Query 040924
Match_columns 208
No_of_seqs 117 out of 1513
Neff 10.8
Searched_HMMs 29240
Date Mon Mar 25 21:25:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040924.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040924hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3swz_A Steroid 17-alpha-hydrox 99.9 1.5E-26 5.3E-31 186.2 18.1 197 4-207 3-250 (494)
2 3pm0_A Cypib1, cytochrome P450 99.9 5.7E-25 1.9E-29 177.5 15.5 199 3-207 3-258 (507)
3 3e6i_A CYPIIE1, P450-J, cytoch 99.9 4.2E-24 1.5E-28 171.1 15.1 193 4-207 5-250 (476)
4 3tbg_A Cytochrome P450 2D6; mo 99.9 1.8E-23 6.3E-28 167.5 15.6 117 5-122 6-124 (479)
5 3gw9_A Sterol 14alpha-demethyl 99.9 5.2E-24 1.8E-28 169.4 12.1 192 8-207 2-240 (450)
6 3czh_A Cytochrome P450 2R1; vi 99.9 1.9E-23 6.6E-28 167.8 15.4 196 4-207 7-256 (481)
7 2hi4_A Cytochrome P450 1A2; CY 99.9 3.1E-23 1.1E-27 167.1 16.6 195 3-206 8-264 (495)
8 2fdv_A Cytochrome P450 2A6; CY 99.9 2.8E-23 9.5E-28 166.6 15.8 192 6-207 7-251 (476)
9 3qz1_A Steroid 21-hydroxylase; 99.9 1.7E-23 5.8E-28 168.5 12.9 191 4-207 24-261 (496)
10 1po5_A Cytochrome P450 2B4; ox 99.9 3.8E-23 1.3E-27 165.8 14.6 192 5-206 6-250 (476)
11 3k9v_A 1,25-dihydroxyvitamin D 99.9 1.8E-22 6E-27 161.9 14.0 122 5-129 20-149 (482)
12 1r9o_A Cytochrome P450 2C9; mo 99.9 9.3E-23 3.2E-27 163.6 12.3 189 8-206 10-251 (477)
13 3ld6_A Lanosterol 14-alpha dem 99.9 8.2E-23 2.8E-27 163.3 11.4 188 9-207 11-239 (461)
14 3s79_A Cytochrome P450 19A1; o 99.9 1E-22 3.5E-27 164.2 11.5 199 4-207 40-284 (503)
15 3nxu_A Cytochrome P450 3A4; al 99.9 7.5E-23 2.6E-27 164.3 9.9 116 8-129 13-129 (485)
16 3i3k_A Lanosterol 14-alpha dem 99.9 9.2E-22 3.2E-26 157.1 10.8 188 6-207 8-239 (461)
17 2ij2_A Cytochrome P450 BM3; mo 99.8 2.5E-20 8.7E-25 149.3 15.3 118 8-129 2-121 (470)
18 2cib_A Cytochrome P450 51; hem 99.8 3E-20 1E-24 148.2 12.3 190 9-207 4-231 (455)
19 3n9y_A Cholesterol SIDE-chain 99.8 2.5E-20 8.5E-25 149.7 11.6 123 3-129 3-133 (487)
20 3dbg_A Putative cytochrome P45 99.8 1.1E-20 3.7E-25 151.2 8.9 185 8-207 22-250 (467)
21 2ve3_A Putative cytochrome P45 99.8 5.3E-20 1.8E-24 146.4 11.4 189 5-207 8-230 (444)
22 2cd8_A Cytochrome P450 monooxy 99.8 3.9E-19 1.3E-23 141.1 9.3 120 5-129 22-145 (436)
23 3v8d_A Cholesterol 7-alpha-mon 99.8 1.5E-19 5E-24 145.5 3.7 122 3-129 7-130 (491)
24 3mdm_A Cholesterol 24-hydroxyl 99.7 1.9E-17 6.5E-22 131.9 12.5 174 29-207 10-233 (456)
25 1izo_A P450bsbeta, cytochrome 99.7 4.6E-17 1.6E-21 128.5 10.5 181 17-207 8-219 (417)
26 3awm_A Fatty acid alpha-hydrox 99.7 1.1E-16 3.7E-21 126.3 9.9 184 11-207 4-218 (415)
27 1jfb_A Nitric-oxide reductase 99.7 6.7E-17 2.3E-21 127.0 8.7 113 10-129 2-120 (404)
28 1ued_A P450 OXYC, P450 monooxy 99.7 2.9E-16 9.8E-21 123.6 9.6 181 8-207 9-224 (406)
29 1cpt_A Cytochrome P450-TERP; o 99.6 1.9E-15 6.6E-20 119.6 11.9 115 6-129 3-135 (428)
30 2zbx_A Cytochrome P450-SU1; be 99.6 3.5E-15 1.2E-19 117.6 10.2 116 8-129 4-128 (412)
31 1n97_A CYP175A1; electron tran 99.6 1.6E-16 5.6E-21 124.3 2.0 110 12-129 2-112 (389)
32 3dax_A Cytochrome P450 7A1; ch 99.6 1.6E-16 5.6E-21 127.6 1.5 120 4-129 8-130 (491)
33 3lxh_A Cytochrome P450; heme, 99.6 2.5E-14 8.5E-19 113.0 13.6 165 29-207 38-233 (421)
34 3ivy_A Cytochrome P450 CYP125; 99.6 9.6E-15 3.3E-19 115.8 11.2 117 8-129 17-149 (433)
35 2zwu_A Camphor 5-monooxygenase 99.6 3.8E-14 1.3E-18 111.8 14.4 186 4-207 6-226 (415)
36 1s1f_A Putative cytochrome P45 99.6 6.1E-15 2.1E-19 116.0 9.0 113 8-129 7-126 (406)
37 3oo3_A OXY protein; cytochrome 99.6 1.5E-14 5.1E-19 112.9 11.1 167 28-207 11-205 (384)
38 3b6h_A Prostacyclin synthase; 99.6 1.4E-15 4.9E-20 122.4 4.5 118 4-129 13-132 (498)
39 3ejb_B Biotin biosynthesis cyt 99.6 1.1E-13 3.7E-18 108.7 14.7 166 29-206 13-211 (404)
40 4fb2_A P450CIN; heme, monooxyg 99.5 1.7E-14 5.9E-19 113.1 9.2 167 28-207 18-209 (398)
41 3b98_A Prostaglandin I2 syntha 99.5 1.5E-15 5E-20 121.6 2.5 117 4-129 13-131 (475)
42 3abb_A CYP105D6, cytochrome P4 99.5 2.9E-14 9.9E-19 112.2 9.0 97 28-129 23-127 (408)
43 3r9b_A Cytochrome P450 164A2; 99.5 2E-13 6.7E-18 107.7 13.7 162 28-207 28-233 (418)
44 3tkt_A Cytochrome P450; aromat 99.5 6.4E-14 2.2E-18 111.6 9.9 165 31-207 47-266 (450)
45 3aba_A Cytochrome P450; oxidor 99.5 1E-13 3.4E-18 109.0 10.3 167 28-207 18-214 (403)
46 3oft_A Cytochrome P450, CYP101 99.5 8.7E-14 3E-18 109.0 9.8 166 28-207 23-211 (396)
47 3a4g_A Vitamin D hydroxylase; 99.5 1.7E-13 5.9E-18 107.9 11.5 166 28-207 19-212 (411)
48 3tyw_A Putative cytochrome P45 99.5 1.2E-13 4.2E-18 108.9 10.5 167 28-207 28-226 (417)
49 2z36_A MOXA, cytochrome P450 t 99.5 2.1E-13 7.3E-18 107.4 11.1 184 5-207 3-222 (413)
50 2jjn_A Cytochrome P450 113A1; 99.5 3.3E-13 1.1E-17 106.3 11.4 175 6-207 16-218 (411)
51 2y5n_A MYCG, P-450-like protei 99.5 2.9E-13 1E-17 106.8 10.4 167 28-207 36-231 (417)
52 1z8o_A 6-deoxyerythronolide B 99.5 5.2E-13 1.8E-17 104.9 11.7 167 28-207 13-217 (404)
53 3dsk_A Cytochrome P450 74A, ch 99.4 8.9E-14 3.1E-18 111.8 6.2 120 5-129 24-161 (495)
54 3nc3_A Cytochrome P450 CYPX; c 99.4 2E-13 6.7E-18 108.5 7.9 164 29-207 53-246 (441)
55 1q5d_A P450 epoxidase; cytochr 99.4 4.8E-13 1.6E-17 105.6 10.0 163 28-207 25-231 (419)
56 2z3t_A Cytochrome P450; monoxy 99.4 1.1E-12 3.6E-17 103.9 11.5 96 29-129 20-131 (425)
57 2wm5_A CYP124, putative cytoch 99.4 6.4E-13 2.2E-17 105.4 10.3 97 29-129 44-150 (435)
58 1odo_A Putative cytochrome P45 99.4 2.4E-13 8.1E-18 107.0 7.2 97 28-129 14-120 (408)
59 2dkk_A Cytochrome P450; CYP158 99.4 6.1E-13 2.1E-17 104.8 8.9 167 28-207 26-223 (411)
60 2xkr_A CYP142, putative cytoch 99.4 1.4E-12 4.7E-17 102.3 10.8 162 28-207 17-207 (398)
61 3buj_A CALO2; heme, iron, meta 99.4 1.7E-12 5.9E-17 101.7 10.7 159 29-207 13-211 (397)
62 1gwi_A CYP154C1, cytochrome P4 99.4 1.4E-12 4.6E-17 102.8 10.0 167 28-207 16-219 (411)
63 2uuq_A CYP130, cytochrome P450 99.4 4.2E-12 1.5E-16 100.1 10.8 95 29-129 25-129 (414)
64 3dan_A Cytochrome P450 74A2; A 99.3 5.6E-13 1.9E-17 106.5 4.7 122 4-129 4-143 (473)
65 3mgx_A Putative P450 monooxyge 99.3 3.5E-12 1.2E-16 100.6 8.6 97 29-129 37-139 (415)
66 1lfk_A OXYB, P450 monooxygenas 99.3 2.2E-12 7.4E-17 101.2 6.9 160 36-207 20-215 (398)
67 3rwl_A Cytochrome P450 alkane 99.3 6.1E-11 2.1E-15 93.8 12.6 168 29-207 38-243 (426)
68 2xbk_A PIMD protein; epoxidati 99.2 1.7E-11 5.9E-16 96.3 6.4 96 28-129 25-130 (404)
69 3p3o_A Cytochrome P450; monoox 99.2 3.9E-11 1.3E-15 94.6 7.5 165 28-207 32-231 (416)
70 3b4x_A 367AA long hypothetical 99.2 3.1E-10 1.1E-14 88.0 11.0 156 32-207 2-192 (367)
71 2wiy_A XPLA-heme, cytochrome P 99.1 4.6E-10 1.6E-14 87.9 8.3 93 29-129 20-112 (394)
72 1io7_A Cytochrome P450 CYP119; 99.0 4.3E-10 1.5E-14 87.2 4.5 90 32-129 2-101 (368)
73 1n40_A P450 MT2, cytochrome P4 98.9 3.2E-10 1.1E-14 88.8 2.7 93 28-129 15-115 (396)
74 2rfb_A Cytochrome P450; heme, 98.9 5.4E-10 1.8E-14 85.8 3.7 78 40-129 2-80 (343)
75 4dxy_A Cytochrome P450, CYP101 98.9 3.7E-08 1.3E-12 77.6 13.2 104 29-136 37-144 (417)
76 4dnj_A Putative cytochrome P45 98.7 1.8E-08 6.2E-13 79.3 6.2 108 15-129 18-132 (412)
77 2yjn_B Erycii, DTDP-4-keto-6-d 95.5 0.0032 1.1E-07 48.9 0.7 98 10-129 35-143 (381)
78 1s79_A Lupus LA protein; RRM, 82.2 5.1 0.00017 24.3 5.9 54 19-75 15-76 (103)
79 3lqv_A PRE-mRNA branch site pr 76.2 11 0.00037 23.0 7.6 63 10-75 3-72 (115)
80 1iqt_A AUF1, heterogeneous nuc 73.4 8.3 0.00028 21.3 4.8 43 30-72 11-62 (75)
81 3d2w_A TAR DNA-binding protein 73.0 10 0.00036 22.1 5.3 48 17-67 13-64 (89)
82 2krb_A Eukaryotic translation 72.9 10 0.00036 21.4 6.1 51 19-70 5-66 (81)
83 2mss_A Protein (musashi1); RNA 70.0 12 0.0004 20.7 5.0 43 30-72 11-62 (75)
84 3ctr_A Poly(A)-specific ribonu 66.4 3.8 0.00013 24.9 2.2 49 31-79 18-69 (101)
85 1x4c_A Splicing factor, argini 64.5 21 0.0007 21.5 5.8 49 19-70 19-69 (108)
86 2diu_A KIAA0430 protein; struc 62.8 20 0.00068 21.6 4.9 60 19-79 13-75 (96)
87 3beg_B Splicing factor, argini 61.4 25 0.00086 21.5 6.8 56 19-77 20-78 (115)
88 4fxv_A ELAV-like protein 1; RN 61.4 21 0.00071 21.2 5.0 49 19-70 23-80 (99)
89 2a3j_A U1 small nuclear ribonu 59.2 26 0.00089 22.1 5.4 52 19-70 33-91 (127)
90 1whv_A Poly(A)-specific ribonu 57.0 17 0.00058 22.1 3.8 49 31-79 28-79 (100)
91 4f25_A Polyadenylate-binding p 57.0 29 0.00099 21.2 5.3 49 19-70 9-64 (115)
92 2nlw_A Eukaryotic translation 56.6 29 0.001 20.7 6.8 52 18-70 18-80 (105)
93 1whx_A Hypothetical protein ri 54.8 33 0.0011 20.8 6.1 57 19-78 14-74 (111)
94 1sjq_A Polypyrimidine tract-bi 54.6 34 0.0012 20.8 6.0 49 18-69 19-70 (105)
95 1wex_A Hypothetical protein (r 53.4 34 0.0012 20.6 5.5 49 18-69 18-69 (104)
96 2wbr_A GW182, gawky, LD47780P; 52.9 33 0.0011 20.3 5.2 50 17-69 9-61 (89)
97 2dgs_A DAZ-associated protein 52.6 33 0.0011 20.0 6.6 56 19-77 14-78 (99)
98 3s7r_A Heterogeneous nuclear r 52.3 20 0.0007 20.3 3.8 50 19-71 15-73 (87)
99 2dnh_A Bruno-like 5, RNA bindi 52.3 34 0.0012 20.2 5.0 49 19-70 19-75 (105)
100 3ex7_B RNA-binding protein 8A; 51.8 39 0.0013 20.8 6.2 56 19-77 26-91 (126)
101 1x4d_A Matrin 3; structural ge 50.8 39 0.0013 20.4 5.8 54 14-69 14-70 (102)
102 2dnr_A Synaptojanin-1; RRM dom 50.5 36 0.0012 20.3 4.5 44 30-73 27-71 (91)
103 3s8s_A Histone-lysine N-methyl 50.3 40 0.0014 20.4 5.2 49 19-70 10-67 (110)
104 2rs2_A Musashi-1, RNA-binding 50.2 39 0.0014 20.3 5.6 50 19-71 29-87 (109)
105 2cq4_A RNA binding motif prote 50.1 29 0.001 21.0 4.5 42 31-72 38-88 (114)
106 1oo0_B CG8781-PA, drosophila Y 49.5 40 0.0014 20.1 6.3 49 19-70 30-87 (110)
107 2cpf_A RNA binding motif prote 48.9 37 0.0013 19.7 5.2 49 19-70 9-69 (98)
108 2jvr_A Nucleolar protein 3; RN 48.4 45 0.0015 20.4 5.8 49 19-70 32-86 (111)
109 2cpz_A CUG triplet repeat RNA- 48.2 39 0.0013 20.4 4.9 49 19-70 29-86 (115)
110 2dgv_A HnRNP M, heterogeneous 47.8 37 0.0013 19.4 5.2 49 19-70 12-67 (92)
111 2hvz_A Splicing factor, argini 47.7 40 0.0014 19.7 5.5 41 30-70 12-56 (101)
112 2fy1_A RNA-binding motif prote 47.6 45 0.0016 20.3 5.1 55 19-76 11-74 (116)
113 2jwn_A Embryonic polyadenylate 47.6 32 0.0011 21.1 4.4 39 31-69 49-96 (124)
114 1sjr_A Polypyrimidine tract-bi 47.6 60 0.002 21.7 6.2 48 20-70 51-103 (164)
115 3ucg_A Polyadenylate-binding p 47.5 36 0.0012 19.2 4.4 42 31-72 19-69 (89)
116 2ad9_A Polypyrimidine tract-bi 47.4 49 0.0017 20.6 5.6 49 18-69 34-85 (119)
117 1rk8_A CG8781-PA, CG8781-PA pr 47.2 55 0.0019 21.4 5.8 49 19-70 76-133 (165)
118 2d9o_A DNAJ (HSP40) homolog, s 46.3 46 0.0016 19.9 5.6 40 31-70 30-73 (100)
119 1x5p_A Negative elongation fac 46.1 42 0.0014 19.5 4.7 40 31-70 26-68 (97)
120 2cph_A RNA binding motif prote 46.0 44 0.0015 19.7 7.5 49 19-70 19-77 (107)
121 1p27_B RNA-binding protein 8A; 46.0 44 0.0015 19.7 6.2 49 19-70 27-84 (106)
122 1wf0_A TDP-43, TAR DNA-binding 45.6 32 0.0011 19.6 3.9 46 19-67 9-58 (88)
123 3v4m_A Splicing factor U2AF 65 45.5 48 0.0016 19.9 5.5 47 32-78 29-87 (105)
124 2div_A TRNA selenocysteine ass 45.1 44 0.0015 19.4 4.9 49 19-70 13-71 (99)
125 2cqi_A Nucleolysin TIAR; RNA r 45.0 46 0.0016 19.5 5.8 48 19-69 19-73 (103)
126 2voo_A Lupus LA protein; RNA-b 44.8 34 0.0012 23.3 4.5 43 29-71 120-170 (193)
127 1x4e_A RNA binding motif, sing 44.2 41 0.0014 18.8 4.5 48 19-69 9-65 (85)
128 2cqb_A Peptidyl-prolyl CIS-tra 43.5 40 0.0014 19.8 4.2 50 18-70 15-73 (102)
129 2dgu_A Heterogeneous nuclear r 43.4 49 0.0017 19.5 6.3 49 19-70 15-64 (103)
130 2dgo_A Cytotoxic granule-assoc 43.3 53 0.0018 19.8 5.6 49 19-70 19-76 (115)
131 1x5s_A Cold-inducible RNA-bind 43.2 48 0.0017 19.3 6.6 49 19-70 16-73 (102)
132 3s6e_A RNA-binding protein 39; 43.1 51 0.0017 20.3 4.7 46 32-77 31-82 (114)
133 2cqc_A Arginine/serine-rich sp 43.0 46 0.0016 19.0 6.3 50 18-70 18-76 (95)
134 2x1f_A MRNA 3'-END-processing 42.9 48 0.0016 19.2 6.2 49 19-70 6-63 (96)
135 1whw_A Hypothetical protein ri 42.6 49 0.0017 19.2 6.5 49 19-70 12-69 (99)
136 3ulh_A THO complex subunit 4; 41.4 54 0.0018 19.4 5.2 49 19-70 33-89 (107)
137 1uaw_A Mouse-musashi-1; RNP-ty 41.4 35 0.0012 18.6 3.5 42 31-72 13-63 (77)
138 1p1t_A Cleavage stimulation fa 41.2 53 0.0018 19.2 5.0 49 19-70 12-69 (104)
139 2ywk_A Putative RNA-binding pr 41.0 50 0.0017 18.9 4.8 48 19-69 20-75 (95)
140 1u6f_A Tcubp1, RNA-binding pro 40.9 65 0.0022 20.1 5.3 40 31-70 55-103 (139)
141 1wg5_A Heterogeneous nuclear r 40.7 56 0.0019 19.3 5.3 56 19-77 19-83 (104)
142 2dnz_A Probable RNA-binding pr 40.3 52 0.0018 18.9 6.8 56 19-77 9-74 (95)
143 2dgt_A RNA-binding protein 30; 40.3 52 0.0018 18.8 5.7 49 19-70 14-63 (92)
144 2cq0_A Eukaryotic translation 40.2 35 0.0012 20.1 3.6 49 19-70 19-76 (103)
145 2err_A Ataxin-2-binding protei 39.8 41 0.0014 20.2 3.9 41 30-70 41-88 (109)
146 1x4g_A Nucleolysin TIAR; struc 39.6 59 0.002 19.3 6.3 49 19-70 29-80 (109)
147 3pgw_S U1-70K; protein-RNA com 39.1 64 0.0022 25.3 5.7 49 19-70 106-163 (437)
148 1h2v_Z 20 kDa nuclear CAP bind 39.1 76 0.0026 20.4 5.6 49 19-70 43-100 (156)
149 1x4b_A Heterogeneous nuclear r 39.1 35 0.0012 20.7 3.5 41 30-70 39-88 (116)
150 2pe8_A Splicing factor 45; RRM 38.9 55 0.0019 19.7 4.3 65 14-78 7-84 (105)
151 2dgx_A KIAA0430 protein; RRM d 38.4 58 0.002 18.9 6.4 52 19-70 13-71 (96)
152 3md1_A Nuclear and cytoplasmic 38.4 51 0.0017 18.2 4.9 40 31-70 14-62 (83)
153 3bs9_A Nucleolysin TIA-1 isofo 37.6 54 0.0019 18.3 5.6 49 19-70 10-67 (87)
154 2cqd_A RNA-binding region cont 37.6 67 0.0023 19.3 5.9 51 19-72 21-80 (116)
155 2dis_A Unnamed protein product 37.5 64 0.0022 19.1 6.0 49 19-70 12-71 (109)
156 2cpi_A CCR4-NOT transcription 37.3 26 0.00088 21.2 2.7 54 19-75 19-88 (111)
157 2jvo_A Nucleolar protein 3; nu 37.1 67 0.0023 19.2 5.3 40 31-70 44-84 (108)
158 2cq1_A PTB-like protein L; RRM 36.8 67 0.0023 19.1 5.3 49 18-69 18-69 (101)
159 1l3k_A Heterogeneous nuclear r 36.7 68 0.0023 21.2 5.0 51 19-72 17-76 (196)
160 3n9u_C Cleavage and polyadenyl 36.3 85 0.0029 20.4 5.3 40 31-70 68-118 (156)
161 1nu4_A U1A RNA binding domain; 36.2 62 0.0021 18.6 5.6 52 19-70 12-70 (97)
162 2dnq_A RNA-binding protein 4B; 35.8 61 0.0021 18.4 6.1 49 19-70 12-61 (90)
163 1x4f_A Matrin 3; structural ge 35.5 51 0.0017 20.3 3.8 50 18-69 28-80 (112)
164 3md3_A Nuclear and cytoplasmic 35.4 77 0.0026 20.1 5.0 39 31-69 13-59 (166)
165 1fxl_A Paraneoplastic encephal 35.4 86 0.0029 19.9 5.5 40 31-70 15-63 (167)
166 3ns6_A Eukaryotic translation 35.3 68 0.0023 18.8 5.5 52 19-70 10-73 (100)
167 2kvi_A Nuclear polyadenylated 35.2 66 0.0023 18.6 6.4 50 19-70 14-64 (96)
168 2do0_A HnRNP M, heterogeneous 35.1 72 0.0025 19.0 5.0 49 19-70 19-75 (114)
169 2kxn_B Transformer-2 protein h 34.6 84 0.0029 19.6 8.4 50 18-70 49-107 (129)
170 2cpj_A Non-POU domain-containi 34.4 43 0.0015 19.5 3.3 49 19-70 19-70 (99)
171 2do4_A Squamous cell carcinoma 34.3 70 0.0024 18.6 6.7 49 19-70 21-77 (100)
172 2khc_A Testis-specific RNP-typ 34.1 65 0.0022 19.4 4.2 40 31-70 53-101 (118)
173 2bz2_A Negative elongation fac 33.7 70 0.0024 19.7 4.3 40 31-70 50-92 (121)
174 2qfj_A FBP-interacting repress 33.2 1.1E+02 0.0038 20.5 7.2 41 30-70 40-89 (216)
175 2cq2_A Hypothetical protein LO 33.0 87 0.003 19.3 5.6 41 30-70 39-82 (114)
176 3p5t_L Cleavage and polyadenyl 33.0 70 0.0024 18.2 4.5 47 20-69 6-63 (90)
177 2la4_A Nuclear and cytoplasmic 32.5 75 0.0026 18.4 5.3 40 31-70 40-82 (101)
178 1x5t_A Splicing factor 3B subu 32.5 73 0.0025 18.2 4.4 48 19-69 9-66 (96)
179 3ue2_A Poly(U)-binding-splicin 31.6 86 0.0029 19.4 4.4 50 29-78 36-99 (118)
180 2cqg_A TDP-43, TAR DNA-binding 31.6 80 0.0027 18.4 5.2 48 19-69 19-75 (103)
181 1qm9_A Polypyrimidine tract-bi 31.0 1.2E+02 0.004 20.2 6.1 47 31-77 17-68 (198)
182 4a8x_A RNA-binding protein wit 30.7 74 0.0025 17.7 6.2 49 19-70 8-66 (88)
183 2jrs_A RNA-binding protein 39; 30.5 89 0.003 18.6 7.2 49 19-70 30-87 (108)
184 3r27_A HnRNP L, heterogeneous 29.7 94 0.0032 18.6 6.1 51 17-70 23-76 (100)
185 1b7f_A Protein (SXL-lethal pro 29.6 1.1E+02 0.0038 19.4 5.9 48 19-69 7-63 (168)
186 2dnm_A SRP46 splicing factor; 29.5 87 0.003 18.2 6.6 54 19-75 17-80 (103)
187 2lxi_A RNA-binding protein 10; 29.5 84 0.0029 18.0 4.1 42 29-70 12-63 (91)
188 2dhg_A TRNA selenocysteine ass 29.4 88 0.003 18.2 6.7 54 14-70 8-70 (104)
189 4f02_A Polyadenylate-binding p 29.2 1.1E+02 0.0037 20.8 5.1 49 19-70 19-76 (213)
190 3zzy_A Polypyrimidine tract-bi 29.0 88 0.003 19.9 4.2 48 20-70 33-85 (130)
191 2d9p_A Polyadenylate-binding p 28.9 90 0.0031 18.2 6.7 56 17-75 17-80 (103)
192 3tyt_A Heterogeneous nuclear r 28.5 1.3E+02 0.0045 20.5 5.4 49 19-69 8-60 (205)
193 2dh8_A DAZ-associated protein 28.5 93 0.0032 18.2 5.4 51 19-72 20-79 (105)
194 2j76_E EIF-4B, EIF4B, eukaryot 28.1 93 0.0032 18.1 4.8 43 32-75 33-85 (100)
195 1ufw_A Synaptojanin 2; RNP dom 28.1 94 0.0032 18.6 3.8 45 29-73 35-80 (95)
196 2cjk_A Nuclear polyadenylated 28.0 94 0.0032 19.8 4.5 41 31-71 100-149 (167)
197 2dit_A HIV TAT specific factor 28.0 79 0.0027 19.0 3.8 39 32-70 40-83 (112)
198 2cq3_A RNA-binding protein 9; 27.7 95 0.0033 18.1 6.8 49 19-70 19-74 (103)
199 1wi8_A EIF-4B, eukaryotic tran 27.3 98 0.0033 18.1 5.6 50 19-72 19-78 (104)
200 2xs2_A Deleted in azoospermia- 27.0 35 0.0012 20.1 1.9 48 19-69 13-68 (102)
201 2adc_A Polypyrimidine tract-bi 26.7 1.6E+02 0.0054 20.3 7.2 56 19-76 38-98 (229)
202 2ghp_A U4/U6 snRNA-associated 26.7 1E+02 0.0034 22.2 4.7 55 19-76 45-106 (292)
203 2ki2_A SS-DNA binding protein 26.5 86 0.003 17.6 3.7 39 31-70 14-61 (90)
204 2e5h_A Zinc finger CCHC-type a 26.1 96 0.0033 17.6 7.2 50 18-70 19-77 (94)
205 1x4h_A RNA-binding protein 28; 26.0 1.1E+02 0.0036 18.1 8.0 50 18-70 18-76 (111)
206 2kt5_A RNA and export factor-b 25.8 1.2E+02 0.004 18.5 6.2 40 30-69 47-94 (124)
207 2hgn_A Heterogeneous nuclear r 25.7 1.2E+02 0.004 19.4 4.4 56 19-78 50-113 (139)
208 2e5g_A U6 snRNA-specific termi 25.5 1E+02 0.0034 17.6 5.0 49 19-70 12-64 (94)
209 1x5o_A RNA binding motif, sing 25.5 97 0.0033 18.4 3.9 49 19-70 29-85 (114)
210 1jmt_A Splicing factor U2AF 35 25.4 1.1E+02 0.0038 18.1 5.2 44 33-76 41-94 (104)
211 3mdf_A Peptidyl-prolyl CIS-tra 25.3 93 0.0032 17.2 6.6 49 19-70 11-68 (85)
212 2la6_A RNA-binding protein FUS 24.2 1.1E+02 0.0038 17.6 6.8 49 19-70 17-82 (99)
213 2e5i_A Heterogeneous nuclear r 24.1 1.4E+02 0.0047 18.7 6.0 48 20-70 30-81 (124)
214 1x5u_A Splicing factor 3B subu 22.2 1.3E+02 0.0043 17.5 8.0 55 19-76 19-83 (105)
215 2xnq_A Nuclear polyadenylated 22.0 1.3E+02 0.0043 17.4 6.5 50 19-70 26-76 (97)
216 2dha_A FLJ20171 protein; RRM d 21.9 85 0.0029 19.5 3.1 51 19-72 27-89 (123)
217 2e44_A Insulin-like growth fac 21.5 1.2E+02 0.0042 17.2 7.2 49 18-69 18-72 (96)
218 2cpd_A Apobec-1 stimulating pr 21.4 1.3E+02 0.0044 17.3 6.1 48 19-69 19-69 (99)
219 2dnp_A RNA-binding protein 14; 21.1 1.2E+02 0.0042 17.0 7.3 50 18-70 12-62 (90)
220 3q2s_C Cleavage and polyadenyl 21.1 1.2E+02 0.0042 21.1 4.1 39 31-69 81-130 (229)
221 3nmr_A Cugbp ELAV-like family 20.9 1.6E+02 0.0056 18.7 4.6 41 30-70 107-155 (175)
222 2dhx_A Poly (ADP-ribose) polym 20.5 1.6E+02 0.0054 18.0 4.2 45 32-76 22-72 (104)
223 2i2y_A Fusion protein consists 20.4 1.7E+02 0.0059 18.4 8.2 49 19-70 77-129 (150)
No 1
>3swz_A Steroid 17-alpha-hydroxylase/17,20 lyase; cytochrome P450, CYP17A1, P450C17, P450 17A1, monooxyg 17A-hydroxylase, heme protein; HET: HEM TOK; 2.40A {Homo sapiens} PDB: 3ruk_A*
Probab=99.95 E-value=1.5e-26 Score=186.25 Aligned_cols=197 Identities=21% Similarity=0.425 Sum_probs=141.7
Q ss_pred CCCCCCCCCCCCCCccccccccCCC-CCchHHHHHHHHhhCCeEEEEcCCcCEEEecCHHHHHHHHHHcCccCCCCCChH
Q 040924 4 SRNNTKLPPGPWGLPFIGTLHQLDV-SKPHVLFWELSKKYGPLMSLRLGFSPSLVVSSAKMAKEILKTHDLQFCSRPALV 82 (208)
Q Consensus 4 ~~~~~~~~pgp~~~p~~g~~~~~~~-~~~~~~~~~~~~~yG~v~~~~~~~~~~v~i~dp~~~~~i~~~~~~~~~~~~~~~ 82 (208)
+++..+.||||+++|++||++.+.. +.++..+.+|+++||+|+++++|+.++|+|+||+++++||.+++..|.+++...
T Consensus 3 k~~~~~~PPgP~~lPliGnl~~l~~~~~~~~~~~~~~~kYG~i~~~~~g~~~~vvv~~p~~~k~il~~~~~~f~~rp~~~ 82 (494)
T 3swz_A 3 KKTGAKYPKSLLSLPLVGSLPFLPRHGHMHNNFFKLQKKYGPIYSVRMGTKTTVIVGHHQLAKEVLIKKGKDFSGRPQMA 82 (494)
T ss_dssp ---------CCBCCCEEEEESSCTTSSCHHHHHHHTHHHHCSEEEEEETTEEEEEECSHHHHHHHHTTTTTTTBBCCCCH
T ss_pred CCCCCCCCCCCCCCCeEcchHHhCCCCchhHHHHHHHHHcCCEEEEEeCCCCEEEECCHHHHHHHHHhCcHhhCCCCCcH
Confidence 4566788999999999999998843 467899999999999999999999999999999999999998888998888766
Q ss_pred HHHHhhcCCcceeeCCCChHHHHHHHHHHHHhhcc--ccccccccHHHH------HHHHHhcC-----------------
Q 040924 83 AQQKLSYNGLDLAFSPYDEYWREIRKICAIHLFNS--NRGQNFRPIEKM------NLIHQQAS----------------- 137 (208)
Q Consensus 83 ~~~~~~~~~~~l~~~~~g~~w~~~Rk~l~~~~f~~--~~l~~~~~~~~~------~~l~~~~~----------------- 137 (208)
....+...+.|++++++|+.|+++|++++ ++|+. ..+..+.+++.+ +.+.+..+
T Consensus 83 ~~~~~~~~~~gl~~~~~g~~wr~~Rr~~~-~~f~~~~~~~~~~~~~i~~~~~~l~~~l~~~~~~~vd~~~~~~~~t~dvi 161 (494)
T 3swz_A 83 TLDIASNNRKGIAFADSGAHWQLHRRLAM-ATFALFKDGDQKLEKIICQEISTLCDMLATHNGQSIDISFPVFVAVTNVI 161 (494)
T ss_dssp HHHHHTTTTCSSSSSCSSHHHHHHHHHHH-HHTTTTSSSTTCHHHHHHHHHHHHHHHHHHTTTEEECCHHHHHHHHHHHH
T ss_pred HHHHhccCCCCeEeCCCCHHHHHHHHHHH-HHHHHhcchHHHHHHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHH
Confidence 55555445678888877999999999999 99974 456677777776 23322211
Q ss_pred ------------hhHH---HHHh----------hhccccccccccccccchhhhhhhhHHHHHHHHHHHHHHhhcccccc
Q 040924 138 ------------RPLF---VELV----------LARGYFPFIGWIDKLTGMLQRPQNNFQEIDRVYQELIDKHLDPNRAK 192 (208)
Q Consensus 138 ------------~~~~---~~~~----------~~~~~~p~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 192 (208)
+..+ ..+. .+.+++|++.+++. ...+++..+...+.+++.++++++++..+.
T Consensus 162 ~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~p~--~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~- 238 (494)
T 3swz_A 162 SLICFNTSYKNGDPELNVIQNYNEGIIDNLSKDSLVDLVPWLKIFPN--KTLEKLKSHVKIRNDLLNKILENYKEKFRS- 238 (494)
T ss_dssp HHHHHSCCCCTTCTHHHHHHHHHHHHHHHHCSSSSCCSSCGGGTSCC--SHHHHHHHHHHHHHHHHHHHHHHHTTTCCT-
T ss_pred HHHHcCCcCCCCCHHHHHHHHHHHHHHHhcccchHHHHHHHHHHcCc--HHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-
Confidence 1111 1110 23456777776652 345667778888889999999888776543
Q ss_pred hhccccccHHHhhhc
Q 040924 193 IEQLQQEDVIDVLLQ 207 (208)
Q Consensus 193 ~~~~~~~d~l~~ll~ 207 (208)
... .|+++.|++
T Consensus 239 -~~~--~d~l~~ll~ 250 (494)
T 3swz_A 239 -DSI--TNMLDTLMQ 250 (494)
T ss_dssp -TCC--CSHHHHHHH
T ss_pred -cch--hHHHHHHHH
Confidence 334 789988874
No 2
>3pm0_A Cypib1, cytochrome P450 1B1; CYP1B1, monooxygenase, alpha-naphthoflavone, 17BETA-estradiol, oxidoreductase; HET: HEM BHF; 2.70A {Homo sapiens}
Probab=99.93 E-value=5.7e-25 Score=177.47 Aligned_cols=199 Identities=20% Similarity=0.416 Sum_probs=123.6
Q ss_pred CCCCCCCCCCCCCCCccccccccCCCCCchHHHHHHHHhhCCeEEEEcCCcCEEEecCHHHHHHHHHHcCccCCCCCChH
Q 040924 3 TSRNNTKLPPGPWGLPFIGTLHQLDVSKPHVLFWELSKKYGPLMSLRLGFSPSLVVSSAKMAKEILKTHDLQFCSRPALV 82 (208)
Q Consensus 3 ~~~~~~~~~pgp~~~p~~g~~~~~~~~~~~~~~~~~~~~yG~v~~~~~~~~~~v~i~dp~~~~~i~~~~~~~~~~~~~~~ 82 (208)
+++++.+.||||+++|++||++.+ ..+++..+.+++++||+||++++++.++|+|+||+++++||.+++..|.+++...
T Consensus 3 r~~~~~~~pPgP~~~P~iG~~~~~-~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvv~dp~~i~~il~~~~~~f~~r~~~~ 81 (507)
T 3pm0_A 3 KKTSSKGKPPGPFAWPLIGNAAAV-GQAAHLSFARLARRYGDVFQIRLGSCPIVVLNGERAIHQALVQQGSAFADRPSFA 81 (507)
T ss_dssp --------------------------CCHHHHHHHHHHHHCSEEEEEETTEEEEEECSHHHHHHHHTTTTTTSCBCCCCH
T ss_pred cccCCCCCCcCCCCCCeeCchhhc-CccHHHHHHHHHHHhCCEEEEEECCccEEEECCHHHHHHHHHhCcHhhCCCCcch
Confidence 345667889999999999999988 6788999999999999999999999999999999999999988778888787655
Q ss_pred HHHHhhcCCcceeeCCCChHHHHHHHHHHHHhhccccccc------cccHHHH------HHHHHhc--C-----------
Q 040924 83 AQQKLSYNGLDLAFSPYDEYWREIRKICAIHLFNSNRGQN------FRPIEKM------NLIHQQA--S----------- 137 (208)
Q Consensus 83 ~~~~~~~~~~~l~~~~~g~~w~~~Rk~l~~~~f~~~~l~~------~~~~~~~------~~l~~~~--~----------- 137 (208)
...... .+.|++++.+|+.|+++|++++ ++|+...... +.+.+.+ +.+.+.. +
T Consensus 82 ~~~~~~-~g~~l~~~~~g~~w~~~R~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~l~~~~~~~~~vd~~~~~~~ 159 (507)
T 3pm0_A 82 SFRVVS-GGRSMAFGHYSEHWKVQRRAAH-SMMRNFFTRQPRSRQVLEGHVLSEARELVALLVRGSADGAFLDPRPLTVV 159 (507)
T ss_dssp HHHHGG-GGTCSSSSCSSHHHHHHHHHHH-HHHHHSTTSSTTHHHHHHHHHHHHHHHHHHHHHHTTGGGCCBCCHHHHHH
T ss_pred HHHhhc-CCCceEECCCChHHHHHHHHHH-HHHHHhcCCccchHHHHHHHHHHHHHHHHHHHHhhcccCCCcChHHHHHH
Confidence 544333 4578877766999999999999 9887555443 6666665 3332211 1
Q ss_pred ------------------hhHHHHHh-------------hhcccccccccccc-ccchhhhhhhhHHHHHHHHHHHHHHh
Q 040924 138 ------------------RPLFVELV-------------LARGYFPFIGWIDK-LTGMLQRPQNNFQEIDRVYQELIDKH 185 (208)
Q Consensus 138 ------------------~~~~~~~~-------------~~~~~~p~l~~l~~-~~~~~~~~~~~~~~~~~~~~~~i~~~ 185 (208)
+.++..++ ...+++|++.+++. +.+..+++.++...+.+++.++|+++
T Consensus 160 ~~~dvi~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~lp~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 239 (507)
T 3pm0_A 160 AVANVMSAVCFGCRYSHDDPEFRELLSHNEEFGRTVGAGSLVDVMPWLQYFPNPVRTVFREFEQLNRNFSNFILDKFLRH 239 (507)
T ss_dssp HHHHHHHHHHTSCCCCTTCHHHHHHTSCHHHHHHHHSTTCCTTTCGGGGGSCSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccccCCCCCHHHHHHHHHHHHHHHhcccchHHHHhHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11222221 22345677666642 11245677788888999999999988
Q ss_pred hcccccchhccccccHHHhhhc
Q 040924 186 LDPNRAKIEQLQQEDVIDVLLQ 207 (208)
Q Consensus 186 ~~~~~~~~~~~~~~d~l~~ll~ 207 (208)
++..+.+ ... .|+++.|++
T Consensus 240 ~~~~~~~-~~~--~d~l~~ll~ 258 (507)
T 3pm0_A 240 CESLRPG-AAP--RDMMDAFIL 258 (507)
T ss_dssp HHHCCTT-CCC--CSHHHHHHH
T ss_pred Hhccccc-cCC--ccHHHHHHH
Confidence 7765431 223 788888873
No 3
>3e6i_A CYPIIE1, P450-J, cytochrome P450 2E1; CYP2E1, monooxygenase, acetaminophen, oxidoreductase, heme, endoplasmic reticulum, iron, membrane; HET: HEM; 2.20A {Homo sapiens} PDB: 3e4e_A* 3gph_A* 3koh_A* 3lc4_A* 3t3z_A*
Probab=99.92 E-value=4.2e-24 Score=171.12 Aligned_cols=193 Identities=24% Similarity=0.425 Sum_probs=134.2
Q ss_pred CCCCCCCCCCCCCCccccccccCCCCCchHHHHHHHHhhCCeEEEEcCCcCEEEecCHHHHHHHHHHcCccCCCCCChHH
Q 040924 4 SRNNTKLPPGPWGLPFIGTLHQLDVSKPHVLFWELSKKYGPLMSLRLGFSPSLVVSSAKMAKEILKTHDLQFCSRPALVA 83 (208)
Q Consensus 4 ~~~~~~~~pgp~~~p~~g~~~~~~~~~~~~~~~~~~~~yG~v~~~~~~~~~~v~i~dp~~~~~i~~~~~~~~~~~~~~~~ 83 (208)
.+++.+.||||+++|++||++.+...+++..+.+|+++||+|+++++++.+.|+++||+.+++||.++...|.+++....
T Consensus 5 ~~~~~~lpPgP~~~PliG~~~~~~~~~~~~~~~~~~~~yG~v~~~~~g~~~~vvv~~~~~v~~il~~~~~~f~~r~~~~~ 84 (476)
T 3e6i_A 5 TSSKGKLPPGPFPLPIIGNLFQLELKNIPKSFTRLAQRFGPVFTLYVGSQRMVVMHGYKAVKEALLDYKDEFSGRGDLPA 84 (476)
T ss_dssp -----CCCCCCCCBTTTBTGGGCCTTCHHHHHHHHHHHHCSEEEEEETTEEEEEECSHHHHHHHHHTSTTTTCEECCCGG
T ss_pred ccCCCCCCcCCCCcccccChhhhccccHhHHHHHHHHHhCCEEEEEECCccEEEECCHHHHHHHHhcchHhhCCCCCCch
Confidence 45667899999999999999998567889999999999999999999999999999999999999887778877765444
Q ss_pred HHHhhcCCcceeeCCCChHHHHHHHHHHHHhhccccc--cccccHHHH------HHHHHhcC------------------
Q 040924 84 QQKLSYNGLDLAFSPYDEYWREIRKICAIHLFNSNRG--QNFRPIEKM------NLIHQQAS------------------ 137 (208)
Q Consensus 84 ~~~~~~~~~~l~~~~~g~~w~~~Rk~l~~~~f~~~~l--~~~~~~~~~------~~l~~~~~------------------ 137 (208)
..... ++ |+++++ |+.|+++|+++. +.|+...+ ..+.+.+.+ +.+.+..+
T Consensus 85 ~~~~~-~~-~l~~~~-g~~w~~~Rr~~~-~~l~~~~~~~~~~~~~i~~~~~~l~~~l~~~~~~~~d~~~~~~~~~~dvi~ 160 (476)
T 3e6i_A 85 FHAHR-DR-GIIFNN-GPTWKDIRRFSL-TTLRNYGMGKQGNESRIQREAHFLLEALRKTQGQPFDPTFLIGCAPCNVIA 160 (476)
T ss_dssp GGGGT-TS-SSTTCC-STTHHHHHHHHH-HHHHHTC-CCSHHHHHHHHHHHHHHHHHHTTTTSCBCTHHHHTHHHHHHHH
T ss_pred hheec-CC-CEEecC-CcHHHHHHHHHH-HHHHhcCCCchHHHHHHHHHHHHHHHHHHHhCCCCcChHHHHHHHHHHHHH
Confidence 44333 23 899888 999999999988 88876544 234455554 22322111
Q ss_pred -----------hhHHHHHh---------------hhccccc-cccccccccchhhhhhhhHHHHHHHHHHHHHHhhcccc
Q 040924 138 -----------RPLFVELV---------------LARGYFP-FIGWIDKLTGMLQRPQNNFQEIDRVYQELIDKHLDPNR 190 (208)
Q Consensus 138 -----------~~~~~~~~---------------~~~~~~p-~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 190 (208)
+.++...+ ...+.+| ++.++ ++..++..++...+.+++.++|+++++..+
T Consensus 161 ~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l---p~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 237 (476)
T 3e6i_A 161 DILFRKHFDYNDEKFLRLMYLFNENFHLLSTPWLQLYNNFPSFLHYL---PGSHRKVIKNVAEVKEYVSERVKEHHQSLD 237 (476)
T ss_dssp HHHHSCCCCTTCHHHHHHHHHHHHHHHHTTSHHHHHHHHSHHHHTTS---CSHHHHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHcCCCCCCCCHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHc---CcHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 11121111 0112234 33333 334566777888899999999999887654
Q ss_pred cchhccccccHHHhhhc
Q 040924 191 AKIEQLQQEDVIDVLLQ 207 (208)
Q Consensus 191 ~~~~~~~~~d~l~~ll~ 207 (208)
. ..+ .|+++.|++
T Consensus 238 ~--~~~--~d~~~~ll~ 250 (476)
T 3e6i_A 238 P--NCP--RDLTDCLLV 250 (476)
T ss_dssp T--TSC--CSHHHHHHH
T ss_pred C--CCC--ccHHHHHHH
Confidence 3 233 688887763
No 4
>3tbg_A Cytochrome P450 2D6; monooxygenase, thioridazine, oxidoreductase; HET: RTZ HEM; 2.10A {Homo sapiens} PDB: 3qm4_A* 2f9q_A*
Probab=99.91 E-value=1.8e-23 Score=167.49 Aligned_cols=117 Identities=27% Similarity=0.511 Sum_probs=97.2
Q ss_pred CCCCCCCCCCCCCccccccccCCCCCchHHHHHHHHhhCCeEEEEcCCcCEEEecCHHHHHHHHHHcCccCCCCCChHHH
Q 040924 5 RNNTKLPPGPWGLPFIGTLHQLDVSKPHVLFWELSKKYGPLMSLRLGFSPSLVVSSAKMAKEILKTHDLQFCSRPALVAQ 84 (208)
Q Consensus 5 ~~~~~~~pgp~~~p~~g~~~~~~~~~~~~~~~~~~~~yG~v~~~~~~~~~~v~i~dp~~~~~i~~~~~~~~~~~~~~~~~ 84 (208)
.++.++||||+++|++||++.+...+.+..+.+|+++|||||++++|+.++|+|+||+++++||.+++..|.+++.....
T Consensus 6 ss~~kLPPGP~~lP~iGn~~~~~~~~~~~~~~~~~~kYG~i~~~~~g~~~~vvv~~p~~i~~vl~~~~~~f~~r~~~~~~ 85 (479)
T 3tbg_A 6 SSKGKLPPGPLPLPGLGNLLHVDFQNTPYCFDQLRRRFGDVFSLQLAWTPVVVLNGLAAVREALVTHGEDTADRPPVPIT 85 (479)
T ss_dssp ---CCCCCCSCCBTTTBTGGGCCTTSHHHHHHHHHHHHCSEEEEEETTEEEEEEEHHHHHHHHHTTTGGGSCBCCCCGGG
T ss_pred CCCCCCCCCCCCcCcccchHhhcCCCHHHHHHHHHHHhCCEEEEEECCeeEEEECCHHHHHHHHHhCChhhcCCCchHHH
Confidence 34457999999999999999986678899999999999999999999999999999999999999888888888765555
Q ss_pred HHhhc--CCcceeeCCCChHHHHHHHHHHHHhhccccccc
Q 040924 85 QKLSY--NGLDLAFSPYDEYWREIRKICAIHLFNSNRGQN 122 (208)
Q Consensus 85 ~~~~~--~~~~l~~~~~g~~w~~~Rk~l~~~~f~~~~l~~ 122 (208)
..+.. .+.+++++.+|+.|+++|++++ +.|+...+..
T Consensus 86 ~~~~~~~~~~~~~~~~~g~~w~~~R~~~~-~~~~~~~~~~ 124 (479)
T 3tbg_A 86 QILGFGPRSQGVFLARYGPAWREQRRFSV-STLRNLGLGK 124 (479)
T ss_dssp GGGTCBTTBCCSTTCCSSHHHHHHHHHHH-HHHHHTTSTT
T ss_pred HHhccCCCCCceeeCCCCHHHHHHHHHHH-HHhcchhhhH
Confidence 44332 2456676766999999999999 9998777653
No 5
>3gw9_A Sterol 14alpha-demethylase; CYP51, cytochrome P450, heme, oxidoreductase, monooxygenase, sterol biosynthesis, lipids, endoplasmic reticulum; HET: HEM VNI; 1.87A {Trypanosoma brucei} PDB: 3tik_A* 3g1q_A* 3p99_A* 2wv2_A* 2x2n_A* 3khm_A* 3k1o_A* 3ksw_A* 2wx2_A* 2wuz_A* 3l4d_A*
Probab=99.91 E-value=5.2e-24 Score=169.41 Aligned_cols=192 Identities=17% Similarity=0.195 Sum_probs=141.4
Q ss_pred CCCCCCCCC-CccccccccCCCCCchHHHHHHHHhhC-CeEEEEcCCcCEEEecCHHHHHHHHHHcCccCCCCCChHHHH
Q 040924 8 TKLPPGPWG-LPFIGTLHQLDVSKPHVLFWELSKKYG-PLMSLRLGFSPSLVVSSAKMAKEILKTHDLQFCSRPALVAQQ 85 (208)
Q Consensus 8 ~~~~pgp~~-~p~~g~~~~~~~~~~~~~~~~~~~~yG-~v~~~~~~~~~~v~i~dp~~~~~i~~~~~~~~~~~~~~~~~~ 85 (208)
.+.||||++ +|++||++.+ ..+++..+.+++++|| ++|++++++.+.|+|+||+++++|+.+++..|.+++......
T Consensus 2 ~~~PPg~p~~~P~iG~~~~~-~~~~~~~~~~~~~~yG~~i~~~~~~~~~~vvv~~p~~~~~il~~~~~~~~~~~~~~~~~ 80 (450)
T 3gw9_A 2 GKLPPVYPVTVPILGHIIQF-GKSPLGFMQECKRQLKSGIFTINIVGKRVTIVGDPHEHSRFFLPRNEVLSPREVYSFMV 80 (450)
T ss_dssp CSCCCBCCCCSTTTBTHHHH-HHCHHHHHHHHHHHHTCSEEEEEETTEEEEEECCGGGTHHHHSSCTTTEESTGGGGGGH
T ss_pred CCCCCCCCCCcchhccHHHH-ccCHHHHHHHHHHHhCCCeEEEEECCEeEEEEeCHHHHHHHHhCChhhccchhhHHHHH
Confidence 578999665 9999999888 6788999999999999 999999999999999999999999987777777665433333
Q ss_pred HhhcCCcceeeCCCChHHHHHHHHHHHHhhccccccccccHHHH---HHHH-Hhc-C-----------------------
Q 040924 86 KLSYNGLDLAFSPYDEYWREIRKICAIHLFNSNRGQNFRPIEKM---NLIH-QQA-S----------------------- 137 (208)
Q Consensus 86 ~~~~~~~~l~~~~~g~~w~~~Rk~l~~~~f~~~~l~~~~~~~~~---~~l~-~~~-~----------------------- 137 (208)
... |.|++++.+|+.|+++|++++ ++|+.+.++.+.+.+.+ +.++ .+. .
T Consensus 81 ~~~--g~~~~~~~~~~~~~~~R~~~~-~~f~~~~l~~~~~~i~~~~~~ll~~~~~~~~~~vd~~~~~~~~~~~~i~~~~f 157 (450)
T 3gw9_A 81 PVF--GEGVAYAAPYPRMREQLNFLA-EELTIAKFQNFVPAIQHEVRKFMAANWDKDEGEINLLEDCSTMIINTACQCLF 157 (450)
T ss_dssp HHH--CTTSGGGSCHHHHHHHHHHHH-HTTSGGGCTTHHHHHHHHHHHHHHHHSCSSEEEEEHHHHHHHHHHHHHHHHHS
T ss_pred HHh--cCCcccCCCcHHHHHHHHHHH-HHHhHHHHHHHHHHHHHHHHHHHHHHhccCCCcccHHHHHHHHHHHHHHHHHc
Confidence 333 567766545999999999999 99999999999998887 4444 322 1
Q ss_pred h---------hHHHHHh--------hhccccccccccccccchhhhhhhhHHHHHHHHHHHHHHhhcccccchhcccccc
Q 040924 138 R---------PLFVELV--------LARGYFPFIGWIDKLTGMLQRPQNNFQEIDRVYQELIDKHLDPNRAKIEQLQQED 200 (208)
Q Consensus 138 ~---------~~~~~~~--------~~~~~~p~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d 200 (208)
+ .++.+.+ ....++|++.+++. +..++..++...+.+++.++|+++++......... .|
T Consensus 158 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~lp~--~~~~~~~~~~~~~~~~~~~~i~~r~~~~~~~~~~~--~d 233 (450)
T 3gw9_A 158 GEDLRKRLDARRFAQLLAKMESSLIPAAVFLPILLKLPL--PQSARCHEARTELQKILSEIIIARKEEEVNKDSST--SD 233 (450)
T ss_dssp CHHHHHHSCHHHHHHHHHHHHHTCCGGGGTCGGGGGSCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCC--CS
T ss_pred CcchhhhhhhHHHHHHHHHHHhccccchhcccchhccCC--chhHHHHHHHHHHHHHHHHHHHHHHHhhcccCCcc--ch
Confidence 1 1112211 22345666655542 44566778888999999999998875432111233 78
Q ss_pred HHHhhhc
Q 040924 201 VIDVLLQ 207 (208)
Q Consensus 201 ~l~~ll~ 207 (208)
+++.|++
T Consensus 234 ~l~~ll~ 240 (450)
T 3gw9_A 234 LLSGLLS 240 (450)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998875
No 6
>3czh_A Cytochrome P450 2R1; vitamin D, vitamin S 25-hydroxylase, drug metabolism, structural genomics, structural genomics consortium, SGC; HET: BCD HEM D2V; 2.30A {Homo sapiens} SCOP: a.104.1.1 PDB: 2ojd_A* 3c6g_A* 3dl9_A*
Probab=99.91 E-value=1.9e-23 Score=167.81 Aligned_cols=196 Identities=27% Similarity=0.400 Sum_probs=135.4
Q ss_pred CCCCCCCCCCCCCCccccccccCCCCC--chHHHHHHHHhhCCeEEEEcCCcCEEEecCHHHHHHHHHHcCccCCCCCCh
Q 040924 4 SRNNTKLPPGPWGLPFIGTLHQLDVSK--PHVLFWELSKKYGPLMSLRLGFSPSLVVSSAKMAKEILKTHDLQFCSRPAL 81 (208)
Q Consensus 4 ~~~~~~~~pgp~~~p~~g~~~~~~~~~--~~~~~~~~~~~yG~v~~~~~~~~~~v~i~dp~~~~~i~~~~~~~~~~~~~~ 81 (208)
++++.+.||||+++|++||++.+.... ++..+.+++++||+|+++++++.++|+++||+.+++|+.+++..|.+++..
T Consensus 7 ~~~~~~lpPgP~~~p~~G~~~~~~~~~~~~~~~~~~l~~~yG~v~~~~~g~~~~v~v~~~~~~~~vl~~~~~~f~~~~~~ 86 (481)
T 3czh_A 7 QRRPMGFPPGPPGLPFIGNIYSLAASSELPHVYMRKQSQVYGEIFSLDLGGISTVVLNGYDVVKECLVHQSEIFADRPCL 86 (481)
T ss_dssp -----CCCCCCCCBTTTBHHHHHHHCSSCHHHHHHHHHHHHCSEEEEEETTEEEEEEESHHHHHHHHTTTTTTTCBCCCC
T ss_pred cCCCCCCCCCCCCCcccccHhhcCcccCcHHHHHHHHHHHhCCEEEEEECCccEEEECCHHHHHHHHhhchHhhCCCCCc
Confidence 445667899999999999998773333 788999999999999999999889999999999999998776678777654
Q ss_pred HHHHHhhcCCcceeeCCCChHHHHHHHHHHHHhhccccc--cccccHHHH------HHHHHhcC----------------
Q 040924 82 VAQQKLSYNGLDLAFSPYDEYWREIRKICAIHLFNSNRG--QNFRPIEKM------NLIHQQAS---------------- 137 (208)
Q Consensus 82 ~~~~~~~~~~~~l~~~~~g~~w~~~Rk~l~~~~f~~~~l--~~~~~~~~~------~~l~~~~~---------------- 137 (208)
.....+. ++.|++++.+|+.|+++|++++ ++|+...+ ..+.+.+.+ +.+.+..+
T Consensus 87 ~~~~~~~-~~~~~~~~~~g~~w~~~R~~~~-~~f~~~~~~~~~~~~~i~~~~~~l~~~l~~~~~~~~d~~~~~~~~~~~v 164 (481)
T 3czh_A 87 PLFMKMT-KMGGLLNSRYGRGWVDHRRLAV-NSFRYFGYGQKSFESKILEETKFFNDAIETYKGRPFDFKQLITNAVSNI 164 (481)
T ss_dssp HHHHHHH-TTCSSTTCCSSHHHHHHHHHHH-HHHHHTTTTSTTHHHHHHHHHHHHHHHHHTTTTCCBCCHHHHHHHHHHH
T ss_pred HHHHhhc-CCCCeEeCCCChHHHHHHHHHH-HHHHHhcCChHHHHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHH
Confidence 4443332 3456555444999999999999 99987654 566777766 22322111
Q ss_pred -------------hhHHHHHh-------h--------hccccccccccccccchhhhhhhhHHHHHHHHHHHHHHhhccc
Q 040924 138 -------------RPLFVELV-------L--------ARGYFPFIGWIDKLTGMLQRPQNNFQEIDRVYQELIDKHLDPN 189 (208)
Q Consensus 138 -------------~~~~~~~~-------~--------~~~~~p~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 189 (208)
+.++..++ . ....+|++.+++. +..++..++...+.+++.++|+++++..
T Consensus 165 i~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~lp~--~~~~~~~~~~~~~~~~~~~~i~~r~~~~ 242 (481)
T 3czh_A 165 TNLIIFGERFTYEDTDFQHMIELFSENVELAASASVFLYNAFPWIGILPF--GKHQQLFRNAAVVYDFLSRLIEKASVNR 242 (481)
T ss_dssp HHHHHHSSCCCTTCHHHHHHHHHHHHHHHHTTSHHHHHHHHCGGGGGCSS--SHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHcCCCCCCCCHHHHHHHHHHHHHHhhhccchhHHhhhhHHHHhCCc--hHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 11222211 0 2334566544431 3456677788889999999999988764
Q ss_pred ccchhccccccHHHhhhc
Q 040924 190 RAKIEQLQQEDVIDVLLQ 207 (208)
Q Consensus 190 ~~~~~~~~~~d~l~~ll~ 207 (208)
+. ... .|+++.|++
T Consensus 243 ~~--~~~--~d~l~~ll~ 256 (481)
T 3czh_A 243 KP--QLP--QHFVDAYLD 256 (481)
T ss_dssp CT--TCC--SSHHHHHHH
T ss_pred CC--Cch--HHHHHHHHH
Confidence 33 233 688888874
No 7
>2hi4_A Cytochrome P450 1A2; CYP1A2, monooxygenase, drug metabolizing enzyme, alpha-naphthoflavone, benzo(H)flavone, 7,8- benzoflavone, oxidoreductase; HET: HEM BHF; 1.95A {Homo sapiens}
Probab=99.91 E-value=3.1e-23 Score=167.12 Aligned_cols=195 Identities=23% Similarity=0.443 Sum_probs=135.7
Q ss_pred CCCCCCCCC--CCCCCCccccccccCCCCCchHHHHHHHHhhCCeEEEEcCCcCEEEecCHHHHHHHHHHcCccCCCCCC
Q 040924 3 TSRNNTKLP--PGPWGLPFIGTLHQLDVSKPHVLFWELSKKYGPLMSLRLGFSPSLVVSSAKMAKEILKTHDLQFCSRPA 80 (208)
Q Consensus 3 ~~~~~~~~~--pgp~~~p~~g~~~~~~~~~~~~~~~~~~~~yG~v~~~~~~~~~~v~i~dp~~~~~i~~~~~~~~~~~~~ 80 (208)
+++++.+++ |||+++|++||++.+ .++++..+.+++++||||+++++++.++|+++||+++++|+.+++..|.+++.
