Query 040922
Match_columns 525
No_of_seqs 344 out of 3059
Neff 8.0
Searched_HMMs 29240
Date Mon Mar 25 21:23:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040922.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040922hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2jwp_A Malectin, MGC80075; sug 99.8 2.4E-18 8.1E-23 159.2 13.7 145 14-166 7-172 (174)
2 2jwp_A Malectin, MGC80075; sug 99.8 4.7E-19 1.6E-23 163.9 6.7 148 178-342 5-171 (174)
3 3g39_A Variable lymphocyte rec 99.4 1.7E-12 6E-17 119.0 9.6 105 381-487 9-119 (170)
4 1ogq_A PGIP-2, polygalacturona 99.3 1E-12 3.6E-17 132.3 7.6 122 350-475 3-132 (313)
5 1w8a_A SLIT protein; signaling 99.3 6E-12 2.1E-16 117.6 7.1 92 394-487 52-143 (192)
6 2r9u_A Variable lymphocyte rec 99.2 1.8E-11 6.2E-16 112.7 9.7 92 394-487 31-122 (174)
7 4ecn_A Leucine-rich repeat pro 99.2 1E-11 3.5E-16 141.5 7.7 123 349-476 265-499 (876)
8 2wfh_A SLIT homolog 2 protein 99.2 2E-11 6.7E-16 114.3 8.0 91 395-487 53-143 (193)
9 2v70_A SLIT-2, SLIT homolog 2 99.2 2.5E-11 8.4E-16 116.0 8.5 92 394-487 79-170 (220)
10 3rgz_A Protein brassinosteroid 99.2 1.9E-11 6.4E-16 138.1 8.8 98 394-491 630-750 (768)
11 3e6j_A Variable lymphocyte rec 99.2 7.9E-11 2.7E-15 113.1 11.1 44 442-487 133-176 (229)
12 2ifg_A High affinity nerve gro 99.2 3.6E-11 1.2E-15 122.4 9.1 103 382-487 9-120 (347)
13 4eco_A Uncharacterized protein 99.2 2.6E-11 9.1E-16 134.0 7.7 117 350-476 27-257 (636)
14 4g8a_A TOLL-like receptor 4; l 99.1 5.1E-11 1.8E-15 130.1 8.2 92 394-487 492-584 (635)
15 2v9t_B SLIT homolog 2 protein 99.1 8.3E-11 2.9E-15 112.3 8.4 92 394-487 78-169 (220)
16 2o6r_A Variable lymphocyte rec 99.1 1.6E-10 5.6E-15 105.9 9.1 90 395-486 51-140 (177)
17 1p9a_G Platelet glycoprotein I 99.1 1.6E-10 5.5E-15 115.1 7.6 91 394-487 122-212 (290)
18 2wfh_A SLIT homolog 2 protein 99.0 9.2E-10 3.1E-14 102.9 10.0 99 381-482 10-114 (193)
19 3rgz_A Protein brassinosteroid 99.0 2.1E-10 7.2E-15 129.5 5.7 116 350-475 9-158 (768)
20 3m19_A Variable lymphocyte rec 99.0 9.9E-10 3.4E-14 106.6 9.6 90 394-485 105-194 (251)
21 2o6s_A Variable lymphocyte rec 99.0 1.7E-09 5.9E-14 101.7 9.7 92 394-487 74-165 (208)
22 1w8a_A SLIT protein; signaling 99.0 1.2E-09 4.1E-14 101.9 8.3 100 381-482 8-114 (192)
23 3zyj_A Leucine-rich repeat-con 99.0 6.8E-10 2.3E-14 116.9 7.4 91 394-486 205-295 (440)
24 2o6q_A Variable lymphocyte rec 98.9 1.6E-09 5.6E-14 106.3 9.5 92 394-487 131-222 (270)
25 3rfs_A Internalin B, repeat mo 98.9 1.7E-09 5.9E-14 106.3 9.7 92 394-487 131-222 (272)
26 3zyi_A Leucine-rich repeat-con 98.9 1E-09 3.4E-14 116.0 7.6 92 394-487 216-307 (452)
27 4fcg_A Uncharacterized protein 98.9 4E-10 1.4E-14 114.2 3.8 125 349-476 23-158 (328)
28 2o6s_A Variable lymphocyte rec 98.9 3.6E-09 1.2E-13 99.4 9.7 95 381-475 7-107 (208)
29 2xot_A Amphoterin-induced prot 98.9 2.4E-09 8.4E-14 109.8 8.2 94 394-487 110-206 (361)
30 1ozn_A Reticulon 4 receptor; N 98.9 2E-09 6.7E-14 106.3 6.9 92 394-487 151-242 (285)
31 3v47_A TOLL-like receptor 5B a 98.9 3.9E-09 1.3E-13 111.0 8.8 92 394-487 321-412 (455)
32 2z66_A Variable lymphocyte rec 98.8 3.2E-09 1.1E-13 105.8 7.3 92 394-487 173-265 (306)
33 2v70_A SLIT-2, SLIT homolog 2 98.8 4.9E-09 1.7E-13 99.9 7.9 87 394-482 55-141 (220)
34 2v9t_B SLIT homolog 2 protein 98.8 6.9E-09 2.4E-13 98.8 8.6 85 395-481 55-139 (220)
35 3vq2_A TLR4, TOLL-like recepto 98.8 4.4E-09 1.5E-13 114.9 7.9 91 394-487 471-562 (606)
36 4fcg_A Uncharacterized protein 98.8 1.3E-08 4.5E-13 103.0 9.9 82 395-476 228-309 (328)
37 3j0a_A TOLL-like receptor 5; m 98.8 4.3E-09 1.5E-13 120.0 6.3 86 394-486 478-563 (844)
38 3m19_A Variable lymphocyte rec 98.8 9.2E-09 3.1E-13 99.7 7.5 82 395-476 58-139 (251)
39 3t6q_A CD180 antigen; protein- 98.7 5.2E-09 1.8E-13 114.3 5.5 91 394-487 474-564 (606)
40 2z63_A TOLL-like receptor 4, v 98.7 1E-08 3.5E-13 110.8 7.6 92 394-487 443-535 (570)
41 4g8a_A TOLL-like receptor 4; l 98.7 1E-08 3.4E-13 111.9 7.6 92 385-476 35-132 (635)
42 2id5_A Lingo-1, leucine rich r 98.7 7.2E-09 2.4E-13 109.9 6.3 91 395-487 247-337 (477)
43 1ogq_A PGIP-2, polygalacturona 98.7 5.2E-09 1.8E-13 105.1 4.4 79 396-474 76-155 (313)
44 2o6r_A Variable lymphocyte rec 98.7 2.6E-08 8.9E-13 91.1 8.5 99 381-481 7-111 (177)
45 1ziw_A TOLL-like receptor 3; i 98.7 1.5E-08 5.3E-13 112.2 8.3 91 394-487 534-626 (680)
46 3v47_A TOLL-like receptor 5B a 98.7 1.3E-08 4.4E-13 107.0 7.1 81 395-475 29-110 (455)
47 2je0_A Acidic leucine-rich nuc 98.7 1.6E-08 5.4E-13 89.7 6.6 84 394-481 40-124 (149)
48 3e6j_A Variable lymphocyte rec 98.7 2.5E-08 8.6E-13 95.4 8.5 93 382-474 20-118 (229)
49 2je0_A Acidic leucine-rich nuc 98.7 1.6E-08 5.4E-13 89.7 5.8 82 394-475 62-147 (149)
50 2z81_A CD282 antigen, TOLL-lik 98.7 2E-08 6.9E-13 108.1 6.7 78 397-474 27-104 (549)
51 2o6q_A Variable lymphocyte rec 98.6 5E-08 1.7E-12 95.6 8.6 80 396-475 37-116 (270)
52 1dce_A Protein (RAB geranylger 98.6 3.7E-08 1.3E-12 107.2 8.5 84 394-482 461-545 (567)
53 2ell_A Acidic leucine-rich nuc 98.6 2.7E-08 9.3E-13 90.0 6.2 83 395-481 48-131 (168)
54 3zyi_A Leucine-rich repeat-con 98.6 5.2E-08 1.8E-12 102.8 8.2 94 383-476 56-155 (452)
55 3rfs_A Internalin B, repeat mo 98.6 8.9E-08 3E-12 93.9 9.1 86 394-481 107-192 (272)
56 2xot_A Amphoterin-induced prot 98.6 5.2E-08 1.8E-12 99.8 7.0 86 394-482 86-175 (361)
57 4b8c_D Glucose-repressible alc 98.6 4.1E-08 1.4E-12 110.1 6.7 82 396-482 247-328 (727)
58 3a79_B TLR6, VLRB.59, TOLL-lik 98.6 6E-08 2.1E-12 105.1 7.5 88 394-487 426-514 (562)
59 2z62_A TOLL-like receptor 4, v 98.6 6.4E-08 2.2E-12 94.9 6.8 80 396-475 52-131 (276)
60 1p9a_G Platelet glycoprotein I 98.6 1.3E-07 4.5E-12 93.9 9.0 87 394-482 98-184 (290)
61 1a9n_A U2A', U2A'; complex (nu 98.6 5.2E-08 1.8E-12 89.1 5.5 74 397-473 43-118 (176)
62 2z7x_B TOLL-like receptor 1, v 98.5 8.6E-08 2.9E-12 102.6 7.9 88 394-487 397-485 (520)
63 3vq2_A TLR4, TOLL-like recepto 98.5 8.1E-08 2.8E-12 104.8 7.7 79 396-474 32-110 (606)
64 3t6q_A CD180 antigen; protein- 98.5 6.1E-08 2.1E-12 105.8 6.7 81 395-475 32-112 (606)
65 2r9u_A Variable lymphocyte rec 98.5 1.3E-07 4.6E-12 86.5 7.9 79 399-482 15-93 (174)
66 2ell_A Acidic leucine-rich nuc 98.5 8.7E-08 3E-12 86.7 6.4 83 394-476 69-155 (168)
67 2z80_A TOLL-like receptor 2, v 98.5 8.6E-08 2.9E-12 97.5 7.0 80 396-475 52-131 (353)
68 3g39_A Variable lymphocyte rec 98.5 1.4E-07 4.7E-12 86.0 7.5 80 398-482 11-90 (170)
69 4ezg_A Putative uncharacterize 98.5 7.6E-08 2.6E-12 89.7 5.9 79 395-476 111-189 (197)
70 3zyj_A Leucine-rich repeat-con 98.5 1.6E-07 5.5E-12 98.6 8.5 94 383-476 45-144 (440)
71 2id5_A Lingo-1, leucine rich r 98.5 1.3E-07 4.4E-12 100.2 7.6 80 396-475 56-135 (477)
72 1ozn_A Reticulon 4 receptor; N 98.5 1.7E-07 5.9E-12 92.3 7.9 87 394-482 127-213 (285)
73 2ifg_A High affinity nerve gro 98.5 1.7E-07 5.9E-12 95.0 7.7 79 400-482 12-92 (347)
74 2z62_A TOLL-like receptor 4, v 98.5 2.6E-07 8.8E-12 90.5 8.5 88 394-481 98-188 (276)
75 1wwl_A Monocyte differentiatio 98.5 5.5E-08 1.9E-12 97.4 3.7 86 394-482 119-213 (312)
76 4eco_A Uncharacterized protein 98.5 4.6E-08 1.6E-12 108.0 3.4 82 394-475 204-312 (636)
77 4ezg_A Putative uncharacterize 98.5 3E-07 1E-11 85.6 8.2 85 394-481 86-170 (197)
78 2xwt_C Thyrotropin receptor; s 98.4 1.6E-07 5.3E-12 90.1 5.9 81 396-476 31-113 (239)
79 2z66_A Variable lymphocyte rec 98.4 2.2E-07 7.4E-12 92.4 7.1 88 394-483 148-236 (306)
80 2z81_A CD282 antigen, TOLL-lik 98.4 3E-07 1E-11 98.9 8.7 82 395-476 73-156 (549)
81 1xku_A Decorin; proteoglycan, 98.4 3E-07 1E-11 92.5 7.4 62 396-458 216-277 (330)
82 1xku_A Decorin; proteoglycan, 98.4 5.9E-07 2E-11 90.3 9.4 83 381-464 31-119 (330)
83 2ft3_A Biglycan; proteoglycan, 98.4 5E-07 1.7E-11 91.0 8.4 91 381-474 33-129 (332)
84 2z7x_B TOLL-like receptor 1, v 98.4 4.7E-07 1.6E-11 96.8 8.7 76 395-476 68-146 (520)
85 3oja_B Anopheles plasmodium-re 98.4 4.7E-07 1.6E-11 99.0 8.7 79 394-475 121-199 (597)
86 4b8c_D Glucose-repressible alc 98.4 2.8E-07 9.4E-12 103.4 7.0 83 394-481 222-304 (727)
87 2ft3_A Biglycan; proteoglycan, 98.4 3.1E-07 1.1E-11 92.6 6.7 87 395-484 216-308 (332)
88 1dce_A Protein (RAB geranylger 98.4 3.8E-07 1.3E-11 99.3 7.7 79 397-482 442-520 (567)
89 1ziw_A TOLL-like receptor 3; i 98.4 7.4E-07 2.5E-11 98.6 10.1 86 394-481 95-182 (680)
90 4ecn_A Leucine-rich repeat pro 98.4 9.3E-08 3.2E-12 108.9 2.6 73 395-467 447-540 (876)
91 1h6t_A Internalin B; cell adhe 98.4 1E-06 3.4E-11 87.4 9.7 77 394-476 132-208 (291)
92 1a9n_A U2A', U2A'; complex (nu 98.4 3.3E-07 1.1E-11 83.6 5.8 81 394-476 62-148 (176)
93 3o6n_A APL1; leucine-rich repe 98.4 6.7E-07 2.3E-11 92.1 8.7 78 394-475 115-193 (390)
94 1wwl_A Monocyte differentiatio 98.4 1.6E-07 5.5E-12 94.0 3.9 85 396-482 149-240 (312)
95 3o53_A Protein LRIM1, AGAP0063 98.4 1.6E-07 5.4E-12 94.3 3.8 84 396-485 169-252 (317)
96 2z80_A TOLL-like receptor 2, v 98.4 6.7E-07 2.3E-11 90.9 8.5 82 395-476 99-182 (353)
97 3oja_A Leucine-rich immune mol 98.3 1.8E-07 6.1E-12 99.9 3.8 71 396-468 191-262 (487)
98 3a79_B TLR6, VLRB.59, TOLL-lik 98.3 6.2E-07 2.1E-11 97.1 7.3 80 394-476 74-154 (562)
99 2z63_A TOLL-like receptor 4, v 98.3 6.6E-07 2.2E-11 96.5 7.1 82 395-476 51-132 (570)
100 1h6u_A Internalin H; cell adhe 98.3 1.3E-06 4.5E-11 87.2 8.7 83 394-484 149-231 (308)
101 1m9s_A Internalin B; cell inva 98.3 8.5E-07 2.9E-11 97.2 7.9 76 395-476 130-205 (605)
102 4fmz_A Internalin; leucine ric 98.3 1.2E-06 4E-11 88.5 8.3 76 395-474 264-339 (347)
103 3o6n_A APL1; leucine-rich repe 98.3 1E-06 3.5E-11 90.7 7.9 86 394-481 91-176 (390)
104 3j0a_A TOLL-like receptor 5; m 98.3 7.2E-07 2.5E-11 101.6 7.4 86 394-481 71-159 (844)
105 3oja_B Anopheles plasmodium-re 98.3 9.5E-07 3.3E-11 96.6 7.9 86 394-481 97-182 (597)
106 1xeu_A Internalin C; cellular 98.3 1.5E-06 5.1E-11 84.9 8.4 81 396-484 106-186 (263)
107 1m9s_A Internalin B; cell inva 98.3 1.4E-06 4.9E-11 95.4 9.0 80 394-481 107-186 (605)
108 2xwt_C Thyrotropin receptor; s 98.2 6.9E-07 2.4E-11 85.6 4.8 79 395-475 79-163 (239)
109 4glp_A Monocyte differentiatio 98.2 6.5E-07 2.2E-11 89.4 4.7 86 394-481 115-208 (310)
110 4glp_A Monocyte differentiatio 98.2 1E-06 3.5E-11 87.9 5.4 81 395-482 223-306 (310)
111 3rw6_A Nuclear RNA export fact 98.1 2E-06 6.9E-11 84.3 6.3 78 395-474 169-257 (267)
112 4ay9_X Follicle-stimulating ho 98.1 1.1E-06 3.8E-11 89.4 4.5 96 381-476 9-112 (350)
113 1h6t_A Internalin B; cell adhe 98.1 4.3E-06 1.5E-10 82.8 8.5 80 394-481 110-189 (291)
114 1h6u_A Internalin H; cell adhe 98.1 2.8E-06 9.6E-11 84.9 6.6 58 396-457 173-230 (308)
115 3oja_A Leucine-rich immune mol 98.1 2.4E-06 8.1E-11 91.2 5.5 82 395-481 143-225 (487)
116 3o53_A Protein LRIM1, AGAP0063 98.0 5.3E-06 1.8E-10 83.0 6.7 83 395-482 143-226 (317)
117 4fmz_A Internalin; leucine ric 98.0 9E-06 3.1E-10 82.0 8.3 85 394-484 241-325 (347)
118 3g06_A SSPH2 (leucine-rich rep 98.0 1.3E-05 4.3E-10 88.2 9.7 78 395-483 220-297 (622)
119 1ds9_A Outer arm dynein; leuci 98.0 6.7E-07 2.3E-11 83.2 -1.0 77 395-476 47-123 (198)
120 1o6v_A Internalin A; bacterial 98.0 7.9E-06 2.7E-10 86.3 6.7 83 394-484 307-389 (466)
121 3cvr_A Invasion plasmid antige 98.0 8E-06 2.8E-10 88.7 6.8 67 396-467 180-253 (571)
122 1xeu_A Internalin C; cellular 97.9 9.4E-06 3.2E-10 79.2 6.5 79 394-481 61-139 (263)
123 3cvr_A Invasion plasmid antige 97.9 6.2E-06 2.1E-10 89.6 5.7 69 396-476 80-148 (571)
124 2ca6_A RAN GTPase-activating p 97.9 2.5E-06 8.5E-11 87.8 2.5 88 395-484 215-317 (386)
125 2ast_B S-phase kinase-associat 97.9 2.2E-06 7.5E-11 86.0 1.8 80 396-475 93-175 (336)
126 3bz5_A Internalin-J, INLJ; leu 97.9 2.3E-05 7.9E-10 82.8 9.4 60 395-460 190-249 (457)
127 1o6v_A Internalin A; bacterial 97.9 2.1E-05 7.2E-10 83.0 8.8 76 395-476 67-142 (466)
128 1ds9_A Outer arm dynein; leuci 97.9 3.7E-07 1.3E-11 85.0 -4.4 85 395-485 69-155 (198)
129 3goz_A Leucine-rich repeat-con 97.8 8.2E-06 2.8E-10 83.2 3.4 84 397-482 52-150 (362)
130 2ast_B S-phase kinase-associat 97.8 5.3E-06 1.8E-10 83.2 1.5 85 395-481 141-233 (336)
131 3goz_A Leucine-rich repeat-con 97.8 1.3E-05 4.4E-10 81.8 4.2 85 396-482 80-179 (362)
132 3bz5_A Internalin-J, INLJ; leu 97.7 3.5E-05 1.2E-09 81.4 7.3 74 394-476 62-135 (457)
133 3rw6_A Nuclear RNA export fact 97.7 1.2E-05 4.2E-10 78.6 3.3 80 401-485 148-234 (267)
134 2ca6_A RAN GTPase-activating p 97.7 1.5E-05 5.3E-10 81.7 4.0 86 395-482 59-171 (386)
135 1jl5_A Outer protein YOPM; leu 97.7 3.2E-05 1.1E-09 81.6 6.4 64 396-467 317-382 (454)
136 1jl5_A Outer protein YOPM; leu 97.7 4.5E-05 1.5E-09 80.5 7.3 58 395-458 152-209 (454)
137 1z7x_W Ribonuclease inhibitor; 97.5 2.4E-05 8.1E-10 81.9 1.7 85 396-482 313-410 (461)
138 3g06_A SSPH2 (leucine-rich rep 97.5 6.2E-05 2.1E-09 82.6 4.8 70 394-468 239-308 (622)
139 4ay9_X Follicle-stimulating ho 97.4 9.8E-05 3.4E-09 74.8 5.1 81 394-474 52-134 (350)
140 3rfe_A Platelet glycoprotein I 97.4 0.00021 7.2E-09 62.0 6.2 40 445-487 32-72 (130)
141 1z7x_W Ribonuclease inhibitor; 97.1 7.8E-05 2.7E-09 77.9 0.6 80 396-475 284-377 (461)
142 3un9_A NLR family member X1; l 97.0 0.00019 6.4E-09 73.7 1.5 84 396-481 155-250 (372)
143 3ogk_B Coronatine-insensitive 96.8 0.00037 1.3E-08 75.2 2.5 80 396-476 164-251 (592)
144 1io0_A Tropomodulin; LRR prote 96.8 0.00043 1.5E-08 63.6 2.1 80 396-475 65-158 (185)
145 3ogk_B Coronatine-insensitive 96.5 0.00056 1.9E-08 73.8 1.3 81 396-476 436-521 (592)
146 3un9_A NLR family member X1; l 96.5 0.0007 2.4E-08 69.4 2.0 81 396-476 126-219 (372)
147 1io0_A Tropomodulin; LRR prote 96.5 0.00087 3E-08 61.5 2.0 86 396-481 36-134 (185)
148 3sb4_A Hypothetical leucine ri 96.4 0.0034 1.1E-07 62.7 6.1 78 396-475 226-304 (329)
149 3rfe_A Platelet glycoprotein I 96.4 0.0053 1.8E-07 53.0 6.3 56 400-457 12-68 (130)
150 2p1m_B Transport inhibitor res 96.1 0.0011 3.9E-08 71.3 0.5 80 396-476 432-514 (594)
151 3sb4_A Hypothetical leucine ri 96.0 0.006 2.1E-07 60.9 5.4 78 395-474 249-327 (329)
152 3e4g_A ATP synthase subunit S, 95.9 0.003 1E-07 57.6 2.3 81 396-476 61-147 (176)
153 2p1m_B Transport inhibitor res 95.5 0.0025 8.6E-08 68.6 0.2 79 396-476 130-219 (594)
154 2ra8_A Uncharacterized protein 94.2 0.0082 2.8E-07 61.2 -0.1 71 395-465 251-328 (362)
155 2ra8_A Uncharacterized protein 91.0 0.19 6.5E-06 51.0 4.9 54 395-452 171-227 (362)
156 4fdw_A Leucine rich hypothetic 88.5 0.46 1.6E-05 48.7 5.5 78 395-476 270-353 (401)
157 1pgv_A TMD-1, tropomodulin TMD 88.1 0.22 7.5E-06 46.0 2.5 57 397-453 71-135 (197)
158 1pgv_A TMD-1, tropomodulin TMD 87.3 0.32 1.1E-05 44.8 3.1 81 396-476 41-134 (197)
159 4fdw_A Leucine rich hypothetic 87.2 0.91 3.1E-05 46.5 6.8 78 395-475 299-377 (401)
160 2ks1_B Epidermal growth factor 84.0 0.22 7.7E-06 34.0 0.2 15 496-510 13-27 (44)
161 3e4g_A ATP synthase subunit S, 82.6 0.54 1.8E-05 42.5 2.2 57 420-476 61-122 (176)
162 4fs7_A Uncharacterized protein 79.7 2.6 8.9E-05 42.5 6.5 77 396-476 297-374 (394)
163 4gt6_A Cell surface protein; l 73.5 6.9 0.00024 39.3 7.6 77 396-476 288-365 (394)
164 4h09_A Hypothetical leucine ri 70.6 3.8 0.00013 40.9 4.8 59 414-474 280-339 (379)
165 2l2t_A Receptor tyrosine-prote 69.1 2.1 7.3E-05 29.1 1.7 13 496-508 12-24 (44)
166 4fs7_A Uncharacterized protein 68.6 3 0.0001 42.0 3.6 57 396-454 320-376 (394)
167 2w3j_A Carbohydrate binding mo 63.6 64 0.0022 27.5 10.7 86 76-166 41-130 (145)
168 4h09_A Hypothetical leucine ri 62.4 9.8 0.00034 37.8 6.0 77 396-475 240-317 (379)
169 2o14_A Hypothetical protein YX 60.3 1.4E+02 0.0047 29.7 14.8 86 69-167 71-157 (375)
170 4gt6_A Cell surface protein; l 59.6 18 0.00061 36.2 7.4 77 396-476 265-342 (394)
171 2ks1_B Epidermal growth factor 49.1 6.9 0.00024 26.6 1.4 19 497-515 10-29 (44)
172 2l2t_A Receptor tyrosine-prote 46.1 7.2 0.00025 26.5 1.1 17 499-515 11-28 (44)
173 2w87_A Esterase D, XYL-CBM35; 37.1 1.5E+02 0.0051 24.8 8.6 84 76-164 41-130 (139)
174 2wz8_A Cellulosome protein doc 31.0 2.5E+02 0.0086 24.0 10.2 89 77-166 50-150 (156)
175 1iij_A ERBB-2 receptor protein 30.6 8 0.00027 24.8 -0.6 11 500-510 10-20 (35)
176 2w47_A Lipolytic enzyme, G-D-S 27.5 2.7E+02 0.0092 23.2 12.4 89 73-166 39-132 (144)
177 2l9u_A Receptor tyrosine-prote 22.2 25 0.00086 22.3 0.6 12 504-515 13-24 (40)
178 2vzp_A Aocbm35, EXO-beta-D-glu 21.7 3.2E+02 0.011 22.0 11.3 86 72-162 37-127 (127)
179 2k1a_A Integrin alpha-IIB; sin 20.3 14 0.00048 24.8 -0.9 6 520-525 37-42 (42)
No 1
>2jwp_A Malectin, MGC80075; sugar binding, sugar binding protein; NMR {Xenopus laevis} PDB: 2k46_A* 2kr2_A*
Probab=99.77 E-value=2.4e-18 Score=159.22 Aligned_cols=145 Identities=16% Similarity=0.168 Sum_probs=102.8
Q ss_pred cEEEccCCCCCCccccCCCCeeeecCCCcccCCceeee----cCCCCCccccccceEeeeeCCCCCceEEecCcCCCcce
Q 040922 14 FISIDCGIPENASYSDKITGINYVSDATYVDTGVSHSI----SSGYNNEAVERQFLNLRSFPEGIRNCYTLRPANGDVKF 89 (525)
Q Consensus 14 f~sidCG~~~~~~~~d~~~~~~w~~D~~~~~~g~~~~~----~~~~~~~~~~~~y~t~R~Fp~~~~~cY~~~v~~g~~~y 89 (525)
-+.||||++. .+| ..+|+|.+|..|...|..... ........+..+|+|||+||. ..+|.||+.+++ +|
T Consensus 7 ~~~INcGg~~---~~d-~~gr~w~~D~~~~~~g~~~~~~~~~~~~~~~~~~~~lY~TaR~~~~--~~tY~f~v~~~G-~Y 79 (174)
T 2jwp_A 7 IWAVNAGGES---HVD-VHGIHYRKDPLEGRVGRASDYGMKLPILRSNPEDQVLYQTERYNED--SFGYDIPIKEEG-EY 79 (174)
T ss_dssp EEEEEETSSS---EEE-TTTEEECSSCSSTTCCCCCCCCTTSCCSSSCHHHHHTTTCCCCCCS--CEEEEEECCSCE-EE
T ss_pred EEEEECCCCC---ccC-CCCCEEcCCcCcccCCcccccccceEecccCCCCchhhhhhccCCC--CeEEEEEeCCCe-EE
Confidence 4789999864 244 468999999876533322111 111111234569999999965 589999998877 99
Q ss_pred EEEEEeecCCCCCCCCCCeeEEEeCceE-EEEEEecc---CCCcEEEEEEEec-------------CCCcEEEEEEeCCC
Q 040922 90 LIRASFMYGNYDGQDMPPSFDLMLGADV-WDSVQLQD---SDGIITKEIIHMP-------------NKGYIHVCLVHTYS 152 (525)
Q Consensus 90 liR~~F~y~nyd~~~~~p~F~v~~~~~~-~~~v~~~~---~~~~~~~E~i~~~-------------~~~~l~vcf~~~~~ 152 (525)
+|||||..-.|... ....|||++++.. ...+++.. ...++.+|+.+.+ .++.|.|+|.|...
T Consensus 80 ~VrLhF~ei~~~~~-~~rvFdV~ing~~~l~~fdi~~~ag~~~~~~~~~~~~v~~~~l~i~~~~~~~~g~L~I~f~p~~~ 158 (174)
T 2jwp_A 80 VLVLKFAEVYFAQS-QQKVFDVRVNGHTVVKDLDIFDRVGHSTAHDEIIPISIKKGKLSVQGEVSTFTGKLSVEFVKGYY 158 (174)
T ss_dssp EEEEEEECCSCCCS-SSSCEEEEETTEEEEEEECHHHHHSSSSCEEEEEEEEEETTEEEETTEEEECCSEEEEEEECSSS
T ss_pred EEEEEEeccccCCC-CCeEeEEEECCEEeecCcCHHHhhCCCeeEEEEEEEEEecCceeeeeeecccCCeEEEEEeccCC
Confidence 99999986666543 2368999999855 44455432 2346889888763 56689999998767
Q ss_pred CCceeEEEEEEEcC
Q 040922 153 GTPFISALELRPIT 166 (525)
Q Consensus 153 ~~pFIn~iEl~~lp 166 (525)
..||||||||++-+
T Consensus 159 ~~a~inaIEI~~~~ 172 (174)
T 2jwp_A 159 DNPKVCALFIMKGT 172 (174)
T ss_dssp CSSSEEEEEEESSC
T ss_pred CCcEEEEEEEEeCc
Confidence 78999999999754
No 2
>2jwp_A Malectin, MGC80075; sugar binding, sugar binding protein; NMR {Xenopus laevis} PDB: 2k46_A* 2kr2_A*
Probab=99.76 E-value=4.7e-19 Score=163.93 Aligned_cols=148 Identities=14% Similarity=0.110 Sum_probs=99.3
Q ss_pred eeEEeeecCCCCCCCccCCCCCCCcccccCCCCC--ceeeccceeecCCCCCCCCChHHHHhhccccCCCCeeeEEEEe-
Q 040922 178 SRYFRWDVGSTTNETFRYPDDVYDRIWSPNSFYY--WAPISTSSNVDSTGTINFNLPSTVMQTAAIPANGVTSLEFHWV- 254 (525)
Q Consensus 178 ~~~~R~n~G~~~~~~i~~~~D~~~R~W~~d~~~~--~~~~~~~~~i~~~~~~~~~~P~~V~~TA~~~~~~~~~~~~~w~- 254 (525)
++++|+||||+. +. |..+|.|.+|.... .........+.. ...+.+|..|||||+.+.. +++|.
T Consensus 5 ~~~~~INcGg~~---~~---d~~gr~w~~D~~~~~~g~~~~~~~~~~~--~~~~~~~~~lY~TaR~~~~-----~~tY~f 71 (174)
T 2jwp_A 5 KVIWAVNAGGES---HV---DVHGIHYRKDPLEGRVGRASDYGMKLPI--LRSNPEDQVLYQTERYNED-----SFGYDI 71 (174)
T ss_dssp HEEEEEEETSSS---EE---ETTTEEECSSCSSTTCCCCCCCCTTSCC--SSSCHHHHHTTTCCCCCCS-----CEEEEE
T ss_pred cEEEEEECCCCC---cc---CCCCCEEcCCcCcccCCcccccccceEe--cccCCCCchhhhhhccCCC-----CeEEEE
Confidence 689999999953 22 57899999995321 110000111111 2235789999999988642 67777
Q ss_pred ecCCCceEEEEEEeecccccCCCCceEEEEEEECCeeeccCcccceee--eeEEEEeeec--------------cccceE
Q 040922 255 PVNRTFKYYVYMHFSEVGSDLAKNQTREMYIYFNGEKWHGPLSPSHLE--TVTVYTTSAM--------------TNYSRY 318 (525)
Q Consensus 255 ~v~~~~~y~v~lhF~Ei~~~~~~~~~R~F~I~in~~~~~~~~~p~~~~--~~~~~~~~~~--------------~~~~~l 318 (525)
+++++..|+|||||||+. ....++|+|+|||||+.+..++++.... ..+++..+.+ ...+.+
T Consensus 72 ~v~~~G~Y~VrLhF~ei~--~~~~~~rvFdV~ing~~~l~~fdi~~~ag~~~~~~~~~~~~v~~~~l~i~~~~~~~~g~L 149 (174)
T 2jwp_A 72 PIKEEGEYVLVLKFAEVY--FAQSQQKVFDVRVNGHTVVKDLDIFDRVGHSTAHDEIIPISIKKGKLSVQGEVSTFTGKL 149 (174)
T ss_dssp ECCSCEEEEEEEEEECCS--CCCSSSSCEEEEETTEEEEEEECHHHHHSSSSCEEEEEEEEEETTEEEETTEEEECCSEE
T ss_pred EeCCCeEEEEEEEEeccc--cCCCCCeEeEEEECCEEeecCcCHHHhhCCCeeEEEEEEEEEecCceeeeeeecccCCeE
Confidence 688888999999999998 4567899999999999987666653211 0111221111 135678
Q ss_pred EEEEeecCCCCchhHhhhhhhccc
Q 040922 319 DIEIRATDKSSLPPILNALEVYQV 342 (525)
Q Consensus 319 ~l~l~~t~~s~lpp~ln~leil~~ 342 (525)
++++.+. ..-.|++||+|+++.
T Consensus 150 ~I~f~p~--~~~~a~inaIEI~~~ 171 (174)
T 2jwp_A 150 SVEFVKG--YYDNPKVCALFIMKG 171 (174)
T ss_dssp EEEEECS--SSCSSSEEEEEEESS
T ss_pred EEEEecc--CCCCcEEEEEEEEeC
Confidence 8888863 234689999999874
No 3
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.35 E-value=1.7e-12 Score=118.95 Aligned_cols=105 Identities=25% Similarity=0.249 Sum_probs=90.3
Q ss_pred cccccccCCCCC------CCCCceEEecCCCCCccCCCchhhccCCCcCEEEcCCCCCCCcCchhccCCCCCCEEeCCCC
Q 040922 381 HLWQGLNCSYDD------NQPPRIISLNLSSSGISGEIDPYIFSLTSIESLDLSNNSLTGLVPDFLAELESLTVLNLSGN 454 (525)
Q Consensus 381 ~~w~gv~c~~~~------~~~~~L~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N 454 (525)
+.|..+.|+... ..++.|+.|+|++|+|++..|..|..+++|+.|+|++|+|++..+..|..+++|++|+|++|
T Consensus 9 C~~~~l~~s~n~l~~ip~~~~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 9 CSGTTVDCSGKSLASVPTGIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp EETTEEECTTSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cCCCEEEeCCCCcCccCccCCCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 467778887543 23578999999999999888889999999999999999999888888999999999999999
Q ss_pred cCCCCCChhhhcCCCCcEEEEEecCCCCCCCCC
Q 040922 455 NLQGSLPAGLVEKANNRSLSLSVERNPNFCLSD 487 (525)
Q Consensus 455 ~L~g~iP~~l~~l~~l~~l~L~l~~N~~~C~~~ 487 (525)
+|++..|..+.++.+|+.|+ +.+|++.|.|.
