Query 040924
Match_columns 208
No_of_seqs 117 out of 1513
Neff 10.8
Searched_HMMs 46136
Date Fri Mar 29 13:10:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040924.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040924hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0156 Cytochrome P450 CYP2 s 100.0 1.1E-29 2.3E-34 202.6 17.3 201 4-208 21-273 (489)
2 PLN02687 flavonoid 3'-monooxyg 99.9 1.7E-24 3.6E-29 176.4 16.6 198 6-207 31-279 (517)
3 PLN00110 flavonoid 3',5'-hydro 99.9 2.6E-23 5.5E-28 168.8 16.5 199 3-207 25-275 (504)
4 PLN02655 ent-kaurene oxidase 99.9 8.8E-23 1.9E-27 164.4 17.1 119 11-129 1-119 (466)
5 PLN03234 cytochrome P450 83B1; 99.9 5.5E-23 1.2E-27 167.0 16.0 201 4-207 23-273 (499)
6 PLN02183 ferulate 5-hydroxylas 99.9 7.8E-23 1.7E-27 166.6 15.6 199 4-207 31-280 (516)
7 PLN02971 tryptophan N-hydroxyl 99.9 2.4E-22 5.1E-27 164.6 16.4 124 5-129 53-179 (543)
8 PTZ00404 cytochrome P450; Prov 99.9 2.9E-22 6.4E-27 162.1 14.8 122 4-129 24-145 (482)
9 PLN03112 cytochrome P450 famil 99.9 5.5E-22 1.2E-26 161.7 16.2 124 4-129 27-151 (514)
10 PLN02290 cytokinin trans-hydro 99.9 1.8E-22 3.9E-27 164.6 10.3 194 7-207 40-300 (516)
11 PLN00168 Cytochrome P450; Prov 99.9 3.1E-21 6.7E-26 157.4 16.5 124 4-129 30-157 (519)
12 PLN02966 cytochrome P450 83A1 99.9 3.3E-21 7.2E-26 156.6 15.7 126 4-129 24-149 (502)
13 PLN02196 abscisic acid 8'-hydr 99.9 4.9E-21 1.1E-25 154.2 14.6 189 5-207 31-255 (463)
14 PF00067 p450: Cytochrome P450 99.9 8.9E-22 1.9E-26 157.5 9.8 190 11-207 1-247 (463)
15 PLN02500 cytochrome P450 90B1 99.9 1.9E-20 4.1E-25 151.8 14.2 195 5-207 34-271 (490)
16 PLN02394 trans-cinnamate 4-mon 99.8 6.2E-20 1.3E-24 149.4 16.2 124 5-129 26-150 (503)
17 PLN02774 brassinosteroid-6-oxi 99.8 3.7E-20 8.1E-25 149.1 14.0 191 4-207 26-252 (463)
18 PLN03141 3-epi-6-deoxocathaste 99.8 5.8E-20 1.2E-24 147.6 14.7 194 4-207 2-241 (452)
19 PLN03018 homomethionine N-hydr 99.8 1.5E-19 3.3E-24 147.5 16.1 121 6-127 37-160 (534)
20 KOG0157 Cytochrome P450 CYP4/C 99.8 3.4E-20 7.3E-25 150.1 11.1 193 7-204 33-278 (497)
21 PLN02987 Cytochrome P450, fami 99.8 2.1E-19 4.5E-24 144.8 13.4 194 7-207 28-258 (472)
22 KOG0159 Cytochrome P450 CYP11/ 99.8 1.1E-18 2.4E-23 136.7 13.1 181 6-190 47-290 (519)
23 PLN02302 ent-kaurenoic acid ox 99.8 2.8E-18 6E-23 139.3 15.1 197 4-207 37-274 (490)
24 PLN02169 fatty acid (omega-1)- 99.8 1.3E-18 2.8E-23 141.3 13.0 192 10-207 32-285 (500)
25 KOG0158 Cytochrome P450 CYP3/C 99.8 1.4E-18 3.1E-23 137.9 9.5 121 6-129 28-151 (499)
26 PLN02738 carotene beta-ring hy 99.8 9.6E-18 2.1E-22 139.0 12.5 119 7-129 113-247 (633)
27 PLN02936 epsilon-ring hydroxyl 99.7 1.6E-17 3.5E-22 134.7 11.6 117 9-129 12-133 (489)
28 PLN03195 fatty acid omega-hydr 99.7 7.5E-17 1.6E-21 131.7 13.0 113 9-127 30-146 (516)
29 PLN02648 allene oxide synthase 99.6 2.6E-15 5.7E-20 120.9 5.7 124 6-135 14-159 (480)
30 PLN02426 cytochrome P450, fami 99.5 1.2E-12 2.5E-17 106.7 13.5 179 17-207 49-286 (502)
31 KOG0684 Cytochrome P450 [Secon 99.4 6.5E-12 1.4E-16 97.2 11.8 185 9-207 31-261 (486)
32 COG2124 CypX Cytochrome P450 [ 98.9 1.1E-08 2.4E-13 81.6 11.1 166 31-207 24-223 (411)
33 KOG0114 Predicted RNA-binding 84.4 7.3 0.00016 24.8 6.0 61 9-72 12-78 (124)
34 PF13893 RRM_5: RNA recognitio 63.1 22 0.00048 19.1 4.6 36 35-70 1-40 (56)
35 PF13625 Helicase_C_3: Helicas 53.9 31 0.00067 22.8 4.1 40 29-70 74-113 (129)
36 PLN03120 nucleic acid binding 49.1 97 0.0021 23.5 6.4 51 29-79 15-71 (260)
37 COG1707 ACT domain-containing 48.3 25 0.00053 24.5 2.9 40 28-67 153-197 (218)
38 PLN03134 glycine-rich RNA-bind 45.9 83 0.0018 21.3 5.3 41 30-70 46-95 (144)
39 KOG0107 Alternative splicing f 42.4 54 0.0012 23.2 3.9 39 31-69 23-65 (195)
40 TIGR01661 ELAV_HUD_SF ELAV/HuD 38.1 1.1E+02 0.0024 23.9 5.7 41 30-70 281-330 (352)
41 PHA01327 hypothetical protein 37.8 17 0.00037 18.6 0.7 19 92-111 12-30 (49)
42 cd01646 RT_Bac_retron_I RT_Bac 33.1 84 0.0018 21.4 3.8 55 8-69 52-107 (158)
43 KOG0109 RNA-binding protein LA 32.5 86 0.0019 24.2 3.9 48 19-69 6-54 (346)
44 COG5329 Phosphoinositide polyp 31.4 45 0.00097 28.2 2.5 39 30-68 294-332 (570)
45 smart00360 RRM RNA recognition 29.9 97 0.0021 16.6 4.7 40 31-70 9-57 (71)
46 smart00362 RRM_2 RNA recogniti 29.4 1E+02 0.0022 16.6 5.4 40 31-70 12-58 (72)
47 PF07659 DUF1599: Domain of Un 29.1 23 0.00049 20.2 0.4 11 97-107 3-13 (61)
48 PF12385 Peptidase_C70: Papain 28.1 1E+02 0.0022 21.5 3.3 17 32-48 98-114 (166)
49 PF09926 DUF2158: Uncharacteri 22.9 1.1E+02 0.0023 16.9 2.3 17 42-58 3-19 (53)
50 PF05172 Nup35_RRM: Nup53/35/4 22.4 2.2E+02 0.0047 18.0 4.5 46 30-75 17-78 (100)
51 PF00076 RRM_1: RNA recognitio 22.3 1.5E+02 0.0032 16.2 5.1 41 30-70 10-58 (70)
No 1
>KOG0156 consensus Cytochrome P450 CYP2 subfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.97 E-value=1.1e-29 Score=202.61 Aligned_cols=201 Identities=38% Similarity=0.717 Sum_probs=157.8
Q ss_pred CCCCCCCCCCCCCCccccccccCCCCCchHHHHHHHHhhCCeEEEEcCCcCEEEecCHHHHHHHHHHcCccCCCCCC-hH
Q 040924 4 SRNNTKLPPGPWGLPFIGTLHQLDVSKPHVLFWELSKKYGPLMSLRLGFSPSLVVSSAKMAKEILKTHDLQFCSRPA-LV 82 (208)
Q Consensus 4 ~~~~~~~~pgp~~~p~~g~~~~~~~~~~~~~~~~~~~~yG~v~~~~~~~~~~v~i~dp~~~~~i~~~~~~~~~~~~~-~~ 82 (208)
.+++.++||||+++|++||++++....+|..+.++.++|||++.+++|..++|+|+|+++++|+|++++..|.+|+. ..
T Consensus 21 ~~~~~~lPPGP~~lPiIGnl~~l~~~~~h~~~~~ls~~yGpi~tl~lG~~~~Vviss~~~akE~l~~~d~~fa~Rp~~~~ 100 (489)
T KOG0156|consen 21 YRKRRNLPPGPPPLPIIGNLHQLGSLPPHRSFRKLSKKYGPVFTLRLGSVPVVVISSYEAAKEVLVKQDLEFADRPDPTA 100 (489)
T ss_pred ccCCCCCCcCCCCCCccccHHHcCCCchhHHHHHHHHHhCCeEEEEecCceEEEECCHHHHHHHHHhCCccccCCCCchh
Confidence 34458899999999999999999444599999999999999999999999999999999999999999999999997 33
Q ss_pred HHHHhhcCCcceeeCCCChHHHHHHHHHHHHhhccccccccccHHHH------HHHHH-hc-C-----------------
Q 040924 83 AQQKLSYNGLDLAFSPYDEYWREIRKICAIHLFNSNRGQNFRPIEKM------NLIHQ-QA-S----------------- 137 (208)
Q Consensus 83 ~~~~~~~~~~~l~~~~~g~~w~~~Rk~l~~~~f~~~~l~~~~~~~~~------~~l~~-~~-~----------------- 137 (208)
....+..++.|++++++|+.||.+||++....|+.+.+++......+ +.+.+ .. .
T Consensus 101 ~~~~~~~~~~~i~~a~yG~~Wr~~Rr~~~~~L~~~~~~~~~~~~R~~E~~~l~~~l~~~~~~~~vdl~~~l~~~~~nvI~ 180 (489)
T KOG0156|consen 101 TLKYLSYGGKGIVFAPYGDYWREMRRFALTELRSFGRGKSFMEIREEEVDELVKKLSKSKKGEPVDLSELLDLLVGNVIC 180 (489)
T ss_pred hHHHhcCCCCceEeCCCcHHHHHHHHHHHHHhcChhhhhhhHHHHHHHHHHHHHHHHhcCCCceeeHHHHHHHHHHHHHH
Confidence 44666667899999988999999999999889999998877555533 33332 00 1
Q ss_pred ------------hhH---HHHHh----------hhccccc-cccccccccchhhhhhhhHHHHHHHHHHHHHHhhccccc
Q 040924 138 ------------RPL---FVELV----------LARGYFP-FIGWIDKLTGMLQRPQNNFQEIDRVYQELIDKHLDPNRA 191 (208)
Q Consensus 138 ------------~~~---~~~~~----------~~~~~~p-~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 191 (208)
+++ +.+++ ...+++| ++++++...+..++......+++++++++|+++++.. .
T Consensus 181 ~~~fG~rf~~~~~~~~~~~~~l~~~~~~~~~~~~~~d~~p~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~i~eh~~~~-~ 259 (489)
T KOG0156|consen 181 RMLFGRRFEEEDEEEFLELKELVEESLELLGSFNLSDYFPFLLRWLDGISGLEKRLKKVSKRLDEFLERIIDEHREKI-G 259 (489)
T ss_pred HHHhCCccccCCchHHHHHHHHHHHHHHHhCCccHHHHhhHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHhhh-c
Confidence 122 33333 5667788 5666654345677777777789999999999998875 2
Q ss_pred chhccccccHHHhhhcC
Q 040924 192 KIEQLQQEDVIDVLLQI 208 (208)
Q Consensus 192 ~~~~~~~~d~l~~ll~~ 208 (208)
. ++. +||+|.||++
T Consensus 260 ~-~~~--~D~vD~lL~~ 273 (489)
T KOG0156|consen 260 D-EEG--RDFVDALLKL 273 (489)
T ss_pred c-CCC--CcHHHHHHHh
Confidence 1 222 7999999863
No 2
>PLN02687 flavonoid 3'-monooxygenase
Probab=99.93 E-value=1.7e-24 Score=176.41 Aligned_cols=198 Identities=35% Similarity=0.686 Sum_probs=139.9
Q ss_pred CCCCCCCCCCCCccccccccCCCCCchHHHHHHHHhhCCeEEEEcCCcCEEEecCHHHHHHHHHHcCccCCCCCChHHHH
Q 040924 6 NNTKLPPGPWGLPFIGTLHQLDVSKPHVLFWELSKKYGPLMSLRLGFSPSLVVSSAKMAKEILKTHDLQFCSRPALVAQQ 85 (208)
Q Consensus 6 ~~~~~~pgp~~~p~~g~~~~~~~~~~~~~~~~~~~~yG~v~~~~~~~~~~v~i~dp~~~~~i~~~~~~~~~~~~~~~~~~ 85 (208)
++.+.||||.++|++||++.+ ..+++..+.+|+++||+++++++|+.++|+++||+++++||.++...|.+++......
T Consensus 31 ~~~~~pPgp~~~P~iG~~~~~-~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvv~~p~~~~~il~~~~~~f~~r~~~~~~~ 109 (517)
T PLN02687 31 HKRPLPPGPRGWPVLGNLPQL-GPKPHHTMAALAKTYGPLFRLRFGFVDVVVAASASVAAQFLRTHDANFSNRPPNSGAE 109 (517)
T ss_pred CCCCCCccCCCCCccccHHhc-CCchhHHHHHHHHHhCCeeEEecCCceEEEeCCHHHHHHHHHhcchhhhcCCCccchh
Confidence 345679999999999999887 5668899999999999999999999999999999999999998877888876544333
Q ss_pred HhhcCCcceeeCCCChHHHHHHHHHHHHhhccccccccccHHHH------HHHHHhc-C---------------------
Q 040924 86 KLSYNGLDLAFSPYDEYWREIRKICAIHLFNSNRGQNFRPIEKM------NLIHQQA-S--------------------- 137 (208)
Q Consensus 86 ~~~~~~~~l~~~~~g~~w~~~Rk~l~~~~f~~~~l~~~~~~~~~------~~l~~~~-~--------------------- 137 (208)
.+...+.+++++.+|+.|+++|++++.++|+.++++.+.+++++ +.+.+.. +
T Consensus 110 ~~~~~~~~~l~~~~g~~Wk~~Rr~l~~~~fs~~~l~~~~~~i~~~~~~l~~~l~~~~~~~~vd~~~~~~~~t~dvi~~~~ 189 (517)
T PLN02687 110 HMAYNYQDLVFAPYGPRWRALRKICAVHLFSAKALDDFRHVREEEVALLVRELARQHGTAPVNLGQLVNVCTTNALGRAM 189 (517)
T ss_pred hhccCCceeEeCCCCHHHHHHHHHHHHHhCCHHHHHHhHHHHHHHHHHHHHHHHHhcCCCceeHHHHHHHHHHHHHHHHH
Confidence 33323345555545999999999998678999999999998887 3343211 1
Q ss_pred -------------hhHHHHHh----h------hccccccccccccccchhhhhhhhHHHHHHHHHHHHHHhhcccccchh
Q 040924 138 -------------RPLFVELV----L------ARGYFPFIGWIDKLTGMLQRPQNNFQEIDRVYQELIDKHLDPNRAKIE 194 (208)
Q Consensus 138 -------------~~~~~~~~----~------~~~~~p~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 194 (208)
..++.+.+ . ..+++|++.+++. ++..++..++.+.+.+++.++|+++++....+..
T Consensus 190 fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~l~~-~~~~~~~~~~~~~~~~~~~~~i~~r~~~~~~~~~ 268 (517)
T PLN02687 190 VGRRVFAGDGDEKAREFKEMVVELMQLAGVFNVGDFVPALRWLDL-QGVVGKMKRLHRRFDAMMNGIIEEHKAAGQTGSE 268 (517)
T ss_pred hCccccccCCcchHHHHHHHHHHHHHHhccCcHHHHhhhHHHhCc-ccHHHHHHHHHHHHHHHHHHHHHHHHHhccccCc
Confidence 01122221 0 1123444433321 2234556677788899999999988765432112
Q ss_pred ccccccHHHhhhc
Q 040924 195 QLQQEDVIDVLLQ 207 (208)
Q Consensus 195 ~~~~~d~l~~ll~ 207 (208)
.. .|+++.|++
T Consensus 269 ~~--~d~l~~ll~ 279 (517)
T PLN02687 269 EH--KDLLSTLLA 279 (517)
T ss_pred cc--ccHHHHHHH
Confidence 23 689998875
No 3
>PLN00110 flavonoid 3',5'-hydroxylase (F3'5'H); Provisional
Probab=99.91 E-value=2.6e-23 Score=168.84 Aligned_cols=199 Identities=25% Similarity=0.503 Sum_probs=137.5
Q ss_pred CCCCCCCCCCCCCCCccccccccCCCCCchHHHHHHHHhhCCeEEEEcCCcCEEEecCHHHHHHHHHHcCccCCCCCChH
Q 040924 3 TSRNNTKLPPGPWGLPFIGTLHQLDVSKPHVLFWELSKKYGPLMSLRLGFSPSLVVSSAKMAKEILKTHDLQFCSRPALV 82 (208)
Q Consensus 3 ~~~~~~~~~pgp~~~p~~g~~~~~~~~~~~~~~~~~~~~yG~v~~~~~~~~~~v~i~dp~~~~~i~~~~~~~~~~~~~~~ 82 (208)
...+..+.||||+++|++|+++.+ ...++..+.+++++||+++++++|+.+.|+++||+++++||.++...|.+++...
