Query 040925
Match_columns 833
No_of_seqs 828 out of 5671
Neff 9.9
Searched_HMMs 29240
Date Mon Mar 25 21:27:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040925.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040925hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 6.9E-59 2.4E-63 555.5 38.2 460 1-469 202-753 (768)
2 3rgz_A Protein brassinosteroid 100.0 4.8E-55 1.6E-59 522.3 36.5 443 1-457 180-721 (768)
3 3t6q_A CD180 antigen; protein- 100.0 1.9E-54 6.6E-59 505.9 36.5 451 1-456 35-564 (606)
4 3vq2_A TLR4, TOLL-like recepto 100.0 1.2E-52 4.1E-57 490.7 33.4 446 1-457 34-563 (606)
5 3j0a_A TOLL-like receptor 5; m 100.0 6.6E-53 2.3E-57 509.0 31.8 449 1-456 26-564 (844)
6 1ziw_A TOLL-like receptor 3; i 100.0 3.4E-52 1.2E-56 493.5 36.2 454 1-456 27-626 (680)
7 3t6q_A CD180 antigen; protein- 100.0 7.4E-52 2.5E-56 484.0 37.3 424 1-435 59-566 (606)
8 1ziw_A TOLL-like receptor 3; i 100.0 6.3E-50 2.1E-54 474.1 40.8 432 1-434 75-627 (680)
9 3vq2_A TLR4, TOLL-like recepto 100.0 7.4E-50 2.5E-54 467.0 33.7 424 1-435 58-564 (606)
10 2z63_A TOLL-like receptor 4, v 100.0 1.2E-49 4.1E-54 462.1 32.1 439 1-457 30-536 (570)
11 3j0a_A TOLL-like receptor 5; m 100.0 1.8E-49 6.2E-54 479.0 27.6 428 1-435 50-566 (844)
12 4asz_A BDNF/NT-3 growth factor 100.0 6.2E-51 2.1E-55 424.7 11.2 265 531-827 13-290 (299)
13 3omv_A RAF proto-oncogene seri 100.0 2.9E-50 9.8E-55 419.2 15.5 265 530-830 35-304 (307)
14 4aoj_A High affinity nerve gro 100.0 2.5E-50 8.6E-55 426.1 15.2 265 531-827 41-320 (329)
15 4fih_A Serine/threonine-protei 100.0 2.8E-50 9.7E-55 424.2 14.6 251 531-820 74-324 (346)
16 4g3f_A NF-kappa-beta-inducing 100.0 3.9E-50 1.3E-54 422.0 14.3 261 530-828 57-318 (336)
17 4b9d_A Serine/threonine-protei 100.0 2.1E-50 7.3E-55 425.8 11.8 252 531-820 24-277 (350)
18 2z63_A TOLL-like receptor 4, v 100.0 2E-48 7E-53 451.7 28.4 444 1-457 54-561 (570)
19 4eco_A Uncharacterized protein 100.0 4.9E-49 1.7E-53 459.4 21.8 415 2-433 84-604 (636)
20 4gt4_A Tyrosine-protein kinase 100.0 1E-49 3.5E-54 417.4 13.5 262 531-824 26-304 (308)
21 2z7x_B TOLL-like receptor 1, v 100.0 2.1E-48 7.2E-53 445.8 24.9 434 2-455 3-484 (520)
22 2z81_A CD282 antigen, TOLL-lik 100.0 2.7E-48 9.3E-53 448.3 25.3 436 1-455 28-513 (549)
23 4aw0_A HPDK1, 3-phosphoinositi 100.0 6.9E-50 2.4E-54 414.7 10.2 250 531-819 32-284 (311)
24 4fie_A Serine/threonine-protei 100.0 4.1E-49 1.4E-53 425.7 15.3 251 531-820 151-401 (423)
25 3fpq_A Serine/threonine-protei 100.0 9.3E-49 3.2E-53 404.9 16.8 252 532-820 26-283 (290)
26 3hyh_A Carbon catabolite-derep 100.0 7.7E-49 2.6E-53 401.6 14.5 248 530-820 12-263 (275)
27 4ecn_A Leucine-rich repeat pro 100.0 9.7E-48 3.3E-52 454.7 23.5 435 1-453 325-865 (876)
28 3hmm_A TGF-beta receptor type- 100.0 2.6E-48 8.9E-53 408.3 15.8 272 531-827 3-298 (303)
29 2z81_A CD282 antigen, TOLL-lik 100.0 6.4E-47 2.2E-51 436.8 26.1 419 1-434 52-515 (549)
30 4ecn_A Leucine-rich repeat pro 100.0 6E-47 2E-51 447.9 23.8 417 23-454 323-842 (876)
31 4ase_A Vascular endothelial gr 100.0 2.2E-48 7.4E-53 414.5 9.1 277 521-827 54-348 (353)
32 3ubd_A Ribosomal protein S6 ki 100.0 2E-48 6.7E-53 404.2 7.8 248 531-819 24-281 (304)
33 4g8a_A TOLL-like receptor 4; l 100.0 1.5E-45 5E-50 433.7 33.3 445 1-456 54-584 (635)
34 4eco_A Uncharacterized protein 100.0 9.7E-47 3.3E-51 440.0 23.0 415 23-456 81-604 (636)
35 4g31_A Eukaryotic translation 100.0 2.6E-47 8.9E-52 398.2 15.6 265 530-820 4-280 (299)
36 2z7x_B TOLL-like receptor 1, v 100.0 2.4E-46 8.4E-51 428.7 22.9 420 1-434 23-486 (520)
37 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 3.4E-45 1.2E-49 422.6 28.1 436 2-456 34-514 (562)
38 3v47_A TOLL-like receptor 5B a 100.0 1.2E-43 4.3E-48 399.3 30.0 385 27-435 14-414 (455)
39 4b99_A Mitogen-activated prote 100.0 8.8E-45 3E-49 393.8 16.8 266 531-820 54-345 (398)
40 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 8.7E-44 3E-48 410.9 24.8 409 21-452 29-486 (562)
41 4g8a_A TOLL-like receptor 4; l 100.0 7.2E-43 2.4E-47 410.8 30.6 425 1-434 78-585 (635)
42 3v47_A TOLL-like receptor 5B a 100.0 4.6E-42 1.6E-46 386.5 30.4 383 2-409 13-412 (455)
43 4f9c_A Cell division cycle 7-r 100.0 1.3E-43 4.6E-48 380.6 14.9 204 529-761 19-248 (361)
44 3v5w_A G-protein coupled recep 100.0 1.5E-43 5.2E-48 398.7 13.0 251 530-820 188-450 (689)
45 3uto_A Twitchin; kinase, muscl 100.0 5.6E-43 1.9E-47 399.0 15.5 254 530-820 156-411 (573)
46 2id5_A Lingo-1, leucine rich r 100.0 2E-41 6.7E-46 383.4 25.9 349 75-459 15-363 (477)
47 1jl5_A Outer protein YOPM; leu 100.0 4.2E-41 1.4E-45 375.1 25.9 387 1-453 13-430 (454)
48 1o6v_A Internalin A; bacterial 100.0 9.2E-40 3.1E-44 367.9 30.7 349 21-433 44-392 (466)
49 3s95_A LIMK-1, LIM domain kina 100.0 3E-41 1E-45 359.2 17.5 272 530-830 9-286 (310)
50 1o6v_A Internalin A; bacterial 100.0 2.8E-39 9.6E-44 364.0 32.0 343 1-407 48-390 (466)
51 3fxz_A Serine/threonine-protei 100.0 5.9E-41 2E-45 353.9 16.3 252 530-820 19-270 (297)
52 2id5_A Lingo-1, leucine rich r 100.0 2E-39 6.9E-44 366.9 27.7 347 3-434 15-361 (477)
53 3uim_A Brassinosteroid insensi 100.0 1.7E-40 5.6E-45 356.2 16.3 283 517-824 16-309 (326)
54 2qkw_B Protein kinase; three-h 100.0 2E-40 7E-45 354.5 16.5 279 521-826 29-315 (321)
55 3ugc_A Tyrosine-protein kinase 100.0 4.3E-41 1.5E-45 355.3 9.2 274 530-829 9-294 (295)
56 3fe3_A MAP/microtubule affinit 100.0 1.7E-40 5.8E-45 354.4 13.9 250 529-820 13-265 (328)
57 3bz5_A Internalin-J, INLJ; leu 100.0 3.5E-39 1.2E-43 359.9 25.0 357 10-435 29-393 (457)
58 1jl5_A Outer protein YOPM; leu 100.0 4.1E-39 1.4E-43 359.0 25.2 375 16-452 5-409 (454)
59 3zgw_A Maternal embryonic leuc 100.0 1.9E-40 6.6E-45 355.8 13.6 252 529-820 8-261 (347)
60 2c30_A Serine/threonine-protei 100.0 1E-39 3.5E-44 348.3 18.2 263 519-820 23-295 (321)
61 3p86_A Serine/threonine-protei 100.0 5.4E-40 1.8E-44 348.3 14.9 266 525-828 31-300 (309)
62 2yab_A Death-associated protei 100.0 1.3E-39 4.6E-44 351.6 17.3 253 530-820 11-273 (361)
63 3soc_A Activin receptor type-2 100.0 5.1E-40 1.7E-44 351.2 13.9 271 530-827 23-319 (322)
64 3kul_A Ephrin type-A receptor 100.0 3.2E-40 1.1E-44 353.0 12.1 264 530-829 48-316 (325)
65 3q4u_A Activin receptor type-1 100.0 1.1E-39 3.7E-44 345.7 16.1 265 530-824 7-300 (301)
66 1o6l_A RAC-beta serine/threoni 100.0 1.3E-39 4.3E-44 348.5 16.3 250 530-820 4-261 (337)
67 4eqm_A Protein kinase; transfe 100.0 7E-40 2.4E-44 345.3 13.9 262 531-827 11-276 (294)
68 4dc2_A Protein kinase C IOTA t 100.0 1.1E-39 3.8E-44 355.1 15.4 247 530-814 51-307 (396)
69 2psq_A Fibroblast growth facto 100.0 1.1E-39 3.8E-44 354.8 15.0 267 530-828 80-366 (370)
70 3h4j_B AMPK kdaid, SNF1-like p 100.0 1.4E-39 4.7E-44 347.8 14.8 248 530-820 8-259 (336)
71 4hcu_A Tyrosine-protein kinase 100.0 1.1E-39 3.7E-44 339.5 13.6 258 530-827 9-267 (269)
72 3cbl_A C-FES, proto-oncogene t 100.0 3E-40 1E-44 360.7 9.6 262 529-827 112-375 (377)
73 3tki_A Serine/threonine-protei 100.0 1.7E-39 5.6E-44 346.9 14.9 255 530-820 6-262 (323)
74 1tki_A Titin; serine kinase, m 100.0 1.9E-39 6.6E-44 345.8 15.4 253 530-820 4-258 (321)
75 2y0a_A Death-associated protei 100.0 3.6E-39 1.2E-43 344.9 16.9 253 530-820 10-272 (326)
76 3sxs_A Cytoplasmic tyrosine-pr 100.0 1.5E-39 5E-44 338.4 13.1 258 530-827 7-265 (268)
77 2izr_A Casein kinase I isoform 100.0 3.3E-39 1.1E-43 346.5 15.9 268 531-827 9-282 (330)
78 1csn_A Casein kinase-1; phosph 100.0 6.2E-39 2.1E-43 339.4 17.1 272 530-829 9-286 (298)
79 3soa_A Calcium/calmodulin-depe 100.0 4.7E-39 1.6E-43 356.5 16.7 255 529-820 9-268 (444)
80 4fr4_A YANK1, serine/threonine 100.0 3.5E-39 1.2E-43 350.0 15.0 251 530-819 14-271 (384)
81 3bz5_A Internalin-J, INLJ; leu 100.0 6.9E-38 2.4E-42 349.4 25.8 346 1-414 44-396 (457)
82 4euu_A Serine/threonine-protei 100.0 1.1E-38 3.7E-43 340.8 18.2 266 531-824 9-307 (319)
83 3a8x_A Protein kinase C IOTA t 100.0 3.5E-39 1.2E-43 346.8 14.4 247 530-814 8-264 (345)
84 4f0f_A Serine/threonine-protei 100.0 6.1E-39 2.1E-43 337.4 15.9 253 531-824 19-287 (287)
85 2nru_A Interleukin-1 receptor- 100.0 2.2E-38 7.7E-43 336.5 20.3 280 517-826 11-306 (307)
86 3vhe_A Vascular endothelial gr 100.0 9.8E-40 3.4E-44 355.3 10.0 278 521-828 12-357 (359)
87 3txo_A PKC-L, NPKC-ETA, protei 100.0 1.3E-39 4.5E-44 350.8 10.6 252 528-820 20-281 (353)
88 3qd2_B Eukaryotic translation 100.0 5.1E-39 1.7E-43 345.7 15.1 266 529-820 4-326 (332)
89 2bdw_A Hypothetical protein K1 100.0 4.9E-39 1.7E-43 348.4 15.0 254 529-820 27-285 (362)
90 1kob_A Twitchin; kinase, intra 100.0 5.7E-39 1.9E-43 349.8 15.5 254 530-820 50-305 (387)
91 3gen_A Tyrosine-protein kinase 100.0 4.9E-39 1.7E-43 337.4 14.3 260 528-827 21-281 (283)
92 2qol_A Ephrin receptor; recept 100.0 1.7E-39 5.8E-44 353.5 11.2 262 530-827 44-310 (373)
93 3g2f_A Bone morphogenetic prot 100.0 8.5E-39 2.9E-43 344.5 16.5 281 529-831 11-323 (336)
94 2zv2_A Calcium/calmodulin-depe 100.0 7.3E-39 2.5E-43 338.6 15.4 253 530-820 12-293 (298)
95 3lb7_A RAF proto-oncogene seri 100.0 8.8E-39 3E-43 338.8 15.5 265 530-830 35-304 (307)
96 1fot_A TPK1 delta, CAMP-depend 100.0 7.4E-39 2.5E-43 340.2 14.8 247 530-820 5-259 (318)
97 4aw2_A Serine/threonine-protei 100.0 1.8E-39 6.3E-44 358.2 10.3 265 522-820 65-339 (437)
98 3c0i_A Peripheral plasma membr 100.0 5.1E-39 1.8E-43 347.3 13.5 257 530-820 23-287 (351)
99 1xjd_A Protein kinase C, theta 100.0 2.6E-39 9E-44 347.0 11.0 252 527-819 13-269 (345)
100 3gxj_A TGF-beta receptor type- 100.0 1E-39 3.5E-44 346.3 7.4 279 530-828 2-299 (303)
101 3op5_A Serine/threonine-protei 100.0 6.9E-39 2.3E-43 348.7 13.4 275 529-828 33-331 (364)
102 3qup_A Tyrosine-protein kinase 100.0 4.3E-39 1.5E-43 344.7 11.5 273 528-827 20-299 (323)
103 3kfa_A Tyrosine-protein kinase 100.0 2.1E-39 7.3E-44 341.1 8.9 262 528-827 10-272 (288)
104 3poz_A Epidermal growth factor 100.0 4.2E-39 1.4E-43 344.8 11.3 259 531-827 15-279 (327)
105 3l9p_A Anaplastic lymphoma kin 100.0 2.1E-39 7.3E-44 352.4 8.9 266 530-827 70-346 (367)
106 3o6n_A APL1; leucine-rich repe 100.0 2E-37 6.7E-42 340.9 24.6 336 22-457 44-379 (390)
107 3o0g_A Cell division protein k 100.0 1.1E-38 3.6E-43 336.3 13.9 258 531-820 2-283 (292)
108 1rdq_E PKA C-alpha, CAMP-depen 100.0 1E-38 3.6E-43 343.6 14.1 247 530-820 40-294 (350)
109 1opk_A P150, C-ABL, proto-onco 100.0 4.1E-39 1.4E-43 363.8 11.3 259 530-826 219-478 (495)
110 3gni_B Strad alpha; kinase fol 100.0 1.9E-38 6.6E-43 348.6 16.4 267 529-820 23-334 (389)
111 1mp8_A Focal adhesion kinase 1 100.0 5.7E-39 2E-43 336.3 11.3 262 529-829 13-279 (281)
112 1luf_A Muscle-specific tyrosin 100.0 4.6E-39 1.6E-43 347.7 11.0 272 527-830 43-339 (343)
113 1k9a_A Carboxyl-terminal SRC k 100.0 1.8E-38 6.2E-43 354.6 15.8 255 529-827 191-446 (450)
114 4fvq_A Tyrosine-protein kinase 100.0 2.4E-39 8.2E-44 340.9 8.1 253 530-827 7-276 (289)
115 2ivs_A Proto-oncogene tyrosine 100.0 1.1E-38 3.6E-43 340.3 13.0 267 529-827 21-312 (314)
116 3tt0_A Basic fibroblast growth 100.0 1.5E-38 5.3E-43 348.0 14.5 269 530-830 68-356 (382)
117 2i0e_A Protein kinase C-beta I 100.0 1.4E-38 4.7E-43 342.5 13.9 251 529-820 18-277 (353)
118 2w4o_A Calcium/calmodulin-depe 100.0 2.4E-38 8.1E-43 341.6 15.7 253 529-820 51-306 (349)
119 3c1x_A Hepatocyte growth facto 100.0 7.5E-39 2.6E-43 347.9 11.5 266 532-831 90-360 (373)
120 3dtc_A Mitogen-activated prote 100.0 9.7E-39 3.3E-43 332.8 11.9 251 530-824 6-271 (271)
121 4hgt_A Casein kinase I isoform 100.0 3.4E-38 1.2E-42 333.4 16.2 273 529-828 7-282 (296)
122 3ork_A Serine/threonine protei 100.0 5.3E-39 1.8E-43 341.7 10.0 266 530-825 11-280 (311)
123 3f66_A Hepatocyte growth facto 100.0 1.8E-38 6.2E-43 335.7 14.0 268 530-831 24-296 (298)
124 3uc3_A Serine/threonine-protei 100.0 2.5E-38 8.6E-43 342.9 15.4 252 530-820 19-275 (361)
125 3v8s_A RHO-associated protein 100.0 4.4E-39 1.5E-43 352.5 9.5 261 523-820 61-330 (410)
126 3niz_A Rhodanese family protei 100.0 3.4E-38 1.2E-42 335.1 16.0 258 530-820 20-301 (311)
127 3lxl_A Tyrosine-protein kinase 100.0 6.9E-39 2.4E-43 343.6 10.6 270 531-828 23-305 (327)
128 3f3z_A Calcium/calmodulin-depe 100.0 2.9E-38 1E-42 330.3 15.0 252 530-820 8-262 (277)
129 4e5w_A Tyrosine-protein kinase 100.0 1.3E-38 4.4E-43 337.6 12.5 268 531-825 21-301 (302)
130 3fdn_A Serine/threonine-protei 100.0 1.5E-38 5E-43 332.9 12.6 249 529-820 7-258 (279)
131 2w1i_A JAK2; chromosomal rearr 100.0 1.5E-38 5.1E-43 340.7 12.9 274 530-830 40-326 (326)
132 1qcf_A Haematopoetic cell kina 100.0 9.2E-39 3.1E-43 357.6 11.7 261 527-827 184-445 (454)
133 2a2a_A Death-associated protei 100.0 4.6E-38 1.6E-42 336.1 16.5 253 530-820 11-273 (321)
134 3uzp_A CKI-delta, CKID, casein 100.0 6E-38 2.1E-42 331.4 17.3 272 530-828 8-282 (296)
135 3g33_A Cell division protein k 100.0 2.2E-38 7.7E-43 336.6 14.0 265 529-820 7-297 (308)
136 3dls_A PAS domain-containing s 100.0 1.6E-38 5.4E-43 341.0 12.9 243 529-820 22-275 (335)
137 3brb_A Proto-oncogene tyrosine 100.0 1.9E-38 6.4E-43 338.1 13.4 279 524-829 27-311 (313)
138 2y94_A 5'-AMP-activated protei 100.0 2.5E-38 8.6E-43 352.7 14.9 249 530-820 15-267 (476)
139 2eva_A TAK1 kinase - TAB1 chim 100.0 3.6E-38 1.2E-42 334.4 15.4 260 530-830 7-267 (307)
140 3oja_B Anopheles plasmodium-re 100.0 2.3E-37 7.8E-42 359.0 23.5 338 46-459 50-387 (597)
141 3kex_A Receptor tyrosine-prote 100.0 7.8E-39 2.7E-43 342.6 10.3 259 531-827 13-277 (325)
142 2x4f_A Myosin light chain kina 100.0 2.5E-38 8.4E-43 344.1 14.3 249 535-820 93-343 (373)
143 2pmi_A Negative RE, cyclin-dep 100.0 3.5E-38 1.2E-42 336.1 15.2 264 530-820 4-294 (317)
144 3o6n_A APL1; leucine-rich repe 100.0 7.1E-37 2.4E-41 336.4 25.8 308 1-383 47-354 (390)
145 4eut_A Serine/threonine-protei 100.0 3.6E-38 1.2E-42 346.6 15.3 269 531-827 9-310 (396)
146 2v62_A Serine/threonine-protei 100.0 1.2E-38 4E-43 344.1 11.2 273 531-826 37-328 (345)
147 3kn6_A Ribosomal protein S6 ki 100.0 1.6E-38 5.6E-43 339.5 12.1 250 532-819 9-270 (325)
148 3t9t_A Tyrosine-protein kinase 100.0 2.5E-38 8.6E-43 329.0 12.6 258 530-827 7-265 (267)
149 2eue_A Carbon catabolite derep 100.0 2.8E-38 9.6E-43 330.0 12.8 248 530-820 12-263 (275)
150 1nxk_A MAP kinase-activated pr 100.0 7.5E-38 2.6E-42 343.7 16.7 256 530-820 60-322 (400)
151 2ac3_A MAP kinase-interacting 100.0 6E-38 2E-42 334.7 15.5 262 531-820 12-296 (316)
152 2wqm_A Serine/threonine-protei 100.0 3.5E-38 1.2E-42 335.5 13.6 268 529-829 30-300 (310)
153 1rjb_A FL cytokine receptor; k 100.0 2.8E-38 9.5E-43 341.6 12.8 271 528-829 42-337 (344)
154 2r5t_A Serine/threonine-protei 100.0 1.8E-38 6E-43 344.1 11.1 248 530-818 37-288 (373)
155 3lzb_A Epidermal growth factor 100.0 2.3E-38 8E-43 338.8 11.9 259 531-827 15-279 (327)
156 3mdy_A Bone morphogenetic prot 100.0 1.8E-37 6.2E-42 334.3 19.0 275 527-828 33-333 (337)
157 2h34_A Serine/threonine-protei 100.0 4.7E-38 1.6E-42 334.0 14.2 265 528-829 31-299 (309)
158 3kk8_A Calcium/calmodulin depe 100.0 5.6E-38 1.9E-42 329.5 14.6 253 530-820 5-262 (284)
159 3kmu_A ILK, integrin-linked ki 100.0 2.6E-38 9E-43 329.6 12.0 255 530-826 9-270 (271)
160 3ttj_A Mitogen-activated prote 100.0 9.5E-38 3.2E-42 349.0 17.3 260 530-820 61-356 (464)
161 3hko_A Calcium/calmodulin-depe 100.0 4.7E-38 1.6E-42 340.0 14.2 270 524-820 19-331 (345)
162 3llt_A Serine/threonine kinase 100.0 2.1E-38 7.1E-43 344.8 11.5 209 518-761 22-260 (360)
163 4ejn_A RAC-alpha serine/threon 100.0 1.7E-38 5.9E-43 355.0 11.2 250 530-820 147-405 (446)
164 3pls_A Macrophage-stimulating 100.0 7.9E-38 2.7E-42 330.9 15.6 267 532-831 22-292 (298)
165 3a62_A Ribosomal protein S6 ki 100.0 4.3E-38 1.5E-42 336.7 13.7 250 530-820 16-277 (327)
166 3cok_A Serine/threonine-protei 100.0 6.3E-38 2.1E-42 328.0 14.5 252 529-820 9-263 (278)
167 2vd5_A DMPK protein; serine/th 100.0 1.9E-38 6.5E-43 347.7 11.0 264 522-820 52-328 (412)
168 3cc6_A Protein tyrosine kinase 100.0 2.6E-38 9E-43 331.4 11.6 260 529-827 10-274 (281)
169 1t46_A HOMO sapiens V-KIT hard 100.0 3E-38 1E-42 336.6 12.3 269 529-828 21-309 (313)
170 3p1a_A MYT1 kinase, membrane-a 100.0 4.4E-38 1.5E-42 334.4 13.5 245 531-819 57-304 (311)
171 2a19_B Interferon-induced, dou 100.0 2.9E-38 9.8E-43 331.8 11.8 258 529-829 9-277 (284)
172 3rp9_A Mitogen-activated prote 100.0 1E-37 3.5E-42 350.3 17.0 205 531-755 53-279 (458)
173 1qpc_A LCK kinase; alpha beta 100.0 2.3E-38 7.8E-43 331.5 10.8 262 529-830 11-273 (279)
174 4agu_A Cyclin-dependent kinase 100.0 6E-38 2.1E-42 333.9 14.1 259 530-820 2-285 (311)
175 3lxp_A Non-receptor tyrosine-p 100.0 2.5E-38 8.6E-43 337.5 11.2 272 532-831 31-315 (318)
176 2qr7_A Ribosomal protein S6 ki 100.0 2.3E-38 7.8E-43 340.1 10.8 253 529-820 20-278 (342)
177 1ob3_A PFPK5, cell division co 100.0 5.3E-38 1.8E-42 330.2 13.3 257 531-820 2-281 (288)
178 2acx_A G protein-coupled recep 100.0 4.4E-38 1.5E-42 354.8 13.5 254 530-820 183-445 (576)
179 3n9x_A Phosphotransferase; mal 100.0 7.3E-38 2.5E-42 348.0 15.0 210 530-759 25-251 (432)
180 3i6u_A CDS1, serine/threonine- 100.0 1.9E-37 6.4E-42 343.0 18.0 255 528-820 132-400 (419)
181 2jam_A Calcium/calmodulin-depe 100.0 8E-38 2.7E-42 331.7 14.3 252 530-820 8-262 (304)
182 2buj_A Serine/threonine-protei 100.0 5.6E-38 1.9E-42 335.1 12.9 279 530-830 28-310 (317)
183 2yex_A Serine/threonine-protei 100.0 1.8E-37 6E-42 324.3 16.3 256 529-820 5-262 (276)
184 2pvf_A Fibroblast growth facto 100.0 5.7E-38 2E-42 337.4 12.9 268 530-829 34-321 (334)
185 1b6c_B TGF-B superfamily recep 100.0 2.8E-37 9.5E-42 333.6 18.2 274 525-828 36-338 (342)
186 1fmk_A C-SRC, P60-SRC, tyrosin 100.0 2.5E-38 8.6E-43 353.6 10.1 260 528-827 181-441 (452)
187 3og7_A AKAP9-BRAF fusion prote 100.0 7.7E-38 2.6E-42 329.1 13.3 261 530-826 23-288 (289)
188 1xbb_A Tyrosine-protein kinase 100.0 5.9E-38 2E-42 330.4 12.3 263 529-829 14-282 (291)
189 3oz6_A Mitogen-activated prote 100.0 5.1E-38 1.7E-42 345.0 12.2 269 528-820 6-329 (388)
190 3bhy_A Death-associated protei 100.0 1.6E-37 5.3E-42 325.9 15.4 257 531-825 5-273 (283)
191 1u59_A Tyrosine-protein kinase 100.0 8.7E-38 3E-42 328.4 13.4 263 531-830 9-276 (287)
192 3is5_A Calcium-dependent prote 100.0 9.4E-38 3.2E-42 327.6 13.5 253 531-819 22-278 (285)
193 2jii_A Serine/threonine-protei 100.0 3.8E-38 1.3E-42 341.3 10.4 271 531-829 42-339 (352)
194 2xir_A Vascular endothelial gr 100.0 3.3E-38 1.1E-42 336.9 9.7 279 521-829 17-313 (316)
195 2vgo_A Serine/threonine-protei 100.0 1.2E-37 4E-42 327.0 13.7 248 530-820 13-263 (284)
196 1u5q_A Serine/threonine protei 100.0 6.8E-38 2.3E-42 337.5 11.8 247 531-820 54-306 (348)
197 1mqb_A Ephrin type-A receptor 100.0 9.5E-38 3.3E-42 335.1 12.9 262 531-828 44-311 (333)
198 3gbz_A Kinase, CMGC CDK; ssgci 100.0 5.5E-38 1.9E-42 336.5 10.9 264 523-819 26-318 (329)
199 1p4o_A Insulin-like growth fac 100.0 3.4E-38 1.2E-42 337.6 9.1 274 521-826 15-299 (322)
200 1t4h_A Serine/threonine-protei 100.0 2.3E-37 7.8E-42 325.8 15.3 252 532-820 27-283 (290)
201 2i1m_A Macrophage colony-stimu 100.0 4.6E-38 1.6E-42 338.3 9.9 275 526-831 41-331 (333)
202 2rku_A Serine/threonine-protei 100.0 1.1E-37 3.6E-42 329.1 12.5 250 530-820 14-266 (294)
203 1byg_A CSK, protein (C-termina 100.0 5.7E-38 2E-42 328.2 10.1 255 529-827 19-274 (278)
204 3mwu_A Calmodulin-domain prote 100.0 2.8E-37 9.7E-42 349.2 16.5 253 529-820 20-277 (486)
205 3c4z_A Rhodopsin kinase; Ser/T 100.0 1.6E-37 5.5E-42 349.8 14.4 255 530-819 184-448 (543)
206 3e7e_A HBUB1, BUB1A, mitotic c 100.0 4.3E-37 1.5E-41 334.8 17.1 260 528-828 62-341 (365)
207 3lm5_A Serine/threonine-protei 100.0 1.6E-37 5.4E-42 332.6 13.3 263 522-820 19-288 (327)
208 2owb_A Serine/threonine-protei 100.0 1E-37 3.6E-42 335.2 11.6 250 530-820 40-292 (335)
209 3oja_B Anopheles plasmodium-re 100.0 4.3E-36 1.5E-40 348.3 25.8 312 21-383 49-360 (597)
210 3eqc_A Dual specificity mitoge 100.0 9.9E-38 3.4E-42 339.4 11.3 256 531-820 33-325 (360)
211 2y7j_A Phosphorylase B kinase 100.0 4.7E-37 1.6E-41 333.6 16.5 258 524-819 87-359 (365)
212 3mtl_A Cell division protein k 100.0 8.1E-38 2.8E-42 334.4 10.1 258 531-820 2-282 (324)
213 1fvr_A Tyrosine-protein kinase 100.0 1.7E-37 5.9E-42 332.7 12.5 262 531-827 25-301 (327)
214 3qyz_A Mitogen-activated prote 100.0 4.7E-37 1.6E-41 334.2 16.1 266 529-820 25-314 (364)
215 2ozo_A Tyrosine-protein kinase 100.0 2.8E-37 9.4E-42 357.0 15.1 261 532-829 336-601 (613)
216 3a7i_A MST3 kinase, serine/thr 100.0 3.1E-37 1.1E-41 327.1 14.2 249 531-820 22-271 (303)
217 3lij_A Calcium/calmodulin depe 100.0 3.8E-37 1.3E-41 348.7 15.8 252 530-820 36-292 (494)
218 3sv0_A Casein kinase I-like; t 100.0 6.2E-37 2.1E-41 342.1 17.1 270 530-827 6-279 (483)
219 4fmz_A Internalin; leucine ric 100.0 1.2E-35 4.2E-40 321.3 26.7 307 43-429 40-346 (347)
220 2h6d_A 5'-AMP-activated protei 100.0 3.5E-37 1.2E-41 321.9 14.0 249 530-820 10-262 (276)
221 3nyv_A Calmodulin-domain prote 100.0 1.9E-37 6.6E-42 350.7 12.9 252 530-820 25-282 (484)
222 1cm8_A Phosphorylated MAP kina 100.0 5.5E-37 1.9E-41 333.1 15.9 259 530-820 24-308 (367)
223 4fl3_A Tyrosine-protein kinase 100.0 2E-37 6.9E-42 358.8 13.0 254 537-828 375-633 (635)
224 3byv_A Rhoptry kinase; malaria 100.0 5.3E-38 1.8E-42 343.3 7.5 258 530-826 72-368 (377)
225 2j7t_A Serine/threonine-protei 100.0 1.6E-37 5.4E-42 329.2 10.9 253 530-819 18-275 (302)
226 4aaa_A Cyclin-dependent kinase 100.0 2.1E-37 7.3E-42 332.5 11.9 259 530-820 24-307 (331)
227 3ll6_A Cyclin G-associated kin 100.0 3E-37 1E-41 332.6 13.1 271 530-828 27-310 (337)
228 1ua2_A CAK, cell division prot 100.0 2.6E-37 8.9E-42 333.7 12.5 262 527-820 6-292 (346)
229 3q5i_A Protein kinase; CDPK, m 100.0 6.6E-37 2.2E-41 347.6 16.3 253 529-820 34-302 (504)
230 2clq_A Mitogen-activated prote 100.0 6E-37 2E-41 323.6 14.7 254 532-820 23-279 (295)
231 2w5a_A Serine/threonine-protei 100.0 7.4E-38 2.5E-42 327.7 7.7 260 530-823 5-271 (279)
232 3mi9_A Cell division protein k 100.0 6.8E-37 2.3E-41 331.5 15.5 268 530-820 16-312 (351)
233 2h8h_A Proto-oncogene tyrosine 100.0 9.8E-38 3.4E-42 355.7 9.1 261 527-827 263-524 (535)
234 1x8b_A WEE1HU, WEE1-like prote 100.0 2.5E-37 8.4E-42 325.5 11.4 249 529-820 9-280 (289)
235 3dbq_A Dual specificity protei 100.0 2.7E-37 9.2E-42 333.2 12.0 252 530-820 8-274 (343)
236 3com_A Serine/threonine-protei 100.0 8.3E-37 2.8E-41 325.6 15.0 253 529-820 27-279 (314)
237 3q60_A ROP5B; pseudokinase, tr 100.0 1.3E-37 4.5E-42 339.5 8.7 261 530-820 61-353 (371)
238 2yfx_A Tyrosine-protein kinase 100.0 1.8E-37 6E-42 332.6 9.5 266 530-827 29-305 (327)
239 2x7f_A TRAF2 and NCK-interacti 100.0 1.5E-37 5.1E-42 333.3 8.9 268 520-820 13-287 (326)
240 3nsz_A CK II alpha, casein kin 100.0 1.9E-36 6.6E-41 325.2 17.4 253 531-820 36-320 (330)
241 2xrw_A Mitogen-activated prote 100.0 2E-36 7E-41 329.8 17.4 260 530-820 24-319 (371)
242 1phk_A Phosphorylase kinase; g 100.0 9.6E-37 3.3E-41 322.5 14.3 253 529-819 15-283 (298)
243 2zmd_A Dual specificity protei 100.0 1.1E-36 3.7E-41 333.5 15.0 251 531-820 56-321 (390)
244 3pfq_A PKC-B, PKC-beta, protei 100.0 7.1E-37 2.4E-41 356.7 14.4 251 528-819 338-597 (674)
245 2ycf_A Serine/threonine-protei 100.0 1.7E-36 5.8E-41 324.2 16.0 253 529-819 8-274 (322)
246 3kvw_A DYRK2, dual specificity 100.0 1.6E-36 5.5E-41 336.3 16.3 197 530-761 96-300 (429)
247 3eb0_A Putative uncharacterize 100.0 7.6E-37 2.6E-41 334.9 13.4 263 527-820 3-322 (383)
248 1vzo_A Ribosomal protein S6 ki 100.0 3.5E-37 1.2E-41 333.5 10.6 253 530-820 53-322 (355)
249 2b9h_A MAP kinase FUS3, mitoge 100.0 9.3E-37 3.2E-41 331.0 13.7 270 530-820 10-306 (353)
250 3pg1_A Mitogen-activated prote 100.0 2.2E-36 7.7E-41 329.0 16.5 270 522-820 13-317 (362)
251 2wtk_C Serine/threonine-protei 100.0 1.9E-36 6.5E-41 321.4 15.3 256 529-820 3-264 (305)
252 4fmz_A Internalin; leucine ric 100.0 8.5E-35 2.9E-39 314.7 28.4 308 18-381 39-346 (347)
253 2fst_X Mitogen-activated prote 100.0 5.4E-37 1.8E-41 332.8 10.7 259 530-820 28-312 (367)
254 1u46_A ACK-1, activated CDC42 100.0 3.4E-37 1.2E-41 324.8 8.5 265 530-830 17-288 (291)
255 2vwi_A Serine/threonine-protei 100.0 2.5E-37 8.7E-42 327.8 7.1 270 528-820 12-288 (303)
256 2r3i_A Cell division protein k 100.0 2.1E-36 7.1E-41 320.1 13.8 260 530-820 2-284 (299)
257 3fme_A Dual specificity mitoge 100.0 8.7E-37 3E-41 321.5 10.8 256 530-820 6-267 (290)
258 2pml_X PFPK7, Ser/Thr protein 100.0 2E-36 6.9E-41 327.7 13.5 256 530-820 30-323 (348)
259 2i6l_A Mitogen-activated prote 100.0 2.7E-36 9.2E-41 322.6 13.8 262 531-820 11-306 (320)
260 1wak_A Serine/threonine-protei 100.0 3.8E-36 1.3E-40 331.9 14.9 261 530-820 36-392 (397)
261 3an0_A Dual specificity mitoge 100.0 2.4E-36 8.1E-41 325.8 12.7 257 529-820 49-311 (340)
262 1blx_A Cyclin-dependent kinase 100.0 8E-36 2.7E-40 319.8 16.6 265 529-820 9-297 (326)
263 1zy4_A Serine/threonine-protei 100.0 4.1E-36 1.4E-40 318.5 14.0 266 529-820 4-284 (303)
264 4exu_A Mitogen-activated prote 100.0 7.5E-36 2.6E-40 325.3 15.9 258 530-820 41-324 (371)
265 2wei_A Calmodulin-domain prote 100.0 5.4E-36 1.9E-40 314.7 14.1 254 528-820 19-277 (287)
266 1z57_A Dual specificity protei 100.0 6.2E-36 2.1E-40 322.6 14.9 256 530-820 13-329 (339)
267 1xku_A Decorin; proteoglycan, 100.0 4.6E-34 1.6E-38 306.4 29.1 291 24-331 32-330 (330)
268 3fhr_A MAP kinase-activated pr 100.0 4E-36 1.4E-40 322.7 13.0 255 530-820 27-288 (336)
269 2j0j_A Focal adhesion kinase 1 100.0 2.9E-36 9.9E-41 350.4 12.6 263 526-827 385-652 (656)
270 3e3p_A Protein kinase, putativ 100.0 7.3E-36 2.5E-40 324.8 15.0 270 523-820 15-315 (360)
271 3a99_A Proto-oncogene serine/t 100.0 1.5E-36 5.2E-41 323.9 8.8 243 529-820 41-294 (320)
272 1j1b_A Glycogen synthase kinas 100.0 3.3E-36 1.1E-40 333.1 11.5 259 531-820 54-337 (420)
273 1ogq_A PGIP-2, polygalacturona 100.0 2.3E-35 8E-40 313.1 17.6 256 201-458 52-310 (313)
274 4e7w_A Glycogen synthase kinas 100.0 5.3E-36 1.8E-40 328.8 12.2 260 531-820 40-322 (394)
275 2ft3_A Biglycan; proteoglycan, 100.0 2.8E-34 9.7E-39 308.1 25.4 291 23-331 33-331 (332)
276 2y4i_B KSR2, HKSR2, kinase sup 100.0 2E-36 6.9E-41 323.4 7.8 268 524-828 26-304 (319)
277 2iwi_A Serine/threonine-protei 100.0 3E-36 1E-40 320.8 8.7 246 526-820 26-284 (312)
278 2vx3_A Dual specificity tyrosi 100.0 1.4E-35 4.9E-40 324.6 14.1 202 527-761 50-259 (382)
279 3coi_A Mitogen-activated prote 100.0 2E-35 6.8E-40 320.2 14.5 257 531-820 24-306 (353)
280 1q8y_A SR protein kinase; tran 100.0 1.6E-35 5.5E-40 323.9 12.7 261 530-820 18-334 (373)
281 2ft3_A Biglycan; proteoglycan, 100.0 1.2E-33 4.2E-38 303.2 27.1 288 72-427 34-331 (332)
282 2eu9_A Dual specificity protei 100.0 3.2E-35 1.1E-39 319.3 14.8 256 530-820 18-334 (355)
283 3aln_A Dual specificity mitoge 100.0 2.3E-35 7.9E-40 316.2 13.1 260 530-820 21-286 (327)
284 1xku_A Decorin; proteoglycan, 100.0 1.6E-33 5.5E-38 302.1 27.2 291 48-403 32-330 (330)
285 3rgf_A Cyclin-dependent kinase 100.0 1.1E-35 3.8E-40 328.2 10.7 207 531-761 20-237 (405)
286 3cek_A Dual specificity protei 100.0 9.4E-36 3.2E-40 317.1 8.9 261 521-820 18-293 (313)
287 3qa8_A MGC80376 protein; kinas 100.0 2E-35 7E-40 335.9 10.6 272 529-825 12-308 (676)
288 2rio_A Serine/threonine-protei 100.0 3.2E-35 1.1E-39 326.7 11.8 257 532-819 16-295 (434)
289 1z7x_W Ribonuclease inhibitor; 100.0 2E-37 6.7E-42 349.4 -8.8 389 23-432 3-443 (461)
290 2dyl_A Dual specificity mitoge 100.0 6.5E-35 2.2E-39 311.6 10.8 254 529-820 23-284 (318)
291 2vuw_A Serine/threonine-protei 100.0 9.5E-35 3.3E-39 312.5 11.5 246 530-818 19-329 (336)
292 3p23_A Serine/threonine-protei 100.0 1.2E-34 4.3E-39 320.7 11.9 251 530-819 23-283 (432)
293 3uqc_A Probable conserved tran 100.0 4.9E-34 1.7E-38 298.5 15.3 233 531-828 31-267 (286)
294 2pzi_A Probable serine/threoni 100.0 3.6E-34 1.2E-38 336.6 14.3 246 531-826 80-328 (681)
295 1ogq_A PGIP-2, polygalacturona 100.0 9.9E-34 3.4E-38 300.5 15.2 255 174-433 50-308 (313)
296 1z7x_W Ribonuclease inhibitor; 100.0 1.1E-35 3.9E-40 335.0 -3.0 376 73-451 5-439 (461)
297 3dzo_A Rhoptry kinase domain; 100.0 9.7E-34 3.3E-38 312.6 11.8 252 530-820 77-364 (413)
298 3m2w_A MAP kinase-activated pr 100.0 6.1E-33 2.1E-37 293.2 15.8 235 530-820 16-257 (299)
299 3zyi_A Leucine-rich repeat-con 100.0 1.8E-30 6.3E-35 290.8 26.7 248 24-308 55-303 (452)
300 3zyj_A Leucine-rich repeat-con 100.0 1.9E-30 6.5E-35 289.6 26.4 249 23-308 43-292 (440)
301 2z80_A TOLL-like receptor 2, v 100.0 4.9E-31 1.7E-35 285.5 20.4 276 3-310 35-316 (353)
302 2z80_A TOLL-like receptor 2, v 100.0 5.7E-31 1.9E-35 285.0 18.5 282 69-434 29-319 (353)
303 3zyj_A Leucine-rich repeat-con 100.0 4.3E-30 1.5E-34 286.8 25.5 246 2-284 46-292 (440)
304 3zyi_A Leucine-rich repeat-con 100.0 5.5E-30 1.9E-34 286.9 25.7 246 2-284 57-303 (452)
305 2z66_A Variable lymphocyte rec 100.0 5.1E-31 1.7E-35 279.5 15.2 277 147-459 10-294 (306)
306 2z66_A Variable lymphocyte rec 100.0 3.2E-30 1.1E-34 273.3 20.5 249 26-309 10-262 (306)
307 1ozn_A Reticulon 4 receptor; N 100.0 6.2E-30 2.1E-34 268.0 18.5 253 3-315 15-268 (285)
308 1ozn_A Reticulon 4 receptor; N 100.0 7E-30 2.4E-34 267.7 17.9 254 177-459 14-268 (285)
309 3oja_A Leucine-rich immune mol 100.0 1.5E-30 5.1E-35 292.9 11.3 242 200-456 35-286 (487)
310 3g06_A SSPH2 (leucine-rich rep 100.0 3E-28 1E-32 279.2 26.9 84 324-416 225-308 (622)
311 3o53_A Protein LRIM1, AGAP0063 100.0 1.1E-30 3.9E-35 277.8 6.0 256 4-304 15-271 (317)
312 3g06_A SSPH2 (leucine-rich rep 100.0 4.1E-28 1.4E-32 278.1 26.7 261 1-313 42-302 (622)
313 3ogk_B Coronatine-insensitive 100.0 1.9E-31 6.4E-36 310.6 -3.5 407 15-431 65-528 (592)
314 4fcg_A Uncharacterized protein 100.0 2.8E-28 9.6E-33 260.1 20.3 212 214-430 95-315 (328)
315 1wwl_A Monocyte differentiatio 100.0 5.7E-30 1.9E-34 271.7 6.3 249 170-430 39-310 (312)
316 4azs_A Methyltransferase WBDD; 100.0 1.3E-29 4.3E-34 289.0 9.2 193 538-756 241-444 (569)
317 3o53_A Protein LRIM1, AGAP0063 100.0 3.6E-30 1.2E-34 273.9 3.4 264 75-409 14-280 (317)
318 3ogk_B Coronatine-insensitive 100.0 1.7E-30 5.8E-35 302.4 0.7 418 1-426 75-548 (592)
319 1wwl_A Monocyte differentiatio 100.0 3.4E-30 1.2E-34 273.5 2.7 248 44-308 40-309 (312)
320 4fcg_A Uncharacterized protein 100.0 1.2E-27 4.1E-32 255.2 20.7 185 218-406 122-315 (328)
321 3oja_A Leucine-rich immune mol 99.9 6.4E-28 2.2E-32 271.4 10.6 244 175-434 35-287 (487)
322 2z62_A TOLL-like receptor 4, v 99.9 1.6E-26 5.3E-31 240.9 18.0 228 178-435 11-243 (276)
323 2z62_A TOLL-like receptor 4, v 99.9 2.7E-26 9.2E-31 239.1 19.7 227 27-285 11-238 (276)
324 2p1m_B Transport inhibitor res 99.9 8.4E-29 2.9E-33 288.3 -2.8 412 3-429 47-519 (594)
325 2o6q_A Variable lymphocyte rec 99.9 3E-25 1E-29 230.1 22.7 156 22-187 15-170 (270)
326 2o6q_A Variable lymphocyte rec 99.9 2.2E-25 7.5E-30 231.2 21.4 206 225-434 18-223 (270)
327 1p9a_G Platelet glycoprotein I 99.9 1.5E-25 5.2E-30 234.3 18.3 207 219-433 6-212 (290)
328 1p9a_G Platelet glycoprotein I 99.9 2E-25 7E-30 233.3 18.5 207 242-455 5-211 (290)
329 2p1m_B Transport inhibitor res 99.9 2.2E-28 7.5E-33 284.8 -6.2 424 1-430 68-545 (594)
330 3rfs_A Internalin B, repeat mo 99.9 1.7E-24 5.7E-29 224.7 17.9 223 5-272 25-247 (272)
331 3goz_A Leucine-rich repeat-con 99.9 6.1E-26 2.1E-30 246.1 7.0 262 28-313 3-302 (362)
332 3rfs_A Internalin B, repeat mo 99.9 4.6E-25 1.6E-29 228.9 12.9 181 220-434 60-240 (272)
333 3goz_A Leucine-rich repeat-con 99.9 6.6E-26 2.3E-30 245.8 6.3 260 3-286 2-299 (362)
334 4ay9_X Follicle-stimulating ho 99.9 1.1E-24 3.8E-29 234.8 15.4 240 26-305 12-256 (350)
335 3en9_A Glycoprotease, O-sialog 99.9 1.3E-25 4.3E-30 254.6 8.3 176 533-735 338-523 (540)
336 2xwt_C Thyrotropin receptor; s 99.9 2.3E-24 8E-29 219.1 15.5 196 48-281 32-236 (239)
337 3m19_A Variable lymphocyte rec 99.9 2.2E-23 7.5E-28 213.5 20.2 178 2-189 17-194 (251)
338 2xwt_C Thyrotropin receptor; s 99.9 5.2E-24 1.8E-28 216.6 15.4 207 10-233 22-236 (239)
339 4ay9_X Follicle-stimulating ho 99.9 5.3E-24 1.8E-28 229.5 15.2 240 2-282 12-257 (350)
340 1h6u_A Internalin H; cell adhe 99.9 2.8E-23 9.6E-28 219.3 17.3 193 44-284 38-230 (308)
341 2ca6_A RAN GTPase-activating p 99.9 7.2E-26 2.4E-30 248.1 -3.8 250 38-309 23-317 (386)
342 1h6u_A Internalin H; cell adhe 99.9 4.2E-23 1.5E-27 218.0 17.2 209 6-265 26-234 (308)
343 4glp_A Monocyte differentiatio 99.9 2.3E-23 7.9E-28 220.6 14.5 229 175-430 65-308 (310)
344 4glp_A Monocyte differentiatio 99.9 1.2E-23 4.1E-28 222.8 12.3 227 1-261 66-308 (310)
345 3m19_A Variable lymphocyte rec 99.9 9.1E-23 3.1E-27 208.9 18.0 181 223-431 14-194 (251)
346 1zar_A RIO2 kinase; serine kin 99.9 9.9E-24 3.4E-28 218.9 10.0 153 524-724 83-253 (282)
347 2ast_B S-phase kinase-associat 99.9 8.3E-24 2.8E-28 227.2 7.1 225 25-281 49-282 (336)
348 2o6s_A Variable lymphocyte rec 99.9 1.1E-22 3.9E-27 201.8 14.2 181 2-199 10-190 (208)
349 2ast_B S-phase kinase-associat 99.9 1E-23 3.5E-28 226.5 7.0 254 1-293 49-315 (336)
350 2ca6_A RAN GTPase-activating p 99.9 1.2E-24 4.2E-29 238.3 -0.4 243 168-432 26-319 (386)
351 2o6s_A Variable lymphocyte rec 99.9 1.6E-21 5.5E-26 193.5 15.8 153 25-187 9-161 (208)
352 2v9t_B SLIT homolog 2 protein 99.9 3.2E-21 1.1E-25 192.7 16.2 152 2-157 14-165 (220)
353 2xot_A Amphoterin-induced prot 99.8 3.2E-21 1.1E-25 208.6 14.4 180 26-212 21-202 (361)
354 3cvr_A Invasion plasmid antige 99.8 8.3E-21 2.8E-25 214.8 17.8 195 24-271 60-254 (571)
355 3cvr_A Invasion plasmid antige 99.8 1.1E-20 3.6E-25 213.9 16.7 189 72-320 60-255 (571)
356 2v70_A SLIT-2, SLIT homolog 2 99.8 1.7E-20 5.7E-25 187.4 16.2 150 3-156 15-165 (220)
357 1m9s_A Internalin B; cell inva 99.8 5.5E-21 1.9E-25 218.9 14.2 64 219-286 149-212 (605)
358 1h6t_A Internalin B; cell adhe 99.8 1.6E-20 5.5E-25 196.3 15.0 64 218-285 151-214 (291)
359 2v70_A SLIT-2, SLIT homolog 2 99.8 5.7E-21 2E-25 190.8 10.9 158 250-435 14-172 (220)
360 2v9t_B SLIT homolog 2 protein 99.8 5.9E-21 2E-25 190.7 10.7 157 250-434 14-170 (220)
361 2xot_A Amphoterin-induced prot 99.8 1E-20 3.6E-25 204.6 13.3 181 226-434 21-207 (361)
362 3e6j_A Variable lymphocyte rec 99.8 4.9E-20 1.7E-24 185.4 17.0 155 25-190 21-175 (229)
363 3sb4_A Hypothetical leucine ri 99.8 9.5E-21 3.2E-25 202.3 10.6 266 22-308 24-310 (329)
364 1h6t_A Internalin B; cell adhe 99.8 7.1E-20 2.4E-24 191.4 16.0 173 19-213 42-214 (291)
365 1m9s_A Internalin B; cell inva 99.8 1.2E-19 4.1E-24 207.8 17.3 189 73-309 23-211 (605)
366 4fdw_A Leucine rich hypothetic 99.8 1.7E-18 5.7E-23 188.5 23.9 259 11-308 124-383 (401)
367 1zth_A RIO1 serine protein kin 99.8 5.4E-20 1.8E-24 188.6 11.0 137 533-692 49-219 (258)
368 3e6j_A Variable lymphocyte rec 99.8 5.4E-19 1.9E-23 177.7 17.3 152 2-158 22-173 (229)
369 1xeu_A Internalin C; cellular 99.8 2.6E-20 8.9E-25 191.5 5.5 61 220-284 125-185 (263)
370 1xeu_A Internalin C; cellular 99.8 6.1E-20 2.1E-24 188.7 8.1 101 47-157 19-119 (263)
371 1dce_A Protein (RAB geranylger 99.8 5.4E-22 1.8E-26 226.0 -10.5 203 44-301 346-566 (567)
372 1w8a_A SLIT protein; signaling 99.8 2.6E-19 8.9E-24 174.7 9.3 158 298-459 11-169 (192)
373 3sb4_A Hypothetical leucine ri 99.8 2.9E-19 1E-23 190.7 10.0 285 1-302 27-328 (329)
374 4ezg_A Putative uncharacterize 99.8 1.7E-18 5.9E-23 169.8 14.1 155 18-187 39-194 (197)
375 4b8c_D Glucose-repressible alc 99.8 1.4E-19 4.9E-24 212.7 7.4 227 23-284 173-404 (727)
376 4fdw_A Leucine rich hypothetic 99.8 1.9E-17 6.4E-22 180.3 22.9 241 47-308 113-358 (401)
377 4ezg_A Putative uncharacterize 99.8 8E-19 2.7E-23 172.2 10.3 155 43-213 40-195 (197)
378 1dce_A Protein (RAB geranylger 99.8 4.7E-21 1.6E-25 218.2 -7.5 193 220-436 346-553 (567)
379 4fs7_A Uncharacterized protein 99.8 4E-17 1.4E-21 178.7 24.1 335 35-421 59-393 (394)
380 4b8c_D Glucose-repressible alc 99.8 4.8E-19 1.7E-23 208.2 7.8 178 169-381 219-404 (727)
381 1w8a_A SLIT protein; signaling 99.7 1.6E-17 5.3E-22 162.0 14.2 128 26-157 11-139 (192)
382 2wfh_A SLIT homolog 2 protein 99.7 3.5E-18 1.2E-22 166.6 9.5 157 298-459 13-169 (193)
383 4fs7_A Uncharacterized protein 99.7 1.4E-16 4.7E-21 174.4 21.8 319 58-426 58-376 (394)
384 2ell_A Acidic leucine-rich nuc 99.7 1.3E-17 4.6E-22 158.9 9.9 140 20-162 21-165 (168)
385 2wfh_A SLIT homolog 2 protein 99.7 5E-17 1.7E-21 158.3 13.9 128 26-158 13-140 (193)
386 2ell_A Acidic leucine-rich nuc 99.7 2.9E-17 9.9E-22 156.6 10.3 141 46-193 23-165 (168)
387 2o6r_A Variable lymphocyte rec 99.7 2.7E-16 9.3E-21 151.2 14.7 130 25-158 9-138 (177)
388 4gyi_A RIO2 kinase; protein ki 99.7 2.5E-17 8.7E-22 174.2 7.9 138 532-694 96-267 (397)
389 2je0_A Acidic leucine-rich nuc 99.7 7.2E-17 2.4E-21 150.4 9.0 130 21-153 15-149 (149)
390 2o6r_A Variable lymphocyte rec 99.7 4.2E-16 1.4E-20 149.9 14.3 132 49-190 9-140 (177)
391 2je0_A Acidic leucine-rich nuc 99.7 8.8E-17 3E-21 149.8 9.0 132 46-183 16-149 (149)
392 1a9n_A U2A', U2A'; complex (nu 99.6 2.3E-16 8E-21 151.4 8.7 134 17-156 13-152 (176)
393 4gt6_A Cell surface protein; l 99.6 3.1E-14 1.1E-18 155.7 24.5 130 17-152 57-190 (394)
394 4gt6_A Cell surface protein; l 99.6 6.9E-14 2.4E-18 152.9 24.3 322 35-427 51-389 (394)
395 1a9n_A U2A', U2A'; complex (nu 99.6 1.3E-15 4.3E-20 146.3 8.8 130 1-135 21-155 (176)
396 3g39_A Variable lymphocyte rec 99.6 9.3E-15 3.2E-19 139.1 11.1 109 323-434 12-120 (170)
397 1ds9_A Outer arm dynein; leuci 99.6 2.4E-17 8.3E-22 161.7 -7.8 161 19-187 14-185 (198)
398 3g39_A Variable lymphocyte rec 99.5 2.4E-14 8.2E-19 136.2 12.2 108 24-135 10-117 (170)
399 2r9u_A Variable lymphocyte rec 99.5 1.9E-14 6.6E-19 137.3 11.2 109 323-434 15-123 (174)
400 2r9u_A Variable lymphocyte rec 99.5 3.9E-14 1.3E-18 135.2 12.3 107 25-135 14-120 (174)
401 1ds9_A Outer arm dynein; leuci 99.5 1.2E-16 4.2E-21 156.6 -5.5 135 219-383 14-155 (198)
402 2ifg_A High affinity nerve gro 99.4 1.8E-13 6.1E-18 147.1 8.9 131 324-457 12-146 (347)
403 3un9_A NLR family member X1; l 99.4 4.5E-15 1.6E-19 159.8 -4.0 144 96-262 101-254 (372)
404 4h09_A Hypothetical leucine ri 99.4 2.2E-11 7.5E-16 132.4 25.0 167 219-416 190-356 (379)
405 4h09_A Hypothetical leucine ri 99.4 1.7E-11 5.9E-16 133.2 23.4 147 215-391 209-355 (379)
406 3un9_A NLR family member X1; l 99.4 1.1E-14 3.6E-19 157.0 -5.4 173 47-221 72-261 (372)
407 2ifg_A High affinity nerve gro 99.3 1.7E-12 5.9E-17 139.4 10.6 105 26-134 11-117 (347)
408 3tm0_A Aminoglycoside 3'-phosp 99.3 7.3E-12 2.5E-16 128.6 13.5 148 525-690 8-212 (263)
409 1nd4_A Aminoglycoside 3'-phosp 99.1 1.1E-10 3.8E-15 119.7 10.3 139 529-690 18-213 (264)
410 3dxp_A Putative acyl-COA dehyd 99.0 6.8E-10 2.3E-14 119.5 11.3 145 535-691 42-248 (359)
411 2ra8_A Uncharacterized protein 98.9 8.7E-10 3E-14 117.4 8.1 164 90-282 166-341 (362)
412 2ra8_A Uncharacterized protein 98.9 8E-10 2.8E-14 117.7 6.2 186 218-427 134-341 (362)
413 3r70_A Aminoglycoside phosphot 98.7 8.3E-08 2.8E-12 101.2 12.0 136 532-691 38-237 (320)
414 3sg8_A APH(2'')-ID; antibiotic 98.6 8.1E-08 2.8E-12 100.5 9.1 139 536-691 25-223 (304)
415 4gkh_A Aminoglycoside 3'-phosp 98.5 6.4E-07 2.2E-11 92.0 12.4 144 528-690 22-222 (272)
416 3rw6_A Nuclear RNA export fact 98.5 2.7E-08 9.3E-13 100.2 1.6 106 19-126 137-257 (267)
417 1io0_A Tropomodulin; LRR prote 98.5 2.5E-08 8.6E-13 95.7 0.7 68 118-187 91-164 (185)
418 3tdw_A Gentamicin resistance p 98.5 7.7E-07 2.6E-11 92.9 12.1 136 536-690 24-223 (306)
419 1io0_A Tropomodulin; LRR prote 98.4 3.6E-08 1.2E-12 94.6 1.3 18 116-133 32-50 (185)
420 3d1u_A Putative fructosamine-3 98.4 8.4E-07 2.9E-11 91.4 11.1 77 534-620 18-97 (288)
421 3rw6_A Nuclear RNA export fact 98.4 6.8E-08 2.3E-12 97.2 1.7 80 341-422 167-257 (267)
422 3ovc_A Hygromycin-B 4-O-kinase 98.3 2.5E-06 8.7E-11 91.1 12.4 79 532-621 42-122 (362)
423 3ats_A Putative uncharacterize 98.2 5.1E-06 1.7E-10 89.0 12.6 85 536-622 25-122 (357)
424 2olc_A MTR kinase, methylthior 98.1 1.1E-05 3.7E-10 87.8 11.3 76 536-618 35-120 (397)
425 3e4g_A ATP synthase subunit S, 97.9 2.9E-06 1E-10 78.9 2.7 83 47-130 61-149 (176)
426 3e4g_A ATP synthase subunit S, 97.9 5.7E-06 2E-10 77.0 3.4 84 344-427 61-150 (176)
427 3jr1_A Putative fructosamine-3 97.8 0.00014 4.9E-09 75.3 12.3 75 536-620 41-118 (312)
428 2q83_A YTAA protein; 2635576, 97.8 0.00021 7.3E-09 75.7 13.9 148 537-690 38-251 (346)
429 3f7w_A Putative fructosamine-3 97.6 0.00024 8.2E-09 73.2 11.3 78 532-619 16-96 (288)
430 2pyw_A Uncharacterized protein 97.5 0.00027 9.2E-09 77.2 9.9 30 661-691 232-261 (420)
431 3dxq_A Choline/ethanolamine ki 97.4 0.00045 1.5E-08 71.6 10.6 74 533-620 20-95 (301)
432 2ppq_A HSK, HK, homoserine kin 97.4 0.00063 2.1E-08 71.3 11.6 168 520-691 6-217 (322)
433 3rfe_A Platelet glycoprotein I 97.4 0.00018 6.1E-09 63.8 6.2 61 372-434 12-73 (130)
434 1pgv_A TMD-1, tropomodulin TMD 97.4 4.8E-05 1.7E-09 72.1 1.7 16 172-187 68-83 (197)
435 1pgv_A TMD-1, tropomodulin TMD 97.3 6.6E-05 2.2E-09 71.2 1.9 67 116-184 66-136 (197)
436 2qg7_A Ethanolamine kinase PV0 97.3 0.0013 4.4E-08 72.0 11.8 75 536-620 113-188 (458)
437 3csv_A Aminoglycoside phosphot 97.2 0.0011 3.7E-08 69.8 10.7 144 537-691 24-217 (333)
438 1zyl_A Hypothetical protein YI 97.1 0.0031 1E-07 66.1 12.7 99 518-620 8-114 (328)
439 1nw1_A Choline kinase (49.2 KD 97.1 0.0013 4.3E-08 71.8 9.4 74 536-620 78-159 (429)
440 3feg_A Choline/ethanolamine ki 97.0 0.0013 4.4E-08 70.0 8.7 146 536-691 55-254 (379)
441 3rfe_A Platelet glycoprotein I 97.0 0.001 3.4E-08 58.9 6.5 55 27-83 12-67 (130)
442 3c5i_A Choline kinase; choline 96.8 0.0029 9.9E-08 67.6 9.0 75 536-620 38-121 (369)
443 3i1a_A Spectinomycin phosphotr 96.5 0.0092 3.1E-07 62.7 10.8 31 661-691 206-236 (339)
444 3f2s_A CK, chetk-alpha, cholin 96.1 0.014 5E-07 62.1 9.4 146 537-691 58-280 (401)
445 3mes_A Choline kinase; malaria 95.8 0.017 6E-07 62.2 8.5 145 536-691 75-291 (424)
446 2yle_A Protein spire homolog 1 94.8 0.059 2E-06 51.2 7.2 104 619-761 34-137 (229)
447 3g15_A CK, chetk-alpha, cholin 94.5 0.094 3.2E-06 56.4 9.1 29 663-691 246-280 (401)
448 4ann_A ESSB; membrane protein, 83.0 2 7E-05 40.7 6.4 51 635-690 77-127 (215)
449 4ano_A ESSB; membrane protein, 82.6 3.2 0.00011 39.5 7.6 51 635-690 81-132 (219)
450 3cxl_A N-chimerin; SH2, RHO-GA 81.5 0.16 5.5E-06 55.5 -2.1 63 534-599 145-215 (463)
451 2jwa_A Receptor tyrosine-prote 70.1 1.4 4.7E-05 29.6 0.8 7 497-503 33-39 (44)
452 2l2t_A Receptor tyrosine-prote 68.2 2.3 7.8E-05 28.6 1.6 7 497-503 32-38 (44)
453 2lz0_A Uncharacterized protein 66.5 12 0.0004 30.6 6.1 17 62-78 34-50 (100)
454 2lz0_A Uncharacterized protein 63.0 19 0.00064 29.4 6.7 45 235-280 8-52 (100)
455 3ls8_A Phosphatidylinositol 3- 30.8 5.8E+02 0.02 28.2 13.8 46 638-690 454-501 (614)
456 1cja_A Protein (actin-fragmin 30.2 1.9E+02 0.0064 29.3 8.9 146 533-691 71-237 (342)
457 2k9y_A Ephrin type-A receptor 28.3 14 0.00048 24.3 0.3 9 483-491 19-27 (41)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=6.9e-59 Score=555.46 Aligned_cols=460 Identities=32% Similarity=0.531 Sum_probs=378.6
Q ss_pred CcEEEcCCCcCcccCCccccCCCCCCEEEccCCcccccCCccCCCCCCCCEEEcCCCcccccCCccccCCCCCcEEECCC
Q 040925 1 LQTLAVNDNYLTGQLPDFVGNLSDLEVIRIMGNSLGGKIPTTLGLLRNLVSLNVAENKFSGMFPRSICNISSLELIQLAL 80 (833)
Q Consensus 1 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~ 80 (833)
|++|+|++|.+++.+|. ++++++|++|++++|++++.+|..|+.+++|++|+|++|++++..|.. .+++|++|+|++
T Consensus 202 L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~ 278 (768)
T 3rgz_A 202 LEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAE 278 (768)
T ss_dssp CCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCS
T ss_pred CCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc--ccCCCCEEECcC
Confidence 57778888888776666 888888888888888887777878888888888888888877666654 677777777777
Q ss_pred cccccccCchhhcCCCCccEEEccCCcceeeCCccccCCCCCcEEEcccCccccccC-cCccCCCcCceEecccccCCCC
Q 040925 81 NRFSGNLPFDIVVNLPNLKALAIGGNNFFGSIPYSLSNASNLELLDLSVNQFKGNVS-IDFSSLKNLLWLNLEQNNLGTG 159 (833)
Q Consensus 81 N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~-~~~~~l~~L~~L~L~~N~l~~~ 159 (833)
|++++.+|..++..+++|++|+|++|.+++..|..|+++++|++|+|++|++++..+ ..|..+++|++|+|++|.++..
T Consensus 279 n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~ 358 (768)
T 3rgz_A 279 NKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGE 358 (768)
T ss_dssp SEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEEC
T ss_pred CccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCcc
Confidence 777767777666556888888888888877778888888888888888888773333 4477788888888888777622
Q ss_pred CCCCcc-------------------cccccCC--CCCCCEEEccCCcCcccCChhHhhhcccccEEEccCccccccCChh
Q 040925 160 TATDLD-------------------FVTFLTN--CSSLKALSLADNQFGGELPHSIANLSSTVINFGIGRNQISGTIPPG 218 (833)
Q Consensus 160 ~~~~~~-------------------~~~~l~~--l~~L~~L~Ls~N~l~~~~p~~~~~l~~~l~~L~l~~n~i~~~~~~~ 218 (833)
.+..+. .+..+.. +++|++|+|++|++++.+|..+.++.. ++.|++++|++++..|..
T Consensus 359 ~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~-L~~L~Ls~N~l~~~~p~~ 437 (768)
T 3rgz_A 359 LPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSE-LVSLHLSFNYLSGTIPSS 437 (768)
T ss_dssp CCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTT-CCEEECCSSEEESCCCGG
T ss_pred ccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCC-CCEEECcCCcccCcccHH
Confidence 111110 1112222 667888888888888888888877754 788888888888888888
Q ss_pred hhcCCCCCeEeccCCcccccCCccccCCCCCCEEEcccccCcccCCccccCCCCCCeEEeecccccCCCCCCCCCCCccc
Q 040925 219 IRNLVNLIGFGAEENQLHGTIPDAIGELKNLQKLCLFRNFLQGRIPSGLGNLTKLANLELSSNSLQGNIPSSLGNCQNLM 298 (833)
Q Consensus 219 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 298 (833)
|.++++|+.|++++|++.+.+|..|..+++|++|+|++|.+++.+|..|.++++|++|+|++|++++.+|.+|+.+++|+
T Consensus 438 l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~ 517 (768)
T 3rgz_A 438 LGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLA 517 (768)
T ss_dssp GGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCC
T ss_pred HhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCC
Confidence 88888899999999988888888888889999999999999888888888899999999999999888888899999999
Q ss_pred eeecCCceecccCCcccccccccceeeecCCCccCCCCCcc---------------------------------------
Q 040925 299 SFTASQNKLTGALPHQLLSITTLSLYLDLSNNLLNGSLPLQ--------------------------------------- 339 (833)
Q Consensus 299 ~L~l~~N~l~~~~p~~~~~~~~ll~~L~ls~N~l~~~~~~~--------------------------------------- 339 (833)
.|++++|++++.+|..+..+..+ ++|++++|.+++.+|..
T Consensus 518 ~L~L~~N~l~~~~p~~l~~l~~L-~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 596 (768)
T 3rgz_A 518 ILKLSNNSFSGNIPAELGDCRSL-IWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEF 596 (768)
T ss_dssp EEECCSSCCEEECCGGGGGCTTC-CEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEEC
T ss_pred EEECCCCcccCcCCHHHcCCCCC-CEEECCCCccCCcCChHHhcccchhhhhcccccccccccccccccccccccccccc
Confidence 99999999988888888888887 78999999887766653
Q ss_pred -------------------------------cccCCCcCEEeccCCcCCCCCCccccCCCCCcEEeecCCccccccCccc
Q 040925 340 -------------------------------VGHLKNLVILDISSNQFSGVIPGTLSTCVCLEYLDISSNSFHGVIPLSL 388 (833)
Q Consensus 340 -------------------------------~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 388 (833)
|+.+++|+.|||++|++++.+|..|+.+++|+.|+|++|++++.+|..+
T Consensus 597 ~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l 676 (768)
T 3rgz_A 597 QGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEV 676 (768)
T ss_dssp TTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGG
T ss_pred ccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHH
Confidence 3446789999999999999999999999999999999999999999999
Q ss_pred cCCCCCCeEEccCcccCCCchhhhcCCCCCceEECccCcCccccCCCCccCCCccccccCCcCCCCCcccCCCCCCCCCC
Q 040925 389 SFLKSIKELNVSSNNLSGQIPEFLKNLSVLEFLSLSYNHFEGEVPTKGVFSNKTKISLQGNMKLCGGIDELHLPSCPSKG 468 (833)
Q Consensus 389 ~~l~~L~~L~l~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~l~l~~N~~~c~~~~~~~~~~~~~~~ 468 (833)
+.+++|+.|||++|+++|.+|..+..++.|+.||+++|+++|.+|..+.+..+....+.||+.+||.+. +.|+...
T Consensus 677 ~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l----~~C~~~~ 752 (768)
T 3rgz_A 677 GDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPL----PRCDPSN 752 (768)
T ss_dssp GGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTTS----CCCCSCC
T ss_pred hCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCchhhccCCHHHhcCCchhcCCCC----cCCCCCc
Confidence 999999999999999999999999999999999999999999999999999999999999999999863 3675443
Q ss_pred C
Q 040925 469 S 469 (833)
Q Consensus 469 ~ 469 (833)
.
T Consensus 753 ~ 753 (768)
T 3rgz_A 753 A 753 (768)
T ss_dssp -
T ss_pred c
Confidence 3
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=4.8e-55 Score=522.26 Aligned_cols=443 Identities=36% Similarity=0.569 Sum_probs=340.5
Q ss_pred CcEEEcCCCcCcccCCccccCCCCCCEEEccCCcccccCCccCCCCCCCCEEEcCCCcccccCCccccCCCCCcEEECCC
Q 040925 1 LQTLAVNDNYLTGQLPDFVGNLSDLEVIRIMGNSLGGKIPTTLGLLRNLVSLNVAENKFSGMFPRSICNISSLELIQLAL 80 (833)
Q Consensus 1 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~ 80 (833)
|++|++++|.+++..| +..+++|++|++++|++.+.+|. |+.+++|++|+|++|++++..|..|.++++|++|+|++
T Consensus 180 L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~ 256 (768)
T 3rgz_A 180 LKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISS 256 (768)
T ss_dssp CCEEECCSSEEESCCB--CTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCS
T ss_pred CCEEECCCCcccccCC--cccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCC
Confidence 3445555555543322 36777888888888888776776 88888899999999988888888888999999999999
Q ss_pred cccccccCchhhcCCCCccEEEccCCcceeeCCccccCC-CCCcEEEcccCccccccCcCccCCCcCceEecccccCC-C
Q 040925 81 NRFSGNLPFDIVVNLPNLKALAIGGNNFFGSIPYSLSNA-SNLELLDLSVNQFKGNVSIDFSSLKNLLWLNLEQNNLG-T 158 (833)
Q Consensus 81 N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l-~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~-~ 158 (833)
|++++.+|.. .+++|++|+|++|.+++.+|..+..+ ++|++|+|++|++++..+..|..+++|++|+|++|+++ .
T Consensus 257 n~l~~~~~~~---~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ 333 (768)
T 3rgz_A 257 NQFVGPIPPL---PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGE 333 (768)
T ss_dssp SCCEESCCCC---CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEE
T ss_pred CcccCccCcc---ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCc
Confidence 9888666653 78899999999999988888888775 99999999999999999999999999999999999986 4
Q ss_pred CCCCCcccccccCCCCCCCEEEccCCcCcccCChhHhhhccc--------------------------ccEEEccCcccc
Q 040925 159 GTATDLDFVTFLTNCSSLKALSLADNQFGGELPHSIANLSST--------------------------VINFGIGRNQIS 212 (833)
Q Consensus 159 ~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~--------------------------l~~L~l~~n~i~ 212 (833)
++. ..+.++++|++|+|++|++++.+|..+.++... ++.|++++|+++
T Consensus 334 ip~------~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~ 407 (768)
T 3rgz_A 334 LPM------DTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFT 407 (768)
T ss_dssp CCH------HHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEE
T ss_pred CCH------HHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccc
Confidence 332 237788999999999999998899888877533 445555555555
Q ss_pred ccCChhhhcCCCCCeEeccCCcccccCCccccCCCCCCEEEcccccCcccCCccccCCCCCCeEEeecccccCCCCCCCC
Q 040925 213 GTIPPGIRNLVNLIGFGAEENQLHGTIPDAIGELKNLQKLCLFRNFLQGRIPSGLGNLTKLANLELSSNSLQGNIPSSLG 292 (833)
Q Consensus 213 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 292 (833)
+.+|..|.++++|+.|++++|++++.+|..|..+++|++|+|++|.+++.+|..|..+++|++|+|++|++++.+|..|.
T Consensus 408 ~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~ 487 (768)
T 3rgz_A 408 GKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLS 487 (768)
T ss_dssp EECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGG
T ss_pred cccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHh
Confidence 56666777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred CCCccceeecCCceecccCCcccccccccceeeecCCCccCCCCCcccccCCCcCEEeccCCcCCCCCCcc---------
Q 040925 293 NCQNLMSFTASQNKLTGALPHQLLSITTLSLYLDLSNNLLNGSLPLQVGHLKNLVILDISSNQFSGVIPGT--------- 363 (833)
Q Consensus 293 ~l~~L~~L~l~~N~l~~~~p~~~~~~~~ll~~L~ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~--------- 363 (833)
++++|+.|++++|++++.+|..+..+..+ ++|++++|.+++.+|..++.+++|+.|++++|++++.+|..
T Consensus 488 ~l~~L~~L~L~~N~l~~~~p~~~~~l~~L-~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~ 566 (768)
T 3rgz_A 488 NCTNLNWISLSNNRLTGEIPKWIGRLENL-AILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIA 566 (768)
T ss_dssp GCTTCCEEECCSSCCCSCCCGGGGGCTTC-CEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBC
T ss_pred cCCCCCEEEccCCccCCcCChHHhcCCCC-CEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhh
Confidence 77777777777777777777777777766 67777777777777777777777777777777776555543
Q ss_pred -------------------------------------------------------------ccCCCCCcEEeecCCcccc
Q 040925 364 -------------------------------------------------------------LSTCVCLEYLDISSNSFHG 382 (833)
Q Consensus 364 -------------------------------------------------------------~~~l~~L~~L~Ls~N~l~~ 382 (833)
|..+++|+.|+|++|++++
T Consensus 567 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g 646 (768)
T 3rgz_A 567 ANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSG 646 (768)
T ss_dssp CSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBS
T ss_pred hhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccc
Confidence 2334667778888888887
Q ss_pred ccCccccCCCCCCeEEccCcccCCCchhhhcCCCCCceEECccCcCccccCCC-CccCCCccccccCCcCCCCCcc
Q 040925 383 VIPLSLSFLKSIKELNVSSNNLSGQIPEFLKNLSVLEFLSLSYNHFEGEVPTK-GVFSNKTKISLQGNMKLCGGID 457 (833)
Q Consensus 383 ~~~~~~~~l~~L~~L~l~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~-~~~~~~~~l~l~~N~~~c~~~~ 457 (833)
.+|..++.++.|+.|+|++|++++.+|..++++++|+.|||++|++++.+|.. +.+..++.+++++|+ +.|.+|
T Consensus 647 ~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~-l~g~iP 721 (768)
T 3rgz_A 647 YIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNN-LSGPIP 721 (768)
T ss_dssp CCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSE-EEEECC
T ss_pred cCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCc-ccccCC
Confidence 88888888888888888888888888888888888888888888888777754 566777788888775 344444
No 3
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=1.9e-54 Score=505.87 Aligned_cols=451 Identities=22% Similarity=0.227 Sum_probs=397.2
Q ss_pred CcEEEcCCCcCcccCCccccCCCCCCEEEccCCcccccCCccCCCCCCCCEEEcCCCcccccCCccccCCCCCcEEECCC
Q 040925 1 LQTLAVNDNYLTGQLPDFVGNLSDLEVIRIMGNSLGGKIPTTLGLLRNLVSLNVAENKFSGMFPRSICNISSLELIQLAL 80 (833)
Q Consensus 1 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~ 80 (833)
+++|+|++|.++++.|.+|+++++|++|+|++|++++..|.+|+.+++|++|+|++|++++..|.+|+++++|++|+|++
T Consensus 35 l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 114 (606)
T 3t6q_A 35 TECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQ 114 (606)
T ss_dssp CCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTT
T ss_pred CcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccc
Confidence 58899999999988899999999999999999999998999999999999999999999988899999999999999999
Q ss_pred cccccccCchhhcCCCCccEEEccCCcceeeCCccccCCCCCcEEEcccCccccccCcCccCCCcCc--eEecccccCCC
Q 040925 81 NRFSGNLPFDIVVNLPNLKALAIGGNNFFGSIPYSLSNASNLELLDLSVNQFKGNVSIDFSSLKNLL--WLNLEQNNLGT 158 (833)
Q Consensus 81 N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~--~L~L~~N~l~~ 158 (833)
|+++ .+++..|.++++|++|+|++|.+++..+..+..+++|++|+|++|+++++.+..|..+++|+ .|++++|.++.
T Consensus 115 n~i~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~ 193 (606)
T 3t6q_A 115 TGIS-SIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAG 193 (606)
T ss_dssp SCCS-CGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCE
T ss_pred cCcc-cCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCc
Confidence 9998 67666788999999999999999875545566699999999999999988888899999988 88888888876
Q ss_pred CCCCCccc---------------------------------------------------------------------ccc
Q 040925 159 GTATDLDF---------------------------------------------------------------------VTF 169 (833)
Q Consensus 159 ~~~~~~~~---------------------------------------------------------------------~~~ 169 (833)
+++..+.. +..
T Consensus 194 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~ 273 (606)
T 3t6q_A 194 IEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNT 273 (606)
T ss_dssp ECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTT
T ss_pred cChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHH
Confidence 65543221 122
Q ss_pred cCCCCCCCEEEccCCcCcccCChhHhhhcccccEEEccCccccccCChhhhcCCCCCeEeccCCcccccCC-ccccCCCC
Q 040925 170 LTNCSSLKALSLADNQFGGELPHSIANLSSTVINFGIGRNQISGTIPPGIRNLVNLIGFGAEENQLHGTIP-DAIGELKN 248 (833)
Q Consensus 170 l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~ 248 (833)
|.++++|++|++++|+++ .+|..+..+. .++.|++++|.+++..|..+.++++|+.|++++|.+.+.+| ..|..+++
T Consensus 274 ~~~l~~L~~L~l~~n~l~-~lp~~l~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~ 351 (606)
T 3t6q_A 274 FHCFSGLQELDLTATHLS-ELPSGLVGLS-TLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLEN 351 (606)
T ss_dssp TTTCTTCSEEECTTSCCS-CCCSSCCSCT-TCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTT
T ss_pred hccccCCCEEeccCCccC-CCChhhcccc-cCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCc
Confidence 677889999999999998 7888877765 48899999999998888999999999999999999885554 55899999
Q ss_pred CCEEEcccccCcccC--CccccCCCCCCeEEeecccccCCCCCCCCCCCccceeecCCceecccCCcc-cccccccceee
Q 040925 249 LQKLCLFRNFLQGRI--PSGLGNLTKLANLELSSNSLQGNIPSSLGNCQNLMSFTASQNKLTGALPHQ-LLSITTLSLYL 325 (833)
Q Consensus 249 L~~L~L~~N~l~~~~--~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~-~~~~~~ll~~L 325 (833)
|++|++++|.+++.. +..+.++++|++|++++|++.+..|..|..+++|+.|++++|++++..|.. +..+..+ +.|
T Consensus 352 L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L-~~L 430 (606)
T 3t6q_A 352 LRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLL-KVL 430 (606)
T ss_dssp CCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTC-CEE
T ss_pred CCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccC-CEE
Confidence 999999999998765 778999999999999999999888999999999999999999998766655 5566666 889
Q ss_pred ecCCCccCCCCCcccccCCCcCEEeccCCcCCC---CCCccccCCCCCcEEeecCCccccccCccccCCCCCCeEEccCc
Q 040925 326 DLSNNLLNGSLPLQVGHLKNLVILDISSNQFSG---VIPGTLSTCVCLEYLDISSNSFHGVIPLSLSFLKSIKELNVSSN 402 (833)
Q Consensus 326 ~ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~---~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N 402 (833)
++++|.+++..|..|..+++|++|++++|++++ ..+..+..+++|++|+|++|++++..|..|..+++|+.|+|++|
T Consensus 431 ~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 510 (606)
T 3t6q_A 431 NLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHN 510 (606)
T ss_dssp ECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred ECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCC
Confidence 999999998889999999999999999999986 23467999999999999999999999999999999999999999
Q ss_pred ccCCCchhhhcCCCCCceEECccCcCccccCCC-CccCCCccccccCCcCCCCCc
Q 040925 403 NLSGQIPEFLKNLSVLEFLSLSYNHFEGEVPTK-GVFSNKTKISLQGNMKLCGGI 456 (833)
Q Consensus 403 ~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~-~~~~~~~~l~l~~N~~~c~~~ 456 (833)
++++..|..+.+++.| .|++++|++++.+|.. +.+..++.+++++|||.|...
T Consensus 511 ~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 564 (606)
T 3t6q_A 511 RLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCS 564 (606)
T ss_dssp CCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGG
T ss_pred ccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCC
Confidence 9999999999999999 9999999999887764 567888999999999998553
No 4
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=1.2e-52 Score=490.67 Aligned_cols=446 Identities=21% Similarity=0.183 Sum_probs=376.9
Q ss_pred CcEEEcCCCcCcccCCccccCCCCCCEEEccCCcccccCCccCCCCCCCCEEEcCCCcccccCCccccCCCCCcEEECCC
Q 040925 1 LQTLAVNDNYLTGQLPDFVGNLSDLEVIRIMGNSLGGKIPTTLGLLRNLVSLNVAENKFSGMFPRSICNISSLELIQLAL 80 (833)
Q Consensus 1 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~ 80 (833)
|++|+|++|++++..+.+|.++++|++|++++|++++..|.+|+.+++|++|+|++|++++..|.+|+++++|++|+|++
T Consensus 34 l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~ 113 (606)
T 3vq2_A 34 TKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVE 113 (606)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTT
T ss_pred cCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccC
Confidence 68999999999988888999999999999999999988899999999999999999999988899999999999999999
Q ss_pred cccccccCchhhcCCCCccEEEccCCccee-eCCccccCCCCCcEEEcccCccccccCcCccCCCcCc----eEeccccc
Q 040925 81 NRFSGNLPFDIVVNLPNLKALAIGGNNFFG-SIPYSLSNASNLELLDLSVNQFKGNVSIDFSSLKNLL----WLNLEQNN 155 (833)
Q Consensus 81 N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~----~L~L~~N~ 155 (833)
|+++ .+++..|.++++|++|+|++|.+++ .+|..|+++++|++|+|++|+++++.+..|..+++|+ +|++++|.
T Consensus 114 n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~ 192 (606)
T 3vq2_A 114 TKLA-SLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNP 192 (606)
T ss_dssp SCCC-CSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCC
T ss_pred Cccc-cccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCC
Confidence 9998 7776778999999999999999986 4699999999999999999999999888888877765 68888888
Q ss_pred CCCCCCCCccc---------------------------------------------------------------------
Q 040925 156 LGTGTATDLDF--------------------------------------------------------------------- 166 (833)
Q Consensus 156 l~~~~~~~~~~--------------------------------------------------------------------- 166 (833)
++.++...+..
T Consensus 193 l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~ 272 (606)
T 3vq2_A 193 IDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTN 272 (606)
T ss_dssp CCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCT
T ss_pred cceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccc
Confidence 87655432210
Q ss_pred -----ccccCCCCCCCEEEccCCcCcccCChhHhhhcccccEEEccCccccccCChhhhcCCCCCeEeccCCcccccCCc
Q 040925 167 -----VTFLTNCSSLKALSLADNQFGGELPHSIANLSSTVINFGIGRNQISGTIPPGIRNLVNLIGFGAEENQLHGTIPD 241 (833)
Q Consensus 167 -----~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 241 (833)
...+..+++|+.|++++|.+. .+| .+..+ ..++.|++++|++ +.+| .+ .+++|+.|++++|+..+..
T Consensus 273 ~~~~~~~~~~~l~~L~~L~l~~~~~~-~l~-~l~~~-~~L~~L~l~~n~l-~~lp-~~-~l~~L~~L~l~~n~~~~~~-- 344 (606)
T 3vq2_A 273 DFSDDIVKFHCLANVSAMSLAGVSIK-YLE-DVPKH-FKWQSLSIIRCQL-KQFP-TL-DLPFLKSLTLTMNKGSISF-- 344 (606)
T ss_dssp TCCGGGGSCGGGTTCSEEEEESCCCC-CCC-CCCTT-CCCSEEEEESCCC-SSCC-CC-CCSSCCEEEEESCSSCEEC--
T ss_pred cccccccccccCCCCCEEEecCccch-hhh-hcccc-ccCCEEEcccccC-cccc-cC-CCCccceeeccCCcCccch--
Confidence 000233455555555555554 344 33333 2467777777777 4555 44 7777888888887554333
Q ss_pred cccCCCCCCEEEcccccCccc--CCccccCCCCCCeEEeecccccCCCCCCCCCCCccceeecCCceecccCC-cccccc
Q 040925 242 AIGELKNLQKLCLFRNFLQGR--IPSGLGNLTKLANLELSSNSLQGNIPSSLGNCQNLMSFTASQNKLTGALP-HQLLSI 318 (833)
Q Consensus 242 ~~~~l~~L~~L~L~~N~l~~~--~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p-~~~~~~ 318 (833)
.+..+++|++|+|++|.+++. .|..+..+++|++|+|++|.+.+ +|..|..+++|+.|++++|++.+..| ..+..+
T Consensus 345 ~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l 423 (606)
T 3vq2_A 345 KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSL 423 (606)
T ss_dssp CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTC
T ss_pred hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhcc
Confidence 677889999999999999866 37888999999999999999984 66889999999999999999997766 566677
Q ss_pred cccceeeecCCCccCCCCCcccccCCCcCEEeccCCcCCC-CCCccccCCCCCcEEeecCCccccccCccccCCCCCCeE
Q 040925 319 TTLSLYLDLSNNLLNGSLPLQVGHLKNLVILDISSNQFSG-VIPGTLSTCVCLEYLDISSNSFHGVIPLSLSFLKSIKEL 397 (833)
Q Consensus 319 ~~ll~~L~ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 397 (833)
..+ ++|++++|.+++..|..|.++++|++|++++|.+++ ..|..|..+++|++|+|++|++++..|..|..+++|+.|
T Consensus 424 ~~L-~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 502 (606)
T 3vq2_A 424 EKL-LYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLL 502 (606)
T ss_dssp TTC-CEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred ccC-CEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEE
Confidence 777 899999999998899999999999999999999987 478999999999999999999999999999999999999
Q ss_pred EccCcccCCCchhhhcCCCCCceEECccCcCccccCCCCccC-CCccccccCCcCCCCCcc
Q 040925 398 NVSSNNLSGQIPEFLKNLSVLEFLSLSYNHFEGEVPTKGVFS-NKTKISLQGNMKLCGGID 457 (833)
Q Consensus 398 ~l~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~-~~~~l~l~~N~~~c~~~~ 457 (833)
++++|++++..|..+..+++|+.|++++|+++..++....+. .++.+++.+|||.|....
T Consensus 503 ~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~p~~~~~l~~~L~~l~l~~N~~~c~c~~ 563 (606)
T 3vq2_A 503 NMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVACICEH 563 (606)
T ss_dssp ECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCCEESCGGGSCTTCCEEECCSCCCCCSSTT
T ss_pred ECCCCcCCCcCHHHccCCCcCCEEECCCCcCcccCHhHhhhcccCcEEEccCCCcccCCcc
Confidence 999999999999999999999999999999998777666665 589999999999997654
No 5
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=6.6e-53 Score=509.04 Aligned_cols=449 Identities=20% Similarity=0.202 Sum_probs=358.4
Q ss_pred CcEEEcCCCcCcccCCccccCCCCCCEEEccCCcccc-cCCccCCCCCCCCEEEcCCCcccccCCccccCCCCCcEEECC
Q 040925 1 LQTLAVNDNYLTGQLPDFVGNLSDLEVIRIMGNSLGG-KIPTTLGLLRNLVSLNVAENKFSGMFPRSICNISSLELIQLA 79 (833)
Q Consensus 1 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~ 79 (833)
|++|+|++|.+++..|.+|.++++|++|+|++|...+ +.|.+|+.+++|++|+|++|+|++..|.+|.++++|++|+|+
T Consensus 26 l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls 105 (844)
T 3j0a_A 26 TERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLY 105 (844)
T ss_dssp CCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECT
T ss_pred cCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCc
Confidence 6899999999999999999999999999999995544 448999999999999999999999999999999999999999
Q ss_pred CcccccccCc-hhhcCCCCccEEEccCCcceeeCC-ccccCCCCCcEEEcccCccccccCcCccCC--CcCceEeccccc
Q 040925 80 LNRFSGNLPF-DIVVNLPNLKALAIGGNNFFGSIP-YSLSNASNLELLDLSVNQFKGNVSIDFSSL--KNLLWLNLEQNN 155 (833)
Q Consensus 80 ~N~l~~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l--~~L~~L~L~~N~ 155 (833)
+|.+++.+|. ..|.++++|++|+|++|.+++..+ ..|+++++|++|+|++|+++++.+..|..+ ++|+.|+|++|.
T Consensus 106 ~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~ 185 (844)
T 3j0a_A 106 FCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANS 185 (844)
T ss_dssp TCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSB
T ss_pred CCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCc
Confidence 9999865554 468899999999999999987655 579999999999999999999988899888 899999999998
Q ss_pred CCCCCCCCcccc-cccCCCCCCCEEEccCCcCcccCChhHhhh-------------------------------------
Q 040925 156 LGTGTATDLDFV-TFLTNCSSLKALSLADNQFGGELPHSIANL------------------------------------- 197 (833)
Q Consensus 156 l~~~~~~~~~~~-~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l------------------------------------- 197 (833)
+.......+... ..+.+ .+|++|+|++|++++..|..+...
T Consensus 186 l~~~~~~~~~~~~~~~~~-~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~ 264 (844)
T 3j0a_A 186 LYSRVSVDWGKCMNPFRN-MVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLA 264 (844)
T ss_dssp SCCCCCCCCCSSSCTTTT-CCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTT
T ss_pred cccccccchhhcCCcccc-CceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccc
Confidence 876443221100 01111 248888888888877766655532
Q ss_pred cccccEEEccCccccccCChhhhcCCCCCeEeccCCcccccCCccccCCCCCCEEEcccccCcccCCccccCCCCCCeEE
Q 040925 198 SSTVINFGIGRNQISGTIPPGIRNLVNLIGFGAEENQLHGTIPDAIGELKNLQKLCLFRNFLQGRIPSGLGNLTKLANLE 277 (833)
Q Consensus 198 ~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 277 (833)
...++.|++++|.+.+..+..|..+++|+.|+|++|++.++.|.+|.++++|++|+|++|.+++..|..|.++++|+.|+
T Consensus 265 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 344 (844)
T 3j0a_A 265 RSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYID 344 (844)
T ss_dssp TSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEE
T ss_pred cCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEE
Confidence 14578888888888888888888888888888888888888888888888888888888888877788888888888888
Q ss_pred eecccccCCCCCCCCCCCccceeecCCceecccCCc-------------------c----------------------cc
Q 040925 278 LSSNSLQGNIPSSLGNCQNLMSFTASQNKLTGALPH-------------------Q----------------------LL 316 (833)
Q Consensus 278 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~-------------------~----------------------~~ 316 (833)
|++|++.+..+..|.++++|+.|++++|.+++ ++. . +.
T Consensus 345 L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~-i~~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~ 423 (844)
T 3j0a_A 345 LQKNHIAIIQDQTFKFLEKLQTLDLRDNALTT-IHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLL 423 (844)
T ss_dssp CCSCCCCCCCSSCSCSCCCCCEEEEETCCSCC-CSSCCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTTHHHHT
T ss_pred CCCCCCCccChhhhcCCCCCCEEECCCCCCCc-ccCCCCcchhccCCCCcccccccccccceeecccCccccCchhhhhh
Confidence 88888887777788888888888888888763 221 1 11
Q ss_pred cccccceeeecCCCccCCCCCc-ccccCCCcCEEeccCCcCC-----CCCCccccCCCCCcEEeecCCccccccCccccC
Q 040925 317 SITTLSLYLDLSNNLLNGSLPL-QVGHLKNLVILDISSNQFS-----GVIPGTLSTCVCLEYLDISSNSFHGVIPLSLSF 390 (833)
Q Consensus 317 ~~~~ll~~L~ls~N~l~~~~~~-~~~~l~~L~~L~ls~N~l~-----~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 390 (833)
.++.+ +.|+|++|++++..+. .+..+++|+.|+|++|.++ +..+..|.++++|+.|+|++|+|++.+|..|..
T Consensus 424 ~l~~L-~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 502 (844)
T 3j0a_A 424 RVPHL-QILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSH 502 (844)
T ss_dssp TCTTC-CEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSS
T ss_pred cCCcc-ceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccc
Confidence 22333 4555555555543322 2444566666666666665 334456788888999999999998888888889
Q ss_pred CCCCCeEEccCcccCCCchhhhcCCCCCceEECccCcCccccCCCCccCCCccccccCCcCCCCCc
Q 040925 391 LKSIKELNVSSNNLSGQIPEFLKNLSVLEFLSLSYNHFEGEVPTKGVFSNKTKISLQGNMKLCGGI 456 (833)
Q Consensus 391 l~~L~~L~l~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~l~l~~N~~~c~~~ 456 (833)
+++|+.|+|++|+|++..|..+. ++|+.|||++|++++.+|.. +.++..+++.+|||.|.+.
T Consensus 503 l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~--~~~L~~l~l~~Np~~C~c~ 564 (844)
T 3j0a_A 503 LTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDV--FVSLSVLDITHNKFICECE 564 (844)
T ss_dssp CCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCC--CSSCCEEEEEEECCCCSSS
T ss_pred hhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhH--hCCcCEEEecCCCcccccc
Confidence 99999999999999887777666 78999999999999888754 6788999999999999665
No 6
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=3.4e-52 Score=493.54 Aligned_cols=454 Identities=21% Similarity=0.193 Sum_probs=295.8
Q ss_pred CcEEEcCCCcCcccCCccccCCCCCCEEEccCCcccccCCccCCCCCCCCEEEcCCCcccccCCccccCCCCCcEEECCC
Q 040925 1 LQTLAVNDNYLTGQLPDFVGNLSDLEVIRIMGNSLGGKIPTTLGLLRNLVSLNVAENKFSGMFPRSICNISSLELIQLAL 80 (833)
Q Consensus 1 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~ 80 (833)
|++|+|++|.+++..+.+|.++++|++|++++|++++..|..|+.+++|++|+|++|+++++.+.+|+++++|++|+|++
T Consensus 27 l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~ 106 (680)
T 1ziw_A 27 ITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMS 106 (680)
T ss_dssp CSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCS
T ss_pred CcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCC
Confidence 58899999999987777899999999999999999998899999999999999999999977777899999999999999
Q ss_pred cccccccCchhhcCCCCccEEEccCCcceeeCCccccCCCCCcEEEcccCccccccCcCcc--CCCcCceEecccccCCC
Q 040925 81 NRFSGNLPFDIVVNLPNLKALAIGGNNFFGSIPYSLSNASNLELLDLSVNQFKGNVSIDFS--SLKNLLWLNLEQNNLGT 158 (833)
Q Consensus 81 N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~--~l~~L~~L~L~~N~l~~ 158 (833)
|+++ .+++..|.++++|++|+|++|.+++..|..|.++++|++|+|++|+++++.+..|. .+++|++|+|++|.++.
T Consensus 107 n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~ 185 (680)
T 1ziw_A 107 NSIQ-KIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKE 185 (680)
T ss_dssp SCCC-CCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCC
T ss_pred CccC-ccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccc
Confidence 9998 78878889999999999999999988888999999999999999999988877654 55899999999999887
Q ss_pred CCCCCcccccccC---------------------CCCCCCEEEccCCcCcccCChhHhhhcc-cccEEEccCccccccCC
Q 040925 159 GTATDLDFVTFLT---------------------NCSSLKALSLADNQFGGELPHSIANLSS-TVINFGIGRNQISGTIP 216 (833)
Q Consensus 159 ~~~~~~~~~~~l~---------------------~l~~L~~L~Ls~N~l~~~~p~~~~~l~~-~l~~L~l~~n~i~~~~~ 216 (833)
+.+..+.....+. ..++|+.|++++|++++..|..+..+.. .++.|++++|++++..+
T Consensus 186 ~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~ 265 (680)
T 1ziw_A 186 FSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGN 265 (680)
T ss_dssp BCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECT
T ss_pred cChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCc
Confidence 6654332111110 1144555555555555555555444431 35555555555555555
Q ss_pred hhhhcCCCCCeEeccCCcccccCCcc---------------------------------ccCCCCCCEEEcccccCcccC
Q 040925 217 PGIRNLVNLIGFGAEENQLHGTIPDA---------------------------------IGELKNLQKLCLFRNFLQGRI 263 (833)
Q Consensus 217 ~~~~~l~~L~~L~L~~N~l~~~~~~~---------------------------------~~~l~~L~~L~L~~N~l~~~~ 263 (833)
..|..+++|++|++++|++.+..|.. |..+++|++|++++|.+++..
T Consensus 266 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~ 345 (680)
T 1ziw_A 266 DSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIK 345 (680)
T ss_dssp TTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCC
T ss_pred ccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCC
Confidence 55555555555555555444433322 223334444444444444444
Q ss_pred CccccCCCCCCeEEeec----------------------------ccccCCCCCCCCCCCccceeecCCceecccCC---
Q 040925 264 PSGLGNLTKLANLELSS----------------------------NSLQGNIPSSLGNCQNLMSFTASQNKLTGALP--- 312 (833)
Q Consensus 264 ~~~~~~l~~L~~L~L~~----------------------------N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p--- 312 (833)
+..|.++++|++|+|++ |++++..|.+|..+++|+.|++++|++++.+|
T Consensus 346 ~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 425 (680)
T 1ziw_A 346 SNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQE 425 (680)
T ss_dssp TTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGG
T ss_pred hhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCccc
Confidence 44444443333333322 23333334444555555555555555443333
Q ss_pred ------------------------------------------------cccccccccceeeecCCCccCCCCCcccccCC
Q 040925 313 ------------------------------------------------HQLLSITTLSLYLDLSNNLLNGSLPLQVGHLK 344 (833)
Q Consensus 313 ------------------------------------------------~~~~~~~~ll~~L~ls~N~l~~~~~~~~~~l~ 344 (833)
..+..+..+ ++|++++|+++++.+..|.+++
T Consensus 426 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L-~~L~Ls~N~l~~i~~~~~~~l~ 504 (680)
T 1ziw_A 426 WRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNL-TILDLSNNNIANINDDMLEGLE 504 (680)
T ss_dssp GTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTC-CEEECCSSCCCCCCTTTTTTCT
T ss_pred ccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCC-CEEECCCCCCCcCChhhhcccc
Confidence 222222333 4455555555544444455555
Q ss_pred CcCEEeccCCcCCCCCC--------ccccCCCCCcEEeecCCccccccCccccCCCCCCeEEccCcccCCCchhhhcCCC
Q 040925 345 NLVILDISSNQFSGVIP--------GTLSTCVCLEYLDISSNSFHGVIPLSLSFLKSIKELNVSSNNLSGQIPEFLKNLS 416 (833)
Q Consensus 345 ~L~~L~ls~N~l~~~~~--------~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~l~~l~ 416 (833)
+|++|++++|++++..+ ..|.++++|++|+|++|+++.+++..|..+++|+.|+|++|++++..+..|..++
T Consensus 505 ~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~ 584 (680)
T 1ziw_A 505 KLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQV 584 (680)
T ss_dssp TCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred ccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCC
Confidence 55555555555543211 1245555555666666666544445566677777777777777766666667777
Q ss_pred CCceEECccCcCccccCCC-C-ccCCCccccccCCcCCCCCc
Q 040925 417 VLEFLSLSYNHFEGEVPTK-G-VFSNKTKISLQGNMKLCGGI 456 (833)
Q Consensus 417 ~L~~L~l~~N~l~~~~~~~-~-~~~~~~~l~l~~N~~~c~~~ 456 (833)
+|+.|++++|.+++.++.. + .+.+++.+++++|||.|...
T Consensus 585 ~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~ 626 (680)
T 1ziw_A 585 SLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCE 626 (680)
T ss_dssp TCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCC
T ss_pred CCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCc
Confidence 7777777777777665542 2 46788889999999999764
No 7
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=7.4e-52 Score=483.98 Aligned_cols=424 Identities=21% Similarity=0.184 Sum_probs=373.7
Q ss_pred CcEEEcCCCcCcccCCccccCCCCCCEEEccCCcccccCCccCCCCCCCCEEEcCCCcccccCCccccCCCCCcEEECCC
Q 040925 1 LQTLAVNDNYLTGQLPDFVGNLSDLEVIRIMGNSLGGKIPTTLGLLRNLVSLNVAENKFSGMFPRSICNISSLELIQLAL 80 (833)
Q Consensus 1 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~ 80 (833)
|++|+|++|+++++.|++|.++++|++|+|++|++++..|..|+.+++|++|+|++|+++++.|..|.++++|++|+|++
T Consensus 59 L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~ 138 (606)
T 3t6q_A 59 LTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGS 138 (606)
T ss_dssp CSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCS
T ss_pred ceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCC
Confidence 68999999999988899999999999999999999888899999999999999999999987788899999999999999
Q ss_pred cccccccCchhhcCCCCccEEEccCCcceeeCCccccCCCCCc--EEEcccCcccccc----------------------
Q 040925 81 NRFSGNLPFDIVVNLPNLKALAIGGNNFFGSIPYSLSNASNLE--LLDLSVNQFKGNV---------------------- 136 (833)
Q Consensus 81 N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~--~L~L~~N~i~~~~---------------------- 136 (833)
|+++ .++...+.++++|++|+|++|.+++..|..|+.+++|+ .|++++|+++++.
