BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040924
(208 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1DT6|A Chain A, Structure Of Mammalian Cytochrome P450 2c5
pdb|1N6B|A Chain A, Microsomal Cytochrome P450 2c5/3lvdh Complex With A
Dimethyl Derivative Of Sulfaphenazole
pdb|1NR6|A Chain A, Microsomal Cytochrome P450 2c53LVDH COMPLEX WITH
DICLOFENAC
Length = 473
Score = 64.7 bits (156), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 45/141 (31%), Positives = 72/141 (51%), Gaps = 7/141 (4%)
Query: 4 SRNNTKLPPGPWGLPFIGTLHQLDVSKPHVLFWELSKKYGPLMSLRLGFSPSLVVSSAKM 63
+ + KLPPGP P IG + Q+D + S+ YGP+ ++ LG P++V+ +
Sbjct: 5 TSSKGKLPPGPTPFPIIGNILQIDAKDISKSLTKFSECYGPVFTVYLGMKPTVVLHGYEA 64
Query: 64 AKEILKTHDLQFCSRPALVAQQKLSYNGLDLAFSPYDEYWREIRKICAIHLFNSNRGQNF 123
KE L +F R ++ +K+S GL +AFS + W+E+R+ + L N G+
Sbjct: 65 VKEALVDLGEEFAGRGSVPILEKVS-KGLGIAFS-NAKTWKEMRRFSLMTLRNFGMGK-- 120
Query: 124 RPIEKMNLIHQQASRPLFVEL 144
R IE Q+ +R L EL
Sbjct: 121 RSIEDRI---QEEARCLVEEL 138
>pdb|4I8V|A Chain A, Human Cytochrome P450 1a1 In Complex With
Alpha-naphthoflavone
pdb|4I8V|B Chain B, Human Cytochrome P450 1a1 In Complex With
Alpha-naphthoflavone
pdb|4I8V|C Chain C, Human Cytochrome P450 1a1 In Complex With
Alpha-naphthoflavone
pdb|4I8V|D Chain D, Human Cytochrome P450 1a1 In Complex With
Alpha-naphthoflavone
Length = 491
Score = 63.2 bits (152), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 36/97 (37%), Positives = 53/97 (54%), Gaps = 4/97 (4%)
Query: 3 TSRNNTKLPPGPWGLPFIGTLHQLDVSK-PHVLFWELSKKYGPLMSLRLGFSPSLVVSSA 61
TS K PPGPWG P IG H L + K PH+ +S++YG ++ +R+G +P +V+S
Sbjct: 5 TSSKGLKNPPGPWGWPLIG--HMLTLGKNPHLALSRMSQQYGDVLQIRIGSTPVVVLSGL 62
Query: 62 KMAKEILKTHDLQFCSRPALVAQQKLSYNGLDLAFSP 98
++ L F RP L +S NG ++FSP
Sbjct: 63 DTIRQALVRQGDDFKGRPDLYTFTLIS-NGQSMSFSP 98
>pdb|1PQ2|A Chain A, Crystal Structure Of Human Drug Metabolizing Cytochrome
P450 2c8
pdb|1PQ2|B Chain B, Crystal Structure Of Human Drug Metabolizing Cytochrome
P450 2c8
pdb|2NNH|A Chain A, Cyp2c8dh Complexed With 2 Molecules Of 9-Cis Retinoic Acid
pdb|2NNH|B Chain B, Cyp2c8dh Complexed With 2 Molecules Of 9-Cis Retinoic Acid
pdb|2NNI|A Chain A, Cyp2c8dh Complexed With Montelukast
pdb|2NNJ|A Chain A, Cyp2c8dh Complexed With Felodipine
pdb|2VN0|A Chain A, Cyp2c8dh Complexed With Troglitazone
Length = 476
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/119 (34%), Positives = 59/119 (49%), Gaps = 4/119 (3%)
Query: 9 KLPPGPWGLPFIGTLHQLDVSKPHVLFWELSKKYGPLMSLRLGFSPSLVVSSAKMAKEIL 68
KLPPGP LP IG + Q+DV F SK YGP+ ++ G +P +V + KE L
Sbjct: 10 KLPPGPTPLPIIGNMLQIDVKDICKSFTNFSKVYGPVFTVYFGMNPIVVFHGYEAVKEAL 69
Query: 69 KTHDLQFCSRPALVAQQKLSYNGLDLAFSPYDEYWREIRKICAIHLFNSNRGQNFRPIE 127
+ +F R Q+++ GL + S + W+EIR+ L N G+ R IE
Sbjct: 70 IDNGEEFSGRGNSPISQRIT-KGLGI-ISSNGKRWKEIRRFSLTTLRNFGMGK--RSIE 124
>pdb|4GQS|A Chain A, Structure Of Human Microsomal Cytochrome P450 (cyp) 2c19
pdb|4GQS|B Chain B, Structure Of Human Microsomal Cytochrome P450 (cyp) 2c19
pdb|4GQS|C Chain C, Structure Of Human Microsomal Cytochrome P450 (cyp) 2c19
pdb|4GQS|D Chain D, Structure Of Human Microsomal Cytochrome P450 (cyp) 2c19
Length = 477
Score = 61.2 bits (147), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 46/142 (32%), Positives = 67/142 (47%), Gaps = 7/142 (4%)
Query: 3 TSRNNTKLPPGPWGLPFIGTLHQLDVSKPHVLFWELSKKYGPLMSLRLGFSPSLVVSSAK 62
TS KLPPGP LP IG + Q+D+ LSK YGP+ +L G +V+ +
Sbjct: 5 TSSGRGKLPPGPTPLPVIGNILQIDIKDVSKSLTNLSKIYGPVFTLYFGLERMVVLHGYE 64
Query: 63 MAKEILKTHDLQFCSRPALVAQQKLSYNGLDLAFSPYDEYWREIRKICAIHLFNSNRGQN 122
+ KE L +F R ++ + G + FS + W+EIR+ + L N G+
Sbjct: 65 VVKEALIDLGEEFSGRGHFPLAER-ANRGFGIVFS-NGKRWKEIRRFSLMTLRNFGMGK- 121
Query: 123 FRPIEKMNLIHQQASRPLFVEL 144
R IE Q+ +R L EL
Sbjct: 122 -RSIEDRV---QEEARCLVEEL 139
>pdb|1R9O|A Chain A, Crystal Structure Of P4502c9 With Flurbiprofen Bound
Length = 477
Score = 60.8 bits (146), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 46/142 (32%), Positives = 66/142 (46%), Gaps = 7/142 (4%)
Query: 3 TSRNNTKLPPGPWGLPFIGTLHQLDVSKPHVLFWELSKKYGPLMSLRLGFSPSLVVSSAK 62
TS KLPPGP LP IG + Q+ + LSK YGP+ +L G P +V+ +
Sbjct: 5 TSSGRGKLPPGPTPLPVIGNILQIGIKDISKSLTNLSKVYGPVFTLYFGLKPIVVLHGYE 64
Query: 63 MAKEILKTHDLQFCSRPALVAQQKLSYNGLDLAFSPYDEYWREIRKICAIHLFNSNRGQN 122
KE L +F R ++ + G + FS + W+EIR+ + L N G+
Sbjct: 65 AVKEALIDLGEEFSGRGIFPLAERAN-RGFGIVFS-NGKKWKEIRRFSLMTLRNFGMGK- 121
Query: 123 FRPIEKMNLIHQQASRPLFVEL 144
R IE Q+ +R L EL
Sbjct: 122 -RSIEDRV---QEEARCLVEEL 139
>pdb|3E4E|A Chain A, Human Cytochrome P450 2e1 In Complex With The Inhibitor 4-
Methylpyrazole
pdb|3E4E|B Chain B, Human Cytochrome P450 2e1 In Complex With The Inhibitor 4-
Methylpyrazole
pdb|3E6I|A Chain A, Human Cytochrome P450 2e1 In Complex With The Inhibitor
Indazole
pdb|3E6I|B Chain B, Human Cytochrome P450 2e1 In Complex With The Inhibitor
Indazole
pdb|3GPH|A Chain A, Human Cytochrome P450 2e1 In Complex With
Omega-Imidazolyl-Decanoic Acid
pdb|3GPH|B Chain B, Human Cytochrome P450 2e1 In Complex With
Omega-Imidazolyl-Decanoic Acid
pdb|3KOH|A Chain A, Cytochrome P450 2e1 With Omega-Imidazolyl Octanoic Acid
pdb|3KOH|B Chain B, Cytochrome P450 2e1 With Omega-Imidazolyl Octanoic Acid
pdb|3LC4|A Chain A, Human Cytochrome P450 2e1 In Complex With
Omega-Imidazolyl-Dodecanoic Acid
pdb|3LC4|B Chain B, Human Cytochrome P450 2e1 In Complex With
Omega-Imidazolyl-Dodecanoic Acid
pdb|3T3Z|A Chain A, Human Cytochrome P450 2e1 In Complex With Pilocarpine
pdb|3T3Z|B Chain B, Human Cytochrome P450 2e1 In Complex With Pilocarpine
pdb|3T3Z|C Chain C, Human Cytochrome P450 2e1 In Complex With Pilocarpine
pdb|3T3Z|D Chain D, Human Cytochrome P450 2e1 In Complex With Pilocarpine
Length = 476
Score = 57.8 bits (138), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 57/118 (48%), Gaps = 3/118 (2%)
Query: 4 SRNNTKLPPGPWGLPFIGTLHQLDVSKPHVLFWELSKKYGPLMSLRLGFSPSLVVSSAKM 63
+ + KLPPGP+ LP IG L QL++ F L++++GP+ +L +G +V+ K
Sbjct: 5 TSSKGKLPPGPFPLPIIGNLFQLELKNIPKSFTRLAQRFGPVFTLYVGSQRMVVMHGYKA 64
Query: 64 AKEILKTHDLQFCSRPALVAQQKLSYNGLDLAFSPYDEYWREIRKICAIHLFNSNRGQ 121
KE L + +F R L A G+ P W++IR+ L N G+
Sbjct: 65 VKEALLDYKDEFSGRGDLPAFHAHRDRGIIFNNGP---TWKDIRRFSLTTLRNYGMGK 119
>pdb|3PM0|A Chain A, Structural Characterization Of The Complex Between Alpha-
Naphthoflavone And Human Cytochrome P450 1b1 (Cyp1b1)
Length = 507
Score = 57.4 bits (137), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 51/98 (52%), Gaps = 2/98 (2%)
Query: 11 PPGPWGLPFIGTLHQLDVSKPHVLFWELSKKYGPLMSLRLGFSPSLVVSSAKMAKEILKT 70
PPGP+ P IG + + H+ F L+++YG + +RLG P +V++ + + L
Sbjct: 11 PPGPFAWPLIGNAAAVGQAA-HLSFARLARRYGDVFQIRLGSCPIVVLNGERAIHQALVQ 69
Query: 71 HDLQFCSRPALVAQQKLSYNGLDLAFSPYDEYWREIRK 108
F RP+ + + +S G +AF Y E+W+ R+
Sbjct: 70 QGSAFADRPSFASFRVVS-GGRSMAFGHYSEHWKVQRR 106
>pdb|3RUK|A Chain A, Human Cytochrome P450 Cyp17a1 In Complex With Abiraterone
pdb|3RUK|B Chain B, Human Cytochrome P450 Cyp17a1 In Complex With Abiraterone
pdb|3RUK|C Chain C, Human Cytochrome P450 Cyp17a1 In Complex With Abiraterone
pdb|3RUK|D Chain D, Human Cytochrome P450 Cyp17a1 In Complex With Abiraterone
pdb|3SWZ|A Chain A, Human Cytochrome P450 17a1 In Complex With Tok-001
pdb|3SWZ|B Chain B, Human Cytochrome P450 17a1 In Complex With Tok-001
pdb|3SWZ|C Chain C, Human Cytochrome P450 17a1 In Complex With Tok-001
pdb|3SWZ|D Chain D, Human Cytochrome P450 17a1 In Complex With Tok-001
Length = 494
Score = 57.0 bits (136), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 54/110 (49%), Gaps = 1/110 (0%)
Query: 2 ITSRNNTKLPPGPWGLPFIGTLHQLDV-SKPHVLFWELSKKYGPLMSLRLGFSPSLVVSS 60
+ + K P LP +G+L L H F++L KKYGP+ S+R+G +++V
Sbjct: 1 MAKKTGAKYPKSLLSLPLVGSLPFLPRHGHMHNNFFKLQKKYGPIYSVRMGTKTTVIVGH 60
Query: 61 AKMAKEILKTHDLQFCSRPALVAQQKLSYNGLDLAFSPYDEYWREIRKIC 110
++AKE+L F RP + S N +AF+ +W+ R++
Sbjct: 61 HQLAKEVLIKKGKDFSGRPQMATLDIASNNRKGIAFADSGAHWQLHRRLA 110
>pdb|1OG2|A Chain A, Structure Of Human Cytochrome P450 Cyp2c9
pdb|1OG2|B Chain B, Structure Of Human Cytochrome P450 Cyp2c9
pdb|1OG5|A Chain A, Structure Of Human Cytochrome P450 Cyp2c9
pdb|1OG5|B Chain B, Structure Of Human Cytochrome P450 Cyp2c9
Length = 475
Score = 55.1 bits (131), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 62/134 (46%), Gaps = 7/134 (5%)
Query: 11 PPGPWGLPFIGTLHQLDVSKPHVLFWELSKKYGPLMSLRLGFSPSLVVSSAKMAKEILKT 70
PPGP LP IG + Q+ + LSK YGP+ +L G P +V+ + KE L
Sbjct: 11 PPGPTPLPVIGNILQIGIKDISKSLTNLSKVYGPVFTLYFGLKPIVVLHGYEAVKEALID 70
Query: 71 HDLQFCSRPALVAQQKLSYNGLDLAFSPYDEYWREIRKICAIHLFNSNRGQNFRPIEKMN 130
+F R ++ + G + FS + W+EIR+ + L N G+ R IE
Sbjct: 71 LGEEFSGRGIFPLAERAN-RGFGIVFS-NGKKWKEIRRFSLMTLRNFGMGK--RSIEDRV 126
Query: 131 LIHQQASRPLFVEL 144
Q+ +R L EL
Sbjct: 127 ---QEEARCLVEEL 137
>pdb|2HI4|A Chain A, Crystal Structure Of Human Microsomal P450 1a2 In Complex
With Alpha-Naphthoflavone
Length = 495
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 48/90 (53%), Gaps = 4/90 (4%)
Query: 9 KLPPGPWGLPFIGTLHQLDVSK-PHVLFWELSKKYGPLMSLRLGFSPSLVVSSAKMAKEI 67
