-457 92-170 (382)
90 PF06024 DUF912: Nucleopolyhed 53.3 3.9 8.4E-05 34.4 -0.4 9 516-524 83-91 (101)
91 COG5238 RNA1 Ran GTPase-activa 52.9 9 0.0002 38.1 2.0 38 396-433 92-133 (388)
92 PF13306 LRR_5: Leucine rich r 52.8 14 0.0003 31.5 3.1 75 396-474 35-109 (129)
93 smart00368 LRR_RI Leucine rich 49.7 14 0.0003 23.1 1.9 14 444-457 2-15 (28)
94 COG5238 RNA1 Ran GTPase-activa 48.0 50 0.0011 33.1 6.3 38 420-457 157-198 (388)
95 PTZ00046 rifin; Provisional 47.7 4.5 9.8E-05 41.6 -0.9 28 496-524 317-344 (358)
96 TIGR01477 RIFIN variant surfac 47.5 4.6 9.9E-05 41.4 -0.9 28 496-524 312-339 (353)
97 TIGR01478 STEVOR variant surfa 46.9 7.4 0.00016 38.6 0.4 14 502-515 265-278 (295)
98 PTZ00370 STEVOR; Provisional 46.5 7.5 0.00016 38.6 0.4 14 502-515 261-274 (296)
99 KOG3593 Predicted receptor-lik 46.4 7.8 0.00017 38.5 0.5 121 161-297 39-167 (355)
100 KOG2120 SCF ubiquitin ligase, 44.9 3.2 6.9E-05 41.7 -2.4 56 397-452 186-242 (419)
101 PF11857 DUF3377: Domain of un 42.6 39 0.00085 26.5 3.7 17 497-513 31-47 (74)
102 PF12877 DUF3827: Domain of un 42.2 18 0.00038 40.0 2.4 24 496-519 271-294 (684)
103 KOG1909 Ran GTPase-activating 42.0 15 0.00032 37.8 1.7 13 444-456 270-282 (382)
104 PF15345 TMEM51: Transmembrane 40.6 23 0.0005 34.2 2.6 33 491-523 53-85 (233)
105 PHA03099 epidermal growth fact 39.2 21 0.00046 31.0 2.0 29 496-524 101-129 (139)
106 PF08693 SKG6: Transmembrane a 37.3 34 0.00073 23.6 2.3 30 496-525 9-40 (40)
107 PF05393 Hum_adeno_E3A: Human 34.5 27 0.00058 28.3 1.7 17 504-520 40-56 (94)
108 KOG2120 SCF ubiquitin ligase, 32.9 5.4 0.00012 40.2 -3.0 57 420-476 185-242 (419)
109 KOG3864 Uncharacterized conser 32.0 9.4 0.0002 36.3 -1.4 80 397-476 102-184 (221)
110 PF15102 TMEM154: TMEM154 prot 26.2 20 0.00044 32.0 -0.2 30 495-524 60-89 (146)
111 TIGR00864 PCC polycystin catio 25.4 44 0.00096 43.3 2.3 32 402-433 1-32 (2740)
112 KOG3763 mRNA export factor TAP 25.1 38 0.00082 37.0 1.5 67 418-485 216-284 (585)
113 PF04862 DUF642: Protein of un 22.6 5.8E+02 0.013 23.1 10.3 79 79-162 72-158 (159)
114 PF12768 Rax2: Cortical protei 22.5 57 0.0012 32.8 2.1 28 496-523 230-257 (281)
115 PF03302 VSP: Giardia variant- 22.3 82 0.0018 33.3 3.3 28 496-523 368-396 (397)
116 PF08374 Protocadherin: Protoc 21.1 36 0.00079 32.4 0.4 29 493-521 33-61 (221)
117 PF02430 AMA-1: Apical membran 20.4 45 0.00098 35.4 0.9 12 475-486 379-390 (471)
118 PF07213 DAP10: DAP10 membrane 20.2 48 0.001 26.4 0.8 29 485-513 24-52 (79)
119 PF07204 Orthoreo_P10: Orthore 20.1 34 0.00073 28.1 -0.1 9 514-522 58-66 (98)
No 1
>PLN03150 hypothetical protein; Provisional
Probab=100.00 E-value=4.5e-87 Score=736.40 Aligned_cols=494 Identities=24% Similarity=0.411 Sum_probs=376.8
Q ss_pred cEEEEeecCCCCcEEEccCCCCCCccccCCCCeeeecCCCcccCCceeeecCCCCCccccccceEeeeeC--CCCCceEE
Q 040922 2 LVVTVCRLPLSGFISIDCGIPENASYSDKITGINYVSDATYVDTGVSHSISSGYNNEAVERQFLNLRSFP--EGIRNCYT 79 (525)
Q Consensus 2 ~~~~~~~~~~~~f~sidCG~~~~~~~~d~~~~~~w~~D~~~~~~g~~~~~~~~~~~~~~~~~y~t~R~Fp--~~~~~cY~ 79 (525)
++.+++.+.++++++||||++.+. .+| .+||+|++|..|. .|....++.+ ....++|+|||+|| +|+++||+
T Consensus 13 ~~~~~~~~~~~~~~~I~CGs~~~~-~~d-~~~~~w~~D~~~~-~~~~~~~~~~---~~~~~~~~t~R~F~~~~g~~~cY~ 86 (623)
T PLN03150 13 AVLASLASPEPFTMRISCGARVNV-RTA-PTNTLWYKDFAYT-GGIPANATRP---SFIAPPLKTLRYFPLSDGPENCYN 86 (623)
T ss_pred HhhcccccCCCccEEEeCCCCCCc-ccC-CCCCEEcCCcccc-cCccccccCc---ccccchhhccccCCcccccccceE
Confidence 345567777899999999998642 244 3799999997774 2332222221 12457899999999 57799999
Q ss_pred ecCcCCCcceEEEEEeecCCCCCCCCCCeeEEEeCceEEEEEEe--ccCCCcEEEEEEEecCCCcEEEEEEeCCCCCcee
Q 040922 80 LRPANGDVKFLIRASFMYGNYDGQDMPPSFDLMLGADVWDSVQL--QDSDGIITKEIIHMPNKGYIHVCLVHTYSGTPFI 157 (525)
Q Consensus 80 ~~v~~g~~~yliR~~F~y~nyd~~~~~p~F~v~~~~~~~~~v~~--~~~~~~~~~E~i~~~~~~~l~vcf~~~~~~~pFI 157 (525)
||++++| +||||+||+|||||+.+..|.|||++|++.|.+|+. +..+..++||++++++++.++|||+|+++|+|||
T Consensus 87 ~~~~~~g-~ylVRl~F~~~~y~~~~~~~~Fdv~~~~~~~~tv~~~~~~~~~~v~~E~i~~~~~~~l~vcf~~~~~~~pFI 165 (623)
T PLN03150 87 INRVPKG-HYSVRVFFGLVAEPNFDSEPLFDVSVEGTQISSLKSGWSSHDEQVFAEALVFLTDGSASICFHSTGHGDPAI 165 (623)
T ss_pred eeecCCC-cEEEEEEeecCCcCCCCCCCceEEEECcEEEEEEecCcccCCCcEEEEEEEEecCCcEEEEEecCCCCCCce
Confidence 9998888 999999999999999998899999999999999975 2244568999999999999999999999999999
Q ss_pred EEEEEEEcCCCccccc-----ccceeeEEeeecCCCCC-CCccCCCCCC--CcccccCCC---CCceeeccceeecCCCC
Q 040922 158 SALELRPITNSIYATQ-----SGSLSRYFRWDVGSTTN-ETFRYPDDVY--DRIWSPNSF---YYWAPISTSSNVDSTGT 226 (525)
Q Consensus 158 n~iEl~~lp~~~y~~~-----~~~l~~~~R~n~G~~~~-~~i~~~~D~~--~R~W~~d~~---~~~~~~~~~~~i~~~~~ 226 (525)
|+|||||||+++|..+ +.+|+++||+||||++. ..+||++|+| ||+|.+|.. ..+..+++...|+....
T Consensus 166 s~iEv~~l~~~~y~~~~~~~~~~~L~~~~R~n~G~~~~~~~~d~~~D~~~~dR~W~~d~~~~~~~~~~~st~~~I~~~~~ 245 (623)
T PLN03150 166 LSIEILQVDDKAYNFGPSWGQGVILRTAKRLSCGAGKSKFDEDYSGDHWGGDRFWNRMQTFGSGSDQAISTENVIKKASN 245 (623)
T ss_pred eEEEEEEcCcccccccccccCceEEEEEEEEEecCcccccccCCCCCcccCccccCcCcccCCCcccccccccccccccC
Confidence 9999999999999643 23699999999999653 3589999999 999998854 33556667667775556
Q ss_pred CCCCChHHHHhhccccCCCCeeeEEEEeecCCCceEEEEEEeecccccCCCCceEEEEEEECCeeeccCcccceee---e
Q 040922 227 INFNLPSTVMQTAAIPANGVTSLEFHWVPVNRTFKYYVYMHFSEVGSDLAKNQTREMYIYFNGEKWHGPLSPSHLE---T 303 (525)
Q Consensus 227 ~~~~~P~~V~~TA~~~~~~~~~~~~~w~~v~~~~~y~v~lhF~Ei~~~~~~~~~R~F~I~in~~~~~~~~~p~~~~---~ 303 (525)
++|.+|+.|||||+++.+...++.+.| .++++..|+|||||||+++.....++|+|+|||||+.+.+++++.... .
T Consensus 246 ~~~~~P~~VyqTA~~~~~~~~~lty~~-~v~~~~~Y~VrLhFaEi~~~~~~~~~R~F~V~ing~~~~~~~di~~~~g~~~ 324 (623)
T PLN03150 246 APNFYPESLYQSALVSTDTQPDLSYTM-DVDPNRNYSVWLHFAEIDNSITAEGKRVFDVLINGDTAFKDVDIVKMSGERY 324 (623)
T ss_pred CCccChHHHhhhhccccCCCCceEEEe-ecCCCCCEEEEEEEEeccCccCCCceEEEEEEECCEEeecccChhhhcCCcc
Confidence 789999999999988876443444444 478999999999999998434567899999999999887766653221 1
Q ss_pred eEEEEeeecc-ccceEEEEEeecCCCCchhHhhhhhhccccccCccccchhhHHHHHHhhhhcccCC--CCCCCCCCCcc
Q 040922 304 VTVYTTSAMT-NYSRYDIEIRATDKSSLPPILNALEVYQVKEFPQLLTHQQDVDAITNIKSKYEVKR--DWQGDPCTPKV 380 (525)
Q Consensus 304 ~~~~~~~~~~-~~~~l~l~l~~t~~s~lpp~ln~leil~~~~~~~~~t~~~d~~al~~l~~~~~~~~--~w~g~pc~p~~ 380 (525)
..++.++.+. ..+.+++++.+...+ +|++||+|++++... ...+.+.|+.+|..+|..+.... +|.|+||.|..
T Consensus 325 ~~~~~~~~v~~~~g~l~isl~p~~~s--~pilNaiEI~~~~~~-~~~t~~~~~~aL~~~k~~~~~~~~~~W~g~~C~p~~ 401 (623)
T PLN03150 325 TALVLNKTVAVSGRTLTIVLQPKKGT--HAIINAIEVFEIITA-ESKTLLEEVSALQTLKSSLGLPLRFGWNGDPCVPQQ 401 (623)
T ss_pred cceEEEeEEeecCCeEEEEEeeCCCC--cceeeeeeeeecccc-ccccCchHHHHHHHHHHhcCCcccCCCCCCCCCCcc
Confidence 1233322221 236799999987543 799999999999985 56788999999999998886432 89999999988
Q ss_pred cccccccCCCCCC-------------------------CCCceEEecCCCCCccCCCchhhccCCCcCEEEcCCCCCCCc
Q 040922 381 HLWQGLNCSYDDN-------------------------QPPRIISLNLSSSGISGEIDPYIFSLTSIESLDLSNNSLTGL 435 (525)
Q Consensus 381 ~~w~gv~c~~~~~-------------------------~~~~L~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~g~ 435 (525)
+.|.|+.|..... .+++|+.|+|++|+++|.+|..+..|++|+.|+|++|+++|.
T Consensus 402 ~~w~Gv~C~~~~~~~~~~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~ 481 (623)
T PLN03150 402 HPWSGADCQFDSTKGKWFIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS 481 (623)
T ss_pred cccccceeeccCCCCceEEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCC
Confidence 8999999963211 235677777777777777777777777777777777777777
Q ss_pred CchhccCCCCCCEEeCCCCcCCCCCChhhhcCCCCcEEEEEecCCCCCCCCC---ccCCCC-ceEEEEEehHHHHH
Q 040922 436 VPDFLAELESLTVLNLSGNNLQGSLPAGLVEKANNRSLSLSVERNPNFCLSD---SCKKKN-NRFIVPVLASVVTF 507 (525)
Q Consensus 436 iP~~l~~l~~L~~L~Ls~N~L~g~iP~~l~~l~~l~~l~L~l~~N~~~C~~~---~c~~~~-~~~~i~v~~~~~~~ 507 (525)
+|..+++|++|+.|+|++|+|+|.+|..+..+. +....+++.+|+.+|++. .|..+. ...++.++++++++
T Consensus 482 iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~-~~~~~l~~~~N~~lc~~p~l~~C~~~~~~~~~i~~~~~~~~~ 556 (623)
T PLN03150 482 IPESLGQLTSLRILNLNGNSLSGRVPAALGGRL-LHRASFNFTDNAGLCGIPGLRACGPHLSVGAKIGIAFGVSVA 556 (623)
T ss_pred CchHHhcCCCCCEEECcCCcccccCChHHhhcc-ccCceEEecCCccccCCCCCCCCcccCCCceEEEEEhHHHHH
Confidence 777777777777777777777777777766532 122345677999999874 575432 22555555554443
No 2
>PF12819 Malectin_like: Carbohydrate-binding protein of the ER; InterPro: IPR024788 Malectin is a membrane-anchored protein of the endoplasmic reticulum that recognises and binds Glc2-N-glycan []. This entry represents a malectin-like domain found in a number of plant receptor kinases.
Probab=100.00 E-value=3e-73 Score=584.51 Aligned_cols=323 Identities=45% Similarity=0.783 Sum_probs=272.8
Q ss_pred EccCCCCCCc-cccCCCCeeeecCCCcccCCceeeecCCC--CCccccccceEeeeeCCCCCceEEecCc--CCCcceEE
Q 040922 17 IDCGIPENAS-YSDKITGINYVSDATYVDTGVSHSISSGY--NNEAVERQFLNLRSFPEGIRNCYTLRPA--NGDVKFLI 91 (525)
Q Consensus 17 idCG~~~~~~-~~d~~~~~~w~~D~~~~~~g~~~~~~~~~--~~~~~~~~y~t~R~Fp~~~~~cY~~~v~--~g~~~yli 91 (525)
||||++.+.+ |+|+.+||+|++|.+|+++|++..+++.. ..+...++|+|||+||+|+|+||+|++. +|+ ||||
T Consensus 1 IdCG~~~~~s~y~D~~tg~~~~~D~~~~~~g~~~~i~~~~~~~~~~~~~~y~taR~F~~g~r~cY~l~~~~~~~~-~yli 79 (347)
T PF12819_consen 1 IDCGSSSNSSSYVDDSTGRTWVSDDDFIDTGKSGNISSQPDSSSSDSSPPYQTARIFPEGSRNCYTLPVTPPGGG-KYLI 79 (347)
T ss_pred CcCCCCCCCcccccCCCCcEEeCCCCcccCCCccccccccCCcCCccccccceEEEcCCCCccEEEeeccCCCCc-eEEE
Confidence 7999997777 99988999999999999999988884221 1234568999999999999999999997 455 9999
Q ss_pred EEEeecCCCCCCC-----CCCeeEEEeCceEEEEEEeccC-CCcEEEEEEEecC-CCcEEEEEEeCCCCC-ceeEEEEEE
Q 040922 92 RASFMYGNYDGQD-----MPPSFDLMLGADVWDSVQLQDS-DGIITKEIIHMPN-KGYIHVCLVHTYSGT-PFISALELR 163 (525)
Q Consensus 92 R~~F~y~nyd~~~-----~~p~F~v~~~~~~~~~v~~~~~-~~~~~~E~i~~~~-~~~l~vcf~~~~~~~-pFIn~iEl~ 163 (525)
||||+|||||+++ ++|.|||++|++.|.+|++++. ..+++||+++.+. ++.++|||+|++.|. ||||+||||
T Consensus 80 Rl~F~~gnyd~~~fs~~~~~~~FdL~~~~n~~~tV~~~~~~~~~~~~E~ii~v~~~~~l~vclv~~~~g~~pFIsaiEl~ 159 (347)
T PF12819_consen 80 RLHFYYGNYDGLNFSVSSSPPTFDLLLGFNFWSTVNLSNSPSSPVVKEFIINVTWSDTLSVCLVPTGSGTFPFISAIELR 159 (347)
T ss_pred EEEeccccccccccccccCCcceEEEECCceeEEEEecCCCcceEEEEEEEEEcCCCcEEEEEEeCCCCCCCceeEEEEE
Confidence 9999999999874 2578999999999999999872 1469999888877 799999999999775 999999999
Q ss_pred EcCCCcccc--c--ccceeeEEeeecCCCCCCCccCCCCCCCcccccCC-CCCceeeccceeec-CCCCCCCCChHHHHh
Q 040922 164 PITNSIYAT--Q--SGSLSRYFRWDVGSTTNETFRYPDDVYDRIWSPNS-FYYWAPISTSSNVD-STGTINFNLPSTVMQ 237 (525)
Q Consensus 164 ~lp~~~y~~--~--~~~l~~~~R~n~G~~~~~~i~~~~D~~~R~W~~d~-~~~~~~~~~~~~i~-~~~~~~~~~P~~V~~ 237 (525)
|||+++|+. . +.+|++++|+|||++. ..|||++|+|||+|.+.. ...|..+++..+|+ ...++.|.||.+||+
T Consensus 160 ~lp~~ly~~~~~~~s~~L~~~~R~n~G~~~-~~iryp~D~~dR~W~~~~~~~~~~~ist~~~i~~~~~~~~~~~P~~V~~ 238 (347)
T PF12819_consen 160 PLPDSLYPDTDANSSQALETVYRLNVGGSS-SFIRYPDDTYDRIWQPYSSSPGWSNISTTSNININSSNNPYDAPSAVYQ 238 (347)
T ss_pred ECCccceeccccCCCceeEEEEeecCCCcc-cccCCCCCcceeeccccccCccccccccceeeecccCCccCcChHHHHH
Confidence 999999942 2 3479999999999954 239999999999999764 55678888777776 445789999999999
Q ss_pred hccccCCCCeeeEEEEeecCCCceEEEEEEeecccccC-CCCceEEEEEEECCeeeccCcccceeeeeE--EEEeeecc-
Q 040922 238 TAAIPANGVTSLEFHWVPVNRTFKYYVYMHFSEVGSDL-AKNQTREMYIYFNGEKWHGPLSPSHLETVT--VYTTSAMT- 313 (525)
Q Consensus 238 TA~~~~~~~~~~~~~w~~v~~~~~y~v~lhF~Ei~~~~-~~~~~R~F~I~in~~~~~~~~~p~~~~~~~--~~~~~~~~- 313 (525)
||+++.+.+.+++++|.++++++.||||||||||+ .+ ...++|+|+|||||+.+.+++.|.+..... +|.++.+.