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~--L~~N~~~c~c~ 119 (170)
T 3g39_A 89 QLKSIPRGAFDNLKSLTHIW--LLNNPWDCACS 119 (170)
T ss_dssp CCCCCCTTTTTTCTTCCEEE--CCSSCBCTTBG
T ss_pred ccCEeCHHHhcCCCCCCEEE--eCCCCCCCCch
Confidence 99976666788999988765 55999999884
No 4
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.34 E-value=1e-12 Score=132.34 Aligned_cols=122 Identities=27% Similarity=0.458 Sum_probs=74.9
Q ss_pred cchhhHHHHHHhhhhcc---cCCCCC--CCCCCCcccccccccCCCCCCCCCceEEecCCCCCccC--CCchhhccCCCc
Q 040922 350 THQQDVDAITNIKSKYE---VKRDWQ--GDPCTPKVHLWQGLNCSYDDNQPPRIISLNLSSSGISG--EIDPYIFSLTSI 422 (525)
Q Consensus 350 t~~~d~~al~~l~~~~~---~~~~w~--g~pc~p~~~~w~gv~c~~~~~~~~~L~~L~Ls~n~l~g--~ip~~~~~L~~L 422 (525)
..+.|..||.++|..+. ...+|. .+||. ..|.||.|.... ...+++.|+|++|++++ .+|..+.++++|
T Consensus 3 c~~~~~~aL~~~k~~~~~~~~l~~W~~~~~~C~---~~w~gv~C~~~~-~~~~l~~L~L~~~~l~~~~~~~~~l~~l~~L 78 (313)
T 1ogq_A 3 CNPQDKQALLQIKKDLGNPTTLSSWLPTTDCCN---RTWLGVLCDTDT-QTYRVNNLDLSGLNLPKPYPIPSSLANLPYL 78 (313)
T ss_dssp SCHHHHHHHHHHHHHTTCCGGGTTCCTTSCTTT---TCSTTEEECCSS-SCCCEEEEEEECCCCSSCEECCGGGGGCTTC
T ss_pred CCHHHHHHHHHHHHhcCCcccccCCCCCCCCCc---CCCcceEeCCCC-CCceEEEEECCCCCccCCcccChhHhCCCCC
Confidence 45678899999998875 345795 36662 149999997532 12356666666666666 566666666666
Q ss_pred CEEEcCC-CCCCCcCchhccCCCCCCEEeCCCCcCCCCCChhhhcCCCCcEEEE
Q 040922 423 ESLDLSN-NSLTGLVPDFLAELESLTVLNLSGNNLQGSLPAGLVEKANNRSLSL 475 (525)
Q Consensus 423 ~~L~Ls~-N~l~g~iP~~l~~l~~L~~L~Ls~N~L~g~iP~~l~~l~~l~~l~L 475 (525)
+.|+|++ |.+.+.+|..++.+++|++|+|++|+++|.+|..+.++.+|+.|++
T Consensus 79 ~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 132 (313)
T 1ogq_A 79 NFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDF 132 (313)
T ss_dssp SEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEEC
T ss_pred CeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeC
Confidence 6666663 5555555555555555555555555555555555555555554443
No 5
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.25 E-value=6e-12 Score=117.58 Aligned_cols=92 Identities=22% Similarity=0.363 Sum_probs=84.8
Q ss_pred CCCceEEecCCCCCccCCCchhhccCCCcCEEEcCCCCCCCcCchhccCCCCCCEEeCCCCcCCCCCChhhhcCCCCcEE
Q 040922 394 QPPRIISLNLSSSGISGEIDPYIFSLTSIESLDLSNNSLTGLVPDFLAELESLTVLNLSGNNLQGSLPAGLVEKANNRSL 473 (525)
Q Consensus 394 ~~~~L~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~L~g~iP~~l~~l~~l~~l 473 (525)
.+++|+.|+|++|+|++..|..|..+++|+.|+|++|+|++..|..|..+++|++|+|++|++++.+|..+..+.+|+.|
T Consensus 52 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 131 (192)
T 1w8a_A 52 RLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSL 131 (192)
T ss_dssp GCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEE
T ss_pred cCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEE
Confidence 35789999999999998889999999999999999999999999999999999999999999999999999999998875
Q ss_pred EEEecCCCCCCCCC
Q 040922 474 SLSVERNPNFCLSD 487 (525)
Q Consensus 474 ~L~l~~N~~~C~~~ 487 (525)
+ +.+|++.|+|.
T Consensus 132 ~--L~~N~l~c~c~ 143 (192)
T 1w8a_A 132 N--LASNPFNCNCH 143 (192)
T ss_dssp E--CTTCCBCCSGG
T ss_pred E--eCCCCccCcCc
Confidence 5 56999999874
No 6
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.24 E-value=1.8e-11 Score=112.67 Aligned_cols=92 Identities=21% Similarity=0.231 Sum_probs=81.1
Q ss_pred CCCceEEecCCCCCccCCCchhhccCCCcCEEEcCCCCCCCcCchhccCCCCCCEEeCCCCcCCCCCChhhhcCCCCcEE
Q 040922 394 QPPRIISLNLSSSGISGEIDPYIFSLTSIESLDLSNNSLTGLVPDFLAELESLTVLNLSGNNLQGSLPAGLVEKANNRSL 473 (525)
Q Consensus 394 ~~~~L~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~L~g~iP~~l~~l~~l~~l 473 (525)
.+++|+.|+|++|+|++..|..|..+++|+.|+|++|+|++..+..|..+++|+.|+|++|+|++..+..+..+.+|+.|
T Consensus 31 ~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L 110 (174)
T 2r9u_A 31 IPTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHI 110 (174)
T ss_dssp CCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEE
T ss_pred cCCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEE
Confidence 35789999999999998889999999999999999999998777778999999999999999996555558889999886
Q ss_pred EEEecCCCCCCCCC
Q 040922 474 SLSVERNPNFCLSD 487 (525)
Q Consensus 474 ~L~l~~N~~~C~~~ 487 (525)
+ +.+|++.|.|.
T Consensus 111 ~--L~~N~~~c~~~ 122 (174)
T 2r9u_A 111 Y--LYNNPWDCECR 122 (174)
T ss_dssp E--CCSSCBCTTBG
T ss_pred E--eCCCCcccccc
Confidence 5 56999999874
No 7
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.21 E-value=1e-11 Score=141.51 Aligned_cols=123 Identities=17% Similarity=0.256 Sum_probs=102.3
Q ss_pred ccchhhHHHHHHhhhhcccCCCCCCCC----CCCccccc------------ccccCCCCCCCCCceEEecCCCCCccCCC
Q 040922 349 LTHQQDVDAITNIKSKYEVKRDWQGDP----CTPKVHLW------------QGLNCSYDDNQPPRIISLNLSSSGISGEI 412 (525)
Q Consensus 349 ~t~~~d~~al~~l~~~~~~~~~w~g~p----c~p~~~~w------------~gv~c~~~~~~~~~L~~L~Ls~n~l~g~i 412 (525)
.....|..||.++|..+... +|++.. +.|..|.| .||.|+.. .+++.|+|++|+++|.+
T Consensus 265 ~~~~~d~~ALl~~k~~l~~~-~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~~----~~V~~L~Ls~~~L~G~i 339 (876)
T 4ecn_A 265 AEYIKDYKALKAIWEALDGK-NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNN----GRVTGLSLAGFGAKGRV 339 (876)
T ss_dssp CHHHHHHHHHHHHHHHTTGG-GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECTT----SCEEEEECTTTCCEEEE
T ss_pred ccchHHHHHHHHHHHHcCCC-CCCcCCCcccccCCccccccccccccccCcCceEecCC----CCEEEEECccCCCCCcC
Confidence 34567899999999888543 785322 11112479 99999863 58999999999999999
Q ss_pred chhhccCCCcCEEEc-CCCCCCCc--------------------------------------------------------
Q 040922 413 DPYIFSLTSIESLDL-SNNSLTGL-------------------------------------------------------- 435 (525)
Q Consensus 413 p~~~~~L~~L~~L~L-s~N~l~g~-------------------------------------------------------- 435 (525)
|+++++|++|+.|+| ++|.+.|.
T Consensus 340 p~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~~~~i~~ 419 (876)
T 4ecn_A 340 PDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKK 419 (876)
T ss_dssp CGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTTSCCCCC
T ss_pred chHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCcccccccc
Confidence 999999999999999 88866554
Q ss_pred --------------------CchhccCCCCCCEEeCCCCcCCC-----------------CCChhhh--cCCCCcEEEEE
Q 040922 436 --------------------VPDFLAELESLTVLNLSGNNLQG-----------------SLPAGLV--EKANNRSLSLS 476 (525)
Q Consensus 436 --------------------iP~~l~~l~~L~~L~Ls~N~L~g-----------------~iP~~l~--~l~~l~~l~L~ 476 (525)
+|..+++|++|+.|+|++|+|+| .+|+.++ ++.+|+.|+|+
T Consensus 420 ~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls 499 (876)
T 4ecn_A 420 DSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELY 499 (876)
T ss_dssp CCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEE
T ss_pred ccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECc
Confidence 88899999999999999999998 4999988 99999998876
No 8
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.21 E-value=2e-11 Score=114.33 Aligned_cols=91 Identities=24% Similarity=0.339 Sum_probs=80.3
Q ss_pred CCceEEecCCCCCccCCCchhhccCCCcCEEEcCCCCCCCcCchhccCCCCCCEEeCCCCcCCCCCChhhhcCCCCcEEE
Q 040922 395 PPRIISLNLSSSGISGEIDPYIFSLTSIESLDLSNNSLTGLVPDFLAELESLTVLNLSGNNLQGSLPAGLVEKANNRSLS 474 (525)
Q Consensus 395 ~~~L~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~L~g~iP~~l~~l~~l~~l~ 474 (525)
+++|+.|+|++|+|++..+..|..+++|+.|+|++|+|++..|..|..+++|+.|+|++|+|++..+..+..+.+|+.|+
T Consensus 53 l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 132 (193)
T 2wfh_A 53 YKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLA 132 (193)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEE
T ss_pred ccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEE
Confidence 46899999999999987778899999999999999999998889999999999999999999955555677888888755
Q ss_pred EEecCCCCCCCCC
Q 040922 475 LSVERNPNFCLSD 487 (525)
Q Consensus 475 L~l~~N~~~C~~~ 487 (525)
+.+||+.|+|.
T Consensus 133 --L~~N~~~C~c~ 143 (193)
T 2wfh_A 133 --IGANPLYCDCN 143 (193)
T ss_dssp --CCSSCEECSGG
T ss_pred --eCCCCeecCCc
Confidence 56999999984
No 9
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.20 E-value=2.5e-11 Score=115.99 Aligned_cols=92 Identities=21% Similarity=0.245 Sum_probs=84.5
Q ss_pred CCCceEEecCCCCCccCCCchhhccCCCcCEEEcCCCCCCCcCchhccCCCCCCEEeCCCCcCCCCCChhhhcCCCCcEE
Q 040922 394 QPPRIISLNLSSSGISGEIDPYIFSLTSIESLDLSNNSLTGLVPDFLAELESLTVLNLSGNNLQGSLPAGLVEKANNRSL 473 (525)
Q Consensus 394 ~~~~L~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~L~g~iP~~l~~l~~l~~l 473 (525)
.+++|+.|+|++|++++..+..|..+++|+.|+|++|++++..|..+..+++|+.|+|++|++++..|..+..+.+|+.|
T Consensus 79 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 158 (220)
T 2v70_A 79 GASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTL 158 (220)
T ss_dssp TCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEE
T ss_pred CCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEE
Confidence 35789999999999998888889999999999999999999999999999999999999999998889999999999876
Q ss_pred EEEecCCCCCCCCC
Q 040922 474 SLSVERNPNFCLSD 487 (525)
Q Consensus 474 ~L~l~~N~~~C~~~ 487 (525)
+ +.+|++.|+|.
T Consensus 159 ~--L~~N~l~c~c~ 170 (220)
T 2v70_A 159 N--LLANPFNCNCY 170 (220)
T ss_dssp E--CCSCCEECSGG
T ss_pred E--ecCcCCcCCCc
Confidence 5 56999999884
No 10
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.20 E-value=1.9e-11 Score=138.12 Aligned_cols=98 Identities=29% Similarity=0.476 Sum_probs=88.8
Q ss_pred CCCceEEecCCCCCccCCCchhhccCCCcCEEEcCCCCCCCcCchhccCCCCCCEEeCCCCcCCCCCChhhhcCCCCcEE
Q 040922 394 QPPRIISLNLSSSGISGEIDPYIFSLTSIESLDLSNNSLTGLVPDFLAELESLTVLNLSGNNLQGSLPAGLVEKANNRSL 473 (525)
Q Consensus 394 ~~~~L~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~L~g~iP~~l~~l~~l~~l 473 (525)
.++.|+.|+|++|+++|.+|.+++.+++|+.|+|++|+++|.+|..++.+++|+.|||++|+++|.+|..+.++.+|+.|
T Consensus 630 ~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L 709 (768)
T 3rgz_A 630 NNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEI 709 (768)
T ss_dssp SSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEE
T ss_pred ccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEE
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred EEE---------------------ecCCCCCCCCC--ccCC
Q 040922 474 SLS---------------------VERNPNFCLSD--SCKK 491 (525)
Q Consensus 474 ~L~---------------------l~~N~~~C~~~--~c~~ 491 (525)
+++ +.+||++|+.. .|..
T Consensus 710 ~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l~~C~~ 750 (768)
T 3rgz_A 710 DLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPRCDP 750 (768)
T ss_dssp ECCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTTSCCCCS
T ss_pred ECcCCcccccCCCchhhccCCHHHhcCCchhcCCCCcCCCC
Confidence 875 55799999864 6743
No 11
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.18 E-value=7.9e-11 Score=113.07 Aligned_cols=44 Identities=23% Similarity=0.181 Sum_probs=20.1
Q ss_pred CCCCCCEEeCCCCcCCCCCChhhhcCCCCcEEEEEecCCCCCCCCC
Q 040922 442 ELESLTVLNLSGNNLQGSLPAGLVEKANNRSLSLSVERNPNFCLSD 487 (525)
Q Consensus 442 ~l~~L~~L~Ls~N~L~g~iP~~l~~l~~l~~l~L~l~~N~~~C~~~ 487 (525)
.+++|++|+|++|+|++..+..+..+.+|+. |.+.+||+.|+|.
T Consensus 133 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~--L~l~~N~~~c~c~ 176 (229)
T 3e6j_A 133 RLTHLTHLALDQNQLKSIPHGAFDRLSSLTH--AYLFGNPWDCECR 176 (229)
T ss_dssp GCTTCSEEECCSSCCCCCCTTTTTTCTTCCE--EECTTSCBCTTBG
T ss_pred cCCCCCEEECCCCcCCccCHHHHhCCCCCCE--EEeeCCCccCCcc
Confidence 3333333334444333222223334444443 3455778777763
No 12
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.18 E-value=3.6e-11 Score=122.44 Aligned_cols=103 Identities=22% Similarity=0.255 Sum_probs=85.1
Q ss_pred ccccccCCCC-C-------CCCCceEEecCCC-CCccCCCchhhccCCCcCEEEcCCCCCCCcCchhccCCCCCCEEeCC
Q 040922 382 LWQGLNCSYD-D-------NQPPRIISLNLSS-SGISGEIDPYIFSLTSIESLDLSNNSLTGLVPDFLAELESLTVLNLS 452 (525)
Q Consensus 382 ~w~gv~c~~~-~-------~~~~~L~~L~Ls~-n~l~g~ip~~~~~L~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls 452 (525)
.|..+.|+.. + ..+++|+.|+|++ |+|++..+..|..|++|+.|+|++|+|++..|..|..|++|+.|+|+
T Consensus 9 ~~~~v~~~~~n~l~~ip~l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 9 GSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp SSSCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred cCCEEEcCCCCCCCccCCCCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence 5777888765 2 2346799999996 99998878889999999999999999999999999999999999999
Q ss_pred CCcCCCCCChhhhcCCCCcEEEEEecCCCCCCCCC
Q 040922 453 GNNLQGSLPAGLVEKANNRSLSLSVERNPNFCLSD 487 (525)
Q Consensus 453 ~N~L~g~iP~~l~~l~~l~~l~L~l~~N~~~C~~~ 487 (525)
+|+|++ +|..+.....|+.| .+.+|++.|+|.
T Consensus 89 ~N~l~~-~~~~~~~~~~L~~l--~l~~N~~~c~c~ 120 (347)
T 2ifg_A 89 FNALES-LSWKTVQGLSLQEL--VLSGNPLHCSCA 120 (347)
T ss_dssp SSCCSC-CCSTTTCSCCCCEE--ECCSSCCCCCGG
T ss_pred CCccce-eCHHHcccCCceEE--EeeCCCccCCCc
Confidence 999995 55554433347665 566999999983
No 13
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.16 E-value=2.6e-11 Score=134.00 Aligned_cols=117 Identities=21% Similarity=0.296 Sum_probs=99.1
Q ss_pred cchhhHHHHHHhhhhcccC------------CCCCC--CCCCCccccc---ccccCCCCCCCCCceEEecCCCCCccCCC
Q 040922 350 THQQDVDAITNIKSKYEVK------------RDWQG--DPCTPKVHLW---QGLNCSYDDNQPPRIISLNLSSSGISGEI 412 (525)
Q Consensus 350 t~~~d~~al~~l~~~~~~~------------~~w~g--~pc~p~~~~w---~gv~c~~~~~~~~~L~~L~Ls~n~l~g~i 412 (525)
....|..||.+++..++.. .+|+. ++| .| .||.|+.. .+++.|+|++++++|.+
T Consensus 27 ~~~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~~~~~~c-----~w~~~~GV~C~~~----~~V~~L~L~~~~l~g~l 97 (636)
T 4eco_A 27 EYIKDYLALKEIWDALNGKNWSQQGFGTQPGANWNFNKELD-----MWGAQPGVSLNSN----GRVTGLSLEGFGASGRV 97 (636)
T ss_dssp HHHHHHHHHHHHHHHTTGGGCCCCC------CCCCCSSCGG-----GTTCCTTEEECTT----CCEEEEECTTSCCEEEE
T ss_pred hHHHHHHHHHHHHHHcCCCCcccCCcCCccCCCCCCCCCcc-----cccCCCCeEEcCC----CCEEEEEecCcccCCcC
Confidence 3456888898888766421 25752 344 79 99999764 59999999999999999
Q ss_pred chhhccCCCcCEEEcCCCC-------------------------------------------------------------
Q 040922 413 DPYIFSLTSIESLDLSNNS------------------------------------------------------------- 431 (525)
Q Consensus 413 p~~~~~L~~L~~L~Ls~N~------------------------------------------------------------- 431 (525)
|+++++|++|+.|+|++|.
T Consensus 98 p~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~ 177 (636)
T 4eco_A 98 PDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKK 177 (636)
T ss_dssp CGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCC
T ss_pred ChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcCcccccccc
Confidence 9999999999999999984
Q ss_pred -----------------CCCcCchhccCCCCCCEEeCCCCcCCCC-----------------CChhhh--cCCCCcEEEE
Q 040922 432 -----------------LTGLVPDFLAELESLTVLNLSGNNLQGS-----------------LPAGLV--EKANNRSLSL 475 (525)
Q Consensus 432 -----------------l~g~iP~~l~~l~~L~~L~Ls~N~L~g~-----------------iP~~l~--~l~~l~~l~L 475 (525)
++| +|..++++++|++|+|++|+++|. +|+.++ ++.+|+.|++
T Consensus 178 ~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L 256 (636)
T 4eco_A 178 SSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEV 256 (636)
T ss_dssp CCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEE
T ss_pred ccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEe
Confidence 445 899999999999999999999986 999999 9999999887
Q ss_pred E
Q 040922 476 S 476 (525)
Q Consensus 476 ~ 476 (525)
+
T Consensus 257 ~ 257 (636)
T 4eco_A 257 Y 257 (636)
T ss_dssp E
T ss_pred c
Confidence 6
No 14
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.13 E-value=5.1e-11 Score=130.15 Aligned_cols=92 Identities=24% Similarity=0.217 Sum_probs=84.3
Q ss_pred CCCceEEecCCCCCccCCCchhhccCCCcCEEEcCCCCCCCcCchhccCCCCCCEEeCCCCcCCCCCChhhhcC-CCCcE
Q 040922 394 QPPRIISLNLSSSGISGEIDPYIFSLTSIESLDLSNNSLTGLVPDFLAELESLTVLNLSGNNLQGSLPAGLVEK-ANNRS 472 (525)
Q Consensus 394 ~~~~L~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~L~g~iP~~l~~l-~~l~~ 472 (525)
.+++|+.|+|++|+|++..|..|..|++|+.|+|++|+|++..|..|+.+++|++|+|++|+|++..|..+..+ .+|+.
T Consensus 492 ~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~ 571 (635)
T 4g8a_A 492 ELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAF 571 (635)
T ss_dssp TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCE
T ss_pred hccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCE
Confidence 46789999999999998889999999999999999999999999999999999999999999999999999887 57877
Q ss_pred EEEEecCCCCCCCCC
Q 040922 473 LSLSVERNPNFCLSD 487 (525)
Q Consensus 473 l~L~l~~N~~~C~~~ 487 (525)
| ++++|||.|+|.
T Consensus 572 L--~L~~Np~~C~C~ 584 (635)
T 4g8a_A 572 L--NLTQNDFACTCE 584 (635)
T ss_dssp E--ECTTCCBCCSGG
T ss_pred E--EeeCCCCcccCC
Confidence 5 566999999984
No 15
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.13 E-value=8.3e-11 Score=112.26 Aligned_cols=92 Identities=23% Similarity=0.250 Sum_probs=81.3
Q ss_pred CCCceEEecCCCCCccCCCchhhccCCCcCEEEcCCCCCCCcCchhccCCCCCCEEeCCCCcCCCCCChhhhcCCCCcEE
Q 040922 394 QPPRIISLNLSSSGISGEIDPYIFSLTSIESLDLSNNSLTGLVPDFLAELESLTVLNLSGNNLQGSLPAGLVEKANNRSL 473 (525)
Q Consensus 394 ~~~~L~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~L~g~iP~~l~~l~~l~~l 473 (525)
.+++|+.|+|++|+|+...+..|..+++|+.|+|++|++.+..|..|..+++|+.|+|++|++++..+..+..+.+|+.|
T Consensus 78 ~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 157 (220)
T 2v9t_B 78 GLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTM 157 (220)
T ss_dssp TCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEE
T ss_pred CCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEE
Confidence 35789999999999995555558999999999999999999999999999999999999999997777778888888875
Q ss_pred EEEecCCCCCCCCC
Q 040922 474 SLSVERNPNFCLSD 487 (525)
Q Consensus 474 ~L~l~~N~~~C~~~ 487 (525)
+ +.+|++.|+|.
T Consensus 158 ~--L~~N~~~c~c~ 169 (220)
T 2v9t_B 158 H--LAQNPFICDCH 169 (220)
T ss_dssp E--CCSSCEECSGG
T ss_pred E--eCCCCcCCCCc
Confidence 5 56999999884
No 16
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.11 E-value=1.6e-10 Score=105.95 Aligned_cols=90 Identities=23% Similarity=0.240 Sum_probs=64.1
Q ss_pred CCceEEecCCCCCccCCCchhhccCCCcCEEEcCCCCCCCcCchhccCCCCCCEEeCCCCcCCCCCChhhhcCCCCcEEE
Q 040922 395 PPRIISLNLSSSGISGEIDPYIFSLTSIESLDLSNNSLTGLVPDFLAELESLTVLNLSGNNLQGSLPAGLVEKANNRSLS 474 (525)
Q Consensus 395 ~~~L~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~L~g~iP~~l~~l~~l~~l~ 474 (525)
+++|+.|+|++|++++..+..+..+++|+.|+|++|++++..+..+..+++|+.|+|++|++++..+..+..+.+|+.|+
T Consensus 51 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~ 130 (177)
T 2o6r_A 51 LTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIW 130 (177)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEE
T ss_pred cccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEE
Confidence 45677777777777755555567777788888888888766666677778888888888888744343456677777654
Q ss_pred EEecCCCCCCCC
Q 040922 475 LSVERNPNFCLS 486 (525)
Q Consensus 475 L~l~~N~~~C~~ 486 (525)
+.+|++.|.|
T Consensus 131 --l~~N~~~~~~ 140 (177)
T 2o6r_A 131 --LHTNPWDCSC 140 (177)
T ss_dssp --CCSSCBCCCH
T ss_pred --ecCCCeeccC
Confidence 4588888876
No 17
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.06 E-value=1.6e-10 Score=115.07 Aligned_cols=91 Identities=25% Similarity=0.319 Sum_probs=80.7
Q ss_pred CCCceEEecCCCCCccCCCchhhccCCCcCEEEcCCCCCCCcCchhccCCCCCCEEeCCCCcCCCCCChhhhcCCCCcEE
Q 040922 394 QPPRIISLNLSSSGISGEIDPYIFSLTSIESLDLSNNSLTGLVPDFLAELESLTVLNLSGNNLQGSLPAGLVEKANNRSL 473 (525)
Q Consensus 394 ~~~~L~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~L~g~iP~~l~~l~~l~~l 473 (525)
.+++|+.|+|++|++++..+..|..+++|+.|+|++|+|++..+..+..+++|+.|+|++|+|+ .+|..+..+.+|+.+
T Consensus 122 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l 200 (290)
T 1p9a_G 122 GLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFA 200 (290)
T ss_dssp TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEE
T ss_pred CCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeE
Confidence 3578999999999999776777899999999999999999777777899999999999999999 899999888888875
Q ss_pred EEEecCCCCCCCCC
Q 040922 474 SLSVERNPNFCLSD 487 (525)
Q Consensus 474 ~L~l~~N~~~C~~~ 487 (525)
+ +.+|||.|+|.
T Consensus 201 ~--L~~Np~~C~c~ 212 (290)
T 1p9a_G 201 F--LHGNPWLCNCE 212 (290)
T ss_dssp E--CCSCCBCCSGG
T ss_pred E--eCCCCccCcCc
Confidence 5 56999999884
No 18
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.01 E-value=9.2e-10 Score=102.86 Aligned_cols=99 Identities=24% Similarity=0.261 Sum_probs=85.3
Q ss_pred cccccccCCCCC------CCCCceEEecCCCCCccCCCchhhccCCCcCEEEcCCCCCCCcCchhccCCCCCCEEeCCCC
Q 040922 381 HLWQGLNCSYDD------NQPPRIISLNLSSSGISGEIDPYIFSLTSIESLDLSNNSLTGLVPDFLAELESLTVLNLSGN 454 (525)
Q Consensus 381 ~~w~gv~c~~~~------~~~~~L~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N 454 (525)
+.|..+.|+..+ +.++.|+.|+|++|+++ .+|..|..+++|+.|+|++|++++..+..|..+++|+.|+|++|
T Consensus 10 C~~~~l~~~~~~l~~ip~~~~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 10 CLDTVVRCSNKGLKVLPKGIPRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp EETTEEECTTSCCSSCCSCCCTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred eCCCEEEcCCCCCCcCCCCCCCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 456777886543 23568999999999998 78899999999999999999999988899999999999999999
Q ss_pred cCCCCCChhhhcCCCCcEEEEEecCCCC
Q 040922 455 NLQGSLPAGLVEKANNRSLSLSVERNPN 482 (525)
Q Consensus 455 ~L~g~iP~~l~~l~~l~~l~L~l~~N~~ 482 (525)
+|++..|..+..+.+|+.|+|+ +|..
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~--~N~l 114 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLH--GNDI 114 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECC--SSCC
T ss_pred ccCEeCHHHhCCCCCCCEEECC--CCCC
Confidence 9998878889999999987665 5654
No 19
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=98.99 E-value=2.1e-10 Score=129.49 Aligned_cols=116 Identities=27% Similarity=0.422 Sum_probs=74.1
Q ss_pred cchhhHHHHHHhhhhcc---cCCCCC-C-CCCCCcccccccccCCCCCCCCCceEEecCCCCCccCC---Cch-------
Q 040922 350 THQQDVDAITNIKSKYE---VKRDWQ-G-DPCTPKVHLWQGLNCSYDDNQPPRIISLNLSSSGISGE---IDP------- 414 (525)
Q Consensus 350 t~~~d~~al~~l~~~~~---~~~~w~-g-~pc~p~~~~w~gv~c~~~~~~~~~L~~L~Ls~n~l~g~---ip~------- 414 (525)
..+.|..||.++|+.+. ...+|. + ++| .|.||.|+. .+++.|+|+++.+.|. +|+
T Consensus 9 ~~~~~~~all~~k~~~~~~~~l~~W~~~~~~C-----~w~gv~C~~-----~~v~~L~L~~~~l~g~~~~l~~~l~~L~~ 78 (768)
T 3rgz_A 9 SLYREIHQLISFKDVLPDKNLLPDWSSNKNPC-----TFDGVTCRD-----DKVTSIDLSSKPLNVGFSAVSSSLLSLTG 78 (768)
T ss_dssp CHHHHHHHHHHHHTTCSCTTSSTTCCTTSCGG-----GSTTEEEET-----TEEEEEECTTSCCCEEHHHHHHHTTTCTT
T ss_pred CCHHHHHHHHHHHhhCCCcccccCCCCCCCCc-----CCcceEECC-----CcEEEEECCCCCcCCccCccChhHhccCc
Confidence 35678899999998764 456895 3 555 899999972 4777777777777765 443
Q ss_pred ----------------hhccCCCcCEEEcCCCCCCCcCch--hccCCCCCCEEeCCCCcCCCCCChhh-hcCCCCcEEEE
Q 040922 415 ----------------YIFSLTSIESLDLSNNSLTGLVPD--FLAELESLTVLNLSGNNLQGSLPAGL-VEKANNRSLSL 475 (525)
Q Consensus 415 ----------------~~~~L~~L~~L~Ls~N~l~g~iP~--~l~~l~~L~~L~Ls~N~L~g~iP~~l-~~l~~l~~l~L 475 (525)
.+..+++|+.|+|++|.+.|.+|. .++.+++|++|+|++|++.+.+|..+ .++.+|+.|++
T Consensus 79 L~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L 158 (768)
T 3rgz_A 79 LESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDL 158 (768)
T ss_dssp CCEEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEEC
T ss_pred ccccCCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEEC
Confidence 445555566666666666665555 55666666666666666655555544 44455555443
No 20
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=98.99 E-value=9.9e-10 Score=106.61 Aligned_cols=90 Identities=20% Similarity=0.230 Sum_probs=80.0
Q ss_pred CCCceEEecCCCCCccCCCchhhccCCCcCEEEcCCCCCCCcCchhccCCCCCCEEeCCCCcCCCCCChhhhcCCCCcEE
Q 040922 394 QPPRIISLNLSSSGISGEIDPYIFSLTSIESLDLSNNSLTGLVPDFLAELESLTVLNLSGNNLQGSLPAGLVEKANNRSL 473 (525)
Q Consensus 394 ~~~~L~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~L~g~iP~~l~~l~~l~~l 473 (525)
.+++|+.|+|++|++++..+..+..+++|+.|+|++|++.+..+..++.+++|++|+|++|++++..|..+.++.+|+.|
T Consensus 105 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 184 (251)
T 3m19_A 105 HLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTI 184 (251)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEE
T ss_pred ccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEE
Confidence 45789999999999996666668999999999999999998888889999999999999999997777788889988876
Q ss_pred EEEecCCCCCCC
Q 040922 474 SLSVERNPNFCL 485 (525)
Q Consensus 474 ~L~l~~N~~~C~ 485 (525)
+ +.+|++.|.
T Consensus 185 ~--l~~N~~~c~ 194 (251)
T 3m19_A 185 T--LFGNQFDCS 194 (251)
T ss_dssp E--CCSCCBCTT
T ss_pred E--eeCCceeCC
Confidence 5 569999997
No 21
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.96 E-value=1.7e-09 Score=101.66 Aligned_cols=92 Identities=22% Similarity=0.241 Sum_probs=79.7
Q ss_pred CCCceEEecCCCCCccCCCchhhccCCCcCEEEcCCCCCCCcCchhccCCCCCCEEeCCCCcCCCCCChhhhcCCCCcEE
Q 040922 394 QPPRIISLNLSSSGISGEIDPYIFSLTSIESLDLSNNSLTGLVPDFLAELESLTVLNLSGNNLQGSLPAGLVEKANNRSL 473 (525)
Q Consensus 394 ~~~~L~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~L~g~iP~~l~~l~~l~~l 473 (525)
.+++|+.|+|++|++++..+..+..+++|+.|+|++|++.+..+..+..+++|+.|+|++|++++..+..+..+.+|+.|
T Consensus 74 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L 153 (208)
T 2o6s_A 74 KLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYI 153 (208)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEE
T ss_pred CCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEE
Confidence 35789999999999996666668999999999999999998888889999999999999999996666667888888876
Q ss_pred EEEecCCCCCCCCC
Q 040922 474 SLSVERNPNFCLSD 487 (525)
Q Consensus 474 ~L~l~~N~~~C~~~ 487 (525)
+ +.+|++.|.|.
T Consensus 154 ~--l~~N~~~~~~~ 165 (208)
T 2o6s_A 154 W--LHDNPWDCTCP 165 (208)
T ss_dssp E--CCSCCBCCCTT
T ss_pred E--ecCCCeecCCC
Confidence 5 55999999874
No 22
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.95 E-value=1.2e-09 Score=101.86 Aligned_cols=100 Identities=18% Similarity=0.228 Sum_probs=84.9
Q ss_pred cccccccCCCCC------CCCCceEEecCCCCCccCCCch-hhccCCCcCEEEcCCCCCCCcCchhccCCCCCCEEeCCC
Q 040922 381 HLWQGLNCSYDD------NQPPRIISLNLSSSGISGEIDP-YIFSLTSIESLDLSNNSLTGLVPDFLAELESLTVLNLSG 453 (525)
Q Consensus 381 ~~w~gv~c~~~~------~~~~~L~~L~Ls~n~l~g~ip~-~~~~L~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~ 453 (525)
+.|..+.|+..+ ..+..++.|+|++|++++..+. .+..+++|+.|+|++|++++..|..|..+++|+.|+|++
T Consensus 8 C~~~~l~~s~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 8 CEGTTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp EETTEEECTTSCCSSCCSCCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred ECCCEEEcCCCCcCcCccCCCCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 468888887643 1245899999999999966554 489999999999999999999999999999999999999
Q ss_pred CcCCCCCChhhhcCCCCcEEEEEecCCCC
Q 040922 454 NNLQGSLPAGLVEKANNRSLSLSVERNPN 482 (525)
Q Consensus 454 N~L~g~iP~~l~~l~~l~~l~L~l~~N~~ 482 (525)
|+|++..|..+..+.+|+.|+|+ +|..
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~--~N~l 114 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLY--DNQI 114 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECC--SSCC
T ss_pred CcCCccCHHHhcCCCCCCEEECC--CCcC
Confidence 99998888889999999987765 5653
No 23
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=98.95 E-value=6.8e-10 Score=116.90 Aligned_cols=91 Identities=19% Similarity=0.180 Sum_probs=82.8
Q ss_pred CCCceEEecCCCCCccCCCchhhccCCCcCEEEcCCCCCCCcCchhccCCCCCCEEeCCCCcCCCCCChhhhcCCCCcEE
Q 040922 394 QPPRIISLNLSSSGISGEIDPYIFSLTSIESLDLSNNSLTGLVPDFLAELESLTVLNLSGNNLQGSLPAGLVEKANNRSL 473 (525)
Q Consensus 394 ~~~~L~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~L~g~iP~~l~~l~~l~~l 473 (525)
.+++|+.|+|++|++++..|..|..+++|+.|+|++|++.+..|..|..+++|+.|+|++|+|++..+..+..+.+|+.|
T Consensus 205 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 284 (440)
T 3zyj_A 205 PLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERI 284 (440)
T ss_dssp TCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEE
T ss_pred CCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEE
Confidence 45789999999999998889999999999999999999999999999999999999999999997666667888888875
Q ss_pred EEEecCCCCCCCC
Q 040922 474 SLSVERNPNFCLS 486 (525)
Q Consensus 474 ~L~l~~N~~~C~~ 486 (525)
+ +.+||+.|+|
T Consensus 285 ~--L~~Np~~CdC 295 (440)
T 3zyj_A 285 H--LHHNPWNCNC 295 (440)
T ss_dssp E--CCSSCEECSS
T ss_pred E--cCCCCccCCC
Confidence 5 5699999998
No 24
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=98.95 E-value=1.6e-09 Score=106.25 Aligned_cols=92 Identities=22% Similarity=0.273 Sum_probs=80.0
Q ss_pred CCCceEEecCCCCCccCCCchhhccCCCcCEEEcCCCCCCCcCchhccCCCCCCEEeCCCCcCCCCCChhhhcCCCCcEE
Q 040922 394 QPPRIISLNLSSSGISGEIDPYIFSLTSIESLDLSNNSLTGLVPDFLAELESLTVLNLSGNNLQGSLPAGLVEKANNRSL 473 (525)
Q Consensus 394 ~~~~L~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~L~g~iP~~l~~l~~l~~l 473 (525)
.+++|+.|+|++|++++..+..+..+++|+.|+|++|++.+..+..+..+++|++|+|++|++++..+..+..+.+|+.|
T Consensus 131 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 210 (270)
T 2o6q_A 131 SLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKML 210 (270)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEE
T ss_pred cCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEE
Confidence 45789999999999996666668999999999999999998888889999999999999999996555567788888875
Q ss_pred EEEecCCCCCCCCC
Q 040922 474 SLSVERNPNFCLSD 487 (525)
Q Consensus 474 ~L~l~~N~~~C~~~ 487 (525)
+ +.+||+.|+|.
T Consensus 211 ~--l~~N~~~c~c~ 222 (270)
T 2o6q_A 211 Q--LQENPWDCTCN 222 (270)
T ss_dssp E--CCSSCBCCSSS
T ss_pred E--ecCCCeeCCCc
Confidence 5 56999999885
No 25
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=98.95 E-value=1.7e-09 Score=106.27 Aligned_cols=92 Identities=23% Similarity=0.241 Sum_probs=81.9
Q ss_pred CCCceEEecCCCCCccCCCchhhccCCCcCEEEcCCCCCCCcCchhccCCCCCCEEeCCCCcCCCCCChhhhcCCCCcEE
Q 040922 394 QPPRIISLNLSSSGISGEIDPYIFSLTSIESLDLSNNSLTGLVPDFLAELESLTVLNLSGNNLQGSLPAGLVEKANNRSL 473 (525)
Q Consensus 394 ~~~~L~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~L~g~iP~~l~~l~~l~~l 473 (525)
.+++|+.|+|++|++++..+..+..+++|+.|+|++|++++..+..++.+++|+.|+|++|++++..|..+..+.+|+.|
T Consensus 131 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 210 (272)
T 3rfs_A 131 KLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYI 210 (272)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEE
T ss_pred cCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEE
Confidence 45789999999999997777778999999999999999998888889999999999999999998777778899999886
Q ss_pred EEEecCCCCCCCCC
Q 040922 474 SLSVERNPNFCLSD 487 (525)
Q Consensus 474 ~L~l~~N~~~C~~~ 487 (525)
+ +.+|++.|.|.