K PP PWG P +G H L + K PH+ +S++YG ++ +R+G +P LV+S ++
Sbjct: 16 KSPPEPWGWPLLG--HVLTLGKNPHLALSRMSQRYGDVLQIRIGSTPVLVLSRLDTIRQA 73
Query: 68 LKTHDLQFCSRPALVAQQKLSYNGLDLAFS 97
L F RP L ++ +G L FS
Sbjct: 74 LVRQGDDFKGRPDLYTSTLIT-DGQSLTFS 102
>pdb|4H1N|A Chain A, Crystal Structure Of P450 2b4 F297a Mutant In Complex With
Anti- Platelet Drug Clopidogrel
Length = 479
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 67/146 (45%), Gaps = 7/146 (4%)
Query: 4 SRNNTKLPPGPWGLPFIGTLHQLDVSKPHVLFWELSKKYGPLMSLRLGFSPSLVVSSAKM 63
+ + KLPPGP LP +G L Q+D F L +KYG + ++ LG P +V+
Sbjct: 5 TSSKGKLPPGPSPLPVLGNLLQMDRKGLLRSFLRLREKYGDVFTVYLGSRPVVVLCGTDA 64
Query: 64 AKEILKTHDLQFCSRPALVAQQKLSYNGLDLAFSPYDEYWREIRKICAIHLFNSNRGQNF 123
+E L F R + + + G + F+ E WR +R+ + + G+
Sbjct: 65 IREALVDQAEAFSGRGKIAVVDPI-FQGYGVIFA-NGERWRALRRFSLATMRDFGMGK-- 120
Query: 124 RPIEKMNLIHQQASRPLFVELVLARG 149
R +E+ Q+ +R L EL ++G
Sbjct: 121 RSVEERI---QEEARCLVEELRKSKG 143
>pdb|2Q6N|A Chain A, Structure Of Cytochrome P450 2b4 With Bound 1-(4-
Cholorophenyl)imidazole
pdb|2Q6N|B Chain B, Structure Of Cytochrome P450 2b4 With Bound 1-(4-
Cholorophenyl)imidazole
pdb|2Q6N|C Chain C, Structure Of Cytochrome P450 2b4 With Bound 1-(4-
Cholorophenyl)imidazole
pdb|2Q6N|D Chain D, Structure Of Cytochrome P450 2b4 With Bound 1-(4-
Cholorophenyl)imidazole
pdb|2Q6N|E Chain E, Structure Of Cytochrome P450 2b4 With Bound 1-(4-
Cholorophenyl)imidazole
pdb|2Q6N|F Chain F, Structure Of Cytochrome P450 2b4 With Bound 1-(4-
Cholorophenyl)imidazole
pdb|2Q6N|G Chain G, Structure Of Cytochrome P450 2b4 With Bound 1-(4-
Cholorophenyl)imidazole
Length = 478
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 67/146 (45%), Gaps = 7/146 (4%)
Query: 4 SRNNTKLPPGPWGLPFIGTLHQLDVSKPHVLFWELSKKYGPLMSLRLGFSPSLVVSSAKM 63
+ + KLPPGP LP +G L Q+D F L +KYG + ++ LG P +V+
Sbjct: 5 TSSKGKLPPGPSPLPVLGNLLQMDRKGLLRSFLRLREKYGDVFTVYLGSRPVVVLCGTDA 64
Query: 64 AKEILKTHDLQFCSRPALVAQQKLSYNGLDLAFSPYDEYWREIRKICAIHLFNSNRGQNF 123
+E L F R + + + G + F+ E WR +R+ + + G+
Sbjct: 65 IREALVDQAEAFSGRGKIAVVDPI-FQGYGVIFA-NGERWRALRRFSLATMRDFGMGK-- 120
Query: 124 RPIEKMNLIHQQASRPLFVELVLARG 149
R +E+ Q+ +R L EL ++G
Sbjct: 121 RSVEERI---QEEARCLVEELRKSKG 143
>pdb|1PO5|A Chain A, Structure Of Mammalian Cytochrome P450 2b4
Length = 476
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 67/146 (45%), Gaps = 7/146 (4%)
Query: 4 SRNNTKLPPGPWGLPFIGTLHQLDVSKPHVLFWELSKKYGPLMSLRLGFSPSLVVSSAKM 63
+ + KLPPGP LP +G L Q+D F L +KYG + ++ LG P +V+
Sbjct: 5 TSSKGKLPPGPSPLPVLGNLLQMDRKGLLRSFLRLREKYGDVFTVYLGSRPVVVLCGTDA 64
Query: 64 AKEILKTHDLQFCSRPALVAQQKLSYNGLDLAFSPYDEYWREIRKICAIHLFNSNRGQNF 123
+E L F R + + + G + F+ E WR +R+ + + G+
Sbjct: 65 IREALVDQAEAFSGRGKIAVVDPI-FQGYGVIFA-NGERWRALRRFSLATMRDFGMGK-- 120
Query: 124 RPIEKMNLIHQQASRPLFVELVLARG 149
R +E+ Q+ +R L EL ++G
Sbjct: 121 RSVEERI---QEEARCLVEELRKSKG 143
>pdb|3TK3|A Chain A, Cytochrome P450 2b4 Mutant L437a In Complex With
4-(4-Chlorophenyl) Imidazole
pdb|3TK3|B Chain B, Cytochrome P450 2b4 Mutant L437a In Complex With
4-(4-Chlorophenyl) Imidazole
pdb|3TK3|C Chain C, Cytochrome P450 2b4 Mutant L437a In Complex With
4-(4-Chlorophenyl) Imidazole
pdb|3TK3|D Chain D, Cytochrome P450 2b4 Mutant L437a In Complex With
4-(4-Chlorophenyl) Imidazole
Length = 476
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 67/146 (45%), Gaps = 7/146 (4%)
Query: 4 SRNNTKLPPGPWGLPFIGTLHQLDVSKPHVLFWELSKKYGPLMSLRLGFSPSLVVSSAKM 63
+ + KLPPGP LP +G L Q+D F L +KYG + ++ LG P +V+
Sbjct: 5 TSSKGKLPPGPSPLPVLGNLLQMDRKGLLRSFLRLREKYGDVFTVYLGSRPVVVLCGTDA 64
Query: 64 AKEILKTHDLQFCSRPALVAQQKLSYNGLDLAFSPYDEYWREIRKICAIHLFNSNRGQNF 123
+E L F R + + + G + F+ E WR +R+ + + G+
Sbjct: 65 IREALVDQAEAFSGRGKIAVVDPI-FQGYGVIFA-NGERWRALRRFSLATMRDFGMGK-- 120
Query: 124 RPIEKMNLIHQQASRPLFVELVLARG 149
R +E+ Q+ +R L EL ++G
Sbjct: 121 RSVEERI---QEEARCLVEELRKSKG 143
>pdb|1SUO|A Chain A, Structure Of Mammalian Cytochrome P450 2b4 With Bound
4-(4- Chlorophenyl)imidazole
pdb|2BDM|A Chain A, Structure Of Cytochrome P450 2b4 With Bound Bifonazole
pdb|3G5N|A Chain A, Triple Ligand Occupancy Crystal Structure Of Cytochrome
P450 Complex With The Inhibitor
1-Biphenyl-4-Methyl-1h-Imidazole
pdb|3G5N|B Chain B, Triple Ligand Occupancy Crystal Structure Of Cytochrome
P450 Complex With The Inhibitor
1-Biphenyl-4-Methyl-1h-Imidazole
pdb|3G5N|C Chain C, Triple Ligand Occupancy Crystal Structure Of Cytochrome
P450 Complex With The Inhibitor
1-Biphenyl-4-Methyl-1h-Imidazole
pdb|3G5N|D Chain D, Triple Ligand Occupancy Crystal Structure Of Cytochrome
P450 Complex With The Inhibitor
1-Biphenyl-4-Methyl-1h-Imidazole
pdb|3G93|A Chain A, Single Ligand Occupancy Crystal Structure Of Cytochrome
P450 Complex With The Inhibitor
1-Biphenyl-4-Methyl-1h-Imidazole
pdb|3G93|B Chain B, Single Ligand Occupancy Crystal Structure Of Cytochrome
P450 Complex With The Inhibitor
1-Biphenyl-4-Methyl-1h-Imidazole
pdb|3G93|C Chain C, Single Ligand Occupancy Crystal Structure Of Cytochrome
P450 Complex With The Inhibitor
1-Biphenyl-4-Methyl-1h-Imidazole
pdb|3G93|D Chain D, Single Ligand Occupancy Crystal Structure Of Cytochrome
P450 Complex With The Inhibitor
1-Biphenyl-4-Methyl-1h-Imidazole
pdb|3KW4|A Chain A, Crystal Structure Of Cytochrome 2b4 In Complex With The
Anti-Platelet Drug Ticlopidine
pdb|3ME6|A Chain A, Crystal Structure Of Cytochrome 2b4 In Complex With The
Anti-Platelet Drug Clopidogrel
pdb|3ME6|B Chain B, Crystal Structure Of Cytochrome 2b4 In Complex With The
Anti-Platelet Drug Clopidogrel
pdb|3ME6|C Chain C, Crystal Structure Of Cytochrome 2b4 In Complex With The
Anti-Platelet Drug Clopidogrel
pdb|3ME6|D Chain D, Crystal Structure Of Cytochrome 2b4 In Complex With The
Anti-Platelet Drug Clopidogrel
pdb|3MVR|A Chain A, Crystal Structure Of Cytochrome P450 2b4-H226y In A Closed
Conformation
pdb|3MVR|B Chain B, Crystal Structure Of Cytochrome P450 2b4-H226y In A Closed
Conformation
pdb|3R1A|A Chain A, Closed Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1A|B Chain B, Closed Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1A|C Chain C, Closed Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1A|D Chain D, Closed Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1A|E Chain E, Closed Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1A|F Chain F, Closed Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1A|G Chain G, Closed Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1A|H Chain H, Closed Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1B|A Chain A, Open Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1B|B Chain B, Open Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1B|C Chain C, Open Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1B|D Chain D, Open Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3TMZ|A Chain A, Crystal Structure Of P450 2b4(H226y) In Complex With
Amlodipine
pdb|3UAS|A Chain A, Cytochrome P450 2b4 Covalently Bound To The
Mechanism-based Inactivator 9-ethynylphenanthrene
Length = 476
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 67/146 (45%), Gaps = 7/146 (4%)
Query: 4 SRNNTKLPPGPWGLPFIGTLHQLDVSKPHVLFWELSKKYGPLMSLRLGFSPSLVVSSAKM 63
+ + KLPPGP LP +G L Q+D F L +KYG + ++ LG P +V+
Sbjct: 5 TSSKGKLPPGPSPLPVLGNLLQMDRKGLLRSFLRLREKYGDVFTVYLGSRPVVVLCGTDA 64
Query: 64 AKEILKTHDLQFCSRPALVAQQKLSYNGLDLAFSPYDEYWREIRKICAIHLFNSNRGQNF 123
+E L F R + + + G + F+ E WR +R+ + + G+
Sbjct: 65 IREALVDQAEAFSGRGKIAVVDPI-FQGYGVIFA-NGERWRALRRFSLATMRDFGMGK-- 120
Query: 124 RPIEKMNLIHQQASRPLFVELVLARG 149
R +E+ Q+ +R L EL ++G
Sbjct: 121 RSVEERI---QEEARCLVEELRKSKG 143
>pdb|2P85|A Chain A, Structure Of Human Lung Cytochrome P450 2a13 With Indole
Bound In Two Alternate Conformations
pdb|2P85|B Chain B, Structure Of Human Lung Cytochrome P450 2a13 With Indole
Bound In Two Alternate Conformations
pdb|2P85|C Chain C, Structure Of Human Lung Cytochrome P450 2a13 With Indole
Bound In Two Alternate Conformations
pdb|2P85|D Chain D, Structure Of Human Lung Cytochrome P450 2a13 With Indole
Bound In Two Alternate Conformations
pdb|2P85|E Chain E, Structure Of Human Lung Cytochrome P450 2a13 With Indole
Bound In Two Alternate Conformations
pdb|2P85|F Chain F, Structure Of Human Lung Cytochrome P450 2a13 With Indole
Bound In Two Alternate Conformations
pdb|3T3S|A Chain A, Human Cytochrome P450 2a13 In Complex With Pilocarpine
pdb|3T3S|B Chain B, Human Cytochrome P450 2a13 In Complex With Pilocarpine
pdb|3T3S|C Chain C, Human Cytochrome P450 2a13 In Complex With Pilocarpine
pdb|3T3S|D Chain D, Human Cytochrome P450 2a13 In Complex With Pilocarpine
pdb|3T3S|E Chain E, Human Cytochrome P450 2a13 In Complex With Pilocarpine
pdb|3T3S|F Chain F, Human Cytochrome P450 2a13 In Complex With Pilocarpine
pdb|3T3S|G Chain G, Human Cytochrome P450 2a13 In Complex With Pilocarpine
pdb|3T3S|H Chain H, Human Cytochrome P450 2a13 In Complex With Pilocarpine
pdb|4EJG|A Chain A, Human Cytochrome P450 2a13 In Complex With Nicotine