T Consensus 139 n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~ 217 (606)
T 3t6q_A 139 NHIS-SIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLV 217 (606)
T ss_dssp SCCC-CCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHH
T ss_pred Cccc-ccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhHhhhccccccccCCchhHHH
Confidence 9997 55433445688888888888888877777777777777 6666666655444
Q ss_pred -----------------------------------------------------CcCccCCCcCceEecccccCCCCCCCC
Q 040925 137 -----------------------------------------------------SIDFSSLKNLLWLNLEQNNLGTGTATD 163 (833)
Q Consensus 137 -----------------------------------------------------~~~~~~l~~L~~L~L~~N~l~~~~~~~ 163 (833)
+..|..+++|++|+|++|.++.++
T Consensus 218 ~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp--- 294 (606)
T 3t6q_A 218 IFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELP--- 294 (606)
T ss_dssp HHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCC---
T ss_pred HhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccCCCC---
Confidence 344667788888888888887654
Q ss_pred cccccccCCCCCCCEEEccCCcCcccCChhHhhhcccccEEEccCccccccCC-hhhhcCCCCCeEeccCCcccccC--C
Q 040925 164 LDFVTFLTNCSSLKALSLADNQFGGELPHSIANLSSTVINFGIGRNQISGTIP-PGIRNLVNLIGFGAEENQLHGTI--P 240 (833)
Q Consensus 164 ~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~l~~L~l~~n~i~~~~~-~~~~~l~~L~~L~L~~N~l~~~~--~ 240 (833)
..+.++++|++|++++|++++..|..+..++ .++.|++++|.+.+..+ ..+.++++|++|++++|++.+.. +
T Consensus 295 ----~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 369 (606)
T 3t6q_A 295 ----SGLVGLSTLKKLVLSANKFENLCQISASNFP-SLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCN 369 (606)
T ss_dssp ----SSCCSCTTCCEEECTTCCCSBGGGGCGGGCT-TCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEEST
T ss_pred ----hhhcccccCCEEECccCCcCcCchhhhhccC-cCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcc
Confidence 3478899999999999999987788888875 48999999999986555 45999999999999999999876 7
Q ss_pred ccccCCCCCCEEEcccccCcccCCccccCCCCCCeEEeecccccCCCCC-CCCCCCccceeecCCceecccCCccccccc
Q 040925 241 DAIGELKNLQKLCLFRNFLQGRIPSGLGNLTKLANLELSSNSLQGNIPS-SLGNCQNLMSFTASQNKLTGALPHQLLSIT 319 (833)
Q Consensus 241 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~ 319 (833)
..|..+++|++|++++|.+.+..|..|..+++|++|++++|++.+..+. .|..+++|+.|++++|.+++..|..+..++
T Consensus 370 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 449 (606)
T 3t6q_A 370 LQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLP 449 (606)
T ss_dssp TTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCT
T ss_pred hhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCC
Confidence 8899999999999999999999999999999999999999999977654 499999999999999999977788888888
Q ss_pred ccceeeecCCCccCC---CCCcccccCCCcCEEeccCCcCCCCCCccccCCCCCcEEeecCCccccccCccccCCCCCCe
Q 040925 320 TLSLYLDLSNNLLNG---SLPLQVGHLKNLVILDISSNQFSGVIPGTLSTCVCLEYLDISSNSFHGVIPLSLSFLKSIKE 396 (833)
Q Consensus 320 ~ll~~L~ls~N~l~~---~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 396 (833)
.+ ++|++++|.+++ ..+..+..+++|++|++++|++++..|..|..+++|++|+|++|++++..|..+..++.| .
T Consensus 450 ~L-~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~ 527 (606)
T 3t6q_A 450 AL-QHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-Y 527 (606)
T ss_dssp TC-CEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-E
T ss_pred CC-CEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-E
Confidence 87 899999999986 234679999999999999999999999999999999999999999999999999999999 9
Q ss_pred EEccCcccCCCchhhhcCCCCCceEECccCcCccccCCC
Q 040925 397 LNVSSNNLSGQIPEFLKNLSVLEFLSLSYNHFEGEVPTK 435 (833)
Q Consensus 397 L~l~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~ 435 (833)
|++++|++++.+|..+..+++|+.|++++|+|+|.|+..
T Consensus 528 L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~~ 566 (606)
T 3t6q_A 528 LNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSNI 566 (606)
T ss_dssp EECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGGGH
T ss_pred EECcCCcccccCHhhcccCCCCCEEeCCCCCccccCCcH
Confidence 999999999999999999999999999999999998853
No 8
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=6.3e-50 Score=474.07 Aligned_cols=432 Identities=21% Similarity=0.237 Sum_probs=326.4
Q ss_pred CcEEEcCCCcCcccCCccccCCCCCCEEEccCCcccccCCccCCCCCCCCEEEcCCCcccccCCccccCCCCCcEEECCC
Q 040925 1 LQTLAVNDNYLTGQLPDFVGNLSDLEVIRIMGNSLGGKIPTTLGLLRNLVSLNVAENKFSGMFPRSICNISSLELIQLAL 80 (833)
Q Consensus 1 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~ 80 (833)
|++|+|++|.+++..+.+|+++++|++|++++|++++..|..|+.+++|++|+|++|.+++..|..|.++++|++|++++
T Consensus 75 L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 154 (680)
T 1ziw_A 75 LKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSN 154 (680)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCS
T ss_pred cCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccC
Confidence 56677777777754445677777777777777777666666777777777777777777766677777777777777777
Q ss_pred cccccccCchhhc--CCCCccEEEccCCcceeeCCc--------------------------------------------
Q 040925 81 NRFSGNLPFDIVV--NLPNLKALAIGGNNFFGSIPY-------------------------------------------- 114 (833)
Q Consensus 81 N~l~~~~~~~~~~--~l~~L~~L~L~~N~l~~~~~~-------------------------------------------- 114 (833)
|+++ .++...|. .+++|++|+|++|.+++..|.
T Consensus 155 n~l~-~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~ 233 (680)
T 1ziw_A 155 NKIQ-ALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQ 233 (680)
T ss_dssp SCCC-CBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSC
T ss_pred Cccc-ccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCc
Confidence 7766 34433322 334555555555554443333
Q ss_pred -------cccCCC--CCcEEEcccCccccccCcCccCCCcCceEecccccCCCCCCCCcc--------------------
Q 040925 115 -------SLSNAS--NLELLDLSVNQFKGNVSIDFSSLKNLLWLNLEQNNLGTGTATDLD-------------------- 165 (833)
Q Consensus 115 -------~~~~l~--~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~-------------------- 165 (833)
.|.+++ +|++|+|++|+++++.+..|..+++|++|+|++|+++.+.+..+.
T Consensus 234 l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~ 313 (680)
T 1ziw_A 234 LSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSIS 313 (680)
T ss_dssp CCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC---
T ss_pred ccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccc
Confidence 333332 377777777777777777777777777777777776654332211
Q ss_pred ---ccc----ccCCCCCCCEEEccCCcCcccCChhHhhhc---------------------------ccccEEEccCccc
Q 040925 166 ---FVT----FLTNCSSLKALSLADNQFGGELPHSIANLS---------------------------STVINFGIGRNQI 211 (833)
Q Consensus 166 ---~~~----~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~---------------------------~~l~~L~l~~n~i 211 (833)
.+. .|..+++|++|++++|++++..|..+.++. ..++.|++++|++
T Consensus 314 ~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l 393 (680)
T 1ziw_A 314 LASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKI 393 (680)
T ss_dssp ---CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCC
T ss_pred cccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCC
Confidence 011 355677777777788877766555554432 2456667777778
Q ss_pred cccCChhhhcCCCCCeEeccCCcccccCC-ccccCCCCCCEEEcccccCcccCCccccCCCCCCeEEeeccccc--CCCC
Q 040925 212 SGTIPPGIRNLVNLIGFGAEENQLHGTIP-DAIGELKNLQKLCLFRNFLQGRIPSGLGNLTKLANLELSSNSLQ--GNIP 288 (833)
Q Consensus 212 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~--~~~~ 288 (833)
+++.|..|.++++|+.|++++|++.+.+| ..|.++++|++|+|++|.+.+..+..|..+++|+.|++++|.+. +..|
T Consensus 394 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p 473 (680)
T 1ziw_A 394 SKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSP 473 (680)
T ss_dssp CEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSS
T ss_pred CeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCC
Confidence 77778888888888888888888876554 67888888888888888888878888888888888888888876 4678
Q ss_pred CCCCCCCccceeecCCceecccCCcccccccccceeeecCCCccCCCCC--------cccccCCCcCEEeccCCcCCCCC
Q 040925 289 SSLGNCQNLMSFTASQNKLTGALPHQLLSITTLSLYLDLSNNLLNGSLP--------LQVGHLKNLVILDISSNQFSGVI 360 (833)
Q Consensus 289 ~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~ll~~L~ls~N~l~~~~~--------~~~~~l~~L~~L~ls~N~l~~~~ 360 (833)
..|.++++|+.|++++|++++..|..+..+..+ ++|++++|.+++..+ ..|.++++|++|+|++|+++.++
T Consensus 474 ~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L-~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~ 552 (680)
T 1ziw_A 474 SPFQPLRNLTILDLSNNNIANINDDMLEGLEKL-EILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIP 552 (680)
T ss_dssp CTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC-CEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCC
T ss_pred cccccCCCCCEEECCCCCCCcCChhhhcccccc-CEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCC
Confidence 899999999999999999996555667777777 899999999986422 24789999999999999999777
Q ss_pred CccccCCCCCcEEeecCCccccccCccccCCCCCCeEEccCcccCCCchhhhc-CCCCCceEECccCcCccccCC
Q 040925 361 PGTLSTCVCLEYLDISSNSFHGVIPLSLSFLKSIKELNVSSNNLSGQIPEFLK-NLSVLEFLSLSYNHFEGEVPT 434 (833)
Q Consensus 361 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~l~-~l~~L~~L~l~~N~l~~~~~~ 434 (833)
+..|.++++|+.|+|++|+++++++..|..+++|+.|+|++|++++..|..+. .+++|+.|++++|+|.|.|+.
T Consensus 553 ~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~ 627 (680)
T 1ziw_A 553 VEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCES 627 (680)
T ss_dssp TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCC
T ss_pred HHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCcc
Confidence 78899999999999999999988888899999999999999999999998888 899999999999999999985
No 9
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=7.4e-50 Score=467.03 Aligned_cols=424 Identities=20% Similarity=0.194 Sum_probs=369.2
Q ss_pred CcEEEcCCCcCcccCCccccCCCCCCEEEccCCcccccCCccCCCCCCCCEEEcCCCcccccCCccccCCCCCcEEECCC
Q 040925 1 LQTLAVNDNYLTGQLPDFVGNLSDLEVIRIMGNSLGGKIPTTLGLLRNLVSLNVAENKFSGMFPRSICNISSLELIQLAL 80 (833)
Q Consensus 1 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~ 80 (833)
|++|+|++|+++++.|.+|.++++|++|+|++|++++..|..|+.+++|++|+|++|++++..+..|+++++|++|+|++
T Consensus 58 L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 137 (606)
T 3vq2_A 58 LQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAH 137 (606)
T ss_dssp CCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCS
T ss_pred CcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCC
Confidence 78999999999988899999999999999999999988899999999999999999999988889999999999999999
Q ss_pred ccccc-ccCchhhcCCCCccEEEccCCcceeeCCccccCCCCCc----EEEcccCccccccCcCccCCCcCceEeccccc
Q 040925 81 NRFSG-NLPFDIVVNLPNLKALAIGGNNFFGSIPYSLSNASNLE----LLDLSVNQFKGNVSIDFSSLKNLLWLNLEQNN 155 (833)
Q Consensus 81 N~l~~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~----~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~ 155 (833)
|.+++ .+| ..|.++++|++|+|++|++++..|..|+.+.+|+ +|++++|+++.+++..|... +|++|++++|.
T Consensus 138 n~l~~~~lp-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~-~L~~L~L~~n~ 215 (606)
T 3vq2_A 138 NFIHSCKLP-AYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNF 215 (606)
T ss_dssp SCCCCCCCC-GGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCC
T ss_pred Ccccceech-HhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCCcceeCcccccCc-eeeeeeccCCc
Confidence 99983 344 5678999999999999999998888888777665 78888888887777666544 56666666654
Q ss_pred CCC-------------------------------------------------------C------------------CCC
Q 040925 156 LGT-------------------------------------------------------G------------------TAT 162 (833)
Q Consensus 156 l~~-------------------------------------------------------~------------------~~~ 162 (833)
++. + ...
T Consensus 216 ~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 295 (606)
T 3vq2_A 216 NSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGV 295 (606)
T ss_dssp SCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESC
T ss_pred cchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccccccCCCCCEEEecCc
Confidence 420 0 000
Q ss_pred CcccccccCCCCCCCEEEccCCcCcccCChhHhhhcccccEEEccCccccccCChhhhcCCCCCeEeccCCcccccC--C
Q 040925 163 DLDFVTFLTNCSSLKALSLADNQFGGELPHSIANLSSTVINFGIGRNQISGTIPPGIRNLVNLIGFGAEENQLHGTI--P 240 (833)
Q Consensus 163 ~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~ 240 (833)
.+.....+..+++|++|++++|++ +.+| .+ .+ ..++.|++++|...+.. .+..+++|++|++++|++++.. |
T Consensus 296 ~~~~l~~l~~~~~L~~L~l~~n~l-~~lp-~~-~l-~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~ 369 (606)
T 3vq2_A 296 SIKYLEDVPKHFKWQSLSIIRCQL-KQFP-TL-DL-PFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCS 369 (606)
T ss_dssp CCCCCCCCCTTCCCSEEEEESCCC-SSCC-CC-CC-SSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECC
T ss_pred cchhhhhccccccCCEEEcccccC-cccc-cC-CC-CccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchh
Confidence 001112477889999999999999 5888 44 44 56899999999665443 6789999999999999999763 8
Q ss_pred ccccCCCCCCEEEcccccCcccCCccccCCCCCCeEEeecccccCCCC-CCCCCCCccceeecCCceecccCCccccccc
Q 040925 241 DAIGELKNLQKLCLFRNFLQGRIPSGLGNLTKLANLELSSNSLQGNIP-SSLGNCQNLMSFTASQNKLTGALPHQLLSIT 319 (833)
Q Consensus 241 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~ 319 (833)
..+..+++|++|+|++|.+++ +|..|.++++|+.|++++|++.+..| ..|..+++|+.|++++|++++..|..+..+.
T Consensus 370 ~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 448 (606)
T 3vq2_A 370 YSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLT 448 (606)
T ss_dssp HHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCT
T ss_pred hhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCC
Confidence 899999999999999999985 66889999999999999999998877 7899999999999999999988888888888
Q ss_pred ccceeeecCCCccCC-CCCcccccCCCcCEEeccCCcCCCCCCccccCCCCCcEEeecCCccccccCccccCCCCCCeEE
Q 040925 320 TLSLYLDLSNNLLNG-SLPLQVGHLKNLVILDISSNQFSGVIPGTLSTCVCLEYLDISSNSFHGVIPLSLSFLKSIKELN 398 (833)
Q Consensus 320 ~ll~~L~ls~N~l~~-~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 398 (833)
.+ ++|++++|.+++ ..|..|+.+++|++|++++|++++..|..|..+++|++|+|++|++++..|..|..+++|+.|+
T Consensus 449 ~L-~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 527 (606)
T 3vq2_A 449 SL-NTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLD 527 (606)
T ss_dssp TC-CEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEE
T ss_pred CC-CEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEE
Confidence 88 899999999997 4788999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCcccCCCchhhhcCCC-CCceEECccCcCccccCCC
Q 040925 399 VSSNNLSGQIPEFLKNLS-VLEFLSLSYNHFEGEVPTK 435 (833)
Q Consensus 399 l~~N~l~~~~p~~l~~l~-~L~~L~l~~N~l~~~~~~~ 435 (833)
+++|+++ .+|..+..++ +|+.|++++|+|.|.++..
T Consensus 528 l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~~~ 564 (606)
T 3vq2_A 528 CSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICEHQ 564 (606)
T ss_dssp CTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSSTTH
T ss_pred CCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCccH
Confidence 9999999 5676799987 5999999999999999864
No 10
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.2e-49 Score=462.06 Aligned_cols=439 Identities=22% Similarity=0.229 Sum_probs=338.4
Q ss_pred CcEEEcCCCcCcccCCccccCCCCCCEEEccCCcccccCCccCCCCCCCCEEEcCCCcccccCCccccCCCCCcEEECCC
Q 040925 1 LQTLAVNDNYLTGQLPDFVGNLSDLEVIRIMGNSLGGKIPTTLGLLRNLVSLNVAENKFSGMFPRSICNISSLELIQLAL 80 (833)
Q Consensus 1 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~ 80 (833)
+++|++++|.+++..+.+|.++++|++|+|++|++++..|..|+.+++|++|+|++|+++++.|.+|.++++|++|++++
T Consensus 30 l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 109 (570)
T 2z63_A 30 TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVE 109 (570)
T ss_dssp CCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTT
T ss_pred ccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccc
Confidence 57888888888877778888888888888888888887788888888888888888888877788888888888888888
Q ss_pred cccccccCchhhcCCCCccEEEccCCcceee-CCccccCCCCCcEEEcccCccccccCcCccCCCcC----ceEeccccc
Q 040925 81 NRFSGNLPFDIVVNLPNLKALAIGGNNFFGS-IPYSLSNASNLELLDLSVNQFKGNVSIDFSSLKNL----LWLNLEQNN 155 (833)
Q Consensus 81 N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L----~~L~L~~N~ 155 (833)
|+++ .++...|.++++|++|+|++|.+++. .|..|+++++|++|++++|+++++.+..|..+++| +.|++++|.
T Consensus 110 n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~ 188 (570)
T 2z63_A 110 TNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP 188 (570)
T ss_dssp SCCC-CSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCC
T ss_pred cccc-cCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCC
Confidence 8887 67766678888888888888888763 58888888888888888888888888888888888 788888888
Q ss_pred CCCCCCCCcccccccCCCCCCCEEEccCCc--------------------------------------------------
Q 040925 156 LGTGTATDLDFVTFLTNCSSLKALSLADNQ-------------------------------------------------- 185 (833)
Q Consensus 156 l~~~~~~~~~~~~~l~~l~~L~~L~Ls~N~-------------------------------------------------- 185 (833)
++.++... +..+ +|++|++++|.
T Consensus 189 l~~~~~~~------~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~ 261 (570)
T 2z63_A 189 MNFIQPGA------FKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEE 261 (570)
T ss_dssp CCEECTTT------TTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEE
T ss_pred ceecCHHH------hccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhh
Confidence 87765532 2222 56777776662
Q ss_pred --------CcccCChhHhhhcccccEEEccCccccccCChhhhcCCCCCeEeccCCcccccCCccccCCCCCCEEEcccc
Q 040925 186 --------FGGELPHSIANLSSTVINFGIGRNQISGTIPPGIRNLVNLIGFGAEENQLHGTIPDAIGELKNLQKLCLFRN 257 (833)
Q Consensus 186 --------l~~~~p~~~~~l~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 257 (833)
+.+.+|..+..+. .++.|++++|.++ .+|..+..+ +|+.|++++|.+. .+|. ..+++|++|++++|
T Consensus 262 l~l~~~~~~~~~~~~~~~~l~-~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~-~l~~--~~l~~L~~L~l~~n 335 (570)
T 2z63_A 262 FRLAYLDYYLDDIIDLFNCLT-NVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFG-QFPT--LKLKSLKRLTFTSN 335 (570)
T ss_dssp EEEEETTEEESCSTTTTGGGT-TCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCS-SCCB--CBCSSCCEEEEESC
T ss_pred hhhhcchhhhhhchhhhcCcC-cccEEEecCccch-hhhhhhccC-CccEEeeccCccc-ccCc--ccccccCEEeCcCC
Confidence 2222233333322 2455555555555 344444444 5555555555555 2222 24455666666666
Q ss_pred cCcccCCccccCCCCCCeEEeecccccCCC--CCCCCCCCccceeecCCceecccCCcccccccccceeeecCCCccCCC
Q 040925 258 FLQGRIPSGLGNLTKLANLELSSNSLQGNI--PSSLGNCQNLMSFTASQNKLTGALPHQLLSITTLSLYLDLSNNLLNGS 335 (833)
Q Consensus 258 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~ll~~L~ls~N~l~~~ 335 (833)
.+.+..+. ..+++|++|++++|++++.. |..+.++++|+.|++++|+++ .+|..+..+..+ ++|++++|.+.+.
T Consensus 336 ~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~~l~~L-~~L~l~~n~l~~~ 411 (570)
T 2z63_A 336 KGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQL-EHLDFQHSNLKQM 411 (570)
T ss_dssp BSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEE-EEEEEEETCTTC-CEEECTTSEEESC
T ss_pred cccccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccc-cccccccccCCC-CEEEccCCccccc
Confidence 55543333 56788888888888887554 667888889999999999988 455557777776 7899999999876
Q ss_pred CC-cccccCCCcCEEeccCCcCCCCCCccccCCCCCcEEeecCCccc-cccCccccCCCCCCeEEccCcccCCCchhhhc
Q 040925 336 LP-LQVGHLKNLVILDISSNQFSGVIPGTLSTCVCLEYLDISSNSFH-GVIPLSLSFLKSIKELNVSSNNLSGQIPEFLK 413 (833)
Q Consensus 336 ~~-~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~l~ 413 (833)
.+ ..|.++++|++|++++|.+++..|..|.++++|++|+|++|+++ +..|..+..+++|+.|++++|++++..|..+.
T Consensus 412 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 491 (570)
T 2z63_A 412 SEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFN 491 (570)
T ss_dssp TTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTT
T ss_pred cchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhh
Confidence 65 56888999999999999999888999999999999999999997 56788899999999999999999988899999
Q ss_pred CCCCCceEECccCcCccccCCC-CccCCCccccccCCcCCCCCcc
Q 040925 414 NLSVLEFLSLSYNHFEGEVPTK-GVFSNKTKISLQGNMKLCGGID 457 (833)
Q Consensus 414 ~l~~L~~L~l~~N~l~~~~~~~-~~~~~~~~l~l~~N~~~c~~~~ 457 (833)
.+++|+.|++++|++++.++.. ..++.++.+++++|++.|..+.
T Consensus 492 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 536 (570)
T 2z63_A 492 SLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 536 (570)
T ss_dssp TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred cccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcc
Confidence 9999999999999999887753 6678889999999999886543
No 11
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=1.8e-49 Score=479.01 Aligned_cols=428 Identities=20% Similarity=0.216 Sum_probs=356.7
Q ss_pred CcEEEcCCCcCcccC-CccccCCCCCCEEEccCCcccccCCccCCCCCCCCEEEcCCCcccccCCcc--ccCCCCCcEEE
Q 040925 1 LQTLAVNDNYLTGQL-PDFVGNLSDLEVIRIMGNSLGGKIPTTLGLLRNLVSLNVAENKFSGMFPRS--ICNISSLELIQ 77 (833)
Q Consensus 1 L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~--~~~l~~L~~L~ 77 (833)
|++|+|++|...+.+ |.+|.++++|++|+|++|++.+..|..|+.+++|++|+|++|.+++..|.. |.++++|++|+
T Consensus 50 L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~ 129 (844)
T 3j0a_A 50 LQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLD 129 (844)
T ss_dssp CSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEE
T ss_pred CeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEE
Confidence 789999999655455 889999999999999999999999999999999999999999999766665 99999999999
Q ss_pred CCCcccccccCchhhcCCCCccEEEccCCcceeeCCccccCC--CCCcEEEcccCccccccCcCccCCCc------CceE
Q 040925 78 LALNRFSGNLPFDIVVNLPNLKALAIGGNNFFGSIPYSLSNA--SNLELLDLSVNQFKGNVSIDFSSLKN------LLWL 149 (833)
Q Consensus 78 L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l--~~L~~L~L~~N~i~~~~~~~~~~l~~------L~~L 149 (833)
|++|.+++..+...|.++++|++|+|++|.+++..+..|..+ ++|+.|+|++|.+.+..+..+..+++ |+.|
T Consensus 130 Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L 209 (844)
T 3j0a_A 130 LSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEIL 209 (844)
T ss_dssp EESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEE
T ss_pred CCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEE
Confidence 999999855556788999999999999999998889999888 89999999999998877777766665 9999
Q ss_pred ecccccCCCCCCCCcc------------------------------cccccCC--CCCCCEEEccCCcCcccCChhHhhh
Q 040925 150 NLEQNNLGTGTATDLD------------------------------FVTFLTN--CSSLKALSLADNQFGGELPHSIANL 197 (833)
Q Consensus 150 ~L~~N~l~~~~~~~~~------------------------------~~~~l~~--l~~L~~L~Ls~N~l~~~~p~~~~~l 197 (833)
+|++|.++......+. ....|.+ .++|+.|+|++|.+.+..|..+..+
T Consensus 210 ~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l 289 (844)
T 3j0a_A 210 DVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETL 289 (844)
T ss_dssp BCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSC
T ss_pred ecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcC
Confidence 9999977543221110 0111222 2678889999998887777777666
Q ss_pred cccccEEEccCccccccCChhhhcCCCCCeEeccCCcccccCCccccCCCCCCEEEcccccCcccCCccccCCCCCCeEE
Q 040925 198 SSTVINFGIGRNQISGTIPPGIRNLVNLIGFGAEENQLHGTIPDAIGELKNLQKLCLFRNFLQGRIPSGLGNLTKLANLE 277 (833)
Q Consensus 198 ~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 277 (833)
. .++.|++++|+|++..+..|.++++|++|+|++|++.++.|..|.++++|++|+|++|.++++.+..|.++++|++|+
T Consensus 290 ~-~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~ 368 (844)
T 3j0a_A 290 K-DLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLD 368 (844)
T ss_dssp C-CCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEE
T ss_pred C-CCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEE
Confidence 4 478888899988888888888888899999999988888888888888899999998888877777888888888888
Q ss_pred eecccccCCC------------------CC----------------------CCCCCCccceeecCCceecccCCcc-cc
Q 040925 278 LSSNSLQGNI------------------PS----------------------SLGNCQNLMSFTASQNKLTGALPHQ-LL 316 (833)
Q Consensus 278 L~~N~l~~~~------------------~~----------------------~~~~l~~L~~L~l~~N~l~~~~p~~-~~ 316 (833)
|++|.+++.. |. .+.++++|+.|++++|++++..+.. +.
T Consensus 369 Ls~N~l~~i~~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 448 (844)
T 3j0a_A 369 LRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPS 448 (844)
T ss_dssp EETCCSCCCSSCCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSC
T ss_pred CCCCCCCcccCCCCcchhccCCCCcccccccccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccc
Confidence 8888876421 11 1336789999999999998544432 33
Q ss_pred cccccceeeecCCCccC-----CCCCcccccCCCcCEEeccCCcCCCCCCccccCCCCCcEEeecCCccccccCccccCC
Q 040925 317 SITTLSLYLDLSNNLLN-----GSLPLQVGHLKNLVILDISSNQFSGVIPGTLSTCVCLEYLDISSNSFHGVIPLSLSFL 391 (833)
Q Consensus 317 ~~~~ll~~L~ls~N~l~-----~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 391 (833)
...++ +.|++++|.++ +..+..|.++++|+.|+|++|.+++.+|..|.++++|+.|+|++|+|+++++..+.
T Consensus 449 ~~~~L-~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~-- 525 (844)
T 3j0a_A 449 ENPSL-EQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP-- 525 (844)
T ss_dssp SCTTC-CBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--
T ss_pred cCCcc-ccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--
Confidence 34444 88999999997 44556789999999999999999999999999999999999999999988887776
Q ss_pred CCCCeEEccCcccCCCchhhhcCCCCCceEECccCcCccccCCC
Q 040925 392 KSIKELNVSSNNLSGQIPEFLKNLSVLEFLSLSYNHFEGEVPTK 435 (833)
Q Consensus 392 ~~L~~L~l~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~ 435 (833)
++|+.|+|++|++++..|..+ .+|+.|++++|++.|.|+..
T Consensus 526 ~~L~~L~Ls~N~l~~~~~~~~---~~L~~l~l~~Np~~C~c~~~ 566 (844)
T 3j0a_A 526 ANLEILDISRNQLLAPNPDVF---VSLSVLDITHNKFICECELS 566 (844)
T ss_dssp SCCCEEEEEEECCCCCCSCCC---SSCCEEEEEEECCCCSSSCC
T ss_pred ccccEEECCCCcCCCCChhHh---CCcCEEEecCCCcccccccH
Confidence 899999999999999988775 47899999999999999854
No 12
>4asz_A BDNF/NT-3 growth factors receptor; transferase, TRKA, TRKB; 1.70A {Homo sapiens} PDB: 4at3_A* 4at4_A* 4at5_A* 3v5q_A*
Probab=100.00 E-value=6.2e-51 Score=424.68 Aligned_cols=265 Identities=22% Similarity=0.367 Sum_probs=211.0
Q ss_pred cCCccCceeccCcceEEEEEEEC-----CCceEEEEEEeeccCCcchhHHHHHHHHHhhcCCCccceEeeEeecCCCCCC
Q 040925 531 GEFSSSNMIGQGSFGYVYKGTLG-----EDEMIVAVKVINLKYKGASRSFVAECEALRNIRHRNLIKIITICSSTDFKGT 605 (833)
Q Consensus 531 ~~y~~~~~lg~G~~g~Vy~~~~~-----~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~ 605 (833)
++|.+.+.||+|+||+||+|++. .+++.||||+++.......++|.+|+++|++++|||||+++|+|.+.+
T Consensus 13 ~~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~~~---- 88 (299)
T 4asz_A 13 HNIVLKRELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDASDNARKDFHREAELLTNLQHEHIVKFYGVCVEGD---- 88 (299)
T ss_dssp GGEEEEEEEEC--CCCEEEEEECSCC----CEEEEEEEECSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSS----
T ss_pred HHeEEeeEEeeCCCcEEEEEEECCcccCCCCEEEEEEEeCCCChHHHHHHHHHHHHHHhCCCCCCccEEEEEeeCC----
Confidence 46888999999999999999875 357899999998665556678999999999999999999999987654
Q ss_pred ceEeEEEEecCCCChhhhhccCCC-------ccccccCCHHHHHHHHHHHHHHHHHHhhcCCCCceeeCCCCCCeeecCC
Q 040925 606 DFKAFVFEYMENGSLKDWLHQSDD-------QVEVCKLSLIQRVNIAIDVASAMEYLHHHCQPPMVHGDLKPSNVLLDHD 678 (833)
Q Consensus 606 ~~~~lv~e~~~~gsL~~~l~~~~~-------~~~~~~l~~~~~~~i~~qi~~gL~~LH~~~~~~ivH~Dlkp~NIll~~~ 678 (833)
..++|||||++|+|.+++...+. ......++|.+++.|+.||+.||+|||++ +||||||||+|||++++
T Consensus 89 -~~~lV~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~---~iiHRDlKp~NILl~~~ 164 (299)
T 4asz_A 89 -PLIMVFEYMKHGDLNKFLRAHGPDAVLMAEGNPPTELTQSQMLHIAQQIAAGMVYLASQ---HFVHRDLATRNCLVGEN 164 (299)
T ss_dssp -SEEEEEECCTTCBHHHHHHHTSHHHHHC----CCCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECGG
T ss_pred -EEEEEEEcCCCCcHHHHHHhcCcccccccccCCCCCCCHHHHHHHHHHHHHHHHHHHhC---CcccCccCHhhEEECCC
Confidence 78999999999999999986531 01123699999999999999999999999 99999999999999999
Q ss_pred CcEEEcccccccccCcccccccccCCCccccccccccccCccccCCCCCCcccccccCCcCCCccccCCccHHHHHH-Hh
Q 040925 679 MVAHVCDFGLAKFLSDHQLDTAVKTPSSSIGLKGTVGYVAPEYGMGSEASMTGDIFTGRRPIDAVFNEGHSLHEFAK-TA 757 (833)
Q Consensus 679 ~~~kL~DfG~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~s~~~~~~~~~~~g~~l~~~~~-~~ 757 (833)
+.+||+|||+|+......... ......||+.|||||++.+..|+.++|||| +|+++||+++ +.
T Consensus 165 ~~~Ki~DFGla~~~~~~~~~~------~~~~~~gt~~ymAPE~~~~~~~~~k~DVwS----------~Gvvl~Ellt~G~ 228 (299)
T 4asz_A 165 LLVKIGDFGMSRDVYSTDYYR------VGGHTMLPIRWMPPESIMYRKFTTESDVWS----------LGVVLWEIFTYGK 228 (299)
T ss_dssp GCEEECCCSCHHHHTGGGCEE------ETTTEEECGGGCCHHHHHHCCCCHHHHHHH----------HHHHHHHHHTTTC
T ss_pred CcEEECCcccceecCCCCcee------ecCceecChhhcCHHHHcCCCCCchhhHHH----------HHHHHHHHHcCCC
Confidence 999999999998665432211 112346999999999999999999999999 7888888887 67
Q ss_pred CCCcccccccccchhhhccccchhhhhhhhchHHHHHHHHHHhhccCCCCCCCCCCHHHHHHHHHHhhhh
Q 040925 758 LPEKVMEIVDPSLLMEVMTNNSMIQEDKRVKTEECLNAIIRTGVLCSMESPFERMDMRDVVAKLCHTRET 827 (833)
Q Consensus 758 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~i~~~ 827 (833)
.|+.... ..+.......... ...++.+++.+.+++.+||+.||++|||++||++.|+++.+.
T Consensus 229 ~Pf~~~~--~~~~~~~i~~~~~------~~~p~~~~~~~~~li~~cl~~dP~~RPs~~~i~~~L~~~~~~ 290 (299)
T 4asz_A 229 QPWYQLS--NNEVIECITQGRV------LQRPRTCPQEVYELMLGCWQREPHMRKNIKGIHTLLQNLAKA 290 (299)
T ss_dssp CTTTTSC--HHHHHHHHHHTCC------CCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred CCCCCCC--HHHHHHHHHcCCC------CCCCccchHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHHhc
Confidence 7765322 1111111111111 112345677899999999999999999999999999988764
No 13
>3omv_A RAF proto-oncogene serine/threonine-protein kinas; serine/threonine-protein kinase, transferase; HET: SM5; 4.00A {Homo sapiens}
Probab=100.00 E-value=2.9e-50 Score=419.21 Aligned_cols=265 Identities=26% Similarity=0.366 Sum_probs=206.4
Q ss_pred hcCCccCceeccCcceEEEEEEECCCceEEEEEEeeccCC--cchhHHHHHHHHHhhcCCCccceEeeEeecCCCCCCce
Q 040925 530 TGEFSSSNMIGQGSFGYVYKGTLGEDEMIVAVKVINLKYK--GASRSFVAECEALRNIRHRNLIKIITICSSTDFKGTDF 607 (833)
Q Consensus 530 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~--~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~ 607 (833)
.+++++.++||+|+||+||+|++.. .||||+++.... ...+.|.+|++++++++|||||+++|++... .
T Consensus 35 ~~~l~l~~~iG~G~fG~Vy~~~~~~---~vAvK~~~~~~~~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~~~------~ 105 (307)
T 3omv_A 35 ASEVMLSTRIGSGSFGTVYKGKWHG---DVAVKILKVVDPTPEQFQAFRNEVAVLRKTRHVNILLFMGYMTKD------N 105 (307)
T ss_dssp TTSCCEEEECCCCSSSEEEEEESSS---EEEEEECCCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSS------S
T ss_pred HHHeEEeeEEeeCCCcEEEEEEECC---cEEEEEEEecCCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEECC------e
Confidence 4578889999999999999998753 499999975432 2346799999999999999999999987432 4
Q ss_pred EeEEEEecCCCChhhhhccCCCccccccCCHHHHHHHHHHHHHHHHHHhhcCCCCceeeCCCCCCeeecCCCcEEEcccc
Q 040925 608 KAFVFEYMENGSLKDWLHQSDDQVEVCKLSLIQRVNIAIDVASAMEYLHHHCQPPMVHGDLKPSNVLLDHDMVAHVCDFG 687 (833)
Q Consensus 608 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~gL~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kL~DfG 687 (833)
.++|||||++|+|.+++..... .+++.++..|+.|||.||+|||++ +||||||||+|||+++++.+||+|||
T Consensus 106 ~~iVmEy~~gGsL~~~l~~~~~-----~l~~~~~~~i~~qia~gL~yLH~~---~IiHRDlKp~NILl~~~~~~Ki~DFG 177 (307)
T 3omv_A 106 LAIVTQWCEGSSLYKHLHVQET-----KFQMFQLIDIARQTAQGMDYLHAK---NIIHRDMKSNNIFLHEGLTVKIGDFG 177 (307)
T ss_dssp CEEEEECCSSCBHHHHHHTSCC-----CCCHHHHHHHHHHHHHHHHHHHHT---TCBCSCCCSSSEEEETTEEEEECCCS
T ss_pred EEEEEEcCCCCCHHHHHhhcCC-----CCCHHHHHHHHHHHHHHHHHHHHC---CccCCccCHHHEEECCCCcEEEeecc
Confidence 7899999999999999976542 699999999999999999999999 99999999999999999999999999
Q ss_pred cccccCcccccccccCCCccccccccccccCccccCC---CCCCcccccccCCcCCCccccCCccHHHHHHHhCCCcccc
Q 040925 688 LAKFLSDHQLDTAVKTPSSSIGLKGTVGYVAPEYGMG---SEASMTGDIFTGRRPIDAVFNEGHSLHEFAKTALPEKVME 764 (833)
Q Consensus 688 ~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~---~~~~~~~Di~s~~~~~~~~~~~g~~l~~~~~~~~p~~~~~ 764 (833)
+|+........ ......+||+.|||||++.+ ..|+.++|||| +|+++||++++..|+....
T Consensus 178 la~~~~~~~~~------~~~~~~~GT~~ymAPE~l~~~~~~~y~~ksDVwS----------~Gvvl~Elltg~~Pf~~~~ 241 (307)
T 3omv_A 178 LATVKSRWSGS------QQVEQPTGSVLWMAPEVIRMQDNNPFSFQSDVYS----------YGIVLYELMTGELPYSHIN 241 (307)
T ss_dssp SCBC------------------CCCCTTSCCHHHHHCCSSCCCCHHHHHHH----------HHHHHHHHHHSSCTTTTCC
T ss_pred CceecccCCcc------eeecccccCCCccCHHHhhccCCCCCCcHHHhHh----------HHHHHHHHHHCCCCCCCCC
Confidence 99866442211 12234579999999999864 45899999999 8999999999999975322
Q ss_pred cccccchhhhccccchhhhhhhhchHHHHHHHHHHhhccCCCCCCCCCCHHHHHHHHHHhhhhhhc
Q 040925 765 IVDPSLLMEVMTNNSMIQEDKRVKTEECLNAIIRTGVLCSMESPFERMDMRDVVAKLCHTRETFLG 830 (833)
Q Consensus 765 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~i~~~~~~ 830 (833)
. .......+..... .+.....+.++++.+.+++.+||+.||++|||+.||++.|+.++..+.+
T Consensus 242 ~--~~~~~~~~~~~~~-~p~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~ei~~~Le~l~~~lpk 304 (307)
T 3omv_A 242 N--RDQIIFMVGRGYA-SPDLSKLYKNCPKAMKRLVADCVKKVKEERPLFPQILSSIELLQHSLPK 304 (307)
T ss_dssp C--HHHHHHHHHTTCC-CCCSTTSCTTSCHHHHHHHHHHTCSSSTTSCCHHHHHHHHHHHHTTCCC
T ss_pred h--HHHHHHHHhcCCC-CCCcccccccchHHHHHHHHHHcCCCHhHCcCHHHHHHHHHHHhccCCC
Confidence 1 1111111111110 1111122345677899999999999999999999999999998877654
No 14
>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens}
Probab=100.00 E-value=2.5e-50 Score=426.10 Aligned_cols=265 Identities=23% Similarity=0.358 Sum_probs=205.9
Q ss_pred cCCccCceeccCcceEEEEEEEC-----CCceEEEEEEeeccCCcchhHHHHHHHHHhhcCCCccceEeeEeecCCCCCC
Q 040925 531 GEFSSSNMIGQGSFGYVYKGTLG-----EDEMIVAVKVINLKYKGASRSFVAECEALRNIRHRNLIKIITICSSTDFKGT 605 (833)
Q Consensus 531 ~~y~~~~~lg~G~~g~Vy~~~~~-----~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~ 605 (833)
.+|.+.++||+|+||+||+|+++ .+++.||||+++.......++|.+|+++|++++|||||+++|+|.+.+
T Consensus 41 ~d~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~~~---- 116 (329)
T 4aoj_A 41 RDIVLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTMLQHQHIVRFFGVCTEGR---- 116 (329)
T ss_dssp GGEEEEEEEEECSSEEEEEEEESSSCC---CEEEEEEEESCCSHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSS----
T ss_pred HHeEEEEEEccCCCcEEEEEEECCcccCCCCeEEEEEEECcCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECC----
Confidence 46788899999999999999875 358899999998665556678999999999999999999999986654
Q ss_pred ceEeEEEEecCCCChhhhhccCCCc---------cccccCCHHHHHHHHHHHHHHHHHHhhcCCCCceeeCCCCCCeeec
Q 040925 606 DFKAFVFEYMENGSLKDWLHQSDDQ---------VEVCKLSLIQRVNIAIDVASAMEYLHHHCQPPMVHGDLKPSNVLLD 676 (833)
Q Consensus 606 ~~~~lv~e~~~~gsL~~~l~~~~~~---------~~~~~l~~~~~~~i~~qi~~gL~~LH~~~~~~ivH~Dlkp~NIll~ 676 (833)
..|+|||||++|+|.++++..... ....+++|.+++.|+.||+.||+|||+. +||||||||+|||++
T Consensus 117 -~~~lV~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~---~iiHRDLKp~NILl~ 192 (329)
T 4aoj_A 117 -PLLMVFEYMRHGDLNRFLRSHGPDAKLLAGGEDVAPGPLGLGQLLAVASQVAAGMVYLAGL---HFVHRDLATRNCLVG 192 (329)
T ss_dssp -SEEEEEECCTTCBHHHHHHTSSCC-----------CCSCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEEE
T ss_pred -EEEEEEEcCCCCcHHHHHHhcCcccccccccccccCCCCCHHHHHHHHHHHHHHHHHHhcC---CeecccccHhhEEEC
Confidence 789999999999999999865421 1123689999999999999999999999 999999999999999
Q ss_pred CCCcEEEcccccccccCcccccccccCCCccccccccccccCccccCCCCCCcccccccCCcCCCccccCCccHHHHHH-
Q 040925 677 HDMVAHVCDFGLAKFLSDHQLDTAVKTPSSSIGLKGTVGYVAPEYGMGSEASMTGDIFTGRRPIDAVFNEGHSLHEFAK- 755 (833)
Q Consensus 677 ~~~~~kL~DfG~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~s~~~~~~~~~~~g~~l~~~~~- 755 (833)
+++.+||+|||+|+......... ......||+.|||||++.+..|+.++|||| +|+++||+++
T Consensus 193 ~~~~~Ki~DFGla~~~~~~~~~~------~~~~~~gt~~ymAPE~~~~~~~~~~sDvwS----------~Gvvl~Ellt~ 256 (329)
T 4aoj_A 193 QGLVVKIGDFGMSRDIYSTDYYR------VGGRTMLPIRWMPPESILYRKFTTESDVWS----------FGVVLWEIFTY 256 (329)
T ss_dssp TTTEEEECCCC----------------------CCCCGGGCCHHHHTTCCCCHHHHHHH----------HHHHHHHHHTT
T ss_pred CCCcEEEcccccceeccCCCcce------ecCcccccccccChhhhcCCCCCccccccc----------hHHHHHHHHcC
Confidence 99999999999998764432111 122356999999999999999999999999 7888888887
Q ss_pred HhCCCcccccccccchhhhccccchhhhhhhhchHHHHHHHHHHhhccCCCCCCCCCCHHHHHHHHHHhhhh
Q 040925 756 TALPEKVMEIVDPSLLMEVMTNNSMIQEDKRVKTEECLNAIIRTGVLCSMESPFERMDMRDVVAKLCHTRET 827 (833)
Q Consensus 756 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~i~~~ 827 (833)
+..|+..... ........... ....++.+++.+.+++.+||+.||++|||++||+++|+.+.+.
T Consensus 257 G~~Pf~~~~~--~~~~~~i~~g~------~~~~p~~~~~~~~~li~~cl~~dP~~RPs~~ei~~~L~~l~~~ 320 (329)
T 4aoj_A 257 GKQPWYQLSN--TEAIDCITQGR------ELERPRACPPEVYAIMRGCWQREPQQRHSIKDVHARLQALAQA 320 (329)
T ss_dssp SCCTTCSSCH--HHHHHHHHHTC------CCCCCTTCCHHHHHHHHHHCCSSTTTSCCHHHHHHHHHHHHHS
T ss_pred CCCCCCCCCH--HHHHHHHHcCC------CCCCcccccHHHHHHHHHHcCcChhHCcCHHHHHHHHHHHhhC
Confidence 6777652221 11111111111 1112344677899999999999999999999999999998764
No 15
>4fih_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP; 1.97A {Homo sapiens} PDB: 4fig_A* 4fif_A* 4fii_A* 4fij_A*
Probab=100.00 E-value=2.8e-50 Score=424.18 Aligned_cols=251 Identities=21% Similarity=0.289 Sum_probs=209.5
Q ss_pred cCCccCceeccCcceEEEEEEECCCceEEEEEEeeccCCcchhHHHHHHHHHhhcCCCccceEeeEeecCCCCCCceEeE
Q 040925 531 GEFSSSNMIGQGSFGYVYKGTLGEDEMIVAVKVINLKYKGASRSFVAECEALRNIRHRNLIKIITICSSTDFKGTDFKAF 610 (833)
Q Consensus 531 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~~l 610 (833)
..|++.++||+|+||+||+|+++.+|+.||||+++.......+.+.+|+++|++++|||||++++++.+.+ ..|+
T Consensus 74 ~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~-----~~~i 148 (346)
T 4fih_A 74 SYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGD-----ELWV 148 (346)
T ss_dssp GTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEGGGCSSGGGGHHHHHHHHHCCCTTBCCEEEEEEETT-----EEEE
T ss_pred HhcEEeEEeecCcCeEEEEEEECCCCCEEEEEEEecCchhHHHHHHHHHHHHHhCCCCCCCcEEEEEEECC-----EEEE
Confidence 46999999999999999999999999999999998666666678999999999999999999999977655 8999
Q ss_pred EEEecCCCChhhhhccCCCccccccCCHHHHHHHHHHHHHHHHHHhhcCCCCceeeCCCCCCeeecCCCcEEEccccccc
Q 040925 611 VFEYMENGSLKDWLHQSDDQVEVCKLSLIQRVNIAIDVASAMEYLHHHCQPPMVHGDLKPSNVLLDHDMVAHVCDFGLAK 690 (833)
Q Consensus 611 v~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~gL~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kL~DfG~a~ 690 (833)
|||||+||+|.+++... .+++.+++.|+.||+.||+|||++ +||||||||+|||++.+|.+||+|||+|+
T Consensus 149 vmEy~~gg~L~~~l~~~-------~l~e~~~~~~~~qi~~aL~ylH~~---~IiHRDlKp~NILl~~~g~vKl~DFGla~ 218 (346)
T 4fih_A 149 VMEFLEGGALTDIVTHT-------RMNEEQIAAVCLAVLQALSVLHAQ---GVIHRDIKSDSILLTHDGRVKLSDFGFCA 218 (346)
T ss_dssp EECCCTTEEHHHHHHHS-------CCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTCCEEECCCTTCE
T ss_pred EEeCCCCCcHHHHHHcC-------CCCHHHHHHHHHHHHHHHHHHHHC---CcccccCCHHHEEECCCCCEEEecCcCce
Confidence 99999999999999753 589999999999999999999999 99999999999999999999999999998
Q ss_pred ccCcccccccccCCCccccccccccccCccccCCCCCCcccccccCCcCCCccccCCccHHHHHHHhCCCcccccccccc
Q 040925 691 FLSDHQLDTAVKTPSSSIGLKGTVGYVAPEYGMGSEASMTGDIFTGRRPIDAVFNEGHSLHEFAKTALPEKVMEIVDPSL 770 (833)
Q Consensus 691 ~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~s~~~~~~~~~~~g~~l~~~~~~~~p~~~~~~~~~~~ 770 (833)
.+.... ......+||+.|||||++.+..|+.++|||| .|+++|++++|..|+......+ .
T Consensus 219 ~~~~~~--------~~~~~~~GTp~YmAPEvl~~~~y~~~~DiWS----------lGvilyeml~G~~PF~~~~~~~--~ 278 (346)
T 4fih_A 219 QVSKEV--------PRRKSLVGTPYWMAPELISRLPYGPEVDIWS----------LGIMVIEMVDGEPPYFNEPPLK--A 278 (346)
T ss_dssp ECCSSS--------CCBCCCCSCGGGCCHHHHTTCCBCTHHHHHH----------HHHHHHHHHHSSCTTTTSCHHH--H
T ss_pred ecCCCC--------CcccccccCcCcCCHHHHCCCCCCcHHHHHH----------HHHHHHHHHHCCCCCCCcCHHH--H
Confidence 765422 1223468999999999999999999999999 8999999999999985322111 1
Q ss_pred hhhhccccchhhhhhhhchHHHHHHHHHHhhccCCCCCCCCCCHHHHHHH
Q 040925 771 LMEVMTNNSMIQEDKRVKTEECLNAIIRTGVLCSMESPFERMDMRDVVAK 820 (833)
Q Consensus 771 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~ 820 (833)
. ..+.... +........+++.+.+++.+||..||++|||++|+++.
T Consensus 279 ~-~~i~~~~---~~~~~~~~~~s~~~~dli~~~L~~dP~~R~ta~e~l~H 324 (346)
T 4fih_A 279 M-KMIRDNL---PPRLKNLHKVSPSLKGFLDRLLVRDPAQRATAAELLKH 324 (346)
T ss_dssp H-HHHHHSS---CCCCSCGGGSCHHHHHHHHHHSCSSTTTSCCHHHHTTC
T ss_pred H-HHHHcCC---CCCCCccccCCHHHHHHHHHHcCCChhHCcCHHHHhcC
Confidence 1 1111100 00111223456678999999999999999999999864
No 16
>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A*
Probab=100.00 E-value=3.9e-50 Score=421.97 Aligned_cols=261 Identities=22% Similarity=0.263 Sum_probs=210.1
Q ss_pred hcCCccCceeccCcceEEEEEEECCCceEEEEEEeeccCCcchhHHHHHHHHHhhcCCCccceEeeEeecCCCCCCceEe
Q 040925 530 TGEFSSSNMIGQGSFGYVYKGTLGEDEMIVAVKVINLKYKGASRSFVAECEALRNIRHRNLIKIITICSSTDFKGTDFKA 609 (833)
Q Consensus 530 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~~ 609 (833)
.+.|++.++||+|+||+||+|+++.+|+.||||+++... ...+|+.++++++|||||++++++.+.+ ..|
T Consensus 57 ~~~~~~~~~lG~G~fG~Vy~a~~~~~g~~vAiK~i~~~~-----~~~~E~~il~~l~HpnIV~l~~~~~~~~-----~~~ 126 (336)
T 4g3f_A 57 VHWMTHQPRVGRGSFGEVHRMKDKQTGFQCAVKKVRLEV-----FRVEELVACAGLSSPRIVPLYGAVREGP-----WVN 126 (336)
T ss_dssp TTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTT-----CCTHHHHTTTTCCCTTBCCEEEEEEETT-----EEE
T ss_pred hhheEeCcEeccCCCeEEEEEEECCCCCEEEEEEECHHH-----hHHHHHHHHHhCCCCCCCcEEEEEEECC-----EEE
Confidence 456888899999999999999999999999999997432 2247999999999999999999976655 899
Q ss_pred EEEEecCCCChhhhhccCCCccccccCCHHHHHHHHHHHHHHHHHHhhcCCCCceeeCCCCCCeeecCCC-cEEEccccc
Q 040925 610 FVFEYMENGSLKDWLHQSDDQVEVCKLSLIQRVNIAIDVASAMEYLHHHCQPPMVHGDLKPSNVLLDHDM-VAHVCDFGL 688 (833)
Q Consensus 610 lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~gL~~LH~~~~~~ivH~Dlkp~NIll~~~~-~~kL~DfG~ 688 (833)
+|||||+||+|.++++..+ .+++.+++.|+.||+.||+|||++ +||||||||+|||++.+| .+||+|||+
T Consensus 127 ivmEy~~gg~L~~~l~~~~------~l~e~~~~~~~~qi~~aL~ylH~~---~IiHRDlKp~NILl~~~g~~vKl~DFGl 197 (336)
T 4g3f_A 127 IFMELLEGGSLGQLIKQMG------CLPEDRALYYLGQALEGLEYLHTR---RILHGDVKADNVLLSSDGSRAALCDFGH 197 (336)
T ss_dssp EEECCCTTCBHHHHHHHHS------SCCHHHHHHHHHHHHHHHHHHHTT---TEECSCCCGGGEEECTTSCCEEECCCTT
T ss_pred EEEeccCCCcHHHHHHHcC------CCCHHHHHHHHHHHHHHHHHHHHC---CceecccCHHHEEEeCCCCEEEEeeCCC
Confidence 9999999999999998654 799999999999999999999999 999999999999999998 699999999
Q ss_pred ccccCcccccccccCCCccccccccccccCccccCCCCCCcccccccCCcCCCccccCCccHHHHHHHhCCCcccccccc
Q 040925 689 AKFLSDHQLDTAVKTPSSSIGLKGTVGYVAPEYGMGSEASMTGDIFTGRRPIDAVFNEGHSLHEFAKTALPEKVMEIVDP 768 (833)
Q Consensus 689 a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~s~~~~~~~~~~~g~~l~~~~~~~~p~~~~~~~~~ 768 (833)
|+.+........ ......++||+.|||||++.+..|+.++|||| .|+++|++++|..|+..... .
T Consensus 198 a~~~~~~~~~~~---~~~~~~~~GT~~YmAPE~~~~~~y~~~~DiwS----------lGvilyemltG~~Pf~~~~~--~ 262 (336)
T 4g3f_A 198 ALCLQPDGLGKS---LLTGDYIPGTETHMAPEVVMGKPCDAKVDIWS----------SCCMMLHMLNGCHPWTQYFR--G 262 (336)
T ss_dssp CEEC---------------CCCCCCGGGCCHHHHTTCCCCTHHHHHH----------HHHHHHHHHHSSCSSTTTCC--S
T ss_pred CeEccCCCcccc---eecCCccccCccccCHHHHCCCCCCcHHHHHH----------HHHHHHHHHHCcCCCCCCCH--H
Confidence 987755332111 11123467999999999999999999999999 89999999999999863221 1
Q ss_pred cchhhhccccchhhhhhhhchHHHHHHHHHHhhccCCCCCCCCCCHHHHHHHHHHhhhhh
Q 040925 769 SLLMEVMTNNSMIQEDKRVKTEECLNAIIRTGVLCSMESPFERMDMRDVVAKLCHTRETF 828 (833)
Q Consensus 769 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~i~~~~ 828 (833)
........... .....++++++.+.+++.+||++||++|||+.|+++.+....+..
T Consensus 263 ~~~~~i~~~~~----~~~~~~~~~s~~~~~li~~~L~~dP~~R~sa~el~~~l~~~l~~~ 318 (336)
T 4g3f_A 263 PLCLKIASEPP----PIREIPPSCAPLTAQAIQEGLRKEPVHRASAMELRRKVGKALQEV 318 (336)
T ss_dssp CCHHHHHHSCC----GGGGSCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCC----CchhcCccCCHHHHHHHHHHccCCHhHCcCHHHHHHHHHHHHhhh
Confidence 12122111111 111223456778899999999999999999999999998876654
No 17
>4b9d_A Serine/threonine-protein kinase NEK1; transferase, inhibitor; HET: CK7; 1.90A {Homo sapiens} PDB: 4apc_A*
Probab=100.00 E-value=2.1e-50 Score=425.81 Aligned_cols=252 Identities=19% Similarity=0.265 Sum_probs=203.2
Q ss_pred cCCccCceeccCcceEEEEEEECCCceEEEEEEeeccCC--cchhHHHHHHHHHhhcCCCccceEeeEeecCCCCCCceE
Q 040925 531 GEFSSSNMIGQGSFGYVYKGTLGEDEMIVAVKVINLKYK--GASRSFVAECEALRNIRHRNLIKIITICSSTDFKGTDFK 608 (833)
Q Consensus 531 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~--~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~ 608 (833)
++|++.+.||+|+||+||+|++..+|+.||||+++.... ...+.+.+|++++++++|||||++++++.+.+ ..
T Consensus 24 e~Y~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~-----~~ 98 (350)
T 4b9d_A 24 EKYVRLQKIGEGSFGKAILVKSTEDGRQYVIKEINISRMSSKEREESRREVAVLANMKHPNIVQYRESFEENG-----SL 98 (350)
T ss_dssp CCEEEEEEC------CEEEEEETTTCCEEEEEEEECTTSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETT-----EE
T ss_pred cceEEeEEEecCCCeEEEEEEECCCCCEEEEEEEehHHCCHHHHHHHHHHHHHHHHCCCCCCCcEEEEEEECC-----EE
Confidence 689999999999999999999999999999999975432 23467999999999999999999999976655 89
Q ss_pred eEEEEecCCCChhhhhccCCCccccccCCHHHHHHHHHHHHHHHHHHhhcCCCCceeeCCCCCCeeecCCCcEEEccccc
Q 040925 609 AFVFEYMENGSLKDWLHQSDDQVEVCKLSLIQRVNIAIDVASAMEYLHHHCQPPMVHGDLKPSNVLLDHDMVAHVCDFGL 688 (833)
Q Consensus 609 ~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~gL~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kL~DfG~ 688 (833)
|+|||||+||+|.+++...+.. .+++.+++.|+.||+.||+|||++ +||||||||+|||++.+|.+||+|||+
T Consensus 99 yiVmEy~~gg~L~~~i~~~~~~----~~~e~~~~~~~~qi~~aL~ylH~~---~IiHRDlKp~NILl~~~g~vKl~DFGl 171 (350)
T 4b9d_A 99 YIVMDYCEGGDLFKRINAQKGV----LFQEDQILDWFVQICLALKHVHDR---KILHRDIKSQNIFLTKDGTVQLGDFGI 171 (350)
T ss_dssp EEEEECCTTCBHHHHHHHTTTC----CCCHHHHHHHHHHHHHHHHHHHHT---TCEETTCCGGGEEECTTCCEEECSTTE
T ss_pred EEEEeCCCCCcHHHHHHHcCCC----CCCHHHHHHHHHHHHHHHHHHHHC---CeeeccCCHHHEEECCCCCEEEccccc
Confidence 9999999999999999765432 578999999999999999999999 999999999999999999999999999
Q ss_pred ccccCcccccccccCCCccccccccccccCccccCCCCCCcccccccCCcCCCccccCCccHHHHHHHhCCCcccccccc
Q 040925 689 AKFLSDHQLDTAVKTPSSSIGLKGTVGYVAPEYGMGSEASMTGDIFTGRRPIDAVFNEGHSLHEFAKTALPEKVMEIVDP 768 (833)
Q Consensus 689 a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~s~~~~~~~~~~~g~~l~~~~~~~~p~~~~~~~~~ 768 (833)
|+....... .....+||+.|||||++.+..|+.++|||| .|+++|+++++..|+......
T Consensus 172 a~~~~~~~~--------~~~~~~GT~~YmAPE~l~~~~y~~~~DiwS----------lGvilyemltG~~PF~~~~~~-- 231 (350)
T 4b9d_A 172 ARVLNSTVE--------LARACIGTPYYLSPEICENKPYNNKSDIWA----------LGCVLYELCTLKHAFEAGSMK-- 231 (350)
T ss_dssp ESCCCHHHH--------HHHHHHSCCTTCCHHHHTTCCCCHHHHHHH----------HHHHHHHHHHSSCSCCCSSHH--
T ss_pred ceeecCCcc--------cccccCCCccccCHHHHCCCCCCcHHHHHH----------HHHHHHHHHHCCCCCCCcCHH--
Confidence 987654321 112357999999999999999999999999 899999999999998632211
Q ss_pred cchhhhccccchhhhhhhhchHHHHHHHHHHhhccCCCCCCCCCCHHHHHHH
Q 040925 769 SLLMEVMTNNSMIQEDKRVKTEECLNAIIRTGVLCSMESPFERMDMRDVVAK 820 (833)
Q Consensus 769 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~ 820 (833)
........... ...+..+++.+.+++.+||+.||++|||++|+++.
T Consensus 232 ~~~~~i~~~~~------~~~~~~~s~~~~~li~~~L~~dP~~R~s~~e~l~h 277 (350)
T 4b9d_A 232 NLVLKIISGSF------PPVSLHYSYDLRSLVSQLFKRNPRDRPSVNSILEK 277 (350)
T ss_dssp HHHHHHHHTCC------CCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHTS
T ss_pred HHHHHHHcCCC------CCCCccCCHHHHHHHHHHccCChhHCcCHHHHhcC
Confidence 11111111111 01123356678999999999999999999999864
No 18
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=2e-48 Score=451.73 Aligned_cols=444 Identities=21% Similarity=0.253 Sum_probs=383.0
Q ss_pred CcEEEcCCCcCcccCCccccCCCCCCEEEccCCcccccCCccCCCCCCCCEEEcCCCcccccCCccccCCCCCcEEECCC
Q 040925 1 LQTLAVNDNYLTGQLPDFVGNLSDLEVIRIMGNSLGGKIPTTLGLLRNLVSLNVAENKFSGMFPRSICNISSLELIQLAL 80 (833)
Q Consensus 1 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~ 80 (833)
|++|+|++|++++..|.+|.++++|++|+|++|++++..|.+|+.+++|++|+|++|+++++.+..|+++++|++|+|++
T Consensus 54 L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~ 133 (570)
T 2z63_A 54 LQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAH 133 (570)
T ss_dssp CCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCS
T ss_pred ceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccccccCCCccccccccccEEecCC
Confidence 68999999999988889999999999999999999988899999999999999999999977777899999999999999
Q ss_pred ccccc-ccCchhhcCCCCccEEEccCCcceeeCCccccCCCCC----cEEEcccCccccccCcCccCCCcCceEeccccc
Q 040925 81 NRFSG-NLPFDIVVNLPNLKALAIGGNNFFGSIPYSLSNASNL----ELLDLSVNQFKGNVSIDFSSLKNLLWLNLEQNN 155 (833)
Q Consensus 81 N~l~~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L----~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~ 155 (833)
|.+++ .+| ..|.++++|++|++++|.+++..+..|+.+++| ++|++++|.++++.+..|..+ +|+.|++++|.
T Consensus 134 n~l~~~~lp-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~ 211 (570)
T 2z63_A 134 NLIQSFKLP-EYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNF 211 (570)
T ss_dssp SCCCCCCCC-GGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCC
T ss_pred CccceecCh-hhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCceecCHHHhccC-cceeEeccccc
Confidence 99983 244 567899999999999999998888999999999 899999999999999988876 79999998873
Q ss_pred CCC-------------------------------CCCCCc---------------------ccccccCCCCCCCEEEccC
Q 040925 156 LGT-------------------------------GTATDL---------------------DFVTFLTNCSSLKALSLAD 183 (833)
Q Consensus 156 l~~-------------------------------~~~~~~---------------------~~~~~l~~l~~L~~L~Ls~ 183 (833)
... ++...+ ..+..+..+++|++|++++
T Consensus 212 ~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~ 291 (570)
T 2z63_A 212 DSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVS 291 (570)
T ss_dssp SCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEES
T ss_pred ccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecC
Confidence 211 100000 1224466789999999999
Q ss_pred CcCcccCChhHhhhcccccEEEccCccccccCChhhhcCCCCCeEeccCCcccccCCccccCCCCCCEEEcccccCcccC
Q 040925 184 NQFGGELPHSIANLSSTVINFGIGRNQISGTIPPGIRNLVNLIGFGAEENQLHGTIPDAIGELKNLQKLCLFRNFLQGRI 263 (833)
Q Consensus 184 N~l~~~~p~~~~~l~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 263 (833)
|+++ .+|..+..+ .++.|++++|.+. .+|. ..+++|+.|++++|.+.+..+. ..+++|++|++++|.+++..
T Consensus 292 ~~l~-~l~~~~~~~--~L~~L~l~~n~~~-~l~~--~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~ 363 (570)
T 2z63_A 292 VTIE-RVKDFSYNF--GWQHLELVNCKFG-QFPT--LKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKG 363 (570)
T ss_dssp CEEC-SCCBCCSCC--CCSEEEEESCBCS-SCCB--CBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEE
T ss_pred ccch-hhhhhhccC--CccEEeeccCccc-ccCc--ccccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCccc
Confidence 9998 788888877 7999999999998 4444 5789999999999999876655 78899999999999998654
Q ss_pred --CccccCCCCCCeEEeecccccCCCCCCCCCCCccceeecCCceecccCC-cccccccccceeeecCCCccCCCCCccc
Q 040925 264 --PSGLGNLTKLANLELSSNSLQGNIPSSLGNCQNLMSFTASQNKLTGALP-HQLLSITTLSLYLDLSNNLLNGSLPLQV 340 (833)
Q Consensus 264 --~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p-~~~~~~~~ll~~L~ls~N~l~~~~~~~~ 340 (833)
+..+.++++|++|++++|.+.+..+. +..+++|+.|++++|.+++..| ..+..+..+ ++|++++|.+.+..|..|
T Consensus 364 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L-~~L~l~~n~l~~~~~~~~ 441 (570)
T 2z63_A 364 CCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNL-IYLDISHTHTRVAFNGIF 441 (570)
T ss_dssp EEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTC-CEEECTTSCCEECCTTTT
T ss_pred cccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCCCC-CEEeCcCCcccccchhhh
Confidence 67889999999999999999965555 9999999999999999996666 355666666 899999999998899999
Q ss_pred ccCCCcCEEeccCCcCC-CCCCccccCCCCCcEEeecCCccccccCccccCCCCCCeEEccCcccCCCchhhhcCCCCCc
Q 040925 341 GHLKNLVILDISSNQFS-GVIPGTLSTCVCLEYLDISSNSFHGVIPLSLSFLKSIKELNVSSNNLSGQIPEFLKNLSVLE 419 (833)
Q Consensus 341 ~~l~~L~~L~ls~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~l~~l~~L~ 419 (833)
.++++|++|++++|.++ +..|..|..+++|++|+|++|++++..|..|..+++|+.|++++|++++..|..+..+++|+
T Consensus 442 ~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 521 (570)
T 2z63_A 442 NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQ 521 (570)
T ss_dssp TTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCC
T ss_pred hcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCc
Confidence 99999999999999997 57889999999999999999999999899999999999999999999999899999999999
Q ss_pred eEECccCcCccccCCCCc---cCCCccccccCCcCCCCCcc
Q 040925 420 FLSLSYNHFEGEVPTKGV---FSNKTKISLQGNMKLCGGID 457 (833)
Q Consensus 420 ~L~l~~N~l~~~~~~~~~---~~~~~~l~l~~N~~~c~~~~ 457 (833)
.|++++|+++|.+|.... |-......+.+.+ .|.++.
T Consensus 522 ~L~l~~N~~~~~~~~~~~~~~wl~~~~~~~~~~~-~C~~~~ 561 (570)
T 2z63_A 522 KIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQGSA-KCSGSG 561 (570)
T ss_dssp EEECCSSCBCCCTTTTHHHHHHHHHTGGGEESCC-BBTTTC
T ss_pred EEEecCCcccCCCcchHHHHHHHHhccccCCCch-hhCCCC
Confidence 999999999999987532 2222222344444 676553
No 19
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=4.9e-49 Score=459.40 Aligned_cols=415 Identities=20% Similarity=0.269 Sum_probs=312.3
Q ss_pred cEEEcCCCcCcccCCccccCCCCCCEEEccCCcccccCCccCC-------------------------------------
Q 040925 2 QTLAVNDNYLTGQLPDFVGNLSDLEVIRIMGNSLGGKIPTTLG------------------------------------- 44 (833)
Q Consensus 2 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~------------------------------------- 44 (833)
+.|+|++|+++|.+|.+|++|++|++|+|++|.+. ..+..++
T Consensus 84 ~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~-~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~ 162 (636)
T 4eco_A 84 TGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEK-VNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLI 162 (636)
T ss_dssp EEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGG-GTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHH
T ss_pred EEEEecCcccCCcCChHHhcCccceEEECcCCccc-cCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHH
Confidence 57889999999889999999999999999888661 1111111
Q ss_pred ----------------CCCCCCEEEcC--CCcccccCCccccCCCCCcEEECCCcccccc-----------------cCc
Q 040925 45 ----------------LLRNLVSLNVA--ENKFSGMFPRSICNISSLELIQLALNRFSGN-----------------LPF 89 (833)
Q Consensus 45 ----------------~l~~L~~L~L~--~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~-----------------~~~ 89 (833)
....++.+.+. +|++++ +|.+|+++++|++|+|++|++++. +|.
T Consensus 163 ~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~ 241 (636)
T 4eco_A 163 KDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTE 241 (636)
T ss_dssp HHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTS
T ss_pred HHHhhcCccccccccccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCch
Confidence 11122222222 577887 788888888888888888888853 775
Q ss_pred hhh-cCCCCccEEEccCCcceeeCCccccCCCCCcEEEcccCc-ccc-ccCcCccCC------CcCceEecccccCCCCC
Q 040925 90 DIV-VNLPNLKALAIGGNNFFGSIPYSLSNASNLELLDLSVNQ-FKG-NVSIDFSSL------KNLLWLNLEQNNLGTGT 160 (833)
Q Consensus 90 ~~~-~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~-i~~-~~~~~~~~l------~~L~~L~L~~N~l~~~~ 160 (833)
.+. .++++|++|+|++|.+.+.+|..|+++++|++|+|++|+ +++ ..|..+..+ ++|++|+|++|+++.++
T Consensus 242 ~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip 321 (636)
T 4eco_A 242 DLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFP 321 (636)
T ss_dssp CCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCC
T ss_pred hhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccC
Confidence 542 278888888888888888888888888888888888887 876 556666665 88888888888887543
Q ss_pred CCCcccccccCCCCCCCEEEccCCcCcccCChhHhhhcccccEEEccCccccccCChhhhcCCC-CCeEeccCCcccccC
Q 040925 161 ATDLDFVTFLTNCSSLKALSLADNQFGGELPHSIANLSSTVINFGIGRNQISGTIPPGIRNLVN-LIGFGAEENQLHGTI 239 (833)
Q Consensus 161 ~~~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~l~~L~l~~n~i~~~~~~~~~~l~~-L~~L~L~~N~l~~~~ 239 (833)
. ...+.++++|++|+|++|++++.+| .+..+. .++.|++++|+++ .+|..+.++++ |+.|++++|+++ .+
T Consensus 322 ~-----~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~-~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~l 392 (636)
T 4eco_A 322 V-----ETSLQKMKKLGMLECLYNQLEGKLP-AFGSEI-KLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YI 392 (636)
T ss_dssp C-----HHHHTTCTTCCEEECCSCCCEEECC-CCEEEE-EESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SC
T ss_pred c-----hhhhccCCCCCEEeCcCCcCccchh-hhCCCC-CCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-cc
Confidence 2 0147788888888888888888888 666654 4778888888888 67777888888 888888888888 66
Q ss_pred CccccCCC--CCCEEEcccccCcccCCcccc-------CCCCCCeEEeecccccCCCCCCCCCCCccceeecCCceeccc
Q 040925 240 PDAIGELK--NLQKLCLFRNFLQGRIPSGLG-------NLTKLANLELSSNSLQGNIPSSLGNCQNLMSFTASQNKLTGA 310 (833)
Q Consensus 240 ~~~~~~l~--~L~~L~L~~N~l~~~~~~~~~-------~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~ 310 (833)
|..+..+. +|++|+|++|.+++..|..|. .+++|++|+|++|+++...+..+..+++|+.|++++|+++ .
T Consensus 393 p~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~ 471 (636)
T 4eco_A 393 PNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-E 471 (636)
T ss_dssp CSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-B
T ss_pred chhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-C
Confidence 77776654 788888888888888887777 7778888888888888554455666888888888888888 7
Q ss_pred CCcccccccc-------cceeeecCCCccCCCCCcccc--cCCCcCEEeccCCcCCCCCCccccCCCCCcEEee------
Q 040925 311 LPHQLLSITT-------LSLYLDLSNNLLNGSLPLQVG--HLKNLVILDISSNQFSGVIPGTLSTCVCLEYLDI------ 375 (833)
Q Consensus 311 ~p~~~~~~~~-------ll~~L~ls~N~l~~~~~~~~~--~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~L------ 375 (833)
+|...+.... .++.|+|++|.++ .+|..+. .+++|+.|+|++|++++ +|..+..+++|+.|+|
T Consensus 472 i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~l 549 (636)
T 4eco_A 472 IPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDA 549 (636)
T ss_dssp CCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCT
T ss_pred cCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCccc
Confidence 7766655441 3377888888888 6676665 78888888888888886 6777888888888888
Q ss_pred cCCccccccCccccCCCCCCeEEccCcccCCCchhhhcCCCCCceEECccCcCccccC
Q 040925 376 SSNSFHGVIPLSLSFLKSIKELNVSSNNLSGQIPEFLKNLSVLEFLSLSYNHFEGEVP 433 (833)
Q Consensus 376 s~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~ 433 (833)
++|++.+..|..+..+++|+.|+|++|+++ .+|..+. ++|+.||+++|++.+...
T Consensus 550 s~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~~~ 604 (636)
T 4eco_A 550 QGNRTLREWPEGITLCPSLTQLQIGSNDIR-KVNEKIT--PNISVLDIKDNPNISIDL 604 (636)
T ss_dssp TCCBCCCCCCTTGGGCSSCCEEECCSSCCC-BCCSCCC--TTCCEEECCSCTTCEEEC
T ss_pred ccCcccccChHHHhcCCCCCEEECCCCcCC-ccCHhHh--CcCCEEECcCCCCccccH
Confidence 456677777888888888888888888884 5666554 678888888888776543
No 20
>4gt4_A Tyrosine-protein kinase transmembrane receptor RO; ATP binding, phosphorylation, transferase; 2.41A {Homo sapiens} PDB: 3zzw_A
Probab=100.00 E-value=1e-49 Score=417.38 Aligned_cols=262 Identities=22% Similarity=0.304 Sum_probs=207.0
Q ss_pred cCCccCceeccCcceEEEEEEEC-----CCceEEEEEEeeccCC-cchhHHHHHHHHHhhcCCCccceEeeEeecCCCCC
Q 040925 531 GEFSSSNMIGQGSFGYVYKGTLG-----EDEMIVAVKVINLKYK-GASRSFVAECEALRNIRHRNLIKIITICSSTDFKG 604 (833)
Q Consensus 531 ~~y~~~~~lg~G~~g~Vy~~~~~-----~~~~~vavK~~~~~~~-~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~ 604 (833)
.++++.+.||+|+||+||+|++. .+++.||||+++.... ...++|.+|+.++++++|||||+++|+|...+
T Consensus 26 ~~~~~~~~lG~G~fG~Vykg~~~~~~~~~~~~~VAvK~l~~~~~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~~~~--- 102 (308)
T 4gt4_A 26 SAVRFMEELGEDRFGKVYKGHLFGPAPGEQTQAVAIKTLKDKAEGPLREEFRHEAMLRARLQHPNVVCLLGVVTKDQ--- 102 (308)
T ss_dssp GGEEEEEEEEECSSCEEEEEEEC-------CEEEEEEECCC-CCC-CHHHHHHHHHHHHHCCCTTBCCEEEEECSSS---
T ss_pred HHCeEeeEeccCCCcEEEEEEEcCCccCCCCeEEEEEEECcccChHHHHHHHHHHHHHHhCCCCCCCCcceEEEECC---
Confidence 35677899999999999999974 3578999999975433 34578999999999999999999999986654
Q ss_pred CceEeEEEEecCCCChhhhhccCCCc----------cccccCCHHHHHHHHHHHHHHHHHHhhcCCCCceeeCCCCCCee
Q 040925 605 TDFKAFVFEYMENGSLKDWLHQSDDQ----------VEVCKLSLIQRVNIAIDVASAMEYLHHHCQPPMVHGDLKPSNVL 674 (833)
Q Consensus 605 ~~~~~lv~e~~~~gsL~~~l~~~~~~----------~~~~~l~~~~~~~i~~qi~~gL~~LH~~~~~~ivH~Dlkp~NIl 674 (833)
..++|||||++|+|.+++...... .....+++.++.+|+.|||.||+|||++ +||||||||+|||
T Consensus 103 --~~~lV~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~---~iiHRDLK~~NIL 177 (308)
T 4gt4_A 103 --PLSMIFSYCSHGDLHEFLVMRSPHSDVGSTDDDRTVKSALEPPDFVHLVAQIAAGMEYLSSH---HVVHKDLATRNVL 177 (308)
T ss_dssp --SCEEEEECCSSCBHHHHHHTTCSSCCCC-----CCEECCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEE
T ss_pred --EEEEEEEcCCCCcHHHHHHhhCccccccccccccccccCCCHHHHHHHHHHHHHHHHHHHhC---CCCCCCccccceE
Confidence 789999999999999999754321 1123689999999999999999999999 9999999999999
Q ss_pred ecCCCcEEEcccccccccCcccccccccCCCccccccccccccCccccCCCCCCcccccccCCcCCCccccCCccHHHHH
Q 040925 675 LDHDMVAHVCDFGLAKFLSDHQLDTAVKTPSSSIGLKGTVGYVAPEYGMGSEASMTGDIFTGRRPIDAVFNEGHSLHEFA 754 (833)
Q Consensus 675 l~~~~~~kL~DfG~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~s~~~~~~~~~~~g~~l~~~~ 754 (833)
+++++.+||+|||+|+........ .......||+.|||||++.+..|+.++|||| +|+++||++
T Consensus 178 l~~~~~~Ki~DFGlar~~~~~~~~------~~~~~~~gt~~ymAPE~l~~~~~s~ksDVwS----------fGvvl~El~ 241 (308)
T 4gt4_A 178 VYDKLNVKISDLGLFREVYAADYY------KLLGNSLLPIRWMAPEAIMYGKFSIDSDIWS----------YGVVLWEVF 241 (308)
T ss_dssp ECGGGCEEECCSCCBCGGGGGGCB------CSSSSSCBCGGGCCHHHHHHCCCCHHHHHHH----------HHHHHHHHH
T ss_pred ECCCCCEEECCcccceeccCCCce------eEecccccCCcccCHHHHhCCCCCccchhhh----------HHHHHHHHH
Confidence 999999999999999876543221 1122357999999999999999999999999 778888888
Q ss_pred H-HhCCCcccccccccchhhhccccchhhhhhhhchHHHHHHHHHHhhccCCCCCCCCCCHHHHHHHHHHh
Q 040925 755 K-TALPEKVMEIVDPSLLMEVMTNNSMIQEDKRVKTEECLNAIIRTGVLCSMESPFERMDMRDVVAKLCHT 824 (833)
Q Consensus 755 ~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~i 824 (833)
+ +..|+.... +..+........ ..+.++++++.+.+++.+||+.||++|||++||+++|+..
T Consensus 242 t~g~~Pf~~~~--~~~~~~~i~~~~------~~~~p~~~~~~~~~li~~C~~~dP~~RPs~~ei~~~L~a~ 304 (308)
T 4gt4_A 242 SYGLQPYCGYS--NQDVVEMIRNRQ------VLPCPDDCPAWVYALMIECWNEFPSRRPRFKDIHSRLRAW 304 (308)
T ss_dssp TTTCCTTTTCC--HHHHHHHHHTTC------CCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTS
T ss_pred hCCCCCCCCCC--HHHHHHHHHcCC------CCCCcccchHHHHHHHHHHcCCChhHCcCHHHHHHHHHhc
Confidence 7 666764221 111111111111 1123445778899999999999999999999999999864
No 21
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=2.1e-48 Score=445.81 Aligned_cols=434 Identities=20% Similarity=0.183 Sum_probs=350.4
Q ss_pred cEEEcCCCcCcccCCccccCCCCCCEEEccCCcccccCCccCCCCCCCCEEEcCCCcccccCCccccCCCCCcEEECCCc
Q 040925 2 QTLAVNDNYLTGQLPDFVGNLSDLEVIRIMGNSLGGKIPTTLGLLRNLVSLNVAENKFSGMFPRSICNISSLELIQLALN 81 (833)
Q Consensus 2 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N 81 (833)
++|++++|+++ .+|..+. ++|++|++++|++++..|..|..+++|++|+|++|+|+++.|.+|+++++|++|+|++|
T Consensus 3 ~~l~ls~n~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 79 (520)
T 2z7x_B 3 FLVDRSKNGLI-HVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN 79 (520)
T ss_dssp CEEECTTSCCS-SCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS
T ss_pred ceEecCCCCcc-ccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC
Confidence 58999999999 6887776 89999999999998888899999999999999999999888999999999999999999
Q ss_pred ccccccCchhhcCCCCccEEEccCCccee-eCCccccCCCCCcEEEcccCccccccCcCccCCCcC--ceEecccccC--
Q 040925 82 RFSGNLPFDIVVNLPNLKALAIGGNNFFG-SIPYSLSNASNLELLDLSVNQFKGNVSIDFSSLKNL--LWLNLEQNNL-- 156 (833)
Q Consensus 82 ~l~~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L--~~L~L~~N~l-- 156 (833)
+++ .+|.. .+++|++|+|++|.+++ ..|..|+++++|++|+|++|+|++ ..|..+++| ++|+|++|.+
T Consensus 80 ~l~-~lp~~---~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~ 152 (520)
T 2z7x_B 80 KLV-KISCH---PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYG 152 (520)
T ss_dssp CCC-EEECC---CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTT
T ss_pred cee-ecCcc---ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeecccccc
Confidence 998 78876 79999999999999987 468999999999999999999985 468888888 9999999998
Q ss_pred CCCCCCCcccc--------------------cccCCCCCCCEEEccCCc-------CcccCChhHhhhcccccEEEccCc
Q 040925 157 GTGTATDLDFV--------------------TFLTNCSSLKALSLADNQ-------FGGELPHSIANLSSTVINFGIGRN 209 (833)
Q Consensus 157 ~~~~~~~~~~~--------------------~~l~~l~~L~~L~Ls~N~-------l~~~~p~~~~~l~~~l~~L~l~~n 209 (833)
....+..+... ..+.++++|+.|++++|+ +.+.+| .+..+. .++.|++++|
T Consensus 153 ~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~-~L~~L~l~~~ 230 (520)
T 2z7x_B 153 EKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNP-KLSNLTLNNI 230 (520)
T ss_dssp SSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCT-TCCEEEEEEE
T ss_pred cccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhcccc-chhhcccccc
Confidence 43333222111 123457777777777776 554444 444443 4777777777
Q ss_pred cccccCChhhh---cCCCCCeEeccCCcccccCCccc-----cCCCCCCEEEcccccCcccCC-ccccCC---CCCCeEE
Q 040925 210 QISGTIPPGIR---NLVNLIGFGAEENQLHGTIPDAI-----GELKNLQKLCLFRNFLQGRIP-SGLGNL---TKLANLE 277 (833)
Q Consensus 210 ~i~~~~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~-----~~l~~L~~L~L~~N~l~~~~~-~~~~~l---~~L~~L~ 277 (833)
.+++..+..+. ..++|++|++++|++.+.+|..+ +.+++|+.+++++|.+ .+| ..+..+ .+|+.|+
T Consensus 231 ~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~ 308 (520)
T 2z7x_B 231 ETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFT 308 (520)
T ss_dssp EEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEE
T ss_pred ccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEE
Confidence 77654333222 24578888888888887788777 7888888888888888 244 444444 6788888
Q ss_pred eecccccCCCCCCCCCCCccceeecCCceecccCCcccccccccceeeecCCCccCC--CCCcccccCCCcCEEeccCCc
Q 040925 278 LSSNSLQGNIPSSLGNCQNLMSFTASQNKLTGALPHQLLSITTLSLYLDLSNNLLNG--SLPLQVGHLKNLVILDISSNQ 355 (833)
Q Consensus 278 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~ll~~L~ls~N~l~~--~~~~~~~~l~~L~~L~ls~N~ 355 (833)
+++|.+.... .+..+++|++|++++|++++.+|..+..+..+ ++|++++|.+++ ..|..|+.+++|++|++++|.
T Consensus 309 l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L-~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~ 385 (520)
T 2z7x_B 309 VSGTRMVHML--CPSKISPFLHLDFSNNLLTDTVFENCGHLTEL-ETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNS 385 (520)
T ss_dssp EESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSC-CEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSC
T ss_pred cCCCcccccc--chhhCCcccEEEeECCccChhhhhhhccCCCC-CEEEccCCccCccccchHHHhhCCCCCEEECCCCc
Confidence 8888876432 23678899999999999997788888888877 789999999986 345678899999999999999
Q ss_pred CCC-CCCccccCCCCCcEEeecCCccccccCccccCCCCCCeEEccCcccCCCchhhhcCCCCCceEECccCcCccccCC
Q 040925 356 FSG-VIPGTLSTCVCLEYLDISSNSFHGVIPLSLSFLKSIKELNVSSNNLSGQIPEFLKNLSVLEFLSLSYNHFEGEVPT 434 (833)
Q Consensus 356 l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~ 434 (833)
+++ +++..|..+++|++|++++|++++..|..+. ++|+.|++++|+++ .+|..+..+++|+.|++++|+++..++.
T Consensus 386 l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~ 462 (520)
T 2z7x_B 386 VSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDG 462 (520)
T ss_dssp CBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCCTT
T ss_pred CCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCccCHH
Confidence 987 4445688899999999999999877766654 78999999999998 6777777999999999999999976665
Q ss_pred -CCccCCCccccccCCcCCCCC
Q 040925 435 -KGVFSNKTKISLQGNMKLCGG 455 (833)
Q Consensus 435 -~~~~~~~~~l~l~~N~~~c~~ 455 (833)
...+.+++.+++++|++.|..
T Consensus 463 ~~~~l~~L~~L~l~~N~~~c~c 484 (520)
T 2z7x_B 463 IFDRLTSLQKIWLHTNPWDCSC 484 (520)
T ss_dssp TTTTCTTCCEEECCSSCBCCCH
T ss_pred HhccCCcccEEECcCCCCcccC
Confidence 566788889999999988854
No 22
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=2.7e-48 Score=448.33 Aligned_cols=436 Identities=21% Similarity=0.271 Sum_probs=307.2
Q ss_pred CcEEEcCCCcCcccCCccccCCCCCCEEEccCCcccccCCccCCCCCCCCEEEcCCCcccccCCccccCCCCCcEEECCC
Q 040925 1 LQTLAVNDNYLTGQLPDFVGNLSDLEVIRIMGNSLGGKIPTTLGLLRNLVSLNVAENKFSGMFPRSICNISSLELIQLAL 80 (833)
Q Consensus 1 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~ 80 (833)
|++|+|++|++++..|.+|.++++|++|++++|++++..|++|+.+++|++|+|++|++++..|..|+++++|++|+|++
T Consensus 28 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 107 (549)
T 2z81_A 28 MKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMG 107 (549)
T ss_dssp CCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTT
T ss_pred ccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCC
Confidence 56777777777766677777777777777777777777777777777777777777777766666677777777777777
Q ss_pred cccccccCchhhcCCCCccEEEccCCc-ceeeCCccccCCCCCcEEEcccCccccccCcCccCCCcCceEecccccCCCC
Q 040925 81 NRFSGNLPFDIVVNLPNLKALAIGGNN-FFGSIPYSLSNASNLELLDLSVNQFKGNVSIDFSSLKNLLWLNLEQNNLGTG 159 (833)
Q Consensus 81 N~l~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~ 159 (833)
|++++.-.+..|.++++|++|+|++|. +....+..|.++++|++|++++|++++..+..|..+++|++|++++|.+..+
T Consensus 108 n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~ 187 (549)
T 2z81_A 108 NPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFL 187 (549)
T ss_dssp CCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTH
T ss_pred CcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCccccc
Confidence 777621122456677777777777776 4444445677777777777777777776777777777777777766665432
Q ss_pred CCCCcccccccCCCCCCCEEEccCCcCcccC--ChhHhhhcccccEEEccCccccccCChh----hhcCCCCCeEeccCC
Q 040925 160 TATDLDFVTFLTNCSSLKALSLADNQFGGEL--PHSIANLSSTVINFGIGRNQISGTIPPG----IRNLVNLIGFGAEEN 233 (833)
Q Consensus 160 ~~~~~~~~~~l~~l~~L~~L~Ls~N~l~~~~--p~~~~~l~~~l~~L~l~~n~i~~~~~~~----~~~l~~L~~L~L~~N 233 (833)
+. ..+..+++|++|++++|++++.. |..+......++.|++++|.+++..+.. +..+++|+.|++++|
T Consensus 188 ~~------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~ 261 (549)
T 2z81_A 188 LE------IFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDC 261 (549)
T ss_dssp HH------HHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESC
T ss_pred ch------hhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccc
Confidence 21 11334667777777777766421 2222233334555666665555433322 234455555555555
Q ss_pred cccccC-----------------------------------CccccCCCCCCEEEcccccCcccCCccc-cCCCCCCeEE
Q 040925 234 QLHGTI-----------------------------------PDAIGELKNLQKLCLFRNFLQGRIPSGL-GNLTKLANLE 277 (833)
Q Consensus 234 ~l~~~~-----------------------------------~~~~~~l~~L~~L~L~~N~l~~~~~~~~-~~l~~L~~L~ 277 (833)
.+.+.. +..+...++|++|++++|.+. .+|..+ .++++|++|+
T Consensus 262 ~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~ 340 (549)
T 2z81_A 262 TLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLD 340 (549)
T ss_dssp EEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEE
T ss_pred cccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEE
Confidence 544321 111233457888888888887 566555 5789999999
Q ss_pred eecccccCCCC---CCCCCCCccceeecCCceecccCC---cccccccccceeeecCCCccCCCCCcccccCCCcCEEec
Q 040925 278 LSSNSLQGNIP---SSLGNCQNLMSFTASQNKLTGALP---HQLLSITTLSLYLDLSNNLLNGSLPLQVGHLKNLVILDI 351 (833)
Q Consensus 278 L~~N~l~~~~~---~~~~~l~~L~~L~l~~N~l~~~~p---~~~~~~~~ll~~L~ls~N~l~~~~~~~~~~l~~L~~L~l 351 (833)
|++|++++..| ..++.+++|+.|++++|++++ +| ..+..+..+ ++|++++|+++ .+|..+..+++|++|++
T Consensus 341 Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~~~l~~L-~~L~Ls~N~l~-~lp~~~~~~~~L~~L~L 417 (549)
T 2z81_A 341 LSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRS-MQKTGEILLTLKNL-TSLDISRNTFH-PMPDSCQWPEKMRFLNL 417 (549)
T ss_dssp CCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCC-HHHHHHHGGGCTTC-CEEECTTCCCC-CCCSCCCCCTTCCEEEC
T ss_pred ccCCccccccccchhhhhccccCcEEEccCCcccc-cccchhhhhcCCCC-CEEECCCCCCc-cCChhhcccccccEEEC
Confidence 99999987653 457888999999999999984 33 345666666 78999999998 67888888999999999
Q ss_pred cCCcCCCCCCccccCCCCCcEEeecCCccccccCccccCCCCCCeEEccCcccCCCchhhhcCCCCCceEECccCcCccc
Q 040925 352 SSNQFSGVIPGTLSTCVCLEYLDISSNSFHGVIPLSLSFLKSIKELNVSSNNLSGQIPEFLKNLSVLEFLSLSYNHFEGE 431 (833)
Q Consensus 352 s~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~ 431 (833)
++|+++.+ |..+ .++|++|+|++|++++.+ ..+++|++|+|++|+|+ .+|. ...+++|+.|+|++|++++.
T Consensus 418 s~N~l~~l-~~~~--~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~ 488 (549)
T 2z81_A 418 SSTGIRVV-KTCI--PQTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSV 488 (549)
T ss_dssp TTSCCSCC-CTTS--CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCC
T ss_pred CCCCcccc-cchh--cCCceEEECCCCChhhhc----ccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCc
Confidence 99999844 3333 258999999999998653 57889999999999998 4555 46789999999999999998
Q ss_pred cCC-CCccCCCccccccCCcCCCCC
Q 040925 432 VPT-KGVFSNKTKISLQGNMKLCGG 455 (833)
Q Consensus 432 ~~~-~~~~~~~~~l~l~~N~~~c~~ 455 (833)
+|. ...+.+++.+++++|+|.|..
T Consensus 489 ~~~~~~~l~~L~~L~l~~N~~~~~~ 513 (549)
T 2z81_A 489 PDGIFDRLTSLQKIWLHTNPWDCSC 513 (549)
T ss_dssp CTTGGGGCTTCCEEECCSSCBCCCH
T ss_pred CHHHHhcCcccCEEEecCCCccCCC
Confidence 886 467888999999999998854
No 23
>4aw0_A HPDK1, 3-phosphoinositide-dependent protein kinase 1; transferase, allosteric regulation, allosteric site, phosphorylation, AGC protein kinase; HET: SEP ATP MJF; 1.43A {Homo sapiens} PDB: 3hrc_A* 3hrf_A* 4a06_A* 4a07_A* 3rcj_A* 4aw1_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* 1uu3_A* ...
Probab=100.00 E-value=6.9e-50 Score=414.75 Aligned_cols=250 Identities=20% Similarity=0.304 Sum_probs=208.2
Q ss_pred cCCccCceeccCcceEEEEEEECCCceEEEEEEeecc---CCcchhHHHHHHHHHhhcCCCccceEeeEeecCCCCCCce
Q 040925 531 GEFSSSNMIGQGSFGYVYKGTLGEDEMIVAVKVINLK---YKGASRSFVAECEALRNIRHRNLIKIITICSSTDFKGTDF 607 (833)
Q Consensus 531 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~---~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~ 607 (833)
++|++.+.||+|+||+||+|++..+++.||||+++.. .....+.+.+|++++++++|||||++++++.+.+ .
T Consensus 32 ~dy~i~~~lG~G~fg~V~~a~~~~~~~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~-----~ 106 (311)
T 4aw0_A 32 EDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYFTFQDDE-----K 106 (311)
T ss_dssp GGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSS-----E
T ss_pred cccEEEEEEecccCeEEEEEEECCCCCEEEEEEEEHHHCCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCC-----E
Confidence 5799999999999999999999999999999999743 2334567999999999999999999999976554 8
Q ss_pred EeEEEEecCCCChhhhhccCCCccccccCCHHHHHHHHHHHHHHHHHHhhcCCCCceeeCCCCCCeeecCCCcEEEcccc
Q 040925 608 KAFVFEYMENGSLKDWLHQSDDQVEVCKLSLIQRVNIAIDVASAMEYLHHHCQPPMVHGDLKPSNVLLDHDMVAHVCDFG 687 (833)
Q Consensus 608 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~gL~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kL~DfG 687 (833)
.|+|||||+||+|.+++...+ .+++.+++.|+.||+.||+|||++ +||||||||+|||++.++.+||+|||
T Consensus 107 ~yivmEy~~gG~L~~~i~~~~------~l~e~~~~~~~~qi~~al~ylH~~---~IiHRDlKPeNILl~~~g~vKl~DFG 177 (311)
T 4aw0_A 107 LYFGLSYAKNGELLKYIRKIG------SFDETCTRFYTAEIVSALEYLHGK---GIIHRDLKPENILLNEDMHIQITDFG 177 (311)
T ss_dssp EEEEECCCTTEEHHHHHHHHS------SCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTSCEEECCCT
T ss_pred EEEEEecCCCCCHHHHHHHcC------CCCHHHHHHHHHHHHHHHHHHHHC---CCccCCCCHHHeEEcCCCCEEEEEcC
Confidence 999999999999999998654 799999999999999999999999 99999999999999999999999999
Q ss_pred cccccCcccccccccCCCccccccccccccCccccCCCCCCcccccccCCcCCCccccCCccHHHHHHHhCCCccccccc
Q 040925 688 LAKFLSDHQLDTAVKTPSSSIGLKGTVGYVAPEYGMGSEASMTGDIFTGRRPIDAVFNEGHSLHEFAKTALPEKVMEIVD 767 (833)
Q Consensus 688 ~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~s~~~~~~~~~~~g~~l~~~~~~~~p~~~~~~~~ 767 (833)
+|+.+..... .......+||+.|||||++.+..|+.++|||| .|+++|++++|..|+.....
T Consensus 178 la~~~~~~~~------~~~~~~~~GTp~YmAPEvl~~~~y~~~~DiWS----------lGvilyeml~G~~PF~~~~~-- 239 (311)
T 4aw0_A 178 TAKVLSPESK------QARANSFVGTAQYVSPELLTEKSACKSSDLWA----------LGCIIYQLVAGLPPFRAGNE-- 239 (311)
T ss_dssp TCEECCTTTT------CCCBCCCCSCGGGCCHHHHHHSCBCHHHHHHH----------HHHHHHHHHHSSCSSCCSSH--
T ss_pred CceecCCCCC------cccccCcccCcccCCHHHHcCCCCCcHHHHHH----------HHHHHHHHHhCCCCCCCCCH--
Confidence 9987654321 12233568999999999999999999999999 89999999999999863221
Q ss_pred ccchhhhccccchhhhhhhhchHHHHHHHHHHhhccCCCCCCCCCCHHHHHH
Q 040925 768 PSLLMEVMTNNSMIQEDKRVKTEECLNAIIRTGVLCSMESPFERMDMRDVVA 819 (833)
Q Consensus 768 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~ 819 (833)
............. .++.+++++.+++.+||+.||++|||++|++.
T Consensus 240 ~~~~~~i~~~~~~-------~p~~~s~~~~dli~~lL~~dp~~R~t~~e~~~ 284 (311)
T 4aw0_A 240 GLIFAKIIKLEYD-------FPEKFFPKARDLVEKLLVLDATKRLGCEEMEG 284 (311)
T ss_dssp HHHHHHHHHTCCC-------CCTTCCHHHHHHHHHHSCSSGGGSTTSGGGTC
T ss_pred HHHHHHHHcCCCC-------CCcccCHHHHHHHHHHccCCHhHCcChHHHcC
Confidence 1111111111111 12234567889999999999999999998743
No 24
>4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens}
Probab=100.00 E-value=4.1e-49 Score=425.66 Aligned_cols=251 Identities=21% Similarity=0.289 Sum_probs=209.5
Q ss_pred cCCccCceeccCcceEEEEEEECCCceEEEEEEeeccCCcchhHHHHHHHHHhhcCCCccceEeeEeecCCCCCCceEeE
Q 040925 531 GEFSSSNMIGQGSFGYVYKGTLGEDEMIVAVKVINLKYKGASRSFVAECEALRNIRHRNLIKIITICSSTDFKGTDFKAF 610 (833)
Q Consensus 531 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~~l 610 (833)
+.|++.+.||+|+||.||+|+++.+|+.||||+++.......+.+.+|+++|++++|||||++++++.+.+ ..|+
T Consensus 151 ~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~-----~~~i 225 (423)
T 4fie_A 151 SYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGD-----ELWV 225 (423)
T ss_dssp GTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEESTTCSSGGGHHHHHHHHHHCCCTTBCCEEEEEEETT-----EEEE
T ss_pred HhcEeeeEeccCcCcEEEEEEECCCCCEEEEEEEeccchhHHHHHHHHHHHHHhCCCCCCCceEEEEEECC-----EEEE
Confidence 56999999999999999999999999999999998766666778999999999999999999999977655 8999
Q ss_pred EEEecCCCChhhhhccCCCccccccCCHHHHHHHHHHHHHHHHHHhhcCCCCceeeCCCCCCeeecCCCcEEEccccccc
Q 040925 611 VFEYMENGSLKDWLHQSDDQVEVCKLSLIQRVNIAIDVASAMEYLHHHCQPPMVHGDLKPSNVLLDHDMVAHVCDFGLAK 690 (833)
Q Consensus 611 v~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~gL~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kL~DfG~a~ 690 (833)
|||||+||+|.+++... .+++.++..|+.||+.||+|||++ +||||||||+|||++.+|.+||+|||+|+
T Consensus 226 VmEy~~gG~L~~~i~~~-------~l~e~~~~~~~~qil~aL~ylH~~---~IiHRDiKp~NILl~~~g~vKl~DFGla~ 295 (423)
T 4fie_A 226 VMEFLEGGALTDIVTHT-------RMNEEQIAAVCLAVLQALSVLHAQ---GVIHRDIKSDSILLTHDGRVKLSDFGFCA 295 (423)
T ss_dssp EEECCTTEEHHHHHHHS-------CCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSTTTEEECTTCCEEECCCTTCE
T ss_pred EEeCCCCCcHHHHHhcc-------CCCHHHHHHHHHHHHHHHHHHHHC---CeecccCCHHHEEEcCCCCEEEecCccce
Confidence 99999999999999753 589999999999999999999999 99999999999999999999999999998
Q ss_pred ccCcccccccccCCCccccccccccccCccccCCCCCCcccccccCCcCCCccccCCccHHHHHHHhCCCcccccccccc
Q 040925 691 FLSDHQLDTAVKTPSSSIGLKGTVGYVAPEYGMGSEASMTGDIFTGRRPIDAVFNEGHSLHEFAKTALPEKVMEIVDPSL 770 (833)
Q Consensus 691 ~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~s~~~~~~~~~~~g~~l~~~~~~~~p~~~~~~~~~~~ 770 (833)
.+.... ......+||+.|||||++.+..|+.++|||| .|+++|++++|..|+......+ .
T Consensus 296 ~~~~~~--------~~~~~~~GTp~YmAPEvl~~~~y~~~~DiWS----------lGvilyeml~G~~PF~~~~~~~--~ 355 (423)
T 4fie_A 296 QVSKEV--------PRRKSLVGTPYWMAPELISRLPYGPEVDIWS----------LGIMVIEMVDGEPPYFNEPPLK--A 355 (423)
T ss_dssp ECCSSC--------CCBCCCEECTTTCCHHHHTTCCBCTHHHHHH----------HHHHHHHHHHSSCTTTTSCHHH--H
T ss_pred ECCCCC--------ccccccccCcCcCCHHHHCCCCCCcHHHHHH----------HHHHHHHHHHCCCCCCCcCHHH--H
Confidence 765422 1223468999999999999999999999999 8999999999999975322111 1
Q ss_pred hhhhccccchhhhhhhhchHHHHHHHHHHhhccCCCCCCCCCCHHHHHHH
Q 040925 771 LMEVMTNNSMIQEDKRVKTEECLNAIIRTGVLCSMESPFERMDMRDVVAK 820 (833)
Q Consensus 771 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~ 820 (833)
. ..+.... .........+++.+.+++.+||..||++|||++|+++.
T Consensus 356 ~-~~i~~~~---~~~~~~~~~~s~~~~dli~~~L~~dP~~R~ta~ell~H 401 (423)
T 4fie_A 356 M-KMIRDNL---PPRLKNLHKVSPSLKGFLDRLLVRDPAQRATAAELLKH 401 (423)
T ss_dssp H-HHHHHSC---CCCCSCTTSSCHHHHHHHHHHSCSSTTTSCCHHHHTTC
T ss_pred H-HHHHcCC---CCCCcccccCCHHHHHHHHHHcCCChhHCcCHHHHhcC
Confidence 1 1111100 00011122345678899999999999999999999874
No 25
>3fpq_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase, ATP-BIND kinase, nucleotide-binding, phosphoprotein; 1.80A {Rattus norvegicus}
Probab=100.00 E-value=9.3e-49 Score=404.87 Aligned_cols=252 Identities=23% Similarity=0.334 Sum_probs=199.9
Q ss_pred CC-ccCceeccCcceEEEEEEECCCceEEEEEEeeccC--CcchhHHHHHHHHHhhcCCCccceEeeEeecCCCCCCceE
Q 040925 532 EF-SSSNMIGQGSFGYVYKGTLGEDEMIVAVKVINLKY--KGASRSFVAECEALRNIRHRNLIKIITICSSTDFKGTDFK 608 (833)
Q Consensus 532 ~y-~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~ 608 (833)
+| ++.+.||+|+||+||+|++..+++.||+|++.... ....+.+.+|++++++++|||||++++++.+.. .+....
T Consensus 26 r~~~~~~~iG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~-~~~~~~ 104 (290)
T 3fpq_A 26 RFLKFDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYDSWESTV-KGKKCI 104 (290)
T ss_dssp SEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEEEE-TTEEEE
T ss_pred ceEEeeeEEecCcCcEEEEEEECCCCeEEEEEEEchhhCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEeecc-CCCcEE
Confidence 44 56678999999999999999999999999997442 223467999999999999999999999976531 234578
Q ss_pred eEEEEecCCCChhhhhccCCCccccccCCHHHHHHHHHHHHHHHHHHhhcCCCC--ceeeCCCCCCeeec-CCCcEEEcc
Q 040925 609 AFVFEYMENGSLKDWLHQSDDQVEVCKLSLIQRVNIAIDVASAMEYLHHHCQPP--MVHGDLKPSNVLLD-HDMVAHVCD 685 (833)
Q Consensus 609 ~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~gL~~LH~~~~~~--ivH~Dlkp~NIll~-~~~~~kL~D 685 (833)
|+|||||++|+|.+++.+.. .+++..++.|+.||+.||+|||++ + ||||||||+|||++ .++.+||+|
T Consensus 105 ~lvmEy~~gg~L~~~l~~~~------~l~~~~~~~~~~qi~~aL~ylH~~---~~~IiHRDlKp~NILl~~~~g~vKl~D 175 (290)
T 3fpq_A 105 VLVTELMTSGTLKTYLKRFK------VMKIKVLRSWCRQILKGLQFLHTR---TPPIIHRDLKCDNIFITGPTGSVKIGD 175 (290)
T ss_dssp EEEEECCCSCBHHHHHHHHS------SCCHHHHHHHHHHHHHHHHHHHTS---SSCCCCCCCCGGGEEESSTTSCEEECC
T ss_pred EEEEeCCCCCCHHHHHHhcC------CCCHHHHHHHHHHHHHHHHHHHHC---CCCEEecccChhheeEECCCCCEEEEe
Confidence 99999999999999998654 789999999999999999999998 6 99999999999997 479999999
Q ss_pred cccccccCcccccccccCCCccccccccccccCccccCCCCCCcccccccCCcCCCccccCCccHHHHHHHhCCCccccc
Q 040925 686 FGLAKFLSDHQLDTAVKTPSSSIGLKGTVGYVAPEYGMGSEASMTGDIFTGRRPIDAVFNEGHSLHEFAKTALPEKVMEI 765 (833)
Q Consensus 686 fG~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~s~~~~~~~~~~~g~~l~~~~~~~~p~~~~~~ 765 (833)
||+|+..... .....+||+.|||||++.+ .|+.++|||| +|+++|+++++..|+....