T Consensus 211 ~--l~~N~~~~~~~ 222 (272)
T 3rfs_A 211 W--LHDNPWDCTCP 222 (272)
T ss_dssp E--CCSSCBCCCTT
T ss_pred E--ccCCCccccCc
Confidence 5 55999999874
No 26
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=98.93 E-value=1e-09 Score=116.01 Aligned_cols=92 Identities=22% Similarity=0.187 Sum_probs=83.2
Q ss_pred CCCceEEecCCCCCccCCCchhhccCCCcCEEEcCCCCCCCcCchhccCCCCCCEEeCCCCcCCCCCChhhhcCCCCcEE
Q 040922 394 QPPRIISLNLSSSGISGEIDPYIFSLTSIESLDLSNNSLTGLVPDFLAELESLTVLNLSGNNLQGSLPAGLVEKANNRSL 473 (525)
Q Consensus 394 ~~~~L~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~L~g~iP~~l~~l~~l~~l 473 (525)
.+++|+.|+|++|++++..|..|..+++|+.|+|++|++.+..|..|..+++|+.|+|++|+|++..+..+..+.+|+.|
T Consensus 216 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 295 (452)
T 3zyi_A 216 PLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVEL 295 (452)
T ss_dssp TCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEE
T ss_pred ccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEE
Confidence 45789999999999998889999999999999999999999999999999999999999999996666667888888875
Q ss_pred EEEecCCCCCCCCC
Q 040922 474 SLSVERNPNFCLSD 487 (525)
Q Consensus 474 ~L~l~~N~~~C~~~ 487 (525)
+ +.+||+.|+|.
T Consensus 296 ~--L~~Np~~CdC~ 307 (452)
T 3zyi_A 296 H--LHHNPWNCDCD 307 (452)
T ss_dssp E--CCSSCEECSTT
T ss_pred E--ccCCCcCCCCC
Confidence 5 56999999984
No 27
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=98.92 E-value=4e-10 Score=114.21 Aligned_cols=125 Identities=21% Similarity=0.401 Sum_probs=84.2
Q ss_pred ccchhhHHHHHHhhhhcc-c----CCCCC-CCCCCCcccccccccCCCC-----CCCCCceEEecCCCCCccCCCchhhc
Q 040922 349 LTHQQDVDAITNIKSKYE-V----KRDWQ-GDPCTPKVHLWQGLNCSYD-----DNQPPRIISLNLSSSGISGEIDPYIF 417 (525)
Q Consensus 349 ~t~~~d~~al~~l~~~~~-~----~~~w~-g~pc~p~~~~w~gv~c~~~-----~~~~~~L~~L~Ls~n~l~g~ip~~~~ 417 (525)
....+|..+|..+|..+. . ...|. +..+.+..+.|.|+.|... ....++++.|+|++|+++ .+|..+.
T Consensus 23 ~~~~~~~~aLl~~k~~~~~~~~~~~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~-~lp~~l~ 101 (328)
T 4fcg_A 23 TALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQAF 101 (328)
T ss_dssp CCCCCHHHHHHHHHHHHHHCCTTHHHHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCS-SCCSCGG
T ss_pred ccCchHHHHHHHHHHhccCCchhhhhhhcccccccccccccCCcchhhhHHHHhcccccceeEEEccCCCch-hcChhhh
Confidence 345567788888887653 1 23462 1112222347999998521 012356777777777777 6777777
Q ss_pred cCCCcCEEEcCCCCCCCcCchhccCCCCCCEEeCCCCcCCCCCChhhhcCCCCcEEEEE
Q 040922 418 SLTSIESLDLSNNSLTGLVPDFLAELESLTVLNLSGNNLQGSLPAGLVEKANNRSLSLS 476 (525)
Q Consensus 418 ~L~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~L~g~iP~~l~~l~~l~~l~L~ 476 (525)
.+++|+.|+|++|.+. .+|..++.+++|++|+|++|+++ .+|..+.++.+|+.|+++
T Consensus 102 ~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~ 158 (328)
T 4fcg_A 102 RLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIR 158 (328)
T ss_dssp GGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEE
T ss_pred hCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECC
Confidence 7777777777777777 77777777777777777777777 777777777777777665
No 28
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.90 E-value=3.6e-09 Score=99.42 Aligned_cols=95 Identities=26% Similarity=0.288 Sum_probs=56.4
Q ss_pred cccccccCCCCC------CCCCceEEecCCCCCccCCCchhhccCCCcCEEEcCCCCCCCcCchhccCCCCCCEEeCCCC
Q 040922 381 HLWQGLNCSYDD------NQPPRIISLNLSSSGISGEIDPYIFSLTSIESLDLSNNSLTGLVPDFLAELESLTVLNLSGN 454 (525)
Q Consensus 381 ~~w~gv~c~~~~------~~~~~L~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N 454 (525)
+.|.++.|...+ ..+++|+.|+|++|++++..+..+..+++|+.|+|++|++.+..+..+..+++|++|+|++|
T Consensus 7 C~~~~v~c~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 86 (208)
T 2o6s_A 7 CSGTTVECYSQGRTSVPTGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN 86 (208)
T ss_dssp EETTEEECCSSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred ECCCEEEecCCCccCCCCCCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC
Confidence 467777776543 12445666667666666444444566666666666666666555555566666666666666
Q ss_pred cCCCCCChhhhcCCCCcEEEE
Q 040922 455 NLQGSLPAGLVEKANNRSLSL 475 (525)
Q Consensus 455 ~L~g~iP~~l~~l~~l~~l~L 475 (525)
++++..+..+.++.+|+.|++
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~L 107 (208)
T 2o6s_A 87 QLQSLPNGVFDKLTQLKELAL 107 (208)
T ss_dssp CCCCCCTTTTTTCTTCCEEEC
T ss_pred cCCccCHhHhcCccCCCEEEc
Confidence 666443344455555555544
No 29
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.88 E-value=2.4e-09 Score=109.75 Aligned_cols=94 Identities=20% Similarity=0.194 Sum_probs=70.3
Q ss_pred CCCceEEecCCCCCccCCCchhhccCCCcCEEEcCCCCCCCcCchhc---cCCCCCCEEeCCCCcCCCCCChhhhcCCCC
Q 040922 394 QPPRIISLNLSSSGISGEIDPYIFSLTSIESLDLSNNSLTGLVPDFL---AELESLTVLNLSGNNLQGSLPAGLVEKANN 470 (525)
Q Consensus 394 ~~~~L~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~g~iP~~l---~~l~~L~~L~Ls~N~L~g~iP~~l~~l~~l 470 (525)
.+++|+.|+|++|+|++..|..|..+++|+.|+|++|+|++..+..+ ..+++|+.|+|++|+|++..+..+..+..+
T Consensus 110 ~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~ 189 (361)
T 2xot_A 110 DLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAW 189 (361)
T ss_dssp TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHH
T ss_pred CCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHh
Confidence 45788899999999887778888889999999999999986555555 568889999999999985444566666643
Q ss_pred cEEEEEecCCCCCCCCC
Q 040922 471 RSLSLSVERNPNFCLSD 487 (525)
Q Consensus 471 ~~l~L~l~~N~~~C~~~ 487 (525)
..-.|.+.+||+.|+|.
T Consensus 190 ~l~~l~l~~N~~~C~C~ 206 (361)
T 2xot_A 190 VKNGLYLHNNPLECDCK 206 (361)
T ss_dssp HHTTEECCSSCEECCHH
T ss_pred hcceEEecCCCccCCcC
Confidence 11235677999999984
No 30
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=98.87 E-value=2e-09 Score=106.33 Aligned_cols=92 Identities=24% Similarity=0.262 Sum_probs=81.7
Q ss_pred CCCceEEecCCCCCccCCCchhhccCCCcCEEEcCCCCCCCcCchhccCCCCCCEEeCCCCcCCCCCChhhhcCCCCcEE
Q 040922 394 QPPRIISLNLSSSGISGEIDPYIFSLTSIESLDLSNNSLTGLVPDFLAELESLTVLNLSGNNLQGSLPAGLVEKANNRSL 473 (525)
Q Consensus 394 ~~~~L~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~L~g~iP~~l~~l~~l~~l 473 (525)
.+++|+.|+|++|++++..+..+..+++|+.|+|++|.+.+..|..+..+++|+.|+|++|++++..+..+..+.+|+.|
T Consensus 151 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 230 (285)
T 1ozn_A 151 DLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYL 230 (285)
T ss_dssp TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEE
T ss_pred cCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEE
Confidence 35789999999999996666679999999999999999999999999999999999999999997666678889988875
Q ss_pred EEEecCCCCCCCCC
Q 040922 474 SLSVERNPNFCLSD 487 (525)
Q Consensus 474 ~L~l~~N~~~C~~~ 487 (525)
+ +.+|++.|+|.
T Consensus 231 ~--l~~N~~~c~~~ 242 (285)
T 1ozn_A 231 R--LNDNPWVCDCR 242 (285)
T ss_dssp E--CCSSCEECSGG
T ss_pred e--ccCCCccCCCC
Confidence 5 56999999885
No 31
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=98.85 E-value=3.9e-09 Score=110.97 Aligned_cols=92 Identities=23% Similarity=0.228 Sum_probs=82.0
Q ss_pred CCCceEEecCCCCCccCCCchhhccCCCcCEEEcCCCCCCCcCchhccCCCCCCEEeCCCCcCCCCCChhhhcCCCCcEE
Q 040922 394 QPPRIISLNLSSSGISGEIDPYIFSLTSIESLDLSNNSLTGLVPDFLAELESLTVLNLSGNNLQGSLPAGLVEKANNRSL 473 (525)
Q Consensus 394 ~~~~L~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~L~g~iP~~l~~l~~l~~l 473 (525)
.+++|+.|+|++|++++..|..+..+++|+.|+|++|++.+..|..+..+++|++|+|++|++++..+..+..+.+|+.|
T Consensus 321 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 400 (455)
T 3v47_A 321 GLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKI 400 (455)
T ss_dssp TCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEE
T ss_pred CcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEE
Confidence 35789999999999998888899999999999999999999999999999999999999999996555566888888876
Q ss_pred EEEecCCCCCCCCC
Q 040922 474 SLSVERNPNFCLSD 487 (525)
Q Consensus 474 ~L~l~~N~~~C~~~ 487 (525)
+ +.+|++.|+|.
T Consensus 401 ~--l~~N~l~~~~~ 412 (455)
T 3v47_A 401 W--LHTNPWDCSCP 412 (455)
T ss_dssp E--CCSSCBCCCTT
T ss_pred E--ccCCCcccCCC
Confidence 5 56999999985
No 32
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=98.84 E-value=3.2e-09 Score=105.79 Aligned_cols=92 Identities=24% Similarity=0.214 Sum_probs=82.8
Q ss_pred CCCceEEecCCCCCccCCCchhhccCCCcCEEEcCCCCCCCcCchhccCCCCCCEEeCCCCcCCCCCChhhhcCC-CCcE
Q 040922 394 QPPRIISLNLSSSGISGEIDPYIFSLTSIESLDLSNNSLTGLVPDFLAELESLTVLNLSGNNLQGSLPAGLVEKA-NNRS 472 (525)
Q Consensus 394 ~~~~L~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~L~g~iP~~l~~l~-~l~~ 472 (525)
.+++|+.|+|++|++++..|..+..+++|+.|+|++|++.+..+..+..+++|+.|+|++|++++..|..+..+. +|+.
T Consensus 173 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~ 252 (306)
T 2z66_A 173 ELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAF 252 (306)
T ss_dssp TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCE
T ss_pred hCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCE
Confidence 457899999999999988888999999999999999999988888899999999999999999999999988874 7776
Q ss_pred EEEEecCCCCCCCCC
Q 040922 473 LSLSVERNPNFCLSD 487 (525)
Q Consensus 473 l~L~l~~N~~~C~~~ 487 (525)
| ++.+|++.|+|.
T Consensus 253 L--~L~~N~~~~~c~ 265 (306)
T 2z66_A 253 L--NLTQNDFACTCE 265 (306)
T ss_dssp E--ECTTCCEECSGG
T ss_pred E--EccCCCeecccC
Confidence 5 456999999874
No 33
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.83 E-value=4.9e-09 Score=99.85 Aligned_cols=87 Identities=22% Similarity=0.266 Sum_probs=77.0
Q ss_pred CCCceEEecCCCCCccCCCchhhccCCCcCEEEcCCCCCCCcCchhccCCCCCCEEeCCCCcCCCCCChhhhcCCCCcEE
Q 040922 394 QPPRIISLNLSSSGISGEIDPYIFSLTSIESLDLSNNSLTGLVPDFLAELESLTVLNLSGNNLQGSLPAGLVEKANNRSL 473 (525)
Q Consensus 394 ~~~~L~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~L~g~iP~~l~~l~~l~~l 473 (525)
.+++|+.|+|++|++++..+..|..+++|+.|+|++|++++..|..|..+++|+.|+|++|++++..|..+..+.+|+.|
T Consensus 55 ~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 134 (220)
T 2v70_A 55 KLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLL 134 (220)
T ss_dssp GCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEE
T ss_pred cCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEE
Confidence 35689999999999997777789999999999999999998888889999999999999999998889999999999887
Q ss_pred EEEecCCCC
Q 040922 474 SLSVERNPN 482 (525)
Q Consensus 474 ~L~l~~N~~ 482 (525)
+|+ +|..
T Consensus 135 ~L~--~N~l 141 (220)
T 2v70_A 135 SLY--DNQI 141 (220)
T ss_dssp ECT--TSCC
T ss_pred ECC--CCcC
Confidence 654 5543
No 34
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.82 E-value=6.9e-09 Score=98.82 Aligned_cols=85 Identities=27% Similarity=0.247 Sum_probs=71.2
Q ss_pred CCceEEecCCCCCccCCCchhhccCCCcCEEEcCCCCCCCcCchhccCCCCCCEEeCCCCcCCCCCChhhhcCCCCcEEE
Q 040922 395 PPRIISLNLSSSGISGEIDPYIFSLTSIESLDLSNNSLTGLVPDFLAELESLTVLNLSGNNLQGSLPAGLVEKANNRSLS 474 (525)
Q Consensus 395 ~~~L~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~L~g~iP~~l~~l~~l~~l~ 474 (525)
+++|+.|+|++|++++..|..|..+++|+.|+|++|+|+...+..|..+++|+.|+|++|++++..|..+..+.+|+.|+
T Consensus 55 l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 134 (220)
T 2v9t_B 55 YKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLS 134 (220)
T ss_dssp CTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEE
Confidence 46788999999999877788899999999999999999966666788899999999999999988788888888888876
Q ss_pred EEecCCC
Q 040922 475 LSVERNP 481 (525)
Q Consensus 475 L~l~~N~ 481 (525)
|+ +|.
T Consensus 135 L~--~N~ 139 (220)
T 2v9t_B 135 LY--DNK 139 (220)
T ss_dssp CC--SSC
T ss_pred CC--CCc
Confidence 54 554
No 35
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=98.81 E-value=4.4e-09 Score=114.89 Aligned_cols=91 Identities=20% Similarity=0.199 Sum_probs=82.0
Q ss_pred CCCceEEecCCCCCccCCCchhhccCCCcCEEEcCCCCCCCcCchhccCCCCCCEEeCCCCcCCCCCChhhhcCC-CCcE
Q 040922 394 QPPRIISLNLSSSGISGEIDPYIFSLTSIESLDLSNNSLTGLVPDFLAELESLTVLNLSGNNLQGSLPAGLVEKA-NNRS 472 (525)
Q Consensus 394 ~~~~L~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~L~g~iP~~l~~l~-~l~~ 472 (525)
.+++|+.|+|++|++++..|..+..+++|+.|+|++|++++.+|..++.+++|+.|+|++|+++ .+|..+..+. +|+.
T Consensus 471 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~ 549 (606)
T 3vq2_A 471 NTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAF 549 (606)
T ss_dssp TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCE
T ss_pred cCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcE
Confidence 4678999999999999888889999999999999999999999999999999999999999999 7888888886 4877
Q ss_pred EEEEecCCCCCCCCC
Q 040922 473 LSLSVERNPNFCLSD 487 (525)
Q Consensus 473 l~L~l~~N~~~C~~~ 487 (525)
+ ++.+||+.|+|.
T Consensus 550 l--~l~~N~~~c~c~ 562 (606)
T 3vq2_A 550 F--NLTNNSVACICE 562 (606)
T ss_dssp E--ECCSCCCCCSST
T ss_pred E--EccCCCcccCCc
Confidence 5 456999999985
No 36
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=98.79 E-value=1.3e-08 Score=102.96 Aligned_cols=82 Identities=20% Similarity=0.194 Sum_probs=75.0
Q ss_pred CCceEEecCCCCCccCCCchhhccCCCcCEEEcCCCCCCCcCchhccCCCCCCEEeCCCCcCCCCCChhhhcCCCCcEEE
Q 040922 395 PPRIISLNLSSSGISGEIDPYIFSLTSIESLDLSNNSLTGLVPDFLAELESLTVLNLSGNNLQGSLPAGLVEKANNRSLS 474 (525)
Q Consensus 395 ~~~L~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~L~g~iP~~l~~l~~l~~l~ 474 (525)
+++|+.|+|++|++.+.+|..+..+++|+.|+|++|.+.+.+|..++.+++|+.|+|++|++.|.+|..++++.+++.+.
T Consensus 228 l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~ 307 (328)
T 4fcg_A 228 LPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIIL 307 (328)
T ss_dssp CTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEE
T ss_pred CCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEe
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999988876
Q ss_pred EE
Q 040922 475 LS 476 (525)
Q Consensus 475 L~ 476 (525)
+.
T Consensus 308 l~ 309 (328)
T 4fcg_A 308 VP 309 (328)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 37
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=98.77 E-value=4.3e-09 Score=119.98 Aligned_cols=86 Identities=24% Similarity=0.290 Sum_probs=75.0
Q ss_pred CCCceEEecCCCCCccCCCchhhccCCCcCEEEcCCCCCCCcCchhccCCCCCCEEeCCCCcCCCCCChhhhcCCCCcEE
Q 040922 394 QPPRIISLNLSSSGISGEIDPYIFSLTSIESLDLSNNSLTGLVPDFLAELESLTVLNLSGNNLQGSLPAGLVEKANNRSL 473 (525)
Q Consensus 394 ~~~~L~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~L~g~iP~~l~~l~~l~~l 473 (525)
.+++|+.|+|++|++++..|..+..+++|+.|+|++|+|++..|..+. ++|+.|+|++|+|+|.+|..+. +|+.+
T Consensus 478 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~~---~L~~l 552 (844)
T 3j0a_A 478 GLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVFV---SLSVL 552 (844)
T ss_dssp CBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCCS---SCCEE
T ss_pred CcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhHhC---CcCEE
Confidence 468999999999999988888899999999999999999987777666 8999999999999999998765 45554
Q ss_pred EEEecCCCCCCCC
Q 040922 474 SLSVERNPNFCLS 486 (525)
Q Consensus 474 ~L~l~~N~~~C~~ 486 (525)
++.+||+.|+|
T Consensus 553 --~l~~Np~~C~c 563 (844)
T 3j0a_A 553 --DITHNKFICEC 563 (844)
T ss_dssp --EEEEECCCCSS
T ss_pred --EecCCCccccc
Confidence 45699999987
No 38
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=98.76 E-value=9.2e-09 Score=99.73 Aligned_cols=82 Identities=24% Similarity=0.271 Sum_probs=56.5
Q ss_pred CCceEEecCCCCCccCCCchhhccCCCcCEEEcCCCCCCCcCchhccCCCCCCEEeCCCCcCCCCCChhhhcCCCCcEEE
Q 040922 395 PPRIISLNLSSSGISGEIDPYIFSLTSIESLDLSNNSLTGLVPDFLAELESLTVLNLSGNNLQGSLPAGLVEKANNRSLS 474 (525)
Q Consensus 395 ~~~L~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~L~g~iP~~l~~l~~l~~l~ 474 (525)
+++|+.|+|++|++++..+..+..+++|+.|+|++|++++..+..+..+++|++|+|++|++++..+..+..+.+|+.|+
T Consensus 58 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 137 (251)
T 3m19_A 58 LTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELR 137 (251)
T ss_dssp CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred cccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEE
Confidence 45677777777777766666677777777777777777766666677777777777777777754444456677777665
Q ss_pred EE
Q 040922 475 LS 476 (525)
Q Consensus 475 L~ 476 (525)
++
T Consensus 138 Ls 139 (251)
T 3m19_A 138 LN 139 (251)
T ss_dssp CC
T ss_pred Cc
Confidence 54
No 39
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=98.74 E-value=5.2e-09 Score=114.32 Aligned_cols=91 Identities=29% Similarity=0.336 Sum_probs=80.6
Q ss_pred CCCceEEecCCCCCccCCCchhhccCCCcCEEEcCCCCCCCcCchhccCCCCCCEEeCCCCcCCCCCChhhhcCCCCcEE
Q 040922 394 QPPRIISLNLSSSGISGEIDPYIFSLTSIESLDLSNNSLTGLVPDFLAELESLTVLNLSGNNLQGSLPAGLVEKANNRSL 473 (525)
Q Consensus 394 ~~~~L~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~L~g~iP~~l~~l~~l~~l 473 (525)
.+++|+.|+|++|++++..|..+..+++|+.|+|++|++++..|..+..+++| .|+|++|++++..|..+..+.+|+.+
T Consensus 474 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L 552 (606)
T 3t6q_A 474 TLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTI 552 (606)
T ss_dssp GCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEE
T ss_pred cCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEE
Confidence 35789999999999998888889999999999999999999999999999999 99999999998888888888888775
Q ss_pred EEEecCCCCCCCCC
Q 040922 474 SLSVERNPNFCLSD 487 (525)
Q Consensus 474 ~L~l~~N~~~C~~~ 487 (525)
+ +.+||+.|+|.
T Consensus 553 ~--l~~N~~~c~c~ 564 (606)
T 3t6q_A 553 N--LRQNPLDCTCS 564 (606)
T ss_dssp E--CTTCCEECSGG
T ss_pred e--CCCCCccccCC
Confidence 4 66999999885
No 40
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=98.74 E-value=1e-08 Score=110.82 Aligned_cols=92 Identities=22% Similarity=0.273 Sum_probs=83.6
Q ss_pred CCCceEEecCCCCCcc-CCCchhhccCCCcCEEEcCCCCCCCcCchhccCCCCCCEEeCCCCcCCCCCChhhhcCCCCcE
Q 040922 394 QPPRIISLNLSSSGIS-GEIDPYIFSLTSIESLDLSNNSLTGLVPDFLAELESLTVLNLSGNNLQGSLPAGLVEKANNRS 472 (525)
Q Consensus 394 ~~~~L~~L~Ls~n~l~-g~ip~~~~~L~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~L~g~iP~~l~~l~~l~~ 472 (525)
.+++|+.|+|++|.++ +.+|..+..+++|+.|+|++|++++..|..+..+++|+.|+|++|++++..|..+.++.+|+.
T Consensus 443 ~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 522 (570)
T 2z63_A 443 GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQK 522 (570)
T ss_dssp TCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCE
T ss_pred cCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcE
Confidence 4678999999999998 678999999999999999999999999999999999999999999999887888889999887
Q ss_pred EEEEecCCCCCCCCC
Q 040922 473 LSLSVERNPNFCLSD 487 (525)
Q Consensus 473 l~L~l~~N~~~C~~~ 487 (525)
++ +.+|++.|+|.
T Consensus 523 L~--l~~N~~~~~~~ 535 (570)
T 2z63_A 523 IW--LHTNPWDCSCP 535 (570)
T ss_dssp EE--CCSSCBCCCTT
T ss_pred EE--ecCCcccCCCc
Confidence 65 56999999885
No 41
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=98.74 E-value=1e-08 Score=111.90 Aligned_cols=92 Identities=22% Similarity=0.231 Sum_probs=65.4
Q ss_pred cccCCCCC------CCCCceEEecCCCCCccCCCchhhccCCCcCEEEcCCCCCCCcCchhccCCCCCCEEeCCCCcCCC
Q 040922 385 GLNCSYDD------NQPPRIISLNLSSSGISGEIDPYIFSLTSIESLDLSNNSLTGLVPDFLAELESLTVLNLSGNNLQG 458 (525)
Q Consensus 385 gv~c~~~~------~~~~~L~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~L~g 458 (525)
.+.|...+ +.|+.++.|+|++|+|++..+..|.++++|+.|+|++|+|++..|..|.+|++|++|+|++|+|++
T Consensus 35 ~~~c~~~~l~~vP~~lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~ 114 (635)
T 4g8a_A 35 TYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS 114 (635)
T ss_dssp EEECTTSCCSSCCSSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCE
T ss_pred EEECCCCCcCccCCCCCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCC
Confidence 35676543 234577888888888886556678888888888888888887777777888888888888888775
Q ss_pred CCChhhhcCCCCcEEEEE
Q 040922 459 SLPAGLVEKANNRSLSLS 476 (525)
Q Consensus 459 ~iP~~l~~l~~l~~l~L~ 476 (525)
..|..+.++.+|+.|+++
T Consensus 115 l~~~~f~~L~~L~~L~Ls 132 (635)
T 4g8a_A 115 LALGAFSGLSSLQKLVAV 132 (635)
T ss_dssp ECGGGGTTCTTCCEEECT
T ss_pred CCHHHhcCCCCCCEEECC
Confidence 444556677777766543
No 42
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=98.74 E-value=7.2e-09 Score=109.92 Aligned_cols=91 Identities=26% Similarity=0.277 Sum_probs=80.5
Q ss_pred CCceEEecCCCCCccCCCchhhccCCCcCEEEcCCCCCCCcCchhccCCCCCCEEeCCCCcCCCCCChhhhcCCCCcEEE
Q 040922 395 PPRIISLNLSSSGISGEIDPYIFSLTSIESLDLSNNSLTGLVPDFLAELESLTVLNLSGNNLQGSLPAGLVEKANNRSLS 474 (525)
Q Consensus 395 ~~~L~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~L~g~iP~~l~~l~~l~~l~ 474 (525)
+++|+.|+|++|.+++..+..+..+++|+.|+|++|++.+..|..+..+++|+.|+|++|++++..+..+..+.+|+.|+
T Consensus 247 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 326 (477)
T 2id5_A 247 LVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLI 326 (477)
T ss_dssp CTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEE
T ss_pred ccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEE
Confidence 46899999999999977777899999999999999999999999999999999999999999966566677788888755
Q ss_pred EEecCCCCCCCCC
Q 040922 475 LSVERNPNFCLSD 487 (525)
Q Consensus 475 L~l~~N~~~C~~~ 487 (525)
+.+|++.|+|.
T Consensus 327 --l~~N~l~c~c~ 337 (477)
T 2id5_A 327 --LDSNPLACDCR 337 (477)
T ss_dssp --CCSSCEECSGG
T ss_pred --ccCCCccCccc
Confidence 56999999883
No 43
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=98.72 E-value=5.2e-09 Score=105.10 Aligned_cols=79 Identities=29% Similarity=0.552 Sum_probs=40.4
Q ss_pred CceEEecCCC-CCccCCCchhhccCCCcCEEEcCCCCCCCcCchhccCCCCCCEEeCCCCcCCCCCChhhhcCCCCcEEE
Q 040922 396 PRIISLNLSS-SGISGEIDPYIFSLTSIESLDLSNNSLTGLVPDFLAELESLTVLNLSGNNLQGSLPAGLVEKANNRSLS 474 (525)
Q Consensus 396 ~~L~~L~Ls~-n~l~g~ip~~~~~L~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~L~g~iP~~l~~l~~l~~l~ 474 (525)
++|+.|+|++ |.+.+.+|..+.++++|+.|+|++|++.+.+|..+..+++|++|+|++|++++.+|..+.++.+|+.|+
T Consensus 76 ~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 155 (313)
T 1ogq_A 76 PYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGIT 155 (313)
T ss_dssp TTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEE
T ss_pred CCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEE
Confidence 4455555552 555555555555555555555555555555555555555555555555555555555555555544443
No 44
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.72 E-value=2.6e-08 Score=91.07 Aligned_cols=99 Identities=23% Similarity=0.278 Sum_probs=83.8
Q ss_pred cccccccCCCCC------CCCCceEEecCCCCCccCCCchhhccCCCcCEEEcCCCCCCCcCchhccCCCCCCEEeCCCC
Q 040922 381 HLWQGLNCSYDD------NQPPRIISLNLSSSGISGEIDPYIFSLTSIESLDLSNNSLTGLVPDFLAELESLTVLNLSGN 454 (525)
Q Consensus 381 ~~w~gv~c~~~~------~~~~~L~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N 454 (525)
+.|.++.|...+ ..+++|+.|+|++|++++..+..+..+++|+.|+|++|++++..+..+..+++|+.|+|++|
T Consensus 7 C~~~~l~~~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 86 (177)
T 2o6r_A 7 CSGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN 86 (177)
T ss_dssp EETTEEECCSSCCSSCCTTCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred eCCCEEEecCCCCccCCCCCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence 478889987643 23578999999999999766667899999999999999999877788899999999999999
Q ss_pred cCCCCCChhhhcCCCCcEEEEEecCCC
Q 040922 455 NLQGSLPAGLVEKANNRSLSLSVERNP 481 (525)
Q Consensus 455 ~L~g~iP~~l~~l~~l~~l~L~l~~N~ 481 (525)
++++..+..+..+.+|+.|+++ +|.
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~l~--~N~ 111 (177)
T 2o6r_A 87 KLQSLPNGVFDKLTQLKELALD--TNQ 111 (177)
T ss_dssp CCCCCCTTTTTTCTTCCEEECC--SSC
T ss_pred CccccCHHHhhCCcccCEEECc--CCc
Confidence 9997666667889999887765 554
No 45
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=98.71 E-value=1.5e-08 Score=112.16 Aligned_cols=91 Identities=26% Similarity=0.269 Sum_probs=77.6
Q ss_pred CCCceEEecCCCCCccCCCch-hhccCCCcCEEEcCCCCCCCcCchhccCCCCCCEEeCCCCcCCCCCChhhh-cCCCCc
Q 040922 394 QPPRIISLNLSSSGISGEIDP-YIFSLTSIESLDLSNNSLTGLVPDFLAELESLTVLNLSGNNLQGSLPAGLV-EKANNR 471 (525)
Q Consensus 394 ~~~~L~~L~Ls~n~l~g~ip~-~~~~L~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~L~g~iP~~l~-~l~~l~ 471 (525)
.+++|+.|+|++|+++ .+|. .|..+++|+.|+|++|++++..+..|..+++|+.|+|++|++++..|..+. .+.+|+
T Consensus 534 ~l~~L~~L~L~~N~l~-~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~ 612 (680)
T 1ziw_A 534 GLSHLHILNLESNGFD-EIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLT 612 (680)
T ss_dssp TCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCS
T ss_pred CCCCCCEEECCCCCCC-CCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccC
Confidence 4578999999999999 5554 589999999999999999977777889999999999999999977777666 677887
Q ss_pred EEEEEecCCCCCCCCC
Q 040922 472 SLSLSVERNPNFCLSD 487 (525)
Q Consensus 472 ~l~L~l~~N~~~C~~~ 487 (525)
.+ ++.+|||.|+|.
T Consensus 613 ~l--~l~~N~~~c~c~ 626 (680)
T 1ziw_A 613 EL--DMRFNPFDCTCE 626 (680)
T ss_dssp EE--ECTTCCCCBCCC
T ss_pred EE--EccCCCcccCCc
Confidence 75 466999999986
No 46
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=98.71 E-value=1.3e-08 Score=106.98 Aligned_cols=81 Identities=20% Similarity=0.222 Sum_probs=50.9
Q ss_pred CCceEEecCCCCCccCCCchhhccCCCcCEEEcCCCCCCCcC-chhccCCCCCCEEeCCCCcCCCCCChhhhcCCCCcEE
Q 040922 395 PPRIISLNLSSSGISGEIDPYIFSLTSIESLDLSNNSLTGLV-PDFLAELESLTVLNLSGNNLQGSLPAGLVEKANNRSL 473 (525)
Q Consensus 395 ~~~L~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~g~i-P~~l~~l~~L~~L~Ls~N~L~g~iP~~l~~l~~l~~l 473 (525)
+++|+.|+|++|.+++..|..+..+++|+.|+|++|.+.+.+ |..|..+++|++|+|++|++++..|..+.++.+|+.|
T Consensus 29 ~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 108 (455)
T 3v47_A 29 PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVL 108 (455)
T ss_dssp CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEE
T ss_pred CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEE
Confidence 356677777777776655666666666666666666665444 3456666666666666666665556666666666554
Q ss_pred EE
Q 040922 474 SL 475 (525)
Q Consensus 474 ~L 475 (525)
++
T Consensus 109 ~L 110 (455)
T 3v47_A 109 TL 110 (455)
T ss_dssp EC
T ss_pred eC
Confidence 44
No 47
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.71 E-value=1.6e-08 Score=89.70 Aligned_cols=84 Identities=25% Similarity=0.286 Sum_probs=69.8
Q ss_pred CCCceEEecCCCCCccCCCchhhccCCCcCEEEcCCCCCCCcCchhccCCCCCCEEeCCCCcCCCC-CChhhhcCCCCcE
Q 040922 394 QPPRIISLNLSSSGISGEIDPYIFSLTSIESLDLSNNSLTGLVPDFLAELESLTVLNLSGNNLQGS-LPAGLVEKANNRS 472 (525)
Q Consensus 394 ~~~~L~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~L~g~-iP~~l~~l~~l~~ 472 (525)
.+++|+.|+|++|.+++. ..+..+++|+.|+|++|++.+.+|..+..+++|++|+|++|++++. .|..+..+.+|+.
T Consensus 40 ~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~ 117 (149)
T 2je0_A 40 EFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKS 117 (149)
T ss_dssp TCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCE
T ss_pred hcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCE
Confidence 457899999999999865 7788899999999999999988888888899999999999999863 4477888888887
Q ss_pred EEEEecCCC
Q 040922 473 LSLSVERNP 481 (525)
Q Consensus 473 l~L~l~~N~ 481 (525)
|++ .+|+
T Consensus 118 L~l--~~N~ 124 (149)
T 2je0_A 118 LDL--FNCE 124 (149)
T ss_dssp EEC--TTCG
T ss_pred EeC--cCCc
Confidence 665 4554
No 48
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.71 E-value=2.5e-08 Score=95.45 Aligned_cols=93 Identities=24% Similarity=0.209 Sum_probs=54.5
Q ss_pred ccccccCCCCC------CCCCceEEecCCCCCccCCCchhhccCCCcCEEEcCCCCCCCcCchhccCCCCCCEEeCCCCc
Q 040922 382 LWQGLNCSYDD------NQPPRIISLNLSSSGISGEIDPYIFSLTSIESLDLSNNSLTGLVPDFLAELESLTVLNLSGNN 455 (525)
Q Consensus 382 ~w~gv~c~~~~------~~~~~L~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~ 455 (525)
.|.++.|+... +.+++|+.|+|++|++++..|..|..+++|+.|+|++|+|.+..+..|..+++|+.|+|++|+
T Consensus 20 s~~~v~c~~~~l~~ip~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~ 99 (229)
T 3e6j_A 20 SGTTVDCRSKRHASVPAGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQ 99 (229)
T ss_dssp ETTEEECTTSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred eCCEeEccCCCcCccCCCCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCc
Confidence 78888887643 134566666666666666556666666666666666666654444455556666666666666
Q ss_pred CCCCCChhhhcCCCCcEEE
Q 040922 456 LQGSLPAGLVEKANNRSLS 474 (525)
Q Consensus 456 L~g~iP~~l~~l~~l~~l~ 474 (525)
|++..+..+..+.+|+.|+
T Consensus 100 l~~l~~~~~~~l~~L~~L~ 118 (229)
T 3e6j_A 100 LTVLPSAVFDRLVHLKELF 118 (229)
T ss_dssp CCCCCTTTTTTCTTCCEEE
T ss_pred CCccChhHhCcchhhCeEe
Confidence 5543333344444444443
No 49
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.68 E-value=1.6e-08 Score=89.71 Aligned_cols=82 Identities=21% Similarity=0.217 Sum_probs=64.1
Q ss_pred CCCceEEecCCCCCccCCCchhhccCCCcCEEEcCCCCCCCc-CchhccCCCCCCEEeCCCCcCCCCCC---hhhhcCCC
Q 040922 394 QPPRIISLNLSSSGISGEIDPYIFSLTSIESLDLSNNSLTGL-VPDFLAELESLTVLNLSGNNLQGSLP---AGLVEKAN 469 (525)
Q Consensus 394 ~~~~L~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~g~-iP~~l~~l~~L~~L~Ls~N~L~g~iP---~~l~~l~~ 469 (525)
.+++|+.|+|++|++++.+|..+..+++|+.|++++|++++. .+..++.+++|+.|++++|++++..+ ..+..+++
T Consensus 62 ~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~ 141 (149)
T 2je0_A 62 KLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQ 141 (149)
T ss_dssp CCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTT
T ss_pred cCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCC
Confidence 457888888888888877787777888888888888888863 45778888888888888888886554 46777887
Q ss_pred CcEEEE
Q 040922 470 NRSLSL 475 (525)
Q Consensus 470 l~~l~L 475 (525)
|+.|++
T Consensus 142 L~~L~l 147 (149)
T 2je0_A 142 LTYLDG 147 (149)
T ss_dssp CCEETT
T ss_pred cccccC
Confidence 777654
No 50
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=98.65 E-value=2e-08 Score=108.14 Aligned_cols=78 Identities=22% Similarity=0.169 Sum_probs=38.9
Q ss_pred ceEEecCCCCCccCCCchhhccCCCcCEEEcCCCCCCCcCchhccCCCCCCEEeCCCCcCCCCCChhhhcCCCCcEEE
Q 040922 397 RIISLNLSSSGISGEIDPYIFSLTSIESLDLSNNSLTGLVPDFLAELESLTVLNLSGNNLQGSLPAGLVEKANNRSLS 474 (525)
Q Consensus 397 ~L~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~L~g~iP~~l~~l~~l~~l~ 474 (525)
+|+.|+|++|++++..|..|..+++|+.|+|++|++.+..|..|+.+++|++|+|++|++++..|..+.++.+|+.|+
T Consensus 27 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 104 (549)
T 2z81_A 27 AMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLN 104 (549)
T ss_dssp TCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEE
T ss_pred CccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEE
Confidence 455555555555544444455555555555555555544444555555555555555555544333344444444433
No 51
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=98.64 E-value=5e-08 Score=95.59 Aligned_cols=80 Identities=26% Similarity=0.262 Sum_probs=43.6
Q ss_pred CceEEecCCCCCccCCCchhhccCCCcCEEEcCCCCCCCcCchhccCCCCCCEEeCCCCcCCCCCChhhhcCCCCcEEEE
Q 040922 396 PRIISLNLSSSGISGEIDPYIFSLTSIESLDLSNNSLTGLVPDFLAELESLTVLNLSGNNLQGSLPAGLVEKANNRSLSL 475 (525)
Q Consensus 396 ~~L~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~L~g~iP~~l~~l~~l~~l~L 475 (525)
+.++.|+|++|++++..+..|..+++|+.|+|++|+++...+..|..+++|++|+|++|++++..+..+..+.+|+.|++
T Consensus 37 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 116 (270)
T 2o6q_A 37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRL 116 (270)
T ss_dssp TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEEC
T ss_pred CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEEC
Confidence 45666666666666444445666666666666666665444444455555555555555555333333444444444433
No 52
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.64 E-value=3.7e-08 Score=107.22 Aligned_cols=84 Identities=31% Similarity=0.309 Sum_probs=76.0
Q ss_pred CCCceEEecCCCCCccCCCchhhccCCCcCEEEcCCCCCCCcCchhccCCCCCCEEeCCCCcCCCCC-ChhhhcCCCCcE
Q 040922 394 QPPRIISLNLSSSGISGEIDPYIFSLTSIESLDLSNNSLTGLVPDFLAELESLTVLNLSGNNLQGSL-PAGLVEKANNRS 472 (525)
Q Consensus 394 ~~~~L~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~L~g~i-P~~l~~l~~l~~ 472 (525)
.+++|+.|+|++|+|+ .+|..++.|++|+.|+|++|+|++ +| .++.+++|+.|+|++|+|++.+ |..+..+.+|+.