T Consensus 8 ~~~~~~~lp~~PgP~~~p~~G~~~~~-~~~~~~~~~~l~~~yG~v~~~~~g~~~~vvv~~~~~i~~il~~~~~~f~~r~~ 86 (495)
T 2hi4_A 8 RPRVPKGLKSPPEPWGWPLLGHVLTL-GKNPHLALSRMSQRYGDVLQIRIGSTPVLVLSRLDTIRQALVRQGDDFKGRPD 86 (495)
T ss_dssp --CCCTTCBCCCCCCCBTTTBTHHHH-TTCHHHHHHHHHHHHCSEEEEEETTEEEEEECSHHHHHHHHTTTGGGSCBCCC
T ss_pred cccCCCCCCCCCCCCCCcceeeHHhc-CccHHHHHHHHHHHhCCEEEEEECCccEEEECCHHHHHHHHHhcchhhCCCCC
Confidence 344455555 999999999999887 56788999999999999999999999999999999999999877667877765
Q ss_pred hHHHHHhhcCCcceeeC-CCChHHHHHHHHHHHHhhcc---ccc---c---ccccHHHH------HHHHH--hcC-----
Q 040924 81 LVAQQKLSYNGLDLAFS-PYDEYWREIRKICAIHLFNS---NRG---Q---NFRPIEKM------NLIHQ--QAS----- 137 (208)
Q Consensus 81 ~~~~~~~~~~~~~l~~~-~~g~~w~~~Rk~l~~~~f~~---~~l---~---~~~~~~~~------~~l~~--~~~----- 137 (208)
......+ ..+.|++++ ++|+.|+++|++++ ++|+. ..+ + .+.+.+.+ +.+.+ ..+
T Consensus 87 ~~~~~~~-~~~~~l~~~~~~g~~w~~~Rr~~~-~~f~~~s~~~~~~~~~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~d~ 164 (495)
T 2hi4_A 87 LYTSTLI-TDGQSLTFSTDSGPVWAARRRLAQ-NALNTFSIASDPASSSSCYLEEHVSKEAKALISRLQELMAGPGHFDP 164 (495)
T ss_dssp CHHHHTS-TTSCCTTTSSCCSHHHHHHHHHHH-HHHHHTTTSBCSSCSSCBHHHHHHHHHHHHHHHHHHHHHHTTSCBCH
T ss_pred cHHHHHh-cCCCCEEEcCCCChHHHHHHHHHH-HHHHHhccCcccccchhhhHHHHHHHHHHHHHHHHHHhccCCCccch
Confidence 4433322 245788887 44999999999999 88653 222 1 56676665 33332 111
Q ss_pred ------------------------hhHHHHHh-------------hhccccccccccccccchhhhhhhhHHHHHHHHHH
Q 040924 138 ------------------------RPLFVELV-------------LARGYFPFIGWIDKLTGMLQRPQNNFQEIDRVYQE 180 (208)
Q Consensus 138 ------------------------~~~~~~~~-------------~~~~~~p~l~~l~~~~~~~~~~~~~~~~~~~~~~~ 180 (208)
+.++..++ ....++|++.+++. +..++..++...+.+++.+
T Consensus 165 ~~~~~~~~~dvi~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~lp~--~~~~~~~~~~~~~~~~~~~ 242 (495)
T 2hi4_A 165 YNQVVVSVANVIGAMCFGQHFPESSDEMLSLVKNTHEFVETASSGNPLDFFPILRYLPN--PALQRFKAFNQRFLWFLQK 242 (495)
T ss_dssp HHHHHHHHHHHHHHHHHGGGSCTTCHHHHHHHTTTHHHHTTSSTTCGGGTCGGGGGSCC--HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHhcccchHHHHhHHHHhcCc--hHHHHHHHHHHHHHHHHHH
Confidence 11122221 12234555544431 3356677788889999999
Q ss_pred HHHHhhcccccchhccccccHHHhhh
Q 040924 181 LIDKHLDPNRAKIEQLQQEDVIDVLL 206 (208)
Q Consensus 181 ~i~~~~~~~~~~~~~~~~~d~l~~ll 206 (208)
+|+++++..+. ... .|+++.|+
T Consensus 243 ~i~~r~~~~~~--~~~--~d~l~~ll 264 (495)
T 2hi4_A 243 TVQEHYQDFDK--NSV--RDITGALF 264 (495)
T ss_dssp HHHHHHHTCCT--TCC--CSHHHHHH
T ss_pred HHHHHHHhhcc--ccc--ccHHHHHH
Confidence 99998876432 233 68998887
No 8
>2fdv_A Cytochrome P450 2A6; CYP2A6, monooxygenase, drug metabolizing enzyme, coumarin 7-hydroxylase, nicotine oxidase, oxidoreductase; HET: HEM D2G; 1.65A {Homo sapiens} PDB: 1z11_A* 1z10_A* 2fdu_A* 2fdw_A* 2fdy_A* 3t3r_A* 2pg5_A* 2pg7_A* 2pg6_A* 3t3q_A* 3ebs_A* 2p85_A* 3t3s_A*
Probab=99.91 E-value=2.8e-23 Score=166.63 Aligned_cols=192 Identities=20% Similarity=0.331 Sum_probs=137.8
Q ss_pred CCCCCCCCCCCCccccccccCCCCCchHHHHHHHHhhCCeEEEEcCCcCEEEecCHHHHHHHHHHcCccCCCCCChHHHH
Q 040924 6 NNTKLPPGPWGLPFIGTLHQLDVSKPHVLFWELSKKYGPLMSLRLGFSPSLVVSSAKMAKEILKTHDLQFCSRPALVAQQ 85 (208)
Q Consensus 6 ~~~~~~pgp~~~p~~g~~~~~~~~~~~~~~~~~~~~yG~v~~~~~~~~~~v~i~dp~~~~~i~~~~~~~~~~~~~~~~~~ 85 (208)
++.+.||||+++|++||++.+..++++..+.+++++||+|+++++++.+.|+++||+.+++|+.++...|.+++......
T Consensus 7 ~~~~~pPgP~~~p~iG~~~~~~~~~~~~~~~~l~~~yG~v~~~~~~~~~~v~v~~~~~i~~il~~~~~~f~~~~~~~~~~ 86 (476)
T 2fdv_A 7 SKGKLPPGPTPLPFIGNYLQLNTEQMYNSLMKISERYGPVFTIHLGPRRVVVLCGHDAVREALVDQAEEFSGRGEQATFD 86 (476)
T ss_dssp -CCBCCCCCCCBTTTBTGGGCCTTBHHHHHHHHHHHHCSEEEEEETTEEEEEECSHHHHHHHHTTTTTTTCEECCCHHHH
T ss_pred ccCCCCCCCCCCcccccHhhcCCcchHHHHHHHHHHhCCEEEEEECCccEEEECCHHHHHHHHhcChHhhCCCCCcHHHh
Confidence 34478999999999999998855778999999999999999999998899999999999999976666777665543333
Q ss_pred HhhcCCcceeeCCCChHHHHHHHHHHHHhhccccc--cccccHHHH------HHHHHhcC--------------------
Q 040924 86 KLSYNGLDLAFSPYDEYWREIRKICAIHLFNSNRG--QNFRPIEKM------NLIHQQAS-------------------- 137 (208)
Q Consensus 86 ~~~~~~~~l~~~~~g~~w~~~Rk~l~~~~f~~~~l--~~~~~~~~~------~~l~~~~~-------------------- 137 (208)
... .+.|+++++ |+.|+++|++++ ++|+...+ +.+.+.+.+ +.+....+
T Consensus 87 ~~~-~~~~l~~~~-g~~~~~~Rr~~~-~~f~~~~~~~~~~~~~i~~~~~~l~~~l~~~~~~~vd~~~~~~~~~~~vi~~~ 163 (476)
T 2fdv_A 87 WVF-KGYGVVFSN-GERAKQLRRFSI-ATLRDFGVGKRGIEERIQEEAGFLIDALRGTGGANIDPTFFLSRTVSNVISSI 163 (476)
T ss_dssp HHH-TTCSSSSCC-HHHHHHHHHHHH-HHHHHTTTTSHHHHHHHHHHHHHHHHHHHHTTTCCBCCHHHHHHHHHHHHHHH
T ss_pred hhc-CCCCeEecC-chHHHHHHHHHH-HHHHHhCCChhhHHHHHHHHHHHHHHHHHhcCCCccChHHHHHHHHHHHHHHH
Confidence 332 367899887 999999999999 99988776 667777776 33322211
Q ss_pred ---------hhHHHHHh----h-----------hcccccc-ccccccccchhhhhhhhHHHHHHHHHHHHHHhhcccccc
Q 040924 138 ---------RPLFVELV----L-----------ARGYFPF-IGWIDKLTGMLQRPQNNFQEIDRVYQELIDKHLDPNRAK 192 (208)
Q Consensus 138 ---------~~~~~~~~----~-----------~~~~~p~-l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 192 (208)
+.++..+. . ..+.+|+ +.++ ++..++..++...+.+++.++|+++++..+.
T Consensus 164 ~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~l---~~~~~~~~~~~~~~~~~~~~~i~~r~~~~~~- 239 (476)
T 2fdv_A 164 VFGDRFDYKDKEFLSLLRMMLGIFQFTSTSTGQLYEMFSSVMKHL---PGPQQQAFQLLQGLEDFIAKKVEHNQRTLDP- 239 (476)
T ss_dssp HHSSCCCTTCHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHTTS---CSHHHHHHHHHHHHHHHHHHHHHHHHTTCCT-
T ss_pred HcCCcCCCCCHHHHHHHHHHHHHHHhhcccccchhhhhhhHHHhc---CcHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-
Confidence 11222221 0 1123444 2233 2334567778888999999999998876432
Q ss_pred hhccccccHHHhhhc
Q 040924 193 IEQLQQEDVIDVLLQ 207 (208)
Q Consensus 193 ~~~~~~~d~l~~ll~ 207 (208)
..+ .|+++.|++
T Consensus 240 -~~~--~d~l~~ll~ 251 (476)
T 2fdv_A 240 -NSP--RDFIDSFLI 251 (476)
T ss_dssp -TSC--CSHHHHHHH
T ss_pred -CCC--ccHHHHHHH
Confidence 233 688888764
No 9
>3qz1_A Steroid 21-hydroxylase; P450 monooxygenase, oxidoreductase; HET: HEM 3QZ; 3.00A {Bos taurus}
Probab=99.90 E-value=1.7e-23 Score=168.49 Aligned_cols=191 Identities=21% Similarity=0.346 Sum_probs=136.1
Q ss_pred CCCCCCCCCCCCCCccccccccCCCCCchHHHHHHHHhhCCeEEEEcCCcCEEEecCHHHHHHHHHHcCccCCCCCChHH
Q 040924 4 SRNNTKLPPGPWGLPFIGTLHQLDVSKPHVLFWELSKKYGPLMSLRLGFSPSLVVSSAKMAKEILKTHDLQFCSRPALVA 83 (208)
Q Consensus 4 ~~~~~~~~pgp~~~p~~g~~~~~~~~~~~~~~~~~~~~yG~v~~~~~~~~~~v~i~dp~~~~~i~~~~~~~~~~~~~~~~ 83 (208)
.+++.+.||||++ ++.+..++++..+.+|+++||||+++++|+.+.|+|+||+++++||.+++..|.+++....
T Consensus 24 ~~~~~~lPPGP~~------l~~~~~~~~~~~~~~l~~~yG~v~~~~~g~~~~vvv~~~~~~~~il~~~~~~f~~r~~~~~ 97 (496)
T 3qz1_A 24 KLRNLHLPPLVPG------FLHLLQPNLPIHLLSLTQKLGPVYRLRLGLQEVVVLNSKRTIEEAMIRKWVDFAGRPQIPS 97 (496)
T ss_dssp -----CCCCBCSC------SCTTSSSCHHHHHHHGGGTSCSEEEECSSSSCEEEECSTTHHHHTTTTSCSTTCBCCCCTT
T ss_pred hccCCCCCcCCcc------ccccCCCcchHHHHHHHHHhCCEEEEEeCCcCEEEECCHHHHHHHHHhCcHhhCCCCCcch
Confidence 3456788999987 4555467899999999999999999999999999999999999999887778877775443
Q ss_pred HHHhhcCCcceeeCCCChHHHHHHHHHHHHhhccccccccccHHHH------HHHHHhcC--------------------
Q 040924 84 QQKLSYNGLDLAFSPYDEYWREIRKICAIHLFNSNRGQNFRPIEKM------NLIHQQAS-------------------- 137 (208)
Q Consensus 84 ~~~~~~~~~~l~~~~~g~~w~~~Rk~l~~~~f~~~~l~~~~~~~~~------~~l~~~~~-------------------- 137 (208)
......++.|++++++|+.|+++||+++ ++|+.+.++.+.+.+.+ +.+.+..+
T Consensus 98 ~~~~~~~~~~l~~~~~g~~w~~~Rr~~~-~~f~~~~~~~~~~~i~~~~~~l~~~l~~~~~~~vd~~~~~~~~~~dvi~~~ 176 (496)
T 3qz1_A 98 YKLVSQRCQDISLGDYSLLWKAHKKLTR-SALLLGTRSSMEPWVDQLTQEFCERMRVQAGAPVTIQKEFSLLTCSIICYL 176 (496)
T ss_dssp TTTSCTTCCCSSSSCCSHHHHHHHHHHH-HHHHC--CCCHHHHHHHHHHHHHHHHHTTCSCCCHHHHHHTHHHHHHTTTT
T ss_pred HHHhcCCCCceEECCCCHHHHHHHHHHH-HHHhhccHhhHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHHHHHHH
Confidence 3333223348998877999999999999 99998778888888887 23322112
Q ss_pred ------hhHHHHHh---------------hhccccccccccccccchhhhhhhhHHHHHHHHHHHHHHhhcccccchhcc
Q 040924 138 ------RPLFVELV---------------LARGYFPFIGWIDKLTGMLQRPQNNFQEIDRVYQELIDKHLDPNRAKIEQL 196 (208)
Q Consensus 138 ------~~~~~~~~---------------~~~~~~p~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 196 (208)
+.++..+. ...+++|++.+++. +..+++.++...+.+++.++|+++++..+. ...
T Consensus 177 ~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~lp~--~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~~ 252 (496)
T 3qz1_A 177 TFGNKEDTLVHAFHDCVQDLMKTWDHWSIQILDMVPFLRFFPN--PGLWRLKQAIENRDHMVEKQLRRHKESMVA--GQW 252 (496)
T ss_dssp STTCCCHHHHHHHHHHHHTTTTTTSSHHHHHHHHCGGGCCCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHSCCS--SCC
T ss_pred hcCCCCChHHHHHHHHHHHHHHHhccchhHHHHhHHHHHhCCh--HHHHHHHHHHHHHHHHHHHHHHHHHhhccC--CCc
Confidence 11122111 12234666665542 446678888889999999999998877543 233
Q ss_pred ccccHHHhhhc
Q 040924 197 QQEDVIDVLLQ 207 (208)
Q Consensus 197 ~~~d~l~~ll~ 207 (208)
.|+++.|++
T Consensus 253 --~d~l~~ll~ 261 (496)
T 3qz1_A 253 --RDMTDYMLQ 261 (496)
T ss_dssp --SSSHHHHTT
T ss_pred --cchHHHHHH
Confidence 788888875
No 10
>1po5_A Cytochrome P450 2B4; oxidoreductase, membrane protein, CYP 2B4, CYP LM2, cytochro monooxygenase; HET: HEM; 1.60A {Oryctolagus cuniculus} SCOP: a.104.1.1 PDB: 3mvr_A* 2bdm_A* 3g5n_A* 3g93_A* 3kw4_A* 3me6_A* 1suo_A* 3r1a_A* 3r1b_A* 2q6n_A* 3tk3_A* 3ibd_A* 3qoa_A* 3qu8_A*
Probab=99.90 E-value=3.8e-23 Score=165.82 Aligned_cols=192 Identities=24% Similarity=0.434 Sum_probs=134.0
Q ss_pred CCCCCCCCCCCCCccccccccCCCCCchHHHHHHHHhhCCeEEEEcCCcCEEEecCHHHHHHHHHHcCccCCCCCChHHH
Q 040924 5 RNNTKLPPGPWGLPFIGTLHQLDVSKPHVLFWELSKKYGPLMSLRLGFSPSLVVSSAKMAKEILKTHDLQFCSRPALVAQ 84 (208)
Q Consensus 5 ~~~~~~~pgp~~~p~~g~~~~~~~~~~~~~~~~~~~~yG~v~~~~~~~~~~v~i~dp~~~~~i~~~~~~~~~~~~~~~~~ 84 (208)
+++.+.||||+++|++||++.+..++++..+.+++++||+|+++++++.+.|+++||+.+++||.+++..|.+++.....
T Consensus 6 ~~~~~~pPgP~~~p~iG~~~~~~~~~~~~~~~~l~~~yG~v~~~~~g~~~~v~v~~~~~i~~il~~~~~~f~~~~~~~~~ 85 (476)
T 1po5_A 6 SSKGKLPPGPSPLPVLGNLLQMDRKGLLRSFLRLREKYGDVFTVYLGSRPVVVLCGTDAIREALVDQAEAFSGRGKIAVV 85 (476)
T ss_dssp ---CCCCCCSCCBTTTBTGGGCCTTCHHHHHHHHHHHHCSEEEEEETTEEEEEECSHHHHHHHHTTTTTTTCEECCGGGG
T ss_pred cCCCCCCcCCCCCCccccHHhccCCcHHHHHHHHHHHhCCEEEEEECCccEEEECCHHHHHHHHHhCcHhhCCCCCcHHH
Confidence 34457899999999999999875577899999999999999999999888999999999999997666677766543322
Q ss_pred HHhhcCCcceeeCCCChHHHHHHHHHHHHhhcccc--ccccccHHHH------HHHHHhcC-------------------
Q 040924 85 QKLSYNGLDLAFSPYDEYWREIRKICAIHLFNSNR--GQNFRPIEKM------NLIHQQAS------------------- 137 (208)
Q Consensus 85 ~~~~~~~~~l~~~~~g~~w~~~Rk~l~~~~f~~~~--l~~~~~~~~~------~~l~~~~~------------------- 137 (208)
... ..+.|+++++ |+.|+++|++++ ++|+... ++.+.+.+.+ +.+.+..+
T Consensus 86 ~~~-~~~~~l~~~~-g~~w~~~Rr~~~-~~f~~~~~~~~~~~~~i~~~~~~l~~~l~~~~~~~~d~~~~~~~~~~~vi~~ 162 (476)
T 1po5_A 86 DPI-FQGYGVIFAN-GERWRALRRFSL-ATMRDFGMGKRSVEERIQEEARCLVEELRKSKGALLDNTLLFHSITSNIICS 162 (476)
T ss_dssp CSC-CSSCCCCCSS-HHHHHHHHHHHH-HHHHHSCCCHHHHHHHHHHHHHHHHHHHHHTTTCCBCCHHHHHHHHHHHHHH
T ss_pred Hhh-cCCCceEecC-CcHHHHHHHHHH-HHHHHhCCChhHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHHHHHH
Confidence 222 2457899887 999999999999 9998874 3566777766 33322211
Q ss_pred ----------hhHHHHHh----hh-----------cccccc-ccccccccchhhhhhhhHHHHHHHHHHHHHHhhccccc
Q 040924 138 ----------RPLFVELV----LA-----------RGYFPF-IGWIDKLTGMLQRPQNNFQEIDRVYQELIDKHLDPNRA 191 (208)
Q Consensus 138 ----------~~~~~~~~----~~-----------~~~~p~-l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 191 (208)
+.++..++ .. ...+|+ ++++ +...++..++...+.+++.++|+++++..+.
T Consensus 163 ~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~l---p~~~~~~~~~~~~~~~~~~~~i~~r~~~~~~ 239 (476)
T 1po5_A 163 IVFGKRFDYKDPVFLRLLDLFFQSFSLISSFSSQVFELFSGFLKHF---PGTHRQIYRNLQEINTFIGQSVEKHRATLDP 239 (476)
T ss_dssp HHHSSCCCTTCHHHHHHHHHHHHHTTTCCTTHHHHHHHTHHHHHTS---SCSHHHHHHHHHHHHHHHHHHHHHHHTTCCT
T ss_pred HHcCCCCCCCCHHHHHHHHHHHHHHhhhcchhhHHHHhhhHHHHhc---CcHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 11222222 00 112332 2222 2334566777888999999999998876433
Q ss_pred chhccccccHHHhhh
Q 040924 192 KIEQLQQEDVIDVLL 206 (208)
Q Consensus 192 ~~~~~~~~d~l~~ll 206 (208)
..+ .|+++.|+
T Consensus 240 --~~~--~d~l~~ll 250 (476)
T 1po5_A 240 --SNP--RDFIDVYL 250 (476)
T ss_dssp --TSC--CSHHHHHH
T ss_pred --CCc--ccHHHHHH
Confidence 233 68888876
No 11
>3k9v_A 1,25-dihydroxyvitamin D(3) 24-hydroxylase, mitochondrial; mitochondrial cytochrome P450, monotopic membrane protein, monooxygenase; HET: HEM CPS; 2.50A {Rattus norvegicus} PDB: 3k9y_A*
Probab=99.89 E-value=1.8e-22 Score=161.91 Aligned_cols=122 Identities=20% Similarity=0.306 Sum_probs=100.2
Q ss_pred CCCCCCCCCCCCCccccccccCC----CCCchHHHHHHHHhhCCeEEEEcCCcCEEEecCHHHHHHHHHHcCccCCCCCC
Q 040924 5 RNNTKLPPGPWGLPFIGTLHQLD----VSKPHVLFWELSKKYGPLMSLRLGFSPSLVVSSAKMAKEILKTHDLQFCSRPA 80 (208)
Q Consensus 5 ~~~~~~~pgp~~~p~~g~~~~~~----~~~~~~~~~~~~~~yG~v~~~~~~~~~~v~i~dp~~~~~i~~~~~~~~~~~~~ 80 (208)
.++.+.+|||+++|++||++.+. .++.+..+.+++++||+|+++++|+.+.|+++||+++++|+.+. ..|.+++.
T Consensus 20 ~~pl~~~PGP~~~p~iG~~~~~~~~~~~~~~~~~~~~l~~~YG~i~~~~~g~~~~vvv~dp~~~~~il~~~-~~~~~r~~ 98 (482)
T 3k9v_A 20 TRNVTDLPGPTNWPLLGSLLEIFWKGGLKKQHDTLAEYHKKYGQIFRMKLGSFDSVHLGSPSLLEALYRTE-SAHPQRLE 98 (482)
T ss_dssp CEEGGGCCCSCCCTTTBTHHHHHHTTCGGGHHHHHHHHHHHHCSEEEEEETTEEEEEECSHHHHHHHHHTC-CSSCCCCC
T ss_pred cCCCCCCCCCCCCCccccHHHHhccCCcccHHHHHHHHHHHcCCEEEEccCCCCEEEEcCHHHHHHHHHhc-CCCCCCCC
Confidence 34677899999999999998773 24678899999999999999999999999999999999999764 56777764
Q ss_pred hH---HHHHhhcCCcceeeCCCChHHHHHHHHHHHHhh-ccccccccccHHHH
Q 040924 81 LV---AQQKLSYNGLDLAFSPYDEYWREIRKICAIHLF-NSNRGQNFRPIEKM 129 (208)
Q Consensus 81 ~~---~~~~~~~~~~~l~~~~~g~~w~~~Rk~l~~~~f-~~~~l~~~~~~~~~ 129 (208)
.. .+......+.|+++++ |+.|+++||+++ +.| +.+.++.+.+.+.+
T Consensus 99 ~~~~~~~~~~~~~~~~l~~~~-g~~w~~~Rr~~~-~~f~~~~~~~~~~~~i~~ 149 (482)
T 3k9v_A 99 IKPWKAYRDHRNEAYGLMILE-GQEWQRVRSAFQ-KKLMKPVEIMKLDKKINE 149 (482)
T ss_dssp CHHHHHHHHHHTCCCCTTTCC-HHHHHHHHHHHH-HHHTCHHHHGGGHHHHHH
T ss_pred chHHHHHHHhcCCCCCceeCC-CchHHHHHHHhh-HHhcChHHHHHHHHHHHH
Confidence 32 2222333568899887 999999999999 876 77788888888877
No 12
>1r9o_A Cytochrome P450 2C9; monooxygenase, drug metabolizing enzyme, oxidoreductas; HET: HEM FLP; 2.00A {Homo sapiens} SCOP: a.104.1.1 PDB: 1og5_A* 1og2_A* 2nnj_A* 1pq2_A* 2nni_A* 2nnh_A* 2vn0_A* 1nr6_A* 1dt6_A* 1n6b_A*
Probab=99.89 E-value=9.3e-23 Score=163.57 Aligned_cols=189 Identities=24% Similarity=0.413 Sum_probs=125.6
Q ss_pred CCCCCCCCCCccccccccCCCCCchHHHHHHHHhhCCeEEEEcCCcCEEEecCHHHHHHHHHHcCccCCCCCChHHHHHh
Q 040924 8 TKLPPGPWGLPFIGTLHQLDVSKPHVLFWELSKKYGPLMSLRLGFSPSLVVSSAKMAKEILKTHDLQFCSRPALVAQQKL 87 (208)
Q Consensus 8 ~~~~pgp~~~p~~g~~~~~~~~~~~~~~~~~~~~yG~v~~~~~~~~~~v~i~dp~~~~~i~~~~~~~~~~~~~~~~~~~~ 87 (208)
.+.||||+++|++||++.+..++++..+.+++++||+|+++++++.+.|+++||+.+++|+.+++..|.+++........
T Consensus 10 ~~~pPgP~~~p~iG~~~~~~~~~~~~~~~~l~~~yG~v~~~~~g~~~~v~v~~~~~~~~il~~~~~~f~~~~~~~~~~~~ 89 (477)
T 1r9o_A 10 GKLPPGPTPLPVIGNILQIGIKDISKSLTNLSKVYGPVFTLYFGLKPIVVLHGYEAVKEALIDLGEEFSGRGIFPLAERA 89 (477)
T ss_dssp CBCCCCSSSCC-----CCBCHHHHHHHHHHHHHHHCSEEEEESSSCEEEEECSHHHHHHHHTTTTTTTCEECCCSCCCTT
T ss_pred CCCCCCCCCCceeccHhhcCCCChHHHHHHHHHHhCCEEEEEECCCcEEEECCHHHHHHHHhcccHhhCCCCcchhhhhc
Confidence 35899999999999998874466788999999999999999998888999999999999997666677665432212222
Q ss_pred hcCCcceeeCCCChHHHHHHHHHHHHhhccc--cccccccHHHH------HHHHHhcC----------------------
Q 040924 88 SYNGLDLAFSPYDEYWREIRKICAIHLFNSN--RGQNFRPIEKM------NLIHQQAS---------------------- 137 (208)
Q Consensus 88 ~~~~~~l~~~~~g~~w~~~Rk~l~~~~f~~~--~l~~~~~~~~~------~~l~~~~~---------------------- 137 (208)
..+.|+++++ |+.|+++||+++ ++|+.. .++.+.+.+.+ +.+.+..+
T Consensus 90 -~~~~~l~~~~-g~~w~~~Rr~~~-~~~~~~~~~~~~~~~~i~~~~~~l~~~l~~~~~~~vd~~~~~~~~~~~vi~~~~f 166 (477)
T 1r9o_A 90 -NRGFGIVFSN-GKKWKEIRRFSL-MTLRNFGMGKRSIEDRVQEEARCLVEELRKTKASPCDPTFILGCAPCNVICSIIF 166 (477)
T ss_dssp -TCTTSSTTCC-HHHHHHHHHHHH-HHHTTSSSCSSCHHHHHHHHHHHHHHHHHTTTTSCBCTHHHHHHHHHHHHHHHHH
T ss_pred -cCCCceEecC-ChHHHHHHHHHH-HHHHHhCCChHHHHHHHHHHHHHHHHHHHhcCCCccChHHHHHHHHHHHHHHHHc
Confidence 2356888887 999999999999 999887 44667777766 23322111
Q ss_pred -------hhHHHHHh----hh-----------cccccc-ccccccccchhhhhhhhHHHHHHHHHHHHHHhhcccccchh
Q 040924 138 -------RPLFVELV----LA-----------RGYFPF-IGWIDKLTGMLQRPQNNFQEIDRVYQELIDKHLDPNRAKIE 194 (208)
Q Consensus 138 -------~~~~~~~~----~~-----------~~~~p~-l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 194 (208)
+.++..++ .. ...+|+ ++++ +...++..++...+.+++.++|+++++..+. .
T Consensus 167 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~l---p~~~~~~~~~~~~~~~~~~~~i~~r~~~~~~--~ 241 (477)
T 1r9o_A 167 HKRFDYKDQQFLNLMEKLNENIKILSSPWIQICNNFSPIIDYF---PGTHNKLLKNVAFMKSYILEKVKEHQESMDM--N 241 (477)
T ss_dssp SCCCCTTCHHHHHHHHHHHHHHHHHTCCBC-------CCCSCC---TTCHHHHHHHHHHHHHHHHHHHHHHHHTCCT--T
T ss_pred cCcCCCCCHHHHHHHHHHHHHHHhhccchhHHHhhccHHHHhc---chHHHHHHHHHHHHHHHHHHHHHHHHhccCC--C
Confidence 11222222 00 113343 2222 2334566777888999999999998875432 2
Q ss_pred ccccccHHHhhh
Q 040924 195 QLQQEDVIDVLL 206 (208)
Q Consensus 195 ~~~~~d~l~~ll 206 (208)
.+ .|+++.|+
T Consensus 242 ~~--~d~l~~ll 251 (477)
T 1r9o_A 242 NP--QDFIDCFL 251 (477)
T ss_dssp CC--CSHHHHHH
T ss_pred Cc--hHHHHHHH
Confidence 33 68888876
No 13
>3ld6_A Lanosterol 14-alpha demethylase; cytochrome P450, ketoconazole, S genomics, structural genomics consortium, SGC; HET: HEM KKK BCD; 2.80A {Homo sapiens} PDB: 3juv_A* 3jus_A*
Probab=99.89 E-value=8.2e-23 Score=163.29 Aligned_cols=188 Identities=17% Similarity=0.289 Sum_probs=131.9
Q ss_pred CCCCCCCC-CccccccccCCCCCchHHHHHHHHhhCCeEEEEcCCcCEEEecCHHHHHHHHHHcCccCCCCCChHHHHHh
Q 040924 9 KLPPGPWG-LPFIGTLHQLDVSKPHVLFWELSKKYGPLMSLRLGFSPSLVVSSAKMAKEILKTHDLQFCSRPALVAQQKL 87 (208)
Q Consensus 9 ~~~pgp~~-~p~~g~~~~~~~~~~~~~~~~~~~~yG~v~~~~~~~~~~v~i~dp~~~~~i~~~~~~~~~~~~~~~~~~~~ 87 (208)
+.||||++ +|++||++.+ ..+++.++.+++++|||||++++++.+.|+|+||+++++|+..++..|.+++........
T Consensus 11 ~~PP~~~~~lP~iG~~~~~-~~~~~~~~~~~~~kYG~i~~~~~~~~~~vvv~~~~~i~~il~~~~~~~~~~~~~~~~~~~ 89 (461)
T 3ld6_A 11 KSPPYIFSPIPFLGHAIAF-GKSPIEFLENAYEKYGPVFSFTMVGKTFTYLLGSDAAALLFNSKNEDLNAEDVYSRLTTP 89 (461)
T ss_dssp CCCCBCCCSSTTTBTHHHH-HHCHHHHHHHHHHHHCSEEEEEETTEEEEEECSHHHHHHHHHCCTTTEESHHHHHHHHHH
T ss_pred CCCCCCCCCcCeeeeHHHh-hhCHHHHHHHHHHHhCCEEEEEECCccEEEEeCHHHHHHHHhCCccccCCCcchhhhhhc
Confidence 45677764 8999999988 678999999999999999999999999999999999999998877777655432222211
Q ss_pred hcCCcceeeCCCChHHHHHHHHHHHHhhccccccccccHHHH---HHHHHhcC---------------------------
Q 040924 88 SYNGLDLAFSPYDEYWREIRKICAIHLFNSNRGQNFRPIEKM---NLIHQQAS--------------------------- 137 (208)
Q Consensus 88 ~~~~~~l~~~~~g~~w~~~Rk~l~~~~f~~~~l~~~~~~~~~---~~l~~~~~--------------------------- 137 (208)
..|.|++++.+|+.|+++|++++ ++|+...++.+.+.+.+ +.++.+..
T Consensus 90 -~~g~~~~~~~~~~~~~~~R~~~~-~~f~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fG~~~ 167 (461)
T 3ld6_A 90 -VFGKGVAYDVPNPVFLEQKKMLK-SGLNIAHFKQHVSIIEKETKEYFESWGESGEKNVFEALSELIILTASHCLHGKEI 167 (461)
T ss_dssp -HHCTTSGGGSCHHHHHHHHHHHH-HHSSHHHHHHHHHHHHHHHHHHGGGGCSEEEEEHHHHHHHHHHHHHHHHHTCHHH
T ss_pred -cCCCccccCCCcHHHHHHHHhcc-ccccHHHHhhhhHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHHHHHcCcch
Confidence 13567766555999999999999 99999999999888887 33333321
Q ss_pred ----hhHHHHHh-hhcccc---cc--ccccccccchhhhhhhhHHHHHHHHHHHHHHhhcccccchhccccccHHHhhhc
Q 040924 138 ----RPLFVELV-LARGYF---PF--IGWIDKLTGMLQRPQNNFQEIDRVYQELIDKHLDPNRAKIEQLQQEDVIDVLLQ 207 (208)
Q Consensus 138 ----~~~~~~~~-~~~~~~---p~--l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~l~~ll~ 207 (208)
.+.+.... .....+ .+ ..+++ .+...+..++.+.+.+++.+.|+++++..+ .. .|+++.|++
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~i~~r~~~~~----~~--~d~l~~ll~ 239 (461)
T 3ld6_A 168 RSQLNEKVAQLYADLDGGFSHAAWLLPGWLP--LPSFRRRDRAHREIKDIFYKAIQKRRQSQE----KI--DDILQTLLD 239 (461)
T ss_dssp HHTCCHHHHHHHHHHHTTSSHHHHHSCTTSC--CHHHHHHHHHHHHHHHHHHHHHHHHTTCCC----CC--CSHHHHHHT
T ss_pred hhhhhhhhhhhhhhhhhhhhhHHHhhhhhcc--CcHHHHHHHHHHHHHHHHHHHHHHHHhcCC----CC--cchhhhhHH
Confidence 01111111 000111 11 01122 134556777888899999999988876532 23 688888775
No 14
>3s79_A Cytochrome P450 19A1; oxidoreductase; HET: HEM ASD; 2.75A {Homo sapiens} PDB: 3eqm_A* 3s7s_A* 4gl5_A* 4gl7_A*
Probab=99.88 E-value=1e-22 Score=164.20 Aligned_cols=199 Identities=15% Similarity=0.130 Sum_probs=131.3
Q ss_pred CCCCCCCCCCCCCCccccccccCCC---CCchHHHHHHHHhhCCeEEEEcCCcCEEEecCHHHHHHHHHHcCccCCCCCC
Q 040924 4 SRNNTKLPPGPWGLPFIGTLHQLDV---SKPHVLFWELSKKYGPLMSLRLGFSPSLVVSSAKMAKEILKTHDLQFCSRPA 80 (208)
Q Consensus 4 ~~~~~~~~pgp~~~p~~g~~~~~~~---~~~~~~~~~~~~~yG~v~~~~~~~~~~v~i~dp~~~~~i~~~~~~~~~~~~~ 80 (208)
.+++.+.||||+++|++||++.+.. ...+..+.+|+++||+|+++++|+.+.|+++||+++++|+.. +.|.+++.
T Consensus 40 ~~~~~~~pPGP~~~P~iGnl~~~~~~~~~~~~~~~~~~~~~yG~v~~~~~g~~~~vvv~~p~~~~~il~~--~~~~~r~~ 117 (503)
T 3s79_A 40 NYEGTSSIPGPGYCMGIGPLISHGRFLWMGIGSACNYYNRVYGEFMRVWISGEETLIISKSSSMFHIMKH--NHYSSRFG 117 (503)
T ss_dssp -----CCCCSCCCCSSSHHHHHHHHHHHHCHHHHHHHHHHHSCSEEEEESSSSEEEEECCHHHHHHHHHS--GGGCCCCC
T ss_pred HHhccCCCCCCCCCceeeehhccccccccchhHHHHHHHHHhCCeEEEEeCCccEEEECCHHHHHHHHhc--CCCCCcch
Confidence 4456789999999999999988722 234568889999999999999999999999999999999953 35666654
Q ss_pred hHH-HHHhhcCCcceeeCCCChHHHHHHHHHHHHhhccccccccccHHHH---HHHHHhc-----C--------------
Q 040924 81 LVA-QQKLSYNGLDLAFSPYDEYWREIRKICAIHLFNSNRGQNFRPIEKM---NLIHQQA-----S-------------- 137 (208)
Q Consensus 81 ~~~-~~~~~~~~~~l~~~~~g~~w~~~Rk~l~~~~f~~~~l~~~~~~~~~---~~l~~~~-----~-------------- 137 (208)
... .......+.|++++.+|+.|+++|++++ ++|+...++.+.+.+.+ +.++... +
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~g~~w~~~Rr~~~-~~f~~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~vdl~~~~~~~~~ 196 (503)
T 3s79_A 118 SKLGLQCIGMHEKGIIFNNNPELWKTTRPFFM-KALSGPGLVRMVTVCAESLKTHLDRLEEVTNESGYVDVLTLLRRVML 196 (503)
T ss_dssp CHHHHHHHTCTTSSSTTCCCHHHHHHHHHHHH-HHTSTHHHHHHHHHHHHHHHHHHTTGGGTBCTTSCBCHHHHHHHHHH
T ss_pred hhhhhhhhccCCCceeeCCCccHHHHHHHhhh-HhhChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEcHHHHHHHHHH
Confidence 332 2323334678776666999999999999 99999999988887776 3333221 1
Q ss_pred -------------hhHHHHHh-----hh--ccccccccccccccchhhhhhhhHHHHHHHHHHHHHHhhcccccchhccc
Q 040924 138 -------------RPLFVELV-----LA--RGYFPFIGWIDKLTGMLQRPQNNFQEIDRVYQELIDKHLDPNRAKIEQLQ 197 (208)
Q Consensus 138 -------------~~~~~~~~-----~~--~~~~p~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 197 (208)
+.++...+ .. ....|.+ +..++...++..++.+.+.+++.++|+++++..+.+....+
T Consensus 197 ~vi~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 274 (503)
T 3s79_A 197 DTSNTLFLRIPLDESAIVVKIQGYFDAWQALLIKPDI--FFKISWLYKKYEKSVKDLKDAIEVLIAEKRRRISTEEKLEE 274 (503)
T ss_dssp HHHHHHHTCCCCCHHHHHHHHHHHHHHHHHHTTCCHH--HHHSGGGTHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTTTT
T ss_pred HHHHHHHcCcccCchhHHHHHHHHHHHHHHHhcCcHH--HhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccch
Confidence 11111111 00 0000100 01112334667778888999999999988876542111111
Q ss_pred cccHHHhhhc
Q 040924 198 QEDVIDVLLQ 207 (208)
Q Consensus 198 ~~d~l~~ll~ 207 (208)
..|+++.|++
T Consensus 275 ~~d~l~~ll~ 284 (503)
T 3s79_A 275 CMDFATELIL 284 (503)
T ss_dssp TCCHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 1589998874
No 15
>3nxu_A Cytochrome P450 3A4; alpha beta protein, cytochrome P450 fold, hemoprotein, monoo cytochrome P450 reductase, endoplasmic reticulum; HET: HEM RIT; 2.00A {Homo sapiens} SCOP: a.104.1.1 PDB: 1w0e_A* 1w0g_A* 2j0d_A* 2v0m_A* 1w0f_A* 1tqn_A* 3ua1_A* 3tjs_A*
Probab=99.88 E-value=7.5e-23 Score=164.28 Aligned_cols=116 Identities=24% Similarity=0.389 Sum_probs=99.0
Q ss_pred CCCCCCCCCCccccccccCCCCCchHHHHHHHHhhCCeEEEEcCCcCEEEecCHHHHHHHHHHc-CccCCCCCChHHHHH
Q 040924 8 TKLPPGPWGLPFIGTLHQLDVSKPHVLFWELSKKYGPLMSLRLGFSPSLVVSSAKMAKEILKTH-DLQFCSRPALVAQQK 86 (208)
Q Consensus 8 ~~~~pgp~~~p~~g~~~~~~~~~~~~~~~~~~~~yG~v~~~~~~~~~~v~i~dp~~~~~i~~~~-~~~~~~~~~~~~~~~ 86 (208)
.+.+|||+++|++||++.+ ..+++..+.+|+++||+|+++++|+.++|+|+||+++++||.++ .+.|..++......
T Consensus 13 ~~~~PGP~~~PliGn~~~~-~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvv~dp~~i~~il~~~~~~~f~~r~~~~~~~- 90 (485)
T 3nxu_A 13 KLGIPGPTPLPFLGNILSY-HKGFCMFDMECHKKYGKVWGFYDGQQPVLAITDPDMIKTVLVKECYSVFTNRRPFGPVG- 90 (485)
T ss_dssp HHTCCCCCCBTTTBTGGGG-GGCHHHHHHHHHHHHCSEEEEEETTEEEEEECCHHHHHHHHTTTTTTTCCCCCCCSCCG-
T ss_pred hCCCCCCCCcCeecCcHHh-hcChHHHHHHHHHHcCCeEEEEeCCCCEEEECCHHHHHHHHhccchhhccCCccccccc-
Confidence 3568999999999999988 66788899999999999999999999999999999999999876 55676665432222
Q ss_pred hhcCCcceeeCCCChHHHHHHHHHHHHhhccccccccccHHHH
Q 040924 87 LSYNGLDLAFSPYDEYWREIRKICAIHLFNSNRGQNFRPIEKM 129 (208)
Q Consensus 87 ~~~~~~~l~~~~~g~~w~~~Rk~l~~~~f~~~~l~~~~~~~~~ 129 (208)
..+.|+++++ |+.|+++|++++ ++|+.+.++.+.+.+.+
T Consensus 91 --~~~~~l~~~~-g~~w~~~R~~~~-~~fs~~~l~~~~~~i~~ 129 (485)
T 3nxu_A 91 --FMKSAISIAE-DEEWKRLRSLLS-PTFTSGKLKEMVPIIAQ 129 (485)
T ss_dssp --GGGGSTTTCC-HHHHHHHHHHHG-GGGCHHHHHHHHHHHHH
T ss_pred --ccccCccccC-CcHHHHHHhhcC-hhcCHHHHHHHHHHHHH
Confidence 1256788887 999999999999 99999999999998887
No 16
>3i3k_A Lanosterol 14-alpha demethylase; cytochrome P450, hemeprotein, alternative splicing, cholesterol biosynthesis, endoplasmic reticulum, heme, iron; HET: HEM KLN BCD; 2.80A {Homo sapiens} PDB: 3jus_A* 3juv_A* 3ld6_A*
Probab=99.86 E-value=9.2e-22 Score=157.11 Aligned_cols=188 Identities=16% Similarity=0.268 Sum_probs=132.0
Q ss_pred CCCCCCCC-CCCCccccccccCCCCCchHHHHHHHHhhCCeEEEEcCCcCEEEecCHHHHHHHHHHcCccCCCCCChH-H
Q 040924 6 NNTKLPPG-PWGLPFIGTLHQLDVSKPHVLFWELSKKYGPLMSLRLGFSPSLVVSSAKMAKEILKTHDLQFCSRPALV-A 83 (208)
Q Consensus 6 ~~~~~~pg-p~~~p~~g~~~~~~~~~~~~~~~~~~~~yG~v~~~~~~~~~~v~i~dp~~~~~i~~~~~~~~~~~~~~~-~ 83 (208)
++.+.||| |+++|++||++.+ ..+++..+.+++++||+|+++++++.+.|++++|+.+++++.++...+..++... .
T Consensus 8 ~~~~~PPg~P~~lP~iG~l~~~-~~~~~~~~~~~~~~yG~v~~l~l~g~~~vvv~~~~~~~~il~~~~~~~~~~~~~~~~ 86 (461)
T 3i3k_A 8 AGVKSPPYIFSPIPFLGHAIAF-GKSPIEFLENAYEKYGPVFSFTMVGKTFTYLLGSDAAALLFNSKNEDLNAEDVYSRL 86 (461)
T ss_dssp --CCCCCBCCCSSTTTBTHHHH-HHCHHHHHHHHHHHHCSEEEEEETTEEEEEECSHHHHHHHHHCCTTTEESHHHHHHH
T ss_pred CCCCCCCCCCCCCCccccHHhh-ccCHHHHHHHHHHHhCCEEEEEecCceEEEEeChHHHHHHHhccccccccchHHHHh
Confidence 45678999 8899999999888 5788999999999999999999999999999999999999987665554332111 1
Q ss_pred HHHhhcCCcceeeCCCChHHHHHHHHHHHHhhccccccccccHHHH---HHHHHhcC-----------------------
Q 040924 84 QQKLSYNGLDLAFSPYDEYWREIRKICAIHLFNSNRGQNFRPIEKM---NLIHQQAS----------------------- 137 (208)
Q Consensus 84 ~~~~~~~~~~l~~~~~g~~w~~~Rk~l~~~~f~~~~l~~~~~~~~~---~~l~~~~~----------------------- 137 (208)
...+ .|.|++++.+|+.|+++|++++ ++|+...++.+.+.+.+ +.++.+..
T Consensus 87 ~~~~--~g~g~~~~~~g~~w~~~Rr~~~-~~f~~~~l~~~~~~~~~~~~~ll~~l~~~~~~dl~~~~~~~~~~~~~~~~~ 163 (461)
T 3i3k_A 87 TTPV--FGKGVAYDVPNPVFLEQKKMLK-SGLNIAHFKQHVSIIEKETKEYFESWGESGEKNVFEALSELIILTASHCLH 163 (461)
T ss_dssp HHHH--HCTTSGGGSCHHHHHHHHHHHH-HHSSHHHHHHHHHHHHHHHHHHGGGGCSEEEEEHHHHHHHHHHHHHHHHHT
T ss_pred hhhh--cCCeeeeCCCcHHHHHHHHHHh-hhhCHHHHHHHHHHHHHHHHHHHHHhhhcCCcCHHHHHHHHHHHHHHHHHc
Confidence 1112 3677877755999999999999 99999999999888877 33333321
Q ss_pred hhH--------HHHHh-hhc-------cccccccccccccchhhhhhhhHHHHHHHHHHHHHHhhcccccchhccccccH
Q 040924 138 RPL--------FVELV-LAR-------GYFPFIGWIDKLTGMLQRPQNNFQEIDRVYQELIDKHLDPNRAKIEQLQQEDV 201 (208)
Q Consensus 138 ~~~--------~~~~~-~~~-------~~~p~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~ 201 (208)
+.+ +.+.+ ... ..+| .+++ .+..++..++...+.+++.++|+++++..+ .. .|+
T Consensus 164 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P--~~l~--~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----~~--~d~ 233 (461)
T 3i3k_A 164 GKEIRSQLNEKVAQLYADLDGGFSHAAWLLP--GWLP--LPSFRRRDRAHREIKDIFYKAIQKRRQSQE----KI--DDI 233 (461)
T ss_dssp CHHHHHTCCHHHHHHHHHHHTTSSHHHHHSC--TTSC--CHHHHHHHHHHHHHHHHHHHHHHHHTTCCC----CC--CSH
T ss_pred cHhhhhHHHHHHHHHHHHHHhccccchhhcc--cccC--CHHHHHHHHHHHHHHHHHHHHHHHHHhccc----cc--ccH
Confidence 011 11111 000 0111 1222 133566777888899999999998876532 22 688
Q ss_pred HHhhhc
Q 040924 202 IDVLLQ 207 (208)
Q Consensus 202 l~~ll~ 207 (208)
++.|++
T Consensus 234 l~~ll~ 239 (461)
T 3i3k_A 234 LQTLLD 239 (461)
T ss_dssp HHHHHT
T ss_pred HHHHHH
Confidence 888764
No 17
>2ij2_A Cytochrome P450 BM3; monoxygenase, heme binding protein, atomic resolution, oxidoreductase; HET: HEM; 1.20A {Bacillus megaterium} SCOP: a.104.1.1 PDB: 2hpd_A* 1fag_A* 1jpz_A* 1zo9_A* 1zo4_A* 1zoa_A* 3m4v_A* 3ekb_A* 3ben_A* 1fah_A* 2nnb_A* 3kx3_A* 3ekd_A* 3ekf_A* 1smi_A* 1smj_A* 3kx4_A* 2ij3_A* 2ij4_A* 3hf2_A* ...
Probab=99.85 E-value=2.5e-20 Score=149.27 Aligned_cols=118 Identities=17% Similarity=0.232 Sum_probs=94.1
Q ss_pred CCCCCCCCCCccccccccCCCCCchHHHHHHHHhhCCeEEEEcCCcCEEEecCHHHHHHHHHHcCccCCCCCChHHHHHh
Q 040924 8 TKLPPGPWGLPFIGTLHQLDVSKPHVLFWELSKKYGPLMSLRLGFSPSLVVSSAKMAKEILKTHDLQFCSRPALVAQQKL 87 (208)
Q Consensus 8 ~~~~pgp~~~p~~g~~~~~~~~~~~~~~~~~~~~yG~v~~~~~~~~~~v~i~dp~~~~~i~~~~~~~~~~~~~~~~~~~~ 87 (208)
.+.+|||+++|++||++.+..++++..+.+++++||||+++++++.+.|+|+||+++++|+.+ ..|.+... .....+
T Consensus 2 ~~~~PGP~~~p~iG~l~~~~~~~~~~~~~~~~~~yG~v~~~~~~~~~~v~v~~~~~~~~il~~--~~f~~~~~-~~~~~~ 78 (470)
T 2ij2_A 2 IKEMPQPKTFGELKNLPLLNTDKPVQALMKIADELGEIFKFEAPGRVTRYLSSQRLIKEACDE--SRFDKNLS-QALKFV 78 (470)
T ss_dssp -CCCCCCCCCGGGTTGGGGCSSCHHHHHHHHHHHHCSEEEEEETTEEEEEECCHHHHHHHTCT--TTEEECCC-HHHHHH
T ss_pred CCCCCCCCCCCccccHHHHhcccchHHHHHHHHHhCCeEEEecCCccEEEECCHHHHHHHHhh--cCcCcCch-hHHHHH
Confidence 356899999999999998855678889999999999999999999999999999999999953 23532222 212111
Q ss_pred -hcCCcceeeC-CCChHHHHHHHHHHHHhhccccccccccHHHH
Q 040924 88 -SYNGLDLAFS-PYDEYWREIRKICAIHLFNSNRGQNFRPIEKM 129 (208)
Q Consensus 88 -~~~~~~l~~~-~~g~~w~~~Rk~l~~~~f~~~~l~~~~~~~~~ 129 (208)
...+.|++++ .+|+.|+++||+++ ++|+.+.++.+.+.+.+
T Consensus 79 ~~~~~~~l~~~~~~g~~w~~~Rr~~~-~~fs~~~l~~~~~~i~~ 121 (470)
T 2ij2_A 79 RDFAGDGLFTSWTHEKNWKKAHNILL-PSFSQQAMKGYHAMMVD 121 (470)
T ss_dssp HHHHTTSGGGSCTTSHHHHHHHHHHG-GGGSTTTHHHHHHHHHH
T ss_pred HHhcCCceEEcCCCchHHHHHHHHhc-cccCHHHHHHHHHHHHH
Confidence 1125678877 34999999999999 99999999999998887
No 18
>2cib_A Cytochrome P450 51; heme, heme lipid synthesis, metal-binding, monooxygenase, NADP, oxidoreductase, protein-inhibitor complex; HET: HEM CM6; 1.50A {Mycobacterium tuberculosis} SCOP: a.104.1.1 PDB: 2bz9_A* 1x8v_A* 2ci0_A* 2vku_A* 2w09_A* 2w0b_A* 2w0a_A* 1h5z_A* 1ea1_A* 1e9x_A* 1u13_A*
Probab=99.83 E-value=3e-20 Score=148.23 Aligned_cols=190 Identities=12% Similarity=0.106 Sum_probs=111.6
Q ss_pred CCCCC-CCCCccccccccCCCCCchHHHHHHHHhhCCeEEEEcCCcCEEEecCHHHHHHHHHHcCccCCCCCChHHHHHh
Q 040924 9 KLPPG-PWGLPFIGTLHQLDVSKPHVLFWELSKKYGPLMSLRLGFSPSLVVSSAKMAKEILKTHDLQFCSRPALVAQQKL 87 (208)
Q Consensus 9 ~~~pg-p~~~p~~g~~~~~~~~~~~~~~~~~~~~yG~v~~~~~~~~~~v~i~dp~~~~~i~~~~~~~~~~~~~~~~~~~~ 87 (208)
+.||| |.++|++||+..+ ..+++..+.+++++||+|+++++++.++++++||+.+++|+..++..|.+++........
T Consensus 4 ~~PPg~p~~~P~iG~~~~~-~~~~~~~~~~l~~~yG~v~~~~~~~~~~~vv~~~~~~~~il~~~~~~~~~~~~~~~~~~~ 82 (455)
T 2cib_A 4 VALPRVSGGHDEHGHLEEF-RTDPIGLMQRVRDELGDVGTFQLAGKQVVLLSGSHANEFFFRAGDDDLDQAKAYPFMTPI 82 (455)
T ss_dssp -CCCBCSCCCBTTBTHHHH-TTCHHHHHHHHHHHHCSEEEEEETTEEEEEECSHHHHHHHHHCCTTTEECTTSCGGGHHH
T ss_pred CCCCCCCCCCCCccCHHHH-hhChHHHHHHHHHHcCCEEEEEeCCceEEEECCHHHHHHHHhcCccccCcccchhHHHhh
Confidence 67898 7789999999887 678899999999999999999999888999999999999997665566655533222222
Q ss_pred hcCCcceeeCCCChHHHHHHHHHHHHhhccccccccccHHHH---HHHHHhcC---------------------------
Q 040924 88 SYNGLDLAFSPYDEYWREIRKICAIHLFNSNRGQNFRPIEKM---NLIHQQAS--------------------------- 137 (208)
Q Consensus 88 ~~~~~~l~~~~~g~~w~~~Rk~l~~~~f~~~~l~~~~~~~~~---~~l~~~~~--------------------------- 137 (208)
. |.+++ .+ |+.|+++|++++ ++|+.+.++.+.+.+.+ +.++.+..
T Consensus 83 ~--g~~~~-~~-~~~~~~~R~~~~-~~f~~~~l~~~~~~i~~~~~~l~~~~~~~~~vd~~~~~~~~~~~vi~~~~fG~~~ 157 (455)
T 2cib_A 83 F--GEGVV-FD-ASPERRKEMLHN-AALRGEQMKGHAATIEDQVRRMIADWGEAGEIDLLDFFAELTIYTSSACLIGKKF 157 (455)
T ss_dssp H--C-----------------------CCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEHHHHHHHHHHHHHHHHHTCHHH
T ss_pred c--CCccc-cC-cHHHHHHHhhhc-cccCHHHHHHHHHHHHHHHHHHHHHhCCCCcEeHHHHHHHHHHHHHHHHHcCCCc
Confidence 2 34554 56 999999999999 99999999999888887 33333221
Q ss_pred ----hhHHHHHh-hhcc-cccccccccccc-chhhhhhhhHHHHHHHHHHHHHHhhcccccchhccccccHHHhhhc
Q 040924 138 ----RPLFVELV-LARG-YFPFIGWIDKLT-GMLQRPQNNFQEIDRVYQELIDKHLDPNRAKIEQLQQEDVIDVLLQ 207 (208)
Q Consensus 138 ----~~~~~~~~-~~~~-~~p~l~~l~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~l~~ll~ 207 (208)
+.++.+.+ .... ..+....+++++ +..++..++...+.+++.++|+++++.... .... +|+++.|++
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~i~~r~~~~~~-~~~~--~dll~~ll~ 231 (455)
T 2cib_A 158 RDQLDGRFAKLYHELERGTDPLAYVDPYLPIESFRRRDEARNGLVALVADIMNGRIANPPT-DKSD--RDMLDVLIA 231 (455)
T ss_dssp HTTCCHHHHHHHHHHHTTCCGGGGTCTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHCC------C--CCHHHHHHH
T ss_pred chhhhHHHHHHHHHHHhhhhHHHHhcccCCChhHHHHHHHHHHHHHHHHHHHHHHHhcccC-CCCc--ccHHHHHHH
Confidence 01222222 0000 111111112111 224456677788899999999988765432 1122 499998875
No 19
>3n9y_A Cholesterol SIDE-chain cleavage enzyme; cytochrome P450, cholesterol SIDE chain cleavage, structural genomics, structural genomics consortium, SGC; HET: HEM CLR; 2.10A {Homo sapiens} PDB: 3n9z_A* 3na1_A* 3na0_A* 3mzs_A*
Probab=99.83 E-value=2.5e-20 Score=149.70 Aligned_cols=123 Identities=17% Similarity=0.210 Sum_probs=98.0
Q ss_pred CCCCCCCCCCCCCCCccccccccCCC----CCchHHHHHHHHhhCCeEEEEcCCcCEEEecCHHHHHHHHHHcCccCCCC
Q 040924 3 TSRNNTKLPPGPWGLPFIGTLHQLDV----SKPHVLFWELSKKYGPLMSLRLGFSPSLVVSSAKMAKEILKTHDLQFCSR 78 (208)
Q Consensus 3 ~~~~~~~~~pgp~~~p~~g~~~~~~~----~~~~~~~~~~~~~yG~v~~~~~~~~~~v~i~dp~~~~~i~~~~~~~~~~~ 78 (208)
+..++.+.+|||++.++. +++.+.. +.++..+.+++++||||+++++|+.+.|+|+||+++++||.++ +.|.++
T Consensus 3 r~~~pL~~~PGP~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~kYG~i~~~~~g~~~~vvv~dp~~~~~il~~~-~~f~~r 80 (487)
T 3n9y_A 3 RSPRPFNEIPSPGDNGWL-NLYHFWRETGTHKVHLHHVQNFQKYGPIYREKLGNVESVYVIDPEDVALLFKSE-GPNPER 80 (487)
T ss_dssp -CCBCGGGSCCSCSCHHH-HHHHHHHHTCGGGHHHHHHHHHHHHCSEEEEEETTEEEEEECCHHHHHHHHHTC-CSSCCC
T ss_pred CCCCCHhhCCCCCCCChh-hHHHHHhcCCCcchhHHHHHHHHHcCceeeccCCCCCEEEEcCHHHHHHHHHhC-CCCCCC
Confidence 356677889999987765 6655522 3678899999999999999999999999999999999999765 467777
Q ss_pred CChHH---HHHhhcCCcceeeCCCChHHHHHHHHHHHH-hhccccccccccHHHH
Q 040924 79 PALVA---QQKLSYNGLDLAFSPYDEYWREIRKICAIH-LFNSNRGQNFRPIEKM 129 (208)
Q Consensus 79 ~~~~~---~~~~~~~~~~l~~~~~g~~w~~~Rk~l~~~-~f~~~~l~~~~~~~~~ 129 (208)
+.... .......+.|+++++ |+.|+++|++++ + +|+.+.++.+.+.+++
T Consensus 81 ~~~~~~~~~~~~~~~~~~l~~~~-g~~w~~~Rr~l~-~~~fs~~~l~~~~~~i~~ 133 (487)
T 3n9y_A 81 FLIPPWVAYHQYYQRPIGVLLKK-SAAWKKDRVALN-QEVMAPEATKNFLPLLDA 133 (487)
T ss_dssp CCCHHHHHHHHHTTCCCCGGGCC-HHHHHHHHHHHH-HHHTSHHHHTTHHHHHHH
T ss_pred CCCcHHHHHHHHccccCCCccCC-cHHHHHHHHhcC-cccCCchHHHHhhhHHHH
Confidence 64332 222233467888887 999999999999 7 5999999999998887
No 20
>3dbg_A Putative cytochrome P450; cytochrome P450 oxidoreductase, CYP170A1, molecular mechanism, heme, iron, metal-binding, monooxygenase; HET: HEM; 2.60A {Streptomyces coelicolor A3} PDB: 3el3_A*
Probab=99.83 E-value=1.1e-20 Score=151.20 Aligned_cols=185 Identities=15% Similarity=0.235 Sum_probs=107.2
Q ss_pred CCCCCCCCCCccccccccCCCCCchHHHHHHHHhhCCeEEEEcCCcCEEEecCHHHHHHHHHHcCccCCCCC-ChHHHHH
Q 040924 8 TKLPPGPWGLPFIGTLHQLDVSKPHVLFWELSKKYGPLMSLRLGFSPSLVVSSAKMAKEILKTHDLQFCSRP-ALVAQQK 86 (208)
Q Consensus 8 ~~~~pgp~~~p~~g~~~~~~~~~~~~~~~~~~~~yG~v~~~~~~~~~~v~i~dp~~~~~i~~~~~~~~~~~~-~~~~~~~ 86 (208)
...||||+++|++||++.+ ..+++..+.++++ ||||+++++++.+.++|+||+.+++|+.++ .|..++ .......