T Consensus 239 TA~~~~~~s~~~nltw~~~~~~~~y~v~lHFaEi~-~~~~~~~~R~F~IyiN~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 317 (347)
T PF12819_consen 239 TARTPSNSSDPLNLTWSFVDPGFSYYVRLHFAEIQ-SLSPNNNQREFDIYINGQTAYSDVSPPYLGADTVPYYSDYVVNV 317 (347)
T ss_pred hhhcccccccceEEEeccCCCCccEEEEEEEeecc-cccCCCCeEEEEEEECCeEccCccCcccccCcceEeecceEEEe
Confidence 99999887777999999999999999999999999 44 455689999999999987788886655443 35555443
Q ss_pred -ccceEEEEEeecCCCCchhHhhhhhhccc
Q 040922 314 -NYSRYDIEIRATDKSSLPPILNALEVYQV 342 (525)
Q Consensus 314 -~~~~l~l~l~~t~~s~lpp~ln~leil~~ 342 (525)
..+.++++|.++..+.+||+|||+|||++
T Consensus 318 ~~~~~~~isL~~t~~S~lppiLNalEIy~v 347 (347)
T PF12819_consen 318 PDSGFLNISLGPTPDSTLPPILNALEIYKV 347 (347)
T ss_pred cCCCEEEEEEEeCCCCCcCceeEeeeeEeC
Confidence 34579999999999999999999999985
No 3
>PLN03150 hypothetical protein; Provisional
Probab=99.77 E-value=4.4e-17 Score=180.58 Aligned_cols=152 Identities=13% Similarity=0.131 Sum_probs=100.1
Q ss_pred EEEccCCCCC---CccccCCC--CeeeecCCCcccCC-c----eeeecCCCCCc--cccccceEeeeeCCC-CCceEEec
Q 040922 15 ISIDCGIPEN---ASYSDKIT--GINYVSDATYVDTG-V----SHSISSGYNNE--AVERQFLNLRSFPEG-IRNCYTLR 81 (525)
Q Consensus 15 ~sidCG~~~~---~~~~d~~~--~~~w~~D~~~~~~g-~----~~~~~~~~~~~--~~~~~y~t~R~Fp~~-~~~cY~~~ 81 (525)
..|+||+... ..|.|+.- +|.|.+|..|.... . ...|......+ .+...|+|||.+.+. ..-.|+|+
T Consensus 194 ~R~n~G~~~~~~~~d~~~D~~~~dR~W~~d~~~~~~~~~~~st~~~I~~~~~~~~~~P~~VyqTA~~~~~~~~~lty~~~ 273 (623)
T PLN03150 194 KRLSCGAGKSKFDEDYSGDHWGGDRFWNRMQTFGSGSDQAISTENVIKKASNAPNFYPESLYQSALVSTDTQPDLSYTMD 273 (623)
T ss_pred EEEEecCcccccccCCCCCcccCccccCcCcccCCCcccccccccccccccCCCccChHHHhhhhccccCCCCceEEEee
Confidence 3799998532 23444444 79999998775321 1 11121110011 134589999998532 35799999
Q ss_pred CcCCCcceEEEEEeecCCCCC-CCCCCeeEEEeCceEE-EEEEecc----CCCcEEEEEEEecCCCcEEEEEEeCCCCCc
Q 040922 82 PANGDVKFLIRASFMYGNYDG-QDMPPSFDLMLGADVW-DSVQLQD----SDGIITKEIIHMPNKGYIHVCLVHTYSGTP 155 (525)
Q Consensus 82 v~~g~~~yliR~~F~y~nyd~-~~~~p~F~v~~~~~~~-~~v~~~~----~~~~~~~E~i~~~~~~~l~vcf~~~~~~~p 155 (525)
+.+++ +|+||+||.--.... ....-.|+|++++..+ ..+++.. ...++++|+.+.+.++.+.|+|+|..++.|
T Consensus 274 v~~~~-~Y~VrLhFaEi~~~~~~~~~R~F~V~ing~~~~~~~di~~~~g~~~~~~~~~~~v~~~~g~l~isl~p~~~s~p 352 (623)
T PLN03150 274 VDPNR-NYSVWLHFAEIDNSITAEGKRVFDVLINGDTAFKDVDIVKMSGERYTALVLNKTVAVSGRTLTIVLQPKKGTHA 352 (623)
T ss_pred cCCCC-CEEEEEEEEeccCccCCCceEEEEEEECCEEeecccChhhhcCCcccceEEEeEEeecCCeEEEEEeeCCCCcc
Confidence 98887 999999996332111 1122379999998653 3333311 124688999988888889999999887789
Q ss_pred eeEEEEEEEcCC
Q 040922 156 FISALELRPITN 167 (525)
Q Consensus 156 FIn~iEl~~lp~ 167 (525)
|||||||+.+-.
T Consensus 353 ilNaiEI~~~~~ 364 (623)
T PLN03150 353 IINAIEVFEIIT 364 (623)
T ss_pred eeeeeeeeeccc
Confidence 999999997653
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.21 E-value=3.1e-11 Score=141.39 Aligned_cols=83 Identities=34% Similarity=0.505 Sum_probs=73.4
Q ss_pred CCCceEEecCCCCCccCCCchhhccCCCcCEEEcCCCCCCCcCchhccCCCCCCEEeCCCCcCCCCCChhhhcCCCCcEE
Q 040922 394 QPPRIISLNLSSSGISGEIDPYIFSLTSIESLDLSNNSLTGLVPDFLAELESLTVLNLSGNNLQGSLPAGLVEKANNRSL 473 (525)
Q Consensus 394 ~~~~L~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~L~g~iP~~l~~l~~l~~l 473 (525)
.+++|+.|+|++|++.+.+|..+..+++|+.|+|++|.++|.+|..+..+++|+.|+|++|+++|.+|..+.++.+|+.+
T Consensus 497 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l 576 (968)
T PLN00113 497 SLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQV 576 (968)
T ss_pred hhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEE
Confidence 35678889999999998999999999999999999999999999999999999999999999999999998888888877
Q ss_pred EEE
Q 040922 474 SLS 476 (525)
Q Consensus 474 ~L~ 476 (525)
+++
T Consensus 577 ~ls 579 (968)
T PLN00113 577 NIS 579 (968)
T ss_pred ecc
Confidence 764
No 5
>PF11721 Malectin: Di-glucose binding within endoplasmic reticulum; InterPro: IPR021720 Malectin is a membrane-anchored protein of the endoplasmic reticulum that recognises and binds Glc2-N-glycan. It carries a signal peptide from residues 1-26, a C-terminal transmembrane helix from residues 255-274, and a highly conserved central part of approximately 190 residues followed by an acidic, glutamate-rich region. Carbohydrate-binding is mediated by the four aromatic residues, Y67, Y89, Y116, and F117 and the aspartate at D186. NMR-based ligand-screening studies has shown binding of the protein to maltose and related oligosaccharides, on the basis of which the protein has been designated "malectin", and its endogenous ligand is found to be Glc2-high-mannose N-glycan [. This entry represents a malectin domain, and can also be found in probable receptor-like serine/threonine-protein kinases from plants [] and in proteins described as glycoside hydrolases. ; PDB: 2KR2_A 2JWP_A 2K46_A.
Probab=99.02 E-value=1e-09 Score=102.26 Aligned_cols=139 Identities=18% Similarity=0.312 Sum_probs=76.9
Q ss_pred EEEccCCCCCCccccCCCCeeeecCCCcccCCcee-----------eecCCCCCccccccceEeeeeCCCCCceEEecCc
Q 040922 15 ISIDCGIPENASYSDKITGINYVSDATYVDTGVSH-----------SISSGYNNEAVERQFLNLRSFPEGIRNCYTLRPA 83 (525)
Q Consensus 15 ~sidCG~~~~~~~~d~~~~~~w~~D~~~~~~g~~~-----------~~~~~~~~~~~~~~y~t~R~Fp~~~~~cY~~~v~ 83 (525)
+.||||++. ++| ..|+.|.+|..|...+... .....-.......+|+|.|.=|+ ...|.+|+.
T Consensus 3 ~~IN~Gg~~---~~~-~~g~~w~~D~~~~~g~~~y~~~~~~~~~~~~~~~~i~~t~d~~Lyqt~R~g~~--~f~Y~ip~~ 76 (174)
T PF11721_consen 3 LRINAGGPA---YTD-SSGIVWEADQYYTGGSWGYYVSSDNNGSTSSTNSSIPGTTDDPLYQTERYGPS--SFSYDIPVV 76 (174)
T ss_dssp EEEEETSSS---EEE-TTTEEE-SSSSSTTSS-----------SSTTS--TTS-HHHHHTTT-----SS--SEEEEEE--
T ss_pred EEEECCCCc---ccC-CCCCEEcCCCCCCCCCcccccccccccccccccccccCCCchhhhHhhcCCCC--ceEEEEecC
Confidence 579999864 343 5799999999775332200 01111111224579999999544 489999965
Q ss_pred CCCcceEEEEEeecCCCCC--CCC---CCeeEEEeCceE-EEEEEecc---C-CCcEEEEE-EEecCCCcEEEEEEeC--
Q 040922 84 NGDVKFLIRASFMYGNYDG--QDM---PPSFDLMLGADV-WDSVQLQD---S-DGIITKEI-IHMPNKGYIHVCLVHT-- 150 (525)
Q Consensus 84 ~g~~~yliR~~F~y~nyd~--~~~---~p~F~v~~~~~~-~~~v~~~~---~-~~~~~~E~-i~~~~~~~l~vcf~~~-- 150 (525)
+.| .|-|||||.=..+.. ... .-.|||++++.. ...+++.. . ..++++++ -+.++++.|.|+|...
T Consensus 77 ~~G-~Y~V~L~FaE~~~~~~~~~~~~G~RvFdV~v~g~~vl~~~Di~~~~G~~~~~~~~~~~~v~v~dg~L~i~f~~~~~ 155 (174)
T PF11721_consen 77 PNG-TYTVRLHFAELYFGASGGASGPGQRVFDVYVNGETVLKNFDIYAEAGGFNKAAVRRFFNVTVTDGTLNIQFVWAGK 155 (174)
T ss_dssp S-E-EEEEEEEEE-SSS--------SSSS-EEEEETTEEEEEEE-HHHHHSSSS---EEEEEEEEEETTEEETTEEEE--
T ss_pred CCc-EEEEEEEeccccccccccccCCCceEEEEEecceEEEeccCHHHHcCCCceEEEEEEEEEEEeCCcEEEEEEecCC
Confidence 555 999999994211211 111 137999999955 66666533 1 22577777 4567889999999963
Q ss_pred ---------CCCCceeEEE
Q 040922 151 ---------YSGTPFISAL 160 (525)
Q Consensus 151 ---------~~~~pFIn~i 160 (525)
..+.|.||||
T Consensus 156 ~~~~i~~~~~~~~p~IsaI 174 (174)
T PF11721_consen 156 GTLCIPFIGSYGNPLISAI 174 (174)
T ss_dssp SEEEEEEESSSSSSSEEEE
T ss_pred CcEEeeccccCCCcEEeeC
Confidence 3445777776
No 6
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=98.88 E-value=6.7e-09 Score=121.86 Aligned_cols=119 Identities=34% Similarity=0.637 Sum_probs=62.0
Q ss_pred cchhhHHHHHHhhhhcc----cCCCCCC--CCCCCcccccccccCCCCC--------------------CCCCceEEecC
Q 040922 350 THQQDVDAITNIKSKYE----VKRDWQG--DPCTPKVHLWQGLNCSYDD--------------------NQPPRIISLNL 403 (525)
Q Consensus 350 t~~~d~~al~~l~~~~~----~~~~w~g--~pc~p~~~~w~gv~c~~~~--------------------~~~~~L~~L~L 403 (525)
+.+.|..+|..+|..+. ...+|+. ++| .|.|+.|+... ..+++|+.|+|
T Consensus 26 ~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~c-----~w~gv~c~~~~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~L 100 (968)
T PLN00113 26 LHAEELELLLSFKSSINDPLKYLSNWNSSADVC-----LWQGITCNNSSRVVSIDLSGKNISGKISSAIFRLPYIQTINL 100 (968)
T ss_pred CCHHHHHHHHHHHHhCCCCcccCCCCCCCCCCC-----cCcceecCCCCcEEEEEecCCCccccCChHHhCCCCCCEEEC
Confidence 46688999999998774 2457853 445 79999997421 01344555555
Q ss_pred CCCCccCCCchhhc-cCCCcCEEEcCCCCCCCcCchhccCCCCCCEEeCCCCcCCCCCChhhhcCCCCcEEEE
Q 040922 404 SSSGISGEIDPYIF-SLTSIESLDLSNNSLTGLVPDFLAELESLTVLNLSGNNLQGSLPAGLVEKANNRSLSL 475 (525)
Q Consensus 404 s~n~l~g~ip~~~~-~L~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~L~g~iP~~l~~l~~l~~l~L 475 (525)
++|+++|.+|..+. .+.+|+.|+|++|++.|.+|. +.+++|++|+|++|.+++.+|..++++.+|+.|++
T Consensus 101 s~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L 171 (968)
T PLN00113 101 SNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDL 171 (968)
T ss_pred CCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCChHHhcCCCCCEEEC
Confidence 55555555554433 444444444444444333222 12333333333333344444444444444444443
No 7
>PF11721 Malectin: Di-glucose binding within endoplasmic reticulum; InterPro: IPR021720 Malectin is a membrane-anchored protein of the endoplasmic reticulum that recognises and binds Glc2-N-glycan. It carries a signal peptide from residues 1-26, a C-terminal transmembrane helix from residues 255-274, and a highly conserved central part of approximately 190 residues followed by an acidic, glutamate-rich region. Carbohydrate-binding is mediated by the four aromatic residues, Y67, Y89, Y116, and F117 and the aspartate at D186. NMR-based ligand-screening studies has shown binding of the protein to maltose and related oligosaccharides, on the basis of which the protein has been designated "malectin", and its endogenous ligand is found to be Glc2-high-mannose N-glycan [. This entry represents a malectin domain, and can also be found in probable receptor-like serine/threonine-protein kinases from plants [] and in proteins described as glycoside hydrolases. ; PDB: 2KR2_A 2JWP_A 2K46_A.
Probab=98.87 E-value=1.7e-09 Score=100.78 Aligned_cols=107 Identities=21% Similarity=0.332 Sum_probs=59.7
Q ss_pred EEeeecCCCCCCCccCCCCCCCcccccCCCC--Cceee-cc---ce-eecCCCCCCCCChHHHHhhccccCCCCeeeEEE
Q 040922 180 YFRWDVGSTTNETFRYPDDVYDRIWSPNSFY--YWAPI-ST---SS-NVDSTGTINFNLPSTVMQTAAIPANGVTSLEFH 252 (525)
Q Consensus 180 ~~R~n~G~~~~~~i~~~~D~~~R~W~~d~~~--~~~~~-~~---~~-~i~~~~~~~~~~P~~V~~TA~~~~~~~~~~~~~ 252 (525)
++|+|+||+. + .|...+.|.+|... +.... .. .. ............+..+|||++.+.. .+.+.
T Consensus 2 ~~~IN~Gg~~-----~-~~~~g~~w~~D~~~~~g~~~y~~~~~~~~~~~~~~~~i~~t~d~~Lyqt~R~g~~---~f~Y~ 72 (174)
T PF11721_consen 2 VLRINAGGPA-----Y-TDSSGIVWEADQYYTGGSWGYYVSSDNNGSTSSTNSSIPGTTDDPLYQTERYGPS---SFSYD 72 (174)
T ss_dssp EEEEEETSSS-----E-EETTTEEE-SSSSSTTSS-----------SSTTS--TTS-HHHHHTTT-----SS---SEEEE
T ss_pred EEEEECCCCc-----c-cCCCCCEEcCCCCCCCCCcccccccccccccccccccccCCCchhhhHhhcCCCC---ceEEE
Confidence 6899999942 4 77889999999532 11111 11 00 0111112334668899999988543 24444
Q ss_pred EeecCCCceEEEEEEeecccccCCC------CceEEEEEEECCeeeccCccc
Q 040922 253 WVPVNRTFKYYVYMHFSEVGSDLAK------NQTREMYIYFNGEKWHGPLSP 298 (525)
Q Consensus 253 w~~v~~~~~y~v~lhF~Ei~~~~~~------~~~R~F~I~in~~~~~~~~~p 298 (525)
. ++.++..|-|+|||||+. ... .++|+|+|+|||+.+...+++
T Consensus 73 i-p~~~~G~Y~V~L~FaE~~--~~~~~~~~~~G~RvFdV~v~g~~vl~~~Di 121 (174)
T PF11721_consen 73 I-PVVPNGTYTVRLHFAELY--FGASGGASGPGQRVFDVYVNGETVLKNFDI 121 (174)
T ss_dssp E-E--S-EEEEEEEEEE-SS--S--------SSSS-EEEEETTEEEEEEE-H
T ss_pred E-ecCCCcEEEEEEEecccc--ccccccccCCCceEEEEEecceEEEeccCH
Confidence 3 445677899999999998 444 789999999999988766665
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=98.78 E-value=2.1e-09 Score=113.34 Aligned_cols=152 Identities=20% Similarity=0.244 Sum_probs=108.6
Q ss_pred cceEEEEEeecCCCCchhHhhhhhhccccccCccc--cchhhHHHHHHhhhhcccCCCC--CCCCCCCcccccccccCCC
Q 040922 315 YSRYDIEIRATDKSSLPPILNALEVYQVKEFPQLL--THQQDVDAITNIKSKYEVKRDW--QGDPCTPKVHLWQGLNCSY 390 (525)
Q Consensus 315 ~~~l~l~l~~t~~s~lpp~ln~leil~~~~~~~~~--t~~~d~~al~~l~~~~~~~~~w--~g~pc~p~~~~w~gv~c~~ 390 (525)
.++.|+.++.+....+|..|..+..+..+..+++. +..++...|..+++.....++. +|-|-
T Consensus 32 t~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~-------------- 97 (1255)
T KOG0444|consen 32 TQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPT-------------- 97 (1255)
T ss_pred hheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCCCc--------------
Confidence 45789999999999999999998888887766553 3344444444443322211111 12221
Q ss_pred CCCCCCceEEecCCCCCccCCCchhhccCCCcCEEEcCCCCCCCcCchhccCCCCCCEEeCCCCcCCCCCChhhhcCCCC
Q 040922 391 DDNQPPRIISLNLSSSGISGEIDPYIFSLTSIESLDLSNNSLTGLVPDFLAELESLTVLNLSGNNLQGSLPAGLVEKANN 470 (525)
Q Consensus 391 ~~~~~~~L~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~L~g~iP~~l~~l~~l 470 (525)
....+..|+.|+||+|+|. ..|..+..-+++-.|+||+|++.......|.+|+.|-.||||+|+|. .+|+.+..|..|
T Consensus 98 diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~L 175 (1255)
T KOG0444|consen 98 DIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSML 175 (1255)
T ss_pred hhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhh
Confidence 1113567889999999998 88888888888999999999999444456778899999999999998 888888888888
Q ss_pred cEEEEEecCCCCCC
Q 040922 471 RSLSLSVERNPNFC 484 (525)
Q Consensus 471 ~~l~L~l~~N~~~C 484 (525)
+.|+|+ +||...
T Consensus 176 qtL~Ls--~NPL~h 187 (1255)
T KOG0444|consen 176 QTLKLS--NNPLNH 187 (1255)
T ss_pred hhhhcC--CChhhH
Confidence 776554 777544
No 9
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.58 E-value=2.8e-08 Score=75.73 Aligned_cols=61 Identities=41% Similarity=0.585 Sum_probs=53.4
Q ss_pred CceEEecCCCCCccCCCchhhccCCCcCEEEcCCCCCCCcCchhccCCCCCCEEeCCCCcC
Q 040922 396 PRIISLNLSSSGISGEIDPYIFSLTSIESLDLSNNSLTGLVPDFLAELESLTVLNLSGNNL 456 (525)
Q Consensus 396 ~~L~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~L 456 (525)
++|+.|+|++|+++...+..|..+++|+.|++++|++....|..|..+++|++|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 4688999999999955556789999999999999999988888999999999999999975
No 10
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=98.48 E-value=1.6e-08 Score=91.46 Aligned_cols=82 Identities=30% Similarity=0.446 Sum_probs=67.4
Q ss_pred CCceEEecCCCCCccCCCchhhccCCCcCEEEcCCCCCCCcCchhccCCCCCCEEeCCCCcCCCCCChhhhcCCCCcEEE
Q 040922 395 PPRIISLNLSSSGISGEIDPYIFSLTSIESLDLSNNSLTGLVPDFLAELESLTVLNLSGNNLQGSLPAGLVEKANNRSLS 474 (525)
Q Consensus 395 ~~~L~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~L~g~iP~~l~~l~~l~~l~ 474 (525)
+.+++.|-||+|+++ .+|+.+..|.+|+.|++++|+++ .+|..++.|++|++|+++-|+|. .+|.+++.++.|+.|+
T Consensus 32 ~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levld 108 (264)
T KOG0617|consen 32 MSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLD 108 (264)
T ss_pred hhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhh
Confidence 456778888888888 77888888888888888888888 78888888888888888888888 7888888888888888
Q ss_pred EEecC
Q 040922 475 LSVER 479 (525)
Q Consensus 475 L~l~~ 479 (525)
|.+++
T Consensus 109 ltynn 113 (264)
T KOG0617|consen 109 LTYNN 113 (264)
T ss_pred ccccc
Confidence 76553
No 11
>PF12819 Malectin_like: Carbohydrate-binding protein of the ER; InterPro: IPR024788 Malectin is a membrane-anchored protein of the endoplasmic reticulum that recognises and binds Glc2-N-glycan []. This entry represents a malectin-like domain found in a number of plant receptor kinases.
Probab=98.45 E-value=1.6e-06 Score=89.70 Aligned_cols=149 Identities=14% Similarity=0.216 Sum_probs=90.3
Q ss_pred cEEEccCCCC-CCccccCCCCeeeecC---CCcccCCceeeec---CCCCCccccccceEeeeeCCCC---CceEEecCc
Q 040922 14 FISIDCGIPE-NASYSDKITGINYVSD---ATYVDTGVSHSIS---SGYNNEAVERQFLNLRSFPEGI---RNCYTLRPA 83 (525)
Q Consensus 14 f~sidCG~~~-~~~~~d~~~~~~w~~D---~~~~~~g~~~~~~---~~~~~~~~~~~y~t~R~Fp~~~---~~cY~~~v~ 83 (525)
+.+++||++. ...|.|+.-+|.|.+. ..+..-.....+. .......+..-|+|||.=.... .-.+.| +.