T Consensus 461 ~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~ 537 (567)
T 1dce_A 461 QLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVL 537 (567)
T ss_dssp GGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCE
T ss_pred ccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCE
Confidence 4578999999999999 889999999999999999999996 77 8999999999999999999877 999999999988
Q ss_pred EEEEecCCCC
Q 040922 473 LSLSVERNPN 482 (525)
Q Consensus 473 l~L~l~~N~~ 482 (525)
|+| .+|+.
T Consensus 538 L~L--~~N~l 545 (567)
T 1dce_A 538 LNL--QGNSL 545 (567)
T ss_dssp EEC--TTSGG
T ss_pred EEe--cCCcC
Confidence 665 47764
No 53
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.64 E-value=2.7e-08 Score=90.05 Aligned_cols=83 Identities=28% Similarity=0.281 Sum_probs=65.4
Q ss_pred CCceEEecCCCCCccCCCchhhccCCCcCEEEcCCCCCCCcCchhccCCCCCCEEeCCCCcCCCC-CChhhhcCCCCcEE
Q 040922 395 PPRIISLNLSSSGISGEIDPYIFSLTSIESLDLSNNSLTGLVPDFLAELESLTVLNLSGNNLQGS-LPAGLVEKANNRSL 473 (525)
Q Consensus 395 ~~~L~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~L~g~-iP~~l~~l~~l~~l 473 (525)
+++|+.|+|++|.+++. ..+..+++|+.|+|++|++.+.+|..+..+++|+.|+|++|++++. .+..+..+.+|+.|
T Consensus 48 l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L 125 (168)
T 2ell_A 48 FVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSL 125 (168)
T ss_dssp GGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEE
T ss_pred CCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEE
Confidence 46788888888888855 6788888888888888888877888888888888899988888853 22677788888876
Q ss_pred EEEecCCC
Q 040922 474 SLSVERNP 481 (525)
Q Consensus 474 ~L~l~~N~ 481 (525)
+++ +|+
T Consensus 126 ~l~--~N~ 131 (168)
T 2ell_A 126 DLF--NCE 131 (168)
T ss_dssp ECC--SSG
T ss_pred Eee--CCc
Confidence 654 554
No 54
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=98.61 E-value=5.2e-08 Score=102.78 Aligned_cols=94 Identities=23% Similarity=0.216 Sum_probs=73.6
Q ss_pred cccccCCCCC------CCCCceEEecCCCCCccCCCchhhccCCCcCEEEcCCCCCCCcCchhccCCCCCCEEeCCCCcC
Q 040922 383 WQGLNCSYDD------NQPPRIISLNLSSSGISGEIDPYIFSLTSIESLDLSNNSLTGLVPDFLAELESLTVLNLSGNNL 456 (525)
Q Consensus 383 w~gv~c~~~~------~~~~~L~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~L 456 (525)
|..+.|...+ +.+++++.|+|++|++++..+..|..+++|+.|+|++|++.+..|..|..+++|++|+|++|++
T Consensus 56 ~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l 135 (452)
T 3zyi_A 56 FSKVVCTRRGLSEVPQGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWL 135 (452)
T ss_dssp SCEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred CcEEEECCCCcCccCCCCCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcC
Confidence 4567776543 2356788899999988877788888888888888888888888888888888888888888888
Q ss_pred CCCCChhhhcCCCCcEEEEE
Q 040922 457 QGSLPAGLVEKANNRSLSLS 476 (525)
Q Consensus 457 ~g~iP~~l~~l~~l~~l~L~ 476 (525)
++..+..+..+.+|+.|+|+
T Consensus 136 ~~~~~~~~~~l~~L~~L~L~ 155 (452)
T 3zyi_A 136 TVIPSGAFEYLSKLRELWLR 155 (452)
T ss_dssp SBCCTTTSSSCTTCCEEECC
T ss_pred CccChhhhcccCCCCEEECC
Confidence 85555557778888776654
No 55
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=98.60 E-value=8.9e-08 Score=93.94 Aligned_cols=86 Identities=26% Similarity=0.266 Sum_probs=75.2
Q ss_pred CCCceEEecCCCCCccCCCchhhccCCCcCEEEcCCCCCCCcCchhccCCCCCCEEeCCCCcCCCCCChhhhcCCCCcEE
Q 040922 394 QPPRIISLNLSSSGISGEIDPYIFSLTSIESLDLSNNSLTGLVPDFLAELESLTVLNLSGNNLQGSLPAGLVEKANNRSL 473 (525)
Q Consensus 394 ~~~~L~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~L~g~iP~~l~~l~~l~~l 473 (525)
.+++|+.|+|++|++++..+..+..+++|+.|+|++|++++..+..++.+++|+.|+|++|++++..|..+..+.+|+.|
T Consensus 107 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 186 (272)
T 3rfs_A 107 KLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDL 186 (272)
T ss_dssp TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEE
Confidence 45789999999999997777778999999999999999998888888999999999999999997777777889999887
Q ss_pred EEEecCCC
Q 040922 474 SLSVERNP 481 (525)
Q Consensus 474 ~L~l~~N~ 481 (525)
+++ +|.
T Consensus 187 ~L~--~N~ 192 (272)
T 3rfs_A 187 RLY--QNQ 192 (272)
T ss_dssp ECC--SSC
T ss_pred ECC--CCc
Confidence 664 554
No 56
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.58 E-value=5.2e-08 Score=99.78 Aligned_cols=86 Identities=26% Similarity=0.266 Sum_probs=65.3
Q ss_pred CCCceEEecCCCCCccCCCchhhccCCCcCEEEcCCCCCCCcCchhccCCCCCCEEeCCCCcCCCCCChhh----hcCCC
Q 040922 394 QPPRIISLNLSSSGISGEIDPYIFSLTSIESLDLSNNSLTGLVPDFLAELESLTVLNLSGNNLQGSLPAGL----VEKAN 469 (525)
Q Consensus 394 ~~~~L~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~L~g~iP~~l----~~l~~ 469 (525)
.+++|+.|+|++|+|++..+..|..+++|+.|+|++|++.+..|..|..+++|+.|+|++|+|+ .+|..+ ..+.+
T Consensus 86 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~~~~l~~ 164 (361)
T 2xot_A 86 PVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS-RFPVELIKDGNKLPK 164 (361)
T ss_dssp TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC-SCCGGGTC----CTT
T ss_pred CCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCC-eeCHHHhcCcccCCc
Confidence 4568888888888888666667888888888888888888888888888888888888888888 466554 45777
Q ss_pred CcEEEEEecCCCC
Q 040922 470 NRSLSLSVERNPN 482 (525)
Q Consensus 470 l~~l~L~l~~N~~ 482 (525)
|+.|+|+ +|..
T Consensus 165 L~~L~L~--~N~l 175 (361)
T 2xot_A 165 LMLLDLS--SNKL 175 (361)
T ss_dssp CCEEECC--SSCC
T ss_pred CCEEECC--CCCC
Confidence 7776554 5543
No 57
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.58 E-value=4.1e-08 Score=110.12 Aligned_cols=82 Identities=28% Similarity=0.341 Sum_probs=50.9
Q ss_pred CceEEecCCCCCccCCCchhhccCCCcCEEEcCCCCCCCcCchhccCCCCCCEEeCCCCcCCCCCChhhhcCCCCcEEEE
Q 040922 396 PRIISLNLSSSGISGEIDPYIFSLTSIESLDLSNNSLTGLVPDFLAELESLTVLNLSGNNLQGSLPAGLVEKANNRSLSL 475 (525)
Q Consensus 396 ~~L~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~L~g~iP~~l~~l~~l~~l~L 475 (525)
++|+.|+|++|.|+ .+|..|..|++|+.|+|++|+|+ .+|..++.|++|++|+|++|.|+ .+|..++++.+|+.|+|
T Consensus 247 ~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L 323 (727)
T 4b8c_D 247 DFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGV 323 (727)
T ss_dssp CSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEEC
T ss_pred CCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeC
Confidence 45666666666666 56666666666666666666666 55666666666666666666665 56666666666655443
Q ss_pred EecCCCC
Q 040922 476 SVERNPN 482 (525)
Q Consensus 476 ~l~~N~~ 482 (525)
.+|+.
T Consensus 324 --~~N~l 328 (727)
T 4b8c_D 324 --EGNPL 328 (727)
T ss_dssp --TTSCC
T ss_pred --CCCcc
Confidence 34543
No 58
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=98.57 E-value=6e-08 Score=105.15 Aligned_cols=88 Identities=28% Similarity=0.434 Sum_probs=75.9
Q ss_pred CCCceEEecCCCCCccCCCchhhccCCCcCEEEcCCCCCCCcCchhccCCCCCCEEeCCCCcCCCCCChh-hhcCCCCcE
Q 040922 394 QPPRIISLNLSSSGISGEIDPYIFSLTSIESLDLSNNSLTGLVPDFLAELESLTVLNLSGNNLQGSLPAG-LVEKANNRS 472 (525)
Q Consensus 394 ~~~~L~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~L~g~iP~~-l~~l~~l~~ 472 (525)
.+++|+.|+|++|++++.+|..+. ++|+.|+|++|+++ .+|..+..+++|+.|+|++|+++ .+|.. +..+.+|+.
T Consensus 426 ~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~ 501 (562)
T 3a79_B 426 WAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQY 501 (562)
T ss_dssp CCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTTCCC
T ss_pred CcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCCCCE
Confidence 357899999999999887776655 78999999999999 78888889999999999999999 68877 888888887
Q ss_pred EEEEecCCCCCCCCC
Q 040922 473 LSLSVERNPNFCLSD 487 (525)
Q Consensus 473 l~L~l~~N~~~C~~~ 487 (525)
++ +.+||+.|+|.
T Consensus 502 L~--l~~N~~~c~c~ 514 (562)
T 3a79_B 502 IW--LHDNPWDCTCP 514 (562)
T ss_dssp EE--CCSCCBCCCHH
T ss_pred EE--ecCCCcCCCcc
Confidence 55 56999999874
No 59
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=98.56 E-value=6.4e-08 Score=94.88 Aligned_cols=80 Identities=24% Similarity=0.222 Sum_probs=42.2
Q ss_pred CceEEecCCCCCccCCCchhhccCCCcCEEEcCCCCCCCcCchhccCCCCCCEEeCCCCcCCCCCChhhhcCCCCcEEEE
Q 040922 396 PRIISLNLSSSGISGEIDPYIFSLTSIESLDLSNNSLTGLVPDFLAELESLTVLNLSGNNLQGSLPAGLVEKANNRSLSL 475 (525)
Q Consensus 396 ~~L~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~L~g~iP~~l~~l~~l~~l~L 475 (525)
++|+.|+|++|++++..+..+..+++|+.|+|++|++.+..|..+..+++|+.|++++|++++..+..+.++.+|+.|++
T Consensus 52 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 131 (276)
T 2z62_A 52 PELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNV 131 (276)
T ss_dssp TTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEEC
T ss_pred cCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEEC
Confidence 45555555555555444444555555555555555555555555555555555555555555443334555555555443
No 60
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=98.56 E-value=1.3e-07 Score=93.87 Aligned_cols=87 Identities=25% Similarity=0.245 Sum_probs=73.6
Q ss_pred CCCceEEecCCCCCccCCCchhhccCCCcCEEEcCCCCCCCcCchhccCCCCCCEEeCCCCcCCCCCChhhhcCCCCcEE
Q 040922 394 QPPRIISLNLSSSGISGEIDPYIFSLTSIESLDLSNNSLTGLVPDFLAELESLTVLNLSGNNLQGSLPAGLVEKANNRSL 473 (525)
Q Consensus 394 ~~~~L~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~L~g~iP~~l~~l~~l~~l 473 (525)
.+++|+.|+|++|++++..+..|..+++|+.|+|++|++.+..+..|..+++|+.|+|++|+|++..+..+.++.+|+.|
T Consensus 98 ~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L 177 (290)
T 1p9a_G 98 TLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTL 177 (290)
T ss_dssp TCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEE
T ss_pred cCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEE
Confidence 45789999999999997777889999999999999999998888888999999999999999994444445778889887
Q ss_pred EEEecCCCC
Q 040922 474 SLSVERNPN 482 (525)
Q Consensus 474 ~L~l~~N~~ 482 (525)
+++ +|..
T Consensus 178 ~L~--~N~l 184 (290)
T 1p9a_G 178 LLQ--ENSL 184 (290)
T ss_dssp ECC--SSCC
T ss_pred ECC--CCcC
Confidence 654 6654
No 61
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.56 E-value=5.2e-08 Score=89.12 Aligned_cols=74 Identities=22% Similarity=0.193 Sum_probs=36.9
Q ss_pred ceEEecCCCCCccCCCchhhccCCCcCEEEcCCCCCCCcCchhccCCCCCCEEeCCCCcCCCCCCh--hhhcCCCCcEE
Q 040922 397 RIISLNLSSSGISGEIDPYIFSLTSIESLDLSNNSLTGLVPDFLAELESLTVLNLSGNNLQGSLPA--GLVEKANNRSL 473 (525)
Q Consensus 397 ~L~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~L~g~iP~--~l~~l~~l~~l 473 (525)
+|+.|+|++|++++. ..+..+++|+.|+|++|++++..|..+..+++|+.|+|++|+++ .+|. .+..+.+|+.|
T Consensus 43 ~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L 118 (176)
T 1a9n_A 43 QFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYL 118 (176)
T ss_dssp CCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEE
T ss_pred CCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEE
Confidence 455555555555532 34555555555555555555433333355555555555555553 3443 44445555443
No 62
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=98.55 E-value=8.6e-08 Score=102.64 Aligned_cols=88 Identities=28% Similarity=0.425 Sum_probs=77.0
Q ss_pred CCCceEEecCCCCCccCCCchhhccCCCcCEEEcCCCCCCCcCchhccCCCCCCEEeCCCCcCCCCCChh-hhcCCCCcE
Q 040922 394 QPPRIISLNLSSSGISGEIDPYIFSLTSIESLDLSNNSLTGLVPDFLAELESLTVLNLSGNNLQGSLPAG-LVEKANNRS 472 (525)
Q Consensus 394 ~~~~L~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~L~g~iP~~-l~~l~~l~~ 472 (525)
.+++|+.|+|++|++++.+|..+. ++|+.|+|++|+++ .+|..+..+++|+.|+|++|+++ .+|.. +..+.+|+.
T Consensus 397 ~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~ 472 (520)
T 2z7x_B 397 WTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQK 472 (520)
T ss_dssp CCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTCCE
T ss_pred cCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCC-ccCHHHhccCCcccE
Confidence 357899999999999988887665 79999999999999 88988889999999999999999 68876 788888887
Q ss_pred EEEEecCCCCCCCCC
Q 040922 473 LSLSVERNPNFCLSD 487 (525)
Q Consensus 473 l~L~l~~N~~~C~~~ 487 (525)
++ +.+|++.|+|.
T Consensus 473 L~--l~~N~~~c~c~ 485 (520)
T 2z7x_B 473 IW--LHTNPWDCSCP 485 (520)
T ss_dssp EE--CCSSCBCCCHH
T ss_pred EE--CcCCCCcccCC
Confidence 65 56999999884
No 63
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=98.54 E-value=8.1e-08 Score=104.78 Aligned_cols=79 Identities=19% Similarity=0.190 Sum_probs=38.0
Q ss_pred CceEEecCCCCCccCCCchhhccCCCcCEEEcCCCCCCCcCchhccCCCCCCEEeCCCCcCCCCCChhhhcCCCCcEEE
Q 040922 396 PRIISLNLSSSGISGEIDPYIFSLTSIESLDLSNNSLTGLVPDFLAELESLTVLNLSGNNLQGSLPAGLVEKANNRSLS 474 (525)
Q Consensus 396 ~~L~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~L~g~iP~~l~~l~~l~~l~ 474 (525)
++++.|+|++|++++..+..|.++++|+.|+|++|++++..|..|+.+++|++|+|++|++++..|..+.++.+|+.|+
T Consensus 32 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 110 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLV 110 (606)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEE
T ss_pred CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEE
Confidence 3445555555555444444444555555555555555444444444445555555555544444444444444444433
No 64
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=98.54 E-value=6.1e-08 Score=105.76 Aligned_cols=81 Identities=19% Similarity=0.141 Sum_probs=55.6
Q ss_pred CCceEEecCCCCCccCCCchhhccCCCcCEEEcCCCCCCCcCchhccCCCCCCEEeCCCCcCCCCCChhhhcCCCCcEEE
Q 040922 395 PPRIISLNLSSSGISGEIDPYIFSLTSIESLDLSNNSLTGLVPDFLAELESLTVLNLSGNNLQGSLPAGLVEKANNRSLS 474 (525)
Q Consensus 395 ~~~L~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~L~g~iP~~l~~l~~l~~l~ 474 (525)
+..++.|+|++|.+++..|..|..+++|+.|+|++|++.+..|..|+.+++|++|+|++|++++..|..+.++.+|+.|+
T Consensus 32 ~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 111 (606)
T 3t6q_A 32 PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLF 111 (606)
T ss_dssp CTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEE
T ss_pred CCcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEee
Confidence 45667777777777766666677777777777777777766677777777777777777777666666666666666655
Q ss_pred E
Q 040922 475 L 475 (525)
Q Consensus 475 L 475 (525)
+
T Consensus 112 L 112 (606)
T 3t6q_A 112 F 112 (606)
T ss_dssp C
T ss_pred c
Confidence 4
No 65
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.54 E-value=1.3e-07 Score=86.54 Aligned_cols=79 Identities=23% Similarity=0.220 Sum_probs=67.6
Q ss_pred EEecCCCCCccCCCchhhccCCCcCEEEcCCCCCCCcCchhccCCCCCCEEeCCCCcCCCCCChhhhcCCCCcEEEEEec
Q 040922 399 ISLNLSSSGISGEIDPYIFSLTSIESLDLSNNSLTGLVPDFLAELESLTVLNLSGNNLQGSLPAGLVEKANNRSLSLSVE 478 (525)
Q Consensus 399 ~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~L~g~iP~~l~~l~~l~~l~L~l~ 478 (525)
+.+++++|+++ .+|..+. .+|+.|+|++|+|.+..|..|+.+++|+.|+|++|+|++..+..+.++.+|+.|+|+
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~-- 89 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLN-- 89 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC--
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECC--
Confidence 57999999997 7887765 899999999999999999999999999999999999996544456789999987765
Q ss_pred CCCC
Q 040922 479 RNPN 482 (525)
Q Consensus 479 ~N~~ 482 (525)
+|..
T Consensus 90 ~N~l 93 (174)
T 2r9u_A 90 DNHL 93 (174)
T ss_dssp SSCC
T ss_pred CCcc
Confidence 5543
No 66
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.53 E-value=8.7e-08 Score=86.65 Aligned_cols=83 Identities=24% Similarity=0.251 Sum_probs=71.9
Q ss_pred CCCceEEecCCCCCccCCCchhhccCCCcCEEEcCCCCCCCcC-chhccCCCCCCEEeCCCCcCCCCCC---hhhhcCCC
Q 040922 394 QPPRIISLNLSSSGISGEIDPYIFSLTSIESLDLSNNSLTGLV-PDFLAELESLTVLNLSGNNLQGSLP---AGLVEKAN 469 (525)
Q Consensus 394 ~~~~L~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~g~i-P~~l~~l~~L~~L~Ls~N~L~g~iP---~~l~~l~~ 469 (525)
.+++|+.|+|++|++++.+|..+..+++|+.|+|++|++++.. +..+..+++|+.|+|++|.+++..+ ..+..+++
T Consensus 69 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~ 148 (168)
T 2ell_A 69 KLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQ 148 (168)
T ss_dssp CCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSS
T ss_pred cCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCcc
Confidence 4578999999999999888888888999999999999999643 3789999999999999999995554 47888999
Q ss_pred CcEEEEE
Q 040922 470 NRSLSLS 476 (525)
Q Consensus 470 l~~l~L~ 476 (525)
|+.|++.
T Consensus 149 L~~L~l~ 155 (168)
T 2ell_A 149 LTYLDGY 155 (168)
T ss_dssp CCEETTE
T ss_pred CcEecCC
Confidence 9887665
No 67
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=98.53 E-value=8.6e-08 Score=97.55 Aligned_cols=80 Identities=24% Similarity=0.232 Sum_probs=45.6
Q ss_pred CceEEecCCCCCccCCCchhhccCCCcCEEEcCCCCCCCcCchhccCCCCCCEEeCCCCcCCCCCChhhhcCCCCcEEEE
Q 040922 396 PRIISLNLSSSGISGEIDPYIFSLTSIESLDLSNNSLTGLVPDFLAELESLTVLNLSGNNLQGSLPAGLVEKANNRSLSL 475 (525)
Q Consensus 396 ~~L~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~L~g~iP~~l~~l~~l~~l~L 475 (525)
++|+.|+|++|++++..+..+..+++|+.|+|++|++++..|..++.+++|++|+|++|++++..+..+.++.+|+.|++
T Consensus 52 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 131 (353)
T 2z80_A 52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNL 131 (353)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEEC
T ss_pred ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEEC
Confidence 35666666666666444445666666666666666666555555666666666666666666322222555555555443
No 68
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.52 E-value=1.4e-07 Score=86.05 Aligned_cols=80 Identities=25% Similarity=0.254 Sum_probs=68.6
Q ss_pred eEEecCCCCCccCCCchhhccCCCcCEEEcCCCCCCCcCchhccCCCCCCEEeCCCCcCCCCCChhhhcCCCCcEEEEEe
Q 040922 398 IISLNLSSSGISGEIDPYIFSLTSIESLDLSNNSLTGLVPDFLAELESLTVLNLSGNNLQGSLPAGLVEKANNRSLSLSV 477 (525)
Q Consensus 398 L~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~L~g~iP~~l~~l~~l~~l~L~l 477 (525)
.+.|++++|+++ .+|..+. .+|+.|+|++|+|++..|..|..+++|++|+|++|+|++..|..+..+.+|+.|+|+
T Consensus 11 ~~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~- 86 (170)
T 3g39_A 11 GTTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN- 86 (170)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC-
T ss_pred CCEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC-
Confidence 468999999999 6787664 899999999999999999999999999999999999996656567889999987765
Q ss_pred cCCCC
Q 040922 478 ERNPN 482 (525)
Q Consensus 478 ~~N~~ 482 (525)
+|..
T Consensus 87 -~N~l 90 (170)
T 3g39_A 87 -DNQL 90 (170)
T ss_dssp -SSCC
T ss_pred -CCcc
Confidence 5543
No 69
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=98.52 E-value=7.6e-08 Score=89.68 Aligned_cols=79 Identities=23% Similarity=0.219 Sum_probs=48.3
Q ss_pred CCceEEecCCCCCccCCCchhhccCCCcCEEEcCCCCCCCcCchhccCCCCCCEEeCCCCcCCCCCChhhhcCCCCcEEE
Q 040922 395 PPRIISLNLSSSGISGEIDPYIFSLTSIESLDLSNNSLTGLVPDFLAELESLTVLNLSGNNLQGSLPAGLVEKANNRSLS 474 (525)
Q Consensus 395 ~~~L~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~L~g~iP~~l~~l~~l~~l~ 474 (525)
+++|+.|+|++|++++..|..+..+++|+.|+|++|.+.+.+| .+..+++|+.|+|++|++++ ++ .+..+.+|+.|+
T Consensus 111 l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~ 187 (197)
T 4ezg_A 111 LTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLY 187 (197)
T ss_dssp CTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEE
T ss_pred CCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEE
Confidence 4566666666666666566666666666666666666222444 46666666666666666663 33 555666666654
Q ss_pred EE
Q 040922 475 LS 476 (525)
Q Consensus 475 L~ 476 (525)
++
T Consensus 188 l~ 189 (197)
T 4ezg_A 188 AF 189 (197)
T ss_dssp EC
T ss_pred ee
Confidence 43
No 70
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=98.51 E-value=1.6e-07 Score=98.64 Aligned_cols=94 Identities=21% Similarity=0.189 Sum_probs=61.8
Q ss_pred cccccCCCCC------CCCCceEEecCCCCCccCCCchhhccCCCcCEEEcCCCCCCCcCchhccCCCCCCEEeCCCCcC
Q 040922 383 WQGLNCSYDD------NQPPRIISLNLSSSGISGEIDPYIFSLTSIESLDLSNNSLTGLVPDFLAELESLTVLNLSGNNL 456 (525)
Q Consensus 383 w~gv~c~~~~------~~~~~L~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~L 456 (525)
|..+.|...+ +.++.++.|+|++|++++..+..|.++++|+.|+|++|++.+..+..|..+++|+.|+|++|++
T Consensus 45 ~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l 124 (440)
T 3zyj_A 45 FSKVICVRKNLREVPDGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRL 124 (440)
T ss_dssp SCEEECCSCCCSSCCSCCCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCC
T ss_pred CCEEEeCCCCcCcCCCCCCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcC
Confidence 4456676543 2245677777777777766666677777777777777777766667777777777777777777
Q ss_pred CCCCChhhhcCCCCcEEEEE
Q 040922 457 QGSLPAGLVEKANNRSLSLS 476 (525)
Q Consensus 457 ~g~iP~~l~~l~~l~~l~L~ 476 (525)
++..+..+..+.+|+.|+++
T Consensus 125 ~~~~~~~~~~l~~L~~L~L~ 144 (440)
T 3zyj_A 125 TTIPNGAFVYLSKLKELWLR 144 (440)
T ss_dssp SSCCTTTSCSCSSCCEEECC
T ss_pred CeeCHhHhhccccCceeeCC
Confidence 74444456666666665543
No 71
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=98.50 E-value=1.3e-07 Score=100.15 Aligned_cols=80 Identities=24% Similarity=0.245 Sum_probs=38.5
Q ss_pred CceEEecCCCCCccCCCchhhccCCCcCEEEcCCCCCCCcCchhccCCCCCCEEeCCCCcCCCCCChhhhcCCCCcEEEE
Q 040922 396 PRIISLNLSSSGISGEIDPYIFSLTSIESLDLSNNSLTGLVPDFLAELESLTVLNLSGNNLQGSLPAGLVEKANNRSLSL 475 (525)
Q Consensus 396 ~~L~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~L~g~iP~~l~~l~~l~~l~L 475 (525)
++|+.|+|++|.+++..|..|.++++|+.|+|++|++.+..+..|..+++|++|+|++|++++..|..+.++.+|+.|++
T Consensus 56 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l 135 (477)
T 2id5_A 56 PHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEV 135 (477)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEE
T ss_pred CCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEEC
Confidence 34444444444444444444444445555555555544333334444555555555555555444444555555555443
No 72
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=98.50 E-value=1.7e-07 Score=92.25 Aligned_cols=87 Identities=20% Similarity=0.156 Sum_probs=75.6
Q ss_pred CCCceEEecCCCCCccCCCchhhccCCCcCEEEcCCCCCCCcCchhccCCCCCCEEeCCCCcCCCCCChhhhcCCCCcEE
Q 040922 394 QPPRIISLNLSSSGISGEIDPYIFSLTSIESLDLSNNSLTGLVPDFLAELESLTVLNLSGNNLQGSLPAGLVEKANNRSL 473 (525)
Q Consensus 394 ~~~~L~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~L~g~iP~~l~~l~~l~~l 473 (525)
.+++|+.|+|++|++++..+..+..+++|+.|+|++|++++..+..+..+++|+.|+|++|++++..|..+.++.+|+.|
T Consensus 127 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 206 (285)
T 1ozn_A 127 GLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTL 206 (285)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEE
T ss_pred CCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEe
Confidence 35789999999999997666679999999999999999997777789999999999999999998889999999999887
Q ss_pred EEEecCCCC
Q 040922 474 SLSVERNPN 482 (525)
Q Consensus 474 ~L~l~~N~~ 482 (525)
+++ +|..
T Consensus 207 ~l~--~n~l 213 (285)
T 1ozn_A 207 YLF--ANNL 213 (285)
T ss_dssp ECC--SSCC
T ss_pred eCC--CCcC
Confidence 654 5543
No 73
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.48 E-value=1.7e-07 Score=94.96 Aligned_cols=79 Identities=19% Similarity=0.177 Sum_probs=70.5
Q ss_pred EecCCCC-CccCCCchhhccCCCcCEEEcCC-CCCCCcCchhccCCCCCCEEeCCCCcCCCCCChhhhcCCCCcEEEEEe
Q 040922 400 SLNLSSS-GISGEIDPYIFSLTSIESLDLSN-NSLTGLVPDFLAELESLTVLNLSGNNLQGSLPAGLVEKANNRSLSLSV 477 (525)
Q Consensus 400 ~L~Ls~n-~l~g~ip~~~~~L~~L~~L~Ls~-N~l~g~iP~~l~~l~~L~~L~Ls~N~L~g~iP~~l~~l~~l~~l~L~l 477 (525)
.++++++ +|+ .+|. +..+++|+.|+|++ |+|.+..|..|+.|++|+.|+|++|+|++..|..+.++.+|+.|+|+
T Consensus 12 ~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~- 88 (347)
T 2ifg_A 12 GLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS- 88 (347)
T ss_dssp CEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC-
T ss_pred EEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC-
Confidence 4688888 898 6888 99999999999996 99999888999999999999999999999888899999999987765
Q ss_pred cCCCC
Q 040922 478 ERNPN 482 (525)
Q Consensus 478 ~~N~~ 482 (525)
+|..
T Consensus 89 -~N~l 92 (347)
T 2ifg_A 89 -FNAL 92 (347)
T ss_dssp -SSCC
T ss_pred -CCcc
Confidence 5653
No 74
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=98.47 E-value=2.6e-07 Score=90.53 Aligned_cols=88 Identities=22% Similarity=0.308 Sum_probs=68.6
Q ss_pred CCCceEEecCCCCCccCCCchhhccCCCcCEEEcCCCCCCCc-CchhccCCCCCCEEeCCCCcCCCCCChhhhcCCCCcE
Q 040922 394 QPPRIISLNLSSSGISGEIDPYIFSLTSIESLDLSNNSLTGL-VPDFLAELESLTVLNLSGNNLQGSLPAGLVEKANNRS 472 (525)
Q Consensus 394 ~~~~L~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~g~-iP~~l~~l~~L~~L~Ls~N~L~g~iP~~l~~l~~l~~ 472 (525)
.+++|+.|++++|++++..+..+..+++|+.|+|++|++.+. +|..++.+++|++|+|++|++++..+..+..+.+++.
T Consensus 98 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 177 (276)
T 2z62_A 98 GLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPL 177 (276)
T ss_dssp TCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTT
T ss_pred CCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccc
Confidence 457888999999998876666788889999999999998863 6888899999999999999998766666766665553
Q ss_pred E--EEEecCCC
Q 040922 473 L--SLSVERNP 481 (525)
Q Consensus 473 l--~L~l~~N~ 481 (525)
+ .+++.+|+
T Consensus 178 l~l~L~ls~n~ 188 (276)
T 2z62_A 178 LNLSLDLSLNP 188 (276)
T ss_dssp CCEEEECCSSC
T ss_pred cceeeecCCCc
Confidence 2 45555665
No 75
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=98.47 E-value=5.5e-08 Score=97.41 Aligned_cols=86 Identities=20% Similarity=0.275 Sum_probs=69.5
Q ss_pred CCCceEEecCCCCCccCCCchhhccC-----CCcCEEEcCCCCCCCcCchhccCCCCCCEEeCCCCcCCCC--CChhh--
Q 040922 394 QPPRIISLNLSSSGISGEIDPYIFSL-----TSIESLDLSNNSLTGLVPDFLAELESLTVLNLSGNNLQGS--LPAGL-- 464 (525)
Q Consensus 394 ~~~~L~~L~Ls~n~l~g~ip~~~~~L-----~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~L~g~--iP~~l-- 464 (525)
.+++|+.|+|++|++++. |..+..+ ++|+.|+|++|++.+..|..++.+++|++|+|++|++.|. +|..+
T Consensus 119 ~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~ 197 (312)
T 1wwl_A 119 TGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCP 197 (312)
T ss_dssp CSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCT
T ss_pred cCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHh
Confidence 457899999999999876 7778777 8999999999999988888999999999999999998876 34455
Q ss_pred hcCCCCcEEEEEecCCCC
Q 040922 465 VEKANNRSLSLSVERNPN 482 (525)
Q Consensus 465 ~~l~~l~~l~L~l~~N~~ 482 (525)
..+.+|+.|+++ +|..
T Consensus 198 ~~l~~L~~L~L~--~N~l 213 (312)
T 1wwl_A 198 LKFPTLQVLALR--NAGM 213 (312)
T ss_dssp TSCTTCCEEECT--TSCC
T ss_pred ccCCCCCEEECC--CCcC
Confidence 677888876654 5543
No 76
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=98.47 E-value=4.6e-08 Score=107.98 Aligned_cols=82 Identities=15% Similarity=0.262 Sum_probs=55.1
Q ss_pred CCCceEEecCCCCCccCC-----------------Cchhhc--cCCCcCEEEcCCCCCCCcCchhccCCCCCCEEeCCCC
Q 040922 394 QPPRIISLNLSSSGISGE-----------------IDPYIF--SLTSIESLDLSNNSLTGLVPDFLAELESLTVLNLSGN 454 (525)
Q Consensus 394 ~~~~L~~L~Ls~n~l~g~-----------------ip~~~~--~L~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N 454 (525)
.+++|+.|+|++|.++|. +|..+. ++++|+.|+|++|++.|.+|..++.+++|++|+|++|
T Consensus 204 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n 283 (636)
T 4eco_A 204 RLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACN 283 (636)
T ss_dssp GCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTC
T ss_pred cccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCC
Confidence 345677777777777764 666666 7777777777777777777777777777777777777
Q ss_pred c-CCC-CCChhhhcC------CCCcEEEE
Q 040922 455 N-LQG-SLPAGLVEK------ANNRSLSL 475 (525)
Q Consensus 455 ~-L~g-~iP~~l~~l------~~l~~l~L 475 (525)
+ ++| .+|..++++ .+|+.|++
T Consensus 284 ~~l~~~~lp~~~~~L~~~~~l~~L~~L~L 312 (636)
T 4eco_A 284 RGISGEQLKDDWQALADAPVGEKIQIIYI 312 (636)
T ss_dssp TTSCHHHHHHHHHHHHHSGGGGTCCEEEC
T ss_pred CCCccccchHHHHhhhccccCCCCCEEEC
Confidence 6 666 666666655 56665544
No 77
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=98.46 E-value=3e-07 Score=85.62 Aligned_cols=85 Identities=18% Similarity=0.214 Sum_probs=74.9
Q ss_pred CCCceEEecCCCCCccCCCchhhccCCCcCEEEcCCCCCCCcCchhccCCCCCCEEeCCCCcCCCCCChhhhcCCCCcEE
Q 040922 394 QPPRIISLNLSSSGISGEIDPYIFSLTSIESLDLSNNSLTGLVPDFLAELESLTVLNLSGNNLQGSLPAGLVEKANNRSL 473 (525)
Q Consensus 394 ~~~~L~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~L~g~iP~~l~~l~~l~~l 473 (525)
.+++|+.|+|++|++++..+..+..+++|+.|+|++|++.+..|..++.+++|++|+|++|++.+.+| .+..+.+|+.|
T Consensus 86 ~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L 164 (197)
T 4ezg_A 86 GLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSL 164 (197)
T ss_dssp TCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEE
T ss_pred cCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEE
Confidence 35789999999999998889999999999999999999999899999999999999999998444777 68899999887
Q ss_pred EEEecCCC
Q 040922 474 SLSVERNP 481 (525)
Q Consensus 474 ~L~l~~N~ 481 (525)
+++ +|.