T Consensus 176 FGla~~~~~~----------~~~~~~GTp~YmAPE~~~~-~y~~~~DiwS----------lGvilyelltg~~Pf~~~~- 233 (290)
T 3fpq_A 176 LGLATLKRAS----------FAKAVIGTPEFMAPEMYEE-KYDESVDVYA----------FGMCMLEMATSEYPYSECQ- 233 (290)
T ss_dssp TTGGGGCCTT----------SBEESCSSCCCCCGGGGGT-CCCTHHHHHH----------HHHHHHHHHHSSCTTTTCS-
T ss_pred CcCCEeCCCC----------ccCCcccCccccCHHHcCC-CCCcHHHHHH----------HHHHHHHHHHCCCCCCCCC-
Confidence 9999754321 1234679999999998865 6999999999 8999999999999985221
Q ss_pred ccccchhhhccccchhhhhhhhchHHHHHHHHHHhhccCCCCCCCCCCHHHHHHH
Q 040925 766 VDPSLLMEVMTNNSMIQEDKRVKTEECLNAIIRTGVLCSMESPFERMDMRDVVAK 820 (833)
Q Consensus 766 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~ 820 (833)
+.......+...... ...+..+++++.+++.+||+.||++|||++|+++.
T Consensus 234 -~~~~~~~~i~~~~~~----~~~~~~~~~~~~~li~~~L~~dP~~R~s~~e~l~H 283 (290)
T 3fpq_A 234 -NAAQIYRRVTSGVKP----ASFDKVAIPEVKEIIEGCIRQNKDERYSIKDLLNH 283 (290)
T ss_dssp -SHHHHHHHHTTTCCC----GGGGGCCCHHHHHHHHHHSCSSGGGSCCHHHHHTS
T ss_pred -cHHHHHHHHHcCCCC----CCCCccCCHHHHHHHHHHccCChhHCcCHHHHhcC
Confidence 111111111111100 01112234568899999999999999999999763
No 26
>3hyh_A Carbon catabolite-derepressing protein kinase; kinase domain, transferase, ATP-binding, carbohydrate metabo kinase, membrane; 2.20A {Saccharomyces cerevisiae} PDB: 3dae_A 2fh9_A 3mn3_A
Probab=100.00 E-value=7.7e-49 Score=401.65 Aligned_cols=248 Identities=27% Similarity=0.374 Sum_probs=192.3
Q ss_pred hcCCccCceeccCcceEEEEEEECCCceEEEEEEeeccC---CcchhHHHHHHHHHhhcCCCccceEeeEeecCCCCCCc
Q 040925 530 TGEFSSSNMIGQGSFGYVYKGTLGEDEMIVAVKVINLKY---KGASRSFVAECEALRNIRHRNLIKIITICSSTDFKGTD 606 (833)
Q Consensus 530 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~ 606 (833)
.++|++.+.||+|+||+||+|++..+++.||||+++... ....+.+.+|++++++++|||||++++++.+.+
T Consensus 12 ig~Y~i~~~lG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~~----- 86 (275)
T 3hyh_A 12 IGNYQIVKTLGEGSFGKVKLAYHTTTGQKVALKIINKKVLAKSDMQGRIEREISYLRLLRHPHIIKLYDVIKSKD----- 86 (275)
T ss_dssp --CCEEEEEEEC---CCEEEEECTTTCCEEEEEEEECC------CHHHHHHHHHHHHHCCCTTBCCEEEEEECSS-----
T ss_pred eeCeEEEEEEecCcCeEEEEEEECCCCCEEEEEEEeHHHcCCHHHHHHHHHHHHHHHHCCCCCCCeEEEEEEECC-----
Confidence 478999999999999999999999999999999997442 233467999999999999999999999976554
Q ss_pred eEeEEEEecCCCChhhhhccCCCccccccCCHHHHHHHHHHHHHHHHHHhhcCCCCceeeCCCCCCeeecCCCcEEEccc
Q 040925 607 FKAFVFEYMENGSLKDWLHQSDDQVEVCKLSLIQRVNIAIDVASAMEYLHHHCQPPMVHGDLKPSNVLLDHDMVAHVCDF 686 (833)
Q Consensus 607 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~gL~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kL~Df 686 (833)
..|+||||| +|+|.+++...+ .+++.+++.++.||+.||+|||++ +|+||||||+|||+++++.+||+||
T Consensus 87 ~~~ivmEy~-~g~L~~~l~~~~------~l~e~~~~~~~~qi~~al~ylH~~---~IiHRDiKP~NILl~~~~~vkl~DF 156 (275)
T 3hyh_A 87 EIIMVIEYA-GNELFDYIVQRD------KMSEQEARRFFQQIISAVEYCHRH---KIVHRDLKPENLLLDEHLNVKIADF 156 (275)
T ss_dssp EEEEEEECC-CEEHHHHHHHSC------SCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCTTTEEECTTCCEEECCS
T ss_pred EEEEEEeCC-CCCHHHHHHHcC------CCCHHHHHHHHHHHHHHHHHHHHC---CcccccCChHHeEECCCCCEEEeec
Confidence 899999999 679999998765 799999999999999999999999 9999999999999999999999999
Q ss_pred ccccccCcccccccccCCCccccccccccccCccccCCCCC-CcccccccCCcCCCccccCCccHHHHHHHhCCCccccc
Q 040925 687 GLAKFLSDHQLDTAVKTPSSSIGLKGTVGYVAPEYGMGSEA-SMTGDIFTGRRPIDAVFNEGHSLHEFAKTALPEKVMEI 765 (833)
Q Consensus 687 G~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~-~~~~Di~s~~~~~~~~~~~g~~l~~~~~~~~p~~~~~~ 765 (833)
|+|+...... .....+||+.|||||++.+..+ +.++|||| .|+++|+++++..|+.....
T Consensus 157 Gla~~~~~~~---------~~~~~~GT~~Y~APE~~~~~~y~~~~~DiwS----------lGvily~lltg~~PF~~~~~ 217 (275)
T 3hyh_A 157 GLSNIMTDGN---------FLKTSCGSPNYAAPEVISGKLYAGPEVDVWS----------CGVILYVMLCRRLPFDDESI 217 (275)
T ss_dssp SCC------------------------CTTSCHHHHSSSSCCCTHHHHHH----------HHHHHHHHHHSSCSSCCSSH
T ss_pred CCCeecCCCC---------ccCCeeECcccCChhhhcCCCCCCChhhhHH----------HHHHHHHHHHCCCCCCCCCH
Confidence 9998654422 1223579999999999998886 57999999 89999999999999863211
Q ss_pred ccccchhhhccccchhhhhhhhchHHHHHHHHHHhhccCCCCCCCCCCHHHHHHH
Q 040925 766 VDPSLLMEVMTNNSMIQEDKRVKTEECLNAIIRTGVLCSMESPFERMDMRDVVAK 820 (833)
Q Consensus 766 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~ 820 (833)
............ ..+..+++.+.+++.+||+.||++|||++|+++.
T Consensus 218 --~~~~~~i~~~~~-------~~p~~~s~~~~~li~~~L~~dP~~R~s~~eil~h 263 (275)
T 3hyh_A 218 --PVLFKNISNGVY-------TLPKFLSPGAAGLIKRMLIVNPLNRISIHEIMQD 263 (275)
T ss_dssp --HHHHHHHHHTCC-------CCCTTSCHHHHHHHHHHSCSSGGGSCCHHHHHHC
T ss_pred --HHHHHHHHcCCC-------CCCCCCCHHHHHHHHHHccCChhHCcCHHHHHcC
Confidence 111111111111 1122345678899999999999999999999874
No 27
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=9.7e-48 Score=454.68 Aligned_cols=435 Identities=20% Similarity=0.221 Sum_probs=360.1
Q ss_pred CcEEEcCCCcCcccCCccccCCCCCCEEEc-cCCcccccCCccC------------------------------------
Q 040925 1 LQTLAVNDNYLTGQLPDFVGNLSDLEVIRI-MGNSLGGKIPTTL------------------------------------ 43 (833)
Q Consensus 1 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l-~~n~l~~~~~~~~------------------------------------ 43 (833)
++.|+|++|+++|.+|++|++|++|++|+| ++|.+.+..|-..
T Consensus 325 V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~ 404 (876)
T 4ecn_A 325 VTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLL 404 (876)
T ss_dssp EEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHH
T ss_pred EEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHH
Confidence 367999999999999999999999999999 8998766533210
Q ss_pred ---------------CCCCCCCEEEcCC--CcccccCCccccCCCCCcEEECCCccccc-----------------ccCc
Q 040925 44 ---------------GLLRNLVSLNVAE--NKFSGMFPRSICNISSLELIQLALNRFSG-----------------NLPF 89 (833)
Q Consensus 44 ---------------~~l~~L~~L~L~~--n~i~~~~~~~~~~l~~L~~L~L~~N~l~~-----------------~~~~ 89 (833)
.....++.+.+.. |++++ +|..|+++++|+.|+|++|++++ .+|.
T Consensus 405 ~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~ 483 (876)
T 4ecn_A 405 QDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENE 483 (876)
T ss_dssp HHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTS
T ss_pred HHHhhhCccccccccccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCCh
Confidence 1223344444544 88887 89999999999999999999996 3887
Q ss_pred hh-hcCCCCccEEEccCCcceeeCCccccCCCCCcEEEcccCc-ccc-ccCcCccCC-------CcCceEecccccCCCC
Q 040925 90 DI-VVNLPNLKALAIGGNNFFGSIPYSLSNASNLELLDLSVNQ-FKG-NVSIDFSSL-------KNLLWLNLEQNNLGTG 159 (833)
Q Consensus 90 ~~-~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~-i~~-~~~~~~~~l-------~~L~~L~L~~N~l~~~ 159 (833)
.+ |.++++|++|+|++|.+.+.+|..|+++++|++|+|++|+ +++ ..|..|..+ ++|++|+|++|+++.+
T Consensus 484 ~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~i 563 (876)
T 4ecn_A 484 ELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEF 563 (876)
T ss_dssp CCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBC
T ss_pred hhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCcc
Confidence 76 6699999999999999999999999999999999999998 887 455555544 5999999999999854
Q ss_pred CCCCcccccccCCCCCCCEEEccCCcCcccCChhHhhhcccccEEEccCccccccCChhhhcCCC-CCeEeccCCccccc
Q 040925 160 TATDLDFVTFLTNCSSLKALSLADNQFGGELPHSIANLSSTVINFGIGRNQISGTIPPGIRNLVN-LIGFGAEENQLHGT 238 (833)
Q Consensus 160 ~~~~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~l~~L~l~~n~i~~~~~~~~~~l~~-L~~L~L~~N~l~~~ 238 (833)
+. ...+.++++|++|+|++|+++ .+| .+..+. .++.|++++|+++ .+|..+.++++ |+.|+|++|+++ .
T Consensus 564 p~-----~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~-~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~ 633 (876)
T 4ecn_A 564 PA-----SASLQKMVKLGLLDCVHNKVR-HLE-AFGTNV-KLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-Y 633 (876)
T ss_dssp CC-----HHHHTTCTTCCEEECTTSCCC-BCC-CCCTTS-EESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-S
T ss_pred CC-----hhhhhcCCCCCEEECCCCCcc-cch-hhcCCC-cceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-c
Confidence 42 015889999999999999999 888 676665 4889999999999 88888999999 999999999999 6
Q ss_pred CCccccCCCC--CCEEEcccccCcccCCccc---c--CCCCCCeEEeecccccCCCCCCCCCCCccceeecCCceecccC
Q 040925 239 IPDAIGELKN--LQKLCLFRNFLQGRIPSGL---G--NLTKLANLELSSNSLQGNIPSSLGNCQNLMSFTASQNKLTGAL 311 (833)
Q Consensus 239 ~~~~~~~l~~--L~~L~L~~N~l~~~~~~~~---~--~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~ 311 (833)
+|..|..+.. |+.|+|++|.+.+.+|... . .+++|+.|+|++|+++...+..+..+++|+.|+|++|+++ .+
T Consensus 634 lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~i 712 (876)
T 4ecn_A 634 IPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SI 712 (876)
T ss_dssp CCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CC
T ss_pred CchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-cc
Confidence 7888887754 9999999999998666432 2 3458999999999999544445568999999999999999 88
Q ss_pred Cccccccc--------ccceeeecCCCccCCCCCcccc--cCCCcCEEeccCCcCCCCCCccccCCCCCcEEeecC----
Q 040925 312 PHQLLSIT--------TLSLYLDLSNNLLNGSLPLQVG--HLKNLVILDISSNQFSGVIPGTLSTCVCLEYLDISS---- 377 (833)
Q Consensus 312 p~~~~~~~--------~ll~~L~ls~N~l~~~~~~~~~--~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~Ls~---- 377 (833)
|..++... .+ +.|+|++|+++ .+|..+. .+++|+.|+|++|++++ +|..+..+++|+.|+|++
T Consensus 713 p~~~~~~~~~~l~nl~~L-~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~l 789 (876)
T 4ecn_A 713 PENSLKPKDGNYKNTYLL-TTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDA 789 (876)
T ss_dssp CTTSSSCTTSCCTTGGGC-CEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCT
T ss_pred ChHHhccccccccccCCc-cEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCc
Confidence 88776654 44 89999999999 6788887 99999999999999997 688899999999999977
Q ss_pred --CccccccCccccCCCCCCeEEccCcccCCCchhhhcCCCCCceEECccCcCccccCCCC-ccCCCccccccCCcCCC
Q 040925 378 --NSFHGVIPLSLSFLKSIKELNVSSNNLSGQIPEFLKNLSVLEFLSLSYNHFEGEVPTKG-VFSNKTKISLQGNMKLC 453 (833)
Q Consensus 378 --N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~-~~~~~~~l~l~~N~~~c 453 (833)
|++.+..|..+..+++|+.|+|++|++ +.+|..+. ++|+.|||++|++....+... .........+.+|++.|
T Consensus 790 s~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i~~~~~~~~~~~~~~~L~~n~~~~ 865 (876)
T 4ecn_A 790 EGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQD 865 (876)
T ss_dssp TCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEEECGGGHHHHHTTCCEEECCTTSE
T ss_pred ccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCccChHHccccccchheeecCCCccc
Confidence 888889999999999999999999999 57777765 699999999999987654321 12233445566666543
No 28
>3hmm_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A*
Probab=100.00 E-value=2.6e-48 Score=408.29 Aligned_cols=272 Identities=24% Similarity=0.288 Sum_probs=202.3
Q ss_pred cCCccCceeccCcceEEEEEEECCCceEEEEEEeeccCCcchhHHHHHHHHHhhcCCCccceEeeEeecCCCCCCceEeE
Q 040925 531 GEFSSSNMIGQGSFGYVYKGTLGEDEMIVAVKVINLKYKGASRSFVAECEALRNIRHRNLIKIITICSSTDFKGTDFKAF 610 (833)
Q Consensus 531 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~~l 610 (833)
.+|.+.+.||+|+||+||+|++ +|+.||||+++.... .......|+..+.+++|||||+++|+|...+ ......|+
T Consensus 3 r~i~L~~~iG~G~fG~Vy~~~~--~g~~VAvK~l~~~~~-~~~~~e~Ei~~~~~l~HpNIv~l~g~~~~~~-~~~~~~~l 78 (303)
T 3hmm_A 3 RTIVLQESIGKGRFGEVWRGKW--RGEEVAVKIFSSREE-RSWFREAEIYQTVMLRHENILGFIAADNKDN-GTWTQLWL 78 (303)
T ss_dssp GGEEEEEEEEECSSSEEEEEEE--TTEEEEEEEECGGGH-HHHHHHHHHHTSTTCCCTTBCCEEEEEEEEC-SSSEEEEE
T ss_pred cEEEEEEEEeeCCCeEEEEEEE--CCEEEEEEEECccch-hhHHHHHHHHHHhcCCCCCCCcEEEEEEecC-CCceEEEE
Confidence 4688889999999999999998 588999999964321 1222345666667889999999999987653 12236899
Q ss_pred EEEecCCCChhhhhccCCCccccccCCHHHHHHHHHHHHHHHHHHhhc-----CCCCceeeCCCCCCeeecCCCcEEEcc
Q 040925 611 VFEYMENGSLKDWLHQSDDQVEVCKLSLIQRVNIAIDVASAMEYLHHH-----CQPPMVHGDLKPSNVLLDHDMVAHVCD 685 (833)
Q Consensus 611 v~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~gL~~LH~~-----~~~~ivH~Dlkp~NIll~~~~~~kL~D 685 (833)
|||||++|+|.++++.. .+++..+.+++.|++.||+|||++ ..++||||||||+|||++.++.+||+|
T Consensus 79 V~Ey~~~gsL~~~l~~~-------~l~~~~~~~i~~~ia~gl~ylH~~~~~~~~~~~IiHRDlKp~NILl~~~~~~Ki~D 151 (303)
T 3hmm_A 79 VSDYHEHGSLFDYLNRY-------TVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIAD 151 (303)
T ss_dssp EEECCTTCBHHHHHHHC-------CBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBCCEECSCCCGGGEEECTTSCEEECC
T ss_pred EecCCCCCcHHHHHHhC-------CCCHHHHHHHHHHHHHHHHHHHHhhhhccCCCCEeeccCCcccEEECCCCCEEEEe
Confidence 99999999999999764 589999999999999999999976 245899999999999999999999999
Q ss_pred cccccccCcccccccccCCCccccccccccccCccccCCC------CCCcccccccCCcCCCccccCCccHHHHHHHhCC
Q 040925 686 FGLAKFLSDHQLDTAVKTPSSSIGLKGTVGYVAPEYGMGS------EASMTGDIFTGRRPIDAVFNEGHSLHEFAKTALP 759 (833)
Q Consensus 686 fG~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~------~~~~~~Di~s~~~~~~~~~~~g~~l~~~~~~~~p 759 (833)
||+|+......... .......+||+.|||||++.+. .++.++|||| +|+++||++++..|
T Consensus 152 FGla~~~~~~~~~~----~~~~~~~~GT~~ymAPE~l~~~~~~~~~~~~~k~DVwS----------~Gvvl~El~tg~~~ 217 (303)
T 3hmm_A 152 LGLAVRHDSATDTI----DIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYA----------MGLVFWEIARRCSI 217 (303)
T ss_dssp CTTCEEEETTTTEE----SCC-----CCGGGCCHHHHTTCSCTTCHHHHHHHHHHH----------HHHHHHHHHHTBCB
T ss_pred CCCCccccCCCCce----eeecccccccccccCHHHhcccccccCCccChhHhhhh----------HHHHHHHHHHCCCC
Confidence 99998764432111 1122345799999999998764 4788999999 88899999998766
Q ss_pred Cccccccc----------cc---chhhhccccchhhhhhhhchHHHHHHHHHHhhccCCCCCCCCCCHHHHHHHHHHhhh
Q 040925 760 EKVMEIVD----------PS---LLMEVMTNNSMIQEDKRVKTEECLNAIIRTGVLCSMESPFERMDMRDVVAKLCHTRE 826 (833)
Q Consensus 760 ~~~~~~~~----------~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~i~~ 826 (833)
+....... +. .....................++++.+.+++.+||+.||++||||.||++.|+++.+
T Consensus 218 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~rp~~p~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~ei~~~L~~l~~ 297 (303)
T 3hmm_A 218 GGIHEDYQLPYYDLVPSDPSVEEMRKVVCEQKLRPNIPNRWQSCEALRVMAKIMRECWYANGAARLTALRIKKTLSQLSQ 297 (303)
T ss_dssp TTBCCCCCCTTTTTSCSSCCHHHHHHHHTTSCCCCCCCGGGGSSHHHHHHHHHHHTTCCSSGGGSCCHHHHHHHHHHHHH
T ss_pred CCccccccccchhcccccchHHHHHHHHhcccCCCCCCccccchHHHHHHHHHHHHHcccCHhHCcCHHHHHHHHHHHHH
Confidence 43211100 00 000011111111111223344577889999999999999999999999999999876
Q ss_pred h
Q 040925 827 T 827 (833)
Q Consensus 827 ~ 827 (833)
.
T Consensus 298 ~ 298 (303)
T 3hmm_A 298 Q 298 (303)
T ss_dssp C
T ss_pred H
Confidence 4
No 29
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=6.4e-47 Score=436.82 Aligned_cols=419 Identities=20% Similarity=0.215 Sum_probs=357.1
Q ss_pred CcEEEcCCCcCcccCCccccCCCCCCEEEccCCcccccCCccCCCCCCCCEEEcCCCccccc-CCccccCCCCCcEEECC
Q 040925 1 LQTLAVNDNYLTGQLPDFVGNLSDLEVIRIMGNSLGGKIPTTLGLLRNLVSLNVAENKFSGM-FPRSICNISSLELIQLA 79 (833)
Q Consensus 1 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~-~~~~~~~l~~L~~L~L~ 79 (833)
|++|++++|++++..|++|.++++|++|++++|++++..|..|+.+++|++|+|++|++++. .|..|.++++|++|+++
T Consensus 52 L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~ 131 (549)
T 2z81_A 52 LQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIG 131 (549)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEE
T ss_pred ccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECC
Confidence 78999999999998889999999999999999999888888899999999999999999864 57889999999999999
Q ss_pred CcccccccCchhhcCCCCccEEEccCCcceeeCCccccCCCCCcEEEcccCccccccCcCccCCCcCceEecccccCCCC
Q 040925 80 LNRFSGNLPFDIVVNLPNLKALAIGGNNFFGSIPYSLSNASNLELLDLSVNQFKGNVSIDFSSLKNLLWLNLEQNNLGTG 159 (833)
Q Consensus 80 ~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~ 159 (833)
+|.+.+.+|...|.++++|++|+|++|.+++..|..|..+++|++|++++|.+..++...+..+++|++|+|++|+++..
T Consensus 132 ~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 211 (549)
T 2z81_A 132 NVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARF 211 (549)
T ss_dssp ESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTC
T ss_pred CCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccc
Confidence 99955588888899999999999999999999999999999999999999999877766677899999999999999876
Q ss_pred CCCCcccccccCCCCCCCEEEccCCcCcccCChhHhhh---cccccEEEccCccccccC---------------------
Q 040925 160 TATDLDFVTFLTNCSSLKALSLADNQFGGELPHSIANL---SSTVINFGIGRNQISGTI--------------------- 215 (833)
Q Consensus 160 ~~~~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l---~~~l~~L~l~~n~i~~~~--------------------- 215 (833)
+.... .....+++|+.|++++|++++..+..+... ...++.+++++|.+.+..
T Consensus 212 ~~~~~---~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l 288 (549)
T 2z81_A 212 QFSPL---PVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTI 288 (549)
T ss_dssp CCCCC---SSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEE
T ss_pred ccccc---chhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccc
Confidence 43221 224567889999999999887666655433 234667777777765421
Q ss_pred --------------ChhhhcCCCCCeEeccCCcccccCCcc-ccCCCCCCEEEcccccCcccCC---ccccCCCCCCeEE
Q 040925 216 --------------PPGIRNLVNLIGFGAEENQLHGTIPDA-IGELKNLQKLCLFRNFLQGRIP---SGLGNLTKLANLE 277 (833)
Q Consensus 216 --------------~~~~~~l~~L~~L~L~~N~l~~~~~~~-~~~l~~L~~L~L~~N~l~~~~~---~~~~~l~~L~~L~ 277 (833)
+..+..+.+|+.|++++|++.. +|.. +..+++|++|+|++|.+++..| ..+..+++|++|+
T Consensus 289 ~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~-ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~ 367 (549)
T 2z81_A 289 RRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFL-VPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLV 367 (549)
T ss_dssp ESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCC-CCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEE
T ss_pred cccccchhhhcccchhhhhhcccceEEEeccCcccc-CCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEE
Confidence 1123445689999999999984 5554 4689999999999999997664 3478899999999
Q ss_pred eecccccCCCC--CCCCCCCccceeecCCceecccCCcccccccccceeeecCCCccCCCCCcccccCCCcCEEeccCCc
Q 040925 278 LSSNSLQGNIP--SSLGNCQNLMSFTASQNKLTGALPHQLLSITTLSLYLDLSNNLLNGSLPLQVGHLKNLVILDISSNQ 355 (833)
Q Consensus 278 L~~N~l~~~~~--~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~ll~~L~ls~N~l~~~~~~~~~~l~~L~~L~ls~N~ 355 (833)
|++|++++..+ ..+..+++|++|++++|+++ .+|..+..+..+ ++|++++|.++. +|..+ .++|++|++++|+
T Consensus 368 Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L-~~L~Ls~N~l~~-l~~~~--~~~L~~L~Ls~N~ 442 (549)
T 2z81_A 368 LSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKM-RFLNLSSTGIRV-VKTCI--PQTLEVLDVSNNN 442 (549)
T ss_dssp CTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTC-CEEECTTSCCSC-CCTTS--CTTCSEEECCSSC
T ss_pred ccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccc-cEEECCCCCccc-ccchh--cCCceEEECCCCC
Confidence 99999986543 56889999999999999999 789888877777 899999999984 44443 3689999999999
Q ss_pred CCCCCCccccCCCCCcEEeecCCccccccCccccCCCCCCeEEccCcccCCCchhhhcCCCCCceEECccCcCccccCC
Q 040925 356 FSGVIPGTLSTCVCLEYLDISSNSFHGVIPLSLSFLKSIKELNVSSNNLSGQIPEFLKNLSVLEFLSLSYNHFEGEVPT 434 (833)
Q Consensus 356 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~ 434 (833)
+++.+ ..+++|++|+|++|+|+. +|. ...+++|+.|+|++|++++.+|..+..+++|+.|++++|+|+|.+|.
T Consensus 443 l~~~~----~~l~~L~~L~Ls~N~l~~-ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 515 (549)
T 2z81_A 443 LDSFS----LFLPRLQELYISRNKLKT-LPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 515 (549)
T ss_dssp CSCCC----CCCTTCCEEECCSSCCSS-CCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHHH
T ss_pred hhhhc----ccCChhcEEECCCCccCc-CCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCcc
Confidence 98653 578999999999999995 454 46799999999999999999999999999999999999999999984
No 30
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=6e-47 Score=447.95 Aligned_cols=417 Identities=18% Similarity=0.202 Sum_probs=348.4
Q ss_pred CCCCEEEccCCcccccCCccCCCCCCCCEEEc-CCCcccccCCccc----------------------------------
Q 040925 23 SDLEVIRIMGNSLGGKIPTTLGLLRNLVSLNV-AENKFSGMFPRSI---------------------------------- 67 (833)
Q Consensus 23 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L-~~n~i~~~~~~~~---------------------------------- 67 (833)
..++.|+|++|.+.+.+|+.|+.|++|++|+| ++|.+++..|-.-
T Consensus 323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~ 402 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD 402 (876)
T ss_dssp SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence 57999999999999999999999999999999 9998876532110
Q ss_pred -----------------cCCCCCcEEECCC--cccccccCchhhcCCCCccEEEccCCccee-----------------e
Q 040925 68 -----------------CNISSLELIQLAL--NRFSGNLPFDIVVNLPNLKALAIGGNNFFG-----------------S 111 (833)
Q Consensus 68 -----------------~~l~~L~~L~L~~--N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~-----------------~ 111 (833)
.....++.+.+.. |++++ +|.. |.++++|++|+|++|.|++ .
T Consensus 403 l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~-l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~ 480 (876)
T 4ecn_A 403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKA-IQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQY 480 (876)
T ss_dssp HHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGG-GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHH
T ss_pred HHHHHhhhCccccccccccccchhhceeccccCcccc-hhHH-HhcCCCCCEEECcCCcCCCCccccccccccccccccc
Confidence 1222344444444 88985 8864 6899999999999999997 3
Q ss_pred CCcccc--CCCCCcEEEcccCccccccCcCccCCCcCceEeccccc-CCC--CCCCCcccc-cccCCCCCCCEEEccCCc
Q 040925 112 IPYSLS--NASNLELLDLSVNQFKGNVSIDFSSLKNLLWLNLEQNN-LGT--GTATDLDFV-TFLTNCSSLKALSLADNQ 185 (833)
Q Consensus 112 ~~~~~~--~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~-l~~--~~~~~~~~~-~~l~~l~~L~~L~Ls~N~ 185 (833)
+|..++ ++++|++|+|++|++.+..|..|.++++|++|+|++|+ ++. ++.. +... ..+..+++|++|+|++|+
T Consensus 481 iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~-i~~L~~~~~~l~~L~~L~Ls~N~ 559 (876)
T 4ecn_A 481 ENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKAD-WTRLADDEDTGPKIQIFYMGYNN 559 (876)
T ss_dssp TTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHH-HHHHHHCTTTTTTCCEEECCSSC
T ss_pred CChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHH-HHhhhhcccccCCccEEEeeCCc
Confidence 888877 99999999999999998999999999999999999998 753 2221 1111 135567799999999999
Q ss_pred CcccCCh--hHhhhcccccEEEccCccccccCChhhhcCCCCCeEeccCCcccccCCccccCCCC-CCEEEcccccCccc
Q 040925 186 FGGELPH--SIANLSSTVINFGIGRNQISGTIPPGIRNLVNLIGFGAEENQLHGTIPDAIGELKN-LQKLCLFRNFLQGR 262 (833)
Q Consensus 186 l~~~~p~--~~~~l~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~-L~~L~L~~N~l~~~ 262 (833)
++ .+|. .+.++. .++.|++++|+++ .+| .|..+++|+.|+|++|++. .+|..|..+++ |++|+|++|.|+ .
T Consensus 560 L~-~ip~~~~l~~L~-~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~ 633 (876)
T 4ecn_A 560 LE-EFPASASLQKMV-KLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-Y 633 (876)
T ss_dssp CC-BCCCHHHHTTCT-TCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-S
T ss_pred CC-ccCChhhhhcCC-CCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-c
Confidence 99 8998 888876 4899999999999 777 9999999999999999999 78888999999 999999999999 6
Q ss_pred CCccccCCCC--CCeEEeecccccCCCCCCC---C--CCCccceeecCCceecccCCcccc-cccccceeeecCCCccCC
Q 040925 263 IPSGLGNLTK--LANLELSSNSLQGNIPSSL---G--NCQNLMSFTASQNKLTGALPHQLL-SITTLSLYLDLSNNLLNG 334 (833)
Q Consensus 263 ~~~~~~~l~~--L~~L~L~~N~l~~~~~~~~---~--~l~~L~~L~l~~N~l~~~~p~~~~-~~~~ll~~L~ls~N~l~~ 334 (833)
+|..+..++. |+.|+|++|++.+.+|... . .+++|+.|++++|+++ .+|..++ .+..+ +.|+|++|.++.
T Consensus 634 lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L-~~L~Ls~N~L~~ 711 (876)
T 4ecn_A 634 IPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPI-STIILSNNLMTS 711 (876)
T ss_dssp CCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCC-SEEECCSCCCSC
T ss_pred CchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCC-CEEECCCCcCCc
Confidence 8888887755 9999999999998766433 2 3458999999999999 7888877 45555 899999999994
Q ss_pred CCCcccccC-------CCcCEEeccCCcCCCCCCcccc--CCCCCcEEeecCCccccccCccccCCCCCCeEEccC----
Q 040925 335 SLPLQVGHL-------KNLVILDISSNQFSGVIPGTLS--TCVCLEYLDISSNSFHGVIPLSLSFLKSIKELNVSS---- 401 (833)
Q Consensus 335 ~~~~~~~~l-------~~L~~L~ls~N~l~~~~~~~~~--~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~---- 401 (833)
+.+..+... ++|+.|+|++|+|+ .+|..+. .+++|+.|+|++|+|++ +|..+..+++|+.|+|++
T Consensus 712 ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~l 789 (876)
T 4ecn_A 712 IPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDA 789 (876)
T ss_dssp CCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCT
T ss_pred cChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCc
Confidence 433334332 39999999999999 6677776 99999999999999997 688899999999999976
Q ss_pred --cccCCCchhhhcCCCCCceEECccCcCccccCCCCccCCCccccccCCcCCCC
Q 040925 402 --NNLSGQIPEFLKNLSVLEFLSLSYNHFEGEVPTKGVFSNKTKISLQGNMKLCG 454 (833)
Q Consensus 402 --N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~l~l~~N~~~c~ 454 (833)
|++.+.+|..+.++++|+.|+|++|++.. +|.. ..++++.+++++|++..-
T Consensus 790 s~N~l~~~ip~~l~~L~~L~~L~Ls~N~L~~-Ip~~-l~~~L~~LdLs~N~l~~i 842 (876)
T 4ecn_A 790 EGNRILRQWPTGITTCPSLIQLQIGSNDIRK-VDEK-LTPQLYILDIADNPNISI 842 (876)
T ss_dssp TCCBCCCCCCTTGGGCSSCCEEECCSSCCCB-CCSC-CCSSSCEEECCSCTTCEE
T ss_pred ccccccccChHHHhcCCCCCEEECCCCCCCc-cCHh-hcCCCCEEECCCCCCCcc
Confidence 88899999999999999999999999954 4443 246899999999987543
No 31
>4ase_A Vascular endothelial growth factor receptor 2; transferase, angiogenesis, signaling protein, phosphorylatio receptor, inhibitor; HET: AV9; 1.83A {Homo sapiens} PDB: 4agd_A* 4asd_A* 4agc_A*
Probab=100.00 E-value=2.2e-48 Score=414.49 Aligned_cols=277 Identities=21% Similarity=0.302 Sum_probs=214.9
Q ss_pred cchHHHHHHhcCCccCceeccCcceEEEEEEECCC-----ceEEEEEEeeccCC-cchhHHHHHHHHHhhcCC-CccceE
Q 040925 521 VSYAELSKATGEFSSSNMIGQGSFGYVYKGTLGED-----EMIVAVKVINLKYK-GASRSFVAECEALRNIRH-RNLIKI 593 (833)
Q Consensus 521 ~~~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~-----~~~vavK~~~~~~~-~~~~~~~~E~~~l~~l~h-~niv~~ 593 (833)
++.++++...++|++.+.||+|+||+||+|++... ++.||||+++.... ...+.+.+|+++|++++| ||||++
T Consensus 54 ~~~~~wEi~~~~~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~k~VAvK~l~~~~~~~~~~~~~~E~~il~~l~hhpnIV~l 133 (353)
T 4ase_A 54 YDASKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNL 133 (353)
T ss_dssp CCHHHHBCCGGGEEEEEEEEECSSEEEEEEEEETSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCE
T ss_pred CCCcccEecHHHeEEeeEEecCCCeEEEEEEEcCCCcccCCeEEEEEEEccccChHHHHHHHHHHHHHHHcCCCCcEEEE
Confidence 34455666678999999999999999999998643 47899999975433 234679999999999975 999999
Q ss_pred eeEeecCCCCCCceEeEEEEecCCCChhhhhccCCCc----------cccccCCHHHHHHHHHHHHHHHHHHhhcCCCCc
Q 040925 594 ITICSSTDFKGTDFKAFVFEYMENGSLKDWLHQSDDQ----------VEVCKLSLIQRVNIAIDVASAMEYLHHHCQPPM 663 (833)
Q Consensus 594 ~~~~~~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~----------~~~~~l~~~~~~~i~~qi~~gL~~LH~~~~~~i 663 (833)
+|+|...+ ...++|||||++|+|.++++..... .....+++.++..|+.|||.||+|||++ +|
T Consensus 134 ~g~~~~~~----~~~~iV~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qia~gl~yLH~~---~i 206 (353)
T 4ase_A 134 LGACTKPG----GPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLASR---KC 206 (353)
T ss_dssp EEEECCTT----SCCEEEEECCTTEEHHHHHHHTGGGBCCC-------CTTCBCHHHHHHHHHHHHHHHHHHHHT---TC
T ss_pred EEEEEecC----CEEEEEEEcCCCCCHHHHHHhcccccccccccchhhccccCCHHHHHHHHHHHHHHHHhHhhC---Ce
Confidence 99985432 3689999999999999999764321 0122589999999999999999999999 99
Q ss_pred eeeCCCCCCeeecCCCcEEEcccccccccCcccccccccCCCccccccccccccCccccCCCCCCcccccccCCcCCCcc
Q 040925 664 VHGDLKPSNVLLDHDMVAHVCDFGLAKFLSDHQLDTAVKTPSSSIGLKGTVGYVAPEYGMGSEASMTGDIFTGRRPIDAV 743 (833)
Q Consensus 664 vH~Dlkp~NIll~~~~~~kL~DfG~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~s~~~~~~~~ 743 (833)
|||||||+|||+++++.+||+|||+|+.+...... .......||+.|||||++.+..|+.++||||
T Consensus 207 iHRDLK~~NILl~~~~~vKi~DFGlar~~~~~~~~------~~~~~~~gt~~ymAPE~l~~~~y~~ksDVwS-------- 272 (353)
T 4ase_A 207 IHRDLAARNILLSEKNVVKICDFGLARDIYKDPDY------VRKGDARLPLKWMAPETIFDRVYTIQSDVWS-------- 272 (353)
T ss_dssp CCSCCSGGGEEECGGGCEEECCCGGGSCTTTCTTS------EEETTEEECGGGCCHHHHHHCCCCHHHHHHH--------
T ss_pred ecCccCccceeeCCCCCEEECcchhhhhcccCCCc------eeeccccccccccCHHHHhcCCCCCcccEee--------
Confidence 99999999999999999999999999876443211 1122357999999999999999999999999
Q ss_pred ccCCccHHHHHH-HhCCCcccccccccchhhhccccchhhhhhhhchHHHHHHHHHHhhccCCCCCCCCCCHHHHHHHHH
Q 040925 744 FNEGHSLHEFAK-TALPEKVMEIVDPSLLMEVMTNNSMIQEDKRVKTEECLNAIIRTGVLCSMESPFERMDMRDVVAKLC 822 (833)
Q Consensus 744 ~~~g~~l~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~ 822 (833)
+|+++||+++ +..|+..... +..+........ ....++.+++++.+++.+||+.||++|||+.||+++|+
T Consensus 273 --~Gv~l~El~t~G~~Pf~~~~~-~~~~~~~i~~g~------~~~~p~~~~~~~~~li~~c~~~dP~~RPt~~eil~~L~ 343 (353)
T 4ase_A 273 --FGVLLWEIFSLGASPYPGVKI-DEEFCRRLKEGT------RMRAPDYTTPEMYQTMLDCWHGEPSQRPTFSELVEHLG 343 (353)
T ss_dssp --HHHHHHHHTTTSCCSSTTCCC-SHHHHHHHHHTC------CCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHH
T ss_pred --hHHHHHHHHhCCCCCCCCCCH-HHHHHHHHHcCC------CCCCCccCCHHHHHHHHHHcCcChhHCcCHHHHHHHHH
Confidence 7777788776 6777642211 111111111110 11123345678899999999999999999999999999
Q ss_pred Hhhhh
Q 040925 823 HTRET 827 (833)
Q Consensus 823 ~i~~~ 827 (833)
.+.++
T Consensus 344 ~llq~ 348 (353)
T 4ase_A 344 NLLQA 348 (353)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98764
No 32
>3ubd_A Ribosomal protein S6 kinase alpha-3; kinase-inhibitor complex, induced FIT, transferase-transfera inhibitor complex; HET: SL0; 1.53A {Mus musculus} PDB: 4el9_A* 3g51_A* 2z7q_A* 2z7r_A* 2z7s_A*
Probab=100.00 E-value=2e-48 Score=404.24 Aligned_cols=248 Identities=21% Similarity=0.266 Sum_probs=196.0
Q ss_pred cCCccCceeccCcceEEEEEEEC---CCceEEEEEEeeccC--CcchhHHHHHHHHHhhcCCCccceEeeEeecCCCCCC
Q 040925 531 GEFSSSNMIGQGSFGYVYKGTLG---EDEMIVAVKVINLKY--KGASRSFVAECEALRNIRHRNLIKIITICSSTDFKGT 605 (833)
Q Consensus 531 ~~y~~~~~lg~G~~g~Vy~~~~~---~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~ 605 (833)
++|++.+.||+|+||+||+|++. .+++.||||+++... ......+.+|++++++++|||||++++++.+.+
T Consensus 24 ~~Y~i~~~lG~G~fg~Vy~a~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~---- 99 (304)
T 3ubd_A 24 SQFELLKVLGQGSFGKVFLVKKISGSDARQLYAMKVLKKATLKVRDRVRTKMERDILVEVNHPFIVKLHYAFQTEG---- 99 (304)
T ss_dssp GGEEEEEEEECGGGCEEEEEEECSSTTTTCEEEEEEEESEEEEEEECC------CCCCCCCCTTEECEEEEEEETT----
T ss_pred cccEEEEEEecCCCeEEEEEEEccCCCCCEEEEEEEEehHHcChHHHHHHHHHHHHHHHCCCCCCCeEEEEEEECC----
Confidence 57999999999999999999873 468899999997432 223456889999999999999999999976655
Q ss_pred ceEeEEEEecCCCChhhhhccCCCccccccCCHHHHHHHHHHHHHHHHHHhhcCCCCceeeCCCCCCeeecCCCcEEEcc
Q 040925 606 DFKAFVFEYMENGSLKDWLHQSDDQVEVCKLSLIQRVNIAIDVASAMEYLHHHCQPPMVHGDLKPSNVLLDHDMVAHVCD 685 (833)
Q Consensus 606 ~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~gL~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kL~D 685 (833)
..|+|||||+||+|.+++.+.+ .+++.+++.++.||+.||+|||++ +||||||||+|||++.+|.+||+|
T Consensus 100 -~~~ivmEy~~gg~L~~~l~~~~------~l~e~~~~~~~~qi~~aL~ylH~~---~IiHRDlKp~NILl~~~g~vKl~D 169 (304)
T 3ubd_A 100 -KLYLILDFLRGGDLFTRLSKEV------MFTEEDVKFYLAELALALDHLHSL---GIIYRDLKPENILLDEEGHIKLTD 169 (304)
T ss_dssp -EEEEEECCCTTCEEHHHHHHHC------CCCHHHHHHHHHHHHHHHHHHHHT---TCCCSSCCGGGEEECTTSCEEEES
T ss_pred -EEEEEEEcCCCCCHHHHHHhcC------CCCHHHHHHHHHHHHHHHHHHHHC---CCcCCCCCHHHeEEcCCCCEEecc
Confidence 8999999999999999998754 799999999999999999999999 999999999999999999999999
Q ss_pred cccccccCcccccccccCCCccccccccccccCccccCCCCCCcccccccCCcCCCccccCCccHHHHHHHhCCCccccc
Q 040925 686 FGLAKFLSDHQLDTAVKTPSSSIGLKGTVGYVAPEYGMGSEASMTGDIFTGRRPIDAVFNEGHSLHEFAKTALPEKVMEI 765 (833)
Q Consensus 686 fG~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~s~~~~~~~~~~~g~~l~~~~~~~~p~~~~~~ 765 (833)
||+|+...... ......+||+.|||||++.+..|+.++|||| .|+++|+++++..|+.....
T Consensus 170 FGla~~~~~~~--------~~~~~~~GT~~YmAPE~~~~~~y~~~~DiwS----------lGvilyemltG~~PF~~~~~ 231 (304)
T 3ubd_A 170 FGLSKESIDHE--------KKAYSFCGTVEYMAPEVVNRRGHTQSADWWS----------FGVLMFEMLTGTLPFQGKDR 231 (304)
T ss_dssp SEEEEC-------------CCCCSCCCCGGGCCHHHHHTSCCCTHHHHHH----------HHHHHHHHHHSSCSSCCSSH
T ss_pred cccceeccCCC--------ccccccccCcccCCHHHhccCCCCCCCcccc----------hHHHHHHHHhCCCCCCCcCH
Confidence 99998654322 1223467999999999999999999999999 89999999999999863221
Q ss_pred ccccchhhhccccchhhhhhhhchHHHHHHHHHHhhccCCCCCCCCCCH-----HHHHH
Q 040925 766 VDPSLLMEVMTNNSMIQEDKRVKTEECLNAIIRTGVLCSMESPFERMDM-----RDVVA 819 (833)
Q Consensus 766 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~-----~eil~ 819 (833)
. ........... ..+..+++.+.+++.+||+.||++|||+ +|+++
T Consensus 232 ~--~~~~~i~~~~~-------~~p~~~s~~~~~li~~~L~~dP~~R~ta~~~~~~eil~ 281 (304)
T 3ubd_A 232 K--ETMTMILKAKL-------GMPQFLSPEAQSLLRMLFKRNPANRLGAGPDGVEEIKR 281 (304)
T ss_dssp H--HHHHHHHHCCC-------CCCTTSCHHHHHHHHHHTCSSGGGSTTCSTTTHHHHHT
T ss_pred H--HHHHHHHcCCC-------CCCCcCCHHHHHHHHHHcccCHHHCCCCCcCCHHHHHc
Confidence 1 11111111111 1123356678999999999999999984 56664
No 33
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=1.5e-45 Score=433.74 Aligned_cols=445 Identities=20% Similarity=0.183 Sum_probs=293.5
Q ss_pred CcEEEcCCCcCcccCCccccCCCCCCEEEccCCcccccCCccCCCCCCCCEEEcCCCcccccCCccccCCCCCcEEECCC
Q 040925 1 LQTLAVNDNYLTGQLPDFVGNLSDLEVIRIMGNSLGGKIPTTLGLLRNLVSLNVAENKFSGMFPRSICNISSLELIQLAL 80 (833)
Q Consensus 1 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~ 80 (833)
+++|||++|+|+++.|.+|.++++|++|+|++|+|+++.|++|..+++|++|+|++|+|+++.+.+|.++++|++|+|++
T Consensus 54 ~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~ 133 (635)
T 4g8a_A 54 TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVE 133 (635)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTT
T ss_pred CCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCC
Confidence 35666666666655555666666666666666666666666666666666666666666655556666666666666666
Q ss_pred cccccccCchhhcCCCCccEEEccCCcceee-CCccccCCCCCcEEEcccCccccccCcCccCCCcCc----eEeccccc
Q 040925 81 NRFSGNLPFDIVVNLPNLKALAIGGNNFFGS-IPYSLSNASNLELLDLSVNQFKGNVSIDFSSLKNLL----WLNLEQNN 155 (833)
Q Consensus 81 N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~----~L~L~~N~ 155 (833)
|+++ .+|...|.++++|++|+|++|.++.. .|..++.+++|++|+|++|+|+++.+..|..+.+++ .++++.|.
T Consensus 134 N~l~-~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~ 212 (635)
T 4g8a_A 134 TNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP 212 (635)
T ss_dssp SCCC-CSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCC
T ss_pred CcCC-CCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCc
Confidence 6665 55655666666666666666666542 355566666666666666666666666655554433 45556665
Q ss_pred CCCCCCCCcccccccCCCCCCCEEEccCCcCcccCCh-hHhh--------------------------------------
Q 040925 156 LGTGTATDLDFVTFLTNCSSLKALSLADNQFGGELPH-SIAN-------------------------------------- 196 (833)
Q Consensus 156 l~~~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~-~~~~-------------------------------------- 196 (833)
++.++...+ ....++.|++++|.....++. .+..
T Consensus 213 l~~i~~~~~-------~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~ 285 (635)
T 4g8a_A 213 MNFIQPGAF-------KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEE 285 (635)
T ss_dssp CCEECTTTT-------TTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEE
T ss_pred ccccCcccc-------cchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhh
Confidence 554433211 111222333333322110000 0000
Q ss_pred ------------------hcccccEEEccCccccccCChhhhcCCCCCeEeccCCcccccCCc-----------------
Q 040925 197 ------------------LSSTVINFGIGRNQISGTIPPGIRNLVNLIGFGAEENQLHGTIPD----------------- 241 (833)
Q Consensus 197 ------------------l~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~----------------- 241 (833)
....+..+.+.+|.+... ..+....+|+.|++.+|.+....+.
T Consensus 286 l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~ 363 (635)
T 4g8a_A 286 FRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERV--KDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGN 363 (635)
T ss_dssp EEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEEC--GGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCC
T ss_pred hhhhhhcccccchhhhhhhhcccccccccccccccc--cccccchhhhhhhcccccccCcCcccchhhhhcccccccCCC
Confidence 001122222333322211 1233334455555555544332221
Q ss_pred --cccCCCCCCEEEcccccCcc--cCCccccCCCCCCeEEeecccccCCCCCCCCCCCccceeecCCceecccCCccccc
Q 040925 242 --AIGELKNLQKLCLFRNFLQG--RIPSGLGNLTKLANLELSSNSLQGNIPSSLGNCQNLMSFTASQNKLTGALPHQLLS 317 (833)
Q Consensus 242 --~~~~l~~L~~L~L~~N~l~~--~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~ 317 (833)
.+..+++|+.|++++|.+.. ..+..+..+.+|+.|+++.|.+. ..+..+..+++|+.+++++|......+...+.
T Consensus 364 ~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~-~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~ 442 (635)
T 4g8a_A 364 AFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFL 442 (635)
T ss_dssp BCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEE-EECSCCTTCTTCCEEECTTSEEESTTSSCTTT
T ss_pred Ccccccccccccchhhccccccccccccchhhhhhhhhhhccccccc-cccccccccccccchhhhhccccccccccccc
Confidence 22346677777777777653 24445566777777777777776 34566888999999999998887665554443
Q ss_pred ccccceeeecCCCccCCCCCcccccCCCcCEEeccCCcC-CCCCCccccCCCCCcEEeecCCccccccCccccCCCCCCe
Q 040925 318 ITTLSLYLDLSNNLLNGSLPLQVGHLKNLVILDISSNQF-SGVIPGTLSTCVCLEYLDISSNSFHGVIPLSLSFLKSIKE 396 (833)
Q Consensus 318 ~~~ll~~L~ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l-~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 396 (833)
....+..+++++|.+.+..+..+..++.|+.|++++|.+ .+..|..|..+++|++|+|++|+|+++.|..|.++++|++
T Consensus 443 ~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~ 522 (635)
T 4g8a_A 443 SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQV 522 (635)
T ss_dssp TCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred cccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCE
Confidence 333347899999999988899999999999999999975 4567889999999999999999999999999999999999
Q ss_pred EEccCcccCCCchhhhcCCCCCceEECccCcCccccCCC-Ccc-CCCccccccCCcCCCCCc
Q 040925 397 LNVSSNNLSGQIPEFLKNLSVLEFLSLSYNHFEGEVPTK-GVF-SNKTKISLQGNMKLCGGI 456 (833)
Q Consensus 397 L~l~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~-~~~-~~~~~l~l~~N~~~c~~~ 456 (833)
|+|++|+|++..|..|..+++|+.|||++|++++.+|.. ..+ .+++.+++++|||.|.+.
T Consensus 523 L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~ 584 (635)
T 4g8a_A 523 LNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE 584 (635)
T ss_dssp EECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGG
T ss_pred EECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCC
Confidence 999999999999999999999999999999999988865 334 678999999999999654
No 34
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=9.7e-47 Score=440.04 Aligned_cols=415 Identities=17% Similarity=0.241 Sum_probs=353.7
Q ss_pred CCCCEEEccCCcccccCCccCCCCCCCCEEEcCCCcccccCCcccc----------------------------------
Q 040925 23 SDLEVIRIMGNSLGGKIPTTLGLLRNLVSLNVAENKFSGMFPRSIC---------------------------------- 68 (833)
Q Consensus 23 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~---------------------------------- 68 (833)
.+++.|+|++|.+.+.+|.+|+.+++|++|+|++|.+. ..+..++
T Consensus 81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~-~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~ 159 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEK-VNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFS 159 (636)
T ss_dssp CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGG-GTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSC
T ss_pred CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccc-cCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHH
Confidence 57999999999999999999999999999999999762 1111111
Q ss_pred -------------------CCCCCcEEECC--CcccccccCchhhcCCCCccEEEccCCcceee----------------
Q 040925 69 -------------------NISSLELIQLA--LNRFSGNLPFDIVVNLPNLKALAIGGNNFFGS---------------- 111 (833)
Q Consensus 69 -------------------~l~~L~~L~L~--~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~---------------- 111 (833)
....++.+.+. .|++++ +|.. |.++++|++|+|++|.+++.
T Consensus 160 ~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~-l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~ 237 (636)
T 4eco_A 160 DLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKA-VMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQ 237 (636)
T ss_dssp HHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGG-GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHH
T ss_pred HHHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHH-HhcccCCCEEECcCCccccccccccccccccchhcc
Confidence 11122222232 688986 8864 68999999999999999975
Q ss_pred -CCcccc--CCCCCcEEEcccCccccccCcCccCCCcCceEeccccc-CCCCCCCCcccccccCC------CCCCCEEEc
Q 040925 112 -IPYSLS--NASNLELLDLSVNQFKGNVSIDFSSLKNLLWLNLEQNN-LGTGTATDLDFVTFLTN------CSSLKALSL 181 (833)
Q Consensus 112 -~~~~~~--~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~~~~l~~------l~~L~~L~L 181 (833)
+|..++ ++++|++|+|++|++.+..|..|.++++|++|+|++|+ ++. ...|..+.+ +++|++|+|
T Consensus 238 ~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~-----~~lp~~~~~L~~~~~l~~L~~L~L 312 (636)
T 4eco_A 238 YKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISG-----EQLKDDWQALADAPVGEKIQIIYI 312 (636)
T ss_dssp HTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCH-----HHHHHHHHHHHHSGGGGTCCEEEC
T ss_pred cCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCcc-----ccchHHHHhhhccccCCCCCEEEC
Confidence 899998 99999999999999999999999999999999999998 753 012333444 499999999
Q ss_pred cCCcCcccCCh--hHhhhcccccEEEccCccccccCChhhhcCCCCCeEeccCCcccccCCccccCCCC-CCEEEccccc
Q 040925 182 ADNQFGGELPH--SIANLSSTVINFGIGRNQISGTIPPGIRNLVNLIGFGAEENQLHGTIPDAIGELKN-LQKLCLFRNF 258 (833)
Q Consensus 182 s~N~l~~~~p~--~~~~l~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~-L~~L~L~~N~ 258 (833)
++|+++ .+|. .+.++. .++.|++++|++++.+| .|..+++|+.|++++|++. .+|..|..+++ |++|+|++|.
T Consensus 313 ~~n~l~-~ip~~~~l~~l~-~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~ 388 (636)
T 4eco_A 313 GYNNLK-TFPVETSLQKMK-KLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNK 388 (636)
T ss_dssp CSSCCS-SCCCHHHHTTCT-TCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSC
T ss_pred CCCcCC-ccCchhhhccCC-CCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCc
Confidence 999999 8998 888876 48999999999998888 9999999999999999999 78888999999 9999999999
Q ss_pred CcccCCccccCCC--CCCeEEeecccccCCCCCCCC-------CCCccceeecCCceecccCCccccc-ccccceeeecC
Q 040925 259 LQGRIPSGLGNLT--KLANLELSSNSLQGNIPSSLG-------NCQNLMSFTASQNKLTGALPHQLLS-ITTLSLYLDLS 328 (833)
Q Consensus 259 l~~~~~~~~~~l~--~L~~L~L~~N~l~~~~~~~~~-------~l~~L~~L~l~~N~l~~~~p~~~~~-~~~ll~~L~ls 328 (833)
++ .+|..+..++ +|++|+|++|++.+..|..|. .+++|+.|++++|+++ .+|..++. +..+ ++|+|+
T Consensus 389 l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L-~~L~Ls 465 (636)
T 4eco_A 389 LK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS-KFPKELFSTGSPL-SSINLM 465 (636)
T ss_dssp CS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCC-SCCTHHHHTTCCC-SEEECC
T ss_pred Cc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccC-cCCHHHHccCCCC-CEEECC
Confidence 99 7888887765 899999999999999999998 8889999999999999 78887766 5555 899999
Q ss_pred CCccCCCCCcccccCC-------CcCEEeccCCcCCCCCCcccc--CCCCCcEEeecCCccccccCccccCCCCCCeEEc
Q 040925 329 NNLLNGSLPLQVGHLK-------NLVILDISSNQFSGVIPGTLS--TCVCLEYLDISSNSFHGVIPLSLSFLKSIKELNV 399 (833)
Q Consensus 329 ~N~l~~~~~~~~~~l~-------~L~~L~ls~N~l~~~~~~~~~--~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l 399 (833)
+|.++.+.+..+..+. +|++|+|++|+++ .+|..+. .+++|+.|+|++|++++ +|..+..+++|+.|+|
T Consensus 466 ~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~L 543 (636)
T 4eco_A 466 GNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGI 543 (636)
T ss_dssp SSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEEC
T ss_pred CCCCCCcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEEC
Confidence 9999944444454443 9999999999999 5677776 99999999999999997 7888999999999999
Q ss_pred ------cCcccCCCchhhhcCCCCCceEECccCcCccccCCCCccCCCccccccCCcCCCCCc
Q 040925 400 ------SSNNLSGQIPEFLKNLSVLEFLSLSYNHFEGEVPTKGVFSNKTKISLQGNMKLCGGI 456 (833)
Q Consensus 400 ------~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~l~l~~N~~~c~~~ 456 (833)
++|++.+.+|..+..+++|+.|+|++|+++..+... .+.++.+++++|++.|-..
T Consensus 544 s~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ip~~~--~~~L~~L~Ls~N~l~~~~~ 604 (636)
T 4eco_A 544 RNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKI--TPNISVLDIKDNPNISIDL 604 (636)
T ss_dssp CSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCCBCCSCC--CTTCCEEECCSCTTCEEEC
T ss_pred CCCcccccCcccccChHHHhcCCCCCEEECCCCcCCccCHhH--hCcCCEEECcCCCCccccH
Confidence 568889999999999999999999999995544433 3789999999999988553
No 35
>4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A*
Probab=100.00 E-value=2.6e-47 Score=398.23 Aligned_cols=265 Identities=23% Similarity=0.320 Sum_probs=191.2
Q ss_pred hcCCccCceeccCcceEEEEEEECCCceEEEEEEeeccCCc-chhHHHHHHHHHhhcCCCccceEeeEeecCCC------
Q 040925 530 TGEFSSSNMIGQGSFGYVYKGTLGEDEMIVAVKVINLKYKG-ASRSFVAECEALRNIRHRNLIKIITICSSTDF------ 602 (833)
Q Consensus 530 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~-~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~------ 602 (833)
.++|++.+.||+|+||+||+|+++.+++.||||+++..... ..+.+.+|+++|++++|||||++++++.+.+.
T Consensus 4 l~dy~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~~~~~~ 83 (299)
T 4g31_A 4 LTDFEPIQCLGRGGFGVVFEAKNKVDDCNYAIKRIRLPNRELAREKVMREVKALAKLEHPGIVRYFNAWLEKNTTEKLQP 83 (299)
T ss_dssp HHHEEEEEEEEECC--EEEEEEETTTCCEEEEEEEEECSSHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEEC-------
T ss_pred chhCEEeeEEecCCCeEEEEEEECCCCCEEEEEEEeccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEecCccccccc
Confidence 35699999999999999999999999999999999754432 34678999999999999999999999865431
Q ss_pred -CCCceEeEEEEecCCCChhhhhccCCCccccccCCHHHHHHHHHHHHHHHHHHhhcCCCCceeeCCCCCCeeecCCCcE
Q 040925 603 -KGTDFKAFVFEYMENGSLKDWLHQSDDQVEVCKLSLIQRVNIAIDVASAMEYLHHHCQPPMVHGDLKPSNVLLDHDMVA 681 (833)
Q Consensus 603 -~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~gL~~LH~~~~~~ivH~Dlkp~NIll~~~~~~ 681 (833)
....+.|+|||||++|+|.+++...... ...++..++.|+.||+.||+|||++ +||||||||+|||++.++.+
T Consensus 84 ~~~~~~l~ivmE~~~gg~L~~~l~~~~~~---~~~~~~~~~~i~~qi~~al~ylH~~---~IiHRDlKp~NILl~~~~~v 157 (299)
T 4g31_A 84 SSPKVYLYIQMQLCRKENLKDWMNGRCTI---EERERSVCLHIFLQIAEAVEFLHSK---GLMHRDLKPSNIFFTMDDVV 157 (299)
T ss_dssp ---CEEEEEEEECCCSCCHHHHHHTCCSG---GGSCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTCCE
T ss_pred cCCCcEEEEEEecCCCCcHHHHHHhcCCC---ChhHHHHHHHHHHHHHHHHHHHHHC---cCccccCcHHHeEECCCCcE
Confidence 1233579999999999999999876432 1356777899999999999999999 99999999999999999999
Q ss_pred EEcccccccccCcccccccc----cCCCccccccccccccCccccCCCCCCcccccccCCcCCCccccCCccHHHHHHHh
Q 040925 682 HVCDFGLAKFLSDHQLDTAV----KTPSSSIGLKGTVGYVAPEYGMGSEASMTGDIFTGRRPIDAVFNEGHSLHEFAKTA 757 (833)
Q Consensus 682 kL~DfG~a~~~~~~~~~~~~----~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~s~~~~~~~~~~~g~~l~~~~~~~ 757 (833)
||+|||+|+........... .......+.+||+.|||||++.+..|+.++|||| .|+++|++++
T Consensus 158 Kl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~YmAPE~~~~~~y~~~~DiwS----------lGvilyell~-- 225 (299)
T 4g31_A 158 KVGDFGLVTAMDQDEEEQTVLTPMPAYARHTGQVGTKLYMSPEQIHGNSYSHKVDIFS----------LGLILFELLY-- 225 (299)
T ss_dssp EECCCCCC--------------------------CCCTTSCHHHHTTCCCCTHHHHHH----------HHHHHHHHHS--
T ss_pred EEccCccceecCCCccccccccccccccccCCcccCccccCHHHHcCCCCCCHHHHHH----------HHHHHHHHcc--
Confidence 99999999877654322111 1112234568999999999999999999999999 7777788763
Q ss_pred CCCcccccccccchhhhccccchhhhhhhhchHHHHHHHHHHhhccCCCCCCCCCCHHHHHHH
Q 040925 758 LPEKVMEIVDPSLLMEVMTNNSMIQEDKRVKTEECLNAIIRTGVLCSMESPFERMDMRDVVAK 820 (833)
Q Consensus 758 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~ 820 (833)
|+..... ............. .....+..+...+++.+||+.||++|||+.|+++.
T Consensus 226 -Pf~~~~~-~~~~~~~~~~~~~------p~~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~h 280 (299)
T 4g31_A 226 -PFSTQME-RVRTLTDVRNLKF------PPLFTQKYPCEYVMVQDMLSPSPMERPEAINIIEN 280 (299)
T ss_dssp -CCSSHHH-HHHHHHHHHTTCC------CHHHHHHCHHHHHHHHHHTCSSGGGSCCHHHHHTS
T ss_pred -CCCCccH-HHHHHHHHhcCCC------CCCCcccCHHHHHHHHHHcCCChhHCcCHHHHhcC
Confidence 4331100 0000111111110 11223344567789999999999999999999873
No 36
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=2.4e-46 Score=428.69 Aligned_cols=420 Identities=20% Similarity=0.238 Sum_probs=351.4
Q ss_pred CcEEEcCCCcCcccCCccccCCCCCCEEEccCCcccccCCccCCCCCCCCEEEcCCCcccccCCccccCCCCCcEEECCC
Q 040925 1 LQTLAVNDNYLTGQLPDFVGNLSDLEVIRIMGNSLGGKIPTTLGLLRNLVSLNVAENKFSGMFPRSICNISSLELIQLAL 80 (833)
Q Consensus 1 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~ 80 (833)
|++|++++|++++..|.+|.++++|++|+|++|++++..|..|+.+++|++|+|++|+|+ .+|.. .+++|++|+|++
T Consensus 23 L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L~~ 99 (520)
T 2z7x_B 23 TTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH--PTVNLKHLDLSF 99 (520)
T ss_dssp CSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC--CCCCCSEEECCS
T ss_pred ccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc--ccCCccEEeccC
Confidence 689999999999888889999999999999999999988999999999999999999999 45655 899999999999
Q ss_pred cccccccC-chhhcCCCCccEEEccCCcceeeCCccccCCCCC--cEEEcccCcc--ccccCcCccC-------------
Q 040925 81 NRFSGNLP-FDIVVNLPNLKALAIGGNNFFGSIPYSLSNASNL--ELLDLSVNQF--KGNVSIDFSS------------- 142 (833)
Q Consensus 81 N~l~~~~~-~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L--~~L~L~~N~i--~~~~~~~~~~------------- 142 (833)
|+++ .++ +..|.++++|++|+|++|.+++ ..|..+++| ++|+|++|++ .+..+..|..
T Consensus 100 N~l~-~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n 175 (520)
T 2z7x_B 100 NAFD-ALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTN 175 (520)
T ss_dssp SCCS-SCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSS
T ss_pred Cccc-cccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeecccccccccccccccccccceEEEEeccC
Confidence 9998 433 3677899999999999999975 467888888 9999999999 5555555544
Q ss_pred -------------CCcCceEecccccCCCCCCCCcccccccCCCCCCCEEEccCCcCcccCChhHhhh--cccccEEEcc
Q 040925 143 -------------LKNLLWLNLEQNNLGTGTATDLDFVTFLTNCSSLKALSLADNQFGGELPHSIANL--SSTVINFGIG 207 (833)
Q Consensus 143 -------------l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l--~~~l~~L~l~ 207 (833)
+++|+.|++++|.-......-......+..+++|+.|++++|.+++..+..+... ...++.|+++
T Consensus 176 ~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~ 255 (520)
T 2z7x_B 176 KEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSIS 255 (520)
T ss_dssp SCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEE
T ss_pred cchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEee
Confidence 6778888888875100000000122357889999999999999986555444322 2368999999
Q ss_pred CccccccCChhh-----hcCCCCCeEeccCCcccccCCccccCC---CCCCEEEcccccCcccCCccccCCCCCCeEEee
Q 040925 208 RNQISGTIPPGI-----RNLVNLIGFGAEENQLHGTIPDAIGEL---KNLQKLCLFRNFLQGRIPSGLGNLTKLANLELS 279 (833)
Q Consensus 208 ~n~i~~~~~~~~-----~~l~~L~~L~L~~N~l~~~~~~~~~~l---~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 279 (833)
+|++++.+|..+ .++++|+.+++++|.+ ...+..+..+ .+|+.|++++|.+.... .+..+++|++|+|+
T Consensus 256 ~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~-~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~Ls 332 (520)
T 2z7x_B 256 NVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF-GFPQSYIYEIFSNMNIKNFTVSGTRMVHML--CPSKISPFLHLDFS 332 (520)
T ss_dssp EEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC-CSCTHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECC
T ss_pred cccccCccccchhhcccccCceeEeccccccce-ecchhhhhcccccCceeEEEcCCCcccccc--chhhCCcccEEEeE
Confidence 999999999988 9999999999999999 3333566555 78999999999987532 23688999999999
Q ss_pred cccccCCCCCCCCCCCccceeecCCceecc--cCCcccccccccceeeecCCCccCCCCCc-ccccCCCcCEEeccCCcC
Q 040925 280 SNSLQGNIPSSLGNCQNLMSFTASQNKLTG--ALPHQLLSITTLSLYLDLSNNLLNGSLPL-QVGHLKNLVILDISSNQF 356 (833)
Q Consensus 280 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~--~~p~~~~~~~~ll~~L~ls~N~l~~~~~~-~~~~l~~L~~L~ls~N~l 356 (833)
+|++++..|..+..+++|+.|++++|++++ .+|..+..+..+ ++|++++|.+++.+|. .|..+++|++|++++|++
T Consensus 333 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L-~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l 411 (520)
T 2z7x_B 333 NNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSL-QQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNIL 411 (520)
T ss_dssp SSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTC-CEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCC
T ss_pred CCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCC-CEEECCCCcCCcccccchhccCccCCEEECcCCCC
Confidence 999998899999999999999999999995 556777788887 8999999999984554 588999999999999999
Q ss_pred CCCCCccccCCCCCcEEeecCCccccccCccccCCCCCCeEEccCcccCCCchhhhcCCCCCceEECccCcCccccCC
Q 040925 357 SGVIPGTLSTCVCLEYLDISSNSFHGVIPLSLSFLKSIKELNVSSNNLSGQIPEFLKNLSVLEFLSLSYNHFEGEVPT 434 (833)
Q Consensus 357 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~ 434 (833)
++..|..+. ++|+.|+|++|+++ .+|..+..+++|+.|++++|++++..+..+..+++|+.|++++|+++|.|+.
T Consensus 412 ~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~~ 486 (520)
T 2z7x_B 412 TDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 486 (520)
T ss_dssp CGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred Ccchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCcccCCc
Confidence 877776664 79999999999999 5676677999999999999999965555599999999999999999998874
No 37
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=3.4e-45 Score=422.63 Aligned_cols=436 Identities=17% Similarity=0.183 Sum_probs=289.8
Q ss_pred cEEEcCCCcCcccCCccccCCCCCCEEEccCCcccccCCccCCCCCCCCEEEcCCCcccccCCccccCCCCCcEEECCCc
Q 040925 2 QTLAVNDNYLTGQLPDFVGNLSDLEVIRIMGNSLGGKIPTTLGLLRNLVSLNVAENKFSGMFPRSICNISSLELIQLALN 81 (833)
Q Consensus 2 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N 81 (833)
+++++++|+++ .+|..+. ++|++|++++|+|++..|..|+.+++|++|+|++|+|+++.|++|.++++|++|+|++|
T Consensus 34 ~~l~ls~~~L~-~ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 110 (562)
T 3a79_B 34 SMVDYSNRNLT-HVPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHN 110 (562)
T ss_dssp CEEECTTSCCC-SCCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTS
T ss_pred cEEEcCCCCCc-cCCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCC
Confidence 58999999999 5777665 79999999999998888899999999999999999999999999999999999999999
Q ss_pred ccccccCchhhcCCCCccEEEccCCcceee-CCccccCCCCCcEEEcccCccccccCcCccCCCcC--ceEecccccC--
Q 040925 82 RFSGNLPFDIVVNLPNLKALAIGGNNFFGS-IPYSLSNASNLELLDLSVNQFKGNVSIDFSSLKNL--LWLNLEQNNL-- 156 (833)
Q Consensus 82 ~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L--~~L~L~~N~l-- 156 (833)
+++ .+|.. .+++|++|+|++|++++. .|..|+++++|++|+|++|+|+. ..|..+++| ++|+|++|.+
T Consensus 111 ~l~-~lp~~---~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~L~~n~l~~ 183 (562)
T 3a79_B 111 RLQ-NISCC---PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ---LDLLPVAHLHLSCILLDLVSYHI 183 (562)
T ss_dssp CCC-EECSC---CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCT---TTTGGGTTSCEEEEEEEESSCCC
T ss_pred cCC-ccCcc---ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCcccc---CchhhhhhceeeEEEeecccccc
Confidence 998 88876 799999999999999864 46899999999999999999985 356666776 9999999998
Q ss_pred CCCCCCCcccc--------------------cccCCCCCCCEEEccCCcCcc-cC---ChhHhhhcccccEEEccCcccc
Q 040925 157 GTGTATDLDFV--------------------TFLTNCSSLKALSLADNQFGG-EL---PHSIANLSSTVINFGIGRNQIS 212 (833)
Q Consensus 157 ~~~~~~~~~~~--------------------~~l~~l~~L~~L~Ls~N~l~~-~~---p~~~~~l~~~l~~L~l~~n~i~ 212 (833)
+...+..+... ..+.++++|+.|++++|+... .+ +..+..+ ..++.+++.++.++
T Consensus 184 ~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l-~~L~~L~L~~~~l~ 262 (562)
T 3a79_B 184 KGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRG-PTLLNVTLQHIETT 262 (562)
T ss_dssp CSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSC-SSCEEEEEEEEEEC
T ss_pred cccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhcc-CcceEEEecCCcCc
Confidence 55444332211 123456778888888875210 11 1122222 23445555555444
Q ss_pred ccCChh---hhcCCCCCeEeccCCcccccCCccc-----cCCCCCCEEEcccccCcccCC-ccccC---CCCCCeEEeec
Q 040925 213 GTIPPG---IRNLVNLIGFGAEENQLHGTIPDAI-----GELKNLQKLCLFRNFLQGRIP-SGLGN---LTKLANLELSS 280 (833)
Q Consensus 213 ~~~~~~---~~~l~~L~~L~L~~N~l~~~~~~~~-----~~l~~L~~L~L~~N~l~~~~~-~~~~~---l~~L~~L~L~~ 280 (833)
+..... ....++|++|++++|++.+.+|..+ ..+++|+.++++.|.+ .+| ..+.. ..+|+.|++++
T Consensus 263 ~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l~~ 340 (562)
T 3a79_B 263 WKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLSISD 340 (562)
T ss_dssp HHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSEEEEES
T ss_pred HHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhccccee--ecChhhhhhhhccCcceEEEccC
Confidence 321111 1123367777777777766666655 5555555555555555 122 22211 14566666666
Q ss_pred ccccCCCCCCCCCCCccceeecCCceecccCCcccccccccceeeecCCCccCCCC--CcccccCCCcCEEeccCCcCCC
Q 040925 281 NSLQGNIPSSLGNCQNLMSFTASQNKLTGALPHQLLSITTLSLYLDLSNNLLNGSL--PLQVGHLKNLVILDISSNQFSG 358 (833)
Q Consensus 281 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~ll~~L~ls~N~l~~~~--~~~~~~l~~L~~L~ls~N~l~~ 358 (833)
|.+.... ....+++|+.|++++|++++.+|..+..+..+ ++|++++|++++.. |..|.++++|++|++++|++++
T Consensus 341 n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L-~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~ 417 (562)
T 3a79_B 341 TPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRL-QTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNS 417 (562)
T ss_dssp SCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSC-CEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBS
T ss_pred CCccccc--CccCCCCceEEECCCCccccchhhhhcccCCC-CEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCC
Confidence 6654221 12456666666666666665556666555555 56666666666422 3446666666666666666665
Q ss_pred -CCCccccCCCCCcEEeecCCccccccCccccCCCCCCeEEccCcccCCCchhhhcCCCCCceEECccCcCccccCC-CC
Q 040925 359 -VIPGTLSTCVCLEYLDISSNSFHGVIPLSLSFLKSIKELNVSSNNLSGQIPEFLKNLSVLEFLSLSYNHFEGEVPT-KG 436 (833)
Q Consensus 359 -~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~-~~ 436 (833)
.++..|..+++|++|++++|++++..|..+. ++|+.|+|++|+++ .+|..+..+++|+.|+|++|+++..++. ..
T Consensus 418 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~ 494 (562)
T 3a79_B 418 HAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFD 494 (562)
T ss_dssp CCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCCCCTTSTT
T ss_pred ccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCCCCHHHHh
Confidence 3334566666666666666666654444333 56666666666666 3444444666666666666666655544 34
Q ss_pred ccCCCccccccCCcCCCCCc
Q 040925 437 VFSNKTKISLQGNMKLCGGI 456 (833)
Q Consensus 437 ~~~~~~~l~l~~N~~~c~~~ 456 (833)
.++.++.+++++|+|.|..+
T Consensus 495 ~l~~L~~L~l~~N~~~c~c~ 514 (562)
T 3a79_B 495 RLTSLQYIWLHDNPWDCTCP 514 (562)
T ss_dssp TCTTCCCEECCSCCBCCCHH
T ss_pred cCCCCCEEEecCCCcCCCcc
Confidence 55566666666666666544
No 38
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=1.2e-43 Score=399.27 Aligned_cols=385 Identities=18% Similarity=0.196 Sum_probs=246.1
Q ss_pred EEEccCCcccccCCccCCCCCCCCEEEcCCCcccccCCccccCCCCCcEEECCCcccccccCchhhcCCCCccEEEccCC
Q 040925 27 VIRIMGNSLGGKIPTTLGLLRNLVSLNVAENKFSGMFPRSICNISSLELIQLALNRFSGNLPFDIVVNLPNLKALAIGGN 106 (833)
Q Consensus 27 ~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N 106 (833)
.++.+++.+ +.+|. +. ++|++|+|++|.|+++.|..|.++++|++|+|++|.+.+.++...|.++++|++|+|++|
T Consensus 14 ~~~c~~~~l-~~lp~-l~--~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n 89 (455)
T 3v47_A 14 NAICINRGL-HQVPE-LP--AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89 (455)
T ss_dssp EEECCSSCC-SSCCC-CC--TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTC
T ss_pred ccCcCCCCc-ccCCC-CC--CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCC
Confidence 445555555 23333 21 455555555555555555555555555555555555544455555555555555555555
Q ss_pred cceeeCCccccCCCCCcEEEcccCcccccc--CcCccCCCcCceEecccccCCCCCCCCcccccccCCCCCCCEEEccCC
Q 040925 107 NFFGSIPYSLSNASNLELLDLSVNQFKGNV--SIDFSSLKNLLWLNLEQNNLGTGTATDLDFVTFLTNCSSLKALSLADN 184 (833)
Q Consensus 107 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~--~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~N 184 (833)
.+++..|..|+++++|++|+|++|++++.. ...|..+++|++|+|++|.++.+.+. ..+.++++|++|+|++|
T Consensus 90 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-----~~~~~l~~L~~L~L~~n 164 (455)
T 3v47_A 90 QFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPA-----SFFLNMRRFHVLDLTFN 164 (455)
T ss_dssp TTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCC-----GGGGGCTTCCEEECTTC
T ss_pred ccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcc-----cccCCCCcccEEeCCCC
Confidence 555555555555555555555555555422 22355555555555555555543221 12445555666666666
Q ss_pred cCcccCChhHhhhc-ccccEEEccCccccccCChh--------hhcCCCCCeEeccCCcccccCCccccCC---CCCCEE
Q 040925 185 QFGGELPHSIANLS-STVINFGIGRNQISGTIPPG--------IRNLVNLIGFGAEENQLHGTIPDAIGEL---KNLQKL 252 (833)
Q Consensus 185 ~l~~~~p~~~~~l~-~~l~~L~l~~n~i~~~~~~~--------~~~l~~L~~L~L~~N~l~~~~~~~~~~l---~~L~~L 252 (833)
++++..|..+..+. ..++.|++++|.+.+..+.. +..+++|++|++++|++.+..|..|... ++|+.|
T Consensus 165 ~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L 244 (455)
T 3v47_A 165 KVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSL 244 (455)
T ss_dssp CBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEE
T ss_pred cccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeE
Confidence 65555555544432 23455555555555443332 3355677788888888777777666543 677788
Q ss_pred EcccccCcccCCccccCCCCCCeEEeecccccCCCCCCCCCC--CccceeecCCceecccCCcccccccccceeeecCCC
Q 040925 253 CLFRNFLQGRIPSGLGNLTKLANLELSSNSLQGNIPSSLGNC--QNLMSFTASQNKLTGALPHQLLSITTLSLYLDLSNN 330 (833)
Q Consensus 253 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l--~~L~~L~l~~N~l~~~~p~~~~~~~~ll~~L~ls~N 330 (833)
++++|.+.+... ..+.+....+..+..+ ++|+.|++++|++++..|..+..+..+ ++|++++|
T Consensus 245 ~l~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L-~~L~Ls~n 309 (455)
T 3v47_A 245 ILSNSYNMGSSF--------------GHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDL-EQLTLAQN 309 (455)
T ss_dssp ECTTCTTTSCCT--------------TCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTC-CEEECTTS
T ss_pred eecccccccccc--------------chhhhccCcccccccccccCceEEEecCccccccchhhcccCCCC-CEEECCCC
Confidence 887776553211 1111221222222222 456666666666665555555555555 56667777
Q ss_pred ccCCCCCcccccCCCcCEEeccCCcCCCCCCccccCCCCCcEEeecCCccccccCccccCCCCCCeEEccCcccCCCchh
Q 040925 331 LLNGSLPLQVGHLKNLVILDISSNQFSGVIPGTLSTCVCLEYLDISSNSFHGVIPLSLSFLKSIKELNVSSNNLSGQIPE 410 (833)
Q Consensus 331 ~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~ 410 (833)
.+++..|..|.++++|++|+|++|.+++..|..|..+++|++|+|++|++++..|..|..+++|+.|+|++|++++..+.
T Consensus 310 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 389 (455)
T 3v47_A 310 EINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDG 389 (455)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred cccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHh
Confidence 77667777888999999999999999988899999999999999999999988899999999999999999999988888
Q ss_pred hhcCCCCCceEECccCcCccccCCC
Q 040925 411 FLKNLSVLEFLSLSYNHFEGEVPTK 435 (833)
Q Consensus 411 ~l~~l~~L~~L~l~~N~l~~~~~~~ 435 (833)
.+..+++|+.|++++|+++|.+|..
T Consensus 390 ~~~~l~~L~~L~l~~N~l~~~~~~~ 414 (455)
T 3v47_A 390 IFDRLTSLQKIWLHTNPWDCSCPRI 414 (455)
T ss_dssp TTTTCTTCCEEECCSSCBCCCTTTT
T ss_pred HhccCCcccEEEccCCCcccCCCcc
Confidence 8899999999999999999999864
No 39
>4b99_A Mitogen-activated protein kinase 7; transferase, inhibitor; HET: R4L; 2.80A {Homo sapiens}
Probab=100.00 E-value=8.8e-45 Score=393.76 Aligned_cols=266 Identities=20% Similarity=0.236 Sum_probs=202.8
Q ss_pred cCCccCceeccCcceEEEEEEECCCceEEEEEEeeccCC--cchhHHHHHHHHHhhcCCCccceEeeEeecCC-CCCCce
Q 040925 531 GEFSSSNMIGQGSFGYVYKGTLGEDEMIVAVKVINLKYK--GASRSFVAECEALRNIRHRNLIKIITICSSTD-FKGTDF 607 (833)
Q Consensus 531 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~--~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~-~~~~~~ 607 (833)
++|++.+.||+|+||+||+|+++.+|+.||||+++.... ...+.+.+|+++|++++|||||++++++.... +.+.+.
T Consensus 54 ~~Y~~~~~lG~G~fG~V~~a~~~~t~~~vAiK~i~~~~~~~~~~~~~~~Ei~il~~l~HpnIv~l~~~~~~~~~~~~~~~ 133 (398)
T 4b99_A 54 DEYEIIETIGNGAYGVVSSARRRLTGQQVAIKKIPNAFDVVTNAKRTLRELKILKHFKHDNIIAIKDILRPTVPYGEFKS 133 (398)
T ss_dssp SSEEEEEEEEECSSCEEEEEEETTTCCEEEEEEETTTTSSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSSCTTTCCC
T ss_pred CCeEEEEEEecccCeEEEEEEECCCCCEEEEEEECccccchHHHHHHHHHHHHHHhcCCCCcceEeeeeecccccccCCE
Confidence 579999999999999999999999999999999974432 23467889999999999999999999976542 344568
Q ss_pred EeEEEEecCCCChhhhhccCCCccccccCCHHHHHHHHHHHHHHHHHHhhcCCCCceeeCCCCCCeeecCCCcEEEcccc
Q 040925 608 KAFVFEYMENGSLKDWLHQSDDQVEVCKLSLIQRVNIAIDVASAMEYLHHHCQPPMVHGDLKPSNVLLDHDMVAHVCDFG 687 (833)
Q Consensus 608 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~gL~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kL~DfG 687 (833)
.|+|||||+ |+|.+++...+ .+++.+++.|+.||+.||+|||++ |||||||||+|||++.++.+||+|||
T Consensus 134 ~~ivmE~~~-g~L~~~i~~~~------~l~~~~~~~~~~qil~al~ylH~~---~iiHRDlKP~NIl~~~~~~~Ki~DFG 203 (398)
T 4b99_A 134 VYVVLDLME-SDLHQIIHSSQ------PLTLEHVRYFLYQLLRGLKYMHSA---QVIHRDLKPSNLLVNENCELKIGDFG 203 (398)
T ss_dssp EEEEEECCS-EEHHHHHTSSS------CCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCCGGGEEECTTCCEEECCCT
T ss_pred EEEEEeCCC-CCHHHHHHhcC------CCCHHHHHHHHHHHHHHHHHHHHC---cCcCCCcCccccccCCCCCEEEeecc
Confidence 999999996 68999998765 799999999999999999999999 99999999999999999999999999
Q ss_pred cccccCcccccccccCCCccccccccccccCccccCCC-CCCcccccccCCcCCCccccCCccHHHHHHHhCCCcccccc
Q 040925 688 LAKFLSDHQLDTAVKTPSSSIGLKGTVGYVAPEYGMGS-EASMTGDIFTGRRPIDAVFNEGHSLHEFAKTALPEKVMEIV 766 (833)
Q Consensus 688 ~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~Di~s~~~~~~~~~~~g~~l~~~~~~~~p~~~~~~~ 766 (833)
+|+.+...... ........+||+.|||||++.+. .++.++|||| .|+++|++++|..|+......
T Consensus 204 la~~~~~~~~~----~~~~~~~~~GT~~Y~APEv~~~~~~~~~~~DiWS----------lG~il~ell~G~~pF~g~~~~ 269 (398)
T 4b99_A 204 MARGLCTSPAE----HQYFMTEYVATRWYRAPELMLSLHEYTQAIDLWS----------VGCIFGEMLARRQLFPGKNYV 269 (398)
T ss_dssp TCBCC-----------CCCCCSSCCCCTTCCHHHHTTCSCCCTHHHHHH----------HHHHHHHHHHTSCSSCCSSHH
T ss_pred eeeecccCccc----cccccccceeChHhcCHHHhcCCCCCCChhheeh----------hHHHHHHHHHCCCCCCCCCHH
Confidence 99876443211 11223457899999999998875 4689999999 788889999998887522111
Q ss_pred ccc-------------ch--------hhhccccchh-hhhhhhchHHHHHHHHHHhhccCCCCCCCCCCHHHHHHH
Q 040925 767 DPS-------------LL--------MEVMTNNSMI-QEDKRVKTEECLNAIIRTGVLCSMESPFERMDMRDVVAK 820 (833)
Q Consensus 767 ~~~-------------~~--------~~~~~~~~~~-~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~ 820 (833)
+.- .. .......... ........+..++.+.+++.+||..||++|||++|++++
T Consensus 270 ~~l~~I~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dLl~~mL~~dP~~R~ta~e~L~H 345 (398)
T 4b99_A 270 HQLQLIMMVLGTPSPAVIQAVGAERVRAYIQSLPPRQPVPWETVYPGADRQALSLLGRMLRFEPSARISAAAALRH 345 (398)
T ss_dssp HHHHHHHHHHCCCCGGGTC-----CHHHHHHSSCCCCCCCHHHHSTTCCHHHHHHHHHHSCSSTTTSCCHHHHTTS
T ss_pred HHHHHHHHhcCCCChHHhhhhhhhhhhhhhhcCCCcCCCCHHHhCCCCCHHHHHHHHHHCcCChhHCcCHHHHhcC
Confidence 100 00 0000000000 000000111234678899999999999999999999864
No 40
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=8.7e-44 Score=410.87 Aligned_cols=409 Identities=19% Similarity=0.203 Sum_probs=313.7
Q ss_pred CCCCCCEEEccCCcccccCCccCCCCCCCCEEEcCCCcccccCCccccCCCCCcEEECCCcccccccCchhhcCCCCccE
Q 040925 21 NLSDLEVIRIMGNSLGGKIPTTLGLLRNLVSLNVAENKFSGMFPRSICNISSLELIQLALNRFSGNLPFDIVVNLPNLKA 100 (833)
Q Consensus 21 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~ 100 (833)
.+...+++++++|.+++ +|..+. ++|++|+|++|+|+++.|.+|.++++|++|+|++|+++ .++++.|.++++|++
T Consensus 29 ~~~~~~~l~ls~~~L~~-ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~ 104 (562)
T 3a79_B 29 SNELESMVDYSNRNLTH-VPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIR-SLDFHVFLFNQDLEY 104 (562)
T ss_dssp ----CCEEECTTSCCCS-CCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCC-EECTTTTTTCTTCCE
T ss_pred ccCCCcEEEcCCCCCcc-CCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCC-cCCHHHhCCCCCCCE
Confidence 34455899999999965 776665 89999999999999888899999999999999999998 777788999999999
Q ss_pred EEccCCcceeeCCccccCCCCCcEEEcccCcccccc-CcCccCCCcCceEecccccCCCCCCCCcccccccCCCCCC--C
Q 040925 101 LAIGGNNFFGSIPYSLSNASNLELLDLSVNQFKGNV-SIDFSSLKNLLWLNLEQNNLGTGTATDLDFVTFLTNCSSL--K 177 (833)
Q Consensus 101 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~-~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~l~~L--~ 177 (833)
|+|++|+|+. +|.. .+++|++|+|++|+|++++ +..|.++++|++|+|++|.++... +.++++| +
T Consensus 105 L~Ls~N~l~~-lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~---------~~~l~~L~L~ 172 (562)
T 3a79_B 105 LDVSHNRLQN-ISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLD---------LLPVAHLHLS 172 (562)
T ss_dssp EECTTSCCCE-ECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTT---------TGGGTTSCEE
T ss_pred EECCCCcCCc-cCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccCc---------hhhhhhceee
Confidence 9999999994 5555 8999999999999999876 478999999999999999997532 3344555 9
Q ss_pred EEEccCCcC--cccCChhHhhhcccccEEEccCccccccCCh-hhhcCCCCCeEeccCCc-----ccccCCccccCCCCC
Q 040925 178 ALSLADNQF--GGELPHSIANLSSTVINFGIGRNQISGTIPP-GIRNLVNLIGFGAEENQ-----LHGTIPDAIGELKNL 249 (833)
Q Consensus 178 ~L~Ls~N~l--~~~~p~~~~~l~~~l~~L~l~~n~i~~~~~~-~~~~l~~L~~L~L~~N~-----l~~~~~~~~~~l~~L 249 (833)
+|+|++|++ ++..|..+..+......++++.|.+.+..++ .+..+++|+.|++++|+ +.+ ....|.++++|
T Consensus 173 ~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~-~~~~l~~l~~L 251 (562)
T 3a79_B 173 CILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMT-FLSELTRGPTL 251 (562)
T ss_dssp EEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHH-HHHHHHSCSSC
T ss_pred EEEeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHH-HHHHHhccCcc
Confidence 999999999 8888988888765555678888888765553 45677788888888774 111 12234445554
Q ss_pred CEEEcccccCcccC----CccccCCCCCCeEEeecccccCCCCCCC-----CCC--------------------------
Q 040925 250 QKLCLFRNFLQGRI----PSGLGNLTKLANLELSSNSLQGNIPSSL-----GNC-------------------------- 294 (833)
Q Consensus 250 ~~L~L~~N~l~~~~----~~~~~~l~~L~~L~L~~N~l~~~~~~~~-----~~l-------------------------- 294 (833)
+.|+|+++.+.+.. +..+ ..++|++|++++|++++.+|..+ ..+
T Consensus 252 ~~L~L~~~~l~~~~~~~~~~~~-~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~ 330 (562)
T 3a79_B 252 LNVTLQHIETTWKCSVKLFQFF-WPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAE 330 (562)
T ss_dssp EEEEEEEEEECHHHHHHHHHHH-TTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHT
T ss_pred eEEEecCCcCcHHHHHHHHHhh-hcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhcc
Confidence 44444444433210 0111 11244444444444444444433 222
Q ss_pred CccceeecCCceecccCCcccccccccceeeecCCCccCCCCCcccccCCCcCEEeccCCcCCCCC--CccccCCCCCcE
Q 040925 295 QNLMSFTASQNKLTGALPHQLLSITTLSLYLDLSNNLLNGSLPLQVGHLKNLVILDISSNQFSGVI--PGTLSTCVCLEY 372 (833)
Q Consensus 295 ~~L~~L~l~~N~l~~~~p~~~~~~~~ll~~L~ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~--~~~~~~l~~L~~ 372 (833)
.+|+.|++++|.+.. .+. ...+..+ ++|++++|.+++..|..|+++++|++|++++|++++.. |..|..+++|++
T Consensus 331 ~~L~~L~l~~n~~~~-~~~-~~~l~~L-~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~ 407 (562)
T 3a79_B 331 MNIKMLSISDTPFIH-MVC-PPSPSSF-TFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLET 407 (562)
T ss_dssp CCCSEEEEESSCCCC-CCC-CSSCCCC-CEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCE
T ss_pred CcceEEEccCCCccc-ccC-ccCCCCc-eEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCE
Confidence 357777777777652 220 1344455 88999999999989999999999999999999999754 467999999999
Q ss_pred EeecCCcccc-ccCccccCCCCCCeEEccCcccCCCchhhhcCCCCCceEECccCcCccccCCCCccCCCccccccCCcC
Q 040925 373 LDISSNSFHG-VIPLSLSFLKSIKELNVSSNNLSGQIPEFLKNLSVLEFLSLSYNHFEGEVPTKGVFSNKTKISLQGNMK 451 (833)
Q Consensus 373 L~Ls~N~l~~-~~~~~~~~l~~L~~L~l~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~l~l~~N~~ 451 (833)
|++++|++++ .++..+..+++|+.|++++|++++..|..+. ++|+.|++++|.++..++....+.+++.+++++|..
T Consensus 408 L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N~l 485 (562)
T 3a79_B 408 LDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQL 485 (562)
T ss_dssp EECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCCCCCTTTTSSCCCSEEECCSSCC
T ss_pred EECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCcccChhhcCCCCCCEEECCCCCC
Confidence 9999999998 5556789999999999999999987776654 789999999999998777777889999999999975
Q ss_pred C
Q 040925 452 L 452 (833)
Q Consensus 452 ~ 452 (833)
.
T Consensus 486 ~ 486 (562)
T 3a79_B 486 K 486 (562)
T ss_dssp C
T ss_pred C
Confidence 4
No 41
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=7.2e-43 Score=410.83 Aligned_cols=425 Identities=21% Similarity=0.215 Sum_probs=342.2
Q ss_pred CcEEEcCCCcCcccCCccccCCCCCCEEEccCCcccccCCccCCCCCCCCEEEcCCCcccccCCccccCCCCCcEEECCC
Q 040925 1 LQTLAVNDNYLTGQLPDFVGNLSDLEVIRIMGNSLGGKIPTTLGLLRNLVSLNVAENKFSGMFPRSICNISSLELIQLAL 80 (833)
Q Consensus 1 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~ 80 (833)
|++|+|++|+|+++.|.+|.++++|++|+|++|+|++..+++|..+++|++|+|++|+|+++.+..|+++++|++|+|++
T Consensus 78 L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~ 157 (635)
T 4g8a_A 78 LQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAH 157 (635)
T ss_dssp CCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCS
T ss_pred CCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeecccc
Confidence 78999999999988888999999999999999999888888999999999999999999988888999999999999999
Q ss_pred cccccccCchhhcCCCCccEEEccCCcceeeCCccccCCCCCc----EEEcccCccccccCcCccCCCcCceEecccccC
Q 040925 81 NRFSGNLPFDIVVNLPNLKALAIGGNNFFGSIPYSLSNASNLE----LLDLSVNQFKGNVSIDFSSLKNLLWLNLEQNNL 156 (833)
Q Consensus 81 N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~----~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l 156 (833)
|.+++...+..+..+++|++|+|++|+|++..+..|..+.+++ .++++.|.++.+.+..+..+ .++.+++.+|..
T Consensus 158 N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~-~~~~l~l~~n~~ 236 (635)
T 4g8a_A 158 NLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFD 236 (635)
T ss_dssp SCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCS
T ss_pred CccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCcccccCcccccch-hhhhhhhhcccc
Confidence 9998333356778999999999999999998888887766544 78999999987776655443 344555554422
Q ss_pred C-------------------------------CCCCCCcc---------------------cccc---------------
Q 040925 157 G-------------------------------TGTATDLD---------------------FVTF--------------- 169 (833)
Q Consensus 157 ~-------------------------------~~~~~~~~---------------------~~~~--------------- 169 (833)
. ......+. ....
T Consensus 237 ~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~ 316 (635)
T 4g8a_A 237 SLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSV 316 (635)
T ss_dssp SHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESC
T ss_pred cccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhccccccccccc
Confidence 1 00000000 0011
Q ss_pred -------cCCCCCCCEEEccCCcCcccCChhHhhhcccccEEEccCccccccCChhhhcCCCCCeEeccCCcccc--cCC
Q 040925 170 -------LTNCSSLKALSLADNQFGGELPHSIANLSSTVINFGIGRNQISGTIPPGIRNLVNLIGFGAEENQLHG--TIP 240 (833)
Q Consensus 170 -------l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~--~~~ 240 (833)
+....+|+.|++++|.+....+..+ ..+..+++..|.+... ..+.++++|+.|++++|.+.. ..+
T Consensus 317 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l----~~L~~l~l~~n~~~~~--~~~~~l~~L~~L~ls~n~l~~~~~~~ 390 (635)
T 4g8a_A 317 TIERVKDFSYNFGWQHLELVNCKFGQFPTLKL----KSLKRLTFTSNKGGNA--FSEVDLPSLEFLDLSRNGLSFKGCCS 390 (635)
T ss_dssp EEEECGGGGSCCCCSEEEEESCEESSCCCCBC----TTCCEEEEESCCSCCB--CCCCBCTTCCEEECCSSCCBEEEECC
T ss_pred ccccccccccchhhhhhhcccccccCcCcccc----hhhhhcccccccCCCC--cccccccccccchhhccccccccccc
Confidence 2223345555555555443222211 2244555555555422 234578899999999999864 456
Q ss_pred ccccCCCCCCEEEcccccCcccCCccccCCCCCCeEEeecccccCCC-CCCCCCCCccceeecCCceecccCCccccccc
Q 040925 241 DAIGELKNLQKLCLFRNFLQGRIPSGLGNLTKLANLELSSNSLQGNI-PSSLGNCQNLMSFTASQNKLTGALPHQLLSIT 319 (833)
Q Consensus 241 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~ 319 (833)
..+..+.+|+.|+++.|.+.. .+..+..+++|+.+++++|+..... +..|.++++++.++++.|.+.+..|..+....
T Consensus 391 ~~~~~~~~L~~L~~~~~~~~~-~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~ 469 (635)
T 4g8a_A 391 QSDFGTISLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLS 469 (635)
T ss_dssp HHHHSCSCCCEEECCSCSEEE-ECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCT
T ss_pred cchhhhhhhhhhhcccccccc-ccccccccccccchhhhhccccccccccccccccccccccccccccccccccccccch
Confidence 677889999999999999984 5677889999999999998876554 45788999999999999999977777666666
Q ss_pred ccceeeecCCCcc-CCCCCcccccCCCcCEEeccCCcCCCCCCccccCCCCCcEEeecCCccccccCccccCCCCCCeEE
Q 040925 320 TLSLYLDLSNNLL-NGSLPLQVGHLKNLVILDISSNQFSGVIPGTLSTCVCLEYLDISSNSFHGVIPLSLSFLKSIKELN 398 (833)
Q Consensus 320 ~ll~~L~ls~N~l-~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 398 (833)
.+ +.|++++|.+ .+..|..|..+++|++|+|++|+|+++.|.+|.++++|++|+|++|+|+++.+..|..+++|+.|+
T Consensus 470 ~L-~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~ 548 (635)
T 4g8a_A 470 SL-EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLD 548 (635)
T ss_dssp TC-CEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEE
T ss_pred hh-hhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEE
Confidence 66 7899999984 445788999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCcccCCCchhhhcCC-CCCceEECccCcCccccCC
Q 040925 399 VSSNNLSGQIPEFLKNL-SVLEFLSLSYNHFEGEVPT 434 (833)
Q Consensus 399 l~~N~l~~~~p~~l~~l-~~L~~L~l~~N~l~~~~~~ 434 (833)
|++|+|++..|..+..+ ++|+.|+|++|+|.|.|..
T Consensus 549 Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~~ 585 (635)
T 4g8a_A 549 YSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEH 585 (635)
T ss_dssp CTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGGG
T ss_pred CCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCCc
Confidence 99999999999999998 6899999999999999975
No 42
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=4.6e-42 Score=386.51 Aligned_cols=383 Identities=18% Similarity=0.204 Sum_probs=269.7
Q ss_pred cEEEcCCCcCcccCCccccCCCCCCEEEccCCcccccCCccCCCCCCCCEEEcCCCccc-ccCCccccCCCCCcEEECCC
Q 040925 2 QTLAVNDNYLTGQLPDFVGNLSDLEVIRIMGNSLGGKIPTTLGLLRNLVSLNVAENKFS-GMFPRSICNISSLELIQLAL 80 (833)
Q Consensus 2 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~ 80 (833)
+.++.++++++ .+|. +. ++|++|+|++|++++..|..|+.+++|++|+|++|.+. .+.+..|.++++|++|+|++
T Consensus 13 ~~~~c~~~~l~-~lp~-l~--~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~ 88 (455)
T 3v47_A 13 YNAICINRGLH-QVPE-LP--AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDY 88 (455)
T ss_dssp TEEECCSSCCS-SCCC-CC--TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTT
T ss_pred cccCcCCCCcc-cCCC-CC--CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCC
Confidence 35677788887 5665 32 67888888888887777888888888888888888886 34467788888888888888
Q ss_pred cccccccCchhhcCCCCccEEEccCCcceeeCCcc--ccCCCCCcEEEcccCccccccCcC-ccCCCcCceEecccccCC
Q 040925 81 NRFSGNLPFDIVVNLPNLKALAIGGNNFFGSIPYS--LSNASNLELLDLSVNQFKGNVSID-FSSLKNLLWLNLEQNNLG 157 (833)
Q Consensus 81 N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~--~~~l~~L~~L~L~~N~i~~~~~~~-~~~l~~L~~L~L~~N~l~ 157 (833)
|+++ .+++..|.++++|++|+|++|.+++..|.. |.++++|++|+|++|+|+++.+.. |.++++|++|+|++|.++
T Consensus 89 n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~ 167 (455)
T 3v47_A 89 NQFL-QLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVK 167 (455)
T ss_dssp CTTC-EECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBS
T ss_pred CccC-ccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCccc
Confidence 8887 555566778888888888888887644433 888888888888888888776665 788888888888888887
Q ss_pred CCCCCCcccccccCCCCCCCEEEccCCcCcccCChhHh--------hhcccccEEEccCccccccCChhhhcC---CCCC
Q 040925 158 TGTATDLDFVTFLTNCSSLKALSLADNQFGGELPHSIA--------NLSSTVINFGIGRNQISGTIPPGIRNL---VNLI 226 (833)
Q Consensus 158 ~~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~--------~l~~~l~~L~l~~n~i~~~~~~~~~~l---~~L~ 226 (833)
......+.. + ...+|+.|++++|.+.+..+..+. .+ ..++.|++++|++++..|..+..+ .+|+
T Consensus 168 ~~~~~~l~~---l-~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~-~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~ 242 (455)
T 3v47_A 168 SICEEDLLN---F-QGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKN-TSITTLDLSGNGFKESMAKRFFDAIAGTKIQ 242 (455)
T ss_dssp CCCTTTSGG---G-TTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTT-CEEEEEECTTSCCCHHHHHHHHHHTTTCCEE
T ss_pred ccChhhhhc---c-ccccccccccccCcccccchhhcccccccccccc-ceeeeEecCCCcccccchhhhhcccccccee
Confidence 765543211 1 125788888888888754433322 11 347788888888888777777665 7888
Q ss_pred eEeccCCcccccCCccccCCCCCCEEEcccccCcccCCccccC--CCCCCeEEeecccccCCCCCCCCCCCccceeecCC
Q 040925 227 GFGAEENQLHGTIPDAIGELKNLQKLCLFRNFLQGRIPSGLGN--LTKLANLELSSNSLQGNIPSSLGNCQNLMSFTASQ 304 (833)
Q Consensus 227 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~--l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~ 304 (833)
.|++++|.+.+... ..+.+.+..+..+.+ .++|++|++++|++.+..|..|..+++|+.|++++
T Consensus 243 ~L~l~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~ 308 (455)
T 3v47_A 243 SLILSNSYNMGSSF--------------GHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQ 308 (455)
T ss_dssp EEECTTCTTTSCCT--------------TCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTT
T ss_pred eEeecccccccccc--------------chhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCC
Confidence 88888886653211 111122111222221 23455555555555544444555555555555555
Q ss_pred ceecccCCcccccccccceeeecCCCccCCCCCcccccCCCcCEEeccCCcCCCCCCccccCCCCCcEEeecCCcccccc
Q 040925 305 NKLTGALPHQLLSITTLSLYLDLSNNLLNGSLPLQVGHLKNLVILDISSNQFSGVIPGTLSTCVCLEYLDISSNSFHGVI 384 (833)
Q Consensus 305 N~l~~~~p~~~~~~~~ll~~L~ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 384 (833)
|++++..|..+..+..+ ++|++++|.+++..|..|..+++|++|+|++|++++..|..|..+++|++|+|++|++++++
T Consensus 309 n~l~~~~~~~~~~l~~L-~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 387 (455)
T 3v47_A 309 NEINKIDDNAFWGLTHL-LKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVP 387 (455)
T ss_dssp SCCCEECTTTTTTCTTC-CEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred CcccccChhHhcCcccC-CEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCC
Confidence 55554444444444444 45666666666566778888999999999999999888999999999999999999999888
Q ss_pred CccccCCCCCCeEEccCcccCCCch
Q 040925 385 PLSLSFLKSIKELNVSSNNLSGQIP 409 (833)
Q Consensus 385 ~~~~~~l~~L~~L~l~~N~l~~~~p 409 (833)
+..|..+++|+.|++++|++++..|
T Consensus 388 ~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 388 DGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp TTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred HhHhccCCcccEEEccCCCcccCCC
Confidence 8888999999999999999998766
No 43
>4f9c_A Cell division cycle 7-related protein kinase; Ser/Thr protein kinase, transferase, phosphorylation, cell C cell division, mitosis, S phase; HET: 0SX; 2.08A {Homo sapiens} PDB: 4f99_A* 4f9b_A* 4f9a_A*
Probab=100.00 E-value=1.3e-43 Score=380.57 Aligned_cols=204 Identities=24% Similarity=0.335 Sum_probs=168.3
Q ss_pred HhcCCccCceeccCcceEEEEEEEC---CCceEEEEEEeeccCCcchhHHHHHHHHHhhc-CCCccceEeeEeecCCCCC
Q 040925 529 ATGEFSSSNMIGQGSFGYVYKGTLG---EDEMIVAVKVINLKYKGASRSFVAECEALRNI-RHRNLIKIITICSSTDFKG 604 (833)
Q Consensus 529 ~~~~y~~~~~lg~G~~g~Vy~~~~~---~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~~~~~~~~~~~~~ 604 (833)
..++|++.+.||+|+||+||+|+++ .+++.||+|++... ....++.+|+++++.+ +|||||++++++.+.+
T Consensus 19 l~~~Y~i~~~lG~G~fg~Vy~a~~~~~~~~~~~vAiK~i~~~--~~~~~~~~E~~~l~~~~~h~nIv~l~~~~~~~~--- 93 (361)
T 4f9c_A 19 LSNVFKIEDKIGEGTFSSVYLATAQLQVGPEEKIALKHLIPT--SHPIRIAAELQCLTVAGGQDNVMGVKYCFRKND--- 93 (361)
T ss_dssp GGGTCEEEEEEEECSSEEEEEEEEEBTTSCEEEEEEEEECTT--SCHHHHHHHHHHHHHTCSBTTBCCCSEEEEETT---
T ss_pred ccCcEEEEEEEecccCcEEEEEEEcccCCCCCEEEEEEEccc--cCHHHHHHHHHHHHHhcCCCCCceEEEEEEECC---
Confidence 4578999999999999999999874 46889999998643 3345788999999998 6999999999976654
Q ss_pred CceEeEEEEecCCCChhhhhccCCCccccccCCHHHHHHHHHHHHHHHHHHhhcCCCCceeeCCCCCCeeecCC-CcEEE
Q 040925 605 TDFKAFVFEYMENGSLKDWLHQSDDQVEVCKLSLIQRVNIAIDVASAMEYLHHHCQPPMVHGDLKPSNVLLDHD-MVAHV 683 (833)
Q Consensus 605 ~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~gL~~LH~~~~~~ivH~Dlkp~NIll~~~-~~~kL 683 (833)
+.|+||||+++|+|.+++. .+++.+++.++.|++.||+|||++ |||||||||+|||++.+ +.+||
T Consensus 94 --~~~lvmE~~~g~~L~~~~~---------~l~~~~~~~~~~qll~al~ylH~~---gIiHRDiKPeNiLl~~~~~~~kl 159 (361)
T 4f9c_A 94 --HVVIAMPYLEHESFLDILN---------SLSFQEVREYMLNLFKALKRIHQF---GIVHRDVKPSNFLYNRRLKKYAL 159 (361)
T ss_dssp --EEEEEEECCCCCCHHHHHT---------TCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEETTTTEEEE
T ss_pred --EEEEEEeCCCcccHHHHHc---------CCCHHHHHHHHHHHHHHHHHHHHC---CeEeCcCCHHHeEEeCCCCeEEE
Confidence 8999999999999999984 588999999999999999999999 99999999999999877 79999
Q ss_pred cccccccccCccccccc--------------------ccCCCccccccccccccCccccCCC-CCCcccccccCCcCCCc
Q 040925 684 CDFGLAKFLSDHQLDTA--------------------VKTPSSSIGLKGTVGYVAPEYGMGS-EASMTGDIFTGRRPIDA 742 (833)
Q Consensus 684 ~DfG~a~~~~~~~~~~~--------------------~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~Di~s~~~~~~~ 742 (833)
+|||+|+...+...... ..........+||+.|||||++.+. .|+.++||||
T Consensus 160 ~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~y~~~~DiWS------- 232 (361)
T 4f9c_A 160 VDFGLAQGTHDTKIELLKFVQSEAQQERCSQNKCSICLSRRQQVAPRAGTPGFRAPEVLTKCPNQTTAIDMWS------- 232 (361)
T ss_dssp CCCTTCEECTTCSCGGGGGC--------------------------CCCCGGGCCHHHHTTCSCCCTHHHHHH-------
T ss_pred CcCCCCcccCCccccccccccccccccccccccccccccccccccccccCccccCHHHHcCCCCCCCccchhh-------
Confidence 99999986544321100 0011122346799999999998875 4899999999
Q ss_pred cccCCccHHHHHHHhCCCc
Q 040925 743 VFNEGHSLHEFAKTALPEK 761 (833)
Q Consensus 743 ~~~~g~~l~~~~~~~~p~~ 761 (833)
.|+++|++++|..|+.