T Consensus 180 ~~R~n~G~~~~~iryp~D~~dR~W~~~~~~~~~~~ist~~~i~~~~~~~~~~~P~~V~~TA~~~~~~s~~~nltw~~-~~ 258 (347)
T PF12819_consen 180 VYRLNVGGSSSFIRYPDDTYDRIWQPYSSSPGWSNISTTSNININSSNNPYDAPSAVYQTARTPSNSSDPLNLTWSF-VD 258 (347)
T ss_pred EEeecCCCcccccCCCCCcceeeccccccCccccccccceeeecccCCccCcChHHHHHhhhcccccccceEEEecc-CC
Confidence 4579999863 3678888889999963 2221111111121 1111112456899999954332 123333 55
Q ss_pred CCCcceEEEEEeec-CCC-CCCCCCCeeEEEeCceEEEE-EEe--cc-CCCcEEEEEEEecCC-CcEEEEEEeCCCC--C
Q 040922 84 NGDVKFLIRASFMY-GNY-DGQDMPPSFDLMLGADVWDS-VQL--QD-SDGIITKEIIHMPNK-GYIHVCLVHTYSG--T 154 (525)
Q Consensus 84 ~g~~~yliR~~F~y-~ny-d~~~~~p~F~v~~~~~~~~~-v~~--~~-~~~~~~~E~i~~~~~-~~l~vcf~~~~~~--~ 154 (525)
++. .|+||+||.= ..- .+.+ .-.|++++++..|.. +.. .. ...++++.+++.+.+ ..+.|+|.|+.++ -
T Consensus 259 ~~~-~y~v~lHFaEi~~~~~~~~-~R~F~IyiN~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~isL~~t~~S~lp 336 (347)
T PF12819_consen 259 PGF-SYYVRLHFAEIQSLSPNNN-QREFDIYINGQTAYSDVSPPYLGADTVPYYSDYVVNVPDSGFLNISLGPTPDSTLP 336 (347)
T ss_pred CCc-cEEEEEEEeecccccCCCC-eEEEEEEECCeEccCccCcccccCcceEeecceEEEecCCCEEEEEEEeCCCCCcC
Confidence 666 8999999941 111 1111 237999999988652 222 11 123357778877654 5789999999876 4
Q ss_pred ceeEEEEEEEc
Q 040922 155 PFISALELRPI 165 (525)
Q Consensus 155 pFIn~iEl~~l 165 (525)
|+|||+||..|
T Consensus 337 piLNalEIy~v 347 (347)
T PF12819_consen 337 PILNALEIYKV 347 (347)
T ss_pred ceeEeeeeEeC
Confidence 99999999864
No 12
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.34 E-value=1.5e-07 Score=95.12 Aligned_cols=91 Identities=24% Similarity=0.298 Sum_probs=83.0
Q ss_pred CCCceEEecCCCCCccCCCchhhccCCCcCEEEcCCCCCCCcCchhccCCCCCCEEeCCCCcCCCCCChhhhcCCCCcEE
Q 040922 394 QPPRIISLNLSSSGISGEIDPYIFSLTSIESLDLSNNSLTGLVPDFLAELESLTVLNLSGNNLQGSLPAGLVEKANNRSL 473 (525)
Q Consensus 394 ~~~~L~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~L~g~iP~~l~~l~~l~~l 473 (525)
.+++|+.|+|++|++++.-+.+|..+..++.|.|..|+|.-.-...|.++..|+.|+|.+|+++..-|-.+..+..|..|
T Consensus 272 ~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l 351 (498)
T KOG4237|consen 272 KLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTL 351 (498)
T ss_pred hcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeee
Confidence 57899999999999998889999999999999999999997777889999999999999999998888888888888776
Q ss_pred EEEecCCCCCCCC
Q 040922 474 SLSVERNPNFCLS 486 (525)
Q Consensus 474 ~L~l~~N~~~C~~ 486 (525)
.| -+|||.|+|
T Consensus 352 ~l--~~Np~~CnC 362 (498)
T KOG4237|consen 352 NL--LSNPFNCNC 362 (498)
T ss_pred eh--ccCcccCcc
Confidence 55 489999998
No 13
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=98.29 E-value=2.2e-07 Score=94.14 Aligned_cols=140 Identities=25% Similarity=0.314 Sum_probs=104.4
Q ss_pred EeecCCCCchhHhhhhhhccccccCcc--ccchhhHHHHHHhhhhcccCCCCCCCCCCCcccccccccCCCCCCCCCceE
Q 040922 322 IRATDKSSLPPILNALEVYQVKEFPQL--LTHQQDVDAITNIKSKYEVKRDWQGDPCTPKVHLWQGLNCSYDDNQPPRII 399 (525)
Q Consensus 322 l~~t~~s~lpp~ln~leil~~~~~~~~--~t~~~d~~al~~l~~~~~~~~~w~g~pc~p~~~~w~gv~c~~~~~~~~~L~ 399 (525)
+..+....+||...+|..++.++...+ .+.|.|.+.|.++.-.|.......--|-.| .| ..|.
T Consensus 167 ~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~~lPef~--------gc-------s~L~ 231 (565)
T KOG0472|consen 167 LEGNKLKALPENHIAMKRLKHLDCNSNLLETLPPELGGLESLELLYLRRNKIRFLPEFP--------GC-------SLLK 231 (565)
T ss_pred ccccchhhCCHHHHHHHHHHhcccchhhhhcCChhhcchhhhHHHHhhhcccccCCCCC--------cc-------HHHH
Confidence 334445566666666888887776555 577888888877766554333332223211 12 3578
Q ss_pred EecCCCCCccCCCchhhc-cCCCcCEEEcCCCCCCCcCchhccCCCCCCEEeCCCCcCCCCCChhhhcCCCCcEEEEEec
Q 040922 400 SLNLSSSGISGEIDPYIF-SLTSIESLDLSNNSLTGLVPDFLAELESLTVLNLSGNNLQGSLPAGLVEKANNRSLSLSVE 478 (525)
Q Consensus 400 ~L~Ls~n~l~g~ip~~~~-~L~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~L~g~iP~~l~~l~~l~~l~L~l~ 478 (525)
+|+++.|++. .+|.+.. +|.+|..|||..|+++ ..|+.+.-+.+|..||||+|.++ .+|.+++++ .| ..|.+.
T Consensus 232 Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is-~Lp~sLgnl-hL--~~L~le 305 (565)
T KOG0472|consen 232 ELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDIS-SLPYSLGNL-HL--KFLALE 305 (565)
T ss_pred HHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccc-cCCcccccc-ee--eehhhc
Confidence 8999999998 7888766 8999999999999999 99999999999999999999999 789998887 34 446677
Q ss_pred CCCC
Q 040922 479 RNPN 482 (525)
Q Consensus 479 ~N~~ 482 (525)
|||.
T Consensus 306 GNPl 309 (565)
T KOG0472|consen 306 GNPL 309 (565)
T ss_pred CCch
Confidence 9983
No 14
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=98.17 E-value=1.5e-07 Score=85.28 Aligned_cols=69 Identities=28% Similarity=0.445 Sum_probs=41.6
Q ss_pred ceEEecCCCCCccCCCchhhccCCCcCEEEcCCCCCCCcCchhccCCCCCCEEeCCCCcCCCCCChhhhcCC
Q 040922 397 RIISLNLSSSGISGEIDPYIFSLTSIESLDLSNNSLTGLVPDFLAELESLTVLNLSGNNLQGSLPAGLVEKA 468 (525)
Q Consensus 397 ~L~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~L~g~iP~~l~~l~ 468 (525)
.|+.|+|+.|.+. .+|+++++|++|+.|.+..|.|- .+|..++.|+.|+.|++++|+|+ .+|++++++.
T Consensus 128 tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~-vlppel~~l~ 196 (264)
T KOG0617|consen 128 TLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT-VLPPELANLD 196 (264)
T ss_pred HHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceee-ecChhhhhhh
Confidence 3455555555555 55666666666666666666665 56666666666666666666666 5666655443
No 15
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=98.16 E-value=1.5e-06 Score=88.19 Aligned_cols=84 Identities=31% Similarity=0.422 Sum_probs=64.0
Q ss_pred CceEEecCCCCCccCCCchhhccCCCcCEEEcCCCCC-----------------------CCcCchhccCCCCCCEEeCC
Q 040922 396 PRIISLNLSSSGISGEIDPYIFSLTSIESLDLSNNSL-----------------------TGLVPDFLAELESLTVLNLS 452 (525)
Q Consensus 396 ~~L~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l-----------------------~g~iP~~l~~l~~L~~L~Ls 452 (525)
++|+.|+|++|-+. .+|.+++.+..|+.||+|+|++ ....|+.+..|.+|..|||.
T Consensus 435 ~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~ 513 (565)
T KOG0472|consen 435 QKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQ 513 (565)
T ss_pred hcceeeecccchhh-hcchhhhhhhhhheecccccccccchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccC
Confidence 45666666666666 6666666666666666666644 43334448889999999999
Q ss_pred CCcCCCCCChhhhcCCCCcEEEEEecCCCCC
Q 040922 453 GNNLQGSLPAGLVEKANNRSLSLSVERNPNF 483 (525)
Q Consensus 453 ~N~L~g~iP~~l~~l~~l~~l~L~l~~N~~~ 483 (525)
+|.+. .||+.++++.++++|.++ |||+-
T Consensus 514 nNdlq-~IPp~LgnmtnL~hLeL~--gNpfr 541 (565)
T KOG0472|consen 514 NNDLQ-QIPPILGNMTNLRHLELD--GNPFR 541 (565)
T ss_pred CCchh-hCChhhccccceeEEEec--CCccC
Confidence 99999 999999999999997765 99874
No 16
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.14 E-value=4.3e-07 Score=91.91 Aligned_cols=96 Identities=27% Similarity=0.369 Sum_probs=79.0
Q ss_pred ccCCCCCC------CCCceEEecCCCCCccCCCchhhccCCCcCEEEcCCCCCCCcCchhccCCCCCCEEeCC-CCcCCC
Q 040922 386 LNCSYDDN------QPPRIISLNLSSSGISGEIDPYIFSLTSIESLDLSNNSLTGLVPDFLAELESLTVLNLS-GNNLQG 458 (525)
Q Consensus 386 v~c~~~~~------~~~~L~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls-~N~L~g 458 (525)
|.|+..+- .|+..+.|+|..|+|+...|..|..+.+|+.||||+|+|+-.-|++|.+|++|..|-+- +|+++
T Consensus 51 VdCr~~GL~eVP~~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~- 129 (498)
T KOG4237|consen 51 VDCRGKGLTEVPANLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT- 129 (498)
T ss_pred EEccCCCcccCcccCCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh-
Confidence 77877652 36788999999999996666779999999999999999999999999999999776655 59999
Q ss_pred CCChh-hhcCCCCcEEEEEecCCCCCCCC
Q 040922 459 SLPAG-LVEKANNRSLSLSVERNPNFCLS 486 (525)
Q Consensus 459 ~iP~~-l~~l~~l~~l~L~l~~N~~~C~~ 486 (525)
.+|.. +.+|..++.| ..|++.|.|
T Consensus 130 ~l~k~~F~gL~slqrL----llNan~i~C 154 (498)
T KOG4237|consen 130 DLPKGAFGGLSSLQRL----LLNANHINC 154 (498)
T ss_pred hhhhhHhhhHHHHHHH----hcChhhhcc
Confidence 77765 5677776654 357888887
No 17
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.09 E-value=1.7e-06 Score=65.79 Aligned_cols=60 Identities=45% Similarity=0.594 Sum_probs=52.2
Q ss_pred CCcCEEEcCCCCCCCcCchhccCCCCCCEEeCCCCcCCCCCChhhhcCCCCcEEEEEecCCC
Q 040922 420 TSIESLDLSNNSLTGLVPDFLAELESLTVLNLSGNNLQGSLPAGLVEKANNRSLSLSVERNP 481 (525)
Q Consensus 420 ~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~L~g~iP~~l~~l~~l~~l~L~l~~N~ 481 (525)
++|+.|++++|+++...+..|..+++|++|++++|+++...|..+..+.+|+.|+++ +|+
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~--~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLS--NNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEET--SSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCc--CCc
Confidence 478999999999997777899999999999999999996666788999999987765 553
No 18
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=98.01 E-value=2.7e-06 Score=89.98 Aligned_cols=89 Identities=22% Similarity=0.317 Sum_probs=74.9
Q ss_pred CCceEEecCCCCCccCCCch---hhccCCCcCEEEcCCCCCCCcCchhccCCCCCCEEeCCCCcCCCCCChhhhcCCCCc
Q 040922 395 PPRIISLNLSSSGISGEIDP---YIFSLTSIESLDLSNNSLTGLVPDFLAELESLTVLNLSGNNLQGSLPAGLVEKANNR 471 (525)
Q Consensus 395 ~~~L~~L~Ls~n~l~g~ip~---~~~~L~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~L~g~iP~~l~~l~~l~ 471 (525)
+++|+.|||++|.|++.|-. .|..|++|+.|+|.+|+|....-.+|+++..|++|||.+|-+...-|..+..+ .|+
T Consensus 364 lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk 442 (873)
T KOG4194|consen 364 LSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELK 442 (873)
T ss_pred hhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhh
Confidence 35789999999999987754 47889999999999999996666899999999999999999997778888777 566
Q ss_pred EEEEEecCCCCCCCC
Q 040922 472 SLSLSVERNPNFCLS 486 (525)
Q Consensus 472 ~l~L~l~~N~~~C~~ 486 (525)
.|.+ +.-.++|+|
T Consensus 443 ~Lv~--nSssflCDC 455 (873)
T KOG4194|consen 443 ELVM--NSSSFLCDC 455 (873)
T ss_pred hhhh--cccceEEec
Confidence 6554 356789998
No 19
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=97.89 E-value=1.2e-05 Score=74.75 Aligned_cols=82 Identities=32% Similarity=0.434 Sum_probs=37.2
Q ss_pred CCceEEecCCCCCccCCCchhhccCCCcCEEEcCCCCCCCcCchhc-cCCCCCCEEeCCCCcCCCCCC--hhhhcCCCCc
Q 040922 395 PPRIISLNLSSSGISGEIDPYIFSLTSIESLDLSNNSLTGLVPDFL-AELESLTVLNLSGNNLQGSLP--AGLVEKANNR 471 (525)
Q Consensus 395 ~~~L~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~g~iP~~l-~~l~~L~~L~Ls~N~L~g~iP--~~l~~l~~l~ 471 (525)
+.+|+.|+|++|+|+ .+. .+..|..|+.|++++|+++ .+...+ ..+++|+.|+|++|++.. +- ..+..+++|+
T Consensus 41 l~~L~~L~Ls~N~I~-~l~-~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~~L~L~~N~I~~-l~~l~~L~~l~~L~ 116 (175)
T PF14580_consen 41 LDKLEVLDLSNNQIT-KLE-GLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNLQELYLSNNKISD-LNELEPLSSLPKLR 116 (175)
T ss_dssp -TT--EEE-TTS--S---T-T----TT--EEE--SS----S-CHHHHHH-TT--EEE-TTS---S-CCCCGGGGG-TT--
T ss_pred hcCCCEEECCCCCCc-ccc-CccChhhhhhcccCCCCCC-ccccchHHhCCcCCEEECcCCcCCC-hHHhHHHHcCCCcc
Confidence 458999999999999 444 5888999999999999999 455444 468999999999999973 22 3456677776
Q ss_pred EEEEEecCCCC
Q 040922 472 SLSLSVERNPN 482 (525)
Q Consensus 472 ~l~L~l~~N~~ 482 (525)
.| ++.+||.
T Consensus 117 ~L--~L~~NPv 125 (175)
T PF14580_consen 117 VL--SLEGNPV 125 (175)
T ss_dssp EE--E-TT-GG
T ss_pred ee--eccCCcc
Confidence 65 5668984
No 20
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=97.71 E-value=1.6e-05 Score=84.27 Aligned_cols=82 Identities=26% Similarity=0.214 Sum_probs=48.5
Q ss_pred CCceEEecCCCCCccCCCchhhccCCCcCEEEcCCCCCCCcCchhccCCCCCCEEeCCCCcCCCCCChhhhcCCCCcEEE
Q 040922 395 PPRIISLNLSSSGISGEIDPYIFSLTSIESLDLSNNSLTGLVPDFLAELESLTVLNLSGNNLQGSLPAGLVEKANNRSLS 474 (525)
Q Consensus 395 ~~~L~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~L~g~iP~~l~~l~~l~~l~ 474 (525)
++.|+.|+||.|.|+...+..+...++|++|+|++|+++...+..|..|..|+.|+|++|.+...--..+..+++|+.|+
T Consensus 292 Lt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~Ld 371 (873)
T KOG4194|consen 292 LTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLD 371 (873)
T ss_pred cchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhc
Confidence 45566666666666655566666666666666666666655566666666666666666666522222334455555555
Q ss_pred EE
Q 040922 475 LS 476 (525)
Q Consensus 475 L~ 476 (525)
|+
T Consensus 372 Lr 373 (873)
T KOG4194|consen 372 LR 373 (873)
T ss_pred Cc
Confidence 44
No 21
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=97.67 E-value=3.7e-05 Score=71.51 Aligned_cols=80 Identities=39% Similarity=0.506 Sum_probs=27.4
Q ss_pred CCceEEecCCCCCccCCCchhhc-cCCCcCEEEcCCCCCCCcCchhccCCCCCCEEeCCCCcCCCCCChhhh-cCCCCcE
Q 040922 395 PPRIISLNLSSSGISGEIDPYIF-SLTSIESLDLSNNSLTGLVPDFLAELESLTVLNLSGNNLQGSLPAGLV-EKANNRS 472 (525)
Q Consensus 395 ~~~L~~L~Ls~n~l~g~ip~~~~-~L~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~L~g~iP~~l~-~l~~l~~ 472 (525)
+.+++.|+|++|+|+ .+. .++ .+.+|+.|+|++|.++. +. .+..++.|+.|+|++|+++ .++..+. .+++|+.
T Consensus 18 ~~~~~~L~L~~n~I~-~Ie-~L~~~l~~L~~L~Ls~N~I~~-l~-~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~~ 92 (175)
T PF14580_consen 18 PVKLRELNLRGNQIS-TIE-NLGATLDKLEVLDLSNNQITK-LE-GLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNLQE 92 (175)
T ss_dssp --------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS----S-CHHHHHH-TT--E
T ss_pred ccccccccccccccc-ccc-chhhhhcCCCEEECCCCCCcc-cc-CccChhhhhhcccCCCCCC-ccccchHHhCCcCCE
Confidence 457899999999998 443 565 58899999999999994 43 5778999999999999999 6766664 6888888
Q ss_pred EEEEecCCC
Q 040922 473 LSLSVERNP 481 (525)
Q Consensus 473 l~L~l~~N~ 481 (525)
|.++ +|.
T Consensus 93 L~L~--~N~ 99 (175)
T PF14580_consen 93 LYLS--NNK 99 (175)
T ss_dssp EE-T--TS-
T ss_pred EECc--CCc
Confidence 7764 554
No 22
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=97.66 E-value=1.7e-05 Score=88.16 Aligned_cols=83 Identities=36% Similarity=0.500 Sum_probs=47.0
Q ss_pred CceEEecCCCCCccCCCch-hhccCCCcCEEEcCCCCCCCcCch----------------------hccCCCCCCEEeCC
Q 040922 396 PRIISLNLSSSGISGEIDP-YIFSLTSIESLDLSNNSLTGLVPD----------------------FLAELESLTVLNLS 452 (525)
Q Consensus 396 ~~L~~L~Ls~n~l~g~ip~-~~~~L~~L~~L~Ls~N~l~g~iP~----------------------~l~~l~~L~~L~Ls 452 (525)
++|+.|+|++|+|+ .+|. .+.+|..|+.|+||+|+|+ .+|. .+.+++.|+.+|||
T Consensus 383 ~hLKVLhLsyNrL~-~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~~fPe~~~l~qL~~lDlS 460 (1081)
T KOG0618|consen 383 KHLKVLHLSYNRLN-SFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLLSFPELAQLPQLKVLDLS 460 (1081)
T ss_pred cceeeeeecccccc-cCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCceeechhhhhcCcceEEecc
Confidence 35566666666655 3332 3555555555555555554 3333 45667777788888
Q ss_pred CCcCCC-CCChhhhcCCCCcEEEEEecCCCCC
Q 040922 453 GNNLQG-SLPAGLVEKANNRSLSLSVERNPNF 483 (525)
Q Consensus 453 ~N~L~g-~iP~~l~~l~~l~~l~L~l~~N~~~ 483 (525)
.|+|+- .+|..+. -++|+.|+ +.||.++
T Consensus 461 ~N~L~~~~l~~~~p-~p~LkyLd--lSGN~~l 489 (1081)
T KOG0618|consen 461 CNNLSEVTLPEALP-SPNLKYLD--LSGNTRL 489 (1081)
T ss_pred cchhhhhhhhhhCC-Ccccceee--ccCCccc
Confidence 887763 3333332 25566654 4588853
No 23
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.66 E-value=4.4e-05 Score=54.06 Aligned_cols=36 Identities=47% Similarity=0.657 Sum_probs=22.1
Q ss_pred CcCEEEcCCCCCCCcCchhccCCCCCCEEeCCCCcCC
Q 040922 421 SIESLDLSNNSLTGLVPDFLAELESLTVLNLSGNNLQ 457 (525)
Q Consensus 421 ~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~L~ 457 (525)
+|+.|+|++|+++ .+|..+++|++|+.|+|++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 4666666666666 45555666666666666666666
No 24
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=97.60 E-value=1.7e-05 Score=88.14 Aligned_cols=80 Identities=23% Similarity=0.265 Sum_probs=56.7
Q ss_pred CceEEecCCCCCccCCCchhhccCCCcCEEEcCCCCCCCc-CchhccCCCCCCEEeCCCCcCCCCCChhhhcCCCCcEEE
Q 040922 396 PRIISLNLSSSGISGEIDPYIFSLTSIESLDLSNNSLTGL-VPDFLAELESLTVLNLSGNNLQGSLPAGLVEKANNRSLS 474 (525)
Q Consensus 396 ~~L~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~g~-iP~~l~~l~~L~~L~Ls~N~L~g~iP~~l~~l~~l~~l~ 474 (525)
++|+.|...+|++. ..| ++.++++|+.+|+|.|+|+-. +|.. ...++|++|||++|.-.-.--..+..+..+...+
T Consensus 430 ~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~-~p~p~LkyLdlSGN~~l~~d~~~l~~l~~l~~~~ 506 (1081)
T KOG0618|consen 430 GRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEA-LPSPNLKYLDLSGNTRLVFDHKTLKVLKSLSQMD 506 (1081)
T ss_pred hhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhh-CCCcccceeeccCCcccccchhhhHHhhhhhhee
Confidence 57888888888887 667 999999999999999999854 4443 3338999999999973212223344445555555
Q ss_pred EEec
Q 040922 475 LSVE 478 (525)
Q Consensus 475 L~l~ 478 (525)
+++.