pdb|4EJG|B Chain B, Human Cytochrome P450 2a13 In Complex With Nicotine
pdb|4EJG|C Chain C, Human Cytochrome P450 2a13 In Complex With Nicotine
pdb|4EJG|D Chain D, Human Cytochrome P450 2a13 In Complex With Nicotine
pdb|4EJG|E Chain E, Human Cytochrome P450 2a13 In Complex With Nicotine
pdb|4EJG|F Chain F, Human Cytochrome P450 2a13 In Complex With Nicotine
pdb|4EJG|G Chain G, Human Cytochrome P450 2a13 In Complex With Nicotine
pdb|4EJG|H Chain H, Human Cytochrome P450 2a13 In Complex With Nicotine
pdb|4EJH|A Chain A, Human Cytochrome P450 2a13 In Complex With
4-(Methylnitrosamino)-1-(3- Pyridyl)-1-Butanone (Nnk)
pdb|4EJH|B Chain B, Human Cytochrome P450 2a13 In Complex With
4-(Methylnitrosamino)-1-(3- Pyridyl)-1-Butanone (Nnk)
pdb|4EJH|C Chain C, Human Cytochrome P450 2a13 In Complex With
4-(Methylnitrosamino)-1-(3- Pyridyl)-1-Butanone (Nnk)
pdb|4EJH|D Chain D, Human Cytochrome P450 2a13 In Complex With
4-(Methylnitrosamino)-1-(3- Pyridyl)-1-Butanone (Nnk)
pdb|4EJH|E Chain E, Human Cytochrome P450 2a13 In Complex With
4-(Methylnitrosamino)-1-(3- Pyridyl)-1-Butanone (Nnk)
pdb|4EJH|F Chain F, Human Cytochrome P450 2a13 In Complex With
4-(Methylnitrosamino)-1-(3- Pyridyl)-1-Butanone (Nnk)
pdb|4EJH|G Chain G, Human Cytochrome P450 2a13 In Complex With
4-(Methylnitrosamino)-1-(3- Pyridyl)-1-Butanone (Nnk)
pdb|4EJH|H Chain H, Human Cytochrome P450 2a13 In Complex With
4-(Methylnitrosamino)-1-(3- Pyridyl)-1-Butanone (Nnk)
pdb|4EJI|A Chain A, Human Cytochrome P450 2a13 In Complex With Two Molecules
Of 4- (Methylnitrosamino)-1-(3-Puridyl)-1-Butanone
Length = 476
Score = 50.8 bits (120), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 54/111 (48%), Gaps = 2/111 (1%)
Query: 4 SRNNTKLPPGPWGLPFIGTLHQLDVSKPHVLFWELSKKYGPLMSLRLGFSPSLVVSSAKM 63
+ + KLPPGP LPFIG QL+ + + ++S++YGP+ ++ LG +V+
Sbjct: 5 TSSKGKLPPGPTPLPFIGNYLQLNTEQMYNSLMKISERYGPVFTIHLGPRRVVVLCGHDA 64
Query: 64 AKEILKTHDLQFCSRPALVAQQKLSYNGLDLAFSPYDEYWREIRKICAIHL 114
KE L +F R L + G +AFS E +++R+ L
Sbjct: 65 VKEALVDQAEEFSGRGEQATFDWL-FKGYGVAFS-NGERAKQLRRFSIATL 113
>pdb|2PG7|A Chain A, Crystal Structure Of Human Microsomal P450 2a6 N297qI300V
pdb|2PG7|B Chain B, Crystal Structure Of Human Microsomal P450 2a6 N297qI300V
pdb|2PG7|C Chain C, Crystal Structure Of Human Microsomal P450 2a6 N297qI300V
pdb|2PG7|D Chain D, Crystal Structure Of Human Microsomal P450 2a6 N297qI300V
Length = 476
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 60/125 (48%), Gaps = 4/125 (3%)
Query: 4 SRNNTKLPPGPWGLPFIGTLHQLDVSKPHVLFWELSKKYGPLMSLRLGFSPSLVVSSAKM 63
+ + KLPPGP LPFIG QL+ + + ++S++YGP+ ++ LG +V+
Sbjct: 5 TSSKGKLPPGPTPLPFIGNYLQLNTEQMYNSLMKISERYGPVFTIHLGPRRVVVLCGHDA 64
Query: 64 AKEILKTHDLQFCSRPALVAQQKLSYNGLDLAFSPYDEYWREIRKICAIHLFNSNRGQNF 123
+E L +F R A + G + FS E +++R+ L + G+
Sbjct: 65 VREALVDQAEEFSGR-GEQATFDWVFKGYGVVFS-NGERAKQLRRFSIATLRDFGVGK-- 120
Query: 124 RPIEK 128
R IE+
Sbjct: 121 RGIEE 125
>pdb|2PG6|A Chain A, Crystal Structure Of Human Microsomal P450 2a6 L240cN297Q
pdb|2PG6|B Chain B, Crystal Structure Of Human Microsomal P450 2a6 L240cN297Q
pdb|2PG6|C Chain C, Crystal Structure Of Human Microsomal P450 2a6 L240cN297Q
pdb|2PG6|D Chain D, Crystal Structure Of Human Microsomal P450 2a6 L240cN297Q
Length = 476
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 60/125 (48%), Gaps = 4/125 (3%)
Query: 4 SRNNTKLPPGPWGLPFIGTLHQLDVSKPHVLFWELSKKYGPLMSLRLGFSPSLVVSSAKM 63
+ + KLPPGP LPFIG QL+ + + ++S++YGP+ ++ LG +V+
Sbjct: 5 TSSKGKLPPGPTPLPFIGNYLQLNTEQMYNSLMKISERYGPVFTIHLGPRRVVVLCGHDA 64
Query: 64 AKEILKTHDLQFCSRPALVAQQKLSYNGLDLAFSPYDEYWREIRKICAIHLFNSNRGQNF 123
+E L +F R A + G + FS E +++R+ L + G+
Sbjct: 65 VREALVDQAEEFSGR-GEQATFDWVFKGYGVVFS-NGERAKQLRRFSIATLRDFGVGK-- 120
Query: 124 RPIEK 128
R IE+
Sbjct: 121 RGIEE 125
>pdb|2PG5|A Chain A, Crystal Structure Of Human Microsomal P450 2a6 N297q
pdb|2PG5|B Chain B, Crystal Structure Of Human Microsomal P450 2a6 N297q
pdb|2PG5|C Chain C, Crystal Structure Of Human Microsomal P450 2a6 N297q
pdb|2PG5|D Chain D, Crystal Structure Of Human Microsomal P450 2a6 N297q
Length = 476
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 60/125 (48%), Gaps = 4/125 (3%)
Query: 4 SRNNTKLPPGPWGLPFIGTLHQLDVSKPHVLFWELSKKYGPLMSLRLGFSPSLVVSSAKM 63
+ + KLPPGP LPFIG QL+ + + ++S++YGP+ ++ LG +V+
Sbjct: 5 TSSKGKLPPGPTPLPFIGNYLQLNTEQMYNSLMKISERYGPVFTIHLGPRRVVVLCGHDA 64
Query: 64 AKEILKTHDLQFCSRPALVAQQKLSYNGLDLAFSPYDEYWREIRKICAIHLFNSNRGQNF 123
+E L +F R A + G + FS E +++R+ L + G+
Sbjct: 65 VREALVDQAEEFSGR-GEQATFDWVFKGYGVVFS-NGERAKQLRRFSIATLRDFGVGK-- 120
Query: 124 RPIEK 128
R IE+
Sbjct: 121 RGIEE 125
>pdb|1Z10|A Chain A, Crystal Structure Of Human Microsomal P450 2a6 With
Coumarin Bound
pdb|1Z10|B Chain B, Crystal Structure Of Human Microsomal P450 2a6 With
Coumarin Bound
pdb|1Z10|C Chain C, Crystal Structure Of Human Microsomal P450 2a6 With
Coumarin Bound
pdb|1Z10|D Chain D, Crystal Structure Of Human Microsomal P450 2a6 With
Coumarin Bound
pdb|1Z11|A Chain A, Crystal Structure Of Human Microsomal P450 2a6 With
Methoxsalen Bound
pdb|1Z11|B Chain B, Crystal Structure Of Human Microsomal P450 2a6 With
Methoxsalen Bound
pdb|1Z11|C Chain C, Crystal Structure Of Human Microsomal P450 2a6 With
Methoxsalen Bound
pdb|1Z11|D Chain D, Crystal Structure Of Human Microsomal P450 2a6 With
Methoxsalen Bound
pdb|2FDU|A Chain A, Microsomal P450 2a6 With The Inhibitor N,N-Dimethyl(5-
(Pyridin-3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDU|B Chain B, Microsomal P450 2a6 With The Inhibitor N,N-Dimethyl(5-
(Pyridin-3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDU|C Chain C, Microsomal P450 2a6 With The Inhibitor N,N-Dimethyl(5-
(Pyridin-3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDU|D Chain D, Microsomal P450 2a6 With The Inhibitor N,N-Dimethyl(5-
(Pyridin-3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDV|A Chain A, Microsomal P450 2a6 With The Inhibitor
N-Methyl(5-(Pyridin- 3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDV|B Chain B, Microsomal P450 2a6 With The Inhibitor
N-Methyl(5-(Pyridin- 3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDV|C Chain C, Microsomal P450 2a6 With The Inhibitor
N-Methyl(5-(Pyridin- 3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDV|D Chain D, Microsomal P450 2a6 With The Inhibitor
N-Methyl(5-(Pyridin- 3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDW|A Chain A, Crystal Structure Of Human Microsomal P450 2a6 With The
Inhibitor (5-(Pyridin-3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDW|B Chain B, Crystal Structure Of Human Microsomal P450 2a6 With The
Inhibitor (5-(Pyridin-3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDW|C Chain C, Crystal Structure Of Human Microsomal P450 2a6 With The
Inhibitor (5-(Pyridin-3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDW|D Chain D, Crystal Structure Of Human Microsomal P450 2a6 With The
Inhibitor (5-(Pyridin-3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDY|A Chain A, Microsomal P450 2a6 With The Inhibitor Adrithiol Bound
pdb|2FDY|B Chain B, Microsomal P450 2a6 With The Inhibitor Adrithiol Bound
pdb|2FDY|C Chain C, Microsomal P450 2a6 With The Inhibitor Adrithiol Bound
pdb|2FDY|D Chain D, Microsomal P450 2a6 With The Inhibitor Adrithiol Bound
pdb|3T3R|A Chain A, Human Cytochrome P450 2a6 In Complex With Pilocarpine
pdb|3T3R|B Chain B, Human Cytochrome P450 2a6 In Complex With Pilocarpine
pdb|3T3R|C Chain C, Human Cytochrome P450 2a6 In Complex With Pilocarpine
pdb|3T3R|D Chain D, Human Cytochrome P450 2a6 In Complex With Pilocarpine
pdb|4EJJ|A Chain A, Human Cytochrome P450 2a6 In Complex With Nicotine
pdb|4EJJ|B Chain B, Human Cytochrome P450 2a6 In Complex With Nicotine
pdb|4EJJ|C Chain C, Human Cytochrome P450 2a6 In Complex With Nicotine
pdb|4EJJ|D Chain D, Human Cytochrome P450 2a6 In Complex With Nicotine
Length = 476
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 60/125 (48%), Gaps = 4/125 (3%)
Query: 4 SRNNTKLPPGPWGLPFIGTLHQLDVSKPHVLFWELSKKYGPLMSLRLGFSPSLVVSSAKM 63
+ + KLPPGP LPFIG QL+ + + ++S++YGP+ ++ LG +V+
Sbjct: 5 TSSKGKLPPGPTPLPFIGNYLQLNTEQMYNSLMKISERYGPVFTIHLGPRRVVVLCGHDA 64
Query: 64 AKEILKTHDLQFCSRPALVAQQKLSYNGLDLAFSPYDEYWREIRKICAIHLFNSNRGQNF 123
+E L +F R A + G + FS E +++R+ L + G+
Sbjct: 65 VREALVDQAEEFSGR-GEQATFDWVFKGYGVVFS-NGERAKQLRRFSIATLRDFGVGK-- 120
Query: 124 RPIEK 128
R IE+
Sbjct: 121 RGIEE 125
>pdb|3EBS|A Chain A, Human Cytochrome P450 2a6 I208sI300FG301AS369G IN COMPLEX
With Phenacetin
pdb|3EBS|B Chain B, Human Cytochrome P450 2a6 I208sI300FG301AS369G IN COMPLEX
With Phenacetin
pdb|3EBS|C Chain C, Human Cytochrome P450 2a6 I208sI300FG301AS369G IN COMPLEX
With Phenacetin
pdb|3EBS|D Chain D, Human Cytochrome P450 2a6 I208sI300FG301AS369G IN COMPLEX
With Phenacetin
pdb|3T3Q|A Chain A, Human Cytochrome P450 2a6 I208sI300FG301AS369G IN COMPLEX
WITH Pilocarpine
pdb|3T3Q|B Chain B, Human Cytochrome P450 2a6 I208sI300FG301AS369G IN COMPLEX
WITH Pilocarpine
pdb|3T3Q|C Chain C, Human Cytochrome P450 2a6 I208sI300FG301AS369G IN COMPLEX