T Consensus 233 ---lG~il~ell~G~~Pf~ 248 (361)
T 4f9c_A 233 ---AGVIFLSLLSGRYPFY 248 (361)
T ss_dssp ---HHHHHHHHHHTCSSSS
T ss_pred ---hHHHHHHHHHCCCCCC
Confidence 8888999999988874
No 44
>3v5w_A G-protein coupled receptor kinase 2; inhibitor complex, protein kinase, beta propeller, RGS homol domain; HET: 8PR; 2.07A {Homo sapiens} PDB: 3cik_A* 3krw_A* 3krx_A* 1omw_A 1ym7_A 2bcj_A* 3uzs_A 3uzt_A 3pvu_A* 3psc_A* 3pvw_A* 1bak_A
Probab=100.00 E-value=1.5e-43 Score=398.70 Aligned_cols=251 Identities=21% Similarity=0.243 Sum_probs=200.7
Q ss_pred hcCCccCceeccCcceEEEEEEECCCceEEEEEEeeccC---CcchhHHHH---HHHHHhhcCCCccceEeeEeecCCCC
Q 040925 530 TGEFSSSNMIGQGSFGYVYKGTLGEDEMIVAVKVINLKY---KGASRSFVA---ECEALRNIRHRNLIKIITICSSTDFK 603 (833)
Q Consensus 530 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~---~~~~~~~~~---E~~~l~~l~h~niv~~~~~~~~~~~~ 603 (833)
.++|++.+.||+|+||+||+|+++.+|+.||||+++... ......+.+ ++.+++.++|||||++++++.+.+
T Consensus 188 lddf~i~k~LG~G~fG~V~la~~~~tg~~~AiK~i~K~~i~~~~~~~~~~~E~~~l~ll~~~~HP~IV~l~~~f~~~~-- 265 (689)
T 3v5w_A 188 MNDFSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMSYAFHTPD-- 265 (689)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHSSSCCTTBCCEEEEEECSS--
T ss_pred hHHeEEEEEEecccCeEEEEEEECCCCCEEEEEEEeHHHcchhhhHHHHHHHHHHHHHHhhCCCCCEeEEEEEEEECC--
Confidence 467999999999999999999999999999999996431 222233334 456677789999999999976655
Q ss_pred CCceEeEEEEecCCCChhhhhccCCCccccccCCHHHHHHHHHHHHHHHHHHhhcCCCCceeeCCCCCCeeecCCCcEEE
Q 040925 604 GTDFKAFVFEYMENGSLKDWLHQSDDQVEVCKLSLIQRVNIAIDVASAMEYLHHHCQPPMVHGDLKPSNVLLDHDMVAHV 683 (833)
Q Consensus 604 ~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~gL~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kL 683 (833)
..|+|||||+||+|.+++...+ .+++..++.|+.||+.||+|||++ |||||||||+|||++.+|.+||
T Consensus 266 ---~lylVmEy~~GGdL~~~l~~~~------~l~E~~a~~y~~qIl~aL~yLH~~---gIiHRDLKPeNILld~~G~vKL 333 (689)
T 3v5w_A 266 ---KLSFILDLMNGGDLHYHLSQHG------VFSEADMRFYAAEIILGLEHMHNR---FVVYRDLKPANILLDEHGHVRI 333 (689)
T ss_dssp ---EEEEEECCCCSCBHHHHHHHHC------CCCHHHHHHHHHHHHHHHHHHHTT---TEECCCCSGGGEEECTTSCEEE
T ss_pred ---EEEEEEecCCCCcHHHHHHhcC------CCCHHHHHHHHHHHHHHHHHHHHC---CccccCCchHHeEEeCCCCEEe
Confidence 8999999999999999998754 799999999999999999999999 9999999999999999999999
Q ss_pred cccccccccCcccccccccCCCccccccccccccCccccCC-CCCCcccccccCCcCCCccccCCccHHHHHHHhCCCcc
Q 040925 684 CDFGLAKFLSDHQLDTAVKTPSSSIGLKGTVGYVAPEYGMG-SEASMTGDIFTGRRPIDAVFNEGHSLHEFAKTALPEKV 762 (833)
Q Consensus 684 ~DfG~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Di~s~~~~~~~~~~~g~~l~~~~~~~~p~~~ 762 (833)
+|||+|+...... ....+||+.|||||++.+ ..|+.++|||| .|+++|++++|..|+..
T Consensus 334 ~DFGlA~~~~~~~----------~~t~~GTp~YmAPEvl~~~~~y~~~vDiWS----------LGvilYEmLtG~~PF~~ 393 (689)
T 3v5w_A 334 SDLGLACDFSKKK----------PHASVGTHGYMAPEVLQKGVAYDSSADWFS----------LGCMLFKLLRGHSPFRQ 393 (689)
T ss_dssp CCCTTCEECSSCC----------CCSCCSCGGGCCHHHHSTTCCCCTHHHHHH----------HHHHHHHHHHSSCTTCG
T ss_pred cccceeeecCCCC----------CCCccCCcCccCHHHHhCCCCCCcHHHHHH----------HHHHHHHHHhCCCCCCC
Confidence 9999998764422 234679999999999864 57999999999 89999999999999864
Q ss_pred cccccccchhhhccccchhhhhhhhchHHHHHHHHHHhhccCCCCCCCCCC-----HHHHHHH
Q 040925 763 MEIVDPSLLMEVMTNNSMIQEDKRVKTEECLNAIIRTGVLCSMESPFERMD-----MRDVVAK 820 (833)
Q Consensus 763 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt-----~~eil~~ 820 (833)
....+.......+.. .....+..+++.+.+++.+||.+||++|++ ++||.++
T Consensus 394 ~~~~~~~~i~~~i~~------~~~~~p~~~S~~a~dLI~~lL~~dP~~Rl~~~~~ga~ei~~H 450 (689)
T 3v5w_A 394 HKTKDKHEIDRMTLT------MAVELPDSFSPELRSLLEGLLQRDVNRRLGCLGRGAQEVKES 450 (689)
T ss_dssp GGCCCHHHHHHHHHH------CCCCCCTTSCHHHHHHHHHHTCSCGGGCTTCSSSTHHHHTTS
T ss_pred CChHHHHHHHHhhcC------CCCCCCccCCHHHHHHHHHHccCCHhHCCCCCCCCHHHHhcC
Confidence 332221111111100 011122335667899999999999999998 6777654
No 45
>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A
Probab=100.00 E-value=5.6e-43 Score=398.96 Aligned_cols=254 Identities=19% Similarity=0.234 Sum_probs=208.5
Q ss_pred hcCCccCceeccCcceEEEEEEECCCceEEEEEEeeccCCcchhHHHHHHHHHhhcCCCccceEeeEeecCCCCCCceEe
Q 040925 530 TGEFSSSNMIGQGSFGYVYKGTLGEDEMIVAVKVINLKYKGASRSFVAECEALRNIRHRNLIKIITICSSTDFKGTDFKA 609 (833)
Q Consensus 530 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~~ 609 (833)
.++|++.+.||+|+||.||+|+++.+|+.||+|+++.......+.+.+|+++|+.++|||||++++++.+.. ..|
T Consensus 156 l~~Y~i~~~lG~G~fg~V~~~~~~~tg~~~AiK~i~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~-----~~~ 230 (573)
T 3uto_A 156 LDHYDIHEELGTGAFGVVHRVTERATGNNFAAKFVMTPHESDKETVRKEIQTMSVLRHPTLVNLHDAFEDDN-----EMV 230 (573)
T ss_dssp GGTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHHHTCCTTBCCEEEEEECSS-----EEE
T ss_pred ccccEEEEEEeeccCeEEEEEEECCCCCEEEEEEEeccchhhHHHHHHHHHHHHhCCCCCCCeEEEEEEECC-----EEE
Confidence 468999999999999999999999999999999997665555678899999999999999999999976554 899
Q ss_pred EEEEecCCCChhhhhccCCCccccccCCHHHHHHHHHHHHHHHHHHhhcCCCCceeeCCCCCCeeecCC--CcEEEcccc
Q 040925 610 FVFEYMENGSLKDWLHQSDDQVEVCKLSLIQRVNIAIDVASAMEYLHHHCQPPMVHGDLKPSNVLLDHD--MVAHVCDFG 687 (833)
Q Consensus 610 lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~gL~~LH~~~~~~ivH~Dlkp~NIll~~~--~~~kL~DfG 687 (833)
+|||||+||+|.+++..... .+++.++..++.||+.||+|||++ +|+||||||+|||++.+ +.+||+|||
T Consensus 231 iv~E~~~gg~L~~~i~~~~~-----~l~e~~~~~~~~qi~~al~ylH~~---~iiHRDlKp~Nill~~~~~~~vKl~DFG 302 (573)
T 3uto_A 231 MIYEFMSGGELFEKVADEHN-----KMSEDEAVEYMRQVCKGLCHMHEN---NYVHLDLKPENIMFTTKRSNELKLIDFG 302 (573)
T ss_dssp EEEECCCCCBHHHHHTCTTS-----CEEHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEESSSSCCCEEECCCS
T ss_pred EEEeecCCCcHHHHHHHhCC-----CCCHHHHHHHHHHHHHHHHHHHHC---CeeeccCChhhccccCCCCCCEEEeecc
Confidence 99999999999999975432 689999999999999999999999 99999999999999854 899999999
Q ss_pred cccccCcccccccccCCCccccccccccccCccccCCCCCCcccccccCCcCCCccccCCccHHHHHHHhCCCccccccc
Q 040925 688 LAKFLSDHQLDTAVKTPSSSIGLKGTVGYVAPEYGMGSEASMTGDIFTGRRPIDAVFNEGHSLHEFAKTALPEKVMEIVD 767 (833)
Q Consensus 688 ~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~s~~~~~~~~~~~g~~l~~~~~~~~p~~~~~~~~ 767 (833)
+|+.+..... ....+||+.|||||++.+..|+.++|||| .|+++|++++|..|+.....
T Consensus 303 ~a~~~~~~~~---------~~~~~GT~~y~APEv~~~~~y~~~~DiWS----------lGvilyeml~G~~Pf~~~~~-- 361 (573)
T 3uto_A 303 LTAHLDPKQS---------VKVTTGTAEFAAPEVAEGKPVGYYTDMWS----------VGVLSYILLSGLSPFGGEND-- 361 (573)
T ss_dssp SCEECCTTSE---------EEEECSSGGGCCHHHHTTCCBCHHHHHHH----------HHHHHHHHHHSCCSSCCSSH--
T ss_pred ceeEccCCCc---------eeeeEECccccCHHHhCCCCCCcHHHHHH----------HHHHHHHHHHCCCCCCCcCH--
Confidence 9987654321 22357999999999999999999999999 88899999999999753221
Q ss_pred ccchhhhccccchhhhhhhhchHHHHHHHHHHhhccCCCCCCCCCCHHHHHHH
Q 040925 768 PSLLMEVMTNNSMIQEDKRVKTEECLNAIIRTGVLCSMESPFERMDMRDVVAK 820 (833)
Q Consensus 768 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~ 820 (833)
.............. .......+++.+.+++.+||+.||++|||++|++++
T Consensus 362 ~~~~~~i~~~~~~~---~~~~~~~~s~~~~dli~~~L~~dp~~R~t~~e~l~H 411 (573)
T 3uto_A 362 DETLRNVKSCDWNM---DDSAFSGISEDGKDFIRKLLLADPNTRMTIHQALEH 411 (573)
T ss_dssp HHHHHHHHTTCCCC---CSGGGTTSCHHHHHHHHTTSCSSGGGSCCHHHHHHS
T ss_pred HHHHHHHHhCCCCC---CcccccCCCHHHHHHHHHHccCChhHCcCHHHHhcC
Confidence 11111111111111 111122345678899999999999999999999873
No 46
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=2e-41 Score=383.43 Aligned_cols=349 Identities=22% Similarity=0.212 Sum_probs=229.8
Q ss_pred EEECCCcccccccCchhhcCCCCccEEEccCCcceeeCCccccCCCCCcEEEcccCccccccCcCccCCCcCceEecccc
Q 040925 75 LIQLALNRFSGNLPFDIVVNLPNLKALAIGGNNFFGSIPYSLSNASNLELLDLSVNQFKGNVSIDFSSLKNLLWLNLEQN 154 (833)
Q Consensus 75 ~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N 154 (833)
.++++++.++ .+|..+. ++|+.|+|++|+|++..+..|.++++|++|+|++|+|+++.+..|.++++|++|+|++|
T Consensus 15 ~v~c~~~~l~-~ip~~~~---~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n 90 (477)
T 2id5_A 15 AVLCHRKRFV-AVPEGIP---TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN 90 (477)
T ss_dssp EEECCSCCCS-SCCSCCC---TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred EEEeCCCCcC-cCCCCCC---CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCC
Confidence 3444444444 4443321 34455555555555444445555555555555555555555555555555555555555
Q ss_pred cCCCCCCCCcccccccCCCCCCCEEEccCCcCcccCChhHhhhcccccEEEccCccccccCChhhhcCCCCCeEeccCCc
Q 040925 155 NLGTGTATDLDFVTFLTNCSSLKALSLADNQFGGELPHSIANLSSTVINFGIGRNQISGTIPPGIRNLVNLIGFGAEENQ 234 (833)
Q Consensus 155 ~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~N~ 234 (833)
+++.++.. .|.++++|++|+|++|++++ ..+..|.++++|+.|++++|+
T Consensus 91 ~l~~~~~~------~~~~l~~L~~L~Ls~n~i~~-------------------------~~~~~~~~l~~L~~L~l~~n~ 139 (477)
T 2id5_A 91 RLKLIPLG------VFTGLSNLTKLDISENKIVI-------------------------LLDYMFQDLYNLKSLEVGDND 139 (477)
T ss_dssp CCCSCCTT------SSTTCTTCCEEECTTSCCCE-------------------------ECTTTTTTCTTCCEEEECCTT
T ss_pred cCCccCcc------cccCCCCCCEEECCCCcccc-------------------------CChhHccccccCCEEECCCCc
Confidence 55444331 23445555555555555542 223334445555555555555
Q ss_pred ccccCCccccCCCCCCEEEcccccCcccCCccccCCCCCCeEEeecccccCCCCCCCCCCCccceeecCCceecccCCcc
Q 040925 235 LHGTIPDAIGELKNLQKLCLFRNFLQGRIPSGLGNLTKLANLELSSNSLQGNIPSSLGNCQNLMSFTASQNKLTGALPHQ 314 (833)
Q Consensus 235 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~ 314 (833)
+.++.+..|.++++|++|+|++|.+++..+..|.++++|+.|+|++|.+.+..+..|..+++|+.|++++|.+.+.+|..
T Consensus 140 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~ 219 (477)
T 2id5_A 140 LVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPN 219 (477)
T ss_dssp CCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTT
T ss_pred cceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcc
Confidence 55555555555555555555555555444445555555556666655555555555555566666666655555555555
Q ss_pred cccccccceeeecCCCccCCCCCcccccCCCcCEEeccCCcCCCCCCccccCCCCCcEEeecCCccccccCccccCCCCC
Q 040925 315 LLSITTLSLYLDLSNNLLNGSLPLQVGHLKNLVILDISSNQFSGVIPGTLSTCVCLEYLDISSNSFHGVIPLSLSFLKSI 394 (833)
Q Consensus 315 ~~~~~~ll~~L~ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 394 (833)
.+....+ ++|++++|.++...+..|..+++|+.|+|++|.+++..+..|..+++|++|+|++|+++++.|..|..+++|
T Consensus 220 ~~~~~~L-~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 298 (477)
T 2id5_A 220 CLYGLNL-TSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYL 298 (477)
T ss_dssp TTTTCCC-SEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTC
T ss_pred cccCccc-cEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccC
Confidence 5554444 677788888875555678899999999999999998888999999999999999999999999999999999
Q ss_pred CeEEccCcccCCCchhhhcCCCCCceEECccCcCccccCCCCccCCCccccccCCcCCCCCcccC
Q 040925 395 KELNVSSNNLSGQIPEFLKNLSVLEFLSLSYNHFEGEVPTKGVFSNKTKISLQGNMKLCGGIDEL 459 (833)
Q Consensus 395 ~~L~l~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~l~l~~N~~~c~~~~~~ 459 (833)
+.|+|++|++++..+..|..+++|+.|++++|+|.|.|+..+.+.......+.++...|+.|...
T Consensus 299 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~~~~~~~~~~~~~~~~~~~~C~~p~~~ 363 (477)
T 2id5_A 299 RVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRLLWVFRRRWRLNFNRQQPTCATPEFV 363 (477)
T ss_dssp CEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGGGHHHHTTTTSSCCTTCCCBEEESGGG
T ss_pred CEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccchHhHHhhhhccccCccCceeCCchHH
Confidence 99999999999888888999999999999999999998865555555567788888899877643
No 47
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=4.2e-41 Score=375.10 Aligned_cols=387 Identities=24% Similarity=0.292 Sum_probs=270.9
Q ss_pred CcEEEcCCCcCcccCCccccCCCCCCEEEccCCcccccCCccCCCCCCC-------------CEEEcCCCcccccCCccc
Q 040925 1 LQTLAVNDNYLTGQLPDFVGNLSDLEVIRIMGNSLGGKIPTTLGLLRNL-------------VSLNVAENKFSGMFPRSI 67 (833)
Q Consensus 1 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L-------------~~L~L~~n~i~~~~~~~~ 67 (833)
|++|++++|.+ +.+|++|+++++|++|++++|++.+.+|..++.+++| ++|++++|.+++ +|..
T Consensus 13 L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~-lp~~- 89 (454)
T 1jl5_A 13 LQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS-LPEL- 89 (454)
T ss_dssp ----------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSC-CCSC-
T ss_pred chhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCcccc-CCCC-
Confidence 68899999999 5899999999999999999999999999999998875 999999999985 4442
Q ss_pred cCCCCCcEEECCCcccccccCchhhcCCCCccEEEccCCcceeeCCccccCCCCCcEEEcccCccccccCcCccCCCcCc
Q 040925 68 CNISSLELIQLALNRFSGNLPFDIVVNLPNLKALAIGGNNFFGSIPYSLSNASNLELLDLSVNQFKGNVSIDFSSLKNLL 147 (833)
Q Consensus 68 ~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~ 147 (833)
.++|+.|++++|.++ .+|. .+++|++|++++|++++ +|.. .++|++|++++|++++++ .|.++++|+
T Consensus 90 --~~~L~~L~l~~n~l~-~lp~----~~~~L~~L~l~~n~l~~-l~~~---~~~L~~L~L~~n~l~~lp--~~~~l~~L~ 156 (454)
T 1jl5_A 90 --PPHLESLVASCNSLT-ELPE----LPQSLKSLLVDNNNLKA-LSDL---PPLLEYLGVSNNQLEKLP--ELQNSSFLK 156 (454)
T ss_dssp --CTTCSEEECCSSCCS-SCCC----CCTTCCEEECCSSCCSC-CCSC---CTTCCEEECCSSCCSSCC--CCTTCTTCC
T ss_pred --cCCCCEEEccCCcCC-cccc----ccCCCcEEECCCCccCc-ccCC---CCCCCEEECcCCCCCCCc--ccCCCCCCC
Confidence 478999999999998 5774 34899999999999984 3322 278999999999999865 599999999
Q ss_pred eEecccccCCCCCCCCcccccccCCCCCCCEEEccCCcCcccCChhHhhhcccccEEEccCccccccCChhhhcCCCCCe
Q 040925 148 WLNLEQNNLGTGTATDLDFVTFLTNCSSLKALSLADNQFGGELPHSIANLSSTVINFGIGRNQISGTIPPGIRNLVNLIG 227 (833)
Q Consensus 148 ~L~L~~N~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~ 227 (833)
+|++++|+++.++. ..++|++|++++|++++ +| .+.++. .++.|++++|++++ +|.. .++|++
T Consensus 157 ~L~l~~N~l~~lp~----------~~~~L~~L~L~~n~l~~-l~-~~~~l~-~L~~L~l~~N~l~~-l~~~---~~~L~~ 219 (454)
T 1jl5_A 157 IIDVDNNSLKKLPD----------LPPSLEFIAAGNNQLEE-LP-ELQNLP-FLTAIYADNNSLKK-LPDL---PLSLES 219 (454)
T ss_dssp EEECCSSCCSCCCC----------CCTTCCEEECCSSCCSS-CC-CCTTCT-TCCEEECCSSCCSS-CCCC---CTTCCE
T ss_pred EEECCCCcCcccCC----------CcccccEEECcCCcCCc-Cc-cccCCC-CCCEEECCCCcCCc-CCCC---cCcccE
Confidence 99999999987553 12589999999999995 66 566654 48899999999986 3432 258999
Q ss_pred EeccCCcccccCCccccCCCCCCEEEcccccCcccCCccccCCCCCCeEEeecccccCCCCCCCCCCCccceeecCCcee
Q 040925 228 FGAEENQLHGTIPDAIGELKNLQKLCLFRNFLQGRIPSGLGNLTKLANLELSSNSLQGNIPSSLGNCQNLMSFTASQNKL 307 (833)
Q Consensus 228 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l 307 (833)
|++++|++. .+| .|+.+++|++|++++|.+++ +|.. +++|+.|++++|++++ +|.. .++|+.|++++|++
T Consensus 220 L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l 289 (454)
T 1jl5_A 220 IVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKT-LPDL---PPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIF 289 (454)
T ss_dssp EECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSS-CCSC---CTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCC
T ss_pred EECcCCcCC-ccc-ccCCCCCCCEEECCCCcCCc-cccc---ccccCEEECCCCcccc-cCcc---cCcCCEEECcCCcc
Confidence 999999998 556 48999999999999999985 4543 4789999999999985 5543 37899999999999
Q ss_pred cccCCcccccccccceeeecCCCccCCCCCcccccC-CCcCEEeccCCcCCCCCCccccCCCCCcEEeecCCccccccCc
Q 040925 308 TGALPHQLLSITTLSLYLDLSNNLLNGSLPLQVGHL-KNLVILDISSNQFSGVIPGTLSTCVCLEYLDISSNSFHGVIPL 386 (833)
Q Consensus 308 ~~~~p~~~~~~~~ll~~L~ls~N~l~~~~~~~~~~l-~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 386 (833)
++ +|.. ...+++|++++|.+++. + .+ ++|++|++++|++++ +|.. +++|+.|++++|+++++ |.
T Consensus 290 ~~-l~~~----~~~L~~L~l~~N~l~~i-~----~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~~l-p~ 354 (454)
T 1jl5_A 290 SG-LSEL----PPNLYYLNASSNEIRSL-C----DLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLAEV-PE 354 (454)
T ss_dssp SE-ESCC----CTTCCEEECCSSCCSEE-C----CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSCC-CC
T ss_pred Cc-ccCc----CCcCCEEECcCCcCCcc-c----CCcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCccccc-cc
Confidence 84 3321 12337899999999852 2 23 589999999999986 4443 58899999999999954 44
Q ss_pred cccCCCCCCeEEccCcccCC--CchhhhcCC-------------CCCceEECccCcCcc--ccCCCCccCCCccccccCC
Q 040925 387 SLSFLKSIKELNVSSNNLSG--QIPEFLKNL-------------SVLEFLSLSYNHFEG--EVPTKGVFSNKTKISLQGN 449 (833)
Q Consensus 387 ~~~~l~~L~~L~l~~N~l~~--~~p~~l~~l-------------~~L~~L~l~~N~l~~--~~~~~~~~~~~~~l~l~~N 449 (833)
.+++|+.|++++|++++ .+|..+..+ ++|+.||+++|++++ .+| ..+..+.+.+|
T Consensus 355 ---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~~iP-----~sl~~L~~~~~ 426 (454)
T 1jl5_A 355 ---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDIP-----ESVEDLRMNSE 426 (454)
T ss_dssp ---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC---------------------------------------------
T ss_pred ---hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCccccch-----hhHhheeCcCc
Confidence 47899999999999998 678888877 789999999999987 333 23455566666
Q ss_pred cCCC
Q 040925 450 MKLC 453 (833)
Q Consensus 450 ~~~c 453 (833)
...|
T Consensus 427 ~~~~ 430 (454)
T 1jl5_A 427 RVVD 430 (454)
T ss_dssp ----
T ss_pred ccCC
Confidence 5443
No 48
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=9.2e-40 Score=367.92 Aligned_cols=349 Identities=28% Similarity=0.395 Sum_probs=268.0
Q ss_pred CCCCCCEEEccCCcccccCCccCCCCCCCCEEEcCCCcccccCCccccCCCCCcEEECCCcccccccCchhhcCCCCccE
Q 040925 21 NLSDLEVIRIMGNSLGGKIPTTLGLLRNLVSLNVAENKFSGMFPRSICNISSLELIQLALNRFSGNLPFDIVVNLPNLKA 100 (833)
Q Consensus 21 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~ 100 (833)
.+++|+.|++++|.+.. +|. +..+++|++|+|++|.+++..+ |.++++|++|++++|.++ .+++ |.++++|++
T Consensus 44 ~l~~l~~L~l~~~~i~~-l~~-~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~-~~~~--~~~l~~L~~ 116 (466)
T 1o6v_A 44 DLDQVTTLQADRLGIKS-IDG-VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIA-DITP--LANLTNLTG 116 (466)
T ss_dssp HHHTCCEEECCSSCCCC-CTT-GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-CCGG--GTTCTTCCE
T ss_pred HhccccEEecCCCCCcc-Ccc-hhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccc-cChh--hcCCCCCCE
Confidence 45688899999998854 553 7888999999999999986544 889999999999999987 5554 788999999
Q ss_pred EEccCCcceeeCCccccCCCCCcEEEcccCccccccCcCccCCCcCceEecccccCCCCCCCCcccccccCCCCCCCEEE
Q 040925 101 LAIGGNNFFGSIPYSLSNASNLELLDLSVNQFKGNVSIDFSSLKNLLWLNLEQNNLGTGTATDLDFVTFLTNCSSLKALS 180 (833)
Q Consensus 101 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~l~~L~~L~ 180 (833)
|+|++|.+++..+ |.++++|++|++++|+++++. .+..+++|++|+++ |.+... ..+.++++|++|+
T Consensus 117 L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~l~-~~~~~~--------~~~~~l~~L~~L~ 183 (466)
T 1o6v_A 117 LTLFNNQITDIDP--LKNLTNLNRLELSSNTISDIS--ALSGLTSLQQLSFG-NQVTDL--------KPLANLTTLERLD 183 (466)
T ss_dssp EECCSSCCCCCGG--GTTCTTCSEEEEEEEEECCCG--GGTTCTTCSEEEEE-ESCCCC--------GGGTTCTTCCEEE
T ss_pred EECCCCCCCCChH--HcCCCCCCEEECCCCccCCCh--hhccCCcccEeecC-CcccCc--------hhhccCCCCCEEE
Confidence 9999998885543 888999999999999988754 48888999999986 444332 2277888899999
Q ss_pred ccCCcCcccCChhHhhhcccccEEEccCccccccCChhhhcCCCCCeEeccCCcccccCCccccCCCCCCEEEcccccCc
Q 040925 181 LADNQFGGELPHSIANLSSTVINFGIGRNQISGTIPPGIRNLVNLIGFGAEENQLHGTIPDAIGELKNLQKLCLFRNFLQ 260 (833)
Q Consensus 181 Ls~N~l~~~~p~~~~~l~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 260 (833)
+++|++++ + ..+..+++|+.|++++|++.+..| ++.+++|++|++++|.++
T Consensus 184 l~~n~l~~-~--------------------------~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~ 234 (466)
T 1o6v_A 184 ISSNKVSD-I--------------------------SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLK 234 (466)
T ss_dssp CCSSCCCC-C--------------------------GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCC
T ss_pred CcCCcCCC-C--------------------------hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcc
Confidence 99888762 1 235566677777777777765544 566777777777777776
Q ss_pred ccCCccccCCCCCCeEEeecccccCCCCCCCCCCCccceeecCCceecccCCcccccccccceeeecCCCccCCCCCccc
Q 040925 261 GRIPSGLGNLTKLANLELSSNSLQGNIPSSLGNCQNLMSFTASQNKLTGALPHQLLSITTLSLYLDLSNNLLNGSLPLQV 340 (833)
Q Consensus 261 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~ll~~L~ls~N~l~~~~~~~~ 340 (833)
+. ..+..+++|+.|++++|++.+..+ +..+++|+.|++++|++++ +|. +..+..+ +.|++++|.+++..+ +
T Consensus 235 ~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~~~-~~~l~~L-~~L~L~~n~l~~~~~--~ 305 (466)
T 1o6v_A 235 DI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISN-ISP-LAGLTAL-TNLELNENQLEDISP--I 305 (466)
T ss_dssp CC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCC-CGG-GTTCTTC-SEEECCSSCCSCCGG--G
T ss_pred cc--hhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCc-ccc-ccCCCcc-CeEEcCCCcccCchh--h
Confidence 43 356677777777777777765544 6677777777777777773 333 5555555 677788887775443 7
Q ss_pred ccCCCcCEEeccCCcCCCCCCccccCCCCCcEEeecCCccccccCccccCCCCCCeEEccCcccCCCchhhhcCCCCCce
Q 040925 341 GHLKNLVILDISSNQFSGVIPGTLSTCVCLEYLDISSNSFHGVIPLSLSFLKSIKELNVSSNNLSGQIPEFLKNLSVLEF 420 (833)
Q Consensus 341 ~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~l~~l~~L~~ 420 (833)
..+++|+.|++++|++++..| +..+++|+.|++++|++++. ..+..+++|+.|++++|++++..| +..+++|+.
T Consensus 306 ~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~ 379 (466)
T 1o6v_A 306 SNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQ 379 (466)
T ss_dssp GGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCE
T ss_pred cCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCE
Confidence 788999999999999987665 78899999999999999865 468889999999999999988777 888999999
Q ss_pred EECccCcCccccC
Q 040925 421 LSLSYNHFEGEVP 433 (833)
Q Consensus 421 L~l~~N~l~~~~~ 433 (833)
|++++|++++.+.
T Consensus 380 L~l~~n~~~~~p~ 392 (466)
T 1o6v_A 380 LGLNDQAWTNAPV 392 (466)
T ss_dssp EECCCEEEECCCB
T ss_pred EeccCCcccCCch
Confidence 9999999988543
No 49
>3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens}
Probab=100.00 E-value=3e-41 Score=359.16 Aligned_cols=272 Identities=24% Similarity=0.337 Sum_probs=215.1
Q ss_pred hcCCccCceeccCcceEEEEEEECCCceEEEEEEeeccCCcchhHHHHHHHHHhhcCCCccceEeeEeecCCCCCCceEe
Q 040925 530 TGEFSSSNMIGQGSFGYVYKGTLGEDEMIVAVKVINLKYKGASRSFVAECEALRNIRHRNLIKIITICSSTDFKGTDFKA 609 (833)
Q Consensus 530 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~~ 609 (833)
.++|++.+.||+|+||.||+|++..+++.||+|++........+.+.+|++++++++||||+++++++.... ..+
T Consensus 9 ~~~~~~~~~lG~G~~g~V~~~~~~~~~~~va~K~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~-----~~~ 83 (310)
T 3s95_A 9 PSDLIHGEVLGKGCFGQAIKVTHRETGEVMVMKELIRFDEETQRTFLKEVKVMRCLEHPNVLKFIGVLYKDK-----RLN 83 (310)
T ss_dssp GGGEEEEEEEECCSSEEEEEEEETTTCCEEEEEEESCCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEETT-----EEE
T ss_pred hhHeeccceecCCCCEEEEEEEECCCCcEEEEEEeccCCHHHHHHHHHHHHHHHhCCCcCcccEEEEEecCC-----eeE
Confidence 357999999999999999999999999999999986555556678999999999999999999999987655 899
Q ss_pred EEEEecCCCChhhhhccCCCccccccCCHHHHHHHHHHHHHHHHHHhhcCCCCceeeCCCCCCeeecCCCcEEEcccccc
Q 040925 610 FVFEYMENGSLKDWLHQSDDQVEVCKLSLIQRVNIAIDVASAMEYLHHHCQPPMVHGDLKPSNVLLDHDMVAHVCDFGLA 689 (833)
Q Consensus 610 lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~gL~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kL~DfG~a 689 (833)
+||||+++|+|.+++..... .+++.+++.++.|++.||+|||+. +|+||||||+||+++.++.+||+|||++
T Consensus 84 lv~e~~~~~~L~~~l~~~~~-----~~~~~~~~~i~~qi~~al~~lH~~---~ivH~dlkp~Nil~~~~~~~kl~Dfg~~ 155 (310)
T 3s95_A 84 FITEYIKGGTLRGIIKSMDS-----QYPWSQRVSFAKDIASGMAYLHSM---NIIHRDLNSHNCLVRENKNVVVADFGLA 155 (310)
T ss_dssp EEEECCTTCBHHHHHHHCCT-----TSCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSTTSEEECTTSCEEECCCTTC
T ss_pred EEEEecCCCcHHHHHHhccC-----CCCHHHHHHHHHHHHHHHHHHHhC---CccCCCCCcCeEEECCCCCEEEeecccc
Confidence 99999999999999987432 689999999999999999999999 9999999999999999999999999999
Q ss_pred cccCcccccccc------cCCCccccccccccccCccccCCCCCCcccccccCCcCCCccccCCccHHHHHHHhCCCccc
Q 040925 690 KFLSDHQLDTAV------KTPSSSIGLKGTVGYVAPEYGMGSEASMTGDIFTGRRPIDAVFNEGHSLHEFAKTALPEKVM 763 (833)
Q Consensus 690 ~~~~~~~~~~~~------~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~s~~~~~~~~~~~g~~l~~~~~~~~p~~~~ 763 (833)
+........... ..........||+.|+|||++.+..++.++|||| +|+++++++++..|+...
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~s----------lG~~l~el~~g~~~~~~~ 225 (310)
T 3s95_A 156 RLMVDEKTQPEGLRSLKKPDRKKRYTVVGNPYWMAPEMINGRSYDEKVDVFS----------FGIVLCEIIGRVNADPDY 225 (310)
T ss_dssp EECC--------------------CCCCSCGGGCCHHHHTTCCCCTHHHHHH----------HHHHHHHHHHTCCSSTTT
T ss_pred eecccccccccccccccccccccccccCCCcceeCHHHhcCCCCCcHHHHHH----------HHHHHHHHhcCCCCCcch
Confidence 876543321110 0011112457999999999999999999999999 888899999888776421
Q ss_pred ccccccchhhhccccchhhhhhhhchHHHHHHHHHHhhccCCCCCCCCCCHHHHHHHHHHhhhhhhc
Q 040925 764 EIVDPSLLMEVMTNNSMIQEDKRVKTEECLNAIIRTGVLCSMESPFERMDMRDVVAKLCHTRETFLG 830 (833)
Q Consensus 764 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~i~~~~~~ 830 (833)
......... ..........+..+++.+.+++.+||+.||++|||++|+++.|+.+.+...+
T Consensus 226 ~~~~~~~~~------~~~~~~~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~~l~~~L~~l~~~~~~ 286 (310)
T 3s95_A 226 LPRTMDFGL------NVRGFLDRYCPPNCPPSFFPITVRCCDLDPEKRPSFVKLEHWLETLRMHLAG 286 (310)
T ss_dssp SCBCTTSSB------CHHHHHHHTCCTTCCTTHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHhh------hhhccccccCCCCCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHHhccC
Confidence 111110000 0000011112334566789999999999999999999999999999876544
No 50
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=2.8e-39 Score=363.97 Aligned_cols=343 Identities=26% Similarity=0.381 Sum_probs=264.3
Q ss_pred CcEEEcCCCcCcccCCccccCCCCCCEEEccCCcccccCCccCCCCCCCCEEEcCCCcccccCCccccCCCCCcEEECCC
Q 040925 1 LQTLAVNDNYLTGQLPDFVGNLSDLEVIRIMGNSLGGKIPTTLGLLRNLVSLNVAENKFSGMFPRSICNISSLELIQLAL 80 (833)
Q Consensus 1 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~ 80 (833)
|++|++++|.++ .+|. +..+++|++|++++|.+++..| |+.+++|++|+|++|.+++..+ |.++++|++|+|++
T Consensus 48 l~~L~l~~~~i~-~l~~-~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~ 121 (466)
T 1o6v_A 48 VTTLQADRLGIK-SIDG-VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFN 121 (466)
T ss_dssp CCEEECCSSCCC-CCTT-GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCS
T ss_pred ccEEecCCCCCc-cCcc-hhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCEEECCC
Confidence 689999999999 4664 8899999999999999976554 9999999999999999996555 99999999999999
Q ss_pred cccccccCchhhcCCCCccEEEccCCcceeeCCccccCCCCCcEEEcccCccccccCcCccCCCcCceEecccccCCCCC
Q 040925 81 NRFSGNLPFDIVVNLPNLKALAIGGNNFFGSIPYSLSNASNLELLDLSVNQFKGNVSIDFSSLKNLLWLNLEQNNLGTGT 160 (833)
Q Consensus 81 N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 160 (833)
|.++ .++. |.++++|++|+|++|.+.+ ++ .+..+++|++|+++ |.+..+. .|..+++|++|++++|.++.++
T Consensus 122 n~l~-~~~~--~~~l~~L~~L~l~~n~l~~-~~-~~~~l~~L~~L~l~-~~~~~~~--~~~~l~~L~~L~l~~n~l~~~~ 193 (466)
T 1o6v_A 122 NQIT-DIDP--LKNLTNLNRLELSSNTISD-IS-ALSGLTSLQQLSFG-NQVTDLK--PLANLTTLERLDISSNKVSDIS 193 (466)
T ss_dssp SCCC-CCGG--GTTCTTCSEEEEEEEEECC-CG-GGTTCTTCSEEEEE-ESCCCCG--GGTTCTTCCEEECCSSCCCCCG
T ss_pred CCCC-CChH--HcCCCCCCEEECCCCccCC-Ch-hhccCCcccEeecC-CcccCch--hhccCCCCCEEECcCCcCCCCh
Confidence 9998 5654 7899999999999999985 33 59999999999997 5566554 3899999999999999997643
Q ss_pred CCCcccccccCCCCCCCEEEccCCcCcccCChhHhhhcccccEEEccCccccccCChhhhcCCCCCeEeccCCcccccCC
Q 040925 161 ATDLDFVTFLTNCSSLKALSLADNQFGGELPHSIANLSSTVINFGIGRNQISGTIPPGIRNLVNLIGFGAEENQLHGTIP 240 (833)
Q Consensus 161 ~~~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 240 (833)
.+..+++|++|++++|++++..| ++.+++|+.|++++|++.+.
T Consensus 194 --------~l~~l~~L~~L~l~~n~l~~~~~---------------------------~~~l~~L~~L~l~~n~l~~~-- 236 (466)
T 1o6v_A 194 --------VLAKLTNLESLIATNNQISDITP---------------------------LGILTNLDELSLNGNQLKDI-- 236 (466)
T ss_dssp --------GGGGCTTCSEEECCSSCCCCCGG---------------------------GGGCTTCCEEECCSSCCCCC--
T ss_pred --------hhccCCCCCEEEecCCccccccc---------------------------ccccCCCCEEECCCCCcccc--
Confidence 37789999999999999884332 34455566666666666543
Q ss_pred ccccCCCCCCEEEcccccCcccCCccccCCCCCCeEEeecccccCCCCCCCCCCCccceeecCCceecccCCcccccccc
Q 040925 241 DAIGELKNLQKLCLFRNFLQGRIPSGLGNLTKLANLELSSNSLQGNIPSSLGNCQNLMSFTASQNKLTGALPHQLLSITT 320 (833)
Q Consensus 241 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~ 320 (833)
..+..+++|++|++++|.+++..+ +..+++|+.|++++|++++..+ +..+++|+.|++++|++++. +. +..+..
T Consensus 237 ~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~-~~-~~~l~~ 310 (466)
T 1o6v_A 237 GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDI-SP-ISNLKN 310 (466)
T ss_dssp GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCC-GG-GGGCTT
T ss_pred hhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCc-hh-hcCCCC
Confidence 345566666666666666664433 5666666666666666664433 56666666666666666632 22 444444
Q ss_pred cceeeecCCCccCCCCCcccccCCCcCEEeccCCcCCCCCCccccCCCCCcEEeecCCccccccCccccCCCCCCeEEcc
Q 040925 321 LSLYLDLSNNLLNGSLPLQVGHLKNLVILDISSNQFSGVIPGTLSTCVCLEYLDISSNSFHGVIPLSLSFLKSIKELNVS 400 (833)
Q Consensus 321 ll~~L~ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~ 400 (833)
+ +.|++++|.+++..| +..+++|++|++++|++++. ..+..+++|+.|++++|++++..| +..+++|+.|+++
T Consensus 311 L-~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~ 383 (466)
T 1o6v_A 311 L-TYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLN 383 (466)
T ss_dssp C-SEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECC
T ss_pred C-CEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEecc
Confidence 4 567777777775544 67888899999999988865 468888899999999999887766 7888899999999
Q ss_pred CcccCCC
Q 040925 401 SNNLSGQ 407 (833)
Q Consensus 401 ~N~l~~~ 407 (833)
+|++++.
T Consensus 384 ~n~~~~~ 390 (466)
T 1o6v_A 384 DQAWTNA 390 (466)
T ss_dssp CEEEECC
T ss_pred CCcccCC
Confidence 9988863
No 51
>3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} SCOP: d.144.1.7 PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A*
Probab=100.00 E-value=5.9e-41 Score=353.86 Aligned_cols=252 Identities=21% Similarity=0.273 Sum_probs=208.0
Q ss_pred hcCCccCceeccCcceEEEEEEECCCceEEEEEEeeccCCcchhHHHHHHHHHhhcCCCccceEeeEeecCCCCCCceEe
Q 040925 530 TGEFSSSNMIGQGSFGYVYKGTLGEDEMIVAVKVINLKYKGASRSFVAECEALRNIRHRNLIKIITICSSTDFKGTDFKA 609 (833)
Q Consensus 530 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~~ 609 (833)
.++|++.+.||+|+||.||+|.+..+++.||||++........+.+.+|+.++++++||||+++++++...+ ..+
T Consensus 19 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~-----~~~ 93 (297)
T 3fxz_A 19 KKKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRENKNPNIVNYLDSYLVGD-----ELW 93 (297)
T ss_dssp GGTBCCCEEEEEETTEEEEEEEBTTTCCEEEEEEEEGGGCSCHHHHHHHHHHHHHCCCTTBCCEEEEEEETT-----EEE
T ss_pred hhceeeeeeeccCCCeEEEEEEECCCCcEEEEEEeecccccHHHHHHHHHHHHhcCCCCCCCeEeEEEEECC-----EEE
Confidence 468999999999999999999999899999999998666666778999999999999999999999977655 899
Q ss_pred EEEEecCCCChhhhhccCCCccccccCCHHHHHHHHHHHHHHHHHHhhcCCCCceeeCCCCCCeeecCCCcEEEcccccc
Q 040925 610 FVFEYMENGSLKDWLHQSDDQVEVCKLSLIQRVNIAIDVASAMEYLHHHCQPPMVHGDLKPSNVLLDHDMVAHVCDFGLA 689 (833)
Q Consensus 610 lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~gL~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kL~DfG~a 689 (833)
+||||+++|+|.+++... .+++.+++.++.|++.||+|||+. ||+||||||+||+++.++.+||+|||++
T Consensus 94 lv~e~~~~~~L~~~~~~~-------~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~Dlkp~Nil~~~~~~~kl~Dfg~~ 163 (297)
T 3fxz_A 94 VVMEYLAGGSLTDVVTET-------CMDEGQIAAVCRECLQALEFLHSN---QVIHRDIKSDNILLGMDGSVKLTDFGFC 163 (297)
T ss_dssp EEEECCTTCBHHHHHHHS-------CCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTCCEEECCCTTC
T ss_pred EEEECCCCCCHHHHHhhc-------CCCHHHHHHHHHHHHHHHHHHHhC---CceeCCCCHHHEEECCCCCEEEeeCCCc
Confidence 999999999999999764 589999999999999999999999 9999999999999999999999999999
Q ss_pred cccCcccccccccCCCccccccccccccCccccCCCCCCcccccccCCcCCCccccCCccHHHHHHHhCCCccccccccc
Q 040925 690 KFLSDHQLDTAVKTPSSSIGLKGTVGYVAPEYGMGSEASMTGDIFTGRRPIDAVFNEGHSLHEFAKTALPEKVMEIVDPS 769 (833)
Q Consensus 690 ~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~s~~~~~~~~~~~g~~l~~~~~~~~p~~~~~~~~~~ 769 (833)
........ ......||+.|+|||++.+..++.++|||| .|+++++++++..|+......+..
T Consensus 164 ~~~~~~~~--------~~~~~~gt~~y~aPE~~~~~~~~~~~Diws----------lG~il~ell~g~~pf~~~~~~~~~ 225 (297)
T 3fxz_A 164 AQITPEQS--------KRSTMVGTPYWMAPEVVTRKAYGPKVDIWS----------LGIMAIEMIEGEPPYLNENPLRAL 225 (297)
T ss_dssp EECCSTTC--------CBCCCCSCGGGCCHHHHHCSCBCTHHHHHH----------HHHHHHHHHHSSCTTTTSCHHHHH
T ss_pred eecCCccc--------ccCCccCCcCccChhhhcCCCCCcHHHHHH----------HHHHHHHHHhCCCCCCCCCHHHHH
Confidence 86654321 122356999999999999999999999999 888999999999887532211111
Q ss_pred chhhhccccchhhhhhhhchHHHHHHHHHHhhccCCCCCCCCCCHHHHHHH
Q 040925 770 LLMEVMTNNSMIQEDKRVKTEECLNAIIRTGVLCSMESPFERMDMRDVVAK 820 (833)
Q Consensus 770 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~ 820 (833)
.. ...... .....+..+++.+.+++.+||+.||++|||++|+++.
T Consensus 226 ~~--~~~~~~----~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~ell~h 270 (297)
T 3fxz_A 226 YL--IATNGT----PELQNPEKLSAIFRDFLNRCLEMDVEKRGSAKELLQH 270 (297)
T ss_dssp HH--HHHHCS----CCCSCGGGSCHHHHHHHHHHSCSSTTTSCCHHHHTTC
T ss_pred HH--HHhCCC----CCCCCccccCHHHHHHHHHHccCChhHCcCHHHHhhC
Confidence 00 000000 0011123456678899999999999999999999864
No 52
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=2e-39 Score=366.92 Aligned_cols=347 Identities=18% Similarity=0.176 Sum_probs=203.2
Q ss_pred EEEcCCCcCcccCCccccCCCCCCEEEccCCcccccCCccCCCCCCCCEEEcCCCcccccCCccccCCCCCcEEECCCcc
Q 040925 3 TLAVNDNYLTGQLPDFVGNLSDLEVIRIMGNSLGGKIPTTLGLLRNLVSLNVAENKFSGMFPRSICNISSLELIQLALNR 82 (833)
Q Consensus 3 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~ 82 (833)
.++.++++++ .+|..+. ++++.|+|++|+|++..|..|..+++|++|+|++|.|+++.|.+|.++++|++|+|++|+
T Consensus 15 ~v~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~ 91 (477)
T 2id5_A 15 AVLCHRKRFV-AVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR 91 (477)
T ss_dssp EEECCSCCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred EEEeCCCCcC-cCCCCCC--CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCc
Confidence 5666677776 5565543 467777777777766666777777777777777777776667777777777777777777
Q ss_pred cccccCchhhcCCCCccEEEccCCcceeeCCccccCCCCCcEEEcccCccccccCcCccCCCcCceEecccccCCCCCCC
Q 040925 83 FSGNLPFDIVVNLPNLKALAIGGNNFFGSIPYSLSNASNLELLDLSVNQFKGNVSIDFSSLKNLLWLNLEQNNLGTGTAT 162 (833)
Q Consensus 83 l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 162 (833)
++ .+|..+|.++++|++|+|++|.+++..|..|.++++|++|+|++|+++.+.+..|.++++|++|+|++|+++.++.
T Consensus 92 l~-~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~- 169 (477)
T 2id5_A 92 LK-LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPT- 169 (477)
T ss_dssp CC-SCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCH-
T ss_pred CC-ccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccCh-
Confidence 76 6666666677777777777777766666667777777777777777666666666666666666655555543321
Q ss_pred CcccccccCCCCCCCEEEccCCcCcccCChhHhhhcccccEEEccCccccccCChhhhcCCCCCeEeccCCcccccCCcc
Q 040925 163 DLDFVTFLTNCSSLKALSLADNQFGGELPHSIANLSSTVINFGIGRNQISGTIPPGIRNLVNLIGFGAEENQLHGTIPDA 242 (833)
Q Consensus 163 ~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 242 (833)
..|.++++|+.|++++|.+.++.+..
T Consensus 170 ------------------------------------------------------~~l~~l~~L~~L~l~~n~i~~~~~~~ 195 (477)
T 2id5_A 170 ------------------------------------------------------EALSHLHGLIVLRLRHLNINAIRDYS 195 (477)
T ss_dssp ------------------------------------------------------HHHTTCTTCCEEEEESCCCCEECTTC
T ss_pred ------------------------------------------------------hHhcccCCCcEEeCCCCcCcEeChhh
Confidence 22333444444444444444444445
Q ss_pred ccCCCCCCEEEcccccCcccCCccccCCCCCCeEEeecccccCCCCCCCCCCCccceeecCCceecccCCcccccccccc
Q 040925 243 IGELKNLQKLCLFRNFLQGRIPSGLGNLTKLANLELSSNSLQGNIPSSLGNCQNLMSFTASQNKLTGALPHQLLSITTLS 322 (833)
Q Consensus 243 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~ll 322 (833)
|..+++|++|++++|.+.+.+|..+....+|+.|+|++|+++...+..|..+++|+.|++++|+++
T Consensus 196 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-------------- 261 (477)
T 2id5_A 196 FKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPIS-------------- 261 (477)
T ss_dssp SCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCC--------------
T ss_pred cccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCC--------------
Confidence 555555555555555554444444444445666666666665433344555555555555444444
Q ss_pred eeeecCCCccCCCCCcccccCCCcCEEeccCCcCCCCCCccccCCCCCcEEeecCCccccccCccccCCCCCCeEEccCc
Q 040925 323 LYLDLSNNLLNGSLPLQVGHLKNLVILDISSNQFSGVIPGTLSTCVCLEYLDISSNSFHGVIPLSLSFLKSIKELNVSSN 402 (833)
Q Consensus 323 ~~L~ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N 402 (833)
+..+..|..+++|+.|+|++|+++++.|.+|..+++|+.|+|++|+|+++.+..|..+++|+.|+|++|
T Consensus 262 -----------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 330 (477)
T 2id5_A 262 -----------TIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSN 330 (477)
T ss_dssp -----------EECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSS
T ss_pred -----------ccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCC
Confidence 223334445555566666666665555555666666666666666666555555556666666666666
Q ss_pred ccCCCchhhhcCCCCCceEECccCcCccccCC
Q 040925 403 NLSGQIPEFLKNLSVLEFLSLSYNHFEGEVPT 434 (833)
Q Consensus 403 ~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~ 434 (833)
++.+..+. ..-...+..+++.++...|..|.
T Consensus 331 ~l~c~c~~-~~~~~~~~~~~~~~~~~~C~~p~ 361 (477)
T 2id5_A 331 PLACDCRL-LWVFRRRWRLNFNRQQPTCATPE 361 (477)
T ss_dssp CEECSGGG-HHHHTTTTSSCCTTCCCBEEESG
T ss_pred CccCccch-HhHHhhhhccccCccCceeCCch
Confidence 66533221 11112233345566666665553
No 53
>3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3ulz_A* 3tl8_A*
Probab=100.00 E-value=1.7e-40 Score=356.20 Aligned_cols=283 Identities=32% Similarity=0.537 Sum_probs=223.7
Q ss_pred CCCccchHHHHHHhcCCccCceeccCcceEEEEEEECCCceEEEEEEeeccCC-cchhHHHHHHHHHhhcCCCccceEee
Q 040925 517 QFPMVSYAELSKATGEFSSSNMIGQGSFGYVYKGTLGEDEMIVAVKVINLKYK-GASRSFVAECEALRNIRHRNLIKIIT 595 (833)
Q Consensus 517 ~~~~~~~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~-~~~~~~~~E~~~l~~l~h~niv~~~~ 595 (833)
....++..++....++|++.+.||+|+||.||+|+.. +++.||||+++.... .....+.+|++++++++||||+++++
T Consensus 16 ~~~~~~~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~ 94 (326)
T 3uim_A 16 QLKRFSLRELQVASDNFSNKNILGRGGFGKVYKGRLA-DGTLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRG 94 (326)
T ss_dssp CCEECCTHHHHTTTTSSCSTTEEECCSSSEEEEECCS-SSCCEEEEECCC-----CCCHHHHHHHGGGTCCCTTBCCCCE
T ss_pred ccceecHHHHHHHhhccccceeEecCCCcEEEEEEec-CCCEEEEEEeccccCchHHHHHHHHHHHHHhccCCCccceEE
Confidence 4567899999999999999999999999999999865 688999999975432 23347899999999999999999999
Q ss_pred EeecCCCCCCceEeEEEEecCCCChhhhhccCCCccccccCCHHHHHHHHHHHHHHHHHHhhcCCCCceeeCCCCCCeee
Q 040925 596 ICSSTDFKGTDFKAFVFEYMENGSLKDWLHQSDDQVEVCKLSLIQRVNIAIDVASAMEYLHHHCQPPMVHGDLKPSNVLL 675 (833)
Q Consensus 596 ~~~~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~gL~~LH~~~~~~ivH~Dlkp~NIll 675 (833)
++.... ..++||||+++|+|.+++...... ...+++..++.++.|++.||+|||+.+.++|+||||||+||++
T Consensus 95 ~~~~~~-----~~~lv~e~~~~~~L~~~l~~~~~~--~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~ivH~Dlkp~Nil~ 167 (326)
T 3uim_A 95 FCMTPT-----ERLLVYPYMANGSVASCLRERPES--QPPLDWPKRQRIALGSARGLAYLHDHCDPKIIHRDVKAANILL 167 (326)
T ss_dssp EECCSS-----CCEEEEECCTTCBHHHHHHCCSTT--CCCCCHHHHHHHHHHHHHHHHHHHHSSSSCEECCCCSGGGEEE
T ss_pred EEecCC-----ceEEEEEeccCCCHHHHHHhcccc--CCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeCCCchhhEEE
Confidence 976554 789999999999999999876532 1258999999999999999999999877799999999999999
Q ss_pred cCCCcEEEcccccccccCcccccccccCCCccccccccccccCccccCCCCCCcccccccCCcCCCccccCCccHHHHHH
Q 040925 676 DHDMVAHVCDFGLAKFLSDHQLDTAVKTPSSSIGLKGTVGYVAPEYGMGSEASMTGDIFTGRRPIDAVFNEGHSLHEFAK 755 (833)
Q Consensus 676 ~~~~~~kL~DfG~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~s~~~~~~~~~~~g~~l~~~~~ 755 (833)
+.++.+||+|||+++....... .......||+.|+|||++.+..++.++|||| .|++++++++
T Consensus 168 ~~~~~~kl~Dfg~~~~~~~~~~-------~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~s----------lG~il~~l~~ 230 (326)
T 3uim_A 168 DEEFEAVVGDFGLAKLMDYKDT-------HVTTAVRGTIGHIAPEYLSTGKSSEKTDVFG----------YGVMLLELIT 230 (326)
T ss_dssp CTTCCEEECCCSSCEECCSSSS-------CEECCCCSCGGGCCHHHHHHSEECHHHHHHH----------HHHHHHHHHH
T ss_pred CCCCCEEeccCccccccCcccc-------cccccccCCcCccCHHHhccCCCCccccchh----------HHHHHHHHHh
Confidence 9999999999999986643221 1122345999999999998888999999999 8888999999
Q ss_pred HhCCCccccccccc--chhhhc----cc----cchhhhhhhhchHHHHHHHHHHhhccCCCCCCCCCCHHHHHHHHHHh
Q 040925 756 TALPEKVMEIVDPS--LLMEVM----TN----NSMIQEDKRVKTEECLNAIIRTGVLCSMESPFERMDMRDVVAKLCHT 824 (833)
Q Consensus 756 ~~~p~~~~~~~~~~--~~~~~~----~~----~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~i 824 (833)
+..|+......+.. ...+.. .. .............+.++.+.+++.+||+.||++|||++|++++|+..
T Consensus 231 g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~ell~~L~~~ 309 (326)
T 3uim_A 231 GQRAFDLARLANDDDVMLLDWVKGLLKEKKLEALVDVDLQGNYKDEEVEQLIQVALLCTQSSPMERPKMSEVVRMLEGD 309 (326)
T ss_dssp CCCSBCHHHHTTTSCSBHHHHHTTTTSSCCSTTSSCTTCTTSCCHHHHHHHHHHHHHHTCSCGGGSCCHHHHHHHHHTS
T ss_pred CCCcccccccccccchhHHHHHHHHhhchhhhhhcChhhccccCHHHHHHHHHHHHHHhCcCCccCCCHHHHHHHhcCc
Confidence 98887522111100 000000 00 00001111223466788999999999999999999999999999864
No 54
>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A*
Probab=100.00 E-value=2e-40 Score=354.47 Aligned_cols=279 Identities=31% Similarity=0.421 Sum_probs=219.3
Q ss_pred cchHHHHHHhcCCccCceeccCcceEEEEEEECCCceEEEEEEeeccCCcchhHHHHHHHHHhhcCCCccceEeeEeecC
Q 040925 521 VSYAELSKATGEFSSSNMIGQGSFGYVYKGTLGEDEMIVAVKVINLKYKGASRSFVAECEALRNIRHRNLIKIITICSST 600 (833)
Q Consensus 521 ~~~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~ 600 (833)
++..++...+++|++.+.||+|+||.||+|++. +++.||||++........+.+.+|++++++++||||+++++++...
T Consensus 29 ~~~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~ 107 (321)
T 2qkw_B 29 VPLVDLEEATNNFDHKFLIGHGVFGKVYKGVLR-DGAKVALKRRTPESSQGIEEFETEIETLSFCRHPHLVSLIGFCDER 107 (321)
T ss_dssp -CCSCCCCCCCCCSCCCCSCBCSSSEEEEEECT-TCCEEEEEECCSCCSSHHHHHHHHHHGGGSCCCTTBCCEEEECCCT
T ss_pred ecHHHHHHHHhccCccceeecCCCeeEEEEEEC-CCCEEEEEEecccChHHHHHHHHHHHHHHhCCCCCEeeEEEEEcCC
Confidence 344455567889999999999999999999975 6889999998766666677899999999999999999999997554
Q ss_pred CCCCCceEeEEEEecCCCChhhhhccCCCccccccCCHHHHHHHHHHHHHHHHHHhhcCCCCceeeCCCCCCeeecCCCc
Q 040925 601 DFKGTDFKAFVFEYMENGSLKDWLHQSDDQVEVCKLSLIQRVNIAIDVASAMEYLHHHCQPPMVHGDLKPSNVLLDHDMV 680 (833)
Q Consensus 601 ~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~gL~~LH~~~~~~ivH~Dlkp~NIll~~~~~ 680 (833)
+ ..++||||+++|+|.+++...... ...+++.+++.++.|++.||+|||+. +|+||||||+||+++.++.
T Consensus 108 ~-----~~~lv~e~~~~~~L~~~l~~~~~~--~~~~~~~~~~~i~~~i~~~l~~lH~~---~ivH~dlkp~Nil~~~~~~ 177 (321)
T 2qkw_B 108 N-----EMILIYKYMENGNLKRHLYGSDLP--TMSMSWEQRLEICIGAARGLHYLHTR---AIIHRDVKSINILLDENFV 177 (321)
T ss_dssp T-----CCEEEEECCTTCBTGGGSSSSCCC--SCCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCSTTEEECTTCC
T ss_pred C-----eEEEEEEcCCCCcHHHHHhccCCC--ccccCHHHHHHHHHHHHHHHHHhcCC---CeecCCCCHHHEEECCCCC
Confidence 3 789999999999999999765422 12589999999999999999999999 9999999999999999999
Q ss_pred EEEcccccccccCcccccccccCCCccccccccccccCccccCCCCCCcccccccCCcCCCccccCCccHHHHHHHhCCC
Q 040925 681 AHVCDFGLAKFLSDHQLDTAVKTPSSSIGLKGTVGYVAPEYGMGSEASMTGDIFTGRRPIDAVFNEGHSLHEFAKTALPE 760 (833)
Q Consensus 681 ~kL~DfG~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~s~~~~~~~~~~~g~~l~~~~~~~~p~ 760 (833)
+||+|||+++....... ........||+.|+|||++.+..++.++|||| +|+++++++++..|+
T Consensus 178 ~kl~Dfg~~~~~~~~~~------~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~s----------lG~il~ell~g~~p~ 241 (321)
T 2qkw_B 178 PKITDFGISKKGTELDQ------THLSTVVKGTLGYIDPEYFIKGRLTEKSDVYS----------FGVVLFEVLCARSAI 241 (321)
T ss_dssp EEECCCTTCEECSSSSC------CCCBCCCEEETTTCCHHHHHHCBCCTHHHHHH----------HHHHHHHHHHCCTTC
T ss_pred EEEeecccccccccccc------cccccccCCCccccCHHHhcCCCCCcccchHh----------HHHHHHHHHhCCCcc
Confidence 99999999986543211 11122346899999999998889999999999 888899999998876
Q ss_pred cccccccccchh----hhcc----ccchhhhhhhhchHHHHHHHHHHhhccCCCCCCCCCCHHHHHHHHHHhhh
Q 040925 761 KVMEIVDPSLLM----EVMT----NNSMIQEDKRVKTEECLNAIIRTGVLCSMESPFERMDMRDVVAKLCHTRE 826 (833)
Q Consensus 761 ~~~~~~~~~~~~----~~~~----~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~i~~ 826 (833)
......+..... .... ..............+++..+.+++.+||+.||++|||++|+++.|+.+.+
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~~l~ 315 (321)
T 2qkw_B 242 VQSLPREMVNLAEWAVESHNNGQLEQIVDPNLADKIRPESLRKFGDTAVKCLALSSEDRPSMGDVLWKLEYALR 315 (321)
T ss_dssp SCSSSSSCCCHHHHTHHHHTTTCCCSSSSSSCTTCSCHHHHHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred cccCcHHHHHHHHHhhhccccccHHHhcChhhccccCHHHHHHHHHHHHHHcCCCcccCcCHHHHHHHHHHHhh
Confidence 521111100000 0000 00000111122346678899999999999999999999999999998875
No 55
>3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP binding, transferase-transfera inhibitor complex; HET: 046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 4e4m_A* 4f08_A* 4f09_A* 3q32_A* 3rvg_A* 4hge_A* 3tjc_A* 3tjd_A* 4bbe_A* 4bbf_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A* 3e63_A* 2xa4_A* 3iok_A* ...
Probab=100.00 E-value=4.3e-41 Score=355.30 Aligned_cols=274 Identities=22% Similarity=0.328 Sum_probs=207.8
Q ss_pred hcCCccCceeccCcceEEEEEE----ECCCceEEEEEEeeccCCcchhHHHHHHHHHhhcCCCccceEeeEeecCCCCCC
Q 040925 530 TGEFSSSNMIGQGSFGYVYKGT----LGEDEMIVAVKVINLKYKGASRSFVAECEALRNIRHRNLIKIITICSSTDFKGT 605 (833)
Q Consensus 530 ~~~y~~~~~lg~G~~g~Vy~~~----~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~ 605 (833)
.++|++.+.||+|+||.||+|+ ...+++.||||+++.......+.+.+|++++++++||||+++++++...+ .
T Consensus 9 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~---~ 85 (295)
T 3ugc_A 9 ERHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAG---R 85 (295)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEECTTCSSCCEEEEEEEESCCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECHHH---H
T ss_pred HHHhhhhheeeccCCEEEEEEEEecccCCCCcEEEEEEcccCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEecCC---C
Confidence 3679999999999999999998 45689999999997655555678999999999999999999999975432 2
Q ss_pred ceEeEEEEecCCCChhhhhccCCCccccccCCHHHHHHHHHHHHHHHHHHhhcCCCCceeeCCCCCCeeecCCCcEEEcc
Q 040925 606 DFKAFVFEYMENGSLKDWLHQSDDQVEVCKLSLIQRVNIAIDVASAMEYLHHHCQPPMVHGDLKPSNVLLDHDMVAHVCD 685 (833)
Q Consensus 606 ~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~gL~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kL~D 685 (833)
...++||||+++|+|.+++..... .+++.+++.++.|++.||+|||+. +|+||||||+||+++.++.+||+|
T Consensus 86 ~~~~lv~e~~~~~~L~~~l~~~~~-----~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~Dikp~Nil~~~~~~~kl~D 157 (295)
T 3ugc_A 86 RNLKLIMEYLPYGSLRDYLQKHKE-----RIDHIKLLQYTSQICKGMEYLGTK---RYIHRDLATRNILVENENRVKIGD 157 (295)
T ss_dssp TSCEEEEECCTTCBHHHHHHHCGG-----GCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEEEETTEEEECC
T ss_pred CceEEEEEeCCCCCHHHHHHhccc-----ccCHHHHHHHHHHHHHHHHHHhcC---CcccCCCCHhhEEEcCCCeEEEcc
Confidence 357899999999999999987542 589999999999999999999999 999999999999999999999999
Q ss_pred cccccccCcccccccccCCCccccccccccccCccccCCCCCCcccccccCCcCCCccccCCccHHHHHHHhCCCccccc
Q 040925 686 FGLAKFLSDHQLDTAVKTPSSSIGLKGTVGYVAPEYGMGSEASMTGDIFTGRRPIDAVFNEGHSLHEFAKTALPEKVMEI 765 (833)
Q Consensus 686 fG~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~s~~~~~~~~~~~g~~l~~~~~~~~p~~~~~~ 765 (833)
||+++......... .......||+.|+|||++.+..++.++|||| +|+++++++++..|+.....
T Consensus 158 fg~~~~~~~~~~~~-----~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~s----------lG~~l~~l~~g~~~~~~~~~ 222 (295)
T 3ugc_A 158 FGLTKVLPQDKEFF-----KVKEPGESPIFWYAPESLTESKFSVASDVWS----------FGVVLYELFTYIEKSKSPPA 222 (295)
T ss_dssp CCSCC------------------CTTCGGGGCCHHHHHHCCCCHHHHHHH----------HHHHHHHHHHTTCTTCSHHH
T ss_pred CcccccccCCccee-----eeccCCCCccceeCcHHhcCCCCChHHHHHH----------HHHHHHHHHhcccccCCChH
Confidence 99998765432111 1112235788899999999999999999999 78888888888776542210
Q ss_pred ccccchhhhccc--------cchhhhhhhhchHHHHHHHHHHhhccCCCCCCCCCCHHHHHHHHHHhhhhhh
Q 040925 766 VDPSLLMEVMTN--------NSMIQEDKRVKTEECLNAIIRTGVLCSMESPFERMDMRDVVAKLCHTRETFL 829 (833)
Q Consensus 766 ~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~i~~~~~ 829 (833)
............ ...........+..+++.+.+++.+||+.||++|||++|+++.|+++.+...
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~el~~~L~~l~~~l~ 294 (295)
T 3ugc_A 223 EFMRMIGNDKQGQMIVFHLIELLKNNGRLPRPDGCPDEIYMIMTECWNNNVNQRPSFRDLALRVDQIRDNMA 294 (295)
T ss_dssp HHHHHHCTTCCTHHHHHHHHHHHHTTCCCCCCTTCCHHHHHHHHHHSCSSGGGSCCHHHHHHHHHHHHHC--
T ss_pred HHHhhhcCccccchhHHHHHHHHhccCcCCCCcCcCHHHHHHHHHHcCCChhhCCCHHHHHHHHHHHHHhcc
Confidence 000000000000 0000000112233456789999999999999999999999999999987654
No 56
>3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3, ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A* 1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A
Probab=100.00 E-value=1.7e-40 Score=354.41 Aligned_cols=250 Identities=21% Similarity=0.287 Sum_probs=204.6
Q ss_pred HhcCCccCceeccCcceEEEEEEECCCceEEEEEEeeccCC--cchhHHHHHHHHHhhcCCCccceEeeEeecCCCCCCc
Q 040925 529 ATGEFSSSNMIGQGSFGYVYKGTLGEDEMIVAVKVINLKYK--GASRSFVAECEALRNIRHRNLIKIITICSSTDFKGTD 606 (833)
Q Consensus 529 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~--~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~ 606 (833)
..++|++.+.||+|+||.||+|++..+|+.||||++..... ...+.+.+|+++++.++||||+++++++....
T Consensus 13 ~~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~----- 87 (328)
T 3fe3_A 13 HIGNYRLLKTIGKGNFAKVKLARHILTGREVAIKIIDKTQLNPTSLQKLFREVRIMKILNHPNIVKLFEVIETEK----- 87 (328)
T ss_dssp EETTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEECSS-----
T ss_pred ccCCEEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEhhcCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECC-----
Confidence 45689999999999999999999998999999999975422 23467889999999999999999999976554
Q ss_pred eEeEEEEecCCCChhhhhccCCCccccccCCHHHHHHHHHHHHHHHHHHhhcCCCCceeeCCCCCCeeecCCCcEEEccc
Q 040925 607 FKAFVFEYMENGSLKDWLHQSDDQVEVCKLSLIQRVNIAIDVASAMEYLHHHCQPPMVHGDLKPSNVLLDHDMVAHVCDF 686 (833)
Q Consensus 607 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~gL~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kL~Df 686 (833)
..++||||+++|+|.+++...+ .+++.+++.++.|++.||+|||+. +|+||||||+||+++.++.+||+||
T Consensus 88 ~~~lv~e~~~~~~L~~~l~~~~------~l~~~~~~~~~~qi~~al~~lH~~---~ivHrDlkp~NIll~~~~~~kl~DF 158 (328)
T 3fe3_A 88 TLYLIMEYASGGEVFDYLVAHG------RMKEKEARSKFRQIVSAVQYCHQK---RIVHRDLKAENLLLDADMNIKIADF 158 (328)
T ss_dssp EEEEEECCCTTCBHHHHHHHHC------CCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTSCEEECST
T ss_pred EEEEEEECCCCCcHHHHHHHcC------CCCHHHHHHHHHHHHHHHHHHHHC---CEeccCCCHHHEEEcCCCCEEEeec
Confidence 8999999999999999997654 689999999999999999999999 9999999999999999999999999
Q ss_pred ccccccCcccccccccCCCccccccccccccCccccCCCCCC-cccccccCCcCCCccccCCccHHHHHHHhCCCccccc
Q 040925 687 GLAKFLSDHQLDTAVKTPSSSIGLKGTVGYVAPEYGMGSEAS-MTGDIFTGRRPIDAVFNEGHSLHEFAKTALPEKVMEI 765 (833)
Q Consensus 687 G~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~-~~~Di~s~~~~~~~~~~~g~~l~~~~~~~~p~~~~~~ 765 (833)
|++....... .....+||+.|+|||++.+..++ .++|||| .|+++++++++..|+.....
T Consensus 159 G~a~~~~~~~---------~~~~~~gt~~y~aPE~~~~~~~~~~~~Diws----------lG~il~ell~g~~pf~~~~~ 219 (328)
T 3fe3_A 159 GFSNEFTVGG---------KLDAFCGAPPYAAPELFQGKKYDGPEVDVWS----------LGVILYTLVSGSLPFDGQNL 219 (328)
T ss_dssp TCCGGGSSSC---------GGGTTSSSGGGCCHHHHHTCCCCSHHHHHHH----------HHHHHHHHHHSSCSSCCSSH
T ss_pred cCceecCCCC---------ccccccCCcceeCcccccCCCcCCchhhhhh----------hHHHHHHHHhCCCCCCCCCH
Confidence 9997654322 12235799999999999888765 7899999 88899999999999763221
Q ss_pred ccccchhhhccccchhhhhhhhchHHHHHHHHHHhhccCCCCCCCCCCHHHHHHH
Q 040925 766 VDPSLLMEVMTNNSMIQEDKRVKTEECLNAIIRTGVLCSMESPFERMDMRDVVAK 820 (833)
Q Consensus 766 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~ 820 (833)
. ........... ..+...++.+.+++.+||..||++|||++|+++.
T Consensus 220 ~--~~~~~i~~~~~-------~~p~~~s~~~~~li~~~L~~dP~~R~t~~eil~h 265 (328)
T 3fe3_A 220 K--ELRERVLRGKY-------RIPFYMSTDCENLLKRFLVLNPIKRGTLEQIMKD 265 (328)
T ss_dssp H--HHHHHHHHCCC-------CCCTTSCHHHHHHHHHHCCSSTTTSCCHHHHTTC
T ss_pred H--HHHHHHHhCCC-------CCCCCCCHHHHHHHHHHCCCChhHCcCHHHHhcC
Confidence 1 11111111111 1112235667899999999999999999999864
No 57
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=3.5e-39 Score=359.86 Aligned_cols=357 Identities=18% Similarity=0.193 Sum_probs=273.0
Q ss_pred cCcccCCccccCCCCCCEEEccCCcccccCCccCCCCCCCCEEEcCCCcccccCCccccCCCCCcEEECCCcccccccCc
Q 040925 10 YLTGQLPDFVGNLSDLEVIRIMGNSLGGKIPTTLGLLRNLVSLNVAENKFSGMFPRSICNISSLELIQLALNRFSGNLPF 89 (833)
Q Consensus 10 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 89 (833)
...+..+..++++++|++|++++|.+++. | .|+.+++|++|+|++|+++++ | ++++++|++|+|++|+++ .+|
T Consensus 29 ~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~-~~~- 101 (457)
T 3bz5_A 29 EMQATDTISEEQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLT-NLD- 101 (457)
T ss_dssp TCCTTSEEEHHHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCS-CCC-
T ss_pred CcCcccccChhHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCc-eee-
Confidence 33445566788889999999999999664 5 688899999999999999864 3 889999999999999998 555
Q ss_pred hhhcCCCCccEEEccCCcceeeCCccccCCCCCcEEEcccCccccccCcCccCCCcCceEeccccc-CCCCCCCCccccc
Q 040925 90 DIVVNLPNLKALAIGGNNFFGSIPYSLSNASNLELLDLSVNQFKGNVSIDFSSLKNLLWLNLEQNN-LGTGTATDLDFVT 168 (833)
Q Consensus 90 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~~~ 168 (833)
|.++++|++|+|++|++++. | ++.+++|++|++++|+++++ .+..+++|++|++++|. +..+
T Consensus 102 --~~~l~~L~~L~L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~--------- 164 (457)
T 3bz5_A 102 --VTPLTKLTYLNCDTNKLTKL-D--VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL--------- 164 (457)
T ss_dssp --CTTCTTCCEEECCSSCCSCC-C--CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC---------
T ss_pred --cCCCCcCCEEECCCCcCCee-c--CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc---------
Confidence 67899999999999999863 4 88899999999999999876 37888999999999994 4332
Q ss_pred ccCCCCCCCEEEccCCcCcccCChhHhhhcccccEEEccCccccccCChhhhcCCCCCeEeccCCcccccCCccccCCCC
Q 040925 169 FLTNCSSLKALSLADNQFGGELPHSIANLSSTVINFGIGRNQISGTIPPGIRNLVNLIGFGAEENQLHGTIPDAIGELKN 248 (833)
Q Consensus 169 ~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 248 (833)
.+..+++|++|++++|++++ +| +..+ ..++.|++++|++++. .+..+++|+.|++++|++++ +| ++.+++
T Consensus 165 ~~~~l~~L~~L~ls~n~l~~-l~--l~~l-~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~ 234 (457)
T 3bz5_A 165 DVTPQTQLTTLDCSFNKITE-LD--VSQN-KLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQ 234 (457)
T ss_dssp CCTTCTTCCEEECCSSCCCC-CC--CTTC-TTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTT
T ss_pred ccccCCcCCEEECCCCccce-ec--cccC-CCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCC
Confidence 25678899999999999985 55 4444 3478888888888865 37888889999999998887 44 778888
Q ss_pred CCEEEcccccCcccCCccccCCC-------CCCeEEeecccccCCCCCCCCCCCccceeecCCceecccCCccccccccc
Q 040925 249 LQKLCLFRNFLQGRIPSGLGNLT-------KLANLELSSNSLQGNIPSSLGNCQNLMSFTASQNKLTGALPHQLLSITTL 321 (833)
Q Consensus 249 L~~L~L~~N~l~~~~~~~~~~l~-------~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~l 321 (833)
|+.|++++|.+++..+..+.++. +|+.|++++|.+.+.+| ++.+++|+.|++++|...+.+|... ..+
T Consensus 235 L~~L~l~~N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~---~~L 309 (457)
T 3bz5_A 235 LTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQA---AGI 309 (457)
T ss_dssp CSEEECCSSCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTT---CCC
T ss_pred CCEEEeeCCcCCCcCHHHCCCCCEEeccCCCCCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccCC---Ccc
Confidence 99999999988876544444333 44455555555444444 4566777777777777665544321 111
Q ss_pred ceeeecCCCccCCCCCcccccCCCcCEEeccCCcCCCCCCccccCCCCCcEEeecCCccccccCccccCCCCCCeEEccC
Q 040925 322 SLYLDLSNNLLNGSLPLQVGHLKNLVILDISSNQFSGVIPGTLSTCVCLEYLDISSNSFHGVIPLSLSFLKSIKELNVSS 401 (833)
Q Consensus 322 l~~L~ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~ 401 (833)
+.|+ +.++++|++|++++|++++. + ++.+++|+.|++++|++++ ++.|..|++++
T Consensus 310 -~~L~-------------l~~~~~L~~L~L~~N~l~~l-~--l~~l~~L~~L~l~~N~l~~--------l~~L~~L~l~~ 364 (457)
T 3bz5_A 310 -TELD-------------LSQNPKLVYLYLNNTELTEL-D--VSHNTKLKSLSCVNAHIQD--------FSSVGKIPALN 364 (457)
T ss_dssp -SCCC-------------CTTCTTCCEEECTTCCCSCC-C--CTTCTTCSEEECCSSCCCB--------CTTGGGSSGGG
T ss_pred -eEec-------------hhhcccCCEEECCCCccccc-c--cccCCcCcEEECCCCCCCC--------ccccccccccC
Confidence 2222 44557899999999999975 3 8999999999999999986 25677788999
Q ss_pred cccCCCchhhhcCCCCCceEECccCcCccccCCC
Q 040925 402 NNLSGQIPEFLKNLSVLEFLSLSYNHFEGEVPTK 435 (833)
Q Consensus 402 N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~ 435 (833)
|.++|. ..+..|+.+++++|+++|.+|..
T Consensus 365 n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~~ 393 (457)
T 3bz5_A 365 NNFEAE-----GQTITMPKETLTNNSLTIAVSPD 393 (457)
T ss_dssp TSEEEE-----EEEEECCCBCCBTTBEEEECCTT
T ss_pred CcEEec-----ceeeecCccccccCcEEEEcChh
Confidence 999875 35667888999999999988754
No 58
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=4.1e-39 Score=359.02 Aligned_cols=375 Identities=25% Similarity=0.317 Sum_probs=275.3
Q ss_pred CccccCCCCCCEEEccCCcccccCCccCCCCCCCCEEEcCCCcccccCCccccCCCCC-------------cEEECCCcc
Q 040925 16 PDFVGNLSDLEVIRIMGNSLGGKIPTTLGLLRNLVSLNVAENKFSGMFPRSICNISSL-------------ELIQLALNR 82 (833)
Q Consensus 16 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L-------------~~L~L~~N~ 82 (833)
|+.+. .++|++|++++|.+ +.+|.+|+.+++|++|++++|++++..|..++++.+| ++|++++|.
T Consensus 5 p~~~~-~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~ 82 (454)
T 1jl5_A 5 PRNVS-NTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLG 82 (454)
T ss_dssp -------------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSC
T ss_pred ccccc-cccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCc
Confidence 55454 58999999999999 8899999999999999999999999999999999875 999999999
Q ss_pred cccccCchhhcCCCCccEEEccCCcceeeCCccccCCCCCcEEEcccCccccccCcCccCCCcCceEecccccCCCCCCC
Q 040925 83 FSGNLPFDIVVNLPNLKALAIGGNNFFGSIPYSLSNASNLELLDLSVNQFKGNVSIDFSSLKNLLWLNLEQNNLGTGTAT 162 (833)
Q Consensus 83 l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 162 (833)
++ .+|. -.++|++|+|++|.+++ +|.. +++|++|++++|++++++.. .++|++|+|++|+++.++
T Consensus 83 l~-~lp~----~~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~l~~~----~~~L~~L~L~~n~l~~lp-- 147 (454)
T 1jl5_A 83 LS-SLPE----LPPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKALSDL----PPLLEYLGVSNNQLEKLP-- 147 (454)
T ss_dssp CS-CCCS----CCTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSCCCSC----CTTCCEEECCSSCCSSCC--
T ss_pred cc-cCCC----CcCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCcccCC----CCCCCEEECcCCCCCCCc--
Confidence 98 6775 24799999999999996 6654 48899999999999976532 279999999999998754
Q ss_pred CcccccccCCCCCCCEEEccCCcCcccCChhHhhhcccccEEEccCccccccCChhhhcCCCCCeEeccCCcccccCCcc
Q 040925 163 DLDFVTFLTNCSSLKALSLADNQFGGELPHSIANLSSTVINFGIGRNQISGTIPPGIRNLVNLIGFGAEENQLHGTIPDA 242 (833)
Q Consensus 163 ~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 242 (833)
.+.++++|++|++++|++++ +|..+ ..++.|++++|++++ +| .|+++++|+.|++++|++++ +|..
T Consensus 148 ------~~~~l~~L~~L~l~~N~l~~-lp~~~----~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~ 213 (454)
T 1jl5_A 148 ------ELQNSSFLKIIDVDNNSLKK-LPDLP----PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDL 213 (454)
T ss_dssp ------CCTTCTTCCEEECCSSCCSC-CCCCC----TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCC
T ss_pred ------ccCCCCCCCEEECCCCcCcc-cCCCc----ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCC
Confidence 27899999999999999994 66543 368999999999997 45 69999999999999999996 4443
Q ss_pred ccCCCCCCEEEcccccCcccCCccccCCCCCCeEEeecccccCCCCCCCCCCCccceeecCCceecccCCcccccccccc
Q 040925 243 IGELKNLQKLCLFRNFLQGRIPSGLGNLTKLANLELSSNSLQGNIPSSLGNCQNLMSFTASQNKLTGALPHQLLSITTLS 322 (833)
Q Consensus 243 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~ll 322 (833)
.++|++|++++|.++ .+| .|..+++|++|++++|++++ +|.. +++|+.|++++|+++ .+|... ..+
T Consensus 214 ---~~~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~N~l~-~l~~~~---~~L- 279 (454)
T 1jl5_A 214 ---PLSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKT-LPDL---PPSLEALNVRDNYLT-DLPELP---QSL- 279 (454)
T ss_dssp ---CTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSS-CCSC---CTTCCEEECCSSCCS-CCCCCC---TTC-
T ss_pred ---cCcccEEECcCCcCC-ccc-ccCCCCCCCEEECCCCcCCc-cccc---ccccCEEECCCCccc-ccCccc---CcC-
Confidence 258999999999999 566 49999999999999999985 4543 479999999999999 467543 334
Q ss_pred eeeecCCCccCCCCCcccccCCCcCEEeccCCcCCCCCCccccCC-CCCcEEeecCCccccccCccccCCCCCCeEEccC
Q 040925 323 LYLDLSNNLLNGSLPLQVGHLKNLVILDISSNQFSGVIPGTLSTC-VCLEYLDISSNSFHGVIPLSLSFLKSIKELNVSS 401 (833)
Q Consensus 323 ~~L~ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l-~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~ 401 (833)
++|++++|.+++. |.. .++|+.|++++|+++++ ..+ ++|++|++++|++++ +|.. +++|+.|++++
T Consensus 280 ~~L~ls~N~l~~l-~~~---~~~L~~L~l~~N~l~~i-----~~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~ 346 (454)
T 1jl5_A 280 TFLDVSENIFSGL-SEL---PPNLYYLNASSNEIRSL-----CDLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASF 346 (454)
T ss_dssp CEEECCSSCCSEE-SCC---CTTCCEEECCSSCCSEE-----CCCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCS
T ss_pred CEEECcCCccCcc-cCc---CCcCCEEECcCCcCCcc-----cCCcCcCCEEECCCCcccc-cccc---CCcCCEEECCC
Confidence 7899999999863 211 27899999999999853 233 589999999999997 4443 58999999999
Q ss_pred cccCCCchhhhcCCCCCceEECccCcCcc--ccCC-CCcc-------------CCCccccccCCcCC
Q 040925 402 NNLSGQIPEFLKNLSVLEFLSLSYNHFEG--EVPT-KGVF-------------SNKTKISLQGNMKL 452 (833)
Q Consensus 402 N~l~~~~p~~l~~l~~L~~L~l~~N~l~~--~~~~-~~~~-------------~~~~~l~l~~N~~~ 452 (833)
|++++ +|. .+++|++|++++|++++ ..|. .+.+ .+++.+++++|+..
T Consensus 347 N~l~~-lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~ 409 (454)
T 1jl5_A 347 NHLAE-VPE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLR 409 (454)
T ss_dssp SCCSC-CCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC-----------------------
T ss_pred Ccccc-ccc---hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCC
Confidence 99995 555 47899999999999999 3343 2333 56777778877654
No 59
>3zgw_A Maternal embryonic leucine zipper kinase; transferase; HET: ANP; 2.60A {Homo sapiens}
Probab=100.00 E-value=1.9e-40 Score=355.82 Aligned_cols=252 Identities=23% Similarity=0.297 Sum_probs=197.8
Q ss_pred HhcCCccCceeccCcceEEEEEEECCCceEEEEEEeeccC-CcchhHHHHHHHHHhhcCCCccceEeeEeecCCCCCCce
Q 040925 529 ATGEFSSSNMIGQGSFGYVYKGTLGEDEMIVAVKVINLKY-KGASRSFVAECEALRNIRHRNLIKIITICSSTDFKGTDF 607 (833)
Q Consensus 529 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~ 607 (833)
..++|++.+.||+|+||.||+|++..+++.||||++.... ....+.+.+|++++++++||||+++++++...+ .
T Consensus 8 l~~~y~i~~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~~~~~~~~~~~~Ei~~l~~l~hpnIv~l~~~~~~~~-----~ 82 (347)
T 3zgw_A 8 LLKYYELHETIGTGGFAKVKLACHILTGEMVAIKIMDKNTLGSDLPRIKTEIEALKNLRHQHICQLYHVLETAN-----K 82 (347)
T ss_dssp TTTTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEESSCC---CCHHHHHHHHHHTCCCTTBCCEEEEEECSS-----E
T ss_pred HhcCeEEEEEEEcCCCeEEEEEEECCCCCEEEEEEEEccccchHHHHHHHHHHHHHhCCCCCEeeEEEEEEeCC-----E
Confidence 3568999999999999999999999999999999997543 233567899999999999999999999976554 8
Q ss_pred EeEEEEecCCCChhhhhccCCCccccccCCHHHHHHHHHHHHHHHHHHhhcCCCCceeeCCCCCCeeecCCCcEEEcccc
Q 040925 608 KAFVFEYMENGSLKDWLHQSDDQVEVCKLSLIQRVNIAIDVASAMEYLHHHCQPPMVHGDLKPSNVLLDHDMVAHVCDFG 687 (833)
Q Consensus 608 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~gL~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kL~DfG 687 (833)
.++||||+++|+|.+++.... .+++.+++.++.|++.||+|||+. +|+||||||+||+++.++.+||+|||
T Consensus 83 ~~lv~E~~~gg~L~~~l~~~~------~l~~~~~~~i~~qi~~aL~~LH~~---givHrDlkp~NIll~~~~~~kL~DFG 153 (347)
T 3zgw_A 83 IFMVLEYCPGGELFDYIISQD------RLSEEETRVVFRQIVSAVAYVHSQ---GYAHRDLKPENLLFDEYHKLKLIDFG 153 (347)
T ss_dssp EEEEEECCTTCBHHHHHHHHS------SCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCCGGGEEECTTSCEEECCCT
T ss_pred EEEEEeCCCCCCHHHHHHHcC------CCCHHHHHHHHHHHHHHHHHHHHC---CeEeCCccHHHEEEcCCCCEEEEecc
Confidence 999999999999999997654 689999999999999999999999 99999999999999999999999999
Q ss_pred cccccCcccccccccCCCccccccccccccCccccCCCCC-CcccccccCCcCCCccccCCccHHHHHHHhCCCcccccc
Q 040925 688 LAKFLSDHQLDTAVKTPSSSIGLKGTVGYVAPEYGMGSEA-SMTGDIFTGRRPIDAVFNEGHSLHEFAKTALPEKVMEIV 766 (833)
Q Consensus 688 ~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~-~~~~Di~s~~~~~~~~~~~g~~l~~~~~~~~p~~~~~~~ 766 (833)
+|........ ......+||+.|+|||++.+..+ +.++|||| .|+++++++++..|+......
T Consensus 154 ~a~~~~~~~~-------~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwS----------lG~il~ell~g~~Pf~~~~~~ 216 (347)
T 3zgw_A 154 LCAKPKGNKD-------YHLQTCCGSLAYAAPELIQGKSYLGSEADVWS----------MGILLYVLMCGFLPFDDDNVM 216 (347)
T ss_dssp TCBC---------------------CGGGCCHHHHTTC---CCHHHHHH----------HHHHHHHHHHSSCSSCCSSHH
T ss_pred CcccccCCCC-------ccccccCCccCccCHHHHcCCCCCCcHhHHHH----------HHHHHHHHHHCCCCCCCCCHH
Confidence 9876543211 11223569999999999988775 88999999 888999999999987632211
Q ss_pred cccchhhhccccchhhhhhhhchHHHHHHHHHHhhccCCCCCCCCCCHHHHHHH
Q 040925 767 DPSLLMEVMTNNSMIQEDKRVKTEECLNAIIRTGVLCSMESPFERMDMRDVVAK 820 (833)
Q Consensus 767 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~ 820 (833)
........... ..+..+++.+.+++.+||+.||++|||++|+++.
T Consensus 217 --~~~~~i~~~~~-------~~p~~~s~~~~~li~~~L~~dP~~Rps~~eil~h 261 (347)
T 3zgw_A 217 --ALYKKIMRGKY-------DVPKWLSPSSILLLQQMLQVDPKKRISMKNLLNH 261 (347)
T ss_dssp --HHHHHHHHTCC-------CCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHTC
T ss_pred --HHHHHHHcCCC-------CCCCCCCHHHHHHHHHHcccCHhHCcCHHHHhcC
Confidence 11111111111 1112245567899999999999999999999875
No 60
>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A*
Probab=100.00 E-value=1e-39 Score=348.31 Aligned_cols=263 Identities=22% Similarity=0.265 Sum_probs=213.1
Q ss_pred CccchHHHHHHhcC----------CccCceeccCcceEEEEEEECCCceEEEEEEeeccCCcchhHHHHHHHHHhhcCCC
Q 040925 519 PMVSYAELSKATGE----------FSSSNMIGQGSFGYVYKGTLGEDEMIVAVKVINLKYKGASRSFVAECEALRNIRHR 588 (833)
Q Consensus 519 ~~~~~~~~~~~~~~----------y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~ 588 (833)
+.++.+++..++.. |+..+.||+|+||.||+|++..+|+.||||+++.......+.+.+|+.++++++||
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~G~~g~V~~a~~~~~g~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~ 102 (321)
T 2c30_A 23 GVVTHEQFKAALRMVVDQGDPRLLLDSYVKIGEGSTGIVCLAREKHSGRQVAVKMMDLRKQQRRELLFNEVVIMRDYQHF 102 (321)
T ss_dssp --CCHHHHHHHHHTTSCSSCHHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCSHHHHHHHHHHHTTCCCT
T ss_pred CcCcHHHHHHHHhhccCCCCchhhhhccEEeccCCCeEEEEEEECCCCcEEEEEEEeccchhHHHHHHHHHHHHHhCCCC
Confidence 56778888887764 77788999999999999999989999999999866666667899999999999999
Q ss_pred ccceEeeEeecCCCCCCceEeEEEEecCCCChhhhhccCCCccccccCCHHHHHHHHHHHHHHHHHHhhcCCCCceeeCC
Q 040925 589 NLIKIITICSSTDFKGTDFKAFVFEYMENGSLKDWLHQSDDQVEVCKLSLIQRVNIAIDVASAMEYLHHHCQPPMVHGDL 668 (833)
Q Consensus 589 niv~~~~~~~~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~gL~~LH~~~~~~ivH~Dl 668 (833)
||+++++++...+ ..++||||+++|+|.+++... .+++..+..++.|++.||+|||+. +|+||||
T Consensus 103 niv~~~~~~~~~~-----~~~lv~e~~~~~~L~~~l~~~-------~l~~~~~~~i~~qi~~~L~~LH~~---~ivH~Dl 167 (321)
T 2c30_A 103 NVVEMYKSYLVGE-----ELWVLMEFLQGGALTDIVSQV-------RLNEEQIATVCEAVLQALAYLHAQ---GVIHRDI 167 (321)
T ss_dssp TBCCEEEEEEETT-----EEEEEECCCCSCBHHHHHTTC-------CCCHHHHHHHHHHHHHHHHHHHHT---TEECCCC
T ss_pred CcceEEEEEEECC-----EEEEEEecCCCCCHHHHHHhc-------CCCHHHHHHHHHHHHHHHHHHHHC---CeecCCC
Confidence 9999999987655 899999999999999998753 589999999999999999999999 9999999
Q ss_pred CCCCeeecCCCcEEEcccccccccCcccccccccCCCccccccccccccCccccCCCCCCcccccccCCcCCCccccCCc
Q 040925 669 KPSNVLLDHDMVAHVCDFGLAKFLSDHQLDTAVKTPSSSIGLKGTVGYVAPEYGMGSEASMTGDIFTGRRPIDAVFNEGH 748 (833)
Q Consensus 669 kp~NIll~~~~~~kL~DfG~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~s~~~~~~~~~~~g~ 748 (833)
||+||+++.++.+||+|||++........ ......||+.|+|||++.+..++.++|||| +|+
T Consensus 168 kp~NIll~~~~~~kl~Dfg~~~~~~~~~~--------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s----------lG~ 229 (321)
T 2c30_A 168 KSDSILLTLDGRVKLSDFGFCAQISKDVP--------KRKSLVGTPYWMAPEVISRSLYATEVDIWS----------LGI 229 (321)
T ss_dssp SGGGEEECTTCCEEECCCTTCEECCSSSC--------CBCCCCSCGGGCCHHHHTTCCBCTHHHHHH----------HHH
T ss_pred CHHHEEECCCCcEEEeeeeeeeecccCcc--------ccccccCCccccCHhhhcCCCCCchhhHHH----------HHH
Confidence 99999999999999999999986644221 112356999999999999999999999999 888
Q ss_pred cHHHHHHHhCCCcccccccccchhhhccccchhhhhhhhchHHHHHHHHHHhhccCCCCCCCCCCHHHHHHH
Q 040925 749 SLHEFAKTALPEKVMEIVDPSLLMEVMTNNSMIQEDKRVKTEECLNAIIRTGVLCSMESPFERMDMRDVVAK 820 (833)
Q Consensus 749 ~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~ 820 (833)
++++++++..|+......+ .......... ........+++.+.+++.+||+.||++|||++|+++.
T Consensus 230 il~el~~g~~pf~~~~~~~--~~~~~~~~~~----~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~h 295 (321)
T 2c30_A 230 MVIEMVDGEPPYFSDSPVQ--AMKRLRDSPP----PKLKNSHKVSPVLRDFLERMLVRDPQERATAQELLDH 295 (321)
T ss_dssp HHHHHHHSSCTTTTSCHHH--HHHHHHHSSC----CCCTTGGGSCHHHHHHHHHHSCSSTTTSCCHHHHHTS
T ss_pred HHHHHHhCCCCCCCCCHHH--HHHHHhcCCC----CCcCccccCCHHHHHHHHHHccCChhhCcCHHHHhcC
Confidence 9999999988875322111 1000000000 0001112345678899999999999999999999874
No 61
>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A*
Probab=100.00 E-value=5.4e-40 Score=348.28 Aligned_cols=266 Identities=25% Similarity=0.369 Sum_probs=202.5
Q ss_pred HHHHHhcCCccCceeccCcceEEEEEEECCCceEEEEEEeeccCC--cchhHHHHHHHHHhhcCCCccceEeeEeecCCC
Q 040925 525 ELSKATGEFSSSNMIGQGSFGYVYKGTLGEDEMIVAVKVINLKYK--GASRSFVAECEALRNIRHRNLIKIITICSSTDF 602 (833)
Q Consensus 525 ~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~--~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~ 602 (833)
++....++|++.+.||+|+||.||+|++ +++.||||++..... ...+.+.+|++++++++||||+++++++....
T Consensus 31 ~~~i~~~~y~i~~~lG~G~~g~V~~~~~--~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~- 107 (309)
T 3p86_A 31 DMDIPWCDLNIKEKIGAGSFGTVHRAEW--HGSDVAVKILMEQDFHAERVNEFLREVAIMKRLRHPNIVLFMGAVTQPP- 107 (309)
T ss_dssp -CBCCGGGEEEEEEEEECSSEEEEEEEE--TTEEEEEEEECCCCCSHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSTT-
T ss_pred cccCChhHceeeeEeecCCCeEEEEEEE--CCCcEEEEEecCCCCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECC-
Confidence 3334457899999999999999999988 578899999975432 23357889999999999999999999976544
Q ss_pred CCCceEeEEEEecCCCChhhhhccCCCccccccCCHHHHHHHHHHHHHHHHHHhhcCCCC--ceeeCCCCCCeeecCCCc
Q 040925 603 KGTDFKAFVFEYMENGSLKDWLHQSDDQVEVCKLSLIQRVNIAIDVASAMEYLHHHCQPP--MVHGDLKPSNVLLDHDMV 680 (833)
Q Consensus 603 ~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~gL~~LH~~~~~~--ivH~Dlkp~NIll~~~~~ 680 (833)
..++||||+++|+|.+++...... ..+++..++.++.|++.||+|||+. + |+||||||+||+++.++.
T Consensus 108 ----~~~lv~e~~~~~~L~~~l~~~~~~---~~~~~~~~~~i~~qi~~aL~~LH~~---~~~ivH~Dikp~NIll~~~~~ 177 (309)
T 3p86_A 108 ----NLSIVTEYLSRGSLYRLLHKSGAR---EQLDERRRLSMAYDVAKGMNYLHNR---NPPIVHRNLKSPNLLVDKKYT 177 (309)
T ss_dssp ----CCEEEEECCTTCBHHHHHHSTTHH---HHSCHHHHHHHHHHHHHHHHHHHTS---SSCCCCTTCCGGGEEECTTCC
T ss_pred ----ceEEEEecCCCCcHHHHHhhcCCC---CCCCHHHHHHHHHHHHHHHHHHHcC---CCCEECCCCChhhEEEeCCCc
Confidence 789999999999999999875421 1489999999999999999999999 8 999999999999999999
Q ss_pred EEEcccccccccCcccccccccCCCccccccccccccCccccCCCCCCcccccccCCcCCCccccCCccHHHHHHHhCCC
Q 040925 681 AHVCDFGLAKFLSDHQLDTAVKTPSSSIGLKGTVGYVAPEYGMGSEASMTGDIFTGRRPIDAVFNEGHSLHEFAKTALPE 760 (833)
Q Consensus 681 ~kL~DfG~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~s~~~~~~~~~~~g~~l~~~~~~~~p~ 760 (833)
+||+|||+++....... ......||+.|+|||++.+..++.++|||| +|+++++++++..|+
T Consensus 178 ~kL~Dfg~a~~~~~~~~--------~~~~~~gt~~y~aPE~~~~~~~~~~~Diws----------lG~il~elltg~~Pf 239 (309)
T 3p86_A 178 VKVCDFGLSRLKASTFL--------SSKSAAGTPEWMAPEVLRDEPSNEKSDVYS----------FGVILWELATLQQPW 239 (309)
T ss_dssp EEECCCC-------------------------CCTTSCHHHHTTCCCCTTHHHHH----------HHHHHHHHHHCCCTT
T ss_pred EEECCCCCCcccccccc--------ccccCCCCccccChhhhcCCCCCchhhHHH----------HHHHHHHHHhCCCCC
Confidence 99999999975443211 112356999999999999999999999999 888999999999887
Q ss_pred cccccccccchhhhccccchhhhhhhhchHHHHHHHHHHhhccCCCCCCCCCCHHHHHHHHHHhhhhh
Q 040925 761 KVMEIVDPSLLMEVMTNNSMIQEDKRVKTEECLNAIIRTGVLCSMESPFERMDMRDVVAKLCHTRETF 828 (833)
Q Consensus 761 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~i~~~~ 828 (833)
...... .......... .....+..+++.+.+++.+||..||++|||++|+++.|+.+.+..