T Consensus 25 ~~~~~~~~pPgp~~~Pl~G~l~~~-~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvv~dpe~~~~vl~~~~~~f~~r~~~~ 103 (504)
T PLN00110 25 LPKPSRKLPPGPRGWPLLGALPLL-GNMPHVALAKMAKRYGPVMFLKMGTNSMVVASTPEAARAFLKTLDINFSNRPPNA 103 (504)
T ss_pred hhcccCCCcccCCCCCeeechhhc-CCchHHHHHHHHHHhCCeEEEEcCCccEEEECCHHHHHHHHHhcchhhcCCCCcc
Confidence 345667889999999999998777 4567899999999999999999999999999999999999998877888776533
Q ss_pred HHHHh-hcCCcceeeCCCChHHHHHHHHHHHHhhccccccccccHHHH------HHHHHhc--C----------------
Q 040924 83 AQQKL-SYNGLDLAFSPYDEYWREIRKICAIHLFNSNRGQNFRPIEKM------NLIHQQA--S---------------- 137 (208)
Q Consensus 83 ~~~~~-~~~~~~l~~~~~g~~w~~~Rk~l~~~~f~~~~l~~~~~~~~~------~~l~~~~--~---------------- 137 (208)
..... ...+.++++++ |+.|+++|++++.++|+.+.++.+.+.+.+ +.+.+.. +
T Consensus 104 ~~~~~~~~~~~~l~~~~-g~~w~~~Rr~~~~~~f~~~~l~~~~~~i~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~~v 182 (504)
T PLN00110 104 GATHLAYGAQDMVFADY-GPRWKLLRKLSNLHMLGGKALEDWSQVRTVELGHMLRAMLELSQRGEPVVVPEMLTFSMANM 182 (504)
T ss_pred chhhhccCCCceeeCCC-CHHHHHHHHHHHHHhCCHHHHHHhhHHHHHHHHHHHHHHHHhccCCCcEeHHHHHHHHHHHH
Confidence 22222 22234566565 999999999998458999999988887755 2222211 1
Q ss_pred -----------------hhHHHHHh----------hhccccccccccccccchhhhhhhhHHHHHHHHHHHHHHhhcccc
Q 040924 138 -----------------RPLFVELV----------LARGYFPFIGWIDKLTGMLQRPQNNFQEIDRVYQELIDKHLDPNR 190 (208)
Q Consensus 138 -----------------~~~~~~~~----------~~~~~~p~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 190 (208)
..++.+++ ...+++|++.+++. ++..+...++.+.+.+++.++|+++++...
T Consensus 183 i~~~~fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~l~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 261 (504)
T PLN00110 183 IGQVILSRRVFETKGSESNEFKDMVVELMTTAGYFNIGDFIPSIAWMDI-QGIERGMKHLHKKFDKLLTRMIEEHTASAH 261 (504)
T ss_pred HHHHHhCCcccccCchhHHHHHHHHHHHHHHhccccHHHHcchHhhhCc-chHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 01122222 11133444433321 223455666777888888888888776432
Q ss_pred cchhccccccHHHhhhc
Q 040924 191 AKIEQLQQEDVIDVLLQ 207 (208)
Q Consensus 191 ~~~~~~~~~d~l~~ll~ 207 (208)
. .... .|+++.+++
T Consensus 262 ~-~~~~--~d~l~~ll~ 275 (504)
T PLN00110 262 E-RKGN--PDFLDVVMA 275 (504)
T ss_pred c-cccC--CChhhHHhh
Confidence 2 1122 689988874
No 4
>PLN02655 ent-kaurene oxidase
Probab=99.91 E-value=8.8e-23 Score=164.44 Aligned_cols=119 Identities=31% Similarity=0.464 Sum_probs=96.5
Q ss_pred CCCCCCCccccccccCCCCCchHHHHHHHHhhCCeEEEEcCCcCEEEecCHHHHHHHHHHcCccCCCCCChHHHHHhhcC
Q 040924 11 PPGPWGLPFIGTLHQLDVSKPHVLFWELSKKYGPLMSLRLGFSPSLVVSSAKMAKEILKTHDLQFCSRPALVAQQKLSYN 90 (208)
Q Consensus 11 ~pgp~~~p~~g~~~~~~~~~~~~~~~~~~~~yG~v~~~~~~~~~~v~i~dp~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 90 (208)
||||+++|++||++++...+++..+.+|+++||++|++++++.++|+|+||+++++||.++...|.+++.......+...
T Consensus 1 ppgp~~lP~iG~l~~~~~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvv~~pe~~k~il~~~~~~f~~r~~~~~~~~~~~~ 80 (466)
T PLN02655 1 VPAVPGLPVIGNLLQLKEKKPHRTFTKWSEIYGPIYTIRTGASSVVVLNSTEVAKEAMVTKFSSISTRKLSKALTVLTRD 80 (466)
T ss_pred CcCCCCCCccccHHHcCCCchhHHHHHHHHHhCCeEEEEECCEeEEEeCCHHHHHHHHHhcCchhcCCChhhHHHHHhcC
Confidence 68999999999998885456889999999999999999999999999999999999999888888777643333333322
Q ss_pred CcceeeCCCChHHHHHHHHHHHHhhccccccccccHHHH
Q 040924 91 GLDLAFSPYDEYWREIRKICAIHLFNSNRGQNFRPIEKM 129 (208)
Q Consensus 91 ~~~l~~~~~g~~w~~~Rk~l~~~~f~~~~l~~~~~~~~~ 129 (208)
+.+++++++|+.|+++|+.+..++|+...++.+.+++++
T Consensus 81 ~~~~~~~~~g~~wr~~Rr~~~~~~~s~~~~~~~~~~~~~ 119 (466)
T PLN02655 81 KSMVATSDYGDFHKMVKRYVMNNLLGANAQKRFRDTRDM 119 (466)
T ss_pred CCceeeCCCcHHHHHHHHHHHHHhcCchHHHHhHHHHHH
Confidence 345667666999999999887577887777777776555
No 5
>PLN03234 cytochrome P450 83B1; Provisional
Probab=99.91 E-value=5.5e-23 Score=167.00 Aligned_cols=201 Identities=43% Similarity=0.833 Sum_probs=140.2
Q ss_pred CCCCCCCCCCCCCCccccccccCCCCCchHHHHHHHHhhCCeEEEEcCCcCEEEecCHHHHHHHHHHcCccCCCCCChHH
Q 040924 4 SRNNTKLPPGPWGLPFIGTLHQLDVSKPHVLFWELSKKYGPLMSLRLGFSPSLVVSSAKMAKEILKTHDLQFCSRPALVA 83 (208)
Q Consensus 4 ~~~~~~~~pgp~~~p~~g~~~~~~~~~~~~~~~~~~~~yG~v~~~~~~~~~~v~i~dp~~~~~i~~~~~~~~~~~~~~~~ 83 (208)
.+++.+.||||+++|++||+..+...+++..+.+++++||+++++++|+.++|+++||+++++|+.+++..|.+++....
T Consensus 23 ~~~~~~~pPgp~~~P~iG~~~~~~~~~~~~~~~~~~~~yG~~~~~~lg~~~~vvv~dpe~~~~il~~~~~~f~~r~~~~~ 102 (499)
T PLN03234 23 TKKSLRLPPGPKGLPIIGNLHQMEKFNPQHFLFRLSKLYGPIFTMKIGGRRLAVISSAELAKELLKTQDLNFTARPLLKG 102 (499)
T ss_pred cCCCCCCCcCCCCCCeeccHHhcCCCCccHHHHHHHHHcCCeEEEEecCcCEEEECCHHHHHHHHHhCCccccCCCCchh
Confidence 45567889999999999999887444678899999999999999999999999999999999999988778887765332
Q ss_pred HHHhhcCCcceeeCCCChHHHHHHHHHHHHhhccccccccccHHHH---HHHHHh---c--C------------------
Q 040924 84 QQKLSYNGLDLAFSPYDEYWREIRKICAIHLFNSNRGQNFRPIEKM---NLIHQQ---A--S------------------ 137 (208)
Q Consensus 84 ~~~~~~~~~~l~~~~~g~~w~~~Rk~l~~~~f~~~~l~~~~~~~~~---~~l~~~---~--~------------------ 137 (208)
.......+.++.+..+++.|+++|+.+..++|+.+++..+.+.+++ +.+..+ . +
T Consensus 103 ~~~~~~~~~~~~~~~~~~~w~~~Rr~l~~~~f~~~~l~~~~~~i~~~~~~ll~~l~~~~~~~~~vd~~~~~~~~t~dvi~ 182 (499)
T PLN03234 103 QQTMSYQGRELGFGQYTAYYREMRKMCMVNLFSPNRVASFRPVREEECQRMMDKIYKAADQSGTVDLSELLLSFTNCVVC 182 (499)
T ss_pred hhhhccCCCccccCCCcHHHHHHHHHHHHHhcCHHHHHHhHHHHHHHHHHHHHHHHHhccCCCeEEHHHHHHHHHHHHHH
Confidence 2222223444444455899999999864499999999999888877 222222 1 1
Q ss_pred -----------hhHHHHHh-------------hhccccccccccccccchhhhhhhhHHHHHHHHHHHHHHhhcccccch
Q 040924 138 -----------RPLFVELV-------------LARGYFPFIGWIDKLTGMLQRPQNNFQEIDRVYQELIDKHLDPNRAKI 193 (208)
Q Consensus 138 -----------~~~~~~~~-------------~~~~~~p~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 193 (208)
..++..++ .....+|++++++.+++..+++.++.+.+.+++.++|+++++....+
T Consensus 183 ~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~- 261 (499)
T PLN03234 183 RQAFGKRYNEYGTEMKRFIDILYETQALLGTLFFSDLFPYFGFLDNLTGLSARLKKAFKELDTYLQELLDETLDPNRPK- 261 (499)
T ss_pred HHHhCCcccccchhHHHHHHHHHHHHHHcCCCcHHHHhhHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccC-
Confidence 01111111 01123344443332234456788899999999999999876543221
Q ss_pred hccccccHHHhhhc
Q 040924 194 EQLQQEDVIDVLLQ 207 (208)
Q Consensus 194 ~~~~~~d~l~~ll~ 207 (208)
.+. .|+++.|++
T Consensus 262 ~~~--~d~l~~l~~ 273 (499)
T PLN03234 262 QET--ESFIDLLMQ 273 (499)
T ss_pred CCc--ccHHHHHHH
Confidence 223 688888764
No 6
>PLN02183 ferulate 5-hydroxylase
Probab=99.90 E-value=7.8e-23 Score=166.63 Aligned_cols=199 Identities=28% Similarity=0.592 Sum_probs=136.8
Q ss_pred CCCCCCCCCCCCCCccccccccCCCCCchHHHHHHHHhhCCeEEEEcCCcCEEEecCHHHHHHHHHHcCccCCCCCChHH
Q 040924 4 SRNNTKLPPGPWGLPFIGTLHQLDVSKPHVLFWELSKKYGPLMSLRLGFSPSLVVSSAKMAKEILKTHDLQFCSRPALVA 83 (208)
Q Consensus 4 ~~~~~~~~pgp~~~p~~g~~~~~~~~~~~~~~~~~~~~yG~v~~~~~~~~~~v~i~dp~~~~~i~~~~~~~~~~~~~~~~ 83 (208)
.+++.+.||||+++|++|++..+ ....+..+.+|+++||++|++++++.++|+++||+++++||.+++..|..++....
T Consensus 31 ~~~~~~~ppgp~~~Pl~G~l~~~-~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvv~dp~~i~~il~~~~~~f~~r~~~~~ 109 (516)
T PLN02183 31 LRRRLPYPPGPKGLPIIGNMLMM-DQLTHRGLANLAKQYGGLFHMRMGYLHMVAVSSPEVARQVLQVQDSVFSNRPANIA 109 (516)
T ss_pred ccCCCCCCcCCCCCCeeccHHhc-CCcchHHHHHHHHHhCCeeEEEeCCcceEEeCCHHHHHHHHHhhhhhhcCCCcccc
Confidence 45567889999999999999776 44567789999999999999999999999999999999999987777877764332
Q ss_pred HHHhhc-CCcceeeCCCChHHHHHHHHHHHHhhccccccccccHHHH--HHHHHh---cC--------------------
Q 040924 84 QQKLSY-NGLDLAFSPYDEYWREIRKICAIHLFNSNRGQNFRPIEKM--NLIHQQ---AS-------------------- 137 (208)
Q Consensus 84 ~~~~~~-~~~~l~~~~~g~~w~~~Rk~l~~~~f~~~~l~~~~~~~~~--~~l~~~---~~-------------------- 137 (208)
...... .+.++++++ |+.|+++|+++..++|+.+.++.+.+++++ ..++.+ .+
T Consensus 110 ~~~~~~~~~~~l~~~~-g~~w~~~Rr~~~~~~f~~~~l~~~~~~~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~vi~~~ 188 (516)
T PLN02183 110 ISYLTYDRADMAFAHY-GPFWRQMRKLCVMKLFSRKRAESWASVRDEVDSMVRSVSSNIGKPVNIGELIFTLTRNITYRA 188 (516)
T ss_pred hhccccCCCceEeCCC-ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhcCCCcEeHHHHHHHHHHHHHHhH
Confidence 222221 235566666 999999999954399999999888877655 222222 11
Q ss_pred ---------hhHHHHHh----------hhccccccccccccccchhhhhhhhHHHHHHHHHHHHHHhhcccccc------
Q 040924 138 ---------RPLFVELV----------LARGYFPFIGWIDKLTGMLQRPQNNFQEIDRVYQELIDKHLDPNRAK------ 192 (208)
Q Consensus 138 ---------~~~~~~~~----------~~~~~~p~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~------ 192 (208)
..++.+.+ .....+|++.++.. ....++..++.+.+.+++.++|+++++....+
T Consensus 189 ~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 267 (516)
T PLN02183 189 AFGSSSNEGQDEFIKILQEFSKLFGAFNVADFIPWLGWIDP-QGLNKRLVKARKSLDGFIDDIIDDHIQKRKNQNADNDS 267 (516)
T ss_pred hhcCcccchHHHHHHHHHHHHHHhCCccHHHhcchhHhccc-ccHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccc
Confidence 12233322 12234455444321 12355677778888888888888776532210
Q ss_pred hhccccccHHHhhhc
Q 040924 193 IEQLQQEDVIDVLLQ 207 (208)
Q Consensus 193 ~~~~~~~d~l~~ll~ 207 (208)
.... .|+++.+|+
T Consensus 268 ~~~~--~d~l~~ll~ 280 (516)
T PLN02183 268 EEAE--TDMVDDLLA 280 (516)
T ss_pred cccc--ccHHHHHHH
Confidence 0122 689998875
No 7
>PLN02971 tryptophan N-hydroxylase
Probab=99.90 E-value=2.4e-22 Score=164.58 Aligned_cols=124 Identities=26% Similarity=0.391 Sum_probs=94.7
Q ss_pred CCCCCCCCCCCCCccccccccCCCCC-chHHHHHHHHhhC-CeEEEEcCCcCEEEecCHHHHHHHHHHcCccCCCCCChH
Q 040924 5 RNNTKLPPGPWGLPFIGTLHQLDVSK-PHVLFWELSKKYG-PLMSLRLGFSPSLVVSSAKMAKEILKTHDLQFCSRPALV 82 (208)
Q Consensus 5 ~~~~~~~pgp~~~p~~g~~~~~~~~~-~~~~~~~~~~~yG-~v~~~~~~~~~~v~i~dp~~~~~i~~~~~~~~~~~~~~~ 82 (208)
+++.+.||||+++|++||++.+..+. .+..+.++.++|| +++++++|+.++|+|+||+++++||.+++..|.+++...
T Consensus 53 ~r~~~lPPGP~~lPiiGnl~~l~~~~~~~~~l~~~~~~yg~~i~~~~~G~~~~vvv~dpe~ikevl~~~~~~f~~rp~~~ 132 (543)
T PLN02971 53 KKLHPLPPGPTGFPIVGMIPAMLKNRPVFRWLHSLMKELNTEIACVRLGNTHVIPVTCPKIAREIFKQQDALFASRPLTY 132 (543)
T ss_pred CCCCCCCcCCCCCCcccchHHhccCCcHhHHHHHHHHHhCCceEEEEcCCcceEEECCHHHHHHHHHhcchhhcCCCccc
Confidence 34567899999999999998874333 3678899999999 899999999999999999999999998888898887533
Q ss_pred HHHHhhcCCc-ceeeCCCChHHHHHHHHHHHHhhccccccccccHHHH
Q 040924 83 AQQKLSYNGL-DLAFSPYDEYWREIRKICAIHLFNSNRGQNFRPIEKM 129 (208)
Q Consensus 83 ~~~~~~~~~~-~l~~~~~g~~w~~~Rk~l~~~~f~~~~l~~~~~~~~~ 129 (208)
....+..+.. +++.++ |+.|+++||+++.+.|+...++.+.+++++
T Consensus 133 ~~~~l~~~~~~~l~~~~-G~~Wk~~Rk~l~~~l~~~~~~~~~~~~~~~ 179 (543)
T PLN02971 133 AQKILSNGYKTCVITPF-GEQFKKMRKVIMTEIVCPARHRWLHDNRAE 179 (543)
T ss_pred chhhccCCCCceEecCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3222221112 355555 999999999998456665555566666655
No 8
>PTZ00404 cytochrome P450; Provisional
Probab=99.89 E-value=2.9e-22 Score=162.11 Aligned_cols=122 Identities=22% Similarity=0.362 Sum_probs=103.2
Q ss_pred CCCCCCCCCCCCCCccccccccCCCCCchHHHHHHHHhhCCeEEEEcCCcCEEEecCHHHHHHHHHHcCccCCCCCChHH
Q 040924 4 SRNNTKLPPGPWGLPFIGTLHQLDVSKPHVLFWELSKKYGPLMSLRLGFSPSLVVSSAKMAKEILKTHDLQFCSRPALVA 83 (208)
Q Consensus 4 ~~~~~~~~pgp~~~p~~g~~~~~~~~~~~~~~~~~~~~yG~v~~~~~~~~~~v~i~dp~~~~~i~~~~~~~~~~~~~~~~ 83 (208)
++...+.+|||+++|++||+..+ ..+++..+.+++++||+++++++++.+.|+++||+++++|+.++.+.|.+++....