T Consensus 507 i~~~ 510 (1081)
T KOG0618|consen 507 ITLN 510 (1081)
T ss_pred cccC
Confidence 5544
No 25
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=97.60 E-value=1.3e-05 Score=85.37 Aligned_cols=151 Identities=21% Similarity=0.302 Sum_probs=92.6
Q ss_pred CCCchhHhhhhhhccccccCccccchhhHHHHHHhhhh--cccCCC-CCC-CCCCCcccccccc---cCCCCC-------
Q 040922 327 KSSLPPILNALEVYQVKEFPQLLTHQQDVDAITNIKSK--YEVKRD-WQG-DPCTPKVHLWQGL---NCSYDD------- 392 (525)
Q Consensus 327 ~s~lpp~ln~leil~~~~~~~~~t~~~d~~al~~l~~~--~~~~~~-w~g-~pc~p~~~~w~gv---~c~~~~------- 392 (525)
...+|+.+..+..+.-++++.+. ++.-++++-.+... ++...+ ... .-|.. .|..+ +.+...
T Consensus 211 l~N~Ptsld~l~NL~dvDlS~N~-Lp~vPecly~l~~LrrLNLS~N~iteL~~~~~---~W~~lEtLNlSrNQLt~LP~a 286 (1255)
T KOG0444|consen 211 LDNIPTSLDDLHNLRDVDLSENN-LPIVPECLYKLRNLRRLNLSGNKITELNMTEG---EWENLETLNLSRNQLTVLPDA 286 (1255)
T ss_pred hhcCCCchhhhhhhhhccccccC-CCcchHHHhhhhhhheeccCcCceeeeeccHH---HHhhhhhhccccchhccchHH
Confidence 45678889999888888886653 23333333333221 111111 100 11111 23221 111100
Q ss_pred -CCCCceEEecCCCCCcc-CCCchhhccCCCcCEEEcCCCCCCCcCchhccCCCCCCEEeCCCCcCCCCCChhhhcCCCC
Q 040922 393 -NQPPRIISLNLSSSGIS-GEIDPYIFSLTSIESLDLSNNSLTGLVPDFLAELESLTVLNLSGNNLQGSLPAGLVEKANN 470 (525)
Q Consensus 393 -~~~~~L~~L~Ls~n~l~-g~ip~~~~~L~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~L~g~iP~~l~~l~~l 470 (525)
-.++.|+.|.+.+|+|+ ..||..++.|.+|+.+..++|.|. .+|+.+..+..|+.|.|++|+|- .+|+.+--|..|
T Consensus 287 vcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l 364 (1255)
T KOG0444|consen 287 VCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDL 364 (1255)
T ss_pred HhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCc
Confidence 02456777777777766 347777888888888888888877 78888888888888888888888 788888777777
Q ss_pred cEEEEEecCCCCCCC
Q 040922 471 RSLSLSVERNPNFCL 485 (525)
Q Consensus 471 ~~l~L~l~~N~~~C~ 485 (525)
+.|++. .||.+--
T Consensus 365 ~vLDlr--eNpnLVM 377 (1255)
T KOG0444|consen 365 KVLDLR--ENPNLVM 377 (1255)
T ss_pred ceeecc--CCcCccC
Confidence 776654 7887663
No 26
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=97.43 E-value=4.7e-05 Score=74.86 Aligned_cols=76 Identities=26% Similarity=0.371 Sum_probs=42.4
Q ss_pred CCceEEecCCCCCccCCCchhhccCCCcCEEEcCCCCCCCcCchhccCCCCCCEEeCCCCcCCCCCChhhhcCCCCcEEE
Q 040922 395 PPRIISLNLSSSGISGEIDPYIFSLTSIESLDLSNNSLTGLVPDFLAELESLTVLNLSGNNLQGSLPAGLVEKANNRSLS 474 (525)
Q Consensus 395 ~~~L~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~L~g~iP~~l~~l~~l~~l~ 474 (525)
.+.++.|++|.|++. .+. .+..|.+|+.||||+|.|+ .+-.+-.+|-+.+.|.|+.|.+.. -.++.+|-+|..|+
T Consensus 306 ~Pkir~L~lS~N~i~-~v~-nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~N~iE~--LSGL~KLYSLvnLD 380 (490)
T KOG1259|consen 306 APKLRRLILSQNRIR-TVQ-NLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQNKIET--LSGLRKLYSLVNLD 380 (490)
T ss_pred ccceeEEecccccee-eeh-hhhhcccceEeecccchhH-hhhhhHhhhcCEeeeehhhhhHhh--hhhhHhhhhheecc
Confidence 456666666666665 222 2566666666666666666 444455556666666666666651 12344444444444
Q ss_pred E
Q 040922 475 L 475 (525)
Q Consensus 475 L 475 (525)
+
T Consensus 381 l 381 (490)
T KOG1259|consen 381 L 381 (490)
T ss_pred c
Confidence 3
No 27
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.42 E-value=0.00011 Score=51.90 Aligned_cols=37 Identities=32% Similarity=0.603 Sum_probs=32.8
Q ss_pred CceEEecCCCCCccCCCchhhccCCCcCEEEcCCCCCC
Q 040922 396 PRIISLNLSSSGISGEIDPYIFSLTSIESLDLSNNSLT 433 (525)
Q Consensus 396 ~~L~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~ 433 (525)
++|+.|++++|+|+ .+|+.+.+|++|+.|++++|+++
T Consensus 1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 46899999999999 78888999999999999999998
No 28
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=97.35 E-value=0.00021 Score=80.75 Aligned_cols=78 Identities=23% Similarity=0.351 Sum_probs=52.1
Q ss_pred CceEEecCCCCCccCCCchhhccCCCcCEEEcCCCCCCCcCchhccCCCCCCEEeCCCCcCCCCCChhhhcCCCCcEEEE
Q 040922 396 PRIISLNLSSSGISGEIDPYIFSLTSIESLDLSNNSLTGLVPDFLAELESLTVLNLSGNNLQGSLPAGLVEKANNRSLSL 475 (525)
Q Consensus 396 ~~L~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~L~g~iP~~l~~l~~l~~l~L 475 (525)
..|+.|+|++|+|+ .+|.. ..+|+.|++++|+|++ +|.. ..+|+.|+|++|+|+ .+|..+.++.+|+.++
T Consensus 382 ~~L~~LdLs~N~Lt-~LP~l---~s~L~~LdLS~N~Lss-IP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~Ld- 451 (788)
T PRK15387 382 SGLKELIVSGNRLT-SLPVL---PSELKELMVSGNRLTS-LPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVN- 451 (788)
T ss_pred cccceEEecCCccc-CCCCc---ccCCCEEEccCCcCCC-CCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEE-
Confidence 45777788888777 35543 2567777888888773 5643 245667778888877 6777777777776544
Q ss_pred EecCCCCCC
Q 040922 476 SVERNPNFC 484 (525)
Q Consensus 476 ~l~~N~~~C 484 (525)
+.+|+..+
T Consensus 452 -Ls~N~Ls~ 459 (788)
T PRK15387 452 -LEGNPLSE 459 (788)
T ss_pred -CCCCCCCc
Confidence 44776543
No 29
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.26 E-value=4.6e-05 Score=66.94 Aligned_cols=70 Identities=26% Similarity=0.362 Sum_probs=38.6
Q ss_pred ceEEecCCCCCccCCCchhhccC-CCcCEEEcCCCCCCCcCchhccCCCCCCEEeCCCCcCCCCCChhhhcCCC
Q 040922 397 RIISLNLSSSGISGEIDPYIFSL-TSIESLDLSNNSLTGLVPDFLAELESLTVLNLSGNNLQGSLPAGLVEKAN 469 (525)
Q Consensus 397 ~L~~L~Ls~n~l~g~ip~~~~~L-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~L~g~iP~~l~~l~~ 469 (525)
+|+.++|++|.+. ..|..|... +.++.|+|++|.|+ .+|..++.++.|+.|+++.|.|. ..|..+..|.+
T Consensus 54 el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~ 124 (177)
T KOG4579|consen 54 ELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIK 124 (177)
T ss_pred eEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHh
Confidence 4555566666665 444444433 35556666666665 55555666666666666666665 45554444443
No 30
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=96.98 E-value=0.00023 Score=75.63 Aligned_cols=96 Identities=25% Similarity=0.356 Sum_probs=76.1
Q ss_pred CCCceEEecCCCCCccCCCchhhccCCCcCEEEcCCCCCCCcCchhccCCCCCCEEeCCCCcCCCCCChhhhcCCCCcEE
Q 040922 394 QPPRIISLNLSSSGISGEIDPYIFSLTSIESLDLSNNSLTGLVPDFLAELESLTVLNLSGNNLQGSLPAGLVEKANNRSL 473 (525)
Q Consensus 394 ~~~~L~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~L~g~iP~~l~~l~~l~~l 473 (525)
.+..|..|+.+.|.+. .+|+.++.|.+|+.|.+..|++. .+|+.+.. -.|..||+|+|+++ .||-.+.+|..|+.|
T Consensus 164 ~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~-LpLi~lDfScNkis-~iPv~fr~m~~Lq~l 239 (722)
T KOG0532|consen 164 LLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCS-LPLIRLDFSCNKIS-YLPVDFRKMRHLQVL 239 (722)
T ss_pred cchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhC-CceeeeecccCcee-ecchhhhhhhhheee
Confidence 3467788888888888 78888999999999999999888 67777774 45889999999999 899999999988765
Q ss_pred EEEecCCCCCCCCC-ccCCCCce
Q 040922 474 SLSVERNPNFCLSD-SCKKKNNR 495 (525)
Q Consensus 474 ~L~l~~N~~~C~~~-~c~~~~~~ 495 (525)
. |++||..-... -|.|.++.
T Consensus 240 ~--LenNPLqSPPAqIC~kGkVH 260 (722)
T KOG0532|consen 240 Q--LENNPLQSPPAQICEKGKVH 260 (722)
T ss_pred e--eccCCCCCChHHHHhcccee
Confidence 4 55899766432 57665543
No 31
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=96.82 E-value=0.00066 Score=76.83 Aligned_cols=68 Identities=29% Similarity=0.374 Sum_probs=59.3
Q ss_pred CCceEEecCCCCCccCCCchhhccCCCcCEEEcCCCCCCCcCchhccCCCCCCEEeCCCCcCCCCCChhhhcC
Q 040922 395 PPRIISLNLSSSGISGEIDPYIFSLTSIESLDLSNNSLTGLVPDFLAELESLTVLNLSGNNLQGSLPAGLVEK 467 (525)
Q Consensus 395 ~~~L~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~L~g~iP~~l~~l 467 (525)
+++|+.|++++|+|+ .+|.. ..+|+.|+|++|+|+ .+|..+..+++|+.|+|++|+|+|.+|..+..+
T Consensus 401 ~s~L~~LdLS~N~Ls-sIP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L~~l 468 (788)
T PRK15387 401 PSELKELMVSGNRLT-SLPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREI 468 (788)
T ss_pred ccCCCEEEccCCcCC-CCCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHHHHH
Confidence 357899999999999 57754 346888999999999 899999999999999999999999999887554
No 32
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=96.68 E-value=0.0013 Score=75.72 Aligned_cols=84 Identities=29% Similarity=0.339 Sum_probs=58.9
Q ss_pred CCceEEecCCCCCccCCCchhhccCCCcCEEEcCCCCCCCcCchhccCCCCCCEEeCCCCcCCCCCChhhhcCCCCcEEE
Q 040922 395 PPRIISLNLSSSGISGEIDPYIFSLTSIESLDLSNNSLTGLVPDFLAELESLTVLNLSGNNLQGSLPAGLVEKANNRSLS 474 (525)
Q Consensus 395 ~~~L~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~L~g~iP~~l~~l~~l~~l~ 474 (525)
++.|+.|||++|.--+.+|.+++.|.+|++|+|+...+. .+|..++.|..|.+|++..+.-...+|..+..+.+|+.|.
T Consensus 570 m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~ 648 (889)
T KOG4658|consen 570 LPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLR 648 (889)
T ss_pred CcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEE
Confidence 567777777776655577777777777777777777777 7777777777777777776655445555556677777777
Q ss_pred EEecC
Q 040922 475 LSVER 479 (525)
Q Consensus 475 L~l~~ 479 (525)
+...+
T Consensus 649 l~~s~ 653 (889)
T KOG4658|consen 649 LPRSA 653 (889)
T ss_pred eeccc
Confidence 66544
No 33
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=96.65 E-value=0.0038 Score=74.90 Aligned_cols=79 Identities=25% Similarity=0.250 Sum_probs=41.7
Q ss_pred CCceEEecCCCCCccCCCchhhccCCCcCEEEcCCCCCCCcCchhccCCCCCCEEeCCCCcCCCCCChhhhcCCCCcEEE
Q 040922 395 PPRIISLNLSSSGISGEIDPYIFSLTSIESLDLSNNSLTGLVPDFLAELESLTVLNLSGNNLQGSLPAGLVEKANNRSLS 474 (525)
Q Consensus 395 ~~~L~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~L~g~iP~~l~~l~~l~~l~ 474 (525)
+++|+.|+|+++...+.+| .+..+++|+.|+|++|.....+|..++.+++|+.|++++|..-+.+|..+ ++.+|+.|+
T Consensus 633 l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~ 710 (1153)
T PLN03210 633 LTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLN 710 (1153)
T ss_pred CCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEe
Confidence 3455555555544333444 35555566666666555445556666666666666666543333555544 445555544
Q ss_pred E
Q 040922 475 L 475 (525)
Q Consensus 475 L 475 (525)
+
T Consensus 711 L 711 (1153)
T PLN03210 711 L 711 (1153)
T ss_pred C
Confidence 3
No 34
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=96.61 E-value=0.0013 Score=66.70 Aligned_cols=81 Identities=38% Similarity=0.470 Sum_probs=51.2
Q ss_pred CceEEecCCCCCccCC----CchhhccCCCcCEEEcCCCCCCCc----CchhccCCCCCCEEeCCCCcCCCCCChhhhc-
Q 040922 396 PRIISLNLSSSGISGE----IDPYIFSLTSIESLDLSNNSLTGL----VPDFLAELESLTVLNLSGNNLQGSLPAGLVE- 466 (525)
Q Consensus 396 ~~L~~L~Ls~n~l~g~----ip~~~~~L~~L~~L~Ls~N~l~g~----iP~~l~~l~~L~~L~Ls~N~L~g~iP~~l~~- 466 (525)
++|+.|+|++|.+++. ++..+..+++|+.|+|++|.+.+. +...+..+++|++|++++|.+++.....+..
T Consensus 165 ~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~ 244 (319)
T cd00116 165 RDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASA 244 (319)
T ss_pred CCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHH
Confidence 4677888888887742 333455566788888888877643 3344566777888888888877533333321
Q ss_pred ----CCCCcEEEEE
Q 040922 467 ----KANNRSLSLS 476 (525)
Q Consensus 467 ----l~~l~~l~L~ 476 (525)
..+|+.|+++
T Consensus 245 ~~~~~~~L~~L~l~ 258 (319)
T cd00116 245 LLSPNISLLTLSLS 258 (319)
T ss_pred HhccCCCceEEEcc
Confidence 2456665544
No 35
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=96.55 E-value=0.00025 Score=62.47 Aligned_cols=85 Identities=22% Similarity=0.287 Sum_probs=68.6
Q ss_pred CCceEEecCCCCCccCCCchhhccCCCcCEEEcCCCCCCCcCchhccCCCCCCEEeCCCCcCCCCCChhhhcCCCCcEEE
Q 040922 395 PPRIISLNLSSSGISGEIDPYIFSLTSIESLDLSNNSLTGLVPDFLAELESLTVLNLSGNNLQGSLPAGLVEKANNRSLS 474 (525)
Q Consensus 395 ~~~L~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~L~g~iP~~l~~l~~l~~l~ 474 (525)
++.++.|+|++|.|+ .+|.++..++.|+.|+++.|.|. ..|..+..|.+|-.|+..+|.+. +||-.+.--..+...
T Consensus 76 f~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~dl~~s~~~al~- 151 (177)
T KOG4579|consen 76 FPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDVDLFYSSLPALI- 151 (177)
T ss_pred cchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcHHHhccccHHHH-
Confidence 357889999999999 89999999999999999999999 78888888999999999999998 888775432222222
Q ss_pred EEecCCCCCC
Q 040922 475 LSVERNPNFC 484 (525)
Q Consensus 475 L~l~~N~~~C 484 (525)
.+.++||--
T Consensus 152 -~lgnepl~~ 160 (177)
T KOG4579|consen 152 -KLGNEPLGD 160 (177)
T ss_pred -HhcCCcccc
Confidence 234666644
No 36
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=96.47 E-value=0.0015 Score=66.09 Aligned_cols=81 Identities=27% Similarity=0.399 Sum_probs=59.8
Q ss_pred CceEEecCCCCCccC----CCchhhccC-CCcCEEEcCCCCCCCc----CchhccCCCCCCEEeCCCCcCCCC----CCh
Q 040922 396 PRIISLNLSSSGISG----EIDPYIFSL-TSIESLDLSNNSLTGL----VPDFLAELESLTVLNLSGNNLQGS----LPA 462 (525)
Q Consensus 396 ~~L~~L~Ls~n~l~g----~ip~~~~~L-~~L~~L~Ls~N~l~g~----iP~~l~~l~~L~~L~Ls~N~L~g~----iP~ 462 (525)
++|+.|++++|++.+ .+...+..+ ++|+.|+|++|.+++. ++..+..+++|++|+|++|.+++. ++.
T Consensus 108 ~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~ 187 (319)
T cd00116 108 SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAE 187 (319)
T ss_pred CcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHH
Confidence 459999999998873 233456666 8899999999999843 344567778999999999999853 344
Q ss_pred hhhcCCCCcEEEEE
Q 040922 463 GLVEKANNRSLSLS 476 (525)
Q Consensus 463 ~l~~l~~l~~l~L~ 476 (525)
.+..+.+|+.|+++
T Consensus 188 ~l~~~~~L~~L~L~ 201 (319)
T cd00116 188 GLKANCNLEVLDLN 201 (319)
T ss_pred HHHhCCCCCEEecc
Confidence 45556678887664
No 37
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=96.44 E-value=0.00047 Score=75.14 Aligned_cols=85 Identities=35% Similarity=0.418 Sum_probs=54.3
Q ss_pred CCceEEecCCCCCccCCCchhhccCCCcCEEEcCCCCCCCcCchh----------------------ccCCCCCCEEeCC
Q 040922 395 PPRIISLNLSSSGISGEIDPYIFSLTSIESLDLSNNSLTGLVPDF----------------------LAELESLTVLNLS 452 (525)
Q Consensus 395 ~~~L~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~g~iP~~----------------------l~~l~~L~~L~Ls 452 (525)
++.|+.|||++|+++. .. .+..|+.|++|||+.|+|. .+|.. +.+|.+|+.|||+
T Consensus 186 l~ale~LnLshNk~~~-v~-~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~L~~L~lrnN~l~tL~gie~LksL~~LDls 262 (1096)
T KOG1859|consen 186 LPALESLNLSHNKFTK-VD-NLRRLPKLKHLDLSYNCLR-HVPQLSMVGCKLQLLNLRNNALTTLRGIENLKSLYGLDLS 262 (1096)
T ss_pred HHHhhhhccchhhhhh-hH-HHHhcccccccccccchhc-cccccchhhhhheeeeecccHHHhhhhHHhhhhhhccchh
Confidence 5678999999999983 33 7888999999999999887 45532 3345556666666
Q ss_pred CCcCCCCCC-hhhhcCCCCcEEEEEecCCCCCC
Q 040922 453 GNNLQGSLP-AGLVEKANNRSLSLSVERNPNFC 484 (525)
Q Consensus 453 ~N~L~g~iP-~~l~~l~~l~~l~L~l~~N~~~C 484 (525)
.|-|.+--- .-+..|..|.. |.+.|||.-|
T Consensus 263 yNll~~hseL~pLwsLs~L~~--L~LeGNPl~c 293 (1096)
T KOG1859|consen 263 YNLLSEHSELEPLWSLSSLIV--LWLEGNPLCC 293 (1096)
T ss_pred HhhhhcchhhhHHHHHHHHHH--HhhcCCcccc
Confidence 666553211 11222333332 4577999655
No 38
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=96.43 E-value=0.0049 Score=70.04 Aligned_cols=70 Identities=30% Similarity=0.429 Sum_probs=38.9
Q ss_pred ceEEecCCCCCccCCCchhhccCCCcCEEEcCCCCCCCcCchhccCCCCCCEEeCCCCcCCCCCChhhhcCCCCcEEEE
Q 040922 397 RIISLNLSSSGISGEIDPYIFSLTSIESLDLSNNSLTGLVPDFLAELESLTVLNLSGNNLQGSLPAGLVEKANNRSLSL 475 (525)
Q Consensus 397 ~L~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~L~g~iP~~l~~l~~l~~l~L 475 (525)
+|+.|+|++|+|+ .+|..+. .+|+.|+|++|++. .+|..+. .+|+.|+|++|+|+ .+|..+. .+|+.|++
T Consensus 221 nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~L 290 (754)
T PRK15370 221 NIKTLYANSNQLT-SIPATLP--DTIQEMELSINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSV 290 (754)
T ss_pred CCCEEECCCCccc-cCChhhh--ccccEEECcCCccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEEC
Confidence 4555555555555 3444332 34666666666665 4554443 36777777777777 4666553 24555444
No 39
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=96.42 E-value=0.0024 Score=72.43 Aligned_cols=80 Identities=31% Similarity=0.432 Sum_probs=51.5
Q ss_pred CceEEecCCCCCccCCCchhhccCCCcCEEEcCCCCCCCcCchhccCCCCCCEEeCCCCcCCCCCChhhhcC----CCCc
Q 040922 396 PRIISLNLSSSGISGEIDPYIFSLTSIESLDLSNNSLTGLVPDFLAELESLTVLNLSGNNLQGSLPAGLVEK----ANNR 471 (525)
Q Consensus 396 ~~L~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~L~g~iP~~l~~l----~~l~ 471 (525)
++|+.|+|++|+|+ .+|..+. +.|+.|+|++|+|+ .+|..+. .+|+.|++++|+|+ .+|..+..+ .++.