T Consensus 165 ~l~--~n~ 170 (197)
T 4ezg_A 165 NIQ--FDG 170 (197)
T ss_dssp ECT--TBC
T ss_pred ECC--CCC
Confidence 764 554
No 78
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=98.44 E-value=1.6e-07 Score=90.12 Aligned_cols=81 Identities=20% Similarity=0.180 Sum_probs=48.4
Q ss_pred CceEEecCCCCCccCCCchhhccCCCcCEEEcCCCC-CCCcCchhccCCCCCCEEeCCC-CcCCCCCChhhhcCCCCcEE
Q 040922 396 PRIISLNLSSSGISGEIDPYIFSLTSIESLDLSNNS-LTGLVPDFLAELESLTVLNLSG-NNLQGSLPAGLVEKANNRSL 473 (525)
Q Consensus 396 ~~L~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~-l~g~iP~~l~~l~~L~~L~Ls~-N~L~g~iP~~l~~l~~l~~l 473 (525)
+.++.|+|++|++++..+..|..+++|+.|+|++|+ +.+..+..|..+++|++|+|++ |++++..+..+.++.+|+.|
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 456666666666664444456666666666666665 5555555666666666666665 66664444445555556555
Q ss_pred EEE
Q 040922 474 SLS 476 (525)
Q Consensus 474 ~L~ 476 (525)
+++
T Consensus 111 ~l~ 113 (239)
T 2xwt_C 111 GIF 113 (239)
T ss_dssp EEE
T ss_pred eCC
Confidence 544
No 79
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=98.44 E-value=2.2e-07 Score=92.43 Aligned_cols=88 Identities=24% Similarity=0.207 Sum_probs=77.5
Q ss_pred CCCceEEecCCCCCccC-CCchhhccCCCcCEEEcCCCCCCCcCchhccCCCCCCEEeCCCCcCCCCCChhhhcCCCCcE
Q 040922 394 QPPRIISLNLSSSGISG-EIDPYIFSLTSIESLDLSNNSLTGLVPDFLAELESLTVLNLSGNNLQGSLPAGLVEKANNRS 472 (525)
Q Consensus 394 ~~~~L~~L~Ls~n~l~g-~ip~~~~~L~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~L~g~iP~~l~~l~~l~~ 472 (525)
.+++|+.|+|++|.+++ .+|..+..+++|+.|+|++|++.+..|..+..+++|+.|+|++|++++..+..+..+.+|+.
T Consensus 148 ~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 227 (306)
T 2z66_A 148 GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQV 227 (306)
T ss_dssp TCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCE
T ss_pred cCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCE
Confidence 35789999999999987 57888999999999999999999988999999999999999999999777778888999988
Q ss_pred EEEEecCCCCC
Q 040922 473 LSLSVERNPNF 483 (525)
Q Consensus 473 l~L~l~~N~~~ 483 (525)
|+++ +|+..
T Consensus 228 L~L~--~N~l~ 236 (306)
T 2z66_A 228 LDYS--LNHIM 236 (306)
T ss_dssp EECT--TSCCC
T ss_pred eECC--CCCCc
Confidence 7654 66543
No 80
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=98.44 E-value=3e-07 Score=98.89 Aligned_cols=82 Identities=17% Similarity=0.228 Sum_probs=48.0
Q ss_pred CCceEEecCCCCCccCCCchhhccCCCcCEEEcCCCCCCC-cCchhccCCCCCCEEeCCCCcCCCCCC-hhhhcCCCCcE
Q 040922 395 PPRIISLNLSSSGISGEIDPYIFSLTSIESLDLSNNSLTG-LVPDFLAELESLTVLNLSGNNLQGSLP-AGLVEKANNRS 472 (525)
Q Consensus 395 ~~~L~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~g-~iP~~l~~l~~L~~L~Ls~N~L~g~iP-~~l~~l~~l~~ 472 (525)
+++|+.|+|++|++++..|..+..+++|+.|+|++|++.+ .+|..++.+++|++|+|++|++.+.+| ..+.++.+|+.
T Consensus 73 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~ 152 (549)
T 2z81_A 73 LGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNE 152 (549)
T ss_dssp CTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEE
T ss_pred cccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCe
Confidence 4556666666666665555556666666666666666664 345556666666666666666444444 34555665555
Q ss_pred EEEE
Q 040922 473 LSLS 476 (525)
Q Consensus 473 l~L~ 476 (525)
|+++
T Consensus 153 L~L~ 156 (549)
T 2z81_A 153 LEIK 156 (549)
T ss_dssp EEEE
T ss_pred eecc
Confidence 5554
No 81
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=98.41 E-value=3e-07 Score=92.46 Aligned_cols=62 Identities=29% Similarity=0.361 Sum_probs=35.4
Q ss_pred CceEEecCCCCCccCCCchhhccCCCcCEEEcCCCCCCCcCchhccCCCCCCEEeCCCCcCCC
Q 040922 396 PRIISLNLSSSGISGEIDPYIFSLTSIESLDLSNNSLTGLVPDFLAELESLTVLNLSGNNLQG 458 (525)
Q Consensus 396 ~~L~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~L~g 458 (525)
++|+.|+|++|++++..+..+..+++|+.|+|++|++. .+|..+..+++|+.|+|++|++++
T Consensus 216 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~ 277 (330)
T 1xku_A 216 NNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISA 277 (330)
T ss_dssp TTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCC
T ss_pred CCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCc
Confidence 45555555555555444445555555555666555555 555555555555666666555553
No 82
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=98.41 E-value=5.9e-07 Score=90.31 Aligned_cols=83 Identities=29% Similarity=0.383 Sum_probs=65.8
Q ss_pred cccccccCCCCC------CCCCceEEecCCCCCccCCCchhhccCCCcCEEEcCCCCCCCcCchhccCCCCCCEEeCCCC
Q 040922 381 HLWQGLNCSYDD------NQPPRIISLNLSSSGISGEIDPYIFSLTSIESLDLSNNSLTGLVPDFLAELESLTVLNLSGN 454 (525)
Q Consensus 381 ~~w~gv~c~~~~------~~~~~L~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N 454 (525)
+.|..+.|+..+ ..++.++.|+|++|++++..+..+..+++|+.|+|++|++.+..|..++.+++|++|+|++|
T Consensus 31 c~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n 110 (330)
T 1xku_A 31 CHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN 110 (330)
T ss_dssp EETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS
T ss_pred CCCeEEEecCCCccccCccCCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCC
Confidence 467777776432 13467889999999998766668889999999999999999888888999999999998888
Q ss_pred cCCCCCChhh
Q 040922 455 NLQGSLPAGL 464 (525)
Q Consensus 455 ~L~g~iP~~l 464 (525)
+++ .+|..+
T Consensus 111 ~l~-~l~~~~ 119 (330)
T 1xku_A 111 QLK-ELPEKM 119 (330)
T ss_dssp CCS-BCCSSC
T ss_pred cCC-ccChhh
Confidence 887 565543
No 83
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=98.39 E-value=5e-07 Score=90.98 Aligned_cols=91 Identities=23% Similarity=0.262 Sum_probs=67.5
Q ss_pred cccccccCCCCC------CCCCceEEecCCCCCccCCCchhhccCCCcCEEEcCCCCCCCcCchhccCCCCCCEEeCCCC
Q 040922 381 HLWQGLNCSYDD------NQPPRIISLNLSSSGISGEIDPYIFSLTSIESLDLSNNSLTGLVPDFLAELESLTVLNLSGN 454 (525)
Q Consensus 381 ~~w~gv~c~~~~------~~~~~L~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N 454 (525)
+.|..+.|+..+ ..+++++.|+|++|++++..|..+..+++|+.|+|++|++++..|..++.+++|++|+|++|
T Consensus 33 c~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 112 (332)
T 2ft3_A 33 CHLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKN 112 (332)
T ss_dssp EETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSS
T ss_pred ccCCEEECCCCCccccCCCCCCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCC
Confidence 357777776433 12457888888888888666778888888888888888888888888888888888888888
Q ss_pred cCCCCCChhhhcCCCCcEEE
Q 040922 455 NLQGSLPAGLVEKANNRSLS 474 (525)
Q Consensus 455 ~L~g~iP~~l~~l~~l~~l~ 474 (525)
+++ .+|..+. .+|+.|+
T Consensus 113 ~l~-~l~~~~~--~~L~~L~ 129 (332)
T 2ft3_A 113 HLV-EIPPNLP--SSLVELR 129 (332)
T ss_dssp CCC-SCCSSCC--TTCCEEE
T ss_pred cCC-ccCcccc--ccCCEEE
Confidence 887 5665443 3444433
No 84
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=98.39 E-value=4.7e-07 Score=96.81 Aligned_cols=76 Identities=21% Similarity=0.270 Sum_probs=42.9
Q ss_pred CCceEEecCCCCCccCCCchhhccCCCcCEEEcCCCCCCC-cCchhccCCCCCCEEeCCCCcCCCCCChhhhcCCCC--c
Q 040922 395 PPRIISLNLSSSGISGEIDPYIFSLTSIESLDLSNNSLTG-LVPDFLAELESLTVLNLSGNNLQGSLPAGLVEKANN--R 471 (525)
Q Consensus 395 ~~~L~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~g-~iP~~l~~l~~L~~L~Ls~N~L~g~iP~~l~~l~~l--~ 471 (525)
+++|+.|+|++|+++ .+|.. .+++|+.|+|++|++++ .+|..++.+++|++|+|++|++++ ..+..+.+| +
T Consensus 68 l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~ 141 (520)
T 2z7x_B 68 NQELEYLDLSHNKLV-KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNIS 141 (520)
T ss_dssp CTTCCEEECCSSCCC-EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEE
T ss_pred ccCCCEEecCCCcee-ecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceee
Confidence 355666666666665 45544 56666666666666665 355666666666666666666654 233444444 4
Q ss_pred EEEEE
Q 040922 472 SLSLS 476 (525)
Q Consensus 472 ~l~L~ 476 (525)
.|+++
T Consensus 142 ~L~l~ 146 (520)
T 2z7x_B 142 KVLLV 146 (520)
T ss_dssp EEEEE
T ss_pred EEEee
Confidence 44443
No 85
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.39 E-value=4.7e-07 Score=98.99 Aligned_cols=79 Identities=23% Similarity=0.227 Sum_probs=50.6
Q ss_pred CCCceEEecCCCCCccCCCchhhccCCCcCEEEcCCCCCCCcCchhccCCCCCCEEeCCCCcCCCCCChhhhcCCCCcEE
Q 040922 394 QPPRIISLNLSSSGISGEIDPYIFSLTSIESLDLSNNSLTGLVPDFLAELESLTVLNLSGNNLQGSLPAGLVEKANNRSL 473 (525)
Q Consensus 394 ~~~~L~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~L~g~iP~~l~~l~~l~~l 473 (525)
.+++|+.|+|++|.+++..+..|..+++|+.|+|++|.+.+..|..++.+++|+.|+|++|.+++. + +..+.+|+.|
T Consensus 121 ~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~--~~~l~~L~~L 197 (597)
T 3oja_B 121 NVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV-D--LSLIPSLFHA 197 (597)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC-C--GGGCTTCSEE
T ss_pred CCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc-C--hhhhhhhhhh
Confidence 345677777777777744333456777777777777777776676777777777777777777743 2 3334445554
Q ss_pred EE
Q 040922 474 SL 475 (525)
Q Consensus 474 ~L 475 (525)
++
T Consensus 198 ~l 199 (597)
T 3oja_B 198 NV 199 (597)
T ss_dssp EC
T ss_pred hc
Confidence 43
No 86
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.39 E-value=2.8e-07 Score=103.35 Aligned_cols=83 Identities=34% Similarity=0.353 Sum_probs=76.2
Q ss_pred CCCceEEecCCCCCccCCCchhhccCCCcCEEEcCCCCCCCcCchhccCCCCCCEEeCCCCcCCCCCChhhhcCCCCcEE
Q 040922 394 QPPRIISLNLSSSGISGEIDPYIFSLTSIESLDLSNNSLTGLVPDFLAELESLTVLNLSGNNLQGSLPAGLVEKANNRSL 473 (525)
Q Consensus 394 ~~~~L~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~L~g~iP~~l~~l~~l~~l 473 (525)
.++.|+.|+|++|.+. .+|..+..|++|+.|+|++|.|+ .+|..++.|++|+.|+|++|+|+ .+|..++++.+|+.|
T Consensus 222 ~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L 298 (727)
T 4b8c_D 222 DDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYF 298 (727)
T ss_dssp CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEE
T ss_pred cCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEE
Confidence 3578999999999999 88989999999999999999999 89999999999999999999999 899999999999987
Q ss_pred EEEecCCC
Q 040922 474 SLSVERNP 481 (525)
Q Consensus 474 ~L~l~~N~ 481 (525)
+|+ +|.
T Consensus 299 ~L~--~N~ 304 (727)
T 4b8c_D 299 YFF--DNM 304 (727)
T ss_dssp ECC--SSC
T ss_pred ECC--CCC
Confidence 765 554
No 87
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=98.39 E-value=3.1e-07 Score=92.57 Aligned_cols=87 Identities=25% Similarity=0.256 Sum_probs=61.2
Q ss_pred CCceEEecCCCCCccCCCchhhccCCCcCEEEcCCCCCCCcCchhccCCCCCCEEeCCCCcCCCCCChhhhcC------C
Q 040922 395 PPRIISLNLSSSGISGEIDPYIFSLTSIESLDLSNNSLTGLVPDFLAELESLTVLNLSGNNLQGSLPAGLVEK------A 468 (525)
Q Consensus 395 ~~~L~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~L~g~iP~~l~~l------~ 468 (525)
+++|+.|+|++|++++..+..+..+++|+.|+|++|++. .+|..+..+++|+.|+|++|++++..+..+... .
T Consensus 216 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~ 294 (332)
T 2ft3_A 216 YSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRA 294 (332)
T ss_dssp CTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSC
T ss_pred CCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccccccc
Confidence 467778888888888766667788888888888888887 777777888888888888888875444444332 2
Q ss_pred CCcEEEEEecCCCCCC
Q 040922 469 NNRSLSLSVERNPNFC 484 (525)
Q Consensus 469 ~l~~l~L~l~~N~~~C 484 (525)
.++. +++.+||+.+
T Consensus 295 ~l~~--L~l~~N~~~~ 308 (332)
T 2ft3_A 295 YYNG--ISLFNNPVPY 308 (332)
T ss_dssp CBSE--EECCSSSSCG
T ss_pred cccc--eEeecCcccc
Confidence 3333 4556777764
No 88
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.38 E-value=3.8e-07 Score=99.29 Aligned_cols=79 Identities=29% Similarity=0.372 Sum_probs=71.0
Q ss_pred ceEEecCCCCCccCCCchhhccCCCcCEEEcCCCCCCCcCchhccCCCCCCEEeCCCCcCCCCCChhhhcCCCCcEEEEE
Q 040922 397 RIISLNLSSSGISGEIDPYIFSLTSIESLDLSNNSLTGLVPDFLAELESLTVLNLSGNNLQGSLPAGLVEKANNRSLSLS 476 (525)
Q Consensus 397 ~L~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~L~g~iP~~l~~l~~l~~l~L~ 476 (525)
.|+.|+|++|+|++ +|. +..|++|+.|+|++|+|+ .+|..++.+++|+.|+|++|+|++ +| .++.+.+|+.|+|+
T Consensus 442 ~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls 516 (567)
T 1dce_A 442 DVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLC 516 (567)
T ss_dssp TCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECC
T ss_pred CceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECC
Confidence 58899999999995 676 999999999999999999 899999999999999999999996 78 89999999987765
Q ss_pred ecCCCC
Q 040922 477 VERNPN 482 (525)
Q Consensus 477 l~~N~~ 482 (525)
+|..
T Consensus 517 --~N~l 520 (567)
T 1dce_A 517 --NNRL 520 (567)
T ss_dssp --SSCC
T ss_pred --CCCC
Confidence 5653
No 89
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=98.38 E-value=7.4e-07 Score=98.61 Aligned_cols=86 Identities=26% Similarity=0.257 Sum_probs=72.3
Q ss_pred CCCceEEecCCCCCccCCCchhhccCCCcCEEEcCCCCCCCcCchhccCCCCCCEEeCCCCcCCCCCChhhh--cCCCCc
Q 040922 394 QPPRIISLNLSSSGISGEIDPYIFSLTSIESLDLSNNSLTGLVPDFLAELESLTVLNLSGNNLQGSLPAGLV--EKANNR 471 (525)
Q Consensus 394 ~~~~L~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~L~g~iP~~l~--~l~~l~ 471 (525)
.+++|+.|+|++|++++..|..|..+++|+.|+|++|.+.+..|..++.+++|++|+|++|++++..|..+. .+.+|+
T Consensus 95 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~ 174 (680)
T 1ziw_A 95 FCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLK 174 (680)
T ss_dssp TCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEES
T ss_pred cCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhcccccccc
Confidence 457899999999999977778899999999999999999999999999999999999999999977776654 346677
Q ss_pred EEEEEecCCC
Q 040922 472 SLSLSVERNP 481 (525)
Q Consensus 472 ~l~L~l~~N~ 481 (525)
.|++ .+|.
T Consensus 175 ~L~L--~~n~ 182 (680)
T 1ziw_A 175 KLEL--SSNQ 182 (680)
T ss_dssp EEEC--TTCC
T ss_pred EEEC--CCCc
Confidence 6654 4554
No 90
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=98.37 E-value=9.3e-08 Score=108.91 Aligned_cols=73 Identities=21% Similarity=0.286 Sum_probs=40.7
Q ss_pred CCceEEecCCCCCccC-----------------CCchhhc--cCCCcCEEEcCCCCCCCcCchhccCCCCCCEEeCCCCc
Q 040922 395 PPRIISLNLSSSGISG-----------------EIDPYIF--SLTSIESLDLSNNSLTGLVPDFLAELESLTVLNLSGNN 455 (525)
Q Consensus 395 ~~~L~~L~Ls~n~l~g-----------------~ip~~~~--~L~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~ 455 (525)
+++|+.|+|++|+|+| .+|..++ +|++|+.|+|++|++.|.+|..++.+++|+.|+|++|+
T Consensus 447 L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~ 526 (876)
T 4ecn_A 447 LTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNR 526 (876)
T ss_dssp CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCT
T ss_pred CCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCC
Confidence 3455555555555555 2555544 55555555555555555555555555555555555555
Q ss_pred -CCC-CCChhhhcC
Q 040922 456 -LQG-SLPAGLVEK 467 (525)
Q Consensus 456 -L~g-~iP~~l~~l 467 (525)
++| .+|..++++
T Consensus 527 ~lsg~~iP~~i~~L 540 (876)
T 4ecn_A 527 GISAAQLKADWTRL 540 (876)
T ss_dssp TSCHHHHHHHHHHH
T ss_pred CcccccchHHHHhh
Confidence 555 555544443
No 91
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=98.37 E-value=1e-06 Score=87.44 Aligned_cols=77 Identities=34% Similarity=0.455 Sum_probs=66.9
Q ss_pred CCCceEEecCCCCCccCCCchhhccCCCcCEEEcCCCCCCCcCchhccCCCCCCEEeCCCCcCCCCCChhhhcCCCCcEE
Q 040922 394 QPPRIISLNLSSSGISGEIDPYIFSLTSIESLDLSNNSLTGLVPDFLAELESLTVLNLSGNNLQGSLPAGLVEKANNRSL 473 (525)
Q Consensus 394 ~~~~L~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~L~g~iP~~l~~l~~l~~l 473 (525)
.+++|+.|+|++|++++. +.+..+++|+.|+|++|++.+..| +..+++|+.|+|++|++++ +|. +..+.+|+.|
T Consensus 132 ~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~-l~~-l~~l~~L~~L 205 (291)
T 1h6t_A 132 HLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD-LRA-LAGLKNLDVL 205 (291)
T ss_dssp GCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-CGG-GTTCTTCSEE
T ss_pred CCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCC-Chh-hccCCCCCEE
Confidence 357899999999999965 679999999999999999997655 8999999999999999994 554 8889999988
Q ss_pred EEE
Q 040922 474 SLS 476 (525)
Q Consensus 474 ~L~ 476 (525)
+++
T Consensus 206 ~l~ 208 (291)
T 1h6t_A 206 ELF 208 (291)
T ss_dssp EEE
T ss_pred ECc
Confidence 876
No 92
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.36 E-value=3.3e-07 Score=83.64 Aligned_cols=81 Identities=26% Similarity=0.222 Sum_probs=69.2
Q ss_pred CCCceEEecCCCCCccCCCchhhccCCCcCEEEcCCCCCCCcCch--hccCCCCCCEEeCCCCcCCCCCChh----hhcC
Q 040922 394 QPPRIISLNLSSSGISGEIDPYIFSLTSIESLDLSNNSLTGLVPD--FLAELESLTVLNLSGNNLQGSLPAG----LVEK 467 (525)
Q Consensus 394 ~~~~L~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~g~iP~--~l~~l~~L~~L~Ls~N~L~g~iP~~----l~~l 467 (525)
.+++|+.|+|++|++++..+..+..+++|+.|+|++|++. .+|. .+..+++|+.|+|++|.++ .+|.. +..+
T Consensus 62 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l 139 (176)
T 1a9n_A 62 LLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKV 139 (176)
T ss_dssp CCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHC
T ss_pred cCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHC
Confidence 4578999999999999554444699999999999999996 6676 8899999999999999998 67775 8889
Q ss_pred CCCcEEEEE
Q 040922 468 ANNRSLSLS 476 (525)
Q Consensus 468 ~~l~~l~L~ 476 (525)
++|+.|+++
T Consensus 140 ~~L~~Ld~~ 148 (176)
T 1a9n_A 140 PQVRVLDFQ 148 (176)
T ss_dssp TTCSEETTE
T ss_pred CccceeCCC
Confidence 999887654
No 93
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=98.36 E-value=6.7e-07 Score=92.13 Aligned_cols=78 Identities=23% Similarity=0.251 Sum_probs=53.9
Q ss_pred CCCceEEecCCCCCccCCCchh-hccCCCcCEEEcCCCCCCCcCchhccCCCCCCEEeCCCCcCCCCCChhhhcCCCCcE
Q 040922 394 QPPRIISLNLSSSGISGEIDPY-IFSLTSIESLDLSNNSLTGLVPDFLAELESLTVLNLSGNNLQGSLPAGLVEKANNRS 472 (525)
Q Consensus 394 ~~~~L~~L~Ls~n~l~g~ip~~-~~~L~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~L~g~iP~~l~~l~~l~~ 472 (525)
.+++|+.|+|++|+++ .+|.. +..+++|+.|+|++|++.+..|..++.+++|+.|+|++|++++. + +..+.+|+.
T Consensus 115 ~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~--~~~l~~L~~ 190 (390)
T 3o6n_A 115 NVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV-D--LSLIPSLFH 190 (390)
T ss_dssp TCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC-C--GGGCTTCSE
T ss_pred CCCCCCEEECCCCccC-cCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc-c--cccccccce
Confidence 3567778888888877 44443 57778888888888888777777777788888888888877743 2 334455555
Q ss_pred EEE
Q 040922 473 LSL 475 (525)
Q Consensus 473 l~L 475 (525)
+++
T Consensus 191 L~l 193 (390)
T 3o6n_A 191 ANV 193 (390)
T ss_dssp EEC
T ss_pred eec
Confidence 443
No 94
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=98.36 E-value=1.6e-07 Score=93.98 Aligned_cols=85 Identities=21% Similarity=0.280 Sum_probs=69.2
Q ss_pred CceEEecCCCCCccCCCchhhccCCCcCEEEcCCCCCCCc--Cchhc--cCCCCCCEEeCCCCcCCC--CCChhh-hcCC
Q 040922 396 PRIISLNLSSSGISGEIDPYIFSLTSIESLDLSNNSLTGL--VPDFL--AELESLTVLNLSGNNLQG--SLPAGL-VEKA 468 (525)
Q Consensus 396 ~~L~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~g~--iP~~l--~~l~~L~~L~Ls~N~L~g--~iP~~l-~~l~ 468 (525)
++|+.|+|++|++++..|..+..+++|+.|+|++|++.|. +|..+ +.+++|+.|+|++|++++ .++..+ ..+.
T Consensus 149 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~ 228 (312)
T 1wwl_A 149 PGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARV 228 (312)
T ss_dssp TTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTC
T ss_pred CCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCC
Confidence 7899999999999988888999999999999999999876 34455 889999999999999983 334343 4678
Q ss_pred CCcEEEEEecCCCC
Q 040922 469 NNRSLSLSVERNPN 482 (525)
Q Consensus 469 ~l~~l~L~l~~N~~ 482 (525)
+|+.|+++ +|..
T Consensus 229 ~L~~L~Ls--~N~l 240 (312)
T 1wwl_A 229 QLQGLDLS--HNSL 240 (312)
T ss_dssp CCSEEECT--TSCC
T ss_pred CCCEEECC--CCcC
Confidence 88887654 5653
No 95
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=98.36 E-value=1.6e-07 Score=94.29 Aligned_cols=84 Identities=21% Similarity=0.199 Sum_probs=48.1
Q ss_pred CceEEecCCCCCccCCCchhhccCCCcCEEEcCCCCCCCcCchhccCCCCCCEEeCCCCcCCCCCChhhhcCCCCcEEEE
Q 040922 396 PRIISLNLSSSGISGEIDPYIFSLTSIESLDLSNNSLTGLVPDFLAELESLTVLNLSGNNLQGSLPAGLVEKANNRSLSL 475 (525)
Q Consensus 396 ~~L~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~L~g~iP~~l~~l~~l~~l~L 475 (525)
++|+.|+|++|++++. + ....+++|+.|+|++|++++. |..+..+++|+.|+|++|+++ .+|..+..+.+|+.|+
T Consensus 169 ~~L~~L~L~~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~- 243 (317)
T 3o53_A 169 DTLEHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFD- 243 (317)
T ss_dssp TTCCEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEE-
T ss_pred CcCCEEECCCCcCccc-c-cccccccCCEEECCCCcCCcc-hhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEE-
Confidence 4566666666666533 2 223366666666666666643 333666666666666666666 4566565556555533
Q ss_pred EecCCCCCCC
Q 040922 476 SVERNPNFCL 485 (525)
Q Consensus 476 ~l~~N~~~C~ 485 (525)
+.+|++.|+
T Consensus 244 -l~~N~~~~~ 252 (317)
T 3o53_A 244 -LRGNGFHCG 252 (317)
T ss_dssp -CTTCCCBHH
T ss_pred -ccCCCccCc
Confidence 346666654
No 96
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=98.36 E-value=6.7e-07 Score=90.89 Aligned_cols=82 Identities=17% Similarity=0.193 Sum_probs=53.7
Q ss_pred CCceEEecCCCCCccCCCchhhccCCCcCEEEcCCCCCCCcCc-hhccCCCCCCEEeCCCC-cCCCCCChhhhcCCCCcE
Q 040922 395 PPRIISLNLSSSGISGEIDPYIFSLTSIESLDLSNNSLTGLVP-DFLAELESLTVLNLSGN-NLQGSLPAGLVEKANNRS 472 (525)
Q Consensus 395 ~~~L~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~g~iP-~~l~~l~~L~~L~Ls~N-~L~g~iP~~l~~l~~l~~ 472 (525)
+++|+.|+|++|++++..+..+..+++|+.|+|++|++.+..+ ..+..+++|+.|++++| .+++..|..+.++.+|+.
T Consensus 99 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~ 178 (353)
T 2z80_A 99 LGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEE 178 (353)
T ss_dssp CTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEE
T ss_pred CCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCE
Confidence 4567777777777774434447777777777777777774333 36677777777777777 355444556666766666
Q ss_pred EEEE
Q 040922 473 LSLS 476 (525)
Q Consensus 473 l~L~ 476 (525)
|+++
T Consensus 179 L~l~ 182 (353)
T 2z80_A 179 LEID 182 (353)
T ss_dssp EEEE
T ss_pred EECC
Confidence 6554
No 97
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.34 E-value=1.8e-07 Score=99.94 Aligned_cols=71 Identities=24% Similarity=0.346 Sum_probs=34.7
Q ss_pred CceEEecCCCCCccCCCchhhccCCCcCEEEcCCCCCCCcCchhccCCCCCCEEeCCCCcCC-CCCChhhhcCC
Q 040922 396 PRIISLNLSSSGISGEIDPYIFSLTSIESLDLSNNSLTGLVPDFLAELESLTVLNLSGNNLQ-GSLPAGLVEKA 468 (525)
Q Consensus 396 ~~L~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~L~-g~iP~~l~~l~ 468 (525)
++|+.|+|++|.+++ +|+.+..+++|+.|+|++|.|++ +|..+..+++|+.|+|++|.+. +.+|..+..+.
T Consensus 191 ~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~ 262 (487)
T 3oja_A 191 AKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQ 262 (487)
T ss_dssp TTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCH
T ss_pred CCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHHhCC
Confidence 445555555555553 33335555555555555555552 4444555555555555555554 44444444433
No 98
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=98.31 E-value=6.2e-07 Score=97.15 Aligned_cols=80 Identities=24% Similarity=0.157 Sum_probs=59.9
Q ss_pred CCCceEEecCCCCCccCCCchhhccCCCcCEEEcCCCCCCCcCchhccCCCCCCEEeCCCCcCCC-CCChhhhcCCCCcE
Q 040922 394 QPPRIISLNLSSSGISGEIDPYIFSLTSIESLDLSNNSLTGLVPDFLAELESLTVLNLSGNNLQG-SLPAGLVEKANNRS 472 (525)
Q Consensus 394 ~~~~L~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~L~g-~iP~~l~~l~~l~~ 472 (525)
.+++|+.|+|++|++++..|..|..+++|+.|+|++|+++ .+|.. .+++|++|+|++|++++ .+|..+.++.+|+.
T Consensus 74 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~ 150 (562)
T 3a79_B 74 FLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTF 150 (562)
T ss_dssp TCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCE
T ss_pred cCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc--ccccCCEEECCCCCccccCchHhhcccCcccE
Confidence 3567777777777777666777777777777777777777 55555 67788888888888875 45678888888888
Q ss_pred EEEE
Q 040922 473 LSLS 476 (525)
Q Consensus 473 l~L~ 476 (525)
|+++
T Consensus 151 L~L~ 154 (562)
T 3a79_B 151 LGLS 154 (562)
T ss_dssp EEEE
T ss_pred EecC
Confidence 7766
No 99
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=98.30 E-value=6.6e-07 Score=96.54 Aligned_cols=82 Identities=23% Similarity=0.206 Sum_probs=56.5
Q ss_pred CCceEEecCCCCCccCCCchhhccCCCcCEEEcCCCCCCCcCchhccCCCCCCEEeCCCCcCCCCCChhhhcCCCCcEEE
Q 040922 395 PPRIISLNLSSSGISGEIDPYIFSLTSIESLDLSNNSLTGLVPDFLAELESLTVLNLSGNNLQGSLPAGLVEKANNRSLS 474 (525)
Q Consensus 395 ~~~L~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~L~g~iP~~l~~l~~l~~l~ 474 (525)
+++|+.|+|++|++++..+..|.++++|+.|+|++|++.+..|..|+.+++|++|+|++|++++..+..++++.+|+.|+
T Consensus 51 l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~ 130 (570)
T 2z63_A 51 FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELN 130 (570)
T ss_dssp CSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEE
T ss_pred CCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccccccCCCccccccccccEEe
Confidence 45677777777777765566677777777777777777766667777777777777777777744333566777777665
Q ss_pred EE
Q 040922 475 LS 476 (525)
Q Consensus 475 L~ 476 (525)
++
T Consensus 131 L~ 132 (570)
T 2z63_A 131 VA 132 (570)
T ss_dssp CC
T ss_pred cC
Confidence 54
No 100
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=98.29 E-value=1.3e-06 Score=87.25 Aligned_cols=83 Identities=20% Similarity=0.375 Sum_probs=65.2
Q ss_pred CCCceEEecCCCCCccCCCchhhccCCCcCEEEcCCCCCCCcCchhccCCCCCCEEeCCCCcCCCCCChhhhcCCCCcEE
Q 040922 394 QPPRIISLNLSSSGISGEIDPYIFSLTSIESLDLSNNSLTGLVPDFLAELESLTVLNLSGNNLQGSLPAGLVEKANNRSL 473 (525)
Q Consensus 394 ~~~~L~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~L~g~iP~~l~~l~~l~~l 473 (525)
.+++|+.|+|++|++++ ++. +..+++|+.|+|++|++++..+ +..+++|++|+|++|++++..| +..+.+|+.|
T Consensus 149 ~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L 222 (308)
T 1h6u_A 149 GLTNLQYLSIGNAQVSD-LTP-LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIV 222 (308)
T ss_dssp GCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEE
T ss_pred CCCCccEEEccCCcCCC-Chh-hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEE
Confidence 35688999999999985 444 8889999999999999986544 7889999999999999985443 7788888887
Q ss_pred EEEecCCCCCC
Q 040922 474 SLSVERNPNFC 484 (525)
Q Consensus 474 ~L~l~~N~~~C 484 (525)
+++ +|+..+
T Consensus 223 ~l~--~N~i~~ 231 (308)
T 1h6u_A 223 TLT--NQTITN 231 (308)
T ss_dssp EEE--EEEEEC
T ss_pred Ecc--CCeeec
Confidence 765 565533
No 101
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.29 E-value=8.5e-07 Score=97.23 Aligned_cols=76 Identities=33% Similarity=0.447 Sum_probs=56.7
Q ss_pred CCceEEecCCCCCccCCCchhhccCCCcCEEEcCCCCCCCcCchhccCCCCCCEEeCCCCcCCCCCChhhhcCCCCcEEE
Q 040922 395 PPRIISLNLSSSGISGEIDPYIFSLTSIESLDLSNNSLTGLVPDFLAELESLTVLNLSGNNLQGSLPAGLVEKANNRSLS 474 (525)
Q Consensus 395 ~~~L~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~L~g~iP~~l~~l~~l~~l~ 474 (525)
+++|+.|+|++|+|++. ..+..|++|+.|+|++|+|.+..| +..+++|+.|+|++|+|++ +| .+..+.+|+.|+
T Consensus 130 l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~-l~-~l~~l~~L~~L~ 203 (605)
T 1m9s_A 130 LPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLE 203 (605)
T ss_dssp CTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEE
T ss_pred CCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEE
Confidence 46788888888888754 567788888888888888886655 7788888888888888875 33 577777777766
Q ss_pred EE
Q 040922 475 LS 476 (525)
Q Consensus 475 L~ 476 (525)
|+
T Consensus 204 L~ 205 (605)
T 1m9s_A 204 LF 205 (605)
T ss_dssp CC
T ss_pred cc
Confidence 54
No 102
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=98.29 E-value=1.2e-06 Score=88.51 Aligned_cols=76 Identities=29% Similarity=0.316 Sum_probs=47.8
Q ss_pred CCceEEecCCCCCccCCCchhhccCCCcCEEEcCCCCCCCcCchhccCCCCCCEEeCCCCcCCCCCChhhhcCCCCcEEE
Q 040922 395 PPRIISLNLSSSGISGEIDPYIFSLTSIESLDLSNNSLTGLVPDFLAELESLTVLNLSGNNLQGSLPAGLVEKANNRSLS 474 (525)
Q Consensus 395 ~~~L~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~L~g~iP~~l~~l~~l~~l~ 474 (525)
+++|+.|++++|++++. +.+..+++|+.|+|++|++.+..|..++.+++|+.|+|++|++++..| +..+.+|+.++
T Consensus 264 l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~ 339 (347)
T 4fmz_A 264 LTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSAD 339 (347)
T ss_dssp CTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEES
T ss_pred CCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceee
Confidence 45666666666666643 346666666666666666666666666666666666666666665444 55566665543
No 103
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=98.28 E-value=1e-06 Score=90.68 Aligned_cols=86 Identities=22% Similarity=0.203 Sum_probs=75.5
Q ss_pred CCCceEEecCCCCCccCCCchhhccCCCcCEEEcCCCCCCCcCchhccCCCCCCEEeCCCCcCCCCCChhhhcCCCCcEE
Q 040922 394 QPPRIISLNLSSSGISGEIDPYIFSLTSIESLDLSNNSLTGLVPDFLAELESLTVLNLSGNNLQGSLPAGLVEKANNRSL 473 (525)
Q Consensus 394 ~~~~L~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~L~g~iP~~l~~l~~l~~l 473 (525)
.+++|+.|+|++|++++..|..+..+++|+.|+|++|++....+..++.+++|++|+|++|++++..|..+.++.+|+.|
T Consensus 91 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 170 (390)
T 3o6n_A 91 YAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNL 170 (390)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEE
T ss_pred CCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEE
Confidence 46799999999999998888889999999999999999995555567999999999999999998778889999999987
Q ss_pred EEEecCCC
Q 040922 474 SLSVERNP 481 (525)
Q Consensus 474 ~L~l~~N~ 481 (525)
+++ +|.