T Consensus 24 ~~~~~~~~pgp~~~p~~G~~~~~-~~~~~~~~~~~~~~yG~i~~~~~g~~~~v~i~~p~~~~~il~~~~~~~~~r~~~~~ 102 (482)
T PTZ00404 24 KKIHKNELKGPIPIPILGNLHQL-GNLPHRDLTKMSKKYGGIFRIWFADLYTVVLSDPILIREMFVDNFDNFSDRPKIPS 102 (482)
T ss_pred hhccCCCCCCCCCCCeeccHhhh-cccHHHHHHHHHHHhCCeeEEEecCCCEEEECCHHHHHHHHHhcchhhcCCCCcce
Confidence 45567789999999999999887 55788999999999999999999999999999999999999877667766654332
Q ss_pred HHHhhcCCcceeeCCCChHHHHHHHHHHHHhhccccccccccHHHH
Q 040924 84 QQKLSYNGLDLAFSPYDEYWREIRKICAIHLFNSNRGQNFRPIEKM 129 (208)
Q Consensus 84 ~~~~~~~~~~l~~~~~g~~w~~~Rk~l~~~~f~~~~l~~~~~~~~~ 129 (208)
... ...+.|+++++ |+.|+++|++++ ++|+...++.+.+.+.+
T Consensus 103 ~~~-~~~~~~l~~~~-g~~w~~~Rk~~~-~~f~~~~l~~~~~~i~~ 145 (482)
T PTZ00404 103 IKH-GTFYHGIVTSS-GEYWKRNREIVG-KAMRKTNLKHIYDLLDD 145 (482)
T ss_pred eee-eccCCceeccC-hHHHHHHHHHHH-HHHhhhccccHHHHHHH
Confidence 221 12367899887 999999999999 99999999999888887
No 9
>PLN03112 cytochrome P450 family protein; Provisional
Probab=99.89 E-value=5.5e-22 Score=161.67 Aligned_cols=124 Identities=34% Similarity=0.531 Sum_probs=100.0
Q ss_pred CCCCCCCCCCCCCCccccccccCCCCCchHHHHHHHHhhCCeEEEEcCCcCEEEecCHHHHHHHHHHcCccCCCCCChHH
Q 040924 4 SRNNTKLPPGPWGLPFIGTLHQLDVSKPHVLFWELSKKYGPLMSLRLGFSPSLVVSSAKMAKEILKTHDLQFCSRPALVA 83 (208)
Q Consensus 4 ~~~~~~~~pgp~~~p~~g~~~~~~~~~~~~~~~~~~~~yG~v~~~~~~~~~~v~i~dp~~~~~i~~~~~~~~~~~~~~~~ 83 (208)
++++.+.||||+++|++||+..+ ..+++..+.+++++||+++++++++.+.|+++||+++++|+.++.+.|.+++....
T Consensus 27 ~~~~~~~ppgp~~~pl~G~~~~~-~~~~~~~~~~~~~kyG~v~~~~~g~~~~v~v~dpe~~~~vl~~~~~~f~~~~~~~~ 105 (514)
T PLN03112 27 MRKSLRLPPGPPRWPIVGNLLQL-GPLPHRDLASLCKKYGPLVYLRLGSVDAITTDDPELIREILLRQDDVFASRPRTLA 105 (514)
T ss_pred ccCCCCCccCCCCCCeeeeHHhc-CCchHHHHHHHHHHhCCeEEEEecCccEEEECCHHHHHHHHHhCCcccccCCCccc
Confidence 45567789999999999999887 45678899999999999999999999999999999999999888888887765322
Q ss_pred HHH-hhcCCcceeeCCCChHHHHHHHHHHHHhhccccccccccHHHH
Q 040924 84 QQK-LSYNGLDLAFSPYDEYWREIRKICAIHLFNSNRGQNFRPIEKM 129 (208)
Q Consensus 84 ~~~-~~~~~~~l~~~~~g~~w~~~Rk~l~~~~f~~~~l~~~~~~~~~ 129 (208)
... ....+.+++.++ |+.|+++|+++..++|+.+.++.+.+.+.+
T Consensus 106 ~~~~~~g~~~~~~~~~-g~~wk~~Rr~~~~~~f~~~~l~~~~~~~~~ 151 (514)
T PLN03112 106 AVHLAYGCGDVALAPL-GPHWKRMRRICMEHLLTTKRLESFAKHRAE 151 (514)
T ss_pred ceeeccCCCceEeCCC-CHHHHHHHHHHHHHhcCHHHHHHhhHHHHH
Confidence 111 111233455555 999999999976479999999999888866
No 10
>PLN02290 cytokinin trans-hydroxylase
Probab=99.88 E-value=1.8e-22 Score=164.57 Aligned_cols=194 Identities=18% Similarity=0.254 Sum_probs=129.1
Q ss_pred CCCCCCCCCCCccccccccCCC------------------CCchHHHHHHHHhhCCeEEEEcCCcCEEEecCHHHHHHHH
Q 040924 7 NTKLPPGPWGLPFIGTLHQLDV------------------SKPHVLFWELSKKYGPLMSLRLGFSPSLVVSSAKMAKEIL 68 (208)
Q Consensus 7 ~~~~~pgp~~~p~~g~~~~~~~------------------~~~~~~~~~~~~~yG~v~~~~~~~~~~v~i~dp~~~~~i~ 68 (208)
..+.||||+++|++||++.+.. ++....+.+|+++||+++++++|+.++|+++||+++++||
T Consensus 40 ~~~~~PGP~~~P~iGnl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvv~dp~~v~~il 119 (516)
T PLN02290 40 ERQGVRGPKPRPLTGNILDVSALVSQSTSKDMDSIHHDIVGRLLPHYVAWSKQYGKRFIYWNGTEPRLCLTETELIKELL 119 (516)
T ss_pred HHcCCCCCCCCcCCCCHHHHHHHHHHhhcCCCCCCCcccccccchHHHHHHHHhCCeEEEccCCccEEEECCHHHHHHHH
Confidence 4556999999999999877621 2233457889999999999999999999999999999999
Q ss_pred HHcCccCCCCCChHHHHHhhcCCcceeeCCCChHHHHHHHHHHHHhhccccccccccHHHH------HHHHHhc--C---
Q 040924 69 KTHDLQFCSRPALVAQQKLSYNGLDLAFSPYDEYWREIRKICAIHLFNSNRGQNFRPIEKM------NLIHQQA--S--- 137 (208)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~w~~~Rk~l~~~~f~~~~l~~~~~~~~~------~~l~~~~--~--- 137 (208)
.++. .+..++...........|.|+++++ |+.|+++||+++ ++|+.+.++.+.+.+.+ +.+.+.. +
T Consensus 120 ~~~~-~~~~r~~~~~~~~~~~~g~~l~~~~-g~~Wk~~Rk~~~-~~f~~~~l~~~~~~i~~~~~~l~~~l~~~~~~~~~~ 196 (516)
T PLN02290 120 TKYN-TVTGKSWLQQQGTKHFIGRGLLMAN-GADWYHQRHIAA-PAFMGDRLKGYAGHMVECTKQMLQSLQKAVESGQTE 196 (516)
T ss_pred hcCC-CCCCCcchhhhHHHHHhcCCccccC-chHHHHHHhhcc-cccCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCce
Confidence 8763 4444543211111112357899887 999999999999 99999999999888877 3343211 1
Q ss_pred --------------------------hhHHHHHh----------hhccccccccccccccchhhhhhhhHHHHHHHHHHH
Q 040924 138 --------------------------RPLFVELV----------LARGYFPFIGWIDKLTGMLQRPQNNFQEIDRVYQEL 181 (208)
Q Consensus 138 --------------------------~~~~~~~~----------~~~~~~p~l~~l~~~~~~~~~~~~~~~~~~~~~~~~ 181 (208)
.+++.+.+ .....+|++.+++ .+..+.+..+...+.+++.++
T Consensus 197 vd~~~~~~~~~~~vi~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~p--~~~~~~~~~~~~~~~~~~~~~ 274 (516)
T PLN02290 197 VEIGEYMTRLTADIISRTEFDSSYEKGKQIFHLLTVLQRLCAQATRHLCFPGSRFFP--SKYNREIKSLKGEVERLLMEI 274 (516)
T ss_pred EEhHHHHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHHhhhhhcCchhhhCC--ChhHHHHHHHHHHHHHHHHHH
Confidence 01111111 0001123332232 123445666777899999999
Q ss_pred HHHhhcccccch--hccccccHHHhhhc
Q 040924 182 IDKHLDPNRAKI--EQLQQEDVIDVLLQ 207 (208)
Q Consensus 182 i~~~~~~~~~~~--~~~~~~d~l~~ll~ 207 (208)
|+++++..+.+. ... .|+|+.+++
T Consensus 275 i~~~~~~~~~~~~~~~~--~d~l~~ll~ 300 (516)
T PLN02290 275 IQSRRDCVEIGRSSSYG--DDLLGMLLN 300 (516)
T ss_pred HHHHHHHhhcccCCCCC--CCHHHHHHH
Confidence 988876543211 123 689988874
No 11
>PLN00168 Cytochrome P450; Provisional
Probab=99.88 E-value=3.1e-21 Score=157.39 Aligned_cols=124 Identities=28% Similarity=0.526 Sum_probs=98.8
Q ss_pred CCCCCCCCCCCCCCccccccccCC--CCCchHHHHHHHHhhCCeEEEEcCCcCEEEecCHHHHHHHHHHcCccCCCCCCh
Q 040924 4 SRNNTKLPPGPWGLPFIGTLHQLD--VSKPHVLFWELSKKYGPLMSLRLGFSPSLVVSSAKMAKEILKTHDLQFCSRPAL 81 (208)
Q Consensus 4 ~~~~~~~~pgp~~~p~~g~~~~~~--~~~~~~~~~~~~~~yG~v~~~~~~~~~~v~i~dp~~~~~i~~~~~~~~~~~~~~ 81 (208)
.++..+.||||+++|++||++.+. ..+++..+.+++++||++|++++|+.+.|+++||+++++||.+++..|..++..
T Consensus 30 ~~~~~~lpPgp~~~pl~G~l~~~~~~~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvv~dpe~~~~il~~~~~~f~~rp~~ 109 (519)
T PLN00168 30 GKKGRRLPPGPPAVPLLGSLVWLTNSSADVEPLLRRLIARYGPVVSLRVGSRLSVFVADRRLAHAALVERGAALADRPAV 109 (519)
T ss_pred CCCCCCCCcCCCCCcccccHHhhccccccHHHHHHHHHHHhCCeEEEEcCCccEEEECCHHHHHHHHHhcCCccccCCcc
Confidence 345667899999999999987653 235778899999999999999999999999999999999999888888877753
Q ss_pred HHHHHhhcCCcceee-CCCChHHHHHHHH-HHHHhhccccccccccHHHH
Q 040924 82 VAQQKLSYNGLDLAF-SPYDEYWREIRKI-CAIHLFNSNRGQNFRPIEKM 129 (208)
Q Consensus 82 ~~~~~~~~~~~~l~~-~~~g~~w~~~Rk~-l~~~~f~~~~l~~~~~~~~~ 129 (208)
.....+. .+.+++. +.+|+.|+++||. ++ ++|+.+.++.+.+.+.+
T Consensus 110 ~~~~~~~-~~~~~~~~~~~G~~Wk~~Rr~~~~-~~fs~~~l~~~~~~~~~ 157 (519)
T PLN00168 110 ASSRLLG-ESDNTITRSSYGPVWRLLRRNLVA-ETLHPSRVRLFAPARAW 157 (519)
T ss_pred cchhhhc-cCCCceeCCCCCHHHHHHHHHHHH-hccCHHHHHHHHHHHHH
Confidence 3222222 2234444 2349999999874 55 99999999999998877
No 12
>PLN02966 cytochrome P450 83A1
Probab=99.87 E-value=3.3e-21 Score=156.64 Aligned_cols=126 Identities=42% Similarity=0.725 Sum_probs=99.1
Q ss_pred CCCCCCCCCCCCCCccccccccCCCCCchHHHHHHHHhhCCeEEEEcCCcCEEEecCHHHHHHHHHHcCccCCCCCChHH
Q 040924 4 SRNNTKLPPGPWGLPFIGTLHQLDVSKPHVLFWELSKKYGPLMSLRLGFSPSLVVSSAKMAKEILKTHDLQFCSRPALVA 83 (208)
Q Consensus 4 ~~~~~~~~pgp~~~p~~g~~~~~~~~~~~~~~~~~~~~yG~v~~~~~~~~~~v~i~dp~~~~~i~~~~~~~~~~~~~~~~ 83 (208)
.++..+.||||+++|++||+..+...+++..+.+|+++||+++++++++.+.|+++||+.+++|+.+++..|.+++....
T Consensus 24 ~~~~~~~ppgp~~~p~~G~l~~l~~~~~~~~~~~~~~~yG~v~~~~~g~~~~vvi~~p~~i~~vl~~~~~~~~~~~~~~~ 103 (502)
T PLN02966 24 KTKRYKLPPGPSPLPVIGNLLQLQKLNPQRFFAGWAKKYGPILSYRIGSRTMVVISSAELAKELLKTQDVNFADRPPHRG 103 (502)
T ss_pred ccCCCCCCcCCCCCCeeccHHhcCCCChhHHHHHHHHHhCCeEEEecCCCcEEEECCHHHHHHHHHhCcccccCCCCCcc
Confidence 45566789999999999999887555788999999999999999999999999999999999999887777776653222
Q ss_pred HHHhhcCCcceeeCCCChHHHHHHHHHHHHhhccccccccccHHHH
Q 040924 84 QQKLSYNGLDLAFSPYDEYWREIRKICAIHLFNSNRGQNFRPIEKM 129 (208)
Q Consensus 84 ~~~~~~~~~~l~~~~~g~~w~~~Rk~l~~~~f~~~~l~~~~~~~~~ 129 (208)
......+..++.+..+|+.|+.+|+++..++|+.+.+..+.+.+++
T Consensus 104 ~~~~~~~~~~~~~~~~g~~w~~~R~~~~~~~f~~~~l~~~~~~i~~ 149 (502)
T PLN02966 104 HEFISYGRRDMALNHYTPYYREIRKMGMNHLFSPTRVATFKHVREE 149 (502)
T ss_pred ceeeccCcceeeeCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 1111122233434434999999999944399999999999888887
No 13
>PLN02196 abscisic acid 8'-hydroxylase
Probab=99.87 E-value=4.9e-21 Score=154.19 Aligned_cols=189 Identities=19% Similarity=0.346 Sum_probs=132.6
Q ss_pred CCCCCCCCCCCCCccccccccCCCCCchHHHHHHHHhhCCeEEEEcCCcCEEEecCHHHHHHHHHHcCccCCCCCChHHH
Q 040924 5 RNNTKLPPGPWGLPFIGTLHQLDVSKPHVLFWELSKKYGPLMSLRLGFSPSLVVSSAKMAKEILKTHDLQFCSRPALVAQ 84 (208)
Q Consensus 5 ~~~~~~~pgp~~~p~~g~~~~~~~~~~~~~~~~~~~~yG~v~~~~~~~~~~v~i~dp~~~~~i~~~~~~~~~~~~~~~~~ 84 (208)
+++...||||+++|++||+..+...+++..+.+++++||+++++++++.++|+++||+++++|+.++.+.|. +.....
T Consensus 31 ~~~~~~Ppgp~~~P~iG~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~~~~v~v~~p~~~~~vl~~~~~~~~--~~~~~~ 108 (463)
T PLN02196 31 STKLPLPPGTMGWPYVGETFQLYSQDPNVFFASKQKRYGSVFKTHVLGCPCVMISSPEAAKFVLVTKSHLFK--PTFPAS 108 (463)
T ss_pred CCCCCCCCCCCCCCccchHHHHHhcCHHHHHHHHHHHhhhhheeeecCCceEEEcCHHHHHHHHhCCCCccc--ccCchH
Confidence 345567888888999999887656788999999999999999999999999999999999999987766663 222222
Q ss_pred HHhhcCCcceeeCCCChHHHHHHHHHHHHhhccccccccccHHHH---HHHHHhcC-----hhHH---------------
Q 040924 85 QKLSYNGLDLAFSPYDEYWREIRKICAIHLFNSNRGQNFRPIEKM---NLIHQQAS-----RPLF--------------- 141 (208)
Q Consensus 85 ~~~~~~~~~l~~~~~g~~w~~~Rk~l~~~~f~~~~l~~~~~~~~~---~~l~~~~~-----~~~~--------------- 141 (208)
.....++.|+++++ |+.|+++||+++ +.|+.+.++.+.+.+++ +.+..+.+ .+.+
T Consensus 109 ~~~~~g~~~l~~~~-g~~w~~~Rk~l~-~~f~~~~l~~~~~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~fG~ 186 (463)
T PLN02196 109 KERMLGKQAIFFHQ-GDYHAKLRKLVL-RAFMPDAIRNMVPDIESIAQESLNSWEGTQINTYQEMKTYTFNVALLSIFGK 186 (463)
T ss_pred HHHHcCcccccccC-cHHHHHHHHHHH-HhcChHHHHHHHHHHHHHHHHHHHcCCCCeEEeHHHHHHHHHHHHHHHHcCC
Confidence 22222345788887 999999999999 99999999998888777 34444332 0111
Q ss_pred ---------HHHh----hhccccccccccccccchhhhhhhhHHHHHHHHHHHHHHhhcccccchhccccccHHHhhhc
Q 040924 142 ---------VELV----LARGYFPFIGWIDKLTGMLQRPQNNFQEIDRVYQELIDKHLDPNRAKIEQLQQEDVIDVLLQ 207 (208)
Q Consensus 142 ---------~~~~----~~~~~~p~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~l~~ll~ 207 (208)
.+.. .....+|+ .++. ...++..++.+.+.+++.++|+++++.. .+. .|+++.+++
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~--~~~~~~~~a~~~~~~~~~~~i~~~~~~~----~~~--~d~l~~ll~ 255 (463)
T PLN02196 187 DEVLYREDLKRCYYILEKGYNSMPI--NLPG--TLFHKSMKARKELAQILAKILSKRRQNG----SSH--NDLLGSFMG 255 (463)
T ss_pred CCchHHHHHHHHHHHHhcchhcccc--cCCC--ccchHHHHHHHHHHHHHHHHHHHHhhcC----CCc--ccHHHHHHh
Confidence 1111 01111221 1221 2245677788889999999998876642 122 688887763
No 14
>PF00067 p450: Cytochrome P450 p450 superfamily signature b-class p450 signature mitochondrial p450 signature E-class p450 group I signature E-class p450 group II signature E-class p450 group IV signature; InterPro: IPR001128 Cytochrome P450 enzymes are a superfamily of haem-containing mono-oxygenases that are found in all kingdoms of life, and which show extraordinary diversity in their reaction chemistry. In mammals, these proteins are found primarily in microsomes of hepatocytes and other cell types, where they oxidise steroids, fatty acids and xenobiotics, and are important for the detoxification and clearance of various compounds, as well as for hormone synthesis and breakdown, cholesterol synthesis and vitamin D metabolism. In plants, these proteins are important for the biosynthesis of several compounds such as hormones, defensive compounds and fatty acids. In bacteria, they are important for several metabolic processes, such as the biosynthesis of antibiotic erythromycin in Saccharopolyspora erythraea (Streptomyces erythraeus). Cytochrome P450 enzymes use haem to oxidise their substrates, using protons derived from NADH or NADPH to split the oxygen so a single atom can be added to a substrate. They also require electrons, which they receive from a variety of redox partners. In certain cases, cytochrome P450 can be fused to its redox partner to produce a bi-functional protein, such as with P450BM-3 from Bacillus megaterium [], which has haem and flavin domains. Organisms produce many different cytochrome P450 enzymes (at least 58 in humans), which together with alternative splicing can provide a wide array of enzymes with different substrate and tissue specificities. Individual cytochrome P450 proteins follow the nomenclature: CYP, followed by a number (family), then a letter (subfamily), and another number (protein); e.g. CYP3A4 is the fourth protein in family 3, subfamily A. In general, family members should share >40% identity, while subfamily members should share >55% identity. Cytochrome P450 proteins can also be grouped by two different schemes. One scheme was based on a taxonomic split: class I (prokaryotic/mitochondrial) and class II (eukaryotic microsomes). The other scheme was based on the number of components in the system: class B (3-components) and class E (2-components). These classes merge to a certain degree. Most prokaryotes and mitochondria (and fungal CYP55) have 3-component systems (class I/class B) - a FAD-containing flavoprotein (NAD(P)H-dependent reductase), an iron-sulphur protein and P450. Most eukaryotic microsomes have 2-component systems (class II/class E) - NADPH:P450 reductase (FAD and FMN-containing flavoprotein) and P450. There are exceptions to this scheme, such as 1-component systems that resemble class E enzymes [, , ]. The class E enzymes can be further subdivided into five sequence clusters, groups I-V, each of which may contain more than one cytochrome P450 family (eg, CYP1 and CYP2 are both found in group I). The divergence of the cytochrome P450 superfamily into B- and E-classes, and further divergence into stable clusters within the E-class, appears to be very ancient, occurring before the appearance of eukaryotes. More information about these proteins can be found at Protein of the Month: Cytochrome P450 [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0020037 heme binding, 0055114 oxidation-reduction process; PDB: 2RFC_B 2RFB_A 3EJB_H 3EJE_H 3EJD_H 1N6B_A 1NR6_A 1DT6_A 3EL3_A 3DBG_B ....