T Consensus 346 ~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt-~LP~~l~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~ 418 (754)
T PRK15370 346 PELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALT-NLPENLP--AALQIMQASRNNLV-RLPESLPHFRGEGPQPT 418 (754)
T ss_pred CcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCC-CCCHhHH--HHHHHHhhccCCcc-cCchhHHHHhhcCCCcc
Confidence 56777777777777 5665553 57777888888777 4555443 35777788888877 666655332 3333
Q ss_pred EEEEEecCCCCCC
Q 040922 472 SLSLSVERNPNFC 484 (525)
Q Consensus 472 ~l~L~l~~N~~~C 484 (525)
. +.+++||...
T Consensus 419 ~--L~L~~Npls~ 429 (754)
T PRK15370 419 R--IIVEYNPFSE 429 (754)
T ss_pred E--EEeeCCCccH
Confidence 3 4566787653
No 40
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=96.34 E-value=0.0014 Score=68.96 Aligned_cols=64 Identities=34% Similarity=0.569 Sum_probs=34.8
Q ss_pred ceEEecCCCCCccCCCchhhccCCCcCEEEcCCCCCCCcCchhccCCCCCCEEeCCCCcCCCCCChh
Q 040922 397 RIISLNLSSSGISGEIDPYIFSLTSIESLDLSNNSLTGLVPDFLAELESLTVLNLSGNNLQGSLPAG 463 (525)
Q Consensus 397 ~L~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~L~g~iP~~ 463 (525)
+|+.|+++.|++. .+|..+..++.|+.|++++|++. .+|...+.++.|+.|++++|+++ .+|..
T Consensus 141 nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~ 204 (394)
T COG4886 141 NLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPE 204 (394)
T ss_pred hcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhheeccCCccc-cCchh
Confidence 4555555555555 44445555555555555555555 44444445555555555555555 45544
No 41
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=96.34 E-value=0.0013 Score=64.86 Aligned_cols=73 Identities=33% Similarity=0.401 Sum_probs=35.4
Q ss_pred eEEecCCCCCccCCCchhhccCCCcCEEEcCCCCCCCcCchhccCCCCCCEEeCCCCcCCCCCChhhhcCCCCcEEE
Q 040922 398 IISLNLSSSGISGEIDPYIFSLTSIESLDLSNNSLTGLVPDFLAELESLTVLNLSGNNLQGSLPAGLVEKANNRSLS 474 (525)
Q Consensus 398 L~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~L~g~iP~~l~~l~~l~~l~ 474 (525)
|+.++||+|.|+ .+..+..-++.++.|++|+|.+. .+-. ++.|++|++||||+|.|+ .+-.+-.+|.+.+.|.
T Consensus 286 LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~-~v~n-La~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~ 358 (490)
T KOG1259|consen 286 LTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIR-TVQN-LAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLK 358 (490)
T ss_pred hhhccccccchh-hhhhhhhhccceeEEecccccee-eehh-hhhcccceEeecccchhH-hhhhhHhhhcCEeeee
Confidence 445555555555 44455555555555555555554 2222 445555555555555555 3333333444444433
No 42
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=96.29 E-value=0.0066 Score=72.85 Aligned_cols=67 Identities=31% Similarity=0.370 Sum_probs=34.2
Q ss_pred CCceEEecCCCCCccCCCchhhccCCCcCEEEcCCCCCCCcCchhccCCCCCCEEeCCCCcCCCCCCh
Q 040922 395 PPRIISLNLSSSGISGEIDPYIFSLTSIESLDLSNNSLTGLVPDFLAELESLTVLNLSGNNLQGSLPA 462 (525)
Q Consensus 395 ~~~L~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~L~g~iP~ 462 (525)
+++|+.|+|++|..-..+|..+.+|++|+.|++++|..-..+|..+ .+++|+.|+|++|...+.+|.
T Consensus 656 l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~ 722 (1153)
T PLN03210 656 ATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPD 722 (1153)
T ss_pred CCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCcccccc
Confidence 3455555555554434555555555555555555543333445443 455555555555544434443
No 43
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=96.17 E-value=0.0032 Score=66.22 Aligned_cols=78 Identities=37% Similarity=0.519 Sum_probs=67.4
Q ss_pred CceEEecCCCCCccCCCchhhccCC-CcCEEEcCCCCCCCcCchhccCCCCCCEEeCCCCcCCCCCChhhhcCCCCcEEE
Q 040922 396 PRIISLNLSSSGISGEIDPYIFSLT-SIESLDLSNNSLTGLVPDFLAELESLTVLNLSGNNLQGSLPAGLVEKANNRSLS 474 (525)
Q Consensus 396 ~~L~~L~Ls~n~l~g~ip~~~~~L~-~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~L~g~iP~~l~~l~~l~~l~ 474 (525)
+.++.|++.+|.++ .+++....+. +|+.|++++|++. .+|..++.+++|+.|++++|+++ .+|...+.+..|+.|+
T Consensus 116 ~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~ 192 (394)
T COG4886 116 TNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLD 192 (394)
T ss_pred cceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhhee
Confidence 57899999999999 8888888885 9999999999999 78788899999999999999999 8888766666666555
Q ss_pred EE
Q 040922 475 LS 476 (525)
Q Consensus 475 L~ 476 (525)
++
T Consensus 193 ls 194 (394)
T COG4886 193 LS 194 (394)
T ss_pred cc
Confidence 43
No 44
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=96.13 E-value=0.003 Score=72.91 Aligned_cols=84 Identities=30% Similarity=0.388 Sum_probs=71.9
Q ss_pred CceEEecCCCCC--ccCCCchhhccCCCcCEEEcCCCCCCCcCchhccCCCCCCEEeCCCCcCCCCCChhhhcCCCCcEE
Q 040922 396 PRIISLNLSSSG--ISGEIDPYIFSLTSIESLDLSNNSLTGLVPDFLAELESLTVLNLSGNNLQGSLPAGLVEKANNRSL 473 (525)
Q Consensus 396 ~~L~~L~Ls~n~--l~g~ip~~~~~L~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~L~g~iP~~l~~l~~l~~l 473 (525)
+.|++|-+..|. +.......|..++.|+.|||++|.=-+.+|..++.|-+|++|+|++..++ .+|..+.+|.+|.+|
T Consensus 545 ~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~L 623 (889)
T KOG4658|consen 545 PKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYL 623 (889)
T ss_pred CccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhhee
Confidence 468888888886 44333444888999999999998887899999999999999999999999 999999999999998
Q ss_pred EEEecCC
Q 040922 474 SLSVERN 480 (525)
Q Consensus 474 ~L~l~~N 480 (525)
++...+.
T Consensus 624 nl~~~~~ 630 (889)
T KOG4658|consen 624 NLEVTGR 630 (889)
T ss_pred ccccccc
Confidence 8876554
No 45
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=95.83 E-value=0.0016 Score=69.50 Aligned_cols=79 Identities=28% Similarity=0.366 Sum_probs=61.4
Q ss_pred ceEEecCCCCCccCCCchhhccCCCcCEEEcCCCCCCCcCchhccCCCCCCEEeCCCCcCCCCCChhhhcCCCCcEEEEE
Q 040922 397 RIISLNLSSSGISGEIDPYIFSLTSIESLDLSNNSLTGLVPDFLAELESLTVLNLSGNNLQGSLPAGLVEKANNRSLSLS 476 (525)
Q Consensus 397 ~L~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~L~g~iP~~l~~l~~l~~l~L~ 476 (525)
-|+.|-+++|+++ .+|.+++.+..|..||.+.|++. .+|..++.+.+|+.|.+..|++. .+|.++..|+ .+.|+
T Consensus 144 pLkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~Lp---Li~lD 217 (722)
T KOG0532|consen 144 PLKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSLP---LIRLD 217 (722)
T ss_pred cceeEEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCCc---eeeee
Confidence 4677788888887 78888888888888888888888 78888888888888888888888 7888877554 55556
Q ss_pred ecCCC
Q 040922 477 VERNP 481 (525)
Q Consensus 477 l~~N~ 481 (525)
++.|.
T Consensus 218 fScNk 222 (722)
T KOG0532|consen 218 FSCNK 222 (722)
T ss_pred cccCc
Confidence 55554
No 46
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=94.88 E-value=0.0037 Score=68.46 Aligned_cols=62 Identities=31% Similarity=0.404 Sum_probs=53.4
Q ss_pred ceEEecCCCCCccCCCchhhccCCCcCEEEcCCCCCCCcCchhccCCCCCCEEeCCCCcCCCCCCh
Q 040922 397 RIISLNLSSSGISGEIDPYIFSLTSIESLDLSNNSLTGLVPDFLAELESLTVLNLSGNNLQGSLPA 462 (525)
Q Consensus 397 ~L~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~L~g~iP~ 462 (525)
.|...+.+.|.|. .+..++.-++.|+.|||++|++.... .+..|+.|++|||+.|.|. .+|.
T Consensus 165 ~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~-~vp~ 226 (1096)
T KOG1859|consen 165 KLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLR-HVPQ 226 (1096)
T ss_pred hHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhc-cccc
Confidence 4667788888888 78888999999999999999998433 8889999999999999998 6663
No 47
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=94.54 E-value=0.026 Score=39.47 Aligned_cols=33 Identities=36% Similarity=0.907 Sum_probs=23.5
Q ss_pred hhhHHHHHHhhhhcc-----cCCCCC----CCCCCCcccccccccCC
Q 040922 352 QQDVDAITNIKSKYE-----VKRDWQ----GDPCTPKVHLWQGLNCS 389 (525)
Q Consensus 352 ~~d~~al~~l~~~~~-----~~~~w~----g~pc~p~~~~w~gv~c~ 389 (525)
+.|..+|..+|..+. ...+|+ .+|| .|.||.|+
T Consensus 2 ~~d~~aLl~~k~~l~~~~~~~l~~W~~~~~~~~C-----~W~GV~Cd 43 (43)
T PF08263_consen 2 NQDRQALLAFKKSLNNDPSGVLSSWNPSSDSDPC-----SWSGVTCD 43 (43)
T ss_dssp HHHHHHHHHHHHCTT-SC-CCCTT--TT--S-CC-----CSTTEEE-
T ss_pred cHHHHHHHHHHHhcccccCcccccCCCcCCCCCe-----eeccEEeC
Confidence 568999999998876 256896 3677 79999995
No 48
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=94.26 E-value=0.064 Score=50.54 Aligned_cols=81 Identities=25% Similarity=0.318 Sum_probs=59.5
Q ss_pred CceEEecCCCCCccCCCchhhccCCCcCEEEcCCCCCCCcCchhccCCCCCCEEeCCCCcCCCCCCh--hhhcCCCCcEE
Q 040922 396 PRIISLNLSSSGISGEIDPYIFSLTSIESLDLSNNSLTGLVPDFLAELESLTVLNLSGNNLQGSLPA--GLVEKANNRSL 473 (525)
Q Consensus 396 ~~L~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~L~g~iP~--~l~~l~~l~~l 473 (525)
.+...++|++|.+.. -+.|..++.|..|.|++|+++..-|.--..+++|+.|.|.+|.|. .+-+ .+..+++|+.|
T Consensus 42 d~~d~iDLtdNdl~~--l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~-~l~dl~pLa~~p~L~~L 118 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRK--LDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQ-ELGDLDPLASCPKLEYL 118 (233)
T ss_pred cccceecccccchhh--cccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchh-hhhhcchhccCCcccee
Confidence 466789999999862 246888999999999999999766666666788999999999987 2221 23445555554
Q ss_pred EEEecCCC
Q 040922 474 SLSVERNP 481 (525)
Q Consensus 474 ~L~l~~N~ 481 (525)
.+-+||
T Consensus 119 --tll~Np 124 (233)
T KOG1644|consen 119 --TLLGNP 124 (233)
T ss_pred --eecCCc
Confidence 344776
No 49
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=94.20 E-value=0.032 Score=54.39 Aligned_cols=77 Identities=29% Similarity=0.358 Sum_probs=56.1
Q ss_pred CceEEecCCCCCccCCCchhhccCCCcCEEEcCCC--CCCCcCchhccCCCCCCEEeCCCCcCCCCCChhh---hcCCCC
Q 040922 396 PRIISLNLSSSGISGEIDPYIFSLTSIESLDLSNN--SLTGLVPDFLAELESLTVLNLSGNNLQGSLPAGL---VEKANN 470 (525)
Q Consensus 396 ~~L~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N--~l~g~iP~~l~~l~~L~~L~Ls~N~L~g~iP~~l---~~l~~l 470 (525)
..|+.|.+.+..++.. ..+..|++|+.|++|.| +..+.++.....+++|++|+|++|++. ++..+ ..+.+|
T Consensus 43 ~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~--~lstl~pl~~l~nL 118 (260)
T KOG2739|consen 43 VELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK--DLSTLRPLKELENL 118 (260)
T ss_pred cchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc--cccccchhhhhcch
Confidence 3566666777666522 35778889999999999 777778877788899999999999987 24443 445556
Q ss_pred cEEEEE
Q 040922 471 RSLSLS 476 (525)
Q Consensus 471 ~~l~L~ 476 (525)
..|++.
T Consensus 119 ~~Ldl~ 124 (260)
T KOG2739|consen 119 KSLDLF 124 (260)
T ss_pred hhhhcc
Confidence 666554
No 50
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=93.90 E-value=0.022 Score=33.73 Aligned_cols=11 Identities=73% Similarity=0.854 Sum_probs=4.3
Q ss_pred CEEEcCCCCCC
Q 040922 423 ESLDLSNNSLT 433 (525)
Q Consensus 423 ~~L~Ls~N~l~ 433 (525)
+.|||++|+|+
T Consensus 3 ~~Ldls~n~l~ 13 (22)
T PF00560_consen 3 EYLDLSGNNLT 13 (22)
T ss_dssp SEEEETSSEES
T ss_pred cEEECCCCcCE
Confidence 33333333333
No 51
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=93.82 E-value=0.017 Score=34.23 Aligned_cols=21 Identities=48% Similarity=0.798 Sum_probs=18.3
Q ss_pred CCCEEeCCCCcCCCCCChhhhc
Q 040922 445 SLTVLNLSGNNLQGSLPAGLVE 466 (525)
Q Consensus 445 ~L~~L~Ls~N~L~g~iP~~l~~ 466 (525)
+|++|||++|+|+ .+|+++++
T Consensus 1 ~L~~Ldls~n~l~-~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLT-SIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEES-EEGTTTTT
T ss_pred CccEEECCCCcCE-eCChhhcC
Confidence 5899999999999 89988654
No 52
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=93.24 E-value=0.041 Score=58.53 Aligned_cols=79 Identities=34% Similarity=0.429 Sum_probs=46.4
Q ss_pred CCceEEecCCCCCccCCCchhhccCCCcCEEEcCCCCCCCcCchhccCCCCCCEEeCCCCcCCCCCChhhhcCCCCcEEE
Q 040922 395 PPRIISLNLSSSGISGEIDPYIFSLTSIESLDLSNNSLTGLVPDFLAELESLTVLNLSGNNLQGSLPAGLVEKANNRSLS 474 (525)
Q Consensus 395 ~~~L~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~L~g~iP~~l~~l~~l~~l~ 474 (525)
...+..|++..|+|. .+...+..+.+|+.|+|++|.|....+ +..++.|+.|++++|.++ .+. .+..+..|+.++
T Consensus 94 ~~~l~~l~l~~n~i~-~i~~~l~~~~~L~~L~ls~N~I~~i~~--l~~l~~L~~L~l~~N~i~-~~~-~~~~l~~L~~l~ 168 (414)
T KOG0531|consen 94 LKSLEALDLYDNKIE-KIENLLSSLVNLQVLDLSFNKITKLEG--LSTLTLLKELNLSGNLIS-DIS-GLESLKSLKLLD 168 (414)
T ss_pred ccceeeeeccccchh-hcccchhhhhcchheeccccccccccc--hhhccchhhheeccCcch-hcc-CCccchhhhccc
Confidence 356777777777776 343336667777777777777764433 235555777777777776 222 222244445555
Q ss_pred EEec
Q 040922 475 LSVE 478 (525)
Q Consensus 475 L~l~ 478 (525)
++.+
T Consensus 169 l~~n 172 (414)
T KOG0531|consen 169 LSYN 172 (414)
T ss_pred CCcc
Confidence 4433
No 53
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=92.24 E-value=0.22 Score=34.15 Aligned_cols=22 Identities=23% Similarity=0.256 Sum_probs=13.3
Q ss_pred CceEEEEEehHHHHHHHHHHHH
Q 040922 493 NNRFIVPVLASVVTFSVFLAAL 514 (525)
Q Consensus 493 ~~~~~i~v~~~~~~~~~~~~~~ 514 (525)
..++.++|+++++++.++++++
T Consensus 10 ~vaIa~~VvVPV~vI~~vl~~~ 31 (40)
T PF08693_consen 10 TVAIAVGVVVPVGVIIIVLGAF 31 (40)
T ss_pred eEEEEEEEEechHHHHHHHHHH
Confidence 3447777777777665554433
No 54
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=92.14 E-value=0.14 Score=45.77 Aligned_cols=33 Identities=21% Similarity=0.292 Sum_probs=18.4
Q ss_pred CCceEEEEEehHHHHHHHHHHHHH-HhheeeccC
Q 040922 492 KNNRFIVPVLASVVTFSVFLAALV-ILQHLRRRK 524 (525)
Q Consensus 492 ~~~~~~i~v~~~~~~~~~~~~~~~-~~~~~~~~~ 524 (525)
|.+.++|+|+|++.+.++++++++ ++||.|+||
T Consensus 46 knknIVIGvVVGVGg~ill~il~lvf~~c~r~kk 79 (154)
T PF04478_consen 46 KNKNIVIGVVVGVGGPILLGILALVFIFCIRRKK 79 (154)
T ss_pred CCccEEEEEEecccHHHHHHHHHhheeEEEeccc
Confidence 334488999998766555443333 334434443
No 55
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.04 E-value=0.051 Score=54.04 Aligned_cols=73 Identities=27% Similarity=0.465 Sum_probs=50.1
Q ss_pred cccccCCCCCCCCCceEEecCCCCCccCCCchhhccCCCcCEEEcCCCCCCC-cCchhccCCCCCCEEeCCCCcCC
Q 040922 383 WQGLNCSYDDNQPPRIISLNLSSSGISGEIDPYIFSLTSIESLDLSNNSLTG-LVPDFLAELESLTVLNLSGNNLQ 457 (525)
Q Consensus 383 w~gv~c~~~~~~~~~L~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~g-~iP~~l~~l~~L~~L~Ls~N~L~ 457 (525)
|+-+.|--. ++|+|+.|+|+.|.+...|-..-..+.+|+.|-|.+..|.= .....+..++.++.|++|.|.+.
T Consensus 86 WseI~~ile--~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~r 159 (418)
T KOG2982|consen 86 WSEIGAILE--QLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLR 159 (418)
T ss_pred HHHHHHHHh--cCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhh
Confidence 666665433 57889999999998885544332456678888888876652 34455667788888888888543
No 56
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=90.85 E-value=0.16 Score=49.69 Aligned_cols=62 Identities=27% Similarity=0.415 Sum_probs=49.5
Q ss_pred CCceEEecCCCC--CccCCCchhhccCCCcCEEEcCCCCCCCcCchh---ccCCCCCCEEeCCCCcCCC
Q 040922 395 PPRIISLNLSSS--GISGEIDPYIFSLTSIESLDLSNNSLTGLVPDF---LAELESLTVLNLSGNNLQG 458 (525)
Q Consensus 395 ~~~L~~L~Ls~n--~l~g~ip~~~~~L~~L~~L~Ls~N~l~g~iP~~---l~~l~~L~~L~Ls~N~L~g 458 (525)
++.|+.|.+|.| ++.+.++.....+++|++|+|++|++.- +.+ +..+.+|..|++.+|.-+.