T Consensus 22 ~eppPgP~~~P~iG~~~~~-~~~p~~~~~~l~~-yGpv~~~~~g~~~~~vv~~~~~i~~il~~~--~~~~~~~~~~~~~~ 97 (467)
T 3dbg_A 22 REPPVAGGGVPLLGHGWRL-ARDPLAFMSQLRD-HGDVVRIKLGPKTVYAVTNPELTGALALNP--DYHIAGPLWESLEG 97 (467)
T ss_dssp CBCCEECCCCSTTHHHHHH-HHCHHHHHHHHGG-GCSEEEEEETTEEEEEECSHHHHHHHHHCT--TC------------
T ss_pred CCCCCCCCCCCcccchHHh-ccCHHHHHHHHHH-hCCEEEEEeCCccEEEECCHHHHHHHHhCc--CcccccchHHHHHH
Confidence 4458999999999999988 5788889989888 999999999999999999999999999765 553232 2222222
Q ss_pred hhcCCcceeeCCCChHHHHHHHHHHHHhhccccccccccHHHH---HHHHHhc-C-------------------------
Q 040924 87 LSYNGLDLAFSPYDEYWREIRKICAIHLFNSNRGQNFRPIEKM---NLIHQQA-S------------------------- 137 (208)
Q Consensus 87 ~~~~~~~l~~~~~g~~w~~~Rk~l~~~~f~~~~l~~~~~~~~~---~~l~~~~-~------------------------- 137 (208)
.. +..|+++++ |+.|+++|++++ ++|+.+.++.+.+.+.+ +.++.+. +
T Consensus 98 ~~-g~~~l~~~d-g~~h~~~R~~l~-~~fs~~~l~~~~~~i~~~~~~l~~~l~~~~~~d~~~~~~~~~~~vi~~~~~g~~ 174 (467)
T 3dbg_A 98 LL-GKEGVATAN-GPLHRRQRRTIQ-PAFRLDAIPAYGPIMEEEAHALTERWQPGKTVDATSESFRVAVRVAARCLLRGQ 174 (467)
T ss_dssp --------------------CGGGH-HHHSTTTSTTTHHHHHHHHHHHHHHSCTTSCEEHHHHHHHHHHHHHHHHHSCSS
T ss_pred hc-CCCCcccCC-cHHHHHHHHHhh-hhhCHHHHHHHHHHHHHHHHHHHHHhccCCcCcHHHHHHHHHHHHHHHHHhCCc
Confidence 21 227888887 999999999999 99999999999998887 3344432 1
Q ss_pred -hh----HHHHHh-------hhcccccc--ccccccccchhhhhhhhHHHHHHHHHHHHHHhhcccccchhccccccHHH
Q 040924 138 -RP----LFVELV-------LARGYFPF--IGWIDKLTGMLQRPQNNFQEIDRVYQELIDKHLDPNRAKIEQLQQEDVID 203 (208)
Q Consensus 138 -~~----~~~~~~-------~~~~~~p~--l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~l~ 203 (208)
+. .+...+ ....++|+ +.+++ .+..++..++...+.+++.++|+++++.. ... .|+++
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~~r~~~~----~~~--~dll~ 246 (467)
T 3dbg_A 175 YMDERAERLCVALATVFRGMYRRMVVPLGPLYRLP--LPANRRFNDALADLHLLVDEIIAERRASG----QKP--DDLLT 246 (467)
T ss_dssp CCHHHHHHHHHHHHHHHHC--------------------------CCHHHHHHHHHHHHHHHTTCC----SSC--CSHHH
T ss_pred ccchhHHHHHHHHHHHHHHHHHHhccchhhhhhCC--ChHhHHHHHHHHHHHHHHHHHHHHHHhcC----CCc--hHHHH
Confidence 00 111111 11112232 12222 13356677888899999999999887753 223 68888
Q ss_pred hhhc
Q 040924 204 VLLQ 207 (208)
Q Consensus 204 ~ll~ 207 (208)
.|++
T Consensus 247 ~ll~ 250 (467)
T 3dbg_A 247 ALLE 250 (467)
T ss_dssp HHTT
T ss_pred HHHh
Confidence 8875
No 21
>2ve3_A Putative cytochrome P450 120; oxidoreductase, monooxygenase, metal-binding, heme, iron; HET: HEM REA; 2.10A {Synechocystis SP} PDB: 2ve4_A*
Probab=99.82 E-value=5.3e-20 Score=146.39 Aligned_cols=189 Identities=19% Similarity=0.269 Sum_probs=128.0
Q ss_pred CCCCCCCCCCCCCccccccccCCCCCchHHHHHHHHhhCCeEEEEcCCcCEEEecCHHHHHHHHHHcCccCCCCCChHHH
Q 040924 5 RNNTKLPPGPWGLPFIGTLHQLDVSKPHVLFWELSKKYGPLMSLRLGFSPSLVVSSAKMAKEILKTHDLQFCSRPALVAQ 84 (208)
Q Consensus 5 ~~~~~~~pgp~~~p~~g~~~~~~~~~~~~~~~~~~~~yG~v~~~~~~~~~~v~i~dp~~~~~i~~~~~~~~~~~~~~~~~ 84 (208)
.++.+.||||+++|++||++.+ ..+++ .+.+++++||+++++++++.+.|+++||+.+++|+.+++..|..+.. ...
T Consensus 8 ~~~~~~pPgp~~~P~iG~~~~~-~~~~~-~~~~~~~~yg~v~~~~~~g~~~vvv~~~~~~~~il~~~~~~~~~~~~-~~~ 84 (444)
T 2ve3_A 8 LNSLPIPPGDFGLPWLGETLNF-LNDGD-FGKKRQQQFGPIFKTRLFGKNVIFISGALANRFLFTKEQETFQATWP-LST 84 (444)
T ss_dssp -CCCCCCCCCCCBTTTBTHHHH-HHCTT-HHHHHHHHHCSSEEEEETTEEEEEECSHHHHHHHTSSCTTTEEEECC-HHH
T ss_pred CCCCCCCCCCCCCCccccHHHH-hcCcH-HHHHHHHHcCCeEEEeeCCCCEEEEcCHHHHHHHHhCCCcccccchh-HHH
Confidence 4567789999999999999877 34556 77899999999999998888899999999999999766555643222 222
Q ss_pred HHhhcCCcceeeCCCChHHHHHHHHHHHHhhccccccccccHHHH---HHHHHhc-C-----hhHHHHHh------hhcc
Q 040924 85 QKLSYNGLDLAFSPYDEYWREIRKICAIHLFNSNRGQNFRPIEKM---NLIHQQA-S-----RPLFVELV------LARG 149 (208)
Q Consensus 85 ~~~~~~~~~l~~~~~g~~w~~~Rk~l~~~~f~~~~l~~~~~~~~~---~~l~~~~-~-----~~~~~~~~------~~~~ 149 (208)
..+. +..|+++++ |+.|+++|++++ ++|+.+.++.+.+.+.+ +.++.+. + .+.+..+. ..+.
T Consensus 85 ~~~~-g~~~l~~~~-g~~~~~~R~~~~-~~f~~~~l~~~~~~i~~~~~~l~~~l~~~~~vd~~~~~~~~~~~vi~~~~fG 161 (444)
T 2ve3_A 85 RILL-GPNALATQM-GEIHRSRRKILY-QAFLPRTLDSYLPKMDGIVQGYLEQWGKANEVIWYPQLRRMTFDVAATLFMG 161 (444)
T ss_dssp HHHH-CTTSGGGCC-HHHHHHHHHHHH-GGGCHHHHHTTHHHHHHHHHHHHHHHHHSSEEEHHHHHHHHHHHHHHHHHTC
T ss_pred HHHh-CccccccCC-chHHHHHHHHHH-hhcCHHHHHHHHHHHHHHHHHHHHHhcCCCcEeHHHHHHHHHHHHHHHHHcC
Confidence 2222 234788887 999999999999 99999999999998887 3333332 1 11111111 0000
Q ss_pred -------------------ccccccccccccchhhhhhhhHHHHHHHHHHHHHHhhcccccchhccccccHHHhhhc
Q 040924 150 -------------------YFPFIGWIDKLTGMLQRPQNNFQEIDRVYQELIDKHLDPNRAKIEQLQQEDVIDVLLQ 207 (208)
Q Consensus 150 -------------------~~p~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~l~~ll~ 207 (208)
.+.....++. ...++..++...+.+++.++|+++++.. ... .|+++.|++
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~--~~~~~~~~~~~~~~~~~~~~i~~r~~~~----~~~--~d~l~~ll~ 230 (444)
T 2ve3_A 162 EKVSQNPQLFPWFETYIQGLFSLPIPLPN--TLFGKSQRARALLLAELEKIIKARQQQP----PSE--EDALGILLA 230 (444)
T ss_dssp HHHHSCTTHHHHHHHHHHHHSSCCCCSTT--SHHHHHHHHHHHHHHHHHHHHHHHHTSC----CCC--SSHHHHHHH
T ss_pred CCcccHHHHHHHHHHHHHHHhcCCccCCC--cHHHHHHHHHHHHHHHHHHHHHHHhcCC----CCc--cCHHHHHHh
Confidence 0000001111 1234566777888999999999887652 123 688888774
No 22
>2cd8_A Cytochrome P450 monooxygenase; oxidoreductase, PIKC, macrolide monooxygenase, antibiotic biosynthesis, heme, iron, metal-binding; HET: HEM PXI; 1.7A {Streptomyces venezuelae} PDB: 2c6h_A* 2bvj_A* 2ca0_A* 2c7x_A* 2vzm_A* 2vz7_A* 2vsj_A* 2wi9_A* 2whw_A*
Probab=99.78 E-value=3.9e-19 Score=141.15 Aligned_cols=120 Identities=18% Similarity=0.133 Sum_probs=85.9
Q ss_pred CCCCCCCCCCCCCccccccccCCCCCchHHHHHHHHhhCCeEEEEc-CCcCEEEecCHHHHHHHHHHcCccCCCCCChHH
Q 040924 5 RNNTKLPPGPWGLPFIGTLHQLDVSKPHVLFWELSKKYGPLMSLRL-GFSPSLVVSSAKMAKEILKTHDLQFCSRPALVA 83 (208)
Q Consensus 5 ~~~~~~~pgp~~~p~~g~~~~~~~~~~~~~~~~~~~~yG~v~~~~~-~~~~~v~i~dp~~~~~i~~~~~~~~~~~~~~~~ 83 (208)
++..+.||||+++|++|++......+++..+.++ ++||||+++++ ++.+.|+++||+.+++||.++ .|.+++....
T Consensus 22 ~~~~~~~PGP~~~p~lG~~~~~~~~~p~~~~~~l-~~yGpv~~~~~~~~~~~vvv~~~~~v~~vl~~~--~f~~~~~~~~ 98 (436)
T 2cd8_A 22 RRTQQGTTASPPVLDLGALGQDFAADPYPTYARL-RAEGPAHRVRTPEGDEVWLVVGYDRARAVLADP--RFSKDWRNST 98 (436)
T ss_dssp ------------CCBHHHHHHHHHHCCHHHHHHH-HTTCSEEEEECSSCCEEEEECSHHHHHHHHHCT--TEECCGGGCS
T ss_pred chhccCCCCCCccccCCCCCcccccChHHHHHHH-HHhCCeeeeccCCCCeEEEEcCHHHHHHHHcCC--CCcccccccc
Confidence 4556789999999999998633357889999999 89999999997 677899999999999999765 5655542111
Q ss_pred HHHh---hcCCcceeeCCCChHHHHHHHHHHHHhhccccccccccHHHH
Q 040924 84 QQKL---SYNGLDLAFSPYDEYWREIRKICAIHLFNSNRGQNFRPIEKM 129 (208)
Q Consensus 84 ~~~~---~~~~~~l~~~~~g~~w~~~Rk~l~~~~f~~~~l~~~~~~~~~ 129 (208)
.... ...+.++++++ |+.|+++|++++ ++|+.+.++.+.+.+.+
T Consensus 99 ~~~~~~~~~~~~~l~~~d-g~~h~~~R~~~~-~~fs~~~l~~~~~~i~~ 145 (436)
T 2cd8_A 99 TPLTEAEAALNHNMLESD-PPRHTRLRKLVA-REFTMRRVELLRPRVQE 145 (436)
T ss_dssp SCCCTTGGGTCCSGGGCC-TTHHHHHHHHHG-GGSSHHHHHTTHHHHHH
T ss_pred cccccccccccccccccC-chHHHHHHHHhH-HhhCHHHHHHHHHHHHH
Confidence 1100 12357788887 999999999999 99999999999998887
No 23
>3v8d_A Cholesterol 7-alpha-monooxygenase; cytochrome, oxidoreductase; HET: HEM 0GV; 1.90A {Homo sapiens} PDB: 3sn5_A* 3dax_A*
Probab=99.76 E-value=1.5e-19 Score=145.49 Aligned_cols=122 Identities=14% Similarity=0.105 Sum_probs=95.7
Q ss_pred CCCCCCCCCCCCCC-CccccccccCCCCCchHHHHHHHHhhCCeEEEEcCCcCEEEecCHHHHHHHHHHcCccCCCCCCh
Q 040924 3 TSRNNTKLPPGPWG-LPFIGTLHQLDVSKPHVLFWELSKKYGPLMSLRLGFSPSLVVSSAKMAKEILKTHDLQFCSRPAL 81 (208)
Q Consensus 3 ~~~~~~~~~pgp~~-~p~~g~~~~~~~~~~~~~~~~~~~~yG~v~~~~~~~~~~v~i~dp~~~~~i~~~~~~~~~~~~~~ 81 (208)
..++..+.||||++ +|++||++.+ ..+++.++.+++++||||+++++++.++++|+||+.+++|+.+.. .+...+..
T Consensus 7 ~~~~~~~~PPgp~~~lPliG~~~~~-~~~p~~~~~~l~~~yGpv~~~~lg~~~~vvv~~p~~v~~vl~~~~-~~~~~~~~ 84 (491)
T 3v8d_A 7 SRRRQTGEPPLENGLIPYLGCALQF-GANPLEFLRANQRKHGHVFTCKLMGKYVHFITNPLSYHKVLCHGK-YFDWKKFH 84 (491)
T ss_dssp CCCCCTTSCCEEEEEESSTTTTGGG-TCCHHHHHHHHHHHHCSEEEEEETTEEEEEECCGGGHHHHHSCCT-TEESSHHH
T ss_pred hhccCCCCCCCCCCCcceeccHHHH-hcCHHHHHHHHHHHcCCceEEEECCEEEEEEcCHHHHHHHHhcCC-ccchHHHH
Confidence 34556788999998 6999999998 789999999999999999999999999999999999999996543 22222111
Q ss_pred -HHHHHhhcCCcceeeCCCChHHHHHHHHHHHHhhccccccccccHHHH
Q 040924 82 -VAQQKLSYNGLDLAFSPYDEYWREIRKICAIHLFNSNRGQNFRPIEKM 129 (208)
Q Consensus 82 -~~~~~~~~~~~~l~~~~~g~~w~~~Rk~l~~~~f~~~~l~~~~~~~~~ 129 (208)
....... |.+.++..+|+.|+++|+.++ ++|+.+.++.+.+.+.+
T Consensus 85 ~~~~~~~~--g~~~~~~~~g~~~~~~Rr~~~-~~f~~~~l~~~~~~i~~ 130 (491)
T 3v8d_A 85 FALSAKAF--GHRSIDPMDGNTTENINDTFI-KTLQGHALNSLTESMME 130 (491)
T ss_dssp HHHHHHHH--TCCCCCGGGSSBCCCHHHHHH-HHHSHHHHHHHHHHHHH
T ss_pred HHHHHHhc--CCcccccccchhHHHHHHHHH-HHcCccchHHHHHHHHH
Confidence 1122222 334443333999999999998 99999999999888877
No 24
>3mdm_A Cholesterol 24-hydroxylase; CYP46A1, P450 46A1, thioperamide, monooxygenase, metab enzyme, oxidoreductase, heme, cholesterol metabolism; HET: HEM FJZ; 1.60A {Homo sapiens} PDB: 2q9g_A* 2q9f_A* 3mdr_A* 3mdt_A* 3mdv_A* 4enh_A* 4fia_A*
Probab=99.74 E-value=1.9e-17 Score=131.95 Aligned_cols=174 Identities=15% Similarity=0.249 Sum_probs=113.5
Q ss_pred CCchHHHHHHHHhhCCeEEEEcCCcCEEEecCHHHHHHHHHHcCccCCCCCChH-HHHHhh---cCCcceeeCCCChHHH
Q 040924 29 SKPHVLFWELSKKYGPLMSLRLGFSPSLVVSSAKMAKEILKTHDLQFCSRPALV-AQQKLS---YNGLDLAFSPYDEYWR 104 (208)
Q Consensus 29 ~~~~~~~~~~~~~yG~v~~~~~~~~~~v~i~dp~~~~~i~~~~~~~~~~~~~~~-~~~~~~---~~~~~l~~~~~g~~w~ 104 (208)
..++..+.+|+++||||+++++++.+.|+|+||+++++||.+ ..|.+++... ...... ..|.|++++.+|+.|+
T Consensus 10 ~~~~~~~~~~~~kyG~v~~~~~~~~~~vvv~~p~~~~~il~~--~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~w~ 87 (456)
T 3mdm_A 10 RVLQDVFLDWAKKYGPVVRVNVFHKTSVIVTSPESVKKFLMS--TKYNKDSKMYRALQTVFGERLFGQGLVSECNYERWH 87 (456)
T ss_dssp CCHHHHHHHHHHHHCSEEEEEETTEEEEEECCHHHHHHHHTC--TTSCCCHHHHHHHHEETTEESSTTSTTTCCCHHHHH
T ss_pred chHHHHHHHHHHHhCCeEEEEeCCCCEEEECCHHHHHHHHhh--ccccccchhHHHHHHhhcccccCCCcccCCChHHHH
Confidence 457888999999999999999999999999999999999953 3454443211 111111 1356787764599999
Q ss_pred HHHHHHHHHhhccccccccccHHHH------HHHHHhc--C--------------------------------hhHHHHH
Q 040924 105 EIRKICAIHLFNSNRGQNFRPIEKM------NLIHQQA--S--------------------------------RPLFVEL 144 (208)
Q Consensus 105 ~~Rk~l~~~~f~~~~l~~~~~~~~~------~~l~~~~--~--------------------------------~~~~~~~ 144 (208)
++|++++ ++|+.+.++.+.+.+.+ +.+.+.. + ..++...
T Consensus 88 ~~Rr~~~-~~fs~~~l~~~~~~i~~~~~~l~~~l~~~~~~~~~vd~~~~~~~~~~dvi~~~~fG~~~~~~~~~~~~~~~~ 166 (456)
T 3mdm_A 88 KQRRVID-LAFSRSSLVSLMETFNEKAEQLVEILEAKADGQTPVSMQDMLTYTAMDILAKAAFGMETSMLLGAQKPLSQA 166 (456)
T ss_dssp HHHHHHG-GGGSHHHHHTTHHHHHHHHHHHHHHHHHTCSSSSCEEHHHHHHHHHHHHHHHHHHSCCCCGGGTCCHHHHHH
T ss_pred HHHhhcc-cccCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeeeHHHHHHHHHHHHHHHHHcCCChhhhcccccHHHHH
Confidence 9999999 99999999999998887 3333321 1 0112111
Q ss_pred h------hhccccccccccccccchhhhhhhhHHHHHHHHHHHHHHhhcccccchhccccccHHHhhhc
Q 040924 145 V------LARGYFPFIGWIDKLTGMLQRPQNNFQEIDRVYQELIDKHLDPNRAKIEQLQQEDVIDVLLQ 207 (208)
Q Consensus 145 ~------~~~~~~p~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~l~~ll~ 207 (208)
+ ......|++.+++......+...++...+.+++.++|+++++..+.+...+ .|+++.+++
T Consensus 167 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~i~~r~~~~~~~~~~~--~d~l~~ll~ 233 (456)
T 3mdm_A 167 VKLMLEGITASRNTLAKFLPGKRKQLREVRESIRFLRQVGRDWVQRRREALKRGEEVP--ADILTQILK 233 (456)
T ss_dssp HHHHHHHHHHHHHSCGGGCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCC--CCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccch--hhHHHHHHH
Confidence 1 000112333333321122345566777788888889988876543322233 689988874
No 25
>1izo_A P450bsbeta, cytochrome P450 152A1; heme protein, protein-fatty acid complex, riken structural genomics/proteomics initiative, RSGI; HET: HEM PAM; 2.10A {Bacillus subtilis} SCOP: a.104.1.1 PDB: 2zqj_A* 2zqx_A*
Probab=99.71 E-value=4.6e-17 Score=128.48 Aligned_cols=181 Identities=9% Similarity=0.007 Sum_probs=119.3
Q ss_pred CccccccccCCCCCchHHHHHHHHhhC-CeEEEEcCCcCEEEecCHHHHHHHHHHcCccCCCCCChH--HHHHhhcCCcc
Q 040924 17 LPFIGTLHQLDVSKPHVLFWELSKKYG-PLMSLRLGFSPSLVVSSAKMAKEILKTHDLQFCSRPALV--AQQKLSYNGLD 93 (208)
Q Consensus 17 ~p~~g~~~~~~~~~~~~~~~~~~~~yG-~v~~~~~~~~~~v~i~dp~~~~~i~~~~~~~~~~~~~~~--~~~~~~~~~~~ 93 (208)
.|++||+..+ ..+++.++.+++++|| ||+++.+++.+.|+++||+.++.++ + .+.|..++... ....+. +..+
T Consensus 8 ~P~lG~~~~~-~~~p~~~~~~l~~~yg~pv~~~~~~g~~~v~v~~~~~~~~l~-~-~~~~~~~~~~~~~~~~~~~-g~~~ 83 (417)
T 1izo_A 8 DKSLDNSLTL-LKEGYLFIKNRTERYNSDLFQARLLGKNFICMTGAEAAKVFY-D-TDRFQRQNALPKRVQKSLF-GVNA 83 (417)
T ss_dssp CCCTTHHHHH-HHHGGGHHHHHHHHTTSSEEEEEETTEEEEEECSHHHHHHHT-C-TTTEECTTCSCHHHHTTTT-CTTC
T ss_pred CCccchHHHH-hhCcHHHHHHHHHHhCCCeEEeecCCccEEEECCHHHHHHHh-c-ccccccccccccchhhhhc-cccc
Confidence 3899999887 5688999999999998 8999998888999999999998554 3 23454433221 122222 2357
Q ss_pred eeeCCCChHHHHHHHHHHHHhhccccccccccHHHH---HHHHHhc--C----hhHHHHHh-----hhcc-------ccc
Q 040924 94 LAFSPYDEYWREIRKICAIHLFNSNRGQNFRPIEKM---NLIHQQA--S----RPLFVELV-----LARG-------YFP 152 (208)
Q Consensus 94 l~~~~~g~~w~~~Rk~l~~~~f~~~~l~~~~~~~~~---~~l~~~~--~----~~~~~~~~-----~~~~-------~~p 152 (208)
+++++ |+.|+++|++++ ++|+.+.++.+.+.+.+ +.++.+. + ...+..+. ..+. ...
T Consensus 84 l~~~d-g~~h~~~R~~~~-~~f~~~~l~~~~~~i~~~~~~l~~~l~~~~~~dl~~~~~~~~~~vi~~~~G~~~~~~~~~~ 161 (417)
T 1izo_A 84 IQGMD-GSAHIHRKMLFL-SLMTPPHQKRLAELMTEEWKAAVTRWEKADEVVLFEEAKEILCRVACYWAGVPLKETEVKE 161 (417)
T ss_dssp GGGCC-HHHHHHHHHHHH-HTSSHHHHHHHHHHHHHHHHHHHHHHTTSSEEEHHHHHHHHHHHHHHHHHTCCCCTTTHHH
T ss_pred eeecC-ChHHHHHHHHhh-hhcCHHHHHHHHHHHHHHHHHHHHHHhcCCCeeHHHHHHHHHHHHHHHHcCCCCCchHHHH
Confidence 88787 999999999999 99999999999998888 4455543 1 11121111 0000 000
Q ss_pred ccc-------ccccccchhhhhhhhHHHHHHHHHHHHHHhhcccccchhccccccHHHhhhc
Q 040924 153 FIG-------WIDKLTGMLQRPQNNFQEIDRVYQELIDKHLDPNRAKIEQLQQEDVIDVLLQ 207 (208)
Q Consensus 153 ~l~-------~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~l~~ll~ 207 (208)
+.. .+..+.+...+..++...+.+++.++|+++++.... ... .|+++.|++
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~r~~~~~~--~~~--~d~l~~ll~ 219 (417)
T 1izo_A 162 RADDFIDMVDAFGAVGPRHWKGRRARPRAEEWIEVMIEDARAGLLK--TTS--GTALHEMAF 219 (417)
T ss_dssp HHHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHHHHHHHHHTTSSC--CCT--TSHHHHHHH
T ss_pred HHHHHHHHHhhcccCCccchhHHHHHHHHHHHHHHHHHHHHhhccC--CCc--CCHHHHHHH
Confidence 000 000001223455677788999999999998876432 122 688888764
No 26
>3awm_A Fatty acid alpha-hydroxylase; cytochrome P450, peroxygenase, oxidoreductase; HET: HEM PLM; 1.65A {Sphingomonas paucimobilis} PDB: 3awq_A* 3awp_A*
Probab=99.69 E-value=1.1e-16 Score=126.26 Aligned_cols=184 Identities=11% Similarity=0.035 Sum_probs=117.5
Q ss_pred CCCCCCCccccccccCCCCCchHHHHHHHHhh-CCeEEEEcCCcCEEEecCHHHHHHHHHHcCccCCCCCChH--HHHHh
Q 040924 11 PPGPWGLPFIGTLHQLDVSKPHVLFWELSKKY-GPLMSLRLGFSPSLVVSSAKMAKEILKTHDLQFCSRPALV--AQQKL 87 (208)
Q Consensus 11 ~pgp~~~p~~g~~~~~~~~~~~~~~~~~~~~y-G~v~~~~~~~~~~v~i~dp~~~~~i~~~~~~~~~~~~~~~--~~~~~ 87 (208)
|||| |++||+..+ ..+++.++.+++++| |||+++.+++.+.+++++|+.++ ++.+. +.|.+++... ....+
T Consensus 4 pPg~---P~iG~~~~~-~~~p~~~~~~l~~~y~gpv~~~~~~g~~~~vv~~~~~~~-~l~~~-~~f~~~~~~~~~~~~~~ 77 (415)
T 3awm_A 4 TPHT---KGPDETLSL-LADPYRFISRQCQRLGANAFESRFLLKKTNCLKGAKAAE-IFYDT-TRFEREGAMPVAIQKTL 77 (415)
T ss_dssp --------CCCCHHHH-HHSTTTHHHHHHHHHTSSEEEEEETTEEEEEEESHHHHH-HHTCT-TTEECTTCSCHHHHTTT
T ss_pred CCCC---CccchHHHH-HhChHHHHHHHHHHhCCCeEEEecCCCcEEEEeCHHHHH-HHhcc-cccccccccchhhhhhc
Confidence 6676 799999887 567899999999999 79999998888899999999986 66543 3565443221 11112
Q ss_pred hcCCcceeeCCCChHHHHHHHHHHHHhhccccccccccHHHH---HHHHHhc--C----hhHHHHHh-----hhcc----
Q 040924 88 SYNGLDLAFSPYDEYWREIRKICAIHLFNSNRGQNFRPIEKM---NLIHQQA--S----RPLFVELV-----LARG---- 149 (208)
Q Consensus 88 ~~~~~~l~~~~~g~~w~~~Rk~l~~~~f~~~~l~~~~~~~~~---~~l~~~~--~----~~~~~~~~-----~~~~---- 149 (208)
.+..++++++ |+.|+++|++++ ++|+.+.++.+.+.+.+ +.++.+. + ...+..+. ..+.
T Consensus 78 -~g~~~l~~~d-g~~h~~~R~~~~-~~fs~~~l~~~~~~i~~~~~~ll~~~~~~~~vdl~~~~~~~~~~vi~~~~G~~~~ 154 (415)
T 3awm_A 78 -LGQGGVQGLD-GETHRHRKQMFM-GLMTPERVRALAQLFEAEWRRAVPGWTRKGEIVFYDELHEPLTRAVCAWAGVPLP 154 (415)
T ss_dssp -SCSSSGGGCC-HHHHHHHHHHHH-TTCCHHHHHHHHHHHHHHHHHHHHHHHHHSEEEHHHHHHHHHHHHHHHHHTCCCC
T ss_pred -cCCcceeecC-cHHHHHHHHHHH-HhcCHHHHHHHHHHHHHHHHHHHHhhccCCcEeHHHHHHHHHHHHHHHHcCCCCC
Confidence 1235788887 999999999999 99999999999998887 3344332 2 11121111 0000
Q ss_pred ---cccccc-------ccccccchhhhhhhhHHHHHHHHHHHHHHhhcccccchhccccccHHHhhhc
Q 040924 150 ---YFPFIG-------WIDKLTGMLQRPQNNFQEIDRVYQELIDKHLDPNRAKIEQLQQEDVIDVLLQ 207 (208)
Q Consensus 150 ---~~p~l~-------~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~l~~ll~ 207 (208)
+..+.. .+..+.+...+..++...+.+++.++|+++++.... ... .|+++.|++
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~r~~~~~~--~~~--~d~l~~ll~ 218 (415)
T 3awm_A 155 DDEAGNRAGELRALFDAAGSASPRHLWSRLARRRVDAWAKRIIEGIRAGSIG--SGS--GTAAYAIAW 218 (415)
T ss_dssp GGGHHHHHHHHHHHHHSTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHTSSC--CCT--TSHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHHHHHHHHHHHHhhhc--CCC--CCHHHHHHh
Confidence 000000 010001223456677888999999999988875321 122 688888764
No 27
>1jfb_A Nitric-oxide reductase cytochrome P450 55A1; cytochrome P450NOR, atomic resolutio structural genomics/proteomics initiative, RSGI; HET: HEM; 1.00A {Fusarium oxysporum} SCOP: a.104.1.1 PDB: 1jfc_A* 1gej_A* 1ged_A* 1ehe_A* 1gei_A* 1rom_A* 2rom_A* 1ehf_A* 1cl6_A* 1ehg_A* 1cmj_A* 1f25_A* 1f24_A* 1xqd_A* 1f26_A* 1cmn_A* 1ulw_A*
Probab=99.68 E-value=6.7e-17 Score=127.04 Aligned_cols=113 Identities=14% Similarity=0.150 Sum_probs=82.3
Q ss_pred CCCCCCCCccccccccCCCCCchHHHHHHHHhhCCeEEEEcC-CcCEEEecCHHHHHHHHHHcC-ccCCCCCChHH---H
Q 040924 10 LPPGPWGLPFIGTLHQLDVSKPHVLFWELSKKYGPLMSLRLG-FSPSLVVSSAKMAKEILKTHD-LQFCSRPALVA---Q 84 (208)
Q Consensus 10 ~~pgp~~~p~~g~~~~~~~~~~~~~~~~~~~~yG~v~~~~~~-~~~~v~i~dp~~~~~i~~~~~-~~~~~~~~~~~---~ 84 (208)
.||||+++|++|++.. +++..+.++. +||||+++.++ +...+++++++.+++||.++. ..+..++.... .
T Consensus 2 ~pPGp~~~P~~g~~~~----~p~~~~~~l~-~~Gpv~~~~~~~g~~~~vv~~~~~v~~vl~~~~~~~~~~r~~~~~~~~~ 76 (404)
T 1jfb_A 2 MASGAPSFPFSRASGP----EPPAEFAKLR-ATNPVSQVKLFDGSLAWLVTKHKDVCFVATSEKLSKVRTRQGFPELSAS 76 (404)
T ss_dssp ----CCBSSCCCSSTT----SCCTHHHHHH-HHCSEEEEECTTSCEEEEECSHHHHHHHHHCTTEECCTTSTTCCCCSHH
T ss_pred CCCCCCCCCCCCCcCC----CccHHHHHHH-HhCCeeeeecCCCCceEEEecHHHHHHHHcCCcccccccccCCcccccc
Confidence 5899999999999753 7788888886 59999999864 566777899999999997652 22333332111 1
Q ss_pred -HHhhcCCcceeeCCCChHHHHHHHHHHHHhhccccccccccHHHH
Q 040924 85 -QKLSYNGLDLAFSPYDEYWREIRKICAIHLFNSNRGQNFRPIEKM 129 (208)
Q Consensus 85 -~~~~~~~~~l~~~~~g~~w~~~Rk~l~~~~f~~~~l~~~~~~~~~ 129 (208)
.....++.++++++ |+.|+++|++++ ++|+.+.++.+.+.+.+
T Consensus 77 ~~~~~~~~~~l~~~~-g~~h~~~R~~~~-~~fs~~~l~~~~~~i~~ 120 (404)
T 1jfb_A 77 GKQAAKAKPTFVDMD-PPEHMHQRSMVE-PTFTPEAVKNLQPYIQR 120 (404)
T ss_dssp HHHHTTSCCCGGGCC-TTHHHHHHTTTG-GGGSHHHHHHHHHHHHH
T ss_pred ccchhcccCcccccC-chhHHHHHHHhh-hhcCHHHHHHHHHHHHH
Confidence 11122345788887 999999999999 99999999999998887
No 28
>1ued_A P450 OXYC, P450 monooxygenase; cytochrome P450 vancomycin biosynthesis, oxidoreductase; HET: HEM PG4; 1.90A {Amycolatopsis orientalis} SCOP: a.104.1.1
Probab=99.66 E-value=2.9e-16 Score=123.59 Aligned_cols=181 Identities=14% Similarity=0.189 Sum_probs=116.5
Q ss_pred CCCCCCCCCCccccccccCCCCCchHHHHHHHHhhCCeEEEE----c-CC-cCEEEecCHHHHHHHH-HHcCccCCCCCC
Q 040924 8 TKLPPGPWGLPFIGTLHQLDVSKPHVLFWELSKKYGPLMSLR----L-GF-SPSLVVSSAKMAKEIL-KTHDLQFCSRPA 80 (208)
Q Consensus 8 ~~~~pgp~~~p~~g~~~~~~~~~~~~~~~~~~~~yG~v~~~~----~-~~-~~~v~i~dp~~~~~i~-~~~~~~~~~~~~ 80 (208)
..+||||+++|+. + ..+++..+.++ ++||||++++ + ++ .++|+++||+.+++|| .+. .|.+++.
T Consensus 9 ~~lppgp~~~p~~-----~-~~~p~~~~~~l-~~yGpv~~~~~~~~~~~~~~~~vvv~~~~~i~~vl~~~~--~~~~~~~ 79 (406)
T 1ued_A 9 APLLREPANFQLR-----T-NCDPHEDNFGL-RAHGPLVRIVGESSTQLGRDFVWQAHGYEVVRRILGDHE--HFTTRPQ 79 (406)
T ss_dssp CCEEECCTTTTCE-----E-TTEECHHHHHH-HTTCSEEEEESHHHHHTTSSCEEEECSHHHHHHHHHCCS--SEECCCC
T ss_pred CCCcccCcccCCC-----C-CCCcHHHHHHH-HHhCCeeeecccccCCCCCccEEEEcCHHHHHHHHhhCc--ccccccc
Confidence 5578999998876 2 57788999999 9999999999 6 78 8999999999999999 443 3444443
Q ss_pred hHHHH-Hhh---cCCcceeeCCCChHHHHHHHHHHHHhhccccccccccHHHH---HHHHHhc--C-----hhHHHH-Hh
Q 040924 81 LVAQQ-KLS---YNGLDLAFSPYDEYWREIRKICAIHLFNSNRGQNFRPIEKM---NLIHQQA--S-----RPLFVE-LV 145 (208)
Q Consensus 81 ~~~~~-~~~---~~~~~l~~~~~g~~w~~~Rk~l~~~~f~~~~l~~~~~~~~~---~~l~~~~--~-----~~~~~~-~~ 145 (208)
..... .+. ..+.++++++ |+.|+++|++++ ++|+.+.++.+.+.+.+ +.++.+. + ...+.. +.
T Consensus 80 ~~~~~~~~~~~~~~~~~l~~~~-g~~~~~~R~~~~-~~fs~~~l~~~~~~i~~~~~~l~~~l~~~g~~~d~~~~~~~~~~ 157 (406)
T 1ued_A 80 FTQSKSGAHVEAQFVGQISTYD-PPEHTRLRKMLT-PEFTVRRIRRMEPAIQSLIDDRLDLLEAEGPSADLQGLFADPVG 157 (406)
T ss_dssp C---------CGGGTTCGGGCC-TTHHHHHHHHHG-GGSSHHHHHHHHHHHHHHHHHHHHHHHHHCTTEEHHHHTHHHHH
T ss_pred ccccccccccccccccccccCC-CHHHHHHHHHhh-hhhCHHHHHHHHHHHHHHHHHHHHHHHhcCCCeeHHHHHHHHhH
Confidence 11110 111 1245788887 999999999999 99999999999998887 3333221 2 111221 11
Q ss_pred -----hhcc--------ccccccccccccchhhhhhhhHHHHHHHHHHHHHHhhcccccchhccccccHHHhhhc
Q 040924 146 -----LARG--------YFPFIGWIDKLTGMLQRPQNNFQEIDRVYQELIDKHLDPNRAKIEQLQQEDVIDVLLQ 207 (208)
Q Consensus 146 -----~~~~--------~~p~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~l~~ll~ 207 (208)
.++. +..+...+.......++..++...+.+++.++|+++++.. . .|+++.|++
T Consensus 158 ~~vi~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~r~~~~------~--~d~l~~ll~ 224 (406)
T 1ued_A 158 AHALCELLGIPRDDQREFVRRIRRNADLSRGLKARAADSAAFNRYLDNLLARQRADP------D--DGLLGMIVR 224 (406)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHCC---CCHHHHHHHHHHHHHHHHHHHHHHHHSC------C--SSHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHhCC------C--CCHHHHHHH
Confidence 0000 0001111100011124566777788899999998877541 2 578887764
No 29
>1cpt_A Cytochrome P450-TERP; oxidoreductase(oxygenase); HET: HEM; 2.30A {Pseudomonas SP} SCOP: a.104.1.1
Probab=99.64 E-value=1.9e-15 Score=119.64 Aligned_cols=115 Identities=13% Similarity=0.067 Sum_probs=87.0
Q ss_pred CCCCCCCCCCCCccccccccCC---C-CCchHHHHHHHHhhCCeEEEEc-CCcCEEEecCHHHHHHHHHHcCccCCCCCC
Q 040924 6 NNTKLPPGPWGLPFIGTLHQLD---V-SKPHVLFWELSKKYGPLMSLRL-GFSPSLVVSSAKMAKEILKTHDLQFCSRPA 80 (208)
Q Consensus 6 ~~~~~~pgp~~~p~~g~~~~~~---~-~~~~~~~~~~~~~yG~v~~~~~-~~~~~v~i~dp~~~~~i~~~~~~~~~~~~~ 80 (208)
.+.++||| ++|++.... . .+++..+.++.+ ||||+++++ |+.+.+++++++.+++|+.+. +.|.+++.
T Consensus 3 ~~~~~pp~-----~~g~l~~~~~~~~~~~p~~~~~~l~~-~gpv~~~~~~g~~~~vvv~~~~~v~~vl~~~-~~fs~r~~ 75 (428)
T 1cpt_A 3 ARATIPEH-----IARTVILPQGYADDEVIYPAFKWLRD-EQPLAMAHIEGYDPMWIATKHADVMQIGKQP-GLFSNAEG 75 (428)
T ss_dssp TTCCSCHH-----HHHHHHSSGGGGCHHHHHHHHHHHHH-HCSEEEECCTTSCCEEEECSHHHHHHHHHCT-TTEESSSS
T ss_pred cccccchh-----hhcccCChhhhcccCCccHHHHHHHH-hCCeeeccccCCCCeEEEccHHHHHHHHcCc-hhccCccc
Confidence 35678888 888865541 1 347778888876 799999987 678999999999999999653 46766653
Q ss_pred -hHH---HH-H-h---hc----CCcceeeCCCChHHHHHHHHHHHHhhccccccccccHHHH
Q 040924 81 -LVA---QQ-K-L---SY----NGLDLAFSPYDEYWREIRKICAIHLFNSNRGQNFRPIEKM 129 (208)
Q Consensus 81 -~~~---~~-~-~---~~----~~~~l~~~~~g~~w~~~Rk~l~~~~f~~~~l~~~~~~~~~ 129 (208)
... .. . + .+ .+.++++++ |+.|+++|++++ ++|+.+.++.+.+.+.+
T Consensus 76 ~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~-g~~~~~~Rr~~~-~~fs~~~l~~~~~~i~~ 135 (428)
T 1cpt_A 76 SEILYDQNNEAFMRSISGGCPHVIDSLTSMD-PPTHTAYRGLTL-NWFQPASIRKLEENIRR 135 (428)
T ss_dssp CSSCCCHHHHHHHHHHTTTSSCSSCCGGGCC-TTHHHHHHHHHH-TTSSHHHHGGGHHHHHH
T ss_pred cccCCcccccchhccccccccccccccccCC-hHHHHHHHHHhh-hhhCHHHHHHHHHHHHH
Confidence 211 11 1 2 21 135788887 999999999999 99999999999998887
No 30
>2zbx_A Cytochrome P450-SU1; beta prism, heme, iron, metal-binding, monooxygenase, oxidoreductase; HET: HEM; 1.50A {Streptomyces griseolus} PDB: 2zby_A* 2zbz_A* 3cv8_A* 3cv9_A*
Probab=99.60 E-value=3.5e-15 Score=117.59 Aligned_cols=116 Identities=16% Similarity=0.110 Sum_probs=84.1
Q ss_pred CCCCCCCCCCccccccccCCCCCchHHHHHHHHhh-CCeEEEEc-CCcCEEEecCHHHHHHHHHHcCccCCCCCChHHHH
Q 040924 8 TKLPPGPWGLPFIGTLHQLDVSKPHVLFWELSKKY-GPLMSLRL-GFSPSLVVSSAKMAKEILKTHDLQFCSRPALVAQQ 85 (208)
Q Consensus 8 ~~~~pgp~~~p~~g~~~~~~~~~~~~~~~~~~~~y-G~v~~~~~-~~~~~v~i~dp~~~~~i~~~~~~~~~~~~~~~~~~ 85 (208)
...+|||++.|.+..-..+ ..+++..+.++ ++| |||+++++ ++.+.++++||+.+++||.++ .|.+++......
T Consensus 4 ~~~~~~~~~~P~~~~~~~~-~~~p~~~~~~l-~~~yGpv~~~~~~g~~~~vvv~~~~~v~~vl~~~--~~~~~~~~~~~~ 79 (412)
T 2zbx_A 4 TATTPQTTDAPAFPSNRSC-PYQLPDGYAQL-RDTPGPLHRVTLYDGRQAWVVTKHEAARKLLGDP--RLSSNRTDDNFP 79 (412)
T ss_dssp ----CCCCSSCBSSCCCSS-TTSCCHHHHHH-HHSSSSEEEEECTTSCEEEEECSHHHHHHHHTCT--TEECCTTSTTSC
T ss_pred CCCCCCCCCCCCCCCCchh-ccChHHHHHHH-HhcCCCeEeeccCCCCcEEEEecHHHHHHHHcCc--ccccCccccccc
Confidence 4567888888866333334 57889999999 788 99999997 788999999999999999754 233333211111
Q ss_pred H-------hhcCCcceeeCCCChHHHHHHHHHHHHhhccccccccccHHHH
Q 040924 86 K-------LSYNGLDLAFSPYDEYWREIRKICAIHLFNSNRGQNFRPIEKM 129 (208)
Q Consensus 86 ~-------~~~~~~~l~~~~~g~~w~~~Rk~l~~~~f~~~~l~~~~~~~~~ 129 (208)
. ....+.++++++ |+.|+++|++++ ++|+.+.++.+.+.+.+
T Consensus 80 ~~~~~~~~~~~~~~~l~~~~-g~~h~~~R~~~~-~~fs~~~l~~~~~~i~~ 128 (412)
T 2zbx_A 80 ATSPRFEAVRESPQAFIGLD-PPEHGTRRRMTI-SEFTVKRIKGMRPEVEE 128 (412)
T ss_dssp CCSGGGC----CCCCGGGCC-TTHHHHHHTTTG-GGGSHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccCC-cHHHHHHHHHhh-hhcCHHHHHHHHHHHHH
Confidence 0 100245788887 999999999999 99999999999998887
No 31
>1n97_A CYP175A1; electron transport; HET: SRT HEM; 1.80A {Thermus thermophilus} SCOP: a.104.1.1 PDB: 1wiy_A*
Probab=99.60 E-value=1.6e-16 Score=124.30 Aligned_cols=110 Identities=16% Similarity=0.116 Sum_probs=91.5
Q ss_pred CCCCCCccccccccCCCCCchHHHHHHHHhhCCeEEEEcCCcCEEEecCHHHHHHHHHHcCccCCCCC-ChHHHHHhhcC
Q 040924 12 PGPWGLPFIGTLHQLDVSKPHVLFWELSKKYGPLMSLRLGFSPSLVVSSAKMAKEILKTHDLQFCSRP-ALVAQQKLSYN 90 (208)
Q Consensus 12 pgp~~~p~~g~~~~~~~~~~~~~~~~~~~~yG~v~~~~~~~~~~v~i~dp~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~ 90 (208)
+++..+|++||++.+ ..+++..+.+++++||||++ ++++.+.++++||+.+++|+.++ .|.+++ .......+.
T Consensus 2 ~~~~~~p~iGnl~~~-~~~p~~~~~~l~~~yGpv~~-~~g~~~~vvv~~~~~i~~il~~~--~f~~~~~~~~~~~~~~-- 75 (389)
T 1n97_A 2 KRLSLREAWPYLKDL-QQDPLAVLLAWGRAHPRLFL-PLPRFPLALIFDPEGVEGALLAE--GTTKATFQYRALSRLT-- 75 (389)
T ss_dssp EECCHHHHHHHHHHH-HHCHHHHHHHHHHHCSEEEE-CCTTCCEEEECSHHHHHHHHHCT--TEECCSHHHHHHHHHH--
T ss_pred cccccccccccHHHH-hhChHHHHHHHHHHcCCeeE-ecCCccEEEECCHHHHHHHHhcC--CCCCChhHHHHHHHHh--
Confidence 456668999999887 56788999999999999999 88888999999999999999765 676665 222222232
Q ss_pred CcceeeCCCChHHHHHHHHHHHHhhccccccccccHHHH
Q 040924 91 GLDLAFSPYDEYWREIRKICAIHLFNSNRGQNFRPIEKM 129 (208)
Q Consensus 91 ~~~l~~~~~g~~w~~~Rk~l~~~~f~~~~l~~~~~~~~~ 129 (208)
|.|+++++ |+.|+++|++++ ++|+.+.++.+.+.+.+
T Consensus 76 g~~l~~~~-g~~h~~~R~~~~-~~fs~~~l~~~~~~i~~ 112 (389)
T 1n97_A 76 GRGLLTDW-GESWKEARKALK-DPFLPKNVRGYREAMEE 112 (389)
T ss_dssp CSSTTTCC-HHHHHHHHHHHC-GGGSHHHHHTTHHHHHH
T ss_pred CCccccCC-cHHHHHHHHHhC-cccCHHHHHHHHHHHHH
Confidence 57888887 999999999999 99999999999998887
No 32
>3dax_A Cytochrome P450 7A1; cholesterol, cholesterol 7-alpha hydroxylase, structural genomics, structural genomics consortium, SGC, cholesterol metabolism; HET: HEM; 2.15A {Homo sapiens} PDB: 3sn5_A*
Probab=99.59 E-value=1.6e-16 Score=127.62 Aligned_cols=120 Identities=14% Similarity=0.121 Sum_probs=91.9
Q ss_pred CCCCCCCCCCCCC-CccccccccCCCCCchHHHHHHHHhhCCeEEEEcCCcCEEEecCHHHHHHHHHHcCccCCCCCCh-
Q 040924 4 SRNNTKLPPGPWG-LPFIGTLHQLDVSKPHVLFWELSKKYGPLMSLRLGFSPSLVVSSAKMAKEILKTHDLQFCSRPAL- 81 (208)
Q Consensus 4 ~~~~~~~~pgp~~-~p~~g~~~~~~~~~~~~~~~~~~~~yG~v~~~~~~~~~~v~i~dp~~~~~i~~~~~~~~~~~~~~- 81 (208)
.++..+.||||++ +|++||++.+ ..+++..+.+++++||+||++++++.++|+|+||+.+++|+.+... +..++..
T Consensus 8 ~~~~~~~pPgp~~~~P~iG~~~~~-~~~~~~~~~~~~~kyG~i~~~~~g~~~~vvv~dp~~~~~il~~~~~-~~~~~~~~ 85 (491)
T 3dax_A 8 RRRQTGEPPLENGLIPYLGCALQF-GANPLEFLRANQRKHGHVFTCKLMGKYVHFITNPLSYHKVLCHGKY-FDWKKFHF 85 (491)
T ss_dssp CCCCTTCCCEEEEEESCTTTTGGG-TCCHHHHHHHHHHHHCSEEEEEETTEEEEEECCGGGTHHHHSCCTT-EESSHHHH
T ss_pred hccCCCCCCcCCCcccchhhHHHH-hhCHHHHHHHHHHhcCCeEEEEECCeEEEEEcChHHHHHHHcCCcc-CChHHHHH
Confidence 3445678899987 7999999988 5678899999999999999999999999999999999999965431 2222211
Q ss_pred HHHHHhhcCCccee-eCCCChHHHHHHHHHHHHhhccccccccccHHHH
Q 040924 82 VAQQKLSYNGLDLA-FSPYDEYWREIRKICAIHLFNSNRGQNFRPIEKM 129 (208)
Q Consensus 82 ~~~~~~~~~~~~l~-~~~~g~~w~~~Rk~l~~~~f~~~~l~~~~~~~~~ 129 (208)
....... |.|++ +++ |+.|+++|+.+. ++|+.+.++.+.+.+.+
T Consensus 86 ~~~~~~~--g~~~~~~~~-g~~w~~~r~~~~-~~f~~~~l~~~~~~~~~ 130 (491)
T 3dax_A 86 ATSAKAF--GHRSIDPMD-GNTTENINDTFI-KTLQGHALNSLTESMME 130 (491)
T ss_dssp HHHHHHH--TCCCCCGGG-TSBCCCHHHHHH-HHHSHHHHHHHHHHHHH
T ss_pred HHHHHHc--CCCcccccc-hhHHHHHHHHHH-HhcCcccHHHHHHHHHH
Confidence 1111222 45666 666 899999999999 89998888877666655
No 33
>3lxh_A Cytochrome P450; heme, iron, metal-binding, monooxygena oxidoreductase; HET: HEM; 2.20A {Novosphingobium aromaticivorans} SCOP: a.104.1.0 PDB: 3lxi_A*
Probab=99.59 E-value=2.5e-14 Score=113.02 Aligned_cols=165 Identities=14% Similarity=0.064 Sum_probs=109.3
Q ss_pred CCchHHHHHHHHhhC-CeEEEEcCCcCEEEecCHHHHHHHHHHcCccCCCCCChHHHHHhhcCCcceeeCCCChHHHHHH
Q 040924 29 SKPHVLFWELSKKYG-PLMSLRLGFSPSLVVSSAKMAKEILKTHDLQFCSRPALVAQQKLSYNGLDLAFSPYDEYWREIR 107 (208)
Q Consensus 29 ~~~~~~~~~~~~~yG-~v~~~~~~~~~~v~i~dp~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~w~~~R 107 (208)
.+++..+.++.+++| ||+++..++ +.++|+||+.+++|+. +.+.|.+++...........+.++++++ |+.|+++|
T Consensus 38 ~dp~~~~~~lr~~~G~pv~~~~~~~-~~~vv~~~~~v~~vl~-~~~~f~~~~~~~~~~~~~~~~~~~~~~d-g~~h~~~R 114 (421)
T 3lxh_A 38 QGFHEAWKRVQQPDTPPLVWTPFTG-GHWIATRGTLIDEIYR-SPERFSSRVIWVPREAGEAYDMVPTKLD-PPEHTPYR 114 (421)
T ss_dssp GCHHHHHHHHCCTTCCSEEEESSTT-SEEEECSHHHHHHHHT-CTTTEETTCCSSSHHHHHHCCCTTTTCC-TTTHHHHH
T ss_pred cChhHHHHHHHhcCCCCeEeccCCC-CeEEEcCHHHHHHHHc-ChhhccCCcccCCcccccccccCCccCC-cHHHHHHH
Confidence 578889988887655 899987765 5899999999999994 4457766653221111122356778887 99999999
Q ss_pred HHHHHHhhccccccccccHHHH---HHHHHhc--Ch----hHH---------HHHh------------hhcccccccccc
Q 040924 108 KICAIHLFNSNRGQNFRPIEKM---NLIHQQA--SR----PLF---------VELV------------LARGYFPFIGWI 157 (208)
Q Consensus 108 k~l~~~~f~~~~l~~~~~~~~~---~~l~~~~--~~----~~~---------~~~~------------~~~~~~p~l~~l 157 (208)
++++ ++|+.+.++.+.+.+.+ +.++.+. +. .++ ..++ ....++....++
T Consensus 115 ~~~~-~~fs~~~l~~~~~~i~~~~~~l~~~l~~~~~~d~~~~~~~~~~~~v~~~~~G~~~~~~~~~~~~~~~~~~~~~~~ 193 (421)
T 3lxh_A 115 KAID-KGLNLAEIRKLEDQIRTIAVEIIEGFADRGHCEFGSEFSTVFPVRVFLALAGLPVEDATKLGLLANEMTRPSGNT 193 (421)
T ss_dssp HHHH-HHHSHHHHHTTHHHHHHHHHHHHHTTTTTSEEEHHHHTTTTHHHHHHHHHHTCCGGGHHHHHHHHHHHHSCCCSS
T ss_pred HHHh-hhcCHHHHHHHHHHHHHHHHHHHHHHhhcCCeehHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhccccCC
Confidence 9999 99999999999998887 4444442 10 111 1111 000011111111
Q ss_pred ccccchhhhhhhhHHHHHHHHHHHHHHhhcccccchhccccccHHHhhhc
Q 040924 158 DKLTGMLQRPQNNFQEIDRVYQELIDKHLDPNRAKIEQLQQEDVIDVLLQ 207 (208)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~l~~ll~ 207 (208)
+ ....++..++...+.+++.++|+++++.. . .|+++.|++
T Consensus 194 p--~~~~~~~~~~~~~~~~~~~~~i~~r~~~~------~--~dll~~ll~ 233 (421)
T 3lxh_A 194 P--EEQGRSLEAANKGFFEYVAPIIAARRGGS------G--TDLITRILN 233 (421)
T ss_dssp H--HHHHHHHHHHHHHHHHHHHHHHHHHTTCC------C--CSHHHHHHT
T ss_pred C--chhHHHHHHHHHHHHHHHHHHHHHHHhCC------C--CCHHHHHHh
Confidence 1 12256777888899999999999887761 2 577777764
No 34
>3ivy_A Cytochrome P450 CYP125; cholesterol, monooxygenase, H iron, metal-binding, oxidoreductase; HET: HEM; 1.35A {Mycobacterium tuberculosis} PDB: 3iw0_A* 3iw1_A* 3iw2_A* 2x5w_A* 2x5l_A* 2xc3_A* 2xn8_A*
Probab=99.59 E-value=9.6e-15 Score=115.83 Aligned_cols=117 Identities=16% Similarity=0.094 Sum_probs=85.9
Q ss_pred CCCCCCCCCCccccccccCCCCCchHHHHHHHHhhCCeEEEE--------cCCcCEEEecCHHHHHHHHHHcCccCCCCC
Q 040924 8 TKLPPGPWGLPFIGTLHQLDVSKPHVLFWELSKKYGPLMSLR--------LGFSPSLVVSSAKMAKEILKTHDLQFCSRP 79 (208)
Q Consensus 8 ~~~~pgp~~~p~~g~~~~~~~~~~~~~~~~~~~~yG~v~~~~--------~~~~~~v~i~dp~~~~~i~~~~~~~~~~~~ 79 (208)
...||+|.+++++...... .++++..+.++ ++||||+++. +|+.+.++|++++.+++|+.+. ..|.+++
T Consensus 17 ~~~p~~~~~~~~~~~~~~~-~~~p~~~~~~l-r~~gPv~~~~~~~g~~~~lG~~~~~vv~~~~~v~~vl~~~-~~fs~~~ 93 (433)
T 3ivy_A 17 VPSPNLPPGFDFTDPAIYA-ERLPVAEFAEL-RSAAPIWWNGQDPGKGGGFHDGGFWAITKLNDVKEISRHS-DVFSSYE 93 (433)
T ss_dssp ---CCCCTTCCTTCHHHHT-TCCCHHHHHHH-HHHCSEEEEECCTTCSTTCCSSEEEEECSHHHHHHHHHCT-TTEESTT
T ss_pred cCCCCCCCCCCCCCHHHhh-cCCccHHHHHH-HhcCCEEecccccccccccCCCCEEEEecHHHHHHHHcCh-hhccCCc
Confidence 3456677666666543322 35689999888 7899999998 4447899999999999999643 5566554
Q ss_pred ChHHH--------HHhhcCCcceeeCCCChHHHHHHHHHHHHhhccccccccccHHHH
Q 040924 80 ALVAQ--------QKLSYNGLDLAFSPYDEYWREIRKICAIHLFNSNRGQNFRPIEKM 129 (208)
Q Consensus 80 ~~~~~--------~~~~~~~~~l~~~~~g~~w~~~Rk~l~~~~f~~~~l~~~~~~~~~ 129 (208)
..... ......+.++++++ |+.|+++|++++ ++|+.+.++.+.+.+.+
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~l~~~d-g~~h~~~R~~~~-~~fs~~~l~~~~~~i~~ 149 (433)
T 3ivy_A 94 NGVIPRFKNDIAREDIEVQRFVMLNMD-APHHTRLRKIIS-RGFTPRAVGRLHDELQE 149 (433)
T ss_dssp TCSCCCCCTTCCHHHHHGGGGSGGGCC-TTHHHHHHHHHG-GGSCHHHHHTTHHHHHH
T ss_pred ccccccccccccccccccccCCccccC-hHHHHHHHHHHH-HhhCHHHHHHHHHHHHH
Confidence 32111 11222357888887 999999999999 99999999999998888
No 35
>2zwu_A Camphor 5-monooxygenase; P450CAM, camphor-hydroxylase, heme, iron, metal-binding, oxidoreductase, substrate-soaking, cytoplasm; HET: HEM CAM; 1.30A {Pseudomonas putida} PDB: 1gem_A* 1iwi_A* 2l8m_A* 2z97_A* 1gek_A* 2zax_A* 2zaw_A* 2zwt_A* 1rf9_A* 1lwl_A* 1iwk_A* 1iwj_A* 2zui_A* 2fe6_A* 1geb_A* 1yrc_A* 1noo_A* 1cp4_A* 1pha_A* 1phc_A* ...
Probab=99.58 E-value=3.8e-14 Score=111.83 Aligned_cols=186 Identities=12% Similarity=0.046 Sum_probs=116.0
Q ss_pred CCCCCCCCCCCCCCccc--cccccC----CCCCchHHHHHHHHhhC--CeEEEE-cCCcCEEEecCHHHHHHHHHHcCcc
Q 040924 4 SRNNTKLPPGPWGLPFI--GTLHQL----DVSKPHVLFWELSKKYG--PLMSLR-LGFSPSLVVSSAKMAKEILKTHDLQ 74 (208)
Q Consensus 4 ~~~~~~~~pgp~~~p~~--g~~~~~----~~~~~~~~~~~~~~~yG--~v~~~~-~~~~~~v~i~dp~~~~~i~~~~~~~ 74 (208)
+.++.++||||.+.|.. +.+-.+ ...+++..+.+|. +|| ||+++. ++ +.++++||+.+++||.+ .+.
T Consensus 6 ~~~~~~~~~~p~~~p~~~~~~~~~~~~~~~~~~p~~~~~~l~-~~G~~pv~~~~~~g--~~vvv~~~~~v~~vl~~-~~~ 81 (415)
T 2zwu_A 6 IQSNANLAPLPPHVPEHLVFDFDMYNPSNLSAGVQEAWAVLQ-ESNVPDLVWTRCNG--GHWIATRGQLIREAYED-YRH 81 (415)
T ss_dssp -----CCCCCCTTSCGGGBCCCCTTSCTTGGGCHHHHHHGGG-STTSCSEEEECGGG--CEEEECSHHHHHHHHHC-TTT
T ss_pred ccCccccCCCCCCCCcccccccCcCChhhcccChHHHHHHHH-hcCCCCeEEecCCC--CeEEEcCHHHHHHHHcC-ccc
Confidence 35567899999998864 433211 1346788888885 799 999998 54 69999999999999964 446
Q ss_pred CCCCC-ChHHHHHhhcCCcc-eeeCCCChHHHHHHHHHHHHhhccccccccccHHHH---HHHHHhc--ChhHHHH-H--
Q 040924 75 FCSRP-ALVAQQKLSYNGLD-LAFSPYDEYWREIRKICAIHLFNSNRGQNFRPIEKM---NLIHQQA--SRPLFVE-L-- 144 (208)
Q Consensus 75 ~~~~~-~~~~~~~~~~~~~~-l~~~~~g~~w~~~Rk~l~~~~f~~~~l~~~~~~~~~---~~l~~~~--~~~~~~~-~-- 144 (208)
|.+++ ........ .+.+ +++++ |+.|+++|++++ ++|+.+.++.+.+.+.+ +.++.+. +.-++.. +
T Consensus 82 f~~~~~~~~~~~~~--~~~~~l~~~~-g~~~~~~R~~~~-~~f~~~~l~~~~~~i~~~~~~l~~~l~~~~~~d~~~~~~~ 157 (415)
T 2zwu_A 82 FSSECPFIPREAGE--AYDFIPTSMD-PPEQRQFRALAN-QVVGMPVVDKLENRIQELACSLIESLRPQGQCNFTEDYAE 157 (415)
T ss_dssp EETTSCSSSHHHHH--HCCCTTTTCC-TTTTHHHHHHHH-HHHSHHHHHHHHHHHHHHHHHHHHHHGGGTEEEHHHHTTT
T ss_pred cCCCcccCCCCccc--cccccCccCC-CcHHHHHHHHHH-hhhCHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHH
Confidence 77665 22222211 1456 88887 999999999999 99999999999998887 4444432 2111111 1
Q ss_pred --h--hhcccc--cc---------cccc-ccccchhhhhhhhHHHHHHHHHHHHHHhhcccccchhccccccHHHhhhc
Q 040924 145 --V--LARGYF--PF---------IGWI-DKLTGMLQRPQNNFQEIDRVYQELIDKHLDPNRAKIEQLQQEDVIDVLLQ 207 (208)
Q Consensus 145 --~--~~~~~~--p~---------l~~l-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~l~~ll~ 207 (208)
. .+..++ +. ...+ ..+.+. +..++...+.+++.++|+++++. . . .|+++.|++
T Consensus 158 ~~~~~vi~~~~G~~~~~~~~~~~~~~~~~~~~~P~--~~~~~~~~~~~~~~~~i~~r~~~-----~-~--~dll~~ll~ 226 (415)
T 2zwu_A 158 PFPIRIFMLLAGLPEEDIPHLKYLTDQMTRPDGSM--TFAEAKEALYDYLIPIIEQRRQK-----P-G--TDAISIVAN 226 (415)
T ss_dssp HHHHHHHHHHHTCCGGGHHHHHHHHHHHHSCCSSS--CHHHHHHHHHHHHHHHHHHHHHS-----C-C--SSHHHHHHT
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHH--HHHHHHHHHHHHHHHHHHHHHhC-----C-C--CCHHHHHHH
Confidence 1 000000 00 0000 000010 45567778888999999888763 1 2 578887764
No 36
>1s1f_A Putative cytochrome P450; cytochrome P450 oxidoreductase, CYP158A2, anti biosynthesis, oxidoreductase; HET: HEM PIM; 1.50A {Streptomyces coelicolor} SCOP: a.104.1.1 PDB: 1se6_A* 2d0e_A* 1t93_A* 2d09_A* 3tzo_A*
Probab=99.57 E-value=6.1e-15 Score=116.02 Aligned_cols=113 Identities=14% Similarity=0.131 Sum_probs=87.2
Q ss_pred CCCCCCCCCCccccccccCCCCCchHHHHHHHHhhCCeEEEEc-CCcC-EEEecCHHHHHHHHHHcCccCCCCCChHHHH
Q 040924 8 TKLPPGPWGLPFIGTLHQLDVSKPHVLFWELSKKYGPLMSLRL-GFSP-SLVVSSAKMAKEILKTHDLQFCSRPALVAQQ 85 (208)
Q Consensus 8 ~~~~pgp~~~p~~g~~~~~~~~~~~~~~~~~~~~yG~v~~~~~-~~~~-~v~i~dp~~~~~i~~~~~~~~~~~~~~~~~~ 85 (208)
.+.+|||+++|+.++. ..+++..+.++. +||||+++.+ ++.+ .++++||+.+++||.+ ..|.+++......