Probab=99.86 E-value=8.9e-22 Score=157.55 Aligned_cols=190 Identities=31% Similarity=0.516 Sum_probs=138.9
Q ss_pred CCCCCCCccccccccCCC-CCchHHHHHHHHhhCCeEEEEcCCcCEEEecCHHHHHHHHHHcCccCCCCCChHHHHH--h
Q 040924 11 PPGPWGLPFIGTLHQLDV-SKPHVLFWELSKKYGPLMSLRLGFSPSLVVSSAKMAKEILKTHDLQFCSRPALVAQQK--L 87 (208)
Q Consensus 11 ~pgp~~~p~~g~~~~~~~-~~~~~~~~~~~~~yG~v~~~~~~~~~~v~i~dp~~~~~i~~~~~~~~~~~~~~~~~~~--~ 87 (208)
||||+++|++||+..+.. ++++..+.+++++||+||++++++.++|+|+||+++++|+..++..+..++....... .
T Consensus 1 Ppgp~~~p~~G~~~~~~~~~~~~~~~~~~~~kyG~i~~~~~~~~~~vvv~~pe~~~~il~~~~~~~~~~~~~~~~~~~~~ 80 (463)
T PF00067_consen 1 PPGPPPLPILGNLLQFRRKGNPHEFFRELHKKYGPIFRIWPGGQPIVVVSDPELIKEILRSRSKYFSFRPRPPWFEIFRG 80 (463)
T ss_dssp SSCSSSBTTTBTHHHHHTTHHHHHHHHHHHHHHTSEEEEEETTEEEEEEESHHHHHHHHTTTTTTEEEEHCHHHHHHHHH
T ss_pred CcCCCCcCceeEHHHhcCCCcHHHHHHHHHHHhCCEEEEeEecccccccccchhhccccccccccccccccccccccccc
Confidence 799999999999999853 6788999999999999999999999999999999999999887666665544333332 1
Q ss_pred hcCCcceeeCCCChHHHHHHHHHHHHhhccc-cccccccHHHH------HHHHHhcC-----------------------
Q 040924 88 SYNGLDLAFSPYDEYWREIRKICAIHLFNSN-RGQNFRPIEKM------NLIHQQAS----------------------- 137 (208)
Q Consensus 88 ~~~~~~l~~~~~g~~w~~~Rk~l~~~~f~~~-~l~~~~~~~~~------~~l~~~~~----------------------- 137 (208)
...+.++++++ |+.|+.+|++++ +.|+.. .+ .+.+.+++ +.+.+..+
T Consensus 81 ~~~~~~l~~~~-~~~~~~~R~~~~-~~~~~~~~~-~~~~~i~~~~~~l~~~l~~~~~~~~~vd~~~~~~~~~~d~i~~~~ 157 (463)
T PF00067_consen 81 PFGGKGLFFSD-GERWRRQRRLLA-PAFSSKKIL-KLEPLIDEEAEELIDQLRKKAGSSGPVDLFDWLRRFALDVIGRVL 157 (463)
T ss_dssp HHTTTSSTTSS-HHHHHHHHHHHH-HHHSHHHHH-HHHHHHHHHHHHHHHHHHHTTTSESEEEHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccc-cccccccccccc-ccccccccc-ccccccccccccccccccccccccceeeeeccccccccccccccc
Confidence 34578999998 899999999999 999888 55 77777776 33332221
Q ss_pred ---------hh---HHHHHh------------hhccccccccccccccchhhhhhhhHHHHHHHHHHHHHHhhcccccch
Q 040924 138 ---------RP---LFVELV------------LARGYFPFIGWIDKLTGMLQRPQNNFQEIDRVYQELIDKHLDPNRAKI 193 (208)
Q Consensus 138 ---------~~---~~~~~~------------~~~~~~p~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 193 (208)
+. ++.+.+ .....+|++.+++ ....+....+.+.+.+++.++|+++++..+.+.
T Consensus 158 fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 235 (463)
T PF00067_consen 158 FGKDFGSLDDEDFEEFLEAFDELFELLSNFFWNLPFFFPWLKYLP--TPLFRRFKRARDRLRKYIKEIIEERREELDDGD 235 (463)
T ss_dssp HSSHHHGTTHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHCTSS--HHHHHHHHHHHHHHHHHHHHHHHHHHHSHHSSS
T ss_pred ccceeeecccccccccccccccccccccccccccccccccccccc--ccccccccccccccccccccccccccccccccc
Confidence 01 122222 1122344444443 245677777889999999999999988766421
Q ss_pred hccccccHHHhhhc
Q 040924 194 EQLQQEDVIDVLLQ 207 (208)
Q Consensus 194 ~~~~~~d~l~~ll~ 207 (208)
... .|+++.+|+
T Consensus 236 ~~~--~d~l~~ll~ 247 (463)
T PF00067_consen 236 ESR--RDLLDSLLQ 247 (463)
T ss_dssp SSC--SSHHHHHHH
T ss_pred ccc--ccccccccc
Confidence 233 799998875
No 15
>PLN02500 cytochrome P450 90B1
Probab=99.85 E-value=1.9e-20 Score=151.83 Aligned_cols=195 Identities=13% Similarity=0.148 Sum_probs=128.2
Q ss_pred CCCCCCCCCCCCCccccccccCCC----CCchHHHHHHHHhhCCeEEEEcCCcCEEEecCHHHHHHHHHHcCccCCCCCC
Q 040924 5 RNNTKLPPGPWGLPFIGTLHQLDV----SKPHVLFWELSKKYGPLMSLRLGFSPSLVVSSAKMAKEILKTHDLQFCSRPA 80 (208)
Q Consensus 5 ~~~~~~~pgp~~~p~~g~~~~~~~----~~~~~~~~~~~~~yG~v~~~~~~~~~~v~i~dp~~~~~i~~~~~~~~~~~~~ 80 (208)
+++.+.||||+++|++||+..+.. ..++..+.+++++||+++++++|+.++|+++||+++++||.+++..|..+..
T Consensus 34 ~~~~~~PPgp~~~PiiGn~~~~~~~~~~~~~~~~~~~~~~~yG~v~~~~~g~~~~vvv~~p~~~~~vl~~~~~~f~~~~~ 113 (490)
T PLN02500 34 QKRFNLPPGNMGWPFLGETIGYLKPYSATSIGEFMEQHISRYGKIYRSNLFGEPTIVSADAGLNRFILQNEGRLFECSYP 113 (490)
T ss_pred cCCCCCCCCCcCCCchhhHHHHHhhcccCChHHHHHHHHHHhcccccccccCCCeEEecCHHHHHHHHhCCCCeEEeeCc
Confidence 455678999999999999765422 3466788999999999999999999999999999999999887766754422
Q ss_pred hHHHHHhhcCCcceeeCCCChHHHHHHHHHHHHhhccccccc-cccHHHH---HHHHHhcC-------------------
Q 040924 81 LVAQQKLSYNGLDLAFSPYDEYWREIRKICAIHLFNSNRGQN-FRPIEKM---NLIHQQAS------------------- 137 (208)
Q Consensus 81 ~~~~~~~~~~~~~l~~~~~g~~w~~~Rk~l~~~~f~~~~l~~-~~~~~~~---~~l~~~~~------------------- 137 (208)
... .... ++.++++++ |+.|+++|++++ ++|+...++. +.+.+.+ ..++.+..
T Consensus 114 ~~~-~~~~-g~~~~~~~~-g~~wr~~Rk~~~-~~f~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~vi~ 189 (490)
T PLN02500 114 RSI-GGIL-GKWSMLVLV-GDMHRDMRSISL-NFLSHARLRTHLLKEVERHTLLVLDSWKENSTFSAQDEAKKFTFNLMA 189 (490)
T ss_pred hHH-HHHh-CcccccccC-CHHHHHHHHHHH-HhcChHHHHHHHHHHHHHHHHHHHHHhCCCCCEEehHHHHHHHHHHHH
Confidence 222 2222 235788887 999999999999 9999988876 3555555 22333321
Q ss_pred ---------hhHHHHH---h-hhcccc-ccccccccccchhhhhhhhHHHHHHHHHHHHHHhhcccccch--hccccccH
Q 040924 138 ---------RPLFVEL---V-LARGYF-PFIGWIDKLTGMLQRPQNNFQEIDRVYQELIDKHLDPNRAKI--EQLQQEDV 201 (208)
Q Consensus 138 ---------~~~~~~~---~-~~~~~~-p~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~--~~~~~~d~ 201 (208)
+.+...+ + ...... .....++. ...++..++.+.+.+++.++|+++++....+. ... .|+
T Consensus 190 ~~~fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~--~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~--~d~ 265 (490)
T PLN02500 190 KHIMSMDPGEEETEQLKKEYVTFMKGVVSAPLNFPG--TAYRKALKSRATILKFIERKMEERIEKLKEEDESVEE--DDL 265 (490)
T ss_pred HHHhCCCCCchHHHHHHHHHHHHHhhhhcchhcCCC--cccHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCc--chH
Confidence 0001100 0 000000 00001111 12355666788899999999988876533211 123 689
Q ss_pred HHhhhc
Q 040924 202 IDVLLQ 207 (208)
Q Consensus 202 l~~ll~ 207 (208)
++.+++
T Consensus 266 l~~ll~ 271 (490)
T PLN02500 266 LGWVLK 271 (490)
T ss_pred HHHHHh
Confidence 998874
No 16
>PLN02394 trans-cinnamate 4-monooxygenase
Probab=99.85 E-value=6.2e-20 Score=149.36 Aligned_cols=124 Identities=31% Similarity=0.468 Sum_probs=99.6
Q ss_pred CCCCCCCCCCCCCccccccccCCCCCchHHHHHHHHhhCCeEEEEcCCcCEEEecCHHHHHHHHHHcCccCCCCCChHHH
Q 040924 5 RNNTKLPPGPWGLPFIGTLHQLDVSKPHVLFWELSKKYGPLMSLRLGFSPSLVVSSAKMAKEILKTHDLQFCSRPALVAQ 84 (208)
Q Consensus 5 ~~~~~~~pgp~~~p~~g~~~~~~~~~~~~~~~~~~~~yG~v~~~~~~~~~~v~i~dp~~~~~i~~~~~~~~~~~~~~~~~ 84 (208)
+++.+.||||+++|++|+++.+.....+..+.+++++||+++++++++.+.|+++||+.+++|+.+++..|.+++.....
T Consensus 26 ~~~~~~pPgp~~~p~~g~l~~~~~~~~~~~~~~~~~~yG~v~~i~~g~~~~v~v~dpe~i~~il~~~~~~~~~r~~~~~~ 105 (503)
T PLN02394 26 GKKLKLPPGPAAVPIFGNWLQVGDDLNHRNLAEMAKKYGDVFLLRMGQRNLVVVSSPELAKEVLHTQGVEFGSRTRNVVF 105 (503)
T ss_pred cCcCCCCcCCCCCCeeeeHHhcCCCchhHHHHHHHHHhCCeEEEEcCCeeEEEeCCHHHHHHHHHhCCccccCCCCcchH
Confidence 45678899999999999998773344678999999999999999999999999999999999998877777766543333
Q ss_pred HHhhcCC-cceeeCCCChHHHHHHHHHHHHhhccccccccccHHHH
Q 040924 85 QKLSYNG-LDLAFSPYDEYWREIRKICAIHLFNSNRGQNFRPIEKM 129 (208)
Q Consensus 85 ~~~~~~~-~~l~~~~~g~~w~~~Rk~l~~~~f~~~~l~~~~~~~~~ 129 (208)
..+...+ +++++++ |+.|+++||.++.++|+.+.++.+.+.+++
T Consensus 106 ~~~~g~~~~~l~~~~-g~~w~~~Rk~~~~~~f~~~~l~~~~~~i~~ 150 (503)
T PLN02394 106 DIFTGKGQDMVFTVY-GDHWRKMRRIMTVPFFTNKVVQQYRYGWEE 150 (503)
T ss_pred hHhccCCCceeecCC-CHHHHHHHHHHHHHhcChHHHHHhhHHHHH
Confidence 3333223 3455555 999999999996589999999888887776
No 17
>PLN02774 brassinosteroid-6-oxidase
Probab=99.84 E-value=3.7e-20 Score=149.12 Aligned_cols=191 Identities=14% Similarity=0.169 Sum_probs=130.7
Q ss_pred CCCCCCCCCCCCCCccccccccCCCCCchHHHHHHHHhhCCeEEEEcCCcCEEEecCHHHHHHHHHHcCccCCCCCChHH
Q 040924 4 SRNNTKLPPGPWGLPFIGTLHQLDVSKPHVLFWELSKKYGPLMSLRLGFSPSLVVSSAKMAKEILKTHDLQFCSRPALVA 83 (208)
Q Consensus 4 ~~~~~~~~pgp~~~p~~g~~~~~~~~~~~~~~~~~~~~yG~v~~~~~~~~~~v~i~dp~~~~~i~~~~~~~~~~~~~~~~ 83 (208)
.+++.+.||||+++|++||+..+ ..++...+.+++++||+++++++++.++|+++||+.+++|+.++...|..+.....
T Consensus 26 ~~~r~~~ppgp~~~P~~G~~~~~-~~~~~~~~~~~~~~yG~i~~~~~g~~~~v~i~~p~~~~~il~~~~~~~~~~~~~~~ 104 (463)
T PLN02774 26 RYSKKGLPPGTMGWPLFGETTEF-LKQGPDFMKNQRLRYGSFFKSHILGCPTIVSMDPELNRYILMNEGKGLVPGYPQSM 104 (463)
T ss_pred ccCCCCCCCCCCCCCchhhHHHH-HHhhHHHHHHHHHHhccCccceecCCCeEEEeCHHHHHHHHcCCCCeEEecCCHHH
Confidence 34556788999999999998876 55667789999999999999999999999999999999999877666643322222
Q ss_pred HHHhhcCCcceeeCCCChHHHHHHHHHHHHhhccccccc-cccHHHH---HHHHHhcC------hhHH------------
Q 040924 84 QQKLSYNGLDLAFSPYDEYWREIRKICAIHLFNSNRGQN-FRPIEKM---NLIHQQAS------RPLF------------ 141 (208)
Q Consensus 84 ~~~~~~~~~~l~~~~~g~~w~~~Rk~l~~~~f~~~~l~~-~~~~~~~---~~l~~~~~------~~~~------------ 141 (208)
. .+. ++.|+++++ |+.|+++|++++ ++|+...++. +.+.+++ +.++++.. .+.+
T Consensus 105 ~-~~l-g~~~~~~~~-g~~w~~~R~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 180 (463)
T PLN02774 105 L-DIL-GTCNIAAVH-GSTHRYMRGSLL-SLISPTMIRDHLLPKIDEFMRSHLSGWDGLKTIDIQEKTKEMALLSALKQI 180 (463)
T ss_pred H-HHh-CccchhhcC-CHHHHHHHHHHH-HhcCHHHHHHHHHHHHHHHHHHHHHhhCCCCCEEeeHHHHHHHHHHHHHHH
Confidence 2 222 335788777 999999999998 9999998875 6777776 33443321 0000
Q ss_pred ------------HHHh-hhc-cccccccccccccchhhhhhhhHHHHHHHHHHHHHHhhcccccchhccccccHHHhhhc
Q 040924 142 ------------VELV-LAR-GYFPFIGWIDKLTGMLQRPQNNFQEIDRVYQELIDKHLDPNRAKIEQLQQEDVIDVLLQ 207 (208)
Q Consensus 142 ------------~~~~-~~~-~~~p~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~l~~ll~ 207 (208)
...+ ... ..+....+++. ...++..++.+.+.+++.+.|+++++.. .+. .|+++.+++
T Consensus 181 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~--~~~~~~~~~~~~~~~~~~~~i~~r~~~~----~~~--~d~l~~ll~ 252 (463)
T PLN02774 181 AGTLSKPISEEFKTEFFKLVLGTLSLPIDLPG--TNYRSGVQARKNIVRMLRQLIQERRASG----ETH--TDMLGYLMR 252 (463)
T ss_pred cCCCChHHHHHHHHHHHHHhcccccCCcCCCC--hhhhHHHHHHHHHHHHHHHHHHHHHhcC----CCc--ccHHHHHHh
Confidence 0000 000 00000011221 2245666788889999999998887542 223 689988874
No 18
>PLN03141 3-epi-6-deoxocathasterone 23-monooxygenase; Provisional
Probab=99.84 E-value=5.8e-20 Score=147.64 Aligned_cols=194 Identities=18% Similarity=0.237 Sum_probs=130.4
Q ss_pred CCCCCCCCCCCCCCccccccccCCC----CCchHHHHHHHHhhCCeEEEEcCCcCEEEecCHHHHHHHHHHcCccCCCCC
Q 040924 4 SRNNTKLPPGPWGLPFIGTLHQLDV----SKPHVLFWELSKKYGPLMSLRLGFSPSLVVSSAKMAKEILKTHDLQFCSRP 79 (208)
Q Consensus 4 ~~~~~~~~pgp~~~p~~g~~~~~~~----~~~~~~~~~~~~~yG~v~~~~~~~~~~v~i~dp~~~~~i~~~~~~~~~~~~ 79 (208)
++++.+.||||.++|++||++.+.. .+++.++.+++++||+||++++++.+.|+++||++++++|.+++..|..+.