T Consensus 240 ~~~~~~--~~~~~~~~~~-----~~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~~ll~~L~~~~~~~ 300 (309)
T 3p86_A 240 GNLNPA--QVVAAVGFKC-----KRLEIPRNLNPQVAAIIEGCWTNEPWKRPSFATIMDLLRPLIKSA 300 (309)
T ss_dssp TTSCHH--HHHHHHHHSC-----CCCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHC--
T ss_pred CCCCHH--HHHHHHHhcC-----CCCCCCccCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHHhC
Confidence 632211 1100000000 001112335567899999999999999999999999999987654
No 62
>2yab_A Death-associated protein kinase 2; apoptosis, transferase; HET: AMP; 1.90A {Mus musculus} PDB: 2yaa_A* 2ya9_A*
Probab=100.00 E-value=1.3e-39 Score=351.58 Aligned_cols=253 Identities=20% Similarity=0.240 Sum_probs=205.2
Q ss_pred hcCCccCceeccCcceEEEEEEECCCceEEEEEEeeccCCc------chhHHHHHHHHHhhcCCCccceEeeEeecCCCC
Q 040925 530 TGEFSSSNMIGQGSFGYVYKGTLGEDEMIVAVKVINLKYKG------ASRSFVAECEALRNIRHRNLIKIITICSSTDFK 603 (833)
Q Consensus 530 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~------~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~ 603 (833)
.++|++.+.||+|+||.||+|++..+|+.||+|+++..... ..+.+.+|+.++++++||||+++++++....
T Consensus 11 ~~~y~~~~~LG~G~fg~V~~~~~~~~~~~~avK~i~~~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~~~-- 88 (361)
T 2yab_A 11 EDFYDIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVCREEIEREVSILRQVLHPNIITLHDVYENRT-- 88 (361)
T ss_dssp GGTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHTTCCCTTBCCEEEEEECSS--
T ss_pred hhceEEeeEEeeCcCEEEEEEEECCCCCEEEEEEEEccccccccchhHHHHHHHHHHHHHhCCCcCCCcEEEEEEeCC--
Confidence 45799999999999999999999999999999999754322 2467899999999999999999999976554
Q ss_pred CCceEeEEEEecCCCChhhhhccCCCccccccCCHHHHHHHHHHHHHHHHHHhhcCCCCceeeCCCCCCeeecCCC----
Q 040925 604 GTDFKAFVFEYMENGSLKDWLHQSDDQVEVCKLSLIQRVNIAIDVASAMEYLHHHCQPPMVHGDLKPSNVLLDHDM---- 679 (833)
Q Consensus 604 ~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~gL~~LH~~~~~~ivH~Dlkp~NIll~~~~---- 679 (833)
..++||||+++|+|.+++.... .+++..+..++.||+.||.|||+. ||+||||||+||+++.++
T Consensus 89 ---~~~lv~e~~~gg~L~~~l~~~~------~l~~~~~~~i~~qi~~aL~~LH~~---givHrDlkp~NIll~~~~~~~~ 156 (361)
T 2yab_A 89 ---DVVLILELVSGGELFDFLAQKE------SLSEEEATSFIKQILDGVNYLHTK---KIAHFDLKPENIMLLDKNIPIP 156 (361)
T ss_dssp ---EEEEEEECCCSCBHHHHHTTCS------CCBHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEESCTTSSSC
T ss_pred ---EEEEEEEcCCCCcHHHHHHhcC------CCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEEEeCCCCCcc
Confidence 8999999999999999997654 689999999999999999999999 999999999999998877
Q ss_pred cEEEcccccccccCcccccccccCCCccccccccccccCccccCCCCCCcccccccCCcCCCccccCCccHHHHHHHhCC
Q 040925 680 VAHVCDFGLAKFLSDHQLDTAVKTPSSSIGLKGTVGYVAPEYGMGSEASMTGDIFTGRRPIDAVFNEGHSLHEFAKTALP 759 (833)
Q Consensus 680 ~~kL~DfG~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~s~~~~~~~~~~~g~~l~~~~~~~~p 759 (833)
.+||+|||+++...... ......||+.|+|||++.+..++.++|||| .|+++|+++++..|
T Consensus 157 ~vkl~DFG~a~~~~~~~---------~~~~~~gt~~y~aPE~~~~~~~~~~~Diws----------lGvil~~ll~g~~P 217 (361)
T 2yab_A 157 HIKLIDFGLAHEIEDGV---------EFKNIFGTPEFVAPEIVNYEPLGLEADMWS----------IGVITYILLSGASP 217 (361)
T ss_dssp CEEECCCSSCEECCTTC---------CCCCCCSCGGGCCHHHHTTCCCCTHHHHHH----------HHHHHHHHHHSCCS
T ss_pred CEEEEecCCceEcCCCC---------ccccCCCCccEECchHHcCCCCCccccHHH----------HHHHHHHHHhCCCC
Confidence 79999999998765421 122356999999999999999999999999 88899999999998
Q ss_pred CcccccccccchhhhccccchhhhhhhhchHHHHHHHHHHhhccCCCCCCCCCCHHHHHHH
Q 040925 760 EKVMEIVDPSLLMEVMTNNSMIQEDKRVKTEECLNAIIRTGVLCSMESPFERMDMRDVVAK 820 (833)
Q Consensus 760 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~ 820 (833)
+..... ............... ......+++.+.+++.+||..||++|||++|+++.
T Consensus 218 f~~~~~--~~~~~~i~~~~~~~~---~~~~~~~s~~~~~li~~~L~~dP~~R~t~~e~l~h 273 (361)
T 2yab_A 218 FLGDTK--QETLANITAVSYDFD---EEFFSQTSELAKDFIRKLLVKETRKRLTIQEALRH 273 (361)
T ss_dssp SCCSSH--HHHHHHHHTTCCCCC---HHHHTTSCHHHHHHHHHHSCSSTTTSCCHHHHHTS
T ss_pred CCCCCH--HHHHHHHHhcCCCCC---chhccCCCHHHHHHHHHHCCCChhHCcCHHHHhcC
Confidence 753211 111111111111000 11122345678899999999999999999999853
No 63
>3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 4asx_A* 2qlu_A*
Probab=100.00 E-value=5.1e-40 Score=351.18 Aligned_cols=271 Identities=23% Similarity=0.290 Sum_probs=207.0
Q ss_pred hcCCccCceeccCcceEEEEEEECCCceEEEEEEeeccCCcchhHHHHHHHHHhhcCCCccceEeeEeecCCCCCCceEe
Q 040925 530 TGEFSSSNMIGQGSFGYVYKGTLGEDEMIVAVKVINLKYKGASRSFVAECEALRNIRHRNLIKIITICSSTDFKGTDFKA 609 (833)
Q Consensus 530 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~~ 609 (833)
.++|++.+.||+|+||.||+|++. ++.||||+++... .......+|+.++++++||||+++++++.... ......+
T Consensus 23 ~~~y~~~~~lg~G~~g~Vy~~~~~--~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~-~~~~~~~ 98 (322)
T 3soc_A 23 SMPLQLLEVKARGRFGCVWKAQLL--NEYVAVKIFPIQD-KQSWQNEYEVYSLPGMKHENILQFIGAEKRGT-SVDVDLW 98 (322)
T ss_dssp TEEEEEEEEEECSTTCEEEEEEET--TEEEEEEEECGGG-HHHHHHHHHHHTSTTCCCTTBCCEEEEEEEEC-SSSEEEE
T ss_pred hhhchhhheecccCceEEEEEEEC--CCEEEEEEeecCc-hHHHHHHHHHHHHhcCCCCCchhhcceeccCC-CCCceEE
Confidence 468999999999999999999985 7899999996432 23345667999999999999999999987643 1234579
Q ss_pred EEEEecCCCChhhhhccCCCccccccCCHHHHHHHHHHHHHHHHHHhhcC-------CCCceeeCCCCCCeeecCCCcEE
Q 040925 610 FVFEYMENGSLKDWLHQSDDQVEVCKLSLIQRVNIAIDVASAMEYLHHHC-------QPPMVHGDLKPSNVLLDHDMVAH 682 (833)
Q Consensus 610 lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~gL~~LH~~~-------~~~ivH~Dlkp~NIll~~~~~~k 682 (833)
+||||+++|+|.+++... .+++..++.++.|++.||+|||+.+ .++|+||||||+||+++.++.+|
T Consensus 99 lv~e~~~~g~L~~~l~~~-------~~~~~~~~~i~~qi~~al~~LH~~~~~l~~~~~~~ivH~Dlkp~Nill~~~~~~k 171 (322)
T 3soc_A 99 LITAFHEKGSLSDFLKAN-------VVSWNELCHIAETMARGLAYLHEDIPGLKDGHKPAISHRDIKSKNVLLKNNLTAC 171 (322)
T ss_dssp EEEECCTTCBHHHHHHHC-------CBCHHHHHHHHHHHHHHHHHHTCCEEEETTEEECEEECSCCSGGGEEECTTCCEE
T ss_pred EEEecCCCCCHHHHHHhc-------CCCHHHHHHHHHHHHHHHHHHHhhccccccccCCCEEeCCCChHhEEECCCCeEE
Confidence 999999999999999764 5899999999999999999999761 34899999999999999999999
Q ss_pred EcccccccccCcccccccccCCCccccccccccccCccccCC-----CCCCcccccccCCcCCCccccCCccHHHHHHHh
Q 040925 683 VCDFGLAKFLSDHQLDTAVKTPSSSIGLKGTVGYVAPEYGMG-----SEASMTGDIFTGRRPIDAVFNEGHSLHEFAKTA 757 (833)
Q Consensus 683 L~DfG~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-----~~~~~~~Di~s~~~~~~~~~~~g~~l~~~~~~~ 757 (833)
|+|||+|+........ .......||+.|+|||++.+ ..++.++|||| +|+++++++++.
T Consensus 172 L~DFg~a~~~~~~~~~------~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~Diws----------lG~il~el~tg~ 235 (322)
T 3soc_A 172 IADFGLALKFEAGKSA------GDTHGQVGTRRYMAPEVLEGAINFQRDAFLRIDMYA----------MGLVLWELASRC 235 (322)
T ss_dssp ECCCTTCEEECTTSCC------CCCTTCCCCGGGCCHHHHTTCCCCCHHHHHHHHHHH----------HHHHHHHHHTTB
T ss_pred EccCCcccccccccCc------cccccCccCccccCHhhcccccccCcCCCccchhHH----------HHHHHHHHHhCC
Confidence 9999999866543211 11223569999999999876 45678899999 888889999988
Q ss_pred CCCccccccc-ccc------------hhh-hccccchhhhhhhhchHHHHHHHHHHhhccCCCCCCCCCCHHHHHHHHHH
Q 040925 758 LPEKVMEIVD-PSL------------LME-VMTNNSMIQEDKRVKTEECLNAIIRTGVLCSMESPFERMDMRDVVAKLCH 823 (833)
Q Consensus 758 ~p~~~~~~~~-~~~------------~~~-~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~ 823 (833)
.|+....... ..+ ... ..................+++.+.+++.+||+.||++|||++|+++.|+.
T Consensus 236 ~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~ell~~L~~ 315 (322)
T 3soc_A 236 TAADGPVDEYMLPFEEEIGQHPSLEDMQEVVVHKKKRPVLRDYWQKHAGMAMLCETIEECWDHDAEARLSAGCVGERITQ 315 (322)
T ss_dssp TTSSSCCCCCCCTTHHHHCSSCCHHHHHHHHTTSCCCCCCCGGGGSSHHHHHHHHHHHHHTCSSGGGSCCHHHHHHHHHH
T ss_pred CCCCCCcchhccchhhhhccCCchhhhhhhhhcccCCCCccccccccchHHHHHHHHHHHccCChhhCcCHHHHHHHHHH
Confidence 8764211000 000 000 00000000111112233456779999999999999999999999999999
Q ss_pred hhhh
Q 040925 824 TRET 827 (833)
Q Consensus 824 i~~~ 827 (833)
+.+.
T Consensus 316 l~~~ 319 (322)
T 3soc_A 316 MQRL 319 (322)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9764
No 64
>3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens}
Probab=100.00 E-value=3.2e-40 Score=352.95 Aligned_cols=264 Identities=26% Similarity=0.373 Sum_probs=206.5
Q ss_pred hcCCccCceeccCcceEEEEEEECCC---ceEEEEEEeeccCC-cchhHHHHHHHHHhhcCCCccceEeeEeecCCCCCC
Q 040925 530 TGEFSSSNMIGQGSFGYVYKGTLGED---EMIVAVKVINLKYK-GASRSFVAECEALRNIRHRNLIKIITICSSTDFKGT 605 (833)
Q Consensus 530 ~~~y~~~~~lg~G~~g~Vy~~~~~~~---~~~vavK~~~~~~~-~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~ 605 (833)
.++|++.+.||+|+||.||+|++..+ +..||||+++.... ...+.+.+|++++++++||||+++++++....
T Consensus 48 ~~~y~i~~~lG~G~~g~V~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~---- 123 (325)
T 3kul_A 48 ASRIHIEKIIGSGDSGEVCYGRLRVPGQRDVPVAIKALKAGYTERQRRDFLSEASIMGQFDHPNIIRLEGVVTRGR---- 123 (325)
T ss_dssp GGGEEEEEEEEETTTEEEEEEEECCTTSCCEEEEEEEECTTCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECGGG----
T ss_pred hhHeEEeeEEEeCCCcEEEEEEEecCCCCCceEEEEecCCCCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEeCC----
Confidence 35799999999999999999999754 44699999975432 33467899999999999999999999975544
Q ss_pred ceEeEEEEecCCCChhhhhccCCCccccccCCHHHHHHHHHHHHHHHHHHhhcCCCCceeeCCCCCCeeecCCCcEEEcc
Q 040925 606 DFKAFVFEYMENGSLKDWLHQSDDQVEVCKLSLIQRVNIAIDVASAMEYLHHHCQPPMVHGDLKPSNVLLDHDMVAHVCD 685 (833)
Q Consensus 606 ~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~gL~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kL~D 685 (833)
..++||||+++|+|.+++..... .+++.+++.++.|++.||+|||+. +|+||||||+||+++.++.+||+|
T Consensus 124 -~~~lv~e~~~~~~L~~~l~~~~~-----~~~~~~~~~i~~qi~~~L~~LH~~---~ivH~Dlkp~NIll~~~~~~kl~D 194 (325)
T 3kul_A 124 -LAMIVTEYMENGSLDTFLRTHDG-----QFTIMQLVGMLRGVGAGMRYLSDL---GYVHRDLAARNVLVDSNLVCKVSD 194 (325)
T ss_dssp -CCEEEEECCTTCBHHHHHHTTTT-----CSCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTCCEEECC
T ss_pred -ccEEEeeCCCCCcHHHHHHhccc-----CCCHHHHHHHHHHHHHHHHHHHHC---CeeCCCCCcceEEECCCCCEEECC
Confidence 78999999999999999976532 689999999999999999999999 999999999999999999999999
Q ss_pred cccccccCcccccccccCCCccccccccccccCccccCCCCCCcccccccCCcCCCccccCCccHHHHHH-HhCCCcccc
Q 040925 686 FGLAKFLSDHQLDTAVKTPSSSIGLKGTVGYVAPEYGMGSEASMTGDIFTGRRPIDAVFNEGHSLHEFAK-TALPEKVME 764 (833)
Q Consensus 686 fG~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~s~~~~~~~~~~~g~~l~~~~~-~~~p~~~~~ 764 (833)
||+++.......... ......+|+.|+|||++.+..++.++|||| +|++++++++ +..|+....
T Consensus 195 fg~a~~~~~~~~~~~-----~~~~~~~t~~y~aPE~~~~~~~~~~~Di~s----------lG~il~ell~~g~~p~~~~~ 259 (325)
T 3kul_A 195 FGLSRVLEDDPDAAY-----TTTGGKIPIRWTAPEAIAFRTFSSASDVWS----------FGVVMWEVLAYGERPYWNMT 259 (325)
T ss_dssp CSSCEECC----CCE-----ECC---CCGGGSCHHHHHHCEECHHHHHHH----------HHHHHHHHHTTSCCTTTTSC
T ss_pred CCcccccccCcccee-----eccCCCCcccccCHhHhcCCCCCcHHHHHH----------HHHHHHHHHcCCCCCcccCC
Confidence 999987654322111 112234788999999999889999999999 7788888887 777764221
Q ss_pred cccccchhhhccccchhhhhhhhchHHHHHHHHHHhhccCCCCCCCCCCHHHHHHHHHHhhhhhh
Q 040925 765 IVDPSLLMEVMTNNSMIQEDKRVKTEECLNAIIRTGVLCSMESPFERMDMRDVVAKLCHTRETFL 829 (833)
Q Consensus 765 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~i~~~~~ 829 (833)
. .......... . ....+..+++.+.+++.+||..||++|||++||++.|+.+.+...
T Consensus 260 ~--~~~~~~~~~~-~-----~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~eil~~L~~l~~~~~ 316 (325)
T 3kul_A 260 N--RDVISSVEEG-Y-----RLPAPMGCPHALHQLMLDCWHKDRAQRPRFSQIVSVLDALIRSPE 316 (325)
T ss_dssp H--HHHHHHHHTT-C-----CCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHSCC
T ss_pred H--HHHHHHHHcC-C-----CCCCCCCcCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHhCcc
Confidence 1 1111111110 0 011223456778999999999999999999999999999987544
No 65
>3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A*
Probab=100.00 E-value=1.1e-39 Score=345.71 Aligned_cols=265 Identities=24% Similarity=0.355 Sum_probs=200.8
Q ss_pred hcCCccCceeccCcceEEEEEEECCCceEEEEEEeeccCCcchhHHHHHHHHHhh--cCCCccceEeeEeecCCCCCCce
Q 040925 530 TGEFSSSNMIGQGSFGYVYKGTLGEDEMIVAVKVINLKYKGASRSFVAECEALRN--IRHRNLIKIITICSSTDFKGTDF 607 (833)
Q Consensus 530 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~--l~h~niv~~~~~~~~~~~~~~~~ 607 (833)
.++|++.+.||+|+||.||+|++ +++.||||++... ..+.+.+|.+++.. ++||||+++++++.... .....
T Consensus 7 ~~~y~~~~~lg~G~~g~V~~~~~--~~~~vavK~~~~~---~~~~~~~e~~~~~~~~l~h~niv~~~~~~~~~~-~~~~~ 80 (301)
T 3q4u_A 7 ARDITLLECVGKGRYGEVWRGSW--QGENVAVKIFSSR---DEKSWFRETELYNTVMLRHENILGFIASDMTSR-HSSTQ 80 (301)
T ss_dssp GGGCEEEEEEEECSSEEEEEEEE--TTEEEEEEEECGG---GHHHHHHHHHHHHHTCCCCTTBCCEEEEEEEEE-TTEEE
T ss_pred cCcEEEEEeeccCCCcEEEEEEE--CCEEEEEEEeccc---cchhhHHHHHHHHHhhccCcCeeeEEEeecccc-CCCce
Confidence 46899999999999999999998 6889999998633 34556677777766 78999999999876542 33456
Q ss_pred EeEEEEecCCCChhhhhccCCCccccccCCHHHHHHHHHHHHHHHHHHh--------hcCCCCceeeCCCCCCeeecCCC
Q 040925 608 KAFVFEYMENGSLKDWLHQSDDQVEVCKLSLIQRVNIAIDVASAMEYLH--------HHCQPPMVHGDLKPSNVLLDHDM 679 (833)
Q Consensus 608 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~gL~~LH--------~~~~~~ivH~Dlkp~NIll~~~~ 679 (833)
.++||||+++|+|.+++... .+++..++.++.|++.||+||| +. +|+||||||+||+++.++
T Consensus 81 ~~lv~e~~~~g~L~~~l~~~-------~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~---~ivH~Dlkp~Nill~~~~ 150 (301)
T 3q4u_A 81 LWLITHYHEMGSLYDYLQLT-------TLDTVSCLRIVLSIASGLAHLHIEIFGTQGKP---AIAHRDLKSKNILVKKNG 150 (301)
T ss_dssp EEEEECCCTTCBHHHHHTTC-------CBCHHHHHHHHHHHHHHHHHHHSCBCSTTCBC---EEECSCCCGGGEEECTTS
T ss_pred eEEehhhccCCCHHHHHhhc-------ccCHHHHHHHHHHHHHHHHHHHHhhhhccCCC---CeecCCCChHhEEEcCCC
Confidence 89999999999999999643 5899999999999999999999 77 999999999999999999
Q ss_pred cEEEcccccccccCcccccccccCCCccccccccccccCccccCCC------CCCcccccccCCcCCCccccCCccHHHH
Q 040925 680 VAHVCDFGLAKFLSDHQLDTAVKTPSSSIGLKGTVGYVAPEYGMGS------EASMTGDIFTGRRPIDAVFNEGHSLHEF 753 (833)
Q Consensus 680 ~~kL~DfG~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~------~~~~~~Di~s~~~~~~~~~~~g~~l~~~ 753 (833)
.+||+|||+|+.......... .......||+.|+|||++.+. .++.++|||| +|++++++
T Consensus 151 ~~kl~Dfg~a~~~~~~~~~~~----~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~Dvws----------lG~il~el 216 (301)
T 3q4u_A 151 QCCIADLGLAVMHSQSTNQLD----VGNNPRVGTKRYMAPEVLDETIQVDCFDSYKRVDIWA----------FGLVLWEV 216 (301)
T ss_dssp CEEECCCTTCEEEETTTTEEE----CCCCCCCCCGGGCCHHHHTTCCCTTCHHHHHHHHHHH----------HHHHHHHH
T ss_pred CEEEeeCCCeeeccccccccc----ccccccccccceeChhhhcCcCCCCcccCCchhhHHH----------HHHHHHHH
Confidence 999999999976544322111 111234699999999998876 5668999999 78888888
Q ss_pred HHH----------hCCCcccccccccc--hhh-hccccchhhhhhhhchHHHHHHHHHHhhccCCCCCCCCCCHHHHHHH
Q 040925 754 AKT----------ALPEKVMEIVDPSL--LME-VMTNNSMIQEDKRVKTEECLNAIIRTGVLCSMESPFERMDMRDVVAK 820 (833)
Q Consensus 754 ~~~----------~~p~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~ 820 (833)
+++ ..|+......+... ... ..................+++.+.+++.+||+.||++|||++|+++.
T Consensus 217 ~tg~~~~~~~~~~~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~~i~~~ 296 (301)
T 3q4u_A 217 ARRMVSNGIVEDYKPPFYDVVPNDPSFEDMRKVVCVDQQRPNIPNRWFSDPTLTSLAKLMKECWYQNPSARLTALRIKKT 296 (301)
T ss_dssp HTTBCBTTBCCCCCCTTTTTSCSSCCHHHHHHHHTTSCCCCCCCGGGGGSHHHHHHHHHHHHHCCSSGGGSCCHHHHHHH
T ss_pred HhhhcCccccccccccccccCCCCcchhhhhHHHhccCCCCCCChhhccCccHHHHHHHHHHHhhcChhhCCCHHHHHHH
Confidence 888 34432111111100 000 00000111111122334577889999999999999999999999999
Q ss_pred HHHh
Q 040925 821 LCHT 824 (833)
Q Consensus 821 L~~i 824 (833)
|+++
T Consensus 297 L~~i 300 (301)
T 3q4u_A 297 LTKI 300 (301)
T ss_dssp HHHH
T ss_pred Hhcc
Confidence 9876
No 66
>1o6l_A RAC-beta serine/threonine protein kinase; protein kinase, transferase, serine/threonine-protein kinase; HET: TPO ANP; 1.6A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jdo_A* 2jdr_A* 2uw9_A* 2x37_A* 2x39_A* 2xh5_A* 3d0e_A* 3e87_A* 3e88_A* 3e8d_A* 1o6k_A* 1mrv_A 1mry_A 1gzn_A 1gzk_A 1gzo_A 3qkl_A* 3ocb_A* 3ow4_A* 3qkk_A* ...
Probab=100.00 E-value=1.3e-39 Score=348.53 Aligned_cols=250 Identities=23% Similarity=0.270 Sum_probs=205.1
Q ss_pred hcCCccCceeccCcceEEEEEEECCCceEEEEEEeecc---CCcchhHHHHHHHHHhhcCCCccceEeeEeecCCCCCCc
Q 040925 530 TGEFSSSNMIGQGSFGYVYKGTLGEDEMIVAVKVINLK---YKGASRSFVAECEALRNIRHRNLIKIITICSSTDFKGTD 606 (833)
Q Consensus 530 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~---~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~ 606 (833)
.++|++.+.||+|+||.||+|++..+++.||+|+++.. .......+.+|+++++.++||||+++++++...+
T Consensus 4 ~~~y~~~~~lG~G~fg~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~l~~~~~~~~----- 78 (337)
T 1o6l_A 4 MNDFDYLKLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHPFLTALKYAFQTHD----- 78 (337)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCCTTBCCEEEEEECSS-----
T ss_pred hHHeEEEEEEecCCCeEEEEEEECCCCCEEEEEEEeHHHhhhhhHHHHHHHHHHHHHhCCCCcCcceEEEEEeCC-----
Confidence 46899999999999999999999999999999999743 2334567889999999999999999999976655
Q ss_pred eEeEEEEecCCCChhhhhccCCCccccccCCHHHHHHHHHHHHHHHHHHhhcCCCCceeeCCCCCCeeecCCCcEEEccc
Q 040925 607 FKAFVFEYMENGSLKDWLHQSDDQVEVCKLSLIQRVNIAIDVASAMEYLHHHCQPPMVHGDLKPSNVLLDHDMVAHVCDF 686 (833)
Q Consensus 607 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~gL~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kL~Df 686 (833)
..|+||||+++|+|.+++...+ .+++.+++.++.||+.||+|||+. ||+||||||+||+++.++.+||+||
T Consensus 79 ~~~lv~E~~~gg~L~~~l~~~~------~~~~~~~~~~~~qi~~aL~~LH~~---~ivHrDlkp~NIll~~~g~vkL~DF 149 (337)
T 1o6l_A 79 RLCFVMEYANGGELFFHLSRER------VFTEERARFYGAEIVSALEYLHSR---DVVYRDIKLENLMLDKDGHIKITDF 149 (337)
T ss_dssp EEEEEEECCTTCBHHHHHHHHS------CCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCCGGGEEECTTSCEEECCC
T ss_pred EEEEEEeCCCCCcHHHHHHhcC------CCCHHHHHHHHHHHHHHHHHHHHC---CeecCcCCHHHEEECCCCCEEEeec
Confidence 8999999999999999997654 689999999999999999999999 9999999999999999999999999
Q ss_pred ccccccCcccccccccCCCccccccccccccCccccCCCCCCcccccccCCcCCCccccCCccHHHHHHHhCCCcccccc
Q 040925 687 GLAKFLSDHQLDTAVKTPSSSIGLKGTVGYVAPEYGMGSEASMTGDIFTGRRPIDAVFNEGHSLHEFAKTALPEKVMEIV 766 (833)
Q Consensus 687 G~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~s~~~~~~~~~~~g~~l~~~~~~~~p~~~~~~~ 766 (833)
|+|+...... ......+||+.|+|||++.+..++.++|||| .|+++|+++++..|+.....
T Consensus 150 G~a~~~~~~~--------~~~~~~~gt~~y~aPE~~~~~~~~~~~Diws----------lG~il~ell~g~~Pf~~~~~- 210 (337)
T 1o6l_A 150 GLCKEGISDG--------ATMKTFCGTPEYLAPEVLEDNDYGRAVDWWG----------LGVVMYEMMCGRLPFYNQDH- 210 (337)
T ss_dssp TTCBCSCCTT--------CCBCCCEECGGGCCGGGGSSSCBCTTHHHHH----------HHHHHHHHHHSSCSSCCSSH-
T ss_pred cchhhcccCC--------CcccccccChhhCChhhhcCCCCCchhhccc----------chhHHHHHhcCCCCCCCCCH-
Confidence 9998543221 1123457999999999999999999999999 88899999999988753211
Q ss_pred cccchhhhccccchhhhhhhhchHHHHHHHHHHhhccCCCCCCCCC-----CHHHHHHH
Q 040925 767 DPSLLMEVMTNNSMIQEDKRVKTEECLNAIIRTGVLCSMESPFERM-----DMRDVVAK 820 (833)
Q Consensus 767 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RP-----t~~eil~~ 820 (833)
............ ..+..+++.+.+++.+||+.||++|| +++|+++.
T Consensus 211 -~~~~~~i~~~~~-------~~p~~~s~~~~~li~~lL~~dP~~R~g~~~~~~~ei~~h 261 (337)
T 1o6l_A 211 -ERLFELILMEEI-------RFPRTLSPEAKSLLAGLLKKDPKQRLGGGPSDAKEVMEH 261 (337)
T ss_dssp -HHHHHHHHHCCC-------CCCTTSCHHHHHHHHHHTCSSTTTSTTCSTTTHHHHHTS
T ss_pred -HHHHHHHHcCCC-------CCCCCCCHHHHHHHHHHhhcCHHHhcCCCCCCHHHHHcC
Confidence 111111111111 11223456788999999999999999 89998765
No 67
>4eqm_A Protein kinase; transferase; HET: ANP; 3.00A {Staphylococcus aureus subsp}
Probab=100.00 E-value=7e-40 Score=345.27 Aligned_cols=262 Identities=21% Similarity=0.339 Sum_probs=207.5
Q ss_pred cCCccCceeccCcceEEEEEEECCCceEEEEEEeeccCCc---chhHHHHHHHHHhhcCCCccceEeeEeecCCCCCCce
Q 040925 531 GEFSSSNMIGQGSFGYVYKGTLGEDEMIVAVKVINLKYKG---ASRSFVAECEALRNIRHRNLIKIITICSSTDFKGTDF 607 (833)
Q Consensus 531 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~---~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~ 607 (833)
++|++.+.||+|+||.||+|++..+++.||+|++...... ..+.+.+|+.++++++||||+++++++...+ .
T Consensus 11 ~~y~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~~-----~ 85 (294)
T 4eqm_A 11 ERYKIVDKLGGGGMSTVYLAEDTILNIKVAIKAIFIPPREKEETLKRFEREVHNSSQLSHQNIVSMIDVDEEDD-----C 85 (294)
T ss_dssp TTEEEEEEEEEETTEEEEEEEETTTCSEEEEEEEECCSSCCHHHHHHHHHHHHHHTTCCBTTBCCEEEEEECSS-----E
T ss_pred ccEEEEEEEccCCCEEEEEEEECCCCCeEEEEEeccCccccHHHHHHHHHHHHHHhcCCCCCCceEEEeeeeCC-----e
Confidence 5799999999999999999999999999999998644322 2467899999999999999999999976554 8
Q ss_pred EeEEEEecCCCChhhhhccCCCccccccCCHHHHHHHHHHHHHHHHHHhhcCCCCceeeCCCCCCeeecCCCcEEEcccc
Q 040925 608 KAFVFEYMENGSLKDWLHQSDDQVEVCKLSLIQRVNIAIDVASAMEYLHHHCQPPMVHGDLKPSNVLLDHDMVAHVCDFG 687 (833)
Q Consensus 608 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~gL~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kL~DfG 687 (833)
.++||||+++|+|.+++.... .+++..++.++.|++.||+|||+. +|+||||||+||+++.++.+||+|||
T Consensus 86 ~~lv~e~~~g~~L~~~l~~~~------~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~Dlkp~Nil~~~~~~~kl~Dfg 156 (294)
T 4eqm_A 86 YYLVMEYIEGPTLSEYIESHG------PLSVDTAINFTNQILDGIKHAHDM---RIVHRDIKPQNILIDSNKTLKIFDFG 156 (294)
T ss_dssp EEEEEECCCSCBHHHHHHHHC------SCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTSCEEECCCS
T ss_pred EEEEEeCCCCCCHHHHHHhcC------CCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEEECCCCCEEEEeCC
Confidence 999999999999999998654 689999999999999999999999 99999999999999999999999999
Q ss_pred cccccCcccccccccCCCccccccccccccCccccCCCCCCcccccccCCcCCCccccCCccHHHHHHHhCCCccccccc
Q 040925 688 LAKFLSDHQLDTAVKTPSSSIGLKGTVGYVAPEYGMGSEASMTGDIFTGRRPIDAVFNEGHSLHEFAKTALPEKVMEIVD 767 (833)
Q Consensus 688 ~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~s~~~~~~~~~~~g~~l~~~~~~~~p~~~~~~~~ 767 (833)
+++........ ......||+.|+|||++.+..++.++|||| .|+++++++++..|+......+
T Consensus 157 ~~~~~~~~~~~-------~~~~~~gt~~y~aPE~~~~~~~~~~~Di~s----------lG~~l~~ll~g~~pf~~~~~~~ 219 (294)
T 4eqm_A 157 IAKALSETSLT-------QTNHVLGTVQYFSPEQAKGEATDECTDIYS----------IGIVLYEMLVGEPPFNGETAVS 219 (294)
T ss_dssp SSTTC--------------------CCSSCCHHHHHTCCCCTTHHHHH----------HHHHHHHHHHSSCSSCSSCHHH
T ss_pred Ccccccccccc-------ccCccccCccccCHhHhcCCCCCchHhHHH----------HHHHHHHHHhCCCCCCCCChHH
Confidence 99876543211 122356999999999999999999999999 8889999999999876322111
Q ss_pred ccchhhhccccchhhhhhhhchHHHHHHHHHHhhccCCCCCCCCC-CHHHHHHHHHHhhhh
Q 040925 768 PSLLMEVMTNNSMIQEDKRVKTEECLNAIIRTGVLCSMESPFERM-DMRDVVAKLCHTRET 827 (833)
Q Consensus 768 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RP-t~~eil~~L~~i~~~ 827 (833)
. ......... .........++++.+.+++.+||+.||++|| +++++.+.|+.+...
T Consensus 220 ~--~~~~~~~~~--~~~~~~~~~~~~~~l~~li~~~l~~dp~~R~~~~~~l~~~l~~~~~~ 276 (294)
T 4eqm_A 220 I--AIKHIQDSV--PNVTTDVRKDIPQSLSNVILRATEKDKANRYKTIQEMKDDLSSVLHE 276 (294)
T ss_dssp H--HHHHHSSCC--CCHHHHSCTTSCHHHHHHHHHHSCSSGGGSCSSHHHHHHHHHTSSSS
T ss_pred H--HHHHhhccC--CCcchhcccCCCHHHHHHHHHHhcCCHhHccccHHHHHHHHHHHHhh
Confidence 1 111111111 0011112234567889999999999999999 899999999887643
No 68
>4dc2_A Protein kinase C IOTA type; kinase, substrate, cell polarity, atypical PKC, trans transferase substrate complex; HET: TPO ADE; 2.40A {Mus musculus}
Probab=100.00 E-value=1.1e-39 Score=355.08 Aligned_cols=247 Identities=21% Similarity=0.280 Sum_probs=198.9
Q ss_pred hcCCccCceeccCcceEEEEEEECCCceEEEEEEeeccC---CcchhHHHHHHHHHhhc-CCCccceEeeEeecCCCCCC
Q 040925 530 TGEFSSSNMIGQGSFGYVYKGTLGEDEMIVAVKVINLKY---KGASRSFVAECEALRNI-RHRNLIKIITICSSTDFKGT 605 (833)
Q Consensus 530 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l-~h~niv~~~~~~~~~~~~~~ 605 (833)
.++|++.+.||+|+||.||+|+++.+++.||+|+++... ....+.+.+|..+++++ +||||+++++++...+
T Consensus 51 ~~~y~~~~~LG~G~fG~V~~~~~~~~~~~~AvK~~~k~~~~~~~~~~~~~~E~~il~~~~~hp~Iv~l~~~~~~~~---- 126 (396)
T 4dc2_A 51 LQDFDLLRVIGRGSYAKVLLVRLKKTDRIYAMRVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQTES---- 126 (396)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEGGGTC----CCHHHHHHHHHHHHTTCTTBCCEEEEEECSS----
T ss_pred hhHcEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhhhccCHHHHHHHHHHHHHHHhcCCCCCcCeeEEEEEECC----
Confidence 468999999999999999999999999999999997542 23345688999999887 8999999999976554
Q ss_pred ceEeEEEEecCCCChhhhhccCCCccccccCCHHHHHHHHHHHHHHHHHHhhcCCCCceeeCCCCCCeeecCCCcEEEcc
Q 040925 606 DFKAFVFEYMENGSLKDWLHQSDDQVEVCKLSLIQRVNIAIDVASAMEYLHHHCQPPMVHGDLKPSNVLLDHDMVAHVCD 685 (833)
Q Consensus 606 ~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~gL~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kL~D 685 (833)
..++||||+++|+|.+++...+ .+++..++.++.||+.||+|||+. +|+||||||+||+++.++.+||+|
T Consensus 127 -~~~lV~E~~~gg~L~~~l~~~~------~l~~~~~~~~~~qi~~aL~~LH~~---givHrDLKp~NILl~~~g~ikL~D 196 (396)
T 4dc2_A 127 -RLFFVIEYVNGGDLMFHMQRQR------KLPEEHARFYSAEISLALNYLHER---GIIYRDLKLDNVLLDSEGHIKLTD 196 (396)
T ss_dssp -EEEEEEECCTTCBHHHHHHHHS------SCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCCGGGEEECTTSCEEECC
T ss_pred -EEEEEEEcCCCCcHHHHHHHcC------CCCHHHHHHHHHHHHHHHHHHHHC---CEEeccCCHHHEEECCCCCEEEee
Confidence 8999999999999999998654 699999999999999999999999 999999999999999999999999
Q ss_pred cccccccCcccccccccCCCccccccccccccCccccCCCCCCcccccccCCcCCCccccCCccHHHHHHHhCCCccccc
Q 040925 686 FGLAKFLSDHQLDTAVKTPSSSIGLKGTVGYVAPEYGMGSEASMTGDIFTGRRPIDAVFNEGHSLHEFAKTALPEKVMEI 765 (833)
Q Consensus 686 fG~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~s~~~~~~~~~~~g~~l~~~~~~~~p~~~~~~ 765 (833)
||+|+...... ......+||+.|+|||++.+..++.++|||| .|+++|+++++..|+.....
T Consensus 197 FGla~~~~~~~--------~~~~~~~gt~~Y~aPE~l~~~~~~~~~Diws----------lGvllyell~G~~Pf~~~~~ 258 (396)
T 4dc2_A 197 YGMCKEGLRPG--------DTTSTFCGTPNYIAPEILRGEDYGFSVDWWA----------LGVLMFEMMAGRSPFDIVGS 258 (396)
T ss_dssp CTTCBCCCCTT--------CCBCCCCBCGGGCCHHHHTTCCBCTHHHHHH----------HHHHHHHHHHSSCSSTTTTC
T ss_pred cceeeecccCC--------CccccccCCcccCCchhhcCCCCChHHHHHH----------HHHHHHHHHhCCCCCccccc
Confidence 99998532211 1223467999999999999999999999999 88999999999999853211
Q ss_pred ccc------cchhhhccccchhhhhhhhchHHHHHHHHHHhhccCCCCCCCCCCH
Q 040925 766 VDP------SLLMEVMTNNSMIQEDKRVKTEECLNAIIRTGVLCSMESPFERMDM 814 (833)
Q Consensus 766 ~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~ 814 (833)
.+. ......+.. .....+..++..+.+++.+||+.||++||++
T Consensus 259 ~~~~~~~~~~~~~~~i~~------~~~~~p~~~s~~~~~li~~lL~~dP~~R~~~ 307 (396)
T 4dc2_A 259 SDNPDQNTEDYLFQVILE------KQIRIPRSLSVKAASVLKSFLNKDPKERLGC 307 (396)
T ss_dssp ------CCHHHHHHHHHH------CCCCCCTTSCHHHHHHHHHHTCSCTTTSTTC
T ss_pred ccccchhhHHHHHHHHhc------cccCCCCcCCHHHHHHHHHHhcCCHhHcCCC
Confidence 110 000110000 0011122345678899999999999999996
No 69
>2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A
Probab=100.00 E-value=1.1e-39 Score=354.82 Aligned_cols=267 Identities=22% Similarity=0.363 Sum_probs=209.1
Q ss_pred hcCCccCceeccCcceEEEEEEEC-------CCceEEEEEEeeccCC-cchhHHHHHHHHHhhc-CCCccceEeeEeecC
Q 040925 530 TGEFSSSNMIGQGSFGYVYKGTLG-------EDEMIVAVKVINLKYK-GASRSFVAECEALRNI-RHRNLIKIITICSST 600 (833)
Q Consensus 530 ~~~y~~~~~lg~G~~g~Vy~~~~~-------~~~~~vavK~~~~~~~-~~~~~~~~E~~~l~~l-~h~niv~~~~~~~~~ 600 (833)
.++|++.+.||+|+||.||+|++. .++..||||+++.... ...+.+.+|+++++++ +||||+++++++...
T Consensus 80 ~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hpnIv~~~~~~~~~ 159 (370)
T 2psq_A 80 RDKLTLGKPLGEGCFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGACTQD 159 (370)
T ss_dssp GGGEEEEEEESCCSSSEEEEEEEETCSTTCTTCEEEEEEEECCTTCBHHHHHHHHHHHHHHHHSCCCTTBCCEEEEECSS
T ss_pred HHHCEeeeEEeeCCCeeEEEEEEecccCcCcCcceeEEEEEecCCcCHHHHHHHHHHHHHHHHhcCCCCEeeEEEEEccC
Confidence 468999999999999999999874 3567899999975432 2346789999999999 899999999997654
Q ss_pred CCCCCceEeEEEEecCCCChhhhhccCCCc----------cccccCCHHHHHHHHHHHHHHHHHHhhcCCCCceeeCCCC
Q 040925 601 DFKGTDFKAFVFEYMENGSLKDWLHQSDDQ----------VEVCKLSLIQRVNIAIDVASAMEYLHHHCQPPMVHGDLKP 670 (833)
Q Consensus 601 ~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~----------~~~~~l~~~~~~~i~~qi~~gL~~LH~~~~~~ivH~Dlkp 670 (833)
+ ..|+||||+++|+|.+++...... .....+++.+++.++.||+.||+|||+. +|+||||||
T Consensus 160 ~-----~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivHrDlkp 231 (370)
T 2psq_A 160 G-----PLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLASQ---KCIHRDLAA 231 (370)
T ss_dssp S-----SCEEEEECCTTCBHHHHHHHTCCC-----------CCCCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCG
T ss_pred C-----CEEEEEEcCCCCCHHHHHHhhCCccccccccccccccccCCHHHHHHHHHHHHHHHHHHHhC---Ceeccccch
Confidence 4 789999999999999999875421 0112589999999999999999999999 999999999
Q ss_pred CCeeecCCCcEEEcccccccccCcccccccccCCCccccccccccccCccccCCCCCCcccccccCCcCCCccccCCccH
Q 040925 671 SNVLLDHDMVAHVCDFGLAKFLSDHQLDTAVKTPSSSIGLKGTVGYVAPEYGMGSEASMTGDIFTGRRPIDAVFNEGHSL 750 (833)
Q Consensus 671 ~NIll~~~~~~kL~DfG~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~s~~~~~~~~~~~g~~l 750 (833)
+||+++.++.+||+|||+|+........ .......||+.|+|||++.+..++.++|||| +|+++
T Consensus 232 ~NIll~~~~~~kl~DFG~a~~~~~~~~~------~~~~~~~~t~~y~aPE~~~~~~~~~~~Dvws----------lG~il 295 (370)
T 2psq_A 232 RNVLVTENNVMKIADFGLARDINNIDYY------KKTTNGRLPVKWMAPEALFDRVYTHQSDVWS----------FGVLM 295 (370)
T ss_dssp GGEEECTTCCEEECCCSSCEETTCCCTT------CTTTTTTSCGGGCCHHHHHTCCCCHHHHHHH----------HHHHH
T ss_pred hhEEECCCCCEEEccccCCcccCcccce------ecccCCCcccceECHhHhcCCCCCcHHHHHH----------HHHHH
Confidence 9999999999999999999866543211 1112245789999999999999999999999 77888
Q ss_pred HHHHH-HhCCCcccccccccchhhhccccchhhhhhhhchHHHHHHHHHHhhccCCCCCCCCCCHHHHHHHHHHhhhhh
Q 040925 751 HEFAK-TALPEKVMEIVDPSLLMEVMTNNSMIQEDKRVKTEECLNAIIRTGVLCSMESPFERMDMRDVVAKLCHTRETF 828 (833)
Q Consensus 751 ~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~i~~~~ 828 (833)
|++++ +..|+..... ... ........ ....+..++..+.+++.+||+.||++|||+.|+++.|+.+....
T Consensus 296 ~ellt~g~~p~~~~~~--~~~-~~~~~~~~-----~~~~~~~~~~~l~~li~~~l~~dP~~Rpt~~ell~~L~~il~~~ 366 (370)
T 2psq_A 296 WEIFTLGGSPYPGIPV--EEL-FKLLKEGH-----RMDKPANCTNELYMMMRDCWHAVPSQRPTFKQLVEDLDRILTLT 366 (370)
T ss_dssp HHHHTTSCCSSTTCCG--GGH-HHHHHTTC-----CCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCCCCCCCCH--HHH-HHHHhcCC-----CCCCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHHh
Confidence 88887 7777642211 111 11111110 01122345668899999999999999999999999999987643
No 70
>3h4j_B AMPK kdaid, SNF1-like protein kinase SSP2; ATP-binding, nucleotide-binding, phosphoprotei serine/threonine-protein kinase, transferase; 2.80A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.4e-39 Score=347.83 Aligned_cols=248 Identities=25% Similarity=0.359 Sum_probs=202.6
Q ss_pred hcCCccCceeccCcceEEEEEEECCCceEEEEEEeecc---CCcchhHHHHHHHHHhhcCCCccceEeeEeecCCCCCCc
Q 040925 530 TGEFSSSNMIGQGSFGYVYKGTLGEDEMIVAVKVINLK---YKGASRSFVAECEALRNIRHRNLIKIITICSSTDFKGTD 606 (833)
Q Consensus 530 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~---~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~ 606 (833)
.++|.+.+.||+|+||.||+|++..+++.||||++... .......+.+|+++++.++||||+++++++....
T Consensus 8 i~~Y~i~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~----- 82 (336)
T 3h4j_B 8 IGPYIIRETLGEGSFGKVKLATHYKTQQKVALKFISRQLLKKSDMHMRVEREISYLKLLRHPHIIKLYDVITTPT----- 82 (336)
T ss_dssp ETTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCSHHHHHHHHHHTTCCCTTBCCEEEEEECSS-----
T ss_pred cCCEEEEEEEecCCCeEEEEEEECCCCCEEEEEEEehHHccchhHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCC-----
Confidence 46899999999999999999999999999999999643 1233467899999999999999999999976655
Q ss_pred eEeEEEEecCCCChhhhhccCCCccccccCCHHHHHHHHHHHHHHHHHHhhcCCCCceeeCCCCCCeeecCCCcEEEccc
Q 040925 607 FKAFVFEYMENGSLKDWLHQSDDQVEVCKLSLIQRVNIAIDVASAMEYLHHHCQPPMVHGDLKPSNVLLDHDMVAHVCDF 686 (833)
Q Consensus 607 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~gL~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kL~Df 686 (833)
..++||||+ +|+|.+++.... .+++.+++.++.|++.||+|||+. ||+||||||+||+++.++.+||+||
T Consensus 83 ~~~lv~E~~-~g~l~~~l~~~~------~l~~~~~~~i~~qi~~aL~~LH~~---givH~Dlkp~NIll~~~~~~kl~DF 152 (336)
T 3h4j_B 83 DIVMVIEYA-GGELFDYIVEKK------RMTEDEGRRFFQQIICAIEYCHRH---KIVHRDLKPENLLLDDNLNVKIADF 152 (336)
T ss_dssp EEEEEECCC-CEEHHHHHHHHC------SCCHHHHHHHHHHHHHHHHHHHHH---TCCCCCCSTTTEEECTTCCEEECCS
T ss_pred EEEEEEECC-CCcHHHHHHHcC------CCCHHHHHHHHHHHHHHHHHHHHC---CeEecCCchhhEEEcCCCCEEEEEe
Confidence 899999999 679999987654 689999999999999999999999 9999999999999999999999999
Q ss_pred ccccccCcccccccccCCCccccccccccccCccccCCCCC-CcccccccCCcCCCccccCCccHHHHHHHhCCCccccc
Q 040925 687 GLAKFLSDHQLDTAVKTPSSSIGLKGTVGYVAPEYGMGSEA-SMTGDIFTGRRPIDAVFNEGHSLHEFAKTALPEKVMEI 765 (833)
Q Consensus 687 G~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~-~~~~Di~s~~~~~~~~~~~g~~l~~~~~~~~p~~~~~~ 765 (833)
|++........ ....+||+.|+|||++.+..+ +.++|||| .|+++++++++..|+.....
T Consensus 153 G~s~~~~~~~~---------~~~~~gt~~y~aPE~~~~~~~~~~~~Diws----------lG~il~~ll~g~~Pf~~~~~ 213 (336)
T 3h4j_B 153 GLSNIMTDGNF---------LKTSCGSPNYAAPEVINGKLYAGPEVDVWS----------CGIVLYVMLVGRLPFDDEFI 213 (336)
T ss_dssp SCTBTTTTSBT---------TCCCTTSTTTSCGGGSCCSGGGCHHHHHHH----------HHHHHHHHHHSSCSSBCSSS
T ss_pred ccceeccCCcc---------cccccCCcCcCCHHHHcCCCCCCCccchhH----------HHHHHHHHHhCCCCCCCccH
Confidence 99986644321 123469999999999988776 68999999 88899999999999763211
Q ss_pred ccccchhhhccccchhhhhhhhchHHHHHHHHHHhhccCCCCCCCCCCHHHHHHH
Q 040925 766 VDPSLLMEVMTNNSMIQEDKRVKTEECLNAIIRTGVLCSMESPFERMDMRDVVAK 820 (833)
Q Consensus 766 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~ 820 (833)
+.......... ...+...++.+.+++.+||..||++|||++|+++.
T Consensus 214 --~~~~~~i~~~~-------~~~p~~~s~~~~~li~~~L~~dP~~Rpt~~eil~h 259 (336)
T 3h4j_B 214 --PNLFKKVNSCV-------YVMPDFLSPGAQSLIRRMIVADPMQRITIQEIRRD 259 (336)
T ss_dssp --TTCBCCCCSSC-------CCCCTTSCHHHHHHHHTTSCSSGGGSCCHHHHTTC
T ss_pred --HHHHHHHHcCC-------CCCcccCCHHHHHHHHHHcCCChhHCcCHHHHHhC
Confidence 11111111110 01122345678899999999999999999999764
No 71
>4hcu_A Tyrosine-protein kinase ITK/TSK; transferase-transferase inhibitor complex; HET: 13L; 1.43A {Homo sapiens} PDB: 4hct_A* 4hcv_A* 3t9t_A* 1sm2_A* 1snu_A* 1snx_A 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*
Probab=100.00 E-value=1.1e-39 Score=339.53 Aligned_cols=258 Identities=25% Similarity=0.392 Sum_probs=207.2
Q ss_pred hcCCccCceeccCcceEEEEEEECCCceEEEEEEeeccCCcchhHHHHHHHHHhhcCCCccceEeeEeecCCCCCCceEe
Q 040925 530 TGEFSSSNMIGQGSFGYVYKGTLGEDEMIVAVKVINLKYKGASRSFVAECEALRNIRHRNLIKIITICSSTDFKGTDFKA 609 (833)
Q Consensus 530 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~~ 609 (833)
.++|++.+.||+|+||.||+|++. +++.||+|+++... ...+.+.+|++++++++||||+++++++.+.. ..+
T Consensus 9 ~~~y~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~-----~~~ 81 (269)
T 4hcu_A 9 PSELTFVQEIGSGQFGLVHLGYWL-NKDKVAIKTIREGA-MSEEDFIEEAEVMMKLSHPKLVQLYGVCLEQA-----PIC 81 (269)
T ss_dssp GGGEEEEEEEEECSSCEEEEEEET-TTEEEEEEEECTTS-BCHHHHHHHHHHHHTCCCTTBCCEEEEECSSS-----SEE
T ss_pred hhhceeeheecCCCccEEEEEEec-CCCeEEEEEecccc-cCHHHHHHHHHHHHhCCCCCEeeEEEEEecCC-----ceE
Confidence 357999999999999999999997 57789999997443 34567999999999999999999999976544 789
Q ss_pred EEEEecCCCChhhhhccCCCccccccCCHHHHHHHHHHHHHHHHHHhhcCCCCceeeCCCCCCeeecCCCcEEEcccccc
Q 040925 610 FVFEYMENGSLKDWLHQSDDQVEVCKLSLIQRVNIAIDVASAMEYLHHHCQPPMVHGDLKPSNVLLDHDMVAHVCDFGLA 689 (833)
Q Consensus 610 lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~gL~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kL~DfG~a 689 (833)
+||||+++|+|.+++..... .+++..++.++.|++.||+|||+. +|+||||||+||+++.++.+||+|||++
T Consensus 82 lv~e~~~~~~L~~~l~~~~~-----~~~~~~~~~i~~~i~~~l~~lH~~---~i~H~dikp~Nil~~~~~~~kl~Dfg~~ 153 (269)
T 4hcu_A 82 LVFEFMEHGCLSDYLRTQRG-----LFAAETLLGMCLDVCEGMAYLEEA---CVIHRDLAARNCLVGENQVIKVSDFGMT 153 (269)
T ss_dssp EEEECCTTCBHHHHHHTTTT-----CCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECGGGCEEECCTTGG
T ss_pred EEEEeCCCCcHHHHHHhcCc-----ccCHHHHHHHHHHHHHHHHHHHhC---CeecCCcchheEEEcCCCCEEecccccc
Confidence 99999999999999976542 589999999999999999999999 9999999999999999999999999999
Q ss_pred cccCcccccccccCCCccccccccccccCccccCCCCCCcccccccCCcCCCccccCCccHHHHHH-HhCCCcccccccc
Q 040925 690 KFLSDHQLDTAVKTPSSSIGLKGTVGYVAPEYGMGSEASMTGDIFTGRRPIDAVFNEGHSLHEFAK-TALPEKVMEIVDP 768 (833)
Q Consensus 690 ~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~s~~~~~~~~~~~g~~l~~~~~-~~~p~~~~~~~~~ 768 (833)
+......... .....||+.|+|||++.+..++.++|||| .|++++++++ +..|+..... .
T Consensus 154 ~~~~~~~~~~-------~~~~~~~~~y~aPE~~~~~~~~~~~Di~s----------lG~~l~~ll~~g~~p~~~~~~--~ 214 (269)
T 4hcu_A 154 RFVLDDQYTS-------STGTKFPVKWASPEVFSFSRYSSKSDVWS----------FGVLMWEVFSEGKIPYENRSN--S 214 (269)
T ss_dssp GGBCCHHHHS-------TTSTTCCGGGCCHHHHHHCCCCHHHHHHH----------HHHHHHHHHTTSCCTTTTCCH--H
T ss_pred cccccccccc-------ccCcccccccCCHHHhcCCCCCchhhhHH----------HHHHHHHHhcCCCCCCCCCCH--H
Confidence 8765433211 11235788999999999889999999999 7778888887 6777652211 1
Q ss_pred cchhhhccccchhhhhhhhchHHHHHHHHHHhhccCCCCCCCCCCHHHHHHHHHHhhhh
Q 040925 769 SLLMEVMTNNSMIQEDKRVKTEECLNAIIRTGVLCSMESPFERMDMRDVVAKLCHTRET 827 (833)
Q Consensus 769 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~i~~~ 827 (833)
.......... ....+..+++.+.+++.+||+.||++|||++|++++|+++.+.
T Consensus 215 ~~~~~~~~~~------~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~ll~~l~~l~~~ 267 (269)
T 4hcu_A 215 EVVEDISTGF------RLYKPRLASTHVYQIMNHCWRERPEDRPAFSRLLRQLAEIAES 267 (269)
T ss_dssp HHHHHHHTTC------CCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHC
T ss_pred HHHHHHhcCc------cCCCCCcCCHHHHHHHHHHccCCcccCcCHHHHHHHHHHHHHc
Confidence 1111111100 0111122356788999999999999999999999999999764
No 72
>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A*
Probab=100.00 E-value=3e-40 Score=360.66 Aligned_cols=262 Identities=24% Similarity=0.347 Sum_probs=207.7
Q ss_pred HhcCCccCceeccCcceEEEEEEECCCceEEEEEEeeccCC-cchhHHHHHHHHHhhcCCCccceEeeEeecCCCCCCce
Q 040925 529 ATGEFSSSNMIGQGSFGYVYKGTLGEDEMIVAVKVINLKYK-GASRSFVAECEALRNIRHRNLIKIITICSSTDFKGTDF 607 (833)
Q Consensus 529 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~-~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~ 607 (833)
..++|++.+.||+|+||.||+|++..+++.||||+++.... ...+.+.+|++++++++||||+++++++...+ .
T Consensus 112 ~~~~~~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~-----~ 186 (377)
T 3cbl_A 112 NHEDLVLGEQIGRGNFGEVFSGRLRADNTLVAVKSCRETLPPDLKAKFLQEARILKQYSHPNIVRLIGVCTQKQ-----P 186 (377)
T ss_dssp CGGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEECCTTSCHHHHTTTTHHHHHHTTCCCTTBCCEEEEECSSS-----S
T ss_pred chHHeEEeeEeccCCCCeEEEEEEecCCeEEEEEEccccCCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEecCC-----C
Confidence 34689999999999999999999998999999999974422 23457889999999999999999999976544 7
Q ss_pred EeEEEEecCCCChhhhhccCCCccccccCCHHHHHHHHHHHHHHHHHHhhcCCCCceeeCCCCCCeeecCCCcEEEcccc
Q 040925 608 KAFVFEYMENGSLKDWLHQSDDQVEVCKLSLIQRVNIAIDVASAMEYLHHHCQPPMVHGDLKPSNVLLDHDMVAHVCDFG 687 (833)
Q Consensus 608 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~gL~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kL~DfG 687 (833)
.++||||+++|+|.+++..... .+++.+++.++.|++.||+|||+. +|+||||||+||+++.++.+||+|||
T Consensus 187 ~~lv~e~~~~g~L~~~l~~~~~-----~~~~~~~~~~~~qi~~~l~~LH~~---~ivHrDlkp~Nil~~~~~~~kl~DfG 258 (377)
T 3cbl_A 187 IYIVMELVQGGDFLTFLRTEGA-----RLRVKTLLQMVGDAAAGMEYLESK---CCIHRDLAARNCLVTEKNVLKISDFG 258 (377)
T ss_dssp CEEEEECCTTCBHHHHHHHHGG-----GCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTCCEEECCGG
T ss_pred cEEEEEcCCCCCHHHHHHhcCC-----CCCHHHHHHHHHHHHHHHHHHHHC---CcCCcccCHHHEEEcCCCcEEECcCC
Confidence 8999999999999999975432 589999999999999999999999 99999999999999999999999999
Q ss_pred cccccCcccccccccCCCccccccccccccCccccCCCCCCcccccccCCcCCCccccCCccHHHHHH-HhCCCcccccc
Q 040925 688 LAKFLSDHQLDTAVKTPSSSIGLKGTVGYVAPEYGMGSEASMTGDIFTGRRPIDAVFNEGHSLHEFAK-TALPEKVMEIV 766 (833)
Q Consensus 688 ~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~s~~~~~~~~~~~g~~l~~~~~-~~~p~~~~~~~ 766 (833)
+++.......... .....+++.|+|||++.+..++.++|||| +|++++++++ +..|+.....
T Consensus 259 ~s~~~~~~~~~~~------~~~~~~~~~y~aPE~~~~~~~~~~~Dvws----------lG~il~el~t~g~~p~~~~~~- 321 (377)
T 3cbl_A 259 MSREEADGVYAAS------GGLRQVPVKWTAPEALNYGRYSSESDVWS----------FGILLWETFSLGASPYPNLSN- 321 (377)
T ss_dssp GCEECTTSEEECC------SSCCEEEGGGSCHHHHHHCEEEHHHHHHH----------HHHHHHHHHTTSCCSSTTSCH-
T ss_pred CceecCCCceeec------CCCCCCCcCcCCHhHhccCCCCchhhHHH----------HHHHHHHHHhCCCCCCCCCCH-
Confidence 9986543221110 01123678899999999889999999999 7777888876 6666542211
Q ss_pred cccchhhhccccchhhhhhhhchHHHHHHHHHHhhccCCCCCCCCCCHHHHHHHHHHhhhh
Q 040925 767 DPSLLMEVMTNNSMIQEDKRVKTEECLNAIIRTGVLCSMESPFERMDMRDVVAKLCHTRET 827 (833)
Q Consensus 767 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~i~~~ 827 (833)
....+.+.... ....+..+++.+.+++.+||+.||++|||++++++.|+++.+.
T Consensus 322 --~~~~~~~~~~~-----~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~~i~~~L~~i~~~ 375 (377)
T 3cbl_A 322 --QQTREFVEKGG-----RLPCPELCPDAVFRLMEQCWAYEPGQRPSFSTIYQELQSIRKR 375 (377)
T ss_dssp --HHHHHHHHTTC-----CCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHcCC-----CCCCCCCCCHHHHHHHHHHcCCCchhCcCHHHHHHHHHHHHhh
Confidence 11111111100 0111233566789999999999999999999999999998764
No 73
>3tki_A Serine/threonine-protein kinase CHK1; cell checkpoint, transferase-transferase inhib complex; HET: S25; 1.60A {Homo sapiens} PDB: 2qhm_A* 2r0u_A* 3tkh_A* 2qhn_A* 2hy0_A* 2hog_A* 2hxq_A* 2hxl_A* 3f9n_A*
Probab=100.00 E-value=1.7e-39 Score=346.87 Aligned_cols=255 Identities=21% Similarity=0.263 Sum_probs=202.8
Q ss_pred hcCCccCceeccCcceEEEEEEECCCceEEEEEEeeccCC-cchhHHHHHHHHHhhcCCCccceEeeEeecCCCCCCceE
Q 040925 530 TGEFSSSNMIGQGSFGYVYKGTLGEDEMIVAVKVINLKYK-GASRSFVAECEALRNIRHRNLIKIITICSSTDFKGTDFK 608 (833)
Q Consensus 530 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~-~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~ 608 (833)
.++|++.+.||+|+||.||+|++..+++.||||+++.... ...+.+.+|+.+++.++||||+++++++.... ..
T Consensus 6 ~~~y~i~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~-----~~ 80 (323)
T 3tki_A 6 VEDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHENVVKFYGHRREGN-----IQ 80 (323)
T ss_dssp TTCEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECC-------CHHHHHHHHHHCCCTTBCCEEEEEECSS-----EE
T ss_pred hhhceeeeEEecCCCEEEEEEEECCCCcEEEEEEEEcccccchHHHHHHHHHHHHhCCCCCCCeEEEEEecCC-----eE
Confidence 4689999999999999999999999999999999964432 23467899999999999999999999976654 88
Q ss_pred eEEEEecCCCChhhhhccCCCccccccCCHHHHHHHHHHHHHHHHHHhhcCCCCceeeCCCCCCeeecCCCcEEEccccc
Q 040925 609 AFVFEYMENGSLKDWLHQSDDQVEVCKLSLIQRVNIAIDVASAMEYLHHHCQPPMVHGDLKPSNVLLDHDMVAHVCDFGL 688 (833)
Q Consensus 609 ~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~gL~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kL~DfG~ 688 (833)
++||||+++|+|.+++.... .+++.+++.++.|++.||+|||+. ||+||||||+||+++.++.+||+|||+
T Consensus 81 ~lv~e~~~~~~L~~~l~~~~------~~~~~~~~~i~~qi~~aL~~LH~~---givH~Dlkp~NIll~~~~~~kl~Dfg~ 151 (323)
T 3tki_A 81 YLFLEYCSGGELFDRIEPDI------GMPEPDAQRFFHQLMAGVVYLHGI---GITHRDIKPENLLLDERDNLKISDFGL 151 (323)
T ss_dssp EEEEECCTTEEGGGGSBTTT------BCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTCCEEECCCTT
T ss_pred EEEEEcCCCCcHHHHHhhcC------CCCHHHHHHHHHHHHHHHHHHHHC---CccccccchHHEEEeCCCCEEEEEeec
Confidence 99999999999999998654 689999999999999999999999 999999999999999999999999999
Q ss_pred ccccCcccccccccCCCccccccccccccCccccCCCCC-CcccccccCCcCCCccccCCccHHHHHHHhCCCccccccc
Q 040925 689 AKFLSDHQLDTAVKTPSSSIGLKGTVGYVAPEYGMGSEA-SMTGDIFTGRRPIDAVFNEGHSLHEFAKTALPEKVMEIVD 767 (833)
Q Consensus 689 a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~-~~~~Di~s~~~~~~~~~~~g~~l~~~~~~~~p~~~~~~~~ 767 (833)
++......... ......||+.|+|||++.+..+ +.++|||| .|+++++++++..|+.......
T Consensus 152 a~~~~~~~~~~------~~~~~~gt~~y~aPE~~~~~~~~~~~~Diws----------lG~il~~ll~g~~pf~~~~~~~ 215 (323)
T 3tki_A 152 ATVFRYNNRER------LLNKMCGTLPYVAPELLKRREFHAEPVDVWS----------CGIVLTAMLAGELPWDQPSDSC 215 (323)
T ss_dssp CEECEETTEEC------CBCSCCSCGGGSCHHHHHCSSBCHHHHHHHH----------HHHHHHHHHHSSCSCSSSCTTS
T ss_pred cceeccCCccc------ccCCCccCcCccCcHHhccCCCCCCcccHHH----------HHHHHHHHHhCCCCCCCCchHH
Confidence 98654322111 1223579999999999887775 78899999 8889999999999986332211
Q ss_pred ccchhhhccccchhhhhhhhchHHHHHHHHHHhhccCCCCCCCCCCHHHHHHH
Q 040925 768 PSLLMEVMTNNSMIQEDKRVKTEECLNAIIRTGVLCSMESPFERMDMRDVVAK 820 (833)
Q Consensus 768 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~ 820 (833)
... ......... ......++..+.+++.+||..||++|||++|+++.
T Consensus 216 ~~~-~~~~~~~~~-----~~~~~~~~~~~~~li~~~L~~dP~~R~t~~eil~h 262 (323)
T 3tki_A 216 QEY-SDWKEKKTY-----LNPWKKIDSAPLALLHKILVENPSARITIPDIKKD 262 (323)
T ss_dssp HHH-HHHHTTCTT-----STTGGGSCHHHHHHHHHHSCSSTTTSCCHHHHTTC
T ss_pred HHH-HHHhccccc-----CCccccCCHHHHHHHHHHccCChhhCcCHHHHhhC
Confidence 111 111111110 01112345677899999999999999999999764
No 74
>1tki_A Titin; serine kinase, muscle, autoinhibition; 2.00A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=1.9e-39 Score=345.85 Aligned_cols=253 Identities=18% Similarity=0.232 Sum_probs=206.1
Q ss_pred hcCCccCceeccCcceEEEEEEECCCceEEEEEEeeccCCcchhHHHHHHHHHhhcCCCccceEeeEeecCCCCCCceEe
Q 040925 530 TGEFSSSNMIGQGSFGYVYKGTLGEDEMIVAVKVINLKYKGASRSFVAECEALRNIRHRNLIKIITICSSTDFKGTDFKA 609 (833)
Q Consensus 530 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~~ 609 (833)
.++|++.+.||+|+||.||+|++..+++.||+|.++.. ......+.+|+++++.++||||+++++++.+.+ ..+
T Consensus 4 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~a~K~~~~~-~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~-----~~~ 77 (321)
T 1tki_A 4 YEKYMIAEDLGRGEFGIVHRCVETSSKKTYMAKFVKVK-GTDQVLVKKEISILNIARHRNILHLHESFESME-----ELV 77 (321)
T ss_dssp TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCC-THHHHHHHHHHHHHHHSCCTTBCCEEEEEEETT-----EEE
T ss_pred hhceEeeeEEecCCCeEEEEEEECCCCcEEEEEEEecC-cccHHHHHHHHHHHHhCCCCCCCeEeEEEecCC-----EEE
Confidence 46899999999999999999999999999999999743 234567889999999999999999999976655 899
Q ss_pred EEEEecCCCChhhhhccCCCccccccCCHHHHHHHHHHHHHHHHHHhhcCCCCceeeCCCCCCeeecC--CCcEEEcccc
Q 040925 610 FVFEYMENGSLKDWLHQSDDQVEVCKLSLIQRVNIAIDVASAMEYLHHHCQPPMVHGDLKPSNVLLDH--DMVAHVCDFG 687 (833)
Q Consensus 610 lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~gL~~LH~~~~~~ivH~Dlkp~NIll~~--~~~~kL~DfG 687 (833)
+||||+++|+|.+++..... .+++.+++.++.|++.||+|||+. ||+||||||+||+++. ++.+||+|||
T Consensus 78 lv~e~~~g~~L~~~l~~~~~-----~~~~~~~~~i~~qi~~al~~lH~~---givH~Dlkp~NIl~~~~~~~~~kl~Dfg 149 (321)
T 1tki_A 78 MIFEFISGLDIFERINTSAF-----ELNEREIVSYVHQVCEALQFLHSH---NIGHFDIRPENIIYQTRRSSTIKIIEFG 149 (321)
T ss_dssp EEECCCCCCBHHHHHTSSSC-----CCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEESSSSCCCEEECCCT
T ss_pred EEEEeCCCCCHHHHHHhcCC-----CCCHHHHHHHHHHHHHHHHHHHHC---CCCcCCCCHHHEEEccCCCCCEEEEECC
Confidence 99999999999999976532 589999999999999999999999 9999999999999987 7899999999
Q ss_pred cccccCcccccccccCCCccccccccccccCccccCCCCCCcccccccCCcCCCccccCCccHHHHHHHhCCCccccccc
Q 040925 688 LAKFLSDHQLDTAVKTPSSSIGLKGTVGYVAPEYGMGSEASMTGDIFTGRRPIDAVFNEGHSLHEFAKTALPEKVMEIVD 767 (833)
Q Consensus 688 ~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~s~~~~~~~~~~~g~~l~~~~~~~~p~~~~~~~~ 767 (833)
+++....... .....||+.|+|||++.+..++.++|||| .|+++++++++..|+.... +
T Consensus 150 ~a~~~~~~~~---------~~~~~gt~~y~aPE~~~~~~~~~~~Diws----------lG~il~~ll~g~~pf~~~~--~ 208 (321)
T 1tki_A 150 QARQLKPGDN---------FRLLFTAPEYYAPEVHQHDVVSTATDMWS----------LGTLVYVLLSGINPFLAET--N 208 (321)
T ss_dssp TCEECCTTCE---------EEEEESCGGGSCHHHHTTCEECHHHHHHH----------HHHHHHHHHHSSCTTCCSS--H
T ss_pred CCeECCCCCc---------cccccCChhhcCcHHhcCCCCCchhhHHH----------HHHHHHHHHhCCCCCcCCC--H
Confidence 9987644221 12346999999999999988999999999 8889999999998875322 1
Q ss_pred ccchhhhccccchhhhhhhhchHHHHHHHHHHhhccCCCCCCCCCCHHHHHHH
Q 040925 768 PSLLMEVMTNNSMIQEDKRVKTEECLNAIIRTGVLCSMESPFERMDMRDVVAK 820 (833)
Q Consensus 768 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~ 820 (833)
............... .....+++..+.+++.+||..||++|||+.|+++.
T Consensus 209 ~~~~~~i~~~~~~~~---~~~~~~~s~~~~~li~~~L~~dp~~Rpt~~e~l~h 258 (321)
T 1tki_A 209 QQIIENIMNAEYTFD---EEAFKEISIEAMDFVDRLLVKERKSRMTASEALQH 258 (321)
T ss_dssp HHHHHHHHHTCCCCC---HHHHTTSCHHHHHHHHTTSCSSGGGSCCHHHHHHS
T ss_pred HHHHHHHHcCCCCCC---hhhhccCCHHHHHHHHHHcCCChhHCcCHHHHhcC
Confidence 111111111111110 11122346678999999999999999999999885
No 75
>2y0a_A Death-associated protein kinase 1; transferase, calmodulin, esprit; HET: MES; 2.60A {Homo sapiens}
Probab=100.00 E-value=3.6e-39 Score=344.87 Aligned_cols=253 Identities=21% Similarity=0.247 Sum_probs=204.3
Q ss_pred hcCCccCceeccCcceEEEEEEECCCceEEEEEEeeccCCc------chhHHHHHHHHHhhcCCCccceEeeEeecCCCC
Q 040925 530 TGEFSSSNMIGQGSFGYVYKGTLGEDEMIVAVKVINLKYKG------ASRSFVAECEALRNIRHRNLIKIITICSSTDFK 603 (833)
Q Consensus 530 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~------~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~ 603 (833)
.++|++.+.||+|+||.||+|++..+++.||+|+++..... ..+.+.+|+.++++++||||+++++++....
T Consensus 10 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~-- 87 (326)
T 2y0a_A 10 DDYYDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQHPNVITLHEVYENKT-- 87 (326)
T ss_dssp HHHEEEEEEEECCSSEEEEEEEETTTCCEEEEEEEEBCCSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSS--
T ss_pred ccceEeceEEeeCCCeEEEEEEECCCCcEEEEEEEEccccccccchhhHHHHHHHHHHHHhCCCCCCCcEEEEEEeCC--
Confidence 35699999999999999999999999999999999754321 3467899999999999999999999976554
Q ss_pred CCceEeEEEEecCCCChhhhhccCCCccccccCCHHHHHHHHHHHHHHHHHHhhcCCCCceeeCCCCCCeeecCCC----
Q 040925 604 GTDFKAFVFEYMENGSLKDWLHQSDDQVEVCKLSLIQRVNIAIDVASAMEYLHHHCQPPMVHGDLKPSNVLLDHDM---- 679 (833)
Q Consensus 604 ~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~gL~~LH~~~~~~ivH~Dlkp~NIll~~~~---- 679 (833)
..++||||+++|+|.+++.... .+++.+++.++.|++.||.|||+. +|+||||||+||+++.++
T Consensus 88 ---~~~lv~e~~~~~~L~~~l~~~~------~~~~~~~~~i~~qi~~al~~lH~~---~ivH~Dlkp~NIll~~~~~~~~ 155 (326)
T 2y0a_A 88 ---DVILILELVAGGELFDFLAEKE------SLTEEEATEFLKQILNGVYYLHSL---QIAHFDLKPENIMLLDRNVPKP 155 (326)
T ss_dssp ---EEEEEEECCCSCBHHHHHTTSS------CCBHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEESCSSSSSC
T ss_pred ---EEEEEEEcCCCCCHHHHHHhcC------CcCHHHHHHHHHHHHHHHHHHHHC---CeEcCCCCHHHEEEecCCCCCC
Confidence 8999999999999999997654 689999999999999999999999 999999999999999887
Q ss_pred cEEEcccccccccCcccccccccCCCccccccccccccCccccCCCCCCcccccccCCcCCCccccCCccHHHHHHHhCC
Q 040925 680 VAHVCDFGLAKFLSDHQLDTAVKTPSSSIGLKGTVGYVAPEYGMGSEASMTGDIFTGRRPIDAVFNEGHSLHEFAKTALP 759 (833)
Q Consensus 680 ~~kL~DfG~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~s~~~~~~~~~~~g~~l~~~~~~~~p 759 (833)
.+||+|||+++...... ......||+.|+|||++.+..++.++|||| .|+++++++++..|
T Consensus 156 ~~kl~Dfg~a~~~~~~~---------~~~~~~gt~~y~aPE~~~~~~~~~~~Diws----------lG~il~~ll~g~~p 216 (326)
T 2y0a_A 156 RIKIIDFGLAHKIDFGN---------EFKNIFGTPEFVAPEIVNYEPLGLEADMWS----------IGVITYILLSGASP 216 (326)
T ss_dssp CEEECCCTTCEECCTTS---------CCCCCCSCTTTCCHHHHTTCCCCTHHHHHH----------HHHHHHHHHHSCCS
T ss_pred CEEEEECCCCeECCCCC---------ccccccCCcCcCCceeecCCCCCcHHHHHH----------HHHHHHHHHHCcCC
Confidence 89999999998764321 112346999999999999999999999999 88899999999988
Q ss_pred CcccccccccchhhhccccchhhhhhhhchHHHHHHHHHHhhccCCCCCCCCCCHHHHHHH
Q 040925 760 EKVMEIVDPSLLMEVMTNNSMIQEDKRVKTEECLNAIIRTGVLCSMESPFERMDMRDVVAK 820 (833)
Q Consensus 760 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~ 820 (833)
+...... ............. .......++..+.+++.+||..||++|||++|+++.
T Consensus 217 f~~~~~~--~~~~~~~~~~~~~---~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~h 272 (326)
T 2y0a_A 217 FLGDTKQ--ETLANVSAVNYEF---EDEYFSNTSALAKDFIRRLLVKDPKKRMTIQDSLQH 272 (326)
T ss_dssp SCCSSHH--HHHHHHHHTCCCC---CHHHHTTSCHHHHHHHHHHSCSSGGGSCCHHHHHHS
T ss_pred CCCCCHH--HHHHHHHhcCCCc---CccccccCCHHHHHHHHHHccCChhhCCCHHHHhcC
Confidence 7522111 1111111110000 011112345678899999999999999999999874
No 76
>3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase inhibitor complex; HET: PP2; 1.89A {Homo sapiens} SCOP: d.144.1.7 PDB: 3sxr_A*
Probab=100.00 E-value=1.5e-39 Score=338.40 Aligned_cols=258 Identities=26% Similarity=0.393 Sum_probs=206.6
Q ss_pred hcCCccCceeccCcceEEEEEEECCCceEEEEEEeeccCCcchhHHHHHHHHHhhcCCCccceEeeEeecCCCCCCceEe
Q 040925 530 TGEFSSSNMIGQGSFGYVYKGTLGEDEMIVAVKVINLKYKGASRSFVAECEALRNIRHRNLIKIITICSSTDFKGTDFKA 609 (833)
Q Consensus 530 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~~ 609 (833)
.++|++.+.||+|+||.||+|++. ++..||+|+++... ...+.+.+|++++++++||||+++++++.... ..+
T Consensus 7 ~~~y~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~-----~~~ 79 (268)
T 3sxs_A 7 REEITLLKELGSGQFGVVKLGKWK-GQYDVAVKMIKEGS-MSEDEFFQEAQTMMKLSHPKLVKFYGVCSKEY-----PIY 79 (268)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEET-TTEEEEEEEECBTT-BCHHHHHHHHHHHHHCCCTTBCCEEEEECSSS-----SEE
T ss_pred hhheeeeeeeccCCCceEEEEEec-CceeEEEEEeccCC-CcHHHHHHHHHHHHhCCCCCEeeEEEEEccCC-----ceE
Confidence 468999999999999999999887 67789999997543 34567899999999999999999999975544 789
Q ss_pred EEEEecCCCChhhhhccCCCccccccCCHHHHHHHHHHHHHHHHHHhhcCCCCceeeCCCCCCeeecCCCcEEEcccccc
Q 040925 610 FVFEYMENGSLKDWLHQSDDQVEVCKLSLIQRVNIAIDVASAMEYLHHHCQPPMVHGDLKPSNVLLDHDMVAHVCDFGLA 689 (833)
Q Consensus 610 lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~gL~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kL~DfG~a 689 (833)
+||||+++|+|.+++..... .+++.+++.++.|++.||+|||+. +|+||||||+||+++.++.+||+|||++
T Consensus 80 lv~e~~~~~~L~~~l~~~~~-----~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~dikp~Nil~~~~~~~~l~Dfg~~ 151 (268)
T 3sxs_A 80 IVTEYISNGCLLNYLRSHGK-----GLEPSQLLEMCYDVCEGMAFLESH---QFIHRDLAARNCLVDRDLCVKVSDFGMT 151 (268)
T ss_dssp EEEECCTTCBHHHHHHHHGG-----GCCHHHHHHHHHHHHHHHHHHHHT---TEEESSCSGGGEEECTTCCEEECCTTCE
T ss_pred EEEEccCCCcHHHHHHHcCC-----CCCHHHHHHHHHHHHHHHHHHHHC---CeecCCcCcceEEECCCCCEEEccCccc
Confidence 99999999999999976432 589999999999999999999999 9999999999999999999999999999
Q ss_pred cccCcccccccccCCCccccccccccccCccccCCCCCCcccccccCCcCCCccccCCccHHHHHH-HhCCCcccccccc
Q 040925 690 KFLSDHQLDTAVKTPSSSIGLKGTVGYVAPEYGMGSEASMTGDIFTGRRPIDAVFNEGHSLHEFAK-TALPEKVMEIVDP 768 (833)
Q Consensus 690 ~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~s~~~~~~~~~~~g~~l~~~~~-~~~p~~~~~~~~~ 768 (833)
.......... .....||+.|+|||++.+..++.++|||| .|++++++++ +..|+......
T Consensus 152 ~~~~~~~~~~-------~~~~~~~~~y~aPE~~~~~~~~~~~Di~s----------lG~il~~l~~~g~~p~~~~~~~-- 212 (268)
T 3sxs_A 152 RYVLDDQYVS-------SVGTKFPVKWSAPEVFHYFKYSSKSDVWA----------FGILMWEVFSLGKMPYDLYTNS-- 212 (268)
T ss_dssp EECCTTCEEE-------CCSCCCCGGGCCHHHHHHSEEETTHHHHH----------HHHHHHHHHTTTCCTTTTSCHH--
T ss_pred eecchhhhhc-------ccCCCcCcccCCHHHHhccCCchhhhhHH----------HHHHHHHHHcCCCCCccccChH--
Confidence 8765433211 12234788999999999888999999999 7788888887 77776522211
Q ss_pred cchhhhccccchhhhhhhhchHHHHHHHHHHhhccCCCCCCCCCCHHHHHHHHHHhhhh
Q 040925 769 SLLMEVMTNNSMIQEDKRVKTEECLNAIIRTGVLCSMESPFERMDMRDVVAKLCHTRET 827 (833)
Q Consensus 769 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~i~~~ 827 (833)
........... ...+..+++.+.+++.+||+.||++|||++|+++.|+.+.+.
T Consensus 213 ~~~~~~~~~~~------~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~ll~~L~~l~~~ 265 (268)
T 3sxs_A 213 EVVLKVSQGHR------LYRPHLASDTIYQIMYSCWHELPEKRPTFQQLLSSIEPLREK 265 (268)
T ss_dssp HHHHHHHTTCC------CCCCTTSCHHHHHHHHHTTCSSGGGSCCHHHHHHHHGGGCC-
T ss_pred HHHHHHHcCCC------CCCCCcChHHHHHHHHHHcCCChhhCcCHHHHHHHHHHhhhc
Confidence 11111111100 011122355788999999999999999999999999998764
No 77
>2izr_A Casein kinase I isoform gamma-3; serine/threonine-protein kinase, transferase, ATP- binding, phosphorylation, nucleotide-binding; HET: BRK; 1.3A {Homo sapiens} PDB: 2izs_A* 2izt_A* 2izu_A* 2chl_A* 2c47_A* 2cmw_A*
Probab=100.00 E-value=3.3e-39 Score=346.45 Aligned_cols=268 Identities=22% Similarity=0.272 Sum_probs=210.3
Q ss_pred cCCccCceeccCcceEEEEEEECCCceEEEEEEeeccCCcchhHHHHHHHHHhhc-CCCccceEeeEeecCCCCCCceEe
Q 040925 531 GEFSSSNMIGQGSFGYVYKGTLGEDEMIVAVKVINLKYKGASRSFVAECEALRNI-RHRNLIKIITICSSTDFKGTDFKA 609 (833)
Q Consensus 531 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~~~~~~~~~~~~~~~~~~ 609 (833)
++|++.+.||+|+||.||+|++..+++.||||++.... ..+.+.+|+++++++ +||||+++++++.... ..+
T Consensus 9 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~--~~~~~~~E~~~l~~l~~h~~i~~~~~~~~~~~-----~~~ 81 (330)
T 2izr_A 9 PNFRVGKKIGCGNFGELRLGKNLYTNEYVAIKLEPMKS--RAPQLHLEYRFYKQLGSGDGIPQVYYFGPCGK-----YNA 81 (330)
T ss_dssp TTEEEEEECCC-CTTSEEEEEETTTTEEEEEEEEETTC--SSCCHHHHHHHHHHHCSCTTSCCEEEEEEETT-----EEE
T ss_pred CCeEEEEEeeccCCceEEEEEECCCCcEEEEEEecccc--chHHHHHHHHHHHHhhCCCCCCEEEEEEecCC-----ccE
Confidence 57999999999999999999998899999999986442 345689999999999 8999999999976654 889
Q ss_pred EEEEecCCCChhhhhccCCCccccccCCHHHHHHHHHHHHHHHHHHhhcCCCCceeeCCCCCCeeecCCCc-----EEEc
Q 040925 610 FVFEYMENGSLKDWLHQSDDQVEVCKLSLIQRVNIAIDVASAMEYLHHHCQPPMVHGDLKPSNVLLDHDMV-----AHVC 684 (833)
Q Consensus 610 lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~gL~~LH~~~~~~ivH~Dlkp~NIll~~~~~-----~kL~ 684 (833)
+||||+ +|+|.+++..... .+++..++.++.|++.||+|||+. +|+||||||+||+++.++. +||+
T Consensus 82 lv~e~~-~~~L~~~~~~~~~-----~~~~~~~~~i~~qi~~~l~~LH~~---~iiHrDlkp~Nill~~~~~~~~~~~kl~ 152 (330)
T 2izr_A 82 MVLELL-GPSLEDLFDLCDR-----TFSLKTVLMIAIQLISRMEYVHSK---NLIYRDVKPENFLIGRPGNKTQQVIHII 152 (330)
T ss_dssp EEEECC-CCBHHHHHHHTTT-----CCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECCGGGTCTTSEEEC
T ss_pred EEEEeC-CCCHHHHHHHcCC-----CCCHHHHHHHHHHHHHHHHHHHhC---CeeccCCCHHHeeeccCCCCCCceEEEE
Confidence 999999 8999999986532 689999999999999999999999 9999999999999998887 9999
Q ss_pred ccccccccCcccccccccCCCccccccccccccCccccCCCCCCcccccccCCcCCCccccCCccHHHHHHHhCCCcccc
Q 040925 685 DFGLAKFLSDHQLDTAVKTPSSSIGLKGTVGYVAPEYGMGSEASMTGDIFTGRRPIDAVFNEGHSLHEFAKTALPEKVME 764 (833)
Q Consensus 685 DfG~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~s~~~~~~~~~~~g~~l~~~~~~~~p~~~~~ 764 (833)
|||+|+........... .........||+.|+|||++.+..++.++|||| +|+++++++++..|+....
T Consensus 153 DFg~a~~~~~~~~~~~~-~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~s----------lG~il~ell~g~~Pf~~~~ 221 (330)
T 2izr_A 153 DFALAKEYIDPETKKHI-PYREHKSLTGTARYMSINTHLGKEQSRRDDLEA----------LGHMFMYFLRGSLPWQGLK 221 (330)
T ss_dssp CCTTCEESBCTTTCCBC-CCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHH----------HHHHHHHHHHSSCTTTTCC
T ss_pred EcccceeeecCCCCccc-cccccCCcCCCccccChHHHcCCCCCchhHHHH----------HHHHHHHHhcCCCCccccc
Confidence 99999876543221110 111223467999999999999999999999999 8899999999999986432
Q ss_pred cccccchhhhccccchhhhhhhhchHHHHHHHHHHhhccCCCCCCCCCCHHHHHHHHHHhhhh
Q 040925 765 IVDPSLLMEVMTNNSMIQEDKRVKTEECLNAIIRTGVLCSMESPFERMDMRDVVAKLCHTRET 827 (833)
Q Consensus 765 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~i~~~ 827 (833)
..+.......+....... ........++ .+.+++..||..||.+||++++|.+.|+.+.+.
T Consensus 222 ~~~~~~~~~~i~~~~~~~-~~~~~~~~~p-~~~~li~~~l~~~p~~RP~~~~l~~~l~~~~~~ 282 (330)
T 2izr_A 222 ADTLKERYQKIGDTKRAT-PIEVLCENFP-EMATYLRYVRRLDFFEKPDYDYLRKLFTDLFDR 282 (330)
T ss_dssp CSSHHHHHHHHHHHHHHS-CHHHHTTTCH-HHHHHHHHHHHCCTTCCCCHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHhhhccC-CHHHHhccCh-HHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHH
Confidence 111111111110000000 0000111134 889999999999999999999999999988764
No 78
>1csn_A Casein kinase-1; phosphotransferase; HET: ATP; 2.00A {Schizosaccharomyces pombe} SCOP: d.144.1.7 PDB: 1eh4_A* 2csn_A*
Probab=100.00 E-value=6.2e-39 Score=339.36 Aligned_cols=272 Identities=19% Similarity=0.233 Sum_probs=214.2
Q ss_pred hcCCccCceeccCcceEEEEEEECCCceEEEEEEeeccCCcchhHHHHHHHHHhhc-CCCccceEeeEeecCCCCCCceE
Q 040925 530 TGEFSSSNMIGQGSFGYVYKGTLGEDEMIVAVKVINLKYKGASRSFVAECEALRNI-RHRNLIKIITICSSTDFKGTDFK 608 (833)
Q Consensus 530 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~~~~~~~~~~~~~~~~~ 608 (833)
.++|++.+.||+|+||.||+|++..+++.||||++... ...+.+.+|+++++++ +|++++++++++.... ..
T Consensus 9 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~--~~~~~~~~e~~~~~~l~~~~~i~~~~~~~~~~~-----~~ 81 (298)
T 1csn_A 9 GVHYKVGRRIGEGSFGVIFEGTNLLNNQQVAIKFEPRR--SDAPQLRDEYRTYKLLAGCTGIPNVYYFGQEGL-----HN 81 (298)
T ss_dssp TTTEEEEEEEEECSSCEEEEEEETTTTEEEEEEEEECC--TTSCCHHHHHHHHHHTTTCTTCCCEEEEEEETT-----EE
T ss_pred ccceEEEEEEeecCCEEEEEEEECCCCcEEEEEEeccC--CccHHHHHHHHHHHHHhcCCCCCeEEeecCCCc-----ee
Confidence 35799999999999999999999889999999998643 2345688999999999 7999999999976554 88
Q ss_pred eEEEEecCCCChhhhhccCCCccccccCCHHHHHHHHHHHHHHHHHHhhcCCCCceeeCCCCCCeeecCCCc-----EEE
Q 040925 609 AFVFEYMENGSLKDWLHQSDDQVEVCKLSLIQRVNIAIDVASAMEYLHHHCQPPMVHGDLKPSNVLLDHDMV-----AHV 683 (833)
Q Consensus 609 ~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~gL~~LH~~~~~~ivH~Dlkp~NIll~~~~~-----~kL 683 (833)
++||||+ +++|.+++..... .+++.+++.++.|++.||+|||+. +|+||||||+||+++.++. +||
T Consensus 82 ~lv~e~~-~~~L~~~l~~~~~-----~~~~~~~~~i~~qi~~~l~~lH~~---~ivH~Dlkp~NIl~~~~~~~~~~~~kl 152 (298)
T 1csn_A 82 VLVIDLL-GPSLEDLLDLCGR-----KFSVKTVAMAAKQMLARVQSIHEK---SLVYRDIKPDNFLIGRPNSKNANMIYV 152 (298)
T ss_dssp EEEEECC-CCBHHHHHHHTTT-----CCCHHHHHHHHHHHHHHHHHHHTT---TEECCCCCGGGEEECCSSSTTTTCEEE
T ss_pred EEEEEec-CCCHHHHHHHhcc-----CCCHHHHHHHHHHHHHHHHHHHhC---CEecCCCCHHHEEeccCCCCCCCeEEE
Confidence 9999999 8999999986542 589999999999999999999999 9999999999999987775 999
Q ss_pred cccccccccCcccccccccCCCccccccccccccCccccCCCCCCcccccccCCcCCCccccCCccHHHHHHHhCCCccc
Q 040925 684 CDFGLAKFLSDHQLDTAVKTPSSSIGLKGTVGYVAPEYGMGSEASMTGDIFTGRRPIDAVFNEGHSLHEFAKTALPEKVM 763 (833)
Q Consensus 684 ~DfG~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~s~~~~~~~~~~~g~~l~~~~~~~~p~~~~ 763 (833)
+|||+++........... .........||+.|+|||++.+..++.++|||| +|+++++++++..|+...
T Consensus 153 ~Dfg~~~~~~~~~~~~~~-~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~s----------lG~il~el~~g~~pf~~~ 221 (298)
T 1csn_A 153 VDFGMVKFYRDPVTKQHI-PYREKKNLSGTARYMSINTHLGREQSRRDDLEA----------LGHVFMYFLRGSLPWQGL 221 (298)
T ss_dssp CCCTTCEESBCTTTCCBC-CCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHH----------HHHHHHHHHHSSCTTSSC
T ss_pred EECccccccccccccccc-cccCccCCCCCcccCCchhhcCCCCChHHHHHH----------HHHHHHHHHcCCCCcchh
Confidence 999999876553321111 111233467999999999999999999999999 888999999999998643
Q ss_pred ccccccchhhhccccchhhhhhhhchHHHHHHHHHHhhccCCCCCCCCCCHHHHHHHHHHhhhhhh
Q 040925 764 EIVDPSLLMEVMTNNSMIQEDKRVKTEECLNAIIRTGVLCSMESPFERMDMRDVVAKLCHTRETFL 829 (833)
Q Consensus 764 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~i~~~~~ 829 (833)
...+.......+..... ..........+++.+.+++.+||+.||++|||+++|++.|+++.+...
T Consensus 222 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~li~~~l~~dp~~RP~~~~l~~~l~~~~~~~~ 286 (298)
T 1csn_A 222 KAATNKQKYERIGEKKQ-STPLRELCAGFPEEFYKYMHYARNLAFDATPDYDYLQGLFSKVLERLN 286 (298)
T ss_dssp CSCCHHHHHHHHHHHHH-HSCHHHHTTTSCHHHHHHHHHHHHCCTTCCCCHHHHHHHHHHHHHHTT
T ss_pred hccccHHHHHHHHhhcc-CccHHHHHhhCcHHHHHHHHHHhcCCcccCCCHHHHHHHHHHHHHhcC
Confidence 22211111111110000 000111112456789999999999999999999999999999987643
No 79
>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta 7 linker; phosphorylation, cytosolic, transferase-transferase inhibitor complex; HET: DB8; 3.55A {Homo sapiens}
Probab=100.00 E-value=4.7e-39 Score=356.45 Aligned_cols=255 Identities=19% Similarity=0.214 Sum_probs=204.3
Q ss_pred HhcCCccCceeccCcceEEEEEEECCCceEEEEEEeeccCC--cchhHHHHHHHHHhhcCCCccceEeeEeecCCCCCCc
Q 040925 529 ATGEFSSSNMIGQGSFGYVYKGTLGEDEMIVAVKVINLKYK--GASRSFVAECEALRNIRHRNLIKIITICSSTDFKGTD 606 (833)
Q Consensus 529 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~--~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~ 606 (833)
..++|++.+.||+|+||.||+|.+..+++.||+|++..... ...+.+.+|++++++++||||+++++++.+.+
T Consensus 9 ~~~~Y~i~~~LG~G~fg~V~~~~~~~~~~~~a~K~i~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~~~----- 83 (444)
T 3soa_A 9 FTEEYQLFEELGKGAFSVVRRCVKVLAGQEYAAMIINTKKLSARDHQKLEREARICRLLKHPNIVRLHDSISEEG----- 83 (444)
T ss_dssp HHHHEEEEEEEEEC--CEEEEEEETTTTEEEEEEEEESCSCHHHHHHHHHHHHHHHHHCCBTTBCCEEEEEECSS-----
T ss_pred ccCCeEEEEEeccCCCeEEEEEEECCCCcEEEEEEEEcccCCHHHHHHHHHHHHHHHhCCCcCCCeEEEEEEECC-----
Confidence 45689999999999999999999999999999999975432 23457899999999999999999999976554
Q ss_pred eEeEEEEecCCCChhhhhccCCCccccccCCHHHHHHHHHHHHHHHHHHhhcCCCCceeeCCCCCCeeec---CCCcEEE
Q 040925 607 FKAFVFEYMENGSLKDWLHQSDDQVEVCKLSLIQRVNIAIDVASAMEYLHHHCQPPMVHGDLKPSNVLLD---HDMVAHV 683 (833)
Q Consensus 607 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~gL~~LH~~~~~~ivH~Dlkp~NIll~---~~~~~kL 683 (833)
..++||||+++|+|.+++.... .+++..+..++.|++.||+|||+. ||+||||||+||+++ .++.+||
T Consensus 84 ~~~lv~E~~~gg~L~~~i~~~~------~~~e~~~~~i~~qil~aL~~lH~~---givHrDlKp~NIll~~~~~~~~vkL 154 (444)
T 3soa_A 84 HHYLIFDLVTGGELFEDIVARE------YYSEADASHCIQQILEAVLHCHQM---GVVHRNLKPENLLLASKLKGAAVKL 154 (444)
T ss_dssp EEEEEECCCBCCBHHHHHHHCS------CCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCSSTTEEESBSSTTCCEEE
T ss_pred EEEEEEEeCCCCCHHHHHHHcC------CCCHHHHHHHHHHHHHHHHHHHHC---CccccCCCHHHEEEeccCCCCcEEE
Confidence 8999999999999999998764 689999999999999999999999 999999999999998 4678999
Q ss_pred cccccccccCcccccccccCCCccccccccccccCccccCCCCCCcccccccCCcCCCccccCCccHHHHHHHhCCCccc
Q 040925 684 CDFGLAKFLSDHQLDTAVKTPSSSIGLKGTVGYVAPEYGMGSEASMTGDIFTGRRPIDAVFNEGHSLHEFAKTALPEKVM 763 (833)
Q Consensus 684 ~DfG~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~s~~~~~~~~~~~g~~l~~~~~~~~p~~~~ 763 (833)
+|||+|+....... ......||+.|+|||++.+..++.++|||| .|+++|+++++..|+...
T Consensus 155 ~DFG~a~~~~~~~~--------~~~~~~gt~~Y~APE~l~~~~~~~~~DIwS----------lGvilyell~G~~Pf~~~ 216 (444)
T 3soa_A 155 ADFGLAIEVEGEQQ--------AWFGFAGTPGYLSPEVLRKDPYGKPVDLWA----------CGVILYILLVGYPPFWDE 216 (444)
T ss_dssp CCCSSCBCCCTTCC--------BCCCSCSCGGGCCHHHHTTCCBCTHHHHHH----------HHHHHHHHHHSSCSCCCS
T ss_pred ccCceeEEecCCCc--------eeecccCCcccCCHHHhcCCCCCCccccHH----------HHHHHHHHHhCCCCCCCc
Confidence 99999986654321 122357999999999999999999999999 888999999999887522
Q ss_pred ccccccchhhhccccchhhhhhhhchHHHHHHHHHHhhccCCCCCCCCCCHHHHHHH
Q 040925 764 EIVDPSLLMEVMTNNSMIQEDKRVKTEECLNAIIRTGVLCSMESPFERMDMRDVVAK 820 (833)
Q Consensus 764 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~ 820 (833)
.. .............. .......+++.+.+++.+||+.||++|||+.|+++.
T Consensus 217 ~~--~~~~~~i~~~~~~~---~~~~~~~~s~~~~~li~~~L~~dP~~Rpta~e~L~h 268 (444)
T 3soa_A 217 DQ--HRLYQQIKAGAYDF---PSPEWDTVTPEAKDLINKMLTINPSKRITAAEALKH 268 (444)
T ss_dssp SH--HHHHHHHHHTCCCC---CTTTTTTSCHHHHHHHHHHSCSSTTTSCCHHHHHHS
T ss_pred cH--HHHHHHHHhCCCCC---CccccccCCHHHHHHHHHHcCCChhHCCCHHHHhcC
Confidence 11 11111111111100 011112345678899999999999999999999874
No 80
>4fr4_A YANK1, serine/threonine-protein kinase 32A; structural genomics, structural genomics consortium, SGC, TR; HET: STU; 2.29A {Homo sapiens}
Probab=100.00 E-value=3.5e-39 Score=350.05 Aligned_cols=251 Identities=20% Similarity=0.298 Sum_probs=203.6
Q ss_pred hcCCccCceeccCcceEEEEEEECCCceEEEEEEeecc---CCcchhHHHHHHHHHhhcCCCccceEeeEeecCCCCCCc
Q 040925 530 TGEFSSSNMIGQGSFGYVYKGTLGEDEMIVAVKVINLK---YKGASRSFVAECEALRNIRHRNLIKIITICSSTDFKGTD 606 (833)
Q Consensus 530 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~---~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~ 606 (833)
.++|++.+.||+|+||.||+|++..+++.||+|++... .....+.+.+|++++++++||||+++++++....
T Consensus 14 ~~~y~i~~~LG~G~fG~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~E~~il~~l~hp~Iv~l~~~~~~~~----- 88 (384)
T 4fr4_A 14 FDHFEILRAIGKGSFGKVCIVQKNDTKKMYAMKYMNKQKCVERNEVRNVFKELQIMQGLEHPFLVNLWYSFQDEE----- 88 (384)
T ss_dssp GGGEEEEEEEECCTTCCEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSS-----
T ss_pred hHHeEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEehhhcccHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEeCC-----
Confidence 36799999999999999999999999999999999643 2334567889999999999999999999976655
Q ss_pred eEeEEEEecCCCChhhhhccCCCccccccCCHHHHHHHHHHHHHHHHHHhhcCCCCceeeCCCCCCeeecCCCcEEEccc
Q 040925 607 FKAFVFEYMENGSLKDWLHQSDDQVEVCKLSLIQRVNIAIDVASAMEYLHHHCQPPMVHGDLKPSNVLLDHDMVAHVCDF 686 (833)
Q Consensus 607 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~gL~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kL~Df 686 (833)
..|+||||+++|+|.+++.... .+++..++.++.|++.||+|||+. ||+||||||+||+++.++.+||+||
T Consensus 89 ~~~lv~e~~~gg~L~~~l~~~~------~l~~~~~~~~~~qi~~aL~~LH~~---givHrDlkp~NIll~~~g~vkL~DF 159 (384)
T 4fr4_A 89 DMFMVVDLLLGGDLRYHLQQNV------HFKEETVKLFICELVMALDYLQNQ---RIIHRDMKPDNILLDEHGHVHITDF 159 (384)
T ss_dssp EEEEEECCCTTEEHHHHHHTTC------CCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTSCEEECCC
T ss_pred EEEEEEecCCCCcHHHHHHhcC------CCCHHHHHHHHHHHHHHHHHHHHC---CceeccCcHHHeEECCCCCEEEecc
Confidence 8999999999999999998754 689999999999999999999999 9999999999999999999999999
Q ss_pred ccccccCcccccccccCCCccccccccccccCccccCC---CCCCcccccccCCcCCCccccCCccHHHHHHHhCCCccc
Q 040925 687 GLAKFLSDHQLDTAVKTPSSSIGLKGTVGYVAPEYGMG---SEASMTGDIFTGRRPIDAVFNEGHSLHEFAKTALPEKVM 763 (833)
Q Consensus 687 G~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~---~~~~~~~Di~s~~~~~~~~~~~g~~l~~~~~~~~p~~~~ 763 (833)
|+|+...... .....+||+.|+|||++.+ ..++.++|||| .|+++|+++++..|+...