T Consensus 171 ~l~--~n~ 176 (390)
T 3o6n_A 171 QLS--SNR 176 (390)
T ss_dssp ECC--SSC
T ss_pred ECC--CCc
Confidence 765 554
No 104
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=98.28 E-value=7.2e-07 Score=101.62 Aligned_cols=86 Identities=24% Similarity=0.198 Sum_probs=76.5
Q ss_pred CCCceEEecCCCCCccCCCchhhccCCCcCEEEcCCCCCCCcCchh--ccCCCCCCEEeCCCCcCCCCCC-hhhhcCCCC
Q 040922 394 QPPRIISLNLSSSGISGEIDPYIFSLTSIESLDLSNNSLTGLVPDF--LAELESLTVLNLSGNNLQGSLP-AGLVEKANN 470 (525)
Q Consensus 394 ~~~~L~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~g~iP~~--l~~l~~L~~L~Ls~N~L~g~iP-~~l~~l~~l 470 (525)
.+++|+.|+|++|++++..|..|..+++|+.|+|++|.+.+.+|.. ++.+++|++|+|++|++++..| ..+.++.+|
T Consensus 71 ~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L 150 (844)
T 3j0a_A 71 NLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSL 150 (844)
T ss_dssp SCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSC
T ss_pred CCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCC
Confidence 5679999999999999888999999999999999999999877765 9999999999999999997765 578999999
Q ss_pred cEEEEEecCCC
Q 040922 471 RSLSLSVERNP 481 (525)
Q Consensus 471 ~~l~L~l~~N~ 481 (525)
+.|+++ +|.
T Consensus 151 ~~L~Ls--~N~ 159 (844)
T 3j0a_A 151 KSIDFS--SNQ 159 (844)
T ss_dssp CEEEEE--SSC
T ss_pred CEEECC--CCc
Confidence 998876 454
No 105
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.28 E-value=9.5e-07 Score=96.57 Aligned_cols=86 Identities=22% Similarity=0.203 Sum_probs=76.9
Q ss_pred CCCceEEecCCCCCccCCCchhhccCCCcCEEEcCCCCCCCcCchhccCCCCCCEEeCCCCcCCCCCChhhhcCCCCcEE
Q 040922 394 QPPRIISLNLSSSGISGEIDPYIFSLTSIESLDLSNNSLTGLVPDFLAELESLTVLNLSGNNLQGSLPAGLVEKANNRSL 473 (525)
Q Consensus 394 ~~~~L~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~L~g~iP~~l~~l~~l~~l 473 (525)
.+++|+.|+|++|.+++..|..|..+++|+.|+|++|.+.+..+..|+.+++|++|+|++|.+++..|..+..+.+|+.|
T Consensus 97 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 176 (597)
T 3oja_B 97 YAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNL 176 (597)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEE
T ss_pred CCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEE
Confidence 46799999999999998888889999999999999999997666778999999999999999998888889999999987
Q ss_pred EEEecCCC
Q 040922 474 SLSVERNP 481 (525)
Q Consensus 474 ~L~l~~N~ 481 (525)
+++ +|.
T Consensus 177 ~L~--~N~ 182 (597)
T 3oja_B 177 QLS--SNR 182 (597)
T ss_dssp ECT--TSC
T ss_pred ECc--CCC
Confidence 654 554
No 106
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.27 E-value=1.5e-06 Score=84.89 Aligned_cols=81 Identities=25% Similarity=0.382 Sum_probs=66.8
Q ss_pred CceEEecCCCCCccCCCchhhccCCCcCEEEcCCCCCCCcCchhccCCCCCCEEeCCCCcCCCCCChhhhcCCCCcEEEE
Q 040922 396 PRIISLNLSSSGISGEIDPYIFSLTSIESLDLSNNSLTGLVPDFLAELESLTVLNLSGNNLQGSLPAGLVEKANNRSLSL 475 (525)
Q Consensus 396 ~~L~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~L~g~iP~~l~~l~~l~~l~L 475 (525)
++|+.|+|++|++++ ++ .+..+++|+.|+|++|++++. | .++.+++|+.|+|++|++++. ..+..+.+|+.|++
T Consensus 106 ~~L~~L~L~~N~l~~-~~-~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l 179 (263)
T 1xeu_A 106 ACLSRLFLDNNELRD-TD-SLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDL 179 (263)
T ss_dssp SSCCEEECCSSCCSB-SG-GGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEE
T ss_pred CcccEEEccCCccCC-Ch-hhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeC
Confidence 578999999999985 33 689999999999999999964 4 688999999999999999965 66788888888776
Q ss_pred EecCCCCCC
Q 040922 476 SVERNPNFC 484 (525)
Q Consensus 476 ~l~~N~~~C 484 (525)
+ +|+..|
T Consensus 180 ~--~N~~~~ 186 (263)
T 1xeu_A 180 T--GQKCVN 186 (263)
T ss_dssp E--EEEEEC
T ss_pred C--CCcccC
Confidence 5 555444
No 107
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.27 E-value=1.4e-06 Score=95.40 Aligned_cols=80 Identities=34% Similarity=0.485 Sum_probs=69.2
Q ss_pred CCCceEEecCCCCCccCCCchhhccCCCcCEEEcCCCCCCCcCchhccCCCCCCEEeCCCCcCCCCCChhhhcCCCCcEE
Q 040922 394 QPPRIISLNLSSSGISGEIDPYIFSLTSIESLDLSNNSLTGLVPDFLAELESLTVLNLSGNNLQGSLPAGLVEKANNRSL 473 (525)
Q Consensus 394 ~~~~L~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~L~g~iP~~l~~l~~l~~l 473 (525)
.+++|+.|+|++|++++ + +.+..|++|+.|+|++|+|++. ..++.|++|+.|+|++|+|++..| +..+.+|+.|
T Consensus 107 ~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L 180 (605)
T 1m9s_A 107 DLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNL 180 (605)
T ss_dssp TCTTCCEEECTTSCCCC-C-GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEE
T ss_pred cCCCCCEEEecCCCCCC-C-ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEE
Confidence 45789999999999995 3 4699999999999999999975 678999999999999999997666 8889999987
Q ss_pred EEEecCCC
Q 040922 474 SLSVERNP 481 (525)
Q Consensus 474 ~L~l~~N~ 481 (525)
+|+ +|.
T Consensus 181 ~Ls--~N~ 186 (605)
T 1m9s_A 181 YLS--KNH 186 (605)
T ss_dssp ECC--SSC
T ss_pred ECc--CCC
Confidence 765 553
No 108
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=98.23 E-value=6.9e-07 Score=85.55 Aligned_cols=79 Identities=16% Similarity=0.237 Sum_probs=48.6
Q ss_pred CCceEEecCCC-CCccCCCchhhccCCCcCEEEcCCCCCCCcCchhccCCCCCC---EEeCCCC-cCCCCCChhhhcCCC
Q 040922 395 PPRIISLNLSS-SGISGEIDPYIFSLTSIESLDLSNNSLTGLVPDFLAELESLT---VLNLSGN-NLQGSLPAGLVEKAN 469 (525)
Q Consensus 395 ~~~L~~L~Ls~-n~l~g~ip~~~~~L~~L~~L~Ls~N~l~g~iP~~l~~l~~L~---~L~Ls~N-~L~g~iP~~l~~l~~ 469 (525)
+++|+.|+|++ |++++..+..|..+++|+.|+|++|++++ +|. +..+++|+ .|+|++| ++++..+..+..+.+
T Consensus 79 l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~ 156 (239)
T 2xwt_C 79 LSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCN 156 (239)
T ss_dssp CTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBS
T ss_pred CcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhc
Confidence 35666677766 66664444556666677777777777664 554 66666666 7777776 666444444556666
Q ss_pred Cc-EEEE
Q 040922 470 NR-SLSL 475 (525)
Q Consensus 470 l~-~l~L 475 (525)
|+ .|++
T Consensus 157 L~~~L~l 163 (239)
T 2xwt_C 157 ETLTLKL 163 (239)
T ss_dssp SEEEEEC
T ss_pred ceeEEEc
Confidence 65 4443
No 109
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=98.23 E-value=6.5e-07 Score=89.41 Aligned_cols=86 Identities=16% Similarity=0.118 Sum_probs=65.1
Q ss_pred CCCceEEecCCCCCccCCCc----hhhccCCCcCEEEcCCCCCCCcCchhccCCCCCCEEeCCCCcCCCC--CC--hhhh
Q 040922 394 QPPRIISLNLSSSGISGEID----PYIFSLTSIESLDLSNNSLTGLVPDFLAELESLTVLNLSGNNLQGS--LP--AGLV 465 (525)
Q Consensus 394 ~~~~L~~L~Ls~n~l~g~ip----~~~~~L~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~L~g~--iP--~~l~ 465 (525)
.+++|+.|+|++|++++..+ ..+..+++|+.|+|++|++.+..|..++.+++|++|+|++|++.+. ++ ..+.
T Consensus 115 ~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~ 194 (310)
T 4glp_A 115 TGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPH 194 (310)
T ss_dssp CCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTT
T ss_pred cCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhh
Confidence 45788899999999887655 3456788999999999999888888889999999999999988753 22 2235
Q ss_pred cCCCCcEEEEEecCCC
Q 040922 466 EKANNRSLSLSVERNP 481 (525)
Q Consensus 466 ~l~~l~~l~L~l~~N~ 481 (525)
.+.+|+.|+++ +|.
T Consensus 195 ~l~~L~~L~Ls--~N~ 208 (310)
T 4glp_A 195 KFPAIQNLALR--NTG 208 (310)
T ss_dssp SSCCCCSCBCC--SSC
T ss_pred cCCCCCEEECC--CCC
Confidence 67777776554 553
No 110
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=98.20 E-value=1e-06 Score=87.95 Aligned_cols=81 Identities=31% Similarity=0.391 Sum_probs=56.6
Q ss_pred CCceEEecCCCCCccCCCchhhccC---CCcCEEEcCCCCCCCcCchhccCCCCCCEEeCCCCcCCCCCChhhhcCCCCc
Q 040922 395 PPRIISLNLSSSGISGEIDPYIFSL---TSIESLDLSNNSLTGLVPDFLAELESLTVLNLSGNNLQGSLPAGLVEKANNR 471 (525)
Q Consensus 395 ~~~L~~L~Ls~n~l~g~ip~~~~~L---~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~L~g~iP~~l~~l~~l~ 471 (525)
+++|+.|+|++|++++..|..+..+ ++|+.|+|++|+++ .+|..+. ++|+.|+|++|++++ +|. +..+.+|+
T Consensus 223 l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~-~~~-~~~l~~L~ 297 (310)
T 4glp_A 223 GVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNR-APQ-PDELPEVD 297 (310)
T ss_dssp TCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCS-CCC-TTSCCCCS
T ss_pred CCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCC-Cch-hhhCCCcc
Confidence 3577788888888887777776666 57888888888888 6666553 688888888888885 233 45556666
Q ss_pred EEEEEecCCCC
Q 040922 472 SLSLSVERNPN 482 (525)
Q Consensus 472 ~l~L~l~~N~~ 482 (525)
.|+ +++|+.
T Consensus 298 ~L~--L~~N~l 306 (310)
T 4glp_A 298 NLT--LDGNPF 306 (310)
T ss_dssp CEE--CSSTTT
T ss_pred EEE--CcCCCC
Confidence 654 446765
No 111
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.15 E-value=2e-06 Score=84.25 Aligned_cols=78 Identities=24% Similarity=0.301 Sum_probs=61.4
Q ss_pred CCceEEecCCCCCccC--CCchhhccCCCcCEEEcCCCCCCCcCchhccCCC--CCCEEeCCCCcCCCCCCh-------h
Q 040922 395 PPRIISLNLSSSGISG--EIDPYIFSLTSIESLDLSNNSLTGLVPDFLAELE--SLTVLNLSGNNLQGSLPA-------G 463 (525)
Q Consensus 395 ~~~L~~L~Ls~n~l~g--~ip~~~~~L~~L~~L~Ls~N~l~g~iP~~l~~l~--~L~~L~Ls~N~L~g~iP~-------~ 463 (525)
+++|+.|+|++|+|++ .+|..+..+++|+.|+|++|+|.+. ..+..+. +|+.|+|++|.+.+.+|. .
T Consensus 169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~i 246 (267)
T 3rw6_A 169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAI 246 (267)
T ss_dssp CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHH
T ss_pred CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHHHH
Confidence 4689999999999997 5567788899999999999999975 3344444 899999999999987773 2
Q ss_pred hhcCCCCcEEE
Q 040922 464 LVEKANNRSLS 474 (525)
Q Consensus 464 l~~l~~l~~l~ 474 (525)
+..+++|+.|+
T Consensus 247 l~~~P~L~~LD 257 (267)
T 3rw6_A 247 RERFPKLLRLD 257 (267)
T ss_dssp HHHCTTCCEES
T ss_pred HHHCcccCeEC
Confidence 56777776643
No 112
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.15 E-value=1.1e-06 Score=89.36 Aligned_cols=96 Identities=18% Similarity=0.195 Sum_probs=76.0
Q ss_pred cccccccCCCCC------CCCCceEEecCCCCCccCCCchhhccCCCcCEEEcCCCCCCCcCc-hhccCCCCCCE-EeCC
Q 040922 381 HLWQGLNCSYDD------NQPPRIISLNLSSSGISGEIDPYIFSLTSIESLDLSNNSLTGLVP-DFLAELESLTV-LNLS 452 (525)
Q Consensus 381 ~~w~gv~c~~~~------~~~~~L~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~g~iP-~~l~~l~~L~~-L~Ls 452 (525)
|.+..|.|+..+ +.+++++.|+|++|+|+...+..|.+|++|+.|+|++|++.+.+| ..|.++++|+. +.++
T Consensus 9 C~~~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 9 CSNRVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp EETTEEEEESTTCCSCCTTCCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred eeCCEEEecCCCCCccCcCcCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 467778886543 235689999999999994444569999999999999999977666 46788888875 6667
Q ss_pred CCcCCCCCChhhhcCCCCcEEEEE
Q 040922 453 GNNLQGSLPAGLVEKANNRSLSLS 476 (525)
Q Consensus 453 ~N~L~g~iP~~l~~l~~l~~l~L~ 476 (525)
+|++++..|..+..+.+|+.|+++
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~l~ 112 (350)
T 4ay9_X 89 ANNLLYINPEAFQNLPNLQYLLIS 112 (350)
T ss_dssp ETTCCEECTTSBCCCTTCCEEEEE
T ss_pred CCcccccCchhhhhcccccccccc
Confidence 899996667778888999888876
No 113
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=98.14 E-value=4.3e-06 Score=82.83 Aligned_cols=80 Identities=33% Similarity=0.457 Sum_probs=67.7
Q ss_pred CCCceEEecCCCCCccCCCchhhccCCCcCEEEcCCCCCCCcCchhccCCCCCCEEeCCCCcCCCCCChhhhcCCCCcEE
Q 040922 394 QPPRIISLNLSSSGISGEIDPYIFSLTSIESLDLSNNSLTGLVPDFLAELESLTVLNLSGNNLQGSLPAGLVEKANNRSL 473 (525)
Q Consensus 394 ~~~~L~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~L~g~iP~~l~~l~~l~~l 473 (525)
.+++|+.|+|++|++++. +.+..+++|+.|+|++|++++. ..++.+++|+.|+|++|++++..| +..+.+|+.|
T Consensus 110 ~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L 183 (291)
T 1h6t_A 110 DLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNL 183 (291)
T ss_dssp TCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEE
T ss_pred cCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEE
Confidence 357899999999999863 5789999999999999999965 678999999999999999996544 8888999887
Q ss_pred EEEecCCC
Q 040922 474 SLSVERNP 481 (525)
Q Consensus 474 ~L~l~~N~ 481 (525)
+++ +|.
T Consensus 184 ~L~--~N~ 189 (291)
T 1h6t_A 184 YLS--KNH 189 (291)
T ss_dssp ECC--SSC
T ss_pred ECC--CCc
Confidence 765 554
No 114
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=98.11 E-value=2.8e-06 Score=84.85 Aligned_cols=58 Identities=22% Similarity=0.411 Sum_probs=30.0
Q ss_pred CceEEecCCCCCccCCCchhhccCCCcCEEEcCCCCCCCcCchhccCCCCCCEEeCCCCcCC
Q 040922 396 PRIISLNLSSSGISGEIDPYIFSLTSIESLDLSNNSLTGLVPDFLAELESLTVLNLSGNNLQ 457 (525)
Q Consensus 396 ~~L~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~L~ 457 (525)
++|+.|+|++|++++..+ +..+++|+.|+|++|++.+..| +..+++|+.|+|++|+++
T Consensus 173 ~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~ 230 (308)
T 1h6u_A 173 SKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTIT 230 (308)
T ss_dssp TTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEE
T ss_pred CCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeee
Confidence 455555555555553222 4555555555555555553332 455555555555555554
No 115
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.08 E-value=2.4e-06 Score=91.16 Aligned_cols=82 Identities=23% Similarity=0.207 Sum_probs=66.7
Q ss_pred CCceEEecCCCCCccCCCchhhc-cCCCcCEEEcCCCCCCCcCchhccCCCCCCEEeCCCCcCCCCCChhhhcCCCCcEE
Q 040922 395 PPRIISLNLSSSGISGEIDPYIF-SLTSIESLDLSNNSLTGLVPDFLAELESLTVLNLSGNNLQGSLPAGLVEKANNRSL 473 (525)
Q Consensus 395 ~~~L~~L~Ls~n~l~g~ip~~~~-~L~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~L~g~iP~~l~~l~~l~~l 473 (525)
+++|+.|+|++|.+++.+|..+. .+++|+.|+|++|.+++..+ +..+++|+.|+|++|+|++ +|+.+..+.+|+.|
T Consensus 143 l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L 219 (487)
T 3oja_A 143 RSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWI 219 (487)
T ss_dssp GSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEE
T ss_pred CCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccccc--cccCCCCCEEECCCCCCCC-CCHhHcCCCCccEE
Confidence 56899999999999988888876 78999999999999986632 3468999999999999995 66668889999887
Q ss_pred EEEecCCC
Q 040922 474 SLSVERNP 481 (525)
Q Consensus 474 ~L~l~~N~ 481 (525)
+++ +|.
T Consensus 220 ~Ls--~N~ 225 (487)
T 3oja_A 220 SLR--NNK 225 (487)
T ss_dssp ECT--TSC
T ss_pred Eec--CCc
Confidence 654 554
No 116
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=98.03 E-value=5.3e-06 Score=83.02 Aligned_cols=83 Identities=23% Similarity=0.214 Sum_probs=68.8
Q ss_pred CCceEEecCCCCCccCCCchhh-ccCCCcCEEEcCCCCCCCcCchhccCCCCCCEEeCCCCcCCCCCChhhhcCCCCcEE
Q 040922 395 PPRIISLNLSSSGISGEIDPYI-FSLTSIESLDLSNNSLTGLVPDFLAELESLTVLNLSGNNLQGSLPAGLVEKANNRSL 473 (525)
Q Consensus 395 ~~~L~~L~Ls~n~l~g~ip~~~-~~L~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~L~g~iP~~l~~l~~l~~l 473 (525)
+++|+.|+|++|++++..+..+ ..+++|+.|+|++|++++. |. ...+++|+.|+|++|+++ .+|..+..+.+|+.|
T Consensus 143 l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L 219 (317)
T 3o53_A 143 RSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWI 219 (317)
T ss_dssp GSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCC-EECGGGGGGTTCSEE
T ss_pred cCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-cc-ccccccCCEEECCCCcCC-cchhhhcccCcccEE
Confidence 4689999999999998777776 4799999999999999965 33 345899999999999999 567779899999987
Q ss_pred EEEecCCCC
Q 040922 474 SLSVERNPN 482 (525)
Q Consensus 474 ~L~l~~N~~ 482 (525)
+++ +|..
T Consensus 220 ~L~--~N~l 226 (317)
T 3o53_A 220 SLR--NNKL 226 (317)
T ss_dssp ECT--TSCC
T ss_pred ECc--CCcc
Confidence 654 6653
No 117
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=98.02 E-value=9e-06 Score=81.97 Aligned_cols=85 Identities=24% Similarity=0.262 Sum_probs=72.4
Q ss_pred CCCceEEecCCCCCccCCCchhhccCCCcCEEEcCCCCCCCcCchhccCCCCCCEEeCCCCcCCCCCChhhhcCCCCcEE
Q 040922 394 QPPRIISLNLSSSGISGEIDPYIFSLTSIESLDLSNNSLTGLVPDFLAELESLTVLNLSGNNLQGSLPAGLVEKANNRSL 473 (525)
Q Consensus 394 ~~~~L~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~L~g~iP~~l~~l~~l~~l 473 (525)
.+++|+.|++++|.+++ + +.+..+++|+.|++++|++.+. ..+..+++|+.|+|++|++++..|..+..+.+|+.|
T Consensus 241 ~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 316 (347)
T 4fmz_A 241 NLSQLTWLEIGTNQISD-I-NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTL 316 (347)
T ss_dssp TCTTCCEEECCSSCCCC-C-GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEE
T ss_pred cCCCCCEEECCCCccCC-C-hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEE
Confidence 45789999999999985 3 5689999999999999999964 458899999999999999998888999999999887
Q ss_pred EEEecCCCCCC
Q 040922 474 SLSVERNPNFC 484 (525)
Q Consensus 474 ~L~l~~N~~~C 484 (525)
+++ +|+...
T Consensus 317 ~L~--~n~l~~ 325 (347)
T 4fmz_A 317 FLS--QNHITD 325 (347)
T ss_dssp ECC--SSSCCC
T ss_pred Ecc--CCcccc
Confidence 654 776544
No 118
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=98.01 E-value=1.3e-05 Score=88.17 Aligned_cols=78 Identities=26% Similarity=0.375 Sum_probs=60.5
Q ss_pred CCceEEecCCCCCccCCCchhhccCCCcCEEEcCCCCCCCcCchhccCCCCCCEEeCCCCcCCCCCChhhhcCCCCcEEE
Q 040922 395 PPRIISLNLSSSGISGEIDPYIFSLTSIESLDLSNNSLTGLVPDFLAELESLTVLNLSGNNLQGSLPAGLVEKANNRSLS 474 (525)
Q Consensus 395 ~~~L~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~L~g~iP~~l~~l~~l~~l~ 474 (525)
+++|+.|+|++|+|++ +| ..+++|+.|+|++|+|+ .+|. .+++|+.|+|++|+|+ .+|..+.++.+|+.|+
T Consensus 220 ~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~ 290 (622)
T 3g06_A 220 PSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVN 290 (622)
T ss_dssp CTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEE
T ss_pred CCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEE
Confidence 4678888888888884 55 45678888888888888 4565 6688888899888888 7888888888887765
Q ss_pred EEecCCCCC
Q 040922 475 LSVERNPNF 483 (525)
Q Consensus 475 L~l~~N~~~ 483 (525)
| .+|+..
T Consensus 291 L--~~N~l~ 297 (622)
T 3g06_A 291 L--EGNPLS 297 (622)
T ss_dssp C--CSCCCC
T ss_pred e--cCCCCC
Confidence 4 467654
No 119
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=97.98 E-value=6.7e-07 Score=83.23 Aligned_cols=77 Identities=25% Similarity=0.298 Sum_probs=67.8
Q ss_pred CCceEEecCCCCCccCCCchhhccCCCcCEEEcCCCCCCCcCchhccCCCCCCEEeCCCCcCCCCCChhhhcCCCCcEEE
Q 040922 395 PPRIISLNLSSSGISGEIDPYIFSLTSIESLDLSNNSLTGLVPDFLAELESLTVLNLSGNNLQGSLPAGLVEKANNRSLS 474 (525)
Q Consensus 395 ~~~L~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~L~g~iP~~l~~l~~l~~l~ 474 (525)
+++|+.|+|++|++++ +| .+..+++|+.|+|++|++. .+|..+..+++|+.|+|++|++++ +| .+..+.+|+.|+
T Consensus 47 l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~ 121 (198)
T 1ds9_A 47 LKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVNLRVLY 121 (198)
T ss_dssp TTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEE
T ss_pred CCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCCCEEE
Confidence 5689999999999996 77 8999999999999999999 788888888999999999999995 56 688888888877
Q ss_pred EE
Q 040922 475 LS 476 (525)
Q Consensus 475 L~ 476 (525)
++
T Consensus 122 l~ 123 (198)
T 1ds9_A 122 MS 123 (198)
T ss_dssp ES
T ss_pred CC
Confidence 65
No 120
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=97.95 E-value=7.9e-06 Score=86.27 Aligned_cols=83 Identities=23% Similarity=0.238 Sum_probs=65.7
Q ss_pred CCCceEEecCCCCCccCCCchhhccCCCcCEEEcCCCCCCCcCchhccCCCCCCEEeCCCCcCCCCCChhhhcCCCCcEE
Q 040922 394 QPPRIISLNLSSSGISGEIDPYIFSLTSIESLDLSNNSLTGLVPDFLAELESLTVLNLSGNNLQGSLPAGLVEKANNRSL 473 (525)
Q Consensus 394 ~~~~L~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~L~g~iP~~l~~l~~l~~l 473 (525)
.+++|+.|+|++|++++..| +..+++|+.|++++|.+++. ..+..+++|+.|++++|++++..| +.++.+|+.|
T Consensus 307 ~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L 380 (466)
T 1o6v_A 307 NLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQL 380 (466)
T ss_dssp GCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEE
T ss_pred CCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEE
Confidence 35688899999999887655 78889999999999998865 467889999999999999997776 7788888876
Q ss_pred EEEecCCCCCC
Q 040922 474 SLSVERNPNFC 484 (525)
Q Consensus 474 ~L~l~~N~~~C 484 (525)
++ .+|++.+
T Consensus 381 ~l--~~n~~~~ 389 (466)
T 1o6v_A 381 GL--NDQAWTN 389 (466)
T ss_dssp EC--CCEEEEC
T ss_pred ec--cCCcccC
Confidence 54 3555433
No 121
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=97.95 E-value=8e-06 Score=88.73 Aligned_cols=67 Identities=15% Similarity=0.248 Sum_probs=41.0
Q ss_pred CceEEecCCCCCccCCCchhhccCCCc-------CEEEcCCCCCCCcCchhccCCCCCCEEeCCCCcCCCCCChhhhcC
Q 040922 396 PRIISLNLSSSGISGEIDPYIFSLTSI-------ESLDLSNNSLTGLVPDFLAELESLTVLNLSGNNLQGSLPAGLVEK 467 (525)
Q Consensus 396 ~~L~~L~Ls~n~l~g~ip~~~~~L~~L-------~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~L~g~iP~~l~~l 467 (525)
++|+.|+|++|+|+ .+|. +.. +| +.|+|++|+|+ .+|..+..+++|+.|+|++|.|++.+|..+.++
T Consensus 180 ~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l 253 (571)
T 3cvr_A 180 ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQ 253 (571)
T ss_dssp TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHH
T ss_pred CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHh
Confidence 45666666666666 5555 443 55 66666666666 466666666667777777777766666665543
No 122
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=97.94 E-value=9.4e-06 Score=79.17 Aligned_cols=79 Identities=28% Similarity=0.344 Sum_probs=64.3
Q ss_pred CCCceEEecCCCCCccCCCchhhccCCCcCEEEcCCCCCCCcCchhccCCCCCCEEeCCCCcCCCCCChhhhcCCCCcEE
Q 040922 394 QPPRIISLNLSSSGISGEIDPYIFSLTSIESLDLSNNSLTGLVPDFLAELESLTVLNLSGNNLQGSLPAGLVEKANNRSL 473 (525)
Q Consensus 394 ~~~~L~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~L~g~iP~~l~~l~~l~~l 473 (525)
.+++|+.|+|++|++++. ++ +..+++|+.|+|++|++++ +|... . ++|+.|+|++|++++ +| .+..+.+|+.|
T Consensus 61 ~l~~L~~L~L~~N~i~~~-~~-l~~l~~L~~L~L~~N~l~~-l~~~~-~-~~L~~L~L~~N~l~~-~~-~l~~l~~L~~L 133 (263)
T 1xeu_A 61 FFTNLKELHLSHNQISDL-SP-LKDLTKLEELSVNRNRLKN-LNGIP-S-ACLSRLFLDNNELRD-TD-SLIHLKNLEIL 133 (263)
T ss_dssp GCTTCCEEECCSSCCCCC-GG-GTTCSSCCEEECCSSCCSC-CTTCC-C-SSCCEEECCSSCCSB-SG-GGTTCTTCCEE
T ss_pred hCCCCCEEECCCCccCCC-hh-hccCCCCCEEECCCCccCC-cCccc-c-CcccEEEccCCccCC-Ch-hhcCcccccEE
Confidence 357899999999999954 44 9999999999999999996 44433 3 999999999999995 44 58889999887
Q ss_pred EEEecCCC
Q 040922 474 SLSVERNP 481 (525)
Q Consensus 474 ~L~l~~N~ 481 (525)
+++ +|.
T Consensus 134 ~Ls--~N~ 139 (263)
T 1xeu_A 134 SIR--NNK 139 (263)
T ss_dssp ECT--TSC
T ss_pred ECC--CCc
Confidence 654 554
No 123
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=97.94 E-value=6.2e-06 Score=89.63 Aligned_cols=69 Identities=28% Similarity=0.403 Sum_probs=50.5
Q ss_pred CceEEecCCCCCccCCCchhhccCCCcCEEEcCCCCCCCcCchhccCCCCCCEEeCCCCcCCCCCChhhhcCCCCcEEEE
Q 040922 396 PRIISLNLSSSGISGEIDPYIFSLTSIESLDLSNNSLTGLVPDFLAELESLTVLNLSGNNLQGSLPAGLVEKANNRSLSL 475 (525)
Q Consensus 396 ~~L~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~L~g~iP~~l~~l~~l~~l~L 475 (525)
++|+.|+|++|+|+ .+| ..+++|+.|+|++|+|++ +|. +.. +|+.|+|++|+|++ +|. .+.+|+.|++
T Consensus 80 ~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~L 147 (571)
T 3cvr_A 80 PQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINA 147 (571)
T ss_dssp TTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEEC
T ss_pred CCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCCCcCCC-CCC---cCccccEEeC
Confidence 56888888888887 666 456788888888888886 666 554 78888888888885 666 4566666554
Q ss_pred E
Q 040922 476 S 476 (525)
Q Consensus 476 ~ 476 (525)
+
T Consensus 148 s 148 (571)
T 3cvr_A 148 D 148 (571)
T ss_dssp C
T ss_pred C
Confidence 3
No 124
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=97.94 E-value=2.5e-06 Score=87.75 Aligned_cols=88 Identities=18% Similarity=0.155 Sum_probs=72.2
Q ss_pred CCceEEecCCCCCcc----CCCchhhccCCCcCEEEcCCCCCCCc----CchhccC--CCCCCEEeCCCCcCCC----CC
Q 040922 395 PPRIISLNLSSSGIS----GEIDPYIFSLTSIESLDLSNNSLTGL----VPDFLAE--LESLTVLNLSGNNLQG----SL 460 (525)
Q Consensus 395 ~~~L~~L~Ls~n~l~----g~ip~~~~~L~~L~~L~Ls~N~l~g~----iP~~l~~--l~~L~~L~Ls~N~L~g----~i 460 (525)
+++|+.|+|++|.++ +.+|..+..+++|+.|+|++|.+.+. +|..+.. +++|+.|+|++|++++ .+
T Consensus 215 ~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l 294 (386)
T 2ca6_A 215 CQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTL 294 (386)
T ss_dssp CTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHH
T ss_pred CCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHH
Confidence 468999999999996 67888899999999999999999876 6777744 8999999999999997 58
Q ss_pred Chhh-hcCCCCcEEEEEecCCCCCC
Q 040922 461 PAGL-VEKANNRSLSLSVERNPNFC 484 (525)
Q Consensus 461 P~~l-~~l~~l~~l~L~l~~N~~~C 484 (525)
|..+ .++++|+.|++ .+|+..+
T Consensus 295 ~~~l~~~l~~L~~L~l--~~N~l~~ 317 (386)
T 2ca6_A 295 KTVIDEKMPDLLFLEL--NGNRFSE 317 (386)
T ss_dssp HHHHHHHCTTCCEEEC--TTSBSCT
T ss_pred HHHHHhcCCCceEEEc--cCCcCCc
Confidence 8888 56788887654 4776543
No 125
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=97.93 E-value=2.2e-06 Score=86.02 Aligned_cols=80 Identities=25% Similarity=0.285 Sum_probs=46.3
Q ss_pred CceEEecCCCCCccCC-CchhhccCCCcCEEEcCCCCCCCcCchhccCCCCCCEEeCCCC-cCCC-CCChhhhcCCCCcE
Q 040922 396 PRIISLNLSSSGISGE-IDPYIFSLTSIESLDLSNNSLTGLVPDFLAELESLTVLNLSGN-NLQG-SLPAGLVEKANNRS 472 (525)
Q Consensus 396 ~~L~~L~Ls~n~l~g~-ip~~~~~L~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N-~L~g-~iP~~l~~l~~l~~ 472 (525)
++|+.|+|++|.+++. ++..+..+++|+.|+|++|.+.+..|..++.+++|++|+|++| .+++ .+|..+.++.+|+.
T Consensus 93 ~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~ 172 (336)
T 2ast_B 93 FRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDE 172 (336)
T ss_dssp BCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCE
T ss_pred CCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCE
Confidence 4566666666665544 5555566666666666666666555666666666666666666 4554 24444555555555
Q ss_pred EEE
Q 040922 473 LSL 475 (525)
Q Consensus 473 l~L 475 (525)
|++
T Consensus 173 L~l 175 (336)
T 2ast_B 173 LNL 175 (336)
T ss_dssp EEC
T ss_pred EcC
Confidence 443
No 126
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=97.91 E-value=2.3e-05 Score=82.77 Aligned_cols=60 Identities=25% Similarity=0.203 Sum_probs=34.6
Q ss_pred CCceEEecCCCCCccCCCchhhccCCCcCEEEcCCCCCCCcCchhccCCCCCCEEeCCCCcCCCCC
Q 040922 395 PPRIISLNLSSSGISGEIDPYIFSLTSIESLDLSNNSLTGLVPDFLAELESLTVLNLSGNNLQGSL 460 (525)
Q Consensus 395 ~~~L~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~L~g~i 460 (525)
++.|+.|++++|++++. .+..+++|+.|+|++|++++ +| ++.+++|+.|+|++|++++..
T Consensus 190 l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~ 249 (457)
T 3bz5_A 190 NKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELD 249 (457)
T ss_dssp CTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCC
T ss_pred CCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcC
Confidence 34555555555555543 25556666666666666665 44 556666666666666666543
No 127
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=97.90 E-value=2.1e-05 Score=82.98 Aligned_cols=76 Identities=28% Similarity=0.427 Sum_probs=45.7
Q ss_pred CCceEEecCCCCCccCCCchhhccCCCcCEEEcCCCCCCCcCchhccCCCCCCEEeCCCCcCCCCCChhhhcCCCCcEEE
Q 040922 395 PPRIISLNLSSSGISGEIDPYIFSLTSIESLDLSNNSLTGLVPDFLAELESLTVLNLSGNNLQGSLPAGLVEKANNRSLS 474 (525)
Q Consensus 395 ~~~L~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~L~g~iP~~l~~l~~l~~l~ 474 (525)
+++|+.|+|++|.+++. ++ +..+++|+.|+|++|++.+..| ++.+++|++|+|++|++++ +|. +.++.+|+.|+
T Consensus 67 l~~L~~L~Ls~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~-~~~-~~~l~~L~~L~ 140 (466)
T 1o6v_A 67 LNNLTQINFSNNQLTDI-TP-LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITD-IDP-LKNLTNLNRLE 140 (466)
T ss_dssp CTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-CGG-GTTCTTCSEEE
T ss_pred hcCCCEEECCCCccCCc-hh-hhccccCCEEECCCCccccChh--hcCCCCCCEEECCCCCCCC-ChH-HcCCCCCCEEE
Confidence 34666666666666643 32 6666666666666666664433 6666666666666666663 332 55666666655
Q ss_pred EE
Q 040922 475 LS 476 (525)
Q Consensus 475 L~ 476 (525)
++
T Consensus 141 l~ 142 (466)
T 1o6v_A 141 LS 142 (466)
T ss_dssp EE
T ss_pred CC
Confidence 54
No 128
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=97.89 E-value=3.7e-07 Score=84.99 Aligned_cols=85 Identities=22% Similarity=0.237 Sum_probs=72.0
Q ss_pred CCceEEecCCCCCccCCCchhhccCCCcCEEEcCCCCCCCcCchhccCCCCCCEEeCCCCcCCCCCC--hhhhcCCCCcE
Q 040922 395 PPRIISLNLSSSGISGEIDPYIFSLTSIESLDLSNNSLTGLVPDFLAELESLTVLNLSGNNLQGSLP--AGLVEKANNRS 472 (525)
Q Consensus 395 ~~~L~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~L~g~iP--~~l~~l~~l~~ 472 (525)
+++|+.|+|++|+++ .+|..+..+++|+.|+|++|++++ +| .+..+++|+.|+|++|++++ +| ..+..+.+|+.