T Consensus 2 ~~~~~~~Ppg~~~~P~iG~~~~l~~~~~~~~~~~~~~~~~~~yG~i~~~~lg~~~~vvv~~p~~~~~vl~~~~~~~~~~~ 81 (452)
T PLN03141 2 SKKKSRLPKGSLGWPVIGETLDFISCAYSSRPESFMDKRRSLYGKVFKSHIFGTPTIVSTDAEVNKVVLQSDGNAFVPAY 81 (452)
T ss_pred CCCCCCCCCCCCCCCchhhHHHHHhhcccCChHHHHHHHHHHhhheeeeccCCCCEEEEeCHHHhhHHHhCCCCeeeccC
Confidence 5677889999999999999887632 367889999999999999999999999999999999999988877776543
Q ss_pred ChHHHHHhhcCCcceeeCCCChHHHHHHHHHHHHhhcccccccc-ccHHHH---HHHHHhc-C-----------------
Q 040924 80 ALVAQQKLSYNGLDLAFSPYDEYWREIRKICAIHLFNSNRGQNF-RPIEKM---NLIHQQA-S----------------- 137 (208)
Q Consensus 80 ~~~~~~~~~~~~~~l~~~~~g~~w~~~Rk~l~~~~f~~~~l~~~-~~~~~~---~~l~~~~-~----------------- 137 (208)
. .....+. +..|+++++ |+.|+++|++++ ++|+...+..+ .+.+.+ +.++++. +
T Consensus 82 ~-~~~~~l~-g~~~~~~~~-g~~wr~~r~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi 157 (452)
T PLN03141 82 P-KSLTELM-GKSSILLIN-GSLQRRVHGLIG-AFLKSPHLKAQITRDMERYVSESLDSWRDDPPVLVQDETKKIAFEVL 157 (452)
T ss_pred c-hhHHHHh-CcccccccC-cHHHHHHHHHHH-HhcCcHHHHHHHHHHHHHHHHHHHHhccCCCCEEhHHHHHHHHHHHH
Confidence 2 2222332 335788887 999999999999 99987777643 333433 2333322 1
Q ss_pred ---------hhHHHHHh-------hhccccccccccccccchhhhhhhhHHHHHHHHHHHHHHhhcccccchh----ccc
Q 040924 138 ---------RPLFVELV-------LARGYFPFIGWIDKLTGMLQRPQNNFQEIDRVYQELIDKHLDPNRAKIE----QLQ 197 (208)
Q Consensus 138 ---------~~~~~~~~-------~~~~~~p~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~----~~~ 197 (208)
..++..+. .....+|+ .++. ....+..++.+.+.+++..+|+++++....+.. .+
T Consensus 158 ~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~--~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~- 232 (452)
T PLN03141 158 VKALISLEPGEEMEFLKKEFQEFIKGLMSLPI--KLPG--TRLYRSLQAKKRMVKLVKKIIEEKRRAMKNKEEDETGIP- 232 (452)
T ss_pred HHHHcCCCchHHHHHHHHHHHHHhhhHHhCcc--CCCc--hHhHHHHHHHHHHHHHHHHHHHHHHHHHhccCccccCCh-
Confidence 01111111 00111121 1221 123445567889999999999988765432111 13
Q ss_pred cccHHHhhhc
Q 040924 198 QEDVIDVLLQ 207 (208)
Q Consensus 198 ~~d~l~~ll~ 207 (208)
.|+++.+++
T Consensus 233 -~d~l~~ll~ 241 (452)
T PLN03141 233 -KDVVDVLLR 241 (452)
T ss_pred -hhHHHHHHh
Confidence 689988874
No 19
>PLN03018 homomethionine N-hydroxylase
Probab=99.84 E-value=1.5e-19 Score=147.54 Aligned_cols=121 Identities=22% Similarity=0.433 Sum_probs=90.0
Q ss_pred CCCCCCCCCCCCccccccccCCCCCch-HHHHHHHHhh-CCeEEEEcCCcCEEEecCHHHHHHHHHHcCccCCCCCChHH
Q 040924 6 NNTKLPPGPWGLPFIGTLHQLDVSKPH-VLFWELSKKY-GPLMSLRLGFSPSLVVSSAKMAKEILKTHDLQFCSRPALVA 83 (208)
Q Consensus 6 ~~~~~~pgp~~~p~~g~~~~~~~~~~~-~~~~~~~~~y-G~v~~~~~~~~~~v~i~dp~~~~~i~~~~~~~~~~~~~~~~ 83 (208)
+..+.||||+++|++||++.+....+. ..+.++.++| |+|+++++|+.++|+|+||+++++||.+++..|.+++....
T Consensus 37 ~~~~~PPgp~~~P~iGnl~~l~~~~~~~~~~~~~~~~~~g~i~~~~lg~~~~vvvsdpe~ikevl~~~~~~f~~rp~~~~ 116 (534)
T PLN03018 37 RSRQLPPGPPGWPILGNLPELIMTRPRSKYFHLAMKELKTDIACFNFAGTHTITINSDEIAREAFRERDADLADRPQLSI 116 (534)
T ss_pred CCCCCCcCCCCCCeeccHHHhccCCCcchhHHHHHHHhCCCeEEEEeCCccEEEECCHHHHHHHHHhCcHhhcCCCCchh
Confidence 344579999999999999887433332 3455666665 79999999999999999999999999988888988875444
Q ss_pred HHHhhcCCcceeeCCCChHHHHHHHHHHHHhhcccccc-ccccHH
Q 040924 84 QQKLSYNGLDLAFSPYDEYWREIRKICAIHLFNSNRGQ-NFRPIE 127 (208)
Q Consensus 84 ~~~~~~~~~~l~~~~~g~~w~~~Rk~l~~~~f~~~~l~-~~~~~~ 127 (208)
...+..++.+++++++|+.|+++|++++ +.|....+. .+.+++
T Consensus 117 ~~~l~~~~~~i~~~~~G~~Wk~~Rk~l~-~~~~~~~~~~~~~~~~ 160 (534)
T PLN03018 117 METIGDNYKSMGTSPYGEQFMKMKKVIT-TEIMSVKTLNMLEAAR 160 (534)
T ss_pred hhhhccCCCceEecCCCHHHHHHHHHHH-HHhcCHHHHHHHHHHH
Confidence 4333322346888766999999999999 876544443 344443
No 20
>KOG0157 consensus Cytochrome P450 CYP4/CYP19/CYP26 subfamilies [Secondary metabolites biosynthesis, transport and catabolism; Lipid transport and metabolism]
Probab=99.83 E-value=3.4e-20 Score=150.06 Aligned_cols=193 Identities=23% Similarity=0.352 Sum_probs=138.2
Q ss_pred CCCCCCCCCCCccccccccCCCC--CchHHHHHHHHhhCCeEEEEcCCcCEEEecCHHHHHHHHHHcCccCCCCCChH-H
Q 040924 7 NTKLPPGPWGLPFIGTLHQLDVS--KPHVLFWELSKKYGPLMSLRLGFSPSLVVSSAKMAKEILKTHDLQFCSRPALV-A 83 (208)
Q Consensus 7 ~~~~~pgp~~~p~~g~~~~~~~~--~~~~~~~~~~~~yG~v~~~~~~~~~~v~i~dp~~~~~i~~~~~~~~~~~~~~~-~ 83 (208)
..+.+|||.++|++|++..+... ....++.++..+||++|+.|+++.+.|+++||+.+++|+.++...+.+.+.+. .
T Consensus 33 ~~~~~~gp~~~P~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~dp~~~~~Il~~~~~~~~k~~~~~~~ 112 (497)
T KOG0157|consen 33 KKKLPPGPPGWPLIGNLLEFLKPLEEILDFVTELLSRYGPIFKTWLGGKPTVVTTDPELIEEILKSSNENYPKGPDYPES 112 (497)
T ss_pred HhccCCCCCCCCcccchHHhhcchhHHHHHHHHHHHHcCchhhhhhcCeeEEEEcCHHHHHHHHhcCcccCCCchhHHHH
Confidence 35678999999999999888544 56778899999999999999999999999999999999976666665555444 4
Q ss_pred HHHhhcCCcceeeCCCChHHHHHHHHHHHHhhccccccccccHHHH---H---HHHHhc-C-------------------
Q 040924 84 QQKLSYNGLDLAFSPYDEYWREIRKICAIHLFNSNRGQNFRPIEKM---N---LIHQQA-S------------------- 137 (208)
Q Consensus 84 ~~~~~~~~~~l~~~~~g~~w~~~Rk~l~~~~f~~~~l~~~~~~~~~---~---~l~~~~-~------------------- 137 (208)
..... |.|+++++ |+.|+++||+++ |+|+.+.++.+...+.+ . .++..+ +
T Consensus 113 ~~~~l--G~gll~~~-g~~W~~~Rk~~~-~~f~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~tld~i~~ 188 (497)
T KOG0157|consen 113 LKPWL--GDGLLFSD-GEKWHKHRKLLT-PAFHFEILKSFVPVFIESSLILLLLLELAASGEEVDLQDLLKRLTLDIICK 188 (497)
T ss_pred HHHHh--cCccccCC-chHHHHHHhhcc-HhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCeEcHHHHHHHHHHHHHHH
Confidence 44443 67999999 999999999999 99999999998777666 1 111111 1
Q ss_pred --------------hhHHHHHh-------hhccccc-cccccccccchhhhhhhhHHHHHHHHHHHHHHhhcccccchh-
Q 040924 138 --------------RPLFVELV-------LARGYFP-FIGWIDKLTGMLQRPQNNFQEIDRVYQELIDKHLDPNRAKIE- 194 (208)
Q Consensus 138 --------------~~~~~~~~-------~~~~~~p-~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~- 194 (208)
..++..++ ......| +..++..+ +..+++.++...++++++++|++|+++...+..
T Consensus 189 ~~~G~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~~-~~~~~~~~a~~~~~~~~~~iI~~rr~~~~~~~~~ 267 (497)
T KOG0157|consen 189 TAMGPESLDAEGPELFEYVQAFDDLTELISKRINLPLGTKFLYGL-KSERKLKKARKILHDFLEKIIRERREELEKEGSG 267 (497)
T ss_pred HhcCCccccccCCcccHHHHHHHHHHHHHHHHHcCchhhhHHhhc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 11222222 1122334 33333322 257888999999999999999999976532111
Q ss_pred -ccccccHHHh
Q 040924 195 -QLQQEDVIDV 204 (208)
Q Consensus 195 -~~~~~d~l~~ 204 (208)
..+..|+|+.
T Consensus 268 ~~~~~~d~L~~ 278 (497)
T KOG0157|consen 268 EEKKRLDFLDT 278 (497)
T ss_pred ccchhhhHHHH
Confidence 1112678874
No 21
>PLN02987 Cytochrome P450, family 90, subfamily A
Probab=99.82 E-value=2.1e-19 Score=144.83 Aligned_cols=194 Identities=17% Similarity=0.192 Sum_probs=126.0
Q ss_pred CCCCCCCCCCCccccccccCCC----CCchHHHHHHHHhhCCeEEEEcCCcCEEEecCHHHHHHHHHHcCccCCCCCChH
Q 040924 7 NTKLPPGPWGLPFIGTLHQLDV----SKPHVLFWELSKKYGPLMSLRLGFSPSLVVSSAKMAKEILKTHDLQFCSRPALV 82 (208)
Q Consensus 7 ~~~~~pgp~~~p~~g~~~~~~~----~~~~~~~~~~~~~yG~v~~~~~~~~~~v~i~dp~~~~~i~~~~~~~~~~~~~~~ 82 (208)
+...||||.++|++||++.+.. .+++..+.+++++||+++++++++.+.|+++||+++++|+.++.+.|.++....
T Consensus 28 ~~~lppgp~~~P~iG~~~~~~~~~~~~~~~~~~~~~~~~yG~v~~~~l~~~~~vvv~~pe~~~~il~~~~~~f~~~~~~~ 107 (472)
T PLN02987 28 RMRLPPGSLGLPLVGETLQLISAYKTENPEPFIDERVARYGSLFMTHLFGEPTVFSADPETNRFILQNEGKLFECSYPGS 107 (472)
T ss_pred CCCCcCCCcCCCchhhHHHHHhhcccCChHHHHHHHHHHhchhhhhhhcCCCeEEEeCHHHHHHHHhCCCceEEecCcHH
Confidence 4557899999999999987632 457888899999999999999999999999999999999988777775543222
Q ss_pred HHHHhhcCCcceeeCCCChHHHHHHHHHHHHhhccccccccccH-HHH---HHHHHhcC---------------------
Q 040924 83 AQQKLSYNGLDLAFSPYDEYWREIRKICAIHLFNSNRGQNFRPI-EKM---NLIHQQAS--------------------- 137 (208)
Q Consensus 83 ~~~~~~~~~~~l~~~~~g~~w~~~Rk~l~~~~f~~~~l~~~~~~-~~~---~~l~~~~~--------------------- 137 (208)
.. .+. ++.|+++++ |+.|+++|++++ ++++.+.++.+... +.+ ..++.+.+
T Consensus 108 ~~-~~l-g~~~l~~~~-g~~wr~~R~~~~-~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~t~~vi~~~~f 183 (472)
T PLN02987 108 IS-NLL-GKHSLLLMK-GNLHKKMHSLTM-SFANSSIIKDHLLLDIDRLIRFNLDSWSSRVLLMEEAKKITFELTVKQLM 183 (472)
T ss_pred HH-HHh-CcccccccC-cHHHHHHHHHHH-HhcChHHHHHHHHHHHHHHHHHHHHhhccceehHHHHHHHHHHHHHHHHc
Confidence 22 222 346899997 999999999987 65454444443211 111 22232211
Q ss_pred -------hhHHHHHh-hhccccccccccccccchhhhhhhhHHHHHHHHHHHHHHhhcccccchhccccccHHHhhhc
Q 040924 138 -------RPLFVELV-LARGYFPFIGWIDKLTGMLQRPQNNFQEIDRVYQELIDKHLDPNRAKIEQLQQEDVIDVLLQ 207 (208)
Q Consensus 138 -------~~~~~~~~-~~~~~~p~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~l~~ll~ 207 (208)
.+.+.+.+ .....+. ..+++.+.+..++..++.+.+.+++.++|+++++....+.... .|+++.|++
T Consensus 184 g~~~~~~~~~~~~~~~~~~~~~~-~~~~p~l~~~~~~~~~~~~~~~~~~~~~i~~r~~~~~~~~~~~--~d~l~~ll~ 258 (472)
T PLN02987 184 SFDPGEWTESLRKEYVLVIEGFF-SVPLPLFSTTYRRAIQARTKVAEALTLVVMKRRKEEEEGAEKK--KDMLAALLA 258 (472)
T ss_pred CCCChHHHHHHHHHHHHHHhhhh-cCCCcCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhccCccc--ccHHHHHHh
Confidence 01111111 0000000 0011211234667788899999999999999877543211223 699998875
No 22
>KOG0159 consensus Cytochrome P450 CYP11/CYP12/CYP24/CYP27 subfamilies [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.80 E-value=1.1e-18 Score=136.67 Aligned_cols=181 Identities=20% Similarity=0.315 Sum_probs=138.5
Q ss_pred CCCCCCCCCCCCcccccccc---CCCCCchHHHHHHHHhhCCeEEEE-cCCcCEEEecCHHHHHHHHHHcCccCCCCC--
Q 040924 6 NNTKLPPGPWGLPFIGTLHQ---LDVSKPHVLFWELSKKYGPLMSLR-LGFSPSLVVSSAKMAKEILKTHDLQFCSRP-- 79 (208)
Q Consensus 6 ~~~~~~pgp~~~p~~g~~~~---~~~~~~~~~~~~~~~~yG~v~~~~-~~~~~~v~i~dp~~~~~i~~~~~~~~~~~~-- 79 (208)
++...+|||.++|++|.++. ....+.|+...+.+++||+||+.. +|+.+.|.+.||+.++.+|.+++ .|+.|+
T Consensus 47 r~~~~IP~p~~~~~l~~l~~~~~~~~~~lh~~~~~~~~~YG~I~~~~~~G~~~~V~v~~p~d~E~v~r~EG-~~P~Rp~~ 125 (519)
T KOG0159|consen 47 RPFEEIPGPKGLPFLGLLWIWRAGGATKLHQHIVQLHQKYGPIFREGMLGRVDLVHVYNPDDVEKVFRNEG-KYPFRPLL 125 (519)
T ss_pred CChhhcCCCCCccHHHHHHHHHhhhhhHHHHHHHHHHHHcCceeeeccCCCCCeEEeeCHHHHHHHHhcCC-CCCCcccc
Confidence 45667899999999999884 223678999999999999999999 88899999999999999998765 567774
Q ss_pred --ChHHHHHhhcCCcceeeCCCChHHHHHHHHHHHHhhccccccccccHHHH------HHHHHhcC--------------
Q 040924 80 --ALVAQQKLSYNGLDLAFSPYDEYWREIRKICAIHLFNSNRGQNFRPIEKM------NLIHQQAS-------------- 137 (208)
Q Consensus 80 --~~~~~~~~~~~~~~l~~~~~g~~w~~~Rk~l~~~~f~~~~l~~~~~~~~~------~~l~~~~~-------------- 137 (208)
.+..+........|+++.+ |++|.+.|..++...+.+++++.|.|.+++ +.++...+
T Consensus 126 ~~~w~~~rd~~~~~~Gl~~~~-G~~W~~~Rs~ln~~ll~P~~v~~yl~~l~~V~~DF~~~l~~~r~~~~~~~~~D~~~~l 204 (519)
T KOG0159|consen 126 IEPWVAYRDFRGGVCGLFLLE-GPEWQRLRSALNPLLLQPQAVRRYLPQLNAVSDDFVERLRAQRDPERGELVPDFAQEL 204 (519)
T ss_pred cchhhhhHHhhccCCCcccCC-CHHHHHHHHHhchhhcCHHHHHHHhhHHHHHHHHHHHHHHHHhcccccccchhHHHHH
Confidence 1333444555567999998 999999999999677899999999998888 33332211
Q ss_pred ------------------------hhH---HHHHh-------hhccccc-cccccccccchhhhhhhhHHHHHHHHHHHH
Q 040924 138 ------------------------RPL---FVELV-------LARGYFP-FIGWIDKLTGMLQRPQNNFQEIDRVYQELI 182 (208)
Q Consensus 138 ------------------------~~~---~~~~~-------~~~~~~p-~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i 182 (208)
+++ |.+++ ....+.| ++++++ ++.++++.++.+.+.++.+..|
T Consensus 205 ~~wslEsi~~V~l~~rlG~L~~~~~~~a~~fi~ai~~~F~~s~~l~~~p~l~r~~~--t~~wk~~~~~~D~i~~~~~~~I 282 (519)
T KOG0159|consen 205 YRWSLESICLVLLGTRLGLLGESPPSEAQQFIDAIKKMFESSAQLMLMPSLWRYFP--TKVWKDFVRAWDQIFDVGDKYI 282 (519)
T ss_pred HHHHHHHHHHHHHhcccccccCCCCHHHHHHHHHHHHHHHhHHHHHhcchHHHhCC--ChHHHHHHHHHHHHHHHHHHHH
Confidence 122 22222 2233455 444454 6789999999999999999999
Q ss_pred HHhhcccc
Q 040924 183 DKHLDPNR 190 (208)
Q Consensus 183 ~~~~~~~~ 190 (208)
+.+.+..+
T Consensus 283 d~~l~~l~ 290 (519)
T KOG0159|consen 283 DNALEELE 290 (519)
T ss_pred HHHHHHHH
Confidence 98877654
No 23
>PLN02302 ent-kaurenoic acid oxidase
Probab=99.79 E-value=2.8e-18 Score=139.32 Aligned_cols=197 Identities=17% Similarity=0.254 Sum_probs=127.3
Q ss_pred CCCCCCCCCCCCCCccccccccCC----CCCchHHHHHHHHhhCC--eEEEEcCCcCEEEecCHHHHHHHHHHcCccCCC
Q 040924 4 SRNNTKLPPGPWGLPFIGTLHQLD----VSKPHVLFWELSKKYGP--LMSLRLGFSPSLVVSSAKMAKEILKTHDLQFCS 77 (208)
Q Consensus 4 ~~~~~~~~pgp~~~p~~g~~~~~~----~~~~~~~~~~~~~~yG~--v~~~~~~~~~~v~i~dp~~~~~i~~~~~~~~~~ 77 (208)
..+..+.||||+++|++|+++.+. .++++..+.+++++||+ ++++++++.+.|+++||+++++|+.++ +.|.+
T Consensus 37 ~~~~~~lpPgp~~~PilG~l~~~~~~~~~~~~~~~~~~~~~kyG~~~i~~~~~~~~~~vvv~~pe~~~~vl~~~-~~f~~ 115 (490)
T PLN02302 37 GEGQPPLPPGDLGWPVIGNMWSFLRAFKSSNPDSFIASFISRYGRTGIYKAFMFGQPTVLVTTPEACKRVLTDD-DAFEP 115 (490)
T ss_pred ccCCCCCcCCCCCCCccccHHHHHHhcccCCcHHHHHHHHHHhCCCcceeeecCCCCeEEEcCHHHHHHHHcCC-Ccccc
Confidence 344567899999999999988763 24678899999999997 789999999999999999999999765 45544
Q ss_pred CCChHHHHHhhcCCcceeeCCCChHHHHHHHHHHHHhhc-cccccccccHHHH---HHHHHhcC------hhHHHHHh--
Q 040924 78 RPALVAQQKLSYNGLDLAFSPYDEYWREIRKICAIHLFN-SNRGQNFRPIEKM---NLIHQQAS------RPLFVELV-- 145 (208)
Q Consensus 78 ~~~~~~~~~~~~~~~~l~~~~~g~~w~~~Rk~l~~~~f~-~~~l~~~~~~~~~---~~l~~~~~------~~~~~~~~-- 145 (208)
+....... . .+..+++.++ |+.|+++|++++ +.|+ .+.++.+.+.+.+ +.++.+.+ .+.+..+.