T Consensus 160 G~a~~~~~~~---------~~~~~~gt~~Y~aPE~~~~~~~~~~~~~~DiwS----------lG~il~elltG~~Pf~~~ 220 (384)
T 4fr4_A 160 NIAAMLPRET---------QITTMAGTKPYMAPEMFSSRKGAGYSFAVDWWS----------LGVTAYELLRGRRPYHIR 220 (384)
T ss_dssp TTCEECCTTC---------CBCCCCSCGGGCCGGGTCCCSSCCBCTTHHHHH----------HHHHHHHHHHSSCSSCCC
T ss_pred ceeeeccCCC---------ceeccCCCccccCCeeeccCCCCCCCccceeec----------hHHHHHHHHhCCCCCCCC
Confidence 9998664321 1234579999999999864 45899999999 888999999999998633
Q ss_pred ccccccchhhhccccchhhhhhhhchHHHHHHHHHHhhccCCCCCCCCCC-HHHHHH
Q 040925 764 EIVDPSLLMEVMTNNSMIQEDKRVKTEECLNAIIRTGVLCSMESPFERMD-MRDVVA 819 (833)
Q Consensus 764 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt-~~eil~ 819 (833)
...+.......... .....+..++..+.+++.+||..||++||+ ++++.+
T Consensus 221 ~~~~~~~~~~~~~~------~~~~~p~~~s~~~~~li~~lL~~dP~~R~s~~~~l~~ 271 (384)
T 4fr4_A 221 SSTSSKEIVHTFET------TVVTYPSAWSQEMVSLLKKLLEPNPDQRFSQLSDVQN 271 (384)
T ss_dssp TTSCHHHHHHHHHH------CCCCCCTTSCHHHHHHHHHHSCSSGGGSCCSHHHHHT
T ss_pred CCccHHHHHHHHhh------cccCCCCcCCHHHHHHHHHHhcCCHhHhcccHHHHHc
Confidence 22211111111100 011112334667899999999999999998 666654
No 81
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=6.9e-38 Score=349.42 Aligned_cols=346 Identities=18% Similarity=0.217 Sum_probs=290.3
Q ss_pred CcEEEcCCCcCcccCCccccCCCCCCEEEccCCcccccCCccCCCCCCCCEEEcCCCcccccCCccccCCCCCcEEECCC
Q 040925 1 LQTLAVNDNYLTGQLPDFVGNLSDLEVIRIMGNSLGGKIPTTLGLLRNLVSLNVAENKFSGMFPRSICNISSLELIQLAL 80 (833)
Q Consensus 1 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~ 80 (833)
|++|++++|.+++. | .++.+++|++|++++|++++. | ++.+++|++|+|++|+++++ + |+++++|++|+|++
T Consensus 44 L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~L~~ 115 (457)
T 3bz5_A 44 LTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLNCDT 115 (457)
T ss_dssp CCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEECCS
T ss_pred CCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCCcCCEEECCC
Confidence 68999999999964 5 799999999999999999764 4 99999999999999999965 3 99999999999999
Q ss_pred cccccccCchhhcCCCCccEEEccCCcceeeCCccccCCCCCcEEEcccCccccccCcCccCCCcCceEecccccCCCCC
Q 040925 81 NRFSGNLPFDIVVNLPNLKALAIGGNNFFGSIPYSLSNASNLELLDLSVNQFKGNVSIDFSSLKNLLWLNLEQNNLGTGT 160 (833)
Q Consensus 81 N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 160 (833)
|+++ .+| +..+++|++|+|++|++++. + ++.+++|++|++++|+..+.. .+..+++|++|++++|+++.++
T Consensus 116 N~l~-~l~---~~~l~~L~~L~l~~N~l~~l-~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~l~ 186 (457)
T 3bz5_A 116 NKLT-KLD---VSQNPLLTYLNCARNTLTEI-D--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITELD 186 (457)
T ss_dssp SCCS-CCC---CTTCTTCCEEECTTSCCSCC-C--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCCCC
T ss_pred CcCC-eec---CCCCCcCCEEECCCCcccee-c--cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccceec
Confidence 9998 565 78999999999999999864 3 889999999999999543222 5889999999999999998753
Q ss_pred CCCcccccccCCCCCCCEEEccCCcCcccCChhHhhhcccccEEEccCccccccCChhhhcCCCCCeEeccCCcccccCC
Q 040925 161 ATDLDFVTFLTNCSSLKALSLADNQFGGELPHSIANLSSTVINFGIGRNQISGTIPPGIRNLVNLIGFGAEENQLHGTIP 240 (833)
Q Consensus 161 ~~~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 240 (833)
+..+++|+.|++++|++++. + +..+ ..++.|++++|++++ +| +..+++|+.|++++|++++..+
T Consensus 187 ---------l~~l~~L~~L~l~~N~l~~~-~--l~~l-~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~~ 250 (457)
T 3bz5_A 187 ---------VSQNKLLNRLNCDTNNITKL-D--LNQN-IQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELDV 250 (457)
T ss_dssp ---------CTTCTTCCEEECCSSCCSCC-C--CTTC-TTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCCC
T ss_pred ---------cccCCCCCEEECcCCcCCee-c--cccC-CCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcCH
Confidence 56889999999999999964 3 5555 458899999999998 45 8899999999999999998776
Q ss_pred ccccCCC-------CCCEEEcccccCcccCCccccCCCCCCeEEeecccccCCCCCCCCCCCccceeecCCceecccCCc
Q 040925 241 DAIGELK-------NLQKLCLFRNFLQGRIPSGLGNLTKLANLELSSNSLQGNIPSSLGNCQNLMSFTASQNKLTGALPH 313 (833)
Q Consensus 241 ~~~~~l~-------~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~ 313 (833)
..+..+. +|+.|++++|.+.+.+| +..+++|+.|+|++|...+.+|. ..++|+.|++++|.
T Consensus 251 ~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~---~~~~L~~L~l~~~~------- 318 (457)
T 3bz5_A 251 STLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDC---QAAGITELDLSQNP------- 318 (457)
T ss_dssp TTCTTCCEEECTTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEEC---TTCCCSCCCCTTCT-------
T ss_pred HHCCCCCEEeccCCCCCEEECCCCccCCccc--ccccccCCEEECCCCcccceecc---CCCcceEechhhcc-------
Confidence 6655554 55666666666655554 56789999999999998877774 45678888888772
Q ss_pred ccccccccceeeecCCCccCCCCCcccccCCCcCEEeccCCcCCCCCCccccCCCCCcEEeecCCccccccCccccCCCC
Q 040925 314 QLLSITTLSLYLDLSNNLLNGSLPLQVGHLKNLVILDISSNQFSGVIPGTLSTCVCLEYLDISSNSFHGVIPLSLSFLKS 393 (833)
Q Consensus 314 ~~~~~~~ll~~L~ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 393 (833)
.+ ++|++++|++++. .++++++|+.|++++|++++ ++.|..|++++|++.+. ..+..
T Consensus 319 ------~L-~~L~L~~N~l~~l---~l~~l~~L~~L~l~~N~l~~--------l~~L~~L~l~~n~l~g~-----~~~~~ 375 (457)
T 3bz5_A 319 ------KL-VYLYLNNTELTEL---DVSHNTKLKSLSCVNAHIQD--------FSSVGKIPALNNNFEAE-----GQTIT 375 (457)
T ss_dssp ------TC-CEEECTTCCCSCC---CCTTCTTCSEEECCSSCCCB--------CTTGGGSSGGGTSEEEE-----EEEEE
T ss_pred ------cC-CEEECCCCccccc---ccccCCcCcEEECCCCCCCC--------ccccccccccCCcEEec-----ceeee
Confidence 33 7899999999974 38999999999999999985 35677788999999975 35667
Q ss_pred CCeEEccCcccCCCchhhhcC
Q 040925 394 IKELNVSSNNLSGQIPEFLKN 414 (833)
Q Consensus 394 L~~L~l~~N~l~~~~p~~l~~ 414 (833)
|..+++++|+++|.+|..+..
T Consensus 376 l~~l~l~~N~l~g~ip~~~~~ 396 (457)
T 3bz5_A 376 MPKETLTNNSLTIAVSPDLLD 396 (457)
T ss_dssp CCCBCCBTTBEEEECCTTCBC
T ss_pred cCccccccCcEEEEcChhHhc
Confidence 889999999999998876543
No 82
>4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: SEP BX7; 1.80A {Homo sapiens}
Probab=100.00 E-value=1.1e-38 Score=340.77 Aligned_cols=266 Identities=21% Similarity=0.279 Sum_probs=208.8
Q ss_pred cCCccCceeccCcceEEEEEEECCCceEEEEEEeeccC-CcchhHHHHHHHHHhhcCCCccceEeeEeecCCCCCCceEe
Q 040925 531 GEFSSSNMIGQGSFGYVYKGTLGEDEMIVAVKVINLKY-KGASRSFVAECEALRNIRHRNLIKIITICSSTDFKGTDFKA 609 (833)
Q Consensus 531 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~~ 609 (833)
++|++.+.||+|+||.||+|++..+++.||||+++... ....+.+.+|++++++++||||+++++++.... ....+
T Consensus 9 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~---~~~~~ 85 (319)
T 4euu_A 9 HLWLLSDILGQGATANVFRGRHKKTGDLFAIKVFNNISFLRPVDVQMREFEVLKKLNHKNIVKLFAIEEETT---TRHKV 85 (319)
T ss_dssp EEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECGGGGGSCHHHHHHHHHHHHHCCCTTBCCEEEEEECTT---TCCEE
T ss_pred CCEEEEEEecCCCCeEEEEEEECCCCcEEEEEEeccccccchHHHHHHHHHHHHhcCCCCcceEEEEeecCC---CceEE
Confidence 57999999999999999999999999999999997443 234567889999999999999999999976543 34789
Q ss_pred EEEEecCCCChhhhhccCCCccccccCCHHHHHHHHHHHHHHHHHHhhcCCCCceeeCCCCCCeee----cCCCcEEEcc
Q 040925 610 FVFEYMENGSLKDWLHQSDDQVEVCKLSLIQRVNIAIDVASAMEYLHHHCQPPMVHGDLKPSNVLL----DHDMVAHVCD 685 (833)
Q Consensus 610 lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~gL~~LH~~~~~~ivH~Dlkp~NIll----~~~~~~kL~D 685 (833)
+||||+++|+|.+++...... ..+++.+++.++.|++.||+|||+. +|+||||||+||++ +.++.+||+|
T Consensus 86 lv~e~~~~~~L~~~l~~~~~~---~~~~~~~~~~i~~qi~~~L~~LH~~---~ivH~Dlkp~NIll~~~~~~~~~~kL~D 159 (319)
T 4euu_A 86 LIMEFCPCGSLYTVLEEPSNA---YGLPESEFLIVLRDVVGGMNHLREN---GIVHRNIKPGNIMRVIGEDGQSVYKLTD 159 (319)
T ss_dssp EEEECCTTCBHHHHHHSGGGT---TCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEEECTTSCEEEEECC
T ss_pred EEEeCCCCCCHHHHHHHhccc---cCCCHHHHHHHHHHHHHHHHHHHHC---CEecCCCCHHHEEEeccCCCCceEEEcc
Confidence 999999999999999875421 1489999999999999999999999 99999999999999 7788899999
Q ss_pred cccccccCcccccccccCCCccccccccccccCccccC--------CCCCCcccccccCCcCCCccccCCccHHHHHHHh
Q 040925 686 FGLAKFLSDHQLDTAVKTPSSSIGLKGTVGYVAPEYGM--------GSEASMTGDIFTGRRPIDAVFNEGHSLHEFAKTA 757 (833)
Q Consensus 686 fG~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~--------~~~~~~~~Di~s~~~~~~~~~~~g~~l~~~~~~~ 757 (833)
||+++....... .....||+.|+|||++. +..++.++|||| +|+++++++++.
T Consensus 160 fg~a~~~~~~~~---------~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~Diws----------lG~il~el~~g~ 220 (319)
T 4euu_A 160 FGAARELEDDEQ---------FVSLYGTEEYLHPDMYERAVLRKDHQKKYGATVDLWS----------IGVTFYHAATGS 220 (319)
T ss_dssp CTTCEECCTTCC---------BCCCCSCGGGCCHHHHHHHTSCCCCCCCBCTTHHHHH----------HHHHHHHHHHSS
T ss_pred CCCceecCCCCc---------eeecccCCCccCHHHhhhccccccccCCCCcHHHHHH----------HHHHHHHHHhCC
Confidence 999987654321 12346999999999875 577899999999 788888888888
Q ss_pred CCCccccccc--ccchhhhccccc------------------hhhhhhhhchHHHHHHHHHHhhccCCCCCCCCCCHHHH
Q 040925 758 LPEKVMEIVD--PSLLMEVMTNNS------------------MIQEDKRVKTEECLNAIIRTGVLCSMESPFERMDMRDV 817 (833)
Q Consensus 758 ~p~~~~~~~~--~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~ei 817 (833)
.|+......+ ............ ...+..........+.+.+++.+||+.||++|||++|+
T Consensus 221 ~pf~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~~R~s~~el 300 (319)
T 4euu_A 221 LPFRPFEGPRRNKEVMYKIITGKPSGAISGVQKAENGPIDWSGDMPVSCSLSRGLQVLLTPVLANILEADQEKCWGFDQF 300 (319)
T ss_dssp CSEECTTCGGGCHHHHHHHHHHCCTTCCEEEECSTTCCEEEESSCCTTCSSCHHHHHHHHHHHHHHSCCCTTTSCCHHHH
T ss_pred CCCCCCCccchhHHHHHHHhcCCCcccchhhhcccCCccccCccCCcccccchhHHHHhHHHHHHhccCChhhhccHHHh
Confidence 8865211100 111111100000 00011112346678889999999999999999999999
Q ss_pred HHHHHHh
Q 040925 818 VAKLCHT 824 (833)
Q Consensus 818 l~~L~~i 824 (833)
++.....
T Consensus 301 l~h~~d~ 307 (319)
T 4euu_A 301 FAETSDI 307 (319)
T ss_dssp HHHHHHH
T ss_pred hhccHHH
Confidence 9988754
No 83
>3a8x_A Protein kinase C IOTA type; transferase; HET: TPO; 2.00A {Homo sapiens} PDB: 3a8w_A* 1zrz_A*
Probab=100.00 E-value=3.5e-39 Score=346.82 Aligned_cols=247 Identities=22% Similarity=0.279 Sum_probs=198.8
Q ss_pred hcCCccCceeccCcceEEEEEEECCCceEEEEEEeeccCC---cchhHHHHHHHHHhhc-CCCccceEeeEeecCCCCCC
Q 040925 530 TGEFSSSNMIGQGSFGYVYKGTLGEDEMIVAVKVINLKYK---GASRSFVAECEALRNI-RHRNLIKIITICSSTDFKGT 605 (833)
Q Consensus 530 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~---~~~~~~~~E~~~l~~l-~h~niv~~~~~~~~~~~~~~ 605 (833)
.++|++.+.||+|+||.||+|+++.+++.||+|+++.... ...+.+.+|..+++++ +||||+++++++....
T Consensus 8 ~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~iv~l~~~~~~~~---- 83 (345)
T 3a8x_A 8 LQDFDLLRVIGRGSYAKVLLVRLKKTDRIYAMKVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQTES---- 83 (345)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEGGGSCSHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSS----
T ss_pred hhheEEEEEEEecCCeEEEEEEECCCCCEEEEEEEEhHHhcchHHHHHHHHHHHHHHhcCCCCccCeEEEEEEeCC----
Confidence 3579999999999999999999999999999999975422 2345688999999998 8999999999976554
Q ss_pred ceEeEEEEecCCCChhhhhccCCCccccccCCHHHHHHHHHHHHHHHHHHhhcCCCCceeeCCCCCCeeecCCCcEEEcc
Q 040925 606 DFKAFVFEYMENGSLKDWLHQSDDQVEVCKLSLIQRVNIAIDVASAMEYLHHHCQPPMVHGDLKPSNVLLDHDMVAHVCD 685 (833)
Q Consensus 606 ~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~gL~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kL~D 685 (833)
..|+||||+++|+|.+++.... .+++..++.++.|++.||+|||+. +|+||||||+||+++.++.+||+|
T Consensus 84 -~~~lv~e~~~gg~L~~~l~~~~------~l~~~~~~~~~~qi~~aL~~LH~~---~ivHrDlkp~NIll~~~g~~kL~D 153 (345)
T 3a8x_A 84 -RLFFVIEYVNGGDLMFHMQRQR------KLPEEHARFYSAEISLALNYLHER---GIIYRDLKLDNVLLDSEGHIKLTD 153 (345)
T ss_dssp -EEEEEECCCCSCBHHHHHHHHS------SCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCCGGGEEECTTSCEEECC
T ss_pred -EEEEEEeCCCCCcHHHHHHHcC------CCCHHHHHHHHHHHHHHHHHHHHC---CceecCCCHHHEEECCCCCEEEEe
Confidence 8999999999999999997654 689999999999999999999999 999999999999999999999999
Q ss_pred cccccccCcccccccccCCCccccccccccccCccccCCCCCCcccccccCCcCCCccccCCccHHHHHHHhCCCccccc
Q 040925 686 FGLAKFLSDHQLDTAVKTPSSSIGLKGTVGYVAPEYGMGSEASMTGDIFTGRRPIDAVFNEGHSLHEFAKTALPEKVMEI 765 (833)
Q Consensus 686 fG~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~s~~~~~~~~~~~g~~l~~~~~~~~p~~~~~~ 765 (833)
||+|+...... ......+||+.|+|||++.+..++.++|||| .|+++|+++++..|+.....
T Consensus 154 FG~a~~~~~~~--------~~~~~~~gt~~y~aPE~~~~~~~~~~~Diws----------lG~il~ell~g~~pf~~~~~ 215 (345)
T 3a8x_A 154 YGMCKEGLRPG--------DTTSTFCGTPNYIAPEILRGEDYGFSVDWWA----------LGVLMFEMMAGRSPFDIVGS 215 (345)
T ss_dssp GGGCBCSCCTT--------CCBCCCCSCGGGCCHHHHTTCCBCTHHHHHH----------HHHHHHHHHHSSCTTTTTTC
T ss_pred ccccccccCCC--------CcccccCCCccccCccccCCCCCChHHhHHH----------HHHHHHHHHhCCCCcCCccc
Confidence 99998533211 1123457999999999999999999999999 88899999999998753211
Q ss_pred cc------ccchhhhccccchhhhhhhhchHHHHHHHHHHhhccCCCCCCCCCCH
Q 040925 766 VD------PSLLMEVMTNNSMIQEDKRVKTEECLNAIIRTGVLCSMESPFERMDM 814 (833)
Q Consensus 766 ~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~ 814 (833)
.+ .......+... ....+..++..+.+++.+||+.||++||++
T Consensus 216 ~~~~~~~~~~~~~~~i~~~------~~~~p~~~s~~~~~li~~lL~~dP~~R~~~ 264 (345)
T 3a8x_A 216 SDNPDQNTEDYLFQVILEK------QIRIPRSLSVKAASVLKSFLNKDPKERLGC 264 (345)
T ss_dssp -------CHHHHHHHHHHC------CCCCCTTSCHHHHHHHHHHTCSSTTTSTTC
T ss_pred ccccccccHHHHHHHHHcC------CCCCCCCCCHHHHHHHHHHhcCCHhHCCCC
Confidence 11 00000000000 001122345678899999999999999996
No 84
>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A*
Probab=100.00 E-value=6.1e-39 Score=337.38 Aligned_cols=253 Identities=23% Similarity=0.356 Sum_probs=202.2
Q ss_pred cCCccCceeccCcceEEEEEEECCCceEEEEEEeeccCCcc-------hhHHHHHHHHHhhcCCCccceEeeEeecCCCC
Q 040925 531 GEFSSSNMIGQGSFGYVYKGTLGEDEMIVAVKVINLKYKGA-------SRSFVAECEALRNIRHRNLIKIITICSSTDFK 603 (833)
Q Consensus 531 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~-------~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~ 603 (833)
++|++.+.||+|+||.||+|++..+++.||+|++....... .+.+.+|++++++++||||+++++++....
T Consensus 19 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~-- 96 (287)
T 4f0f_A 19 NEIEYEKQIGKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEFQREVFIMSNLNHPNIVKLYGLMHNPP-- 96 (287)
T ss_dssp TTEEEEEECCCCSSSCEEEEEETTTCCEEEEEECCCCTTTCCHHHHCCSHHHHHHHHHHTTCCCTTBCCEEEEETTTT--
T ss_pred ccceehhccccCCceeEEEEEEcCCceEEEEEEeeccccccchhHHHHHHHHHHHHHHHHhCCCCCchhhheeecCCC--
Confidence 57999999999999999999999999999999996543221 167899999999999999999999974432
Q ss_pred CCceEeEEEEecCCCChhhhhccCCCccccccCCHHHHHHHHHHHHHHHHHHhhcCCCC--ceeeCCCCCCeeecCCCc-
Q 040925 604 GTDFKAFVFEYMENGSLKDWLHQSDDQVEVCKLSLIQRVNIAIDVASAMEYLHHHCQPP--MVHGDLKPSNVLLDHDMV- 680 (833)
Q Consensus 604 ~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~gL~~LH~~~~~~--ivH~Dlkp~NIll~~~~~- 680 (833)
++||||+++|+|.+++..... .+++..++.++.|++.||+|||+. + |+||||||+||+++.++.
T Consensus 97 -----~lv~e~~~~~~L~~~l~~~~~-----~~~~~~~~~~~~~l~~~l~~lH~~---~~~ivH~dikp~Nil~~~~~~~ 163 (287)
T 4f0f_A 97 -----RMVMEFVPCGDLYHRLLDKAH-----PIKWSVKLRLMLDIALGIEYMQNQ---NPPIVHRDLRSPNIFLQSLDEN 163 (287)
T ss_dssp -----EEEEECCTTCBHHHHHHCTTS-----CCCHHHHHHHHHHHHHHHHHHHTS---SSCCBCSCCSGGGEEESCCCTT
T ss_pred -----eEEEEecCCCCHHHHHhcccC-----CccHHHHHHHHHHHHHHHHHHHhC---CCCeecCCCCcceEEEeccCCC
Confidence 699999999999998876542 689999999999999999999999 8 999999999999988776
Q ss_pred ----EEEcccccccccCcccccccccCCCccccccccccccCcccc--CCCCCCcccccccCCcCCCccccCCccHHHHH
Q 040925 681 ----AHVCDFGLAKFLSDHQLDTAVKTPSSSIGLKGTVGYVAPEYG--MGSEASMTGDIFTGRRPIDAVFNEGHSLHEFA 754 (833)
Q Consensus 681 ----~kL~DfG~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~--~~~~~~~~~Di~s~~~~~~~~~~~g~~l~~~~ 754 (833)
+||+|||+++..... .....||+.|+|||++ ....++.++|||| .|+++++++
T Consensus 164 ~~~~~kl~Dfg~~~~~~~~-----------~~~~~g~~~y~aPE~~~~~~~~~~~~~Di~s----------lG~~l~~l~ 222 (287)
T 4f0f_A 164 APVCAKVADFGLSQQSVHS-----------VSGLLGNFQWMAPETIGAEEESYTEKADTYS----------FAMILYTIL 222 (287)
T ss_dssp CSCCEEECCCTTCBCCSSC-----------EECCCCCCTTSCGGGSSCSSCEECHHHHHHH----------HHHHHHHHH
T ss_pred CceeEEeCCCCcccccccc-----------ccccCCCccccCchhhccCCCCcCchhhHHH----------HHHHHHHHH
Confidence 999999999754332 1234699999999998 4556789999999 888999999
Q ss_pred HHhCCCcccccccccchhhhccccchhhhhhhhchHHHHHHHHHHhhccCCCCCCCCCCHHHHHHHHHHh
Q 040925 755 KTALPEKVMEIVDPSLLMEVMTNNSMIQEDKRVKTEECLNAIIRTGVLCSMESPFERMDMRDVVAKLCHT 824 (833)
Q Consensus 755 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~i 824 (833)
++..|+......+............ ....+..+++.+.+++.+||+.||++|||++|+++.|+++
T Consensus 223 ~g~~pf~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~L~~l 287 (287)
T 4f0f_A 223 TGEGPFDEYSYGKIKFINMIREEGL-----RPTIPEDCPPRLRNVIELCWSGDPKKRPHFSYIVKELSEL 287 (287)
T ss_dssp HSSCTTTTCCCCHHHHHHHHHHSCC-----CCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTC
T ss_pred cCCCCCccccccHHHHHHHHhccCC-----CCCCCcccCHHHHHHHHHHhcCChhhCcCHHHHHHHHHhC
Confidence 9998876322211111111111100 1112234567889999999999999999999999999864
No 85
>2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A*
Probab=100.00 E-value=2.2e-38 Score=336.55 Aligned_cols=280 Identities=28% Similarity=0.414 Sum_probs=218.4
Q ss_pred CCCccchHHHHHHhcCCccC------ceeccCcceEEEEEEECCCceEEEEEEeeccC----CcchhHHHHHHHHHhhcC
Q 040925 517 QFPMVSYAELSKATGEFSSS------NMIGQGSFGYVYKGTLGEDEMIVAVKVINLKY----KGASRSFVAECEALRNIR 586 (833)
Q Consensus 517 ~~~~~~~~~~~~~~~~y~~~------~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~----~~~~~~~~~E~~~l~~l~ 586 (833)
....+++.++..++++|... +.||+|+||.||+|++ +++.||||++.... ....+.+.+|+.++++++
T Consensus 11 ~~~~~~~~~l~~~~~~f~~~~~~~~~~~lg~G~~g~Vy~~~~--~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~ 88 (307)
T 2nru_A 11 RFHSFSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYV--NNTTVAVKKLAAMVDITTEELKQQFDQEIKVMAKCQ 88 (307)
T ss_dssp CCEECCHHHHHHHTTTTCCSBTTTTCCEEEECSSEEEEEEES--SSCEEEEEEECCCTTSCTTTHHHHHHHHHHHHHHCC
T ss_pred CCCcccHHHHHHHHcccccccccccCCccccCCCeEEEEEEE--CCceEEEEEEecccCcchHHHHHHHHHHHHHHHhcC
Confidence 35678999999999998877 8999999999999987 57889999986432 233567899999999999
Q ss_pred CCccceEeeEeecCCCCCCceEeEEEEecCCCChhhhhccCCCccccccCCHHHHHHHHHHHHHHHHHHhhcCCCCceee
Q 040925 587 HRNLIKIITICSSTDFKGTDFKAFVFEYMENGSLKDWLHQSDDQVEVCKLSLIQRVNIAIDVASAMEYLHHHCQPPMVHG 666 (833)
Q Consensus 587 h~niv~~~~~~~~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~gL~~LH~~~~~~ivH~ 666 (833)
||||+++++++...+ ..++||||+++|+|.+++...... ..+++..++.++.|++.||+|||+. +|+||
T Consensus 89 h~~i~~~~~~~~~~~-----~~~lv~e~~~~~~L~~~l~~~~~~---~~~~~~~~~~i~~~i~~~l~~lH~~---~i~H~ 157 (307)
T 2nru_A 89 HENLVELLGFSSDGD-----DLCLVYVYMPNGSLLDRLSCLDGT---PPLSWHMRCKIAQGAANGINFLHEN---HHIHR 157 (307)
T ss_dssp CTTBCCEEEEECSSS-----SCEEEEECCTTCBHHHHHHTGGGC---CCCCHHHHHHHHHHHHHHHHHHHHT---TEECS
T ss_pred CCCeEEEEEEEecCC-----ceEEEEEecCCCcHHHHHHhccCC---CCCCHHHHHHHHHHHHHHHHHHhcC---CeecC
Confidence 999999999976544 789999999999999999754321 2689999999999999999999999 99999
Q ss_pred CCCCCCeeecCCCcEEEcccccccccCcccccccccCCCccccccccccccCccccCCCCCCcccccccCCcCCCccccC
Q 040925 667 DLKPSNVLLDHDMVAHVCDFGLAKFLSDHQLDTAVKTPSSSIGLKGTVGYVAPEYGMGSEASMTGDIFTGRRPIDAVFNE 746 (833)
Q Consensus 667 Dlkp~NIll~~~~~~kL~DfG~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~s~~~~~~~~~~~ 746 (833)
||||+||+++.++.+||+|||+++........ .......||+.|+|||++.+ .++.++|||| +
T Consensus 158 dlkp~Nili~~~~~~kl~Dfg~~~~~~~~~~~------~~~~~~~g~~~y~aPE~~~~-~~~~~~Dv~s----------l 220 (307)
T 2nru_A 158 DIKSANILLDEAFTAKISDFGLARASEKFAQT------VMTSRIVGTTAYMAPEALRG-EITPKSDIYS----------F 220 (307)
T ss_dssp CCCGGGEEECTTCCEEECCCTTCEECCSCSSC------EECSSCCSCGGGCCHHHHTT-EECTHHHHHH----------H
T ss_pred CCCHHHEEEcCCCcEEEeeccccccccccccc------ccccccCCCcCcCChHHhcC-CCCccchhHH----------H
Confidence 99999999999999999999999865432211 11123469999999998765 5889999999 8
Q ss_pred CccHHHHHHHhCCCcccccccc--cchhhhccccch----hhhhhhhchHHHHHHHHHHhhccCCCCCCCCCCHHHHHHH
Q 040925 747 GHSLHEFAKTALPEKVMEIVDP--SLLMEVMTNNSM----IQEDKRVKTEECLNAIIRTGVLCSMESPFERMDMRDVVAK 820 (833)
Q Consensus 747 g~~l~~~~~~~~p~~~~~~~~~--~~~~~~~~~~~~----~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~ 820 (833)
|+++++++++..|+........ .+.......... ...........++..+.+++.+||+.||++|||++++++.
T Consensus 221 G~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~l~~~ 300 (307)
T 2nru_A 221 GVVLLEIITGLPAVDEHREPQLLLDIKEEIEDEEKTIEDYIDKKMNDADSTSVEAMYSVASQCLHEKKNKRPDIKKVQQL 300 (307)
T ss_dssp HHHHHHHHHCCCSBCTTBSSSBTTHHHHHHHTTSCCHHHHSCSSCSCCCHHHHHHHHHHHHHHTCSSTTTSCCHHHHHHH
T ss_pred HHHHHHHHHCCCCcccCcchHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHcCCCcccCcCHHHHHHH
Confidence 8899999999888753221110 000000000000 0001112345677889999999999999999999999999
Q ss_pred HHHhhh
Q 040925 821 LCHTRE 826 (833)
Q Consensus 821 L~~i~~ 826 (833)
|+++..
T Consensus 301 L~~l~~ 306 (307)
T 2nru_A 301 LQEMTA 306 (307)
T ss_dssp HHHHC-
T ss_pred HHHHhc
Confidence 998864
No 86
>3vhe_A Vascular endothelial growth factor receptor 2; kinase domain, kinase, transferase-transferase inhibitor COM; HET: 42Q; 1.55A {Homo sapiens} PDB: 1y6a_A* 1y6b_A* 3vhk_A* 3vid_A* 3hng_A*
Probab=100.00 E-value=9.8e-40 Score=355.30 Aligned_cols=278 Identities=20% Similarity=0.297 Sum_probs=214.7
Q ss_pred cchHHHHHHhcCCccCceeccCcceEEEEEE-----ECCCceEEEEEEeeccCC-cchhHHHHHHHHHhhc-CCCccceE
Q 040925 521 VSYAELSKATGEFSSSNMIGQGSFGYVYKGT-----LGEDEMIVAVKVINLKYK-GASRSFVAECEALRNI-RHRNLIKI 593 (833)
Q Consensus 521 ~~~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~-----~~~~~~~vavK~~~~~~~-~~~~~~~~E~~~l~~l-~h~niv~~ 593 (833)
+....+....++|++.+.||+|+||.||+|+ ...+++.||||+++.... ...+.+.+|+++++++ +||||+++
T Consensus 12 ~~~~~~~~~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hpniv~~ 91 (359)
T 3vhe_A 12 YDASKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNL 91 (359)
T ss_dssp CCHHHHBCCGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCE
T ss_pred CCcccccccccceeeceeecCCCCceEEEEEeccccccccceEEEEEEecCcCCHHHHHHHHHHHHHHHhhcCCcceeee
Confidence 4556666778899999999999999999998 455779999999975432 2346789999999999 79999999
Q ss_pred eeEeecCCCCCCceEeEEEEecCCCChhhhhccCCCcc------------------------------------------
Q 040925 594 ITICSSTDFKGTDFKAFVFEYMENGSLKDWLHQSDDQV------------------------------------------ 631 (833)
Q Consensus 594 ~~~~~~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~------------------------------------------ 631 (833)
++++...+ ...++||||+++|+|.+++.......
T Consensus 92 ~~~~~~~~----~~~~iv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (359)
T 3vhe_A 92 LGACTKPG----GPLMVIVEFCKFGNLSTYLRSKRNEFVPYKTKGARFRQGKDYVGAIPVDLKRRLDSITSSQSSASSGF 167 (359)
T ss_dssp EEEECSTT----SCCEEEEECCTTEEHHHHHHTTTTSBCSCC--------------------------------------
T ss_pred eeeeecCC----CceEEEEEecCCCcHHHHHHhccccccccccccchhhcccccccccchhhhccccccCcccccccccc
Confidence 99986543 35899999999999999998754210
Q ss_pred ------------------ccccCCHHHHHHHHHHHHHHHHHHhhcCCCCceeeCCCCCCeeecCCCcEEEcccccccccC
Q 040925 632 ------------------EVCKLSLIQRVNIAIDVASAMEYLHHHCQPPMVHGDLKPSNVLLDHDMVAHVCDFGLAKFLS 693 (833)
Q Consensus 632 ------------------~~~~l~~~~~~~i~~qi~~gL~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kL~DfG~a~~~~ 693 (833)
....+++..++.++.|++.||+|||+. +|+||||||+||+++.++.+||+|||+++...
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ql~~aL~~LH~~---~ivH~Dikp~NIll~~~~~~kl~Dfg~a~~~~ 244 (359)
T 3vhe_A 168 VEEKSLSDVEEEEAPEDLYKDFLTLEHLICYSFQVAKGMEFLASR---KCIHRDLAARNILLSEKNVVKICDFGLARDIY 244 (359)
T ss_dssp ----------------CTTTTCBCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECGGGCEEECCCGGGSCTT
T ss_pred ccccccchhhhcccccchhccccCHHHHHHHHHHHHHHHHHHHHC---CcccCCCChhhEEEcCCCcEEEEeccceeeec
Confidence 011289999999999999999999999 99999999999999999999999999998664
Q ss_pred cccccccccCCCccccccccccccCccccCCCCCCcccccccCCcCCCccccCCccHHHHHH-HhCCCcccccccccchh
Q 040925 694 DHQLDTAVKTPSSSIGLKGTVGYVAPEYGMGSEASMTGDIFTGRRPIDAVFNEGHSLHEFAK-TALPEKVMEIVDPSLLM 772 (833)
Q Consensus 694 ~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~s~~~~~~~~~~~g~~l~~~~~-~~~p~~~~~~~~~~~~~ 772 (833)
..... .......||+.|+|||++.+..++.++|||| +|++++++++ +..|+...... .....
T Consensus 245 ~~~~~------~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~s----------lG~il~ellt~g~~p~~~~~~~-~~~~~ 307 (359)
T 3vhe_A 245 KDPDY------VRKGDARLPLKWMAPETIFDRVYTIQSDVWS----------FGVLLWEIFSLGASPYPGVKID-EEFCR 307 (359)
T ss_dssp SCTTC------EEC--CEECGGGCCHHHHHHCCCCHHHHHHH----------HHHHHHHHTTTSCCSSTTCCCS-HHHHH
T ss_pred ccccc------hhccccCCCceeEChhhhcCCCCCchhhhhh----------HHHHHHHHHhcCCCCCCccchh-HHHHH
Confidence 32211 1122346899999999999999999999999 7778888887 77776422111 11111
Q ss_pred hhccccchhhhhhhhchHHHHHHHHHHhhccCCCCCCCCCCHHHHHHHHHHhhhhh
Q 040925 773 EVMTNNSMIQEDKRVKTEECLNAIIRTGVLCSMESPFERMDMRDVVAKLCHTRETF 828 (833)
Q Consensus 773 ~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~i~~~~ 828 (833)
...... ....+..+++.+.+++.+||+.||++|||++|++++|+++.+..
T Consensus 308 ~~~~~~------~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~~~~~~ 357 (359)
T 3vhe_A 308 RLKEGT------RMRAPDYTTPEMYQTMLDCWHGEPSQRPTFSELVEHLGNLLQAN 357 (359)
T ss_dssp HHHHTC------CCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHH
T ss_pred HHHcCC------CCCCCCCCCHHHHHHHHHHccCChhhCCCHHHHHHHHHHHHHHh
Confidence 000000 01112234567889999999999999999999999999988653
No 87
>3txo_A PKC-L, NPKC-ETA, protein kinase C ETA type; phosphotransferase, transferase-transferase inhibito; HET: TPO 07U; 2.05A {Homo sapiens}
Probab=100.00 E-value=1.3e-39 Score=350.82 Aligned_cols=252 Identities=22% Similarity=0.262 Sum_probs=200.2
Q ss_pred HHhcCCccCceeccCcceEEEEEEECCCceEEEEEEeecc---CCcchhHHHHHHHHHhhc-CCCccceEeeEeecCCCC
Q 040925 528 KATGEFSSSNMIGQGSFGYVYKGTLGEDEMIVAVKVINLK---YKGASRSFVAECEALRNI-RHRNLIKIITICSSTDFK 603 (833)
Q Consensus 528 ~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~---~~~~~~~~~~E~~~l~~l-~h~niv~~~~~~~~~~~~ 603 (833)
...++|++.+.||+|+||.||+|++..+++.||||+++.. .....+.+.+|.++++.+ +||||+++++++...+
T Consensus 20 ~~~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AvK~~~~~~~~~~~~~~~~~~E~~il~~~~~hp~Iv~l~~~~~~~~-- 97 (353)
T 3txo_A 20 LGIDNFEFIRVLGKGSFGKVMLARVKETGDLYAVKVLKKDVILQDDDVECTMTEKRILSLARNHPFLTQLFCCFQTPD-- 97 (353)
T ss_dssp ---CCEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHHTTHHHHHHHHHHHHHTTTCTTBCCEEEEEECSS--
T ss_pred CchhheEEEEEEeeCCCEEEEEEEEcCCCCEEEEEEEEHHHhcchhHHHHHHHHHHHHHhccCCCceeeEEEEEEeCC--
Confidence 3457899999999999999999999999999999999743 223446688999999998 6999999999976655
Q ss_pred CCceEeEEEEecCCCChhhhhccCCCccccccCCHHHHHHHHHHHHHHHHHHhhcCCCCceeeCCCCCCeeecCCCcEEE
Q 040925 604 GTDFKAFVFEYMENGSLKDWLHQSDDQVEVCKLSLIQRVNIAIDVASAMEYLHHHCQPPMVHGDLKPSNVLLDHDMVAHV 683 (833)
Q Consensus 604 ~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~gL~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kL 683 (833)
..|+||||+++|+|.+++.... .+++.+++.++.||+.||+|||+. +|+||||||+||+++.++.+||
T Consensus 98 ---~~~lv~E~~~gg~L~~~l~~~~------~~~~~~~~~~~~qi~~aL~~LH~~---givHrDlkp~NILl~~~g~ikL 165 (353)
T 3txo_A 98 ---RLFFVMEFVNGGDLMFHIQKSR------RFDEARARFYAAEIISALMFLHDK---GIIYRDLKLDNVLLDHEGHCKL 165 (353)
T ss_dssp ---EEEEEEECCCSCBHHHHHHHHS------SCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCCGGGEEECTTSCEEE
T ss_pred ---EEEEEEeCCCCCcHHHHHHHcC------CCCHHHHHHHHHHHHHHHHHHHHC---CCcccCCCHHHEEECCCCCEEE
Confidence 8999999999999999998654 699999999999999999999999 9999999999999999999999
Q ss_pred cccccccccCcccccccccCCCccccccccccccCccccCCCCCCcccccccCCcCCCccccCCccHHHHHHHhCCCccc
Q 040925 684 CDFGLAKFLSDHQLDTAVKTPSSSIGLKGTVGYVAPEYGMGSEASMTGDIFTGRRPIDAVFNEGHSLHEFAKTALPEKVM 763 (833)
Q Consensus 684 ~DfG~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~s~~~~~~~~~~~g~~l~~~~~~~~p~~~~ 763 (833)
+|||+|+...... ......+||+.|+|||++.+..++.++|||| .|+++|+++++..|+...
T Consensus 166 ~DFG~a~~~~~~~--------~~~~~~~gt~~y~aPE~~~~~~~~~~~Diws----------lG~il~ell~G~~Pf~~~ 227 (353)
T 3txo_A 166 ADFGMCKEGICNG--------VTTATFCGTPDYIAPEILQEMLYGPAVDWWA----------MGVLLYEMLCGHAPFEAE 227 (353)
T ss_dssp CCCTTCBCSCC-----------------CCGGGCCHHHHHHHHCTTHHHHHH----------HHHHHHHHHHSSCSSCCS
T ss_pred ccccceeecccCC--------ccccccCCCcCeEChhhcCCCCcCCccCCCc----------chHHHHHHHhCCCCCCCC
Confidence 9999998543221 1123457999999999999889999999999 888999999999997632
Q ss_pred ccccccchhhhccccchhhhhhhhchHHHHHHHHHHhhccCCCCCCCCCCH------HHHHHH
Q 040925 764 EIVDPSLLMEVMTNNSMIQEDKRVKTEECLNAIIRTGVLCSMESPFERMDM------RDVVAK 820 (833)
Q Consensus 764 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~------~eil~~ 820 (833)
... ........... ..+...++.+.+++.+||..||++||++ +|++++
T Consensus 228 ~~~--~~~~~i~~~~~-------~~p~~~~~~~~~li~~lL~~dP~~R~~~~~~~~~~~il~h 281 (353)
T 3txo_A 228 NED--DLFEAILNDEV-------VYPTWLHEDATGILKSFMTKNPTMRLGSLTQGGEHAILRH 281 (353)
T ss_dssp SHH--HHHHHHHHCCC-------CCCTTSCHHHHHHHHHHTCSSGGGSTTSGGGTCTHHHHTS
T ss_pred CHH--HHHHHHHcCCC-------CCCCCCCHHHHHHHHHHhhhCHHHccCCcccCCHHHHhhC
Confidence 211 11111111111 1112245668899999999999999998 777653
No 88
>3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus}
Probab=100.00 E-value=5.1e-39 Score=345.74 Aligned_cols=266 Identities=24% Similarity=0.313 Sum_probs=200.4
Q ss_pred HhcCCccCceeccCcceEEEEEEECCCceEEEEEEeeccCC-cchhHHHHHHHHHhhcCCCccceEeeEeecCCC-----
Q 040925 529 ATGEFSSSNMIGQGSFGYVYKGTLGEDEMIVAVKVINLKYK-GASRSFVAECEALRNIRHRNLIKIITICSSTDF----- 602 (833)
Q Consensus 529 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~-~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~----- 602 (833)
..++|++.+.||+|+||.||+|++..+++.||||+++.... ...+.+.+|++++++++||||+++++++.+...
T Consensus 4 ~~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~ 83 (332)
T 3qd2_B 4 YLTDFEPIQCMGRGGFGVVFEAKNKVDDCNYAIKRIRLPNRELAREKVMREVKALAKLEHPGIVRYFNAWLETPPEKWQE 83 (332)
T ss_dssp HHHHEEEEEEEECC-CSEEEEEEETTTCCEEEEEEEECCSTTTHHHHHHHHHHHHTSCCCTTBCCEEEEEEECCSCHHHH
T ss_pred hhhcCceeeEecCCCCeEEEEEEEcCCCcEEEEEEeecCCchhHHHHHHHHHHHHHhCCCCCEeeEEEEEEEeccchhhh
Confidence 34679999999999999999999999999999999975433 345789999999999999999999999855431
Q ss_pred -----------------------------------------------CCCceEeEEEEecCCCChhhhhccCCCcccccc
Q 040925 603 -----------------------------------------------KGTDFKAFVFEYMENGSLKDWLHQSDDQVEVCK 635 (833)
Q Consensus 603 -----------------------------------------------~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~ 635 (833)
......++||||+++|+|.+++...... ..
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~---~~ 160 (332)
T 3qd2_B 84 EMDEIWLKDESTDWPLSSPSPMDAPSVKIRRMDPFSTKNTVGQLQPSSPKVYLYIQMQLCRKENLKDWMNRRCSL---ED 160 (332)
T ss_dssp HHHC--------------------------------------------CCCEEEEEEECCCSSCHHHHHHTCCSG---GG
T ss_pred hhhhhhhccccccccccCCCcccccccceeeccccCcccccccccCCCCCceEEEEEEecCCCCHHHHHhcccCc---cc
Confidence 1123489999999999999999876532 24
Q ss_pred CCHHHHHHHHHHHHHHHHHHhhcCCCCceeeCCCCCCeeecCCCcEEEcccccccccCccccccccc----CCCcccccc
Q 040925 636 LSLIQRVNIAIDVASAMEYLHHHCQPPMVHGDLKPSNVLLDHDMVAHVCDFGLAKFLSDHQLDTAVK----TPSSSIGLK 711 (833)
Q Consensus 636 l~~~~~~~i~~qi~~gL~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kL~DfG~a~~~~~~~~~~~~~----~~~~~~~~~ 711 (833)
.++..++.++.|++.||+|||+. +|+||||||+||+++.++.+||+|||+++............ .........
T Consensus 161 ~~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dlkp~NIll~~~~~~kL~DfG~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (332)
T 3qd2_B 161 REHGVCLHIFIQIAEAVEFLHSK---GLMHRDLKPSNIFFTMDDVVKVGDFGLVTAMDQDEEEQTVLTPMPAYATHTGQV 237 (332)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTCCEEECCCTTCEECSCC--------------CCCSCC
T ss_pred hhhHHHHHHHHHHHHHHHHHHhC---CeeecCCCcccEEEeCCCCEEEeecCcccccccchhhccccccccccccccccC
Confidence 67778999999999999999999 99999999999999999999999999998775542211100 011223457
Q ss_pred ccccccCccccCCCCCCcccccccCCcCCCccccCCccHHHHHHHhCCCcccccccccchhhhccccchhhhhhhhchHH
Q 040925 712 GTVGYVAPEYGMGSEASMTGDIFTGRRPIDAVFNEGHSLHEFAKTALPEKVMEIVDPSLLMEVMTNNSMIQEDKRVKTEE 791 (833)
Q Consensus 712 gt~~y~aPE~~~~~~~~~~~Di~s~~~~~~~~~~~g~~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 (833)
||+.|+|||++.+..++.++|||| .|+++++++++..+..... ......... ........
T Consensus 238 gt~~y~aPE~~~~~~~~~~~Di~s----------lG~il~el~~~~~~~~~~~----~~~~~~~~~------~~~~~~~~ 297 (332)
T 3qd2_B 238 GTKLYMSPEQIHGNNYSHKVDIFS----------LGLILFELLYSFSTQMERV----RIITDVRNL------KFPLLFTQ 297 (332)
T ss_dssp -CGGGSCHHHHHCCCCCTHHHHHH----------HHHHHHHHHSCCCCHHHHH----HHHHHHHTT------CCCHHHHH
T ss_pred CCcCccChHHhcCCCCcchhhHHH----------HHHHHHHHHHcCCChhHHH----HHHHHhhcc------CCCccccc
Confidence 999999999999999999999999 6777777776544422100 000000000 01112234
Q ss_pred HHHHHHHHhhccCCCCCCCCCCHHHHHHH
Q 040925 792 CLNAIIRTGVLCSMESPFERMDMRDVVAK 820 (833)
Q Consensus 792 ~~~~l~~li~~cl~~dP~~RPt~~eil~~ 820 (833)
..+.+.+++.+||+.||++|||++|+++.
T Consensus 298 ~~~~~~~li~~~l~~~p~~Rps~~~~l~~ 326 (332)
T 3qd2_B 298 KYPQEHMMVQDMLSPSPTERPEATDIIEN 326 (332)
T ss_dssp HCHHHHHHHHHHHCSSGGGSCCHHHHHHS
T ss_pred CChhHHHHHHHHccCCCCcCCCHHHHhhc
Confidence 55677899999999999999999999863
No 89
>2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated, transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A* 2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B
Probab=100.00 E-value=4.9e-39 Score=348.37 Aligned_cols=254 Identities=20% Similarity=0.261 Sum_probs=204.9
Q ss_pred HhcCCccCceeccCcceEEEEEEECCCceEEEEEEeeccCC--cchhHHHHHHHHHhhcCCCccceEeeEeecCCCCCCc
Q 040925 529 ATGEFSSSNMIGQGSFGYVYKGTLGEDEMIVAVKVINLKYK--GASRSFVAECEALRNIRHRNLIKIITICSSTDFKGTD 606 (833)
Q Consensus 529 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~--~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~ 606 (833)
..++|++.+.||+|+||.||+|.+..+++.||+|+++.... ...+.+.+|++++++++||||+++++++.+.+
T Consensus 27 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~----- 101 (362)
T 2bdw_A 27 FSDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRKLQHPNIVRLHDSIQEES----- 101 (362)
T ss_dssp HHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEECSS-----
T ss_pred cccCeEEeeEEecCCCeEEEEEEECCCCCEEEEEEEEcccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCC-----
Confidence 45689999999999999999999999999999999975432 23467889999999999999999999976654
Q ss_pred eEeEEEEecCCCChhhhhccCCCccccccCCHHHHHHHHHHHHHHHHHHhhcCCCCceeeCCCCCCeeecCC---CcEEE
Q 040925 607 FKAFVFEYMENGSLKDWLHQSDDQVEVCKLSLIQRVNIAIDVASAMEYLHHHCQPPMVHGDLKPSNVLLDHD---MVAHV 683 (833)
Q Consensus 607 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~gL~~LH~~~~~~ivH~Dlkp~NIll~~~---~~~kL 683 (833)
..++||||+++|+|.+++.... .+++..+..++.||+.||+|||+. +|+||||||+||+++.+ +.+||
T Consensus 102 ~~~lv~e~~~gg~L~~~l~~~~------~~~~~~~~~~~~qi~~al~~lH~~---~ivH~Dlkp~NIll~~~~~~~~~kl 172 (362)
T 2bdw_A 102 FHYLVFDLVTGGELFEDIVARE------FYSEADASHCIQQILESIAYCHSN---GIVHRNLKPENLLLASKAKGAAVKL 172 (362)
T ss_dssp EEEEEECCCCSCBHHHHHTTCS------CCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCSGGGEEESCSSTTCCEEE
T ss_pred EEEEEEecCCCCCHHHHHHHcC------CCCHHHHHHHHHHHHHHHHHHHHC---CeEeccCchHHEEEecCCCCCCEEE
Confidence 8999999999999999997654 689999999999999999999999 99999999999999865 45999
Q ss_pred cccccccccCcccccccccCCCccccccccccccCccccCCCCCCcccccccCCcCCCccccCCccHHHHHHHhCCCccc
Q 040925 684 CDFGLAKFLSDHQLDTAVKTPSSSIGLKGTVGYVAPEYGMGSEASMTGDIFTGRRPIDAVFNEGHSLHEFAKTALPEKVM 763 (833)
Q Consensus 684 ~DfG~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~s~~~~~~~~~~~g~~l~~~~~~~~p~~~~ 763 (833)
+|||++....... ......||+.|+|||++.+..++.++|||| .|+++|+++++..|+...
T Consensus 173 ~DfG~a~~~~~~~---------~~~~~~gt~~y~aPE~~~~~~~~~~~Diws----------lG~il~~ll~g~~Pf~~~ 233 (362)
T 2bdw_A 173 ADFGLAIEVNDSE---------AWHGFAGTPGYLSPEVLKKDPYSKPVDIWA----------CGVILYILLVGYPPFWDE 233 (362)
T ss_dssp CCCTTCBCCTTCC---------SCCCSCSCTTTCCHHHHTTCCCCTHHHHHH----------HHHHHHHHHHSSCSSCCS
T ss_pred eecCcceEecCCc---------ccccCCCCccccCHHHHccCCCCchhhHHH----------HHHHHHHHHHCCCCCCCC
Confidence 9999998665322 112356999999999999999999999999 888999999999887532
Q ss_pred ccccccchhhhccccchhhhhhhhchHHHHHHHHHHhhccCCCCCCCCCCHHHHHHH
Q 040925 764 EIVDPSLLMEVMTNNSMIQEDKRVKTEECLNAIIRTGVLCSMESPFERMDMRDVVAK 820 (833)
Q Consensus 764 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~ 820 (833)
+. .............. .......+++.+.+++.+||..||++|||+.|+++.
T Consensus 234 ~~--~~~~~~i~~~~~~~---~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~h 285 (362)
T 2bdw_A 234 DQ--HRLYAQIKAGAYDY---PSPEWDTVTPEAKSLIDSMLTVNPKKRITADQALKV 285 (362)
T ss_dssp SH--HHHHHHHHHTCCCC---CTTGGGGSCHHHHHHHHHHSCSSGGGSCCHHHHTTS
T ss_pred CH--HHHHHHHHhCCCCC---CcccccCCCHHHHHHHHHHcCCChhhCcCHHHHhcC
Confidence 21 11111111111100 011122346678899999999999999999999865
No 90
>1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7
Probab=100.00 E-value=5.7e-39 Score=349.81 Aligned_cols=254 Identities=19% Similarity=0.236 Sum_probs=205.7
Q ss_pred hcCCccCceeccCcceEEEEEEECCCceEEEEEEeeccCCcchhHHHHHHHHHhhcCCCccceEeeEeecCCCCCCceEe
Q 040925 530 TGEFSSSNMIGQGSFGYVYKGTLGEDEMIVAVKVINLKYKGASRSFVAECEALRNIRHRNLIKIITICSSTDFKGTDFKA 609 (833)
Q Consensus 530 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~~ 609 (833)
.++|++.+.||+|+||.||+|.+..+++.||+|++..........+.+|++++++++||||+++++++.... ..+
T Consensus 50 ~~~y~i~~~LG~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~-----~~~ 124 (387)
T 1kob_A 50 YDYYDILEELGSGAFGVVHRCVEKATGRVFVAKFINTPYPLDKYTVKNEISIMNQLHHPKLINLHDAFEDKY-----EMV 124 (387)
T ss_dssp GGTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHTTCCSTTBCCEEEEEECSS-----EEE
T ss_pred ccceEEEEEEecCCCEEEEEEEECCCCCEEEEEEecccchhhHHHHHHHHHHHHhCCCcCCCeEEEEEEeCC-----EEE
Confidence 468999999999999999999999999999999997654445567899999999999999999999976554 899
Q ss_pred EEEEecCCCChhhhhccCCCccccccCCHHHHHHHHHHHHHHHHHHhhcCCCCceeeCCCCCCeeecC--CCcEEEcccc
Q 040925 610 FVFEYMENGSLKDWLHQSDDQVEVCKLSLIQRVNIAIDVASAMEYLHHHCQPPMVHGDLKPSNVLLDH--DMVAHVCDFG 687 (833)
Q Consensus 610 lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~gL~~LH~~~~~~ivH~Dlkp~NIll~~--~~~~kL~DfG 687 (833)
+||||+++|+|.+++..... .+++.+++.++.|++.||+|||+. +|+||||||+||+++. ++.+||+|||
T Consensus 125 lv~E~~~gg~L~~~l~~~~~-----~l~~~~~~~i~~qi~~aL~~LH~~---givHrDlkp~NIll~~~~~~~vkL~DFG 196 (387)
T 1kob_A 125 LILEFLSGGELFDRIAAEDY-----KMSEAEVINYMRQACEGLKHMHEH---SIVHLDIKPENIMCETKKASSVKIIDFG 196 (387)
T ss_dssp EEEECCCCCBHHHHTTCTTC-----CBCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEESSTTCCCEEECCCT
T ss_pred EEEEcCCCCcHHHHHHhhcC-----CCCHHHHHHHHHHHHHHHHHHHhC---CeeecccchHHeEEecCCCCceEEEecc
Confidence 99999999999999976532 589999999999999999999999 9999999999999974 4789999999
Q ss_pred cccccCcccccccccCCCccccccccccccCccccCCCCCCcccccccCCcCCCccccCCccHHHHHHHhCCCccccccc
Q 040925 688 LAKFLSDHQLDTAVKTPSSSIGLKGTVGYVAPEYGMGSEASMTGDIFTGRRPIDAVFNEGHSLHEFAKTALPEKVMEIVD 767 (833)
Q Consensus 688 ~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~s~~~~~~~~~~~g~~l~~~~~~~~p~~~~~~~~ 767 (833)
+|+....... .....||+.|+|||++.+..++.++|||| .|+++++++++..|+......
T Consensus 197 ~a~~~~~~~~---------~~~~~gt~~y~aPE~~~~~~~~~~~DiwS----------lG~il~elltg~~Pf~~~~~~- 256 (387)
T 1kob_A 197 LATKLNPDEI---------VKVTTATAEFAAPEIVDREPVGFYTDMWA----------IGVLGYVLLSGLSPFAGEDDL- 256 (387)
T ss_dssp TCEECCTTSC---------EEEECSSGGGCCHHHHTTCCBCHHHHHHH----------HHHHHHHHHHSCCSSCCSSHH-
T ss_pred cceecCCCcc---------eeeeccCCCccCchhccCCCCCCcccEee----------HhHHHHHHHhCCCCCCCCCHH-
Confidence 9987644221 12246999999999999999999999999 888999999999887532211
Q ss_pred ccchhhhccccchhhhhhhhchHHHHHHHHHHhhccCCCCCCCCCCHHHHHHH
Q 040925 768 PSLLMEVMTNNSMIQEDKRVKTEECLNAIIRTGVLCSMESPFERMDMRDVVAK 820 (833)
Q Consensus 768 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~ 820 (833)
............. .......+++.+.+++.+||..||++|||++|+++.
T Consensus 257 -~~~~~i~~~~~~~---~~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~ell~h 305 (387)
T 1kob_A 257 -ETLQNVKRCDWEF---DEDAFSSVSPEAKDFIKNLLQKEPRKRLTVHDALEH 305 (387)
T ss_dssp -HHHHHHHHCCCCC---CSSTTTTSCHHHHHHHHTTSCSSGGGSCCHHHHHTS
T ss_pred -HHHHHHHhCCCCC---CccccccCCHHHHHHHHHHcCCChhHCcCHHHHhhC
Confidence 1111111111100 011122346678999999999999999999999874
No 91
>3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A
Probab=100.00 E-value=4.9e-39 Score=337.36 Aligned_cols=260 Identities=23% Similarity=0.371 Sum_probs=205.4
Q ss_pred HHhcCCccCceeccCcceEEEEEEECCCceEEEEEEeeccCCcchhHHHHHHHHHhhcCCCccceEeeEeecCCCCCCce
Q 040925 528 KATGEFSSSNMIGQGSFGYVYKGTLGEDEMIVAVKVINLKYKGASRSFVAECEALRNIRHRNLIKIITICSSTDFKGTDF 607 (833)
Q Consensus 528 ~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~ 607 (833)
...++|++.+.||+|+||.||+|.+. ++..||+|+++... ...+.+.+|++++++++||||+++++++.... .
T Consensus 21 ~~~~~y~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~-----~ 93 (283)
T 3gen_A 21 IDPKDLTFLKELGTGQFGVVKYGKWR-GQYDVAIKMIKEGS-MSEDEFIEEAKVMMNLSHEKLVQLYGVCTKQR-----P 93 (283)
T ss_dssp CCGGGEEEEEECC---CEEEEEEEET-TTEEEEEEEECTTS-BCHHHHHHHHHHHHTCCCTTBCCEEEEECSSS-----S
T ss_pred CCHHHHHhHhhcCCCCCceEEEEEEc-CCCeEEEEEecCCC-CCHHHHHHHHHHHhcCCCCCEeeEEEEEecCC-----C
Confidence 34568999999999999999999987 67889999997443 34567899999999999999999999975544 7
Q ss_pred EeEEEEecCCCChhhhhccCCCccccccCCHHHHHHHHHHHHHHHHHHhhcCCCCceeeCCCCCCeeecCCCcEEEcccc
Q 040925 608 KAFVFEYMENGSLKDWLHQSDDQVEVCKLSLIQRVNIAIDVASAMEYLHHHCQPPMVHGDLKPSNVLLDHDMVAHVCDFG 687 (833)
Q Consensus 608 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~gL~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kL~DfG 687 (833)
.++||||+++|+|.+++..... .+++.+++.++.|++.||+|||+. +|+||||||+||+++.++.+||+|||
T Consensus 94 ~~lv~e~~~~~~L~~~l~~~~~-----~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~dikp~Nili~~~~~~kl~Dfg 165 (283)
T 3gen_A 94 IFIITEYMANGCLLNYLREMRH-----RFQTQQLLEMCKDVCEAMEYLESK---QFLHRDLAARNCLVNDQGVVKVSDFG 165 (283)
T ss_dssp EEEEECCCTTCBHHHHHHCGGG-----CCCHHHHHHHHHHHHHHHHHHHHT---TCCCSSCSGGGEEECTTSCEEECSTT
T ss_pred eEEEEeccCCCcHHHHHHHhcc-----CCCHHHHHHHHHHHHHHHHHHHHC---CccCCCCccceEEEcCCCCEEEcccc
Confidence 8999999999999999976432 689999999999999999999999 99999999999999999999999999
Q ss_pred cccccCcccccccccCCCccccccccccccCccccCCCCCCcccccccCCcCCCccccCCccHHHHHH-HhCCCcccccc
Q 040925 688 LAKFLSDHQLDTAVKTPSSSIGLKGTVGYVAPEYGMGSEASMTGDIFTGRRPIDAVFNEGHSLHEFAK-TALPEKVMEIV 766 (833)
Q Consensus 688 ~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~s~~~~~~~~~~~g~~l~~~~~-~~~p~~~~~~~ 766 (833)
+++......... .....||+.|+|||++.+..++.++|||| .|++++++++ +..|+......
T Consensus 166 ~~~~~~~~~~~~-------~~~~~~~~~y~aPE~~~~~~~~~~~Dv~s----------lG~~l~~l~t~g~~p~~~~~~~ 228 (283)
T 3gen_A 166 LSRYVLDDEYTS-------SVGSKFPVRWSPPEVLMYSKFSSKSDIWA----------FGVLMWEIYSLGKMPYERFTNS 228 (283)
T ss_dssp GGGGBCCHHHHS-------TTSTTSCGGGCCHHHHHHCCCSHHHHHHH----------HHHHHHHHHTTTCCTTTTSCHH
T ss_pred cccccccccccc-------ccCCccCcccCCHHHhccCCCCchhhHHH----------HHHHHHHHHhCCCCCccccChh
Confidence 998765433211 11234788999999999888999999999 7888888887 77776532211
Q ss_pred cccchhhhccccchhhhhhhhchHHHHHHHHHHhhccCCCCCCCCCCHHHHHHHHHHhhhh
Q 040925 767 DPSLLMEVMTNNSMIQEDKRVKTEECLNAIIRTGVLCSMESPFERMDMRDVVAKLCHTRET 827 (833)
Q Consensus 767 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~i~~~ 827 (833)
.......... ....+..+++.+.+++.+||+.||++|||++|+++.|+.+.+.
T Consensus 229 --~~~~~~~~~~------~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~ll~~L~~~~~~ 281 (283)
T 3gen_A 229 --ETAEHIAQGL------RLYRPHLASEKVYTIMYSCWHEKADERPTFKILLSNILDVMDE 281 (283)
T ss_dssp --HHHHHHHTTC------CCCCCTTCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred --HHHHHHhccc------CCCCCCcCCHHHHHHHHHHccCChhHCcCHHHHHHHHHHHhhc
Confidence 1111111100 0011122356788999999999999999999999999998764
No 92
>2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ...
Probab=100.00 E-value=1.7e-39 Score=353.50 Aligned_cols=262 Identities=26% Similarity=0.425 Sum_probs=196.1
Q ss_pred hcCCccCceeccCcceEEEEEEEC---CCceEEEEEEeeccCC-cchhHHHHHHHHHhhcCCCccceEeeEeecCCCCCC
Q 040925 530 TGEFSSSNMIGQGSFGYVYKGTLG---EDEMIVAVKVINLKYK-GASRSFVAECEALRNIRHRNLIKIITICSSTDFKGT 605 (833)
Q Consensus 530 ~~~y~~~~~lg~G~~g~Vy~~~~~---~~~~~vavK~~~~~~~-~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~ 605 (833)
.++|++.+.||+|+||.||+|++. .++..||||+++.... ...+.+.+|+.++++++||||+++++++....
T Consensus 44 ~~~~~~~~~lG~G~fg~Vy~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~---- 119 (373)
T 2qol_A 44 ATNISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGEASIMGQFDHPNIIRLEGVVTKSK---- 119 (373)
T ss_dssp GGGCCCCEEEEECSSSEEEEC-CBCTTSCBCCEEEEECCTTCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSS----
T ss_pred HhhceeeeEEeeCCCeEEEEEEEecCCCCceeEEEEEecCccCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEeeCC----
Confidence 357999999999999999999886 4677899999975432 23467999999999999999999999976544
Q ss_pred ceEeEEEEecCCCChhhhhccCCCccccccCCHHHHHHHHHHHHHHHHHHhhcCCCCceeeCCCCCCeeecCCCcEEEcc
Q 040925 606 DFKAFVFEYMENGSLKDWLHQSDDQVEVCKLSLIQRVNIAIDVASAMEYLHHHCQPPMVHGDLKPSNVLLDHDMVAHVCD 685 (833)
Q Consensus 606 ~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~gL~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kL~D 685 (833)
..++||||+++|+|.+++..... .+++.+++.++.|++.||+|||+. +|+||||||+||+++.++.+||+|
T Consensus 120 -~~~lv~e~~~~~sL~~~l~~~~~-----~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dlkp~NIll~~~~~~kl~D 190 (373)
T 2qol_A 120 -PVMIVTEYMENGSLDSFLRKHDA-----QFTVIQLVGMLRGIASGMKYLSDM---GYVHRDLAARNILINSNLVCKVSD 190 (373)
T ss_dssp -SCEEEEECCTTCBHHHHHHTTTT-----CSCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTCCEEECC
T ss_pred -ceEEEEeCCCCCcHHHHHHhCCC-----CCCHHHHHHHHHHHHHHHHHHHHC---CeeCCCCCcceEEEcCCCCEEECc
Confidence 78999999999999999986542 589999999999999999999999 999999999999999999999999
Q ss_pred cccccccCcccccccccCCCccccccccccccCccccCCCCCCcccccccCCcCCCccccCCccHHHHHH-HhCCCcccc
Q 040925 686 FGLAKFLSDHQLDTAVKTPSSSIGLKGTVGYVAPEYGMGSEASMTGDIFTGRRPIDAVFNEGHSLHEFAK-TALPEKVME 764 (833)
Q Consensus 686 fG~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~s~~~~~~~~~~~g~~l~~~~~-~~~p~~~~~ 764 (833)
||+++......... .......+|+.|+|||++.+..++.++|||| +|++++++++ +..|+....
T Consensus 191 fg~a~~~~~~~~~~-----~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~S----------lG~il~ellt~g~~P~~~~~ 255 (373)
T 2qol_A 191 FGLGRVLEDDPEAA-----YTTRGGKIPIRWTSPEAIAYRKFTSASDVWS----------YGIVLWEVMSYGERPYWEMS 255 (373)
T ss_dssp C---------------------------CTTSCHHHHHHCCCCHHHHHHH----------HHHHHHHHHTTC-CTTTTCC
T ss_pred CccccccccCCccc-----eeccCCCcCCCccChhhhccCCcCchhcHHH----------HHHHHHHHHhCCCCCCCCCC
Confidence 99998765432111 0111224678999999999899999999999 7788888776 777764221
Q ss_pred cccccchhhhccccchhhhhhhhchHHHHHHHHHHhhccCCCCCCCCCCHHHHHHHHHHhhhh
Q 040925 765 IVDPSLLMEVMTNNSMIQEDKRVKTEECLNAIIRTGVLCSMESPFERMDMRDVVAKLCHTRET 827 (833)
Q Consensus 765 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~i~~~ 827 (833)
. ... ...+.... ....+.+++..+.+++.+||+.||++|||++||++.|+.+.+.
T Consensus 256 ~--~~~-~~~i~~~~-----~~~~~~~~~~~l~~li~~cl~~dp~~RPs~~~i~~~L~~~~~~ 310 (373)
T 2qol_A 256 N--QDV-IKAVDEGY-----RLPPPMDCPAALYQLMLDCWQKDRNNRPKFEQIVSILDKLIRN 310 (373)
T ss_dssp H--HHH-HHHHHTTE-----ECCCCTTCBHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHC
T ss_pred H--HHH-HHHHHcCC-----CCCCCccccHHHHHHHHHHhCcChhhCcCHHHHHHHHHHHHhC
Confidence 1 111 11111110 0111223567789999999999999999999999999998754
No 93
>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens}
Probab=100.00 E-value=8.5e-39 Score=344.48 Aligned_cols=281 Identities=24% Similarity=0.337 Sum_probs=204.6
Q ss_pred HhcCCccCceeccCcceEEEEEEECCCceEEEEEEeeccCCcchhHHHHHHHH--HhhcCCCccceEeeEeecCCCCCCc
Q 040925 529 ATGEFSSSNMIGQGSFGYVYKGTLGEDEMIVAVKVINLKYKGASRSFVAECEA--LRNIRHRNLIKIITICSSTDFKGTD 606 (833)
Q Consensus 529 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~--l~~l~h~niv~~~~~~~~~~~~~~~ 606 (833)
..++|++.+.||+|+||.||+|++ +++.||||+++.. ....+..|.++ +..++||||+++++++......+..
T Consensus 11 ~~~~y~~~~~lg~G~~g~Vy~~~~--~~~~vavK~~~~~---~~~~~~~e~~~~~~~~~~h~~i~~~~~~~~~~~~~~~~ 85 (336)
T 3g2f_A 11 DLDNLKLLELIGRGRYGAVYKGSL--DERPVAVKVFSFA---NRQNFINEKNIYRVPLMEHDNIARFIVGDERVTADGRM 85 (336)
T ss_dssp CTTSEEEEEEEEECSSEEEEEEEE--TTEEEEEEEEEGG---GHHHHHHHHHHHTSTTCCCTTBCCEEEEEEEECTTSCE
T ss_pred ChHHhheeeecccCCCeEEEEEEE--CCeEEEEEEeecc---chhhHHHHHHHHHHHhccCcchhhheecccccccCCCc
Confidence 356899999999999999999987 6899999999643 23344445444 4558999999999876654455566
Q ss_pred eEeEEEEecCCCChhhhhccCCCccccccCCHHHHHHHHHHHHHHHHHHhhcC------CCCceeeCCCCCCeeecCCCc
Q 040925 607 FKAFVFEYMENGSLKDWLHQSDDQVEVCKLSLIQRVNIAIDVASAMEYLHHHC------QPPMVHGDLKPSNVLLDHDMV 680 (833)
Q Consensus 607 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~gL~~LH~~~------~~~ivH~Dlkp~NIll~~~~~ 680 (833)
..++||||+++|+|.+++... ..++..++.++.|++.||+|||+.. .++|+||||||+||+++.++.
T Consensus 86 ~~~lv~e~~~~g~L~~~l~~~-------~~~~~~~~~i~~qi~~~L~~LH~~~~~~~~~~~~ivH~Dikp~Nill~~~~~ 158 (336)
T 3g2f_A 86 EYLLVMEYYPNGSLXKYLSLH-------TSDWVSSCRLAHSVTRGLAYLHTELPRGDHYKPAISHRDLNSRNVLVKNDGT 158 (336)
T ss_dssp EEEEEECCCTTCBHHHHHHHC-------CBCHHHHHHHHHHHHHHHHHHHCCBCCGGGCBCCEECSSCSGGGEEECTTSC
T ss_pred eEEEEEecCCCCcHHHHHhhc-------ccchhHHHHHHHHHHHHHHHHHhhhccccccccceeecccccceEEEcCCCc
Confidence 789999999999999999765 4588999999999999999999873 338999999999999999999
Q ss_pred EEEcccccccccCcccccccccCCCccccccccccccCccccCC-------CCCCcccccccCCcCCCccccCCccHHHH
Q 040925 681 AHVCDFGLAKFLSDHQLDTAVKTPSSSIGLKGTVGYVAPEYGMG-------SEASMTGDIFTGRRPIDAVFNEGHSLHEF 753 (833)
Q Consensus 681 ~kL~DfG~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-------~~~~~~~Di~s~~~~~~~~~~~g~~l~~~ 753 (833)
+||+|||+|+.+...................||+.|+|||++.+ ..++.++|||| +|++++++
T Consensus 159 ~kL~DFG~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~Diws----------lG~il~el 228 (336)
T 3g2f_A 159 CVISDFGLSMRLTGNRLVRPGEEDNAAISEVGTIRYMAPEVLEGAVNLRDXESALKQVDMYA----------LGLIYWEI 228 (336)
T ss_dssp EEECCCTTCEECSSSSCC---------CCTTSCGGGCCHHHHTTCCCGGGHHHHHHHHHHHH----------HHHHHHHH
T ss_pred EEEeeccceeecccccccCccccccccccCCCccceeCchhhcCCcccccccccccccchHH----------HHHHHHHH
Confidence 99999999987654332211111222234579999999999887 45778999999 77788888
Q ss_pred HHHhCCCcccccccc---cchhhh------------cc--ccchhhhhhhhchHHHHHHHHHHhhccCCCCCCCCCCHHH
Q 040925 754 AKTALPEKVMEIVDP---SLLMEV------------MT--NNSMIQEDKRVKTEECLNAIIRTGVLCSMESPFERMDMRD 816 (833)
Q Consensus 754 ~~~~~p~~~~~~~~~---~~~~~~------------~~--~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~e 816 (833)
+++..|+........ ...... .. ......+........+++.+.+++.+||+.||++|||++|
T Consensus 229 l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~e 308 (336)
T 3g2f_A 229 FMRCTDLFPGESVPEYQMAFQTEVGNHPTFEDMQVLVSREKQRPKFPEAWKENSLAVRSLKETIEDCWDQDAEARLTAQX 308 (336)
T ss_dssp HTTBGGGSTTSCCCCCCCTTHHHHCSSCCHHHHHHHHTTSCCCCCCCTTCCCCSHHHHHHHHHHHHHSCSSGGGSCCHHH
T ss_pred HhcCCcCCCccchhHHHHhhhcccCCCchHHHHHhhhcccccCCCCCcccccccchHHHHHHHHHHHhcCChhhCcchHH
Confidence 877655432111110 000000 00 0000000111112346778999999999999999999999
Q ss_pred HHHHHHHhhhhhhcC
Q 040925 817 VVAKLCHTRETFLGR 831 (833)
Q Consensus 817 il~~L~~i~~~~~~~ 831 (833)
+++.|+++.+.+.+.
T Consensus 309 ~l~~L~~ll~~~~~~ 323 (336)
T 3g2f_A 309 AEERMAELMMIWERN 323 (336)
T ss_dssp HHHHHHHHHHCCCC-
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999887654
No 94
>2zv2_A Calcium/calmodulin-dependent protein kinase kinas; beta, camkk2, E.C.2.7.11.17, phosphorylation, AMPKK, metabolism, binding, calmodulin-binding; HET: 609; 2.40A {Homo sapiens}
Probab=100.00 E-value=7.3e-39 Score=338.64 Aligned_cols=253 Identities=22% Similarity=0.302 Sum_probs=196.9
Q ss_pred hcCCccCceeccCcceEEEEEEECCCceEEEEEEeeccCC--------------------------cchhHHHHHHHHHh
Q 040925 530 TGEFSSSNMIGQGSFGYVYKGTLGEDEMIVAVKVINLKYK--------------------------GASRSFVAECEALR 583 (833)
Q Consensus 530 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~--------------------------~~~~~~~~E~~~l~ 583 (833)
.++|++.+.||+|+||.||+|++..+++.||||+++.... ...+.+.+|+++++
T Consensus 12 ~~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~ 91 (298)
T 2zv2_A 12 LNQYTLKDEIGKGSYGVVKLAYNENDNTYYAMKVLSKKKLIRQAGFPRRPPPRGTRPAPGGCIQPRGPIEQVYQEIAILK 91 (298)
T ss_dssp ETTEEEEEEEEC--CCEEEEEEETTTTEEEEEEEEECC-------------------------------CHHHHHHHHHH
T ss_pred ecceEEEeEEeecCCEEEEEEEECCCCcEEEEEEeehhhhhhhcccccccccccccccccccccccchHHHHHHHHHHHH
Confidence 4689999999999999999999999999999999964321 12356899999999
Q ss_pred hcCCCccceEeeEeecCCCCCCceEeEEEEecCCCChhhhhccCCCccccccCCHHHHHHHHHHHHHHHHHHhhcCCCCc
Q 040925 584 NIRHRNLIKIITICSSTDFKGTDFKAFVFEYMENGSLKDWLHQSDDQVEVCKLSLIQRVNIAIDVASAMEYLHHHCQPPM 663 (833)
Q Consensus 584 ~l~h~niv~~~~~~~~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~gL~~LH~~~~~~i 663 (833)
+++||||+++++++.... ....++||||+++|+|.+++... .+++.+++.++.|++.||+|||+. +|
T Consensus 92 ~l~h~~iv~~~~~~~~~~---~~~~~lv~e~~~~~~l~~~~~~~-------~~~~~~~~~~~~qi~~~l~~lH~~---~i 158 (298)
T 2zv2_A 92 KLDHPNVVKLVEVLDDPN---EDHLYMVFELVNQGPVMEVPTLK-------PLSEDQARFYFQDLIKGIEYLHYQ---KI 158 (298)
T ss_dssp TCCCTTBCCEEEEEECSS---SSEEEEEEECCTTCBSCCSSCSS-------CCCHHHHHHHHHHHHHHHHHHHHT---TE
T ss_pred hCCCCCCCeEEEEEEcCC---CCEEEEEEecCCCCcHHHHhhcC-------CCCHHHHHHHHHHHHHHHHHHHHC---Ce
Confidence 999999999999986532 35789999999999999876532 689999999999999999999999 99
Q ss_pred eeeCCCCCCeeecCCCcEEEcccccccccCcccccccccCCCccccccccccccCccccCCCC---CCcccccccCCcCC
Q 040925 664 VHGDLKPSNVLLDHDMVAHVCDFGLAKFLSDHQLDTAVKTPSSSIGLKGTVGYVAPEYGMGSE---ASMTGDIFTGRRPI 740 (833)
Q Consensus 664 vH~Dlkp~NIll~~~~~~kL~DfG~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~---~~~~~Di~s~~~~~ 740 (833)
+||||||+||+++.++.+||+|||+++....... ......||+.|+|||++.+.. ++.++||||
T Consensus 159 vH~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~--------~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~s----- 225 (298)
T 2zv2_A 159 IHRDIKPSNLLVGEDGHIKIADFGVSNEFKGSDA--------LLSNTVGTPAFMAPESLSETRKIFSGKALDVWA----- 225 (298)
T ss_dssp ECCCCCGGGEEECTTSCEEECCCTTCEECSSSSC--------EECCCCSCGGGCCGGGCCTTCCCEESHHHHHHH-----
T ss_pred eccCCCHHHEEECCCCCEEEecCCCccccccccc--------cccCCcCCccccChhhhccCCCCCCCchhhhHh-----
Confidence 9999999999999999999999999986644221 112346999999999987765 478899999
Q ss_pred CccccCCccHHHHHHHhCCCcccccccccchhhhccccchhhhhhhhchHHHHHHHHHHhhccCCCCCCCCCCHHHHHHH
Q 040925 741 DAVFNEGHSLHEFAKTALPEKVMEIVDPSLLMEVMTNNSMIQEDKRVKTEECLNAIIRTGVLCSMESPFERMDMRDVVAK 820 (833)
Q Consensus 741 ~~~~~~g~~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~ 820 (833)
+|+++++++++..|+...... ........... .......+++.+.+++.+||+.||++|||++|+++.
T Consensus 226 -----lG~~l~~l~~g~~pf~~~~~~--~~~~~~~~~~~-----~~~~~~~~~~~l~~li~~~l~~dp~~R~s~~e~l~h 293 (298)
T 2zv2_A 226 -----MGVTLYCFVFGQCPFMDERIM--CLHSKIKSQAL-----EFPDQPDIAEDLKDLITRMLDKNPESRIVVPEIKLH 293 (298)
T ss_dssp -----HHHHHHHHHHSSCSSCCSSHH--HHHHHHHHCCC-----CCCSSSCCCHHHHHHHHHHTCSCTTTSCCHHHHTTC
T ss_pred -----HHHHHHHHHHCCCCCCCccHH--HHHHHHhcccC-----CCCCccccCHHHHHHHHHHhhcChhhCCCHHHHhcC
Confidence 888899999999887532211 00000000000 001112345678899999999999999999999753
No 95
>3lb7_A RAF proto-oncogene serine/threonine-protein kinas; kinase domain, alternative splicing, ATP-binding, disease MU kinase, metal-binding; 4.00A {Homo sapiens} PDB: 3omv_A*
Probab=100.00 E-value=8.8e-39 Score=338.79 Aligned_cols=265 Identities=26% Similarity=0.371 Sum_probs=203.7
Q ss_pred hcCCccCceeccCcceEEEEEEECCCceEEEEEEeeccCC--cchhHHHHHHHHHhhcCCCccceEeeEeecCCCCCCce
Q 040925 530 TGEFSSSNMIGQGSFGYVYKGTLGEDEMIVAVKVINLKYK--GASRSFVAECEALRNIRHRNLIKIITICSSTDFKGTDF 607 (833)
Q Consensus 530 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~--~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~ 607 (833)
.++|++.+.||+|+||.||+|++.. .+|+|+++.... ...+.+.+|++++++++||||+++++++... .
T Consensus 35 ~~~~~~~~~lG~G~~g~Vy~~~~~~---~~avk~~k~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~------~ 105 (307)
T 3lb7_A 35 ASEVMLSTRIGSGSFGTVYKGKWHG---DVAVKILKVVDPTPEQFQAFRNEVAVLRKTRHVNILLFMGYMTKD------N 105 (307)
T ss_dssp TTSCCEEEEEEECSSCEEEEEESSS---EEEEEECCCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSS------S
T ss_pred ccceEEEeEecCCCCeEEEEEEECC---EEEEEEEecCCCCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEccC------c
Confidence 4689999999999999999998753 489998875432 2346789999999999999999999986432 4
Q ss_pred EeEEEEecCCCChhhhhccCCCccccccCCHHHHHHHHHHHHHHHHHHhhcCCCCceeeCCCCCCeeecCCCcEEEcccc
Q 040925 608 KAFVFEYMENGSLKDWLHQSDDQVEVCKLSLIQRVNIAIDVASAMEYLHHHCQPPMVHGDLKPSNVLLDHDMVAHVCDFG 687 (833)
Q Consensus 608 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~gL~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kL~DfG 687 (833)
.++||||+++|+|.+++..... .+++.+++.++.|++.||+|||+. +|+||||||+||+++.++.+||+|||
T Consensus 106 ~~lv~e~~~~~~L~~~l~~~~~-----~~~~~~~~~i~~qi~~~L~~LH~~---~ivH~Dlkp~NIll~~~~~~kl~DFg 177 (307)
T 3lb7_A 106 LAIVTQWCEGSSLYKHLHVQET-----KFQMFQLIDIARQTAQGMDYLHAK---NIIHRDMKSNNIFLHEGLTVKIGDFG 177 (307)
T ss_dssp CEEEEECCSSCBHHHHHHTSCC-----CCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCSSSEEECTTSCEEECCCC
T ss_pred EEEEEecCCCCcHHHHHHhccc-----CCCHHHHHHHHHHHHHHHHHHHhC---CEeeCCCChhhEEEcCCCCEEEccCC
Confidence 7899999999999999975432 689999999999999999999999 99999999999999999999999999
Q ss_pred cccccCcccccccccCCCccccccccccccCccccC---CCCCCcccccccCCcCCCccccCCccHHHHHHHhCCCcccc
Q 040925 688 LAKFLSDHQLDTAVKTPSSSIGLKGTVGYVAPEYGM---GSEASMTGDIFTGRRPIDAVFNEGHSLHEFAKTALPEKVME 764 (833)
Q Consensus 688 ~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~---~~~~~~~~Di~s~~~~~~~~~~~g~~l~~~~~~~~p~~~~~ 764 (833)
+|+........ .......||+.|+|||++. +..++.++|||| +|+++++++++..|+....
T Consensus 178 ~a~~~~~~~~~------~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~s----------lG~il~elltg~~Pf~~~~ 241 (307)
T 3lb7_A 178 LATVKSRWSGS------QQVEQPTGSVLWMAPEVIRMQDNNPFSFQSDVYS----------YGIVLYELMTGELPYSHIN 241 (307)
T ss_dssp SSCC------------------CCCCTTSCCHHHHHCCSSCCCCHHHHHHH----------HHHHHHHHHHSSCTTTTCC
T ss_pred Cceeccccccc------ccccCCCCCcceECcceeeccCCCCCCchhhHHH----------HHHHHHHHHhCCCCCccCC
Confidence 99865432111 1122346999999999875 667899999999 8889999999998876322
Q ss_pred cccccchhhhccccchhhhhhhhchHHHHHHHHHHhhccCCCCCCCCCCHHHHHHHHHHhhhhhhc
Q 040925 765 IVDPSLLMEVMTNNSMIQEDKRVKTEECLNAIIRTGVLCSMESPFERMDMRDVVAKLCHTRETFLG 830 (833)
Q Consensus 765 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~i~~~~~~ 830 (833)
..+.. ........ ..+........+++.+.+++.+||+.||++|||+.|+++.++.+...+.+
T Consensus 242 ~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~l~~li~~~l~~~p~~RPs~~~il~~l~~l~~~~pk 304 (307)
T 3lb7_A 242 NRDQI--IFMVGRGY-ASPDLSKLYKNCPKAMKRLVADCVKKVKEERPLFPQILSSIELLQHSLPK 304 (307)
T ss_dssp CHHHH--HHHHHHTC-CCCCSTTSCSSSCHHHHHHHHHHSCSSSTTSCCHHHHHHHHHHHHTTCCC
T ss_pred cHHHH--HHHHhcCC-CCcchhhhhcCCcHHHHHHHHHHhhCChhhCcCHHHHHHHHHHHHhhccc
Confidence 11110 00000000 00001111234567889999999999999999999999999999887654
No 96
>1fot_A TPK1 delta, CAMP-dependent protein kinase type 1; open conformation, transferase; HET: TPO; 2.80A {Saccharomyces cerevisiae} SCOP: d.144.1.7
Probab=100.00 E-value=7.4e-39 Score=340.15 Aligned_cols=247 Identities=22% Similarity=0.257 Sum_probs=203.7
Q ss_pred hcCCccCceeccCcceEEEEEEECCCceEEEEEEeeccC---CcchhHHHHHHHHHhhcCCCccceEeeEeecCCCCCCc
Q 040925 530 TGEFSSSNMIGQGSFGYVYKGTLGEDEMIVAVKVINLKY---KGASRSFVAECEALRNIRHRNLIKIITICSSTDFKGTD 606 (833)
Q Consensus 530 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~ 606 (833)
.++|++.+.||+|+||.||+|++..+++.||+|+++... ....+.+.+|+.+++.++||||+++++++.+..
T Consensus 5 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~Iv~~~~~~~~~~----- 79 (318)
T 1fot_A 5 LQDFQILRTLGTGSFGRVHLIRSRHNGRYYAMKVLKKEIVVRLKQVEHTNDERLMLSIVTHPFIIRMWGTFQDAQ----- 79 (318)
T ss_dssp GGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCBTTBCCEEEEEECSS-----
T ss_pred hHHcEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHhhCCCCCCceEeEEEEeCC-----
Confidence 467999999999999999999999999999999997432 234567889999999999999999999976554
Q ss_pred eEeEEEEecCCCChhhhhccCCCccccccCCHHHHHHHHHHHHHHHHHHhhcCCCCceeeCCCCCCeeecCCCcEEEccc
Q 040925 607 FKAFVFEYMENGSLKDWLHQSDDQVEVCKLSLIQRVNIAIDVASAMEYLHHHCQPPMVHGDLKPSNVLLDHDMVAHVCDF 686 (833)
Q Consensus 607 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~gL~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kL~Df 686 (833)
..++||||+++|+|.+++.... .+++..++.++.|++.||+|||+. +|+||||||+||+++.++.+||+||
T Consensus 80 ~~~lv~e~~~gg~L~~~l~~~~------~~~~~~~~~~~~qi~~aL~~LH~~---~ivHrDlkp~NIll~~~g~~kL~Df 150 (318)
T 1fot_A 80 QIFMIMDYIEGGELFSLLRKSQ------RFPNPVAKFYAAEVCLALEYLHSK---DIIYRDLKPENILLDKNGHIKITDF 150 (318)
T ss_dssp EEEEEECCCCSCBHHHHHHHTS------SCCHHHHHHHHHHHHHHHHHHHTT---TEECCCCCGGGEEECTTSCEEECCC
T ss_pred EEEEEEeCCCCCCHHHHHHHcC------CCCHHHHHHHHHHHHHHHHHHHHC---CccccCCChheEEEcCCCCEEEeec
Confidence 8999999999999999998754 689999999999999999999999 9999999999999999999999999
Q ss_pred ccccccCcccccccccCCCccccccccccccCccccCCCCCCcccccccCCcCCCccccCCccHHHHHHHhCCCcccccc
Q 040925 687 GLAKFLSDHQLDTAVKTPSSSIGLKGTVGYVAPEYGMGSEASMTGDIFTGRRPIDAVFNEGHSLHEFAKTALPEKVMEIV 766 (833)
Q Consensus 687 G~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~s~~~~~~~~~~~g~~l~~~~~~~~p~~~~~~~ 766 (833)
|+++..... ....+||+.|+|||++.+..++.++|||| .|+++++++++..|+......
T Consensus 151 g~a~~~~~~-----------~~~~~gt~~y~aPE~~~~~~~~~~~Diws----------lG~il~ell~g~~pf~~~~~~ 209 (318)
T 1fot_A 151 GFAKYVPDV-----------TYTLCGTPDYIAPEVVSTKPYNKSIDWWS----------FGILIYEMLAGYTPFYDSNTM 209 (318)
T ss_dssp SSCEECSSC-----------BCCCCSCTTTCCHHHHTTCCBCTTHHHHH----------HHHHHHHHHHSSCTTCCSSHH
T ss_pred CcceecCCc-----------cccccCCccccCHhHhcCCCCCcccchhh----------hHHHHHHHHhCCCCCCCCCHH
Confidence 999865432 12356999999999999999999999999 888999999999887532211
Q ss_pred cccchhhhccccchhhhhhhhchHHHHHHHHHHhhccCCCCCCCCC-----CHHHHHHH
Q 040925 767 DPSLLMEVMTNNSMIQEDKRVKTEECLNAIIRTGVLCSMESPFERM-----DMRDVVAK 820 (833)
Q Consensus 767 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RP-----t~~eil~~ 820 (833)
........... ..+..++..+.+++.+||..||++|| +++|+++.
T Consensus 210 --~~~~~i~~~~~-------~~p~~~~~~~~~li~~lL~~dp~~R~~~~~~~~~~i~~h 259 (318)
T 1fot_A 210 --KTYEKILNAEL-------RFPPFFNEDVKDLLSRLITRDLSQRLGNLQNGTEDVKNH 259 (318)
T ss_dssp --HHHHHHHHCCC-------CCCTTSCHHHHHHHHHHTCSCTTTCTTSSTTTTHHHHTS
T ss_pred --HHHHHHHhCCC-------CCCCCCCHHHHHHHHHHhccCHHHcCCCcCCCHHHHhcC
Confidence 11111111111 01123456788999999999999999 88888754
No 97
>4aw2_A Serine/threonine-protein kinase MRCK alpha; transferase, CDC42BPA; HET: 22E; 1.70A {Rattus norvegicus} PDB: 3tku_A* 3qfv_A*
Probab=100.00 E-value=1.8e-39 Score=358.20 Aligned_cols=265 Identities=19% Similarity=0.229 Sum_probs=208.0
Q ss_pred chHHHHHHhcCCccCceeccCcceEEEEEEECCCceEEEEEEeecc---CCcchhHHHHHHHHHhhcCCCccceEeeEee
Q 040925 522 SYAELSKATGEFSSSNMIGQGSFGYVYKGTLGEDEMIVAVKVINLK---YKGASRSFVAECEALRNIRHRNLIKIITICS 598 (833)
Q Consensus 522 ~~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~---~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~ 598 (833)
...++....++|++.+.||+|+||+||+|++..+++.||+|+++.. .......+.+|..++..++||||+++++++.
T Consensus 65 ~~~~~~~~~~~y~~~~~LG~G~fG~V~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~~~hp~Iv~l~~~~~ 144 (437)
T 4aw2_A 65 KVKQMRLHREDFEILKVIGRGAFGEVAVVKLKNADKVFAMKILNKWEMLKRAETACFREERDVLVNGDSKWITTLHYAFQ 144 (437)
T ss_dssp HHHHHSCCGGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEHHHHHHTTTTCCHHHHHHHHHHSCTTTBCCEEEEEE
T ss_pred hhhcccCChhheEEEEEEEeCCCEEEEEEEEcCCCcEEEEEEEEHHHhhhHHHHHHHHHHHHHHHhCCCCCEEEEEEEEe
Confidence 3445556678999999999999999999999999999999999642 1223345899999999999999999999976
Q ss_pred cCCCCCCceEeEEEEecCCCChhhhhccCCCccccccCCHHHHHHHHHHHHHHHHHHhhcCCCCceeeCCCCCCeeecCC
Q 040925 599 STDFKGTDFKAFVFEYMENGSLKDWLHQSDDQVEVCKLSLIQRVNIAIDVASAMEYLHHHCQPPMVHGDLKPSNVLLDHD 678 (833)
Q Consensus 599 ~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~gL~~LH~~~~~~ivH~Dlkp~NIll~~~ 678 (833)
+.+ ..|+||||+++|+|.+++..... .+++..++.++.|++.||+|||+. +||||||||+|||++.+
T Consensus 145 ~~~-----~~~lV~Ey~~gg~L~~~l~~~~~-----~l~e~~~~~~~~qi~~aL~~LH~~---giiHrDLKp~NILl~~~ 211 (437)
T 4aw2_A 145 DDN-----NLYLVMDYYVGGDLLTLLSKFED-----RLPEEMARFYLAEMVIAIDSVHQL---HYVHRDIKPDNILMDMN 211 (437)
T ss_dssp CSS-----EEEEEECCCTTCBHHHHHHTTTT-----CCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTT
T ss_pred eCC-----EEEEEEecCCCCcHHHHHHHccC-----CCCHHHHHHHHHHHHHHHHHHHhC---CeEecccCHHHeeEcCC
Confidence 655 89999999999999999986432 689999999999999999999999 99999999999999999
Q ss_pred CcEEEcccccccccCcccccccccCCCccccccccccccCccccC-----CCCCCcccccccCCcCCCccccCCccHHHH
Q 040925 679 MVAHVCDFGLAKFLSDHQLDTAVKTPSSSIGLKGTVGYVAPEYGM-----GSEASMTGDIFTGRRPIDAVFNEGHSLHEF 753 (833)
Q Consensus 679 ~~~kL~DfG~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~-----~~~~~~~~Di~s~~~~~~~~~~~g~~l~~~ 753 (833)
+.+||+|||+|+........ .....+||+.|+|||++. +..++.++|||| .|++++++
T Consensus 212 g~vkL~DFGla~~~~~~~~~-------~~~~~~GT~~Y~APE~l~~~~~~~~~~~~~~DvwS----------lGvil~el 274 (437)
T 4aw2_A 212 GHIRLADFGSCLKLMEDGTV-------QSSVAVGTPDYISPEILQAMEGGKGRYGPECDWWS----------LGVCMYEM 274 (437)
T ss_dssp SCEEECCCTTCEECCTTSCE-------ECCSCCSCGGGCCHHHHHHHHTSCCEECTHHHHHH----------HHHHHHHH
T ss_pred CCEEEcchhhhhhcccCCCc-------ccccccCCcCeeChHHHhhcccCCCCCCCcCeeHH----------HHHHHHHH
Confidence 99999999999765443211 112357999999999986 567899999999 88999999
Q ss_pred HHHhCCCcccccccccchhhhccccchhhhhhhhchHHHHHHHHHHhhccCCCCCCC--CCCHHHHHHH
Q 040925 754 AKTALPEKVMEIVDPSLLMEVMTNNSMIQEDKRVKTEECLNAIIRTGVLCSMESPFE--RMDMRDVVAK 820 (833)
Q Consensus 754 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~--RPt~~eil~~ 820 (833)
+++..|+......+ ............. .......+++.+.+++.+|+..+|++ ||+++|+++.
T Consensus 275 ltG~~Pf~~~~~~~--~~~~i~~~~~~~~--~p~~~~~~s~~~~dLi~~lL~~~~~r~~r~~~~eil~H 339 (437)
T 4aw2_A 275 LYGETPFYAESLVE--TYGKIMNHKERFQ--FPTQVTDVSENAKDLIRRLICSREHRLGQNGIEDFKKH 339 (437)
T ss_dssp HHSSCTTCCSSHHH--HHHHHHTHHHHCC--CCSSCCCSCHHHHHHHHTTSSCGGGCTTTTTTHHHHTS
T ss_pred HhCCCCCCCCChhH--HHHhhhhcccccc--CCcccccCCHHHHHHHHHHhcccccccCCCCHHHHhCC
Confidence 99999976322111 1111110000000 00001124567889999999998888 9999999864
No 98
>3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin dependent protein kinase, Mg synaptic plasticity, pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB: 3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A
Probab=100.00 E-value=5.1e-39 Score=347.31 Aligned_cols=257 Identities=20% Similarity=0.257 Sum_probs=203.6
Q ss_pred hcCCccCceeccCcceEEEEEEECCCceEEEEEEeeccC-----CcchhHHHHHHHHHhhcCCCccceEeeEeecCCCCC
Q 040925 530 TGEFSSSNMIGQGSFGYVYKGTLGEDEMIVAVKVINLKY-----KGASRSFVAECEALRNIRHRNLIKIITICSSTDFKG 604 (833)
Q Consensus 530 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~-----~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~ 604 (833)
.++|++.+.||+|+||.||+|++..+++.||||+++... ....+.+.+|+++++.++||||+++++++...+
T Consensus 23 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~--- 99 (351)
T 3c0i_A 23 EDVYELCEVIGKGPFSVVRRCINRETGQQFAVKIVDVAKFTSSPGLSTEDLKREASICHMLKHPHIVELLETYSSDG--- 99 (351)
T ss_dssp HHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHTSSSCCHHHHHHHHHHHHHCCCTTBCCEEEEEEETT---
T ss_pred ccceEEeeEEeeCCCEEEEEEEECCCCCEEEEEEEEhhhccccccchHHHHHHHHHHHHhCCCCCCCcEEEEEEeCC---
Confidence 357999999999999999999999999999999986321 123567999999999999999999999976654
Q ss_pred CceEeEEEEecCCCChhhhhccCCCccccccCCHHHHHHHHHHHHHHHHHHhhcCCCCceeeCCCCCCeeecCCCc---E
Q 040925 605 TDFKAFVFEYMENGSLKDWLHQSDDQVEVCKLSLIQRVNIAIDVASAMEYLHHHCQPPMVHGDLKPSNVLLDHDMV---A 681 (833)
Q Consensus 605 ~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~gL~~LH~~~~~~ivH~Dlkp~NIll~~~~~---~ 681 (833)
..++||||+++|+|.+++...... ...+++..++.++.|++.||+|||+. +|+||||||+||+++.++. +
T Consensus 100 --~~~lv~e~~~g~~L~~~l~~~~~~--~~~~~~~~~~~i~~qi~~al~~lH~~---~ivHrDlkp~NIl~~~~~~~~~v 172 (351)
T 3c0i_A 100 --MLYMVFEFMDGADLCFEIVKRADA--GFVYSEAVASHYMRQILEALRYCHDN---NIIHRDVKPHCVLLASKENSAPV 172 (351)
T ss_dssp --EEEEEEECCSSCBHHHHHHHHHHT--TCCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECSSSTTCCE
T ss_pred --EEEEEEeCCCCCCHHHHHHHhccc--CCCCCHHHHHHHHHHHHHHHHHHHHC---CceeccCChHHeEEecCCCCCcE
Confidence 899999999999999888653211 11589999999999999999999999 9999999999999986654 9
Q ss_pred EEcccccccccCcccccccccCCCccccccccccccCccccCCCCCCcccccccCCcCCCccccCCccHHHHHHHhCCCc
Q 040925 682 HVCDFGLAKFLSDHQLDTAVKTPSSSIGLKGTVGYVAPEYGMGSEASMTGDIFTGRRPIDAVFNEGHSLHEFAKTALPEK 761 (833)
Q Consensus 682 kL~DfG~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~s~~~~~~~~~~~g~~l~~~~~~~~p~~ 761 (833)
||+|||+++....... ......||+.|+|||++.+..++.++|||| .|+++|+++++..|+.
T Consensus 173 kl~Dfg~a~~~~~~~~--------~~~~~~gt~~y~aPE~~~~~~~~~~~Diws----------lG~il~~ll~g~~pf~ 234 (351)
T 3c0i_A 173 KLGGFGVAIQLGESGL--------VAGGRVGTPHFMAPEVVKREPYGKPVDVWG----------CGVILFILLSGCLPFY 234 (351)
T ss_dssp EECCCTTCEECCTTSC--------BCCCCCSCGGGCCHHHHTTCCBCTHHHHHH----------HHHHHHHHHHSSCSSC
T ss_pred EEecCcceeEecCCCe--------eecCCcCCcCccCHHHHcCCCCCchHhhHH----------HHHHHHHHHHCCCCCC
Confidence 9999999987654321 112356999999999999999999999999 8889999999998875
Q ss_pred ccccccccchhhhccccchhhhhhhhchHHHHHHHHHHhhccCCCCCCCCCCHHHHHHH
Q 040925 762 VMEIVDPSLLMEVMTNNSMIQEDKRVKTEECLNAIIRTGVLCSMESPFERMDMRDVVAK 820 (833)
Q Consensus 762 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~ 820 (833)
... ............... ......+++.+.+++.+||..||++|||+.|+++.
T Consensus 235 ~~~---~~~~~~i~~~~~~~~---~~~~~~~s~~~~~li~~~L~~dP~~R~s~~e~l~h 287 (351)
T 3c0i_A 235 GTK---ERLFEGIIKGKYKMN---PRQWSHISESAKDLVRRMLMLDPAERITVYEALNH 287 (351)
T ss_dssp SSH---HHHHHHHHHTCCCCC---HHHHTTSCHHHHHHHHHHTCSSTTTSCCHHHHHTS
T ss_pred CcH---HHHHHHHHcCCCCCC---ccccccCCHHHHHHHHHHCCCChhHCcCHHHHhcC
Confidence 321 111111111111110 01112345678999999999999999999999864
No 99
>1xjd_A Protein kinase C, theta type; PKC-theta, ATP, AMP,, transferase; HET: TPO SEP STU; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jed_A*
Probab=100.00 E-value=2.6e-39 Score=346.99 Aligned_cols=252 Identities=23% Similarity=0.310 Sum_probs=202.8
Q ss_pred HHHhcCCccCceeccCcceEEEEEEECCCceEEEEEEeeccC---CcchhHHHHHHHHHhhc-CCCccceEeeEeecCCC
Q 040925 527 SKATGEFSSSNMIGQGSFGYVYKGTLGEDEMIVAVKVINLKY---KGASRSFVAECEALRNI-RHRNLIKIITICSSTDF 602 (833)
Q Consensus 527 ~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l-~h~niv~~~~~~~~~~~ 602 (833)
....++|++.+.||+|+||.||+|+++.+++.||+|+++... ....+.+..|.++++.+ +||||+++++++.+.+
T Consensus 13 ~~~~~~y~~~~~lG~G~fg~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~il~~~~~hp~iv~l~~~~~~~~- 91 (345)
T 1xjd_A 13 KLKIEDFILHKMLGKGSFGKVFLAEFKKTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEHPFLTHMFCTFQTKE- 91 (345)
T ss_dssp ---CTTEEEEEEEEECSSSEEEEEEETTTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHTTCTTBCCEEEEEECSS-
T ss_pred CCChHHeEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhHHhhhhhhHHHHHHHHHHHHhcCCCCCCCcEEEEEEeCC-
Confidence 345678999999999999999999999999999999997532 23456788899999987 8999999999976654
Q ss_pred CCCceEeEEEEecCCCChhhhhccCCCccccccCCHHHHHHHHHHHHHHHHHHhhcCCCCceeeCCCCCCeeecCCCcEE
Q 040925 603 KGTDFKAFVFEYMENGSLKDWLHQSDDQVEVCKLSLIQRVNIAIDVASAMEYLHHHCQPPMVHGDLKPSNVLLDHDMVAH 682 (833)
Q Consensus 603 ~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~gL~~LH~~~~~~ivH~Dlkp~NIll~~~~~~k 682 (833)
..|+||||+++|+|.+++.... .+++.+++.++.|++.||+|||+. ||+||||||+||+++.++.+|
T Consensus 92 ----~~~lv~E~~~gg~L~~~l~~~~------~~~~~~~~~~~~qi~~aL~~LH~~---~ivHrDlkp~NIll~~~g~vk 158 (345)
T 1xjd_A 92 ----NLFFVMEYLNGGDLMYHIQSCH------KFDLSRATFYAAEIILGLQFLHSK---GIVYRDLKLDNILLDKDGHIK 158 (345)
T ss_dssp ----EEEEEEECCTTCBHHHHHHHHS------SCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCCGGGEEECTTSCEE
T ss_pred ----EEEEEEeCCCCCcHHHHHHHcC------CCCHHHHHHHHHHHHHHHHHHHHC---CeEeCCCChhhEEECCCCCEE
Confidence 8999999999999999998644 689999999999999999999999 999999999999999999999
Q ss_pred EcccccccccCcccccccccCCCccccccccccccCccccCCCCCCcccccccCCcCCCccccCCccHHHHHHHhCCCcc
Q 040925 683 VCDFGLAKFLSDHQLDTAVKTPSSSIGLKGTVGYVAPEYGMGSEASMTGDIFTGRRPIDAVFNEGHSLHEFAKTALPEKV 762 (833)
Q Consensus 683 L~DfG~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~s~~~~~~~~~~~g~~l~~~~~~~~p~~~ 762 (833)
|+|||+|+...... ......+||+.|+|||++.+..++.++|||| .|+++|+++++..|+..