T Consensus 64 Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~--lstl~pl~~l~nL~~Ldl~n~~~~~ 130 (260)
T KOG2739|consen 64 LPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD--LSTLRPLKELENLKSLDLFNCSVTN 130 (260)
T ss_pred cchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc--ccccchhhhhcchhhhhcccCCccc
Confidence 568999999999 7777777777788999999999999883 333 3456778899998887764
No 57
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=90.82 E-value=0.0086 Score=57.36 Aligned_cols=81 Identities=20% Similarity=0.252 Sum_probs=64.2
Q ss_pred CceEEecCCCCCccCCCchhhccCCCcCEEEcCCCCCCCcCchhccCCCCCCEEeCCCCcCCCCCChhhhcCCCCcEEEE
Q 040922 396 PRIISLNLSSSGISGEIDPYIFSLTSIESLDLSNNSLTGLVPDFLAELESLTVLNLSGNNLQGSLPAGLVEKANNRSLSL 475 (525)
Q Consensus 396 ~~L~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~L~g~iP~~l~~l~~l~~l~L 475 (525)
.+++.||++.|++- .+-..|..++.|..|+++.|++. .+|..++++..+.++++.+|.++ ..|.+.++++.++.+++
T Consensus 42 kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~ 118 (326)
T KOG0473|consen 42 KRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQ 118 (326)
T ss_pred ceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhh
Confidence 57888899888876 55567778888888899988888 78888888888888888888888 78888888776665543
Q ss_pred EecCCC
Q 040922 476 SVERNP 481 (525)
Q Consensus 476 ~l~~N~ 481 (525)
. +|+
T Consensus 119 k--~~~ 122 (326)
T KOG0473|consen 119 K--KTE 122 (326)
T ss_pred c--cCc
Confidence 3 555
No 58
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=90.26 E-value=0.16 Score=28.04 Aligned_cols=13 Identities=46% Similarity=0.657 Sum_probs=5.5
Q ss_pred CCCEEeCCCCcCC
Q 040922 445 SLTVLNLSGNNLQ 457 (525)
Q Consensus 445 ~L~~L~Ls~N~L~ 457 (525)
+|+.|+|++|+|+
T Consensus 2 ~L~~L~l~~n~L~ 14 (17)
T PF13504_consen 2 NLRTLDLSNNRLT 14 (17)
T ss_dssp T-SEEEETSS--S
T ss_pred ccCEEECCCCCCC
Confidence 4555555555554
No 59
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=89.89 E-value=0.12 Score=55.05 Aligned_cols=80 Identities=30% Similarity=0.339 Sum_probs=58.8
Q ss_pred CceEEecCCCCCccCCCchhhccCCCcCEEEcCCCCCCCcCchhccCCCCCCEEeCCCCcCCCCCChhhhcCCCCcEEEE
Q 040922 396 PRIISLNLSSSGISGEIDPYIFSLTSIESLDLSNNSLTGLVPDFLAELESLTVLNLSGNNLQGSLPAGLVEKANNRSLSL 475 (525)
Q Consensus 396 ~~L~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~L~g~iP~~l~~l~~l~~l~L 475 (525)
..+..+++..|.+. .+-..+..+.+|+.|++..|++. .+...+..+++|++|+|++|+++...+ +..+..|+.|++
T Consensus 72 ~~l~~l~l~~n~i~-~~~~~l~~~~~l~~l~l~~n~i~-~i~~~l~~~~~L~~L~ls~N~I~~i~~--l~~l~~L~~L~l 147 (414)
T KOG0531|consen 72 TSLKELNLRQNLIA-KILNHLSKLKSLEALDLYDNKIE-KIENLLSSLVNLQVLDLSFNKITKLEG--LSTLTLLKELNL 147 (414)
T ss_pred HhHHhhccchhhhh-hhhcccccccceeeeeccccchh-hcccchhhhhcchheeccccccccccc--hhhccchhhhee
Confidence 45666778888877 44556888999999999999999 444447889999999999999984433 334444555544
Q ss_pred EecCCC
Q 040922 476 SVERNP 481 (525)
Q Consensus 476 ~l~~N~ 481 (525)
.+|+
T Consensus 148 --~~N~ 151 (414)
T KOG0531|consen 148 --SGNL 151 (414)
T ss_pred --ccCc
Confidence 4665
No 60
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=89.57 E-value=0.36 Score=29.57 Aligned_cols=21 Identities=52% Similarity=0.751 Sum_probs=13.5
Q ss_pred CCCCCEEeCCCCcCCCCCChhh
Q 040922 443 LESLTVLNLSGNNLQGSLPAGL 464 (525)
Q Consensus 443 l~~L~~L~Ls~N~L~g~iP~~l 464 (525)
|++|+.|+|++|+|+ .+|...
T Consensus 1 L~~L~~L~L~~N~l~-~lp~~~ 21 (26)
T smart00369 1 LPNLRELDLSNNQLS-SLPPGA 21 (26)
T ss_pred CCCCCEEECCCCcCC-cCCHHH
Confidence 356677777777776 566554
No 61
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=89.57 E-value=0.36 Score=29.57 Aligned_cols=21 Identities=52% Similarity=0.751 Sum_probs=13.5
Q ss_pred CCCCCEEeCCCCcCCCCCChhh
Q 040922 443 LESLTVLNLSGNNLQGSLPAGL 464 (525)
Q Consensus 443 l~~L~~L~Ls~N~L~g~iP~~l 464 (525)
|++|+.|+|++|+|+ .+|...
T Consensus 1 L~~L~~L~L~~N~l~-~lp~~~ 21 (26)
T smart00370 1 LPNLRELDLSNNQLS-SLPPGA 21 (26)
T ss_pred CCCCCEEECCCCcCC-cCCHHH
Confidence 356677777777776 566554
No 62
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=89.22 E-value=0.38 Score=45.44 Aligned_cols=80 Identities=29% Similarity=0.282 Sum_probs=57.9
Q ss_pred CCceEEecCCCCCccCCCchhhccCCCcCEEEcCCCCCCCcC-chhccCCCCCCEEeCCCCcCCCCCCh----hhhcCCC
Q 040922 395 PPRIISLNLSSSGISGEIDPYIFSLTSIESLDLSNNSLTGLV-PDFLAELESLTVLNLSGNNLQGSLPA----GLVEKAN 469 (525)
Q Consensus 395 ~~~L~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~g~i-P~~l~~l~~L~~L~Ls~N~L~g~iP~----~l~~l~~ 469 (525)
+++|..|.|++|+|+..-|.--..++.|+.|.|.+|.|.-.- -.-+..++.|++|.+-+|..+ .-.. .+..+++
T Consensus 63 l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~-~k~~YR~yvl~klp~ 141 (233)
T KOG1644|consen 63 LPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPVE-HKKNYRLYVLYKLPS 141 (233)
T ss_pred ccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCCchh-cccCceeEEEEecCc
Confidence 578999999999999444444445678999999999987321 134567899999999999887 2222 2456677
Q ss_pred CcEEEE
Q 040922 470 NRSLSL 475 (525)
Q Consensus 470 l~~l~L 475 (525)
|+.|+.
T Consensus 142 l~~LDF 147 (233)
T KOG1644|consen 142 LRTLDF 147 (233)
T ss_pred ceEeeh
Confidence 777664
No 63
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=88.82 E-value=0.26 Score=55.68 Aligned_cols=61 Identities=26% Similarity=0.281 Sum_probs=29.6
Q ss_pred CCceEEecCCCCCccCCCchhhccCCCcCEEEcCCCCCCC-cCchhccCCCCCCEEeCCCCcCC
Q 040922 395 PPRIISLNLSSSGISGEIDPYIFSLTSIESLDLSNNSLTG-LVPDFLAELESLTVLNLSGNNLQ 457 (525)
Q Consensus 395 ~~~L~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~g-~iP~~l~~l~~L~~L~Ls~N~L~ 457 (525)
.++|..||+|+.+++.. ..+++|++|+.|-+.+=.+.. ..=..+-.|++|++||+|..+..
T Consensus 172 FpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~ 233 (699)
T KOG3665|consen 172 FPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNN 233 (699)
T ss_pred cCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccc
Confidence 35555555555555422 345555555555555444431 11123444556666666544443
No 64
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=88.54 E-value=0.36 Score=50.52 Aligned_cols=63 Identities=25% Similarity=0.427 Sum_probs=45.5
Q ss_pred CCCceEEecCCCCCccCCCc--hhhccCCCcCEEEcCCCCCCCc-Cchh-----ccCCCCCCEEeCCCCcCC
Q 040922 394 QPPRIISLNLSSSGISGEID--PYIFSLTSIESLDLSNNSLTGL-VPDF-----LAELESLTVLNLSGNNLQ 457 (525)
Q Consensus 394 ~~~~L~~L~Ls~n~l~g~ip--~~~~~L~~L~~L~Ls~N~l~g~-iP~~-----l~~l~~L~~L~Ls~N~L~ 457 (525)
.+..|+.|+|++|++- ..+ .-.+.|+.|+.|+++.+.+... +|+. ...+++|++|+++.|++.
T Consensus 244 i~~~L~~LdLs~N~li-~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~ 314 (505)
T KOG3207|consen 244 ILQTLQELDLSNNNLI-DFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIR 314 (505)
T ss_pred hhhHHhhccccCCccc-ccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccc
Confidence 3567888899888876 333 4467788888888888877642 3333 345688999999999885
No 65
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=88.40 E-value=0.1 Score=54.43 Aligned_cols=83 Identities=27% Similarity=0.238 Sum_probs=57.3
Q ss_pred CceEEecCCCCCccCCCchhhccCCCcCEEEcCCCCCCCcCc--hhccCCCCCCEEeCCCCcCCC-CCChh-----hhcC
Q 040922 396 PRIISLNLSSSGISGEIDPYIFSLTSIESLDLSNNSLTGLVP--DFLAELESLTVLNLSGNNLQG-SLPAG-----LVEK 467 (525)
Q Consensus 396 ~~L~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~g~iP--~~l~~l~~L~~L~Ls~N~L~g-~iP~~-----l~~l 467 (525)
+.|..|+|..|...+.-..+...+..|+.|||++|++. ..+ ...+.++.|+.|+++.+.+.. .+|+. ...+
T Consensus 222 Psl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li-~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f 300 (505)
T KOG3207|consen 222 PSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLI-DFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTF 300 (505)
T ss_pred CcHHHhhhhcccccceecchhhhhhHHhhccccCCccc-ccccccccccccchhhhhccccCcchhcCCCccchhhhccc
Confidence 67888999888644344445666788999999999987 344 456778899999999888863 23333 3445
Q ss_pred CCCcEEEEEecCCC
Q 040922 468 ANNRSLSLSVERNP 481 (525)
Q Consensus 468 ~~l~~l~L~l~~N~ 481 (525)
.+|+.|+++ .|+
T Consensus 301 ~kL~~L~i~--~N~ 312 (505)
T KOG3207|consen 301 PKLEYLNIS--ENN 312 (505)
T ss_pred ccceeeecc--cCc
Confidence 566666654 554
No 66
>PF01299 Lamp: Lysosome-associated membrane glycoprotein (Lamp); InterPro: IPR002000 Lysosome-associated membrane glycoproteins (lamp) [] are integral membrane proteins, specific to lysosomes, and whose exact biological function is not yet clear. Structurally, the lamp proteins consist of two internally homologous lysosome-luminal domains separated by a proline-rich hinge region; at the C-terminal extremity there is a transmembrane region (TM) followed by a very short cytoplasmic tail (C). In each of the duplicated domains, there are two conserved disulphide bonds. This structure is schematically represented in the figure below. +-----+ +-----+ +-----+ +-----+ | | | | | | | | xCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxxxCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxx +--------------------------++Hinge++--------------------------++TM++C+ In mammals, there are two closely related types of lamp: lamp-1 and lamp-2, which form major components of the lysosome membrane. In chicken lamp-1 is known as LEP100. Also included in this entry is the macrophage protein CD68 (or macrosialin) [] is a heavily glycosylated integral membrane protein whose structure consists of a mucin-like domain followed by a proline-rich hinge; a single lamp-like domain; a transmembrane region and a short cytoplasmic tail. Similar to CD68, mammalian lamp-3, which is expressed in lymphoid organs, dendritic cells and in lung, contains all the C-terminal regions but lacks the N-terminal lamp-like region []. In a lamp-family protein from nematodes [] only the part C-terminal to the hinge is conserved. ; GO: 0016020 membrane
Probab=86.31 E-value=0.78 Score=46.72 Aligned_cols=48 Identities=23% Similarity=0.398 Sum_probs=29.5
Q ss_pred EecCCCCCCCCCccCCCCceEEEEEehHHHHHHHHHHHHHHhheeeccC
Q 040922 476 SVERNPNFCLSDSCKKKNNRFIVPVLASVVTFSVFLAALVILQHLRRRK 524 (525)
Q Consensus 476 ~l~~N~~~C~~~~c~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~ 524 (525)
.+.++. .-....|..-....+|+|+|+++++.+++++++.++|.|||+
T Consensus 252 ~~~~~~-Fg~a~~C~~D~~~~~vPIaVG~~La~lvlivLiaYli~Rrr~ 299 (306)
T PF01299_consen 252 RVKNNT-FGTAEECSSDDTSDLVPIAVGAALAGLVLIVLIAYLIGRRRS 299 (306)
T ss_pred EecCCC-CCChhcCCcCCccchHHHHHHHHHHHHHHHHHHhheeEeccc
Confidence 344444 233346754332478999888888777777776666655553
No 67
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.17 E-value=0.32 Score=48.53 Aligned_cols=81 Identities=28% Similarity=0.370 Sum_probs=59.2
Q ss_pred CceEEecCCCCCccC--CCchhhccCCCcCEEEcCCCCCCCcCchhccCCCCCCEEeCCCCcCCCCCCh-hhhcCCCCcE
Q 040922 396 PRIISLNLSSSGISG--EIDPYIFSLTSIESLDLSNNSLTGLVPDFLAELESLTVLNLSGNNLQGSLPA-GLVEKANNRS 472 (525)
Q Consensus 396 ~~L~~L~Ls~n~l~g--~ip~~~~~L~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~L~g~iP~-~l~~l~~l~~ 472 (525)
.+++.|+|.+|.|+. .+-.-+.+|+.|+.|+|+.|+|...|-..-..+.+|+.|-|.+..|...--. .+..++.++.
T Consensus 71 ~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vte 150 (418)
T KOG2982|consen 71 TDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTE 150 (418)
T ss_pred hhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhh
Confidence 578999999999982 3444567899999999999999865554446778999999988887644333 3345555555
Q ss_pred EEEE
Q 040922 473 LSLS 476 (525)
Q Consensus 473 l~L~ 476 (525)
|.++
T Consensus 151 lHmS 154 (418)
T KOG2982|consen 151 LHMS 154 (418)
T ss_pred hhhc
Confidence 5444
No 68
>PF15102 TMEM154: TMEM154 protein family
Probab=84.98 E-value=1.1 Score=39.88 Aligned_cols=28 Identities=21% Similarity=0.482 Sum_probs=12.8
Q ss_pred EEEEEehH-HHHHHHHHHHHHHhheeecc
Q 040922 496 FIVPVLAS-VVTFSVFLAALVILQHLRRR 523 (525)
Q Consensus 496 ~~i~v~~~-~~~~~~~~~~~~~~~~~~~~ 523 (525)
+++.|+++ ++++++++++++++++.|||
T Consensus 57 fiLmIlIP~VLLvlLLl~vV~lv~~~kRk 85 (146)
T PF15102_consen 57 FILMILIPLVLLVLLLLSVVCLVIYYKRK 85 (146)
T ss_pred eEEEEeHHHHHHHHHHHHHHHheeEEeec
Confidence 45555555 34434444444444444444
No 69
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=82.34 E-value=1 Score=57.11 Aligned_cols=34 Identities=21% Similarity=0.399 Sum_probs=18.2
Q ss_pred eCCCCcCCCCCChh-hhcCCCCcEEEEEecCCCCCCCC
Q 040922 450 NLSGNNLQGSLPAG-LVEKANNRSLSLSVERNPNFCLS 486 (525)
Q Consensus 450 ~Ls~N~L~g~iP~~-l~~l~~l~~l~L~l~~N~~~C~~ 486 (525)
||++|+|+ .||.. +..+.+|+.|+ |.+|||.|+|
T Consensus 1 DLSnN~Ls-tLp~g~F~~L~sL~~Ld--LsgNPw~CDC 35 (2740)
T TIGR00864 1 DISNNKIS-TIEEGICANLCNLSEID--LSGNPFECDC 35 (2740)
T ss_pred CCCCCcCC-ccChHHhccCCCceEEE--eeCCcccccc
Confidence 45566666 44433 33455555443 3467777776
No 70
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=82.03 E-value=1.3 Score=27.01 Aligned_cols=17 Identities=53% Similarity=0.804 Sum_probs=12.5
Q ss_pred CCCcCEEEcCCCCCCCc
Q 040922 419 LTSIESLDLSNNSLTGL 435 (525)
Q Consensus 419 L~~L~~L~Ls~N~l~g~ 435 (525)
|++|+.|+|++|+|+..
T Consensus 1 L~~L~~L~L~~N~l~~l 17 (26)
T smart00370 1 LPNLRELDLSNNQLSSL 17 (26)
T ss_pred CCCCCEEECCCCcCCcC
Confidence 46778888888888843
No 71
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=82.03 E-value=1.3 Score=27.01 Aligned_cols=17 Identities=53% Similarity=0.804 Sum_probs=12.5
Q ss_pred CCCcCEEEcCCCCCCCc
Q 040922 419 LTSIESLDLSNNSLTGL 435 (525)
Q Consensus 419 L~~L~~L~Ls~N~l~g~ 435 (525)
|++|+.|+|++|+|+..
T Consensus 1 L~~L~~L~L~~N~l~~l 17 (26)
T smart00369 1 LPNLRELDLSNNQLSSL 17 (26)
T ss_pred CCCCCEEECCCCcCCcC
Confidence 46778888888888843
No 72
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=81.23 E-value=0.64 Score=52.65 Aligned_cols=89 Identities=21% Similarity=0.313 Sum_probs=69.3
Q ss_pred CCCceEEecCCCCCccCC-CchhhccCCCcCEEEcCCCCCCCcCchhccCCCCCCEEeCCCCcCCC-CCChhhhcCCCCc
Q 040922 394 QPPRIISLNLSSSGISGE-IDPYIFSLTSIESLDLSNNSLTGLVPDFLAELESLTVLNLSGNNLQG-SLPAGLVEKANNR 471 (525)
Q Consensus 394 ~~~~L~~L~Ls~n~l~g~-ip~~~~~L~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~L~g-~iP~~l~~l~~l~ 471 (525)
.+|.|++|.+++-.+... .-....++++|..||+|+-+++.. ..++.|++|+.|.+.+=.+.. ..-..+++|.+|+
T Consensus 146 ~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~ 223 (699)
T KOG3665|consen 146 MLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLR 223 (699)
T ss_pred hCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhHHHHhcccCCC
Confidence 478999999999877532 334566789999999999999844 778899999999887666652 3334688999999
Q ss_pred EEEEEecCCCCCC
Q 040922 472 SLSLSVERNPNFC 484 (525)
Q Consensus 472 ~l~L~l~~N~~~C 484 (525)
.||++-..+...+
T Consensus 224 vLDIS~~~~~~~~ 236 (699)
T KOG3665|consen 224 VLDISRDKNNDDT 236 (699)
T ss_pred eeeccccccccch
Confidence 9999877665544
No 73
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.22 E-value=0.14 Score=50.65 Aligned_cols=66 Identities=29% Similarity=0.299 Sum_probs=38.4
Q ss_pred CCceEEecCCCCCccCCCchhhccCCCcCEEEcCCCCCCCcCc-hhccCCCCCCEEeCCCCcCCCCCCh
Q 040922 395 PPRIISLNLSSSGISGEIDPYIFSLTSIESLDLSNNSLTGLVP-DFLAELESLTVLNLSGNNLQGSLPA 462 (525)
Q Consensus 395 ~~~L~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~g~iP-~~l~~l~~L~~L~Ls~N~L~g~iP~ 462 (525)
++.|+.|.||-|+|+..- .+..++.|+.|+|..|.|...-- ..+.+|++|+.|-|..|.-.|.-+.
T Consensus 40 Mp~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc~~ag~ 106 (388)
T KOG2123|consen 40 MPLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPCCGEAGQ 106 (388)
T ss_pred cccceeEEeeccccccch--hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCcccccch
Confidence 456667777777766332 35566666677777766652211 2345566666666666666555543
No 74
>PRK15386 type III secretion protein GogB; Provisional
Probab=79.40 E-value=1.9 Score=45.60 Aligned_cols=64 Identities=17% Similarity=0.397 Sum_probs=43.8
Q ss_pred CCCceEEecCCC-CCccCCCchhhccCCCcCEEEcCCC-CCCCcCchhccCCCCCCEEeCCCCcC--CCCCChhhhcC
Q 040922 394 QPPRIISLNLSS-SGISGEIDPYIFSLTSIESLDLSNN-SLTGLVPDFLAELESLTVLNLSGNNL--QGSLPAGLVEK 467 (525)
Q Consensus 394 ~~~~L~~L~Ls~-n~l~g~ip~~~~~L~~L~~L~Ls~N-~l~g~iP~~l~~l~~L~~L~Ls~N~L--~g~iP~~l~~l 467 (525)
.|.+|+.|.+++ +.++ .+|..+. .+|+.|++++| .+. .+|. +|+.|+|+.|.+ -+.+|..|..|
T Consensus 70 LP~sLtsL~Lsnc~nLt-sLP~~LP--~nLe~L~Ls~Cs~L~-sLP~------sLe~L~L~~n~~~~L~~LPssLk~L 137 (426)
T PRK15386 70 LPNELTEITIENCNNLT-TLPGSIP--EGLEKLTVCHCPEIS-GLPE------SVRSLEIKGSATDSIKNVPNGLTSL 137 (426)
T ss_pred CCCCCcEEEccCCCCcc-cCCchhh--hhhhheEccCccccc-cccc------ccceEEeCCCCCcccccCcchHhhe
Confidence 456799999987 4453 6665553 58999999988 554 5554 467777776654 24788877655
No 75
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=78.37 E-value=2.4 Score=35.32 Aligned_cols=27 Identities=19% Similarity=0.147 Sum_probs=10.8
Q ss_pred EEEEehHHHHHH-HHHHHHHHhheeecc
Q 040922 497 IVPVLASVVTFS-VFLAALVILQHLRRR 523 (525)
Q Consensus 497 ~i~v~~~~~~~~-~~~~~~~~~~~~~~~ 523 (525)
++++++.+++++ +++.+++++|++|||
T Consensus 68 iagi~vg~~~~v~~lv~~l~w~f~~r~k 95 (96)
T PTZ00382 68 IAGISVAVVAVVGGLVGFLCWWFVCRGK 95 (96)
T ss_pred EEEEEeehhhHHHHHHHHHhheeEEeec
Confidence 444444333333 333334444444443
No 76
>PRK15386 type III secretion protein GogB; Provisional
Probab=77.76 E-value=3.6 Score=43.49 Aligned_cols=39 Identities=23% Similarity=0.338 Sum_probs=25.2
Q ss_pred CCCceEEecCCCC-CccCCCchhhccCCCcCEEEcCCCCCC--CcCchh
Q 040922 394 QPPRIISLNLSSS-GISGEIDPYIFSLTSIESLDLSNNSLT--GLVPDF 439 (525)
Q Consensus 394 ~~~~L~~L~Ls~n-~l~g~ip~~~~~L~~L~~L~Ls~N~l~--g~iP~~ 439 (525)
.++.|+.|++++| .+. .+|. +|+.|+++.|.+. +.+|..