T Consensus 69 l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~-~~~~~~l~~l~~L~~ 144 (198)
T 1ds9_A 69 MENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITN-WGEIDKLAALDKLED 144 (198)
T ss_dssp HTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCC-HHHHHHHTTTTTCSE
T ss_pred CCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCc-hhHHHHHhcCCCCCE
Confidence 468999999999999 788888889999999999999996 55 68899999999999999994 44 47888999988
Q ss_pred EEEEecCCCCCCC
Q 040922 473 LSLSVERNPNFCL 485 (525)
Q Consensus 473 l~L~l~~N~~~C~ 485 (525)
|+++ +|+..|.
T Consensus 145 L~l~--~N~l~~~ 155 (198)
T 1ds9_A 145 LLLA--GNPLYND 155 (198)
T ss_dssp EEEC--SCHHHHH
T ss_pred EEec--CCccccc
Confidence 7654 7776443
No 129
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=97.80 E-value=8.2e-06 Score=83.23 Aligned_cols=84 Identities=27% Similarity=0.320 Sum_probs=64.9
Q ss_pred ceEEecCCCCCccCCCchhhccC-----CCcCEEEcCCCCCCCcCchhccC----C-CCCCEEeCCCCcCCCCCChhhhc
Q 040922 397 RIISLNLSSSGISGEIDPYIFSL-----TSIESLDLSNNSLTGLVPDFLAE----L-ESLTVLNLSGNNLQGSLPAGLVE 466 (525)
Q Consensus 397 ~L~~L~Ls~n~l~g~ip~~~~~L-----~~L~~L~Ls~N~l~g~iP~~l~~----l-~~L~~L~Ls~N~L~g~iP~~l~~ 466 (525)
+|+.|+|++|++++..+..+..+ ++|+.|+|++|++.+..+..+.. + ++|+.|+|++|++++..+..+..
T Consensus 52 ~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~ 131 (362)
T 3goz_A 52 SVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQ 131 (362)
T ss_dssp TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHH
T ss_pred ceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHH
Confidence 79999999999998878777775 89999999999999877775444 4 89999999999998766655543
Q ss_pred -----CCCCcEEEEEecCCCC
Q 040922 467 -----KANNRSLSLSVERNPN 482 (525)
Q Consensus 467 -----l~~l~~l~L~l~~N~~ 482 (525)
..+|+.|++ ++|..
T Consensus 132 ~l~~~~~~L~~L~L--s~N~l 150 (362)
T 3goz_A 132 AFSNLPASITSLNL--RGNDL 150 (362)
T ss_dssp HHTTSCTTCCEEEC--TTSCG
T ss_pred HHHhCCCceeEEEc--cCCcC
Confidence 247777654 46643
No 130
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=97.78 E-value=5.3e-06 Score=83.19 Aligned_cols=85 Identities=32% Similarity=0.364 Sum_probs=69.9
Q ss_pred CCceEEecCCCC-CccCC-CchhhccCCCcCEEEcCCC-CCCCc-CchhccCCC-CCCEEeCCCC--cCC-CCCChhhhc
Q 040922 395 PPRIISLNLSSS-GISGE-IDPYIFSLTSIESLDLSNN-SLTGL-VPDFLAELE-SLTVLNLSGN--NLQ-GSLPAGLVE 466 (525)
Q Consensus 395 ~~~L~~L~Ls~n-~l~g~-ip~~~~~L~~L~~L~Ls~N-~l~g~-iP~~l~~l~-~L~~L~Ls~N--~L~-g~iP~~l~~ 466 (525)
+++|+.|+|++| .+++. ++..+..+++|+.|+|++| .+++. ++..+..++ +|++|+|++| .++ +.+|..+.+
T Consensus 141 ~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~ 220 (336)
T 2ast_B 141 NSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRR 220 (336)
T ss_dssp CTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHH
T ss_pred CCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhh
Confidence 578999999999 68763 6777889999999999999 88865 688888899 9999999999 565 567888888
Q ss_pred CCCCcEEEEEecCCC
Q 040922 467 KANNRSLSLSVERNP 481 (525)
Q Consensus 467 l~~l~~l~L~l~~N~ 481 (525)
+++|+.|+++ +|.
T Consensus 221 ~~~L~~L~l~--~~~ 233 (336)
T 2ast_B 221 CPNLVHLDLS--DSV 233 (336)
T ss_dssp CTTCSEEECT--TCT
T ss_pred CCCCCEEeCC--CCC
Confidence 8899887654 554
No 131
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=97.76 E-value=1.3e-05 Score=81.75 Aligned_cols=85 Identities=29% Similarity=0.277 Sum_probs=65.4
Q ss_pred CceEEecCCCCCccCCCchhhcc----C-CCcCEEEcCCCCCCCcCchhcc----C-CCCCCEEeCCCCcCCCCCCh---
Q 040922 396 PRIISLNLSSSGISGEIDPYIFS----L-TSIESLDLSNNSLTGLVPDFLA----E-LESLTVLNLSGNNLQGSLPA--- 462 (525)
Q Consensus 396 ~~L~~L~Ls~n~l~g~ip~~~~~----L-~~L~~L~Ls~N~l~g~iP~~l~----~-l~~L~~L~Ls~N~L~g~iP~--- 462 (525)
++|+.|+|++|++++..+..+.. + ++|+.|+|++|++.+..+..+. . .++|++|+|++|++++..+.
T Consensus 80 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~ 159 (362)
T 3goz_A 80 ANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELI 159 (362)
T ss_dssp TTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHH
T ss_pred CCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHH
Confidence 68999999999999877765554 3 8999999999999987776654 3 36999999999999964444
Q ss_pred -hhhcCC-CCcEEEEEecCCCC
Q 040922 463 -GLVEKA-NNRSLSLSVERNPN 482 (525)
Q Consensus 463 -~l~~l~-~l~~l~L~l~~N~~ 482 (525)
.+..+. +|+.|++ .+|..
T Consensus 160 ~~l~~~~~~L~~L~L--s~n~l 179 (362)
T 3goz_A 160 QILAAIPANVNSLNL--RGNNL 179 (362)
T ss_dssp HHHHTSCTTCCEEEC--TTSCG
T ss_pred HHHhcCCccccEeee--cCCCC
Confidence 445554 7887665 46643
No 132
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=97.74 E-value=3.5e-05 Score=81.36 Aligned_cols=74 Identities=26% Similarity=0.265 Sum_probs=63.4
Q ss_pred CCCceEEecCCCCCccCCCchhhccCCCcCEEEcCCCCCCCcCchhccCCCCCCEEeCCCCcCCCCCChhhhcCCCCcEE
Q 040922 394 QPPRIISLNLSSSGISGEIDPYIFSLTSIESLDLSNNSLTGLVPDFLAELESLTVLNLSGNNLQGSLPAGLVEKANNRSL 473 (525)
Q Consensus 394 ~~~~L~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~L~g~iP~~l~~l~~l~~l 473 (525)
.+++|+.|+|++|++++. | +..+++|+.|+|++|++++. | ++.+++|++|+|++|++++ +| +..+.+|+.|
T Consensus 62 ~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L 132 (457)
T 3bz5_A 62 KLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLNCDTNKLTK-LD--VSQNPLLTYL 132 (457)
T ss_dssp GCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEECCSSCCSC-CC--CTTCTTCCEE
T ss_pred ccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCCcCCEEECCCCcCCe-ec--CCCCCcCCEE
Confidence 457899999999999964 4 88999999999999999974 4 8899999999999999996 55 7888888887
Q ss_pred EEE
Q 040922 474 SLS 476 (525)
Q Consensus 474 ~L~ 476 (525)
+++
T Consensus 133 ~l~ 135 (457)
T 3bz5_A 133 NCA 135 (457)
T ss_dssp ECT
T ss_pred ECC
Confidence 654
No 133
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.73 E-value=1.2e-05 Score=78.64 Aligned_cols=80 Identities=25% Similarity=0.328 Sum_probs=58.7
Q ss_pred ecCCCCCcc---CCCchhhccCCCcCEEEcCCCCCCC--cCchhccCCCCCCEEeCCCCcCCCCCChhhhcCC--CCcEE
Q 040922 401 LNLSSSGIS---GEIDPYIFSLTSIESLDLSNNSLTG--LVPDFLAELESLTVLNLSGNNLQGSLPAGLVEKA--NNRSL 473 (525)
Q Consensus 401 L~Ls~n~l~---g~ip~~~~~L~~L~~L~Ls~N~l~g--~iP~~l~~l~~L~~L~Ls~N~L~g~iP~~l~~l~--~l~~l 473 (525)
++++.|+.. +.++....++++|+.|+|++|+|++ .+|..++.+++|+.|+|++|+|++. ..+..+. +|+.
T Consensus 148 l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~- 224 (267)
T 3rw6_A 148 IDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEE- 224 (267)
T ss_dssp CCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSE-
T ss_pred ccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcce-
Confidence 556666433 2223333578999999999999998 5678888999999999999999965 4455555 5655
Q ss_pred EEEecCCCCCCC
Q 040922 474 SLSVERNPNFCL 485 (525)
Q Consensus 474 ~L~l~~N~~~C~ 485 (525)
|.+.+|| +|+
T Consensus 225 -L~L~~Np-l~~ 234 (267)
T 3rw6_A 225 -LWLDGNS-LCD 234 (267)
T ss_dssp -EECTTST-TGG
T ss_pred -EEccCCc-Ccc
Confidence 5567898 453
No 134
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=97.72 E-value=1.5e-05 Score=81.73 Aligned_cols=86 Identities=23% Similarity=0.261 Sum_probs=65.1
Q ss_pred CCceEEecCCCC---CccCCCchhh-------ccCCCcCEEEcCCCCCCC----cCchhccCCCCCCEEeCCCCcCCCCC
Q 040922 395 PPRIISLNLSSS---GISGEIDPYI-------FSLTSIESLDLSNNSLTG----LVPDFLAELESLTVLNLSGNNLQGSL 460 (525)
Q Consensus 395 ~~~L~~L~Ls~n---~l~g~ip~~~-------~~L~~L~~L~Ls~N~l~g----~iP~~l~~l~~L~~L~Ls~N~L~g~i 460 (525)
.++|+.|+|++| ++++.+|..+ ..+++|+.|+|++|.+.+ .+|..+..+++|++|+|++|.+++..
T Consensus 59 ~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~ 138 (386)
T 2ca6_A 59 KKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQA 138 (386)
T ss_dssp CTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHH
T ss_pred CCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHH
Confidence 468899999885 5566677665 688999999999999987 57888889999999999999997544
Q ss_pred Chhhh----cC---------CCCcEEEEEecCCCC
Q 040922 461 PAGLV----EK---------ANNRSLSLSVERNPN 482 (525)
Q Consensus 461 P~~l~----~l---------~~l~~l~L~l~~N~~ 482 (525)
+..+. .+ .+|+.|+++ +|..
T Consensus 139 ~~~l~~~l~~l~~~~~~~~~~~L~~L~L~--~n~l 171 (386)
T 2ca6_A 139 GAKIARALQELAVNKKAKNAPPLRSIICG--RNRL 171 (386)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCCCCEEECC--SSCC
T ss_pred HHHHHHHHHHHhhhhhcccCCCCcEEECC--CCCC
Confidence 44443 33 778876654 5543
No 135
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=97.71 E-value=3.2e-05 Score=81.63 Aligned_cols=64 Identities=25% Similarity=0.348 Sum_probs=35.5
Q ss_pred CceEEecCCCCCccCCCchhhccCCCcCEEEcCCCCCCCcCchhccCCCCCCEEeCCCCcCCC--CCChhhhcC
Q 040922 396 PRIISLNLSSSGISGEIDPYIFSLTSIESLDLSNNSLTGLVPDFLAELESLTVLNLSGNNLQG--SLPAGLVEK 467 (525)
Q Consensus 396 ~~L~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~L~g--~iP~~l~~l 467 (525)
++|+.|++++|++++ +|.. +++|+.|++++|+++ .+|. .+++|+.|+|++|++++ .+|.++..+
T Consensus 317 ~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L 382 (454)
T 1jl5_A 317 PSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLA-EVPE---LPQNLKQLHVEYNPLREFPDIPESVEDL 382 (454)
T ss_dssp TTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSSCCCCCTTCCEE
T ss_pred CcCCEEECCCCcccc-cccc---CCcCCEEECCCCccc-cccc---hhhhccEEECCCCCCCcCCCChHHHHhh
Confidence 355666666666653 4432 355666666666665 3444 34556666666666665 555555544
No 136
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=97.70 E-value=4.5e-05 Score=80.48 Aligned_cols=58 Identities=21% Similarity=0.305 Sum_probs=30.5
Q ss_pred CCceEEecCCCCCccCCCchhhccCCCcCEEEcCCCCCCCcCchhccCCCCCCEEeCCCCcCCC
Q 040922 395 PPRIISLNLSSSGISGEIDPYIFSLTSIESLDLSNNSLTGLVPDFLAELESLTVLNLSGNNLQG 458 (525)
Q Consensus 395 ~~~L~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~L~g 458 (525)
+++|+.|++++|++++ +|..+ .+|+.|++++|++.+ +| .++.+++|+.|++++|++++
T Consensus 152 l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~ 209 (454)
T 1jl5_A 152 SSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK 209 (454)
T ss_dssp CTTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS
T ss_pred CCCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc
Confidence 3455555555555553 33322 355555555555554 34 35556666666666666653
No 137
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=97.50 E-value=2.4e-05 Score=81.95 Aligned_cols=85 Identities=26% Similarity=0.224 Sum_probs=60.7
Q ss_pred CceEEecCCCCCccCC----CchhhccCCCcCEEEcCCCCCCCcCchhccC-----CCCCCEEeCCCCcCCC----CCCh
Q 040922 396 PRIISLNLSSSGISGE----IDPYIFSLTSIESLDLSNNSLTGLVPDFLAE-----LESLTVLNLSGNNLQG----SLPA 462 (525)
Q Consensus 396 ~~L~~L~Ls~n~l~g~----ip~~~~~L~~L~~L~Ls~N~l~g~iP~~l~~-----l~~L~~L~Ls~N~L~g----~iP~ 462 (525)
++|+.|+|++|.+++. ++..+..+++|+.|+|++|.+.+..+..+.. .++|+.|+|++|++++ .+|.
T Consensus 313 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~ 392 (461)
T 1z7x_W 313 CQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAA 392 (461)
T ss_dssp CCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHH
T ss_pred ccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHH
Confidence 4778888888887754 4566677788888888888887655544442 5688888888888875 6777
Q ss_pred hhhcCCCCcEEEEEecCCCC
Q 040922 463 GLVEKANNRSLSLSVERNPN 482 (525)
Q Consensus 463 ~l~~l~~l~~l~L~l~~N~~ 482 (525)
.+..+.+|+.|+++ +|+.
T Consensus 393 ~l~~~~~L~~L~l~--~N~i 410 (461)
T 1z7x_W 393 TLLANHSLRELDLS--NNCL 410 (461)
T ss_dssp HHHHCCCCCEEECC--SSSC
T ss_pred HHHhCCCccEEECC--CCCC
Confidence 77777777776543 5543
No 138
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=97.48 E-value=6.2e-05 Score=82.62 Aligned_cols=70 Identities=29% Similarity=0.349 Sum_probs=62.3
Q ss_pred CCCceEEecCCCCCccCCCchhhccCCCcCEEEcCCCCCCCcCchhccCCCCCCEEeCCCCcCCCCCChhhhcCC
Q 040922 394 QPPRIISLNLSSSGISGEIDPYIFSLTSIESLDLSNNSLTGLVPDFLAELESLTVLNLSGNNLQGSLPAGLVEKA 468 (525)
Q Consensus 394 ~~~~L~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~L~g~iP~~l~~l~ 468 (525)
.+++|+.|+|++|+|+ .+|. .+++|+.|+|++|+|+ .+|..+..+++|+.|+|++|.++|.+|..+.++.
T Consensus 239 ~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L~ 308 (622)
T 3g06_A 239 LPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREIT 308 (622)
T ss_dssp CCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHHH
T ss_pred CCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHhcc
Confidence 3468999999999999 6776 6789999999999999 8899999999999999999999999998876543
No 139
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=97.42 E-value=9.8e-05 Score=74.81 Aligned_cols=81 Identities=14% Similarity=0.139 Sum_probs=59.6
Q ss_pred CCCceEEecCCCCCccCCCch-hhccCCCcCE-EEcCCCCCCCcCchhccCCCCCCEEeCCCCcCCCCCChhhhcCCCCc
Q 040922 394 QPPRIISLNLSSSGISGEIDP-YIFSLTSIES-LDLSNNSLTGLVPDFLAELESLTVLNLSGNNLQGSLPAGLVEKANNR 471 (525)
Q Consensus 394 ~~~~L~~L~Ls~n~l~g~ip~-~~~~L~~L~~-L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~L~g~iP~~l~~l~~l~ 471 (525)
.+++|+.|+|++|++.+.+|. .|.+|++|+. +.+++|++....|..|..+++|++|++++|++++..+..+....++.
T Consensus 52 ~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~ 131 (350)
T 4ay9_X 52 GFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKV 131 (350)
T ss_dssp TCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCE
T ss_pred CCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccccccccccccCCchhhcccchhh
Confidence 356889999999998766665 4778888764 66778899888888889999999999999999855444444444443
Q ss_pred EEE
Q 040922 472 SLS 474 (525)
Q Consensus 472 ~l~ 474 (525)
.++
T Consensus 132 ~l~ 134 (350)
T 4ay9_X 132 LLD 134 (350)
T ss_dssp EEE
T ss_pred hhh
Confidence 433
No 140
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.40 E-value=0.00021 Score=61.95 Aligned_cols=40 Identities=35% Similarity=0.393 Sum_probs=22.5
Q ss_pred CCCEEeCCCCcCCCCCCh-hhhcCCCCcEEEEEecCCCCCCCCC
Q 040922 445 SLTVLNLSGNNLQGSLPA-GLVEKANNRSLSLSVERNPNFCLSD 487 (525)
Q Consensus 445 ~L~~L~Ls~N~L~g~iP~-~l~~l~~l~~l~L~l~~N~~~C~~~ 487 (525)
+|+.|+|++|+|+ .+|. .+..+.+|+.| .+.+|||.|+|.
T Consensus 32 ~l~~L~Ls~N~l~-~l~~~~f~~l~~L~~L--~L~~NP~~CdC~ 72 (130)
T 3rfe_A 32 DTTELVLTGNNLT-ALPPGLLDALPALRTA--HLGANPWRCDCR 72 (130)
T ss_dssp TCSEEECTTSCCS-SCCTTTGGGCTTCCEE--ECCSSCCBCSGG
T ss_pred CCCEEECCCCcCC-ccChhhhhhccccCEE--EecCCCeeccCc
Confidence 4555666666665 3333 34455555543 455788888773
No 141
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=97.14 E-value=7.8e-05 Score=77.95 Aligned_cols=80 Identities=24% Similarity=0.226 Sum_probs=47.7
Q ss_pred CceEEecCCCCCccCCCchhhccC-----CCcCEEEcCCCCCCCc----CchhccCCCCCCEEeCCCCcCCCCCChhhhc
Q 040922 396 PRIISLNLSSSGISGEIDPYIFSL-----TSIESLDLSNNSLTGL----VPDFLAELESLTVLNLSGNNLQGSLPAGLVE 466 (525)
Q Consensus 396 ~~L~~L~Ls~n~l~g~ip~~~~~L-----~~L~~L~Ls~N~l~g~----iP~~l~~l~~L~~L~Ls~N~L~g~iP~~l~~ 466 (525)
++|+.|+|++|.+++..+..+... ++|+.|+|++|.+++. ++..+..+++|+.|+|++|++++..+..+..
T Consensus 284 ~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~ 363 (461)
T 1z7x_W 284 ESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQ 363 (461)
T ss_dssp TTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHH
T ss_pred CCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHH
Confidence 456677777776654433333322 4677777777776654 4555666677777777777776554544432
Q ss_pred -----CCCCcEEEE
Q 040922 467 -----KANNRSLSL 475 (525)
Q Consensus 467 -----l~~l~~l~L 475 (525)
..+|+.|++
T Consensus 364 ~l~~~~~~L~~L~L 377 (461)
T 1z7x_W 364 GLGQPGSVLRVLWL 377 (461)
T ss_dssp HHTSTTCCCCEEEC
T ss_pred HHcCCCCceEEEEC
Confidence 445665544
No 142
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=96.97 E-value=0.00019 Score=73.72 Aligned_cols=84 Identities=23% Similarity=0.186 Sum_probs=51.7
Q ss_pred CceEEecCCCCCccC----CCchhhccCCCcCEEEcCCCCCCCc----CchhccCCCCCCEEeCCCCcCCCC----CChh
Q 040922 396 PRIISLNLSSSGISG----EIDPYIFSLTSIESLDLSNNSLTGL----VPDFLAELESLTVLNLSGNNLQGS----LPAG 463 (525)
Q Consensus 396 ~~L~~L~Ls~n~l~g----~ip~~~~~L~~L~~L~Ls~N~l~g~----iP~~l~~l~~L~~L~Ls~N~L~g~----iP~~ 463 (525)
+.|+.|+|++|.|+. .++..+..+++|+.|+|++|.+... ++..+...++|+.|+|++|.++.. ++..
T Consensus 155 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~ 234 (372)
T 3un9_A 155 CQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARA 234 (372)
T ss_dssp CCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHH
T ss_pred CccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHH
Confidence 357777777777753 2334446677777777777777632 345566667777777777777642 3334
Q ss_pred hhcCCCCcEEEEEecCCC
Q 040922 464 LVEKANNRSLSLSVERNP 481 (525)
Q Consensus 464 l~~l~~l~~l~L~l~~N~ 481 (525)
+....+|+.|+| ++|+
T Consensus 235 L~~~~~L~~L~L--s~N~ 250 (372)
T 3un9_A 235 AREHPSLELLHL--YFNE 250 (372)
T ss_dssp HHHCSSCCEEEC--TTSS
T ss_pred HHhCCCCCEEec--cCCC
Confidence 445566666544 3554
No 143
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=96.83 E-value=0.00037 Score=75.24 Aligned_cols=80 Identities=16% Similarity=0.135 Sum_probs=45.0
Q ss_pred CceEEecCCCCCccCC----CchhhccCCCcCEEEcCCCCCC----CcCchhccCCCCCCEEeCCCCcCCCCCChhhhcC
Q 040922 396 PRIISLNLSSSGISGE----IDPYIFSLTSIESLDLSNNSLT----GLVPDFLAELESLTVLNLSGNNLQGSLPAGLVEK 467 (525)
Q Consensus 396 ~~L~~L~Ls~n~l~g~----ip~~~~~L~~L~~L~Ls~N~l~----g~iP~~l~~l~~L~~L~Ls~N~L~g~iP~~l~~l 467 (525)
++|+.|+|++|.+++. ++..+..+++|+.|+|++|.++ +.++..+..+++|+.|+|++|.+.+ +|..+.++
T Consensus 164 ~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~ 242 (592)
T 3ogk_B 164 RKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAA 242 (592)
T ss_dssp TTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHC
T ss_pred CCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhh
Confidence 4566666666665544 3334445566666666666665 2333444556666666666666653 55555555
Q ss_pred CCCcEEEEE
Q 040922 468 ANNRSLSLS 476 (525)
Q Consensus 468 ~~l~~l~L~ 476 (525)
.+|+.|.+.
T Consensus 243 ~~L~~L~l~ 251 (592)
T 3ogk_B 243 ANLEEFCGG 251 (592)
T ss_dssp TTCCEEEEC
T ss_pred hHHHhhccc
Confidence 666555553
No 144
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=96.77 E-value=0.00043 Score=63.57 Aligned_cols=80 Identities=13% Similarity=0.196 Sum_probs=46.2
Q ss_pred CceEEecCCCCCccCC----CchhhccCCCcCEEEcCCCCCCCc----CchhccCCCCCCEEeC--CCCcCCCC----CC
Q 040922 396 PRIISLNLSSSGISGE----IDPYIFSLTSIESLDLSNNSLTGL----VPDFLAELESLTVLNL--SGNNLQGS----LP 461 (525)
Q Consensus 396 ~~L~~L~Ls~n~l~g~----ip~~~~~L~~L~~L~Ls~N~l~g~----iP~~l~~l~~L~~L~L--s~N~L~g~----iP 461 (525)
+.|+.|+|++|.+... +...+...++|+.|+|++|.+... +...+...++|++|+| ++|.++.. +.
T Consensus 65 ~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~ 144 (185)
T 1io0_A 65 TYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIA 144 (185)
T ss_dssp CSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHH
T ss_pred CCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHH
Confidence 4567777777776532 233344456677777777776642 3445556667777777 66776633 22
Q ss_pred hhhhcCCCCcEEEE
Q 040922 462 AGLVEKANNRSLSL 475 (525)
Q Consensus 462 ~~l~~l~~l~~l~L 475 (525)
..+....+|+.|+|
T Consensus 145 ~~L~~n~~L~~L~L 158 (185)
T 1io0_A 145 NMLEKNTTLLKFGY 158 (185)
T ss_dssp HHHHHCSSCCEEEC
T ss_pred HHHHhCCCcCEEec
Confidence 33344455666554
No 145
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=96.54 E-value=0.00056 Score=73.80 Aligned_cols=81 Identities=14% Similarity=0.131 Sum_probs=42.5
Q ss_pred CceEEecCCCC--CccCCCchhhcc-CCCcCEEEcCCCCCCC-cCchhccCCCCCCEEeCCCCcCCCC-CChhhhcCCCC
Q 040922 396 PRIISLNLSSS--GISGEIDPYIFS-LTSIESLDLSNNSLTG-LVPDFLAELESLTVLNLSGNNLQGS-LPAGLVEKANN 470 (525)
Q Consensus 396 ~~L~~L~Ls~n--~l~g~ip~~~~~-L~~L~~L~Ls~N~l~g-~iP~~l~~l~~L~~L~Ls~N~L~g~-iP~~l~~l~~l 470 (525)
++|+.|+|+.+ .+++..+..+.. +++|+.|+|++|++++ .++..+..+++|+.|+|++|.+++. ++..+..+++|
T Consensus 436 ~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L 515 (592)
T 3ogk_B 436 KKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSL 515 (592)
T ss_dssp TTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSC
T ss_pred CCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCcc
Confidence 45566666432 244433333332 5566666666666654 3444455666666666666665533 23333455566
Q ss_pred cEEEEE
Q 040922 471 RSLSLS 476 (525)
Q Consensus 471 ~~l~L~ 476 (525)
+.|+++
T Consensus 516 ~~L~ls 521 (592)
T 3ogk_B 516 RYLWVQ 521 (592)
T ss_dssp CEEEEE
T ss_pred CeeECc
Confidence 655544
No 146
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=96.54 E-value=0.0007 Score=69.38 Aligned_cols=81 Identities=28% Similarity=0.275 Sum_probs=59.5
Q ss_pred CceEEecCCCCCccCCCchhh-----ccCCCcCEEEcCCCCCCC----cCchhccCCCCCCEEeCCCCcCCCC----CCh
Q 040922 396 PRIISLNLSSSGISGEIDPYI-----FSLTSIESLDLSNNSLTG----LVPDFLAELESLTVLNLSGNNLQGS----LPA 462 (525)
Q Consensus 396 ~~L~~L~Ls~n~l~g~ip~~~-----~~L~~L~~L~Ls~N~l~g----~iP~~l~~l~~L~~L~Ls~N~L~g~----iP~ 462 (525)
++|+.|+|++|+++......+ ....+|+.|+|++|.+.. .++..+..+++|++|+|++|+++.. ++.
T Consensus 126 ~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~ 205 (372)
T 3un9_A 126 LRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAA 205 (372)
T ss_dssp HTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHH
T ss_pred HhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHH
Confidence 468899999998875444443 245789999999999864 3555667889999999999998742 345
Q ss_pred hhhcCCCCcEEEEE
Q 040922 463 GLVEKANNRSLSLS 476 (525)
Q Consensus 463 ~l~~l~~l~~l~L~ 476 (525)
.+....+|+.|+|+
T Consensus 206 ~L~~~~~L~~L~Ls 219 (372)
T 3un9_A 206 QLDRNRQLQELNVA 219 (372)
T ss_dssp HGGGCSCCCEEECC
T ss_pred HHhcCCCcCeEECC
Confidence 56667778877654
No 147
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=96.48 E-value=0.00087 Score=61.47 Aligned_cols=86 Identities=19% Similarity=0.268 Sum_probs=60.1
Q ss_pred CceEEecCCCC-CccCC----CchhhccCCCcCEEEcCCCCCCCc----CchhccCCCCCCEEeCCCCcCCCC----CCh
Q 040922 396 PRIISLNLSSS-GISGE----IDPYIFSLTSIESLDLSNNSLTGL----VPDFLAELESLTVLNLSGNNLQGS----LPA 462 (525)
Q Consensus 396 ~~L~~L~Ls~n-~l~g~----ip~~~~~L~~L~~L~Ls~N~l~g~----iP~~l~~l~~L~~L~Ls~N~L~g~----iP~ 462 (525)
+.|+.|+|++| .+... +...+...++|+.|+|++|.+... +...+...++|++|+|++|.++.. +..
T Consensus 36 ~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~ 115 (185)
T 1io0_A 36 PDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVE 115 (185)
T ss_dssp TTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHH
T ss_pred CCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHH
Confidence 47888999988 77632 344566678899999999988642 344556668899999999988743 345
Q ss_pred hhhcCCCCcEEEEEecCCC
Q 040922 463 GLVEKANNRSLSLSVERNP 481 (525)
Q Consensus 463 ~l~~l~~l~~l~L~l~~N~ 481 (525)
.+.....|+.|+|+..+|.
T Consensus 116 ~L~~n~~L~~L~L~~~~N~ 134 (185)
T 1io0_A 116 ALQSNTSLIELRIDNQSQP 134 (185)
T ss_dssp GGGGCSSCCEEECCCCSSC
T ss_pred HHHhCCCceEEEecCCCCC
Confidence 5666667888776434554
No 148
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=96.41 E-value=0.0034 Score=62.72 Aligned_cols=78 Identities=17% Similarity=0.198 Sum_probs=55.1
Q ss_pred CceEEecCCCCCccCCCchhhccCCCcCEEEcCCCCCCCcCchhccCCCCCC-EEeCCCCcCCCCCChhhhcCCCCcEEE
Q 040922 396 PRIISLNLSSSGISGEIDPYIFSLTSIESLDLSNNSLTGLVPDFLAELESLT-VLNLSGNNLQGSLPAGLVEKANNRSLS 474 (525)
Q Consensus 396 ~~L~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~g~iP~~l~~l~~L~-~L~Ls~N~L~g~iP~~l~~l~~l~~l~ 474 (525)
++|+.|+|++|+++..-+..|..+.+|+.|+|++| +...-+..|.++++|+ .|+|++ +++..-+..+.++.+|+.++
T Consensus 226 ~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~ 303 (329)
T 3sb4_A 226 PNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVL 303 (329)
T ss_dssp TTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEE
T ss_pred CCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEE
Confidence 46778888888777444455788888888888887 6656667788888888 888877 66633345566777777766
Q ss_pred E
Q 040922 475 L 475 (525)
Q Consensus 475 L 475 (525)
+
T Consensus 304 l 304 (329)
T 3sb4_A 304 A 304 (329)
T ss_dssp E
T ss_pred e
Confidence 4
No 149
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.37 E-value=0.0053 Score=52.97 Aligned_cols=56 Identities=23% Similarity=0.361 Sum_probs=44.3
Q ss_pred EecCCCCCcc-CCCchhhccCCCcCEEEcCCCCCCCcCchhccCCCCCCEEeCCCCcCC
Q 040922 400 SLNLSSSGIS-GEIDPYIFSLTSIESLDLSNNSLTGLVPDFLAELESLTVLNLSGNNLQ 457 (525)
Q Consensus 400 ~L~Ls~n~l~-g~ip~~~~~L~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~L~ 457 (525)
.++.++++|+ ..+|..+. .+|+.|+|++|+|+...+..|..+++|+.|+|++|.+.
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 5777777776 35665433 46899999999999777778899999999999999885
No 150
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=96.07 E-value=0.0011 Score=71.34 Aligned_cols=80 Identities=19% Similarity=0.168 Sum_probs=38.9
Q ss_pred CceEEecCCCCCccCCCchhhcc-CCCcCEEEcCCCCCCCcCchhc-cCCCCCCEEeCCCCcCCCCCChh-hhcCCCCcE
Q 040922 396 PRIISLNLSSSGISGEIDPYIFS-LTSIESLDLSNNSLTGLVPDFL-AELESLTVLNLSGNNLQGSLPAG-LVEKANNRS 472 (525)
Q Consensus 396 ~~L~~L~Ls~n~l~g~ip~~~~~-L~~L~~L~Ls~N~l~g~iP~~l-~~l~~L~~L~Ls~N~L~g~iP~~-l~~l~~l~~ 472 (525)
++|+.|+|++ .+++..+..+.. +++|+.|+|++|.+++..+..+ ..+++|+.|+|++|.+++..+.. +..+.+|+.
T Consensus 432 ~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~ 510 (594)
T 2p1m_B 432 KDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRS 510 (594)
T ss_dssp TTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSE
T ss_pred CCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCE
Confidence 3455555554 444333334433 5556666666665554333333 44556666666666554332222 223445555
Q ss_pred EEEE
Q 040922 473 LSLS 476 (525)
Q Consensus 473 l~L~ 476 (525)
|+++
T Consensus 511 L~l~ 514 (594)
T 2p1m_B 511 LWMS 514 (594)
T ss_dssp EEEE
T ss_pred Eeee
Confidence 5443
No 151
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=96.00 E-value=0.006 Score=60.85 Aligned_cols=78 Identities=9% Similarity=0.098 Sum_probs=64.9
Q ss_pred CCceEEecCCCCCccCCCchhhccCCCcC-EEEcCCCCCCCcCchhccCCCCCCEEeCCCCcCCCCCChhhhcCCCCcEE
Q 040922 395 PPRIISLNLSSSGISGEIDPYIFSLTSIE-SLDLSNNSLTGLVPDFLAELESLTVLNLSGNNLQGSLPAGLVEKANNRSL 473 (525)
Q Consensus 395 ~~~L~~L~Ls~n~l~g~ip~~~~~L~~L~-~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~L~g~iP~~l~~l~~l~~l 473 (525)
..+|+.|+|++| ++..-+..|.++.+|+ .|++.+ +++..-+..|.++++|+.|+|++|+++..-+..+.++.+|+.+
T Consensus 249 ~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~l 326 (329)
T 3sb4_A 249 KKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLI 326 (329)
T ss_dssp CTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEE
T ss_pred CCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhh
Confidence 357999999998 7755566799999999 999999 7886778999999999999999999994444467778888876
Q ss_pred E
Q 040922 474 S 474 (525)
Q Consensus 474 ~ 474 (525)
.
T Consensus 327 y 327 (329)
T 3sb4_A 327 Y 327 (329)
T ss_dssp E
T ss_pred c
Confidence 4
No 152
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=95.88 E-value=0.003 Score=57.58 Aligned_cols=81 Identities=19% Similarity=0.122 Sum_probs=62.0
Q ss_pred CceEEecCCCCCccCCCchhhccCCCcCEEEcCCCC-CCCcCchhccCC----CCCCEEeCCCC-cCCCCCChhhhcCCC
Q 040922 396 PRIISLNLSSSGISGEIDPYIFSLTSIESLDLSNNS-LTGLVPDFLAEL----ESLTVLNLSGN-NLQGSLPAGLVEKAN 469 (525)
Q Consensus 396 ~~L~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~-l~g~iP~~l~~l----~~L~~L~Ls~N-~L~g~iP~~l~~l~~ 469 (525)
.+|+.|+|+++.++..--..+..+++|+.|+|+++. ++..-=..++.+ ++|++|+|+++ +++..--..+.++.+
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 479999999999886655668899999999999985 664333445554 47999999987 477433345678889
Q ss_pred CcEEEEE
Q 040922 470 NRSLSLS 476 (525)
Q Consensus 470 l~~l~L~ 476 (525)
|+.|+++
T Consensus 141 L~~L~L~ 147 (176)
T 3e4g_A 141 LKYLFLS 147 (176)
T ss_dssp CCEEEEE
T ss_pred CCEEECC
Confidence 9998887
No 153
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=95.48 E-value=0.0025 Score=68.60 Aligned_cols=79 Identities=24% Similarity=0.323 Sum_probs=50.1
Q ss_pred CceEEecCCCC-CccCC-CchhhccCCCcCEEEcCCCCCCCcCchhcc----CCCCCCEEeCCCCcCCCCCCh-h----h
Q 040922 396 PRIISLNLSSS-GISGE-IDPYIFSLTSIESLDLSNNSLTGLVPDFLA----ELESLTVLNLSGNNLQGSLPA-G----L 464 (525)
Q Consensus 396 ~~L~~L~Ls~n-~l~g~-ip~~~~~L~~L~~L~Ls~N~l~g~iP~~l~----~l~~L~~L~Ls~N~L~g~iP~-~----l 464 (525)
++|+.|+|++| .++.. ++..+..+++|+.|+|++|.+++..+..+. .+++|+.|+|++|. +.+.. . .