WITH Pilocarpine
pdb|3T3Q|D Chain D, Human Cytochrome P450 2a6 I208sI300FG301AS369G IN COMPLEX
WITH Pilocarpine
Length = 476
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 60/125 (48%), Gaps = 4/125 (3%)
Query: 4 SRNNTKLPPGPWGLPFIGTLHQLDVSKPHVLFWELSKKYGPLMSLRLGFSPSLVVSSAKM 63
+ + KLPPGP LPFIG QL+ + + ++S++YGP+ ++ LG +V+
Sbjct: 5 TSSKGKLPPGPTPLPFIGNYLQLNTEQMYNSLMKISERYGPVFTIHLGPRRVVVLCGHDA 64
Query: 64 AKEILKTHDLQFCSRPALVAQQKLSYNGLDLAFSPYDEYWREIRKICAIHLFNSNRGQNF 123
+E L +F R A + G + FS E +++R+ L + G+
Sbjct: 65 VREALVDQAEEFSGR-GEQATFDWVFKGYGVVFS-NGERAKQLRRFSIATLRDFGVGK-- 120
Query: 124 RPIEK 128
R IE+
Sbjct: 121 RGIEE 125
>pdb|3QZ1|A Chain A, Crystal Structure Of Bovine Steroid Of 21-Hydroxylase
(P450c21)
pdb|3QZ1|B Chain B, Crystal Structure Of Bovine Steroid Of 21-Hydroxylase
(P450c21)
pdb|3QZ1|C Chain C, Crystal Structure Of Bovine Steroid Of 21-Hydroxylase
(P450c21)
pdb|3QZ1|D Chain D, Crystal Structure Of Bovine Steroid Of 21-Hydroxylase
(P450c21)
Length = 496
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 49/100 (49%), Gaps = 3/100 (3%)
Query: 21 GTLHQLDVSKP-HVLFWELSKKYGPLMSLRLGFSPSLVVSSAKMAKEILKTHDLQFCSRP 79
G LH L + P H+L L++K GP+ LRLG +V++S + +E + + F RP
Sbjct: 36 GFLHLLQPNLPIHLL--SLTQKLGPVYRLRLGLQEVVVLNSKRTIEEAMIRKWVDFAGRP 93
Query: 80 ALVAQQKLSYNGLDLAFSPYDEYWREIRKICAIHLFNSNR 119
+ + + +S D++ Y W+ +K+ L R
Sbjct: 94 QIPSYKLVSQRCQDISLGDYSLLWKAHKKLTRSALLLGTR 133
>pdb|3QM4|A Chain A, Human Cytochrome P450 (Cyp) 2d6 - Prinomastat Complex
pdb|3QM4|B Chain B, Human Cytochrome P450 (Cyp) 2d6 - Prinomastat Complex
pdb|3TBG|A Chain A, Human Cytochrome P450 2d6 With Two Thioridazines Bound In
Active Site
pdb|3TBG|B Chain B, Human Cytochrome P450 2d6 With Two Thioridazines Bound In
Active Site
pdb|3TBG|C Chain C, Human Cytochrome P450 2d6 With Two Thioridazines Bound In
Active Site
pdb|3TBG|D Chain D, Human Cytochrome P450 2d6 With Two Thioridazines Bound In
Active Site
pdb|3TDA|A Chain A, Competitive Replacement Of Thioridazine By Prinomastat In
Crystals Of Cytochrome P450 2d6
pdb|3TDA|B Chain B, Competitive Replacement Of Thioridazine By Prinomastat In
Crystals Of Cytochrome P450 2d6
pdb|3TDA|C Chain C, Competitive Replacement Of Thioridazine By Prinomastat In
Crystals Of Cytochrome P450 2d6
pdb|3TDA|D Chain D, Competitive Replacement Of Thioridazine By Prinomastat In
Crystals Of Cytochrome P450 2d6
Length = 479
Score = 40.8 bits (94), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 46/102 (45%), Gaps = 6/102 (5%)
Query: 25 QLDVSKPHVLFWELSKKYGPLMSLRLGFSPSLVVSSAKMAKEILKTHDLQFCSRPALVAQ 84
+D F +L +++G + SL+L ++P +V++ +E L TH RP +
Sbjct: 26 HVDFQNTPYCFDQLRRRFGDVFSLQLAWTPVVVLNGLAAVREALVTHGEDTADRPPVPIT 85
Query: 85 QKLSYN----GLDLAFSPYDEYWREIRKICAIHLFNSNRGQN 122
Q L + G+ LA Y WRE R+ L N G+
Sbjct: 86 QILGFGPRSQGVFLA--RYGPAWREQRRFSVSTLRNLGLGKK 125
>pdb|2F9Q|A Chain A, Crystal Structure Of Human Cytochrome P450 2d6
pdb|2F9Q|B Chain B, Crystal Structure Of Human Cytochrome P450 2d6
pdb|2F9Q|C Chain C, Crystal Structure Of Human Cytochrome P450 2d6
pdb|2F9Q|D Chain D, Crystal Structure Of Human Cytochrome P450 2d6
Length = 479
Score = 40.8 bits (94), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 46/102 (45%), Gaps = 6/102 (5%)
Query: 25 QLDVSKPHVLFWELSKKYGPLMSLRLGFSPSLVVSSAKMAKEILKTHDLQFCSRPALVAQ 84
+D F +L +++G + SL+L ++P +V++ +E L TH RP +
Sbjct: 26 HVDFQNTPYCFDQLRRRFGDVFSLQLAWTPVVVLNGLAAVREALVTHGEDTADRPPVPIT 85
Query: 85 QKLSYN----GLDLAFSPYDEYWREIRKICAIHLFNSNRGQN 122
Q L + G+ LA Y WRE R+ L N G+
Sbjct: 86 QILGFGPRSQGVFLA--RYGPAWREQRRFSVSTLRNLGLGKK 125
>pdb|3CZH|A Chain A, Crystal Structure Of Cyp2r1 In Complex With Vitamin D2
pdb|3CZH|B Chain B, Crystal Structure Of Cyp2r1 In Complex With Vitamin D2
Length = 481
Score = 37.0 bits (84), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
Query: 31 PHVLFWELSKKYGPLMSLRLGFSPSLVVSSAKMAKEILKTHDLQFCSRPALVAQQKLSYN 90
PHV + S+ YG + SL LG ++V++ + KE L F RP L K++
Sbjct: 36 PHVYMRKQSQVYGEIFSLDLGGISTVVLNGYDVVKECLVHQSEIFADRPCLPLFMKMTKM 95
Query: 91 GLDLAFSPYDEYWREIRKICA 111
G L S Y W + R++
Sbjct: 96 G-GLLNSRYGRGWVDHRRLAV 115
>pdb|3C6G|A Chain A, Crystal Structure Of Cyp2r1 In Complex With Vitamin D3
pdb|3C6G|B Chain B, Crystal Structure Of Cyp2r1 In Complex With Vitamin D3
pdb|3DL9|A Chain A, Crystal Structure Of Cyp2r1 In Complex With
1-Alpha-Hydroxy- Vitamin D2
pdb|3DL9|B Chain B, Crystal Structure Of Cyp2r1 In Complex With
1-Alpha-Hydroxy- Vitamin D2
Length = 479
Score = 36.6 bits (83), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
Query: 31 PHVLFWELSKKYGPLMSLRLGFSPSLVVSSAKMAKEILKTHDLQFCSRPALVAQQKLSYN 90
PHV + S+ YG + SL LG ++V++ + KE L F RP L K++
Sbjct: 36 PHVYMRKQSQVYGEIFSLDLGGISTVVLNGYDVVKECLVHQSEIFADRPCLPLFMKMTKM 95
Query: 91 GLDLAFSPYDEYWREIRKICA 111
G L S Y W + R++
Sbjct: 96 G-GLLNSRYGRGWVDHRRLAV 115
>pdb|1W0E|A Chain A, Crystal Structure Of Human Cytochrome P450 3a4
pdb|1W0F|A Chain A, Crystal Structure Of Human Cytochrome P450 3a4
pdb|1W0G|A Chain A, Crystal Structure Of Human Cytochrome P450 3a4
pdb|2J0D|A Chain A, Crystal Structure Of Human P450 3a4 In Complex With
Erythromycin
pdb|2J0D|B Chain B, Crystal Structure Of Human P450 3a4 In Complex With
Erythromycin
pdb|2V0M|A Chain A, Crystal Structure Of Human P450 3a4 In Complex With
Ketoconazole
pdb|2V0M|B Chain B, Crystal Structure Of Human P450 3a4 In Complex With
Ketoconazole
pdb|2V0M|C Chain C, Crystal Structure Of Human P450 3a4 In Complex With
Ketoconazole
pdb|2V0M|D Chain D, Crystal Structure Of Human P450 3a4 In Complex With
Ketoconazole
pdb|3NXU|A Chain A, Crystal Structure Of Human Cytochrome P4503a4 Bound To An
Inhibitor Ritonavir
pdb|3NXU|B Chain B, Crystal Structure Of Human Cytochrome P4503a4 Bound To An
Inhibitor Ritonavir
Length = 485
Score = 35.0 bits (79), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 47/116 (40%), Gaps = 7/116 (6%)
Query: 12 PGPWGLPFIGTLHQLDVSKPHVLF-WELSKKYGPLMSLRLGFSPSLVVSSAKMAKEILKT 70
PGP LPF+G + L K +F E KKYG + G P L ++ M K +L
Sbjct: 17 PGPTPLPFLGNI--LSYHKGFCMFDMECHKKYGKVWGFYDGQQPVLAITDPDMIKTVLVK 74
Query: 71 HDLQFCSRPALVAQQKLSYNGLDLAFSPYDEYWREIRKICAIHLFNSNRGQNFRPI 126
+ + + +A DE W+ +R + + F S + + PI
Sbjct: 75 ECYSVFTNRRPFGPVGFMKSAISIA---EDEEWKRLRSLLS-PTFTSGKLKEMVPI 126
>pdb|3UA1|A Chain A, Crystal Structure Of The Cytochrome
P4503a4-Bromoergocryptine Complex
pdb|3TJS|A Chain A, Crystal Structure Of The Complex Between Human Cytochrome
P450 3a4 And Desthiazolylmethyloxycarbonyl Ritonavir
Length = 487
Score = 35.0 bits (79), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 47/116 (40%), Gaps = 7/116 (6%)
Query: 12 PGPWGLPFIGTLHQLDVSKPHVLF-WELSKKYGPLMSLRLGFSPSLVVSSAKMAKEILKT 70
PGP LPF+G + L K +F E KKYG + G P L ++ M K +L
Sbjct: 19 PGPTPLPFLGNI--LSYHKGFCMFDMECHKKYGKVWGFYDGQQPVLAITDPDMIKTVLVK 76
Query: 71 HDLQFCSRPALVAQQKLSYNGLDLAFSPYDEYWREIRKICAIHLFNSNRGQNFRPI 126
+ + + +A DE W+ +R + + F S + + PI
Sbjct: 77 ECYSVFTNRRPFGPVGFMKSAISIA---EDEEWKRLRSLLS-PTFTSGKLKEMVPI 128
>pdb|1TQN|A Chain A, Crystal Structure Of Human Microsomal P450 3a4
Length = 486
Score = 35.0 bits (79), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 47/116 (40%), Gaps = 7/116 (6%)
Query: 12 PGPWGLPFIGTLHQLDVSKPHVLF-WELSKKYGPLMSLRLGFSPSLVVSSAKMAKEILKT 70
PGP LPF+G + L K +F E KKYG + G P L ++ M K +L
Sbjct: 18 PGPTPLPFLGNI--LSYHKGFCMFDMECHKKYGKVWGFYDGQQPVLAITDPDMIKTVLVK 75
Query: 71 HDLQFCSRPALVAQQKLSYNGLDLAFSPYDEYWREIRKICAIHLFNSNRGQNFRPI 126
+ + + +A DE W+ +R + + F S + + PI
Sbjct: 76 ECYSVFTNRRPFGPVGFMKSAISIA---EDEEWKRLRSLLS-PTFTSGKLKEMVPI 127
>pdb|3K9V|A Chain A, Crystal Structure Of Rat Mitochondrial P450 24a1 S57d In
Complex With Chaps
pdb|3K9V|B Chain B, Crystal Structure Of Rat Mitochondrial P450 24a1 S57d In
Complex With Chaps
pdb|3K9Y|A Chain A, Crystal Structure Of Rat Mitochondrial P450 24a1 S57d In
Complex With Cymal-5
pdb|3K9Y|B Chain B, Crystal Structure Of Rat Mitochondrial P450 24a1 S57d In
Complex With Cymal-5
Length = 482
Score = 34.7 bits (78), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 5/72 (6%)
Query: 4 SRNNTKLPPGPWGLPFIGTLHQL----DVSKPHVLFWELSKKYGPLMSLRLGFSPSLVVS 59
+RN T LP GP P +G+L ++ + K H E KKYG + ++LG S+ +
Sbjct: 20 TRNVTDLP-GPTNWPLLGSLLEIFWKGGLKKQHDTLAEYHKKYGQIFRMKLGSFDSVHLG 78
Query: 60 SAKMAKEILKTH 71
S + + + +T
Sbjct: 79 SPSLLEALYRTE 90
>pdb|2VE3|A Chain A, Retinoic Acid Bound Cyanobacterial Cyp120a1
pdb|2VE3|B Chain B, Retinoic Acid Bound Cyanobacterial Cyp120a1
pdb|2VE4|A Chain A, Substrate Free Cyanobacterial Cyp120a1
pdb|2VE4|B Chain B, Substrate Free Cyanobacterial Cyp120a1
Length = 444
Score = 30.8 bits (68), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 38/74 (51%), Gaps = 11/74 (14%)
Query: 3 TSRNNTKLPPGPWGLPFIGT----LHQLDVSKPHVLFWELSKKYGPLMSLRLGFSPSLVV 58
T+ N+ +PPG +GLP++G L+ D K + +++GP+ RL F +++
Sbjct: 6 TNLNSLPIPPGDFGLPWLGETLNFLNDGDFGK------KRQQQFGPIFKTRL-FGKNVIF 58
Query: 59 SSAKMAKEILKTHD 72
S +A L T +
Sbjct: 59 ISGALANRFLFTKE 72
>pdb|1FIU|A Chain A, Tetrameric Restriction Endonuclease Ngomiv In Complex With