T Consensus 116 ~~~~~~~~-~-~g~~~~~~~~-g~~w~~~R~~~~-~~f~~~~~l~~~~~~i~~~v~~~~~~~~~~~~v~~~~~~~~~~~~ 191 (490)
T PLN02302 116 GWPESTVE-L-IGRKSFVGIT-GEEHKRLRRLTA-APVNGPEALSTYIPYIEENVKSCLEKWSKMGEIEFLTELRKLTFK 191 (490)
T ss_pred CCchhHHH-H-hccccccccC-cHHHHHHHHHHH-hccCCHHHHHHHHHHHHHHHHHHHHHhcCCCCEehHHHHHHHHHH
Confidence 42222222 2 2234456666 999999999999 9885 6788888888887 44444321 11111111
Q ss_pred -------------------h-hcccccccccc-cccc-chhhhhhhhHHHHHHHHHHHHHHhhcccccch-hccccccHH
Q 040924 146 -------------------L-ARGYFPFIGWI-DKLT-GMLQRPQNNFQEIDRVYQELIDKHLDPNRAKI-EQLQQEDVI 202 (208)
Q Consensus 146 -------------------~-~~~~~p~l~~l-~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~d~l 202 (208)
. .......+..+ ..++ ...++..++.+.+.+++.+.|+++++....+. .+. .|++
T Consensus 192 vi~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~--~d~l 269 (490)
T PLN02302 192 IIMYIFLSSESELVMEALEREYTTLNYGVRAMAINLPGFAYHRALKARKKLVALFQSIVDERRNSRKQNISPRK--KDML 269 (490)
T ss_pred HHHHHHcCCCChHHHHHHHHHHHHHHHHhhhCCcCCCchhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCc--CCHH
Confidence 0 00000000000 0111 12344556677888999999988876543211 123 6899
Q ss_pred Hhhhc
Q 040924 203 DVLLQ 207 (208)
Q Consensus 203 ~~ll~ 207 (208)
+.|++
T Consensus 270 ~~ll~ 274 (490)
T PLN02302 270 DLLLD 274 (490)
T ss_pred HHHHh
Confidence 88874
No 24
>PLN02169 fatty acid (omega-1)-hydroxylase/midchain alkane hydroxylase
Probab=99.79 E-value=1.3e-18 Score=141.31 Aligned_cols=192 Identities=16% Similarity=0.196 Sum_probs=123.3
Q ss_pred CCCCCCCCccccccccCCCC--CchHHHHHHHHhhCCeEE---EEcCCcCEEEecCHHHHHHHHHHcCccCCCCCChHHH
Q 040924 10 LPPGPWGLPFIGTLHQLDVS--KPHVLFWELSKKYGPLMS---LRLGFSPSLVVSSAKMAKEILKTHDLQFCSRPALVAQ 84 (208)
Q Consensus 10 ~~pgp~~~p~~g~~~~~~~~--~~~~~~~~~~~~yG~v~~---~~~~~~~~v~i~dp~~~~~i~~~~~~~~~~~~~~~~~ 84 (208)
..|||+++|++||+..+... ..++++.+...+||..++ .++|+.++|+|+||+++++||.++.+.|.+++.....
T Consensus 32 ~~p~p~~~pl~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~vvv~dpe~i~~il~~~~~~~~k~~~~~~~ 111 (500)
T PLN02169 32 GQPILKNWPFLGMLPGMLHQIPRIYDWTVEVLEASNLTFYFKGPWLSGTDMLFTADPKNIHHILSSNFGNYPKGPEFKKI 111 (500)
T ss_pred CCCCCCCCCcccchHHHHHccCcHHHHHHHHHHhCCCcEEEEeeccCCCCeEEEcCHHHHHHHHhhCcccCCCcHHHHHH
Confidence 47899999999998766322 234555555556886655 5778899999999999999998877777765432222
Q ss_pred HHhhcCCcceeeCCCChHHHHHHHHHHHHhhcccccccc--ccHHHH------HHHHHhc--C-----------------
Q 040924 85 QKLSYNGLDLAFSPYDEYWREIRKICAIHLFNSNRGQNF--RPIEKM------NLIHQQA--S----------------- 137 (208)
Q Consensus 85 ~~~~~~~~~l~~~~~g~~w~~~Rk~l~~~~f~~~~l~~~--~~~~~~------~~l~~~~--~----------------- 137 (208)
.. ..|+|+++++ |+.|+++||+++ |+|+...+..+ .+.+++ +.+++.+ +
T Consensus 112 ~~--~~g~gl~~~~-g~~Wr~~Rk~l~-p~F~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~~~~~~t~dvi 187 (500)
T PLN02169 112 FD--VLGEGILTVD-FELWEDLRKSNH-ALFHNQDFIELSLSSNKSKLKEGLVPFLDNAAHENIIIDLQDVFMRFMFDTS 187 (500)
T ss_pred HH--hhcCcccccC-cHHHHHHHHHHH-HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCeEeHHHHHHHHHHHHH
Confidence 22 2478999998 999999999999 99998876532 233322 3333221 1
Q ss_pred -----------------hhHHHHHh-------hhccccccccc-cc-cc-cchhhhhhhhHHHHHHHHHHHHHHhhcccc
Q 040924 138 -----------------RPLFVELV-------LARGYFPFIGW-ID-KL-TGMLQRPQNNFQEIDRVYQELIDKHLDPNR 190 (208)
Q Consensus 138 -----------------~~~~~~~~-------~~~~~~p~l~~-l~-~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 190 (208)
..++.+++ ....+.|++.+ ++ ++ .+..++..++.+.+++++.++|+++++...
T Consensus 188 ~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~r~~~~~ 267 (500)
T PLN02169 188 SILMTGYDPMSLSIEMLEVEFGEAADIGEEAIYYRHFKPVILWRLQNWIGIGLERKMRTALATVNRMFAKIISSRRKEEI 267 (500)
T ss_pred HhheeCCCccccCCCCCCCHHHHHHHHHHHHHHhHHhccHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 01222222 11123343221 11 11 234567788999999999999998876421
Q ss_pred -cc--hhccccccHHHhhhc
Q 040924 191 -AK--IEQLQQEDVIDVLLQ 207 (208)
Q Consensus 191 -~~--~~~~~~~d~l~~ll~ 207 (208)
.+ .... .|+|+.+++
T Consensus 268 ~~~~~~~~~--~d~l~~ll~ 285 (500)
T PLN02169 268 SRAETEPYS--KDALTYYMN 285 (500)
T ss_pred ccccccCCC--cCHHHHHHh
Confidence 10 0112 689988875
No 25
>KOG0158 consensus Cytochrome P450 CYP3/CYP5/CYP6/CYP9 subfamilies [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.77 E-value=1.4e-18 Score=137.93 Aligned_cols=121 Identities=27% Similarity=0.428 Sum_probs=94.7
Q ss_pred CCCCCCCCCCCCccccccccCCCC-CchHHHHHHHHhhCCeEEEEcCCcCEEEecCHHHHHHHHHHcCccCCCCCChHHH
Q 040924 6 NNTKLPPGPWGLPFIGTLHQLDVS-KPHVLFWELSKKYGPLMSLRLGFSPSLVVSSAKMAKEILKTHDLQFCSRPALVAQ 84 (208)
Q Consensus 6 ~~~~~~pgp~~~p~~g~~~~~~~~-~~~~~~~~~~~~yG~v~~~~~~~~~~v~i~dp~~~~~i~~~~~~~~~~~~~~~~~ 84 (208)
...+.+|||+++|++||+..+... .......+...++|+++.++.+..+.++|+||++|++|+.+..++|..+. ....
T Consensus 28 w~rrGi~~~~p~p~~Gn~~~~~~~~~~~~~~~~~~~~~~~~~G~y~~~~p~l~v~D~elik~I~ik~F~~F~~r~-~~~~ 106 (499)
T KOG0158|consen 28 WRRRGIPGPKPLPFLGNLPGMLKRERPGDLLLDIYTKYRPVVGIYEGRQPALLVSDPELIKEILIKDFDNFYNRK-RPIY 106 (499)
T ss_pred hccCCCCCCCCCCcEecHHHHHhccCcHHHHHHHHhcCCCEEEEEecCCcceEecCHHHHHHHHHHhCccCcCCC-CCCc
Confidence 345588999999999999888542 22333333333449999999999999999999999999999999998843 1111
Q ss_pred HHh--hcCCcceeeCCCChHHHHHHHHHHHHhhccccccccccHHHH
Q 040924 85 QKL--SYNGLDLAFSPYDEYWREIRKICAIHLFNSNRGQNFRPIEKM 129 (208)
Q Consensus 85 ~~~--~~~~~~l~~~~~g~~w~~~Rk~l~~~~f~~~~l~~~~~~~~~ 129 (208)
..- .....++++++ |+.||+.|..++ |+|+++.|+.+.|++++
T Consensus 107 ~d~~~~l~~~~Lf~~~-g~~WK~lR~~ls-P~Fts~kmk~m~~t~~~ 151 (499)
T KOG0158|consen 107 GDPEDPLSALNLFFLR-GERWKRLRTKLS-PTFTSGKLKKMFPTMEE 151 (499)
T ss_pred CCCCCcccccCchhcc-CchHHHHHHhhc-cccchhhHHHHHHHHHH
Confidence 111 12236788888 999999999999 99999999999999999
No 26
>PLN02738 carotene beta-ring hydroxylase
Probab=99.76 E-value=9.6e-18 Score=138.99 Aligned_cols=119 Identities=19% Similarity=0.239 Sum_probs=92.3
Q ss_pred CCCCCCCCCCCcc----------------ccccccCCCCCchHHHHHHHHhhCCeEEEEcCCcCEEEecCHHHHHHHHHH
Q 040924 7 NTKLPPGPWGLPF----------------IGTLHQLDVSKPHVLFWELSKKYGPLMSLRLGFSPSLVVSSAKMAKEILKT 70 (208)
Q Consensus 7 ~~~~~pgp~~~p~----------------~g~~~~~~~~~~~~~~~~~~~~yG~v~~~~~~~~~~v~i~dp~~~~~i~~~ 70 (208)
.+..+|||+.-.+ .||+..+..+..+..+.+++++||||+++++|+.++|+|+||+.+++||..
T Consensus 113 ~~~~~pgp~laa~t~~ye~y~~~~~~~~~~G~l~~i~~g~~~~~l~~lh~kYGpI~ri~lGp~~~vvIsDpe~i~eIl~~ 192 (633)
T PLN02738 113 AKLGPPGELLAFLFTWVEAGEGYPKIPEAKGSISAVRGEAFFIPLYELFLTYGGIFRLTFGPKSFLIVSDPSIAKHILRD 192 (633)
T ss_pred hhCCCCCchHHHHHcccccccccccCccccCcHHHhcCchHHHHHHHHHHHhCCEEEEEeCCCCEEEECCHHHHHHHHhh
Confidence 4556899973211 244344434667889999999999999999998899999999999999987
Q ss_pred cCccCCCCCChHHHHHhhcCCcceeeCCCChHHHHHHHHHHHHhhccccccccccHHHH
Q 040924 71 HDLQFCSRPALVAQQKLSYNGLDLAFSPYDEYWREIRKICAIHLFNSNRGQNFRPIEKM 129 (208)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~w~~~Rk~l~~~~f~~~~l~~~~~~~~~ 129 (208)
++..|.+++....... ..+.|+++++ |+.|+++|+.++ ++|+.+.+..+.+++.+
T Consensus 193 ~~~~f~k~~~~~~~~~--~~g~~l~~~d-ge~wr~rRr~l~-p~Fs~~~v~~l~~~i~~ 247 (633)
T PLN02738 193 NSKAYSKGILAEILEF--VMGKGLIPAD-GEIWRVRRRAIV-PALHQKYVAAMISLFGQ 247 (633)
T ss_pred CcccCCCcchHHHHhh--ccCCceecCC-cHHHHHHHHhcc-HhhhHHHHHHHHHHHHH
Confidence 7666765533222222 2357888887 999999999999 99999999998888877
No 27
>PLN02936 epsilon-ring hydroxylase
Probab=99.74 E-value=1.6e-17 Score=134.73 Aligned_cols=117 Identities=17% Similarity=0.212 Sum_probs=93.3
Q ss_pred CCCCCCCCCccccccccCC----CCCchHHHHHHHHhhCCeEEEEcCCcCEEEecCHHHHHHHHHHcCccCCCCCChHHH
Q 040924 9 KLPPGPWGLPFIGTLHQLD----VSKPHVLFWELSKKYGPLMSLRLGFSPSLVVSSAKMAKEILKTHDLQFCSRPALVAQ 84 (208)
Q Consensus 9 ~~~pgp~~~p~~g~~~~~~----~~~~~~~~~~~~~~yG~v~~~~~~~~~~v~i~dp~~~~~i~~~~~~~~~~~~~~~~~ 84 (208)
++-.|..|||++|+.+... .+.++..+.+|+++||+++++++|+.+.|+++||+++++|+.+.+..|.+++.....
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvv~~pe~~~~il~~~~~~f~~~~~~~~~ 91 (489)
T PLN02936 12 RLWGDDSGIPVADAKLEDVTDLLGGALFLPLFKWMNEYGPVYRLAAGPRNFVVVSDPAIAKHVLRNYGSKYAKGLVAEVS 91 (489)
T ss_pred ccCCCCCCCccHHhHHhhHHHHhccHHHHHHHHHHHHcCCEEEEccCCccEEEEcCHHHHHHHHHhccccccCcchhhhh
Confidence 3446788999999876664 367889999999999999999999999999999999999998776778765432222
Q ss_pred HHhhcCCcceeeCCCChHHHHHHHHHHHHhhcccccccccc-HHHH
Q 040924 85 QKLSYNGLDLAFSPYDEYWREIRKICAIHLFNSNRGQNFRP-IEKM 129 (208)
Q Consensus 85 ~~~~~~~~~l~~~~~g~~w~~~Rk~l~~~~f~~~~l~~~~~-~~~~ 129 (208)
..+ .+.++++++ |+.|+++||+++ ++|+...+..+.+ ++.+
T Consensus 92 ~~~--~~~~i~~~~-g~~wk~~Rk~l~-~~f~~~~l~~~~~~~~~~ 133 (489)
T PLN02936 92 EFL--FGSGFAIAE-GELWTARRRAVV-PSLHRRYLSVMVDRVFCK 133 (489)
T ss_pred HHH--hcCccccCC-chHHHHHHHhhc-CccCHHHHHHHHHHHHHH
Confidence 222 357888887 999999999999 9999888876643 4443
No 28
>PLN03195 fatty acid omega-hydroxylase; Provisional
Probab=99.72 E-value=7.5e-17 Score=131.71 Aligned_cols=113 Identities=18% Similarity=0.238 Sum_probs=88.1
Q ss_pred CCCCCCCCCccccccccCCCCCchHHHHHHHHhh---CCeEEEEcCCcCEEEecCHHHHHHHHHHcCccCCCCCChH-HH
Q 040924 9 KLPPGPWGLPFIGTLHQLDVSKPHVLFWELSKKY---GPLMSLRLGFSPSLVVSSAKMAKEILKTHDLQFCSRPALV-AQ 84 (208)
Q Consensus 9 ~~~pgp~~~p~~g~~~~~~~~~~~~~~~~~~~~y---G~v~~~~~~~~~~v~i~dp~~~~~i~~~~~~~~~~~~~~~-~~ 84 (208)
+.+|||+++|++||++.+.. .+..+.+|.++| |+++++++++.+.|+++||+++++|+.++...|.++.... ..