T Consensus 130 ~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~--~~~~~~~l~~l~ 207 (594)
T 2p1m_B 130 KNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLA--SEVSFSALERLV 207 (594)
T ss_dssp TTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCC--SCCCHHHHHHHH
T ss_pred CCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccC--CcCCHHHHHHHH
Confidence 57788888877 44432 344445788888888888887765544443 56688888888776 23322 1 2
Q ss_pred hcCCCCcEEEEE
Q 040922 465 VEKANNRSLSLS 476 (525)
Q Consensus 465 ~~l~~l~~l~L~ 476 (525)
..+++|+.|+++
T Consensus 208 ~~~~~L~~L~L~ 219 (594)
T 2p1m_B 208 TRCPNLKSLKLN 219 (594)
T ss_dssp HHCTTCCEEECC
T ss_pred HhCCCCcEEecC
Confidence 345777776654
No 154
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=94.18 E-value=0.0082 Score=61.19 Aligned_cols=71 Identities=20% Similarity=0.300 Sum_probs=52.3
Q ss_pred CCceEEecCCCCCccCCCchhhc---cCCCcCEEEcCCCCCCCc----CchhccCCCCCCEEeCCCCcCCCCCChhhh
Q 040922 395 PPRIISLNLSSSGISGEIDPYIF---SLTSIESLDLSNNSLTGL----VPDFLAELESLTVLNLSGNNLQGSLPAGLV 465 (525)
Q Consensus 395 ~~~L~~L~Ls~n~l~g~ip~~~~---~L~~L~~L~Ls~N~l~g~----iP~~l~~l~~L~~L~Ls~N~L~g~iP~~l~ 465 (525)
.++|+.|+|++|.+....+..+. .+++|+.|+|+.|.+.+. ++..+..+++|+.|+|++|.++...-..+.
T Consensus 251 ~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~ 328 (362)
T 2ra8_A 251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQ 328 (362)
T ss_dssp CTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHH
T ss_pred CCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHH
Confidence 47899999999988754443333 578999999999999864 444455679999999999988743333333
No 155
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=90.99 E-value=0.19 Score=50.95 Aligned_cols=54 Identities=20% Similarity=0.309 Sum_probs=32.5
Q ss_pred CCceEEecCCCCC-ccCCCchhhccCCCcCEEEcCCCCCCCcCchhcc--CCCCCCEEeCC
Q 040922 395 PPRIISLNLSSSG-ISGEIDPYIFSLTSIESLDLSNNSLTGLVPDFLA--ELESLTVLNLS 452 (525)
Q Consensus 395 ~~~L~~L~Ls~n~-l~g~ip~~~~~L~~L~~L~Ls~N~l~g~iP~~l~--~l~~L~~L~Ls 452 (525)
+++|+.|+|++|. + .+++ + .+++|+.|+|..+.+....-..+. .+++|+.|+|+
T Consensus 171 ~P~L~~L~L~g~~~l--~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~ 227 (362)
T 2ra8_A 171 MPLLNNLKIKGTNNL--SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLY 227 (362)
T ss_dssp CTTCCEEEEECCBTC--BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEE
T ss_pred CCCCcEEEEeCCCCc--eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEe
Confidence 4577777777662 2 2232 3 367777777777766543333333 57777777774
No 156
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=88.46 E-value=0.46 Score=48.71 Aligned_cols=78 Identities=10% Similarity=0.155 Sum_probs=56.4
Q ss_pred CCceEEecCCCCCcc-----CCCchhhccCCCcCEEEcCCCCCCCcCchhccCCCCCCEEeCCCCcCCCCCC-hhhhcCC
Q 040922 395 PPRIISLNLSSSGIS-----GEIDPYIFSLTSIESLDLSNNSLTGLVPDFLAELESLTVLNLSGNNLQGSLP-AGLVEKA 468 (525)
Q Consensus 395 ~~~L~~L~Ls~n~l~-----g~ip~~~~~L~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~L~g~iP-~~l~~l~ 468 (525)
.++|+.+.+.+|.+. ..-+..|..+.+|+.++|.+ .+.-.-...|.++++|+.+.|..| ++ .|+ ..+.++
T Consensus 270 c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~-~I~~~aF~~~- 345 (401)
T 4fdw_A 270 CPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VT-QINFSAFNNT- 345 (401)
T ss_dssp CTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CC-EECTTSSSSS-
T ss_pred CCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-cc-EEcHHhCCCC-
Confidence 457888888877664 23445688899999999984 577566678889999999999655 65 444 445566
Q ss_pred CCcEEEEE
Q 040922 469 NNRSLSLS 476 (525)
Q Consensus 469 ~l~~l~L~ 476 (525)
+|+.+.+.
T Consensus 346 ~L~~l~l~ 353 (401)
T 4fdw_A 346 GIKEVKVE 353 (401)
T ss_dssp CCCEEEEC
T ss_pred CCCEEEEc
Confidence 78877665
No 157
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=88.13 E-value=0.22 Score=45.97 Aligned_cols=57 Identities=19% Similarity=0.190 Sum_probs=24.9
Q ss_pred ceEEecCCCCCccCC----CchhhccCCCcCEEEcCCCCCCCc----CchhccCCCCCCEEeCCC
Q 040922 397 RIISLNLSSSGISGE----IDPYIFSLTSIESLDLSNNSLTGL----VPDFLAELESLTVLNLSG 453 (525)
Q Consensus 397 ~L~~L~Ls~n~l~g~----ip~~~~~L~~L~~L~Ls~N~l~g~----iP~~l~~l~~L~~L~Ls~ 453 (525)
.|+.|+|++|+|... +-..+..=+.|+.|+|++|+|... +-..+..-+.|+.|+|++
T Consensus 71 ~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n 135 (197)
T 1pgv_A 71 HIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADN 135 (197)
T ss_dssp CCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCC
T ss_pred CcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCC
Confidence 455555555555421 122232334455555555555421 122233334455555554
No 158
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=87.28 E-value=0.32 Score=44.84 Aligned_cols=81 Identities=17% Similarity=0.224 Sum_probs=55.3
Q ss_pred CceEEecCCCC-CccC----CCchhhccCCCcCEEEcCCCCCCCc----CchhccCCCCCCEEeCCCCcCCCCCC----h
Q 040922 396 PRIISLNLSSS-GISG----EIDPYIFSLTSIESLDLSNNSLTGL----VPDFLAELESLTVLNLSGNNLQGSLP----A 462 (525)
Q Consensus 396 ~~L~~L~Ls~n-~l~g----~ip~~~~~L~~L~~L~Ls~N~l~g~----iP~~l~~l~~L~~L~Ls~N~L~g~iP----~ 462 (525)
+.|+.|+|++| +|.. .+-..+..=..|+.|+|++|++... +-..+..-+.|+.|+|++|+++..-- .
T Consensus 41 ~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~ 120 (197)
T 1pgv_A 41 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLR 120 (197)
T ss_dssp SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHH
T ss_pred CCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHH
Confidence 46889999985 7652 2334456667899999999999732 33445556899999999999974222 2
Q ss_pred hhhcCCCCcEEEEE
Q 040922 463 GLVEKANNRSLSLS 476 (525)
Q Consensus 463 ~l~~l~~l~~l~L~ 476 (525)
.+..-..|+.|+|+
T Consensus 121 aL~~N~tL~~L~L~ 134 (197)
T 1pgv_A 121 STLVTQSIVEFKAD 134 (197)
T ss_dssp HTTTTCCCSEEECC
T ss_pred HHhhCCceeEEECC
Confidence 33344457776654
No 159
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=87.17 E-value=0.91 Score=46.48 Aligned_cols=78 Identities=8% Similarity=0.085 Sum_probs=57.2
Q ss_pred CCceEEecCCCCCccCCCchhhccCCCcCEEEcCCCCCCCcCchhccCCCCCCEEeCCCCcCCCCCChhhhcCC-CCcEE
Q 040922 395 PPRIISLNLSSSGISGEIDPYIFSLTSIESLDLSNNSLTGLVPDFLAELESLTVLNLSGNNLQGSLPAGLVEKA-NNRSL 473 (525)
Q Consensus 395 ~~~L~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~L~g~iP~~l~~l~-~l~~l 473 (525)
.++|+.+.|.+ .++..-...|.++.+|+.|.|.+| +...-+..|..+ +|+.|++++|.+....+..+..+. +++.|
T Consensus 299 c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l 375 (401)
T 4fdw_A 299 CPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVI 375 (401)
T ss_dssp CTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEE
T ss_pred CccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEE
Confidence 35789999984 577455567999999999999665 775667889999 999999999988743334444443 34455
Q ss_pred EE
Q 040922 474 SL 475 (525)
Q Consensus 474 ~L 475 (525)
.+
T Consensus 376 ~v 377 (401)
T 4fdw_A 376 RV 377 (401)
T ss_dssp EE
T ss_pred Ee
Confidence 44
No 160
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=84.00 E-value=0.22 Score=33.99 Aligned_cols=15 Identities=7% Similarity=0.208 Sum_probs=6.3
Q ss_pred EEEEEehHHHHHHHH
Q 040922 496 FIVPVLASVVTFSVF 510 (525)
Q Consensus 496 ~~i~v~~~~~~~~~~ 510 (525)
+..+|+..+++++++
T Consensus 13 IA~gVVgGv~~~~ii 27 (44)
T 2ks1_B 13 IATGMVGALLLLLVV 27 (44)
T ss_dssp STHHHHHHHHHHHHH
T ss_pred EEeehhHHHHHHHHH
Confidence 444444444444333
No 161
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=82.61 E-value=0.54 Score=42.50 Aligned_cols=57 Identities=11% Similarity=0.197 Sum_probs=41.9
Q ss_pred CCcCEEEcCCCCCCCcCchhccCCCCCCEEeCCCCc-CCCCCChhhhcC----CCCcEEEEE
Q 040922 420 TSIESLDLSNNSLTGLVPDFLAELESLTVLNLSGNN-LQGSLPAGLVEK----ANNRSLSLS 476 (525)
Q Consensus 420 ~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~-L~g~iP~~l~~l----~~l~~l~L~ 476 (525)
..|+.|||+++.++..--..+..+++|++|+|+++. ++..--..+..+ .+|+.|+|+
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls 122 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEII 122 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEE
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcC
Confidence 479999999999875544567899999999999985 664333344443 257888776
No 162
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=79.68 E-value=2.6 Score=42.55 Aligned_cols=77 Identities=19% Similarity=0.159 Sum_probs=52.8
Q ss_pred CceEEecCCCCCccCCCchhhccCCCcCEEEcCCCCCCCcCchhccCCCCCCEEeCCCCcCCCCCCh-hhhcCCCCcEEE
Q 040922 396 PRIISLNLSSSGISGEIDPYIFSLTSIESLDLSNNSLTGLVPDFLAELESLTVLNLSGNNLQGSLPA-GLVEKANNRSLS 474 (525)
Q Consensus 396 ~~L~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~L~g~iP~-~l~~l~~l~~l~ 474 (525)
..|+.+.+..+ ++..-...|.++.+|+.++|.++ ++-.-...|.++.+|+.+.|..| ++ .|+. .+.+..+|+.++
T Consensus 297 ~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~C~~L~~i~ 372 (394)
T 4fs7_A 297 SSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LR-KIGANAFQGCINLKKVE 372 (394)
T ss_dssp TTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CC-EECTTTBTTCTTCCEEE
T ss_pred ccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-cc-EehHHHhhCCCCCCEEE
Confidence 45667776544 54333456888888998888754 66455677888889999888766 65 4443 456677788777
Q ss_pred EE
Q 040922 475 LS 476 (525)
Q Consensus 475 L~ 476 (525)
+.
T Consensus 373 lp 374 (394)
T 4fs7_A 373 LP 374 (394)
T ss_dssp EE
T ss_pred EC
Confidence 64
No 163
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=73.48 E-value=6.9 Score=39.31 Aligned_cols=77 Identities=18% Similarity=0.336 Sum_probs=48.7
Q ss_pred CceEEecCCCCCccCCCchhhccCCCcCEEEcCCCCCCCcCchhccCCCCCCEEeCCCCcCCCCCCh-hhhcCCCCcEEE
Q 040922 396 PRIISLNLSSSGISGEIDPYIFSLTSIESLDLSNNSLTGLVPDFLAELESLTVLNLSGNNLQGSLPA-GLVEKANNRSLS 474 (525)
Q Consensus 396 ~~L~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~L~g~iP~-~l~~l~~l~~l~ 474 (525)
..|+.+.+. +.++..-...|.++.+|+.++|..+ ++..-...|.++.+|+.+.|..+ ++ .|.. .+.+..+|+.++
T Consensus 288 ~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~-~I~~~aF~~C~~L~~i~ 363 (394)
T 4gt6_A 288 PALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VT-KIPESAFSNCTALNNIE 363 (394)
T ss_dssp TTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CC-BCCGGGGTTCTTCCEEE
T ss_pred cccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cC-EEhHhHhhCCCCCCEEE
Confidence 356666664 3444233445777888888888754 55444567788888888888654 55 4544 455667777765
Q ss_pred EE
Q 040922 475 LS 476 (525)
Q Consensus 475 L~ 476 (525)
+.
T Consensus 364 ~~ 365 (394)
T 4gt6_A 364 YS 365 (394)
T ss_dssp ES
T ss_pred EC
Confidence 53
No 164
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=70.64 E-value=3.8 Score=40.89 Aligned_cols=59 Identities=12% Similarity=0.220 Sum_probs=32.1
Q ss_pred hhhccCCCcCEEEcCCCCCCCcCchhccCCCCCCEEeCCCCcCCCCCCh-hhhcCCCCcEEE
Q 040922 414 PYIFSLTSIESLDLSNNSLTGLVPDFLAELESLTVLNLSGNNLQGSLPA-GLVEKANNRSLS 474 (525)
Q Consensus 414 ~~~~~L~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~L~g~iP~-~l~~l~~l~~l~ 474 (525)
..|..+.+|+.+.+.++.++..-...|.++.+|+.+.|..+ ++ .|.. .+.+..+|+.+.
T Consensus 280 ~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~C~~L~~i~ 339 (379)
T 4h09_A 280 LLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LK-TIQVYAFKNCKALSTIS 339 (379)
T ss_dssp TTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CC-EECTTTTTTCTTCCCCC
T ss_pred cccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-cc-EEHHHHhhCCCCCCEEE
Confidence 34566666666666666666444556666666666666543 43 3333 233444454433
No 165
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=69.13 E-value=2.1 Score=29.09 Aligned_cols=13 Identities=8% Similarity=0.209 Sum_probs=5.0
Q ss_pred EEEEEehHHHHHH
Q 040922 496 FIVPVLASVVTFS 508 (525)
Q Consensus 496 ~~i~v~~~~~~~~ 508 (525)
+..+|+..+++++
T Consensus 12 IA~gVVgGv~~v~ 24 (44)
T 2l2t_A 12 IAAGVIGGLFILV 24 (44)
T ss_dssp HHHHHHHHHHHHH
T ss_pred EEEeehHHHHHHH
Confidence 3333343333333
No 166
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=68.64 E-value=3 Score=42.02 Aligned_cols=57 Identities=12% Similarity=0.153 Sum_probs=45.4
Q ss_pred CceEEecCCCCCccCCCchhhccCCCcCEEEcCCCCCCCcCchhccCCCCCCEEeCCCC
Q 040922 396 PRIISLNLSSSGISGEIDPYIFSLTSIESLDLSNNSLTGLVPDFLAELESLTVLNLSGN 454 (525)
Q Consensus 396 ~~L~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N 454 (525)
.+|+.++|.++ ++..-...|.++.+|+.++|..| +...-...|.++++|+.++|..+
T Consensus 320 ~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 320 TSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR 376 (394)
T ss_dssp TTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG
T ss_pred CCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC
Confidence 57888998754 66344567999999999999877 77566678999999999998654
No 167
>2w3j_A Carbohydrate binding module; sugar-binding protein, family 35, uronic acid sugars; 1.70A {Uncultured bacterium}
Probab=63.59 E-value=64 Score=27.47 Aligned_cols=86 Identities=12% Similarity=0.127 Sum_probs=51.0
Q ss_pred ceEEecCcCCCcceEEEEEeecCCCCCCCCCCeeEEEeCceEEEEEEeccCC---CcEEEEEEEecCCCcEEEEEEeC-C
Q 040922 76 NCYTLRPANGDVKFLIRASFMYGNYDGQDMPPSFDLMLGADVWDSVQLQDSD---GIITKEIIHMPNKGYIHVCLVHT-Y 151 (525)
Q Consensus 76 ~cY~~~v~~g~~~yliR~~F~y~nyd~~~~~p~F~v~~~~~~~~~v~~~~~~---~~~~~E~i~~~~~~~l~vcf~~~-~ 151 (525)
-.|++.+.+.| .|-|++++.-+.. ..+ .++|++++.....+.+.... ..-..++-+....+.=.|.|... .
T Consensus 41 v~~~V~v~~aG-~Y~l~~ryang~~--~~r--~~~l~VNG~~~~~v~~p~Tg~W~~w~t~~~~v~L~aG~ntI~l~~~~~ 115 (145)
T 2w3j_A 41 IVWSLSAASAK-TYTAQIRFGNGGT--SAR--RATVVVNDSQIKTLDFPTNSNWTQWQTVNVDIPLKAGTNSIKLVAETA 115 (145)
T ss_dssp EEEEEEESSCE-EEEEEEEEECCSS--SCC--CEEEEETTEEEEEECCCCCSCTTSCEEEEEEEEECSEEEEEEEEECST
T ss_pred EEEEEECCCCe-EEEEEEEEECCCC--CCe--EEEEEECCeEeeEEEecCCCCCCeeEEEEEEEEECCCceEEEEEEecC
Confidence 45666666666 9988777753322 233 78999999776666653321 12222223334444445666653 3
Q ss_pred CCCceeEEEEEEEcC
Q 040922 152 SGTPFISALELRPIT 166 (525)
Q Consensus 152 ~~~pFIn~iEl~~lp 166 (525)
.+.|-|..|+|.+.+
T Consensus 116 ~g~~niD~i~v~~~~ 130 (145)
T 2w3j_A 116 DGLANIDSIRVTGNG 130 (145)
T ss_dssp TCCCEEEEEEECSTT
T ss_pred cCCEEEEEEEEEcCC
Confidence 467999999987654
No 168
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=62.40 E-value=9.8 Score=37.76 Aligned_cols=77 Identities=9% Similarity=0.152 Sum_probs=56.9
Q ss_pred CceEEecCCCCCccCCCchhhccCCCcCEEEcCCCCCCCcCchhccCCCCCCEEeCCCCcCCCCCCh-hhhcCCCCcEEE
Q 040922 396 PRIISLNLSSSGISGEIDPYIFSLTSIESLDLSNNSLTGLVPDFLAELESLTVLNLSGNNLQGSLPA-GLVEKANNRSLS 474 (525)
Q Consensus 396 ~~L~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~L~g~iP~-~l~~l~~l~~l~ 474 (525)
..|+.+.+..+ ++..-...|.++.+|+.+.+..+ +...-...|..+.+|+.+.+.++.++ .|++ .+.+..+|+.+.
T Consensus 240 ~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~-~I~~~aF~~c~~L~~i~ 316 (379)
T 4h09_A 240 KALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIE-TLEPRVFMDCVKLSSVT 316 (379)
T ss_dssp SSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCC-EECTTTTTTCTTCCEEE
T ss_pred ccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccc-eehhhhhcCCCCCCEEE
Confidence 35667777654 44334456888999999999764 55455678899999999999999888 5554 466778888877
Q ss_pred E
Q 040922 475 L 475 (525)
Q Consensus 475 L 475 (525)
|
T Consensus 317 l 317 (379)
T 4h09_A 317 L 317 (379)
T ss_dssp C
T ss_pred c
Confidence 6
No 169
>2o14_A Hypothetical protein YXIM; NESG, X-RAY, SR595, structural genomics, PSI-2, protein structure initiative; 2.10A {Bacillus subtilis} SCOP: b.18.1.32 c.23.10.8
Probab=60.32 E-value=1.4e+02 Score=29.65 Aligned_cols=86 Identities=9% Similarity=0.121 Sum_probs=52.9
Q ss_pred eeCCCCCceEEecCcCCCcceEEEEEeecCCCCCCCCCCeeEEEeCceEEEEEEeccCCCcEEEEEEEecCCCcEEEEEE
Q 040922 69 SFPEGIRNCYTLRPANGDVKFLIRASFMYGNYDGQDMPPSFDLMLGADVWDSVQLQDSDGIITKEIIHMPNKGYIHVCLV 148 (525)
Q Consensus 69 ~Fp~~~~~cY~~~v~~g~~~yliR~~F~y~nyd~~~~~p~F~v~~~~~~~~~v~~~~~~~~~~~E~i~~~~~~~l~vcf~ 148 (525)
.|-.+..+.+++.+..| .|.|.+.+--+ +.-.|...+- ..+. +..+.....++.+.+.++.+.+.+.
T Consensus 71 ~~~~~~~~~f~v~~~~g--~Y~v~v~~g~~--------~~~~v~~e~~--~~~~-~~~g~~~~~~~~v~~~~g~~~l~~~ 137 (375)
T 2o14_A 71 AYGTKSNNTFNVDLPNG--LYEVKVTLGNT--------ARASVAAEGV--FQVI-NMTGDGAEDTFQIPVTDGQLNLLVT 137 (375)
T ss_dssp SCSTTCSCCEEEECCSE--EEEEEEEESSC--------SEEEEEETTE--EEEE-EEESTTCEEEEEEEECSSEEEEEEE
T ss_pred ccccCCceEEEEEcCCC--ceEEEEEecCC--------cceEEEEcce--EEEE-ecCCCcEEEEEEEEeeCCeEEEeee
Confidence 44333444556666555 99988888533 1333444332 1222 2233446677888888999999877
Q ss_pred eCC-CCCceeEEEEEEEcCC
Q 040922 149 HTY-SGTPFISALELRPITN 167 (525)
Q Consensus 149 ~~~-~~~pFIn~iEl~~lp~ 167 (525)
... +..+++++||+.+.+.
T Consensus 138 ~~~~g~~~~l~~i~v~~~~~ 157 (375)
T 2o14_A 138 EGKAGTAFTLSALKIKKLSD 157 (375)
T ss_dssp ESSTTSCCEEEEEEEEEEES
T ss_pred eccCCCCcccceEEEeccCC
Confidence 543 3468999999998654
No 170
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=59.61 E-value=18 Score=36.20 Aligned_cols=77 Identities=12% Similarity=0.207 Sum_probs=55.8
Q ss_pred CceEEecCCCCCccCCCchhhccCCCcCEEEcCCCCCCCcCchhccCCCCCCEEeCCCCcCCCCCCh-hhhcCCCCcEEE
Q 040922 396 PRIISLNLSSSGISGEIDPYIFSLTSIESLDLSNNSLTGLVPDFLAELESLTVLNLSGNNLQGSLPA-GLVEKANNRSLS 474 (525)
Q Consensus 396 ~~L~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~L~g~iP~-~l~~l~~l~~l~ 474 (525)
..|+.+.+..+..+ .-...|.++..|+.+.+. +.+...-...|.++.+|+.+.|..+ ++ .|.+ .+.+..+|+.+.
T Consensus 265 ~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~-~I~~~aF~~C~~L~~i~ 340 (394)
T 4gt6_A 265 AYLASVKMPDSVVS-IGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-IT-QILDDAFAGCEQLERIA 340 (394)
T ss_dssp SSCCEEECCTTCCE-ECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CC-EECTTTTTTCTTCCEEE
T ss_pred ccccEEecccccce-ecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-cc-EehHhHhhCCCCCCEEE
Confidence 35677777655433 344568889999999996 4566556678999999999999865 55 4544 466778898887
Q ss_pred EE
Q 040922 475 LS 476 (525)
Q Consensus 475 L~ 476 (525)
+.
T Consensus 341 ip 342 (394)
T 4gt6_A 341 IP 342 (394)
T ss_dssp EC
T ss_pred EC
Confidence 73
No 171
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=49.08 E-value=6.9 Score=26.57 Aligned_cols=19 Identities=16% Similarity=0.315 Sum_probs=9.6
Q ss_pred EEEEehHHHH-HHHHHHHHH
Q 040922 497 IVPVLASVVT-FSVFLAALV 515 (525)
Q Consensus 497 ~i~v~~~~~~-~~~~~~~~~ 515 (525)
...|++.+++ +++++++..
T Consensus 10 ~~~IA~gVVgGv~~~~ii~~ 29 (44)
T 2ks1_B 10 IPSIATGMVGALLLLLVVAL 29 (44)
T ss_dssp SSSSTHHHHHHHHHHHHHHH
T ss_pred cceEEeehhHHHHHHHHHHH
Confidence 3445566665 444444433
No 172
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=46.12 E-value=7.2 Score=26.47 Aligned_cols=17 Identities=12% Similarity=0.210 Sum_probs=8.0
Q ss_pred EEehHHHH-HHHHHHHHH
Q 040922 499 PVLASVVT-FSVFLAALV 515 (525)
Q Consensus 499 ~v~~~~~~-~~~~~~~~~ 515 (525)
.+++.+++ +++++++..
T Consensus 11 aIA~gVVgGv~~v~ii~~ 28 (44)
T 2l2t_A 11 LIAAGVIGGLFILVIVGL 28 (44)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred eEEEeehHHHHHHHHHHH
Confidence 34455555 444444433
No 173
>2w87_A Esterase D, XYL-CBM35; plant cell WALL degradation, carbohydrate protein binding, xylan, CMB35, glucuronic acid, hydrolase; HET: GCU; 1.60A {Cellvibrio japonicus} PDB: 2w46_A
Probab=37.10 E-value=1.5e+02 Score=24.80 Aligned_cols=84 Identities=17% Similarity=0.147 Sum_probs=47.6
Q ss_pred ceEEecCcCCCcceEEEEEeecCCCCCCCCCCeeEEEeCceEE--EEEEeccCC---CcEEEEEEEecCCCcEEEEEEeC
Q 040922 76 NCYTLRPANGDVKFLIRASFMYGNYDGQDMPPSFDLMLGADVW--DSVQLQDSD---GIITKEIIHMPNKGYIHVCLVHT 150 (525)
Q Consensus 76 ~cY~~~v~~g~~~yliR~~F~y~nyd~~~~~p~F~v~~~~~~~--~~v~~~~~~---~~~~~E~i~~~~~~~l~vcf~~~ 150 (525)
-.|++.+.+.| .|.|++++.-+. +..+ ..+|++++..- ..+.+.... ..-..+.-+......=.|.|...
T Consensus 41 v~~~V~v~~aG-~Y~l~~ryang~--~~~r--~~~l~VNG~~~g~~~v~~p~Tg~W~~w~t~~~~v~L~aG~ntI~l~~~ 115 (139)
T 2w87_A 41 VVWAIDATSSG-RRTLTIRYANGG--TANR--NGSLVINGGSNGNYTVSLPTTGAWTTWQTATIDVDLVQGNNIVQLSAT 115 (139)
T ss_dssp EEEEEEESSCE-EEEEEEEEECCS--SSCC--CEEEEETTTTTCEEEECCCCCSSTTCCEEEEEEEEECSEEEEEEEEES
T ss_pred EEEEEECCCCc-EEEEEEEEECCC--CCCc--eEEEEECCEEcceeEEEecCCCCCCccEEEEEEEEECCCceEEEEEEc
Confidence 34566665555 898877775432 2223 68888887653 556553311 11122233333444445666654
Q ss_pred C-CCCceeEEEEEEE
Q 040922 151 Y-SGTPFISALELRP 164 (525)
Q Consensus 151 ~-~~~pFIn~iEl~~ 164 (525)
. .+.|-|..|+|.+
T Consensus 116 ~~~g~~niD~i~v~~ 130 (139)
T 2w87_A 116 TAEGLPNIDSLSVVG 130 (139)
T ss_dssp STTCCCEEEEEEEES
T ss_pred CCCCCEEEEEEEEec
Confidence 3 4679999999875
No 174
>2wz8_A Cellulosome protein dockerin type I; sugar binding protein; 1.50A {Clostridium thermocellum}
Probab=30.98 E-value=2.5e+02 Score=24.00 Aligned_cols=89 Identities=9% Similarity=0.064 Sum_probs=50.6
Q ss_pred eEE-ecCcCCCcceEEEEEeecCCC------CCCCCCCeeEEEeCceEEEEEEecc---CCCcEEEEEEEecCCCcEEEE
Q 040922 77 CYT-LRPANGDVKFLIRASFMYGNY------DGQDMPPSFDLMLGADVWDSVQLQD---SDGIITKEIIHMPNKGYIHVC 146 (525)
Q Consensus 77 cY~-~~v~~g~~~yliR~~F~y~ny------d~~~~~p~F~v~~~~~~~~~v~~~~---~~~~~~~E~i~~~~~~~l~vc 146 (525)
.++ +.+.+.| .|.|+++|.-+.. ......-..+|++++..-..+.+.. .+..-...+.+....+.=.|.
T Consensus 50 tf~~V~~~~aG-~Y~l~irYang~~~~~~~y~~~~~~r~~~v~VNG~~~~~v~fp~Tg~W~~~~~~tv~V~L~aG~NtI~ 128 (156)
T 2wz8_A 50 QFNNVYVPQAG-TYRMVVQFANAEVFGQHSYNNNVVDRYCSISVNGGPEKGHYFFNTRGWNTYRTDIIDVYLNAGNNTIR 128 (156)
T ss_dssp EEEEEEESSCE-EEEEEEEEECCCBC-------CBCCEEEEEEETTCCCEEEEECCCSSTTCCEEEEEEEEECSEEEEEE
T ss_pred EEEEEecCCCc-EEEEEEEEECCCcccccccCCccCcceEEEEECCceeeEEEeCCCCCCCcceEEEEEEEECCCceEEE
Confidence 455 5555566 9999888864431 1110122688999876534454432 122222333444556667788
Q ss_pred EEeC--CCCCceeEEEEEEEcC
Q 040922 147 LVHT--YSGTPFISALELRPIT 166 (525)
Q Consensus 147 f~~~--~~~~pFIn~iEl~~lp 166 (525)
|... .+..|-|-.|+|.+..
T Consensus 129 ~~~~~~~~~~pdiD~i~v~~~~ 150 (156)
T 2wz8_A 129 FYNGTSGSYAPNIDKIAIAALE 150 (156)
T ss_dssp EECCSTTCBCCEEEEEEEEC--
T ss_pred EEecCCCCCCcEEEEEEEeccc
Confidence 8876 3446899999987643
No 175
>1iij_A ERBB-2 receptor protein-tyrosine kinase; alpha-helix-PI-bulge-alpha-helix, signaling protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=30.57 E-value=8 Score=24.85 Aligned_cols=11 Identities=36% Similarity=0.676 Sum_probs=4.7
Q ss_pred EehHHHHHHHH
Q 040922 500 VLASVVTFSVF 510 (525)
Q Consensus 500 v~~~~~~~~~~ 510 (525)
+++.+++++++
T Consensus 10 IaagVvglll~ 20 (35)
T 1iij_A 10 IIATVVGVLLF 20 (35)
T ss_dssp HHHHHHHHHHH
T ss_pred eHHHHHHHHHH
Confidence 34444453333
No 176
>2w47_A Lipolytic enzyme, G-D-S-L; hydrolase; HET: UNF; 1.40A {Clostridium thermocellum} PDB: 2w1w_A
Probab=27.49 E-value=2.7e+02 Score=23.19 Aligned_cols=89 Identities=10% Similarity=0.156 Sum_probs=52.6
Q ss_pred CCCceEEecCcCCCcceEEEEEeecCCCCCCCCCCeeEEEeCceE-EEEEEeccC---CCcEEEEEEEecCCCcEEEEEE
Q 040922 73 GIRNCYTLRPANGDVKFLIRASFMYGNYDGQDMPPSFDLMLGADV-WDSVQLQDS---DGIITKEIIHMPNKGYIHVCLV 148 (525)
Q Consensus 73 ~~~~cY~~~v~~g~~~yliR~~F~y~nyd~~~~~p~F~v~~~~~~-~~~v~~~~~---~~~~~~E~i~~~~~~~l~vcf~ 148 (525)
+..-.|++.+.+.| .|-|++++.-+.. ..+ .++|++++.. -..+.+... ...-....-+....+.=.|.|.
T Consensus 39 g~~v~~~V~v~~aG-~Y~l~~ryan~~~--~~~--~~~l~VNG~~~~~~v~~p~Tg~w~~w~~~~~~v~L~aG~ntI~l~ 113 (144)
T 2w47_A 39 GGYIEWNVNAPSSG-SYALIFRYANGTT--ANR--PMRITVNGNIVKPSMDFVSTGAWTTWNEAGIVANLNQGNNVIRAT 113 (144)
T ss_dssp TCEEEEEEEESSSE-EEEEEEEEECCSS--SCC--CEEEEETTEEEEEEECCCCCSSTTCCEEEEEEEEECSEEEEEEEE
T ss_pred CCEEEEEEECCCCc-EEEEEEEEECCCC--CCe--EEEEEECCeEeeeEEEecCCCCCCeeEEEEEEEEECCCccEEEEE
Confidence 44456777776666 9988887764432 223 7899999875 345554321 1211222223344444456665
Q ss_pred eC-CCCCceeEEEEEEEcC
Q 040922 149 HT-YSGTPFISALELRPIT 166 (525)
Q Consensus 149 ~~-~~~~pFIn~iEl~~lp 166 (525)
.. ..+.|.|..|+|.+.+
T Consensus 114 ~~~~~g~~niD~i~v~~~~ 132 (144)
T 2w47_A 114 AIASDGGPNVDYLKVFSAN 132 (144)
T ss_dssp ECSTTCCCEEEEEEEEECT
T ss_pred EeCCCCCEEEeEEEEEeCC
Confidence 43 3457999999998754
No 177
>2l9u_A Receptor tyrosine-protein kinase ERBB-3; transmenbrane dimer, membrane protein, EGFR; NMR {Homo sapiens}
Probab=22.20 E-value=25 Score=22.26 Aligned_cols=12 Identities=17% Similarity=0.246 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHH
Q 040922 504 VVTFSVFLAALV 515 (525)
Q Consensus 504 ~~~~~~~~~~~~ 515 (525)
+++++++++++.
T Consensus 13 i~gl~vif~~lg 24 (40)
T 2l9u_A 13 IAGLVVIFMMLG 24 (40)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC
Confidence 344444444443
No 178
>2vzp_A Aocbm35, EXO-beta-D-glucosaminidase; family 35, CSXA, glucuronic acid, hydrolase; 1.05A {Amycolatopsis orientalis} PDB: 2vzq_A* 2vzr_A*
Probab=21.72 E-value=3.2e+02 Score=22.02 Aligned_cols=86 Identities=15% Similarity=0.233 Sum_probs=48.7
Q ss_pred CCCCceEEecCcCCCcceEEEEEeecCCCCCCCCCCeeEEEeCceEEE-EEEeccC---CCcEEEEEEEecCCCcEEEEE
Q 040922 72 EGIRNCYTLRPANGDVKFLIRASFMYGNYDGQDMPPSFDLMLGADVWD-SVQLQDS---DGIITKEIIHMPNKGYIHVCL 147 (525)
Q Consensus 72 ~~~~~cY~~~v~~g~~~yliR~~F~y~nyd~~~~~p~F~v~~~~~~~~-~v~~~~~---~~~~~~E~i~~~~~~~l~vcf 147 (525)
.+..-.|++.+.+.| .|-|++++.-+. +.. ..++|++++.... .+.+... +..-.....+....+.=.|.|
T Consensus 37 ~g~~v~~~V~v~~aG-~Y~l~~rya~~~--~~~--~~~~l~VnG~~~~~~v~~p~tg~W~~w~~~~~~v~L~aG~ntI~l 111 (127)
T 2vzp_A 37 AGSSVEWTVTVPSAG-TYDVVVRYANGT--TTS--RPLDFSVNGSISASGVAFGSTGTWPAWTTKTVRVTLAAGVNKIKA 111 (127)
T ss_dssp TTCEEEEEEEESSSE-EEEEEEEEECCS--SSC--CCEEEEETTEEEEEEECCCCCSSTTCCEEEEEEEEECSEEEEEEE
T ss_pred CCCEEEEEEEcCCCC-EEEEEEEEEcCC--CCC--eEEEEEECCEEeeeEEEecCCCCCCceEEEEEEEEECCCceEEEE
Confidence 444557888777666 999888886543 222 3789999987643 3554321 111122223333444445555
Q ss_pred EeC-CCCCceeEEEEE
Q 040922 148 VHT-YSGTPFISALEL 162 (525)
Q Consensus 148 ~~~-~~~~pFIn~iEl 162 (525)
... ..+.|-|..|+|
T Consensus 112 ~~~~~~~~~niD~i~v 127 (127)
T 2vzp_A 112 VATTANGGPNVDKITL 127 (127)
T ss_dssp EECSTTCCCEEEEEEC
T ss_pred EEeCCCCCeEEEEEEC
Confidence 543 345677877764
No 179
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=20.26 E-value=14 Score=24.78 Aligned_cols=6 Identities=17% Similarity=0.678 Sum_probs=3.0
Q ss_pred eeccCC
Q 040922 520 LRRRKQ 525 (525)
Q Consensus 520 ~~~~~~ 525 (525)
++|++|
T Consensus 37 FkR~~~ 42 (42)
T 2k1a_A 37 FKRNRP 42 (42)
T ss_dssp TCCCCC
T ss_pred ccCCCC
Confidence 355553
Done!