T Consensus 92 LP~nLe~L~Ls~Cs~L~-sLP~------sLe~L~L~~n~~~~L~~LPss 133 (426)
T PRK15386 92 IPEGLEKLTVCHCPEIS-GLPE------SVRSLEIKGSATDSIKNVPNG 133 (426)
T ss_pred hhhhhhheEccCccccc-cccc------ccceEEeCCCCCcccccCcch
Confidence 3568999999988 554 4553 4677777776643 244543
No 77
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=72.80 E-value=0.5 Score=46.78 Aligned_cols=78 Identities=29% Similarity=0.363 Sum_probs=50.9
Q ss_pred ceEEecCCCCCccCCCchhhccCCCcCEEEcCCCCCCCcCchhccCCCCCCEEeCCCCcCCCCCC--hhhhcCCCCcEEE
Q 040922 397 RIISLNLSSSGISGEIDPYIFSLTSIESLDLSNNSLTGLVPDFLAELESLTVLNLSGNNLQGSLP--AGLVEKANNRSLS 474 (525)
Q Consensus 397 ~L~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~L~g~iP--~~l~~l~~l~~l~ 474 (525)
.++.|+.-++.|... .-...++.|+.|.||-|+++..-| +..+++|+.|+|..|.|. .+- ..|.++++|+.|.
T Consensus 20 ~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~-sldEL~YLknlpsLr~LW 94 (388)
T KOG2123|consen 20 NVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIE-SLDELEYLKNLPSLRTLW 94 (388)
T ss_pred HhhhhcccCCCccHH--HHHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccc-cHHHHHHHhcCchhhhHh
Confidence 455566666655521 124467888888888888884433 467888888888888887 332 2345677776655
Q ss_pred EEecCCC
Q 040922 475 LSVERNP 481 (525)
Q Consensus 475 L~l~~N~ 481 (525)
| ..||
T Consensus 95 L--~ENP 99 (388)
T KOG2123|consen 95 L--DENP 99 (388)
T ss_pred h--ccCC
Confidence 4 4777
No 78
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=72.38 E-value=0.74 Score=27.56 Aligned_cols=14 Identities=36% Similarity=0.582 Sum_probs=6.5
Q ss_pred CCCCEEeCCCCcCC
Q 040922 444 ESLTVLNLSGNNLQ 457 (525)
Q Consensus 444 ~~L~~L~Ls~N~L~ 457 (525)
++|++|+|++|+++
T Consensus 2 ~~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 2 PNLETLDLSNNQIT 15 (24)
T ss_dssp TT-SEEE-TSSBEH
T ss_pred CCCCEEEccCCcCC
Confidence 44555555555554
No 79
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=69.77 E-value=0.26 Score=47.51 Aligned_cols=62 Identities=11% Similarity=0.013 Sum_probs=56.2
Q ss_pred CCCceEEecCCCCCccCCCchhhccCCCcCEEEcCCCCCCCcCchhccCCCCCCEEeCCCCcCC
Q 040922 394 QPPRIISLNLSSSGISGEIDPYIFSLTSIESLDLSNNSLTGLVPDFLAELESLTVLNLSGNNLQ 457 (525)
Q Consensus 394 ~~~~L~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~L~ 457 (525)
.+.++..|+++.|++. .+|.++..+..+..+++.+|+++ ..|-++++++.++++++-.|.|.
T Consensus 63 ~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 63 ILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQKKTEFF 124 (326)
T ss_pred HHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhhccCcch
Confidence 3568889999999998 88999999999999999999999 89999999999999999988875
No 80
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=68.87 E-value=3.3 Score=25.64 Aligned_cols=18 Identities=56% Similarity=0.711 Sum_probs=12.2
Q ss_pred CCCCEEeCCCCcCCCCCCh
Q 040922 444 ESLTVLNLSGNNLQGSLPA 462 (525)
Q Consensus 444 ~~L~~L~Ls~N~L~g~iP~ 462 (525)
.+|+.|++++|+|+ .+|+
T Consensus 2 ~~L~~L~vs~N~Lt-~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLT-SLPE 19 (26)
T ss_pred cccceeecCCCccc-cCcc
Confidence 35677777777777 5664
No 81
>PF01034 Syndecan: Syndecan domain; InterPro: IPR001050 The syndecans are transmembrane proteoglycans which are involved in the organisation of cytoskeleton and/or actin microfilaments, and have important roles as cell surface receptors during cell-cell and/or cell-matrix interactions [, ]. Structurally, these proteins consist of four separate domains: A signal sequence; An extracellular domain (ectodomain) of variable length whose sequence is not evolutionary conserved in the various forms of syndecans. The ectodomain contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A transmembrane region; A highly conserved cytoplasmic domain of about 30 to 35 residues, which could interact with cytoskeletal proteins. The proteins known to belong to this family are: Syndecan 1. Syndecan 2 or fibroglycan. Syndecan 3 or neuroglycan or N-syndecan. Syndecan 4 or amphiglycan or ryudocan. Drosophila syndecan. Caenorhabditis elegans probable syndecan (F57C7.3). Syndecan-4, a transmembrane heparan sulphate proteoglycan, is a coreceptor with integrins in cell adhesion. It has been suggested to form a ternary signalling complex with protein kinase Calpha and phosphatidylinositol 4,5-bisphosphate (PIP2). Structural studies have demonstrated that the cytoplasmic domain undergoes a conformational transition and forms a symmetric dimer in the presence of phospholipid activator PIP2, and whose overall structure in solution exhibits a twisted clamp shape having a cavity in the centre of dimeric interface. In addition, it has been observed that the syndecan-4 variable domain interacts, strongly, not only with fatty acyl groups but also the anionic head group of PIP2. These findings indicate that PIP2 promotes oligomerisation of the syndecan-4 cytoplasmic domain for transmembrane signalling and cell-matrix adhesion [, ].; GO: 0008092 cytoskeletal protein binding, 0016020 membrane; PDB: 1EJQ_B 1EJP_B 1YBO_C 1OBY_Q.
Probab=67.89 E-value=1.8 Score=32.87 Aligned_cols=15 Identities=27% Similarity=0.310 Sum_probs=0.0
Q ss_pred EEEEEehHHHHHHHH
Q 040922 496 FIVPVLASVVTFSVF 510 (525)
Q Consensus 496 ~~i~v~~~~~~~~~~ 510 (525)
++.++|+.+++.++.
T Consensus 10 vlaavIaG~Vvgll~ 24 (64)
T PF01034_consen 10 VLAAVIAGGVVGLLF 24 (64)
T ss_dssp ---------------
T ss_pred HHHHHHHHHHHHHHH
Confidence 445555554443333
No 82
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=66.87 E-value=3 Score=45.05 Aligned_cols=14 Identities=43% Similarity=0.709 Sum_probs=8.9
Q ss_pred CceEEecCCCCCcc
Q 040922 396 PRIISLNLSSSGIS 409 (525)
Q Consensus 396 ~~L~~L~Ls~n~l~ 409 (525)
+.+.+++|++|+|.
T Consensus 218 p~i~sl~lsnNrL~ 231 (585)
T KOG3763|consen 218 PEILSLSLSNNRLY 231 (585)
T ss_pred cceeeeecccchhh
Confidence 45666666666654
No 83
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=65.92 E-value=2.7 Score=36.51 Aligned_cols=9 Identities=33% Similarity=0.069 Sum_probs=3.1
Q ss_pred HhheeeccC
Q 040922 516 ILQHLRRRK 524 (525)
Q Consensus 516 ~~~~~~~~~ 524 (525)
+++++|++|
T Consensus 85 ~y~irR~~K 93 (122)
T PF01102_consen 85 SYCIRRLRK 93 (122)
T ss_dssp HHHHHHHS-
T ss_pred HHHHHHHhc
Confidence 333333333
No 84
>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains. They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].
Probab=62.59 E-value=6.2 Score=37.49 Aligned_cols=26 Identities=12% Similarity=0.413 Sum_probs=20.4
Q ss_pred CceEEEEEehHHHHHHHHHHHHHHhh
Q 040922 493 NNRFIVPVLASVVTFSVFLAALVILQ 518 (525)
Q Consensus 493 ~~~~~i~v~~~~~~~~~~~~~~~~~~ 518 (525)
...++|+|+++++.|.++|++.+++.
T Consensus 36 ~~~I~iaiVAG~~tVILVI~i~v~vR 61 (221)
T PF08374_consen 36 YVKIMIAIVAGIMTVILVIFIVVLVR 61 (221)
T ss_pred ceeeeeeeecchhhhHHHHHHHHHHH
Confidence 44489999999998888887776665
No 85
>PF14610 DUF4448: Protein of unknown function (DUF4448)
Probab=60.08 E-value=9 Score=36.01 Aligned_cols=29 Identities=14% Similarity=0.249 Sum_probs=18.4
Q ss_pred EEEEEehHHHHHHHHHHHHHHhheeeccC
Q 040922 496 FIVPVLASVVTFSVFLAALVILQHLRRRK 524 (525)
Q Consensus 496 ~~i~v~~~~~~~~~~~~~~~~~~~~~~~~ 524 (525)
..++|++.++++++++++++++++.||+|
T Consensus 158 ~~laI~lPvvv~~~~~~~~~~~~~~R~~R 186 (189)
T PF14610_consen 158 YALAIALPVVVVVLALIMYGFFFWNRKKR 186 (189)
T ss_pred eeEEEEccHHHHHHHHHHHhhheeeccce
Confidence 56777777777776666666555545444
No 86
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=59.17 E-value=14 Score=31.37 Aligned_cols=54 Identities=20% Similarity=0.292 Sum_probs=19.8
Q ss_pred ceEEecCCCCCccCCCchhhccCCCcCEEEcCCCCCCCcCchhccCCCCCCEEeCC
Q 040922 397 RIISLNLSSSGISGEIDPYIFSLTSIESLDLSNNSLTGLVPDFLAELESLTVLNLS 452 (525)
Q Consensus 397 ~L~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls 452 (525)
+|+.+.+.. .+...-...|..+.+|+.+.+.++ +...-...|..+++|+.+.+.
T Consensus 13 ~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~ 66 (129)
T PF13306_consen 13 NLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFP 66 (129)
T ss_dssp T--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEET
T ss_pred CCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeeccccccccccc
Confidence 344444442 333222333455555555555543 443333444455455555554
No 87
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=56.95 E-value=9.5 Score=23.60 Aligned_cols=15 Identities=40% Similarity=0.603 Sum_probs=11.3
Q ss_pred CCCCCEEeCCCCcCC
Q 040922 443 LESLTVLNLSGNNLQ 457 (525)
Q Consensus 443 l~~L~~L~Ls~N~L~ 457 (525)
+++|+.|+|+.|+++
T Consensus 1 L~~L~~L~L~~NkI~ 15 (26)
T smart00365 1 LTNLEELDLSQNKIK 15 (26)
T ss_pred CCccCEEECCCCccc
Confidence 457788888888776
No 88
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=55.30 E-value=5.8 Score=26.85 Aligned_cols=16 Identities=13% Similarity=0.272 Sum_probs=7.5
Q ss_pred EEEehHHHHHHHHHHH
Q 040922 498 VPVLASVVTFSVFLAA 513 (525)
Q Consensus 498 i~v~~~~~~~~~~~~~ 513 (525)
|++++++++.++++.+
T Consensus 6 IaIIv~V~vg~~iiii 21 (38)
T PF02439_consen 6 IAIIVAVVVGMAIIII 21 (38)
T ss_pred hhHHHHHHHHHHHHHH
Confidence 4445555554444443
No 89
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=54.06 E-value=14 Score=38.03 Aligned_cols=62 Identities=27% Similarity=0.235 Sum_probs=39.7
Q ss_pred CceEEecCCCCCccCCCchh----hccCCCcCEEEcCCCCCCCc-------------CchhccCCCCCCEEeCCCCcCC
Q 040922 396 PRIISLNLSSSGISGEIDPY----IFSLTSIESLDLSNNSLTGL-------------VPDFLAELESLTVLNLSGNNLQ 457 (525)
Q Consensus 396 ~~L~~L~Ls~n~l~g~ip~~----~~~L~~L~~L~Ls~N~l~g~-------------iP~~l~~l~~L~~L~Ls~N~L~ 457 (525)
++|+.|+||.|.|...-++. +..+..|+.|.|.||.+.-. .-.-.+.-+.|+++....|++.
T Consensus 92 ~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrle 170 (382)
T KOG1909|consen 92 PKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLE 170 (382)
T ss_pred CceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccc
Confidence 47888888888887554443 44567788888888866511 1111234466777777777775
No 90
>PF06024 DUF912: Nucleopolyhedrovirus protein of unknown function (DUF912); InterPro: IPR009261 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf78; it is a family of uncharacterised viral proteins.
Probab=53.28 E-value=3.9 Score=34.39 Aligned_cols=9 Identities=33% Similarity=0.479 Sum_probs=4.3
Q ss_pred HhheeeccC
Q 040922 516 ILQHLRRRK 524 (525)
Q Consensus 516 ~~~~~~~~~ 524 (525)
.|+++|.|+
T Consensus 83 YFVILRer~ 91 (101)
T PF06024_consen 83 YFVILRERQ 91 (101)
T ss_pred EEEEEeccc
Confidence 444455554
No 91
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=52.86 E-value=9 Score=38.12 Aligned_cols=38 Identities=32% Similarity=0.436 Sum_probs=22.0
Q ss_pred CceEEecCCCCCccCCCchhhc----cCCCcCEEEcCCCCCC
Q 040922 396 PRIISLNLSSSGISGEIDPYIF----SLTSIESLDLSNNSLT 433 (525)
Q Consensus 396 ~~L~~L~Ls~n~l~g~ip~~~~----~L~~L~~L~Ls~N~l~ 433 (525)
++++.++||.|.+....|+.+. .-+.|.+|.|++|.+-
T Consensus 92 p~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlG 133 (388)
T COG5238 92 PRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLG 133 (388)
T ss_pred CcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCC
Confidence 4566666666666655554433 3445666666666553
No 92
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=52.82 E-value=14 Score=31.46 Aligned_cols=75 Identities=15% Similarity=0.288 Sum_probs=36.9
Q ss_pred CceEEecCCCCCccCCCchhhccCCCcCEEEcCCCCCCCcCchhccCCCCCCEEeCCCCcCCCCCChhhhcCCCCcEEE
Q 040922 396 PRIISLNLSSSGISGEIDPYIFSLTSIESLDLSNNSLTGLVPDFLAELESLTVLNLSGNNLQGSLPAGLVEKANNRSLS 474 (525)
Q Consensus 396 ~~L~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~L~g~iP~~l~~l~~l~~l~ 474 (525)
..|+.+.+.++ +...-...|..+..|+.+.+.+ .+.......|..+++|+.+++..| +. .++.....-.+++.+.
T Consensus 35 ~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~~-~~-~i~~~~f~~~~l~~i~ 109 (129)
T PF13306_consen 35 TSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIPSN-IT-EIGSSSFSNCNLKEIN 109 (129)
T ss_dssp TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEETTT--B-EEHTTTTTT-T--EEE
T ss_pred ccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccccccCcc-cc-EEchhhhcCCCceEEE
Confidence 35667777664 5533344567776788888765 444344556677778888887655 44 3433332222454443
No 93
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=49.75 E-value=14 Score=23.06 Aligned_cols=14 Identities=50% Similarity=0.572 Sum_probs=10.7
Q ss_pred CCCCEEeCCCCcCC
Q 040922 444 ESLTVLNLSGNNLQ 457 (525)
Q Consensus 444 ~~L~~L~Ls~N~L~ 457 (525)
++|+.|+|++|.+.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 46788888888775
No 94
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=48.04 E-value=50 Score=33.06 Aligned_cols=38 Identities=18% Similarity=0.278 Sum_probs=18.0
Q ss_pred CCcCEEEcCCCCCCCcCchh----ccCCCCCCEEeCCCCcCC
Q 040922 420 TSIESLDLSNNSLTGLVPDF----LAELESLTVLNLSGNNLQ 457 (525)
Q Consensus 420 ~~L~~L~Ls~N~l~g~iP~~----l~~l~~L~~L~Ls~N~L~ 457 (525)
+.|+......|+|....-.. +..=..|+.+.+..|.+.
T Consensus 157 p~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIr 198 (388)
T COG5238 157 PKLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQNGIR 198 (388)
T ss_pred CCceEEEeccchhccCcHHHHHHHHHhhcCceeEEeeecCcC
Confidence 45666666666665221111 111135566666555443
No 95
>PTZ00046 rifin; Provisional
Probab=47.71 E-value=4.5 Score=41.59 Aligned_cols=28 Identities=32% Similarity=0.530 Sum_probs=12.5
Q ss_pred EEEEEehHHHHHHHHHHHHHHhheeeccC
Q 040922 496 FIVPVLASVVTFSVFLAALVILQHLRRRK 524 (525)
Q Consensus 496 ~~i~v~~~~~~~~~~~~~~~~~~~~~~~~ 524 (525)
++.+|++++++|++.+.+++++.+ ||||
T Consensus 317 IiaSiiAIvVIVLIMvIIYLILRY-RRKK 344 (358)
T PTZ00046 317 IIASIVAIVVIVLIMVIIYLILRY-RRKK 344 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh-hhcc
Confidence 444555555554444333333333 4443
No 96
>TIGR01477 RIFIN variant surface antigen, rifin family. This model represents the rifin branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of rifin sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 20 bits.
Probab=47.45 E-value=4.6 Score=41.44 Aligned_cols=28 Identities=25% Similarity=0.520 Sum_probs=12.7
Q ss_pred EEEEEehHHHHHHHHHHHHHHhheeeccC
Q 040922 496 FIVPVLASVVTFSVFLAALVILQHLRRRK 524 (525)
Q Consensus 496 ~~i~v~~~~~~~~~~~~~~~~~~~~~~~~ 524 (525)
+++++++++++|++.+.+++++.+ ||||
T Consensus 312 IiaSiIAIvvIVLIMvIIYLILRY-RRKK 339 (353)
T TIGR01477 312 IIASIIAILIIVLIMVIIYLILRY-RRKK 339 (353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh-hhcc
Confidence 455555555554444433434433 4443
No 97
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=46.89 E-value=7.4 Score=38.58 Aligned_cols=14 Identities=14% Similarity=0.199 Sum_probs=5.3
Q ss_pred hHHHHHHHHHHHHH
Q 040922 502 ASVVTFSVFLAALV 515 (525)
Q Consensus 502 ~~~~~~~~~~~~~~ 515 (525)
+.|+++++|+++++
T Consensus 265 alvllil~vvliiL 278 (295)
T TIGR01478 265 ALVLIILTVVLIIL 278 (295)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 98
>PTZ00370 STEVOR; Provisional
Probab=46.54 E-value=7.5 Score=38.60 Aligned_cols=14 Identities=14% Similarity=0.185 Sum_probs=5.4
Q ss_pred hHHHHHHHHHHHHH
Q 040922 502 ASVVTFSVFLAALV 515 (525)
Q Consensus 502 ~~~~~~~~~~~~~~ 515 (525)
+.|+++++|+++++
T Consensus 261 alvllil~vvliil 274 (296)
T PTZ00370 261 ALVLLILAVVLIIL 274 (296)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 99
>KOG3593 consensus Predicted receptor-like serine/threonine kinase [Signal transduction mechanisms]
Probab=46.44 E-value=7.8 Score=38.48 Aligned_cols=121 Identities=15% Similarity=0.139 Sum_probs=0.0
Q ss_pred EEEEcCCCcccccccc---eeeEEeeecCCCC---CCCccCCCCCCCcccccCCCCCceeeccceeecCCCCCCCCChHH
Q 040922 161 ELRPITNSIYATQSGS---LSRYFRWDVGSTT---NETFRYPDDVYDRIWSPNSFYYWAPISTSSNVDSTGTINFNLPST 234 (525)
Q Consensus 161 El~~lp~~~y~~~~~~---l~~~~R~n~G~~~---~~~i~~~~D~~~R~W~~d~~~~~~~~~~~~~i~~~~~~~~~~P~~ 234 (525)
|+|++--.....+.+| +..++-+|+||+. ...|+|..|+.- +..-....--...|.. ....--..