T Consensus 159 L~DFG~a~~~~~~~--------~~~~~~~gt~~y~aPE~~~~~~~~~~~Diws----------lG~il~ell~g~~Pf~~ 220 (345)
T 1xjd_A 159 IADFGMCKENMLGD--------AKTNTFCGTPDYIAPEILLGQKYNHSVDWWS----------FGVLLYEMLIGQSPFHG 220 (345)
T ss_dssp ECCCTTCBCCCCTT--------CCBCCCCSCGGGCCHHHHTTCCBCTHHHHHH----------HHHHHHHHHHSSCSSCC
T ss_pred EeEChhhhhcccCC--------CcccCCCCCcccCChhhhcCCCCCChhhhHH----------HHHHHHHHhcCCCCCCC
Confidence 99999998543211 1123467999999999999999999999999 88899999999988753
Q ss_pred cccccccchhhhccccchhhhhhhhchHHHHHHHHHHhhccCCCCCCCCCCHH-HHHH
Q 040925 763 MEIVDPSLLMEVMTNNSMIQEDKRVKTEECLNAIIRTGVLCSMESPFERMDMR-DVVA 819 (833)
Q Consensus 763 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~-eil~ 819 (833)
... ............ ..+..+++.+.+++.+||..||++||++. |+++
T Consensus 221 ~~~--~~~~~~i~~~~~-------~~p~~~s~~~~~li~~lL~~dp~~R~~~~~~i~~ 269 (345)
T 1xjd_A 221 QDE--EELFHSIRMDNP-------FYPRWLEKEAKDLLVKLFVREPEKRLGVRGDIRQ 269 (345)
T ss_dssp SSH--HHHHHHHHHCCC-------CCCTTSCHHHHHHHHHHSCSSGGGSBTTBSCGGG
T ss_pred CCH--HHHHHHHHhCCC-------CCCcccCHHHHHHHHHHhcCCHhHcCCChHHHHc
Confidence 221 111111111110 11122456788999999999999999997 6643
No 100
>3gxj_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3hmm_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A*
Probab=100.00 E-value=1e-39 Score=346.27 Aligned_cols=279 Identities=22% Similarity=0.259 Sum_probs=187.5
Q ss_pred hcCCccCceeccCcceEEEEEEECCCceEEEEEEeeccCCcchhHHHHHHHHHhh--cCCCccceEeeEeecCCCCCCce
Q 040925 530 TGEFSSSNMIGQGSFGYVYKGTLGEDEMIVAVKVINLKYKGASRSFVAECEALRN--IRHRNLIKIITICSSTDFKGTDF 607 (833)
Q Consensus 530 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~--l~h~niv~~~~~~~~~~~~~~~~ 607 (833)
.++|++.+.||+|+||.||+|++ +++.||||+++. .....+.+|.+++.. ++||||+++++++.... .....
T Consensus 2 ~~~y~~~~~lg~G~~g~V~~~~~--~~~~vavK~~~~---~~~~~~~~e~~~~~~~~~~h~~i~~~~~~~~~~~-~~~~~ 75 (303)
T 3gxj_A 2 ARTIVLQESIGKGRFGEVWRGKW--RGEEVAVKIFSS---REERSWFREAEIYQTVMLRHENILGFIAADNKDN-GTWTQ 75 (303)
T ss_dssp GGGCCCCEEEEECSSSEEEEC-C--TTSCEEEEECC----TTHHHHHHHHHHHTSTTCCC-CBCCEEEEEEEEC-SSSEE
T ss_pred cceeeehhhccCCCCeEEEEEEE--cCcceEEEEecc---cchhhHHHHHHHHHHHhccCcceeeeeeecccCC-Cccce
Confidence 35799999999999999999987 478899999863 234567788888888 68999999999976543 22236
Q ss_pred EeEEEEecCCCChhhhhccCCCccccccCCHHHHHHHHHHHHHHHHHHh--------hcCCCCceeeCCCCCCeeecCCC
Q 040925 608 KAFVFEYMENGSLKDWLHQSDDQVEVCKLSLIQRVNIAIDVASAMEYLH--------HHCQPPMVHGDLKPSNVLLDHDM 679 (833)
Q Consensus 608 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~gL~~LH--------~~~~~~ivH~Dlkp~NIll~~~~ 679 (833)
.++||||+++|+|.+++... .+++..++.++.|++.||+||| +. +|+||||||+||+++.++
T Consensus 76 ~~lv~e~~~~g~L~~~l~~~-------~~~~~~~~~~~~~i~~~l~~lH~~~~~~~~~~---~ivH~Dlkp~Nil~~~~~ 145 (303)
T 3gxj_A 76 LWLVSDYHEHGSLFDYLNRY-------TVTVEGMIKLALSTASGLAHLHMEIVGTQGKP---AIAHRDLKSKNILVKKNG 145 (303)
T ss_dssp EEEEEECCTTCCHHHHHHHC-------CBCC-CHHHHC-CHHHHHC-CCCCBCSTTCBC----CCCSCCCGGGC-CCTTC
T ss_pred eEEEEeccCCCCHHHHHhcc-------CcchHHHHHHHHHHHHHHHHHHHHHhhhccCC---CEeeCcCCHHHeEECCCC
Confidence 89999999999999999654 5788899999999999999999 77 999999999999999999
Q ss_pred cEEEcccccccccCcccccccccCCCccccccccccccCccccCCC------CCCcccccccCCcCCCccccCCccHHHH
Q 040925 680 VAHVCDFGLAKFLSDHQLDTAVKTPSSSIGLKGTVGYVAPEYGMGS------EASMTGDIFTGRRPIDAVFNEGHSLHEF 753 (833)
Q Consensus 680 ~~kL~DfG~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~------~~~~~~Di~s~~~~~~~~~~~g~~l~~~ 753 (833)
.+||+|||+|+......... ........||+.|+|||++.+. .++.++||||.|+.+++++.........
T Consensus 146 ~~kl~DFg~a~~~~~~~~~~----~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~DiwslG~il~el~~g~~~~~~~ 221 (303)
T 3gxj_A 146 TCCIADLGLAVRHDSATDTI----DIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIH 221 (303)
T ss_dssp CC-BCCCCC-CCEETTTTEE----SCC-----CCGGGCCHHHHTTCSCTTCHHHHHHHHHHC-CCCC-CTGGGBCBTTBC
T ss_pred CEEEeecCcceeccCCCccc----ccccCCCCcCccccCHhhhcCcccccccccCcchhHHHHHHHHHHHHhcCCCcccc
Confidence 99999999997654432211 1112234699999999998776 4557899999555554443321000000
Q ss_pred HHHhCCCccccccc---ccchhhhccccchhhhhhhhchHHHHHHHHHHhhccCCCCCCCCCCHHHHHHHHHHhhhhh
Q 040925 754 AKTALPEKVMEIVD---PSLLMEVMTNNSMIQEDKRVKTEECLNAIIRTGVLCSMESPFERMDMRDVVAKLCHTRETF 828 (833)
Q Consensus 754 ~~~~~p~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~i~~~~ 828 (833)
.....|+......+ ..................+....++++.+.+++.+||+.||++|||++|+++.|+.+.+..
T Consensus 222 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~~i~~~L~~l~~~~ 299 (303)
T 3gxj_A 222 EDYQLPYYDLVPSDPSVEEMRKVVCEQKLRPNIPNRWQSCEALRVMAKIMRECWYANGAARLTALRIKKTLSQLSQQE 299 (303)
T ss_dssp -CCCCTTTTTCC-CCCCC-CHHHHTTSCCCCCCCGGGGSSHHHHHHHHHHHTTCCSSGGGSCCHHHHHHHHHC-CCC-
T ss_pred ceeeccccccCCCCccHHHHHHHHHHhhcCCCccccccchhhHHHHHHHHHHHhccCcccCCCHHHHHHHHHHhhhhc
Confidence 00033332111000 1111111111111222223334467889999999999999999999999999999987643
No 101
>3op5_A Serine/threonine-protein kinase VRK1; adenosine triphosphate, amino acid sequence, binding sites, domain, models, molecular; HET: REB; 2.40A {Homo sapiens} PDB: 2lav_A 2kty_A 2kul_A
Probab=100.00 E-value=6.9e-39 Score=348.69 Aligned_cols=275 Identities=18% Similarity=0.251 Sum_probs=208.1
Q ss_pred HhcCCccCceeccCcceEEEEEEECCC-----ceEEEEEEeeccCCcc-----------hhHHHHHHHHHhhcCCCccce
Q 040925 529 ATGEFSSSNMIGQGSFGYVYKGTLGED-----EMIVAVKVINLKYKGA-----------SRSFVAECEALRNIRHRNLIK 592 (833)
Q Consensus 529 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~-----~~~vavK~~~~~~~~~-----------~~~~~~E~~~l~~l~h~niv~ 592 (833)
..++|++.+.||+|+||.||+|.+..+ ++.||||++....... ......|+..++.++||||++
T Consensus 33 ~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~~~~l~h~~iv~ 112 (364)
T 3op5_A 33 AAAAWKVGLPIGQGGFGCIYLADMNSSESVGSDAPCVVKVEPSDNGPLFTELKFYQRAAKPEQIQKWIRTRKLKYLGVPK 112 (364)
T ss_dssp TCCEEEEEEECCCC-CCEEEEEEECCSSCCCTTCSEEEEEEETTCHHHHHHHHHHHHHCCHHHHHHHHHHTTCSCCCSCC
T ss_pred CCCeEEEEEEEecCCCeEEEEeeecCccccccccceEEEEeeccchhHHHHHHHHHhhhhhHHHHHHHHHhhccCCCCCe
Confidence 345899999999999999999999754 5789999986443111 123445666777788999999
Q ss_pred EeeEeecCCCCCCceEeEEEEecCCCChhhhhccCCCccccccCCHHHHHHHHHHHHHHHHHHhhcCCCCceeeCCCCCC
Q 040925 593 IITICSSTDFKGTDFKAFVFEYMENGSLKDWLHQSDDQVEVCKLSLIQRVNIAIDVASAMEYLHHHCQPPMVHGDLKPSN 672 (833)
Q Consensus 593 ~~~~~~~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~gL~~LH~~~~~~ivH~Dlkp~N 672 (833)
+++++.... .+..+.++||||+ +|+|.+++..... .+++.+++.|+.|++.||+|||+. +|+||||||+|
T Consensus 113 ~~~~~~~~~-~~~~~~~lv~e~~-g~~L~~~~~~~~~-----~l~~~~~~~i~~qi~~~l~~lH~~---~iiHrDlkp~N 182 (364)
T 3op5_A 113 YWGSGLHDK-NGKSYRFMIMDRF-GSDLQKIYEANAK-----RFSRKTVLQLSLRILDILEYIHEH---EYVHGDIKASN 182 (364)
T ss_dssp EEEEEEEEE-TTEEEEEEEEECE-EEEHHHHHHHTTS-----CCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGG
T ss_pred EEeeeeecc-CCcceEEEEEeCC-CCCHHHHHHhccC-----CCCHHHHHHHHHHHHHHHHHHHHC---CeEEecCCHHH
Confidence 999987642 2335689999999 8999999987532 699999999999999999999999 99999999999
Q ss_pred eeec--CCCcEEEcccccccccCcccccccccCCCccccccccccccCccccCCCCCCcccccccCCcCCCccccCCccH
Q 040925 673 VLLD--HDMVAHVCDFGLAKFLSDHQLDTAVKTPSSSIGLKGTVGYVAPEYGMGSEASMTGDIFTGRRPIDAVFNEGHSL 750 (833)
Q Consensus 673 Ill~--~~~~~kL~DfG~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~s~~~~~~~~~~~g~~l 750 (833)
|+++ .++.+||+|||+|+.+......... .........||+.|+|||++.+..++.++|||| +|+++
T Consensus 183 ill~~~~~~~~kl~DFG~a~~~~~~~~~~~~-~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~s----------lG~~l 251 (364)
T 3op5_A 183 LLLNYKNPDQVYLVDYGLAYRYCPEGVHKAY-AADPKRCHDGTIEFTSIDAHNGVAPSRRGDLEI----------LGYCM 251 (364)
T ss_dssp EEEESSCTTCEEECCCTTCEESSGGGCCCCS-SCCSSCCCCCCTTTCCHHHHTTCCCCHHHHHHH----------HHHHH
T ss_pred EEEecCCCCeEEEEECCcceecccCCccccc-ccCcccccCCCCCccCHHHhCCCCCCchhhHHH----------HHHHH
Confidence 9999 8899999999999877654322111 111223456999999999999999999999999 88999
Q ss_pred HHHHHHhCCCcccccccccchhhhccccchhhhhhhhch------HHHHHHHHHHhhccCCCCCCCCCCHHHHHHHHHHh
Q 040925 751 HEFAKTALPEKVMEIVDPSLLMEVMTNNSMIQEDKRVKT------EECLNAIIRTGVLCSMESPFERMDMRDVVAKLCHT 824 (833)
Q Consensus 751 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~i 824 (833)
++++++..|+.... .++......... . ........ ..+++.+.+++..||..||++||++++|++.|+.+
T Consensus 252 ~el~~g~~Pf~~~~-~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~RP~~~~l~~~l~~~ 327 (364)
T 3op5_A 252 IQWLTGHLPWEDNL-KDPKYVRDSKIR-Y--RENIASLMDKCFPAANAPGEIAKYMETVKLLDYTEKPLYENLRDILLQG 327 (364)
T ss_dssp HHHHHSCCTTGGGT-TCHHHHHHHHHH-H--HHCHHHHHHHHSCTTCCCHHHHHHHHHHHTCCTTCCCCHHHHHHHHHHH
T ss_pred HHHHhCCCCccccc-cCHHHHHHHHHH-h--hhhHHHHHHHhcccccCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHH
Confidence 99999999976211 111111100000 0 00000001 23367889999999999999999999999999998
Q ss_pred hhhh
Q 040925 825 RETF 828 (833)
Q Consensus 825 ~~~~ 828 (833)
.+..
T Consensus 328 ~~~~ 331 (364)
T 3op5_A 328 LKAI 331 (364)
T ss_dssp HHHT
T ss_pred HHHc
Confidence 8653
No 102
>3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor, receptor tyrosine kinase, spirocyc kinase domain, phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus musculus}
Probab=100.00 E-value=4.3e-39 Score=344.68 Aligned_cols=273 Identities=22% Similarity=0.354 Sum_probs=195.5
Q ss_pred HHhcCCccCceeccCcceEEEEEEECCCce---EEEEEEeecc--CCcchhHHHHHHHHHhhcCCCccceEeeEeecCCC
Q 040925 528 KATGEFSSSNMIGQGSFGYVYKGTLGEDEM---IVAVKVINLK--YKGASRSFVAECEALRNIRHRNLIKIITICSSTDF 602 (833)
Q Consensus 528 ~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~---~vavK~~~~~--~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~ 602 (833)
...++|++.+.||+|+||.||+|++..++. .||||+++.. .....+.+.+|++++++++||||+++++++.....
T Consensus 20 i~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~ 99 (323)
T 3qup_A 20 IPEQQFTLGRMLGKGEFGSVREAQLKQEDGSFVKVAVKMLKADIIASSDIEEFLREAACMKEFDHPHVAKLVGVSLRSRA 99 (323)
T ss_dssp CC---CEEEEEEEEETTEEEEEEEC-------CEEEEEEC------CHHHHHHHHHHHHHTTCCCTTBCCCCEEEECC--
T ss_pred cChhHeEEeceecccCCeEEEEEEEcccCCcceeEEEEEecccccCHHHHHHHHHHHHHHHHCCCCceehhhceeecccc
Confidence 345689999999999999999999876664 8999999754 23345789999999999999999999999876542
Q ss_pred CC-CceEeEEEEecCCCChhhhhccCCCccccccCCHHHHHHHHHHHHHHHHHHhhcCCCCceeeCCCCCCeeecCCCcE
Q 040925 603 KG-TDFKAFVFEYMENGSLKDWLHQSDDQVEVCKLSLIQRVNIAIDVASAMEYLHHHCQPPMVHGDLKPSNVLLDHDMVA 681 (833)
Q Consensus 603 ~~-~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~gL~~LH~~~~~~ivH~Dlkp~NIll~~~~~~ 681 (833)
.+ ....++||||+++|+|.+++...........+++.+++.++.|++.||+|||+. ||+||||||+||+++.++.+
T Consensus 100 ~~~~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~al~~LH~~---~ivH~Dikp~NIli~~~~~~ 176 (323)
T 3qup_A 100 KGRLPIPMVILPFMKHGDLHAFLLASRIGENPFNLPLQTLVRFMVDIACGMEYLSSR---NFIHRDLAARNCMLAEDMTV 176 (323)
T ss_dssp -----CEEEEEECCTTCBHHHHHHHHHC---CCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECTTSCE
T ss_pred ccCCCccEEEEEeccCCcHHHHHHhhhccccccccCHHHHHHHHHHHHHHHHHHHcC---CcccCCCCcceEEEcCCCCE
Confidence 11 112489999999999999997543222222589999999999999999999999 99999999999999999999
Q ss_pred EEcccccccccCcccccccccCCCccccccccccccCccccCCCCCCcccccccCCcCCCccccCCccHHHHHH-HhCCC
Q 040925 682 HVCDFGLAKFLSDHQLDTAVKTPSSSIGLKGTVGYVAPEYGMGSEASMTGDIFTGRRPIDAVFNEGHSLHEFAK-TALPE 760 (833)
Q Consensus 682 kL~DfG~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~s~~~~~~~~~~~g~~l~~~~~-~~~p~ 760 (833)
||+|||+|+......... ......+|+.|+|||++.+..++.++|||| +|++++++++ +..|+
T Consensus 177 kl~Dfg~a~~~~~~~~~~------~~~~~~~~~~y~aPE~~~~~~~~~~~Di~s----------lG~il~ell~~g~~p~ 240 (323)
T 3qup_A 177 CVADFGLSRKIYSGDYYR------QGCASKLPVKWLALESLADNLYTVHSDVWA----------FGVTMWEIMTRGQTPY 240 (323)
T ss_dssp EECCCCC-----------------------CCGGGCCHHHHHHCCCCHHHHHHH----------HHHHHHHHHTTSCCTT
T ss_pred EEeecccccccccccccc------ccccccCcccccCchhhcCCCCCCccchhh----------HHHHHHHHHhCCCCCc
Confidence 999999998764432211 111235788999999999999999999999 7888888888 67776
Q ss_pred cccccccccchhhhccccchhhhhhhhchHHHHHHHHHHhhccCCCCCCCCCCHHHHHHHHHHhhhh
Q 040925 761 KVMEIVDPSLLMEVMTNNSMIQEDKRVKTEECLNAIIRTGVLCSMESPFERMDMRDVVAKLCHTRET 827 (833)
Q Consensus 761 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~i~~~ 827 (833)
..... ........... ....+..+++.+.+++.+||+.||++|||+.++++.|+++.++
T Consensus 241 ~~~~~--~~~~~~~~~~~------~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~l~~~l~~ 299 (323)
T 3qup_A 241 AGIEN--AEIYNYLIGGN------RLKQPPECMEEVYDLMYQCWSADPKQRPSFTCLRMELENILGH 299 (323)
T ss_dssp TTCCG--GGHHHHHHTTC------CCCCCTTCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHHHHHHC
T ss_pred cccCh--HHHHHHHhcCC------CCCCCCccCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHHH
Confidence 52221 11111111111 0111233556789999999999999999999999999999764
No 103
>3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor, ATP-binding, nucleotide-binding, oncogene, TRAN; HET: B91; 1.22A {Mus musculus} SCOP: d.144.1.7 PDB: 2qoh_A* 3kf4_A* 3k5v_A* 1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A* 3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A* 3oy3_A* 2hiw_A* 2v7a_A* ...
Probab=100.00 E-value=2.1e-39 Score=341.10 Aligned_cols=262 Identities=23% Similarity=0.427 Sum_probs=212.0
Q ss_pred HHhcCCccCceeccCcceEEEEEEECCCceEEEEEEeeccCCcchhHHHHHHHHHhhcCCCccceEeeEeecCCCCCCce
Q 040925 528 KATGEFSSSNMIGQGSFGYVYKGTLGEDEMIVAVKVINLKYKGASRSFVAECEALRNIRHRNLIKIITICSSTDFKGTDF 607 (833)
Q Consensus 528 ~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~ 607 (833)
...++|++.+.||+|+||.||+|.+..++..||+|+++.. ....+.+.+|++++++++||||+++++++.... .
T Consensus 10 ~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~-~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~-----~ 83 (288)
T 3kfa_A 10 MERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKED-TMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREP-----P 83 (288)
T ss_dssp CCGGGEEEEEESGGGTTCSEEEEEEGGGTEEEEEEEECSC-STHHHHHHHHHHHHHHCCCTTBCCEEEEECSSS-----S
T ss_pred ccccceeEEeecCCCCceeEEEeEecCCCEEEEEEecCcC-HHHHHHHHHHHHHHHhCCCCCEeeEEEEEccCC-----C
Confidence 3457899999999999999999999988999999999743 335578999999999999999999999975544 7
Q ss_pred EeEEEEecCCCChhhhhccCCCccccccCCHHHHHHHHHHHHHHHHHHhhcCCCCceeeCCCCCCeeecCCCcEEEcccc
Q 040925 608 KAFVFEYMENGSLKDWLHQSDDQVEVCKLSLIQRVNIAIDVASAMEYLHHHCQPPMVHGDLKPSNVLLDHDMVAHVCDFG 687 (833)
Q Consensus 608 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~gL~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kL~DfG 687 (833)
.++||||+++|+|.+++...... .+++..++.++.|++.||+|||+. +|+||||||+||+++.++.+||+|||
T Consensus 84 ~~~v~e~~~~~~L~~~~~~~~~~----~~~~~~~~~i~~~i~~~l~~lH~~---~i~H~dikp~Nil~~~~~~~~l~Dfg 156 (288)
T 3kfa_A 84 FYIITEFMTYGNLLDYLRECNRQ----EVSAVVLLYMATQISSAMEYLEKK---NFIHRDLAARNCLVGENHLVKVADFG 156 (288)
T ss_dssp EEEEEECCTTEEHHHHHHHCCTT----TSCHHHHHHHHHHHHHHHHHHHHH---TCCCSCCSGGGEEECGGGCEEECCCC
T ss_pred EEEEEEcCCCCcHHHHHHhcccC----CccHhHHHHHHHHHHHHHHHHHHC---CccCCCCCcceEEEcCCCCEEEccCc
Confidence 89999999999999999875432 689999999999999999999999 99999999999999999999999999
Q ss_pred cccccCcccccccccCCCccccccccccccCccccCCCCCCcccccccCCcCCCccccCCccHHHHHH-HhCCCcccccc
Q 040925 688 LAKFLSDHQLDTAVKTPSSSIGLKGTVGYVAPEYGMGSEASMTGDIFTGRRPIDAVFNEGHSLHEFAK-TALPEKVMEIV 766 (833)
Q Consensus 688 ~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~s~~~~~~~~~~~g~~l~~~~~-~~~p~~~~~~~ 766 (833)
++......... ......+|+.|+|||++.+..++.++|||| .|++++++++ +..|+...+.
T Consensus 157 ~~~~~~~~~~~-------~~~~~~~~~~y~aPE~~~~~~~~~~~Di~s----------lG~il~~ll~~g~~p~~~~~~- 218 (288)
T 3kfa_A 157 LSRLMTGDTYT-------AHAGAKFPIKWTAPESLAYNKFSIKSDVWA----------FGVLLWEIATYGMSPYPGIDL- 218 (288)
T ss_dssp GGGTSCSSSSE-------EETTEEECGGGCCHHHHHHCCCCHHHHHHH----------HHHHHHHHHTTSCCSSTTCCG-
T ss_pred cceeccCCccc-------cccCCccccCcCChhhhccCCCCchhhHHH----------HHHHHHHHHhCCCCCCCCCCH-
Confidence 99876543221 112345788999999999889999999999 7888888888 7666642221
Q ss_pred cccchhhhccccchhhhhhhhchHHHHHHHHHHhhccCCCCCCCCCCHHHHHHHHHHhhhh
Q 040925 767 DPSLLMEVMTNNSMIQEDKRVKTEECLNAIIRTGVLCSMESPFERMDMRDVVAKLCHTRET 827 (833)
Q Consensus 767 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~i~~~ 827 (833)
....+...... ....+..+++.+.+++.+||..||++|||++|+++.|+.+.+.
T Consensus 219 --~~~~~~~~~~~-----~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~~~~~l~~~~~~ 272 (288)
T 3kfa_A 219 --SQVYELLEKDY-----RMERPEGCPEKVYELMRACWQWNPSDRPSFAEIHQAFETMFQE 272 (288)
T ss_dssp --GGHHHHHHTTC-----CCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred --HHHHHHHhccC-----CCCCCCCCCHHHHHHHHHHhCCChhhCcCHHHHHHHHHHHHHh
Confidence 11111111110 0111233466789999999999999999999999999988754
No 104
>3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene, ATP-binding, cell cycle, disea mutation, glycoprotein, membrane, nucleotide-binding; HET: 03P; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A* 1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 4g5j_A* 1xkk_A* 2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A* ...
Probab=100.00 E-value=4.2e-39 Score=344.85 Aligned_cols=259 Identities=21% Similarity=0.362 Sum_probs=199.6
Q ss_pred cCCccCceeccCcceEEEEEEECCCceE----EEEEEeeccC-CcchhHHHHHHHHHhhcCCCccceEeeEeecCCCCCC
Q 040925 531 GEFSSSNMIGQGSFGYVYKGTLGEDEMI----VAVKVINLKY-KGASRSFVAECEALRNIRHRNLIKIITICSSTDFKGT 605 (833)
Q Consensus 531 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~----vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~ 605 (833)
++|++.+.||+|+||.||+|++..+++. ||+|.++... ....+.+.+|+.++++++||||+++++++...
T Consensus 15 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~----- 89 (327)
T 3poz_A 15 TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTS----- 89 (327)
T ss_dssp GGEEEEEEEEEETTEEEEEEEECC----CCEEEEEEEC-------CHHHHHHHHHHHHHCCBTTBCCEEEEEESS-----
T ss_pred HHcccceEEeeCCCeEEEEEEEcCCCceEEEEEEEeecccccCHHHHHHHHHHHHHHHhCCCCCEeEEEEEEecC-----
Confidence 5799999999999999999998777665 5788775332 23457899999999999999999999998653
Q ss_pred ceEeEEEEecCCCChhhhhccCCCccccccCCHHHHHHHHHHHHHHHHHHhhcCCCCceeeCCCCCCeeecCCCcEEEcc
Q 040925 606 DFKAFVFEYMENGSLKDWLHQSDDQVEVCKLSLIQRVNIAIDVASAMEYLHHHCQPPMVHGDLKPSNVLLDHDMVAHVCD 685 (833)
Q Consensus 606 ~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~gL~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kL~D 685 (833)
..++||||+++|+|.+++..... .+++..++.|+.|++.||+|||+. +|+||||||+||+++.++.+||+|
T Consensus 90 -~~~~v~e~~~~g~L~~~l~~~~~-----~~~~~~~~~~~~qi~~~l~~LH~~---~ivH~Dikp~NIll~~~~~~kl~D 160 (327)
T 3poz_A 90 -TVQLITQLMPFGCLLDYVREHKD-----NIGSQYLLNWCVQIAKGMNYLEDR---RLVHRDLAARNVLVKTPQHVKITD 160 (327)
T ss_dssp -SEEEEEECCTTCBHHHHHHHSTT-----SCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEEEETTEEEECC
T ss_pred -CeEEEEEecCCCcHHHHHHhcCC-----CCCHHHHHHHHHHHHHHHHHHhhC---CeeCCCCChheEEECCCCCEEEcc
Confidence 36799999999999999987542 689999999999999999999999 999999999999999999999999
Q ss_pred cccccccCcccccccccCCCccccccccccccCccccCCCCCCcccccccCCcCCCccccCCccHHHHHH-HhCCCcccc
Q 040925 686 FGLAKFLSDHQLDTAVKTPSSSIGLKGTVGYVAPEYGMGSEASMTGDIFTGRRPIDAVFNEGHSLHEFAK-TALPEKVME 764 (833)
Q Consensus 686 fG~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~s~~~~~~~~~~~g~~l~~~~~-~~~p~~~~~ 764 (833)
||+|+......... ......||+.|+|||++.+..++.++|||| +|++++++++ +..|+....
T Consensus 161 fg~a~~~~~~~~~~------~~~~~~~t~~y~aPE~~~~~~~~~~~Di~s----------lG~il~ellt~g~~p~~~~~ 224 (327)
T 3poz_A 161 FGLAKLLGAEEKEY------HAEGGKVPIKWMALESILHRIYTHQSDVWS----------YGVTVWELMTFGSKPYDGIP 224 (327)
T ss_dssp TTHHHHHTTTCC-------------CCCGGGSCHHHHHHCCCCHHHHHHH----------HHHHHHHHHTTSCCTTTTCC
T ss_pred CcceeEccCCcccc------cccCCCccccccChHHhccCCCCchhhhhh----------hHHHHHHHHhcCCCCccCCC
Confidence 99998765432211 112245788999999999999999999999 7888888888 777765322
Q ss_pred cccccchhhhccccchhhhhhhhchHHHHHHHHHHhhccCCCCCCCCCCHHHHHHHHHHhhhh
Q 040925 765 IVDPSLLMEVMTNNSMIQEDKRVKTEECLNAIIRTGVLCSMESPFERMDMRDVVAKLCHTRET 827 (833)
Q Consensus 765 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~i~~~ 827 (833)
.. .......... ....+..++..+.+++.+||+.||++|||++|+++.|+.+.+.
T Consensus 225 ~~---~~~~~~~~~~-----~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~ell~~l~~~~~~ 279 (327)
T 3poz_A 225 AS---EISSILEKGE-----RLPQPPICTIDVYMIMVKCWMIDADSRPKFRELIIEFSKMARD 279 (327)
T ss_dssp GG---GHHHHHHTTC-----CCCCCTTBCHHHHHHHHHHTCSCGGGSCCHHHHHHHHHHHHTS
T ss_pred HH---HHHHHHHcCC-----CCCCCccCCHHHHHHHHHHcCCChhhCCCHHHHHHHHHHHHhh
Confidence 11 1111111110 0111233456788999999999999999999999999988753
No 105
>3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens}
Probab=100.00 E-value=2.1e-39 Score=352.37 Aligned_cols=266 Identities=21% Similarity=0.325 Sum_probs=205.2
Q ss_pred hcCCccCceeccCcceEEEEEEE-----CCCceEEEEEEeeccC-CcchhHHHHHHHHHhhcCCCccceEeeEeecCCCC
Q 040925 530 TGEFSSSNMIGQGSFGYVYKGTL-----GEDEMIVAVKVINLKY-KGASRSFVAECEALRNIRHRNLIKIITICSSTDFK 603 (833)
Q Consensus 530 ~~~y~~~~~lg~G~~g~Vy~~~~-----~~~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~ 603 (833)
.++|++.+.||+|+||.||+|++ ..+++.||||+++... ......+.+|+.++++++||||+++++++....
T Consensus 70 ~~~~~~~~~LG~G~fg~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~-- 147 (367)
T 3l9p_A 70 RKNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQNIVRCIGVSLQSL-- 147 (367)
T ss_dssp GGGEEEEEECCCCSSSCEEEEEECC-----CCEEEEEEECCSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSS--
T ss_pred HhHeEEeeEeeeCCCEEEEEEEEccCCCCCcceeEEEEecccccChhhHHHHHHHHHHHHhCCCCCCCeEEEEEecCC--
Confidence 35799999999999999999994 4567899999996432 233457889999999999999999999976544
Q ss_pred CCceEeEEEEecCCCChhhhhccCCCc-cccccCCHHHHHHHHHHHHHHHHHHhhcCCCCceeeCCCCCCeeecCCC---
Q 040925 604 GTDFKAFVFEYMENGSLKDWLHQSDDQ-VEVCKLSLIQRVNIAIDVASAMEYLHHHCQPPMVHGDLKPSNVLLDHDM--- 679 (833)
Q Consensus 604 ~~~~~~lv~e~~~~gsL~~~l~~~~~~-~~~~~l~~~~~~~i~~qi~~gL~~LH~~~~~~ivH~Dlkp~NIll~~~~--- 679 (833)
..++||||+++|+|.+++...... .....+++.+++.++.|++.||+|||+. +|+||||||+||+++.++
T Consensus 148 ---~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivHrDlkp~NIll~~~~~~~ 221 (367)
T 3l9p_A 148 ---PRFILLELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACGCQYLEEN---HFIHRDIAARNCLLTCPGPGR 221 (367)
T ss_dssp ---SCEEEEECCTTEEHHHHHHHHSCCSSSCCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEESCSSTTC
T ss_pred ---CCEEEEEeCCCCCHHHHHHhhccccCccccccHHHHHHHHHHHHHHHHHHHhC---CeeCCCCChhhEEEecCCCCc
Confidence 679999999999999999865421 1122589999999999999999999999 999999999999999555
Q ss_pred cEEEcccccccccCcccccccccCCCccccccccccccCccccCCCCCCcccccccCCcCCCccccCCccHHHHHH-HhC
Q 040925 680 VAHVCDFGLAKFLSDHQLDTAVKTPSSSIGLKGTVGYVAPEYGMGSEASMTGDIFTGRRPIDAVFNEGHSLHEFAK-TAL 758 (833)
Q Consensus 680 ~~kL~DfG~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~s~~~~~~~~~~~g~~l~~~~~-~~~ 758 (833)
.+||+|||+|+........ .......||+.|+|||++.+..++.++|||| +|++++++++ +..
T Consensus 222 ~~kL~DFG~a~~~~~~~~~------~~~~~~~~t~~y~aPE~~~~~~~~~~~Dvws----------lG~il~ellt~g~~ 285 (367)
T 3l9p_A 222 VAKIGDFGMARDIYRAGYY------RKGGCAMLPVKWMPPEAFMEGIFTSKTDTWS----------FGVLLWEIFSLGYM 285 (367)
T ss_dssp CEEECCCHHHHHHHHHSSC------TTCCGGGSCGGGCCHHHHHHCCCCHHHHHHH----------HHHHHHHHHTTSCC
T ss_pred eEEECCCcccccccccccc------ccCCCcCCcccEECHHHhcCCCCCcHHHHHH----------HHHHHHHHHhCCCC
Confidence 5999999999865432211 1122346899999999998889999999999 7778888887 767
Q ss_pred CCcccccccccchhhhccccchhhhhhhhchHHHHHHHHHHhhccCCCCCCCCCCHHHHHHHHHHhhhh
Q 040925 759 PEKVMEIVDPSLLMEVMTNNSMIQEDKRVKTEECLNAIIRTGVLCSMESPFERMDMRDVVAKLCHTRET 827 (833)
Q Consensus 759 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~i~~~ 827 (833)
|+..... ........... ....+..++..+.+++.+||+.||++|||++||++.|+.+.+.
T Consensus 286 pf~~~~~--~~~~~~i~~~~------~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~eil~~l~~~~~~ 346 (367)
T 3l9p_A 286 PYPSKSN--QEVLEFVTSGG------RMDPPKNCPGPVYRIMTQCWQHQPEDRPNFAIILERIEYCTQD 346 (367)
T ss_dssp SSTTCCH--HHHHHHHHTTC------CCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHC
T ss_pred CCCCCCH--HHHHHHHHcCC------CCCCCccCCHHHHHHHHHHcCCCHhHCcCHHHHHHHHHHHhhC
Confidence 7652211 11111111110 0111223456788999999999999999999999999998764
No 106
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=2e-37 Score=340.86 Aligned_cols=336 Identities=18% Similarity=0.192 Sum_probs=177.2
Q ss_pred CCCCCEEEccCCcccccCCccCCCCCCCCEEEcCCCcccccCCccccCCCCCcEEECCCcccccccCchhhcCCCCccEE
Q 040925 22 LSDLEVIRIMGNSLGGKIPTTLGLLRNLVSLNVAENKFSGMFPRSICNISSLELIQLALNRFSGNLPFDIVVNLPNLKAL 101 (833)
Q Consensus 22 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L 101 (833)
+.+++.|++++|.++...+..|..+++|++|+|++|.++++.+..|.++++|++|+|++|+++ .+++..|.++++|++|
T Consensus 44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L 122 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVL 122 (390)
T ss_dssp GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEE
T ss_pred cCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCC-cCCHHHhcCCCCCCEE
Confidence 345555555555554444444455555555555555555444455555555555555555554 4444445555555555
Q ss_pred EccCCcceeeCCccccCCCCCcEEEcccCccccccCcCccCCCcCceEecccccCCCCCCCCcccccccCCCCCCCEEEc
Q 040925 102 AIGGNNFFGSIPYSLSNASNLELLDLSVNQFKGNVSIDFSSLKNLLWLNLEQNNLGTGTATDLDFVTFLTNCSSLKALSL 181 (833)
Q Consensus 102 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~l~~L~~L~L 181 (833)
+|++|.++...+..|.++++|++|+|++|+++++.+..|..+++|++|+|++|.++.++ +..+++|+.|++
T Consensus 123 ~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~---------~~~l~~L~~L~l 193 (390)
T 3o6n_A 123 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---------LSLIPSLFHANV 193 (390)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC---------GGGCTTCSEEEC
T ss_pred ECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc---------cccccccceeec
Confidence 55555555333333455555555555555555555555555555555555555544321 223344444444
Q ss_pred cCCcCcccCChhHhhhcccccEEEccCccccccCChhhhcCCCCCeEeccCCcccccCCccccCCCCCCEEEcccccCcc
Q 040925 182 ADNQFGGELPHSIANLSSTVINFGIGRNQISGTIPPGIRNLVNLIGFGAEENQLHGTIPDAIGELKNLQKLCLFRNFLQG 261 (833)
Q Consensus 182 s~N~l~~~~p~~~~~l~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 261 (833)
++|.+ .+ +...++|++|++++|.+..
T Consensus 194 ~~n~l-------------------------------------------------~~-----~~~~~~L~~L~l~~n~l~~ 219 (390)
T 3o6n_A 194 SYNLL-------------------------------------------------ST-----LAIPIAVEELDASHNSINV 219 (390)
T ss_dssp CSSCC-------------------------------------------------SE-----EECCSSCSEEECCSSCCCE
T ss_pred ccccc-------------------------------------------------cc-----cCCCCcceEEECCCCeeee
Confidence 44444 32 1122345555555555553
Q ss_pred cCCccccCCCCCCeEEeecccccCCCCCCCCCCCccceeecCCceecccCCcccccccccceeeecCCCccCCCCCcccc
Q 040925 262 RIPSGLGNLTKLANLELSSNSLQGNIPSSLGNCQNLMSFTASQNKLTGALPHQLLSITTLSLYLDLSNNLLNGSLPLQVG 341 (833)
Q Consensus 262 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~ll~~L~ls~N~l~~~~~~~~~ 341 (833)
. |.. ..++|+.|+|++|++++. ..+..+++|++|++++|++++ ..|..|.
T Consensus 220 ~-~~~--~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~-------------------------~~~~~~~ 269 (390)
T 3o6n_A 220 V-RGP--VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEK-------------------------IMYHPFV 269 (390)
T ss_dssp E-ECC--CCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCE-------------------------EESGGGT
T ss_pred c-ccc--ccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCC-------------------------cChhHcc
Confidence 2 221 124556666666655532 345555555554444444432 2233444
Q ss_pred cCCCcCEEeccCCcCCCCCCccccCCCCCcEEeecCCccccccCccccCCCCCCeEEccCcccCCCchhhhcCCCCCceE
Q 040925 342 HLKNLVILDISSNQFSGVIPGTLSTCVCLEYLDISSNSFHGVIPLSLSFLKSIKELNVSSNNLSGQIPEFLKNLSVLEFL 421 (833)
Q Consensus 342 ~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~l~~l~~L~~L 421 (833)
.+++|++|+|++|++++ .|..+..+++|++|+|++|++++ .|..+..+++|+.|++++|+++... +..+++|+.|
T Consensus 270 ~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~N~i~~~~---~~~~~~L~~L 344 (390)
T 3o6n_A 270 KMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLLH-VERNQPQFDRLENLYLDHNSIVTLK---LSTHHTLKNL 344 (390)
T ss_dssp TCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCCC-CGGGHHHHTTCSEEECCSSCCCCCC---CCTTCCCSEE
T ss_pred ccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCccee-cCccccccCcCCEEECCCCccceeC---chhhccCCEE
Confidence 55555555555555553 23344555666666666666663 3444556666777777777766442 5566777888
Q ss_pred ECccCcCccccCCCCccCCCccccccCCcCCCCCcc
Q 040925 422 SLSYNHFEGEVPTKGVFSNKTKISLQGNMKLCGGID 457 (833)
Q Consensus 422 ~l~~N~l~~~~~~~~~~~~~~~l~l~~N~~~c~~~~ 457 (833)
++++|+|+|.+... .+.......+.+++..|..+.
T Consensus 345 ~l~~N~~~~~~~~~-~~~~~~~~~~~~~~~~c~~~~ 379 (390)
T 3o6n_A 345 TLSHNDWDCNSLRA-LFRNVARPAVDDADQHCKIDY 379 (390)
T ss_dssp ECCSSCEEHHHHHH-HTTTCCTTTBCCCCSCCCTTC
T ss_pred EcCCCCccchhHHH-HHHHHHhhcccccCceecccc
Confidence 88888888765322 234444555677777776543
No 107
>3o0g_A Cell division protein kinase 5; kinase activator complex, kinase inhibitor complex, transferase-transferase activator complex; HET: 3O0; 1.95A {Homo sapiens} SCOP: d.144.1.7 PDB: 1unh_A* 1ung_A* 1unl_A* 1h4l_A
Probab=100.00 E-value=1.1e-38 Score=336.29 Aligned_cols=258 Identities=20% Similarity=0.289 Sum_probs=192.8
Q ss_pred cCCccCceeccCcceEEEEEEECCCceEEEEEEeeccCC--cchhHHHHHHHHHhhcCCCccceEeeEeecCCCCCCceE
Q 040925 531 GEFSSSNMIGQGSFGYVYKGTLGEDEMIVAVKVINLKYK--GASRSFVAECEALRNIRHRNLIKIITICSSTDFKGTDFK 608 (833)
Q Consensus 531 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~--~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~ 608 (833)
++|++.+.||+|+||+||+|++..+++.||||+++.... ...+.+.+|++++++++||||+++++++.... ..
T Consensus 2 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~-----~~ 76 (292)
T 3o0g_A 2 QKYEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLHDVLHSDK-----KL 76 (292)
T ss_dssp CSEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEESSCSSTTHHHHHHHHHHHHTTCCCTTBCCEEEEEEETT-----EE
T ss_pred CCceeeeEecCCCCeEEEEEEECCCCceEEEEeeeccCCcCCcchHHHHHHHHHhcCCCCCEeeEEeEEEeCC-----EE
Confidence 579999999999999999999999999999999975433 23467889999999999999999999976654 89
Q ss_pred eEEEEecCCCChhhhhccCCCccccccCCHHHHHHHHHHHHHHHHHHhhcCCCCceeeCCCCCCeeecCCCcEEEccccc
Q 040925 609 AFVFEYMENGSLKDWLHQSDDQVEVCKLSLIQRVNIAIDVASAMEYLHHHCQPPMVHGDLKPSNVLLDHDMVAHVCDFGL 688 (833)
Q Consensus 609 ~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~gL~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kL~DfG~ 688 (833)
++||||+++ ++.+++..... .+++..++.++.|++.||+|||+. ||+||||||+||+++.++.+||+|||+
T Consensus 77 ~lv~e~~~~-~l~~~~~~~~~-----~l~~~~~~~~~~ql~~~l~~lH~~---~ivH~dikp~Nil~~~~~~~kl~Dfg~ 147 (292)
T 3o0g_A 77 TLVFEFCDQ-DLKKYFDSCNG-----DLDPEIVKSFLFQLLKGLGFCHSR---NVLHRDLKPQNLLINRNGELKLANFGL 147 (292)
T ss_dssp EEEEECCSE-EHHHHHHHTTT-----CCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTSCEEECCCTT
T ss_pred EEEEecCCC-CHHHHHHhCCC-----CCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHEEEcCCCCEEEeeccc
Confidence 999999985 66666654332 689999999999999999999999 999999999999999999999999999
Q ss_pred ccccCcccccccccCCCccccccccccccCccccCCCC-CCcccccccCCcCCCccccCCccHHHHHHHhCCCccccccc
Q 040925 689 AKFLSDHQLDTAVKTPSSSIGLKGTVGYVAPEYGMGSE-ASMTGDIFTGRRPIDAVFNEGHSLHEFAKTALPEKVMEIVD 767 (833)
Q Consensus 689 a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~-~~~~~Di~s~~~~~~~~~~~g~~l~~~~~~~~p~~~~~~~~ 767 (833)
++....... ......||+.|+|||++.+.. ++.++|||| .|+++++++++..|+......+
T Consensus 148 ~~~~~~~~~--------~~~~~~~t~~y~aPE~~~~~~~~~~~~Diws----------lG~il~~l~~~~~p~~~~~~~~ 209 (292)
T 3o0g_A 148 ARAFGIPVR--------CYSAEVVTLWYRPPDVLFGAKLYSTSIDMWS----------AGCIFAELANAGRPLFPGNDVD 209 (292)
T ss_dssp CEECCSCCS--------CCCSCCSCGGGCCHHHHTTCSCCCTHHHHHH----------HHHHHHHHTTTSCCSCCCSSHH
T ss_pred ceecCCccc--------cccCCccccCCcChHHHcCCCCcCchHHHHH----------HHHHHHHHHHcCCCCcCCCCHH
Confidence 986643221 112346899999999987766 899999999 5555555555544432100000
Q ss_pred ccc--------------hh------hhccc-cchhhhhhhhchHHHHHHHHHHhhccCCCCCCCCCCHHHHHHH
Q 040925 768 PSL--------------LM------EVMTN-NSMIQEDKRVKTEECLNAIIRTGVLCSMESPFERMDMRDVVAK 820 (833)
Q Consensus 768 ~~~--------------~~------~~~~~-~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~ 820 (833)
... .. ..... ...............+..+.+++.+||+.||++|||++|+++.
T Consensus 210 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~h 283 (292)
T 3o0g_A 210 DQLKRIFRLLGTPTEEQWPSMTKLPDYKPYPMYPATTSLVNVVPKLNATGRDLLQNLLKCNPVQRISAEEALQH 283 (292)
T ss_dssp HHHHHHHHHHCCCCTTTCTTGGGSTTCCCCCCCCTTCCCTTTSTTCCHHHHHHHHHHSCSSGGGSCCHHHHHTS
T ss_pred HHHHHHHHHhCCCChhhhhhhcccccccccccccCCcchhhcccccChHHHHHHHHHhccChhhCCCHHHHhcC
Confidence 000 00 00000 0000000001112345678899999999999999999999863
No 108
>1rdq_E PKA C-alpha, CAMP-dependent protein kinase, alpha-catalytic SU; CAMP-dependent protein kinase,catalytic mechanism, ATP hydro two nucleotide states; HET: TPO SEP ADP ATP; 1.26A {Mus musculus} SCOP: d.144.1.7 PDB: 2erz_E* 3fjq_E* 1bkx_A* 1atp_E* 1fmo_E* 1j3h_A* 1jlu_E* 1bx6_A* 1re8_A* 1rej_A* 1rek_A* 2cpk_E* 2qcs_A* 2qvs_E* 1l3r_E* 3idb_A* 3idc_A* 3o7l_D* 3ow3_A* 3tnp_C* ...
Probab=100.00 E-value=1e-38 Score=343.59 Aligned_cols=247 Identities=21% Similarity=0.229 Sum_probs=204.1
Q ss_pred hcCCccCceeccCcceEEEEEEECCCceEEEEEEeeccC---CcchhHHHHHHHHHhhcCCCccceEeeEeecCCCCCCc
Q 040925 530 TGEFSSSNMIGQGSFGYVYKGTLGEDEMIVAVKVINLKY---KGASRSFVAECEALRNIRHRNLIKIITICSSTDFKGTD 606 (833)
Q Consensus 530 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~ 606 (833)
.++|++.+.||+|+||.||+|++..+++.||+|+++... ....+.+.+|++++++++||||+++++++.+..
T Consensus 40 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~----- 114 (350)
T 1rdq_E 40 LDQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEFSFKDNS----- 114 (350)
T ss_dssp GGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSS-----
T ss_pred HHHCEEEEEeecCcCcEEEEEEECCCCCEEEEEEEEhHHhccHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEcCC-----
Confidence 368999999999999999999999999999999996432 234567889999999999999999999976554
Q ss_pred eEeEEEEecCCCChhhhhccCCCccccccCCHHHHHHHHHHHHHHHHHHhhcCCCCceeeCCCCCCeeecCCCcEEEccc
Q 040925 607 FKAFVFEYMENGSLKDWLHQSDDQVEVCKLSLIQRVNIAIDVASAMEYLHHHCQPPMVHGDLKPSNVLLDHDMVAHVCDF 686 (833)
Q Consensus 607 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~gL~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kL~Df 686 (833)
..|+||||+++|+|.+++.... .+++..++.++.|++.||+|||+. ||+||||||+||+++.++.+||+||
T Consensus 115 ~~~lv~e~~~gg~L~~~l~~~~------~~~~~~~~~~~~qi~~aL~~LH~~---~ivHrDlkp~NIll~~~g~~kL~DF 185 (350)
T 1rdq_E 115 NLYMVMEYVAGGEMFSHLRRIG------RFSEPHARFYAAQIVLTFEYLHSL---DLIYRDLKPENLLIDQQGYIQVTDF 185 (350)
T ss_dssp EEEEEEECCTTCBHHHHHHHHC------CCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTSCEEECCC
T ss_pred EEEEEEcCCCCCcHHHHHHHcC------CCCHHHHHHHHHHHHHHHHHHHHC---CcccccCccceEEECCCCCEEEccc
Confidence 8999999999999999998654 689999999999999999999999 9999999999999999999999999
Q ss_pred ccccccCcccccccccCCCccccccccccccCccccCCCCCCcccccccCCcCCCccccCCccHHHHHHHhCCCcccccc
Q 040925 687 GLAKFLSDHQLDTAVKTPSSSIGLKGTVGYVAPEYGMGSEASMTGDIFTGRRPIDAVFNEGHSLHEFAKTALPEKVMEIV 766 (833)
Q Consensus 687 G~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~s~~~~~~~~~~~g~~l~~~~~~~~p~~~~~~~ 766 (833)
|+++..... ....+||+.|+|||++.+..++.++|||| .|+++++++++..|+.....
T Consensus 186 g~a~~~~~~-----------~~~~~gt~~y~aPE~~~~~~~~~~~Diws----------lG~il~ell~g~~Pf~~~~~- 243 (350)
T 1rdq_E 186 GFAKRVKGR-----------TWTLCGTPEALAPEIILSKGYNKAVDWWA----------LGVLIYEMAAGYPPFFADQP- 243 (350)
T ss_dssp TTCEECSSC-----------BCCCEECGGGCCHHHHTTCCBCTHHHHHH----------HHHHHHHHHHSSCSSCCSSH-
T ss_pred ccceeccCC-----------cccccCCccccCHHHhcCCCCCCcCCEec----------ccHhHhHHhhCCCCCCCCCH-
Confidence 999865432 12356999999999999999999999999 88899999999988753221
Q ss_pred cccchhhhccccchhhhhhhhchHHHHHHHHHHhhccCCCCCCCCCC-----HHHHHHH
Q 040925 767 DPSLLMEVMTNNSMIQEDKRVKTEECLNAIIRTGVLCSMESPFERMD-----MRDVVAK 820 (833)
Q Consensus 767 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt-----~~eil~~ 820 (833)
............ ..+..++..+.+++.+||+.||++||+ ++||++.
T Consensus 244 -~~~~~~i~~~~~-------~~p~~~~~~~~~li~~lL~~dp~~R~~~~~~~~~ei~~h 294 (350)
T 1rdq_E 244 -IQIYEKIVSGKV-------RFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDIKNH 294 (350)
T ss_dssp -HHHHHHHHHCCC-------CCCTTCCHHHHHHHHHHSCSCTTTCTTSSTTTTHHHHTS
T ss_pred -HHHHHHHHcCCC-------CCCCCCCHHHHHHHHHHhhcCHHhccCCccCCHHHHHhC
Confidence 111111111111 112234567889999999999999998 8888754
No 109
>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A
Probab=100.00 E-value=4.1e-39 Score=363.77 Aligned_cols=259 Identities=23% Similarity=0.427 Sum_probs=209.4
Q ss_pred hcCCccCceeccCcceEEEEEEECCCceEEEEEEeeccCCcchhHHHHHHHHHhhcCCCccceEeeEeecCCCCCCceEe
Q 040925 530 TGEFSSSNMIGQGSFGYVYKGTLGEDEMIVAVKVINLKYKGASRSFVAECEALRNIRHRNLIKIITICSSTDFKGTDFKA 609 (833)
Q Consensus 530 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~~ 609 (833)
..+|++.+.||+|+||.||+|++..++..||||+++... ...+.+.+|++++++++||||+++++++.... ..+
T Consensus 219 ~~~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~hpniv~l~~~~~~~~-----~~~ 292 (495)
T 1opk_A 219 RTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDT-MEVEEFLKEAAVMKEIKHPNLVQLLGVCTREP-----PFY 292 (495)
T ss_dssp GGGEEEEEESGGGTTSSEEEEEEGGGTEEEEEEECCSSS-SCHHHHHHHHHHHHHCCCTTBCCEEEEECSSS-----SCE
T ss_pred HHHceeeeEecCCCCeEEEEEEEcCCCeEEEEEEecCcc-cchHHHHHHHHHHHhcCCCCEeeEEEEEecCC-----cEE
Confidence 457899999999999999999999889999999997543 34678999999999999999999999986554 789
Q ss_pred EEEEecCCCChhhhhccCCCccccccCCHHHHHHHHHHHHHHHHHHhhcCCCCceeeCCCCCCeeecCCCcEEEcccccc
Q 040925 610 FVFEYMENGSLKDWLHQSDDQVEVCKLSLIQRVNIAIDVASAMEYLHHHCQPPMVHGDLKPSNVLLDHDMVAHVCDFGLA 689 (833)
Q Consensus 610 lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~gL~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kL~DfG~a 689 (833)
+||||+++|+|.+++...... .+++..++.++.|++.||+|||++ +|+||||||+||+++.++.+||+|||++
T Consensus 293 lv~E~~~~g~L~~~l~~~~~~----~~~~~~~~~i~~qi~~~L~~LH~~---~ivHrDlkp~NIll~~~~~~kl~DFG~a 365 (495)
T 1opk_A 293 IITEFMTYGNLLDYLRECNRQ----EVSAVVLLYMATQISSAMEYLEKK---NFIHRNLAARNCLVGENHLVKVADFGLS 365 (495)
T ss_dssp EEEECCTTCBHHHHHHHSCTT----TSCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECGGGCEEECCTTCE
T ss_pred EEEEccCCCCHHHHHHhcCcC----CCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCChhhEEECCCCcEEEeecccc
Confidence 999999999999999865432 689999999999999999999999 9999999999999999999999999999
Q ss_pred cccCcccccccccCCCccccccccccccCccccCCCCCCcccccccCCcCCCccccCCccHHHHHH-HhCCCcccccccc
Q 040925 690 KFLSDHQLDTAVKTPSSSIGLKGTVGYVAPEYGMGSEASMTGDIFTGRRPIDAVFNEGHSLHEFAK-TALPEKVMEIVDP 768 (833)
Q Consensus 690 ~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~s~~~~~~~~~~~g~~l~~~~~-~~~p~~~~~~~~~ 768 (833)
+......... .....+|+.|+|||++.+..++.++|||| +|++++++++ +..|+.....
T Consensus 366 ~~~~~~~~~~-------~~~~~~~~~y~aPE~~~~~~~~~~sDvwS----------lG~~l~el~t~g~~p~~~~~~--- 425 (495)
T 1opk_A 366 RLMTGDTYTA-------HAGAKFPIKWTAPESLAYNKFSIKSDVWA----------FGVLLWEIATYGMSPYPGIDL--- 425 (495)
T ss_dssp ECCTTCCEEC-------CTTCCCCGGGCCHHHHHHCEECHHHHHHH----------HHHHHHHHHTTSCCSSTTCCG---
T ss_pred eeccCCceee-------cCCCcCCcceeCHhHHhcCCCCcHHhHHh----------HHHHHHHHHhCCCCCCCCCCH---
Confidence 8765432211 11234788999999999889999999999 7788888887 6666642221
Q ss_pred cchhhhccccchhhhhhhhchHHHHHHHHHHhhccCCCCCCCCCCHHHHHHHHHHhhh
Q 040925 769 SLLMEVMTNNSMIQEDKRVKTEECLNAIIRTGVLCSMESPFERMDMRDVVAKLCHTRE 826 (833)
Q Consensus 769 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~i~~ 826 (833)
....+.+.... ....+..+++.+.+++.+||+.||++|||+.+|++.|+.+.+
T Consensus 426 ~~~~~~~~~~~-----~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~el~~~L~~~~~ 478 (495)
T 1opk_A 426 SQVYELLEKDY-----RMERPEGCPEKVYELMRACWQWNPSDRPSFAEIHQAFETMFQ 478 (495)
T ss_dssp GGHHHHHHTTC-----CCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTSCS
T ss_pred HHHHHHHHcCC-----CCCCCCCCCHHHHHHHHHHcCcChhHCcCHHHHHHHHHHHHh
Confidence 11111111110 011223456788999999999999999999999999998753
No 110
>3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat protein, ADA protein, ATP-binding, cell cycle, kinase, nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo sapiens} PDB: 2wtk_B*
Probab=100.00 E-value=1.9e-38 Score=348.61 Aligned_cols=267 Identities=18% Similarity=0.175 Sum_probs=204.6
Q ss_pred HhcCCccCceeccC--cceEEEEEEECCCceEEEEEEeeccCC--cchhHHHHHHHHHhhcCCCccceEeeEeecCCCCC
Q 040925 529 ATGEFSSSNMIGQG--SFGYVYKGTLGEDEMIVAVKVINLKYK--GASRSFVAECEALRNIRHRNLIKIITICSSTDFKG 604 (833)
Q Consensus 529 ~~~~y~~~~~lg~G--~~g~Vy~~~~~~~~~~vavK~~~~~~~--~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~ 604 (833)
..++|++.+.||+| +||.||+|++..+++.||||+++.... ...+.+.+|++++++++||||+++++++...+
T Consensus 23 ~~~~y~~~~~lG~G~~~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~--- 99 (389)
T 3gni_B 23 EGGCYELLTVIGKGFEDLMTVNLARYKPTGEYVTVRRINLEACSNEMVTFLQGELHVSKLFNHPNIVPYRATFIADN--- 99 (389)
T ss_dssp CGGGEEEEEEEEEETTTTEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETT---
T ss_pred CCCcEEEEecccCCcCCceEEEEEEEcCCCCEEEEEEecccccChHHHHHHHHHHHHHHhCCCCCCCcEeEEEEECC---
Confidence 35689999999999 999999999999999999999975432 23467888999999999999999999987655
Q ss_pred CceEeEEEEecCCCChhhhhccCCCccccccCCHHHHHHHHHHHHHHHHHHhhcCCCCceeeCCCCCCeeecCCCcEEEc
Q 040925 605 TDFKAFVFEYMENGSLKDWLHQSDDQVEVCKLSLIQRVNIAIDVASAMEYLHHHCQPPMVHGDLKPSNVLLDHDMVAHVC 684 (833)
Q Consensus 605 ~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~gL~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kL~ 684 (833)
..++||||+++|+|.+++...... .+++..++.++.|++.||+|||+. +|+||||||+||+++.++.+||+
T Consensus 100 --~~~lv~e~~~~~~L~~~l~~~~~~----~~~~~~~~~~~~qi~~~l~~LH~~---~ivHrDlkp~NIll~~~~~~kl~ 170 (389)
T 3gni_B 100 --ELWVVTSFMAYGSAKDLICTHFMD----GMNELAIAYILQGVLKALDYIHHM---GYVHRSVKASHILISVDGKVYLS 170 (389)
T ss_dssp --EEEEEEECCTTCBHHHHHHHTCTT----CCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTCCEEEC
T ss_pred --EEEEEEEccCCCCHHHHHhhhccc----CCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHEEEcCCCCEEEc
Confidence 899999999999999999875322 689999999999999999999999 99999999999999999999999
Q ss_pred ccccccccCcccccccccCCCccccccccccccCccccCC--CCCCcccccccCCcCCCccccCCccHHHHHHHhCCCcc
Q 040925 685 DFGLAKFLSDHQLDTAVKTPSSSIGLKGTVGYVAPEYGMG--SEASMTGDIFTGRRPIDAVFNEGHSLHEFAKTALPEKV 762 (833)
Q Consensus 685 DfG~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~--~~~~~~~Di~s~~~~~~~~~~~g~~l~~~~~~~~p~~~ 762 (833)
|||.+............ .........||+.|+|||++.+ ..++.++|||| .|+++++++++..|+..
T Consensus 171 dfg~~~~~~~~~~~~~~-~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~Diws----------lG~il~el~~g~~pf~~ 239 (389)
T 3gni_B 171 GLRSNLSMISHGQRQRV-VHDFPKYSVKVLPWLSPEVLQQNLQGYDAKSDIYS----------VGITACELANGHVPFKD 239 (389)
T ss_dssp CGGGCEECEETTEECSC-BCCCCTTCTTTGGGSCHHHHSTTSSCBCTHHHHHH----------HHHHHHHHHHSSCTTTT
T ss_pred ccccceeeccccccccc-cccccccccccccccCHHHHhccCCCCCcHhHHHH----------HHHHHHHHHHCCCCCCC
Confidence 99998765432221111 1112223479999999999887 67999999999 78888899988888752
Q ss_pred cccccccchhhhccccc---------------------------------------hhhhhhhhchHHHHHHHHHHhhcc
Q 040925 763 MEIVDPSLLMEVMTNNS---------------------------------------MIQEDKRVKTEECLNAIIRTGVLC 803 (833)
Q Consensus 763 ~~~~~~~~~~~~~~~~~---------------------------------------~~~~~~~~~~~~~~~~l~~li~~c 803 (833)
....+. ......... ............+++.+.+++.+|
T Consensus 240 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~ 317 (389)
T 3gni_B 240 MPATQM--LLEKLNGTVPCLLDTSTIPAEELTMSPSRSVANSGLSDSLTTSTPRPSNGDSPSHPYHRTFSPHFHHFVEQC 317 (389)
T ss_dssp CCSTTH--HHHC--------------------------------------------------------CCHHHHHHHHHH
T ss_pred CCHHHH--HHHHhcCCCCccccccccccccccccccccccccccccccccCccccccCCCCCCccccccCHHHHHHHHHH
Confidence 211110 000000000 000000112233556789999999
Q ss_pred CCCCCCCCCCHHHHHHH
Q 040925 804 SMESPFERMDMRDVVAK 820 (833)
Q Consensus 804 l~~dP~~RPt~~eil~~ 820 (833)
|+.||++|||++|+++.
T Consensus 318 L~~dP~~Rpta~ell~h 334 (389)
T 3gni_B 318 LQRNPDARPSASTLLNH 334 (389)
T ss_dssp TCSCTTTSCCHHHHTTS
T ss_pred hhcCcccCCCHHHHhcC
Confidence 99999999999999865
No 111
>1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET: ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A* 2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A* 2jko_A* 2jkk_A*
Probab=100.00 E-value=5.7e-39 Score=336.34 Aligned_cols=262 Identities=20% Similarity=0.299 Sum_probs=196.9
Q ss_pred HhcCCccCceeccCcceEEEEEEECCC---ceEEEEEEeeccCC-cchhHHHHHHHHHhhcCCCccceEeeEeecCCCCC
Q 040925 529 ATGEFSSSNMIGQGSFGYVYKGTLGED---EMIVAVKVINLKYK-GASRSFVAECEALRNIRHRNLIKIITICSSTDFKG 604 (833)
Q Consensus 529 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~---~~~vavK~~~~~~~-~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~ 604 (833)
..++|++.+.||+|+||.||+|++..+ +..||+|+++.... ...+.+.+|+.++++++||||+++++++..
T Consensus 13 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~----- 87 (281)
T 1mp8_A 13 QRERIELGRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLIGVITE----- 87 (281)
T ss_dssp CGGGEEEEEEEEECSSSEEEEEEECCC--CCEEEEEEECTTTTSHHHHHHHHHHHHHHHTCCCTTBCCEEEEECS-----
T ss_pred ehHHeEEEeEeeecCCeeEEEEEEecCCCCceEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCccceEEEEEcc-----
Confidence 346899999999999999999998643 56799999864332 234678999999999999999999998632
Q ss_pred CceEeEEEEecCCCChhhhhccCCCccccccCCHHHHHHHHHHHHHHHHHHhhcCCCCceeeCCCCCCeeecCCCcEEEc
Q 040925 605 TDFKAFVFEYMENGSLKDWLHQSDDQVEVCKLSLIQRVNIAIDVASAMEYLHHHCQPPMVHGDLKPSNVLLDHDMVAHVC 684 (833)
Q Consensus 605 ~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~gL~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kL~ 684 (833)
+..++||||+++|+|.+++..... .+++..++.++.|++.||+|||+. +|+||||||+||+++.++.+||+
T Consensus 88 -~~~~lv~e~~~~~~L~~~l~~~~~-----~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~kl~ 158 (281)
T 1mp8_A 88 -NPVWIIMELCTLGELRSFLQVRKY-----SLDLASLILYAYQLSTALAYLESK---RFVHRDIAARNVLVSSNDCVKLG 158 (281)
T ss_dssp -SSCEEEEECCTTEEHHHHHHHTTT-----TSCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEEEETTEEEEC
T ss_pred -CccEEEEecCCCCCHHHHHHhcCC-----CCCHHHHHHHHHHHHHHHHHHHhC---CeecccccHHHEEECCCCCEEEC
Confidence 257899999999999999976532 589999999999999999999999 99999999999999999999999
Q ss_pred ccccccccCcccccccccCCCccccccccccccCccccCCCCCCcccccccCCcCCCccccCCccHHHHHH-HhCCCccc
Q 040925 685 DFGLAKFLSDHQLDTAVKTPSSSIGLKGTVGYVAPEYGMGSEASMTGDIFTGRRPIDAVFNEGHSLHEFAK-TALPEKVM 763 (833)
Q Consensus 685 DfG~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~s~~~~~~~~~~~g~~l~~~~~-~~~p~~~~ 763 (833)
|||+++......... .....+|+.|+|||++.+..++.++|||| +|++++++++ +..|+...
T Consensus 159 Dfg~~~~~~~~~~~~-------~~~~~~~~~y~aPE~~~~~~~~~~~Di~s----------lG~~l~ell~~g~~pf~~~ 221 (281)
T 1mp8_A 159 DFGLSRYMEDSTYYK-------ASKGKLPIKWMAPESINFRRFTSASDVWM----------FGVCMWEILMHGVKPFQGV 221 (281)
T ss_dssp C--------------------------CCGGGCCHHHHHHCCCSHHHHHHH----------HHHHHHHHHTTSCCTTTTC
T ss_pred ccccccccCcccccc-------cccCCCcccccChhhcccCCCCCccCchH----------HHHHHHHHHhcCCCCCCcC
Confidence 999998765432111 11234788999999998889999999999 7778888875 66666422
Q ss_pred ccccccchhhhccccchhhhhhhhchHHHHHHHHHHhhccCCCCCCCCCCHHHHHHHHHHhhhhhh
Q 040925 764 EIVDPSLLMEVMTNNSMIQEDKRVKTEECLNAIIRTGVLCSMESPFERMDMRDVVAKLCHTRETFL 829 (833)
Q Consensus 764 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~i~~~~~ 829 (833)
... .......... ....+..+++.+.+++.+||+.||++|||+.|+++.|+++.+...
T Consensus 222 ~~~--~~~~~i~~~~------~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~l~~~~~~~~ 279 (281)
T 1mp8_A 222 KNN--DVIGRIENGE------RLPMPPNCPPTLYSLMTKCWAYDPSRRPRFTELKAQLSTILEEEK 279 (281)
T ss_dssp CGG--GHHHHHHTTC------CCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHHH
T ss_pred CHH--HHHHHHHcCC------CCCCCCCCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHHHhc
Confidence 111 1111111110 011223456778999999999999999999999999999987643
No 112
>1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7
Probab=100.00 E-value=4.6e-39 Score=347.68 Aligned_cols=272 Identities=23% Similarity=0.338 Sum_probs=209.5
Q ss_pred HHHhcCCccCceeccCcceEEEEEEEC-----CCceEEEEEEeeccCC-cchhHHHHHHHHHhhcCCCccceEeeEeecC
Q 040925 527 SKATGEFSSSNMIGQGSFGYVYKGTLG-----EDEMIVAVKVINLKYK-GASRSFVAECEALRNIRHRNLIKIITICSST 600 (833)
Q Consensus 527 ~~~~~~y~~~~~lg~G~~g~Vy~~~~~-----~~~~~vavK~~~~~~~-~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~ 600 (833)
....++|++.+.||+|+||.||+|++. .+++.||||+++.... ...+.+.+|++++++++||||+++++++...
T Consensus 43 ~~~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~ 122 (343)
T 1luf_A 43 EYPRNNIEYVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMAEFDNPNIVKLLGVCAVG 122 (343)
T ss_dssp BCCGGGCEEEEEEEECSSCEEEEEEEETSSTTSSEEEEEEEECCTTCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECSS
T ss_pred EecHHHCeeeeeeeecCCeeEEEEEecCcCCCCCceeEEEEEeccccCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEccC
Confidence 344678999999999999999999996 3568999999975432 2346789999999999999999999997654
Q ss_pred CCCCCceEeEEEEecCCCChhhhhccCCCcc------------------ccccCCHHHHHHHHHHHHHHHHHHhhcCCCC
Q 040925 601 DFKGTDFKAFVFEYMENGSLKDWLHQSDDQV------------------EVCKLSLIQRVNIAIDVASAMEYLHHHCQPP 662 (833)
Q Consensus 601 ~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~------------------~~~~l~~~~~~~i~~qi~~gL~~LH~~~~~~ 662 (833)
+ ..++||||+++|+|.+++....... ....+++.+++.++.|++.||+|||+. +
T Consensus 123 ~-----~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~~l~~LH~~---~ 194 (343)
T 1luf_A 123 K-----PMCLLFEYMAYGDLNEFLRSMSPHTVCSLSHSDLSTRARVSSPGPPPLSCAEQLCIARQVAAGMAYLSER---K 194 (343)
T ss_dssp S-----SCEEEEECCTTCBHHHHHHHTCC----------------------CCCCHHHHHHHHHHHHHHHHHHHHT---T
T ss_pred C-----ceEEEEecCCCCcHHHHHHHhCcccccccccccccccccccccCCCCCCHHHHHHHHHHHHHHHHHHHhC---C
Confidence 4 7899999999999999998643210 013689999999999999999999999 9
Q ss_pred ceeeCCCCCCeeecCCCcEEEcccccccccCcccccccccCCCccccccccccccCccccCCCCCCcccccccCCcCCCc
Q 040925 663 MVHGDLKPSNVLLDHDMVAHVCDFGLAKFLSDHQLDTAVKTPSSSIGLKGTVGYVAPEYGMGSEASMTGDIFTGRRPIDA 742 (833)
Q Consensus 663 ivH~Dlkp~NIll~~~~~~kL~DfG~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~s~~~~~~~ 742 (833)
|+||||||+||+++.++.+||+|||+++......... ......||+.|+|||++.+..++.++||||
T Consensus 195 ivH~Dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~------~~~~~~~t~~y~aPE~~~~~~~~~~~Di~s------- 261 (343)
T 1luf_A 195 FVHRDLATRNCLVGENMVVKIADFGLSRNIYSADYYK------ADGNDAIPIRWMPPESIFYNRYTTESDVWA------- 261 (343)
T ss_dssp CCCSCCSGGGEEECGGGCEEECCCSCHHHHTGGGCBC----------CCBCGGGCCHHHHHHCCCCHHHHHHH-------
T ss_pred eecCCCCcceEEECCCCeEEEeecCCCcccccCcccc------ccCCCcccceecChhhhccCCcCcccccHH-------
Confidence 9999999999999999999999999998664432111 112345899999999998889999999999
Q ss_pred cccCCccHHHHHH-HhCCCcccccccccchhhhccccchhhhhhhhchHHHHHHHHHHhhccCCCCCCCCCCHHHHHHHH
Q 040925 743 VFNEGHSLHEFAK-TALPEKVMEIVDPSLLMEVMTNNSMIQEDKRVKTEECLNAIIRTGVLCSMESPFERMDMRDVVAKL 821 (833)
Q Consensus 743 ~~~~g~~l~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L 821 (833)
+|++++++++ +..|+..... ............ ...+..++..+.+++.+||..||++|||+.++++.|
T Consensus 262 ---lG~il~el~t~g~~p~~~~~~--~~~~~~~~~~~~------~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~~~~~L 330 (343)
T 1luf_A 262 ---YGVVLWEIFSYGLQPYYGMAH--EEVIYYVRDGNI------LACPENCPLELYNLMRLCWSKLPADRPSFCSIHRIL 330 (343)
T ss_dssp ---HHHHHHHHHTTTCCTTTTSCH--HHHHHHHHTTCC------CCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHH
T ss_pred ---HHHHHHHHHhcCCCcCCCCCh--HHHHHHHhCCCc------CCCCCCCCHHHHHHHHHHcccCcccCCCHHHHHHHH
Confidence 7778888887 7767642211 111111111110 011233566789999999999999999999999999
Q ss_pred HHhhhhhhc
Q 040925 822 CHTRETFLG 830 (833)
Q Consensus 822 ~~i~~~~~~ 830 (833)
+++.+...+
T Consensus 331 ~~~~~~~~~ 339 (343)
T 1luf_A 331 QRMCERAEG 339 (343)
T ss_dssp HHTTC----
T ss_pred HHHHhhhhh
Confidence 999876543
No 113
>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A
Probab=100.00 E-value=1.8e-38 Score=354.56 Aligned_cols=255 Identities=29% Similarity=0.366 Sum_probs=205.4
Q ss_pred HhcCCccCceeccCcceEEEEEEECCCceEEEEEEeeccCCcchhHHHHHHHHHhhcCCCccceEeeEeecCCCCCCceE
Q 040925 529 ATGEFSSSNMIGQGSFGYVYKGTLGEDEMIVAVKVINLKYKGASRSFVAECEALRNIRHRNLIKIITICSSTDFKGTDFK 608 (833)
Q Consensus 529 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~ 608 (833)
..++|++.+.||+|+||.||+|++. ++.||||+++... ..+.+.+|++++++++||||+++++++.... ...
T Consensus 191 ~~~~~~~~~~lG~G~fg~V~~~~~~--~~~vavK~~~~~~--~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~----~~~ 262 (450)
T 1k9a_A 191 NMKELKLLQTIGKGEFGDVMLGDYR--GNKVAVKCIKNDA--TAQAFLAEASVMTQLRHSNLVQLLGVIVEEK----GGL 262 (450)
T ss_dssp CGGGEEEEEEEEECSSEEEEEEEET--TEEEEEEEESSCT--TSHHHHHHHHHHHTCCCTTBCCEEEEEECTT----SCE
T ss_pred ChHHeEEEeeecCcCCeeEEEEEec--CCeEEEEEeCCch--HHHHHHHHHHHHHhccCCCEEEEEEEEEcCC----Cce
Confidence 4567999999999999999999985 7799999997442 4578999999999999999999999975432 368
Q ss_pred eEEEEecCCCChhhhhccCCCccccccCCHHHHHHHHHHHHHHHHHHhhcCCCCceeeCCCCCCeeecCCCcEEEccccc
Q 040925 609 AFVFEYMENGSLKDWLHQSDDQVEVCKLSLIQRVNIAIDVASAMEYLHHHCQPPMVHGDLKPSNVLLDHDMVAHVCDFGL 688 (833)
Q Consensus 609 ~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~gL~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kL~DfG~ 688 (833)
++||||+++|+|.+++...... .+++..++.++.|++.||+|||++ +|+||||||+||+++.++.+||+|||+
T Consensus 263 ~iv~e~~~~g~L~~~l~~~~~~----~~~~~~~~~~~~qi~~~l~~LH~~---~ivHrDlkp~Nill~~~~~~kl~DfG~ 335 (450)
T 1k9a_A 263 YIVTEYMAKGSLVDYLRSRGRS----VLGGDCLLKFSLDVCEAMEYLEGN---NFVHRDLAARNVLVSEDNVAKVSDFGL 335 (450)
T ss_dssp EEEEECCTTCBHHHHHHHHCTT----TCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEECTTSCEEECCCTT
T ss_pred EEEEEecCCCcHHHHHHhcCCC----CCCHHHHHHHHHHHHHHHHHHHhC---CeeCCCCCHhhEEECCCCCEEEeeCCC
Confidence 9999999999999999865421 478999999999999999999999 999999999999999999999999999
Q ss_pred ccccCcccccccccCCCccccccccccccCccccCCCCCCcccccccCCcCCCccccCCccHHHHHH-HhCCCccccccc
Q 040925 689 AKFLSDHQLDTAVKTPSSSIGLKGTVGYVAPEYGMGSEASMTGDIFTGRRPIDAVFNEGHSLHEFAK-TALPEKVMEIVD 767 (833)
Q Consensus 689 a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~s~~~~~~~~~~~g~~l~~~~~-~~~p~~~~~~~~ 767 (833)
++...... ....+|+.|+|||++.+..++.++|||| +|++++++++ +..|+......
T Consensus 336 a~~~~~~~-----------~~~~~~~~y~aPE~~~~~~~~~~sDvws----------lG~~l~el~t~g~~P~~~~~~~- 393 (450)
T 1k9a_A 336 TKEASSTQ-----------DTGKLPVKWTAPEALREKKFSTKSDVWS----------FGILLWEIYSFGRVPYPRIPLK- 393 (450)
T ss_dssp CEECC-----------------CCCTTTSCHHHHHSSCCCHHHHHHH----------HHHHHHHHHTTTCCSSTTSCTT-
T ss_pred cccccccc-----------cCCCCCcceeCHHHhcCCCCCcHHHHHH----------HHHHHHHHHhCCCCCCCCCCHH-
Confidence 98543211 1124788999999999999999999999 7788888887 77776532211
Q ss_pred ccchhhhccccchhhhhhhhchHHHHHHHHHHhhccCCCCCCCCCCHHHHHHHHHHhhhh
Q 040925 768 PSLLMEVMTNNSMIQEDKRVKTEECLNAIIRTGVLCSMESPFERMDMRDVVAKLCHTRET 827 (833)
Q Consensus 768 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~i~~~ 827 (833)
......... . ....+..+++.+.+++.+||..||++|||+.++++.|+.+...
T Consensus 394 -~~~~~i~~~-~-----~~~~p~~~~~~l~~li~~cl~~dp~~Rpt~~~l~~~L~~i~~~ 446 (450)
T 1k9a_A 394 -DVVPRVEKG-Y-----KMDAPDGCPPAVYDVMKNCWHLDAATRPTFLQLREQLEHIRTH 446 (450)
T ss_dssp -THHHHHHTT-C-----CCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHT
T ss_pred -HHHHHHHcC-C-----CCCCCCcCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHHHh
Confidence 111111111 0 0112334677899999999999999999999999999998764
No 114
>4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase, ATP binding, phosphoryla transferase; HET: ATP; 1.75A {Homo sapiens} PDB: 4fvp_A* 4fvr_A*
Probab=100.00 E-value=2.4e-39 Score=340.88 Aligned_cols=253 Identities=19% Similarity=0.323 Sum_probs=201.9
Q ss_pred hcCCccCceeccCcceEEEEEEECCCc-------eEEEEEEeeccCCcchhHHHHHHHHHhhcCCCccceEeeEeecCCC
Q 040925 530 TGEFSSSNMIGQGSFGYVYKGTLGEDE-------MIVAVKVINLKYKGASRSFVAECEALRNIRHRNLIKIITICSSTDF 602 (833)
Q Consensus 530 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~-------~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~ 602 (833)
.++|++.+.||+|+||.||+|++..++ ..||+|+++.......+.+.+|++++++++||||+++++++...+
T Consensus 7 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~- 85 (289)
T 4fvq_A 7 NEDLIFNESLGQGTFTKIFKGVRREVGDYGQLHETEVLLKVLDKAHRNYSESFFEAASMMSKLSHKHLVLNYGVCVCGD- 85 (289)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEEEEECGGGCEEEEEEEEEEECGGGGGGHHHHHHHHHHHHTSCCTTBCCEEEEECCTT-
T ss_pred hhHeeeeeeeccCCCceEEEEEEecccccccccchhhhhhhcccccHHHHHHHHHHHHHHHhCCCCCEeEEEEEEEeCC-
Confidence 357999999999999999999987665 579999997665566678999999999999999999999976554
Q ss_pred CCCceEeEEEEecCCCChhhhhccCCCccccccCCHHHHHHHHHHHHHHHHHHhhcCCCCceeeCCCCCCeeecCCCc--
Q 040925 603 KGTDFKAFVFEYMENGSLKDWLHQSDDQVEVCKLSLIQRVNIAIDVASAMEYLHHHCQPPMVHGDLKPSNVLLDHDMV-- 680 (833)
Q Consensus 603 ~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~gL~~LH~~~~~~ivH~Dlkp~NIll~~~~~-- 680 (833)
..++||||+++|+|.+++..... .+++..++.++.|++.||+|||+. +|+||||||+||+++.++.
T Consensus 86 ----~~~lv~e~~~~~~L~~~l~~~~~-----~~~~~~~~~i~~qi~~~L~~LH~~---~ivH~Dlkp~NIll~~~~~~~ 153 (289)
T 4fvq_A 86 ----ENILVQEFVKFGSLDTYLKKNKN-----CINILWKLEVAKQLAAAMHFLEEN---TLIHGNVCAKNILLIREEDRK 153 (289)
T ss_dssp ----CCEEEEECCTTCBHHHHHHHTGG-----GCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEEEECCBGG
T ss_pred ----CCEEEEECCCCCCHHHHHHhCCC-----CCCHHHHHHHHHHHHHHHHHHhhC---CeECCCcCcceEEEecCCccc
Confidence 77999999999999999987542 489999999999999999999999 9999999999999998886
Q ss_pred ------EEEcccccccccCcccccccccCCCccccccccccccCccccCC-CCCCcccccccCCcCCCccccCCccHHHH
Q 040925 681 ------AHVCDFGLAKFLSDHQLDTAVKTPSSSIGLKGTVGYVAPEYGMG-SEASMTGDIFTGRRPIDAVFNEGHSLHEF 753 (833)
Q Consensus 681 ------~kL~DfG~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Di~s~~~~~~~~~~~g~~l~~~ 753 (833)
+||+|||++....... ...||+.|+|||++.+ ..++.++|||| +|++++++
T Consensus 154 ~~~~~~~kl~Dfg~~~~~~~~~------------~~~~~~~y~aPE~~~~~~~~~~~~Diws----------lG~il~el 211 (289)
T 4fvq_A 154 TGNPPFIKLSDPGISITVLPKD------------ILQERIPWVPPECIENPKNLNLATDKWS----------FGTTLWEI 211 (289)
T ss_dssp GTBCCEEEECCCCSCTTTSCHH------------HHHHTTTTSCHHHHHCGGGCCHHHHHHH----------HHHHHHHH
T ss_pred ccccceeeeccCcccccccCcc------------ccCCcCcccCHHHhCCCCCCCchhHHHH----------HHHHHHHH
Confidence 9999999997654322 1348899999999887 67999999999 77788888
Q ss_pred HHHhCCCc-ccccccccchhhhccccchhhhhhhhchHHHHHHHHHHhhccCCCCCCCCCCHHHHHHHHHHhhhh
Q 040925 754 AKTALPEK-VMEIVDPSLLMEVMTNNSMIQEDKRVKTEECLNAIIRTGVLCSMESPFERMDMRDVVAKLCHTRET 827 (833)
Q Consensus 754 ~~~~~p~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~i~~~ 827 (833)
+++..++. ..+ ............ ..+...++.+.+++.+||+.||++|||++|+++.|+++...
T Consensus 212 ~~g~~~~~~~~~---~~~~~~~~~~~~-------~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~l~~l~~p 276 (289)
T 4fvq_A 212 CSGGDKPLSALD---SQRKLQFYEDRH-------QLPAPKAAELANLINNCMDYEPDHRPSFRAIIRDLNSLFTP 276 (289)
T ss_dssp HTTTCCTTTTSC---HHHHHHHHHTTC-------CCCCCSSCTTHHHHHHHSCSSGGGSCCHHHHHHHHHTCC--
T ss_pred HcCCCCCccccc---hHHHHHHhhccC-------CCCCCCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHHhcCC
Confidence 88544432 111 111111111000 00111244678999999999999999999999999988654
No 115
>2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET; nucleotide-binding, hirschsprung disease, phosphorylation, disease mutation; HET: ACK; 2.00A {Homo sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A* 2ivv_A*
Probab=100.00 E-value=1.1e-38 Score=340.30 Aligned_cols=267 Identities=21% Similarity=0.332 Sum_probs=208.9
Q ss_pred HhcCCccCceeccCcceEEEEEEE-----CCCceEEEEEEeeccCC-cchhHHHHHHHHHhhcCCCccceEeeEeecCCC
Q 040925 529 ATGEFSSSNMIGQGSFGYVYKGTL-----GEDEMIVAVKVINLKYK-GASRSFVAECEALRNIRHRNLIKIITICSSTDF 602 (833)
Q Consensus 529 ~~~~y~~~~~lg~G~~g~Vy~~~~-----~~~~~~vavK~~~~~~~-~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~ 602 (833)
..++|.+.+.||+|+||.||+|++ ..+++.||||+++.... ...+.+.+|++++++++||||+++++++...+
T Consensus 21 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~- 99 (314)
T 2ivs_A 21 PRKNLVLGKTLGEGEFGKVVKATAFHLKGRAGYTTVAVKMLKENASPSELRDLLSEFNVLKQVNHPHVIKLYGACSQDG- 99 (314)
T ss_dssp CGGGEEEEEEEEECSSSEEEEEEEETGGGCSSEEEEEEEECCTTCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSS-
T ss_pred chhheeeeeeecccCCeeEEEEEEeccCcccCcceEEEEeccCCCCHHHHHHHHHHHHHHhhCCCCceeeEEEEEecCC-
Confidence 356899999999999999999988 34568999999975432 23467899999999999999999999976544
Q ss_pred CCCceEeEEEEecCCCChhhhhccCCCcc------------------ccccCCHHHHHHHHHHHHHHHHHHhhcCCCCce
Q 040925 603 KGTDFKAFVFEYMENGSLKDWLHQSDDQV------------------EVCKLSLIQRVNIAIDVASAMEYLHHHCQPPMV 664 (833)
Q Consensus 603 ~~~~~~~lv~e~~~~gsL~~~l~~~~~~~------------------~~~~l~~~~~~~i~~qi~~gL~~LH~~~~~~iv 664 (833)
..++||||+++|+|.+++....... ....+++.+++.++.|++.||+|||+. +|+
T Consensus 100 ----~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~---~iv 172 (314)
T 2ivs_A 100 ----PLLLIVEYAKYGSLRGFLRESRKVGPGYLGSGGSRNSSSLDHPDERALTMGDLISFAWQISQGMQYLAEM---KLV 172 (314)
T ss_dssp ----SCEEEEECCTTCBHHHHHHHTTTSTTEEC----------------CEECHHHHHHHHHHHHHHHHHHHHT---TEE
T ss_pred ----ceEEEEeecCCCCHHHHHHHHhhccCCcccccccccccccccccccCcCHHHHHHHHHHHHHHHHHHHHC---CCc
Confidence 7899999999999999998754210 112489999999999999999999999 999
Q ss_pred eeCCCCCCeeecCCCcEEEcccccccccCcccccccccCCCccccccccccccCccccCCCCCCcccccccCCcCCCccc
Q 040925 665 HGDLKPSNVLLDHDMVAHVCDFGLAKFLSDHQLDTAVKTPSSSIGLKGTVGYVAPEYGMGSEASMTGDIFTGRRPIDAVF 744 (833)
Q Consensus 665 H~Dlkp~NIll~~~~~~kL~DfG~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~s~~~~~~~~~ 744 (833)
||||||+||+++.++.+||+|||+++......... ......+|+.|+|||++.+..++.++||||
T Consensus 173 H~dikp~NIli~~~~~~kl~Dfg~~~~~~~~~~~~------~~~~~~~~~~y~aPE~~~~~~~~~~~Di~s--------- 237 (314)
T 2ivs_A 173 HRDLAARNILVAEGRKMKISDFGLSRDVYEEDSYV------KRSQGRIPVKWMAIESLFDHIYTTQSDVWS--------- 237 (314)
T ss_dssp CCCCSGGGEEEETTTEEEECCCTTCEECTTTSCEE------CSSCCCSCGGGCCHHHHHHCEECHHHHHHH---------
T ss_pred ccccchheEEEcCCCCEEEccccccccccccccce------eccCCCCcccccChhhhcCCCcCchhhHHH---------
Confidence 99999999999999999999999998664432111 111235789999999999888999999999
Q ss_pred cCCccHHHHHH-HhCCCcccccccccchhhhccccchhhhhhhhchHHHHHHHHHHhhccCCCCCCCCCCHHHHHHHHHH
Q 040925 745 NEGHSLHEFAK-TALPEKVMEIVDPSLLMEVMTNNSMIQEDKRVKTEECLNAIIRTGVLCSMESPFERMDMRDVVAKLCH 823 (833)
Q Consensus 745 ~~g~~l~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~ 823 (833)
.|++++++++ +..|+..... ......+.... ....+..+++.+.+++.+||+.||++|||+.|+++.|++
T Consensus 238 -lG~il~el~t~g~~p~~~~~~---~~~~~~~~~~~-----~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~~l~~~l~~ 308 (314)
T 2ivs_A 238 -FGVLLWEIVTLGGNPYPGIPP---ERLFNLLKTGH-----RMERPDNCSEEMYRLMLQCWKQEPDKRPVFADISKDLEK 308 (314)
T ss_dssp -HHHHHHHHHTTSCCSSTTCCG---GGHHHHHHTTC-----CCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHH
T ss_pred -HHHHHHHHHhCCCCCCCCCCH---HHHHHHhhcCC-----cCCCCccCCHHHHHHHHHHccCChhhCcCHHHHHHHHHH
Confidence 7888888888 7777642211 11111111110 011123356678999999999999999999999999999
Q ss_pred hhhh
Q 040925 824 TRET 827 (833)
Q Consensus 824 i~~~ 827 (833)
+.+.
T Consensus 309 ~~~~ 312 (314)
T 2ivs_A 309 MMVK 312 (314)
T ss_dssp HHHT
T ss_pred HHhh
Confidence 8764
No 116
>3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens}
Probab=100.00 E-value=1.5e-38 Score=348.00 Aligned_cols=269 Identities=23% Similarity=0.333 Sum_probs=209.7
Q ss_pred hcCCccCceeccCcceEEEEEEECC-------CceEEEEEEeeccCC-cchhHHHHHHHHHhhc-CCCccceEeeEeecC
Q 040925 530 TGEFSSSNMIGQGSFGYVYKGTLGE-------DEMIVAVKVINLKYK-GASRSFVAECEALRNI-RHRNLIKIITICSST 600 (833)
Q Consensus 530 ~~~y~~~~~lg~G~~g~Vy~~~~~~-------~~~~vavK~~~~~~~-~~~~~~~~E~~~l~~l-~h~niv~~~~~~~~~ 600 (833)
.++|.+.+.||+|+||.||+|++.. .+..||||+++.... ...+.+.+|+++++++ +||||+++++++...
T Consensus 68 ~~~y~i~~~LG~G~~g~Vy~a~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hpnIv~~~~~~~~~ 147 (382)
T 3tt0_A 68 RDRLVLGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQD 147 (382)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEEETSSTTCTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSS
T ss_pred hhheEeeeEEecCCCeEEEEEEEccccccccccceEEEEEeeccccCHHHHHHHHHHHHHHHHhcCCchhhhheeeeccC
Confidence 4689999999999999999999743 346899999975432 2346789999999999 899999999997655
Q ss_pred CCCCCceEeEEEEecCCCChhhhhccCCCcc----------ccccCCHHHHHHHHHHHHHHHHHHhhcCCCCceeeCCCC
Q 040925 601 DFKGTDFKAFVFEYMENGSLKDWLHQSDDQV----------EVCKLSLIQRVNIAIDVASAMEYLHHHCQPPMVHGDLKP 670 (833)
Q Consensus 601 ~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~----------~~~~l~~~~~~~i~~qi~~gL~~LH~~~~~~ivH~Dlkp 670 (833)
+ ..++||||+++|+|.+++....... ....+++.+++.++.|++.||+|||+. +|+||||||
T Consensus 148 ~-----~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dlkp 219 (382)
T 3tt0_A 148 G-----PLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDLVSCAYQVARGMEYLASK---KCIHRDLAA 219 (382)
T ss_dssp S-----SCEEEEECCTTCBHHHHHHHTCCSSSSSCCCCCSSCCCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCG
T ss_pred C-----ceEEEEEecCCCcHHHHHHHhcccccccccccccccccccCHHHHHHHHHHHHHHHHHHHhC---CEecCCCCc
Confidence 4 7899999999999999998754210 112589999999999999999999999 999999999
Q ss_pred CCeeecCCCcEEEcccccccccCcccccccccCCCccccccccccccCccccCCCCCCcccccccCCcCCCccccCCccH
Q 040925 671 SNVLLDHDMVAHVCDFGLAKFLSDHQLDTAVKTPSSSIGLKGTVGYVAPEYGMGSEASMTGDIFTGRRPIDAVFNEGHSL 750 (833)
Q Consensus 671 ~NIll~~~~~~kL~DfG~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~s~~~~~~~~~~~g~~l 750 (833)
+||+++.++.+||+|||+|+........ .......||+.|+|||++.+..++.++|||| +|+++
T Consensus 220 ~NIll~~~~~~kL~DFG~a~~~~~~~~~------~~~~~~~~t~~y~aPE~~~~~~~~~~~Diws----------lG~il 283 (382)
T 3tt0_A 220 RNVLVTEDNVMKIADFGLARDIHHIDYY------KKTTNGRLPVKWMAPEALFDRIYTHQSDVWS----------FGVLL 283 (382)
T ss_dssp GGEEECTTCCEEECSCSCCCCSSCCCTT------CCCTTCCCGGGGSCHHHHHSCCCCHHHHHHH----------HHHHH
T ss_pred ceEEEcCCCcEEEcccCccccccccccc------ccccCCCCCcceeCHHHhcCCCCCchhHHHH----------HHHHH
Confidence 9999999999999999999866543211 1122345789999999999999999999999 77788
Q ss_pred HHHHH-HhCCCcccccccccchhhhccccchhhhhhhhchHHHHHHHHHHhhccCCCCCCCCCCHHHHHHHHHHhhhhhh
Q 040925 751 HEFAK-TALPEKVMEIVDPSLLMEVMTNNSMIQEDKRVKTEECLNAIIRTGVLCSMESPFERMDMRDVVAKLCHTRETFL 829 (833)
Q Consensus 751 ~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~i~~~~~ 829 (833)
+++++ +..|+...... .. ...+.... ....+..+++.+.+++.+||+.||++|||++|+++.|+++.....
T Consensus 284 ~ellt~g~~p~~~~~~~--~~-~~~~~~~~-----~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~~~~~~~ 355 (382)
T 3tt0_A 284 WEIFTLGGSPYPGVPVE--EL-FKLLKEGH-----RMDKPSNCTNELYMMMRDCWHAVPSQRPTFKQLVEDLDRIVALTS 355 (382)
T ss_dssp HHHHTTSCCSSTTCCHH--HH-HHHHHTTC-----CCCCCSSCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHSC
T ss_pred HHHHhCCCCCCCCCCHH--HH-HHHHHcCC-----CCCCCccCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHHHh
Confidence 88887 77776422110 11 11111100 011122346678999999999999999999999999999986544
Q ss_pred c
Q 040925 830 G 830 (833)
Q Consensus 830 ~ 830 (833)
.
T Consensus 356 ~ 356 (382)
T 3tt0_A 356 N 356 (382)
T ss_dssp S
T ss_pred c
Confidence 3
No 117
>2i0e_A Protein kinase C-beta II; serine/threonine protein kinase, transferase; HET: TPO SEP PDS; 2.60A {Homo sapiens} PDB: 3iw4_A*
Probab=100.00 E-value=1.4e-38 Score=342.53 Aligned_cols=251 Identities=22% Similarity=0.252 Sum_probs=203.1
Q ss_pred HhcCCccCceeccCcceEEEEEEECCCceEEEEEEeecc---CCcchhHHHHHHHHHhhc-CCCccceEeeEeecCCCCC
Q 040925 529 ATGEFSSSNMIGQGSFGYVYKGTLGEDEMIVAVKVINLK---YKGASRSFVAECEALRNI-RHRNLIKIITICSSTDFKG 604 (833)
Q Consensus 529 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~---~~~~~~~~~~E~~~l~~l-~h~niv~~~~~~~~~~~~~ 604 (833)
..++|++.+.||+|+||.||+|++..+++.||||+++.. .....+.+..|.++++.+ +||+|+++++++...+
T Consensus 18 ~~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~iv~l~~~~~~~~--- 94 (353)
T 2i0e_A 18 KLTDFNFLMVLGKGSFGKVMLSERKGTDELYAVKILKKDVVIQDDDVECTMVEKRVLALPGKPPFLTQLHSCFQTMD--- 94 (353)
T ss_dssp -CTTEEEEEEEEEETTEEEEEEEETTEEEEEEEEEEEHHHHHHTTCHHHHHHHHHHHTCTTCCTTBCCEEEEEECSS---
T ss_pred chHHcEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhcchHHHHHHHHHHHHHhcCCCCEEeeEEEEEEcCC---
Confidence 456899999999999999999999989999999999743 223456788999999988 7999999999976554
Q ss_pred CceEeEEEEecCCCChhhhhccCCCccccccCCHHHHHHHHHHHHHHHHHHhhcCCCCceeeCCCCCCeeecCCCcEEEc
Q 040925 605 TDFKAFVFEYMENGSLKDWLHQSDDQVEVCKLSLIQRVNIAIDVASAMEYLHHHCQPPMVHGDLKPSNVLLDHDMVAHVC 684 (833)
Q Consensus 605 ~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~gL~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kL~ 684 (833)
..|+||||+++|+|.+++...+ .+++..++.++.||+.||+|||+. ||+||||||+||+++.++.+||+
T Consensus 95 --~~~lv~E~~~gg~L~~~l~~~~------~~~~~~~~~~~~qi~~aL~~LH~~---givHrDlkp~NIll~~~g~vkL~ 163 (353)
T 2i0e_A 95 --RLYFVMEYVNGGDLMYHIQQVG------RFKEPHAVFYAAEIAIGLFFLQSK---GIIYRDLKLDNVMLDSEGHIKIA 163 (353)
T ss_dssp --EEEEEEECCCSCBHHHHHHHHS------SCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCCGGGEEECTTSCEEEC
T ss_pred --EEEEEEeCCCCCcHHHHHHhcC------CCCHHHHHHHHHHHHHHHHHHHHC---CEEeccCCHHHEEEcCCCcEEEE
Confidence 8999999999999999998654 689999999999999999999999 99999999999999999999999
Q ss_pred ccccccccCcccccccccCCCccccccccccccCccccCCCCCCcccccccCCcCCCccccCCccHHHHHHHhCCCcccc
Q 040925 685 DFGLAKFLSDHQLDTAVKTPSSSIGLKGTVGYVAPEYGMGSEASMTGDIFTGRRPIDAVFNEGHSLHEFAKTALPEKVME 764 (833)
Q Consensus 685 DfG~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~s~~~~~~~~~~~g~~l~~~~~~~~p~~~~~ 764 (833)
|||+|+...... ......+||+.|+|||++.+..++.++|||| .|+++|+++++..|+....
T Consensus 164 DFG~a~~~~~~~--------~~~~~~~gt~~y~aPE~~~~~~~~~~~Diws----------lG~il~ell~G~~Pf~~~~ 225 (353)
T 2i0e_A 164 DFGMCKENIWDG--------VTTKTFCGTPDYIAPEIIAYQPYGKSVDWWA----------FGVLLYEMLAGQAPFEGED 225 (353)
T ss_dssp CCTTCBCCCCTT--------CCBCCCCSCGGGCCHHHHTTCCBSTHHHHHH----------HHHHHHHHHHSSCSSCCSS
T ss_pred eCCcccccccCC--------cccccccCCccccChhhhcCCCcCCcccccc----------hHHHHHHHHcCCCCCCCCC
Confidence 999998543211 1223457999999999999999999999999 8889999999999875321
Q ss_pred cccccchhhhccccchhhhhhhhchHHHHHHHHHHhhccCCCCCCCCCC-----HHHHHHH
Q 040925 765 IVDPSLLMEVMTNNSMIQEDKRVKTEECLNAIIRTGVLCSMESPFERMD-----MRDVVAK 820 (833)
Q Consensus 765 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt-----~~eil~~ 820 (833)
. ............ ..+...+..+.+++.+||..||++||+ ++|+++.
T Consensus 226 ~--~~~~~~i~~~~~-------~~p~~~s~~~~~li~~lL~~dP~~R~~~~~~~~~~i~~h 277 (353)
T 2i0e_A 226 E--DELFQSIMEHNV-------AYPKSMSKEAVAICKGLMTKHPGKRLGCGPEGERDIKEH 277 (353)
T ss_dssp H--HHHHHHHHHCCC-------CCCTTSCHHHHHHHHHHTCSCTTSCTTCSTTHHHHHHTS
T ss_pred H--HHHHHHHHhCCC-------CCCCCCCHHHHHHHHHHhhcCHHHcCCCCCCCHHHHhcC
Confidence 1 111111111111 112234567889999999999999995 4666553
No 118
>2w4o_A Calcium/calmodulin-dependent protein kinase type IV; calmodulin-binding, nucleotide-binding, serine/threonine-protein kinase, ATP-binding; HET: DKI; 2.17A {Homo sapiens}
Probab=100.00 E-value=2.4e-38 Score=341.64 Aligned_cols=253 Identities=21% Similarity=0.246 Sum_probs=189.7
Q ss_pred HhcCCccCceeccCcceEEEEEEECCCceEEEEEEeeccCCcchhHHHHHHHHHhhcCCCccceEeeEeecCCCCCCceE
Q 040925 529 ATGEFSSSNMIGQGSFGYVYKGTLGEDEMIVAVKVINLKYKGASRSFVAECEALRNIRHRNLIKIITICSSTDFKGTDFK 608 (833)
Q Consensus 529 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~ 608 (833)
..++|++.+.||+|+||.||+|++..+++.||||+++... ..+.+.+|++++++++||||+++++++.... ..
T Consensus 51 ~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~vavK~~~~~~--~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~-----~~ 123 (349)
T 2w4o_A 51 LSDFFEVESELGRGATSIVYRCKQKGTQKPYALKVLKKTV--DKKIVRTEIGVLLRLSHPNIIKLKEIFETPT-----EI 123 (349)
T ss_dssp GGGTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEC------------CHHHHHCCCTTBCCEEEEEECSS-----EE
T ss_pred ccCcEEEeeEEeeCCCEEEEEEEECCCCcEEEEEEeccch--hHHHHHHHHHHHHhCCCCCCcceeeeEecCC-----eE
Confidence 3467999999999999999999999899999999997432 3466889999999999999999999986654 89
Q ss_pred eEEEEecCCCChhhhhccCCCccccccCCHHHHHHHHHHHHHHHHHHhhcCCCCceeeCCCCCCeeecC---CCcEEEcc
Q 040925 609 AFVFEYMENGSLKDWLHQSDDQVEVCKLSLIQRVNIAIDVASAMEYLHHHCQPPMVHGDLKPSNVLLDH---DMVAHVCD 685 (833)
Q Consensus 609 ~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~gL~~LH~~~~~~ivH~Dlkp~NIll~~---~~~~kL~D 685 (833)
++||||+++|+|.+++.... .+++.+++.++.|++.||.|||+. +|+||||||+||+++. ++.+||+|
T Consensus 124 ~lv~e~~~~~~L~~~l~~~~------~~~~~~~~~i~~qi~~~L~~LH~~---~ivH~Dikp~NIll~~~~~~~~~kl~D 194 (349)
T 2w4o_A 124 SLVLELVTGGELFDRIVEKG------YYSERDAADAVKQILEAVAYLHEN---GIVHRDLKPENLLYATPAPDAPLKIAD 194 (349)
T ss_dssp EEEECCCCSCBHHHHHTTCS------SCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEESSSSTTCCEEECC
T ss_pred EEEEEeCCCCCHHHHHHhcC------CCCHHHHHHHHHHHHHHHHHHHHC---CeEecCCCcccEEEecCCCCCCEEEcc
Confidence 99999999999999998654 689999999999999999999999 9999999999999975 88999999
Q ss_pred cccccccCcccccccccCCCccccccccccccCccccCCCCCCcccccccCCcCCCccccCCccHHHHHHHhCCCccccc
Q 040925 686 FGLAKFLSDHQLDTAVKTPSSSIGLKGTVGYVAPEYGMGSEASMTGDIFTGRRPIDAVFNEGHSLHEFAKTALPEKVMEI 765 (833)
Q Consensus 686 fG~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~s~~~~~~~~~~~g~~l~~~~~~~~p~~~~~~ 765 (833)
||+++....... .....||+.|+|||++.+..++.++|||| +|+++++++++..|+.....
T Consensus 195 fg~a~~~~~~~~---------~~~~~gt~~y~aPE~~~~~~~~~~~Diws----------lG~il~ell~g~~pf~~~~~ 255 (349)
T 2w4o_A 195 FGLSKIVEHQVL---------MKTVCGTPGYCAPEILRGCAYGPEVDMWS----------VGIITYILLCGFEPFYDERG 255 (349)
T ss_dssp CC-------------------------CGGGSCHHHHTTCCCCTHHHHHH----------HHHHHHHHHHSSCTTCCTTC
T ss_pred CccccccCcccc---------cccccCCCCccCHHHhcCCCCCcccchHH----------HHHHHHHHHhCCCCCCCCcc
Confidence 999986543211 12346999999999999999999999999 88899999999888752211
Q ss_pred ccccchhhhccccchhhhhhhhchHHHHHHHHHHhhccCCCCCCCCCCHHHHHHH
Q 040925 766 VDPSLLMEVMTNNSMIQEDKRVKTEECLNAIIRTGVLCSMESPFERMDMRDVVAK 820 (833)
Q Consensus 766 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~ 820 (833)
. .............. ......+++..+.+++.+||..||++|||+.|+++.