T Consensus 7 ~~~~~~~~~~p~~~~~----~~~p~~~~~~l~-~~Gpv~~~~~~~g~~p~~vv~~~~~v~~vl~~--~~f~~~~~~~~~~ 79 (406)
T 1s1f_A 7 SQAVPPVRDWPAVDLP----GSDFDPVLTELM-REGPVTRISLPNGEGWAWLVTRHDDVRLVTND--PRFGREAVMDRQV 79 (406)
T ss_dssp -CCSCCEEECCCCCCC----TTCCCHHHHHHH-HHCSEEEEECSBSBSCEEEECSHHHHHHHHTC--TTEESTTTTTTTB
T ss_pred hhhccCCCCCCCCccc----ccCchHHHHHHH-hcCCeeeeccCCCcccEEEEcCHHHHHHHHcC--CCccCCcCCCCCc
Confidence 3567888878887772 577888888885 7999999986 5666 9999999999999975 3566554321111
Q ss_pred ----H-hhcCCcceeeCCCChHHHHHHHHHHHHhhccccccccccHHHH
Q 040924 86 ----K-LSYNGLDLAFSPYDEYWREIRKICAIHLFNSNRGQNFRPIEKM 129 (208)
Q Consensus 86 ----~-~~~~~~~l~~~~~g~~w~~~Rk~l~~~~f~~~~l~~~~~~~~~ 129 (208)
. ....+.|+++++ |+.|+++|++++ ++|+.+.++.+.+.+.+
T Consensus 80 ~~~~~~~~~~~~~l~~~d-g~~h~~~R~~~~-~~fs~~~l~~~~~~i~~ 126 (406)
T 1s1f_A 80 TRLAPHFIPARGAVGFLD-PPDHTRLRRSVA-AAFTARGVERVRERSRG 126 (406)
T ss_dssp CBSSSSCSSCTTSGGGCC-TTHHHHHHHHHH-HHHSHHHHHHHHHHHHH
T ss_pred ccccccccccccccccCC-chHHHHHHHHHH-HhhCHHHHHHHHHHHHH
Confidence 1 111367888887 999999999999 99999999999998887
No 37
>3oo3_A OXY protein; cytochrome P450, monooxygenase, PCD-teicoplanin aglycone, oxidoreductase; HET: HEM; 2.20A {Actinoplanes teichomyceticus} SCOP: a.104.1.0 PDB: 3o1a_A*
Probab=99.57 E-value=1.5e-14 Score=112.95 Aligned_cols=167 Identities=16% Similarity=0.116 Sum_probs=107.8
Q ss_pred CCCchHHHHHHHHhhCCeEEEEcCC----cCEEEecCHHHHHHHHHHcCccCCCCCChHHHHHhhcCCcceeeCCCChHH
Q 040924 28 VSKPHVLFWELSKKYGPLMSLRLGF----SPSLVVSSAKMAKEILKTHDLQFCSRPALVAQQKLSYNGLDLAFSPYDEYW 103 (208)
Q Consensus 28 ~~~~~~~~~~~~~~yG~v~~~~~~~----~~~v~i~dp~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~w 103 (208)
..+++..+.++ ++||||+++++++ .+.|+++||+.+++|+. +...|.+++...........+.++++.+ |+.|
T Consensus 11 ~~~p~~~~~~l-r~yGpv~~~~~~~~~~g~~~vvv~~~~~v~~vl~-~~~~f~~~~~~~~~~~~~~~~~~~~~~~-g~~~ 87 (384)
T 3oo3_A 11 RLDPVPEFEEL-QKAGPLHEYDTEPGMDGRKQWLVTGHDEVRAILA-DHERFSSMRPVDDEADRALLPGILQAYD-PPDH 87 (384)
T ss_dssp TTEECHHHHHH-HHTCSEECCCCC------CEEEECCHHHHHHHHH-CTTTEECSCCCC-----CCCTTCGGGCC-TTHH
T ss_pred ccChhHHHHHH-HhcCCeeecccccccCCCCEEEEcCHHHHHHHHh-CchhccCCccccccccccccccccccCC-ChhH
Confidence 46888999888 5999999998876 89999999999999994 4567877764332222222345667676 9999
Q ss_pred HHHHHHHHHHhhccccccccccHHHH---HHHHHhc--C-hhHHHHHh----------hhcc--------cccccccccc
Q 040924 104 REIRKICAIHLFNSNRGQNFRPIEKM---NLIHQQA--S-RPLFVELV----------LARG--------YFPFIGWIDK 159 (208)
Q Consensus 104 ~~~Rk~l~~~~f~~~~l~~~~~~~~~---~~l~~~~--~-~~~~~~~~----------~~~~--------~~p~l~~l~~ 159 (208)
+++|++++ ++|+.+.++.+.+.+.+ +.++.+. + .-++...+ ..+. +..++..+..
T Consensus 88 ~~~R~~~~-~~fs~~~l~~~~~~i~~~~~~l~~~l~~~~~~~d~~~~~~~~~~~~v~~~~~G~~~~~~~~~~~~~~~~~~ 166 (384)
T 3oo3_A 88 TRLRRTVA-PAYSARRMERLRPRIEEIVEECLDDFESVGAPVDFVRHAAWPIPAYIACEFLGVPRDDQAELSRMIRESRE 166 (384)
T ss_dssp HHHHHHHG-GGGCHHHHHHHHHHHHHHHHHHHHHHHHSCSSEEHHHHTTTHHHHHHHHHHHTCCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHH-HhhCHHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhc
Confidence 99999999 99999999999998888 3333331 2 11111111 0000 0011111100
Q ss_pred ccchhhhhhhhHHHHHHHHHHHHHHhhcccccchhccccccHHHhhhc
Q 040924 160 LTGMLQRPQNNFQEIDRVYQELIDKHLDPNRAKIEQLQQEDVIDVLLQ 207 (208)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~l~~ll~ 207 (208)
....++..++...+.+++.++|+++++. . . .|+++.|++
T Consensus 167 -~~~~~~~~~~~~~~~~~~~~~i~~~~~~-----~-~--~d~l~~ll~ 205 (384)
T 3oo3_A 167 -SRLPRQRTLSGLGIVNYTKRLTSGKRRD-----P-G--DGMIGVIVR 205 (384)
T ss_dssp -CSCHHHHHHHHHHHHHHHHHHHHHHHHS-----C-C--SSHHHHHHH
T ss_pred -cCChHHHHHHHHHHHHHHHHHHHHHHhC-----C-C--CCHHHHHHH
Confidence 1234556677888899999999887653 1 2 688887764
No 38
>3b6h_A Prostacyclin synthase; enzyme-inhibitor complex, CYP8A1, cytochrome P450, endoplasmic reticulum, fatty acid biosynthesis, heme, iron, isomerase; HET: BOG MXD HEM; 1.62A {Homo sapiens} PDB: 2iag_A*
Probab=99.56 E-value=1.4e-15 Score=122.41 Aligned_cols=118 Identities=9% Similarity=0.075 Sum_probs=87.4
Q ss_pred CCCCCCCCCCCCC-CccccccccCCCCCchHHHHHHHHhhCCeEEEEcCCcCEEEecCHHHHHHHHHHcCccCCCCCCh-
Q 040924 4 SRNNTKLPPGPWG-LPFIGTLHQLDVSKPHVLFWELSKKYGPLMSLRLGFSPSLVVSSAKMAKEILKTHDLQFCSRPAL- 81 (208)
Q Consensus 4 ~~~~~~~~pgp~~-~p~~g~~~~~~~~~~~~~~~~~~~~yG~v~~~~~~~~~~v~i~dp~~~~~i~~~~~~~~~~~~~~- 81 (208)
.++..+.||||++ +|++||++.+ ..+++..+.+++++||+||++++++.++|+++||+++++|+..+...+..++..
T Consensus 13 ~~~~~~~PPgp~~~~P~iG~~~~~-~~~~~~~~~~l~~kYG~i~~v~lg~~~~vvv~~p~~~~~il~~~~~~~~~~~~~~ 91 (498)
T 3b6h_A 13 RTRRPGEPPLDLGSIPWLGYALDF-GKDAASFLTRMKEKHGDIFTILVGGRYVTVLLDPHSYDAVVWEPRTRLDFHAYAI 91 (498)
T ss_dssp CCCCTTCCCEECCSSTTTBTHHHH-HHCHHHHHHHHHHHHCSEEEEEETTEEEEEECCGGGHHHHHTCCTTTEECCHHHH
T ss_pred hccCCCCCCCCCCCCcchhhHHHh-ccCHHHHHHHHHHHcCCeEEEEECCeeEEEEcCHHHHHHHHhCccccCCchhhHH
Confidence 3456678999998 8999999888 567899999999999999999999999999999999999997654323323211
Q ss_pred HHHHHhhcCCcceeeCCCChHHHHHHHHHHHHhhccccccccccHHHH
Q 040924 82 VAQQKLSYNGLDLAFSPYDEYWREIRKICAIHLFNSNRGQNFRPIEKM 129 (208)
Q Consensus 82 ~~~~~~~~~~~~l~~~~~g~~w~~~Rk~l~~~~f~~~~l~~~~~~~~~ 129 (208)
..... ..|.|+++++ |+.| |+++. ++|+.+.++.+.+.+.+
T Consensus 92 ~~~~~--~~g~~~~~~~-~~~~---rr~~~-~~~~~~~l~~~~~~~~~ 132 (498)
T 3b6h_A 92 FLMER--IFDVQLPHYS-PSDE---KARMK-LTLLHRELQALTEAMYT 132 (498)
T ss_dssp HHHHH--TSCCCCTTCC-HHHH---HHHHH-TTSSHHHHHHHHHHHHH
T ss_pred HHHHH--HcCCCccccC-HHHH---HHHHH-HhhchHhHHHHHHHHHH
Confidence 11121 2356666666 7776 45666 78888888777655554
No 39
>3ejb_B Biotin biosynthesis cytochrome P450-like enzyme; protein-protein complex, cytochrome P450 fold, carrier protein, 4-helix bundle, cytoplasm; HET: ZMP HTG HEM; 2.00A {Bacillus subtilis} SCOP: a.104.1.0 PDB: 3ejd_B* 3eje_B*
Probab=99.56 E-value=1.1e-13 Score=108.71 Aligned_cols=166 Identities=17% Similarity=0.165 Sum_probs=109.3
Q ss_pred CCchHHHHHHHHhhCCeEEEEcCCcCEEEecCHHHHHHHHHHcCccCCCCCChHH----HHHhhcCCcceeeCCCChHHH
Q 040924 29 SKPHVLFWELSKKYGPLMSLRLGFSPSLVVSSAKMAKEILKTHDLQFCSRPALVA----QQKLSYNGLDLAFSPYDEYWR 104 (208)
Q Consensus 29 ~~~~~~~~~~~~~yG~v~~~~~~~~~~v~i~dp~~~~~i~~~~~~~~~~~~~~~~----~~~~~~~~~~l~~~~~g~~w~ 104 (208)
.+++..+.++ ++||||+++++++.+.++++||+.+++|+.+. +.|.+++.... .......+.++++++ |+.|+
T Consensus 13 ~~p~~~~~~~-r~yGpv~~~~~~~~~~vvv~~~~~v~~vl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-g~~h~ 89 (404)
T 3ejb_B 13 KNPYSFYDTL-RAVHPIYKGSFLKYPGWYVTGYEETAAILKDA-RFKVRTPLPESSTKYQDLSHVQNQMMLFQN-QPDHR 89 (404)
T ss_dssp HCHHHHHHHH-HHHCSEEEEEETTEEEEEECCHHHHHHHHHCT-TEECCCSSCTTCCTTHHHHHHHHTSGGGCC-TTHHH
T ss_pred cCchHHHHHH-HhhCCEeeccCCCCCEEEEecHHHHHHHHhCc-ccccCcccccccccccchhhhhhcchhhcC-CchHH
Confidence 5778888877 58999999999999999999999999999865 56766653111 000111246888887 99999
Q ss_pred HHHHHHHHHhhccccccccccHHHH---HHHHHhcC------hhHHHHHh------hhc--------cccccccc----c
Q 040924 105 EIRKICAIHLFNSNRGQNFRPIEKM---NLIHQQAS------RPLFVELV------LAR--------GYFPFIGW----I 157 (208)
Q Consensus 105 ~~Rk~l~~~~f~~~~l~~~~~~~~~---~~l~~~~~------~~~~~~~~------~~~--------~~~p~l~~----l 157 (208)
++|++++ ++|+.+.++.+.+.+.+ +.++...+ ..++...+ .++ .+..+... +
T Consensus 90 ~~Rr~~~-~~fs~~~l~~~~~~i~~~~~~ll~~l~~~~~~d~~~~~~~~~~~~vi~~~~G~~~~~~~~~~~~~~~~~~~~ 168 (404)
T 3ejb_B 90 RLRTLAS-GAFTPRTTESYQPYIIETVHHLLDQVQGKKKMEVISDFAFPLASFVIANIIGVPEEDREQLKEWAASLIQTI 168 (404)
T ss_dssp HHHHHHH-GGGSHHHHHTTHHHHHHHHHHHHHTTTTTSEEEHHHHTHHHHHHHHHHHHHTCCGGGHHHHHHHHHHHHGGG
T ss_pred HHHHHHH-hhcCHHHHHHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhc
Confidence 9999999 99999999999998888 34444321 11111111 000 00001000 0
Q ss_pred --ccccchhhhhhhhHHHHHHHHHHHHHHhhcccccchhccccccHHHhhh
Q 040924 158 --DKLTGMLQRPQNNFQEIDRVYQELIDKHLDPNRAKIEQLQQEDVIDVLL 206 (208)
Q Consensus 158 --~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~l~~ll 206 (208)
+......++..++...+.+++.++|+++++. . . .|+++.|+
T Consensus 169 ~~p~~~~~~~~~~~~~~~~~~~~~~~i~~r~~~-----~-~--~d~l~~ll 211 (404)
T 3ejb_B 169 DFTRSRKALTEGNIMAVQAMAYFKELIQKRKRH-----P-Q--QDMISMLL 211 (404)
T ss_dssp STTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHS-----C-C--SSHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----C-c--chHHHHHH
Confidence 1111234566677888899999999888743 1 2 57777775
No 40
>4fb2_A P450CIN; heme, monooxygenase, cindoxin, oxidoreductase; HET: HEM EDO; 1.37A {Citrobacter braakii} PDB: 4fmx_A* 4fyz_A* 1t2b_A* 3bdz_A* 3be0_A*
Probab=99.54 E-value=1.7e-14 Score=113.12 Aligned_cols=167 Identities=16% Similarity=0.188 Sum_probs=108.7
Q ss_pred CCCchHHHHHHHHhh--CCeEEEEcCCcCEEEecCHHHHHHHHHHcCccCCCCCChHHHHHhhcCCcceeeCCCChHHHH
Q 040924 28 VSKPHVLFWELSKKY--GPLMSLRLGFSPSLVVSSAKMAKEILKTHDLQFCSRPALVAQQKLSYNGLDLAFSPYDEYWRE 105 (208)
Q Consensus 28 ~~~~~~~~~~~~~~y--G~v~~~~~~~~~~v~i~dp~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~w~~ 105 (208)
..+++..+.+++++| |||+++.+++ +.++++||+.+++|+. +.+.|.+++..........++.++++++ |+.|++
T Consensus 18 ~~~p~~~~~~l~~~Y~~Gpv~~~~~~~-~~~vv~~~~~v~~vl~-~~~~f~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~ 94 (398)
T 4fb2_A 18 DGTPHAFFEALRDEAETTPIGWSEAYG-GHWVVAGYKEIQAVIQ-NTKAFSNKGVTFPRYETGEFELMMAGQD-DPVHKK 94 (398)
T ss_dssp TSSSHHHHHHHHHHHTTCSEEEECGGG-CEEEECSHHHHHHHHT-CCSSEEGGGCSSSCC----CCCTTTTCC-TTHHHH
T ss_pred hcChhHHHHHHHhcCCCCCeEEecCCC-CEEEEccHHHHHHHHh-ChhhccCCcccccCCCCcccccCcccCC-chHHHH
Confidence 578999999999999 9999998875 5899999999999994 4556766653222111122344566676 999999
Q ss_pred HHHHHHHHhhccccccccccHHHH---HHHHHhcC--h----hHHH-----HHh-hhcc--------ccccccccccccc
Q 040924 106 IRKICAIHLFNSNRGQNFRPIEKM---NLIHQQAS--R----PLFV-----ELV-LARG--------YFPFIGWIDKLTG 162 (208)
Q Consensus 106 ~Rk~l~~~~f~~~~l~~~~~~~~~---~~l~~~~~--~----~~~~-----~~~-~~~~--------~~p~l~~l~~~~~ 162 (208)
+|++++ ++|+.+.++.+.+.+.+ +.++.+.. . .++. .++ ..+. +..+...+.. +.
T Consensus 95 ~R~~~~-~~f~~~~l~~~~~~i~~~~~~l~~~l~~~~~~d~~~~~~~~~~~~vi~~~~G~~~~~~~~~~~~~~~~~~-~~ 172 (398)
T 4fb2_A 95 YRQLVA-KPFSPEATDLFTEQLRQSTNDLIDARIELGEGDAATWLANEIPARLTAILLGLPPEDGDTYRRWVWAITH-VE 172 (398)
T ss_dssp HHHHHH-TTTCHHHHHTTHHHHHHHHHHHHHTTTTTTEEEHCCCCCTTHHHHHHHHHTTSCGGGHHHHHHHHHHHHH-CC
T ss_pred HHHHHH-HhhCHHHHHHHHHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhc-CC
Confidence 999999 99999999999998888 44444331 0 0110 000 0000 0011111100 11
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHhhcccccchhccccccHHHhhhc
Q 040924 163 MLQRPQNNFQEIDRVYQELIDKHLDPNRAKIEQLQQEDVIDVLLQ 207 (208)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~l~~ll~ 207 (208)
..++..++...+.+++.++|+++++.. . .|+++.|++
T Consensus 173 ~~~~~~~~~~~~~~~~~~~i~~r~~~~------~--~d~l~~ll~ 209 (398)
T 4fb2_A 173 NPEEGAEIFAELVAHARTLIAERRTNP------G--NDIMSRVIM 209 (398)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHSC------C--SSHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhCC------C--CCHHHHHHH
Confidence 123566777888999999998887641 2 577777764
No 41
>3b98_A Prostaglandin I2 synthase; prostacyclin synthase, cytochrome P450 8A1, CYP8A1, isomerase; HET: HEM; 2.08A {Danio rerio} PDB: 3b99_A*
Probab=99.54 E-value=1.5e-15 Score=121.58 Aligned_cols=117 Identities=13% Similarity=0.118 Sum_probs=88.9
Q ss_pred CCCCCCCCCCCCC-CccccccccCCCCCchHHHHHHHHhhCCeEEEEcCCcCEEEecCHHHHHHHHHHcCccCCCCCCh-
Q 040924 4 SRNNTKLPPGPWG-LPFIGTLHQLDVSKPHVLFWELSKKYGPLMSLRLGFSPSLVVSSAKMAKEILKTHDLQFCSRPAL- 81 (208)
Q Consensus 4 ~~~~~~~~pgp~~-~p~~g~~~~~~~~~~~~~~~~~~~~yG~v~~~~~~~~~~v~i~dp~~~~~i~~~~~~~~~~~~~~- 81 (208)
.+++.+.||||++ +|++||++.+ ..+++..+.+++++||||+++++++.++++++||+.+++|+.+... +..++..
T Consensus 13 ~~~~~~~pPgp~~~~P~iG~~~~~-~~~~~~~~~~l~~~yG~v~~~~~g~~~~vvv~~~~~~~~il~~~~~-~~~~~~~~ 90 (475)
T 3b98_A 13 RTRRRNEPPLDKGMIPWLGHALEF-GKDAAKFLTRMKEKHGDIFTVRAAGLYITVLLDSNCYDAVLSDVAS-LDQTSYAQ 90 (475)
T ss_dssp CCCCTTCCCEECCSSTTTBTHHHH-HHCHHHHHHHHHHHHCSEEEEEETTEEEEEECCTTTHHHHHTCTTT-EESHHHHH
T ss_pred cccCCCCCCCCCCCcchHHhHHHH-hhCHHHHHHHHHHHhCCeEEEEECCceEEEEeCHHHHHHHHcCccc-CCchHHHH
Confidence 3445678999998 8999999887 6688999999999999999999999999999999999999965432 3222211
Q ss_pred HHHHHhhcCCcceeeCCCChHHHHHHHHHHHHhhccccccccccHHHH
Q 040924 82 VAQQKLSYNGLDLAFSPYDEYWREIRKICAIHLFNSNRGQNFRPIEKM 129 (208)
Q Consensus 82 ~~~~~~~~~~~~l~~~~~g~~w~~~Rk~l~~~~f~~~~l~~~~~~~~~ 129 (208)
..... ..|.|+++++ |+.| |+++. ++|+.+.++.+.+.+.+
T Consensus 91 ~~~~~--~~g~~~~~~~-~~~~---R~~~~-~~f~~~~l~~~~~~~~~ 131 (475)
T 3b98_A 91 VLMKR--IFNMILPSHN-PESE---KKRAE-MHFQGASLTQLSNSMQN 131 (475)
T ss_dssp HHHHH--TTCCCCTTCC-HHHH---HHHHH-HHTSHHHHHHHHHHHHH
T ss_pred HHHHH--HhCCCCCCCC-hHHH---HHHHH-HHcChhhHHHHHHHHHH
Confidence 11121 1356677666 7765 57777 89999888888777666
No 42
>3abb_A CYP105D6, cytochrome P450 hydroxylase; oxidoreductase, heme, monooxygenase, macrolide, filipi metal-binding; HET: HEM; 2.30A {Streptomyces avermitilis}
Probab=99.52 E-value=2.9e-14 Score=112.21 Aligned_cols=97 Identities=15% Similarity=0.161 Sum_probs=74.2
Q ss_pred CCCchHHHHHHHHhhCCeEEEEc-CCcCEEEecCHHHHHHHHHHcCccCCCCCC---hHH---HHHh-hcCCcceeeCCC
Q 040924 28 VSKPHVLFWELSKKYGPLMSLRL-GFSPSLVVSSAKMAKEILKTHDLQFCSRPA---LVA---QQKL-SYNGLDLAFSPY 99 (208)
Q Consensus 28 ~~~~~~~~~~~~~~yG~v~~~~~-~~~~~v~i~dp~~~~~i~~~~~~~~~~~~~---~~~---~~~~-~~~~~~l~~~~~ 99 (208)
..+++..+.+| ++||||+++++ ++.++|+++||+.+++||.++ .|.+++. +.. .... ...+.++++++
T Consensus 23 ~~~p~~~~~~l-~~yGpv~~~~~~g~~~~vvv~~~~~v~~vl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~- 98 (408)
T 3abb_A 23 PYQPPKAYEER-RGESPLTQVTLFDGRPAWLITGHAEGRALLVDP--RLSSDWGHPDFPVVVRRTEDRGGLAFPLIGVD- 98 (408)
T ss_dssp TTSCCHHHHHH-CCSSSEEEEECTTSCEEEEECCHHHHHHHHTCT--TEECCTTSTTCCCCC---------CCTTTTCC-
T ss_pred ccCchHHHHHH-HhcCCeeeeecCCCCcEEEEeCHHHHHHHHcCC--CcccccccccccccccCCccccccccccccCC-
Confidence 57889999999 89999999997 788999999999999999753 2333322 110 1110 00234788776
Q ss_pred ChHHHHHHHHHHHHhhccccccccccHHHH
Q 040924 100 DEYWREIRKICAIHLFNSNRGQNFRPIEKM 129 (208)
Q Consensus 100 g~~w~~~Rk~l~~~~f~~~~l~~~~~~~~~ 129 (208)
|+.|+++|++++ ++|+.+.++.+.+.+.+
T Consensus 99 g~~h~~~R~~~~-~~fs~~~l~~~~~~i~~ 127 (408)
T 3abb_A 99 DPVHARQRRMLI-PSFGVKRMNAIRPRLQS 127 (408)
T ss_dssp TTHHHHHHHHHG-GGGCHHHHHHHHHHHHH
T ss_pred chHHHHHHHHhh-hhcCHHHHHHHHHHHHH
Confidence 999999999999 99999999999998887
No 43
>3r9b_A Cytochrome P450 164A2; monooxygenase, oxidoreductase; HET: HEM D12; 1.89A {Mycobacterium smegmatis} PDB: 3r9c_A*
Probab=99.52 E-value=2e-13 Score=107.72 Aligned_cols=162 Identities=15% Similarity=0.144 Sum_probs=107.3
Q ss_pred CCCchHHHHHHHHhhCCeEEEEcCCcCEEEecCHHHHHHHHHHcCccCCCCCChHHHHHhh--------cCCcceeeCCC
Q 040924 28 VSKPHVLFWELSKKYGPLMSLRLGFSPSLVVSSAKMAKEILKTHDLQFCSRPALVAQQKLS--------YNGLDLAFSPY 99 (208)
Q Consensus 28 ~~~~~~~~~~~~~~yG~v~~~~~~~~~~v~i~dp~~~~~i~~~~~~~~~~~~~~~~~~~~~--------~~~~~l~~~~~ 99 (208)
..+++..+.++ ++||||+++.+| .++|++|+.+++|+.+. ..+.+++......... ..+.++++++
T Consensus 28 ~~~p~~~~~~l-r~~gpv~~~~~g---~~vv~~~~~v~~vl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d- 101 (418)
T 3r9b_A 28 RADPYPIYDRI-RRGGPLALPEAN---LAVFSSFSDCDDVLRHP-SSCSDRTKSTIFQRQLAAETQPRPQGPASFLFLD- 101 (418)
T ss_dssp TTCCHHHHHHH-HHHCCEEEGGGT---EEEECSHHHHHHHHHCT-TEECCGGGCHHHHHHHC---------CCCGGGCC-
T ss_pred ccCchHHHHHH-HhcCCEEECCCC---eEEEecHHHHHHHHcCc-ccccCcccccccccccccccccccccccchhhcC-
Confidence 47888888888 578999988665 99999999999999653 3444444322222221 2356888888
Q ss_pred ChHHHHHHHHHHHHhhccccccccccHHHH---HHHHHhc--C----hhH-----------------------HHHHh-h
Q 040924 100 DEYWREIRKICAIHLFNSNRGQNFRPIEKM---NLIHQQA--S----RPL-----------------------FVELV-L 146 (208)
Q Consensus 100 g~~w~~~Rk~l~~~~f~~~~l~~~~~~~~~---~~l~~~~--~----~~~-----------------------~~~~~-~ 146 (208)
|+.|+++|++++ ++|+.+.++.+.+.+.+ +.++ .. + ..+ +.... .
T Consensus 102 g~~h~~~R~~~~-~~fs~~~l~~~~~~i~~~~~~ll~-l~~~~~~d~~~~~~~~~~~~vi~~~~G~~~~~~~~~~~~~~~ 179 (418)
T 3r9b_A 102 PPDHTRLRGLVS-KAFAPRVIKRLEPEITALVDQLLD-AVDGPEFNLIDNLAYPLPVAVICRLLGVPIEDEPKFSRASAL 179 (418)
T ss_dssp TTHHHHHHHHHH-GGGSHHHHGGGHHHHHHHHHHHHH-TCCSSEEEHHHHTTTHHHHHHHHHHHTCCGGGHHHHHHHHHH
T ss_pred CchHHHHHHHhh-hhhCHHHHHHHHHHHHHHHHHHHh-hhccCCeehHHHHhCcCCHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 999999999999 99999999999999888 4444 42 1 001 11111 0
Q ss_pred h---ccccccccccccccchhhhhhhhHHHHHHHHHHHHHHhhcccccchhccccccHHHhhhc
Q 040924 147 A---RGYFPFIGWIDKLTGMLQRPQNNFQEIDRVYQELIDKHLDPNRAKIEQLQQEDVIDVLLQ 207 (208)
Q Consensus 147 ~---~~~~p~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~l~~ll~ 207 (208)
. .+.++.+.+++ ....++..++...+.+++.++|+++++.. . .|+++.|++
T Consensus 180 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~i~~r~~~~------~--~d~l~~ll~ 233 (418)
T 3r9b_A 180 LAAALDPFLALTGET--SDLFDEQMKAGMWLRDYLRALIDERRRTP------G--EDLMSGLVA 233 (418)
T ss_dssp HHHTTSCHHHHHSSC--CTTHHHHHHHHHHHHHHHHHHHHHTTTSC------C--SSHHHHHHH
T ss_pred HHhhcCccccccccC--HHHHHHHHHHHHHHHHHHHHHHHHHHhCC------C--ccHHHHHHH
Confidence 0 11111111111 23456777888889999999999887652 2 577777763
No 44
>3tkt_A Cytochrome P450; aromatic hydrocarbon binding of P450 E oxidoreductase; HET: HEM; 2.20A {Novosphingobium aromaticivorans}
Probab=99.51 E-value=6.4e-14 Score=111.59 Aligned_cols=165 Identities=15% Similarity=0.056 Sum_probs=104.8
Q ss_pred chHHHHHHHHhhCCeE--EEE-cCCcCEEEecCHHHHHHHHHHcCccCCCCCChHH-----HH----Hhh----cCCcce
Q 040924 31 PHVLFWELSKKYGPLM--SLR-LGFSPSLVVSSAKMAKEILKTHDLQFCSRPALVA-----QQ----KLS----YNGLDL 94 (208)
Q Consensus 31 ~~~~~~~~~~~yG~v~--~~~-~~~~~~v~i~dp~~~~~i~~~~~~~~~~~~~~~~-----~~----~~~----~~~~~l 94 (208)
++..+.++ ++||||+ ++. +++.+.++|++++.+++|+.+. ..|.+++.... .. ... ..+.++
T Consensus 47 p~~~~~~l-r~~gPV~~~~~~~~g~~~~~vvt~~~~v~~vl~~~-~~fs~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~l 124 (450)
T 3tkt_A 47 LLDRFDAL-RAEAPVAKVVAPDDEHEPFWLVSSFDGVMKASKDN-ATFLNNPKSTVFTLRVGEMMAKAITGGSPHLVESL 124 (450)
T ss_dssp HHHHHHHH-HHHCSEEEECCTTCSSCCEEEECSHHHHHHHHHCT-TTEESSSSCSSCCCHHHHHHHHHHHTSCSCSSCCG
T ss_pred chHHHHHH-HhcCCeecccccCCCCCCEEEEecHHHHHHHHhCc-ccccCCCccccccccccccccccccccccccccCc
Confidence 67777777 6799999 887 6778999999999999999654 56766643211 10 010 123578
Q ss_pred eeCCCChHHHHHHHHHHHHhhccccccccccHHHH---HHHHHh---cC----hhHH-----------------------
Q 040924 95 AFSPYDEYWREIRKICAIHLFNSNRGQNFRPIEKM---NLIHQQ---AS----RPLF----------------------- 141 (208)
Q Consensus 95 ~~~~~g~~w~~~Rk~l~~~~f~~~~l~~~~~~~~~---~~l~~~---~~----~~~~----------------------- 141 (208)
++++ |+.|+++|++++ ++|+.+.++.+.+.+.+ +.++.. .+ ..++
T Consensus 125 ~~~d-g~~h~~~R~~~~-~~fs~~~l~~~~~~i~~~~~~ll~~l~~~~~~~dl~~~~~~~~~~~vi~~l~G~~~~~~~~~ 202 (450)
T 3tkt_A 125 VQMD-APKHPKLRRLTQ-DWFMPKNLARLDGEIRKIANEAIDRMLGAGEEGDFMALVAAPYPLHVVMQILGVPPEDEPKM 202 (450)
T ss_dssp GGCC-TTHHHHHHHHHH-TTTSHHHHGGGHHHHHHHHHHHHHHHHHTCSEEEHHHHTTTHHHHHHHHHHTTCCGGGHHHH
T ss_pred ccCC-CHHHHHHHHHhh-hhhCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEeeHHHHHHHHHHHHHHHHcCCChhHHHHH
Confidence 8887 999999999999 99999999999998888 333322 11 0111
Q ss_pred HHHh-hhcc-----ccccccccccccchhhhhhhhHHHHHHHHHHHHHHhhcccccchhccccccHHHhhhc
Q 040924 142 VELV-LARG-----YFPFIGWIDKLTGMLQRPQNNFQEIDRVYQELIDKHLDPNRAKIEQLQQEDVIDVLLQ 207 (208)
Q Consensus 142 ~~~~-~~~~-----~~p~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~l~~ll~ 207 (208)
.+.. .... +.+++.++.......++..++...+.+++.++|+++++.. . .|+++.|++
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~r~~~~------~--~dll~~ll~ 266 (450)
T 3tkt_A 203 LFLTQQMFGGQDEDMNKSGLKDLPPEQISQIVAGAVAEFERYFAGLAAERRRNP------T--DDVATVIAN 266 (450)
T ss_dssp HHHHHTTSCCC----------------HHHHHHHHHHHHHHHHHHHHHHHHHSC------C--SSHHHHHHT
T ss_pred HHHHHHHhccccchhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhCC------C--CCHHHHHHh
Confidence 1111 0000 1111111110112346677788889999999999887642 2 577777764
No 45
>3aba_A Cytochrome P450; oxidoreductase, heme, monooxygenase, macrolide, filipi metal-binding, oxidoreductase-antibiotic complex; HET: HEM FLI; 1.80A {Streptomyces avermitilis} PDB: 3e5j_A* 3e5k_A* 3e5l_A*
Probab=99.50 E-value=1e-13 Score=108.97 Aligned_cols=167 Identities=13% Similarity=0.149 Sum_probs=106.7
Q ss_pred CCCchHHHHHHHHhhCCeEEEEc-CCcCEEEecCHHHHHHHHHHcCccCCCCCC--h-HHHHHhh--cCCcceeeCCCCh
Q 040924 28 VSKPHVLFWELSKKYGPLMSLRL-GFSPSLVVSSAKMAKEILKTHDLQFCSRPA--L-VAQQKLS--YNGLDLAFSPYDE 101 (208)
Q Consensus 28 ~~~~~~~~~~~~~~yG~v~~~~~-~~~~~v~i~dp~~~~~i~~~~~~~~~~~~~--~-~~~~~~~--~~~~~l~~~~~g~ 101 (208)
..+++..+.++ ++||||+++++ ++.+.++++||+.+++||.+. .|.+++. + .....+. ..+.++++++ |+
T Consensus 18 ~~~p~~~~~~l-~~yGpv~~~~~~g~~~~vvv~~~~~v~~vl~~~--~f~~~~~~~~~~~~~~~~~~~~~~~l~~~~-g~ 93 (403)
T 3aba_A 18 PFLPPDGIADI-RAAAPVTRATFTSGHEAWLVTGYEEVRALLRDS--SFSVQVPHALHTQDGVVTQKPGRGSLLWQD-EP 93 (403)
T ss_dssp TTSCCTTHHHH-HHHCSEEEEECTTSCEEEEECCHHHHHHHHHCT--TEESCCSCCTTSSSCCCCCCCCTTCCTTCC-TT
T ss_pred ccChhHHHHHH-HhcCCeeeeccCCCceEEEEcCHHHHHHHHcCC--CcccccccccccccccccccccccccccCC-ch
Confidence 46788888898 89999999997 788999999999999999753 4655531 1 1110011 1356788887 99
Q ss_pred HHHHHHHHHHHHhhccccccccccHHHH---HHHHHhc---C----hhHHHH-H----h-hhcc--------cccccccc
Q 040924 102 YWREIRKICAIHLFNSNRGQNFRPIEKM---NLIHQQA---S----RPLFVE-L----V-LARG--------YFPFIGWI 157 (208)
Q Consensus 102 ~w~~~Rk~l~~~~f~~~~l~~~~~~~~~---~~l~~~~---~----~~~~~~-~----~-~~~~--------~~p~l~~l 157 (208)
.|+++|++++ ++|+.+.++.+.+.+.+ +.++.+. + ..++.. + + .++. +..+...+
T Consensus 94 ~h~~~R~~~~-~~fs~~~l~~~~~~i~~~~~~ll~~l~~~~~~~d~~~~~~~~~~~~vi~~~~G~~~~~~~~~~~~~~~~ 172 (403)
T 3aba_A 94 EHTSDRKLLA-KEFTVRRMQALRPNIQRIVDEHLDAIEARGGPVDLVKTFANAVPSMVISDLFGVPVERRAEFQDIAEAM 172 (403)
T ss_dssp HHHHHHHHHH-HHSCHHHHHTTHHHHHHHHHHHHHHHHHHCSCEEHHHHTTTHHHHHHHHHHHTCCGGGHHHHHHHHHHH
T ss_pred hHHHHHHHHH-hhcCHHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 9999999999 99999999999998887 3333321 1 111111 1 0 0000 00011111
Q ss_pred ccccchhhhhhhhHHHHHHHHHHHHHHhhcccccchhccccccHHHhhhc
Q 040924 158 DKLTGMLQRPQNNFQEIDRVYQELIDKHLDPNRAKIEQLQQEDVIDVLLQ 207 (208)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~l~~ll~ 207 (208)
......-++..++...+.+++.++|+++++.. . .|+++.|++
T Consensus 173 ~~~~~~p~~~~~~~~~~~~~~~~~i~~r~~~~------~--~dll~~ll~ 214 (403)
T 3aba_A 173 MRVDQDAAATEAAGMRLGGLLYQLVQERRANP------G--DDLISALIT 214 (403)
T ss_dssp SBSSSCHHHHHHHHHHHHHHHHHHHHHHHHSC------C--SSHHHHHHT
T ss_pred HhccCcHHHHHHHHHHHHHHHHHHHHHHHhCC------C--CCHHHHHHh
Confidence 00000014566777788899999998887541 1 577777764
No 46
>3oft_A Cytochrome P450, CYP101C1; oxidoreductase; HET: HEM; 1.90A {Novosphingobium aromaticivorans} PDB: 3ofu_A*
Probab=99.50 E-value=8.7e-14 Score=109.02 Aligned_cols=166 Identities=10% Similarity=0.003 Sum_probs=109.4
Q ss_pred CCCchHHHHHHHHhhCCeEEEEcCCcCEEEecCHHHHHHHHHHcCccCCCCCChHHHHHhhcCCcceeeCCCChHHHHHH
Q 040924 28 VSKPHVLFWELSKKYGPLMSLRLGFSPSLVVSSAKMAKEILKTHDLQFCSRPALVAQQKLSYNGLDLAFSPYDEYWREIR 107 (208)
Q Consensus 28 ~~~~~~~~~~~~~~yG~v~~~~~~~~~~v~i~dp~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~w~~~R 107 (208)
..+++..+.+++++ |||+++..++ +.++++||+.+++|+.+. +.|.+++...........+.++++++ |+.|+++|
T Consensus 23 ~~~p~~~~~~l~~~-Gpv~~~~~~~-~~~vv~~~~~v~~vl~~~-~~f~~~~~~~~~~~~~~~~~~~~~~~-g~~h~~~R 98 (396)
T 3oft_A 23 EQDYFAAWKTLLDG-PGLVWSTANG-GHWIAARGDVVRELWGDA-ERLSSQCLAVTPGLGKVMQFIPLQQD-GAEHKAFR 98 (396)
T ss_dssp TTCHHHHHHGGGGS-CSEEEECSTT-SEEEECSHHHHHHHHHCT-TTEESTTCCSSTTHHHHHCCTTTTCC-HHHHHHHH
T ss_pred hcChHHHHHHHHhc-CCeeeecCCC-CEEEEcCHHHHHHHHcCc-ccccCCcccCCCccccccccCccccC-CcHHHHHH
Confidence 46889999999998 9999998764 588899999999999653 56766652111111111245677777 99999999
Q ss_pred HHHHHHhhccccccccccHHHH---HHHHHhc--ChhHHH-HH---h------hhcc--------ccccccccccccchh
Q 040924 108 KICAIHLFNSNRGQNFRPIEKM---NLIHQQA--SRPLFV-EL---V------LARG--------YFPFIGWIDKLTGML 164 (208)
Q Consensus 108 k~l~~~~f~~~~l~~~~~~~~~---~~l~~~~--~~~~~~-~~---~------~~~~--------~~p~l~~l~~~~~~~ 164 (208)
++++ ++|+.+.++.+.+.+.+ +.++.+. +..++. ++ + ..+. +..+...+.. ....
T Consensus 99 ~~~~-~~f~~~~l~~~~~~i~~~~~~l~~~l~~~~~~d~~~~~~~~~~~~v~~~~~G~~~~~~~~~~~~~~~~~~-~~~~ 176 (396)
T 3oft_A 99 TPVM-KGLASRFVVALEPKVQAVARKLMESLRPRGSCDFVSDFAEILPLNIFLTLIDVPLEDRPRLRQLGVQLTR-PDGS 176 (396)
T ss_dssp HHHH-HHTCHHHHHHHHHHHHHHHHHHHHHHGGGSEEEHHHHTTTTHHHHHHHHHTTCCGGGHHHHHHHHHHHHS-CCSS
T ss_pred HHhh-hhhCHHHHHHHHHHHHHHHHHHHHHhhhcCCccHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhC-CCCH
Confidence 9999 99999999999998887 4444442 211111 11 1 1000 0111111100 1124
Q ss_pred hhhhhhHHHHHHHHHHHHHHhhcccccchhccccccHHHhhhc
Q 040924 165 QRPQNNFQEIDRVYQELIDKHLDPNRAKIEQLQQEDVIDVLLQ 207 (208)
Q Consensus 165 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~l~~ll~ 207 (208)
++..++...+.+++.++|+++++.. . .|+++.|++
T Consensus 177 ~~~~~~~~~~~~~~~~~i~~r~~~~------~--~d~l~~ll~ 211 (396)
T 3oft_A 177 MTVEQLKQAADDYLWPFIEKRMAQP------G--DDLFSRILS 211 (396)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHSC------C--SSHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCC------C--CCHHHHHHH
Confidence 5667788889999999999887651 2 577777764
No 47
>3a4g_A Vitamin D hydroxylase; cytochrome P450, hemoprotein, monoox oxidoreductase; HET: HEM; 1.75A {Pseudonocardia autotrophica} PDB: 3a4h_A* 3a51_A* 3a4z_A* 3a50_A*
Probab=99.50 E-value=1.7e-13 Score=107.90 Aligned_cols=166 Identities=11% Similarity=0.152 Sum_probs=108.5
Q ss_pred CCCchHHHHHHHHhhCCeEEEEcCCcCEEEecCHHHHHHHHHHcCccCCCCCChHHH---H-Hhh-cCCcceeeCCCChH
Q 040924 28 VSKPHVLFWELSKKYGPLMSLRLGFSPSLVVSSAKMAKEILKTHDLQFCSRPALVAQ---Q-KLS-YNGLDLAFSPYDEY 102 (208)
Q Consensus 28 ~~~~~~~~~~~~~~yG~v~~~~~~~~~~v~i~dp~~~~~i~~~~~~~~~~~~~~~~~---~-~~~-~~~~~l~~~~~g~~ 102 (208)
..+++..+.++ ++||||+++++++.+.++++||+.+++||.+. .|.+++..... . .+. ..+.++++++ |+.
T Consensus 19 ~~~p~~~~~~l-~~yGpv~~~~~~~~~~vvv~~~~~v~~vl~~~--~f~~~~~~~~~~~~~~~~~~~~~~~l~~~~-g~~ 94 (411)
T 3a4g_A 19 WQNPHPAYAAL-RAEDPVRKLALPDGPVWLLTRYADVREAFVDP--RLSKDWRHTLPEDQRADMPATPTPMMILMD-PPD 94 (411)
T ss_dssp TTCCHHHHHHH-HHHCSEEEEEETTEEEEEECSHHHHHHHHTCT--TEESCGGGGSCGGGCTTCCSCSSCCGGGCC-TTH
T ss_pred hcCchHHHHHH-HhcCCeeeccCCCCCEEEEecHHHHHHHHhCC--CcccccccccccccccccCcccccccccCC-chH
Confidence 56789999999 89999999999888999999999999999764 27665432110 0 111 1357788887 999
Q ss_pred HHHHHHHHHHHhhccccccccccHHHH---HHHHHhc--ChhHHH-HHh---------hhcc--------cccccccccc
Q 040924 103 WREIRKICAIHLFNSNRGQNFRPIEKM---NLIHQQA--SRPLFV-ELV---------LARG--------YFPFIGWIDK 159 (208)
Q Consensus 103 w~~~Rk~l~~~~f~~~~l~~~~~~~~~---~~l~~~~--~~~~~~-~~~---------~~~~--------~~p~l~~l~~ 159 (208)
|+++|++++ ++|+.+.++.+.+.+.+ +.++.+. +.-++. ++. .++. +..+...+..
T Consensus 95 h~~~R~~~~-~~fs~~~l~~~~~~i~~~~~~l~~~l~~~~~vd~~~~~~~~~~~~vi~~~~G~~~~~~~~~~~~~~~~~~ 173 (411)
T 3a4g_A 95 HTRLRKLVG-RSFTVRRMNELEPRITEIADGLLAGLPTDGPVDLMREYAFQIPVQVICELLGVPAEDRDDFSAWSSVLVD 173 (411)
T ss_dssp HHHHHHHHH-TTCCHHHHHHHHHHHHHHHHHHHHHSCSSSCEEHHHHTTTTHHHHHHHHHHTCCGGGHHHHHHHHHHHTT
T ss_pred HHHHHHHhh-hhhCHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHhHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence 999999999 99999999999998888 4444443 111111 110 0000 0000000000
Q ss_pred ccchhhhhhhhHHHHHHHHHHHHHHhhcccccchhccccccHHHhhhc
Q 040924 160 LTGMLQRPQNNFQEIDRVYQELIDKHLDPNRAKIEQLQQEDVIDVLLQ 207 (208)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~l~~ll~ 207 (208)
..+ .++..++...+.+++.++|+++++.. . .|+++.|++
T Consensus 174 ~~p-~~~~~~~~~~~~~~~~~~i~~r~~~~------~--~d~l~~ll~ 212 (411)
T 3a4g_A 174 DSP-ADDKNAAMGKLHGYLSDLLERKRTEP------D--DALLSSLLA 212 (411)
T ss_dssp SSC-TTTHHHHHHHHHHHHHHHHHHHHHSC------C--SSHHHHHHH
T ss_pred cCC-HHHHHHHHHHHHHHHHHHHHHHHhCC------C--CCHHHHHHH
Confidence 000 13456677788899999998887541 1 577777764
No 48
>3tyw_A Putative cytochrome P450; P450 monooxygenase, oxidoreductase; HET: HEM; 2.90A {Streptomyces coelicolor} PDB: 4fxb_A*
Probab=99.50 E-value=1.2e-13 Score=108.90 Aligned_cols=167 Identities=11% Similarity=0.103 Sum_probs=109.9
Q ss_pred CCCchHHHHHHHHhhCCeEEEEcC-CcCEEEecCHHHHHHHHHHcCccCCCCCCh---HHHHHhh----cCCcceeeCCC
Q 040924 28 VSKPHVLFWELSKKYGPLMSLRLG-FSPSLVVSSAKMAKEILKTHDLQFCSRPAL---VAQQKLS----YNGLDLAFSPY 99 (208)
Q Consensus 28 ~~~~~~~~~~~~~~yG~v~~~~~~-~~~~v~i~dp~~~~~i~~~~~~~~~~~~~~---~~~~~~~----~~~~~l~~~~~ 99 (208)
..+++..+.++.++ |||++++++ +.+.++++||+.+++||.+. .|.+++.. ....... ..+.++++++
T Consensus 28 ~~dp~~~~~~l~~~-Gpv~~~~~~~g~~~~vv~~~~~v~~vl~~~--~f~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d- 103 (417)
T 3tyw_A 28 PFAAPAEYAALRTD-DPVARVTLPTRREAWVVTRYDDVRELLSDP--RVSADIRRPGFPALGEGEQEAGARFRPFIRTD- 103 (417)
T ss_dssp TTSCCTHHHHHHHT-CTEEEEECTTSCEEEEECCHHHHHHHHHCT--TEECCSSSTTCCCSSTTTSTTSSSCCCGGGCC-
T ss_pred ccCchHHHHHHHhh-CCeeeeecCCCCCeEEEcCHHHHHHHHcCC--CcccCCccccccccccccccccccccchhhcC-
Confidence 57889999999988 999999986 58999999999999999764 56554211 1111100 2357888887
Q ss_pred ChHHHHHHHHHHHHhhccccccccccHHHH---HHHHHhc--C-----hhHHHHHh------hhcc--------cccccc
Q 040924 100 DEYWREIRKICAIHLFNSNRGQNFRPIEKM---NLIHQQA--S-----RPLFVELV------LARG--------YFPFIG 155 (208)
Q Consensus 100 g~~w~~~Rk~l~~~~f~~~~l~~~~~~~~~---~~l~~~~--~-----~~~~~~~~------~~~~--------~~p~l~ 155 (208)
|+.|+++|++++ ++|+.+.++.+.+.+.+ +.++... + ...+...+ .++. +..+..
T Consensus 104 g~~h~~~R~~~~-~~fs~~~l~~~~~~i~~~~~~l~~~l~~~g~~~d~~~~~~~~~~~~vi~~~~G~~~~~~~~~~~~~~ 182 (417)
T 3tyw_A 104 APEHTRYRRMLL-PAFTVRRVRAMRPAVQARVDEILDGMLAAGGPVDLVSAYANAVSTSVICELLGIPRHDLEFFRDVTR 182 (417)
T ss_dssp HHHHHHHHHHHG-GGGCHHHHHHTHHHHHHHHHHHHHHHHHHCSSEEHHHHTHHHHHHHHHHHHHTCCTTTTTHHHHHHH
T ss_pred CcHHHHHHHHHH-hhhCHHHHHHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 999999999999 99999999999998888 3333321 2 11121111 1000 001111
Q ss_pred ccccccchhhhhhhhHHHHHHHHHHHHHHhhcccccchhccccccHHHhhhc
Q 040924 156 WIDKLTGMLQRPQNNFQEIDRVYQELIDKHLDPNRAKIEQLQQEDVIDVLLQ 207 (208)
Q Consensus 156 ~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~l~~ll~ 207 (208)
.+.......++..++...+.+++.++|+++++.. . .|+++.|++
T Consensus 183 ~~~~~~~~~~~~~~~~~~l~~~~~~~i~~r~~~~------~--~d~l~~ll~ 226 (417)
T 3tyw_A 183 ISGSRNSTAEQVSEALGGLFGLLGGLVAERREEP------R--DDLISKLVT 226 (417)
T ss_dssp HHHSSSSCTTHHHHHHHHHHHHHHHHHHHHHSSC------C--SSHHHHHHH
T ss_pred HHhcccCCHHHHHHHHHHHHHHHHHHHHHHhhCC------C--CCHHHHHHH
Confidence 1110112345677788889999999999887642 1 577777653
No 49
>2z36_A MOXA, cytochrome P450 type compactin 3'',4''- hydroxylase; CYP105, oxidoreductase; HET: HEM MES; 2.80A {Nonomuraea recticatena}
Probab=99.49 E-value=2.1e-13 Score=107.43 Aligned_cols=184 Identities=16% Similarity=0.135 Sum_probs=112.4
Q ss_pred CCCCCCCCCCCCCccccccccCCCCCchHHHHHHHHhhCCeEEEEc-CCcCEEEecCHHHHHHHHHHcCccCCCCCChHH
Q 040924 5 RNNTKLPPGPWGLPFIGTLHQLDVSKPHVLFWELSKKYGPLMSLRL-GFSPSLVVSSAKMAKEILKTHDLQFCSRPALVA 83 (208)
Q Consensus 5 ~~~~~~~pgp~~~p~~g~~~~~~~~~~~~~~~~~~~~yG~v~~~~~-~~~~~v~i~dp~~~~~i~~~~~~~~~~~~~~~~ 83 (208)
++...-.+||.. |+- ..+ ..+++..+.++. +||||+++++ ++.+.|+++||+.+++||.+. .|.+++....
T Consensus 3 ~~~~~~~~g~~~-~~~---~~~-~~~p~~~~~~l~-~~Gpv~~~~~~g~~~~vvv~~~~~v~~vl~~~--~f~~~~~~~~ 74 (413)
T 2z36_A 3 KNVADELAGLEL-PVE---RGC-PFAPPAAYERLR-ERAPINKVRLTSGGQAWWVSGHEEARAVLADG--RFSSDKRKDG 74 (413)
T ss_dssp -------CCCEE-CCC---CCB-TTBCCHHHHHHH-HHCSEEEEEETTSCEEEEECSHHHHHHHHHCT--TEECCTTSTT
T ss_pred ccHHHHhccccC-CCC---ccc-ccCchHHHHHHH-HcCCeeEeecCCCceEEEEecHHHHHHHHcCC--CcccCccccC
Confidence 444555677773 432 223 467888898887 7899999997 788999999999999999753 5655542111
Q ss_pred H------HHhhc---CCcc-eeeCCCChHHHHHHHHHHHHhhccccccccccHHHH---HHHHHhc---C-hhHHHH-H-
Q 040924 84 Q------QKLSY---NGLD-LAFSPYDEYWREIRKICAIHLFNSNRGQNFRPIEKM---NLIHQQA---S-RPLFVE-L- 144 (208)
Q Consensus 84 ~------~~~~~---~~~~-l~~~~~g~~w~~~Rk~l~~~~f~~~~l~~~~~~~~~---~~l~~~~---~-~~~~~~-~- 144 (208)
. ..... .+.| +++++ |+.|+++|++++ ++|+.+.++.+.+.+.+ +.++.+. + .-++.. +
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~l~~~~-g~~h~~~R~~~~-~~fs~~~l~~~~~~i~~~~~~ll~~l~~~~~~~~d~~~~~~ 152 (413)
T 2z36_A 75 FPLFTLDAATLQQLRSQPPLMLGMD-GAEHSAARRPVI-GEFTVKRLAALRPRIQDIVDHFIDDMLATDQRPVDLVQALS 152 (413)
T ss_dssp CCCSSCCHHHHHHHTTSCCCGGGCC-HHHHHHHHHHHH-GGGSHHHHHHHHHHHHHHHHHHHHHHTTCSCSSEEHHHHTT
T ss_pred ccccccccccccccccccccccccC-chHHHHHHHHHH-HhhCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHh
Confidence 1 11110 2567 88887 999999999999 99999999999998888 3344432 2 111111 1
Q ss_pred --h------hhcc--------ccccccccccccchhhhhhhhHHHHHHHHHHHHHHhhcccccchhccccccHHHhhhc
Q 040924 145 --V------LARG--------YFPFIGWIDKLTGMLQRPQNNFQEIDRVYQELIDKHLDPNRAKIEQLQQEDVIDVLLQ 207 (208)
Q Consensus 145 --~------~~~~--------~~p~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~l~~ll~ 207 (208)
+ .++. +..+...+..... .++..++...+.+++.++|+++++.. . .|+++.|++
T Consensus 153 ~~~~~~vi~~~~G~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~r~~~~------~--~dll~~ll~ 222 (413)
T 2z36_A 153 LPVPSLVICELLGVPYTDHDFFQSRTTMMVSRTS-MEDRRRAFAELRAYIDDLITRKESEP------G--DDLFSRQIA 222 (413)
T ss_dssp THHHHHHHHHHHTCCGGGHHHHHHHHHHTTCSSC-HHHHHHHHHHHHHHHHHHHHHHHSSC------C--SSHHHHHHH
T ss_pred hhhHHHHHHHHhCCCHHHHHHHHHHHHHHhcccC-cHHHHHHHHHHHHHHHHHHHHHHhCC------C--CCHHHHHHH
Confidence 1 0000 0001111100001 14566777888999999998887641 1 577777663
No 50
>2jjn_A Cytochrome P450 113A1; oxidoreductase, iron, heme, monooxygenase, metal-binding, AN biosynthesis, TIE-ROD mechanism of action; HET: HEM; 1.59A {Saccharopolyspora erythraea} PDB: 2jjo_A* 2jjp_A* 2xfh_A* 2wio_A* 2vrv_A*
Probab=99.48 E-value=3.3e-13 Score=106.31 Aligned_cols=175 Identities=15% Similarity=0.108 Sum_probs=110.4
Q ss_pred CCCCCCCCCCCCccccccccCCCCCchHHHHHHHHhhCCeEEEEcCCcCEEEecCHHHHHHHHHHcCccCCCCCChHHHH
Q 040924 6 NNTKLPPGPWGLPFIGTLHQLDVSKPHVLFWELSKKYGPLMSLRLGFSPSLVVSSAKMAKEILKTHDLQFCSRPALVAQQ 85 (208)
Q Consensus 6 ~~~~~~pgp~~~p~~g~~~~~~~~~~~~~~~~~~~~yG~v~~~~~~~~~~v~i~dp~~~~~i~~~~~~~~~~~~~~~~~~ 85 (208)
++...+|||+. ..+++..+.++.+ |||| +.++.+.++++||+.+++|+.+. +.|.+++... ..
T Consensus 16 ~pl~~~PGp~~-----------~~~p~~~~~~l~~-~gpv---~~~~~~~~vv~~~~~v~~vl~~~-~~f~~~~~~~-~~ 78 (411)
T 2jjn_A 16 TTIDEVPGMAD-----------ETALLDWLGTMRE-KQPV---WQDRYGVWHVFRHADVQTVLRDT-ATFSSDPTRV-IE 78 (411)
T ss_dssp -CCCSCCCSSC-----------HHHHHHHHHHHHH-HCSE---EECTTSCEEECSHHHHHHHHHCT-TTEESCGGGG-ST
T ss_pred CCCCCCCCccc-----------ccChHHHHHHHHH-hCCc---ccCCCCeEEECCHHHHHHHHcCc-ccccCccccc-CC
Confidence 35566677761 2467788888876 9998 56667899999999999999754 4676665321 11
Q ss_pred HhhcCCcceeeCCCChHHHHHHHHHHHHhhccccccccccHHHH---HHHHHhcChhHHH-H----H----h-hhcc---
Q 040924 86 KLSYNGLDLAFSPYDEYWREIRKICAIHLFNSNRGQNFRPIEKM---NLIHQQASRPLFV-E----L----V-LARG--- 149 (208)
Q Consensus 86 ~~~~~~~~l~~~~~g~~w~~~Rk~l~~~~f~~~~l~~~~~~~~~---~~l~~~~~~~~~~-~----~----~-~~~~--- 149 (208)
.....+.++++++ |+.|+++|++++ ++|+.+.++.+.+.+.+ +.++...+..++. + + + ..+.
T Consensus 79 ~~~~~~~~~~~~~-g~~~~~~R~~~~-~~fs~~~l~~~~~~i~~~~~~ll~~~~~~~d~~~~~~~~~~~~vi~~~fG~~~ 156 (411)
T 2jjn_A 79 GASPTPGMIHEID-PPEHRALRKVVS-SAFTPRTISDLEPRIRDVTRSLLADAGESFDLVDVLAFPLPVTIVAELLGLPP 156 (411)
T ss_dssp TCCCCTTCGGGCC-TTHHHHHHHHHH-HHSCHHHHHTTHHHHHHHHHHHHHTSCSEEEHHHHTTTHHHHHHHHHHHTCCS
T ss_pred cccccccccccCC-chHHHHHHHHhh-hhcCHHHHHHHHHHHHHHHHHHHhcCCCceeHHHHHHHHHHHHHHHHHcCCCH
Confidence 1112356788887 999999999999 99999999999998887 3344311211111 1 1 0 0000
Q ss_pred -----ccccccc----c-c-cc-cchhhhhhhhHHHHHHHHHHHHHHhhcccccchhccccccHHHhhhc
Q 040924 150 -----YFPFIGW----I-D-KL-TGMLQRPQNNFQEIDRVYQELIDKHLDPNRAKIEQLQQEDVIDVLLQ 207 (208)
Q Consensus 150 -----~~p~l~~----l-~-~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~l~~ll~ 207 (208)
+..+... + + ++ +...++..++...+.+++.++|+++++. . . .|+++.|++
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~r~~~-----~-~--~d~l~~ll~ 218 (411)
T 2jjn_A 157 MDHEQFGDWSGALVDIQMDDPTDPALAERIADVLNPLTAYLKARCAERRAD-----P-G--DDLISRLVL 218 (411)
T ss_dssp CCCSTTCCHHHHHHHSCCSCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHS-----C-C--SSHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhC-----C-C--CCHHHHHHh
Confidence 0000000 0 0 00 1234556677788899999999888753 1 2 577777764
No 51
>2y5n_A MYCG, P-450-like protein; oxidoreductase, mycinamicin biosynthesis; HET: HEM MYV; 1.62A {Micromonospora griseorubida} PDB: 2y46_A* 2y5z_A* 2y98_A* 2yca_A* 2ygx_A*
Probab=99.46 E-value=2.9e-13 Score=106.81 Aligned_cols=167 Identities=16% Similarity=0.210 Sum_probs=106.8
Q ss_pred CCCchHHHHHHHHhhCCeEEEEc-CCcCEEEecCHHHHHHHHHHcCccCCCCCCh-HHHHHhh--cCCcceeeCCCChHH
Q 040924 28 VSKPHVLFWELSKKYGPLMSLRL-GFSPSLVVSSAKMAKEILKTHDLQFCSRPAL-VAQQKLS--YNGLDLAFSPYDEYW 103 (208)
Q Consensus 28 ~~~~~~~~~~~~~~yG~v~~~~~-~~~~~v~i~dp~~~~~i~~~~~~~~~~~~~~-~~~~~~~--~~~~~l~~~~~g~~w 103 (208)
..+++..+.++ ++||||+++++ ++.+.|+++||+.+++||.+. .|.+++.. .....+. ..+.++++++ |+.|
T Consensus 36 ~~~p~~~~~~l-~~yGpv~~~~~~g~~~~vvv~~~~~i~~vl~~~--~f~~~~~~~~~~~~~~~~~~~~~l~~~d-g~~h 111 (417)
T 2y5n_A 36 GLTLAGRYGEL-QETEPVSRVRPPYGEEAWLVTRYEDVRAVLGDG--RFVRGPSMTRDEPRTRPEMVKGGLLSMD-PPEH 111 (417)
T ss_dssp SCCCCHHHHHH-HHHCSEEEEECSBSCCEEEECSHHHHHHHHTCT--TEESGGGGTSCCCBSSSSCCCCSGGGCC-TTHH
T ss_pred ccCchHHHHHH-HhcCCeEeeccCCCceEEEECCHHHHHHHHcCC--CcccCccccccccccCcccccccCccCC-chHH
Confidence 46788999999 89999999997 788999999999999999753 35544321 1000011 1356788887 9999
Q ss_pred HHHHHHHHHHhhccccccccccHHHH---HHHHHhc--C-hhHHHH-H--------h-hhcc--------cccccccccc
Q 040924 104 REIRKICAIHLFNSNRGQNFRPIEKM---NLIHQQA--S-RPLFVE-L--------V-LARG--------YFPFIGWIDK 159 (208)
Q Consensus 104 ~~~Rk~l~~~~f~~~~l~~~~~~~~~---~~l~~~~--~-~~~~~~-~--------~-~~~~--------~~p~l~~l~~ 159 (208)
+++|++++ ++|+.+.++.+.+.+.+ +.++.+. + .-++.. + + .++. +..+...+..