Cleaved Dna
pdb|1FIU|B Chain B, Tetrameric Restriction Endonuclease Ngomiv In Complex With
Cleaved Dna
pdb|1FIU|C Chain C, Tetrameric Restriction Endonuclease Ngomiv In Complex With
Cleaved Dna
pdb|1FIU|D Chain D, Tetrameric Restriction Endonuclease Ngomiv In Complex With
Cleaved Dna
pdb|4ABT|A Chain A, Crystal Structure Of Type Iif Restriction Endonuclease
Ngomiv With Cognate Uncleaved Dna
pdb|4ABT|B Chain B, Crystal Structure Of Type Iif Restriction Endonuclease
Ngomiv With Cognate Uncleaved Dna
Length = 286
Score = 30.0 bits (66), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 36/176 (20%), Positives = 67/176 (38%), Gaps = 29/176 (16%)
Query: 12 PGPWGLPFIGTLHQLDVSK----PHVLFWELSKKYGPLMSLRLG----FSPSLVVSSAKM 63
PG W + +G+ ++L++++ H+ + + P ++ LG +P ++V+ +
Sbjct: 89 PGDWNVKQVGSRNRLEIARYQQYAHLTALAKAAEENPELAAALGSDYTITPDIIVTRNLI 148
Query: 64 AKEILKTHDLQFCSRPALVAQQKLSYNGLDLAFSPYDEYWREIRKICAIHLFNSNRGQNF 123
A + ++ A A + + L + W S+R QN
Sbjct: 149 ADAEINRNEFLVDENIATYASLRAGNGNMPLLHASISCKW----------TIRSDRAQNA 198
Query: 124 RPIEKMNLIHQQASRPLFVELVLARGYFPFIGWIDKLTGMLQRPQNNFQEIDRVYQ 179
R E +NL+ + R + +V A I I TG EID VY
Sbjct: 199 RS-EGLNLVRNRKGRLPHIVVVTAEPTPSRISSIALGTG----------EIDCVYH 243
>pdb|3ZHP|A Chain A, Human Mst3 (stk24) In Complex With Mo25beta
pdb|3ZHP|B Chain B, Human Mst3 (stk24) In Complex With Mo25beta
Length = 340
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 34/145 (23%), Positives = 59/145 (40%), Gaps = 15/145 (10%)
Query: 29 SKPHVLFWELSKKYGPLMSLRLGFSPSLVVSSAKMAKEILKTHDLQFCSRPALVAQQKLS 88
+ PH+LF L P ++LR G + +AK IL ++ QF R + +
Sbjct: 124 AHPHILFMLLKGYEAPQIALRCGIMLRECIRHEPLAKIILFSN--QF--RDFFKYVELST 179
Query: 89 YNGLDLAFSPYDEYWREIRKICAIHLFNSNRGQNFRPIEKM----NLIHQQASRPLFVEL 144
++ AF+ + + K+ N F EK+ N + ++ S L EL
Sbjct: 180 FDIASDAFATFKDLLTR-HKVLVADFLEQNYDTIFEDYEKLLQSENYVTKRQSLKLLGEL 238
Query: 145 VLARGYFPFIGWIDKLTGMLQRPQN 169
+L R F +T + +P+N
Sbjct: 239 ILDRHNFAI------MTKYISKPEN 257
>pdb|4F96|B Chain B, Crystal Structure Of Vlde, The Pseudo-Glycosyltransferase,
In Complex With Gdp
pdb|4F96|A Chain A, Crystal Structure Of Vlde, The Pseudo-Glycosyltransferase,
In Complex With Gdp
pdb|4F97|A Chain A, Crystal Structure Of Vlde, The Pseudo-Glycosyltransferase,
In Complex With Gdp And Validoxylamine A 7'-Phosphate
pdb|4F97|B Chain B, Crystal Structure Of Vlde, The Pseudo-Glycosyltransferase,
In Complex With Gdp And Validoxylamine A 7'-Phosphate
pdb|4F9F|A Chain A, Crystal Structure Of Vlde, The Pseudo-Glycosyltransferase,
In Complex With Gdp And Trehalose
pdb|4F9F|B Chain B, Crystal Structure Of Vlde, The Pseudo-Glycosyltransferase,
In Complex With Gdp And Trehalose
pdb|4F9F|C Chain C, Crystal Structure Of Vlde, The Pseudo-Glycosyltransferase,
In Complex With Gdp And Trehalose
pdb|4F9F|D Chain D, Crystal Structure Of Vlde, The Pseudo-Glycosyltransferase,
In Complex With Gdp And Trehalose
pdb|4F9F|E Chain E, Crystal Structure Of Vlde, The Pseudo-Glycosyltransferase,
In Complex With Gdp And Trehalose
pdb|4F9F|F Chain F, Crystal Structure Of Vlde, The Pseudo-Glycosyltransferase,
In Complex With Gdp And Trehalose
pdb|3VDM|A Chain A, Crystal Structure Of Vlde, The Pseudo-Glycosyltransferase
Which Catalyzes Non-Glycosidic C-N Coupling In
Validamycin A Biosynthesis
pdb|3VDM|B Chain B, Crystal Structure Of Vlde, The Pseudo-Glycosyltransferase
Which Catalyzes Non-Glycosidic C-N Coupling In
Validamycin A Biosynthesis
pdb|3VDN|B Chain B, Crystal Structure Of Vlde, The Pseudo-Glycosyltransferase,
In Complex With Gdp
Length = 497
Score = 29.3 bits (64), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Query: 52 FSPSLVVSSAKMAKEILKTHDLQFCSRPALVAQQKLSYNGLDLAFSPY--DEYWR 104
F+ +++ SSA+ A + HD Q PAL+ +Q+ L P+ +YWR
Sbjct: 138 FADAILKSSAQSADPVYLVHDYQLVGVPALLREQRPDAPILLFVHIPWPSADYWR 192
>pdb|3T5T|A Chain A, Vall From Streptomyces Hygroscopicus In Apo Form
pdb|3T5T|B Chain B, Vall From Streptomyces Hygroscopicus In Apo Form
Length = 496
Score = 29.3 bits (64), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Query: 52 FSPSLVVSSAKMAKEILKTHDLQFCSRPALVAQQKLSYNGLDLAFSPY--DEYWR 104
F+ +++ SSA+ A + HD Q PAL+ +Q+ L P+ +YWR
Sbjct: 137 FADAILKSSAQSADPVYLVHDYQLVGVPALLREQRPDAPILLFVHIPWPSADYWR 191
>pdb|3T7D|A Chain A, Vall From Streptomyces Hygroscopicus In Complex With
Trehalose
pdb|3T7D|B Chain B, Vall From Streptomyces Hygroscopicus In Complex With
Trehalose
Length = 497
Score = 28.9 bits (63), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Query: 52 FSPSLVVSSAKMAKEILKTHDLQFCSRPALVAQQKLSYNGLDLAFSPY--DEYWR 104
F+ +++ SSA+ A + HD Q PAL+ +Q+ L P+ +YWR
Sbjct: 138 FADAILKSSAQSADPVYLVHDYQLVGVPALLREQRPDAPILLFVHIPWPSADYWR 192
>pdb|3OGU|A Chain A, Dna Polymerase Beta Mutant 5p20 Complexed With 6bp Of Dna
Length = 335
Score = 28.5 bits (62), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 22/96 (22%), Positives = 39/96 (40%), Gaps = 10/96 (10%)
Query: 69 KTHDLQFCSRPALVAQQKLSYNGLDLAFSPYDEYWREIRKICAIHLFNSNRGQNFRPIEK 128
KT + C P+ +++ + +D+ P D+Y+ + +FN N +EK
Sbjct: 232 KTKFMGVCQLPSKNDEKEYPHRRIDIRLIPKDQYYCGMLYFTGSDIFNKN--MRAHALEK 289
Query: 129 MNLIHQQASRPLFVELVLA--------RGYFPFIGW 156
I++ RPL V V + F +I W
Sbjct: 290 GFTINEYTIRPLGVTGVAGEPLPVDSEKDIFDYIQW 325
>pdb|3RH5|A Chain A, Dna Polymerase Beta Mutant (Y271) With A
Dideoxy-Terminated Primer With An Incoming
Deoxynucleotide (Dctp)
pdb|3RH6|A Chain A, Dna Polymerase Beta Mutant (Y271) With A
Dideoxy-Terminated Primer With An Incoming
Ribonucleotide (Rctp)
Length = 335
Score = 28.5 bits (62), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 20/92 (21%), Positives = 37/92 (40%), Gaps = 10/92 (10%)
Query: 73 LQFCSRPALVAQQKLSYNGLDLAFSPYDEYWREIRKICAIHLFNSNRGQNFRPIEKMNLI 132
+ C P+ +++ + +D+ P D+Y+ + +FN N +EK I
Sbjct: 236 MGVCQLPSKNDEKEYPHRRIDIRLIPKDQYYCGVLAFTGSDIFNKN--MRAHALEKGFTI 293
Query: 133 HQQASRPLFVELVLA--------RGYFPFIGW 156
++ RPL V V + F +I W
Sbjct: 294 NEYTIRPLGVTGVAGEPLPVDSEKDIFDYIQW 325
>pdb|1N4H|A Chain A, Characterization Of Ligands For The Orphan Nuclear
Receptor Rorbeta
Length = 259
Score = 28.1 bits (61), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 167 PQNNFQEIDRVYQELIDKHLDPNRAKIEQLQQ 198
P EIDR+ Q +I HL+ + +E+L Q
Sbjct: 5 PGITMSEIDRIAQNIIKSHLETCQYTMEELHQ 36
>pdb|1K4W|A Chain A, X-Ray Structure Of The Orphan Nuclear Receptor Ror Beta
Ligand-Binding Domain In The Active Conformation
Length = 252
Score = 28.1 bits (61), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 167 PQNNFQEIDRVYQELIDKHLDPNRAKIEQLQQ 198
P EIDR+ Q +I HL+ + +E+L Q
Sbjct: 5 PGITMSEIDRIAQNIIKSHLETCQYTMEELHQ 36
>pdb|4F5N|A Chain A, Open Ternary Complex Of R283k Dna Polymerase Beta With A
Metal Free Dctp Analog
pdb|4F5O|A Chain A, Open Ternary Complex Of R283k Dna Polymerase Beta With A
One Metal Bound Dctp Analog
pdb|4F5P|A Chain A, Open Ternary Mismatch Complex Of R283k Dna Polymerase Beta
With A Datp Analog
pdb|4F5Q|A Chain A, Closed Ternary Complex Of R283k Dna Polymerase Beta
pdb|4F5R|A Chain A, Open And Closed Ternary Complex Of R283k Dna Polymerase
Beta With A Dctp Analog In The Same Asymmetric Unit
pdb|4F5R|B Chain B, Open And Closed Ternary Complex Of R283k Dna Polymerase
Beta With A Dctp Analog In The Same Asymmetric Unit
pdb|4GXI|A Chain A, R283k Dna Polymerase Beta Binary Complex With A Templating
8og
pdb|4GXJ|A Chain A, R283k Dna Polymerase Beta Ternary Complex With A
Templating 8og And Incoming Dctp Analog
pdb|4GXK|A Chain A, R283k Dna Polymerase Beta Ternary Complex With A
Templating 8og And Incoming Datp Analog
Length = 335
Score = 27.7 bits (60), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 20/92 (21%), Positives = 37/92 (40%), Gaps = 10/92 (10%)
Query: 73 LQFCSRPALVAQQKLSYNGLDLAFSPYDEYWREIRKICAIHLFNSNRGQNFRPIEKMNLI 132
+ C P+ +++ + +D+ P D+Y+ + +FN N +EK I
Sbjct: 236 MGVCQLPSKNDEKEYPHRRIDIRLIPKDQYYCGVLYFTGSDIFNKN--MKAHALEKGFTI 293
Query: 133 HQQASRPLFVELVLA--------RGYFPFIGW 156
++ RPL V V + F +I W
Sbjct: 294 NEYTIRPLGVTGVAGEPLPVDSEKDIFDYIQW 325
>pdb|1KWH|A Chain A, Structure Analysis Algq2, A
Macromolecule(Alginate)-Binding Periplasmic Protein Of
Sphingomonas Sp. A1.
pdb|1J1N|A Chain A, Structure Analysis Of Algq2, A
Macromolecule(alginate)-binding Periplasmic Protein Of
Sphingomonas Sp. A1., Complexed With An Alginate
Tetrasaccharide
pdb|1J1N|B Chain B, Structure Analysis Of Algq2, A
Macromolecule(alginate)-binding Periplasmic Protein Of
Sphingomonas Sp. A1., Complexed With An Alginate
Tetrasaccharide
Length = 492
Score = 27.7 bits (60), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 27/52 (51%), Gaps = 7/52 (13%)
Query: 139 PLFVELVLARGYFPFIGWIDKLTGMLQRPQNNFQEIDRVYQELID-KHLDPN 189
P + V+ARGYF W+ KL L+ PQN ID +Y L K DPN
Sbjct: 128 PYVPDGVVARGYFIREDWLKKLN--LKPPQN----IDELYTVLKAFKEKDPN 173
>pdb|3GDX|A Chain A, Dna Polymerase Beta With A Gapped Dnd Substrate And
Dtmp(Cf2)pp
Length = 326
Score = 27.7 bits (60), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 20/92 (21%), Positives = 37/92 (40%), Gaps = 10/92 (10%)