T Consensus 30 ~~~pgp~~~p~~G~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~i~~p~~~~~il~~~~~~~~~~~~~~~~~ 107 (516)
T PLN03195 30 RNRKGPKSWPIIGAALEQLK--NYDRMHDWLVEYLSKDRTVVVKMPFTTYTYIADPVNVEHVLKTNFANYPKGEVYHSYM 107 (516)
T ss_pred cccCCCCCCCeecchHHHHh--ccchHHHHHHHHhccCCcEEEeeCCCCceEecCHHHHHHHHhhCccccCCcHhHHHHH
Confidence 34799999999999876532 234566777777 8999999999999999999999999987655665443221 11
Q ss_pred HHhhcCCcceeeCCCChHHHHHHHHHHHHhhccccccccccHH
Q 040924 85 QKLSYNGLDLAFSPYDEYWREIRKICAIHLFNSNRGQNFRPIE 127 (208)
Q Consensus 85 ~~~~~~~~~l~~~~~g~~w~~~Rk~l~~~~f~~~~l~~~~~~~ 127 (208)
..+ .++|+++++ |+.|+++||+++ ++|+.++++.+.+.+
T Consensus 108 ~~~--~g~~l~~~~-g~~w~~~Rr~l~-~~fs~~~l~~~~~~~ 146 (516)
T PLN03195 108 EVL--LGDGIFNVD-GELWRKQRKTAS-FEFASKNLRDFSTVV 146 (516)
T ss_pred HHH--hcCeeeccC-cHHHHHHHHhcc-hhhhHHHHHHHHHHH
Confidence 222 357888887 999999999999 999999999988865
No 29
>PLN02648 allene oxide synthase
Probab=99.57 E-value=2.6e-15 Score=120.91 Aligned_cols=124 Identities=15% Similarity=0.279 Sum_probs=94.0
Q ss_pred CCCCCCCCCCCCccccccccCC----CCCchHHHHHHHHhhCC-eEEEEcCCcCE-------EEecCHHHHHHHHHH---
Q 040924 6 NNTKLPPGPWGLPFIGTLHQLD----VSKPHVLFWELSKKYGP-LMSLRLGFSPS-------LVVSSAKMAKEILKT--- 70 (208)
Q Consensus 6 ~~~~~~pgp~~~p~~g~~~~~~----~~~~~~~~~~~~~~yG~-v~~~~~~~~~~-------v~i~dp~~~~~i~~~--- 70 (208)
.+.+.|||+.++|++|++..+. ..++..++.+..++||+ ||+++++|.++ |+++||+.++.||.+
T Consensus 14 ~~~~~PPg~~g~P~iG~~~~~~~~~~~~~~~~F~~~~~~kyG~~vfk~~l~g~p~~~~~~~~v~~~~~e~~~~v~~~~~~ 93 (480)
T PLN02648 14 LPLREIPGSYGLPFLGAIKDRLDYFYFQGEDEFFRSRVEKYKSTVFRVNMPPGPFIAPDPRVIALLDQKSFPVLFDVSKV 93 (480)
T ss_pred CCCCCCCCCCCCcCcchhhhhhhHHHhcChHHHHHHHHHHhCCceEEecCCCCCCCCCCCCEEEEEcCCceeeeecchhc
Confidence 3567799999999999997653 34567899999999999 99999988655 999999999999974
Q ss_pred -cCccCCCCCChHHHHHhhcCCc---ceeeCCCChHHHHHHHHHHHHhhccccccccccHHHH---HHHHHh
Q 040924 71 -HDLQFCSRPALVAQQKLSYNGL---DLAFSPYDEYWREIRKICAIHLFNSNRGQNFRPIEKM---NLIHQQ 135 (208)
Q Consensus 71 -~~~~~~~~~~~~~~~~~~~~~~---~l~~~~~g~~w~~~Rk~l~~~~f~~~~l~~~~~~~~~---~~l~~~ 135 (208)
+.+.+... ++....+ .+++ +++..+ |+.|+++|++++ ++|+ ..++.|.+.|.+ ++++.|
T Consensus 94 ~~~~~~~~~--~~~~~~l-~G~~~~~s~~~~~-g~~H~r~Rrll~-~~f~-~~~~~~~~~m~~~~~~~~~~w 159 (480)
T PLN02648 94 DKRDVFTGT--YMPSTAF-TGGYRVLSYLDPS-EPKHAKLKSFLF-ELLK-SRHRRFIPEFRAAFAELFDTW 159 (480)
T ss_pred cccccceee--eccCccc-cCCceeeeecCCC-CchHHHHHHHHH-HHHH-HhhhhhhhHHHHHHHHHHHHH
Confidence 33334321 1211122 2344 677777 999999999999 9999 577889998888 444544
No 30
>PLN02426 cytochrome P450, family 94, subfamily C protein
Probab=99.47 E-value=1.2e-12 Score=106.67 Aligned_cols=179 Identities=13% Similarity=0.129 Sum_probs=114.6
Q ss_pred CccccccccCCCCCchHHHHHHHHhhC-CeEEEEcCCcCEEEecCHHHHHHHHHHcCccCCCCCCh-HHHHHhhcCCcce
Q 040924 17 LPFIGTLHQLDVSKPHVLFWELSKKYG-PLMSLRLGFSPSLVVSSAKMAKEILKTHDLQFCSRPAL-VAQQKLSYNGLDL 94 (208)
Q Consensus 17 ~p~~g~~~~~~~~~~~~~~~~~~~~yG-~v~~~~~~~~~~v~i~dp~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~l 94 (208)
.++.|+.... ..+.+.++..+.++++ .+++++..+. |+++||+.+++|+..+.+.|.+.... .....+ .|+|+
T Consensus 49 ~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~--iv~~dpe~i~~vl~~~~~~~~k~~~~~~~~~~~--~g~gi 123 (502)
T PLN02426 49 AYLTASWAKD-FDNLCDWYAHLLRRSPTGTIHVHVLGN--TITANPENVEYMLKTRFDNYPKGKPFSAILGDL--LGRGI 123 (502)
T ss_pred CCccHHHHHh-cccHHHHHHHHHHhCCCcEEEEecCCc--EEecCHHHHHHHHhhChhcCCCcHhHHHHHHHh--cCCce
Confidence 5677887654 3456777777888877 4677765443 89999999999998776677654322 222222 36899
Q ss_pred eeCCCChHHHHHHHHHHHHhhccccccccc--cHHHH------HHHHHhc----C-------------------------
Q 040924 95 AFSPYDEYWREIRKICAIHLFNSNRGQNFR--PIEKM------NLIHQQA----S------------------------- 137 (208)
Q Consensus 95 ~~~~~g~~w~~~Rk~l~~~~f~~~~l~~~~--~~~~~------~~l~~~~----~------------------------- 137 (208)
++++ |+.|+++||+++ ++|+.+.++.+. +++++ +.+++.+ +
T Consensus 124 ~~~~-g~~wk~~Rk~l~-~~fs~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~vd~~~~~~~~t~dvi~~~~fG~~ 201 (502)
T PLN02426 124 FNVD-GDSWRFQRKMAS-LELGSVSIRSYAFEIVASEIESRLLPLLSSAADDGEGAVLDLQDVFRRFSFDNICKFSFGLD 201 (502)
T ss_pred eecC-cHHHHHHHHHhH-hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEcHHHHHHHHHHHHHHHHHhCCC
Confidence 9998 999999999999 999999888763 45444 2332211 1
Q ss_pred ---------hhHHHHHh---------hhcccccccccc-ccc-cchhhhhhhhHHHHHHHHHHHHHHhhcccccchhccc
Q 040924 138 ---------RPLFVELV---------LARGYFPFIGWI-DKL-TGMLQRPQNNFQEIDRVYQELIDKHLDPNRAKIEQLQ 197 (208)
Q Consensus 138 ---------~~~~~~~~---------~~~~~~p~l~~l-~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 197 (208)
..++.+.+ .....+|+++.+ ..+ .+..+++.++.+.+++++.++|+++++... ...
T Consensus 202 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~r~~~~~---~~~- 277 (502)
T PLN02426 202 PGCLELSLPISEFADAFDTASKLSAERAMAASPLLWKIKRLLNIGSERKLKEAIKLVDELAAEVIRQRRKLGF---SAS- 277 (502)
T ss_pred CcccCCCCCccHHHHHHHHHHHHHHHHHhcchhHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHhccc---CCc-
Confidence 01122222 011122433322 111 133567788888999999999998876522 123
Q ss_pred cccHHHhhhc
Q 040924 198 QEDVIDVLLQ 207 (208)
Q Consensus 198 ~~d~l~~ll~ 207 (208)
.|+|+.+++
T Consensus 278 -~dll~~ll~ 286 (502)
T PLN02426 278 -KDLLSRFMA 286 (502)
T ss_pred -chHHHHHHh
Confidence 789998875
No 31
>KOG0684 consensus Cytochrome P450 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.39 E-value=6.5e-12 Score=97.25 Aligned_cols=185 Identities=16% Similarity=0.178 Sum_probs=130.5
Q ss_pred CCCCCCCC-CccccccccCCCCCchHHHHHHHHhhCCeEEEEcCCcCEEEecCHHHHHHHHHHcCccCCCCCChHHHHHh
Q 040924 9 KLPPGPWG-LPFIGTLHQLDVSKPHVLFWELSKKYGPLMSLRLGFSPSLVVSSAKMAKEILKTHDLQFCSRPALVAQQKL 87 (208)
Q Consensus 9 ~~~pgp~~-~p~~g~~~~~~~~~~~~~~~~~~~~yG~v~~~~~~~~~~v~i~dp~~~~~i~~~~~~~~~~~~~~~~~~~~ 87 (208)
..||--.+ .|++|....+ ..++.+.+.+..+|||+||++.++|..+-++.+|+....++..+..... ....+..+
T Consensus 31 ~~PPli~gwiP~lG~a~~f-gk~P~eFl~~~~~K~GdVFTv~l~Gk~~Tfll~p~~~~~v~~~~~~~ld---~~~~~~~l 106 (486)
T KOG0684|consen 31 KEPPLIKGWIPWLGSALAF-GKDPLEFLRECRKKYGDVFTVLLMGKYMTFLLGPEGYDFVFKAKLADLD---FEEAYSKL 106 (486)
T ss_pred CCCcccccCcchhhHHHHh-ccCHHHHHHHHHHhcCCeEEEEEcCcEEEEEeCchhhHHHHcCcccccC---HHHHHHHh
Confidence 46676665 5899999998 8999999999999999999999999999999999999999965532221 11222222
Q ss_pred --hcCCcceeeCCCChHHHHHHHHHHHHhhccccccccccHHHH---HHHHH-hc--C----------------------
Q 040924 88 --SYNGLDLAFSPYDEYWREIRKICAIHLFNSNRGQNFRPIEKM---NLIHQ-QA--S---------------------- 137 (208)
Q Consensus 88 --~~~~~~l~~~~~g~~w~~~Rk~l~~~~f~~~~l~~~~~~~~~---~~l~~-~~--~---------------------- 137 (208)
...|.|++..-.+....++.+++. .++...+++++.+.|.+ +.++. +. +
T Consensus 107 ~~~vFg~~v~~d~~~~~~~e~~~~~k-~~L~~~~lk~~~e~m~~el~~~f~~~~~~s~~~d~l~~~~~~ii~tAs~~ll~ 185 (486)
T KOG0684|consen 107 TTPVFGKGVVYDVPNHVMMEQKKFFK-SALGGVALKSLVELMLEELHAYFETSLGESGETDGLYTFCRLIIFTASRLLLG 185 (486)
T ss_pred hhhhcCCCccccCCCchHHHHHHHHH-HHhchhhHHHHHHHHHHHHHHHHhcccccccchhHhhhhhHHHhhhhHHHhhh
Confidence 234667776555788899999998 89999999999888776 44544 11 1
Q ss_pred -------hhHHHHHh--------hhccccccccccccccchhhhhhhhHHHHHHHHHHHHHHhhcccccchhccccccHH
Q 040924 138 -------RPLFVELV--------LARGYFPFIGWIDKLTGMLQRPQNNFQEIDRVYQELIDKHLDPNRAKIEQLQQEDVI 202 (208)
Q Consensus 138 -------~~~~~~~~--------~~~~~~p~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~l 202 (208)
++++...+ ..-..||. ++|. +..++..++.+.+.+++...|.++++..+. . . .|++
T Consensus 186 ~e~r~~~d~~~a~l~~dLd~~F~~~d~~FP~--~LP~--~~~r~~~ra~~~i~k~f~~~i~~rr~s~s~--~-~--~dml 256 (486)
T KOG0684|consen 186 GEVRDQLDADVAKLYHDLDQGFQPFDFLFPY--NLPI--PLLRRRDRARKKISKIFSKIILDRRASISK--W-D--NDML 256 (486)
T ss_pred hhhhhhhcchHHHHHHHHhccccchHhhccc--CCCc--chhhhHHHHHHHHHHHHHHHHHHHHhcccc--c-c--HHHH
Confidence 11222222 22223443 3332 456677799999999999999999887652 1 2 5666
Q ss_pred Hhhhc
Q 040924 203 DVLLQ 207 (208)
Q Consensus 203 ~~ll~ 207 (208)
+.+++
T Consensus 257 q~l~~ 261 (486)
T KOG0684|consen 257 QSLME 261 (486)
T ss_pred HHHHH
Confidence 66653
No 32
>COG2124 CypX Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.95 E-value=1.1e-08 Score=81.56 Aligned_cols=166 Identities=20% Similarity=0.208 Sum_probs=100.9
Q ss_pred chHHHHHHHHhhCCeEEEEcCCcC--EEEecCHHHHHHHHHHcCccCCCCCChHHHH--HhhcCCcc-eeeCCCChHHHH
Q 040924 31 PHVLFWELSKKYGPLMSLRLGFSP--SLVVSSAKMAKEILKTHDLQFCSRPALVAQQ--KLSYNGLD-LAFSPYDEYWRE 105 (208)
Q Consensus 31 ~~~~~~~~~~~yG~v~~~~~~~~~--~v~i~dp~~~~~i~~~~~~~~~~~~~~~~~~--~~~~~~~~-l~~~~~g~~w~~ 105 (208)
.......+.+.||.++..+..++. .+++++++.+++++++.. .+.+........ .....|.+ +++.+ |+.|++
T Consensus 24 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~s~~~~v~~v~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ll~~d-g~~H~r 101 (411)
T COG2124 24 PRFFLERAEDPYGDYFTLRLPGPGDGFWVVSRPADVREVLRDPR-FFSSALGAGLRPRLLRPVLGDGSLLTLD-GPEHTR 101 (411)
T ss_pred hhhhHHHHhCCCchhhhhhccCccceEEEEcCHHHHHHHHcCcc-cccccccccccccchhhhccccceeecC-CHHHHH
Confidence 344555677778888888766654 899999999999997652 122111111110 11122444 78887 999999
Q ss_pred HHHHHHHHhhccccccccccHHHH---HHHHHhc--Ch---hHH---------HHHh-----hhcccccccc-------c
Q 040924 106 IRKICAIHLFNSNRGQNFRPIEKM---NLIHQQA--SR---PLF---------VELV-----LARGYFPFIG-------W 156 (208)
Q Consensus 106 ~Rk~l~~~~f~~~~l~~~~~~~~~---~~l~~~~--~~---~~~---------~~~~-----~~~~~~p~l~-------~ 156 (208)
+||+++ ++|+++.++.|.+.+.+ +.+.+.. .. .++ ..++ .......|.. .
T Consensus 102 ~Rkl~~-~~F~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~v~~~a~~l~~~vi~~l~Gv~~~~~~~~~~~~~~~~~~~~~ 180 (411)
T COG2124 102 LRKLLA-PAFTPRALRGYRPLIREIADRLLDDLWQGGADLVLDFAAELTLRVIAELLGVPLEDRPQLLRWSDALLLRLDP 180 (411)
T ss_pred HHHHhc-cccCHHHHHHHHHHHHHHHHHHHHhcccCCchhHHHHhhhhhHHHHHHHhCCCHHHHHHHHHHHHHHHhccCc
Confidence 999999 99999999999999888 3455431 10 000 0011 0000000000 0
Q ss_pred cccccchhhhhhhhHHHHHHHHHHHHHHhhcccccchhccccccHHHhhhc
Q 040924 157 IDKLTGMLQRPQNNFQEIDRVYQELIDKHLDPNRAKIEQLQQEDVIDVLLQ 207 (208)
Q Consensus 157 l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~l~~ll~ 207 (208)
.........+..++...+.+++..+|++++... . .|+++.|+.
T Consensus 181 ~~~~~~~~~~~~~a~~~~~~~~~~li~~rR~~~------~--~dlls~l~~ 223 (411)
T COG2124 181 DLGPEEPWRRARAARRELDAYLRALIAERRAAP------R--DDLLSLLLS 223 (411)
T ss_pred ccCCcccHHHHHHHHHHHHHHHHHHHHHhccCC------c--ccHHHHHHH
Confidence 000012356678899999999999999999431 2 566666653
No 33
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=84.45 E-value=7.3 Score=24.80 Aligned_cols=61 Identities=23% Similarity=0.336 Sum_probs=40.3
Q ss_pred CCCCCCCCCccccccccCCCCCchHHHHHHHHhhCCeEEEEcCCc------CEEEecCHHHHHHHHHHcC
Q 040924 9 KLPPGPWGLPFIGTLHQLDVSKPHVLFWELSKKYGPLMSLRLGFS------PSLVVSSAKMAKEILKTHD 72 (208)
Q Consensus 9 ~~~pgp~~~p~~g~~~~~~~~~~~~~~~~~~~~yG~v~~~~~~~~------~~v~i~dp~~~~~i~~~~~ 72 (208)
++||--...-.+.|++ ..=..+.+.+++-+||+|..+++|.. -.||-.|...++.....-+
T Consensus 12 rlppevnriLyirNLp---~~ITseemydlFGkyg~IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dhls 78 (124)
T KOG0114|consen 12 RLPPEVNRILYIRNLP---FKITSEEMYDLFGKYGTIRQIRIGNTKETRGTAFVVYEDIFDAKKACDHLS 78 (124)
T ss_pred CCChhhheeEEEecCC---ccccHHHHHHHhhcccceEEEEecCccCcCceEEEEehHhhhHHHHHHHhc
Confidence 3343333334444443 23345677899999999999998754 4677788888888886533
No 34
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=63.08 E-value=22 Score=19.15 Aligned_cols=36 Identities=14% Similarity=0.287 Sum_probs=25.3
Q ss_pred HHHHHHhhCCeEEEEcCCc----CEEEecCHHHHHHHHHH
Q 040924 35 FWELSKKYGPLMSLRLGFS----PSLVVSSAKMAKEILKT 70 (208)
Q Consensus 35 ~~~~~~~yG~v~~~~~~~~----~~v~i~dp~~~~~i~~~ 70 (208)
+.++..+||+|-.+.+... -.|-..+++.++.....