T Consensus 112 ~~~R~~l~-~~fs~~~l~~~~~~i~~~~~~ll~~l~~~~~~vdl~~~~~~~~~~~vi~~~~G~~~~~~~~~~~~~~~~~~ 190 (417)
T 2y5n_A 112 SRLRRLVV-KAFTARRAESLRPRAREIAHELVDQMAATGQPADLVAMFARQLPVRVICELLGVPSADHDRFTRWSGAFLS 190 (417)
T ss_dssp HHHHHHHH-HHSCHHHHHHTHHHHHHHHHHHHHHHHHHCSSEEHHHHTTTTHHHHHHHHHHTCCGGGHHHHHHHHHTTST
T ss_pred HHHHHHHh-hhcCHHHHHHHHHHHHHHHHHHHHHHHhCCCCeeHHHHHHHHhHHHHHHHHcCCCHHHHHHHHHHHHHHhc
Confidence 99999999 99999999999998887 3333221 1 111111 0 0 0000 0001111100
Q ss_pred -ccchhhhhhhhHHHHHHHHHHHHHHhhcccccchhccccccHHHhhhc
Q 040924 160 -LTGMLQRPQNNFQEIDRVYQELIDKHLDPNRAKIEQLQQEDVIDVLLQ 207 (208)
Q Consensus 160 -~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~l~~ll~ 207 (208)
.....++..++...+.+++.++|+++++.. . .|+++.|++
T Consensus 191 ~~~~~~~~~~~~~~~l~~~~~~~i~~r~~~~------~--~dll~~ll~ 231 (417)
T 2y5n_A 191 TAEVTAEEMQEAAEQAYAYMGDLIDRRRKEP------T--DDLVSALVQ 231 (417)
T ss_dssp TCCCCHHHHHHHHHHHHHHHHHHHHHHHHSC------C--SSHHHHHHH
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHHHHHHhCC------C--CCHHHHHHh
Confidence 011124566777888999999998887541 1 577777764
No 52
>1z8o_A 6-deoxyerythronolide B hydroxylase; heme, CYP, erythromycin, oxidoreductase; HET: HEM DEB; 1.70A {Saccharopolyspora erythraea} SCOP: a.104.1.1 PDB: 1z8p_A* 1z8q_A* 1jio_A* 1jip_A* 1eup_A* 1egy_A* 1jin_A* 1oxa_A*
Probab=99.46 E-value=5.2e-13 Score=104.94 Aligned_cols=167 Identities=16% Similarity=0.213 Sum_probs=109.1
Q ss_pred CCCchHHHHHHHHhhCCeEEEEcCCcCEEEecCHHHHHHHHHHcCccCCCCCCh--H----------HH-HHh-hcCCcc
Q 040924 28 VSKPHVLFWELSKKYGPLMSLRLGFSPSLVVSSAKMAKEILKTHDLQFCSRPAL--V----------AQ-QKL-SYNGLD 93 (208)
Q Consensus 28 ~~~~~~~~~~~~~~yG~v~~~~~~~~~~v~i~dp~~~~~i~~~~~~~~~~~~~~--~----------~~-~~~-~~~~~~ 93 (208)
..+++..+.++ ++||||+++++++.+.++++||+.+++|+.+. .|.+++.. . .. ... ...+.+
T Consensus 13 ~~~p~~~~~~l-~~yGpv~~~~~~~~~~vvv~~~~~v~~vl~~~--~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (404)
T 1z8o_A 13 HVDWYRTYAEL-RETAPVTPVRFLGQDAWLVTGYDEAKAALSDL--RLSSDPKKKYPGVEVEFPAYLGFPEDVRNYFATN 89 (404)
T ss_dssp TSSHHHHHHHH-HHHCSEEEEEETTEEEEEECSHHHHHHHHHCT--TEECCTTCCCTTCCCCCGGGTTCCHHHHHHHSSS
T ss_pred ccCcHHHHHHH-HhcCCeeeecCCCceEEEEcCHHHHHHHHcCC--Cccccccccccccccccccccccccchhhhcccc
Confidence 46789999999 99999999999888899999999999999764 56655432 1 11 110 012567
Q ss_pred eeeCCCChHHHHHHHHHHHHhhccccccccccHHHH---HHHHHhc--Ch----hHHHH-H----h-hhcc--------c
Q 040924 94 LAFSPYDEYWREIRKICAIHLFNSNRGQNFRPIEKM---NLIHQQA--SR----PLFVE-L----V-LARG--------Y 150 (208)
Q Consensus 94 l~~~~~g~~w~~~Rk~l~~~~f~~~~l~~~~~~~~~---~~l~~~~--~~----~~~~~-~----~-~~~~--------~ 150 (208)
+++++ |+.|+++|++++ ++|+.+.++.+.+.+.+ +.++.+. +. .++.. + + .++. +
T Consensus 90 l~~~~-g~~h~~~R~~~~-~~fs~~~l~~~~~~i~~~~~~l~~~l~~~~~~d~~~~~~~~~~~~vi~~~~G~~~~~~~~~ 167 (404)
T 1z8o_A 90 MGTSD-PPTHTRLRKLVS-QEFTVRRVEAMRPRVEQITAELLDEVGDSGVVDIVDRFAHPLPIKVICELLGVDEKYRGEF 167 (404)
T ss_dssp GGGCC-TTHHHHHHHHHH-TTSCHHHHHHTHHHHHHHHHHHHHTSCSSSEEEHHHHTTTHHHHHHHHHHTTCCGGGTTTH
T ss_pred cccCC-CcHHHHHHHHHH-HhhCHHHHHHHHHHHHHHHHHHHHhhhhcCCcchHHHHhHHHHHHHHHHHhCCCHHHHHHH
Confidence 88887 999999999999 99999999999998887 4444432 11 11111 1 0 0000 0
Q ss_pred ccccccc-ccccchhhhhhhhHHHHHHHHHHHHHHhhcccccchhccccccHHHhhhc
Q 040924 151 FPFIGWI-DKLTGMLQRPQNNFQEIDRVYQELIDKHLDPNRAKIEQLQQEDVIDVLLQ 207 (208)
Q Consensus 151 ~p~l~~l-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~l~~ll~ 207 (208)
..+...+ ...++..++..++...+.+++.++|+++++.. . .|+++.|++
T Consensus 168 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~r~~~~------~--~dll~~ll~ 217 (404)
T 1z8o_A 168 GRWSSEILVMDPERAEQRGQAAREVVNFILDLVERRRTEP------G--DDLLSALIR 217 (404)
T ss_dssp HHHHHHHHCCCGGGHHHHHHHHHHHHHHHHHHHHHHHHSC------C--SSHHHHHHH
T ss_pred HHHHHHHhccCChhHHHHHHHHHHHHHHHHHHHHHHHhCC------C--CCHHHHHHh
Confidence 0000000 00001144566777788889999998877531 1 578877764
No 53
>3dsk_A Cytochrome P450 74A, chloroplast; P450 fold, fatty acid biosynthesis, heme, iron, synthesis, lyase, metal-binding, oxylipin biosynthesis; HET: HEM T25; 1.55A {Arabidopsis thaliana} PDB: 2rcm_A* 3dsj_A* 3dsi_A* 2rcl_A* 2rch_A* 3cli_A*
Probab=99.44 E-value=8.9e-14 Score=111.84 Aligned_cols=120 Identities=13% Similarity=0.154 Sum_probs=86.1
Q ss_pred CCCCCCCCCCCCCccccccccCC----CCCchHHHHHHHHhhCC-eEEEEcCCcCE-------EEecCHHHHHHHHHHcC
Q 040924 5 RNNTKLPPGPWGLPFIGTLHQLD----VSKPHVLFWELSKKYGP-LMSLRLGFSPS-------LVVSSAKMAKEILKTHD 72 (208)
Q Consensus 5 ~~~~~~~pgp~~~p~~g~~~~~~----~~~~~~~~~~~~~~yG~-v~~~~~~~~~~-------v~i~dp~~~~~i~~~~~ 72 (208)
..+.+.||||.++|++|++..+. ..+++.++.++.++||+ ||++++++.++ |++++++..+.++....
T Consensus 24 ~~p~~~pPGp~g~P~iG~~~~~~~~~~~~~~~~f~~~~~~kyG~~Vf~~~l~~~~~vv~~p~~v~~~~~~~~~~l~~~~~ 103 (495)
T 3dsk_A 24 DLPIRNIPGNYGLPIVGPIKDRWDYFYDQGAEEFFKSRIRKYNSTVYRVNMPPGAFIAENPQVVALLDGKSFPVLFDVDK 103 (495)
T ss_dssp CCCBCCCCCCCCSTTHHHHHHHHHHHTTSCHHHHHHHHHHHHTCSEEEEECSCCTTTCSCCEEEEECSTTTGGGGGCTTT
T ss_pred CCCCCCCCCCCCCCccchHHHHHHHHHhcCcHHHHHHHHHHhCCceEeecCCCCCCccCCCCEEEEeCCcceeeeccccc
Confidence 34677899999999999998774 47889999999999999 99999987776 66777777766663311
Q ss_pred ----ccCCCC-CChHHHHHhhc-CCcceeeCCCChHHHHHHHHHHHHhhccccccccccHHHH
Q 040924 73 ----LQFCSR-PALVAQQKLSY-NGLDLAFSPYDEYWREIRKICAIHLFNSNRGQNFRPIEKM 129 (208)
Q Consensus 73 ----~~~~~~-~~~~~~~~~~~-~~~~l~~~~~g~~w~~~Rk~l~~~~f~~~~l~~~~~~~~~ 129 (208)
+.+... +.. ...+.. ...+++..+ |+.|+++|++++ ++|+... +.+.+.+.+
T Consensus 104 v~k~~~~~~~~~~~--~~l~g~~~~~~~~~~~-g~~h~~~R~~~~-~~f~~~~-~~~~~~i~~ 161 (495)
T 3dsk_A 104 VEKKDLLTGTYMPS--TELTGGYRILSYLDPS-EPKHEKLKNLLF-FLLKSSR-NRIFPEFQA 161 (495)
T ss_dssp EECSSCTTSSSCCC--GGGGTTCCCGGGCCTT-SHHHHHHHHHHH-HHHHHTT-TTHHHHHHH
T ss_pred ccccccccccCCCC--ccccCCCcceeeeCCC-chHHHHHHHHHH-HHHHHHH-HHHHHHHHH
Confidence 112111 111 121111 124555566 999999999999 9999754 778888777
No 54
>3nc3_A Cytochrome P450 CYPX; cytochrome P450 oxidase, HAEM protein, oxidoreductase; HET: HEM; 2.66A {Bacillus subtilis} PDB: 3nc5_A* 3nc6_A* 3nc7_A*
Probab=99.44 E-value=2e-13 Score=108.55 Aligned_cols=164 Identities=16% Similarity=0.141 Sum_probs=93.9
Q ss_pred CCchHHHHHHHHhhCCeEEEEcCCcCEEEecCHHHHHHHHHHcCccCCCCCChHHHHHhhcCCcceeeCCCChHHHHHHH
Q 040924 29 SKPHVLFWELSKKYGPLMSLRLGFSPSLVVSSAKMAKEILKTHDLQFCSRPALVAQQKLSYNGLDLAFSPYDEYWREIRK 108 (208)
Q Consensus 29 ~~~~~~~~~~~~~yG~v~~~~~~~~~~v~i~dp~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~w~~~Rk 108 (208)
.+++..+.++ ++||||+++..++ .++|++|+.+++||.+.. .|.+++........ .++.++++++ |+.|+++|+
T Consensus 53 ~~p~~~~~~l-r~~gpv~~~~~~~--~~vv~~~~~v~~vl~~~~-~f~~~~~~~~~~~~-~~~~~l~~~d-g~~h~~~Rr 126 (441)
T 3nc3_A 53 NNPYAYFSQL-REEDPVHYEESID--SYFISRYHDVRYILQHPD-IFTTKSLVERAEPV-MRGPVLAQMH-GKEHSAKRR 126 (441)
T ss_dssp HCGGGTHHHH-HHHCSEEEETTTT--EEEECCHHHHHHHHHCTT-TEECCCTTSCCCCS-CC--------------CCHH
T ss_pred cChHHHHHHH-HhcCCEEEeCCCC--EEEEcCHHHHHHHhcCcc-cccccccccccccc-cCCCccccCC-cHHHHHHHH
Confidence 4667777665 6899999886554 899999999999997654 47665432222211 1233578787 999999999
Q ss_pred HHHHHhhccccccccccHHHH---HHHHHhcC------hhHHHHHh------hhcc--------cccccc-------ccc
Q 040924 109 ICAIHLFNSNRGQNFRPIEKM---NLIHQQAS------RPLFVELV------LARG--------YFPFIG-------WID 158 (208)
Q Consensus 109 ~l~~~~f~~~~l~~~~~~~~~---~~l~~~~~------~~~~~~~~------~~~~--------~~p~l~-------~l~ 158 (208)
+++ ++|+.+.++.+.+.+.+ +.++.+.+ ..++...+ .++. +..+.. .+.
T Consensus 127 ~~~-~~fs~~~l~~~~~~i~~~~~~ll~~l~~~~~~dl~~~~~~~~~~~vi~~l~G~~~~~~~~~~~~~~~~~~~~~~~~ 205 (441)
T 3nc3_A 127 IVV-RSFIGDALDHLSPLIKQNAENLLAPYLERGKSDLVNDFGKTFAVCVTMDMLGLDKRDHEKISEWHSGVADFITSIS 205 (441)
T ss_dssp HHH-HHHHHTHHHHHHHHHHHHHHHHHTTTTTTTEEECCCCCHHHHHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHHCSC
T ss_pred HHH-hhcCHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhccccc
Confidence 999 99999999999998887 44444321 01111100 0000 000000 010
Q ss_pred cccchhhhhhhhHHHHHHHHHHHHHHhhcccccchhccccccHHHhhhc
Q 040924 159 KLTGMLQRPQNNFQEIDRVYQELIDKHLDPNRAKIEQLQQEDVIDVLLQ 207 (208)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~l~~ll~ 207 (208)
......+...++...+.+++.++|+++++.. . .|+++.|++
T Consensus 206 ~~~~~~~~~~~~~~~l~~~~~~~i~~rr~~~------~--~Dll~~Ll~ 246 (441)
T 3nc3_A 206 QSPEARAHSLWCSEQLSQYLMPVIKERRVNP------G--SDLISILCT 246 (441)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHTTSC------C--SSHHHHHCC
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHhCC------C--CCHHHHHHH
Confidence 0012245566778889999999999887642 2 578877764
No 55
>1q5d_A P450 epoxidase; cytochrome P450, epothilone, oxydoreductase, heme-enzyme, oxidoreductase; HET: HEM EPB; 1.93A {Sorangium cellulosum} SCOP: a.104.1.1 PDB: 1q5e_A* 1pkf_A*
Probab=99.44 E-value=4.8e-13 Score=105.60 Aligned_cols=163 Identities=17% Similarity=0.149 Sum_probs=106.8
Q ss_pred CCCchHHHHHHHHhhCCeEEEEcCCcCEEEecCHHHHHHHHHHcCccCCCCCC-----hHHH---HHhhcC-CcceeeCC
Q 040924 28 VSKPHVLFWELSKKYGPLMSLRLGFSPSLVVSSAKMAKEILKTHDLQFCSRPA-----LVAQ---QKLSYN-GLDLAFSP 98 (208)
Q Consensus 28 ~~~~~~~~~~~~~~yG~v~~~~~~~~~~v~i~dp~~~~~i~~~~~~~~~~~~~-----~~~~---~~~~~~-~~~l~~~~ 98 (208)
..+++..+.++ ++||||++ + ++.+.|+++||+.+++||.++. |.+++. .... ..+... +.++++++
T Consensus 25 ~~~p~~~~~~l-~~~Gpv~~-~-~~~~~vvv~~~~~v~~vl~~~~--f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 99 (419)
T 1q5d_A 25 AEDPFPAIERL-REATPIFY-W-DEGRSWVLTRYHDVSAVFRDER--FAVSREEWESSAEYSSAIPELSDMKKYGLFGLP 99 (419)
T ss_dssp TTCCHHHHHHH-HHHCSEEE-E-TTTTEEEECSHHHHHHHHTCTT--EECCGGGSTTHHHHHHSSGGGHHHHHHSTTTSC
T ss_pred hhChHHHHHHH-HhhCCccc-c-CCCCEEEEecHHHHHHHHcCCC--ccccccccccccccccccchhhhhcccccccCC
Confidence 46788899888 78999998 5 6778999999999999997653 776651 1101 111111 46788887
Q ss_pred CChHHHHHHHHHHHHhhccccccccccHHHH---HHHHHhc--C---------------------------hhHHHHHh-
Q 040924 99 YDEYWREIRKICAIHLFNSNRGQNFRPIEKM---NLIHQQA--S---------------------------RPLFVELV- 145 (208)
Q Consensus 99 ~g~~w~~~Rk~l~~~~f~~~~l~~~~~~~~~---~~l~~~~--~---------------------------~~~~~~~~- 145 (208)
|+.|+++|++++ ++|+.+.++.+.+.+.+ +.++.+. + .+.+.+..
T Consensus 100 -g~~h~~~R~~~~-~~fs~~~l~~~~~~i~~~~~~ll~~l~~~~~~d~~~~~~~~~~~~vi~~~fG~~~~~~~~~~~~~~ 177 (419)
T 1q5d_A 100 -PEDHARVRKLVN-PSFTSRAIDLLRAEIQRTVDQLLDARSGQEEFDVVRDYAEGIPMRAISALLKVPAECDEKFRRFGS 177 (419)
T ss_dssp -HHHHHHHHHHHG-GGGSHHHHGGGHHHHHHHHHHHHHHHTTSSCEETTTTTGGGSHHHHHHHHTTCCGGGHHHHHHHHH
T ss_pred -chHHHHHHHHHH-HhcCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 999999999999 99999999999998887 3344332 1 01111111
Q ss_pred hhcc-ccccccccccccchhhhhhhhHHHHHHHHHHHHHHhhcccccchhccccc-cHHHhhhc
Q 040924 146 LARG-YFPFIGWIDKLTGMLQRPQNNFQEIDRVYQELIDKHLDPNRAKIEQLQQE-DVIDVLLQ 207 (208)
Q Consensus 146 ~~~~-~~p~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-d~l~~ll~ 207 (208)
.... ..|. .++......++..++...+.+++.++|+++++.. . . |+++.|++
T Consensus 178 ~~~~~~~~~--~~P~~~~~~~~~~~~~~~~~~~~~~~i~~r~~~~------~--~~dll~~ll~ 231 (419)
T 1q5d_A 178 ATARALGVG--LVPRVDEETKTLVASVTEGLALLHGVLDERRRNP------L--ENDVLTMLLQ 231 (419)
T ss_dssp HHHHHTTTT--TSSCCCSCHHHHHHHHHHHHHHHHHHHHHHHHSC------C--SSCHHHHHHH
T ss_pred HHHHhcccc--cccCChHHHHHHHHHHHHHHHHHHHHHHHHHhCC------C--CCCHHHHHHh
Confidence 0000 0011 1111112235667788889999999998887531 1 4 78887764
No 56
>2z3t_A Cytochrome P450; monoxygenase, oxydoreductase, heme-enzyme, oxidoreductase; HET: HEM; 1.90A {Streptomyces SP} PDB: 2z3u_A* 3a1l_A*
Probab=99.43 E-value=1.1e-12 Score=103.87 Aligned_cols=96 Identities=13% Similarity=0.110 Sum_probs=75.1
Q ss_pred CCchHHHHHHHHhhCCeEEEEcC--CcCEEEecCHHHHHHHHHHcCccCCCCCCh--------H-HHH-----HhhcCCc
Q 040924 29 SKPHVLFWELSKKYGPLMSLRLG--FSPSLVVSSAKMAKEILKTHDLQFCSRPAL--------V-AQQ-----KLSYNGL 92 (208)
Q Consensus 29 ~~~~~~~~~~~~~yG~v~~~~~~--~~~~v~i~dp~~~~~i~~~~~~~~~~~~~~--------~-~~~-----~~~~~~~ 92 (208)
.+++..+.++. +||||+++++| +.+.++++||+.+++||.+. .|.+++.. . ... .....+.
T Consensus 20 ~~p~~~~~~l~-~~Gpv~~~~~g~~~~~~~vv~~~~~v~~vl~~~--~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (425)
T 2z3t_A 20 ADPYPVYRRYR-EAAPVHRTASGPGKPDTYYVFTYDDVVRVLSNR--RLGRNARVASGDTDTAPVPIPTEHRALRTVVEN 96 (425)
T ss_dssp HCCHHHHHHHH-HHCSEEEECCCSSCCCEEEECSHHHHHHHHHCT--TEESSCCCC---------------CHHHHHHTT
T ss_pred cChHHHHHHHH-hcCCeEeccccCCCCCeEEEcCHHHHHHHHcCC--Ccccccccccccccccccccccccccccccccc
Confidence 56788888886 49999999987 77899999999999999754 67666431 1 100 0011247
Q ss_pred ceeeCCCChHHHHHHHHHHHHhhccccccccccHHHH
Q 040924 93 DLAFSPYDEYWREIRKICAIHLFNSNRGQNFRPIEKM 129 (208)
Q Consensus 93 ~l~~~~~g~~w~~~Rk~l~~~~f~~~~l~~~~~~~~~ 129 (208)
|+++++ |+.|+++|++++ ++|+.+.++.+.+.+.+
T Consensus 97 ~l~~~d-g~~h~~~R~~~~-~~fs~~~l~~~~~~i~~ 131 (425)
T 2z3t_A 97 WLVFLD-PPHHTELRSLLT-TEFSPSIVTGLRPRIAE 131 (425)
T ss_dssp CGGGCC-HHHHHHHHHHHH-GGGSHHHHHHHHHHHHH
T ss_pred ccccCC-chHHHHHHHHHH-HhhCHHHHHHHHHHHHH
Confidence 888887 999999999999 99999999999998887
No 57
>2wm5_A CYP124, putative cytochrome P450 124; metal-binding, oxidoreductase, omega-hydroxylation, iron, heme, fatty acid, monooxygenase; HET: HEM; 1.50A {Mycobacterium tuberculosis} PDB: 2wm4_A*
Probab=99.43 E-value=6.4e-13 Score=105.41 Aligned_cols=97 Identities=11% Similarity=0.016 Sum_probs=75.9
Q ss_pred CCchHHHHHHHHhhCCeEEEEcC-------CcCEEEecCHHHHHHHHHHcCccCCCCCCh--H-HHHHhhcCCcceeeCC
Q 040924 29 SKPHVLFWELSKKYGPLMSLRLG-------FSPSLVVSSAKMAKEILKTHDLQFCSRPAL--V-AQQKLSYNGLDLAFSP 98 (208)
Q Consensus 29 ~~~~~~~~~~~~~yG~v~~~~~~-------~~~~v~i~dp~~~~~i~~~~~~~~~~~~~~--~-~~~~~~~~~~~l~~~~ 98 (208)
.+++..+.++. +||||+++.++ +.+.|+++||+.+++||.+. +.|.+++.. . ....+...+.++++++
T Consensus 44 ~~p~~~~~~l~-~~Gpv~~~~~~~~~~~~~g~~~vvv~~~~~v~~vl~~~-~~f~~~~~~~~~~~~~~~~~~~~~l~~~d 121 (435)
T 2wm5_A 44 DVRDGAFATLR-REAPISFWPTIELPGFVAGNGHWALTKYDDVFYASRHP-DIFSSYPNITINDQTPELAEYFGSMIVLD 121 (435)
T ss_dssp HHHHHHHHHHH-HHCSEEEECCCCC---CCCCCEEEECSHHHHHHHHHCT-TTEECSSCCSSSCCCHHHHHHHHGGGGCC
T ss_pred CChhHHHHHHH-hcCCeEecccccccccCCCCCeEEEcCHHHHHHHHcCc-ccccCccccccCccccchhhhccccccCC
Confidence 45778888885 69999999875 66899999999999999864 467766521 1 1111211256788887
Q ss_pred CChHHHHHHHHHHHHhhccccccccccHHHH
Q 040924 99 YDEYWREIRKICAIHLFNSNRGQNFRPIEKM 129 (208)
Q Consensus 99 ~g~~w~~~Rk~l~~~~f~~~~l~~~~~~~~~ 129 (208)
|+.|+++|++++ ++|+.+.++.+.+.+.+
T Consensus 122 -g~~h~~~R~~l~-~~fs~~~l~~~~~~i~~ 150 (435)
T 2wm5_A 122 -DPRHQRLRSIVS-RAFTPKVVARIEAAVRD 150 (435)
T ss_dssp -TTHHHHHHHHHH-HTCCHHHHHHHHHHHHH
T ss_pred -cHHHHHHHHHhH-HhhCHHHHHHHHHHHHH
Confidence 999999999999 99999999999988887
No 58
>1odo_A Putative cytochrome P450 154A1; P450 monooxygenase, oxidoreductase; HET: HEM PIM; 1.85A {Streptomyces coelicolor} SCOP: a.104.1.1
Probab=99.42 E-value=2.4e-13 Score=106.99 Aligned_cols=97 Identities=18% Similarity=0.194 Sum_probs=75.5
Q ss_pred CCCchHHHHHHHHhhCCeEEEEcCCcCEEEecCHHHHHHHHHHcCccCCCCCC--hHHHHHhh--------cCCcceeeC
Q 040924 28 VSKPHVLFWELSKKYGPLMSLRLGFSPSLVVSSAKMAKEILKTHDLQFCSRPA--LVAQQKLS--------YNGLDLAFS 97 (208)
Q Consensus 28 ~~~~~~~~~~~~~~yG~v~~~~~~~~~~v~i~dp~~~~~i~~~~~~~~~~~~~--~~~~~~~~--------~~~~~l~~~ 97 (208)
.++++..+.++ ++||||+++++++.+.|+++||+.+++|+.++. +.+++. +.....+. ..+.+++++
T Consensus 14 ~~~p~~~~~~l-~~yGpv~~~~~~~~~~vvv~~~~~v~~vl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 90 (408)
T 1odo_A 14 GADHHTEHRTL-REGGPATWVDVLGVQAWSVSDPVLLKQLLTSSD--VSKDARAHWPAFGEVVGTWPLALWVAVENMFTA 90 (408)
T ss_dssp CTTHHHHHHHH-HTTCSEEEEEETTEEEEEECCHHHHHHHTTCTT--EESCHHHHCTTHHHHTTTCTTTHHHHCCSGGGC
T ss_pred cCChHHHHHHH-HHhCCeEEeccCCCCEEEECCHHHHHHHHcCCC--ccccccccccccccccccccccccccccccccc
Confidence 57889999999 999999999988889999999999999997542 333321 01000110 024578877
Q ss_pred CCChHHHHHHHHHHHHhhccccccccccHHHH
Q 040924 98 PYDEYWREIRKICAIHLFNSNRGQNFRPIEKM 129 (208)
Q Consensus 98 ~~g~~w~~~Rk~l~~~~f~~~~l~~~~~~~~~ 129 (208)
+ |+.|+++|++++ ++|+...++.+.+.+.+
T Consensus 91 ~-g~~h~~~R~~~~-~~fs~~~l~~~~~~i~~ 120 (408)
T 1odo_A 91 Y-GPNHRKLRRLVA-PAFSARRVDAMRPAVEA 120 (408)
T ss_dssp C-HHHHHHHHHTTG-GGGSHHHHHHHHHHHHH
T ss_pred C-ChHHHHHHHHhh-hhcCHHHHHHHHHHHHH
Confidence 7 999999999999 99999999999998888
No 59
>2dkk_A Cytochrome P450; CYP158A1, INHI oxidoreductase; HET: HEM; 1.97A {Streptomyces coelicolor} PDB: 2nz5_A* 2nza_A*
Probab=99.41 E-value=6.1e-13 Score=104.77 Aligned_cols=167 Identities=17% Similarity=0.139 Sum_probs=105.1
Q ss_pred CCCchHHHHHHHHhhCCeEEEEcCC--cCEEEecCHHHHHHHHHHcCccCCCCCChHH----HHHhhcC-CcceeeCCCC
Q 040924 28 VSKPHVLFWELSKKYGPLMSLRLGF--SPSLVVSSAKMAKEILKTHDLQFCSRPALVA----QQKLSYN-GLDLAFSPYD 100 (208)
Q Consensus 28 ~~~~~~~~~~~~~~yG~v~~~~~~~--~~~v~i~dp~~~~~i~~~~~~~~~~~~~~~~----~~~~~~~-~~~l~~~~~g 100 (208)
.++++..+.+++ +||||+++.+++ .+.+++++|+.+++||.+ ..|.+++.... ....... +.++++++ |
T Consensus 26 g~~p~~~~~~l~-~~Gpv~~~~~~~g~~~~~vv~~~~~v~~vl~~--~~f~~~~~~~~~~~~~~~~~~~~~~~l~~~d-g 101 (411)
T 2dkk_A 26 GPEFDPVLAELM-REGPLTRVRLPHGEGWAWLATRYDDVKAITND--PRFGRAEVTQRQITRLAPHFKPRPGSLAFAD-Q 101 (411)
T ss_dssp SSCCCHHHHHHH-TTCSEEEEECSBSBSCEEEECSHHHHHHHTTC--TTEESGGGGGSCBCBSSSCCCCCTTCSTTCC-T
T ss_pred cccccHHHHHHH-hcCCeEeeecCCCceeEEEEcCHHHHHHHHcC--CCcccCCCCCCCccccccchhccccccccCC-c
Confidence 355668888887 799999998754 679999999999999965 35654432110 1111111 56788887 9
Q ss_pred hHHHHHHHHHHHHhhccccccccccHHHH---HHHHHhc--C-----hhHHHH-H----h-hhcc--------ccccccc
Q 040924 101 EYWREIRKICAIHLFNSNRGQNFRPIEKM---NLIHQQA--S-----RPLFVE-L----V-LARG--------YFPFIGW 156 (208)
Q Consensus 101 ~~w~~~Rk~l~~~~f~~~~l~~~~~~~~~---~~l~~~~--~-----~~~~~~-~----~-~~~~--------~~p~l~~ 156 (208)
+.|+++|++++ ++|+.+.++.+.+.+.+ +.++.+. + ..++.. + + .++. +..+...
T Consensus 102 ~~h~~~R~~~~-~~fs~~~l~~~~~~i~~~~~~l~~~l~~~g~~~dl~~~~~~~~~~~vi~~l~G~~~~~~~~~~~~~~~ 180 (411)
T 2dkk_A 102 PDHNRLRRAVA-GAFTVGATKRLRPRAQEILDGLVDGILAEGPPADLVERVLEPFPIAVVSEVMGVPAADRERVHSWTRQ 180 (411)
T ss_dssp THHHHHHHHHG-GGSSHHHHHHHHHHHHHHHHHHHHHHHHHCSCEEHHHHTTTHHHHHHHHHHHTCCSSHHHHHHHHHGG
T ss_pred hHHHHHHHHhh-HhhCHHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 99999999999 99999999999998887 3333321 2 111111 1 0 0000 0011111
Q ss_pred cccccchhhhhhhhHHHHHHHHHHHHHHhhcccccchhccccccHHHhhhc
Q 040924 157 IDKLTGMLQRPQNNFQEIDRVYQELIDKHLDPNRAKIEQLQQEDVIDVLLQ 207 (208)
Q Consensus 157 l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~l~~ll~ 207 (208)
+.......++..++...+.+++.++|+++++.. . .|+++.|++
T Consensus 181 ~~~~~~~~~~~~~~~~~l~~~~~~~i~~r~~~~------~--~dll~~ll~ 223 (411)
T 2dkk_A 181 IISTSGGAEAAERAKRGLYGWITETVRARAGSE------G--GDVYSMLGA 223 (411)
T ss_dssp GCSSCSCSHHHHHHHHHHHHHHHHHHHTTTTCC------S--SCHHHHHHH
T ss_pred HHhccchHHHHHHHHHHHHHHHHHHHHHHHhCC------C--CCHHHHHHH
Confidence 100011234566777888899999998876541 1 577777763
No 60
>2xkr_A CYP142, putative cytochrome P450 142; oxidoreductase; HET: HEM; 1.60A {Mycobacterium tuberculosis}
Probab=99.41 E-value=1.4e-12 Score=102.29 Aligned_cols=162 Identities=12% Similarity=0.099 Sum_probs=104.8
Q ss_pred CCCchHHHHHHHHhhCCeEEEEcCCcCEEEecCHHHHHHHHHHcCccCCCCCChHHHHHhhcCCcceeeCCCChHHHHHH
Q 040924 28 VSKPHVLFWELSKKYGPLMSLRLGFSPSLVVSSAKMAKEILKTHDLQFCSRPALVAQQKLSYNGLDLAFSPYDEYWREIR 107 (208)
Q Consensus 28 ~~~~~~~~~~~~~~yG~v~~~~~~~~~~v~i~dp~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~w~~~R 107 (208)
..+++..+.++++ ||||+++. .+.++++||+.+++|+.+. +.|.+++... ... ..+.++++++ |+.|+++|
T Consensus 17 ~~~p~~~~~~l~~-~Gpv~~~~---~~~vvv~~~~~v~~vl~~~-~~f~~~~~~~-~~~--~~~~~l~~~~-g~~h~~~R 87 (398)
T 2xkr_A 17 SREARAAYRWMRA-NQPVFRDR---NGLAAASTYQAVIDAERQP-ELFSNAGGIR-PDQ--PALPMMIDMD-DPAHLLRR 87 (398)
T ss_dssp CTTHHHHHHHHHH-HCSEEECT---TCCEEECSHHHHHHHHTCT-TTEESTTCSS-TTS--CCCSSGGGCC-TTHHHHHH
T ss_pred ccChhHHHHHHHh-cCCeeecC---CCeEEEecHHHHHHHHhCc-ccccCccccC-Ccc--cccccccccC-chHHHHHH
Confidence 3678889989887 99998663 4899999999999999754 3676665322 111 1357888887 99999999
Q ss_pred HHHHHHhhccccccccccHHHH---HHHHHhc--Chh----HHHH-H----h-hhcc--------cccccc----cc-c-
Q 040924 108 KICAIHLFNSNRGQNFRPIEKM---NLIHQQA--SRP----LFVE-L----V-LARG--------YFPFIG----WI-D- 158 (208)
Q Consensus 108 k~l~~~~f~~~~l~~~~~~~~~---~~l~~~~--~~~----~~~~-~----~-~~~~--------~~p~l~----~l-~- 158 (208)
++++ ++|+.+.++.+.+.+.+ +.++.+. +.- ++.. + + ..+. +..+.. .+ +
T Consensus 88 ~~~~-~~fs~~~l~~~~~~i~~~~~~l~~~l~~~~~~d~~~~~~~~~~~~vi~~~fG~~~~~~~~~~~~~~~~~~~~~~~ 166 (398)
T 2xkr_A 88 KLVN-AGFTRKRVKDKEASIAALCDTLIDAVCERGECDFVRDLAAPLPMAVIGDMLGVRPEQRDMFLRWSDDLVTFLSSH 166 (398)
T ss_dssp HHHG-GGSCHHHHHTTHHHHHHHHHHHHHTTTTTSEEEHHHHTTTHHHHHHHHHHHTCCGGGHHHHHHHHHHHHHHHTSC
T ss_pred HHhh-hhhCHHHHHHHHHHHHHHHHHHHHhhhhcCCccHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhccCcc
Confidence 9999 99999999999998887 3344332 100 1100 0 0 0000 000000 00 0
Q ss_pred cccchhhhhhhhHHHHHHHHHHHHHHhhcccccchhccccccHHHhhhc
Q 040924 159 KLTGMLQRPQNNFQEIDRVYQELIDKHLDPNRAKIEQLQQEDVIDVLLQ 207 (208)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~l~~ll~ 207 (208)
.++...++..++...+.+++.++|+++++. . . .|+++.|++
T Consensus 167 ~~p~~~~~~~~~~~~~~~~~~~~i~~r~~~-----~-~--~dll~~ll~ 207 (398)
T 2xkr_A 167 VSQEDFQITMDAFAAYNDFTRATIAARRAD-----P-T--DDLVSVLVS 207 (398)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHS-----C-C--SSHHHHHHH
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHhC-----C-C--CCHHHHHHH
Confidence 012234566677788899999999887753 1 2 577777764
No 61
>3buj_A CALO2; heme, iron, metal-binding, monooxygenase, oxidoreducta binding protein; HET: HEM; 2.47A {Micromonospora echinospora}
Probab=99.40 E-value=1.7e-12 Score=101.72 Aligned_cols=159 Identities=12% Similarity=0.101 Sum_probs=102.3
Q ss_pred CCchHHHHHHHHhhCCeEEEEcCCcCEEEecCHHHHHHHHHHcCccCCCCCChHHHH------HhhcC-CcceeeCCCCh
Q 040924 29 SKPHVLFWELSKKYGPLMSLRLGFSPSLVVSSAKMAKEILKTHDLQFCSRPALVAQQ------KLSYN-GLDLAFSPYDE 101 (208)
Q Consensus 29 ~~~~~~~~~~~~~yG~v~~~~~~~~~~v~i~dp~~~~~i~~~~~~~~~~~~~~~~~~------~~~~~-~~~l~~~~~g~ 101 (208)
.+++..+.++ ++||||++ + +.+.++|+||+.+++||.+ ..|.+++...... ..... +.++++++ |+
T Consensus 13 ~~p~~~~~~l-~~yGpv~~-~--g~~~~vv~~~~~v~~vl~~--~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-g~ 85 (397)
T 3buj_A 13 RDPYPSYHWL-LRHDPVHR-G--AHRVWYVSRFADVRAVLGD--ERFARTGIRRFWTDLVGPGLLAEIVGDIILFQD-EP 85 (397)
T ss_dssp HCCHHHHHHH-HHHCSEEE-C--GGGCEEECSHHHHHHHHTC--TTEESHHHHHHHHHHHCSSHHHHHHTTCGGGCC-TT
T ss_pred cCchHHHHHH-HhcCCeee-C--CCCeEEEcCHHHHHHHHcC--CCcccCcccccccccccccccccccccccccCC-ch
Confidence 4677777666 68999998 5 5789999999999999964 3565443211111 11111 57788887 99
Q ss_pred HHHHHHHHHHHHhhccccccccccHHHH---HHHHHhc--C----hhHHHHHh------------------------hhc
Q 040924 102 YWREIRKICAIHLFNSNRGQNFRPIEKM---NLIHQQA--S----RPLFVELV------------------------LAR 148 (208)
Q Consensus 102 ~w~~~Rk~l~~~~f~~~~l~~~~~~~~~---~~l~~~~--~----~~~~~~~~------------------------~~~ 148 (208)
.|+++|++++ ++|+.+.++.+.+.+.+ +.++.+. + ..++...+ ...
T Consensus 86 ~h~~~R~~~~-~~fs~~~l~~~~~~i~~~~~~l~~~l~~~~~~dl~~~~~~~~~~~vi~~~~G~~~~~~~~~~~~~~~~~ 164 (397)
T 3buj_A 86 DHGRLRGVVG-PAFSPSALRRLEPVIAGTVDDLLRPALARGAMDVVDELAYPLALRAVLGLLGLPAADWGAVGRWSRDVG 164 (397)
T ss_dssp HHHHHHHHHG-GGSSTTTTGGGHHHHHHHHHHHHHHHHTTTEEEHHHHTHHHHHHHHHHHHHTCCGGGHHHHHHHHHHHH
T ss_pred hHHHHHHHHH-HhcCHHHHHHHHHHHHHHHHHHHHHHhhcCCeehHHHHHHHhHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 9999999999 99999999999998888 3333332 1 11111101 000
Q ss_pred cccccccccccccchhhhhhhhHHHHHHHHHHHHHHhhcccccchhccccccHHHhhhc
Q 040924 149 GYFPFIGWIDKLTGMLQRPQNNFQEIDRVYQELIDKHLDPNRAKIEQLQQEDVIDVLLQ 207 (208)
Q Consensus 149 ~~~p~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~l~~ll~ 207 (208)
..+++ .++ +...++..++...+.+++.++|+++++.. . .|+++.|++
T Consensus 165 ~~~~~--~~~--~~~~~~~~~~~~~~~~~~~~~i~~r~~~~------~--~dll~~ll~ 211 (397)
T 3buj_A 165 RTLDR--GAS--AEDMRRGHAAIAEFADYVERALARRRREG------G--EDLLALMLD 211 (397)
T ss_dssp GGGCS--SCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHC------C--CSHHHHHHH
T ss_pred hhcCC--CCC--hHHHHHHHHHHHHHHHHHHHHHHHHHcCC------C--CCHHHHHHH
Confidence 00110 011 12345666777888999999998877541 2 578887764
No 62
>1gwi_A CYP154C1, cytochrome P450 154C1; oxidoreductase, macrolide antibiotics, 12- and 14- carbon macrolactone monooxygenase, heme; HET: HEM; 1.92A {Streptomyces coelicolor} SCOP: a.104.1.1
Probab=99.40 E-value=1.4e-12 Score=102.79 Aligned_cols=167 Identities=17% Similarity=0.187 Sum_probs=106.2
Q ss_pred CCCchHHHHHHHHhhCCeEEEEc-CCcCEEEecCHHHHHHHHHHcCccCCCCC-ChHHHH--Hhh--------cC-Ccce
Q 040924 28 VSKPHVLFWELSKKYGPLMSLRL-GFSPSLVVSSAKMAKEILKTHDLQFCSRP-ALVAQQ--KLS--------YN-GLDL 94 (208)
Q Consensus 28 ~~~~~~~~~~~~~~yG~v~~~~~-~~~~~v~i~dp~~~~~i~~~~~~~~~~~~-~~~~~~--~~~--------~~-~~~l 94 (208)
..+++..+.++ ++||||+++++ ++.+.|+++||+.+++||.+.. +.+++ .+.... ... .. +.++
T Consensus 16 ~~~p~~~~~~l-~~yGpv~~~~~~g~~~~vvv~~~~~v~~vl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 92 (411)
T 1gwi_A 16 VTDLDGESARL-RAAGPLAAVELPGGVPVWAVTHHAEAKALLTDPR--LVKDINVWGAWRRGEIPADWPLIGLANPGRSM 92 (411)
T ss_dssp CSCHHHHHHHH-HHTCSEEEEEETTTEEEEEECSHHHHHHHHTCTT--EECCGGGCHHHHTTCSCTTCTTHHHHSCCSSG
T ss_pred cCChHHHHHHH-HHhCCeeeeecCCCccEEEEeCHHHHHHHHcCCc--cccCcccccccccccCCcccchhhhhcccccc
Confidence 56789999999 99999999997 7889999999999999997543 33332 111110 000 02 4678
Q ss_pred eeCCCChHHHHHHHHHHHHhhccccccccccHHHH---HHHHHhc--C-----hhHHHH-H----h-hhcc--------c
Q 040924 95 AFSPYDEYWREIRKICAIHLFNSNRGQNFRPIEKM---NLIHQQA--S-----RPLFVE-L----V-LARG--------Y 150 (208)
Q Consensus 95 ~~~~~g~~w~~~Rk~l~~~~f~~~~l~~~~~~~~~---~~l~~~~--~-----~~~~~~-~----~-~~~~--------~ 150 (208)
++++ |+.|+++|++++ ++|+.+.++.+.+.+.+ +.++.+. + ...+.. + + .++. +
T Consensus 93 ~~~~-g~~h~~~R~~~~-~~fs~~~l~~~~~~i~~~~~~l~~~l~~~~~~~d~~~~~~~~~~~~vi~~~~G~~~~~~~~~ 170 (411)
T 1gwi_A 93 LTVD-GAEHRRLRTLVA-QALTVRRVEHMRGRITELTDRLLDELPADGGVVDLKAAFAYPLPMYVVADLMGIEEARLPRL 170 (411)
T ss_dssp GGCC-HHHHHHHHHHHT-TTSCHHHHHTTHHHHHHHHHHHHHTSCCSCCCEEHHHHTTTHHHHHHHHHHHTCCGGGHHHH
T ss_pred ccCC-cHHHHHHHHHHH-HhcCHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchHHHHhhHHHHHHHHHHhCCCHHHHHHH
Confidence 8777 999999999999 99999999999998888 4444443 1 111111 1 1 0000 0
Q ss_pred cccccccccccchhhhhhhhHHHHHHHHHHHHHHhhcccccchhccccccHHHhhhc
Q 040924 151 FPFIGWIDKLTGMLQRPQNNFQEIDRVYQELIDKHLDPNRAKIEQLQQEDVIDVLLQ 207 (208)
Q Consensus 151 ~p~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~l~~ll~ 207 (208)
..+...+.......++..++...+.+++.++|+++++.. . .|+++.|++
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~r~~~~------~--~d~l~~ll~ 219 (411)
T 1gwi_A 171 KVLFEKFFSTQTPPEEVVATLTELASIMTDTVAAKRAAP------G--DDLTSALIQ 219 (411)
T ss_dssp HHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHHHHHHHSC------C--SSHHHHHHH
T ss_pred HHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHHHhCC------C--CCHHHHHHH
Confidence 000000100001124556677788889999998877531 1 577777764
No 63
>2uuq_A CYP130, cytochrome P450 130; iron, heme, monooxygenase, metal-binding, oxidoreductase, hypothetical protein; HET: HEM; 1.46A {Mycobacterium tuberculosis} PDB: 2uvn_A* 2whf_A* 2wh8_A* 2wgy_A*
Probab=99.36 E-value=4.2e-12 Score=100.06 Aligned_cols=95 Identities=15% Similarity=0.200 Sum_probs=75.1
Q ss_pred CCchHHHHHHHHhhCCeE-----EEEcCCcCEEEecCHHHHHHHHHHcCccCCCCCChH-HHH--Hh-h-cCCcceeeCC
Q 040924 29 SKPHVLFWELSKKYGPLM-----SLRLGFSPSLVVSSAKMAKEILKTHDLQFCSRPALV-AQQ--KL-S-YNGLDLAFSP 98 (208)
Q Consensus 29 ~~~~~~~~~~~~~yG~v~-----~~~~~~~~~v~i~dp~~~~~i~~~~~~~~~~~~~~~-~~~--~~-~-~~~~~l~~~~ 98 (208)
.+++..+.++. +||||+ ++++ .+.++++||+.+++|+.+. ..|.+++... ... .+ . ..+.++++++
T Consensus 25 ~~p~~~~~~l~-~~Gpv~~~~~~~~~~--~~~vvv~~~~~v~~vl~~~-~~f~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 100 (414)
T 2uuq_A 25 PNPWPMYRALR-DHDPVHHVVPPQRPE--YDYYVLSRHADVWSAARDH-QTFSSAQGLTVNYGELEMIGLHDTPPMVMQD 100 (414)
T ss_dssp TCCHHHHHHHH-HHCSEEEECCTTCGG--GCEEEECSHHHHHHHHHCT-TTEESTTCSSSCTTHHHHHTCSSSCCGGGCC
T ss_pred cCchHHHHHHH-hcCCEEcccccccCC--CCEEEEcCHHHHHHHHcCc-hhccCCCCcccccCcccccccccccccccCC
Confidence 57888888884 699999 7765 6899999999999999865 5676665321 111 22 2 2367888887
Q ss_pred CChHHHHHHHHHHHHhhccccccccccHHHH
Q 040924 99 YDEYWREIRKICAIHLFNSNRGQNFRPIEKM 129 (208)
Q Consensus 99 ~g~~w~~~Rk~l~~~~f~~~~l~~~~~~~~~ 129 (208)
|+.|+++|++++ ++|+.+.++.+.+.+.+
T Consensus 101 -g~~h~~~R~~~~-~~fs~~~l~~~~~~i~~ 129 (414)
T 2uuq_A 101 -PPVHTEFRKLVS-RGFTPRQVETVEPTVRK 129 (414)
T ss_dssp -TTHHHHHHHHHH-TTSSHHHHHHHHHHHHH
T ss_pred -chhHHHHHHHhh-hhcCHHHHHHHHHHHHH
Confidence 999999999999 99999999999998887
No 64
>3dan_A Cytochrome P450 74A2; AOS heme cytochrome P450 structure, fatty acid biosynthesis, heme, iron, lipid synthesis, lyase, metal-binding; HET: HEM; 1.80A {Parthenium argentatum} PDB: 3dam_A* 3dbm_A*
Probab=99.34 E-value=5.6e-13 Score=106.51 Aligned_cols=122 Identities=13% Similarity=0.199 Sum_probs=84.5
Q ss_pred CCCCCCCCCCCCCCccccccccCC----CC-CchHHHHHHHHhhCC-eEEEEcC-------CcCEEEecCHHHHHHHHHH
Q 040924 4 SRNNTKLPPGPWGLPFIGTLHQLD----VS-KPHVLFWELSKKYGP-LMSLRLG-------FSPSLVVSSAKMAKEILKT 70 (208)
Q Consensus 4 ~~~~~~~~pgp~~~p~~g~~~~~~----~~-~~~~~~~~~~~~yG~-v~~~~~~-------~~~~v~i~dp~~~~~i~~~ 70 (208)
+..+.+.+|||.++|++|++..+. .. +++.++.++.++||+ ||+++++ .+..|+++|....+.++..
T Consensus 4 ~~~Pl~~iPGp~g~P~iG~~~~~~~~~~~~g~~~~~~~~~~~kyG~~vf~~~~~~~~~v~~~~~~v~~~~~~~~~~~~~~ 83 (473)
T 3dan_A 4 SSKPLREIPGSYGIPFFQPIKDRLEYFYGTGGRDEYFRSRMQKYQSTVFRANMPPGPFVSSNPKVIVLLDAKSFPILFDV 83 (473)
T ss_dssp GGSCBCCCCCCCCSTTHHHHHHHHHHHHSTTHHHHHHHHHHHHHTCSEEEEECTTCTTTCSCCEEEEECSTTTGGGGGCT
T ss_pred CCCCCCCCCCCCCCcchhhHHHHHHHHHhhcCchHHHHhHHHHhCCeEEEecCCCCCccccCCceEEeecccccceecCC
Confidence 456788899999999999998753 34 788999999999999 9999886 3455666666655555531
Q ss_pred ----cCccCCCCCChHHHHHhh-cCCcceeeCCCChHHHHHHHHHHHHhhccccccccccHHHH
Q 040924 71 ----HDLQFCSRPALVAQQKLS-YNGLDLAFSPYDEYWREIRKICAIHLFNSNRGQNFRPIEKM 129 (208)
Q Consensus 71 ----~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~g~~w~~~Rk~l~~~~f~~~~l~~~~~~~~~ 129 (208)
+.+.+..... .....+. ....+++..+ |+.|+++|++++ ++|+.+ ++.+.+.+.+
T Consensus 84 ~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~-~~~h~~~R~~~~-~~f~~~-~~~~~~~i~~ 143 (473)
T 3dan_A 84 SKVEKKDLFTGTYM-PSTKLTGGYRVLSYLDPS-EPRHAQLKNLLF-FMLKNS-SNRVIPQFET 143 (473)
T ss_dssp TTEECSSCTTSSSC-CCGGGGTTSCCGGGCCTT-SHHHHHHHHHHH-HHHHHH-HHHHHHHHHH
T ss_pred cceecccccccccc-CCccccCCCcceeeeCCC-cHHHHHHHHHHH-HHHHHH-HHHHHHHHHH
Confidence 1112211111 1111111 1134566676 999999999999 999984 8888888877
No 65
>3mgx_A Putative P450 monooxygenase; cytochrome P450 oxidase, HAEM protein, vancomycin biosynthes carrier protein, oxidoreductase; HET: HEM; 2.10A {Amycolatopsis balhimycina}
Probab=99.33 E-value=3.5e-12 Score=100.61 Aligned_cols=97 Identities=16% Similarity=0.184 Sum_probs=74.6
Q ss_pred CCchHHHHHHHHhhCCeEEEEcCC--cCEEEecCHHHHHHHHHHcCccCCCCCChHHHHH---hhcC-CcceeeCCCChH
Q 040924 29 SKPHVLFWELSKKYGPLMSLRLGF--SPSLVVSSAKMAKEILKTHDLQFCSRPALVAQQK---LSYN-GLDLAFSPYDEY 102 (208)
Q Consensus 29 ~~~~~~~~~~~~~yG~v~~~~~~~--~~~v~i~dp~~~~~i~~~~~~~~~~~~~~~~~~~---~~~~-~~~l~~~~~g~~ 102 (208)
++++..+.++.+ ||||+++...+ .+.++|++++.+++|+.+ .+.|.+++....... .... +.++++++ |+.
T Consensus 37 ~dp~~~~~~lr~-~gpV~~~~~~g~~~~~~vv~~~~~v~~vl~~-~~~fs~~~~~~~~~~~~~~~~~~~~~l~~~d-g~~ 113 (415)
T 3mgx_A 37 LERHARWRELAA-EDAMVWSDPGSSPSGFWSVFSHRACAAVLAP-SAPLTSEYGMMIGFDRDHPDNSGGRMMVVSE-HEQ 113 (415)
T ss_dssp TTHHHHHHHHHH-HTCCEEECSSSSSSCEEEECSHHHHHHHSCT-TSSEECTTCSSTTCCSSSCCTTTTTSGGGCC-HHH
T ss_pred CChhHHHHHHHh-cCCEeeccCCCCcCCEEEEecHHHHHHHHhC-hhhhcCCccccccccccccccccCCCccccC-cHH
Confidence 578888888876 99999986445 789999999999999954 345766543221110 0111 55678787 999
Q ss_pred HHHHHHHHHHHhhccccccccccHHHH
Q 040924 103 WREIRKICAIHLFNSNRGQNFRPIEKM 129 (208)
Q Consensus 103 w~~~Rk~l~~~~f~~~~l~~~~~~~~~ 129 (208)
|+++|++++ ++|+.+.++.+.+.+.+
T Consensus 114 h~~~R~~~~-~~fs~~~l~~~~~~i~~ 139 (415)
T 3mgx_A 114 HRKLRKLVG-PLLSRAAARKLAERVRI 139 (415)
T ss_dssp HHHHHHHHG-GGSSHHHHHHSHHHHHH
T ss_pred HHHHHHHhH-hhhCHHHHHHHHHHHHH
Confidence 999999999 99999999999998887
No 66
>1lfk_A OXYB, P450 monooxygenase; oxidative phenol coupling reaction P450 vancomycin, oxidoreductase; HET: HEM; 1.70A {Amycolatopsis orientalis} SCOP: a.104.1.1 PDB: 1lg9_A* 1lgf_A*
Probab=99.32 E-value=2.2e-12 Score=101.20 Aligned_cols=160 Identities=13% Similarity=0.129 Sum_probs=96.0
Q ss_pred HHHHHhhCCeEEEEcC-Cc---CEEEecCHHHHHHHHHHcCccCCCCCC------hHHHHHh--hcCCcceeeCCCChHH
Q 040924 36 WELSKKYGPLMSLRLG-FS---PSLVVSSAKMAKEILKTHDLQFCSRPA------LVAQQKL--SYNGLDLAFSPYDEYW 103 (208)
Q Consensus 36 ~~~~~~yG~v~~~~~~-~~---~~v~i~dp~~~~~i~~~~~~~~~~~~~------~~~~~~~--~~~~~~l~~~~~g~~w 103 (208)
.+|.++ |||+++.++ +. ++|+++||+.+++|+..+ ..|..++. ....... ...+.++++++ |+.|
T Consensus 20 ~~l~~~-Gpv~~~~~~~g~~~~~~vvv~~~~~v~~vl~~~-~~f~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-g~~~ 96 (398)
T 1lfk_A 20 DELLAA-GALTRVTIGSGADAETHWMATAHAVVRQVMGDH-QQFSTRRRWDPRDEIGGKGIFRPRELVGNLMDYD-PPEH 96 (398)
T ss_dssp HHHHTS-CSEEEEC------CCCEEEECSHHHHHHHHHCT-TTEEECTTCCC-------------CCTTCGGGCC-TTHH
T ss_pred HHHHhc-CCccccccCCCCcccceEEEecHHHHHHHHhhC-cccccccccccccccCCcccccccccccCccccC-CHHH
Confidence 346666 999999865 45 899999999999999333 24655543 1111111 12356888887 9999
Q ss_pred HHHHHHHHHHhhccccccccccHHHH---HHHHHhc--C-hhHHHHHh----------hhcc--------cccccccccc
Q 040924 104 REIRKICAIHLFNSNRGQNFRPIEKM---NLIHQQA--S-RPLFVELV----------LARG--------YFPFIGWIDK 159 (208)
Q Consensus 104 ~~~Rk~l~~~~f~~~~l~~~~~~~~~---~~l~~~~--~-~~~~~~~~----------~~~~--------~~p~l~~l~~ 159 (208)
+++|++++ ++|+.+.++.+.+.+.+ +.++.+. + ..++...+ ..+. +..+...+..
T Consensus 97 ~~~R~~~~-~~fs~~~l~~~~~~i~~~~~~l~~~l~~~~~~~d~~~~~~~~~~~~vi~~~~G~~~~~~~~~~~~~~~~~~ 175 (398)
T 1lfk_A 97 TRLRRKLT-PGFTLRKMQRMAPYIEQIVNDRLDEMERAGSPADLIAFVADKVPGAVLCELVGVPRDDRDMFMKLCHGHLD 175 (398)
T ss_dssp HHHHHHHG-GGGCHHHHHHHHHHHHHHHHHHHHHHHHHCSSEEHHHHTTTTHHHHHHHHHHTCCGGGHHHHHHHHHHTTC
T ss_pred HHHHHHHH-hhhCHHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHh
Confidence 99999999 99999999999998887 3333321 1 11111111 0000 0011111111
Q ss_pred ccchhhhhhhhHHHHHHHHHHHHHHhhcccccchhccccccHHHhhhc
Q 040924 160 LTGMLQRPQNNFQEIDRVYQELIDKHLDPNRAKIEQLQQEDVIDVLLQ 207 (208)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~l~~ll~ 207 (208)
.++..++..++...+.+++.++|+++++.. . .|+++.|++
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~i~~r~~~~------~--~dll~~ll~ 215 (398)
T 1lfk_A 176 ASLSQKRRAALGDKFSRYLLAMIARERKEP------G--EGMIGAVVA 215 (398)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHHHHHHSC------C--SSHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHhCC------C--CCHHHHHHH
Confidence 122235667778889999999998887641 2 578877763
No 67
>3rwl_A Cytochrome P450 alkane hydroxylase 1 CYP153A7; P450 monooxygenase, oxidoreductase; HET: HEM; 2.00A {Sphingopyxis macrogoltabida}
Probab=99.27 E-value=6.1e-11 Score=93.78 Aligned_cols=168 Identities=11% Similarity=0.079 Sum_probs=104.6
Q ss_pred CCchHHHHHHHHhhCCeEEEEc-CCcCEEEecCHHHHHHHHHHcCccCCCCCC---hHHH------HHhhcCCcceeeCC
Q 040924 29 SKPHVLFWELSKKYGPLMSLRL-GFSPSLVVSSAKMAKEILKTHDLQFCSRPA---LVAQ------QKLSYNGLDLAFSP 98 (208)
Q Consensus 29 ~~~~~~~~~~~~~yG~v~~~~~-~~~~~v~i~dp~~~~~i~~~~~~~~~~~~~---~~~~------~~~~~~~~~l~~~~ 98 (208)
++++..+.++.++ |||+++.. ++.+.++|++++.+++|+.+. ..|.+++. .... ......+.++++++
T Consensus 38 ~~p~~~~~~lr~~-gpv~~~~~~~~~~~~vvt~~~~v~~vl~d~-~~fs~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d 115 (426)
T 3rwl_A 38 DSVGEYFKRLRKD-DPVHYCADSAFGPYWSITKYNDIMHVDTNH-DIFSSDAGYGGIIIDDGIQKGGDGGLDLPNFIAMD 115 (426)
T ss_dssp TCHHHHHHHHHHH-CSEEEESCCTTCSEEEECSHHHHHHHHHCT-TTEECCGGGTCSSSSCCC-------CCCCCGGGCC
T ss_pred CCccHHHHHHHhc-CCeeeccCCCCCCEEEEcCHHHHHHHHcCC-cccccccccCCCCcccccccccccccccCcccccC
Confidence 4688888888875 99999976 456799999999999999754 34544321 0000 00112346788887
Q ss_pred CChHHHHHHHHHHHHhhccccccccccHHHH---HHHHHhcC------hhHHHHHh------hhcc--------cccccc
Q 040924 99 YDEYWREIRKICAIHLFNSNRGQNFRPIEKM---NLIHQQAS------RPLFVELV------LARG--------YFPFIG 155 (208)
Q Consensus 99 ~g~~w~~~Rk~l~~~~f~~~~l~~~~~~~~~---~~l~~~~~------~~~~~~~~------~~~~--------~~p~l~ 155 (208)
|+.|+++|++++ ++|+.+.++.+.+.+.+ +.++.+.+ ..++...+ .++. +..|..