Query: 73 LQFCSRPALVAQQKLSYNGLDLAFSPYDEYWREIRKICAIHLFNSNRGQNFRPIEKMNLI 132
+ C P+ +++ + +D+ P D+Y+ + +FN N +EK I
Sbjct: 227 MGVCQLPSKNDEKEYPHRRIDIRLIPKDQYYCGVLYFTGSDIFNKN--MRAHALEKGFTI 284
Query: 133 HQQASRPLFVELVLA--------RGYFPFIGW 156
++ RPL V V + F +I W
Sbjct: 285 NEYTIRPLGVTGVAGEPLPVDSEKDIFDYIQW 316
>pdb|9ICG|A Chain A, Dna Polymerase Beta (pol B) (e.c.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Dctp
(1 Millimolar) And Zncl2 (1 Millimolar)
pdb|9ICH|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Dgtp
(1 Millimolar) And Zncl2 (1 Millimolar)
pdb|9ICI|A Chain A, Dna Polymerase Beta (pol B) (e.c.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Dttp
(1 Millimolar) And Zncl2 (1 Millimolar)
pdb|9ICJ|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna
pdb|9ICK|A Chain A, Dna Polymerase Beta (E.C.2.7.7.7)DNA COMPLEX, SOAKED IN
The Presence Of Artificial Mother Liquor
pdb|9ICL|A Chain A, Dna Polymerase Beta (E.C.2.7.7.7)DNA COMPLEX, SOAKED IN
The Presence Of Pyrophosphate And Mncl2
pdb|9ICM|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Six Base Pairs Of Double Stranded Dna (No 5'-Phosphate)
pdb|9ICN|A Chain A, Dna Polymerase Beta (E.C.2.7.7.7)DNA COMPLEX + 2',3'-
Dideoxycytidine-5'-Triphosphate, Soaked In The Presence
Of Ddctp And Mgcl2
pdb|9ICO|A Chain A, Dna Polymerase Beta (E.C.2.7.7.7)DNA COMPLEX, SOAKED IN
The Presence Of Dttp And Mgcl2
pdb|9ICP|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Six Base Pairs Of Dna; Soaked In The Presence Of
Pyrophosphate (1 Millimolar) And Mgcl2 (5 Millimolar)
pdb|9ICQ|A Chain A, Dna Polymerase Beta (pol B) (e.c.2.7.7.7) Complexed With
Six Base Pairs Of Dna; Soaked In The Presence Of Datp (1
Millimolar) And Mncl2 (5 Millimolar)
pdb|9ICR|A Chain A, Dna Polymerase Beta (E.C.2.7.7.7)DNA COMPLEX + 2'-
Deoxycytidine-5'-Triphosphate, Soaked In The Presence Of
Dctp And Mncl2
pdb|9ICS|A Chain A, Dna Polymerase Beta (E.C.2.7.7.7)DNA COMPLEX + 2',3'-
Dideoxycytidine-5'-Triphosphate, Soaked In The Presence
Of Ddctp And Mncl2
pdb|9ICT|A Chain A, Dna Polymerase Beta (E.C.2.7.7.7)DNA COMPLEX + 2'-
Deoxyguanosine-5'-Triphosphate, Soaked In The Presence
Of Dgtp And Mncl2
pdb|9ICU|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Six Base Pairs Of Dna; Soaked In The Presence Of Dttp (1
Millimolar) And Mncl2 (5 Millimolar)
pdb|9ICV|A Chain A, Dna Polymerase Beta (e.c.2.7.7.7)/dna Complex + 2'-
Deoxyadenosine-5'-triphosphate, Soaked In The Presence
Of Datp And Zncl2
pdb|9ICW|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Six Base Pairs Of Dna; Native Structure
pdb|9ICX|A Chain A, Dna Polymerase Beta (pol B) (e.c.2.7.7.7) Complexed With
Six Base Pairs Of Dna (non Gapped Dna Only)
pdb|9ICY|A Chain A, Dna Polymerase Beta (E.C.2.7.7.7) Complexed With Seven
Base Pairs Of Dna (Non Gapped Dna Only)
pdb|8ICB|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of
Artificial Mother Liquor
pdb|8ICC|A Chain A, Dna Polymerase Beta (pol B) (e.c.2.7.7.7) Complexed With
Seven Base Pairs Of Dna (no 5'-phosphate)
pdb|8ICE|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Datp
(1 Millimolar) And Cdcl2 (1 Millimolar)
pdb|8ICF|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Datp
(10 Millimolar) And Mgcl2 (50 Millimolar)
pdb|8ICG|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Datp
(1 Millimolar) And Mgcl2 (5 Millimolar)
pdb|8ICH|A Chain A, Dna Polymerase Beta (pol B) (e.c.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Dctp
(1 Millimolar) And Mgcl2 (5 Millimolar)
pdb|8ICI|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Dgtp
(1 Millimolar) And Mgcl2 (5 Millimolar)
pdb|8ICJ|A Chain A, Dna Polymerase Beta (E.C.2.7.7.7)DNA COMPLEX + THYMIDINE-
5'-Triphosphate, Soaked In The Presence Of Dttp And
Mgcl2
pdb|8ICK|A Chain A, Dna Polymerase Beta (pol B) (e.c.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Datp
(1 Millimolar), Mgcl2 (5 Millimolar), And Mncl2 (5
Millimolar)
pdb|8ICL|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Datp
(1 Millimolar) And Nicl2 (5 Millimolar)
pdb|8ICM|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Datp
(1 Millimolar), Mncl2 (5 Millimolar), And Ammonium
Sulfate (75 Millimolar)
pdb|8ICN|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Atp
(1 Millimolar) And Mncl2 (5 Millimolar)
pdb|8ICO|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of
Azt-Tp (1 Millimolar) And Mncl2 (5 Millimolar)
pdb|8ICP|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Datp
(1 Millimolar) And Mncl2 (5 Millimolar)
pdb|8ICQ|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Of
Datp (0.1 Millimolar) And Mncl2 (0.5 Millimolar)
pdb|8ICR|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Datp
(1 Millimolar) And Mncl2 (5 Millimolar)
pdb|8ICS|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Dctp
(1 Millimolar) And Mncl2 (5 Millimolar)
pdb|8ICT|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Dctp
(1 Millimolar) And Mncl2 (5 Millimolar)
pdb|8ICU|A Chain A, Dna Polymerase Beta (pol B) (e.c.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Ddatp
(1 Millimolar) And Mncl2 (5 Millimolar)
pdb|8ICV|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Dgtp
(1 Millimolar) And Mncl2 (5 Millimolar)
pdb|8ICW|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Dttp
(1 Millimolar) And Mncl2 (5 Millimolar)
pdb|8ICX|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Dttp
(1 Millimolar) And Mncl2 (5 Millimolar)
pdb|8ICY|A Chain A, Dna Polymerase Beta (E.C.2.7.7.7)DNA COMPLEX + THYMIDINE-
5'-Triphosphate, Soaked In The Presence Of Dttp And
Mncl2
pdb|8ICZ|A Chain A, Dna Polymerase Beta (pol B) (e.c.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Of
Datp (1 Millimolar), Mncl2 (5 Millimolar), And Lithium
Sulfate (75 Millimolar)
pdb|9ICA|A Chain A, Dna Polymerase Beta (E.C.2.7.7.7)DNA COMPLEX + 2'-
Deoxyadenosine-5'-O-(1-Thiotriphosphate), Soaked In The
Presence Of Datp(Alpha)s And Mncl2
pdb|9ICB|A Chain A, Dna Polymerase Beta (E.C.2.7.7.7)DNA COMPLEX + 2'-
Deoxyadenosine-5'-Triphosphate, Soaked In The Presence
Of Datp And Cocl2
pdb|9ICC|A Chain A, Dna Polymerase Beta (e.c.2.7.7.7)/dna Complex + 2'-
Deoxyadenosine-5'-triphosphate, Soaked In The Presence
Of Datp And Crcl3
pdb|9ICE|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Datp
(1 Millimolar) And Cucl2 (0.1 Millimolar)
pdb|9ICF|A Chain A, Dna Polymerase Beta (E.C.2.7.7.7)DNA COMPLEX + 2'-
Deoxyadenosine-5'-Triphosphate, Soaked In The Presence
Of Datp And Zncl2
pdb|1ZQQ|A Chain A, Dna Polymerase Beta (pol B) (e.c.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Mncl2
(15 Millimolar) And Nacl (15 Millimolar)
pdb|1ZQR|A Chain A, Dna Polymerase Beta (E.C.2.7.7.7)DNA COMPLEX, SOAKED IN
The Presence Of Nicl2
pdb|1ZQS|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Tlcl
(0.5 Millimolar)
pdb|1ZQT|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Datp
(0.01 Millimolar) And Zncl2 (0.02 Millimolar)
pdb|7ICE|A Chain A, Dna Polymerase Beta (E.C.2.7.7.7)DNA COMPLEX, SOAKED IN
The Presence Of Cacl2
pdb|7ICF|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Six Base Pairs Of Dna; Soaked In The Presence Of Cdcl2
(0.1 Millimolar) (Four-Day Soak)
pdb|7ICG|A Chain A, Dna Polymerase Beta (e.c.2.7.7.7)/dna Complex, Soaked In
The Presence Of Cdcl2
pdb|7ICH|A Chain A, Dna Polymerase Beta (E.C.2.7.7.7)DNA COMPLEX, SOAKED IN
The Presence Of Cocl2
pdb|7ICI|A Chain A, Dna Polymerase Beta (pol B) (e.c.2.7.7.7) Complexed With
Six Base Pairs Of Dna; Soaked In The Presence Of Crcl3
(0.1 Millimolar)
pdb|7ICJ|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Six Base Pairs Of Dna; Soaked In The Presence Of Cucl2
(0.1 Millimolar)
pdb|7ICK|A Chain A, Dna Polymerase Beta (E.C.2.7.7.7)DNA COMPLEX, SOAKED IN
The Presence Of Mgcl2
pdb|7ICL|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Six Base Pairs Of Dna; Soaked In The Presence Of Mncl2
(0.1 Millimolar)
pdb|7ICM|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Six Base Pairs Of Dna; Soaked In The Presence Of Mncl2
(1.0 Millimolar)
pdb|7ICN|A Chain A, Dna Polymerase Beta (e.c.2.7.7.7)/dna Complex, Soaked In
The Presence Of Nicl2
pdb|7ICO|A Chain A, Dna Polymerase Beta (E.C.2.7.7.7)DNA COMPLEX, SOAKED IN
The Presence Of Zncl2
pdb|7ICP|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Six Base Pairs Of Dna; Soaked In The Presence Of Zncl2
(0.01 Millimolar)
pdb|7ICQ|A Chain A, Dna Polymerase Beta (E.C.2.7.7.7)DNA COMPLEX, SOAKED IN
The Presence Of Zncl2
pdb|7ICR|A Chain A, Dna Polymerase Beta (e.c.2.7.7.7)/dna Complex, Soaked In
The Presence Of Zncl2
pdb|7ICS|A Chain A, Dna Polymerase Beta (E.C.2.7.7.7)DNA COMPLEX, SOAKED IN
The Presence Of Zncl2
pdb|7ICT|A Chain A, Dna Polymerase Beta (E.C.2.7.7.7)DNA COMPLEX, SOAKED IN
The Presence Of Zncl2 And Mgcl2
pdb|7ICU|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Six Base Pairs Of Dna; Soaked In The Presence Of Cdcl2
(0.1 Millimolar)