T Consensus 39 ~~~~~lv~v~~ga~Taa~~~svI~aVncGgdaavd~ygI~f~aD~~~------~VGrasd~G~~l~i~~---raeeed~i 109 (355)
T KOG3593|consen 39 EVRSLLVDVVRGAPTAALPSSVIPAVNCGGDAAVDNYGIRFAADPLE------GVGRASDYGMVLGIGC---RAEEEDII 109 (355)
T ss_pred hhhhheeeeeccCccccCchhhhheeccCChhhhcccceEeeccccc------cccccCCccceeeccc---cCChhhhh
Q ss_pred HHhhccccCCCCeeeEEEEe-ecCCCceEEEEEEeecccccCCCCceEEEEEEEC-CeeeccCcc
Q 040922 235 VMQTAAIPANGVTSLEFHWV-PVNRTFKYYVYMHFSEVGSDLAKNQTREMYIYFN-GEKWHGPLS 297 (525)
Q Consensus 235 V~~TA~~~~~~~~~~~~~w~-~v~~~~~y~v~lhF~Ei~~~~~~~~~R~F~I~in-~~~~~~~~~ 297 (525)
.|+|++-.. -.+..+ +.+....|-+.|.|||+. .+..++.+|++-+| +..+.+..+
T Consensus 110 ly~ter~ne-----etFgyd~pik~dgdyalvlkfaevy--F~~~q~kvfdvrln~sh~vVk~ld 167 (355)
T KOG3593|consen 110 LYQTERYNE-----ETFGYDVPIKEDGDYALVLKFAEVY--FKTCQHKVFDVRLNCSHCVVKALD 167 (355)
T ss_pred hhhhcccch-----hhhcccccccCCCceehhhhHHHHH--HHhhhhhheeeeeccceeEEeccc
No 100
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=44.95 E-value=3.2 Score=41.71 Aligned_cols=56 Identities=27% Similarity=0.331 Sum_probs=29.9
Q ss_pred ceEEecCCCCCccC-CCchhhccCCCcCEEEcCCCCCCCcCchhccCCCCCCEEeCC
Q 040922 397 RIISLNLSSSGISG-EIDPYIFSLTSIESLDLSNNSLTGLVPDFLAELESLTVLNLS 452 (525)
Q Consensus 397 ~L~~L~Ls~n~l~g-~ip~~~~~L~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls 452 (525)
+|+.||||+..|+- .+-.-+..+.+|+.|.|.+++|...+-..+++-.+|+.|+|+
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnls 242 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLS 242 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccc
Confidence 45666666655542 122334455556666666666655555555555555555554
No 101
>PF11857 DUF3377: Domain of unknown function (DUF3377); InterPro: IPR021805 This domain is functionally uncharacterised and found at the C terminus of peptidases belonging to MEROPS peptidase family M10A, membrane-type matrix metallopeptidases (clan MA). ; GO: 0004222 metalloendopeptidase activity
Probab=42.65 E-value=39 Score=26.51 Aligned_cols=17 Identities=24% Similarity=0.303 Sum_probs=8.5
Q ss_pred EEEEehHHHHHHHHHHH
Q 040922 497 IVPVLASVVTFSVFLAA 513 (525)
Q Consensus 497 ~i~v~~~~~~~~~~~~~ 513 (525)
++.|++..++++.+++.
T Consensus 31 avaVviPl~L~LCiLvl 47 (74)
T PF11857_consen 31 AVAVVIPLVLLLCILVL 47 (74)
T ss_pred EEEEeHHHHHHHHHHHH
Confidence 45555555555444443
No 102
>PF12877 DUF3827: Domain of unknown function (DUF3827); InterPro: IPR024606 The function of the proteins in this entry is not currently known, but one of the human proteins (Q9HCM3 from SWISSPROT) has been implicated in pilocytic astrocytomas [, , ]. In the majority of cases of pilocytic astrocytomas a tandem duplication produces an in-frame fusion of the gene encoding this protein and the BRAF oncogene. The resulting fusion protein has constitutive BRAF kinase activity and is capable of transforming cells.
Probab=42.24 E-value=18 Score=39.99 Aligned_cols=24 Identities=21% Similarity=0.206 Sum_probs=14.8
Q ss_pred EEEEEehHHHHHHHHHHHHHHhhe
Q 040922 496 FIVPVLASVVTFSVFLAALVILQH 519 (525)
Q Consensus 496 ~~i~v~~~~~~~~~~~~~~~~~~~ 519 (525)
++++|++.+++++++++++.+.+|
T Consensus 271 II~gVlvPv~vV~~Iiiil~~~LC 294 (684)
T PF12877_consen 271 IIAGVLVPVLVVLLIIIILYWKLC 294 (684)
T ss_pred EEehHhHHHHHHHHHHHHHHHHHh
Confidence 557777777766666555555554
No 103
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=42.01 E-value=15 Score=37.80 Aligned_cols=13 Identities=54% Similarity=0.848 Sum_probs=6.1
Q ss_pred CCCCEEeCCCCcC
Q 040922 444 ESLTVLNLSGNNL 456 (525)
Q Consensus 444 ~~L~~L~Ls~N~L 456 (525)
++|+.|.|.+|.+
T Consensus 270 p~L~vl~l~gNeI 282 (382)
T KOG1909|consen 270 PSLEVLELAGNEI 282 (382)
T ss_pred CCCceeccCcchh
Confidence 4444444444444
No 104
>PF15345 TMEM51: Transmembrane protein 51
Probab=40.60 E-value=23 Score=34.16 Aligned_cols=33 Identities=18% Similarity=0.242 Sum_probs=20.5
Q ss_pred CCCceEEEEEehHHHHHHHHHHHHHHhheeecc
Q 040922 491 KKNNRFIVPVLASVVTFSVFLAALVILQHLRRR 523 (525)
Q Consensus 491 ~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~ 523 (525)
.|++++.|+.+.+.++++++++-+|+-++-|||
T Consensus 53 ~ksKt~SVAyVLVG~Gv~LLLLSICL~IR~KRr 85 (233)
T PF15345_consen 53 LKSKTFSVAYVLVGSGVALLLLSICLSIRDKRR 85 (233)
T ss_pred ccceeEEEEEehhhHHHHHHHHHHHHHHHHHHH
Confidence 345556777776666777777667765544443
No 105
>PHA03099 epidermal growth factor-like protein (EGF-like protein); Provisional
Probab=39.19 E-value=21 Score=31.03 Aligned_cols=29 Identities=17% Similarity=0.237 Sum_probs=13.9
Q ss_pred EEEEEehHHHHHHHHHHHHHHhheeeccC
Q 040922 496 FIVPVLASVVTFSVFLAALVILQHLRRRK 524 (525)
Q Consensus 496 ~~i~v~~~~~~~~~~~~~~~~~~~~~~~~ 524 (525)
+.++++++++++.++...+.++.++.||+
T Consensus 101 ia~~~il~il~~i~is~~~~~~yr~~r~~ 129 (139)
T PHA03099 101 IPSPGIVLVLVGIIITCCLLSVYRFTRRT 129 (139)
T ss_pred hhhhHHHHHHHHHHHHHHHHhhheeeecc
Confidence 44455555444444433344555554444
No 106
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=37.31 E-value=34 Score=23.60 Aligned_cols=30 Identities=27% Similarity=0.328 Sum_probs=15.4
Q ss_pred EEEEEeh-HHHHHHHHHHHHHHhhee-eccCC
Q 040922 496 FIVPVLA-SVVTFSVFLAALVILQHL-RRRKQ 525 (525)
Q Consensus 496 ~~i~v~~-~~~~~~~~~~~~~~~~~~-~~~~~ 525 (525)
-.+.|.+ +++-+.++++++.+++++ |||+|
T Consensus 9 ~~vaIa~~VvVPV~vI~~vl~~~l~~~~rR~k 40 (40)
T PF08693_consen 9 NTVAIAVGVVVPVGVIIIVLGAFLFFWYRRKK 40 (40)
T ss_pred ceEEEEEEEEechHHHHHHHHHHhheEEeccC
Confidence 3444444 444455555555577763 55554
No 107
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=34.53 E-value=27 Score=28.31 Aligned_cols=17 Identities=12% Similarity=0.139 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHhhee
Q 040922 504 VVTFSVFLAALVILQHL 520 (525)
Q Consensus 504 ~~~~~~~~~~~~~~~~~ 520 (525)
++++++.++++.+++|+
T Consensus 40 I~~iFil~VilwfvCC~ 56 (94)
T PF05393_consen 40 ICGIFILLVILWFVCCK 56 (94)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34443333333344444
No 108
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=32.86 E-value=5.4 Score=40.17 Aligned_cols=57 Identities=28% Similarity=0.398 Sum_probs=48.1
Q ss_pred CCcCEEEcCCCCCCC-cCchhccCCCCCCEEeCCCCcCCCCCChhhhcCCCCcEEEEE
Q 040922 420 TSIESLDLSNNSLTG-LVPDFLAELESLTVLNLSGNNLQGSLPAGLVEKANNRSLSLS 476 (525)
Q Consensus 420 ~~L~~L~Ls~N~l~g-~iP~~l~~l~~L~~L~Ls~N~L~g~iP~~l~~l~~l~~l~L~ 476 (525)
+.|+.||||+-.++- .+..-++++.+|+.|.|.+++|...|-..+.+-.+|..++|+
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnls 242 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLS 242 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccc
Confidence 358999999988874 344557788999999999999999999999988889888776
No 109
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=31.98 E-value=9.4 Score=36.31 Aligned_cols=80 Identities=31% Similarity=0.227 Sum_probs=50.6
Q ss_pred ceEEecCCCCCccCCCchhhccCCCcCEEEcCCCCCCCc-Cchhcc-CCCCCCEEeCCCC-cCCCCCChhhhcCCCCcEE
Q 040922 397 RIISLNLSSSGISGEIDPYIFSLTSIESLDLSNNSLTGL-VPDFLA-ELESLTVLNLSGN-NLQGSLPAGLVEKANNRSL 473 (525)
Q Consensus 397 ~L~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~g~-iP~~l~-~l~~L~~L~Ls~N-~L~g~iP~~l~~l~~l~~l 473 (525)
.++.++-++..|.+.--..+.++..|+.|.+.+..=-+- --+.++ -.++|+.|+|+.| +++..=-..+..+++|+.|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 477888888888766556677777777777666521110 001122 3478999999966 6665445567777777765
Q ss_pred EEE
Q 040922 474 SLS 476 (525)
Q Consensus 474 ~L~ 476 (525)
.+.
T Consensus 182 ~l~ 184 (221)
T KOG3864|consen 182 HLY 184 (221)
T ss_pred Hhc
Confidence 543
No 110
>PF15102 TMEM154: TMEM154 protein family
Probab=26.16 E-value=20 Score=32.02 Aligned_cols=30 Identities=10% Similarity=0.335 Sum_probs=20.5
Q ss_pred eEEEEEehHHHHHHHHHHHHHHhheeeccC
Q 040922 495 RFIVPVLASVVTFSVFLAALVILQHLRRRK 524 (525)
Q Consensus 495 ~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~ 524 (525)
.++||.++.+++++++++++....++|.|.
T Consensus 60 mIlIP~VLLvlLLl~vV~lv~~~kRkr~K~ 89 (146)
T PF15102_consen 60 MILIPLVLLVLLLLSVVCLVIYYKRKRTKQ 89 (146)
T ss_pred EEeHHHHHHHHHHHHHHHheeEEeecccCC
Confidence 388886666666666666666668877663
No 111
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=25.41 E-value=44 Score=43.33 Aligned_cols=32 Identities=25% Similarity=0.348 Sum_probs=26.4
Q ss_pred cCCCCCccCCCchhhccCCCcCEEEcCCCCCC
Q 040922 402 NLSSSGISGEIDPYIFSLTSIESLDLSNNSLT 433 (525)
Q Consensus 402 ~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~ 433 (525)
||++|+|+-.-+..|..|.+|+.|+|++|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 68899999555566888999999999999775
No 112
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=25.07 E-value=38 Score=36.99 Aligned_cols=67 Identities=31% Similarity=0.301 Sum_probs=38.4
Q ss_pred cCCCcCEEEcCCCCCCCcC--chhccCCCCCCEEeCCCCcCCCCCChhhhcCCCCcEEEEEecCCCCCCC
Q 040922 418 SLTSIESLDLSNNSLTGLV--PDFLAELESLTVLNLSGNNLQGSLPAGLVEKANNRSLSLSVERNPNFCL 485 (525)
Q Consensus 418 ~L~~L~~L~Ls~N~l~g~i--P~~l~~l~~L~~L~Ls~N~L~g~iP~~l~~l~~l~~l~L~l~~N~~~C~ 485 (525)
+.+.+..+.|++|+|.... ..--...++|+.|+|++|...-..-.++.++..+..-.|-+.||| +|.
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNP-lc~ 284 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNP-LCT 284 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCc-ccc
Confidence 3455677788888886321 122234578889999988222122334444444444445566888 464
No 113
>PF04862 DUF642: Protein of unknown function (DUF642); InterPro: IPR006946 This family contains a conserved region found in a number of uncharacterised plant proteins.
Probab=22.58 E-value=5.8e+02 Score=23.05 Aligned_cols=79 Identities=16% Similarity=0.229 Sum_probs=45.1
Q ss_pred EecCcCCCcceEEEEEeecCCCCCCCCCCeeEEEeCceEEEEEEecc---CCCcEEEEEEEecCCCcEEEEEEeCC---C
Q 040922 79 TLRPANGDVKFLIRASFMYGNYDGQDMPPSFDLMLGADVWDSVQLQD---SDGIITKEIIHMPNKGYIHVCLVHTY---S 152 (525)
Q Consensus 79 ~~~v~~g~~~yliR~~F~y~nyd~~~~~p~F~v~~~~~~~~~v~~~~---~~~~~~~E~i~~~~~~~l~vcf~~~~---~ 152 (525)
+|.+++|. .| +|+|.++. .-.......|.++......+.... ...-..+.+-+.+.+..+.+.|...+ .
T Consensus 72 ~~~t~~G~-~Y--~LtF~~~~--~~~~~~~l~V~v~~~~~~~~~~~~~~~~~~w~~~s~~F~A~~t~~~l~f~~~~~~~d 146 (159)
T PF04862_consen 72 TFTTVPGS-TY--TLTFSLAR--NCAQSESLSVSVGGQFSFVVTIQTSYGSGGWDTYSFTFTASSTRITLTFHNPGMESD 146 (159)
T ss_pred EEEccCCC-EE--EEEEEecC--CCCCCccEEEEEecccceEEEeeccCCCCCcEEEEEEEEeCCCEEEEEEECCCccCC
Confidence 56777887 77 68998872 112223577777763222222222 12234556667776678888886542 1
Q ss_pred C--CceeEEEEE
Q 040922 153 G--TPFISALEL 162 (525)
Q Consensus 153 ~--~pFIn~iEl 162 (525)
. -|+|-.+.|
T Consensus 147 ~~cGp~iDnV~v 158 (159)
T PF04862_consen 147 SACGPVIDNVSV 158 (159)
T ss_pred CCceeEEEEEEe
Confidence 1 277766655
No 114
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=22.55 E-value=57 Score=32.77 Aligned_cols=28 Identities=21% Similarity=0.363 Sum_probs=11.2
Q ss_pred EEEEEehHHHHHHHHHHHHHHhheeecc
Q 040922 496 FIVPVLASVVTFSVFLAALVILQHLRRR 523 (525)
Q Consensus 496 ~~i~v~~~~~~~~~~~~~~~~~~~~~~~ 523 (525)
++|.++..+..++++.++.+++.+.|||
T Consensus 230 VlIslAiALG~v~ll~l~Gii~~~~~r~ 257 (281)
T PF12768_consen 230 VLISLAIALGTVFLLVLIGIILAYIRRR 257 (281)
T ss_pred EEEehHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4444444444444443333333333333
No 115
>PF03302 VSP: Giardia variant-specific surface protein; InterPro: IPR005127 During infection, the intestinal protozoan parasite Giardia lamblia virus undergoes continuous antigenic variation which is determined by diversification of the parasite's major surface antigen, named VSP (variant surface protein).
Probab=22.27 E-value=82 Score=33.35 Aligned_cols=28 Identities=21% Similarity=0.074 Sum_probs=13.2
Q ss_pred EEEEEehHHHHHHHHHHH-HHHhheeecc
Q 040922 496 FIVPVLASVVTFSVFLAA-LVILQHLRRR 523 (525)
Q Consensus 496 ~~i~v~~~~~~~~~~~~~-~~~~~~~~~~ 523 (525)
.+++|.|.+++|+.-++. |.|||+.|+|
T Consensus 368 aIaGIsvavvvvVgglvGfLcWwf~crgk 396 (397)
T PF03302_consen 368 AIAGISVAVVVVVGGLVGFLCWWFICRGK 396 (397)
T ss_pred ceeeeeehhHHHHHHHHHHHhhheeeccc
Confidence 344444444444333333 4466655655
No 116
>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains. They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].
Probab=21.12 E-value=36 Score=32.44 Aligned_cols=29 Identities=14% Similarity=0.299 Sum_probs=21.9
Q ss_pred CceEEEEEehHHHHHHHHHHHHHHhheee
Q 040922 493 NNRFIVPVLASVVTFSVFLAALVILQHLR 521 (525)
Q Consensus 493 ~~~~~i~v~~~~~~~~~~~~~~~~~~~~~ 521 (525)
.+.-+-.+++++.+++.+++++++..+.|
T Consensus 33 ~~d~~~I~iaiVAG~~tVILVI~i~v~vR 61 (221)
T PF08374_consen 33 SKDYVKIMIAIVAGIMTVILVIFIVVLVR 61 (221)
T ss_pred cccceeeeeeeecchhhhHHHHHHHHHHH
Confidence 35577888888888887777777777777
No 117
>PF02430 AMA-1: Apical membrane antigen 1; InterPro: IPR003298 A novel antigen of Plasmodium falciparum has been cloned that contains a hydrophobic domain typical of an integral membrane protein. The antigen is designated apical membrane antigen 1 (AMA-1) by virtue of appearing to be located in the apical complex []. AMA-1 appears to be transported to the merozoite surface close to the time of schizont rupture. The 66kDa merozoite surface antigen (PK66) of Plasmodium knowlesi, a simian malaria, possesses vaccine-related properties believed to originate from a receptor-like role in parasite invasion of erythrocytes []. The sequence of PK66 is conserved throughout plasmodium, and shows high similarity to P. falciparum AMA-1. Following schizont rupture, the distribution of PK66 changes in a coordinate manner associated with merozoite invasion. Prior to rupture, the protein is concentrated at the apical end, following which it distributes itself entirely across the surface of the free merozoite. Immunofluorescence studies suggest that, during invasion, PK66 is excluded from the erythrocyte at, and behind, the invasion interface []. ; GO: 0009405 pathogenesis, 0016020 membrane; PDB: 2Y8R_D 2X2Z_A 2Y8T_A 2Y8S_D 1HN6_A 2Z8V_B 2Z8W_A 1Z40_E 2Q8B_A 2Q8A_A ....
Probab=20.37 E-value=45 Score=35.38 Aligned_cols=12 Identities=17% Similarity=0.346 Sum_probs=6.1
Q ss_pred EEecCCCCCCCC
Q 040922 475 LSVERNPNFCLS 486 (525)
Q Consensus 475 L~l~~N~~~C~~ 486 (525)
++++.+..-|.|
T Consensus 379 ~s~~k~~lkC~~ 390 (471)
T PF02430_consen 379 TSLDKESLKCPC 390 (471)
T ss_dssp EESSCGGGS-SS
T ss_pred eecCcccccCCc
Confidence 445555556665
No 118
>PF07213 DAP10: DAP10 membrane protein; InterPro: IPR009861 This family consists of several mammalian DAP10 membrane proteins. In activated mouse natural killer (NK) cells, the NKG2D receptor associates with two intracellular adaptors, DAP10 and DAP12, which trigger phosphatidyl inositol 3 kinase (PI3K) and Syk family protein tyrosine kinases, respectively. It has been suggested that the DAP10-PI3K pathway is sufficient to initiate NKG2D-mediated killing of target cells [].
Probab=20.19 E-value=48 Score=26.43 Aligned_cols=29 Identities=7% Similarity=0.260 Sum_probs=11.2
Q ss_pred CCCccCCCCceEEEEEehHHHHHHHHHHH
Q 040922 485 LSDSCKKKNNRFIVPVLASVVTFSVFLAA 513 (525)
Q Consensus 485 ~~~~c~~~~~~~~i~v~~~~~~~~~~~~~ 513 (525)
+|..|..-.-.++.++++.=+++.++|+.
T Consensus 24 scs~C~~ls~g~LaGiV~~D~vlTLLIv~ 52 (79)
T PF07213_consen 24 SCSGCYPLSPGLLAGIVAADAVLTLLIVL 52 (79)
T ss_pred CCCCccccCHHHHHHHHHHHHHHHHHHHH
Confidence 44455332222344444443444444333
No 119
>PF07204 Orthoreo_P10: Orthoreovirus membrane fusion protein p10; InterPro: IPR009854 This family consists of several Orthoreovirus membrane fusion protein p10 sequences. p10 is thought to be a multifunctional protein that plays a key role in virus-host interaction [].
Probab=20.10 E-value=34 Score=28.13 Aligned_cols=9 Identities=11% Similarity=0.239 Sum_probs=3.5
Q ss_pred HHHhheeec
Q 040922 514 LVILQHLRR 522 (525)
Q Consensus 514 ~~~~~~~~~ 522 (525)
+.++++.|.
T Consensus 58 i~Lv~CC~~ 66 (98)
T PF07204_consen 58 IALVCCCRA 66 (98)
T ss_pred HHHHHHhhh
Confidence 333443333
Done!