T Consensus 116 -g~~h~~~R~~~~-~~fs~~~l~~~~~~i~~~~~~ll~~l~~~~~~dl~~~~~~~~~~~vi~~l~G~~~~~~~~~~~~~~ 193 (426)
T 3rwl_A 116 -RPRHDEQRKAVS-PIVAPANLAALEGTIRERVSKTLDGLPVGEEFDWVDRVSIEITTQMLATLFDFPFEERRKLTRWSD 193 (426)
T ss_dssp -TTHHHHHHHHHG-GGGCHHHHHHHHHHHHHHHHHHHHTSCSSSCEEHHHHTHHHHHHHHHHHHHTCCGGGTHHHHHHHH
T ss_pred -chHHHHHHHHhh-hhhCHHHHHHHHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 999999999999 99999999999998888 44454431 11111111 0000 000100
Q ss_pred ---cc--ccccchhhhhhhhHHHHHHHHHHHHHHhhcccccchhccccccHHHhhhc
Q 040924 156 ---WI--DKLTGMLQRPQNNFQEIDRVYQELIDKHLDPNRAKIEQLQQEDVIDVLLQ 207 (208)
Q Consensus 156 ---~l--~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~l~~ll~ 207 (208)
.+ +......+...++...+.+++.++|+++++. ... .|+++.|++
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~r~~~-----~~~--~dll~~ll~ 243 (426)
T 3rwl_A 194 VTTAAPGGGVVESWDQRKTELLECAAYFQVLWNERVNK-----DPG--NDLISMLAH 243 (426)
T ss_dssp HHTCCTTSSSCSSHHHHHHHHHHHHHHHHHHHHHHHTS-----CCC--SSHHHHHHH
T ss_pred HHHhccCccccccHHHHHHHHHHHHHHHHHHHHHHhhc-----CCC--CCHHHHHHh
Confidence 00 0001224455667788899999999888432 112 678877764
No 68
>2xbk_A PIMD protein; epoxidation, oxidoreductase; HET: HEM XBK; 1.95A {Streptomyces natalensis} PDB: 2x9p_A*
Probab=99.21 E-value=1.7e-11 Score=96.30 Aligned_cols=96 Identities=18% Similarity=0.211 Sum_probs=76.1
Q ss_pred CCCchHHHHHHHHhhCCeEEEEc-CCcCEEEecCHHHHHHHHHHcCccCCCCCChH-HHHHhhcCCcc--eeeCCCC---
Q 040924 28 VSKPHVLFWELSKKYGPLMSLRL-GFSPSLVVSSAKMAKEILKTHDLQFCSRPALV-AQQKLSYNGLD--LAFSPYD--- 100 (208)
Q Consensus 28 ~~~~~~~~~~~~~~yG~v~~~~~-~~~~~v~i~dp~~~~~i~~~~~~~~~~~~~~~-~~~~~~~~~~~--l~~~~~g--- 100 (208)
..+++..+.++ ++||||+++++ ++.+.|+|+||+.+++|+.+. .|.+++... ..... ..+.+ +++++ |
T Consensus 25 ~~~p~~~~~~l-~~yGpv~~~~~~~~~~~vvv~~~~~v~~vl~~~--~f~~~~~~~~~~~~~-~~~~~~~l~~~~-g~~~ 99 (404)
T 2xbk_A 25 MLKLSPLLRAL-QDRGPIHRVRTPAGDEAWLVTRHAELKQLLHDE--RIGRTHPDPPSAAQY-VRSPFLDLLISD-ADAE 99 (404)
T ss_dssp TTBCCHHHHHH-HHHCSEEEEECTTSCEEEEECSHHHHHHHTTCT--TEESBCSSGGGSCCS-SCCHHHHTTCBC-SCHH
T ss_pred ccCccHHHHHH-HhhCCEeeeccCCCceEEEEcCHHHHHHHHcCC--CCCCCccccccCCcc-cccccccceeeC-CCCC
Confidence 46788899999 89999999997 788999999999999999753 465554321 11111 12455 77777 9
Q ss_pred ---hHHHHHHHHHHHHhhccccccccccHHHH
Q 040924 101 ---EYWREIRKICAIHLFNSNRGQNFRPIEKM 129 (208)
Q Consensus 101 ---~~w~~~Rk~l~~~~f~~~~l~~~~~~~~~ 129 (208)
+.|+++|++++ ++|+.+.++.+.+.+.+
T Consensus 100 ~~~~~h~~~R~~~~-~~fs~~~l~~~~~~i~~ 130 (404)
T 2xbk_A 100 SGRRQHAETRRLLT-PLFSARRVLEMQPKVEE 130 (404)
T ss_dssp HHHHHHHHHHHHHG-GGGCHHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHhh-hhcCHHHHHHHHHHHHH
Confidence 99999999999 99999999999998887
No 69
>3p3o_A Cytochrome P450; monooxygenase, oxidoreductase; HET: HEM; 1.54A {Streptomyces thioluteus} PDB: 3p3x_A* 3p3z_A* 3p3l_A*
Probab=99.19 E-value=3.9e-11 Score=94.63 Aligned_cols=165 Identities=13% Similarity=0.030 Sum_probs=102.5
Q ss_pred CCCchHHHHHHHHhhCCeEEEEcCCcCEEEecCHHHHHHHHHHcCccCCCCCC-hHHHHH------hhcCCcceeeCCCC
Q 040924 28 VSKPHVLFWELSKKYGPLMSLRLGFSPSLVVSSAKMAKEILKTHDLQFCSRPA-LVAQQK------LSYNGLDLAFSPYD 100 (208)
Q Consensus 28 ~~~~~~~~~~~~~~yG~v~~~~~~~~~~v~i~dp~~~~~i~~~~~~~~~~~~~-~~~~~~------~~~~~~~l~~~~~g 100 (208)
..+++.. ++.++|||++++.+++.. ++|++++.+++|+.+.. +..... ...... ....+.++++++ |
T Consensus 32 ~~~P~~~--~~lr~~gpv~~~~~g~~~-~vv~~~~~v~~vL~d~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d-g 105 (416)
T 3p3o_A 32 PNFSWDS--PEVAEAREKSWIARTPLA-LLVLRYAEADQLARDKR--LISGFRGLVDMVGTPEGPVRDFMVDFLQSLD-G 105 (416)
T ss_dssp TTCCTTS--HHHHHHHHHCSEEECSSS-EEECSHHHHHHHHHCTT--EECSHHHHHHHHTCCSSHHHHHHHHSGGGCC-H
T ss_pred ccCCchH--HHHHHhCCccccccCCCc-eEEeCHHHHHHHHcCcc--cccCCccccccccccccchhhhhcCccccCC-c
Confidence 3567766 566679999999886656 89999999999997643 322111 000000 001145788887 9
Q ss_pred hHHHHHHHHHHHHhhccccccccccHHHH---HHHHHhc-Ch----hHHH---------HHh--h---hcccccccccc-
Q 040924 101 EYWREIRKICAIHLFNSNRGQNFRPIEKM---NLIHQQA-SR----PLFV---------ELV--L---ARGYFPFIGWI- 157 (208)
Q Consensus 101 ~~w~~~Rk~l~~~~f~~~~l~~~~~~~~~---~~l~~~~-~~----~~~~---------~~~--~---~~~~~p~l~~l- 157 (208)
+.|+++|++++ ++|+.+.++.+.+.+.+ +.++.+. +. .++. .++ . ...+..|...+
T Consensus 106 ~~h~~~Rr~~~-~~fs~~~l~~~~~~i~~~~~~ll~~l~~g~~d~~~~~~~~~~~~vi~~l~G~~~~~~~~~~~~~~~~~ 184 (416)
T 3p3o_A 106 ADHRRLRGLAT-HPFTPRRITAVQPFVRSTVEQLIDKLPQGDFDFVQHFPHPLPALVMCQLLGFPLEDYDTVGRLSIETN 184 (416)
T ss_dssp HHHHHHHHTTC-GGGSHHHHHHHHHHHHHHHHHHHHTCCSSSEEHHHHTTTHHHHHHHHHHHTCCGGGHHHHHHHHHTTC
T ss_pred hHHHHHHHHHH-HhhCHHHHHHHHHHHHHHHHHHHHhhccCCccHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 99999999999 99999999999999888 4444431 20 1111 111 0 00000011000
Q ss_pred ---c--cccchhhhhhhhHHHHHHHHHHHHHHhhcccccchhccccccHHHhhhc
Q 040924 158 ---D--KLTGMLQRPQNNFQEIDRVYQELIDKHLDPNRAKIEQLQQEDVIDVLLQ 207 (208)
Q Consensus 158 ---~--~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~l~~ll~ 207 (208)
. ......++..++...+.+++.++|+++++.. . .|+++.|++
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~rr~~~------~--~dll~~ll~ 231 (416)
T 3p3o_A 185 LGLALSNDQDILVKVEQGLGRMFDYLVAAIEKRKVEP------G--DDLTSDIVR 231 (416)
T ss_dssp GGGTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHSC------C--SSHHHHHHH
T ss_pred hhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHhCC------C--ccHHHHHHH
Confidence 0 0123356677888889999999999887652 2 577777763
No 70
>3b4x_A 367AA long hypothetical cytochrome P450; HEM protein, heme, iron, metal-binding, monooxygenase, oxidoreductase; HET: HEM; 1.94A {Sulfolobus tokodaii} PDB: 1ue8_A*
Probab=99.15 E-value=3.1e-10 Score=88.01 Aligned_cols=156 Identities=13% Similarity=0.133 Sum_probs=95.8
Q ss_pred hHHHHHHHHhhCCeEEEEcCCcCEEEecCHHHHHHHHHHcCccCCCCCC-hH-HH-----H-HhhcC---CcceeeCCCC
Q 040924 32 HVLFWELSKKYGPLMSLRLGFSPSLVVSSAKMAKEILKTHDLQFCSRPA-LV-AQ-----Q-KLSYN---GLDLAFSPYD 100 (208)
Q Consensus 32 ~~~~~~~~~~yG~v~~~~~~~~~~v~i~dp~~~~~i~~~~~~~~~~~~~-~~-~~-----~-~~~~~---~~~l~~~~~g 100 (208)
+..+.++ ++||||+++. | .+++++|+.+++||.+. +.|.+++. .. .. . .+. + +.|+++++ |
T Consensus 2 ~~~~~~l-r~~gpv~~~~-g---~~vv~~~~~v~~vl~~~-~~f~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~d-g 73 (367)
T 3b4x_A 2 YDWFKQM-RKESPVYYDG-K---VWNLFKYEDCKMVLNDH-KRFSSNLTGYNDKLEMLRSGKVFF-DIPTRYTMLTSD-P 73 (367)
T ss_dssp HHHHHHH-HHHCSEEECS-S---SEEECSHHHHHHHHHCT-TTEECCCSSTTTTHHHHHHTCCCC-CCGGGSSGGGCC-T
T ss_pred CHHHHHH-HHcCCceeeC-C---EEEEecHHHHHHHHcCc-hhhccCcccccccccccccccchh-hcccccccccCC-c
Confidence 4556666 5799999886 3 89999999999999764 46766632 21 11 1 111 2 27888887 9
Q ss_pred hHHHHHHHHHHHHhhccccccccccHHHH---HHHHHhcChhHHHH-H--------h-hhc---c----ccccccc----
Q 040924 101 EYWREIRKICAIHLFNSNRGQNFRPIEKM---NLIHQQASRPLFVE-L--------V-LAR---G----YFPFIGW---- 156 (208)
Q Consensus 101 ~~w~~~Rk~l~~~~f~~~~l~~~~~~~~~---~~l~~~~~~~~~~~-~--------~-~~~---~----~~p~l~~---- 156 (208)
+.|+++|++++ ++|+.+.++. +.+.+ +.++.+.|.-++.. + + .++ . +..+...
T Consensus 74 ~~h~~~R~~~~-~~fs~~~l~~--~~i~~~~~~l~~~l~g~~d~~~~~~~~~~~~vi~~~~G~~~~~~~~~~~~~~~~~~ 150 (367)
T 3b4x_A 74 PLHDELRNLTA-DAFNPSNLPV--DFVREVTVKLLSELDEEFDVIESFAIPLPILVISKMLGINPDVKKVKDWSDLVALR 150 (367)
T ss_dssp THHHHHHHTTG-GGGSGGGSCH--HHHHHHHHHHHHTCCSEEEHHHHTTTHHHHHHHHHHHTCCCCHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHH-HhcCHhhhcc--hHHHHHHHHHHHhccCCcchHHHHHHhhHHHHHHHHcCCCCcHHHHHHHHHHHHhc
Confidence 99999999999 9999999987 77776 33443322011110 0 0 000 0 0000000
Q ss_pred cccccchhhhhhhhHHHHHHHHHHHHHHhhcccccchhccccccHHHhhhc
Q 040924 157 IDKLTGMLQRPQNNFQEIDRVYQELIDKHLDPNRAKIEQLQQEDVIDVLLQ 207 (208)
Q Consensus 157 l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~l~~ll~ 207 (208)
+...+...+.. ++...+.+++.++|+++++. . . .|+++.|++
T Consensus 151 ~~~~p~~~~~~-~~~~~~~~~~~~~i~~r~~~-----~-~--~dll~~ll~ 192 (367)
T 3b4x_A 151 LGRADEIFSIG-RKYLELISFSKKELDSRKGK-----E-I--VDLTGKIAN 192 (367)
T ss_dssp TTSTTGGGCCC-HHHHHHHHHHHHHHHHHTTT-----C-C--SSHHHHHHT
T ss_pred cCCChhhHHHH-HHHHHHHHHHHHHHHHHhcC-----C-C--CCHHHHHHh
Confidence 00011112333 67778889999999888764 1 2 688888875
No 71
>2wiy_A XPLA-heme, cytochrome P450-like protein XPLA; CYT-P450, RDX, bioremediation, electron transport; HET: HEM; 1.49A {Rhodococcus} PDB: 2wiv_A*
Probab=99.06 E-value=4.6e-10 Score=87.86 Aligned_cols=93 Identities=12% Similarity=0.075 Sum_probs=67.5
Q ss_pred CCchHHHHHHHHhhCCeEEEEcCCcCEEEecCHHHHHHHHHHcCccCCCCCChHHHHHhhcCCcceeeCCCChHHHHHHH
Q 040924 29 SKPHVLFWELSKKYGPLMSLRLGFSPSLVVSSAKMAKEILKTHDLQFCSRPALVAQQKLSYNGLDLAFSPYDEYWREIRK 108 (208)
Q Consensus 29 ~~~~~~~~~~~~~yG~v~~~~~~~~~~v~i~dp~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~w~~~Rk 108 (208)
.+++..+.++.+ +|||+++.. ..+++++++.+++++.+ ..|..++...........+.++++++ |+.|+++|+
T Consensus 20 ~dp~~~~~~lr~-~~pv~~~~~---g~~~v~~~~~v~~~l~d--~~fs~~~~~~~~~~~~~~~~~l~~~d-g~~h~~~R~ 92 (394)
T 2wiy_A 20 NNPYPWYRRLQQ-DHPVHKLED---GTYLVSRYADVSHFAKL--PIMSVEPGWADAGPWAVASDTALGSD-PPHHTVLRR 92 (394)
T ss_dssp HCCHHHHHHHHH-HCSEEECTT---SCEEECCHHHHHHHTTS--TTEECHHHHHTCGGGGGGGGSGGGCC-TTHHHHHHH
T ss_pred cCccHHHHHHHh-cCCeEEecC---CeEEEcCHHHHHHHHcC--CCccccccccccccchhcccccccCC-chHHHHHHH
Confidence 467888877765 589987753 37889999999999954 24443321110111112246788777 999999999
Q ss_pred HHHHHhhccccccccccHHHH
Q 040924 109 ICAIHLFNSNRGQNFRPIEKM 129 (208)
Q Consensus 109 ~l~~~~f~~~~l~~~~~~~~~ 129 (208)
+++ ++|+++.++.+.+.+.+
T Consensus 93 ~~~-~~fs~~~~~~~~~~i~~ 112 (394)
T 2wiy_A 93 QTN-KWFTPKLVDGWVRTTRE 112 (394)
T ss_dssp HHH-TTCSHHHHHHHTHHHHH
T ss_pred HHH-hccCHHHHHHHHHHHHH
Confidence 999 99999999999998887
No 72
>1io7_A Cytochrome P450 CYP119; thermophilic, cytochromo P450, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: HEM; 1.50A {Sulfolobus solfataricus} SCOP: a.104.1.1 PDB: 1f4u_A* 1f4t_A* 1io9_A* 1io8_A*
Probab=98.96 E-value=4.3e-10 Score=87.22 Aligned_cols=90 Identities=20% Similarity=0.213 Sum_probs=68.4
Q ss_pred hHHHHHHHHhhCCeEEEEcCCcCEEEecCHHHHHHHHHHcCccCCCCCC--hHHHH-----H--hhc-CCcceeeCCCCh
Q 040924 32 HVLFWELSKKYGPLMSLRLGFSPSLVVSSAKMAKEILKTHDLQFCSRPA--LVAQQ-----K--LSY-NGLDLAFSPYDE 101 (208)
Q Consensus 32 ~~~~~~~~~~yG~v~~~~~~~~~~v~i~dp~~~~~i~~~~~~~~~~~~~--~~~~~-----~--~~~-~~~~l~~~~~g~ 101 (208)
+..+.++ ++||||+++ + +.++++||+.+++||.+. +.|.+++. ...+. . ... .|.++++++ |+
T Consensus 2 ~~~~~~l-r~~Gpv~~~---g-~~~vv~~~~~v~~vl~~~-~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-g~ 74 (368)
T 1io7_A 2 YDWFSEM-RKKDPVYYD---G-NIWQVFSYRYTKEVLNNF-SKFSSDLTGYHERLEDLRNGKIRFDIPTRYTMLTSD-PP 74 (368)
T ss_dssp HHHHHHH-HHHCSEEEC---S-SCEEECSHHHHHHHHHCT-TTEECCCSSHHHHHHHHTTTCCCCSCGGGSSGGGCC-TT
T ss_pred CHHHHHH-HhcCCeEeE---C-CEEEEecHHHHHHHHcCc-ccccccccccccccccccccccccccccccccccCC-Ch
Confidence 4556666 589999987 3 589999999999999764 46777764 11111 1 110 126788887 99
Q ss_pred HHHHHHHHHHHHhhccccccccccHHHH
Q 040924 102 YWREIRKICAIHLFNSNRGQNFRPIEKM 129 (208)
Q Consensus 102 ~w~~~Rk~l~~~~f~~~~l~~~~~~~~~ 129 (208)
.|+++|++++ ++|+.+.++.+.+.+.+
T Consensus 75 ~h~~~R~~~~-~~f~~~~~~~~~~~i~~ 101 (368)
T 1io7_A 75 LHDELRSMSA-DIFSPQKLQTLETFIRE 101 (368)
T ss_dssp HHHHHHGGGT-TTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-hhcCHHHHHHHHHHHHH
Confidence 9999999999 99999999999998887
No 73
>1n40_A P450 MT2, cytochrome P450 121; heme binding, oxygen binding, P450 fold, structural genomics, PSI, protein structure initiative; HET: HEM; 1.06A {Mycobacterium tuberculosis} SCOP: a.104.1.1 PDB: 1n4g_A* 2ij5_A* 2ij7_A* 3g5f_A* 3g5h_A* 3cy0_A* 3cy1_A* 3cxv_A* 3cxx_A* 3cxz_A* 3cxy_A*
Probab=98.92 E-value=3.2e-10 Score=88.76 Aligned_cols=93 Identities=13% Similarity=0.100 Sum_probs=70.8
Q ss_pred CCCchHHHHHHHHhhCCeEEEEc-CCcCEEEecCHHHHHHHHHHcCccCC-C-CCCh--HHHH--Hhhc-CCcceeeCCC
Q 040924 28 VSKPHVLFWELSKKYGPLMSLRL-GFSPSLVVSSAKMAKEILKTHDLQFC-S-RPAL--VAQQ--KLSY-NGLDLAFSPY 99 (208)
Q Consensus 28 ~~~~~~~~~~~~~~yG~v~~~~~-~~~~~v~i~dp~~~~~i~~~~~~~~~-~-~~~~--~~~~--~~~~-~~~~l~~~~~ 99 (208)
..+++..+.+| ++||||+++++ ++.+.|+++||+.+++||.++ .|. + ++.. .... .+.. .+.+++++
T Consensus 15 ~~~p~~~~~~l-~~yGpv~~~~~~g~~~~vvv~~~~~v~~vl~~~--~f~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-- 89 (396)
T 1n40_A 15 GDRIPDAVAEL-RTREPIRKVRTITGAEAWLVSSYALCTQVLEDR--RFSMKETAAAGAPRLNALTVPPEVVNNMGNI-- 89 (396)
T ss_dssp SSSCCHHHHHH-HHHCSEEEEECTTSCEEEEECSHHHHHHHHTCT--TEESGGGGSTTCCCSSCCSSCGGGGGHHHHH--
T ss_pred ccCccHHHHHH-HHhCCeeEeecCCCceEEEEecHHHHHHHHhCC--CcccccCccccccccccccCCchhhhhhhhH--
Confidence 56789999999 99999999997 788899999999999999754 354 3 3221 1010 0110 24566655
Q ss_pred ChHHHHHHHHHHHHhhccccccccccHHHH
Q 040924 100 DEYWREIRKICAIHLFNSNRGQNFRPIEKM 129 (208)
Q Consensus 100 g~~w~~~Rk~l~~~~f~~~~l~~~~~~~~~ 129 (208)
.|+++|++++ ++|+.+ ++.+.+.+.+
T Consensus 90 --~h~~~R~~~~-~~fs~~-~~~~~~~i~~ 115 (396)
T 1n40_A 90 --ADAGLRKAVM-KAITPK-APGLEQFLRD 115 (396)
T ss_dssp --HHTTCHHHHH-HHTSSC-STTHHHHHHH
T ss_pred --HHHHHHHHHH-HhhChH-HHHhHHHHHH
Confidence 8999999999 999999 9999998887
No 74
>2rfb_A Cytochrome P450; heme, iron, metal-binding, monooxygenase, oxidoreductase; HET: HEM; 2.50A {Picrophilus torridus} PDB: 2rfc_A*
Probab=98.92 E-value=5.4e-10 Score=85.85 Aligned_cols=78 Identities=17% Similarity=0.205 Sum_probs=62.1
Q ss_pred HhhCCeEEEEcCCcCEEEecCHHHHHHHHHHcCccCCCCCC-hHHHHHhhcCCcceeeCCCChHHHHHHHHHHHHhhccc
Q 040924 40 KKYGPLMSLRLGFSPSLVVSSAKMAKEILKTHDLQFCSRPA-LVAQQKLSYNGLDLAFSPYDEYWREIRKICAIHLFNSN 118 (208)
Q Consensus 40 ~~yG~v~~~~~~~~~~v~i~dp~~~~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~g~~w~~~Rk~l~~~~f~~~ 118 (208)
++||||+++ | .++++||+.+++||.+. +.|.+++. ... .. .+.++++++ |+.|+++|++++ ++|+.+
T Consensus 2 r~~gpv~~~---g--~~vv~~~~~v~~vl~~~-~~f~~~~~~~~~-~~---~~~~l~~~~-g~~~~~~R~~~~-~~fs~~ 69 (343)
T 2rfb_A 2 RLNDPVHYD---G--AWHVYKYSDVKHVLMND-KIFSSNPGNRYS-NA---GGISFITMD-NPEHKEFRDISA-PYFLPS 69 (343)
T ss_dssp -CCCCEEET---T--EEEECSHHHHHHHHHCT-TTEESSCSSCCC-------CCGGGGCC-HHHHHHHHHHHH-HHHSHH
T ss_pred CCcCCeeee---C--eEEEcCHHHHHHHHhCh-hhcccCCcCCCC-Cc---cccccccCC-chHHHHHHHHhh-hhcCHH
Confidence 579999876 3 89999999999999765 46766652 111 11 367888887 999999999999 999999
Q ss_pred cccccccHHHH
Q 040924 119 RGQNFRPIEKM 129 (208)
Q Consensus 119 ~l~~~~~~~~~ 129 (208)
.++.+.+.+.+
T Consensus 70 ~l~~~~~~i~~ 80 (343)
T 2rfb_A 70 KINDYKDFIEE 80 (343)
T ss_dssp HHGGGHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999998887
No 75
>4dxy_A Cytochrome P450, CYP101D2; cytochrome P450 mutant, HAEM-dependent, mono-oxygenases, oxidoreductase; HET: HEM; 2.00A {Novosphingobium aromaticivorans} PDB: 3nv6_A* 3nv5_A*
Probab=98.88 E-value=3.7e-08 Score=77.63 Aligned_cols=104 Identities=12% Similarity=0.031 Sum_probs=66.7
Q ss_pred CCchHHHHHHHHhhCCeEEEEc-CCcCEEEecCHHHHHHHHHHcCccCCCCCChHHHHHhhcCCcceeeCCCChHHHHHH
Q 040924 29 SKPHVLFWELSKKYGPLMSLRL-GFSPSLVVSSAKMAKEILKTHDLQFCSRPALVAQQKLSYNGLDLAFSPYDEYWREIR 107 (208)
Q Consensus 29 ~~~~~~~~~~~~~yG~v~~~~~-~~~~~v~i~dp~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~w~~~R 107 (208)
.+++..+.++.+. |++-.+|. .+....+|+.++.+++|+.+. +.|++................++..| |++|+++|
T Consensus 37 ~~~~~~~~~lr~~-~~~~~~~~~~~gg~W~vtr~~dv~~vl~d~-~~fs~~~~~~~~~~~~~~~~~~~~~D-~p~H~r~R 113 (417)
T 4dxy_A 37 DGYHEAWKKVQHP-GIPDLIWTPFTGGHWIATNGDTVKEVYSDP-TRFSSEVIFLPKEAGEKAQMVPTKMD-PPEHTPYR 113 (417)
T ss_dssp GCHHHHHHHHSCT-TCCSEEEESSTTSEEEECSHHHHHHHHTCT-TTEESSCCSSSTTSSCSSCTTTTTCC-TTTHHHHH
T ss_pred cChHHHHHHHHhh-CCCCEEecCCCCCEEEECCHHHHHHHHcCc-hhccCCCcccccccccccccCcccCC-cHHHHHHH
Confidence 4566777666654 53222332 223567789999999999643 35644322111111111223455566 99999999
Q ss_pred HHHHHHhhccccccccccHHHH---HHHHHhc
Q 040924 108 KICAIHLFNSNRGQNFRPIEKM---NLIHQQA 136 (208)
Q Consensus 108 k~l~~~~f~~~~l~~~~~~~~~---~~l~~~~ 136 (208)
++++ ++|+++.++.+.+.+.+ +.++++.
T Consensus 114 rll~-~~Fs~~~l~~~~~~i~~~~~~lld~l~ 144 (417)
T 4dxy_A 114 KALD-KGLNLAKIRKVEDKVREVASSLIDSFA 144 (417)
T ss_dssp HHHH-HHHCHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHhh-hhcCHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999 99999999999999888 4455543
No 76
>4dnj_A Putative cytochrome P450; oxidoreductase; HET: HEM ANN; 1.80A {Rhodopseudomonas palustris} PDB: 2fr7_A* 4do1_A* 4dnz_A*
Probab=98.71 E-value=1.8e-08 Score=79.28 Aligned_cols=108 Identities=15% Similarity=0.122 Sum_probs=73.7
Q ss_pred CCCccccc---cccCCCCCchHHHHHHHHhhCCeEEEEcCCcCEEEecCHHHHHHHHHHcCccCCCCCChH---HHHHh-
Q 040924 15 WGLPFIGT---LHQLDVSKPHVLFWELSKKYGPLMSLRLGFSPSLVVSSAKMAKEILKTHDLQFCSRPALV---AQQKL- 87 (208)
Q Consensus 15 ~~~p~~g~---~~~~~~~~~~~~~~~~~~~yG~v~~~~~~~~~~v~i~dp~~~~~i~~~~~~~~~~~~~~~---~~~~~- 87 (208)
.++|.+|- -..+ ..+++..+.++. ++|||+++ .+...++|++++.+++||.+. ..|.+..... .....
T Consensus 18 ~~~P~~~~dp~~~~~-~~dP~~~~~~lR-~~gPV~~~--~~~~~~~vt~~~~v~~vl~d~-~~fs~~~~~~~~~~~~~~~ 92 (412)
T 4dnj_A 18 AGVPHLGIDPFALDY-FADPYPEQETLR-EAGPVVYL--DKWNVYGVARYAEVYAVLNDP-LTFCSSRGVGLSDFKKEKP 92 (412)
T ss_dssp TTSCEECCCTTSHHH-HHSCHHHHHHHH-HHCSSEEE--TTTTEEEECSHHHHHHHHTCT-TTEESTTCSSSSCTTTSCC
T ss_pred CCCCccCCCCCCHHH-HhCcHHHHHHHH-hcCCEEEE--CCCCEEEECCHHHHHHHHcCC-ccccCCCcccccccccccc
Confidence 35676652 1112 357888887765 57999754 556789999999999999643 3443221110 01111
Q ss_pred hcCCcceeeCCCChHHHHHHHHHHHHhhccccccccccHHHH
Q 040924 88 SYNGLDLAFSPYDEYWREIRKICAIHLFNSNRGQNFRPIEKM 129 (208)
Q Consensus 88 ~~~~~~l~~~~~g~~w~~~Rk~l~~~~f~~~~l~~~~~~~~~ 129 (208)
...+.+++++| |+.|+++|++++ ++|+.+.++.+.+.+.+
T Consensus 93 ~~~~~~~~~~D-g~~H~r~R~~~~-~~Fs~~~l~~~~~~i~~ 132 (412)
T 4dnj_A 93 WRPPSLILEAD-PPAHTRTRAVLS-KVLSPATMKRLRDGFAA 132 (412)
T ss_dssp SSCCCTTTTCC-TTHHHHHHHHHH-HHTCHHHHHHHHHHHHH
T ss_pred ccCCCccccCC-hHHHHHHHhhcc-cccCHHHHHHhhHHHHH
Confidence 11234577777 999999999999 99999999999998888
No 77
>2yjn_B Erycii, DTDP-4-keto-6-deoxy-hexose 3,4-isomerase; transferase, cytochrome P450; 3.09A {Saccharopolyspora erythraea}
Probab=95.45 E-value=0.0032 Score=48.86 Aligned_cols=98 Identities=12% Similarity=0.130 Sum_probs=64.2
Q ss_pred CCCC-CCCCccccccccC----CCCCchHHHHHHHHhhCCeEEEEcCCcCEEEecCHHHHHHHHHHcCccCCCCCC-h-H
Q 040924 10 LPPG-PWGLPFIGTLHQL----DVSKPHVLFWELSKKYGPLMSLRLGFSPSLVVSSAKMAKEILKTHDLQFCSRPA-L-V 82 (208)
Q Consensus 10 ~~pg-p~~~p~~g~~~~~----~~~~~~~~~~~~~~~yG~v~~~~~~~~~~v~i~dp~~~~~i~~~~~~~~~~~~~-~-~ 82 (208)
.||| ++++|++|+...+ ...+++..+.++.++ ||++.. .+.+++++++.+++||.+ ..|.+++. + .
T Consensus 35 ~ppG~~~~~P~~G~~~~~~~~~~~~dp~~~~~~lr~~--pV~~~~---~~~~vv~~~~~v~~vl~d--~~f~~~~~~~~~ 107 (381)
T 2yjn_B 35 MIRGLHWGYGSNGDPYPMLLCGHDDDPQRRYRSMRES--GVRRSR---TETWVVADHATARQVLDD--PAFTRATGRTPE 107 (381)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHTCCSCCHHHHHHHHHH--CEEECS---SSCEEECSHHHHHHHHHC--SSEESSCCCCCH
T ss_pred CCCcccccccccCCchhhcCchhccCchHHHHHHHhC--CceeCC---CCEEEEcCHHHHHHHHcC--CCcCCCcccccc
Confidence 4566 4467999976432 246788889888865 998763 568999999999999975 35654432 1 1
Q ss_pred HHH----HhhcCCcceeeCCCChHHHHHHHHHHHHhhccccccccccHHHH
Q 040924 83 AQQ----KLSYNGLDLAFSPYDEYWREIRKICAIHLFNSNRGQNFRPIEKM 129 (208)
Q Consensus 83 ~~~----~~~~~~~~l~~~~~g~~w~~~Rk~l~~~~f~~~~l~~~~~~~~~ 129 (208)
... .....+.++++++ |+.| + ++|+ . .+.+.+
T Consensus 108 ~~~~~~~~~~~~~~~l~~~d-g~~H-------~-~~Ft-----~-~~~i~~ 143 (381)
T 2yjn_B 108 WMRAAGAPPAEWAQPFRDVH-AASW-------E-GEVP-----D-VGELAE 143 (381)
T ss_dssp HHHHHTCCHHHHTHHHHHHH-HCCC-------C-SCCC-----C-CSCHHH
T ss_pred cccccccccchhhhhhhhCC-chhh-------h-hccC-----C-hHHHHH
Confidence 100 0110135788887 9999 4 8888 2 555555
No 78
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=82.16 E-value=5.1 Score=24.34 Aligned_cols=54 Identities=17% Similarity=0.193 Sum_probs=37.5
Q ss_pred cccccccCCCCCchHHHHHHHHhhCCeEEEEcC--------CcCEEEecCHHHHHHHHHHcCccC
Q 040924 19 FIGTLHQLDVSKPHVLFWELSKKYGPLMSLRLG--------FSPSLVVSSAKMAKEILKTHDLQF 75 (208)
Q Consensus 19 ~~g~~~~~~~~~~~~~~~~~~~~yG~v~~~~~~--------~~~~v~i~dp~~~~~i~~~~~~~~ 75 (208)
++|++.. .-....+.+++..||+|..+.+. |.-.|...+++.++.++..++..+
T Consensus 15 fV~~Lp~---~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~~~~~~~ 76 (103)
T 1s79_A 15 YIKGFPT---DATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPGQKY 76 (103)
T ss_dssp EEECCCT---TCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHTSSCCCC
T ss_pred EEECCCC---CCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHHcCCCEE
Confidence 4566542 34456788999999998887653 234677889999999996433333
No 79
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=76.18 E-value=11 Score=23.04 Aligned_cols=63 Identities=22% Similarity=0.358 Sum_probs=42.1
Q ss_pred CCCCCCCCccccccccCCCCCchHHHHHHHHhhCCeEEEEcC------CcCEEEecCHHHHHHHHHH-cCccC
Q 040924 10 LPPGPWGLPFIGTLHQLDVSKPHVLFWELSKKYGPLMSLRLG------FSPSLVVSSAKMAKEILKT-HDLQF 75 (208)
Q Consensus 10 ~~pgp~~~p~~g~~~~~~~~~~~~~~~~~~~~yG~v~~~~~~------~~~~v~i~dp~~~~~i~~~-~~~~~ 75 (208)
.+|.|...-++||+.. .-....+.+++..||+|..+.+. +.-.|...+++.+...+.. ++..+
T Consensus 3 ~~~~~~~~l~V~nlp~---~~t~~~l~~~F~~~G~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~ 72 (115)
T 3lqv_A 3 LPPEVNRILYIRNLPY---KITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNAVDHLSGFNV 72 (115)
T ss_dssp CCTTCCSEEEEESCCT---TCCHHHHHHHHHTTSCEEEEEEECSTTTTTCEEEEESSHHHHHHHHHHHTTCBS
T ss_pred CCCCCCCEEEEeCCCC---CCCHHHHHHHHHhcCCeEEEEEeeCCCCCcEEEEEECCHHHHHHHHHHcCCCEE
Confidence 4555554456777653 33456788999999999887652 2346778899999888863 44334
No 80
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=73.40 E-value=8.3 Score=21.30 Aligned_cols=43 Identities=16% Similarity=0.205 Sum_probs=31.6
Q ss_pred CchHHHHHHHHhhCCeEEEEcCC---------cCEEEecCHHHHHHHHHHcC
Q 040924 30 KPHVLFWELSKKYGPLMSLRLGF---------SPSLVVSSAKMAKEILKTHD 72 (208)
Q Consensus 30 ~~~~~~~~~~~~yG~v~~~~~~~---------~~~v~i~dp~~~~~i~~~~~ 72 (208)
-....+.+++.+||+|..+.+.. .-.|...+++.++.++...+
T Consensus 11 ~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~ 62 (75)
T 1iqt_A 11 TPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKY 62 (75)
T ss_dssp CCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTTSS
T ss_pred CCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHhCC
Confidence 34567888999999988776531 23577789999999986543
No 81
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=73.02 E-value=10 Score=22.06 Aligned_cols=48 Identities=13% Similarity=0.210 Sum_probs=35.0
Q ss_pred CccccccccCCCCCchHHHHHHHHhhCCeEEEEcC----CcCEEEecCHHHHHHH
Q 040924 17 LPFIGTLHQLDVSKPHVLFWELSKKYGPLMSLRLG----FSPSLVVSSAKMAKEI 67 (208)
Q Consensus 17 ~p~~g~~~~~~~~~~~~~~~~~~~~yG~v~~~~~~----~~~~v~i~dp~~~~~i 67 (208)
.-++|++.. .--...+.+++.+||+|..+.+. |.-.|...+++.++.+
T Consensus 13 ~l~V~~Lp~---~~te~~L~~~F~~~G~i~~v~i~~~srGfaFV~F~~~~~A~~~ 64 (89)
T 3d2w_A 13 KVFVGRCTE---DMTAEELQQFFCQYGEVVDVFIPKPFRAFAFVTFADDKVAQSL 64 (89)
T ss_dssp EEEEESCCT---TCCHHHHHHHHTTTSCEEEEECCSSCCSEEEEEESCHHHHHHH
T ss_pred EEEEeCCCC---CCCHHHHHHHHhccCCEEEEEEeeCCCCEEEEEECCHHHHHHH
Confidence 345677642 34567788999999999988865 3456888899988853
No 82
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=72.90 E-value=10 Score=21.37 Aligned_cols=51 Identities=14% Similarity=0.088 Sum_probs=36.1
Q ss_pred cccccccCCCCC----chHHHHHHHHhhCCeEEEEcC-------CcCEEEecCHHHHHHHHHH
Q 040924 19 FIGTLHQLDVSK----PHVLFWELSKKYGPLMSLRLG-------FSPSLVVSSAKMAKEILKT 70 (208)
Q Consensus 19 ~~g~~~~~~~~~----~~~~~~~~~~~yG~v~~~~~~-------~~~~v~i~dp~~~~~i~~~ 70 (208)
++||++.- ..+ ....+.+++.+||+|..+.+. |.-.|...+++.++..+..
T Consensus 5 ~V~nLp~~-~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~ 66 (81)
T 2krb_A 5 VVDNVPQV-GPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKN 66 (81)
T ss_dssp EEESCCCC-CTTTHHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTT
T ss_pred EEeCCCCC-cHHHHHHHHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHH
Confidence 35666533 222 357788999999999888765 2346777899999999863
No 83
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=69.96 E-value=12 Score=20.68 Aligned_cols=43 Identities=12% Similarity=0.084 Sum_probs=31.0
Q ss_pred CchHHHHHHHHhhCCeEEEEcCC---------cCEEEecCHHHHHHHHHHcC
Q 040924 30 KPHVLFWELSKKYGPLMSLRLGF---------SPSLVVSSAKMAKEILKTHD 72 (208)
Q Consensus 30 ~~~~~~~~~~~~yG~v~~~~~~~---------~~~v~i~dp~~~~~i~~~~~ 72 (208)
-....+.+++.+||+|..+.+.. .-.|...+++.++.++..++
T Consensus 11 ~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~ 62 (75)
T 2mss_A 11 TTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHF 62 (75)
T ss_dssp CCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHSSSC
T ss_pred CCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHCCC
Confidence 34567888999999988776532 23567789999999885433
No 84
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=66.38 E-value=3.8 Score=24.94 Aligned_cols=49 Identities=10% Similarity=0.106 Sum_probs=35.8
Q ss_pred chHHHHHHHHhhCCeEEEEcCCc-CEEEecCHHHHHHHHHH--cCccCCCCC
Q 040924 31 PHVLFWELSKKYGPLMSLRLGFS-PSLVVSSAKMAKEILKT--HDLQFCSRP 79 (208)
Q Consensus 31 ~~~~~~~~~~~yG~v~~~~~~~~-~~v~i~dp~~~~~i~~~--~~~~~~~~~ 79 (208)
-...+.+++..||.+..-|+... -.+++++|+.+++++.. +...|.-+.
T Consensus 18 Kt~Di~~lFs~fggv~I~WidDTsAlvvf~~~~~a~~al~~i~~~~~y~i~t 69 (101)
T 3ctr_A 18 KTSDLYQLFSAFGNIQISWIDDTSAFVSLSQPEQVKIAVNTSKYAESYRIQT 69 (101)
T ss_dssp CHHHHHHHTTTSEEEEEEEEETTEEEEEEEEECHHHHHHHHHTTCSSCCCCC
T ss_pred hhHHHHHHHhccCCEEEEEEcCCeEEEEecCHHHHHHHHHhcccCCceEEEE
Confidence 35677889999997766676543 56888999999999973 345565554
No 85
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=64.51 E-value=21 Score=21.51 Aligned_cols=49 Identities=6% Similarity=-0.052 Sum_probs=36.6
Q ss_pred cccccccCCCCCchHHHHHHHHhhCCeEEEEcC--CcCEEEecCHHHHHHHHHH
Q 040924 19 FIGTLHQLDVSKPHVLFWELSKKYGPLMSLRLG--FSPSLVVSSAKMAKEILKT 70 (208)
Q Consensus 19 ~~g~~~~~~~~~~~~~~~~~~~~yG~v~~~~~~--~~~~v~i~dp~~~~~i~~~ 70 (208)
++||+.. .-..+.+.+++.+||+|..+.+. +.-.|...+++.++..+..
T Consensus 19 ~V~nLp~---~~t~~~l~~~F~~~G~i~~~~i~~~g~afV~f~~~~~a~~Ai~~ 69 (108)
T 1x4c_A 19 VVSGLPP---SGSWQDLKDHMREAGDVCYADVYRDGTGVVEFVRKEDMTYAVRK 69 (108)
T ss_dssp EEESCCS---SCCHHHHHHHHGGGSCEEEEEEETTTEEEEEESSHHHHHHHHHH
T ss_pred EEeCCCC---CCCHHHHHHHHHhcCCEeEEEEecCCEEEEEECCHHHHHHHHHH
Confidence 4566542 34567788999999998887653 4567778899999999864
No 86
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=62.75 E-value=20 Score=21.62 Aligned_cols=60 Identities=17% Similarity=0.163 Sum_probs=42.5
Q ss_pred cccccccCCC-CCchHHHHHHHHhhC-CeEEEEcCCcCEEEecCHHHHHHHHHH-cCccCCCCC
Q 040924 19 FIGTLHQLDV-SKPHVLFWELSKKYG-PLMSLRLGFSPSLVVSSAKMAKEILKT-HDLQFCSRP 79 (208)
Q Consensus 19 ~~g~~~~~~~-~~~~~~~~~~~~~yG-~v~~~~~~~~~~v~i~dp~~~~~i~~~-~~~~~~~~~ 79 (208)
.++|+..=.. ..+...+.+++..|| .|..+ .+|.-+|...+.+.++..+.. ++..+-.|+
T Consensus 13 YV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-tgG~AfV~F~~~esA~~A~~~l~G~~l~gr~ 75 (96)
T 2diu_A 13 YVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-TGCSAILRFINQDSAERAQKRMENEDVFGNR 75 (96)
T ss_dssp EEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-CTTCEEEEESSHHHHHHHHHHHTTCCSSSSC
T ss_pred EEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-ecCEEEEEECCHHHHHHHHHHhcCCccCCce
Confidence 3788765422 223456889999995 98888 568899999999999998853 444444454
No 87
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=61.38 E-value=25 Score=21.47 Aligned_cols=56 Identities=9% Similarity=0.013 Sum_probs=38.8
Q ss_pred cccccccCCCCCchHHHHHHHHhhCCeEEEEcC--CcCEEEecCHHHHHHHHHH-cCccCCC
Q 040924 19 FIGTLHQLDVSKPHVLFWELSKKYGPLMSLRLG--FSPSLVVSSAKMAKEILKT-HDLQFCS 77 (208)
Q Consensus 19 ~~g~~~~~~~~~~~~~~~~~~~~yG~v~~~~~~--~~~~v~i~dp~~~~~i~~~-~~~~~~~ 77 (208)
++||+.. .-..+.+.+++.+||+|..+.+. +.-+|...+++.++.++.. ++..+..
T Consensus 20 ~V~nLp~---~~t~~~l~~~F~~~G~v~~~~i~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g 78 (115)
T 3beg_B 20 VVSGLPP---SGSWQDLKDHMREAGDVCYADVYRDGTGVVEFVRKEDMTYAVRKLDNTKFRS 78 (115)
T ss_dssp EEEECCS---SCCTTHHHHHHGGGSCEEEEEECTTSEEEEEESSHHHHHHHHHHHTTCBCCC
T ss_pred EEeCCCC---CCCHHHHHHHHHhcCCeEEEEEecCCEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 4677653 33456678889999999888764 4566778899999998863 3434433
No 88
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=61.37 E-value=21 Score=21.23 Aligned_cols=49 Identities=20% Similarity=0.105 Sum_probs=34.0
Q ss_pred cccccccCCCCCchHHHHHHHHhhCCeEEEEcCC---------cCEEEecCHHHHHHHHHH
Q 040924 19 FIGTLHQLDVSKPHVLFWELSKKYGPLMSLRLGF---------SPSLVVSSAKMAKEILKT 70 (208)
Q Consensus 19 ~~g~~~~~~~~~~~~~~~~~~~~yG~v~~~~~~~---------~~~v~i~dp~~~~~i~~~ 70 (208)
++||++. .--.+.+.+++.+||+|..+.+.. .-.|...+++.+..++..
T Consensus 23 fV~nLp~---~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~ 80 (99)
T 4fxv_A 23 IVNYLPQ---NMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINT 80 (99)
T ss_dssp EEESCCT---TCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHH
T ss_pred EEeCCCC---CCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHH
Confidence 4556542 334578889999999988776521 125777899999988853
No 89
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=59.23 E-value=26 Score=22.10 Aligned_cols=52 Identities=13% Similarity=0.276 Sum_probs=34.9
Q ss_pred cccccccCCC-CCchHHHHHHHHhhCCeEEEEcC------CcCEEEecCHHHHHHHHHH
Q 040924 19 FIGTLHQLDV-SKPHVLFWELSKKYGPLMSLRLG------FSPSLVVSSAKMAKEILKT 70 (208)
Q Consensus 19 ~~g~~~~~~~-~~~~~~~~~~~~~yG~v~~~~~~------~~~~v~i~dp~~~~~i~~~ 70 (208)
++||+..-.. .++-..+.+++.+||+|..+.+. |.-.|...+++.+...+..
T Consensus 33 fV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~ 91 (127)
T 2a3j_A 33 LITNINPEVPKEKLQALLYALASSQGDILDIVVDLSDDNSGKAYIVFATQESAQAFVEA 91 (127)
T ss_dssp EEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCCCSSCCCEEEEESSHHHHHHHHHH
T ss_pred EEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccCCCcCCEEEEEECCHHHHHHHHHH
Confidence 4577653211 12234567899999999887653 2356888899999988854
No 90
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=57.01 E-value=17 Score=22.06 Aligned_cols=49 Identities=6% Similarity=0.078 Sum_probs=35.8
Q ss_pred chHHHHHHHHhhCCeEEEEcCCc-CEEEecCHHHHHHHHH--HcCccCCCCC
Q 040924 31 PHVLFWELSKKYGPLMSLRLGFS-PSLVVSSAKMAKEILK--THDLQFCSRP 79 (208)
Q Consensus 31 ~~~~~~~~~~~yG~v~~~~~~~~-~~v~i~dp~~~~~i~~--~~~~~~~~~~ 79 (208)
-...+.+++..||.|..-|+... -.+++++|+.+++++. .+...|.-+.
T Consensus 28 Kt~DI~~lFs~fggv~I~WidDTsAlvvf~~~~~a~~al~~i~k~~~y~i~t 79 (100)
T 1whv_A 28 KTSDLYQLFSAFGNIQISWIDDTSAFVSLSQPEQVQIAVNTSKYAESYRIQT 79 (100)
T ss_dssp CHHHHHHHHTTTCSCCCEEEETTEEEEECSCHHHHHHHHHHHHHCCSSEEEE
T ss_pred hhHHHHHHhhccCCEEEEEEcCCeEEEEecCHHHHHHHHHhcccCCceEEEE
Confidence 45678899999998776676543 4688899999999997 3345554443
No 91
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=56.99 E-value=29 Score=21.15 Aligned_cols=49 Identities=14% Similarity=0.266 Sum_probs=35.4
Q ss_pred cccccccCCCCCchHHHHHHHHhhCCeEEEEcCC-------cCEEEecCHHHHHHHHHH
Q 040924 19 FIGTLHQLDVSKPHVLFWELSKKYGPLMSLRLGF-------SPSLVVSSAKMAKEILKT 70 (208)
Q Consensus 19 ~~g~~~~~~~~~~~~~~~~~~~~yG~v~~~~~~~-------~~~v~i~dp~~~~~i~~~ 70 (208)
++||+.. .--.+.+.+++.+||+|..+.+.. .-.|...+++.++..+..
T Consensus 9 fV~nLp~---~~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~ 64 (115)
T 4f25_A 9 FIKNLDK---SIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEK 64 (115)
T ss_dssp EEESCCT---TCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHH
T ss_pred EECCCCC---CCCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHH
Confidence 4566642 334578889999999988776531 236888899999998854
No 92
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=56.56 E-value=29 Score=20.69 Aligned_cols=52 Identities=13% Similarity=0.070 Sum_probs=37.8
Q ss_pred ccccccccCCCCC----chHHHHHHHHhhCCeEEEEcC-------CcCEEEecCHHHHHHHHHH
Q 040924 18 PFIGTLHQLDVSK----PHVLFWELSKKYGPLMSLRLG-------FSPSLVVSSAKMAKEILKT 70 (208)
Q Consensus 18 p~~g~~~~~~~~~----~~~~~~~~~~~yG~v~~~~~~-------~~~~v~i~dp~~~~~i~~~ 70 (208)
-++||+..- ... ....+.+++.+||+|..+.+. |.-.|...+++.+..++..
T Consensus 18 l~V~nLp~~-~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~ 80 (105)
T 2nlw_A 18 IVVDNVPQV-GPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKN 80 (105)
T ss_dssp EEEESCCCC-CTTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHH
T ss_pred EEEeCCCcc-hhhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHH
Confidence 357887653 222 457889999999999888765 3346777888888888864
No 93
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=54.77 E-value=33 Score=20.77 Aligned_cols=57 Identities=12% Similarity=0.078 Sum_probs=38.7
Q ss_pred cccccccCCCCCchHHHHHHHHhhCCeEEEEcCC---cCEEEecCHHHHHHHHHH-cCccCCCC
Q 040924 19 FIGTLHQLDVSKPHVLFWELSKKYGPLMSLRLGF---SPSLVVSSAKMAKEILKT-HDLQFCSR 78 (208)
Q Consensus 19 ~~g~~~~~~~~~~~~~~~~~~~~yG~v~~~~~~~---~~~v~i~dp~~~~~i~~~-~~~~~~~~ 78 (208)
++||+. ..-....+.+++.+||+|..+.+.. .-.|...+++.++..+.. ++..+..+
T Consensus 14 ~V~nLp---~~~te~~L~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~ 74 (111)
T 1whx_A 14 LAKNLP---AGTLAAEIQETFSRFGSLGRVLLPEGGITAIVEFLEPLEARKAFRHLAYSKFHHV 74 (111)
T ss_dssp EEESCC---TTCCHHHHHHHHHTTSCEEEEECCSSSSCEEEEESCHHHHHHHHHHHTTCBSSSS
T ss_pred EEeCCC---CCCCHHHHHHHHHhcCCEEEEEEeCCCCEEEEEeCCHHHHHHHHHHhCCCEECCe
Confidence 345543 2345677899999999998887643 346777899999988753 44444444
No 94
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=54.57 E-value=34 Score=20.85 Aligned_cols=49 Identities=12% Similarity=0.114 Sum_probs=36.2
Q ss_pred ccccccccCCCCCchHHHHHHHHhhCCeEEEEcC---CcCEEEecCHHHHHHHHH
Q 040924 18 PFIGTLHQLDVSKPHVLFWELSKKYGPLMSLRLG---FSPSLVVSSAKMAKEILK 69 (208)
Q Consensus 18 p~~g~~~~~~~~~~~~~~~~~~~~yG~v~~~~~~---~~~~v~i~dp~~~~~i~~ 69 (208)
=++||+.. .-....+.+++..||.|..+.+. +.-.|...+++.+...+.
T Consensus 19 LfV~nLp~---~vte~dL~~lF~~fG~V~~v~i~~~kGfaFVeF~~~~~A~~Ai~ 70 (105)
T 1sjq_A 19 IHIRKLPI---DVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVN 70 (105)
T ss_dssp EEECSCCT---TSCHHHHHHHHHHHCCEEEEEEETTTTEEEEEESSHHHHHHHHH
T ss_pred EEEeCCCC---CCCHHHHHHHHHhcCCEEEEEEEcCCCEEEEEECCHHHHHHHHH
Confidence 34677653 33456788999999999888754 345788889999988886
No 95
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=53.43 E-value=34 Score=20.58 Aligned_cols=49 Identities=16% Similarity=0.129 Sum_probs=35.8
Q ss_pred ccccccccCCCCCchHHHHHHHHhhCCeEEEEcC---CcCEEEecCHHHHHHHHH
Q 040924 18 PFIGTLHQLDVSKPHVLFWELSKKYGPLMSLRLG---FSPSLVVSSAKMAKEILK 69 (208)
Q Consensus 18 p~~g~~~~~~~~~~~~~~~~~~~~yG~v~~~~~~---~~~~v~i~dp~~~~~i~~ 69 (208)
=++||+.. .--...+.+++..||.|..+.+. +.-.|-..+.+.+...+.
T Consensus 18 l~V~nLp~---~~te~~L~~~F~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~ 69 (104)
T 1wex_A 18 VHVRGLCE---SVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKECVT 69 (104)
T ss_dssp EEEESCCS---SCCHHHHHHHHTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHH
T ss_pred EEEeCCCC---CCCHHHHHHHHHhCCCEEEEEEECCCCEEEEEECCHHHHHHHHH
Confidence 35677642 34467788999999999888753 235677789998888875
No 96
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=52.93 E-value=33 Score=20.28 Aligned_cols=50 Identities=14% Similarity=0.101 Sum_probs=34.1
Q ss_pred CccccccccCCCCCchHHHHHHHHhhCCeEEEEcCC---cCEEEecCHHHHHHHHH
Q 040924 17 LPFIGTLHQLDVSKPHVLFWELSKKYGPLMSLRLGF---SPSLVVSSAKMAKEILK 69 (208)
Q Consensus 17 ~p~~g~~~~~~~~~~~~~~~~~~~~yG~v~~~~~~~---~~~v~i~dp~~~~~i~~ 69 (208)
|-++||+. ..--...+++++.+||+|..+.+.. .-.|-..+++.+.....
T Consensus 9 wL~VgNL~---~~~te~~L~~lF~q~G~V~~~~l~~~kGfaFVey~~~~eA~~Ai~ 61 (89)
T 2wbr_A 9 WLLLKNLT---AQIDGPTLRTLCMQHGPLVSFHPYLNQGIALCKYTTREEANKAQM 61 (89)
T ss_dssp EEEEECCC---TTCCCHHHHHHHHHHSCEEEEEEETTTTEEEEEESSHHHHHHHHH
T ss_pred eEEEeCCC---ccCCHHHHHHHHHhhCCEEEEEEcCCCcEEEEEECCHHHHHHHHH
Confidence 34467754 2334578899999999999887532 34666778877776654
No 97
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=52.57 E-value=33 Score=20.05 Aligned_cols=56 Identities=13% Similarity=0.214 Sum_probs=38.4
Q ss_pred cccccccCCCCCchHHHHHHHHhhCCeEEEEcCC---------cCEEEecCHHHHHHHHHHcCccCCC
Q 040924 19 FIGTLHQLDVSKPHVLFWELSKKYGPLMSLRLGF---------SPSLVVSSAKMAKEILKTHDLQFCS 77 (208)
Q Consensus 19 ~~g~~~~~~~~~~~~~~~~~~~~yG~v~~~~~~~---------~~~v~i~dp~~~~~i~~~~~~~~~~ 77 (208)
++|++.. .-....+.+++.+||+|..+.+.. .-.|...+++.++.++..++..+..
T Consensus 14 ~V~nlp~---~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~~~~~~~g 78 (99)
T 2dgs_A 14 FVGGIPH---NCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMG 78 (99)
T ss_dssp EEESCCS---SCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHHHCCCBSSS
T ss_pred EEeCCCC---CCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHHhCCCEECC
Confidence 4566542 344567889999999998877632 2357778999999998754444433
No 98
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=52.35 E-value=20 Score=20.33 Aligned_cols=50 Identities=14% Similarity=0.271 Sum_probs=34.8
Q ss_pred cccccccCCCCCchHHHHHHHHhhCCeEEEEcCC---------cCEEEecCHHHHHHHHHHc
Q 040924 19 FIGTLHQLDVSKPHVLFWELSKKYGPLMSLRLGF---------SPSLVVSSAKMAKEILKTH 71 (208)
Q Consensus 19 ~~g~~~~~~~~~~~~~~~~~~~~yG~v~~~~~~~---------~~~v~i~dp~~~~~i~~~~ 71 (208)
++||+.. .-....+.+++..||+|..+.+.. .-.|...+++.++.++...
T Consensus 15 ~V~nlp~---~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~ 73 (87)
T 3s7r_A 15 FVGGLSW---DTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQK 73 (87)
T ss_dssp EEECCCT---TCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHSS
T ss_pred EEeCCCC---CCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHhC
Confidence 4566642 335677889999999988776521 2356778999999988543
No 99
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=52.28 E-value=34 Score=20.22 Aligned_cols=49 Identities=16% Similarity=0.194 Sum_probs=34.8
Q ss_pred cccccccCCCCCchHHHHHHHHhhCCeEEEEcC--------CcCEEEecCHHHHHHHHHH
Q 040924 19 FIGTLHQLDVSKPHVLFWELSKKYGPLMSLRLG--------FSPSLVVSSAKMAKEILKT 70 (208)
Q Consensus 19 ~~g~~~~~~~~~~~~~~~~~~~~yG~v~~~~~~--------~~~~v~i~dp~~~~~i~~~ 70 (208)
++||+.. .-....+.+++.+||+|..+.+. +.-.|...+++.++.++..
T Consensus 19 ~v~nLp~---~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~ 75 (105)
T 2dnh_A 19 FVGMLNK---QQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHA 75 (105)
T ss_dssp EEESCCT---TCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHH
T ss_pred EEeCCCC---CCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHH
Confidence 4566642 33456788999999998877653 2235777899999998863
No 100
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=51.81 E-value=39 Score=20.77 Aligned_cols=56 Identities=13% Similarity=0.199 Sum_probs=38.1
Q ss_pred cccccccCCCCCchHHHHHHHHhhCCeEEEEcC---------CcCEEEecCHHHHHHHHHH-cCccCCC
Q 040924 19 FIGTLHQLDVSKPHVLFWELSKKYGPLMSLRLG---------FSPSLVVSSAKMAKEILKT-HDLQFCS 77 (208)
Q Consensus 19 ~~g~~~~~~~~~~~~~~~~~~~~yG~v~~~~~~---------~~~~v~i~dp~~~~~i~~~-~~~~~~~ 77 (208)
++||+.. .-....+.+++.+||+|..+.+. +.-.|...+++.+..++.. ++..+..
T Consensus 26 ~V~nlp~---~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 91 (126)
T 3ex7_B 26 FVTGVHE---EATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMG 91 (126)
T ss_dssp EEESCCT---TCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSS
T ss_pred EEeCCCC---CCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCC
Confidence 3555542 33456788899999999888763 2346788899999999853 4444433
No 101
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=50.80 E-value=39 Score=20.37 Aligned_cols=54 Identities=7% Similarity=0.075 Sum_probs=38.4
Q ss_pred CCCCccccccccCCCCCchHHHHHHHHhhCCeEEEEcCC---cCEEEecCHHHHHHHHH
Q 040924 14 PWGLPFIGTLHQLDVSKPHVLFWELSKKYGPLMSLRLGF---SPSLVVSSAKMAKEILK 69 (208)
Q Consensus 14 p~~~p~~g~~~~~~~~~~~~~~~~~~~~yG~v~~~~~~~---~~~v~i~dp~~~~~i~~ 69 (208)
|...=++||+..- .--...+.+++..||.|..+++.. .-.|-..+++.+..++.
T Consensus 14 p~~~l~V~nLp~~--~~te~dL~~lF~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~ 70 (102)
T 1x4d_A 14 TRRVVHIMDFQRG--KNLRYQLLQLVEPFGVISNHLILNKINEAFIEMATTEDAQAAVD 70 (102)
T ss_dssp CCCEEEEESCCCS--SSHHHHHHTTTGGGSCEEEEEECSSSSCEEEEESSHHHHHHHHH
T ss_pred CCCEEEEeCCCCC--cCCHHHHHHHHHhcCCEEEEEEEcCCCEEEEEECCHHHHHHHHH
Confidence 4333457887530 334567889999999999888653 34788889999988875
No 102
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=50.46 E-value=36 Score=20.28 Aligned_cols=44 Identities=9% Similarity=0.023 Sum_probs=32.3
Q ss_pred CchHHHHHHHHhhCCeEEEEcC-CcCEEEecCHHHHHHHHHHcCc
Q 040924 30 KPHVLFWELSKKYGPLMSLRLG-FSPSLVVSSAKMAKEILKTHDL 73 (208)
Q Consensus 30 ~~~~~~~~~~~~yG~v~~~~~~-~~~~v~i~dp~~~~~i~~~~~~ 73 (208)
+....+.+.+..||.|..+++. ..-+|...|.+.+..++.-++.
T Consensus 27 ~l~~~L~~~F~~~G~Vi~vr~~~d~~fVtF~d~~sAlaAi~mnG~ 71 (91)
T 2dnr_A 27 ALIDELLQQFASFGEVILIRFVEDKMWVTFLEGSSALNVLSLNGK 71 (91)
T ss_dssp HHHHHHHHHHHTTCCEEEEEECSSSEEEEESSHHHHHHGGGGTTC
T ss_pred HHHHHHHHHHHhCCCeEEEEEecCCEEEEECChHHHHHHHhcCCe
Confidence 3456777888889999888854 4567777899998888764443
No 103
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=50.31 E-value=40 Score=20.43 Aligned_cols=49 Identities=18% Similarity=0.353 Sum_probs=35.4
Q ss_pred cccccccCCCCCchHHHHHHHHhhCCeEEEEcCC---------cCEEEecCHHHHHHHHHH
Q 040924 19 FIGTLHQLDVSKPHVLFWELSKKYGPLMSLRLGF---------SPSLVVSSAKMAKEILKT 70 (208)
Q Consensus 19 ~~g~~~~~~~~~~~~~~~~~~~~yG~v~~~~~~~---------~~~v~i~dp~~~~~i~~~ 70 (208)
++||+.. .-....+.+++.+||+|..+.+.. .-.|...+++.++..+..
T Consensus 10 fV~nL~~---~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~ 67 (110)
T 3s8s_A 10 TFARLND---NVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKN 67 (110)
T ss_dssp EEESCCT---TCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHH
T ss_pred EEECCCC---CCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHH
Confidence 4566642 345677889999999988876521 236888899999999854
No 104
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=50.15 E-value=39 Score=20.30 Aligned_cols=50 Identities=14% Similarity=0.107 Sum_probs=35.3
Q ss_pred cccccccCCCCCchHHHHHHHHhhCCeEEEEcCC---------cCEEEecCHHHHHHHHHHc
Q 040924 19 FIGTLHQLDVSKPHVLFWELSKKYGPLMSLRLGF---------SPSLVVSSAKMAKEILKTH 71 (208)
Q Consensus 19 ~~g~~~~~~~~~~~~~~~~~~~~yG~v~~~~~~~---------~~~v~i~dp~~~~~i~~~~ 71 (208)
++||+. ..-....+.+++..||+|..+.+.. .-.|...+++.++.++...