pdb|7ICV|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Six Base Pairs Of Dna; Soaked In The Presence Of Mncl2
(0.1 Millimolar) And In The Absence Of Nacl
pdb|8ICA|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Datp
(1 Millimolar) And Cacl2 (5 Millimolar)
pdb|1ZQA|A Chain A, Dna Polymerase Beta (pol B) (e.c.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Kcl
(150 Millimolar) At Ph 7.5
pdb|1ZQB|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Bacl2
(150 Millimolar)
pdb|1ZQC|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Cacl2
(15 Millimolar)
pdb|1ZQD|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Cacl2
(150 Millimolar)
pdb|1ZQE|A Chain A, Dna Polymerase Beta (pol B) (e.c.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Crcl3
(saturated Solution)
pdb|1ZQF|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Cscl
(150 Millimolar)
pdb|1ZQG|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of A
Sodium-Free Artificial Mother Liquor At Ph 6.5
pdb|1ZQH|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of A
Sodium-Free Artificial Mother Liquor At Ph 7.5
pdb|1ZQI|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Kcl
(150 Millimolar)
pdb|1ZQJ|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Cacl2
(15 Millimolar) And Mgcl2 (15 Millimolar)
pdb|1ZQK|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Kcl
(75 Millimolar) And Mgcl2 (75 Millimolar)
pdb|1ZQL|A Chain A, Dna Polymerase Beta (pol B) (e.c.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Mncl2
(15 Millimolar) And Mgcl2 (15 Millimolar)
pdb|1ZQM|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Mncl2
(15 Millimolar)
pdb|1ZQN|A Chain A, Dna Polymerase Beta (pol B) (e.c.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Bacl2
(15 Millimolar) And Nacl (15 Millimolar)
pdb|1ZQO|A Chain A, Dna Polymerase Beta (pol B) (e.c.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Cacl2
(15 Millimolar) And Nacl (15 Millimolar)
pdb|1ZQP|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Kcl
(75 Millimolar) And Nacl (75 Millimolar)
pdb|1BPX|A Chain A, Dna Polymerase BetaDNA COMPLEX
pdb|1BPY|A Chain A, Human Dna Polymerase Beta Complexed With Gapped Dna And
Ddctp
pdb|1BPZ|A Chain A, Human Dna Polymerase Beta Complexed With Nicked Dna
pdb|1MQ2|A Chain A, Human Dna Polymerase Beta Complexed With Gapped Dna
Containing An 8-Oxo-7,8-Dihydro-Guanine And Damp
pdb|1MQ3|A Chain A, Human Dna Polymerase Beta Complexed With Gapped Dna
Containing An 8-Oxo-7,8-Dihydro-Guanine Template Paired
With Dctp
pdb|1TV9|A Chain A, Human Dna Polymerase Beta Complexed With Nicked Dna
Containing A Mismatched Template Adenine And Incoming
Cytidine
pdb|1TVA|A Chain A, Human Dna Polymerase Beta Complexed With Nicked Dna
Containing A Mismatched Template Thymidine And Incoming
Cytidine
pdb|1ZJM|A Chain A, Human Dna Polymerase Beta Complexed With Dna Containing An
A-A Mismatched Primer Terminus
pdb|1ZJN|A Chain A, Human Dna Polymerase Beta Complexed With Dna Containing An
A-A Mismatched Primer Terminus With Dgtp
pdb|2FMP|A Chain A, Dna Polymerase Beta With A Terminated Gapped Dna Substrate
And Ddctp With Sodium In The Catalytic Site
pdb|2FMQ|A Chain A, Sodium In Active Site Of Dna Polymerase Beta
pdb|2FMS|A Chain A, Dna Polymerase Beta With A Gapped Dna Substrate And
Dumpnpp With Magnesium In The Catalytic Site
pdb|2I9G|A Chain A, Dna Polymerase Beta With A Benzo[c]phenanthrene Diol
Epoxide Adducted Guanine Base
pdb|2ISO|A Chain A, Ternary Complex Of Dna Polymerase Beta With A Dideoxy
Terminated Primer And 2'-Deoxyguanosine 5'-Beta, Gamma-
Difluoromethylene Triphosphate
pdb|2ISP|A Chain A, Ternary Complex Of Dna Polymerase Beta With A Dideoxy
Terminated Primer And 2'-Deoxyguanosine 5'-Beta, Gamma-
Methylene Triphosphate
pdb|2P66|A Chain A, Human Dna Polymerase Beta Complexed With Tetrahydrofuran
(abasic Site) Containing Dna
pdb|2PXI|A Chain A, Ternary Complex Of Dna Polymerase Beta With A Dideoxy
Terminated Primer And 2'-Deoxyguanosine 5'-Beta, Gamma-
Monofluoromethylene Triphosphate
pdb|3C2K|A Chain A, Dna Polymerase Beta With A Gapped Dna Substrate And
Dumpnpp With Manganese In The Active Site
pdb|3C2L|A Chain A, Ternary Complex Of Dna Polymerase Beta With A C:dapcpp
Mismatch In The Active Site
pdb|3C2M|A Chain A, Ternary Complex Of Dna Polymerase Beta With A G:dapcpp
Mismatch In The Active Site
pdb|3ISB|A Chain A, Binary Complex Of Human Dna Polymerase Beta With A Gapped
Dna
pdb|3ISC|A Chain A, Binary Complex Of Human Dna Polymerase Beta With An Abasic
Site (Thf) In The Gapped Dna
pdb|3ISD|A Chain A, Ternary Complex Of Human Dna Polymerase Beta With An
Abasic Site (Thf): Dapcpp Mismatch
pdb|3JPN|A Chain A, Ternary Complex Of Dna Polymerase Beta With A Dideoxy
Termin Primer And 2'-Deoxyguanosine 5'-Beta,
Gamma-Dichloro Methyl Triphosphate
pdb|3JPO|A Chain A, Ternary Complex Of Dna Polymerase Beta With A Dideoxy
Termin Primer And 2'-Deoxyguanosine 5'-Beta,
Gamma-Monochloromethy Triphosphate
pdb|3JPP|A Chain A, Ternary Complex Of Dna Polymerase Beta With A Dideoxy
Termin Primer And 2'-Deoxyguanosine 5'-Beta,
Gamma-Monomethyl Meth Triphosphate
pdb|3JPQ|A Chain A, Ternary Complex Of Dna Polymerase Beta With A Dideoxy
Termin Primer And 2'-Deoxyguanosine 5'-Beta,
Gamma-Monobromo Methy Triphosphate
pdb|3JPR|A Chain A, Ternary Complex Of Dna Polymerase Beta With A Dideoxy
Termin Primer And 2'-Deoxyguanosine 5'-Beta,
Gamma-Dimethyl Methyl Triphosphate
pdb|3JPS|A Chain A, Ternary Complex Of Dna Polymerase Beta With A Dideoxy
Termin Primer And 2'-Deoxyguanosine 5'-Beta,
Gamma-Fluoro Methyl M Triphosphate
pdb|3JPT|A Chain A, Ternary Complex Of Dna Polymerase Beta With A Dideoxy
Termin Primer And 2'-Deoxyguanosine 5'-Beta,
Gamma-Fluoro Chloro M Triphosphate
pdb|3MBY|A Chain A, Ternary Complex Of Dna Polymerase Beta With Template Base
A And 8oxodgtp In The Active Site With A Dideoxy
Terminated Primer
pdb|3LK9|A Chain A, Dna Polymerase Beta With A Gapped Dna Substrate And
Dtmp(Cf2)p(Cf2)p
pdb|3RH4|A Chain A, Dna Polymerase Beta With A Dideoxy-Terminated Primer With
An Incoming Ribonucleotide (Rctp)
pdb|3RJE|A Chain A, Ternary Complex Of Dna Polymerase Beta With A Gapped Dna
Containing 8odg At Template Position
pdb|3RJF|A Chain A, Ternary Complex Of Dna Polymerase Beta With A Gapped Dna
Containing (Syn)8odg At Template Position Paired With
Non-Hydrolyzable Datp Analog (Dapcpp)
pdb|3RJG|A Chain A, Binary Complex Of Dna Polymerase Beta With A Gapped Dna
Containing 8odg:da Base-Pair At Primer Terminus
pdb|3RJH|A Chain A, Ternary Complex Of Dna Polymerase Beta With A Gapped Dna
Containing (Syn)8odg:da At Primer Terminus And
Dg:dcmp(Cf2)ppin The Active Site
pdb|3RJI|A Chain A, Ternary Complex Of Dna Polymerase Beta With A Gapped Dna
Containing 8odg At Template Position Paired With
Non-Hydrolyzable Dctp Analog (Dcmp(Cf2)pp)
pdb|3RJJ|A Chain A, Ternary Complex Crystal Structure Of Dna Polymerase Beta
With Template 8odg Provides Insight Into Mutagenic
Lesion Bypass
pdb|3RJK|A Chain A, Ternary Complex Of Dna Polymerase Beta With A Gapped Dna
Containing 8odg:dc Base Pair At Primer Terminus And
Dg:dcmp(Cf2)pp In The Active Site
pdb|3TFR|A Chain A, Ternary Complex Structure Of Dna Polymerase Beta With A
Gapped Dna Substrate And A, B Damp(Cf2)pp In The Active
Site
pdb|3TFS|A Chain A, Ternary Complex Structure Of Dna Polymerase Beta With A
Gapped Dna Substrate And A, B Damp(Cfh)pp In The Active
Site: Stereoselective Binding Of (S) Isomer
pdb|4DO9|A Chain A, Ternary Complex Of Dna Polymerase Beta With A Dideoxy
Terminated Primer And 2'-Deoxyguanosine 5'-Beta,
Gamma-Monofluoromethylene Triphosphate: Stereoselective
Binding Of R-Isomer
pdb|4DOA|A Chain A, Ternary Complex Of Dna Polymerase Beta With A Dideoxy
Terminated Primer And 2'-Deoxyguanosine 5'-Beta,
Gamma-Monofluoromethylene Triphosphate: Non-Interactive
Binding Of S-Isomer
pdb|4DOB|A Chain A, Ternary Complex Of Dna Polymerase Beta With A Dideoxy
Terminated Primer And 2'-Deoxyguanosine 5'-Beta,
Gamma-Monochlororomethylene Triphosphate:
Stereoselective Binding Of R-Isomer
pdb|4DOC|A Chain A, Ternary Complex Of Dna Polymerase Beta With A Dideoxy
Terminated Primer And 2'-Deoxyguanosine 5'-Beta,
Gamma-Monochlororomethylene Triphosphate:binding Of
S-Isomer
Length = 335
Score = 27.7 bits (60), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 20/92 (21%), Positives = 37/92 (40%), Gaps = 10/92 (10%)
Query: 73 LQFCSRPALVAQQKLSYNGLDLAFSPYDEYWREIRKICAIHLFNSNRGQNFRPIEKMNLI 132
+ C P+ +++ + +D+ P D+Y+ + +FN N +EK I
Sbjct: 236 MGVCQLPSKNDEKEYPHRRIDIRLIPKDQYYCGVLYFTGSDIFNKN--MRAHALEKGFTI 293
Query: 133 HQQASRPLFVELVLA--------RGYFPFIGW 156
++ RPL V V + F +I W
Sbjct: 294 NEYTIRPLGVTGVAGEPLPVDSEKDIFDYIQW 325
>pdb|3IBD|A Chain A, Crystal Structure Of A Cytochrome P450 2b6 Genetic Variant
In Complex With The Inhibitor
4-(4-Chlorophenyl)imidazole
pdb|3QOA|A Chain A, Crystal Structure Of A Human Cytochrome P450 2b6
(Y226hK262R) IN Complex With The Inhibitor
4-Benzylpyridine.