T Consensus 1 L~~~f~~fG~V~~i~~~~~~~~~a~V~f~~~~~A~~a~~~ 40 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKKRGFAFVEFASVEDAQKAIEQ 40 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTSTTEEEEEESSHHHHHHHHHH
T ss_pred ChHHhCCcccEEEEEEEeCCCCEEEEEECCHHHHHHHHHH
Confidence 3577889999988875442 35666799998888753
No 35
>PF13625 Helicase_C_3: Helicase conserved C-terminal domain
Probab=53.90 E-value=31 Score=22.76 Aligned_cols=40 Identities=13% Similarity=0.160 Sum_probs=30.6
Q ss_pred CCchHHHHHHHHhhCCeEEEEcCCcCEEEecCHHHHHHHHHH
Q 040924 29 SKPHVLFWELSKKYGPLMSLRLGFSPSLVVSSAKMAKEILKT 70 (208)
Q Consensus 29 ~~~~~~~~~~~~~yG~v~~~~~~~~~~v~i~dp~~~~~i~~~ 70 (208)
.+....+.+|.++||.+--. .+...+.+.|++.++++...
T Consensus 74 ~~v~~~i~~w~~~~g~v~l~--~~~~~l~~~d~~~l~~l~~~ 113 (129)
T PF13625_consen 74 QNVEQSIEDWARRYGRVRLY--KGAYLLECDDPELLDELLAD 113 (129)
T ss_pred HHHHHHHHHHHHhcCCEEEe--cCeEEEEECCHHHHHHHHhC
Confidence 34567889999999986442 13567889999999999854
No 36
>PLN03120 nucleic acid binding protein; Provisional
Probab=49.08 E-value=97 Score=23.47 Aligned_cols=51 Identities=8% Similarity=-0.008 Sum_probs=38.6
Q ss_pred CCchHHHHHHHHhhCCeEEEEcC------CcCEEEecCHHHHHHHHHHcCccCCCCC
Q 040924 29 SKPHVLFWELSKKYGPLMSLRLG------FSPSLVVSSAKMAKEILKTHDLQFCSRP 79 (208)
Q Consensus 29 ~~~~~~~~~~~~~yG~v~~~~~~------~~~~v~i~dp~~~~~i~~~~~~~~~~~~ 79 (208)
.--...+.+++..||.|..+.+. +.-+|...|++.++..+..++..+.++.
T Consensus 15 ~tTE~dLrefFS~~G~I~~V~I~~d~~~~GfAFVtF~d~eaAe~AllLnG~~l~gr~ 71 (260)
T PLN03120 15 KATERDIKEFFSFSGDIEYVEMQSENERSQIAYVTFKDPQGAETALLLSGATIVDQS 71 (260)
T ss_pred CCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEeCcHHHHHHHHHhcCCeeCCce
Confidence 34567788999999999888763 3457888899999999976666665543
No 37
>COG1707 ACT domain-containing protein [General function prediction only]
Probab=48.30 E-value=25 Score=24.53 Aligned_cols=40 Identities=30% Similarity=0.264 Sum_probs=30.5
Q ss_pred CCCchHHHHHHHHhhC-CeEEEEcCCc----CEEEecCHHHHHHH
Q 040924 28 VSKPHVLFWELSKKYG-PLMSLRLGFS----PSLVVSSAKMAKEI 67 (208)
Q Consensus 28 ~~~~~~~~~~~~~~yG-~v~~~~~~~~----~~v~i~dp~~~~~i 67 (208)
.+...+...++.+++| |+..+++++. --++++||-.+--.
T Consensus 153 GGkIteaVk~lr~~hgI~VISL~M~GSVpdVADlVvtDPvqAGvl 197 (218)
T COG1707 153 GGKITEAVKELREEHGIPVISLNMFGSVPDVADLVVTDPVQAGVL 197 (218)
T ss_pred cchHHHHHHHHHHhcCCeEEEeccCCCCcchhheeecCchHhhhh
Confidence 4677889999999999 8999988774 24778888655433
No 38
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=45.88 E-value=83 Score=21.27 Aligned_cols=41 Identities=5% Similarity=0.020 Sum_probs=31.7
Q ss_pred CchHHHHHHHHhhCCeEEEEcC---------CcCEEEecCHHHHHHHHHH
Q 040924 30 KPHVLFWELSKKYGPLMSLRLG---------FSPSLVVSSAKMAKEILKT 70 (208)
Q Consensus 30 ~~~~~~~~~~~~yG~v~~~~~~---------~~~~v~i~dp~~~~~i~~~ 70 (208)
-....+.+++++||+|..+.+. +.-+|-..+++.++.++..
T Consensus 46 ~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~ 95 (144)
T PLN03134 46 TDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISE 95 (144)
T ss_pred CCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHH
Confidence 3467889999999998777542 2346778899999999964
No 39
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=42.43 E-value=54 Score=23.19 Aligned_cols=39 Identities=18% Similarity=0.176 Sum_probs=28.3
Q ss_pred chHHHHHHHHhhCCeEEEEc----CCcCEEEecCHHHHHHHHH
Q 040924 31 PHVLFWELSKKYGPLMSLRL----GFSPSLVVSSAKMAKEILK 69 (208)
Q Consensus 31 ~~~~~~~~~~~yG~v~~~~~----~~~~~v~i~dp~~~~~i~~ 69 (208)
--..+...+.+||++..+|+ ++.-+|-..||..+.+...
T Consensus 23 ~k~eLE~~F~~yG~lrsvWvArnPPGfAFVEFed~RDA~DAvr 65 (195)
T KOG0107|consen 23 TKRELERAFSKYGPLRSVWVARNPPGFAFVEFEDPRDAEDAVR 65 (195)
T ss_pred chHHHHHHHHhcCcceeEEEeecCCCceEEeccCcccHHHHHh
Confidence 34567888889999999986 3345677777777776653
No 40
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=38.12 E-value=1.1e+02 Score=23.88 Aligned_cols=41 Identities=10% Similarity=0.253 Sum_probs=31.4
Q ss_pred CchHHHHHHHHhhCCeEEEEcCCc---------CEEEecCHHHHHHHHHH
Q 040924 30 KPHVLFWELSKKYGPLMSLRLGFS---------PSLVVSSAKMAKEILKT 70 (208)
Q Consensus 30 ~~~~~~~~~~~~yG~v~~~~~~~~---------~~v~i~dp~~~~~i~~~ 70 (208)
--...+.+++..||+|..+.+... -+|...+++.+...+..
T Consensus 281 ~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~ 330 (352)
T TIGR01661 281 TDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILS 330 (352)
T ss_pred CCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHH
Confidence 345778899999999988876432 27888899988888754
No 41
>PHA01327 hypothetical protein
Probab=37.82 E-value=17 Score=18.64 Aligned_cols=19 Identities=16% Similarity=0.240 Sum_probs=14.7
Q ss_pred cceeeCCCChHHHHHHHHHH
Q 040924 92 LDLAFSPYDEYWREIRKICA 111 (208)
Q Consensus 92 ~~l~~~~~g~~w~~~Rk~l~ 111 (208)
++++... |++|...|..+.
T Consensus 12 ~~vineh-ge~wqer~drmk 30 (49)
T PHA01327 12 NNVINEH-GEEWQERKDRMK 30 (49)
T ss_pred chHHHhh-HHHHHHHHHHHH
Confidence 5666666 999999887765
No 42
>cd01646 RT_Bac_retron_I RT_Bac_retron_I: Reverse transcriptases (RTs) in bacterial retrotransposons or retrons. The polymerase reaction of this enzyme leads to the production of a unique RNA-DNA complex called msDNA (multicopy single-stranded (ss)DNA) in which a small ssDNA branches out from a small ssRNA molecule via a 2'-5'phosphodiester linkage. Bacterial retron RTs produce cDNA corresponding to only a small portion of the retron genome.
Probab=33.08 E-value=84 Score=21.41 Aligned_cols=55 Identities=22% Similarity=0.158 Sum_probs=32.5
Q ss_pred CCCCCCCCCCccccccccCCCCCchHHHHHHHHh-hCCeEEEEcCCcCEEEecCHHHHHHHHH
Q 040924 8 TKLPPGPWGLPFIGTLHQLDVSKPHVLFWELSKK-YGPLMSLRLGFSPSLVVSSAKMAKEILK 69 (208)
Q Consensus 8 ~~~~pgp~~~p~~g~~~~~~~~~~~~~~~~~~~~-yG~v~~~~~~~~~~v~i~dp~~~~~i~~ 69 (208)
..+|.|+...|+++|+.-. .+.....+ .+.+..++..-.-++++++.+.+++++.
T Consensus 52 ~GlpqG~~lS~~L~~~~l~-------~~d~~i~~~~~~~~~~RY~DD~~i~~~~~~~~~~~~~ 107 (158)
T cd01646 52 NGLPIGPLTSRFLANIYLN-------DVDHELKSKLKGVDYVRYVDDIRIFADSKEEAEEILE 107 (158)
T ss_pred ceEccCcchHHHHHHHHHH-------HHHHHHHhccCCceEEEecCcEEEEcCCHHHHHHHHH
Confidence 4567788777888886422 23333333 4555555555555566677777666653
No 43
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=32.46 E-value=86 Score=24.19 Aligned_cols=48 Identities=17% Similarity=0.295 Sum_probs=35.6
Q ss_pred cccccccCCCCCchHHHHHHHHhhCCeEEEEc-CCcCEEEecCHHHHHHHHH
Q 040924 19 FIGTLHQLDVSKPHVLFWELSKKYGPLMSLRL-GFSPSLVVSSAKMAKEILK 69 (208)
Q Consensus 19 ~~g~~~~~~~~~~~~~~~~~~~~yG~v~~~~~-~~~~~v~i~dp~~~~~i~~ 69 (208)
++||+. ...-+..++.+++.||.|.-+.+ =+--+|.|-|-.....+.+
T Consensus 6 FIGNLp---~~~~~~elr~lFe~ygkVlECDIvKNYgFVHiEdktaaedair 54 (346)
T KOG0109|consen 6 FIGNLP---REATEQELRSLFEQYGKVLECDIVKNYGFVHIEDKTAAEDAIR 54 (346)
T ss_pred hccCCC---cccchHHHHHHHHhhCceEeeeeecccceEEeecccccHHHHh
Confidence 567765 34567888999999998877653 3456788888887777775
No 44
>COG5329 Phosphoinositide polyphosphatase (Sac family) [Signal transduction mechanisms]
Probab=31.42 E-value=45 Score=28.22 Aligned_cols=39 Identities=18% Similarity=0.165 Sum_probs=26.4
Q ss_pred CchHHHHHHHHhhCCeEEEEcCCcCEEEecCHHHHHHHH
Q 040924 30 KPHVLFWELSKKYGPLMSLRLGFSPSLVVSSAKMAKEIL 68 (208)
Q Consensus 30 ~~~~~~~~~~~~yG~v~~~~~~~~~~v~i~dp~~~~~i~ 68 (208)
....++.++.++||+|+.+++.+..---..=.+..++.+
T Consensus 294 af~kHF~~L~~~YG~v~vvNLl~tK~~E~~L~~~ye~~l 332 (570)
T COG5329 294 AFDKHFDKLREKYGDVYVVNLLKTKGYEAPLLELYEKHL 332 (570)
T ss_pred HHHHHHHHHHHHcCCEEEEEcccCCcchhHHHHHHHHHH
Confidence 346799999999999999987665443333334444444
No 45
>smart00360 RRM RNA recognition motif.
Probab=29.87 E-value=97 Score=16.57 Aligned_cols=40 Identities=25% Similarity=0.231 Sum_probs=28.2
Q ss_pred chHHHHHHHHhhCCeEEEEcCC---------cCEEEecCHHHHHHHHHH
Q 040924 31 PHVLFWELSKKYGPLMSLRLGF---------SPSLVVSSAKMAKEILKT 70 (208)
Q Consensus 31 ~~~~~~~~~~~yG~v~~~~~~~---------~~~v~i~dp~~~~~i~~~ 70 (208)
....+.++.+.||++..+.+.. .-.|...+++.+..++..
T Consensus 9 ~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~ 57 (71)
T smart00360 9 TEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEA 57 (71)
T ss_pred CHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHH
Confidence 3466778888999887765432 224667889988888754
No 46
>smart00362 RRM_2 RNA recognition motif.
Probab=29.39 E-value=1e+02 Score=16.60 Aligned_cols=40 Identities=20% Similarity=0.250 Sum_probs=28.3
Q ss_pred chHHHHHHHHhhCCeEEEEcCC-------cCEEEecCHHHHHHHHHH
Q 040924 31 PHVLFWELSKKYGPLMSLRLGF-------SPSLVVSSAKMAKEILKT 70 (208)
Q Consensus 31 ~~~~~~~~~~~yG~v~~~~~~~-------~~~v~i~dp~~~~~i~~~ 70 (208)
....+.++.+.||++..+.+.. .-.|...+++.++.++..
T Consensus 12 ~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~ 58 (72)
T smart00362 12 TEEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEA 58 (72)
T ss_pred CHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHH
Confidence 4567788888999877665432 235667899999888754
No 47
>PF07659 DUF1599: Domain of Unknown Function (DUF1599); InterPro: IPR011630 This entry is represented by Clostridium phage phiCTP1, Gp74. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=29.14 E-value=23 Score=20.16 Aligned_cols=11 Identities=36% Similarity=0.936 Sum_probs=8.1
Q ss_pred CCCChHHHHHH
Q 040924 97 SPYDEYWREIR 107 (208)
Q Consensus 97 ~~~g~~w~~~R 107 (208)
.|+|+.|+..|
T Consensus 3 ~DYG~awr~~r 13 (61)
T PF07659_consen 3 HDYGDAWRIMR 13 (61)
T ss_pred ccHHHHHHHHC
Confidence 45788888766
No 48
>PF12385 Peptidase_C70: Papain-like cysteine protease AvrRpt2; InterPro: IPR022118 This is a family of cysteine proteases, found in actinobacteria, protobacteria and firmicutes. Papain-like cysteine proteases play a crucial role in plant-pathogen/pest interactions. On entering the host they act on non-self substrates, thereby manipulating the host to evade proteolysis []. AvrRpt2 from Pseudomonas syringae pv tomato DC3000 triggers resistance to P. syringae-2-dependent defence responses, including hypersensitive cell death, by cleaving the Arabidopsis RIN4 protein which is monitored by the cognate resistance protein RPS2 [].
Probab=28.09 E-value=1e+02 Score=21.47 Aligned_cols=17 Identities=29% Similarity=0.409 Sum_probs=13.6
Q ss_pred hHHHHHHHHhhCCeEEE
Q 040924 32 HVLFWELSKKYGPLMSL 48 (208)
Q Consensus 32 ~~~~~~~~~~yG~v~~~ 48 (208)
.+.+..+.++|||+.--
T Consensus 98 ~e~~~~LL~~yGPLwv~ 114 (166)
T PF12385_consen 98 AEGLANLLREYGPLWVA 114 (166)
T ss_pred HHHHHHHHHHcCCeEEE
Confidence 47889999999996543
No 49
>PF09926 DUF2158: Uncharacterized small protein (DUF2158); InterPro: IPR019226 This entry represents a family of predominantly prokaryotic proteins with no known function.
Probab=22.93 E-value=1.1e+02 Score=16.85 Aligned_cols=17 Identities=24% Similarity=0.296 Sum_probs=13.8
Q ss_pred hCCeEEEEcCCcCEEEe
Q 040924 42 YGPLMSLRLGFSPSLVV 58 (208)
Q Consensus 42 yG~v~~~~~~~~~~v~i 58 (208)
-|+++++..||+...|.
T Consensus 3 ~GDvV~LKSGGp~MTV~ 19 (53)
T PF09926_consen 3 IGDVVQLKSGGPRMTVT 19 (53)
T ss_pred CCCEEEEccCCCCeEEE
Confidence 38899999999877665
No 50
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=22.43 E-value=2.2e+02 Score=18.04 Aligned_cols=46 Identities=9% Similarity=0.072 Sum_probs=31.9
Q ss_pred CchHHHHHHHHhhCCeEEEE--------------cCCcCEEEe--cCHHHHHHHHHHcCccC
Q 040924 30 KPHVLFWELSKKYGPLMSLR--------------LGFSPSLVV--SSAKMAKEILKTHDLQF 75 (208)
Q Consensus 30 ~~~~~~~~~~~~yG~v~~~~--------------~~~~~~v~i--~dp~~~~~i~~~~~~~~ 75 (208)
.....+.+.+++||.|.... ..+.++|.| .++..+...|..++..+
T Consensus 17 ~~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~NG~i~ 78 (100)
T PF05172_consen 17 SASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQKNGTIF 78 (100)
T ss_dssp GGHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTTTTEEE
T ss_pred HHHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHhCCeEE
Confidence 34567778888999988764 345566666 58999999997776554
No 51
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=22.30 E-value=1.5e+02 Score=16.17 Aligned_cols=41 Identities=12% Similarity=0.148 Sum_probs=29.9
Q ss_pred CchHHHHHHHHhhCCeEEEEcCC--------cCEEEecCHHHHHHHHHH
Q 040924 30 KPHVLFWELSKKYGPLMSLRLGF--------SPSLVVSSAKMAKEILKT 70 (208)
Q Consensus 30 ~~~~~~~~~~~~yG~v~~~~~~~--------~~~v~i~dp~~~~~i~~~ 70 (208)
-....+.++...||++..+.+.. .-.|...+++.++.++..
T Consensus 10 ~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~ 58 (70)
T PF00076_consen 10 VTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEE 58 (70)
T ss_dssp SSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHH
Confidence 34577889999999986664322 135777899999999863
Done!