T Consensus 29 fV~nLp---~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~ 87 (109)
T 2rs2_A 29 FIGGLS---WQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS 87 (109)
T ss_dssp EEESCC---TTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS
T ss_pred EEeCCC---CCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC
Confidence 355543 2334567889999999998877532 2367788999999998643
No 105
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=50.06 E-value=29 Score=20.96 Aligned_cols=42 Identities=5% Similarity=-0.087 Sum_probs=30.5
Q ss_pred chHHHHHHHHhhCCeEEEEcC---------CcCEEEecCHHHHHHHHHHcC
Q 040924 31 PHVLFWELSKKYGPLMSLRLG---------FSPSLVVSSAKMAKEILKTHD 72 (208)
Q Consensus 31 ~~~~~~~~~~~yG~v~~~~~~---------~~~~v~i~dp~~~~~i~~~~~ 72 (208)
....+.+++..||.|..+.+. +.-.|...+++.++.++..++
T Consensus 38 t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g 88 (114)
T 2cq4_A 38 RPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIGLTG 88 (114)
T ss_dssp CHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHHHHTT
T ss_pred CHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHHHcCC
Confidence 456788999999999888764 123577788888888874343
No 106
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=49.49 E-value=40 Score=20.13 Aligned_cols=49 Identities=16% Similarity=0.180 Sum_probs=35.0
Q ss_pred cccccccCCCCCchHHHHHHHHhhCCeEEEEcC---------CcCEEEecCHHHHHHHHHH
Q 040924 19 FIGTLHQLDVSKPHVLFWELSKKYGPLMSLRLG---------FSPSLVVSSAKMAKEILKT 70 (208)
Q Consensus 19 ~~g~~~~~~~~~~~~~~~~~~~~yG~v~~~~~~---------~~~~v~i~dp~~~~~i~~~ 70 (208)
++|++.. .-....+.+++..||+|..+.+. +.-.|...+++.+..++..
T Consensus 30 ~V~nlp~---~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~ 87 (110)
T 1oo0_B 30 FVTSIHE---EAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEA 87 (110)
T ss_dssp EEESCCT---TCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHH
T ss_pred EEeCCCC---CCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHH
Confidence 3555542 33456788999999999888763 2346777899999998863
No 107
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=48.92 E-value=37 Score=19.68 Aligned_cols=49 Identities=20% Similarity=0.152 Sum_probs=34.9
Q ss_pred cccccccCCCCCchHHHHHHHHhhCCeEEEEcC------------CcCEEEecCHHHHHHHHHH
Q 040924 19 FIGTLHQLDVSKPHVLFWELSKKYGPLMSLRLG------------FSPSLVVSSAKMAKEILKT 70 (208)
Q Consensus 19 ~~g~~~~~~~~~~~~~~~~~~~~yG~v~~~~~~------------~~~~v~i~dp~~~~~i~~~ 70 (208)
++||+.. .-....+.+++.+||+|..+.+. +.-.|...+++.++.++..
T Consensus 9 ~V~nLp~---~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~ 69 (98)
T 2cpf_A 9 FIKNLNF---STTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQ 69 (98)
T ss_dssp EEESCCT---TCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHH
T ss_pred EEeCCCC---CCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHH
Confidence 4566542 34456788999999998777643 1235777899999999874
No 108
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=48.37 E-value=45 Score=20.41 Aligned_cols=49 Identities=12% Similarity=0.064 Sum_probs=35.9
Q ss_pred cccccccCCCCCchHHHHHHHHhhC-CeEEEEcC-----CcCEEEecCHHHHHHHHHH
Q 040924 19 FIGTLHQLDVSKPHVLFWELSKKYG-PLMSLRLG-----FSPSLVVSSAKMAKEILKT 70 (208)
Q Consensus 19 ~~g~~~~~~~~~~~~~~~~~~~~yG-~v~~~~~~-----~~~~v~i~dp~~~~~i~~~ 70 (208)
++||+.. .-..+.+.+++.+|| .|..+.+. |.-.|...+++.++..+..
T Consensus 32 ~VgnLp~---~~te~dL~~~F~~~G~~v~~v~i~~~~~rGfaFV~F~~~e~A~~Ai~~ 86 (111)
T 2jvr_A 32 TMKNLPE---GCSWQDLKDLARENSLETTFSSVNTRDFDGTGALEFPSEEILVEALER 86 (111)
T ss_dssp EEECSSC---CCCHHHHHHHHHHHTCCCSEEECSSCSSSCCEEEEESSHHHHHHHHHH
T ss_pred EEECCCC---CCCHHHHHHHHHHhCCeeEEEEEEcCCCCCEEEEEECCHHHHHHHHHH
Confidence 4566642 345678899999999 77777653 3457888899999998854
No 109
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=48.21 E-value=39 Score=20.39 Aligned_cols=49 Identities=14% Similarity=0.131 Sum_probs=34.0
Q ss_pred cccccccCCCCCchHHHHHHHHhhCCeEEEEcCC---------cCEEEecCHHHHHHHHHH
Q 040924 19 FIGTLHQLDVSKPHVLFWELSKKYGPLMSLRLGF---------SPSLVVSSAKMAKEILKT 70 (208)
Q Consensus 19 ~~g~~~~~~~~~~~~~~~~~~~~yG~v~~~~~~~---------~~~v~i~dp~~~~~i~~~ 70 (208)
++||+.. .-..+.+.+++.+||+|..+.+.. .-+|...+++.++.++..
T Consensus 29 ~V~nLp~---~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~ 86 (115)
T 2cpz_A 29 FIYHLPQ---EFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQS 86 (115)
T ss_dssp EEESCCS---SCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHH
T ss_pred EEeCCCC---CCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHH
Confidence 4566542 334577889999999987765421 235777899999998854
No 110
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=47.81 E-value=37 Score=19.36 Aligned_cols=49 Identities=10% Similarity=0.108 Sum_probs=34.5
Q ss_pred cccccccCCCCCchHHHHHHHHhhCCeEEEEcC-------CcCEEEecCHHHHHHHHHH
Q 040924 19 FIGTLHQLDVSKPHVLFWELSKKYGPLMSLRLG-------FSPSLVVSSAKMAKEILKT 70 (208)
Q Consensus 19 ~~g~~~~~~~~~~~~~~~~~~~~yG~v~~~~~~-------~~~~v~i~dp~~~~~i~~~ 70 (208)
++||+.. .-....+.+++.+||+|..+.+. +.-.|...+++.++.++..
T Consensus 12 ~V~nlp~---~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~ 67 (92)
T 2dgv_A 12 FVRNLPF---DFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRM 67 (92)
T ss_dssp EECSCCT---TCCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHH
T ss_pred EEeCCCC---CCCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHH
Confidence 4566542 34567788999999998877643 2235777899999998864
No 111
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=47.68 E-value=40 Score=19.70 Aligned_cols=41 Identities=12% Similarity=0.108 Sum_probs=30.9
Q ss_pred CchHHHHHHHHhhCCeEEEEcC----CcCEEEecCHHHHHHHHHH
Q 040924 30 KPHVLFWELSKKYGPLMSLRLG----FSPSLVVSSAKMAKEILKT 70 (208)
Q Consensus 30 ~~~~~~~~~~~~yG~v~~~~~~----~~~~v~i~dp~~~~~i~~~ 70 (208)
-....+.+++.+||+|..+.+. +.-.|...+++.+..++..
T Consensus 12 ~t~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~ 56 (101)
T 2hvz_A 12 AGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRG 56 (101)
T ss_dssp CSHHHHHHHHHHHCCCSEEEEESSSSSEEEEECSSHHHHHHHHHH
T ss_pred CCHHHHHHHHHhcCCeEEEEEeeCCCCEEEEEECCHHHHHHHHHH
Confidence 3456788999999998777653 3346777899999998863
No 112
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=47.63 E-value=45 Score=20.32 Aligned_cols=55 Identities=20% Similarity=0.212 Sum_probs=37.3
Q ss_pred cccccccCCCCCchHHHHHHHHhhCCeEEEEcC--------CcCEEEecCHHHHHHHHHH-cCccCC
Q 040924 19 FIGTLHQLDVSKPHVLFWELSKKYGPLMSLRLG--------FSPSLVVSSAKMAKEILKT-HDLQFC 76 (208)
Q Consensus 19 ~~g~~~~~~~~~~~~~~~~~~~~yG~v~~~~~~--------~~~~v~i~dp~~~~~i~~~-~~~~~~ 76 (208)
++|++.. .-....+.+++.+||+|..+.+. +.-.|...+++.++.++.. ++..+.
T Consensus 11 ~V~nLp~---~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~ 74 (116)
T 2fy1_A 11 FIGGLNR---ETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLH 74 (116)
T ss_dssp EEECCTT---TCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCS
T ss_pred EEeCCCC---CCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 4566542 34456788999999998777653 2346777899999999864 333343
No 113
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=47.61 E-value=32 Score=21.14 Aligned_cols=39 Identities=3% Similarity=-0.058 Sum_probs=29.7
Q ss_pred chHHHHHHHHhhCCeEEEEcCC---------cCEEEecCHHHHHHHHH
Q 040924 31 PHVLFWELSKKYGPLMSLRLGF---------SPSLVVSSAKMAKEILK 69 (208)
Q Consensus 31 ~~~~~~~~~~~yG~v~~~~~~~---------~~~v~i~dp~~~~~i~~ 69 (208)
....+.+++.+||+|..+.+.. .-.|...+.+.++.++.
T Consensus 49 t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~ 96 (124)
T 2jwn_A 49 TAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAVA 96 (124)
T ss_dssp CHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHHT
T ss_pred CHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHHh
Confidence 4577889999999987776521 23577889999999983
No 114
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=47.61 E-value=60 Score=21.65 Aligned_cols=48 Identities=13% Similarity=0.171 Sum_probs=34.2
Q ss_pred ccccccCCCCCchHHHHHHHHhhCCeEEEEcC-----CcCEEEecCHHHHHHHHHH
Q 040924 20 IGTLHQLDVSKPHVLFWELSKKYGPLMSLRLG-----FSPSLVVSSAKMAKEILKT 70 (208)
Q Consensus 20 ~g~~~~~~~~~~~~~~~~~~~~yG~v~~~~~~-----~~~~v~i~dp~~~~~i~~~ 70 (208)
+||+. ..--.+.+.+++.+||.|-++++. +.-.|...|++.+......
T Consensus 51 VgNL~---~~vted~L~~~Fs~fG~V~~V~i~~k~~rgfAFVeF~d~~~A~~Ai~~ 103 (164)
T 1sjr_A 51 VENLF---YPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLS 103 (164)
T ss_dssp ECSCC---SCCCHHHHHHHHHHHSCEEEEEEEESSSCEEEEEEESCHHHHHHHHHH
T ss_pred EeCcC---CCCCHHHHHHHHHhcCCEEEEEEEeCCCCCEEEEEECCHHHHHHHHHH
Confidence 56653 233456788999999998887753 2346777899988888764
No 115
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=47.53 E-value=36 Score=19.23 Aligned_cols=42 Identities=7% Similarity=-0.020 Sum_probs=30.1
Q ss_pred chHHHHHHHHhhCCeEEEEcCC---------cCEEEecCHHHHHHHHHHcC
Q 040924 31 PHVLFWELSKKYGPLMSLRLGF---------SPSLVVSSAKMAKEILKTHD 72 (208)
Q Consensus 31 ~~~~~~~~~~~yG~v~~~~~~~---------~~~v~i~dp~~~~~i~~~~~ 72 (208)
....+.+++..||+|..+.+.. .-.|...+++.++.++..++
T Consensus 19 t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~g 69 (89)
T 3ucg_A 19 TAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDE 69 (89)
T ss_dssp CHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHGGGTT
T ss_pred CHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHhcCC
Confidence 4567889999999988775421 23577789999888884333
No 116
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=47.35 E-value=49 Score=20.61 Aligned_cols=49 Identities=12% Similarity=0.114 Sum_probs=35.4
Q ss_pred ccccccccCCCCCchHHHHHHHHhhCCeEEEEcC---CcCEEEecCHHHHHHHHH
Q 040924 18 PFIGTLHQLDVSKPHVLFWELSKKYGPLMSLRLG---FSPSLVVSSAKMAKEILK 69 (208)
Q Consensus 18 p~~g~~~~~~~~~~~~~~~~~~~~yG~v~~~~~~---~~~~v~i~dp~~~~~i~~ 69 (208)
-++||+.. .--...+.+++..||.|..+.+. +.-.|...+.+.+..++.
T Consensus 34 LfVgNLp~---~vte~dL~~lF~~fG~V~~v~i~~~kG~AFVeF~~~e~A~~Ai~ 85 (119)
T 2ad9_A 34 IHIRKLPI---DVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVN 85 (119)
T ss_dssp EEEESCCT---TCCHHHHHHHHTTTSCCCEEEEEGGGTEEEEECSCHHHHHHHHH
T ss_pred EEEeCCCC---CCCHHHHHHHHHhcCCEEEEEEeCCCCEEEEEECCHHHHHHHHH
Confidence 35677653 33456788999999998877654 345677789988888875
No 117
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=47.23 E-value=55 Score=21.39 Aligned_cols=49 Identities=16% Similarity=0.180 Sum_probs=34.5
Q ss_pred cccccccCCCCCchHHHHHHHHhhCCeEEEEcC---------CcCEEEecCHHHHHHHHHH
Q 040924 19 FIGTLHQLDVSKPHVLFWELSKKYGPLMSLRLG---------FSPSLVVSSAKMAKEILKT 70 (208)
Q Consensus 19 ~~g~~~~~~~~~~~~~~~~~~~~yG~v~~~~~~---------~~~~v~i~dp~~~~~i~~~ 70 (208)
++||+.. .-....+.+++.+||+|..+.+. +.-+|...+++.+..++..
T Consensus 76 ~V~nLp~---~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~ 133 (165)
T 1rk8_A 76 FVTSIHE---EAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEA 133 (165)
T ss_dssp EEESCCT---TCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHH
T ss_pred EEeCCCC---CCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHH
Confidence 3555542 34567788999999998877653 2346777899999988863
No 118
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=46.33 E-value=46 Score=19.94 Aligned_cols=40 Identities=20% Similarity=0.343 Sum_probs=32.0
Q ss_pred chHHHHHHHHhhCCeEEEEcCC----cCEEEecCHHHHHHHHHH
Q 040924 31 PHVLFWELSKKYGPLMSLRLGF----SPSLVVSSAKMAKEILKT 70 (208)
Q Consensus 31 ~~~~~~~~~~~yG~v~~~~~~~----~~~v~i~dp~~~~~i~~~ 70 (208)
....+.+++.+||.|..+.+.+ .-+|...+++.+...+..
T Consensus 30 te~~L~~~F~~~G~V~~v~i~~~~rGfaFVeF~~~~~A~~Ai~~ 73 (100)
T 2d9o_A 30 SKDVLLRLLQKYGEVLNLVLSSKKPGTAVVEFATVKAAELAVQN 73 (100)
T ss_dssp CHHHHHHHHHTTSCEEEEEEESSSSSEEEEEESCHHHHHHHHHT
T ss_pred CHHHHHHHHHhcCCEEEEEEccCCCCEEEEEECCHHHHHHHHHh
Confidence 3678899999999998887642 346778899999999865
No 119
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=46.11 E-value=42 Score=19.49 Aligned_cols=40 Identities=10% Similarity=0.178 Sum_probs=31.2
Q ss_pred chHHHHHHHHhhCCeEEEEcC---CcCEEEecCHHHHHHHHHH
Q 040924 31 PHVLFWELSKKYGPLMSLRLG---FSPSLVVSSAKMAKEILKT 70 (208)
Q Consensus 31 ~~~~~~~~~~~yG~v~~~~~~---~~~~v~i~dp~~~~~i~~~ 70 (208)
....+.+++.+||+|..+.++ +.-.|...+++.+...+..
T Consensus 26 t~~~l~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~a~~Ai~~ 68 (97)
T 1x5p_A 26 TPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKMESADQAVAE 68 (97)
T ss_dssp CHHHHHHHHTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHHH
T ss_pred CHHHHHHHHhhCCCEEEEEecCCCCEEEEEECCHHHHHHHHHH
Confidence 456788999999999888764 2346777899999998854
No 120
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=46.04 E-value=44 Score=19.71 Aligned_cols=49 Identities=16% Similarity=0.180 Sum_probs=35.7
Q ss_pred cccccccCCCCCchHHHHHHHHhhCCeEEEEcCCc----------CEEEecCHHHHHHHHHH
Q 040924 19 FIGTLHQLDVSKPHVLFWELSKKYGPLMSLRLGFS----------PSLVVSSAKMAKEILKT 70 (208)
Q Consensus 19 ~~g~~~~~~~~~~~~~~~~~~~~yG~v~~~~~~~~----------~~v~i~dp~~~~~i~~~ 70 (208)
++||+.. .-....+.+++..||+|..+.+... -.|...+++.+..++..
T Consensus 19 ~V~nlp~---~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~ 77 (107)
T 2cph_A 19 LVRNIPF---QANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNA 77 (107)
T ss_dssp EEESCCT---TCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHH
T ss_pred EEeCCCC---cCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHH
Confidence 4566542 3345678899999999988876432 35777899999998864
No 121
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=45.97 E-value=44 Score=19.70 Aligned_cols=49 Identities=14% Similarity=0.213 Sum_probs=34.2
Q ss_pred cccccccCCCCCchHHHHHHHHhhCCeEEEEcC---------CcCEEEecCHHHHHHHHHH
Q 040924 19 FIGTLHQLDVSKPHVLFWELSKKYGPLMSLRLG---------FSPSLVVSSAKMAKEILKT 70 (208)
Q Consensus 19 ~~g~~~~~~~~~~~~~~~~~~~~yG~v~~~~~~---------~~~~v~i~dp~~~~~i~~~ 70 (208)
++||+.. .-....+.+++..||+|..+.+. +.-.|...+++.+..++..
T Consensus 27 ~V~nlp~---~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~ 84 (106)
T 1p27_B 27 FVTGVHE---EATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEG 84 (106)
T ss_dssp EEECCCT---TCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHH
T ss_pred EEeCCCC---CCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHH
Confidence 3455542 33456788999999998877652 1235777899999998864
No 122
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=45.62 E-value=32 Score=19.58 Aligned_cols=46 Identities=15% Similarity=0.284 Sum_probs=32.8
Q ss_pred cccccccCCCCCchHHHHHHHHhhCCeEEEEcC----CcCEEEecCHHHHHHH
Q 040924 19 FIGTLHQLDVSKPHVLFWELSKKYGPLMSLRLG----FSPSLVVSSAKMAKEI 67 (208)
Q Consensus 19 ~~g~~~~~~~~~~~~~~~~~~~~yG~v~~~~~~----~~~~v~i~dp~~~~~i 67 (208)
++||+.. .-....+.+++.+||+|..+.+. +.-.|...+++.++.+
T Consensus 9 ~V~nLp~---~~te~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~~ 58 (88)
T 1wf0_A 9 FVGRCTG---DMTEDELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQIAQSL 58 (88)
T ss_dssp EEESCCS---SSCHHHHHHHSTTTSCCCEEECCSSCCSCCEEECSCHHHHHHT
T ss_pred EEeCCCC---CCCHHHHHHHHHHcCCeeEEEEecCCCCEEEEEECCHHHHHHH
Confidence 3566542 33456788899999999888764 3456778899988764
No 123
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=45.47 E-value=48 Score=19.93 Aligned_cols=47 Identities=15% Similarity=0.142 Sum_probs=32.4
Q ss_pred hHHHHHHHHhhCCeEEEEcCC-----------cCEEEecCHHHHHHHHHH-cCccCCCC
Q 040924 32 HVLFWELSKKYGPLMSLRLGF-----------SPSLVVSSAKMAKEILKT-HDLQFCSR 78 (208)
Q Consensus 32 ~~~~~~~~~~yG~v~~~~~~~-----------~~~v~i~dp~~~~~i~~~-~~~~~~~~ 78 (208)
...+.+.+.+||+|..+.+.. .-.|...+++.+...+.. ++..|..|
T Consensus 29 ~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~f~GR 87 (105)
T 3v4m_A 29 VEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRKFANR 87 (105)
T ss_dssp HHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred HHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCEeCCC
Confidence 357888888999999887642 225777899888888753 44444433
No 124
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=45.14 E-value=44 Score=19.41 Aligned_cols=49 Identities=12% Similarity=0.103 Sum_probs=34.3
Q ss_pred cccccccCCCCCchHHHHHHHHhhCCeE-EEEcCC---------cCEEEecCHHHHHHHHHH
Q 040924 19 FIGTLHQLDVSKPHVLFWELSKKYGPLM-SLRLGF---------SPSLVVSSAKMAKEILKT 70 (208)
Q Consensus 19 ~~g~~~~~~~~~~~~~~~~~~~~yG~v~-~~~~~~---------~~~v~i~dp~~~~~i~~~ 70 (208)
++|++.. .-....+.+++.+||+|. .+.+.. .-.|...+++.++.++..
T Consensus 13 ~V~nLp~---~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~ 71 (99)
T 2div_A 13 WMGDLEP---YMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHK 71 (99)
T ss_dssp EECSCCT---TCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHT
T ss_pred EEeCCCC---CCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHH
Confidence 4566542 344577889999999987 665421 235777899999999863
No 125
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=44.95 E-value=46 Score=19.54 Aligned_cols=48 Identities=21% Similarity=0.254 Sum_probs=34.6
Q ss_pred cccccccCCCCCchHHHHHHHHhhCCeEEEEcCC-------cCEEEecCHHHHHHHHH
Q 040924 19 FIGTLHQLDVSKPHVLFWELSKKYGPLMSLRLGF-------SPSLVVSSAKMAKEILK 69 (208)
Q Consensus 19 ~~g~~~~~~~~~~~~~~~~~~~~yG~v~~~~~~~-------~~~v~i~dp~~~~~i~~ 69 (208)
++|++.. .-....+.+++..||+|..+.+.. .-.|...+++.+..++.
T Consensus 19 ~V~nlp~---~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~ 73 (103)
T 2cqi_A 19 YVGNLSR---DVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALA 73 (103)
T ss_dssp EEESCCT---TCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHH
T ss_pred EEeCCCc---cCCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHH
Confidence 4566542 334577889999999988776532 34677789999999886
No 126
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=44.77 E-value=34 Score=23.32 Aligned_cols=43 Identities=19% Similarity=0.142 Sum_probs=32.3
Q ss_pred CCchHHHHHHHHhhCCeEEEEcC--------CcCEEEecCHHHHHHHHHHc
Q 040924 29 SKPHVLFWELSKKYGPLMSLRLG--------FSPSLVVSSAKMAKEILKTH 71 (208)
Q Consensus 29 ~~~~~~~~~~~~~yG~v~~~~~~--------~~~~v~i~dp~~~~~i~~~~ 71 (208)
......+.+++..||+|..+.+. |.-.|...+++.++.++...
T Consensus 120 ~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~ 170 (193)
T 2voo_A 120 DATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETP 170 (193)
T ss_dssp TCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCT
T ss_pred cCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhC
Confidence 34567889999999998877643 23467778999999998543
No 127
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=44.17 E-value=41 Score=18.82 Aligned_cols=48 Identities=17% Similarity=0.227 Sum_probs=33.4
Q ss_pred cccccccCCCCCchHHHHHHHHhhCCeEEEEcCC---------cCEEEecCHHHHHHHHH
Q 040924 19 FIGTLHQLDVSKPHVLFWELSKKYGPLMSLRLGF---------SPSLVVSSAKMAKEILK 69 (208)
Q Consensus 19 ~~g~~~~~~~~~~~~~~~~~~~~yG~v~~~~~~~---------~~~v~i~dp~~~~~i~~ 69 (208)
++||+.. .-....+.+++.+||+|..+.+.. .-.|...+++.++.++.
T Consensus 9 ~v~nlp~---~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~ 65 (85)
T 1x4e_A 9 YIRGLQP---GTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVT 65 (85)
T ss_dssp EEESCCT---TCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHH
T ss_pred EEeCCCC---CCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH
Confidence 4566542 334567788888999988876422 23577789999888875
No 128
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=43.47 E-value=40 Score=19.75 Aligned_cols=50 Identities=10% Similarity=0.193 Sum_probs=34.9
Q ss_pred ccccccccCCCCCchHHHHHHHHhhCCeEEEEcCC---------cCEEEecCHHHHHHHHHH
Q 040924 18 PFIGTLHQLDVSKPHVLFWELSKKYGPLMSLRLGF---------SPSLVVSSAKMAKEILKT 70 (208)
Q Consensus 18 p~~g~~~~~~~~~~~~~~~~~~~~yG~v~~~~~~~---------~~~v~i~dp~~~~~i~~~ 70 (208)
=++||+.. .-....+.+++.+||+|..+.+.. .-.|...+++.+..++..
T Consensus 15 l~V~nLp~---~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~ 73 (102)
T 2cqb_A 15 LYVGGLAE---EVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDN 73 (102)
T ss_dssp EEEESCCS---SCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHH
T ss_pred EEEeCCCC---CCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHH
Confidence 34667643 334677889999999988777632 235666799999998853
No 129
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=43.42 E-value=49 Score=19.46 Aligned_cols=49 Identities=10% Similarity=0.112 Sum_probs=35.6
Q ss_pred cccccccCCCCCchHHHHHHHHhhCCeEEEEcC-CcCEEEecCHHHHHHHHHH
Q 040924 19 FIGTLHQLDVSKPHVLFWELSKKYGPLMSLRLG-FSPSLVVSSAKMAKEILKT 70 (208)
Q Consensus 19 ~~g~~~~~~~~~~~~~~~~~~~~yG~v~~~~~~-~~~~v~i~dp~~~~~i~~~ 70 (208)
++||+.. .-....+.+++.+||+|..+.+. +.-.|...+++.++.++..
T Consensus 15 ~V~nl~~---~~t~~~l~~~F~~~G~i~~v~~~~~~afV~f~~~~~a~~A~~~ 64 (103)
T 2dgu_A 15 FVRNLAN---TVTEEILEKAFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEE 64 (103)
T ss_dssp EEECCCT---TCCHHHHHHHHHHHSCEEEEEECSSCEEEEESSHHHHHHHHHH
T ss_pred EEeCCCC---CCCHHHHHHHHHhcCCEEEEEEECCEEEEEeCCHHHHHHHHHH
Confidence 4566542 33456788999999999888754 3456777899999998864
No 130
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=43.27 E-value=53 Score=19.76 Aligned_cols=49 Identities=12% Similarity=0.070 Sum_probs=34.7
Q ss_pred cccccccCCCCCchHHHHHHHHhhCCeEEEEcCC---------cCEEEecCHHHHHHHHHH
Q 040924 19 FIGTLHQLDVSKPHVLFWELSKKYGPLMSLRLGF---------SPSLVVSSAKMAKEILKT 70 (208)
Q Consensus 19 ~~g~~~~~~~~~~~~~~~~~~~~yG~v~~~~~~~---------~~~v~i~dp~~~~~i~~~ 70 (208)
++|++.. .-....+.+++.+||.|..+.+.. .-.|...+++.++.++..
T Consensus 19 ~V~nlp~---~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~ 76 (115)
T 2dgo_A 19 FVGDLSP---EITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQ 76 (115)
T ss_dssp EEESCCT---TCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHH
T ss_pred EEeCCCC---CCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHH
Confidence 4566542 334567889999999988776532 235777899999999864
No 131
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=43.23 E-value=48 Score=19.35 Aligned_cols=49 Identities=16% Similarity=0.191 Sum_probs=34.7
Q ss_pred cccccccCCCCCchHHHHHHHHhhCCeEEEEcCC---------cCEEEecCHHHHHHHHHH
Q 040924 19 FIGTLHQLDVSKPHVLFWELSKKYGPLMSLRLGF---------SPSLVVSSAKMAKEILKT 70 (208)
Q Consensus 19 ~~g~~~~~~~~~~~~~~~~~~~~yG~v~~~~~~~---------~~~v~i~dp~~~~~i~~~ 70 (208)
+++++.. .-....+.+++..||+|..+.+.. .-.|...+++.+..++..
T Consensus 16 ~v~nLp~---~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~ 73 (102)
T 1x5s_A 16 FVGGLSF---DTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 73 (102)
T ss_dssp EEESCCT---TCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHH
T ss_pred EEECCCC---CCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHH
Confidence 4566542 344567888999999988777643 235677899999998853
No 132
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=43.15 E-value=51 Score=20.30 Aligned_cols=46 Identities=15% Similarity=0.084 Sum_probs=31.1
Q ss_pred hHHHHHHHHhhCCeEEEEcC-----CcCEEEecCHHHHHHHHHH-cCccCCC
Q 040924 32 HVLFWELSKKYGPLMSLRLG-----FSPSLVVSSAKMAKEILKT-HDLQFCS 77 (208)
Q Consensus 32 ~~~~~~~~~~yG~v~~~~~~-----~~~~v~i~dp~~~~~i~~~-~~~~~~~ 77 (208)
.+.+.+.+.+||.|..+.+. |.-.|...+++.+...+.. ++..|.+
T Consensus 31 ~edl~~~f~kfG~V~~v~i~~~~~~G~~fV~f~~~e~A~~Ai~~lnG~~f~G 82 (114)
T 3s6e_A 31 KDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFAG 82 (114)
T ss_dssp HHHHHHHHTTTTCCSEEEECTTCTTCCEEEECSSHHHHHHHHHHHTTCEETT
T ss_pred HHHHHHHHhccCCEEEEEEecCCCcEEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 35667788899998888753 3345667788888887753 4444433
No 133
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=43.00 E-value=46 Score=19.05 Aligned_cols=50 Identities=18% Similarity=0.099 Sum_probs=34.9
Q ss_pred ccccccccCCCCCchHHHHHHHHhhCCeEEEEcC------C---cCEEEecCHHHHHHHHHH
Q 040924 18 PFIGTLHQLDVSKPHVLFWELSKKYGPLMSLRLG------F---SPSLVVSSAKMAKEILKT 70 (208)
Q Consensus 18 p~~g~~~~~~~~~~~~~~~~~~~~yG~v~~~~~~------~---~~~v~i~dp~~~~~i~~~ 70 (208)
=+++++.. .-....+.+++.+||+|..+.+. . .-.|...+++.++.++..
T Consensus 18 l~v~nlp~---~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~ 76 (95)
T 2cqc_A 18 LGVFGLSL---YTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKER 76 (95)
T ss_dssp EEEESCCS---SCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHH
T ss_pred EEEECCCC---CCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHH
Confidence 34566542 33456788999999998877652 1 235777899999999864
No 134
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=42.91 E-value=48 Score=19.17 Aligned_cols=49 Identities=10% Similarity=0.292 Sum_probs=34.4
Q ss_pred cccccccCCCCCchHHHHHHHHhhCCeEEEEcC---------CcCEEEecCHHHHHHHHHH
Q 040924 19 FIGTLHQLDVSKPHVLFWELSKKYGPLMSLRLG---------FSPSLVVSSAKMAKEILKT 70 (208)
Q Consensus 19 ~~g~~~~~~~~~~~~~~~~~~~~yG~v~~~~~~---------~~~~v~i~dp~~~~~i~~~ 70 (208)
++|++.. .-....+.+++.+||+|..+.+. +.-.|...+++.+..++..
T Consensus 6 ~V~nLp~---~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~ 63 (96)
T 2x1f_A 6 YLGSIPY---DQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRN 63 (96)
T ss_dssp EEESCCT---TCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHH
T ss_pred EEECCCC---CCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHH
Confidence 3455432 33456788999999999888763 2235777899999998853
No 135
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=42.57 E-value=49 Score=19.20 Aligned_cols=49 Identities=18% Similarity=0.206 Sum_probs=34.9
Q ss_pred cccccccCCCCCchHHHHHHHHhhCCeEEEEcCC---------cCEEEecCHHHHHHHHHH
Q 040924 19 FIGTLHQLDVSKPHVLFWELSKKYGPLMSLRLGF---------SPSLVVSSAKMAKEILKT 70 (208)
Q Consensus 19 ~~g~~~~~~~~~~~~~~~~~~~~yG~v~~~~~~~---------~~~v~i~dp~~~~~i~~~ 70 (208)
+++|+.. .-....+.+++..||+|..+.+.. .-.|...+++.++.++..
T Consensus 12 ~V~nlp~---~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~ 69 (99)
T 1whw_A 12 FVRNLSY---TSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAE 69 (99)
T ss_dssp EEECCCT---TCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHH
T ss_pred EEeCCCC---CCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHH
Confidence 3555542 334567889999999998887632 235777899999999853
No 136
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=41.42 E-value=54 Score=19.35 Aligned_cols=49 Identities=14% Similarity=0.140 Sum_probs=33.6
Q ss_pred cccccccCCCCCchHHHHHHHHhhCCeEEEEcC--------CcCEEEecCHHHHHHHHHH
Q 040924 19 FIGTLHQLDVSKPHVLFWELSKKYGPLMSLRLG--------FSPSLVVSSAKMAKEILKT 70 (208)
Q Consensus 19 ~~g~~~~~~~~~~~~~~~~~~~~yG~v~~~~~~--------~~~~v~i~dp~~~~~i~~~ 70 (208)
+++|+.. .-....+.+++..||+|..+.+. +.-.|...+++.++.++..
T Consensus 33 ~V~nlp~---~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~ 89 (107)
T 3ulh_A 33 LVSNLDF---GVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQ 89 (107)
T ss_dssp EEESCCT---TCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHH
T ss_pred EEeCCCC---CCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHH
Confidence 3455432 33456788899999998776543 1236777899999998864
No 137
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=41.40 E-value=35 Score=18.63 Aligned_cols=42 Identities=7% Similarity=-0.017 Sum_probs=28.4
Q ss_pred chHHHHHHHHhhCCeEEEEcCC---------cCEEEecCHHHHHHHHHHcC
Q 040924 31 PHVLFWELSKKYGPLMSLRLGF---------SPSLVVSSAKMAKEILKTHD 72 (208)
Q Consensus 31 ~~~~~~~~~~~yG~v~~~~~~~---------~~~v~i~dp~~~~~i~~~~~ 72 (208)
....+.+++.+||+|..+.+.. .-.|...+++.+..++....
T Consensus 13 t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~ 63 (77)
T 1uaw_A 13 TQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR 63 (77)
T ss_dssp CSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT
T ss_pred CHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC
Confidence 4456788889999877665422 22455678888888886433
No 138
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=41.20 E-value=53 Score=19.22 Aligned_cols=49 Identities=16% Similarity=0.233 Sum_probs=33.7
Q ss_pred cccccccCCCCCchHHHHHHHHhhCCeEEEEcC---------CcCEEEecCHHHHHHHHHH
Q 040924 19 FIGTLHQLDVSKPHVLFWELSKKYGPLMSLRLG---------FSPSLVVSSAKMAKEILKT 70 (208)
Q Consensus 19 ~~g~~~~~~~~~~~~~~~~~~~~yG~v~~~~~~---------~~~~v~i~dp~~~~~i~~~ 70 (208)
++||+. ..-....+.+++.+||+|..+.+. +.-.|...+++.+..++..
T Consensus 12 ~V~nlp---~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~ 69 (104)
T 1p1t_A 12 FVGNIP---YEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 69 (104)
T ss_dssp EEESCC---TTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHH
T ss_pred EEeCCC---CcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHH
Confidence 355554 233456788999999998776543 2235777899999999864
No 139
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=40.99 E-value=50 Score=18.91 Aligned_cols=48 Identities=17% Similarity=0.270 Sum_probs=33.9
Q ss_pred cccccccCCCCCchHHHHHHHHhhCCeEEEEcCC--------cCEEEecCHHHHHHHHH
Q 040924 19 FIGTLHQLDVSKPHVLFWELSKKYGPLMSLRLGF--------SPSLVVSSAKMAKEILK 69 (208)
Q Consensus 19 ~~g~~~~~~~~~~~~~~~~~~~~yG~v~~~~~~~--------~~~v~i~dp~~~~~i~~ 69 (208)
+++|+.. .-....+.+++..||+|..+.+.. .-.|...+++.++.++.
T Consensus 20 ~v~nlp~---~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~ 75 (95)
T 2ywk_A 20 FVGNLEA---RVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIA 75 (95)
T ss_dssp EEECCCT---TCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHH
T ss_pred EEECCCC---CCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHH
Confidence 3555542 334567889999999988776532 23577789999999886
No 140
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=40.94 E-value=65 Score=20.15 Aligned_cols=40 Identities=20% Similarity=0.322 Sum_probs=30.4
Q ss_pred chHHHHHHHHhhCCeEEEEcCC---------cCEEEecCHHHHHHHHHH
Q 040924 31 PHVLFWELSKKYGPLMSLRLGF---------SPSLVVSSAKMAKEILKT 70 (208)
Q Consensus 31 ~~~~~~~~~~~yG~v~~~~~~~---------~~~v~i~dp~~~~~i~~~ 70 (208)
....+.+++.+||+|..+.+.. .-.|...+++.+..++..
T Consensus 55 ~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~ 103 (139)
T 1u6f_A 55 DEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAG 103 (139)
T ss_dssp CHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHH
Confidence 4567889999999988776521 235777899999999864
No 141
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=40.66 E-value=56 Score=19.33 Aligned_cols=56 Identities=13% Similarity=0.043 Sum_probs=37.3
Q ss_pred cccccccCCCCCchHHHHHHHHhhCCeEE-EEcC--------CcCEEEecCHHHHHHHHHHcCccCCC
Q 040924 19 FIGTLHQLDVSKPHVLFWELSKKYGPLMS-LRLG--------FSPSLVVSSAKMAKEILKTHDLQFCS 77 (208)
Q Consensus 19 ~~g~~~~~~~~~~~~~~~~~~~~yG~v~~-~~~~--------~~~~v~i~dp~~~~~i~~~~~~~~~~ 77 (208)
++|++.. .-....+.+++..||.|.. +.+. +.-.|...+++.++..+..++..+..
T Consensus 19 ~V~nLp~---~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~~~~~~~g 83 (104)
T 1wg5_A 19 RLRGLPF---GCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGH 83 (104)
T ss_dssp EEESCCT---TCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTTTTCCSSS
T ss_pred EEeCCCC---CCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHhCcchhCC
Confidence 4566542 3456778899999998754 4432 23468889999999999764434433
No 142
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=40.33 E-value=52 Score=18.85 Aligned_cols=56 Identities=14% Similarity=0.307 Sum_probs=37.8
Q ss_pred cccccccCCCCCchHHHHHHHHhhCCeEEEEcCC---------cCEEEecCHHHHHHHHHH-cCccCCC
Q 040924 19 FIGTLHQLDVSKPHVLFWELSKKYGPLMSLRLGF---------SPSLVVSSAKMAKEILKT-HDLQFCS 77 (208)
Q Consensus 19 ~~g~~~~~~~~~~~~~~~~~~~~yG~v~~~~~~~---------~~~v~i~dp~~~~~i~~~-~~~~~~~ 77 (208)
+++|+.. .-....+.+++.+||+|..+.+.. .-.|...+++.++.++.. ++..+..
T Consensus 9 ~v~nlp~---~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 74 (95)
T 2dnz_A 9 YVGSLHF---NITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAG 74 (95)
T ss_dssp EEESCCT---TCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSS
T ss_pred EEeCCCC---CCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCC
Confidence 4566542 344567889999999988776532 235777899999999863 4434433
No 143
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=40.26 E-value=52 Score=18.81 Aligned_cols=49 Identities=14% Similarity=0.223 Sum_probs=35.3
Q ss_pred cccccccCCCCCchHHHHHHHHhhCCeEEEEcCC-cCEEEecCHHHHHHHHHH
Q 040924 19 FIGTLHQLDVSKPHVLFWELSKKYGPLMSLRLGF-SPSLVVSSAKMAKEILKT 70 (208)
Q Consensus 19 ~~g~~~~~~~~~~~~~~~~~~~~yG~v~~~~~~~-~~~v~i~dp~~~~~i~~~ 70 (208)
++||+.. .-....+.+++.+||+|..+.+.. .-.|...+++.+..++..
T Consensus 14 ~V~nLp~---~~t~~~l~~~F~~~G~v~~v~~~~~~afV~f~~~~~a~~A~~~ 63 (92)
T 2dgt_A 14 HVGNISP---TCTNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRG 63 (92)
T ss_dssp EEESCCS---SCCHHHHHHHHHTTSCCCEEEECSSEEEEEESCHHHHHHHHHH
T ss_pred EEeCCCC---CCCHHHHHHHHHhcCCeEEEEEECCEEEEEECCHHHHHHHHHH
Confidence 4566642 345677889999999988887543 345667899999988853
No 144
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=40.17 E-value=35 Score=20.08 Aligned_cols=49 Identities=12% Similarity=0.133 Sum_probs=34.3
Q ss_pred cccccccCCCCCchHHHHHHHHhhCCeEEEEcCC---------cCEEEecCHHHHHHHHHH
Q 040924 19 FIGTLHQLDVSKPHVLFWELSKKYGPLMSLRLGF---------SPSLVVSSAKMAKEILKT 70 (208)
Q Consensus 19 ~~g~~~~~~~~~~~~~~~~~~~~yG~v~~~~~~~---------~~~v~i~dp~~~~~i~~~ 70 (208)
++||+.. .-....+.+++.+||+|..+.+.. .-.|...+++.+..++..
T Consensus 19 ~V~nlp~---~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~ 76 (103)
T 2cq0_A 19 RVTNLSE---DTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAG 76 (103)
T ss_dssp EEESCCT---TCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHH
T ss_pred EEeCCCC---CCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHH
Confidence 4566542 334567788889999988776532 235777899999999864
No 145
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=39.84 E-value=41 Score=20.20 Aligned_cols=41 Identities=5% Similarity=0.007 Sum_probs=30.0
Q ss_pred CchHHHHHHHHhhCCeEEEEcC-------CcCEEEecCHHHHHHHHHH
Q 040924 30 KPHVLFWELSKKYGPLMSLRLG-------FSPSLVVSSAKMAKEILKT 70 (208)
Q Consensus 30 ~~~~~~~~~~~~yG~v~~~~~~-------~~~~v~i~dp~~~~~i~~~ 70 (208)
-..+.+.+++.+||+|..+.+. +.-.|...+++.++.++..
T Consensus 41 ~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~ 88 (109)
T 2err_A 41 FRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREK 88 (109)
T ss_dssp CCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHH
T ss_pred CCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHH
Confidence 3456788999999998777653 2345677888888888753
No 146
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=39.59 E-value=59 Score=19.32 Aligned_cols=49 Identities=14% Similarity=0.208 Sum_probs=35.1
Q ss_pred cccccccCCCCCchHHHHHHHHhhCCeEEEEcC---CcCEEEecCHHHHHHHHHH
Q 040924 19 FIGTLHQLDVSKPHVLFWELSKKYGPLMSLRLG---FSPSLVVSSAKMAKEILKT 70 (208)
Q Consensus 19 ~~g~~~~~~~~~~~~~~~~~~~~yG~v~~~~~~---~~~~v~i~dp~~~~~i~~~ 70 (208)
++|++.. .-....+.+++..||+|..+.+. +.-.|...+++.+..++..
T Consensus 29 ~V~nl~~---~~t~~~l~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~a~~A~~~ 80 (109)
T 1x4g_A 29 YCGGIAS---GLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVS 80 (109)
T ss_dssp EEECCSS---CCCHHHHHHHHHHHSCEEEEEEETTTTEEEEEESSHHHHHHHHHH
T ss_pred EEeCCCC---CCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEECCHHHHHHHHHH
Confidence 3466542 33456788899999998888753 3456777899999988854
No 147
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=39.11 E-value=64 Score=25.31 Aligned_cols=49 Identities=10% Similarity=0.156 Sum_probs=34.7
Q ss_pred cccccccCCCCCchHHHHHHHHhhCCeEEEEcC---------CcCEEEecCHHHHHHHHHH
Q 040924 19 FIGTLHQLDVSKPHVLFWELSKKYGPLMSLRLG---------FSPSLVVSSAKMAKEILKT 70 (208)
Q Consensus 19 ~~g~~~~~~~~~~~~~~~~~~~~yG~v~~~~~~---------~~~~v~i~dp~~~~~i~~~ 70 (208)
++|||.. .-....+.+++.+||+|..+.+. +.-+|...+++.+..++..
T Consensus 106 fV~nL~~---~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~ 163 (437)
T 3pgw_S 106 FVARVNY---DTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKH 163 (437)
T ss_pred EEeCCCC---CCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHH
Confidence 4566542 23456788899999999887653 2346778899999998854
No 148
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=39.08 E-value=76 Score=20.38 Aligned_cols=49 Identities=18% Similarity=0.246 Sum_probs=35.0
Q ss_pred cccccccCCCCCchHHHHHHHHhhCCeEEEEcCC---------cCEEEecCHHHHHHHHHH
Q 040924 19 FIGTLHQLDVSKPHVLFWELSKKYGPLMSLRLGF---------SPSLVVSSAKMAKEILKT 70 (208)
Q Consensus 19 ~~g~~~~~~~~~~~~~~~~~~~~yG~v~~~~~~~---------~~~v~i~dp~~~~~i~~~ 70 (208)
+++++.. .-....+.+++.+||+|..+.+.. .-+|...+++.++.++..
T Consensus 43 ~V~nlp~---~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~ 100 (156)
T 1h2v_Z 43 YVGNLSF---YTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRY 100 (156)
T ss_dssp EEESCCT---TCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHH
T ss_pred EEeCCCC---CCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHH
Confidence 3555542 334577889999999988876521 236778899999999874
No 149
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=39.05 E-value=35 Score=20.66 Aligned_cols=41 Identities=10% Similarity=0.028 Sum_probs=30.6
Q ss_pred CchHHHHHHHHhhCCeEEEEcCC---------cCEEEecCHHHHHHHHHH
Q 040924 30 KPHVLFWELSKKYGPLMSLRLGF---------SPSLVVSSAKMAKEILKT 70 (208)
Q Consensus 30 ~~~~~~~~~~~~yG~v~~~~~~~---------~~~v~i~dp~~~~~i~~~ 70 (208)
-....+.+++..||+|..+.+.. .-.|...+++.++.++..
T Consensus 39 ~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~ 88 (116)
T 1x4b_A 39 TTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA 88 (116)
T ss_dssp CCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS
T ss_pred CCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh
Confidence 34567889999999987776422 235777899999999865
No 150
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=38.88 E-value=55 Score=19.66 Aligned_cols=65 Identities=15% Similarity=0.035 Sum_probs=38.7
Q ss_pred CCCCccccccccC--CCCCchHHHHHHHHhhCCeEEEEcCC----------cCEEEecCHHHHHHHHHH-cCccCCCC
Q 040924 14 PWGLPFIGTLHQL--DVSKPHVLFWELSKKYGPLMSLRLGF----------SPSLVVSSAKMAKEILKT-HDLQFCSR 78 (208)
Q Consensus 14 p~~~p~~g~~~~~--~~~~~~~~~~~~~~~yG~v~~~~~~~----------~~~v~i~dp~~~~~i~~~-~~~~~~~~ 78 (208)
|...-++.|+..- +..+....+.+.+.+||.|..+.+.. .-.|...+++.+...... ++..|..|
T Consensus 7 ~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr 84 (105)
T 2pe8_A 7 PTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGR 84 (105)
T ss_dssp CCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCc
Confidence 3334455665421 02345678889999999988776421 124667898888888753 44444433
No 151
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=38.41 E-value=58 Score=18.86 Aligned_cols=52 Identities=12% Similarity=0.112 Sum_probs=33.9
Q ss_pred cccccccCCC-CCchHHHHHHHHhhCCeEEEEcC------CcCEEEecCHHHHHHHHHH
Q 040924 19 FIGTLHQLDV-SKPHVLFWELSKKYGPLMSLRLG------FSPSLVVSSAKMAKEILKT 70 (208)
Q Consensus 19 ~~g~~~~~~~-~~~~~~~~~~~~~yG~v~~~~~~------~~~~v~i~dp~~~~~i~~~ 70 (208)
++||+..-.. .++...+.+++.+||+|..+.+. +.-.|...+++.++..+..
T Consensus 13 ~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~ 71 (96)
T 2dgx_A 13 QVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNS 71 (96)
T ss_dssp EEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCSTTCCEEEEESSHHHHHHHHHH
T ss_pred EEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCCCeEEEEEECCHHHHHHHHHH
Confidence 4566653211 12223344899999999888764 2346777899999988863
No 152
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=38.41 E-value=51 Score=18.23 Aligned_cols=40 Identities=10% Similarity=0.003 Sum_probs=29.9
Q ss_pred chHHHHHHHHhhCCeEEEEcC---------CcCEEEecCHHHHHHHHHH
Q 040924 31 PHVLFWELSKKYGPLMSLRLG---------FSPSLVVSSAKMAKEILKT 70 (208)
Q Consensus 31 ~~~~~~~~~~~yG~v~~~~~~---------~~~~v~i~dp~~~~~i~~~ 70 (208)
....+.++...||+|..+.+. +.-.|...+++.++.++..
T Consensus 14 t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~ 62 (83)
T 3md1_A 14 DDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDS 62 (83)
T ss_dssp CHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHH
Confidence 456788889999998877642 1236778899999998864
No 153
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=37.63 E-value=54 Score=18.32 Aligned_cols=49 Identities=12% Similarity=0.102 Sum_probs=34.2
Q ss_pred cccccccCCCCCchHHHHHHHHhhCCeEEEEcCC---------cCEEEecCHHHHHHHHHH
Q 040924 19 FIGTLHQLDVSKPHVLFWELSKKYGPLMSLRLGF---------SPSLVVSSAKMAKEILKT 70 (208)
Q Consensus 19 ~~g~~~~~~~~~~~~~~~~~~~~yG~v~~~~~~~---------~~~v~i~dp~~~~~i~~~ 70 (208)
++|++.. .-....+.+++..||+|..+.+.. .-.|...+++.++.++..
T Consensus 10 ~v~nlp~---~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~ 67 (87)
T 3bs9_A 10 FVGDLSP---EITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQ 67 (87)
T ss_dssp EEESCCT---TCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHH
T ss_pred EEeCCCC---CCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHH
Confidence 3566542 344567889999999988776522 235777899999999864
No 154
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=37.55 E-value=67 Score=19.32 Aligned_cols=51 Identities=12% Similarity=0.139 Sum_probs=36.2
Q ss_pred cccccccCCCCCchHHHHHHHHhhCCeEEEEcCC---------cCEEEecCHHHHHHHHHHcC
Q 040924 19 FIGTLHQLDVSKPHVLFWELSKKYGPLMSLRLGF---------SPSLVVSSAKMAKEILKTHD 72 (208)
Q Consensus 19 ~~g~~~~~~~~~~~~~~~~~~~~yG~v~~~~~~~---------~~~v~i~dp~~~~~i~~~~~ 72 (208)
+++|+.. .-..+.+.+++.+||+|..+.+.. .-.|...+++.++.++....
T Consensus 21 ~V~nlp~---~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~ 80 (116)
T 2cqd_A 21 FVGGLPY---HTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPN 80 (116)
T ss_dssp EEECCCS---SCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSS
T ss_pred EEeCCCC---CCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCC
Confidence 4566542 334567889999999998887643 23577789999999986533
No 155
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=37.54 E-value=64 Score=19.08 Aligned_cols=49 Identities=16% Similarity=0.072 Sum_probs=35.2
Q ss_pred cccccccCCCCCchHHHHHHHHhhCC-eEEEEcC----------CcCEEEecCHHHHHHHHHH
Q 040924 19 FIGTLHQLDVSKPHVLFWELSKKYGP-LMSLRLG----------FSPSLVVSSAKMAKEILKT 70 (208)
Q Consensus 19 ~~g~~~~~~~~~~~~~~~~~~~~yG~-v~~~~~~----------~~~~v~i~dp~~~~~i~~~ 70 (208)
++|++.. .-....+.+++.+||+ |..+.+. +.-.|...+++.+..++..
T Consensus 12 ~V~nLp~---~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~ 71 (109)
T 2dis_A 12 FIGGIPK---MKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRK 71 (109)
T ss_dssp EEECCCT---TSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTT
T ss_pred EEeCCCC---cCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHH
Confidence 4566542 3345678899999998 8888764 1236777899999999864
No 156
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=37.25 E-value=26 Score=21.21 Aligned_cols=54 Identities=15% Similarity=0.156 Sum_probs=35.2
Q ss_pred cccccccCCCCCchHHHH---HHHHhhCCeEEEEcCC------------cCEEEecCHHHHHHHHHH-cCccC
Q 040924 19 FIGTLHQLDVSKPHVLFW---ELSKKYGPLMSLRLGF------------SPSLVVSSAKMAKEILKT-HDLQF 75 (208)
Q Consensus 19 ~~g~~~~~~~~~~~~~~~---~~~~~yG~v~~~~~~~------------~~~v~i~dp~~~~~i~~~-~~~~~ 75 (208)
++||+..- -..+.+. +++.+||+|..+.+.. .-.|...+++.++..+.. ++..+
T Consensus 19 ~V~nLp~~---~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~ 88 (111)
T 2cpi_A 19 FVVGLSQR---LADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVV 88 (111)
T ss_dssp EEEEECTT---TCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEE
T ss_pred EEECCCCC---CCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEE
Confidence 46666532 2234555 8888999988776531 335777899999998865 44333
No 157
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=37.05 E-value=67 Score=19.22 Aligned_cols=40 Identities=13% Similarity=0.199 Sum_probs=31.1
Q ss_pred chHHHHHHHHhhCCeEEEEc-CCcCEEEecCHHHHHHHHHH
Q 040924 31 PHVLFWELSKKYGPLMSLRL-GFSPSLVVSSAKMAKEILKT 70 (208)
Q Consensus 31 ~~~~~~~~~~~yG~v~~~~~-~~~~~v~i~dp~~~~~i~~~ 70 (208)
....+.+++.+||+|..+.+ -+.-.|...+++.+..++..
T Consensus 44 t~~~L~~~F~~~G~i~~v~i~kg~afV~f~~~~~A~~Ai~~ 84 (108)
T 2jvo_A 44 QESELNEIFGPFGPMKEVKILNGFAFVEFEEAESAAKAIEE 84 (108)
T ss_dssp CHHHHHHHHTTTSCCCEEEEETTEEEEECSSHHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCEEEEEEECCEEEEEECCHHHHHHHHHH
Confidence 45678899999999877765 34566777899999998863
No 158
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=36.76 E-value=67 Score=19.13 Aligned_cols=49 Identities=12% Similarity=0.124 Sum_probs=35.6
Q ss_pred ccccccccCCCCCchHHHHHHHHhhCCeEEEEcC---CcCEEEecCHHHHHHHHH
Q 040924 18 PFIGTLHQLDVSKPHVLFWELSKKYGPLMSLRLG---FSPSLVVSSAKMAKEILK 69 (208)
Q Consensus 18 p~~g~~~~~~~~~~~~~~~~~~~~yG~v~~~~~~---~~~~v~i~dp~~~~~i~~ 69 (208)
=++||+.. .--...+.+++..||.|..+.+. +.-.|...+.+.+...+.
T Consensus 18 l~V~nLp~---~~te~~L~~~F~~fG~v~~v~i~~~kg~aFVef~~~~~A~~Ai~ 69 (101)
T 2cq1_A 18 LHIRKLPG---EVTETEVIALGLPFGKVTNILMLKGKNQAFLELATEEAAITMVN 69 (101)
T ss_dssp EEEESCCT---TCCHHHHHHTTTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHH
T ss_pred EEEeCCCC---CCCHHHHHHHHHhcCCEEEEEEECCCCEEEEEECCHHHHHHHHH
Confidence 35677653 33456788999999998887653 345677889998888875
No 159
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=36.74 E-value=68 Score=21.23 Aligned_cols=51 Identities=12% Similarity=0.124 Sum_probs=36.2
Q ss_pred cccccccCCCCCchHHHHHHHHhhCCeEEEEcCC---------cCEEEecCHHHHHHHHHHcC
Q 040924 19 FIGTLHQLDVSKPHVLFWELSKKYGPLMSLRLGF---------SPSLVVSSAKMAKEILKTHD 72 (208)
Q Consensus 19 ~~g~~~~~~~~~~~~~~~~~~~~yG~v~~~~~~~---------~~~v~i~dp~~~~~i~~~~~ 72 (208)
++||+.. .-....+.+++..||+|..+.+.. .-.|...+++.+...+...+
T Consensus 17 ~V~nLp~---~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~ 76 (196)
T 1l3k_A 17 FIGGLSF---ETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARP 76 (196)
T ss_dssp EEESCCT---TCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHTCS
T ss_pred EEeCCCC---CCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhcCC
Confidence 4566542 334677889999999987765421 23688889999999996543
No 160
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=36.28 E-value=85 Score=20.41 Aligned_cols=40 Identities=15% Similarity=0.280 Sum_probs=30.7
Q ss_pred chHHHHHHHHhhC--CeEEEEcC-----C----cCEEEecCHHHHHHHHHH
Q 040924 31 PHVLFWELSKKYG--PLMSLRLG-----F----SPSLVVSSAKMAKEILKT 70 (208)
Q Consensus 31 ~~~~~~~~~~~yG--~v~~~~~~-----~----~~~v~i~dp~~~~~i~~~ 70 (208)
....+.+++..|| .|..+.+. + .-.|...+++.+..++..
T Consensus 68 te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~ 118 (156)
T 3n9u_C 68 TDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLEL 118 (156)
T ss_dssp CHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHH
Confidence 3577889999999 88777652 1 246778899999999865
No 161
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=36.24 E-value=62 Score=18.58 Aligned_cols=52 Identities=10% Similarity=0.241 Sum_probs=35.0
Q ss_pred cccccccCCC-CCchHHHHHHHHhhCCeEEEEcC------CcCEEEecCHHHHHHHHHH
Q 040924 19 FIGTLHQLDV-SKPHVLFWELSKKYGPLMSLRLG------FSPSLVVSSAKMAKEILKT 70 (208)
Q Consensus 19 ~~g~~~~~~~-~~~~~~~~~~~~~yG~v~~~~~~------~~~~v~i~dp~~~~~i~~~ 70 (208)
++||+..-.. .++...+.+++.+||+|..+.+. +.-.|...+++.+...+..
T Consensus 12 ~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~ 70 (97)
T 1nu4_A 12 YINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRS 70 (97)
T ss_dssp EEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHH
T ss_pred EEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHH
Confidence 4677653211 12223445999999999888764 4456788899999998864
No 162
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=35.81 E-value=61 Score=18.37 Aligned_cols=49 Identities=16% Similarity=0.309 Sum_probs=35.4
Q ss_pred cccccccCCCCCchHHHHHHHHhhCCeEEEEc-CCcCEEEecCHHHHHHHHHH
Q 040924 19 FIGTLHQLDVSKPHVLFWELSKKYGPLMSLRL-GFSPSLVVSSAKMAKEILKT 70 (208)
Q Consensus 19 ~~g~~~~~~~~~~~~~~~~~~~~yG~v~~~~~-~~~~~v~i~dp~~~~~i~~~ 70 (208)
++||+.. .-....+.+++.+||+|..+.+ -+.-.|...+++.++.++..
T Consensus 12 ~V~nlp~---~~t~~~l~~~F~~~G~i~~v~~~~g~afV~f~~~~~A~~A~~~ 61 (90)
T 2dnq_A 12 FIGNLPR---EATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRN 61 (90)
T ss_dssp EEESCCS---SCCHHHHHHHHHTSSCEEEEEEETTEEEEEESSHHHHHHHHHH
T ss_pred EEeCCCC---CCCHHHHHHHHHhCCCEEEEEEECCEEEEEECCHHHHHHHHHH
Confidence 4566542 3345678899999999888765 33456777899999998853
No 163
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=35.52 E-value=51 Score=20.30 Aligned_cols=50 Identities=12% Similarity=0.152 Sum_probs=35.5
Q ss_pred ccccccccCCCCCchHHHHHHHHhhCCeEEEEcCC---cCEEEecCHHHHHHHHH
Q 040924 18 PFIGTLHQLDVSKPHVLFWELSKKYGPLMSLRLGF---SPSLVVSSAKMAKEILK 69 (208)
Q Consensus 18 p~~g~~~~~~~~~~~~~~~~~~~~yG~v~~~~~~~---~~~v~i~dp~~~~~i~~ 69 (208)
=++||+..- +-....+.+++..||.|..+++.. .-.|-..+++.+...+.
T Consensus 28 l~V~NLp~~--~~te~~L~~lF~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~ 80 (112)
T 1x4f_A 28 IHLSNLPHS--GYSDSAVLKLAEPYGKIKNYILMRMKSQAFIEMETREDAMAMVD 80 (112)
T ss_dssp EEEESCCCS--SCCSHHHHTTTTTTSCCSEEEEETTTTEEEEECSSHHHHHHHHH
T ss_pred EEEeCCCCc--cCCHHHHHHHHHhcCCEEEEEEecCCCEEEEEECCHHHHHHHHH
Confidence 456776531 134567888999999988887643 34677789998888875
No 164
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=35.43 E-value=77 Score=20.11 Aligned_cols=39 Identities=10% Similarity=0.094 Sum_probs=30.0
Q ss_pred chHHHHHHHHhhCCeEEEEcC--------CcCEEEecCHHHHHHHHH
Q 040924 31 PHVLFWELSKKYGPLMSLRLG--------FSPSLVVSSAKMAKEILK 69 (208)
Q Consensus 31 ~~~~~~~~~~~yG~v~~~~~~--------~~~~v~i~dp~~~~~i~~ 69 (208)
....+.+++++||+|..+.+. +.-.|...+++.+..++.
T Consensus 13 t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~ 59 (166)
T 3md3_A 13 TEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQ 59 (166)
T ss_dssp CHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHH
Confidence 456788999999998877652 224677789999999984
No 165
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=35.36 E-value=86 Score=19.91 Aligned_cols=40 Identities=20% Similarity=0.077 Sum_probs=30.5
Q ss_pred chHHHHHHHHhhCCeEEEEcC---------CcCEEEecCHHHHHHHHHH
Q 040924 31 PHVLFWELSKKYGPLMSLRLG---------FSPSLVVSSAKMAKEILKT 70 (208)
Q Consensus 31 ~~~~~~~~~~~yG~v~~~~~~---------~~~~v~i~dp~~~~~i~~~ 70 (208)
....+.++...||+|..+.+. +.-.|...+++.++..+..