pdb|3QU8|A Chain A, Crystal Structure Of A Human Cytochrome P450 2b6
(Y226hK262R) IN Complex With The Inhibitor
4-(4-Nitrobenzyl)pyridine.
pdb|3QU8|B Chain B, Crystal Structure Of A Human Cytochrome P450 2b6
(Y226hK262R) IN Complex With The Inhibitor
4-(4-Nitrobenzyl)pyridine.
pdb|3QU8|C Chain C, Crystal Structure Of A Human Cytochrome P450 2b6
(Y226hK262R) IN Complex With The Inhibitor
4-(4-Nitrobenzyl)pyridine.
pdb|3QU8|D Chain D, Crystal Structure Of A Human Cytochrome P450 2b6
(Y226hK262R) IN Complex With The Inhibitor
4-(4-Nitrobenzyl)pyridine.
pdb|3QU8|E Chain E, Crystal Structure Of A Human Cytochrome P450 2b6
(Y226hK262R) IN Complex With The Inhibitor
4-(4-Nitrobenzyl)pyridine.
pdb|3QU8|F Chain F, Crystal Structure Of A Human Cytochrome P450 2b6
(Y226hK262R) IN Complex With The Inhibitor
4-(4-Nitrobenzyl)pyridine.
pdb|3UA5|A Chain A, Crystal Structure Of P450 2b6 (Y226hK262R) IN COMPLEX WITH
TWO Molecules Of Amlodipine
pdb|3UA5|B Chain B, Crystal Structure Of P450 2b6 (Y226hK262R) IN COMPLEX WITH
TWO Molecules Of Amlodipine
Length = 476
Score = 27.7 bits (60), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 44/101 (43%), Gaps = 13/101 (12%)
Query: 109 ICAIHLFNSNRGQNFRPIEKMNLIHQQASRPLFVELVLARGYFPFIGWIDKLTGMLQRPQ 168
IC+I Q+ ++ +NL +Q S + V + + F G++ G ++
Sbjct: 160 ICSIVFGKRFHYQDQEFLKMLNLFYQTFS---LISSVFGQLFELFSGFLKHFPGAHRQVY 216
Query: 169 NNFQEIDRVYQELIDKH---LDPNRAKIEQLQQEDVIDVLL 206
N QEI+ ++KH LDP+ + D+ID L
Sbjct: 217 KNLQEINAYIGHSVEKHRETLDPSAPR-------DLIDTYL 250
>pdb|2VAN|A Chain A, Nucleotidyl Transfer Mechanism Of Mismatched Dntp
Incorporation By Dna Polymerase B By Structural And
Kinetic Analyses
Length = 245
Score = 27.3 bits (59), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 21/96 (21%), Positives = 38/96 (39%), Gaps = 10/96 (10%)
Query: 69 KTHDLQFCSRPALVAQQKLSYNGLDLAFSPYDEYWREIRKICAIHLFNSNRGQNFRPIEK 128
+T + C P+ + + + +D+ P D+Y+ + +FN N +EK
Sbjct: 142 ETKFMGVCQLPSENDENEYPHRRIDIRLQPKDQYYCGVLYFTGSDIFNKN--MRAHALEK 199
Query: 129 MNLIHQQASRPLFVELVLA--------RGYFPFIGW 156
I++ RPL V V + F +I W
Sbjct: 200 GFTINEYTIRPLGVTGVAGEPLPVDSEQDIFDYIQW 235
>pdb|3UXO|A Chain A, Crystal Structure Of Rat Dna Polymerase Beta Mutator I260q
Apoenzyme
pdb|3UXO|B Chain B, Crystal Structure Of Rat Dna Polymerase Beta Mutator I260q
Apoenzyme
pdb|3UXP|A Chain A, Co-Crystal Structure Of Rat Dna Polymerase Beta Mutator
I260q: Enzyme- Dna-Ddttp
pdb|3UXP|B Chain B, Co-Crystal Structure Of Rat Dna Polymerase Beta Mutator
I260q: Enzyme- Dna-Ddttp
Length = 335
Score = 27.3 bits (59), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 21/96 (21%), Positives = 38/96 (39%), Gaps = 10/96 (10%)
Query: 69 KTHDLQFCSRPALVAQQKLSYNGLDLAFSPYDEYWREIRKICAIHLFNSNRGQNFRPIEK 128
+T + C P+ + + + +D+ P D+Y+ + +FN N +EK
Sbjct: 232 ETKFMGVCQLPSENDENEYPHRRIDIRLQPKDQYYCGVLYFTGSDIFNKN--MRAHALEK 289
Query: 129 MNLIHQQASRPLFVELVLA--------RGYFPFIGW 156
I++ RPL V V + F +I W
Sbjct: 290 GFTINEYTIRPLGVTGVAGEPLPVDSEQDIFDYIQW 325
>pdb|1BPB|A Chain A, Crystal Structure Of Rat Dna Polymerase Beta: Evidence For
A Common Polymerase Mechanism
pdb|1NOM|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7), 31-Kd Domain;
Soaked In The Presence Of Mncl2 (5 Millimolar)
pdb|1ZQU|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7), 31-Kd Domain;
Soaked In The Presence Of Artificial Mother Liquor
pdb|1ZQV|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7), 31-Kd Domain;
Soaked In The Presence Of Cacl2 (150 Millimolar)
pdb|1ZQW|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7), 31-Kd Domain;
Soaked In The Presence Of Cscl (150 Millimolar)
pdb|1ZQX|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7), 31-Kd Domain;
Soaked In The Presence Of Kcl (150 Millimolar)
pdb|1ZQY|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7), 31-Kd Domain;
Soaked In The Presence Of Mgcl2 (50 Millimolar)
pdb|1ZQZ|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7), 31-Kd Domain;
Soaked In The Presence Of Mncl2 (50 Millimolar)
pdb|2BPC|A Chain A, Crystal Structure Of Rat Dna Polymerase Beta: Evidence For
A Common Polymerase Mechanism
Length = 248
Score = 26.6 bits (57), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 21/96 (21%), Positives = 38/96 (39%), Gaps = 10/96 (10%)
Query: 69 KTHDLQFCSRPALVAQQKLSYNGLDLAFSPYDEYWREIRKICAIHLFNSNRGQNFRPIEK 128
+T + C P+ + + + +D+ P D+Y+ + +FN N +EK
Sbjct: 145 ETKFMGVCQLPSENDENEYPHRRIDIRLIPKDQYYCGVLYFTGSDIFNKN--MRAHALEK 202
Query: 129 MNLIHQQASRPLFVELVLA--------RGYFPFIGW 156
I++ RPL V V + F +I W
Sbjct: 203 GFTINEYTIRPLGVTGVAGEPLPVDSEQDIFDYIQW 238
>pdb|3K75|D Chain D, X-Ray Crystal Structure Of Reduced Xrcc1 Bound To Dna Pol
Beta Catalytic Domain
pdb|3K75|E Chain E, X-Ray Crystal Structure Of Reduced Xrcc1 Bound To Dna Pol
Beta Catalytic Domain
Length = 252
Score = 26.6 bits (57), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 21/96 (21%), Positives = 38/96 (39%), Gaps = 10/96 (10%)
Query: 69 KTHDLQFCSRPALVAQQKLSYNGLDLAFSPYDEYWREIRKICAIHLFNSNRGQNFRPIEK 128
+T + C P+ + + + +D+ P D+Y+ + +FN N +EK
Sbjct: 143 ETKFMGVCQLPSENDENEYPHRRIDIRLIPKDQYYCGVLYFTGSDIFNKN--MRAHALEK 200
Query: 129 MNLIHQQASRPLFVELVLA--------RGYFPFIGW 156
I++ RPL V V + F +I W
Sbjct: 201 GFTINEYTIRPLGVTGVAGEPLPVDSEQDIFDYIQW 236
>pdb|1RPL|A Chain A, 2.3 Angstroms Crystal Structure Of The Catalytic Domain Of
Dna Polymerase Beta
Length = 251
Score = 26.6 bits (57), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 21/96 (21%), Positives = 38/96 (39%), Gaps = 10/96 (10%)
Query: 69 KTHDLQFCSRPALVAQQKLSYNGLDLAFSPYDEYWREIRKICAIHLFNSNRGQNFRPIEK 128
+T + C P+ + + + +D+ P D+Y+ + +FN N +EK
Sbjct: 148 ETKFMGVCQLPSENDENEYPHRRIDIRLIPKDQYYCGVLYFTGSDIFNKN--MRAHALEK 205
Query: 129 MNLIHQQASRPLFVELVLA--------RGYFPFIGW 156
I++ RPL V V + F +I W
Sbjct: 206 GFTINEYTIRPLGVTGVAGEPLPVDSEQDIFDYIQW 241
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.140 0.429
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,280,389
Number of Sequences: 62578
Number of extensions: 245882
Number of successful extensions: 676
Number of sequences better than 100.0: 57
Number of HSP's better than 100.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 630
Number of HSP's gapped (non-prelim): 64
length of query: 208
length of database: 14,973,337
effective HSP length: 94
effective length of query: 114
effective length of database: 9,091,005
effective search space: 1036374570
effective search space used: 1036374570
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.5 bits)