T Consensus 15 ~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~ 63 (167)
T 1fxl_A 15 TQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 63 (167)
T ss_dssp CHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHH
Confidence 456788999999998877642 2236778899999999863
No 166
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=35.27 E-value=68 Score=18.77 Aligned_cols=52 Identities=15% Similarity=0.089 Sum_probs=35.8
Q ss_pred cccccccCCC---CCchHHHHHHHHhhCCeEEEEcC---------CcCEEEecCHHHHHHHHHH
Q 040924 19 FIGTLHQLDV---SKPHVLFWELSKKYGPLMSLRLG---------FSPSLVVSSAKMAKEILKT 70 (208)
Q Consensus 19 ~~g~~~~~~~---~~~~~~~~~~~~~yG~v~~~~~~---------~~~~v~i~dp~~~~~i~~~ 70 (208)
++||++.... ......+.+++.+||+|..+.+. |.-.|...+++.++..+..
T Consensus 10 fV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~ 73 (100)
T 3ns6_A 10 VVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKS 73 (100)
T ss_dssp EEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHH
T ss_pred EEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHH
Confidence 4566654311 22346788899999999888764 2346788899999998853
No 167
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=35.21 E-value=66 Score=18.57 Aligned_cols=50 Identities=14% Similarity=0.310 Sum_probs=36.2
Q ss_pred cccccccCCCCCchHHHHHHHHhhCCeEEEEc-CCcCEEEecCHHHHHHHHHH
Q 040924 19 FIGTLHQLDVSKPHVLFWELSKKYGPLMSLRL-GFSPSLVVSSAKMAKEILKT 70 (208)
Q Consensus 19 ~~g~~~~~~~~~~~~~~~~~~~~yG~v~~~~~-~~~~~v~i~dp~~~~~i~~~ 70 (208)
++|++.. ..-....+.+++..||+|..+.+ -+.-.|...+++.+..++..
T Consensus 14 ~V~nlp~--~~~t~~~l~~~F~~~G~v~~v~i~~g~afV~f~~~~~A~~A~~~ 64 (96)
T 2kvi_A 14 FIGNLPL--KNVSKEDLFRIFSPYGHIMQINIKNAFGFIQFDNPQSVRDAIEC 64 (96)
T ss_dssp EEESSTT--SCCCHHHHHHHHTTTCCCCEEEEETTEEEEEESCHHHHHHHHHH
T ss_pred EEeCCCc--ccCCHHHHHHHHHhcCCEEEEEEeCCEEEEEECCHHHHHHHHHH
Confidence 4566652 03345678899999999888765 34566778899999999864
No 168
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=35.14 E-value=72 Score=19.02 Aligned_cols=49 Identities=10% Similarity=0.043 Sum_probs=34.4
Q ss_pred cccccccCCCCCchHHHHHHHHhhCCeEEEEcCC--------cCEEEecCHHHHHHHHHH
Q 040924 19 FIGTLHQLDVSKPHVLFWELSKKYGPLMSLRLGF--------SPSLVVSSAKMAKEILKT 70 (208)
Q Consensus 19 ~~g~~~~~~~~~~~~~~~~~~~~yG~v~~~~~~~--------~~~v~i~dp~~~~~i~~~ 70 (208)
+++|+.. .-....+.+++.+||+|..+.+.. .-+|...+++.++.++..
T Consensus 19 ~V~nlp~---~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~ 75 (114)
T 2do0_A 19 FVANLDY---KVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISM 75 (114)
T ss_dssp EEESCCT---TCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHH
T ss_pred EEeCCCC---CCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHH
Confidence 4566542 335577889999999987765422 235777899999998863
No 169
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=34.62 E-value=84 Score=19.58 Aligned_cols=50 Identities=18% Similarity=0.086 Sum_probs=35.1
Q ss_pred ccccccccCCCCCchHHHHHHHHhhCCeEEEEcC---------CcCEEEecCHHHHHHHHHH
Q 040924 18 PFIGTLHQLDVSKPHVLFWELSKKYGPLMSLRLG---------FSPSLVVSSAKMAKEILKT 70 (208)
Q Consensus 18 p~~g~~~~~~~~~~~~~~~~~~~~yG~v~~~~~~---------~~~~v~i~dp~~~~~i~~~ 70 (208)
-++|++.. .-..+.+.+++.+||+|..+.+. +.-.|...+++.++.++..
T Consensus 49 l~V~nLp~---~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~ 107 (129)
T 2kxn_B 49 LGVFGLSL---YTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKER 107 (129)
T ss_dssp BCEETCTT---SCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHH
T ss_pred EEEeCCCC---CCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHH
Confidence 34566542 33456788999999998887653 1235777899999999864
No 170
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=34.41 E-value=43 Score=19.52 Aligned_cols=49 Identities=16% Similarity=0.155 Sum_probs=34.2
Q ss_pred cccccccCCCCCchHHHHHHHHhhCCeEEEEcCC---cCEEEecCHHHHHHHHHH
Q 040924 19 FIGTLHQLDVSKPHVLFWELSKKYGPLMSLRLGF---SPSLVVSSAKMAKEILKT 70 (208)
Q Consensus 19 ~~g~~~~~~~~~~~~~~~~~~~~yG~v~~~~~~~---~~~v~i~dp~~~~~i~~~ 70 (208)
++|++.. .-....+.+++.+||+|..+.+.. .-.|...+++.+..++..
T Consensus 19 ~V~nlp~---~~t~~~l~~~F~~~G~i~~v~~~~~kg~afV~f~~~~~a~~a~~~ 70 (99)
T 2cpj_A 19 FVGNLPP---DITEEEMRKLFEKYGKAGEVFIHKDKGFGFIRLETRTLAEIAKVE 70 (99)
T ss_dssp EEESCCT---TCCHHHHHHHTSTTCCCSEEEEETTTTEEEEECSSSHHHHHHHHH
T ss_pred EEeCCCC---CCCHHHHHHHHhhcCCeEEEEEecCCCEEEEEECCHHHHHHHHHH
Confidence 4566542 334567889999999988776543 345667788888888743
No 171
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=34.26 E-value=70 Score=18.56 Aligned_cols=49 Identities=22% Similarity=0.150 Sum_probs=34.8
Q ss_pred cccccccCCCCCchHHHHHHHHhhCCeEEEEcC--------CcCEEEecCHHHHHHHHHH
Q 040924 19 FIGTLHQLDVSKPHVLFWELSKKYGPLMSLRLG--------FSPSLVVSSAKMAKEILKT 70 (208)
Q Consensus 19 ~~g~~~~~~~~~~~~~~~~~~~~yG~v~~~~~~--------~~~~v~i~dp~~~~~i~~~ 70 (208)
++|++.. .-....+.+++..||+|..+.+. +.-.|...+++.++.++..
T Consensus 21 ~v~nlp~---~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~ 77 (100)
T 2do4_A 21 FISGLPF---SCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMK 77 (100)
T ss_dssp EEESCCT---TCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHH
T ss_pred EEeCCCC---CCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHH
Confidence 4566542 33456788999999998877653 2246777899999998854
No 172
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=34.14 E-value=65 Score=19.44 Aligned_cols=40 Identities=10% Similarity=0.061 Sum_probs=30.4
Q ss_pred chHHHHHHHHhhCCeEEEEcCC---------cCEEEecCHHHHHHHHHH
Q 040924 31 PHVLFWELSKKYGPLMSLRLGF---------SPSLVVSSAKMAKEILKT 70 (208)
Q Consensus 31 ~~~~~~~~~~~yG~v~~~~~~~---------~~~v~i~dp~~~~~i~~~ 70 (208)
..+.+.+++.+||+|..+.+.. .-.|...+++.++..+..
T Consensus 53 t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~ 101 (118)
T 2khc_A 53 TDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKA 101 (118)
T ss_dssp CHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHH
Confidence 4577889999999988877632 235777899999988864
No 173
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=33.75 E-value=70 Score=19.72 Aligned_cols=40 Identities=10% Similarity=0.178 Sum_probs=30.5
Q ss_pred chHHHHHHHHhhCCeEEEEcC---CcCEEEecCHHHHHHHHHH
Q 040924 31 PHVLFWELSKKYGPLMSLRLG---FSPSLVVSSAKMAKEILKT 70 (208)
Q Consensus 31 ~~~~~~~~~~~yG~v~~~~~~---~~~~v~i~dp~~~~~i~~~ 70 (208)
....+.+++.+||+|..+.+. +.-.|...+++.+..++..
T Consensus 50 te~~L~~~F~~~G~I~~v~i~~~kg~aFV~f~~~~~A~~Ai~~ 92 (121)
T 2bz2_A 50 TPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKMESADQAVAE 92 (121)
T ss_dssp CHHHHHHHHSTTCCCSCEEEETTTTEEEEECSSHHHHHHHHHH
T ss_pred CHHHHHHHHHccCCEEEEEEeCCCCEEEEEECCHHHHHHHHHH
Confidence 457788999999998777654 3346777899999888854
No 174
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=33.22 E-value=1.1e+02 Score=20.54 Aligned_cols=41 Identities=12% Similarity=0.092 Sum_probs=31.8
Q ss_pred CchHHHHHHHHhhCCeEEEEcC---------CcCEEEecCHHHHHHHHHH
Q 040924 30 KPHVLFWELSKKYGPLMSLRLG---------FSPSLVVSSAKMAKEILKT 70 (208)
Q Consensus 30 ~~~~~~~~~~~~yG~v~~~~~~---------~~~~v~i~dp~~~~~i~~~ 70 (208)
-..+.+.+++.+||+|..+.+. +.-.|...+++.+..++..
T Consensus 40 ~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~ 89 (216)
T 2qfj_A 40 LGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 89 (216)
T ss_dssp CCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHH
T ss_pred CCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHH
Confidence 3457788999999999888763 2246778899999999863
No 175
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=33.02 E-value=87 Score=19.32 Aligned_cols=41 Identities=12% Similarity=0.007 Sum_probs=31.9
Q ss_pred CchHHHHHHHHhhCCeEEEEcCC---cCEEEecCHHHHHHHHHH
Q 040924 30 KPHVLFWELSKKYGPLMSLRLGF---SPSLVVSSAKMAKEILKT 70 (208)
Q Consensus 30 ~~~~~~~~~~~~yG~v~~~~~~~---~~~v~i~dp~~~~~i~~~ 70 (208)
-..+.+.+.+.+||.|..+.+.. .-.|...+++.++..+..
T Consensus 39 ~te~~L~~~F~~fG~v~~v~i~~~rgfaFV~f~~~~~A~~Ai~~ 82 (114)
T 2cq2_A 39 VSRNQLLPVLEKCGLVDALLMPPNKPYSFARYRTTEESKRAYVT 82 (114)
T ss_dssp CCHHHHHHHHHHHSCEEEEECCTTCSCEEEEESSHHHHHHHHHH
T ss_pred CCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEECCHHHHHHHHHH
Confidence 34578899999999998887642 346777899999888864
No 176
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=32.97 E-value=70 Score=18.18 Aligned_cols=47 Identities=17% Similarity=0.171 Sum_probs=30.6
Q ss_pred ccccccCCCCCchHHHHHHHHhhC--CeEEEEcCC---------cCEEEecCHHHHHHHHH
Q 040924 20 IGTLHQLDVSKPHVLFWELSKKYG--PLMSLRLGF---------SPSLVVSSAKMAKEILK 69 (208)
Q Consensus 20 ~g~~~~~~~~~~~~~~~~~~~~yG--~v~~~~~~~---------~~~v~i~dp~~~~~i~~ 69 (208)
+||+.. .-....+.+++..|| +|..+.+.. .-.|...+++.++..+.
T Consensus 6 V~nL~~---~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~ 63 (90)
T 3p5t_L 6 IGNLTW---WTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMD 63 (90)
T ss_dssp EESCCT---TCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHH
T ss_pred EeCCCC---CCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHH
Confidence 455432 234567888999999 776665321 13566789999988885
No 177
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=32.55 E-value=75 Score=18.44 Aligned_cols=40 Identities=8% Similarity=0.033 Sum_probs=29.8
Q ss_pred chHHHHHHHHhhCCeEEEEcC---CcCEEEecCHHHHHHHHHH
Q 040924 31 PHVLFWELSKKYGPLMSLRLG---FSPSLVVSSAKMAKEILKT 70 (208)
Q Consensus 31 ~~~~~~~~~~~yG~v~~~~~~---~~~~v~i~dp~~~~~i~~~ 70 (208)
....+.+++.+||.|..+.+. +.-.|...+.+.+..++..
T Consensus 40 ~~~~l~~~f~~~G~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~ 82 (101)
T 2la4_A 40 TEADLIPLFQNFGFILDFKHYPEKGCCFIKYDTHEQAAVCIVA 82 (101)
T ss_dssp CHHHHHHHHHTTSCCSEEEEETTTTEEEEECSSHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCEEEEEEecCCCEEEEEECCHHHHHHHHHH
Confidence 457788999999998877653 3345667788888888753
No 178
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=32.49 E-value=73 Score=18.23 Aligned_cols=48 Identities=15% Similarity=0.292 Sum_probs=33.6
Q ss_pred cccccccCCCCCchHHHHHHHHhhCCeEEE-EcCC---------cCEEEecCHHHHHHHHH
Q 040924 19 FIGTLHQLDVSKPHVLFWELSKKYGPLMSL-RLGF---------SPSLVVSSAKMAKEILK 69 (208)
Q Consensus 19 ~~g~~~~~~~~~~~~~~~~~~~~yG~v~~~-~~~~---------~~~v~i~dp~~~~~i~~ 69 (208)
++||+.. .-....+.+++..||+|..+ .+.. .-.|...+++.++.++.
T Consensus 9 ~V~nLp~---~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~ 66 (96)
T 1x5t_A 9 FIGNLDP---EIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIE 66 (96)
T ss_dssp EEECCCT---TCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHH
T ss_pred EEeCCCC---CCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHH
Confidence 4566542 33467788999999987665 4422 23577789999999986
No 179
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=31.56 E-value=86 Score=19.35 Aligned_cols=50 Identities=14% Similarity=0.074 Sum_probs=33.8
Q ss_pred CCchHHHHHHHHhhCCeEEEEcCC-------------cCEEEecCHHHHHHHHHH-cCccCCCC
Q 040924 29 SKPHVLFWELSKKYGPLMSLRLGF-------------SPSLVVSSAKMAKEILKT-HDLQFCSR 78 (208)
Q Consensus 29 ~~~~~~~~~~~~~yG~v~~~~~~~-------------~~~v~i~dp~~~~~i~~~-~~~~~~~~ 78 (208)
.+....+.+.+.+||+|..+.+.. .-.|...+++.+...... ++..|..|
T Consensus 36 ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~GR 99 (118)
T 3ue2_A 36 DDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGR 99 (118)
T ss_dssp TTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred HHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECCc
Confidence 456678889999999988776432 234666789888887754 44445444
No 180
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=31.56 E-value=80 Score=18.41 Aligned_cols=48 Identities=6% Similarity=0.049 Sum_probs=34.4
Q ss_pred cccccccCCCCCchHHHHHHHHhhCCeEEEEcCC---------cCEEEecCHHHHHHHHH
Q 040924 19 FIGTLHQLDVSKPHVLFWELSKKYGPLMSLRLGF---------SPSLVVSSAKMAKEILK 69 (208)
Q Consensus 19 ~~g~~~~~~~~~~~~~~~~~~~~yG~v~~~~~~~---------~~~v~i~dp~~~~~i~~ 69 (208)
++||+.. .-....+.+++..||+|..+.+.. .-.|...+++.+..++.
T Consensus 19 ~v~nlp~---~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~ 75 (103)
T 2cqg_A 19 IVLGLPW---KTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS 75 (103)
T ss_dssp EEESCCS---SCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH
T ss_pred EEEcCCC---cCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH
Confidence 4566542 344567889999999988776521 23577789999999996
No 181
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=30.99 E-value=1.2e+02 Score=20.17 Aligned_cols=47 Identities=9% Similarity=0.121 Sum_probs=34.4
Q ss_pred chHHHHHHHHhhCCeEEEEcC----CcCEEEecCHHHHHHHHH-HcCccCCC
Q 040924 31 PHVLFWELSKKYGPLMSLRLG----FSPSLVVSSAKMAKEILK-THDLQFCS 77 (208)
Q Consensus 31 ~~~~~~~~~~~yG~v~~~~~~----~~~~v~i~dp~~~~~i~~-~~~~~~~~ 77 (208)
....+.+++..||+|..+.+. +.-.|...+++.++..+. -++..+..
T Consensus 17 ~~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g 68 (198)
T 1qm9_A 17 TPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHG 68 (198)
T ss_dssp CHHHHHHHHHTTCCCSEEECSTTCSSCCEEECTTTHHHHHHHHHHTTCCCSS
T ss_pred CHHHHHHHHHhcCCEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCeecC
Confidence 457788999999998888764 345788889999999886 34434433
No 182
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=30.65 E-value=74 Score=17.74 Aligned_cols=49 Identities=18% Similarity=0.233 Sum_probs=34.2
Q ss_pred cccccccCCCCCchHHHHHHHHhhCCeEEEEcC----------CcCEEEecCHHHHHHHHHH
Q 040924 19 FIGTLHQLDVSKPHVLFWELSKKYGPLMSLRLG----------FSPSLVVSSAKMAKEILKT 70 (208)
Q Consensus 19 ~~g~~~~~~~~~~~~~~~~~~~~yG~v~~~~~~----------~~~~v~i~dp~~~~~i~~~ 70 (208)
++||+.. .-....+.+++..||+|..+.+. +.-.|...+++.++.++..
T Consensus 8 ~V~nlp~---~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~ 66 (88)
T 4a8x_A 8 HIGRLTR---NVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKH 66 (88)
T ss_dssp EEECCCT---TCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHH
T ss_pred EEeCCCC---CCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHH
Confidence 3455432 33456788889999998877652 2335777899999999864
No 183
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=30.46 E-value=89 Score=18.62 Aligned_cols=49 Identities=20% Similarity=0.331 Sum_probs=34.7
Q ss_pred cccccccCCCCCchHHHHHHHHhhCCeEEEEcC---------CcCEEEecCHHHHHHHHHH
Q 040924 19 FIGTLHQLDVSKPHVLFWELSKKYGPLMSLRLG---------FSPSLVVSSAKMAKEILKT 70 (208)
Q Consensus 19 ~~g~~~~~~~~~~~~~~~~~~~~yG~v~~~~~~---------~~~~v~i~dp~~~~~i~~~ 70 (208)
++|++.. .-....+.+++.+||+|..+.+. +.-.|...+++.+..++..
T Consensus 30 ~V~nLp~---~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~ 87 (108)
T 2jrs_A 30 YVGSLHF---NITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQ 87 (108)
T ss_dssp EEECCCS---SCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHH
T ss_pred EEeCCCC---CCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHH
Confidence 4566542 34566788999999998777653 1235777899999999853
No 184
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=29.65 E-value=94 Score=18.63 Aligned_cols=51 Identities=12% Similarity=0.055 Sum_probs=36.7
Q ss_pred CccccccccCCCCCchHHHHHHHHhhCCeEEEEcC---CcCEEEecCHHHHHHHHHH
Q 040924 17 LPFIGTLHQLDVSKPHVLFWELSKKYGPLMSLRLG---FSPSLVVSSAKMAKEILKT 70 (208)
Q Consensus 17 ~p~~g~~~~~~~~~~~~~~~~~~~~yG~v~~~~~~---~~~~v~i~dp~~~~~i~~~ 70 (208)
.=.+||+.. .-....+.+++..||.|..+.+. +.-.|...+.+.++..+..
T Consensus 23 ~l~V~NLp~---~~te~~L~~lF~~fG~V~~v~i~~~kg~AFVef~~~~~A~~Av~~ 76 (100)
T 3r27_A 23 VVHIRGLID---GVVEADLVEALQEFGPISYVVVMPKKRQALVEFEDVLGACNAVNY 76 (100)
T ss_dssp EEEEESCCT---TCCHHHHHHHHGGGSCEEEEEEETTTTEEEEEESSHHHHHHHHHH
T ss_pred EEEEeCCCC---CCCHHHHHHHHhccCCEEEEEEEcCCCEEEEEECCHHHHHHHHHH
Confidence 345677652 34456788999999998887653 3456777899988888753
No 185
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=29.62 E-value=1.1e+02 Score=19.44 Aligned_cols=48 Identities=17% Similarity=0.207 Sum_probs=34.3
Q ss_pred cccccccCCCCCchHHHHHHHHhhCCeEEEEcCC---------cCEEEecCHHHHHHHHH
Q 040924 19 FIGTLHQLDVSKPHVLFWELSKKYGPLMSLRLGF---------SPSLVVSSAKMAKEILK 69 (208)
Q Consensus 19 ~~g~~~~~~~~~~~~~~~~~~~~yG~v~~~~~~~---------~~~v~i~dp~~~~~i~~ 69 (208)
++|+++. .-..+.+.++...||+|..+.+.. .-.|...+++.++.++.
T Consensus 7 ~v~nlp~---~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~ 63 (168)
T 1b7f_A 7 IVNYLPQ---DMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIK 63 (168)
T ss_dssp EEECCCT---TCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHH
T ss_pred EEeCCCC---CCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHH
Confidence 3455432 334567889999999998876532 34677789999999985
No 186
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=29.54 E-value=87 Score=18.23 Aligned_cols=54 Identities=9% Similarity=0.072 Sum_probs=37.2
Q ss_pred cccccccCCCCCchHHHHHHHHhhCCeEEEEcCC---------cCEEEecCHHHHHHHHHH-cCccC
Q 040924 19 FIGTLHQLDVSKPHVLFWELSKKYGPLMSLRLGF---------SPSLVVSSAKMAKEILKT-HDLQF 75 (208)
Q Consensus 19 ~~g~~~~~~~~~~~~~~~~~~~~yG~v~~~~~~~---------~~~v~i~dp~~~~~i~~~-~~~~~ 75 (208)
++||+.. .-....+.+++.+||+|..+.+.. .-.|...+++.++.++.. ++..+
T Consensus 17 ~V~nLp~---~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~ 80 (103)
T 2dnm_A 17 KVDNLTY---RTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAEL 80 (103)
T ss_dssp EEESCCT---TCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCB
T ss_pred EEeCCCC---CCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEE
Confidence 4566542 334567889999999998887642 236777899999988863 44334
No 187
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=29.52 E-value=84 Score=18.02 Aligned_cols=42 Identities=12% Similarity=-0.031 Sum_probs=30.0
Q ss_pred CCchHHHHHHHHhhC-CeEEEEcCC---------cCEEEecCHHHHHHHHHH
Q 040924 29 SKPHVLFWELSKKYG-PLMSLRLGF---------SPSLVVSSAKMAKEILKT 70 (208)
Q Consensus 29 ~~~~~~~~~~~~~yG-~v~~~~~~~---------~~~v~i~dp~~~~~i~~~ 70 (208)
.-....+.+++..|| +|..+.+.. .-.|...+++.++..+..
T Consensus 12 ~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~ 63 (91)
T 2lxi_A 12 AATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEA 63 (91)
T ss_dssp SCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHh
Confidence 344678889999999 666665421 135778899999999854
No 188
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=29.41 E-value=88 Score=18.22 Aligned_cols=54 Identities=17% Similarity=0.109 Sum_probs=36.9
Q ss_pred CCCCccccccccCCCCCchHHHHHHHHh-hCCeEEEEcC--------CcCEEEecCHHHHHHHHHH
Q 040924 14 PWGLPFIGTLHQLDVSKPHVLFWELSKK-YGPLMSLRLG--------FSPSLVVSSAKMAKEILKT 70 (208)
Q Consensus 14 p~~~p~~g~~~~~~~~~~~~~~~~~~~~-yG~v~~~~~~--------~~~~v~i~dp~~~~~i~~~ 70 (208)
|...=++||+.. .-....+.+++.. ||+|..+.+. +.-.|...+++.+..++..
T Consensus 8 ~~~~l~V~nLp~---~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~ 70 (104)
T 2dhg_A 8 PEYSLFVGDLTP---DVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTE 70 (104)
T ss_dssp CCCCEEEECCCT---TCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHH
T ss_pred CCcEEEEeCCCC---CCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHH
Confidence 333345677653 3345678888898 9998877652 1235777899999999864
No 189
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=29.20 E-value=1.1e+02 Score=20.83 Aligned_cols=49 Identities=22% Similarity=0.387 Sum_probs=35.3
Q ss_pred cccccccCCCCCchHHHHHHHHhhCCeEEEEcC---------CcCEEEecCHHHHHHHHHH
Q 040924 19 FIGTLHQLDVSKPHVLFWELSKKYGPLMSLRLG---------FSPSLVVSSAKMAKEILKT 70 (208)
Q Consensus 19 ~~g~~~~~~~~~~~~~~~~~~~~yG~v~~~~~~---------~~~~v~i~dp~~~~~i~~~ 70 (208)
++||+.. .--.+.+.+++++||+|..+.+. +.-.|...+++.+...+..
T Consensus 19 fVgnLp~---~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~ 76 (213)
T 4f02_A 19 YVGDLHP---DVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 76 (213)
T ss_dssp EEESCCT---TCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHH
T ss_pred EEeCCCC---CCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHH
Confidence 4566542 33467888999999998877642 1236788899999998864
No 190
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=29.03 E-value=88 Score=19.86 Aligned_cols=48 Identities=10% Similarity=0.103 Sum_probs=33.4
Q ss_pred ccccccCCCCCchHHHHHHHHhhCCeEEEEcCCc-----CEEEecCHHHHHHHHHH
Q 040924 20 IGTLHQLDVSKPHVLFWELSKKYGPLMSLRLGFS-----PSLVVSSAKMAKEILKT 70 (208)
Q Consensus 20 ~g~~~~~~~~~~~~~~~~~~~~yG~v~~~~~~~~-----~~v~i~dp~~~~~i~~~ 70 (208)
+||+.. .--.+.+.+++.+||.|..+.+... -.|...|++.++.....
T Consensus 33 V~NL~~---~vte~~L~~lFs~yG~V~~V~i~~~~~gfqAFVef~~~~~A~~Ai~~ 85 (130)
T 3zzy_A 33 VENLFY---PVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLS 85 (130)
T ss_dssp EESCCS---CCCHHHHHHHHTTSSCEEEEEEEEETTEEEEEEEESCHHHHHHHHHH
T ss_pred ECCCCC---CCCHHHHHHHHhCcCCEEEEEEEcCCCCcEEEEEECCHHHHHHHHHH
Confidence 566531 2345678899999999888765322 46777888888887753
No 191
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=28.85 E-value=90 Score=18.16 Aligned_cols=56 Identities=11% Similarity=0.062 Sum_probs=37.6
Q ss_pred CccccccccCCCCCchHHHHHHHHhhCCeEEEEcC-------CcCEEEecCHHHHHHHHHH-cCccC
Q 040924 17 LPFIGTLHQLDVSKPHVLFWELSKKYGPLMSLRLG-------FSPSLVVSSAKMAKEILKT-HDLQF 75 (208)
Q Consensus 17 ~p~~g~~~~~~~~~~~~~~~~~~~~yG~v~~~~~~-------~~~~v~i~dp~~~~~i~~~-~~~~~ 75 (208)
.-++||+.. .-....+.+++.+||+|..+.+. +.-.|...+++.+..++.. ++..+
T Consensus 17 ~l~V~nlp~---~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~ 80 (103)
T 2d9p_A 17 NLYVKNLDD---GIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIV 80 (103)
T ss_dssp CEEEECCCT---TCCHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBS
T ss_pred EEEEeCCCC---CCCHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEe
Confidence 345666643 33456788888999998877653 1245777899999999863 33334
No 192
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=28.53 E-value=1.3e+02 Score=20.48 Aligned_cols=49 Identities=8% Similarity=0.069 Sum_probs=35.7
Q ss_pred cccccccCCCCCchHHHHHHHHhhCCeEEEEcC----CcCEEEecCHHHHHHHHH
Q 040924 19 FIGTLHQLDVSKPHVLFWELSKKYGPLMSLRLG----FSPSLVVSSAKMAKEILK 69 (208)
Q Consensus 19 ~~g~~~~~~~~~~~~~~~~~~~~yG~v~~~~~~----~~~~v~i~dp~~~~~i~~ 69 (208)
++||+... .--.+.+.+++..||+|..+.+. +.-.|...+++.++..+.
T Consensus 8 ~V~nL~~~--~~~~~~L~~~F~~~G~v~~v~i~~~~~g~afV~f~~~~~A~~Ai~ 60 (205)
T 3tyt_A 8 MVYGLDQS--KMNCDRVFNVFCLYGNVEKVKFMKSKPGAAMVEMADGYAVDRAIT 60 (205)
T ss_dssp EEECCCTT--TCCHHHHHHHHTTTSCEEEEEECTTSTTCEEEEESSHHHHHHHHH
T ss_pred EEeCCCcc--cCCHHHHHHHHHhcCCeEEEEEecCCCCEEEEEECCHHHHHHHHH
Confidence 46776511 22345788999999999988764 345788889999998875
No 193
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=28.49 E-value=93 Score=18.19 Aligned_cols=51 Identities=14% Similarity=0.186 Sum_probs=35.5
Q ss_pred cccccccCCCCCchHHHHHHHHhhCCeEEEEcCC---------cCEEEecCHHHHHHHHHHcC
Q 040924 19 FIGTLHQLDVSKPHVLFWELSKKYGPLMSLRLGF---------SPSLVVSSAKMAKEILKTHD 72 (208)
Q Consensus 19 ~~g~~~~~~~~~~~~~~~~~~~~yG~v~~~~~~~---------~~~v~i~dp~~~~~i~~~~~ 72 (208)
++|++.. .-....+.+++.+||+|..+.+.. .-.|...+++.++.++..++
T Consensus 20 ~V~nlp~---~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~~~ 79 (105)
T 2dh8_A 20 FVGGLDW---STTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRP 79 (105)
T ss_dssp CCBSCCT---TCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHHCS
T ss_pred EEeCCCC---CCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHhCC
Confidence 4566542 344567889999999988776422 23577789999999987643
No 194
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=28.07 E-value=93 Score=18.09 Aligned_cols=43 Identities=9% Similarity=-0.010 Sum_probs=30.1
Q ss_pred hHHHHHHHHhhCCeEEEEcCC----------cCEEEecCHHHHHHHHHHcCccC
Q 040924 32 HVLFWELSKKYGPLMSLRLGF----------SPSLVVSSAKMAKEILKTHDLQF 75 (208)
Q Consensus 32 ~~~~~~~~~~yG~v~~~~~~~----------~~~v~i~dp~~~~~i~~~~~~~~ 75 (208)
...+.+++..|| |..+.+.. .-.|...+.+.++.++..++..+
T Consensus 33 ~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai~l~g~~~ 85 (100)
T 2j76_E 33 EESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESL 85 (100)
T ss_dssp SSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHHHTTTCCB
T ss_pred HHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHHhcCCCEE
Confidence 456778888999 88887532 23577789999999984334333
No 195
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=28.06 E-value=94 Score=18.63 Aligned_cols=45 Identities=11% Similarity=0.189 Sum_probs=31.3
Q ss_pred CCchHHHHHHHHhhCCeEEEEc-CCcCEEEecCHHHHHHHHHHcCc
Q 040924 29 SKPHVLFWELSKKYGPLMSLRL-GFSPSLVVSSAKMAKEILKTHDL 73 (208)
Q Consensus 29 ~~~~~~~~~~~~~yG~v~~~~~-~~~~~v~i~dp~~~~~i~~~~~~ 73 (208)
.+....+.+....||.+..+++ ...-+|...|.+.+..++..++.
T Consensus 35 ~~l~~~L~~~F~~~G~Vilvr~v~d~~fVtF~d~~sAl~AI~ldG~ 80 (95)
T 1ufw_A 35 EDLRTELMQTLGSYGTIVLVRINQGQMLVTFADSHSALSVLDVDGM 80 (95)
T ss_dssp HHHHHHHHHHHHHHSCCSEEEEETTEEEEECSCSHHHHHHHHGGGS
T ss_pred HHHHHHHHHHHHHCCCEEEEEEecCcEEEEEcChHHHHHHHhcCCe
Confidence 3445667788888998887775 44566777788888777754443
No 196
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=28.04 E-value=94 Score=19.81 Aligned_cols=41 Identities=15% Similarity=0.194 Sum_probs=30.9
Q ss_pred chHHHHHHHHhhCCeEEEEcCC---------cCEEEecCHHHHHHHHHHc
Q 040924 31 PHVLFWELSKKYGPLMSLRLGF---------SPSLVVSSAKMAKEILKTH 71 (208)
Q Consensus 31 ~~~~~~~~~~~yG~v~~~~~~~---------~~~v~i~dp~~~~~i~~~~ 71 (208)
....+.+++..||+|..+.+.. .-.|...+++.+..++..+
T Consensus 100 t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~ 149 (167)
T 2cjk_A 100 RPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQNK 149 (167)
T ss_dssp CHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHHCS
T ss_pred CHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHhCC
Confidence 4567888999999988776542 2357778999999998643
No 197
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=27.96 E-value=79 Score=18.96 Aligned_cols=39 Identities=18% Similarity=0.088 Sum_probs=28.9
Q ss_pred hHHHHHHHHhhCCeEEEEcC-----CcCEEEecCHHHHHHHHHH
Q 040924 32 HVLFWELSKKYGPLMSLRLG-----FSPSLVVSSAKMAKEILKT 70 (208)
Q Consensus 32 ~~~~~~~~~~yG~v~~~~~~-----~~~~v~i~dp~~~~~i~~~ 70 (208)
.+.+.+.+.+||+|..+.+. |.-.|...+++.+...+..
T Consensus 40 e~~l~~~f~~~G~v~~v~i~~~~~~G~afV~f~~~~~A~~Ai~~ 83 (112)
T 2dit_A 40 REDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQT 83 (112)
T ss_dssp HHHHHHHGGGTSCCSEEEEETTCTTCEEEEECSCHHHHHHHHHH
T ss_pred HHHHHHHHHccCCEeEEEEecCCCCEEEEEEECCHHHHHHHHHH
Confidence 36788888999998777542 3346777889988888854
No 198
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=27.66 E-value=95 Score=18.05 Aligned_cols=49 Identities=4% Similarity=0.025 Sum_probs=35.0
Q ss_pred cccccccCCCCCchHHHHHHHHhhCCeEEEEcC-------CcCEEEecCHHHHHHHHHH
Q 040924 19 FIGTLHQLDVSKPHVLFWELSKKYGPLMSLRLG-------FSPSLVVSSAKMAKEILKT 70 (208)
Q Consensus 19 ~~g~~~~~~~~~~~~~~~~~~~~yG~v~~~~~~-------~~~~v~i~dp~~~~~i~~~ 70 (208)
++||+.. .-....+.+++.+||+|..+.+. +.-.|...+++.++.++..
T Consensus 19 ~V~nlp~---~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~ 74 (103)
T 2cq3_A 19 HVSNIPF---RFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREK 74 (103)
T ss_dssp EEESCCT---TCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHH
T ss_pred EEeCCCC---CCCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHH
Confidence 4566542 33456788999999998887653 2346777899999998863
No 199
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=27.30 E-value=98 Score=18.07 Aligned_cols=50 Identities=14% Similarity=0.109 Sum_probs=34.5
Q ss_pred cccccccCCCCCchHHHHHHHHhhCCeEEEEcCC----------cCEEEecCHHHHHHHHHHcC
Q 040924 19 FIGTLHQLDVSKPHVLFWELSKKYGPLMSLRLGF----------SPSLVVSSAKMAKEILKTHD 72 (208)
Q Consensus 19 ~~g~~~~~~~~~~~~~~~~~~~~yG~v~~~~~~~----------~~~v~i~dp~~~~~i~~~~~ 72 (208)
++||+.. .-....+.+++..|| |..+.+.. .-.|...+++.++.++..++
T Consensus 19 ~V~nlp~---~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g 78 (104)
T 1wi8_A 19 FLGNLPY---DVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNE 78 (104)
T ss_dssp EEESCCS---SCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHHGGGT
T ss_pred EEeCCCC---cCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHHhcCC
Confidence 4566542 344567888999999 88887531 23577889999999983333
No 200
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=27.01 E-value=35 Score=20.06 Aligned_cols=48 Identities=10% Similarity=0.176 Sum_probs=32.7
Q ss_pred cccccccCCCCCchHHHHHHHHhhCCeEEEEcC--------CcCEEEecCHHHHHHHHH
Q 040924 19 FIGTLHQLDVSKPHVLFWELSKKYGPLMSLRLG--------FSPSLVVSSAKMAKEILK 69 (208)
Q Consensus 19 ~~g~~~~~~~~~~~~~~~~~~~~yG~v~~~~~~--------~~~~v~i~dp~~~~~i~~ 69 (208)
++|++.. .-....+.+++..||+|..+.+. +.-.|...+++.++.++.
T Consensus 13 ~V~nLp~---~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~ 68 (102)
T 2xs2_A 13 FVGGIDV---RMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE 68 (102)
T ss_dssp EEECCCT---TCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT
T ss_pred EEeCCCC---CCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh
Confidence 3556542 33456788899999998877652 223566778888888875
No 201
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=26.68 E-value=1.6e+02 Score=20.27 Aligned_cols=56 Identities=9% Similarity=0.137 Sum_probs=38.7
Q ss_pred cccccccCCCCCchHHHHHHHHhhCCeEEEEcC----CcCEEEecCHHHHHHHHH-HcCccCC
Q 040924 19 FIGTLHQLDVSKPHVLFWELSKKYGPLMSLRLG----FSPSLVVSSAKMAKEILK-THDLQFC 76 (208)
Q Consensus 19 ~~g~~~~~~~~~~~~~~~~~~~~yG~v~~~~~~----~~~~v~i~dp~~~~~i~~-~~~~~~~ 76 (208)
++||+..- .-....+.+++.+||+|..+.+. +.-.|...+++.++.++. .++..+.
T Consensus 38 ~V~nLp~~--~~te~~L~~~F~~~G~i~~v~i~~~~~g~afV~F~~~~~A~~Ai~~l~g~~~~ 98 (229)
T 2adc_A 38 LVSNLNPE--RVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLH 98 (229)
T ss_dssp EEESCCTT--TCCHHHHHHHHHHHTCEEEEEECCTTSCCEEEEESCHHHHHHHHHHHTTCBCS
T ss_pred EEeCCCcc--cCCHHHHHHHHHhCCCeEEEEEEECCCCEEEEEECCHHHHHHHHHHhCCCeEC
Confidence 35665430 23457788899999999888764 345688889999999985 3444443
No 202
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=26.67 E-value=1e+02 Score=22.16 Aligned_cols=55 Identities=11% Similarity=0.135 Sum_probs=38.1
Q ss_pred cccccccCCCCCchHHHHHHHHhhCCeEEEEcC-------CcCEEEecCHHHHHHHHHHcCccCC
Q 040924 19 FIGTLHQLDVSKPHVLFWELSKKYGPLMSLRLG-------FSPSLVVSSAKMAKEILKTHDLQFC 76 (208)
Q Consensus 19 ~~g~~~~~~~~~~~~~~~~~~~~yG~v~~~~~~-------~~~~v~i~dp~~~~~i~~~~~~~~~ 76 (208)
++||+.. .--...+.+++..||+|..+.+. +.-.|...+++.+...+..++..+.
T Consensus 45 ~V~nLp~---~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~~~~~~~ 106 (292)
T 2ghp_A 45 LVKNLPK---SYNQNKVYKYFKHCGPIIHVDVADSLKKNFRFARIEFARYDGALAAITKTHKVVG 106 (292)
T ss_dssp EEEEECT---TCCHHHHHHHHGGGSCEEEEEEEECTTSSSEEEEEEESSHHHHHHHHTTTTCEET
T ss_pred EEeCCCC---CCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEEECCHHHHHHHHHhCCcEeC
Confidence 4566542 33456788999999998877642 2346778899999999954444443
No 203
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=26.55 E-value=86 Score=17.62 Aligned_cols=39 Identities=13% Similarity=0.209 Sum_probs=27.3
Q ss_pred chHHHHHHHHhhCCeEEEEcCC---------cCEEEecCHHHHHHHHHH
Q 040924 31 PHVLFWELSKKYGPLMSLRLGF---------SPSLVVSSAKMAKEILKT 70 (208)
Q Consensus 31 ~~~~~~~~~~~yG~v~~~~~~~---------~~~v~i~dp~~~~~i~~~ 70 (208)
....+.+++..||+|..+.+.. .-.|...+++ +...+..
T Consensus 14 t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~ 61 (90)
T 2ki2_A 14 TSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAK 61 (90)
T ss_dssp SHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHT
T ss_pred CHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHH
Confidence 4566778888999987776532 2356778888 7777753
No 204
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.12 E-value=96 Score=17.58 Aligned_cols=50 Identities=12% Similarity=0.212 Sum_probs=35.7
Q ss_pred ccccccccCCCCCchHHHHHHHHhhCCeEEEEcCC---------cCEEEecCHHHHHHHHHH
Q 040924 18 PFIGTLHQLDVSKPHVLFWELSKKYGPLMSLRLGF---------SPSLVVSSAKMAKEILKT 70 (208)
Q Consensus 18 p~~g~~~~~~~~~~~~~~~~~~~~yG~v~~~~~~~---------~~~v~i~dp~~~~~i~~~ 70 (208)
=+++++.. .-....+.+++.+||+|..+.+.. .-.|...+++.++.++..
T Consensus 19 l~V~nlp~---~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~ 77 (94)
T 2e5h_A 19 VYVSNLPF---SLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRA 77 (94)
T ss_dssp EEEESCCT---TSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHH
T ss_pred EEEECCCC---CCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHH
Confidence 34666642 344567889999999998887632 236778899999998853
No 205
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=26.01 E-value=1.1e+02 Score=18.07 Aligned_cols=50 Identities=18% Similarity=0.228 Sum_probs=35.9
Q ss_pred ccccccccCCCCCchHHHHHHHHhhCCeEEEEcCC---------cCEEEecCHHHHHHHHHH
Q 040924 18 PFIGTLHQLDVSKPHVLFWELSKKYGPLMSLRLGF---------SPSLVVSSAKMAKEILKT 70 (208)
Q Consensus 18 p~~g~~~~~~~~~~~~~~~~~~~~yG~v~~~~~~~---------~~~v~i~dp~~~~~i~~~ 70 (208)
-++||+.. .-....+.+++..||+|..+.+.. .-.|...+++.+..++..
T Consensus 18 l~V~nLp~---~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~ 76 (111)
T 1x4h_A 18 VFIRNLSF---DSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAA 76 (111)
T ss_dssp EEEESCCT---TCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHH
T ss_pred EEEECCCC---CCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHH
Confidence 35666643 344567888999999998887641 235777899999999864
No 206
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=25.79 E-value=1.2e+02 Score=18.47 Aligned_cols=40 Identities=15% Similarity=0.114 Sum_probs=30.2
Q ss_pred CchHHHHHHHHhhCCeEEEEcC--------CcCEEEecCHHHHHHHHH
Q 040924 30 KPHVLFWELSKKYGPLMSLRLG--------FSPSLVVSSAKMAKEILK 69 (208)
Q Consensus 30 ~~~~~~~~~~~~yG~v~~~~~~--------~~~~v~i~dp~~~~~i~~ 69 (208)
-....+.+++.+||+|..+.+. +.-.|...+.+.++.++.
T Consensus 47 ~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~ 94 (124)
T 2kt5_A 47 VSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMK 94 (124)
T ss_dssp CCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHH
T ss_pred CCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHH
Confidence 3456788999999998777652 234677789999999886
No 207
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=25.68 E-value=1.2e+02 Score=19.41 Aligned_cols=56 Identities=5% Similarity=0.048 Sum_probs=36.4
Q ss_pred cccccccCCCCCchHHHHHHHHhhCCeEEEEcC--------CcCEEEecCHHHHHHHHHHcCccCCCC
Q 040924 19 FIGTLHQLDVSKPHVLFWELSKKYGPLMSLRLG--------FSPSLVVSSAKMAKEILKTHDLQFCSR 78 (208)
Q Consensus 19 ~~g~~~~~~~~~~~~~~~~~~~~yG~v~~~~~~--------~~~~v~i~dp~~~~~i~~~~~~~~~~~ 78 (208)
+++|+. ..-..+.+.++++.|| +..+.+. +.-.|...+++.++..+..+...+..+
T Consensus 50 fV~nLp---~~~te~dL~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al~~~g~~l~gR 113 (139)
T 2hgn_A 50 HMRGLP---YKATENDIYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRANMQHR 113 (139)
T ss_dssp ECCSCC---TTCCHHHHHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHTTCCSCSSSSC
T ss_pred EEeCCC---CCCCHHHHHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHHhhCCCEECCE
Confidence 345543 2345678889999999 4466653 235688889999999984444344433
No 208
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.49 E-value=1e+02 Score=17.61 Aligned_cols=49 Identities=12% Similarity=0.215 Sum_probs=33.4
Q ss_pred cccccccCCCCCchHHHHHHHHhhCCeEEEEcCC----cCEEEecCHHHHHHHHHH
Q 040924 19 FIGTLHQLDVSKPHVLFWELSKKYGPLMSLRLGF----SPSLVVSSAKMAKEILKT 70 (208)
Q Consensus 19 ~~g~~~~~~~~~~~~~~~~~~~~yG~v~~~~~~~----~~~v~i~dp~~~~~i~~~ 70 (208)
++||+.. .-....+.+++..||+|..+..-. .-.|...+++.++.++..
T Consensus 12 ~V~nl~~---~~t~~~l~~~F~~~G~v~~v~~~~~~g~~afV~f~~~~~a~~ai~l 64 (94)
T 2e5g_A 12 FVSGFPR---GVDSAQLSEYFLAFGPVASVVMDKDKGVFAIVEMGDVGAREAVLSQ 64 (94)
T ss_dssp EEECCCT---TCCHHHHHHHGGGTSCEEEEEECSSSCCEEEEEESSHHHHHHHHTC
T ss_pred EEECCCC---CCCHHHHHHHHHhcCCeEEEEEcCCCCcEEEEEECCHHHHHHHHhc
Confidence 3566542 344577889999999988763322 234666899999999863
No 209
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=25.45 E-value=97 Score=18.44 Aligned_cols=49 Identities=16% Similarity=0.192 Sum_probs=33.8
Q ss_pred cccccccCCCCCchHHHHHHHHhhCCeEEEEcCC--------cCEEEecCHHHHHHHHHH
Q 040924 19 FIGTLHQLDVSKPHVLFWELSKKYGPLMSLRLGF--------SPSLVVSSAKMAKEILKT 70 (208)
Q Consensus 19 ~~g~~~~~~~~~~~~~~~~~~~~yG~v~~~~~~~--------~~~v~i~dp~~~~~i~~~ 70 (208)
++|++.. .-....+.+++..||.|..+.+.. .-.|...+++.+..++..
T Consensus 29 ~V~nlp~---~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~ 85 (114)
T 1x5o_A 29 YISNLPL---SMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGH 85 (114)
T ss_dssp EEESCCT---TCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHH
T ss_pred EEeCCCC---CCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHH
Confidence 4566542 334567888899999988776521 235677899999998863
No 210
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=25.42 E-value=1.1e+02 Score=18.14 Aligned_cols=44 Identities=11% Similarity=0.108 Sum_probs=28.9
Q ss_pred HHHHHHH-HhhCCeEEEEcCC--------cCEEEecCHHHHHHHHHH-cCccCC
Q 040924 33 VLFWELS-KKYGPLMSLRLGF--------SPSLVVSSAKMAKEILKT-HDLQFC 76 (208)
Q Consensus 33 ~~~~~~~-~~yG~v~~~~~~~--------~~~v~i~dp~~~~~i~~~-~~~~~~ 76 (208)
..+.+.+ .+||+|..+.+.. .-.|...+++.+...... ++..+.
T Consensus 41 edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~ 94 (104)
T 1jmt_A 41 EEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFN 94 (104)
T ss_dssp HHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEET
T ss_pred HHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEEC
Confidence 3455566 8999998887642 234667788888888753 343343
No 211
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=25.32 E-value=93 Score=17.16 Aligned_cols=49 Identities=10% Similarity=0.213 Sum_probs=34.7
Q ss_pred cccccccCCCCCchHHHHHHHHhhCCeEEEEcCC---------cCEEEecCHHHHHHHHHH
Q 040924 19 FIGTLHQLDVSKPHVLFWELSKKYGPLMSLRLGF---------SPSLVVSSAKMAKEILKT 70 (208)
Q Consensus 19 ~~g~~~~~~~~~~~~~~~~~~~~yG~v~~~~~~~---------~~~v~i~dp~~~~~i~~~ 70 (208)
++||+.. .-....+.+++.+||+|..+.+.. .-.|...+++.++.++..
T Consensus 11 ~V~nl~~---~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~ 68 (85)
T 3mdf_A 11 YVGGLAE---EVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDN 68 (85)
T ss_dssp EEECCCT---TCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHH
T ss_pred EEECCCC---CCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHH
Confidence 4566542 334577889999999998886532 236777899999998843
No 212
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=24.23 E-value=1.1e+02 Score=17.62 Aligned_cols=49 Identities=14% Similarity=0.120 Sum_probs=33.1
Q ss_pred cccccccCCCCCchHHHHHHHHhhCCeEE--------EEcC---------CcCEEEecCHHHHHHHHHH
Q 040924 19 FIGTLHQLDVSKPHVLFWELSKKYGPLMS--------LRLG---------FSPSLVVSSAKMAKEILKT 70 (208)
Q Consensus 19 ~~g~~~~~~~~~~~~~~~~~~~~yG~v~~--------~~~~---------~~~~v~i~dp~~~~~i~~~ 70 (208)
++||+.. .-....+.+++.+||.|.. +.+. |.-.|...+++.++.++..
T Consensus 17 ~V~nLp~---~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~ 82 (99)
T 2la6_A 17 FVQGLGE---NVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDW 82 (99)
T ss_dssp EEECCCS---SCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHH
T ss_pred EEeCCCC---CCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHH
Confidence 4566542 3446778899999998765 4431 1235777899999988853
No 213
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=24.14 E-value=1.4e+02 Score=18.67 Aligned_cols=48 Identities=8% Similarity=0.007 Sum_probs=32.6
Q ss_pred ccccccCCCCCchHHHHHHHHhhCCeEEEEcC---C-cCEEEecCHHHHHHHHHH
Q 040924 20 IGTLHQLDVSKPHVLFWELSKKYGPLMSLRLG---F-SPSLVVSSAKMAKEILKT 70 (208)
Q Consensus 20 ~g~~~~~~~~~~~~~~~~~~~~yG~v~~~~~~---~-~~~v~i~dp~~~~~i~~~ 70 (208)
+||+.. .--...+.+++.+||.|..+.+. + .-.|...|++.+......
T Consensus 30 V~NL~~---~vt~~~L~~~Fs~yG~V~~v~i~~~~Gf~aFVef~~~~~A~~A~~~ 81 (124)
T 2e5i_A 30 IQNPLY---PITVDVLYTVCNPVGKVQRIVIFKRNGIQAMVEFESVLCAQKAKAA 81 (124)
T ss_dssp EESCCS---CCCHHHHHHHHTTTSCEEEEEEEESSSEEEEEEESSHHHHHHHHHH
T ss_pred EcCcCC---CCCHHHHHHHHHhcCCEEEEEEEeCCCCEEEEEECCHHHHHHHHHH
Confidence 456432 23456789999999998776542 3 256777888888777653
No 214
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=22.16 E-value=1.3e+02 Score=17.53 Aligned_cols=55 Identities=20% Similarity=0.335 Sum_probs=38.1
Q ss_pred cccccccCCCCCchHHHHHHHHhhCCeEEEEcCC---------cCEEEecCHHHHHHHHHH-cCccCC
Q 040924 19 FIGTLHQLDVSKPHVLFWELSKKYGPLMSLRLGF---------SPSLVVSSAKMAKEILKT-HDLQFC 76 (208)
Q Consensus 19 ~~g~~~~~~~~~~~~~~~~~~~~yG~v~~~~~~~---------~~~v~i~dp~~~~~i~~~-~~~~~~ 76 (208)
++|++.. .-....+.+++.+||+|..+.+.. .-.|...+++.++.++.. ++..+.
T Consensus 19 ~V~nlp~---~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 83 (105)
T 1x5u_A 19 YVGGLDE---KVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLY 83 (105)
T ss_dssp EEECCCT---TCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCS
T ss_pred EEeCCCC---CCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeEC
Confidence 4566542 334567889999999998887633 235778899999999874 333343
No 215
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=21.95 E-value=1.3e+02 Score=17.45 Aligned_cols=50 Identities=14% Similarity=0.280 Sum_probs=35.5
Q ss_pred cccccccCCCCCchHHHHHHHHhhCCeEEEEcC-CcCEEEecCHHHHHHHHHH
Q 040924 19 FIGTLHQLDVSKPHVLFWELSKKYGPLMSLRLG-FSPSLVVSSAKMAKEILKT 70 (208)
Q Consensus 19 ~~g~~~~~~~~~~~~~~~~~~~~yG~v~~~~~~-~~~~v~i~dp~~~~~i~~~ 70 (208)
++||+.. ..-....+.+++..||.|..+.+. +.-.|...+++.+..++..
T Consensus 26 ~V~nLp~--~~~t~~~L~~~F~~~G~v~~v~i~~g~afV~f~~~~~A~~Ai~~ 76 (97)
T 2xnq_A 26 FIGNLPL--KNVSKEDLFRIFSPYGHIMQINIKNAFGFIQFDNPQSVRDAIEX 76 (97)
T ss_dssp EEESCCS--SCCCHHHHHHHHGGGSCEEEEEECSSEEEEEESSHHHHHHHHHH
T ss_pred EEeCCCc--ccCCHHHHHHHHHhcCCEEEEEEeCCEEEEEECCHHHHHHHHHH
Confidence 3566542 023456788999999999888763 3456777899999998863
No 216
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.94 E-value=85 Score=19.53 Aligned_cols=51 Identities=12% Similarity=0.151 Sum_probs=32.7
Q ss_pred cccccccCCCCCchHHHHHHHHhhCCe----EEEEc-----C---CcCEEEecCHHHHHHHHHHcC
Q 040924 19 FIGTLHQLDVSKPHVLFWELSKKYGPL----MSLRL-----G---FSPSLVVSSAKMAKEILKTHD 72 (208)
Q Consensus 19 ~~g~~~~~~~~~~~~~~~~~~~~yG~v----~~~~~-----~---~~~~v~i~dp~~~~~i~~~~~ 72 (208)
+++|+. ..--...+.+++..||+| ..+.+ + +.-.|...+++.++..+..+.
T Consensus 27 ~V~nLp---~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~~~ 89 (123)
T 2dha_A 27 RMRGLP---FTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRKHK 89 (123)
T ss_dssp EECSCC---TTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTTTT
T ss_pred EEeCCC---CCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHhCC
Confidence 345543 234567888999999975 12222 1 123677889999999996533
No 217
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.53 E-value=1.2e+02 Score=17.19 Aligned_cols=49 Identities=18% Similarity=0.160 Sum_probs=34.5
Q ss_pred ccccccccCCCCCchHHHHHHHHhhCCeEEEE-cCCc-----CEEEecCHHHHHHHHH
Q 040924 18 PFIGTLHQLDVSKPHVLFWELSKKYGPLMSLR-LGFS-----PSLVVSSAKMAKEILK 69 (208)
Q Consensus 18 p~~g~~~~~~~~~~~~~~~~~~~~yG~v~~~~-~~~~-----~~v~i~dp~~~~~i~~ 69 (208)
-++||+.. .-....+.+++..||+|..+. +... -.|...+++.+...+.
T Consensus 18 l~V~nlp~---~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~afV~f~~~~~a~~Ai~ 72 (96)
T 2e44_A 18 LQIRNIPP---HLQWEVLDSLLVQYGVVESCEQVNTDSETAVVNVTYSSKDQARQALD 72 (96)
T ss_dssp EEEEEECS---SSCHHHHHHHHHHHSCEEEEEEECCSSSSEEEEEEESSHHHHHHHHH
T ss_pred EEEEcCCC---CCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEECCHHHHHHHHH
Confidence 35677653 344667889999999988873 3321 3577789998988885
No 218
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=21.37 E-value=1.3e+02 Score=17.31 Aligned_cols=48 Identities=15% Similarity=0.083 Sum_probs=34.8
Q ss_pred cccccccCCCCCchHHHHHHHHhh--CCeEEEEcC-CcCEEEecCHHHHHHHHH
Q 040924 19 FIGTLHQLDVSKPHVLFWELSKKY--GPLMSLRLG-FSPSLVVSSAKMAKEILK 69 (208)
Q Consensus 19 ~~g~~~~~~~~~~~~~~~~~~~~y--G~v~~~~~~-~~~~v~i~dp~~~~~i~~ 69 (208)
++||+.. .-....+.+++.+| |.|..+.+. +.-.|...+++.+..++.
T Consensus 19 ~V~nLp~---~~t~~~l~~~F~~~g~g~v~~~~~~~g~afV~f~~~~~A~~A~~ 69 (99)
T 2cpd_A 19 YVRNLML---STSEEMIEKEFNNIKPGAVERVKKIRDYAFVHFSNREDAVEAMK 69 (99)
T ss_dssp EEESCCT---TCCHHHHHHHHHTTSTTCEEEEEECSSEEEEEESSHHHHHHHHH
T ss_pred EEeCCCC---CCCHHHHHHHHHhcCCcceEEEEEeCCeEEEEeCCHHHHHHHHH
Confidence 4566542 33456788999999 888887653 345677789999999986
No 219
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.12 E-value=1.2e+02 Score=17.00 Aligned_cols=50 Identities=12% Similarity=0.125 Sum_probs=36.2
Q ss_pred ccccccccCCCCCchHHHHHHHHhhCCeEEEEcCC-cCEEEecCHHHHHHHHHH
Q 040924 18 PFIGTLHQLDVSKPHVLFWELSKKYGPLMSLRLGF-SPSLVVSSAKMAKEILKT 70 (208)
Q Consensus 18 p~~g~~~~~~~~~~~~~~~~~~~~yG~v~~~~~~~-~~~v~i~dp~~~~~i~~~ 70 (208)
-++||+.. .-....+.+++.+||+|..+.+.. .-.|...+++.++.++..
T Consensus 12 l~V~nlp~---~~t~~~l~~~F~~~G~v~~~~~~~~~afV~f~~~~~a~~A~~~ 62 (90)
T 2dnp_A 12 IFVGNVSA---ACTSQELRSLFERRGRVIECDVVKDYAFVHMEKEADAKAAIAQ 62 (90)
T ss_dssp EEEESCCT---TCCHHHHHHHHHHHSCEEEEEECSSCEEEEESCHHHHHHHHHH
T ss_pred EEEeCCCC---CCCHHHHHHHHHcCCCEEEEEEECCEEEEEECCHHHHHHHHHH
Confidence 35677643 334567888999999998887643 456777899999988863
No 220
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=21.07 E-value=1.2e+02 Score=21.11 Aligned_cols=39 Identities=13% Similarity=0.130 Sum_probs=29.7
Q ss_pred chHHHHHHHHhhC--CeEEEEcCC---------cCEEEecCHHHHHHHHH
Q 040924 31 PHVLFWELSKKYG--PLMSLRLGF---------SPSLVVSSAKMAKEILK 69 (208)
Q Consensus 31 ~~~~~~~~~~~yG--~v~~~~~~~---------~~~v~i~dp~~~~~i~~ 69 (208)
-...+.+++.+|| .|..+.+.. .-+|...+.+.++.++.
T Consensus 81 te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~ 130 (229)
T 3q2s_C 81 TDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMD 130 (229)
T ss_dssp CHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHT
T ss_pred CHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHH
Confidence 3567889999999 888776421 13677889999999885
No 221
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=20.90 E-value=1.6e+02 Score=18.69 Aligned_cols=41 Identities=12% Similarity=0.131 Sum_probs=30.7
Q ss_pred CchHHHHHHHHhhCCeEEEEcCCc--------CEEEecCHHHHHHHHHH
Q 040924 30 KPHVLFWELSKKYGPLMSLRLGFS--------PSLVVSSAKMAKEILKT 70 (208)
Q Consensus 30 ~~~~~~~~~~~~yG~v~~~~~~~~--------~~v~i~dp~~~~~i~~~ 70 (208)
-....+.+++..||+|..+.+... -.|...+++.+..++..
T Consensus 107 ~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~ 155 (175)
T 3nmr_A 107 CTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKA 155 (175)
T ss_dssp CCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHH
T ss_pred CCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHH
Confidence 345778899999999887765221 36777899999998854
No 222
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.48 E-value=1.6e+02 Score=18.00 Aligned_cols=45 Identities=22% Similarity=0.305 Sum_probs=30.2
Q ss_pred hHHHHHHHHh---h--CCeEEEE-cCCcCEEEecCHHHHHHHHHHcCccCC
Q 040924 32 HVLFWELSKK---Y--GPLMSLR-LGFSPSLVVSSAKMAKEILKTHDLQFC 76 (208)
Q Consensus 32 ~~~~~~~~~~---y--G~v~~~~-~~~~~~v~i~dp~~~~~i~~~~~~~~~ 76 (208)
.+.+.-+++. . |+|-.+. .++.-+|...|++.++.|+.+....+.
T Consensus 22 ~e~L~LYFEn~rrsGGG~V~~v~~~~~~AvItF~d~~va~rVL~k~~H~L~ 72 (104)
T 2dhx_A 22 DELLTLYFENRRRSGGGPVLSWQRLGCGGVLTFREPADAERVLAQADHELH 72 (104)
T ss_dssp HHHHHHHHHCTTTTCCCCEEEEEEETTEEEEEESSHHHHHHHHTCSCCBSS
T ss_pred hhHheEEEeCCCcCCCceeeEEEEcCCcEEEEEcChHHHHHHhcCCcceec
Confidence 4455555554 3 3677774 455667888999999999976444443
No 223
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=20.37 E-value=1.7e+02 Score=18.43 Aligned_cols=49 Identities=16% Similarity=0.231 Sum_probs=35.4
Q ss_pred cccccccCCCCCchHHHHHHHHhhCCeEEEEcC----CcCEEEecCHHHHHHHHHH
Q 040924 19 FIGTLHQLDVSKPHVLFWELSKKYGPLMSLRLG----FSPSLVVSSAKMAKEILKT 70 (208)
Q Consensus 19 ~~g~~~~~~~~~~~~~~~~~~~~yG~v~~~~~~----~~~~v~i~dp~~~~~i~~~ 70 (208)
++||+.. .-....+.+++..||+|..+.+. +.-.|...+++.+...+..
T Consensus 77 ~V~nl~~---~~t~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~ 129 (150)
T 2i2y_A 77 YVGNLGN---NGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRE 129 (150)
T ss_dssp EEESCCS---CCSCHHHHHHHHHHSCEEEEEECSSSCSEEEEEESSHHHHHHHHHH
T ss_pred EEeCCCC---CCCHHHHHHHHHhhCCEEEEEEeeCCCcEEEEEECCHHHHHHHHHH
Confidence 4566643 23446688899999999888764 3456778899999998863
Done!