T Consensus 256 ~-~~~~~~i~~~~~~~---~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~h 306 (349)
T 2w4o_A 256 D-QFMFRRILNCEYYF---ISPWWDEVSLNAKDLVRKLIVLDPKKRLTTFQALQH 306 (349)
T ss_dssp H-HHHHHHHHTTCCCC---CTTTTTTSCHHHHHHHHTTSCSSGGGSCCHHHHHHS
T ss_pred c-HHHHHHHHhCCCcc---CCchhhhCCHHHHHHHHHHccCChhhCcCHHHHhcC
Confidence 1 10111111111100 011112346678899999999999999999999864
No 119
>3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=7.5e-39 Score=347.89 Aligned_cols=266 Identities=24% Similarity=0.438 Sum_probs=197.4
Q ss_pred CCccCceeccCcceEEEEEEECCC---ceEEEEEEeeccC-CcchhHHHHHHHHHhhcCCCccceEeeEeecCCCCCCce
Q 040925 532 EFSSSNMIGQGSFGYVYKGTLGED---EMIVAVKVINLKY-KGASRSFVAECEALRNIRHRNLIKIITICSSTDFKGTDF 607 (833)
Q Consensus 532 ~y~~~~~lg~G~~g~Vy~~~~~~~---~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~ 607 (833)
.|++.+.||+|+||.||+|++..+ +..||||.++... ....+.+.+|+.++++++||||+++++++... .+.
T Consensus 90 ~~~~~~~LG~G~fg~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~----~~~ 165 (373)
T 3c1x_A 90 IVHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRS----EGS 165 (373)
T ss_dssp EEEEEEEEECCSSSEEEEEEEEETTTEEEEEEEEECCSCSCSHHHHHHHHHHTTSTTCCCTTBCCCCEEECCC----SSC
T ss_pred eeecCcEeeeCCCeEEEEEEEECCCCcEEEEEEEEcCCCCCHHHHHHHHHHHHHHHhCCCCCcceEEEEEEcC----CCC
Confidence 467789999999999999987432 3568999986433 23457899999999999999999999987433 246
Q ss_pred EeEEEEecCCCChhhhhccCCCccccccCCHHHHHHHHHHHHHHHHHHhhcCCCCceeeCCCCCCeeecCCCcEEEcccc
Q 040925 608 KAFVFEYMENGSLKDWLHQSDDQVEVCKLSLIQRVNIAIDVASAMEYLHHHCQPPMVHGDLKPSNVLLDHDMVAHVCDFG 687 (833)
Q Consensus 608 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~gL~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kL~DfG 687 (833)
.++||||+++|+|.+++..... .+++.+++.++.|++.||+|||+. +|+||||||+||+++.++.+||+|||
T Consensus 166 ~~lv~e~~~~g~L~~~l~~~~~-----~~~~~~~~~i~~qi~~aL~~LH~~---~ivHrDlkp~NIll~~~~~~kL~DFG 237 (373)
T 3c1x_A 166 PLVVLPYMKHGDLRNFIRNETH-----NPTVKDLIGFGLQVAKGMKFLASK---KFVHRDLAARNCMLDEKFTVKVADFG 237 (373)
T ss_dssp CEEEEECCTTCBHHHHHHCTTC-----CCBHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTCCEEECCC-
T ss_pred eEEEEECCCCCCHHHHHhhccc-----CCCHHHHHHHHHHHHHHHHHHHHC---CEecCccchheEEECCCCCEEEeecc
Confidence 7899999999999999976542 578999999999999999999999 99999999999999999999999999
Q ss_pred cccccCcccccccccCCCccccccccccccCccccCCCCCCcccccccCCcCCCccccCCccHHHHHH-HhCCCcccccc
Q 040925 688 LAKFLSDHQLDTAVKTPSSSIGLKGTVGYVAPEYGMGSEASMTGDIFTGRRPIDAVFNEGHSLHEFAK-TALPEKVMEIV 766 (833)
Q Consensus 688 ~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~s~~~~~~~~~~~g~~l~~~~~-~~~p~~~~~~~ 766 (833)
+++......... ........+|+.|+|||++.+..++.++|||| +|++++++++ +..|+......
T Consensus 238 ~a~~~~~~~~~~----~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwS----------lG~il~ellt~~~~p~~~~~~~ 303 (373)
T 3c1x_A 238 LARDMYDKEFDS----VHNKTGAKLPVKWMALESLQTQKFTTKSDVWS----------FGVLLWELMTRGAPPYPDVNTF 303 (373)
T ss_dssp ------------------------CCGGGSCHHHHHHCCCCHHHHHHH----------HHHHHHHHHTTSCCSCTTSCSS
T ss_pred cccccccccccc----ccccCCCCCcccccChHHhcCCCCCcHHHHHH----------HHHHHHHHHhCcCCCCCCCCHH
Confidence 998664432111 11122345889999999999999999999999 7888888888 44454322211
Q ss_pred cccchhhhccccchhhhhhhhchHHHHHHHHHHhhccCCCCCCCCCCHHHHHHHHHHhhhhhhcC
Q 040925 767 DPSLLMEVMTNNSMIQEDKRVKTEECLNAIIRTGVLCSMESPFERMDMRDVVAKLCHTRETFLGR 831 (833)
Q Consensus 767 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~i~~~~~~~ 831 (833)
+ .......... ...+..++..+.+++.+||+.||++|||++|+++.|+++...+.+.
T Consensus 304 ~--~~~~~~~~~~------~~~p~~~~~~l~~li~~cl~~dp~~RPs~~ell~~L~~i~~~~~~~ 360 (373)
T 3c1x_A 304 D--ITVYLLQGRR------LLQPEYCPDPLYEVMLKCWHPKAEMRPSFSELVSRISAIFSTFIGE 360 (373)
T ss_dssp C--HHHHHHTTCC------CCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHTCCSC
T ss_pred H--HHHHHHcCCC------CCCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHhcccc
Confidence 1 1111111110 1112335667899999999999999999999999999999877654
No 120
>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} SCOP: d.144.1.0
Probab=100.00 E-value=9.7e-39 Score=332.84 Aligned_cols=251 Identities=24% Similarity=0.361 Sum_probs=192.6
Q ss_pred hcCCccCceeccCcceEEEEEEECCCceEEEEEEeeccCC----cchhHHHHHHHHHhhcCCCccceEeeEeecCCCCCC
Q 040925 530 TGEFSSSNMIGQGSFGYVYKGTLGEDEMIVAVKVINLKYK----GASRSFVAECEALRNIRHRNLIKIITICSSTDFKGT 605 (833)
Q Consensus 530 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~----~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~ 605 (833)
.++|++.+.||+|+||.||+|++. ++.||||+++.... ...+.+.+|+++++.++||||+++++++...+
T Consensus 6 ~~~~~~~~~lg~G~~g~V~~~~~~--~~~vavK~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~---- 79 (271)
T 3dtc_A 6 FAELTLEEIIGIGGFGKVYRAFWI--GDEVAVKAARHDPDEDISQTIENVRQEAKLFAMLKHPNIIALRGVCLKEP---- 79 (271)
T ss_dssp TTSEEEEEEEEEETTEEEEEEEET--TEEEEEEEC----------CHHHHHHHHHHHHHCCCTTBCCEEEEECCC-----
T ss_pred hhheeeeeeeccCCCeEEEEEEEc--CCeEEEEEEecCCcccHHHHHHHHHHHHHHHHhcCCCCEeeEEEEEecCC----
Confidence 468999999999999999999984 78899999864422 23467899999999999999999999976544
Q ss_pred ceEeEEEEecCCCChhhhhccCCCccccccCCHHHHHHHHHHHHHHHHHHhhcCCCC---ceeeCCCCCCeeecC-----
Q 040925 606 DFKAFVFEYMENGSLKDWLHQSDDQVEVCKLSLIQRVNIAIDVASAMEYLHHHCQPP---MVHGDLKPSNVLLDH----- 677 (833)
Q Consensus 606 ~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~gL~~LH~~~~~~---ivH~Dlkp~NIll~~----- 677 (833)
..++||||+++++|.+++... .+++..++.++.|++.||+|||+. + |+||||||+||+++.
T Consensus 80 -~~~lv~e~~~~~~L~~~~~~~-------~~~~~~~~~i~~~l~~~l~~lH~~---~~~~i~H~dikp~Nil~~~~~~~~ 148 (271)
T 3dtc_A 80 -NLCLVMEFARGGPLNRVLSGK-------RIPPDILVNWAVQIARGMNYLHDE---AIVPIIHRDLKSSNILILQKVENG 148 (271)
T ss_dssp --CEEEEECCTTEEHHHHHTSS-------CCCHHHHHHHHHHHHHHHHHHHHS---SSSCCCCSCCSGGGEEESSCCSSS
T ss_pred -ceEEEEEcCCCCCHHHHhhcC-------CCCHHHHHHHHHHHHHHHHHHHhC---CCCceeecCCchHHEEEecccccc
Confidence 789999999999999999643 689999999999999999999999 7 999999999999986
Q ss_pred ---CCcEEEcccccccccCcccccccccCCCccccccccccccCccccCCCCCCcccccccCCcCCCccccCCccHHHHH
Q 040925 678 ---DMVAHVCDFGLAKFLSDHQLDTAVKTPSSSIGLKGTVGYVAPEYGMGSEASMTGDIFTGRRPIDAVFNEGHSLHEFA 754 (833)
Q Consensus 678 ---~~~~kL~DfG~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~s~~~~~~~~~~~g~~l~~~~ 754 (833)
++.+||+|||+++....... ....||+.|+|||++.+..++.++|||| .|+++++++
T Consensus 149 ~~~~~~~kl~Dfg~~~~~~~~~~----------~~~~~~~~y~aPE~~~~~~~~~~~Di~s----------lG~~l~~l~ 208 (271)
T 3dtc_A 149 DLSNKILKITDFGLAREWHRTTK----------MSAAGAYAWMAPEVIRASMFSKGSDVWS----------YGVLLWELL 208 (271)
T ss_dssp CCSSCCEEECCCCC-----------------------CCGGGSCHHHHHHCCCSHHHHHHH----------HHHHHHHHH
T ss_pred cccCcceEEccCCcccccccccc----------cCCCCccceeCHHHhccCCCCchhhHHH----------HHHHHHHHH
Confidence 67899999999986544221 1245999999999999889999999999 888999999
Q ss_pred HHhCCCcccccccccchhhhccccchhhhhhhhchHHHHHHHHHHhhccCCCCCCCCCCHHHHHHHHHHh
Q 040925 755 KTALPEKVMEIVDPSLLMEVMTNNSMIQEDKRVKTEECLNAIIRTGVLCSMESPFERMDMRDVVAKLCHT 824 (833)
Q Consensus 755 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~i 824 (833)
++..|+....... .......... ....+..+++.+.+++.+||+.||++|||++|++++|+++
T Consensus 209 ~g~~p~~~~~~~~--~~~~~~~~~~-----~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~e~l~~L~~l 271 (271)
T 3dtc_A 209 TGEVPFRGIDGLA--VAYGVAMNKL-----ALPIPSTCPEPFAKLMEDCWNPDPHSRPSFTNILDQLTTI 271 (271)
T ss_dssp HCCCTTTTSCHHH--HHHHHHTSCC-----CCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHC-
T ss_pred hCCCCCCCCCHHH--HHHhhhcCCC-----CCCCCcccCHHHHHHHHHHhcCCcccCcCHHHHHHHHhcC
Confidence 9998875322111 1111111100 0111233456789999999999999999999999999864
No 121
>4hgt_A Casein kinase I isoform delta; CK1D, inhibitor, transferase-transferase inhibitor C; HET: 15G; 1.80A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 3uzp_A* 4hnf_A* 1cki_A 1ckj_A 4hni_A* 4hok_A
Probab=100.00 E-value=3.4e-38 Score=333.38 Aligned_cols=273 Identities=23% Similarity=0.289 Sum_probs=208.4
Q ss_pred HhcCCccCceeccCcceEEEEEEECCCceEEEEEEeeccCCcchhHHHHHHHHHhhcCCCccceEeeEeecCCCCCCceE
Q 040925 529 ATGEFSSSNMIGQGSFGYVYKGTLGEDEMIVAVKVINLKYKGASRSFVAECEALRNIRHRNLIKIITICSSTDFKGTDFK 608 (833)
Q Consensus 529 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~ 608 (833)
..++|++.+.||+|+||.||+|++..+++.||||++.... ..+.+.+|+++++.++|++++..++++... ....
T Consensus 7 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~--~~~~~~~e~~~l~~l~~~~~i~~~~~~~~~----~~~~ 80 (296)
T 4hgt_A 7 VGNRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKT--KHPQLHIESKIYKMMQGGVGIPTIRWCGAE----GDYN 80 (296)
T ss_dssp ----CEEEEEEEECSSSEEEEEEETTTTEEEEEEEEEC-----CCCHHHHHHHHHHHTTSTTCCCEEEEEEE----TTEE
T ss_pred cCCceEEeeeecCCCCeEEEEEEEcCCCceEEEEeecccc--cchHHHHHHHHHHHhcCCCCCCeeeeecCC----CCce
Confidence 4578999999999999999999998899999999875432 335688999999999988888777776432 3478
Q ss_pred eEEEEecCCCChhhhhccCCCccccccCCHHHHHHHHHHHHHHHHHHhhcCCCCceeeCCCCCCeee---cCCCcEEEcc
Q 040925 609 AFVFEYMENGSLKDWLHQSDDQVEVCKLSLIQRVNIAIDVASAMEYLHHHCQPPMVHGDLKPSNVLL---DHDMVAHVCD 685 (833)
Q Consensus 609 ~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~gL~~LH~~~~~~ivH~Dlkp~NIll---~~~~~~kL~D 685 (833)
++||||+ +|+|.+++..... .+++.+++.++.|++.||+|||+. +|+||||||+||++ +.++.+||+|
T Consensus 81 ~lv~e~~-~~~L~~~~~~~~~-----~~~~~~~~~i~~qi~~~l~~LH~~---~ivH~Dlkp~NIl~~~~~~~~~~kL~D 151 (296)
T 4hgt_A 81 VMVMELL-GPSLEDLFNFCSR-----KFSLKTVLLLADQMISRIEYIHSK---NFIHRDVKPDNFLMGLGKKGNLVYIID 151 (296)
T ss_dssp EEEEECC-CCBHHHHHHHTTS-----CCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECCGGGTTCEEECC
T ss_pred EEEEEcc-CCCHHHHHHHhcC-----CCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHeeeeccCCCCeEEEec
Confidence 9999999 8999999985432 689999999999999999999999 99999999999999 7889999999
Q ss_pred cccccccCcccccccccCCCccccccccccccCccccCCCCCCcccccccCCcCCCccccCCccHHHHHHHhCCCccccc
Q 040925 686 FGLAKFLSDHQLDTAVKTPSSSIGLKGTVGYVAPEYGMGSEASMTGDIFTGRRPIDAVFNEGHSLHEFAKTALPEKVMEI 765 (833)
Q Consensus 686 fG~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~s~~~~~~~~~~~g~~l~~~~~~~~p~~~~~~ 765 (833)
||+++........... .........||+.|+|||++.+..++.++|||| +|+++++++++..|+.....
T Consensus 152 fg~a~~~~~~~~~~~~-~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~s----------lG~il~~l~~g~~pf~~~~~ 220 (296)
T 4hgt_A 152 FGLAKKYRDARTHQHI-PYRENKNLTGTARYASINTHLGIEQSRRDDLES----------LGYVLMYFNLGSLPWQGLKA 220 (296)
T ss_dssp CTTCEECBCTTTCCBC-CCCCSCCCCSCGGGCCHHHHTTCCCCHHHHHHH----------HHHHHHHHHHSSCTTSSCCC
T ss_pred CccceeccCcccCccC-CCCcccccCCCccccchHHhcCCCCCchhHHHH----------HHHHHHHHhcCCCCCcccch
Confidence 9999876553321111 111223467999999999999999999999999 88899999999999863322
Q ss_pred ccccchhhhccccchhhhhhhhchHHHHHHHHHHhhccCCCCCCCCCCHHHHHHHHHHhhhhh
Q 040925 766 VDPSLLMEVMTNNSMIQEDKRVKTEECLNAIIRTGVLCSMESPFERMDMRDVVAKLCHTRETF 828 (833)
Q Consensus 766 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~i~~~~ 828 (833)
.+............. ..........+++.+.+++.+||+.||++|||++++++.|+++.+..
T Consensus 221 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rpt~~~l~~~l~~~~~~~ 282 (296)
T 4hgt_A 221 ATKRQKYERISEKKM-STPIEVLCKGYPSEFATYLNFCRSLRFDDKPDYSYLRQLFRNLFHRQ 282 (296)
T ss_dssp SSSSSHHHHHHHHHH-HSCHHHHTTTSCHHHHHHHHHHHTSCTTCCCCHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhcccc-cchhhhhhccCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHh
Confidence 211111111100000 00001111234678999999999999999999999999999998753
No 122
>3ork_A Serine/threonine protein kinase; structural genomics, TB structural genomics consortium, TBSG domain, signal transduction; HET: AGS; 1.60A {Mycobacterium tuberculosis} PDB: 3ori_A* 3orl_A* 3oro_A* 3orp_A* 3ort_A* 3f61_A* 1mru_A* 3f69_A* 3orm_A* 1o6y_A* 2fum_A*
Probab=100.00 E-value=5.3e-39 Score=341.74 Aligned_cols=266 Identities=18% Similarity=0.310 Sum_probs=199.3
Q ss_pred hcCCccCceeccCcceEEEEEEECCCceEEEEEEeeccCCc---chhHHHHHHHHHhhcCCCccceEeeEeecCCCCCCc
Q 040925 530 TGEFSSSNMIGQGSFGYVYKGTLGEDEMIVAVKVINLKYKG---ASRSFVAECEALRNIRHRNLIKIITICSSTDFKGTD 606 (833)
Q Consensus 530 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~---~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~ 606 (833)
.++|++.+.||+|+||.||+|++..+++.||||+++..... ....+.+|++++++++||||+++++++.... ....
T Consensus 11 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~-~~~~ 89 (311)
T 3ork_A 11 SDRYELGEILGFGGMSEVHLARDLRDHRDVAVKVLRADLARDPSFYLRFRREAQNAAALNHPAIVAVYDTGEAET-PAGP 89 (311)
T ss_dssp TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECTTTTTSHHHHHHHHHHHTTCCCCCCTTBCCEEEEEEEEE-TTEE
T ss_pred cCcEEEEEEEccCCCEEEEEEEECCCCceEEEEEeCccccCCHHHHHHHHHHHHHHHcCCCCCcceEEEeeeccC-CCCc
Confidence 35899999999999999999999989999999999754322 2357889999999999999999999976543 1223
Q ss_pred eEeEEEEecCCCChhhhhccCCCccccccCCHHHHHHHHHHHHHHHHHHhhcCCCCceeeCCCCCCeeecCCCcEEEccc
Q 040925 607 FKAFVFEYMENGSLKDWLHQSDDQVEVCKLSLIQRVNIAIDVASAMEYLHHHCQPPMVHGDLKPSNVLLDHDMVAHVCDF 686 (833)
Q Consensus 607 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~gL~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kL~Df 686 (833)
..|+||||+++|+|.+++.... .+++.+++.++.|++.||+|||+. +|+||||||+||+++.++.+||+||
T Consensus 90 ~~~lv~e~~~g~~L~~~l~~~~------~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~dlkp~Nil~~~~~~~kl~Df 160 (311)
T 3ork_A 90 LPYIVMEYVDGVTLRDIVHTEG------PMTPKRAIEVIADACQALNFSHQN---GIIHRDVKPANIMISATNAVKVMDF 160 (311)
T ss_dssp EEEEEEECCCEEEHHHHHHHHC------SCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEEETTSCEEECCC
T ss_pred ccEEEEecCCCCCHHHHHHhcC------CCCHHHHHHHHHHHHHHHHHHHHC---CCCcCCCCHHHEEEcCCCCEEEeec
Confidence 4699999999999999997654 689999999999999999999999 9999999999999999999999999
Q ss_pred ccccccCcccccccccCCCccccccccccccCccccCCCCCCcccccccCCcCCCccccCCccHHHHHHHhCCCcccccc
Q 040925 687 GLAKFLSDHQLDTAVKTPSSSIGLKGTVGYVAPEYGMGSEASMTGDIFTGRRPIDAVFNEGHSLHEFAKTALPEKVMEIV 766 (833)
Q Consensus 687 G~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~s~~~~~~~~~~~g~~l~~~~~~~~p~~~~~~~ 766 (833)
|+++........ ........||+.|+|||++.+..++.++|||| .|+++++++++..|+......
T Consensus 161 g~a~~~~~~~~~-----~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~s----------lG~~l~~ll~g~~pf~~~~~~ 225 (311)
T 3ork_A 161 GIARAIADSGNS-----VTQTAAVIGTAQYLSPEQARGDSVDARSDVYS----------LGCVLYEVLTGEPPFTGDSPV 225 (311)
T ss_dssp SCC-----------------------CCTTCCHHHHHTCCCCHHHHHHH----------HHHHHHHHHHSSCSCCCSSHH
T ss_pred cCcccccccccc-----cccccccCcCcccCCHHHhcCCCCCchHhHHH----------HHHHHHHHHhCCCCCCCCChH
Confidence 999876543211 11122356999999999999999999999999 888999999999887532211
Q ss_pred cccchhhhccccchhhhhhhhchHHHHHHHHHHhhccCCCCCCCCCCHHHHH-HHHHHhh
Q 040925 767 DPSLLMEVMTNNSMIQEDKRVKTEECLNAIIRTGVLCSMESPFERMDMRDVV-AKLCHTR 825 (833)
Q Consensus 767 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil-~~L~~i~ 825 (833)
+ ............ .......++..+.+++.+||+.||++||++.+++ ..+..+.
T Consensus 226 ~--~~~~~~~~~~~~---~~~~~~~~~~~l~~li~~~l~~dP~~R~~~~~~l~~~l~~~~ 280 (311)
T 3ork_A 226 S--VAYQHVREDPIP---PSARHEGLSADLDAVVLKALAKNPENRYQTAAEMRADLVRVH 280 (311)
T ss_dssp H--HHHHHHHCCCCC---HHHHSTTCCHHHHHHHHHHTCSSGGGSCSSHHHHHHHHHHHH
T ss_pred H--HHHHHhcCCCCC---cccccCCCCHHHHHHHHHHHhcCHhhChhhHHHHHHHHHHHh
Confidence 1 111111111100 0111123466789999999999999999765554 4455543
No 123
>3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 4deg_A* 4deh_A* 4dei_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 4aoi_A* 4ap7_A* 3q6w_A* ...
Probab=100.00 E-value=1.8e-38 Score=335.73 Aligned_cols=268 Identities=24% Similarity=0.430 Sum_probs=206.7
Q ss_pred hcCCccCceeccCcceEEEEEEECCC---ceEEEEEEeeccCC-cchhHHHHHHHHHhhcCCCccceEeeEeecCCCCCC
Q 040925 530 TGEFSSSNMIGQGSFGYVYKGTLGED---EMIVAVKVINLKYK-GASRSFVAECEALRNIRHRNLIKIITICSSTDFKGT 605 (833)
Q Consensus 530 ~~~y~~~~~lg~G~~g~Vy~~~~~~~---~~~vavK~~~~~~~-~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~ 605 (833)
..+|++.+.||+|+||.||+|++..+ ...||+|.++.... ...+.+.+|+.++++++||||+++++++... .
T Consensus 24 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~avk~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~----~ 99 (298)
T 3f66_A 24 SLIVHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRS----E 99 (298)
T ss_dssp GEEEEEEEEEEEETTEEEEEEEEC-----CEEEEEEEETTCCSHHHHHHHHHHHHHHHTCCCTTBCCCCEEECCS----S
T ss_pred ceehhhcceeeecCCceEEEEEEecCCCceeEEEEEecccCCCHHHHHHHHHHHHHHHhCCCCCEeeeeeEEEcC----C
Confidence 34688999999999999999997533 34689999864332 2346789999999999999999999987433 3
Q ss_pred ceEeEEEEecCCCChhhhhccCCCccccccCCHHHHHHHHHHHHHHHHHHhhcCCCCceeeCCCCCCeeecCCCcEEEcc
Q 040925 606 DFKAFVFEYMENGSLKDWLHQSDDQVEVCKLSLIQRVNIAIDVASAMEYLHHHCQPPMVHGDLKPSNVLLDHDMVAHVCD 685 (833)
Q Consensus 606 ~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~gL~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kL~D 685 (833)
+..++||||+++|+|.+++..... .+++..++.++.|++.||+|||+. +|+||||||+||+++.++.+||+|
T Consensus 100 ~~~~~v~e~~~~~~L~~~l~~~~~-----~~~~~~~~~i~~ql~~~l~~lH~~---~i~H~dikp~Nil~~~~~~~kl~D 171 (298)
T 3f66_A 100 GSPLVVLPYMKHGDLRNFIRNETH-----NPTVKDLIGFGLQVAKGMKYLASK---KFVHRDLAARNCMLDEKFTVKVAD 171 (298)
T ss_dssp SCCEEEEECCTTCBHHHHHHCTTC-----CCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECTTCCEEECS
T ss_pred CceEEEEeCCCCCCHHHHHHhccc-----CCCHHHHHHHHHHHHHHHHHHHhC---CccCCCCchheEEECCCCCEEECc
Confidence 478899999999999999976432 589999999999999999999999 999999999999999999999999
Q ss_pred cccccccCcccccccccCCCccccccccccccCccccCCCCCCcccccccCCcCCCccccCCccHHHHHHHhC-CCcccc
Q 040925 686 FGLAKFLSDHQLDTAVKTPSSSIGLKGTVGYVAPEYGMGSEASMTGDIFTGRRPIDAVFNEGHSLHEFAKTAL-PEKVME 764 (833)
Q Consensus 686 fG~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~s~~~~~~~~~~~g~~l~~~~~~~~-p~~~~~ 764 (833)
||+++......... ........||+.|+|||++.+..++.++|||| .|+++++++++.. |+....
T Consensus 172 fg~a~~~~~~~~~~----~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~s----------lG~il~~l~~~~~~~~~~~~ 237 (298)
T 3f66_A 172 FGLARDMYDKEYYS----VHNKTGAKLPVKWMALESLQTQKFTTKSDVWS----------FGVLLWELMTRGAPPYPDVN 237 (298)
T ss_dssp CGGGCCCSCGGGCB----C-----CCBCGGGSCHHHHHHCCCCHHHHHHH----------HHHHHHHHHTTSCCSSTTSC
T ss_pred ccccccccccchhc----cccccCCCCCccccChHHhcCCCCChHHHHHH----------HHHHHHHHHhCCCCCCccCC
Confidence 99998765433211 11223456889999999999889999999999 7788888888444 333221
Q ss_pred cccccchhhhccccchhhhhhhhchHHHHHHHHHHhhccCCCCCCCCCCHHHHHHHHHHhhhhhhcC
Q 040925 765 IVDPSLLMEVMTNNSMIQEDKRVKTEECLNAIIRTGVLCSMESPFERMDMRDVVAKLCHTRETFLGR 831 (833)
Q Consensus 765 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~i~~~~~~~ 831 (833)
..+ ......... ....+..+++.+.+++.+||+.||++|||++|+++.|+++...+.++
T Consensus 238 ~~~--~~~~~~~~~------~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~ell~~L~~~~~~~~~~ 296 (298)
T 3f66_A 238 TFD--ITVYLLQGR------RLLQPEYCPDPLYEVMLKCWHPKAEMRPSFSELVSRISAIFSTFIGE 296 (298)
T ss_dssp TTT--HHHHHHTTC------CCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHTSCCS
T ss_pred HHH--HHHHHhcCC------CCCCCccCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHhhccC
Confidence 111 111111111 01112234567899999999999999999999999999999887765
No 124
>3uc3_A Serine/threonine-protein kinase SRK2I; SNRK2, ABA signaling, transferase; 1.90A {Arabidopsis thaliana} PDB: 3zut_A 3zuu_A 3uc4_A 3ujg_A 3udb_A
Probab=100.00 E-value=2.5e-38 Score=342.90 Aligned_cols=252 Identities=21% Similarity=0.274 Sum_probs=193.6
Q ss_pred hcCCccCceeccCcceEEEEEEECCCceEEEEEEeeccCCcchhHHHHHHHHHhhcCCCccceEeeEeecCCCCCCceEe
Q 040925 530 TGEFSSSNMIGQGSFGYVYKGTLGEDEMIVAVKVINLKYKGASRSFVAECEALRNIRHRNLIKIITICSSTDFKGTDFKA 609 (833)
Q Consensus 530 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~~ 609 (833)
.++|++.+.||+|+||.||+|++..+++.||||++.... ...+.+.+|+.++++++||||+++++++.... ..+
T Consensus 19 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~-----~~~ 92 (361)
T 3uc3_A 19 SDRYDFVKDIGSGNFGVARLMRDKLTKELVAVKYIERGA-AIDENVQREIINHRSLRHPNIVRFKEVILTPT-----HLA 92 (361)
T ss_dssp TTTEEEEEEESSSTTSSEEEEEETTTCCEEEEEEEESST-TSCHHHHHHHHHHHHCCCTTBCCEEEEEECSS-----EEE
T ss_pred CCcEEEEEEeccCCCEEEEEEEECCCCcEEEEEEEecCc-cccHHHHHHHHHHHhCCCCCCCcEEEEEeeCC-----EEE
Confidence 468999999999999999999999999999999997442 33467889999999999999999999976654 899
Q ss_pred EEEEecCCCChhhhhccCCCccccccCCHHHHHHHHHHHHHHHHHHhhcCCCCceeeCCCCCCeeecCCCc--EEEcccc
Q 040925 610 FVFEYMENGSLKDWLHQSDDQVEVCKLSLIQRVNIAIDVASAMEYLHHHCQPPMVHGDLKPSNVLLDHDMV--AHVCDFG 687 (833)
Q Consensus 610 lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~gL~~LH~~~~~~ivH~Dlkp~NIll~~~~~--~kL~DfG 687 (833)
+||||+++|+|.+++...+ .+++..++.++.|++.||+|||+. ||+||||||+||+++.++. +||+|||
T Consensus 93 lv~e~~~~~~L~~~l~~~~------~~~~~~~~~i~~ql~~~L~~LH~~---~ivH~Dlkp~Nill~~~~~~~~kl~Dfg 163 (361)
T 3uc3_A 93 IIMEYASGGELYERICNAG------RFSEDEARFFFQQLLSGVSYCHSM---QICHRDLKLENTLLDGSPAPRLKICDFG 163 (361)
T ss_dssp EEEECCCSCBHHHHHHHHS------SCCHHHHHHHHHHHHHHHHHHHHT---TCCSCCCCGGGEEECSSSSCCEEECCCC
T ss_pred EEEEeCCCCCHHHHHHhcC------CCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEEEcCCCCceEEEeecC
Confidence 9999999999999997644 689999999999999999999999 9999999999999987765 9999999
Q ss_pred cccccCcccccccccCCCccccccccccccCccccCCCCCCcc-cccccCCcCCCccccCCccHHHHHHHhCCCcccccc
Q 040925 688 LAKFLSDHQLDTAVKTPSSSIGLKGTVGYVAPEYGMGSEASMT-GDIFTGRRPIDAVFNEGHSLHEFAKTALPEKVMEIV 766 (833)
Q Consensus 688 ~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~-~Di~s~~~~~~~~~~~g~~l~~~~~~~~p~~~~~~~ 766 (833)
+|+...... ......||+.|+|||++.+..++.+ +|||| .|+++++++++..|+......
T Consensus 164 ~a~~~~~~~---------~~~~~~gt~~y~aPE~~~~~~~~~~~~Diws----------lG~il~ell~g~~Pf~~~~~~ 224 (361)
T 3uc3_A 164 YSKSSVLHS---------QPKSTVGTPAYIAPEVLLRQEYDGKIADVWS----------CGVTLYVMLVGAYPFEDPEEP 224 (361)
T ss_dssp CC------------------------CTTSCHHHHHCSSCCHHHHHHHH----------HHHHHHHHHHSSCSCC----C
T ss_pred ccccccccC---------CCCCCcCCCCcCChhhhcCCCCCCCeeeeeh----------hHHHHHHHHhCCCCCCCCccH
Confidence 997433211 1123469999999999988887665 89999 888999999999987632211
Q ss_pred cc--cchhhhccccchhhhhhhhchHHHHHHHHHHhhccCCCCCCCCCCHHHHHHH
Q 040925 767 DP--SLLMEVMTNNSMIQEDKRVKTEECLNAIIRTGVLCSMESPFERMDMRDVVAK 820 (833)
Q Consensus 767 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~ 820 (833)
.. ............. .....+++.+.+++.+||+.||++|||++|+++.
T Consensus 225 ~~~~~~~~~~~~~~~~~-----~~~~~~s~~~~~li~~~L~~dP~~Rps~~ell~h 275 (361)
T 3uc3_A 225 RDYRKTIQRILSVKYSI-----PDDIRISPECCHLISRIFVADPATRISIPEIKTH 275 (361)
T ss_dssp CCHHHHHHHHHTTCCCC-----CTTSCCCHHHHHHHHHHSCSCTTTSCCHHHHHTS
T ss_pred HHHHHHHHHHhcCCCCC-----CCcCCCCHHHHHHHHHHccCChhHCcCHHHHHhC
Confidence 10 0001111111100 0011234678899999999999999999999875
No 125
>3v8s_A RHO-associated protein kinase 1; dimerization, myosin, transferase, inhibitor, transf transferase inhibitor complex; HET: 0HD; 2.29A {Homo sapiens} PDB: 3twj_A* 3tv7_A* 2etr_A* 2esm_A* 2eto_A* 2etk_A* 3d9v_A* 3ncz_A* 3ndm_A* 2v55_A* 2f2u_A* 2h9v_A*
Probab=100.00 E-value=4.4e-39 Score=352.49 Aligned_cols=261 Identities=17% Similarity=0.224 Sum_probs=207.5
Q ss_pred hHHHHHHhcCCccCceeccCcceEEEEEEECCCceEEEEEEeecc---CCcchhHHHHHHHHHhhcCCCccceEeeEeec
Q 040925 523 YAELSKATGEFSSSNMIGQGSFGYVYKGTLGEDEMIVAVKVINLK---YKGASRSFVAECEALRNIRHRNLIKIITICSS 599 (833)
Q Consensus 523 ~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~---~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~ 599 (833)
..++....++|++.+.||+|+||.||+|+++.+++.||+|+++.. .....+.+.+|+.+++.++||||+++++++.+
T Consensus 61 ~~~~~~~~~~y~~~~~LG~G~fG~V~~~~~~~~~~~~AiK~~~k~~~~~~~~~~~~~~E~~il~~l~hp~Iv~l~~~~~~ 140 (410)
T 3v8s_A 61 IRDLRMKAEDYEVVKVIGRGAFGEVQLVRHKSTRKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFANSPWVVQLFYAFQD 140 (410)
T ss_dssp HHHHSCCGGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTCCCSTHHHHHHHHHHCCCTTBCCEEEEEEC
T ss_pred HHhcccCccccEEEEEEEcCCCEEEEEEEECCCCcEEEEEEEehhhhhhhHHHHHHHHHHHHHHhCCCCCCCeEEEEEEE
Confidence 345555678999999999999999999999999999999999642 22334568899999999999999999999766
Q ss_pred CCCCCCceEeEEEEecCCCChhhhhccCCCccccccCCHHHHHHHHHHHHHHHHHHhhcCCCCceeeCCCCCCeeecCCC
Q 040925 600 TDFKGTDFKAFVFEYMENGSLKDWLHQSDDQVEVCKLSLIQRVNIAIDVASAMEYLHHHCQPPMVHGDLKPSNVLLDHDM 679 (833)
Q Consensus 600 ~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~gL~~LH~~~~~~ivH~Dlkp~NIll~~~~ 679 (833)
.. ..|+||||+++|+|.+++... .+++..++.++.|++.||+|||+. +|+||||||+||+++.++
T Consensus 141 ~~-----~~~lV~E~~~gg~L~~~l~~~-------~~~e~~~~~~~~qi~~aL~~LH~~---givHrDLKp~NILl~~~g 205 (410)
T 3v8s_A 141 DR-----YLYMVMEYMPGGDLVNLMSNY-------DVPEKWARFYTAEVVLALDAIHSM---GFIHRDVKPDNMLLDKSG 205 (410)
T ss_dssp SS-----EEEEEECCCTTEEHHHHHHHC-------CCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTS
T ss_pred CC-----EEEEEEeCCCCCcHHHHHHcC-------CCCHHHHHHHHHHHHHHHHHHHHC---CeEeccCCHHHeeECCCC
Confidence 54 899999999999999999753 589999999999999999999999 999999999999999999
Q ss_pred cEEEcccccccccCcccccccccCCCccccccccccccCccccCCCC----CCcccccccCCcCCCccccCCccHHHHHH
Q 040925 680 VAHVCDFGLAKFLSDHQLDTAVKTPSSSIGLKGTVGYVAPEYGMGSE----ASMTGDIFTGRRPIDAVFNEGHSLHEFAK 755 (833)
Q Consensus 680 ~~kL~DfG~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~----~~~~~Di~s~~~~~~~~~~~g~~l~~~~~ 755 (833)
.+||+|||+|+........ .....+||+.|+|||++.+.. ++.++|||| .|+++|++++
T Consensus 206 ~ikL~DFG~a~~~~~~~~~-------~~~~~~gt~~Y~APE~l~~~~~~~~~~~~~DiwS----------lGvilyell~ 268 (410)
T 3v8s_A 206 HLKLADFGTCMKMNKEGMV-------RCDTAVGTPDYISPEVLKSQGGDGYYGRECDWWS----------VGVFLYEMLV 268 (410)
T ss_dssp CEEECCCTTCEECCTTSEE-------ECCSCCSCGGGCCHHHHHTTTTTCEEETHHHHHH----------HHHHHHHHHH
T ss_pred CEEEeccceeEeeccCCcc-------cccCCcCCccccCHHHhhccCCCcCCCCcceEec----------chHHHHHHHh
Confidence 9999999999876543211 122357999999999987665 889999999 8899999999
Q ss_pred HhCCCcccccccccchhhhccccchhhhhhhhchHHHHHHHHHHhhccCCCCCCC--CCCHHHHHHH
Q 040925 756 TALPEKVMEIVDPSLLMEVMTNNSMIQEDKRVKTEECLNAIIRTGVLCSMESPFE--RMDMRDVVAK 820 (833)
Q Consensus 756 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~--RPt~~eil~~ 820 (833)
+..|+...... ............ ...+....+++.+.+++.+||..+|.+ ||+++||+++
T Consensus 269 G~~Pf~~~~~~--~~~~~i~~~~~~---~~~p~~~~~s~~~~~li~~lL~~~~~rlgR~~~~ei~~H 330 (410)
T 3v8s_A 269 GDTPFYADSLV--GTYSKIMNHKNS---LTFPDDNDISKEAKNLICAFLTDREVRLGRNGVEEIKRH 330 (410)
T ss_dssp SSCTTCCSSHH--HHHHHHHTHHHH---CCCCTTCCCCHHHHHHHHHHSSCGGGCTTSSCHHHHHTS
T ss_pred CCCCCCCCChh--hHHHHHHhcccc---ccCCCcccccHHHHHHHHHHccChhhhCCCCCHHHHhcC
Confidence 99997632211 111111110000 000111124567889999999999988 9999999875
No 126
>3niz_A Rhodanese family protein; structural genomics, structural genomics consortium, SGC, phosphotransferase, cyclin dependent kinase; HET: ADP; 2.40A {Cryptosporidium parvum} SCOP: d.144.1.7 PDB: 2qkr_A*
Probab=100.00 E-value=3.4e-38 Score=335.12 Aligned_cols=258 Identities=24% Similarity=0.299 Sum_probs=196.1
Q ss_pred hcCCccCceeccCcceEEEEEEECCCceEEEEEEeeccCC--cchhHHHHHHHHHhhcCCCccceEeeEeecCCCCCCce
Q 040925 530 TGEFSSSNMIGQGSFGYVYKGTLGEDEMIVAVKVINLKYK--GASRSFVAECEALRNIRHRNLIKIITICSSTDFKGTDF 607 (833)
Q Consensus 530 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~--~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~ 607 (833)
.++|++.+.||+|+||.||+|++. +++.||+|+++.... ...+.+.+|++++++++||||+++++++.... .
T Consensus 20 ~~~y~~~~~lG~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~-----~ 93 (311)
T 3niz_A 20 MEKYQKLEKVGEGTYGVVYKAKDS-QGRIVALKRIRLDAEDEGIPSTAIREISLLKELHHPNIVSLIDVIHSER-----C 93 (311)
T ss_dssp SCEEEEEEEEEECSSCEEEEEEET-TSCEEEEEEEC------CHHHHHHHHHHHHHHCCCTTBCCEEEEECCSS-----C
T ss_pred HhhhHhhhhccCCCCeEEEEEEEC-CCCEEEEEEEecccccchhhHHHHHHHHHHHHcCCCCEeeeeeEEccCC-----E
Confidence 468999999999999999999996 689999999974422 23467889999999999999999999976544 8
Q ss_pred EeEEEEecCCCChhhhhccCCCccccccCCHHHHHHHHHHHHHHHHHHhhcCCCCceeeCCCCCCeeecCCCcEEEcccc
Q 040925 608 KAFVFEYMENGSLKDWLHQSDDQVEVCKLSLIQRVNIAIDVASAMEYLHHHCQPPMVHGDLKPSNVLLDHDMVAHVCDFG 687 (833)
Q Consensus 608 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~gL~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kL~DfG 687 (833)
.++||||+++ +|.+++..... .+++.+++.++.|++.||+|||+. ||+||||||+||+++.++.+||+|||
T Consensus 94 ~~lv~e~~~~-~l~~~~~~~~~-----~~~~~~~~~~~~qi~~~l~~LH~~---~ivH~Dikp~NIl~~~~~~~kl~Dfg 164 (311)
T 3niz_A 94 LTLVFEFMEK-DLKKVLDENKT-----GLQDSQIKIYLYQLLRGVAHCHQH---RILHRDLKPQNLLINSDGALKLADFG 164 (311)
T ss_dssp EEEEEECCSE-EHHHHHHTCTT-----CCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTCCEEECCCT
T ss_pred EEEEEcCCCC-CHHHHHHhccC-----CCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCchHhEEECCCCCEEEccCc
Confidence 9999999985 88888876542 589999999999999999999999 99999999999999999999999999
Q ss_pred cccccCcccccccccCCCccccccccccccCccccCC-CCCCcccccccCCcCCCccccCCccHHHHHHHhCCCcccccc
Q 040925 688 LAKFLSDHQLDTAVKTPSSSIGLKGTVGYVAPEYGMG-SEASMTGDIFTGRRPIDAVFNEGHSLHEFAKTALPEKVMEIV 766 (833)
Q Consensus 688 ~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Di~s~~~~~~~~~~~g~~l~~~~~~~~p~~~~~~~ 766 (833)
+++....... ......||+.|+|||++.+ ..++.++|||| .|+++++++++..|+......
T Consensus 165 ~a~~~~~~~~--------~~~~~~~t~~y~aPE~~~~~~~~~~~~Diws----------lG~il~~ll~g~~pf~~~~~~ 226 (311)
T 3niz_A 165 LARAFGIPVR--------SYTHEVVTLWYRAPDVLMGSKKYSTSVDIWS----------IGCIFAEMITGKPLFPGVTDD 226 (311)
T ss_dssp TCEETTSCCC-----------CCCCCCTTCCHHHHTTCCSCCTHHHHHH----------HHHHHHHHHHSSCSCCCSSTT
T ss_pred CceecCCCcc--------cccCCcccCCcCCHHHhcCCCCCCchHHhHH----------HHHHHHHHHhCCCCCCCCChH
Confidence 9986643221 1123468999999999876 56899999999 788888998888776522111
Q ss_pred cccch-hhhcccc------------------c--hhhhhhhhchHHHHHHHHHHhhccCCCCCCCCCCHHHHHHH
Q 040925 767 DPSLL-MEVMTNN------------------S--MIQEDKRVKTEECLNAIIRTGVLCSMESPFERMDMRDVVAK 820 (833)
Q Consensus 767 ~~~~~-~~~~~~~------------------~--~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~ 820 (833)
+.... ....... . ..........+.+++++.+++.+||+.||++|||++|+++.
T Consensus 227 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~h 301 (311)
T 3niz_A 227 DQLPKIFSILGTPNPREWPQVQELPLWKQRTFQVFEKKPWSSIIPGFCQEGIDLLSNMLCFDPNKRISARDAMNH 301 (311)
T ss_dssp THHHHHHHHHCCCCTTTSGGGTTSHHHHSCCCCCCCCCCHHHHSTTCCHHHHHHHHHHSCSCTTTSCCHHHHHTS
T ss_pred HHHHHHHHHHCCCChHHhhhhhccchhhhcccccccCCcHHHhCcccCHHHHHHHHHHcCCChhHCCCHHHHhcC
Confidence 10000 0000000 0 00000011112245678899999999999999999999863
No 127
>3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 4hvd_A* 4hvg_A* 4hvh_A* 4hvi_A* 3pjc_A* 1yvj_A*
Probab=100.00 E-value=6.9e-39 Score=343.57 Aligned_cols=270 Identities=20% Similarity=0.252 Sum_probs=208.3
Q ss_pred cCCccCceeccCcceEEEEEE----ECCCceEEEEEEeeccCCcchhHHHHHHHHHhhcCCCccceEeeEeecCCCCCCc
Q 040925 531 GEFSSSNMIGQGSFGYVYKGT----LGEDEMIVAVKVINLKYKGASRSFVAECEALRNIRHRNLIKIITICSSTDFKGTD 606 (833)
Q Consensus 531 ~~y~~~~~lg~G~~g~Vy~~~----~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~ 606 (833)
++|++.+.||+|+||.||+|+ ...+++.||||++........+.+.+|++++++++||||+++++++...+ ..
T Consensus 23 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~---~~ 99 (327)
T 3lxl_A 23 RHLKYISQLGKGNFGSVELCRYDPLGDNTGALVAVKQLQHSGPDQQRDFQREIQILKALHSDFIVKYRGVSYGPG---RQ 99 (327)
T ss_dssp GGEEEEEEEEEETTEEEEEEEECTTSSSCSEEEEEEEESSCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEECSS---SC
T ss_pred hhhhhhhhccCCCCeEEEEEEeccCCCCcceEEEEEEeccCCHHHHHHHHHHHHHHHhcCCCceeEEEEEEecCC---Cc
Confidence 579999999999999999999 45689999999997665555677999999999999999999999876432 45
Q ss_pred eEeEEEEecCCCChhhhhccCCCccccccCCHHHHHHHHHHHHHHHHHHhhcCCCCceeeCCCCCCeeecCCCcEEEccc
Q 040925 607 FKAFVFEYMENGSLKDWLHQSDDQVEVCKLSLIQRVNIAIDVASAMEYLHHHCQPPMVHGDLKPSNVLLDHDMVAHVCDF 686 (833)
Q Consensus 607 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~gL~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kL~Df 686 (833)
..++||||+++|+|.+++..... .+++.+++.++.|++.||+|||+. +|+||||||+||+++.++.+||+||
T Consensus 100 ~~~lv~e~~~~~~L~~~l~~~~~-----~~~~~~~~~i~~qi~~al~~lH~~---~ivH~Dikp~NIl~~~~~~~kl~Df 171 (327)
T 3lxl_A 100 SLRLVMEYLPSGCLRDFLQRHRA-----RLDASRLLLYSSQICKGMEYLGSR---RCVHRDLAARNILVESEAHVKIADF 171 (327)
T ss_dssp EEEEEEECCTTCBHHHHHHHHGG-----GCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEEETTEEEECCG
T ss_pred eEEEEEeecCCCCHHHHHHhccc-----CCCHHHHHHHHHHHHHHHHHHHhC---CccCCCCChhhEEECCCCCEEEccc
Confidence 78999999999999999986432 589999999999999999999999 9999999999999999999999999
Q ss_pred ccccccCcccccccccCCCccccccccccccCccccCCCCCCcccccccCCcCCCccccCCccHHHHHHHhCCCcccccc
Q 040925 687 GLAKFLSDHQLDTAVKTPSSSIGLKGTVGYVAPEYGMGSEASMTGDIFTGRRPIDAVFNEGHSLHEFAKTALPEKVMEIV 766 (833)
Q Consensus 687 G~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~s~~~~~~~~~~~g~~l~~~~~~~~p~~~~~~~ 766 (833)
|+++.......... ......||+.|+|||++.+..++.++|||| +|+++++++++..|+......
T Consensus 172 g~~~~~~~~~~~~~-----~~~~~~~~~~y~aPE~~~~~~~~~~~Di~s----------lG~il~~ll~g~~p~~~~~~~ 236 (327)
T 3lxl_A 172 GLAKLLPLDKDYYV-----VREPGQSPIFWYAPESLSDNIFSRQSDVWS----------FGVVLYELFTYCDKSCSPSAE 236 (327)
T ss_dssp GGCEECCTTCSEEE-----CSSCCCSCGGGSCHHHHHHCEEEHHHHHHH----------HHHHHHHHHTTTCGGGSHHHH
T ss_pred ccceecccCCccce-----eeccCCccccccCHHHhccCCCChHHhHHH----------HHHHHHHHHhCCCCCccccch
Confidence 99987654322111 112245899999999999888999999999 777888888877765421110
Q ss_pred c---------ccchhhhccccchhhhhhhhchHHHHHHHHHHhhccCCCCCCCCCCHHHHHHHHHHhhhhh
Q 040925 767 D---------PSLLMEVMTNNSMIQEDKRVKTEECLNAIIRTGVLCSMESPFERMDMRDVVAKLCHTRETF 828 (833)
Q Consensus 767 ~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~i~~~~ 828 (833)
. ......... ..........+..+++.+.+++.+||+.||++|||++|+++.|+.+....
T Consensus 237 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~~~~~~ 305 (327)
T 3lxl_A 237 FLRMMGCERDVPALSRLLE--LLEEGQRLPAPPACPAEVHELMKLCWAPSPQDRPSFSALGPQLDMLWSGS 305 (327)
T ss_dssp HHHHCC----CCHHHHHHH--HHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHC----
T ss_pred hhhhcccccccccHHHHHH--HhhcccCCCCCCcccHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHhhh
Confidence 0 000000000 00000011122345678899999999999999999999999999887543
No 128
>3f3z_A Calcium/calmodulin-dependent protein kinase with domain and 4 calmodulin like EF...; calcium dependent protein kinase; HET: SEP DRK; 1.84A {Cryptosporidium parvum iowa II} PDB: 2qg5_A*
Probab=100.00 E-value=2.9e-38 Score=330.31 Aligned_cols=252 Identities=21% Similarity=0.224 Sum_probs=205.2
Q ss_pred hcCCccCceeccCcceEEEEEEECCCceEEEEEEeeccCCcchhHHHHHHHHHhhcCCCccceEeeEeecCCCCCCceEe
Q 040925 530 TGEFSSSNMIGQGSFGYVYKGTLGEDEMIVAVKVINLKYKGASRSFVAECEALRNIRHRNLIKIITICSSTDFKGTDFKA 609 (833)
Q Consensus 530 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~~ 609 (833)
.++|++.+.||+|+||.||+|++..++..||+|++........+.+.+|++++++++||||+++++++.... ..+
T Consensus 8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~-----~~~ 82 (277)
T 3f3z_A 8 NQYYTLENTIGRGSWGEVKIAVQKGTRIRRAAKKIPKYFVEDVDRFKQEIEIMKSLDHPNIIRLYETFEDNT-----DIY 82 (277)
T ss_dssp HHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCSCHHHHHHHHHHHHTCCCTTBCCEEEEEECSS-----EEE
T ss_pred hhhEEeeeEEeecCCEEEEEEEeCCCCcEEEEEeehhhccchHHHHHHHHHHHHhCCCCCEeeEEEEEecCC-----eEE
Confidence 467999999999999999999999999999999998665666788999999999999999999999976554 899
Q ss_pred EEEEecCCCChhhhhccCCCccccccCCHHHHHHHHHHHHHHHHHHhhcCCCCceeeCCCCCCeee---cCCCcEEEccc
Q 040925 610 FVFEYMENGSLKDWLHQSDDQVEVCKLSLIQRVNIAIDVASAMEYLHHHCQPPMVHGDLKPSNVLL---DHDMVAHVCDF 686 (833)
Q Consensus 610 lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~gL~~LH~~~~~~ivH~Dlkp~NIll---~~~~~~kL~Df 686 (833)
+||||+++++|.+++.... .+++.+++.++.|++.||+|||+. +|+||||||+||++ +.++.+||+||
T Consensus 83 lv~e~~~~~~L~~~~~~~~------~~~~~~~~~i~~~i~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~~~~~l~Df 153 (277)
T 3f3z_A 83 LVMELCTGGELFERVVHKR------VFRESDAARIMKDVLSAVAYCHKL---NVAHRDLKPENFLFLTDSPDSPLKLIDF 153 (277)
T ss_dssp EEEECCCSCBHHHHHHHHC------SCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEESSSSTTCCEEECCC
T ss_pred EEEeccCCCcHHHHHHHcC------CCCHHHHHHHHHHHHHHHHHHHHC---CccCCCCCHHHEEEecCCCCCcEEEEec
Confidence 9999999999999987654 689999999999999999999999 99999999999999 78899999999
Q ss_pred ccccccCcccccccccCCCccccccccccccCccccCCCCCCcccccccCCcCCCccccCCccHHHHHHHhCCCcccccc
Q 040925 687 GLAKFLSDHQLDTAVKTPSSSIGLKGTVGYVAPEYGMGSEASMTGDIFTGRRPIDAVFNEGHSLHEFAKTALPEKVMEIV 766 (833)
Q Consensus 687 G~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~s~~~~~~~~~~~g~~l~~~~~~~~p~~~~~~~ 766 (833)
|++........ .....||+.|+|||++.+. ++.++|||| .|+++++++++..|+.....
T Consensus 154 g~~~~~~~~~~---------~~~~~~t~~y~aPE~~~~~-~~~~~Di~s----------lG~~l~~l~~g~~p~~~~~~- 212 (277)
T 3f3z_A 154 GLAARFKPGKM---------MRTKVGTPYYVSPQVLEGL-YGPECDEWS----------AGVMMYVLLCGYPPFSAPTD- 212 (277)
T ss_dssp TTCEECCTTSC---------BCCCCSCTTTCCHHHHTTC-BCTTHHHHH----------HHHHHHHHHHSSCSSCCSSH-
T ss_pred ccceeccCccc---------hhccCCCCCccChHHhccc-CCchhhehh----------HHHHHHHHHHCCCCCCCCCH-
Confidence 99986644221 1234699999999988764 899999999 88899999999988753221
Q ss_pred cccchhhhccccchhhhhhhhchHHHHHHHHHHhhccCCCCCCCCCCHHHHHHH
Q 040925 767 DPSLLMEVMTNNSMIQEDKRVKTEECLNAIIRTGVLCSMESPFERMDMRDVVAK 820 (833)
Q Consensus 767 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~ 820 (833)
.............. .......+++.+.+++.+||+.||++|||+.|+++.
T Consensus 213 -~~~~~~~~~~~~~~---~~~~~~~~~~~~~~li~~~l~~dp~~R~s~~~~l~h 262 (277)
T 3f3z_A 213 -SEVMLKIREGTFTF---PEKDWLNVSPQAESLIRRLLTKSPKQRITSLQALEH 262 (277)
T ss_dssp -HHHHHHHHHCCCCC---CHHHHTTSCHHHHHHHHHHTCSSTTTSCCHHHHTTS
T ss_pred -HHHHHHHHhCCCCC---CchhhhcCCHHHHHHHHHHccCChhhCcCHHHHhcC
Confidence 11111111111100 011111346678999999999999999999999864
No 129
>4e5w_A Tyrosine-protein kinase JAK1; kinase domain, transferase-transferase inhibit complex; HET: PTR 0NT; 1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 4ehz_A* 4ei4_A* 4fk6_A* 3eyg_A* 3eyh_A*
Probab=100.00 E-value=1.3e-38 Score=337.57 Aligned_cols=268 Identities=23% Similarity=0.355 Sum_probs=203.5
Q ss_pred cCCccCceeccCcceEEEEEE----ECCCceEEEEEEeeccC-CcchhHHHHHHHHHhhcCCCccceEeeEeecCCCCCC
Q 040925 531 GEFSSSNMIGQGSFGYVYKGT----LGEDEMIVAVKVINLKY-KGASRSFVAECEALRNIRHRNLIKIITICSSTDFKGT 605 (833)
Q Consensus 531 ~~y~~~~~lg~G~~g~Vy~~~----~~~~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~ 605 (833)
.+|++.+.||+|+||.||+|+ ...+++.||||+++... ....+.+.+|++++++++||||+++++++...+ .
T Consensus 21 ~~~~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~---~ 97 (302)
T 4e5w_A 21 RFLKRIRDLGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPESGGNHIADLKKEIEILRNLYHENIVKYKGICTEDG---G 97 (302)
T ss_dssp GGEEEEEEEEECSSEEEEEEEECTTSSSCSEEEEEEEEC-----CCHHHHHHHHHHHHTCCCTTBCCEEEEEEC------
T ss_pred hhhhhhhccCCCCceEEEEEEEccccCccCeEEEEEEecccccchhHHHHHHHHHHHHhCCCCCeeeeeeEEecCC---C
Confidence 458999999999999999999 45689999999997443 234577899999999999999999999987542 3
Q ss_pred ceEeEEEEecCCCChhhhhccCCCccccccCCHHHHHHHHHHHHHHHHHHhhcCCCCceeeCCCCCCeeecCCCcEEEcc
Q 040925 606 DFKAFVFEYMENGSLKDWLHQSDDQVEVCKLSLIQRVNIAIDVASAMEYLHHHCQPPMVHGDLKPSNVLLDHDMVAHVCD 685 (833)
Q Consensus 606 ~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~gL~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kL~D 685 (833)
...++||||+++|+|.+++..... .+++.+++.++.|++.||+|||+. +|+||||||+||+++.++.+||+|
T Consensus 98 ~~~~lv~e~~~~~~L~~~l~~~~~-----~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dikp~Nil~~~~~~~kl~D 169 (302)
T 4e5w_A 98 NGIKLIMEFLPSGSLKEYLPKNKN-----KINLKQQLKYAVQICKGMDYLGSR---QYVHRDLAARNVLVESEHQVKIGD 169 (302)
T ss_dssp CCEEEEEECCTTCBHHHHHHHHTT-----TCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEEETTEEEECC
T ss_pred ceEEEEEEeCCCCcHHHHHHhccc-----cCCHHHHHHHHHHHHHHHHHhhcC---CcccCCCchheEEEcCCCCEEECc
Confidence 468999999999999999965432 689999999999999999999999 999999999999999999999999
Q ss_pred cccccccCcccccccccCCCccccccccccccCccccCCCCCCcccccccCCcCCCccccCCccHHHHHHHhCCCccccc
Q 040925 686 FGLAKFLSDHQLDTAVKTPSSSIGLKGTVGYVAPEYGMGSEASMTGDIFTGRRPIDAVFNEGHSLHEFAKTALPEKVMEI 765 (833)
Q Consensus 686 fG~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~s~~~~~~~~~~~g~~l~~~~~~~~p~~~~~~ 765 (833)
||++.......... .......||+.|+|||++.+..++.++|||| .|+++++++++..|+.....
T Consensus 170 fg~~~~~~~~~~~~-----~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~s----------lG~il~~l~~g~~p~~~~~~ 234 (302)
T 4e5w_A 170 FGLTKAIETDKEYY-----TVKDDRDSPVFWYAPECLMQSKFYIASDVWS----------FGVTLHELLTYCDSDSSPMA 234 (302)
T ss_dssp CTTCEECCTTCCEE-----ECCCCTTCCGGGCCHHHHHHCEEEHHHHHHH----------HHHHHHHHHTTTCGGGSHHH
T ss_pred ccccccccCCCcce-----eccCCCCCCccccCCeeecCCCCCcchhHHH----------HHHHHHHHHHccCCCcchhh
Confidence 99998765432211 1112345899999999999989999999999 77777788777665431100
Q ss_pred -----ccc---cchhhhccccchhhhhhhhchHHHHHHHHHHhhccCCCCCCCCCCHHHHHHHHHHhh
Q 040925 766 -----VDP---SLLMEVMTNNSMIQEDKRVKTEECLNAIIRTGVLCSMESPFERMDMRDVVAKLCHTR 825 (833)
Q Consensus 766 -----~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~i~ 825 (833)
..+ .......... .........+..+++.+.+++.+||+.||++|||++|+++.|+++.
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~L~~ll 301 (302)
T 4e5w_A 235 LFLKMIGPTHGQMTVTRLVNT-LKEGKRLPCPPNCPDEVYQLMRKCWEFQPSNRTSFQNLIEGFEALL 301 (302)
T ss_dssp HHHHHHCSCCGGGHHHHHHHH-HHTTCCCCCCTTCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHHHHH
T ss_pred HHhhccCCcccccCHHHHHHH-HhccCCCCCCCCCCHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHh
Confidence 000 0000000000 0000011122345678899999999999999999999999999875
No 130
>3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors, virtual screening, X-RAY CO- crystal analysis, structure-based drug design (SBDD); HET: MMH; 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A* 2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A* 3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A* 4dea_A* 4deb_A* ...
Probab=100.00 E-value=1.5e-38 Score=332.94 Aligned_cols=249 Identities=21% Similarity=0.311 Sum_probs=201.4
Q ss_pred HhcCCccCceeccCcceEEEEEEECCCceEEEEEEeeccC---CcchhHHHHHHHHHhhcCCCccceEeeEeecCCCCCC
Q 040925 529 ATGEFSSSNMIGQGSFGYVYKGTLGEDEMIVAVKVINLKY---KGASRSFVAECEALRNIRHRNLIKIITICSSTDFKGT 605 (833)
Q Consensus 529 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~ 605 (833)
+.++|++.+.||+|+||.||+|++..+++.||+|++.... ....+.+.+|++++++++||||+++++++....
T Consensus 7 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~---- 82 (279)
T 3fdn_A 7 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYGYFHDAT---- 82 (279)
T ss_dssp CGGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHHTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSS----
T ss_pred ecccEEEeeEEecCCCeEEEEEEEccCCcEEEEEEEeccccchhhHHHHHHHHHHHHHcCCCCCCcchhheEecCC----
Confidence 3568999999999999999999999999999999986432 223467899999999999999999999976554
Q ss_pred ceEeEEEEecCCCChhhhhccCCCccccccCCHHHHHHHHHHHHHHHHHHhhcCCCCceeeCCCCCCeeecCCCcEEEcc
Q 040925 606 DFKAFVFEYMENGSLKDWLHQSDDQVEVCKLSLIQRVNIAIDVASAMEYLHHHCQPPMVHGDLKPSNVLLDHDMVAHVCD 685 (833)
Q Consensus 606 ~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~gL~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kL~D 685 (833)
..++||||+++|+|.+++.... .+++..++.++.|++.||+|||+. ||+||||||+||+++.++.+||+|
T Consensus 83 -~~~lv~e~~~~~~l~~~l~~~~------~~~~~~~~~~~~qi~~~l~~LH~~---~i~H~dlkp~Nili~~~~~~~l~D 152 (279)
T 3fdn_A 83 -RVYLILEYAPLGTVYRELQKLS------KFDEQRTATYITELANALSYCHSK---RVIHRDIKPENLLLGSAGELKIAD 152 (279)
T ss_dssp -EEEEEECCCTTEEHHHHHHHHS------SCCHHHHHHHHHHHHHHHHHHHTT---TCEECCCCGGGEEECTTSCEEECS
T ss_pred -EEEEEEecCCCCcHHHHHHhcC------CCCHHHHHHHHHHHHHHHHHHHhC---CEecccCChHhEEEcCCCCEEEEe
Confidence 8999999999999999997654 689999999999999999999999 999999999999999999999999
Q ss_pred cccccccCcccccccccCCCccccccccccccCccccCCCCCCcccccccCCcCCCccccCCccHHHHHHHhCCCccccc
Q 040925 686 FGLAKFLSDHQLDTAVKTPSSSIGLKGTVGYVAPEYGMGSEASMTGDIFTGRRPIDAVFNEGHSLHEFAKTALPEKVMEI 765 (833)
Q Consensus 686 fG~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~s~~~~~~~~~~~g~~l~~~~~~~~p~~~~~~ 765 (833)
||++....... .....||+.|+|||++.+..++.++|||| .|+++++++++..|+.....
T Consensus 153 fg~~~~~~~~~----------~~~~~~~~~y~aPE~~~~~~~~~~~Di~s----------lG~il~~l~~g~~p~~~~~~ 212 (279)
T 3fdn_A 153 FGWSVHAPSSR----------RTDLCGTLDYLPPEMIEGRMHDEKVDLWS----------LGVLCYEFLVGKPPFEANTY 212 (279)
T ss_dssp CCEESCC------------------CCCCTTCCHHHHTTCCCCTTHHHHH----------HHHHHHHHHHSSCTTCCSSH
T ss_pred ccccccCCccc----------ccccCCCCCccCHhHhccCCCCccchhHh----------HHHHHHHHHHCCCCCCCCcH
Confidence 99986543321 12346999999999999999999999999 88899999999888753221
Q ss_pred ccccchhhhccccchhhhhhhhchHHHHHHHHHHhhccCCCCCCCCCCHHHHHHH
Q 040925 766 VDPSLLMEVMTNNSMIQEDKRVKTEECLNAIIRTGVLCSMESPFERMDMRDVVAK 820 (833)
Q Consensus 766 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~ 820 (833)
.+.. ...... ....+..+++.+.+++.+||+.||++|||++|+++.
T Consensus 213 ~~~~--~~~~~~-------~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~e~l~h 258 (279)
T 3fdn_A 213 QETY--KRISRV-------EFTFPDFVTEGARDLISRLLKHNPSQRPMLREVLEH 258 (279)
T ss_dssp HHHH--HHHHHT-------CCCCCTTSCHHHHHHHHHHCCSSGGGSCCHHHHHHC
T ss_pred HHHH--HHHHhC-------CCCCCCcCCHHHHHHHHHHhccChhhCCCHHHHhhC
Confidence 1100 000000 001122245678899999999999999999999976
No 131
>2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens}
Probab=100.00 E-value=1.5e-38 Score=340.72 Aligned_cols=274 Identities=22% Similarity=0.366 Sum_probs=210.9
Q ss_pred hcCCccCceeccCcceEEEEEEE----CCCceEEEEEEeeccCCcchhHHHHHHHHHhhcCCCccceEeeEeecCCCCCC
Q 040925 530 TGEFSSSNMIGQGSFGYVYKGTL----GEDEMIVAVKVINLKYKGASRSFVAECEALRNIRHRNLIKIITICSSTDFKGT 605 (833)
Q Consensus 530 ~~~y~~~~~lg~G~~g~Vy~~~~----~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~ 605 (833)
.++|++.+.||+|+||.||+|++ ..+++.||||+++.......+.+.+|++++++++||||+++++++...+ .
T Consensus 40 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~---~ 116 (326)
T 2w1i_A 40 ERHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAG---R 116 (326)
T ss_dssp GGGEEEEEEEECCSSEEEEEEEECTTSSSCCEEEEEEEESSCCSHHHHHHHHHHHHHHTCCCTTBCCEEEEECC------
T ss_pred HHHceeeeeeccCCCeEEEEEEeccccCCCceEEEEEEeccCCHHHHHHHHHHHHHHHhCCCCCeeeEEEEEEecC---C
Confidence 35799999999999999999984 5679999999998665555678999999999999999999999875432 3
Q ss_pred ceEeEEEEecCCCChhhhhccCCCccccccCCHHHHHHHHHHHHHHHHHHhhcCCCCceeeCCCCCCeeecCCCcEEEcc
Q 040925 606 DFKAFVFEYMENGSLKDWLHQSDDQVEVCKLSLIQRVNIAIDVASAMEYLHHHCQPPMVHGDLKPSNVLLDHDMVAHVCD 685 (833)
Q Consensus 606 ~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~gL~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kL~D 685 (833)
...++||||+++|+|.+++..... .+++.+++.++.|++.||+|||+. +|+||||||+||+++.++.+||+|
T Consensus 117 ~~~~lv~e~~~~~~L~~~l~~~~~-----~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~dikp~NIli~~~~~~kL~D 188 (326)
T 2w1i_A 117 RNLKLIMEYLPYGSLRDYLQKHKE-----RIDHIKLLQYTSQICKGMEYLGTK---RYIHRDLATRNILVENENRVKIGD 188 (326)
T ss_dssp -CCEEEECCCTTCBHHHHHHHSTT-----SSCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEEEETTEEEECC
T ss_pred CceEEEEECCCCCCHHHHHHhccc-----CCCHHHHHHHHHHHHHHHHHHHhC---CEeccCCCcceEEEcCCCcEEEec
Confidence 467899999999999999987542 589999999999999999999999 999999999999999999999999
Q ss_pred cccccccCcccccccccCCCccccccccccccCccccCCCCCCcccccccCCcCCCccccCCccHHHHHHHhCCCcccc-
Q 040925 686 FGLAKFLSDHQLDTAVKTPSSSIGLKGTVGYVAPEYGMGSEASMTGDIFTGRRPIDAVFNEGHSLHEFAKTALPEKVME- 764 (833)
Q Consensus 686 fG~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~s~~~~~~~~~~~g~~l~~~~~~~~p~~~~~- 764 (833)
||+++........... .....+|..|+|||++.+..++.++|||| +|+++++++++..|+....
T Consensus 189 fg~~~~~~~~~~~~~~-----~~~~~~~~~y~aPE~~~~~~~~~~~Di~s----------lG~il~el~tg~~~~~~~~~ 253 (326)
T 2w1i_A 189 FGLTKVLPQDKEYYKV-----KEPGESPIFWYAPESLTESKFSVASDVWS----------FGVVLYELFTYIEKSKSPPA 253 (326)
T ss_dssp CTTCEECCSSCSEEEC-----SSCCSCCGGGCCHHHHHHCEEEHHHHHHH----------HHHHHHHHHHTTCGGGSHHH
T ss_pred Ccchhhcccccccccc-----ccCCCCceeEECchhhcCCCCCchhhHHH----------HHHHHHHHHhcCCCCCCCHH
Confidence 9999876543211111 11235788899999998888999999999 7888888888876654210
Q ss_pred -c---ccc----cchhhhccccchhhhhhhhchHHHHHHHHHHhhccCCCCCCCCCCHHHHHHHHHHhhhhhhc
Q 040925 765 -I---VDP----SLLMEVMTNNSMIQEDKRVKTEECLNAIIRTGVLCSMESPFERMDMRDVVAKLCHTRETFLG 830 (833)
Q Consensus 765 -~---~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~i~~~~~~ 830 (833)
. ... ......... ..........+..++..+.+++.+||..||++|||+.|+++.|+.+.+.+.|
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~el~~~L~~l~~~l~g 326 (326)
T 2w1i_A 254 EFMRMIGNDKQGQMIVFHLIE-LLKNNGRLPRPDGCPDEIYMIMTECWNNNVNQRPSFRDLALRVDQIRDQMAG 326 (326)
T ss_dssp HHHHHHCTTCCTHHHHHHHHH-HHHTTCCCCCCTTCCHHHHHHHHHHSCSSGGGSCCHHHHHHHHHHHHHHHHC
T ss_pred HHHHhhccccchhhhHHHHHH-HhhcCCCCCCCCcccHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHHhcC
Confidence 0 000 000000000 0000001112234567899999999999999999999999999999887643
No 132
>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B
Probab=100.00 E-value=9.2e-39 Score=357.63 Aligned_cols=261 Identities=22% Similarity=0.397 Sum_probs=208.4
Q ss_pred HHHhcCCccCceeccCcceEEEEEEECCCceEEEEEEeeccCCcchhHHHHHHHHHhhcCCCccceEeeEeecCCCCCCc
Q 040925 527 SKATGEFSSSNMIGQGSFGYVYKGTLGEDEMIVAVKVINLKYKGASRSFVAECEALRNIRHRNLIKIITICSSTDFKGTD 606 (833)
Q Consensus 527 ~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~ 606 (833)
....++|++.+.||+|+||.||+|++. ++..||||+++... ...+.+.+|++++++++||||+++++++.. .
T Consensus 184 ~i~~~~~~~~~~lG~G~fg~V~~~~~~-~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~h~~iv~l~~~~~~------~ 255 (454)
T 1qcf_A 184 EIPRESLKLEKKLGAGQFGEVWMATYN-KHTKVAVKTMKPGS-MSVEAFLAEANVMKTLQHDKLVKLHAVVTK------E 255 (454)
T ss_dssp BCCGGGEEEEEEEECCSSEEEEEEEET-TTEEEEEEEECTTS-BCHHHHHHHHHHHTTCCCTTBCCEEEEECS------S
T ss_pred eechHHeEEEEEcccCCceEEEEEEEC-CccEEEEEEecCCC-ccHHHHHHHHHHHhhCCCCCEeeEEEEEeC------C
Confidence 344568999999999999999999997 57889999997543 356789999999999999999999999742 2
Q ss_pred eEeEEEEecCCCChhhhhccCCCccccccCCHHHHHHHHHHHHHHHHHHhhcCCCCceeeCCCCCCeeecCCCcEEEccc
Q 040925 607 FKAFVFEYMENGSLKDWLHQSDDQVEVCKLSLIQRVNIAIDVASAMEYLHHHCQPPMVHGDLKPSNVLLDHDMVAHVCDF 686 (833)
Q Consensus 607 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~gL~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kL~Df 686 (833)
..++||||+++|+|.+++..... ..+++..++.++.|++.||+|||++ +|+||||||+||+++.++.+||+||
T Consensus 256 ~~~lv~e~~~~g~L~~~l~~~~~----~~~~~~~~~~~~~qi~~~l~~LH~~---~ivHrDlkp~Nill~~~~~~kl~DF 328 (454)
T 1qcf_A 256 PIYIITEFMAKGSLLDFLKSDEG----SKQPLPKLIDFSAQIAEGMAFIEQR---NYIHRDLRAANILVSASLVCKIADF 328 (454)
T ss_dssp SCEEEECCCTTCBHHHHHHSHHH----HTCCHHHHHHHHHHHHHHHHHHHHT---TCCCSSCSGGGEEECTTCCEEECST
T ss_pred ccEEEEeecCCCcHHHHHHhccC----CCCCHHHHHHHHHHHHHHHHHHHhC---CccCCCCCHHHEEECCCCcEEEeeC
Confidence 57899999999999999986432 2588999999999999999999999 9999999999999999999999999
Q ss_pred ccccccCcccccccccCCCccccccccccccCccccCCCCCCcccccccCCcCCCccccCCccHHHHHH-HhCCCccccc
Q 040925 687 GLAKFLSDHQLDTAVKTPSSSIGLKGTVGYVAPEYGMGSEASMTGDIFTGRRPIDAVFNEGHSLHEFAK-TALPEKVMEI 765 (833)
Q Consensus 687 G~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~s~~~~~~~~~~~g~~l~~~~~-~~~p~~~~~~ 765 (833)
|+++......... .....+|+.|+|||++.+..++.++|||| +|++++++++ +..|+.....
T Consensus 329 G~a~~~~~~~~~~-------~~~~~~~~~y~aPE~~~~~~~~~~~Dvws----------lG~~l~el~t~g~~P~~~~~~ 391 (454)
T 1qcf_A 329 GLARVIEDNEYTA-------REGAKFPIKWTAPEAINFGSFTIKSDVWS----------FGILLMEIVTYGRIPYPGMSN 391 (454)
T ss_dssp TGGGGBCCHHHHT-------TCSSSSCGGGSCHHHHHHCCCCHHHHHHH----------HHHHHHHHHTTSCCSSTTCCH
T ss_pred CCceEcCCCceec-------cCCCcccccccCHHHhccCCCCcHHHHHh----------HHHHHHHHHhCCCCCCCCCCH
Confidence 9998765432211 11234788999999998889999999999 7888888887 7777642211
Q ss_pred ccccchhhhccccchhhhhhhhchHHHHHHHHHHhhccCCCCCCCCCCHHHHHHHHHHhhhh
Q 040925 766 VDPSLLMEVMTNNSMIQEDKRVKTEECLNAIIRTGVLCSMESPFERMDMRDVVAKLCHTRET 827 (833)
Q Consensus 766 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~i~~~ 827 (833)
.......... . ....+..+++.+.+++.+||..||++|||+++|++.|+.+...
T Consensus 392 --~~~~~~i~~~-~-----~~~~~~~~~~~l~~li~~cl~~dp~~RPt~~~i~~~L~~~~~~ 445 (454)
T 1qcf_A 392 --PEVIRALERG-Y-----RMPRPENCPEELYNIMMRCWKNRPEERPTFEYIQSVLDDFYTA 445 (454)
T ss_dssp --HHHHHHHHHT-C-----CCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTSSSS
T ss_pred --HHHHHHHHcC-C-----CCCCCCCCCHHHHHHHHHHccCChhHCcCHHHHHHHHHHHHhc
Confidence 1111111110 0 0112234567889999999999999999999999999988654
No 133
>2a2a_A Death-associated protein kinase 2; autoinhibition, transferase; 1.47A {Homo sapiens} PDB: 2cke_A* 1wmk_A 1z9x_A 2a27_A 2x0g_A 2xuu_A* 2w4k_A* 2xzs_A
Probab=100.00 E-value=4.6e-38 Score=336.12 Aligned_cols=253 Identities=20% Similarity=0.237 Sum_probs=204.6
Q ss_pred hcCCccCceeccCcceEEEEEEECCCceEEEEEEeeccCCc------chhHHHHHHHHHhhcCCCccceEeeEeecCCCC
Q 040925 530 TGEFSSSNMIGQGSFGYVYKGTLGEDEMIVAVKVINLKYKG------ASRSFVAECEALRNIRHRNLIKIITICSSTDFK 603 (833)
Q Consensus 530 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~------~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~ 603 (833)
.++|++.+.||+|+||.||+|++..+++.||+|+++..... ..+.+.+|+.++++++||||+++++++....
T Consensus 11 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~-- 88 (321)
T 2a2a_A 11 EDFYDIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVSREEIEREVSILRQVLHHNVITLHDVYENRT-- 88 (321)
T ss_dssp HHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSSSCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSS--
T ss_pred hccEEEeeEeeecCCEEEEEEEECCCCeEEEEEEEecccccccccchhHHHHHHHHHHHHhCCCCCcceEEEEEecCC--
Confidence 45799999999999999999999999999999999754322 2467899999999999999999999976554
Q ss_pred CCceEeEEEEecCCCChhhhhccCCCccccccCCHHHHHHHHHHHHHHHHHHhhcCCCCceeeCCCCCCeeecCCC----
Q 040925 604 GTDFKAFVFEYMENGSLKDWLHQSDDQVEVCKLSLIQRVNIAIDVASAMEYLHHHCQPPMVHGDLKPSNVLLDHDM---- 679 (833)
Q Consensus 604 ~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~gL~~LH~~~~~~ivH~Dlkp~NIll~~~~---- 679 (833)
..++||||+++|+|.+++.... .+++..++.++.|++.||+|||+. +|+||||||+||+++.++
T Consensus 89 ---~~~lv~e~~~~~~L~~~l~~~~------~~~~~~~~~i~~qi~~aL~~lH~~---~ivH~dikp~NIl~~~~~~~~~ 156 (321)
T 2a2a_A 89 ---DVVLILELVSGGELFDFLAQKE------SLSEEEATSFIKQILDGVNYLHTK---KIAHFDLKPENIMLLDKNIPIP 156 (321)
T ss_dssp ---EEEEEECCCCSCBHHHHHHTCS------CEEHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEESCTTSSSC
T ss_pred ---EEEEEEEcCCCCcHHHHHHhcC------CCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCChHHEEEecCCCCcC
Confidence 8999999999999999998654 689999999999999999999999 999999999999999888
Q ss_pred cEEEcccccccccCcccccccccCCCccccccccccccCccccCCCCCCcccccccCCcCCCccccCCccHHHHHHHhCC
Q 040925 680 VAHVCDFGLAKFLSDHQLDTAVKTPSSSIGLKGTVGYVAPEYGMGSEASMTGDIFTGRRPIDAVFNEGHSLHEFAKTALP 759 (833)
Q Consensus 680 ~~kL~DfG~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~s~~~~~~~~~~~g~~l~~~~~~~~p 759 (833)
.+||+|||+++....... .....||+.|+|||++.+..++.++|||| .|+++++++++..|
T Consensus 157 ~~kl~Dfg~~~~~~~~~~---------~~~~~gt~~y~aPE~~~~~~~~~~~Di~s----------lG~il~~l~~g~~p 217 (321)
T 2a2a_A 157 HIKLIDFGLAHEIEDGVE---------FKNIFGTPEFVAPEIVNYEPLGLEADMWS----------IGVITYILLSGASP 217 (321)
T ss_dssp CEEECCCTTCEECCTTCC---------CCCCCSCGGGCCHHHHTTCCCCTHHHHHH----------HHHHHHHHHHSCCS
T ss_pred CEEEccCccceecCcccc---------ccccCCCCCccCcccccCCCCCCccccHH----------HHHHHHHHHHCCCC
Confidence 799999999986654221 12346999999999999999999999999 88899999999988
Q ss_pred CcccccccccchhhhccccchhhhhhhhchHHHHHHHHHHhhccCCCCCCCCCCHHHHHHH
Q 040925 760 EKVMEIVDPSLLMEVMTNNSMIQEDKRVKTEECLNAIIRTGVLCSMESPFERMDMRDVVAK 820 (833)
Q Consensus 760 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~ 820 (833)
+..... .............. ........+..+.+++.+||..||++|||++|+++.
T Consensus 218 f~~~~~--~~~~~~i~~~~~~~---~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~e~l~h 273 (321)
T 2a2a_A 218 FLGDTK--QETLANITSVSYDF---DEEFFSHTSELAKDFIRKLLVKETRKRLTIQEALRH 273 (321)
T ss_dssp SCCSSH--HHHHHHHHTTCCCC---CHHHHTTCCHHHHHHHHTTSCSSTTTSCCHHHHHHS
T ss_pred CCCCCH--HHHHHHHHhccccc---ChhhhcccCHHHHHHHHHHcCCChhhCcCHHHHhcC
Confidence 752211 11111111111000 011112345678899999999999999999999874
No 134
>3uzp_A CKI-delta, CKID, casein kinase I isoform delta; CK1D, inhibitor, PF670462, transferase-transferase I complex; HET: 0CK; 1.94A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 1cki_A 1ckj_A
Probab=100.00 E-value=6e-38 Score=331.42 Aligned_cols=272 Identities=23% Similarity=0.290 Sum_probs=211.3
Q ss_pred hcCCccCceeccCcceEEEEEEECCCceEEEEEEeeccCCcchhHHHHHHHHHhhcCCCccceEeeEeecCCCCCCceEe
Q 040925 530 TGEFSSSNMIGQGSFGYVYKGTLGEDEMIVAVKVINLKYKGASRSFVAECEALRNIRHRNLIKIITICSSTDFKGTDFKA 609 (833)
Q Consensus 530 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~~ 609 (833)
.++|++.+.||+|+||.||+|++..+++.||||++.... ..+.+.+|+++++.++|++++..++++... ....+
T Consensus 8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~--~~~~~~~e~~~l~~l~~~~~i~~~~~~~~~----~~~~~ 81 (296)
T 3uzp_A 8 GNRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKT--KHPQLHIESKIYKMMQGGVGIPTIRWCGAE----GDYNV 81 (296)
T ss_dssp TTTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEEESCS--SCCHHHHHHHHHHHHTTSTTCCCEEEEEEE----TTEEE
T ss_pred ccEEEEEEEEccCCCeEEEEEEEcCCCcEEEEEEecCCc--chhHHHHHHHHHHHhhcCCCCCccccccCC----CCceE
Confidence 468999999999999999999998899999999986443 345789999999999998877777666432 34789
Q ss_pred EEEEecCCCChhhhhccCCCccccccCCHHHHHHHHHHHHHHHHHHhhcCCCCceeeCCCCCCeee---cCCCcEEEccc
Q 040925 610 FVFEYMENGSLKDWLHQSDDQVEVCKLSLIQRVNIAIDVASAMEYLHHHCQPPMVHGDLKPSNVLL---DHDMVAHVCDF 686 (833)
Q Consensus 610 lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~gL~~LH~~~~~~ivH~Dlkp~NIll---~~~~~~kL~Df 686 (833)
+||||+ +++|.+++..... .+++.+++.++.|++.||+|||+. +|+||||||+||++ +.++.+||+||
T Consensus 82 lv~e~~-~~~L~~~~~~~~~-----~~~~~~~~~i~~qi~~~l~~lH~~---~ivH~dlkp~NIl~~~~~~~~~~kl~Df 152 (296)
T 3uzp_A 82 MVMELL-GPSLEDLFNFCSR-----KFSLKTVLLLADQMISRIEYIHSK---NFIHRDVKPDNFLMGLGKKGNLVYIIDF 152 (296)
T ss_dssp EEEECC-CCBHHHHHHHTTT-----CCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEECCGGGTTCEEECCC
T ss_pred EEEEec-CCCHHHHHHhhcc-----CCCHHHHHHHHHHHHHHHHHHHhC---CeeeCCCCHHHeEEecCCCCCeEEEeeC
Confidence 999999 8999999975432 689999999999999999999999 99999999999999 48889999999
Q ss_pred ccccccCcccccccccCCCccccccccccccCccccCCCCCCcccccccCCcCCCccccCCccHHHHHHHhCCCcccccc
Q 040925 687 GLAKFLSDHQLDTAVKTPSSSIGLKGTVGYVAPEYGMGSEASMTGDIFTGRRPIDAVFNEGHSLHEFAKTALPEKVMEIV 766 (833)
Q Consensus 687 G~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~s~~~~~~~~~~~g~~l~~~~~~~~p~~~~~~~ 766 (833)
|+++........... .........||+.|+|||++.+..++.++|||| +|+++++++++..|+......
T Consensus 153 g~~~~~~~~~~~~~~-~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~s----------lG~il~~l~~g~~pf~~~~~~ 221 (296)
T 3uzp_A 153 GLAKKYRDARTHQHI-PYRENKNLTGTARYASINTHLGIEQSRRDDLES----------LGYVLMYFNLGSLPWQGLKAA 221 (296)
T ss_dssp TTCEECBCTTTCCBC-CCCCSCCCCSCTTTCCHHHHTTCCCCHHHHHHH----------HHHHHHHHHHSSCTTSSCCCS
T ss_pred CCccccccccccccc-ccccccccccccccCChhhhcCCCCCcchhhHH----------HHHHHHHHHhCCCCCCCcCch
Confidence 999876553321110 011223457999999999999999999999999 888999999999998643222
Q ss_pred cccchhhhccccchhhhhhhhchHHHHHHHHHHhhccCCCCCCCCCCHHHHHHHHHHhhhhh
Q 040925 767 DPSLLMEVMTNNSMIQEDKRVKTEECLNAIIRTGVLCSMESPFERMDMRDVVAKLCHTRETF 828 (833)
Q Consensus 767 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~i~~~~ 828 (833)
+.......+..... ..........+++.+.+++.+||+.||++|||++++++.|+++.+..
T Consensus 222 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~l~~~~~~~ 282 (296)
T 3uzp_A 222 TKRQKYERISEKKM-STPIEVLCKGYPSEFATYLNFCRSLRFDDKPDYSYLRQLFRNLFHRQ 282 (296)
T ss_dssp SSSSHHHHHHHHHH-HSCHHHHTTTSCHHHHHHHHHHHTSCTTCCCCHHHHHHHHHHHHHHT
T ss_pred hhhhhhhhhccccc-CCchHHHHhhCCHHHHHHHHHHHhcCcCcCCCHHHHHHHHHHHHHhc
Confidence 21111111111000 00011111335678999999999999999999999999999997654
No 135
>3g33_A Cell division protein kinase 4; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}
Probab=100.00 E-value=2.2e-38 Score=336.59 Aligned_cols=265 Identities=22% Similarity=0.282 Sum_probs=197.5
Q ss_pred HhcCCccCceeccCcceEEEEEEECCCceEEEEEEeeccCC-----cchhHHHHHHHHHhhcC---CCccceEeeEeecC
Q 040925 529 ATGEFSSSNMIGQGSFGYVYKGTLGEDEMIVAVKVINLKYK-----GASRSFVAECEALRNIR---HRNLIKIITICSST 600 (833)
Q Consensus 529 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~-----~~~~~~~~E~~~l~~l~---h~niv~~~~~~~~~ 600 (833)
..++|++.+.||+|+||.||+|++..+++.||||+++.... .....+.+|++++++++ ||||+++++++...
T Consensus 7 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~niv~~~~~~~~~ 86 (308)
T 3g33_A 7 ATSRYEPVAEIGVGAYGTVYKARDPHSGHFVALKSVRVPNGGGGGGGLPISTVREVALLRRLEAFEHPNVVRLMDVCATS 86 (308)
T ss_dssp ---CCEEEEEECCSSSCCEEEEECTTTCCEEEEEEEEEECCCTTSSCCCHHHHHHHHHHHHHHHHCCTTBCCEEEEEEEC
T ss_pred cccceEEEEEEecCCCeEEEEEEECCCCcEEEEEEEecccccccccccchhHHHHHHHHHHHhhcCCCCeEEeeeeeecc
Confidence 45789999999999999999999998999999999974321 22356788888888875 99999999998766
Q ss_pred CCCCCceEeEEEEecCCCChhhhhccCCCccccccCCHHHHHHHHHHHHHHHHHHhhcCCCCceeeCCCCCCeeecCCCc
Q 040925 601 DFKGTDFKAFVFEYMENGSLKDWLHQSDDQVEVCKLSLIQRVNIAIDVASAMEYLHHHCQPPMVHGDLKPSNVLLDHDMV 680 (833)
Q Consensus 601 ~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~gL~~LH~~~~~~ivH~Dlkp~NIll~~~~~ 680 (833)
........++||||++ |+|.+++...... .+++.+++.++.|++.||+|||+. +|+||||||+||+++.++.
T Consensus 87 ~~~~~~~~~lv~e~~~-~~L~~~~~~~~~~----~~~~~~~~~i~~qi~~al~~lH~~---~ivH~Dlkp~Nil~~~~~~ 158 (308)
T 3g33_A 87 RTDREIKVTLVFEHVD-QDLRTYLDKAPPP----GLPAETIKDLMRQFLRGLDFLHAN---CIVHRDLKPENILVTSGGT 158 (308)
T ss_dssp CSSSEEEEEEEEECCC-CBHHHHHHTCCTT----CSCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCTTTEEECTTSC
T ss_pred CCCCceeEEEEehhhh-cCHHHHHhhccCC----CCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEEEcCCCC
Confidence 5334446899999997 5999999876532 489999999999999999999999 9999999999999999999
Q ss_pred EEEcccccccccCcccccccccCCCccccccccccccCccccCCCCCCcccccccCCcCCCccccCCccHHHHHHHhCCC
Q 040925 681 AHVCDFGLAKFLSDHQLDTAVKTPSSSIGLKGTVGYVAPEYGMGSEASMTGDIFTGRRPIDAVFNEGHSLHEFAKTALPE 760 (833)
Q Consensus 681 ~kL~DfG~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~s~~~~~~~~~~~g~~l~~~~~~~~p~ 760 (833)
+||+|||+|+...... ......||+.|+|||++.+..++.++|||| .|+++++++++..|+
T Consensus 159 ~kl~Dfg~a~~~~~~~---------~~~~~~gt~~y~aPE~~~~~~~~~~~Diws----------lG~il~~l~~g~~pf 219 (308)
T 3g33_A 159 VKLADFGLARIYSYQM---------ALTPVVVTLWYRAPEVLLQSTYATPVDMWS----------VGCIFAEMFRRKPLF 219 (308)
T ss_dssp EEECSCSCTTTSTTCC---------CSGGGGCCCSSCCHHHHHTSCCCSTHHHHH----------HHHHHHHTTTSSCSC
T ss_pred EEEeeCccccccCCCc---------ccCCccccccccCchHHcCCCCCchHHHHH----------HHHHHHHHHhCCCCC
Confidence 9999999998654322 122356999999999999999999999999 555566666665554
Q ss_pred cccccccc--------------cchhhh--ccccc--hhhhhhhhchHHHHHHHHHHhhccCCCCCCCCCCHHHHHHH
Q 040925 761 KVMEIVDP--------------SLLMEV--MTNNS--MIQEDKRVKTEECLNAIIRTGVLCSMESPFERMDMRDVVAK 820 (833)
Q Consensus 761 ~~~~~~~~--------------~~~~~~--~~~~~--~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~ 820 (833)
......+. .+.... ..... ..........+++++.+.+++.+||+.||++|||+.|+++.
T Consensus 220 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~h 297 (308)
T 3g33_A 220 CGNSEADQLGKIFDLIGLPPEDDWPRDVSLPRGAFPPRGPRPVQSVVPEMEESGAQLLLEMLTFNPHKRISAFRALQH 297 (308)
T ss_dssp CCSSHHHHHHHHHHHHCCCCTTTSCSSCSSCGGGSCCCCCCCHHHHSCSCCHHHHHHHHHHTCSSTTTSCCHHHHHTS
T ss_pred CCCCHHHHHHHHHHHhCCCChhhccchhhccccccCCCCCCcHHHhCccccHHHHHHHHHHhcCCCccCCCHHHHhcC
Confidence 31110000 000000 00000 00000011112345678899999999999999999999864
No 136
>3dls_A PAS domain-containing serine/threonine-protein KI; PAS kinase, PASK, protein kinase, drug discovery, ATP-bindin kinase, nucleotide-binding; HET: ADP; 2.30A {Homo sapiens}
Probab=100.00 E-value=1.6e-38 Score=340.96 Aligned_cols=243 Identities=23% Similarity=0.339 Sum_probs=202.4
Q ss_pred HhcCCccCceeccCcceEEEEEEECCCceEEEEEEeeccCC--------cchhHHHHHHHHHhhcCCCccceEeeEeecC
Q 040925 529 ATGEFSSSNMIGQGSFGYVYKGTLGEDEMIVAVKVINLKYK--------GASRSFVAECEALRNIRHRNLIKIITICSST 600 (833)
Q Consensus 529 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~--------~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~ 600 (833)
..++|++.+.||+|+||.||+|++..+++.||||+++.... ...+.+.+|++++++++||||+++++++...
T Consensus 22 ~~~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~Iv~~~~~~~~~ 101 (335)
T 3dls_A 22 YSQKYSTMSPLGSGAFGFVWTAVDKEKNKEVVVKFIKKEKVLEDCWIEDPKLGKVTLEIAILSRVEHANIIKVLDIFENQ 101 (335)
T ss_dssp HHHHEEEEEECSSSSSCSEEEEEETTTTEEEEEEEEESTTSCTTSEEEETTTEEEEHHHHHHTTCCCTTBCCEEEEEECS
T ss_pred cccceEEEeEEEecCCEEEEEEEECCCCcEEEEEEEehhhcccccccchHHHHHHHHHHHHHHhCCCCCEeeEEEEEeeC
Confidence 45689999999999999999999999999999999975431 1334678899999999999999999997655
Q ss_pred CCCCCceEeEEEEecCCC-ChhhhhccCCCccccccCCHHHHHHHHHHHHHHHHHHhhcCCCCceeeCCCCCCeeecCCC
Q 040925 601 DFKGTDFKAFVFEYMENG-SLKDWLHQSDDQVEVCKLSLIQRVNIAIDVASAMEYLHHHCQPPMVHGDLKPSNVLLDHDM 679 (833)
Q Consensus 601 ~~~~~~~~~lv~e~~~~g-sL~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~gL~~LH~~~~~~ivH~Dlkp~NIll~~~~ 679 (833)
+ ..++||||+.+| +|.+++.... .+++..++.++.|++.||+|||+. +|+||||||+||+++.++
T Consensus 102 ~-----~~~lv~e~~~~g~~l~~~~~~~~------~l~~~~~~~i~~qi~~~L~~LH~~---~ivH~Dlkp~NIll~~~~ 167 (335)
T 3dls_A 102 G-----FFQLVMEKHGSGLDLFAFIDRHP------RLDEPLASYIFRQLVSAVGYLRLK---DIIHRDIKDENIVIAEDF 167 (335)
T ss_dssp S-----EEEEEEECCTTSCBHHHHHHTCC------CCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTS
T ss_pred C-----EEEEEEEeCCCCccHHHHHHhcC------CCCHHHHHHHHHHHHHHHHHHHhC---CeEEeccCHHHEEEcCCC
Confidence 4 899999999777 9999998765 689999999999999999999999 999999999999999999
Q ss_pred cEEEcccccccccCcccccccccCCCccccccccccccCccccCCCCC-CcccccccCCcCCCccccCCccHHHHHHHhC
Q 040925 680 VAHVCDFGLAKFLSDHQLDTAVKTPSSSIGLKGTVGYVAPEYGMGSEA-SMTGDIFTGRRPIDAVFNEGHSLHEFAKTAL 758 (833)
Q Consensus 680 ~~kL~DfG~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~-~~~~Di~s~~~~~~~~~~~g~~l~~~~~~~~ 758 (833)
.+||+|||+++....... .....||+.|+|||++.+..+ +.++|||| +|+++++++++..
T Consensus 168 ~~kL~Dfg~a~~~~~~~~---------~~~~~gt~~y~aPE~~~~~~~~~~~~Diws----------lG~il~el~~g~~ 228 (335)
T 3dls_A 168 TIKLIDFGSAAYLERGKL---------FYTFCGTIEYCAPEVLMGNPYRGPELEMWS----------LGVTLYTLVFEEN 228 (335)
T ss_dssp CEEECCCTTCEECCTTCC---------BCEECSCGGGCCHHHHTTCCBCSHHHHHHH----------HHHHHHHHHHSSC
T ss_pred cEEEeecccceECCCCCc---------eeccCCCccccChhhhcCCCCCCCcccchh----------HHHHHHHHHhCCC
Confidence 999999999987654321 123569999999999988876 88999999 8889999999999
Q ss_pred CCccccc-ccccchhhhccccchhhhhhhhchHHHHHHHHHHhhccCCCCCCCCCCHHHHHHH
Q 040925 759 PEKVMEI-VDPSLLMEVMTNNSMIQEDKRVKTEECLNAIIRTGVLCSMESPFERMDMRDVVAK 820 (833)
Q Consensus 759 p~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~ 820 (833)
|+..... ..... ..+..+++.+.+++.+||..||++|||++|+++.
T Consensus 229 pf~~~~~~~~~~~----------------~~~~~~~~~l~~li~~~L~~dP~~Rps~~ell~h 275 (335)
T 3dls_A 229 PFCELEETVEAAI----------------HPPYLVSKELMSLVSGLLQPVPERRTTLEKLVTD 275 (335)
T ss_dssp SCSSGGGGTTTCC----------------CCSSCCCHHHHHHHHHHTCSSGGGSCCHHHHHHC
T ss_pred chhhHHHHHhhcc----------------CCCcccCHHHHHHHHHHccCChhhCcCHHHHhcC
Confidence 8763211 11100 0011135578899999999999999999999875
No 137
>3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A*
Probab=100.00 E-value=1.9e-38 Score=338.11 Aligned_cols=279 Identities=22% Similarity=0.366 Sum_probs=203.3
Q ss_pred HHHHHHhcCCccCceeccCcceEEEEEEECC---CceEEEEEEeeccCC--cchhHHHHHHHHHhhcCCCccceEeeEee
Q 040925 524 AELSKATGEFSSSNMIGQGSFGYVYKGTLGE---DEMIVAVKVINLKYK--GASRSFVAECEALRNIRHRNLIKIITICS 598 (833)
Q Consensus 524 ~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~---~~~~vavK~~~~~~~--~~~~~~~~E~~~l~~l~h~niv~~~~~~~ 598 (833)
.++....++|.+.+.||+|+||.||+|++.. +++.||+|+++.... ...+.+.+|++++++++||||+++++++.
T Consensus 27 ~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~ 106 (313)
T 3brb_A 27 EDVVIDRNLLILGKILGEGEFGSVMEGNLKQEDGTSLKVAVKTMKLDNSSQREIEEFLSEAACMKDFSHPNVIRLLGVCI 106 (313)
T ss_dssp TTTBCCGGGEEEEEEEEC-CCCCEEEEEEECTTSCEEEEEEEEC---CCCHHHHHHHHHHHHHHHTCCCTTBCCCCEEEE
T ss_pred HhcccCHHHeeeccceeecCCeEEEEEEEeccCCceeEEEEEEEeccccchhHHHHHHHHHHHHhcCCCCCeeeeeEEEe
Confidence 3444456789999999999999999998754 566899999975432 23467899999999999999999999987
Q ss_pred cCCCCCCceEeEEEEecCCCChhhhhccCCCccccccCCHHHHHHHHHHHHHHHHHHhhcCCCCceeeCCCCCCeeecCC
Q 040925 599 STDFKGTDFKAFVFEYMENGSLKDWLHQSDDQVEVCKLSLIQRVNIAIDVASAMEYLHHHCQPPMVHGDLKPSNVLLDHD 678 (833)
Q Consensus 599 ~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~gL~~LH~~~~~~ivH~Dlkp~NIll~~~ 678 (833)
.....+....++||||+++|+|.+++...........+++..++.++.|++.||.|||+. +|+||||||+||+++.+
T Consensus 107 ~~~~~~~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~dikp~NIli~~~ 183 (313)
T 3brb_A 107 EMSSQGIPKPMVILPFMKYGDLHTYLLYSRLETGPKHIPLQTLLKFMVDIALGMEYLSNR---NFLHRDLAARNCMLRDD 183 (313)
T ss_dssp C-------CEEEEEECCTTCBHHHHHHHTTBTTSCCCCCHHHHHHHHHHHHHHHHHHHTT---TCCCCCCSGGGEEECTT
T ss_pred eccccCCcccEEEEecccCCCHHHHHHHhhhhcCCccCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCCcceEEEcCC
Confidence 665333345799999999999999995433211223689999999999999999999999 99999999999999999
Q ss_pred CcEEEcccccccccCcccccccccCCCccccccccccccCccccCCCCCCcccccccCCcCCCccccCCccHHHHHH-Hh
Q 040925 679 MVAHVCDFGLAKFLSDHQLDTAVKTPSSSIGLKGTVGYVAPEYGMGSEASMTGDIFTGRRPIDAVFNEGHSLHEFAK-TA 757 (833)
Q Consensus 679 ~~~kL~DfG~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~s~~~~~~~~~~~g~~l~~~~~-~~ 757 (833)
+.+||+|||+++......... ......+++.|+|||++.+..++.++|||| +|++++++++ +.
T Consensus 184 ~~~kl~Dfg~~~~~~~~~~~~------~~~~~~~~~~y~aPE~~~~~~~~~~~Di~s----------lG~il~el~~~g~ 247 (313)
T 3brb_A 184 MTVCVADFGLSKKIYSGDYYR------QGRIAKMPVKWIAIESLADRVYTSKSDVWA----------FGVTMWEIATRGM 247 (313)
T ss_dssp SCEEECSCSCC----------------------CCGGGSCHHHHHSSCCCHHHHHHH----------HHHHHHHHHTTSC
T ss_pred CcEEEeecCcceecccccccC------cccccCCCccccCchhhcCCCccchhhhHH----------HHHHHHHHHhcCC
Confidence 999999999998664432111 112235788999999999999999999999 7888888888 66
Q ss_pred CCCcccccccccchhhhccccchhhhhhhhchHHHHHHHHHHhhccCCCCCCCCCCHHHHHHHHHHhhhhhh
Q 040925 758 LPEKVMEIVDPSLLMEVMTNNSMIQEDKRVKTEECLNAIIRTGVLCSMESPFERMDMRDVVAKLCHTRETFL 829 (833)
Q Consensus 758 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~i~~~~~ 829 (833)
.|+..... ........... ....+..+++.+.+++.+||..||++|||++++++.|+.+.+...
T Consensus 248 ~p~~~~~~--~~~~~~~~~~~------~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~L~~l~~~lp 311 (313)
T 3brb_A 248 TPYPGVQN--HEMYDYLLHGH------RLKQPEDCLDELYEIMYSCWRTDPLDRPTFSVLRLQLEKLLESLP 311 (313)
T ss_dssp CSSTTCCG--GGHHHHHHTTC------CCCCBTTCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHHHHHHHC-
T ss_pred CCCccCCH--HHHHHHHHcCC------CCCCCccccHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHhcC
Confidence 66542211 11111111110 011223456678999999999999999999999999999987654
No 138
>2y94_A 5'-AMP-activated protein kinase catalytic subunit; transferase, nucleotide-binding, staurosporine-binding, serine/threonine-protein kinase; HET: TPO STU AMP; 3.24A {Rattus norvegicus}
Probab=100.00 E-value=2.5e-38 Score=352.68 Aligned_cols=249 Identities=27% Similarity=0.393 Sum_probs=204.1
Q ss_pred hcCCccCceeccCcceEEEEEEECCCceEEEEEEeeccC---CcchhHHHHHHHHHhhcCCCccceEeeEeecCCCCCCc
Q 040925 530 TGEFSSSNMIGQGSFGYVYKGTLGEDEMIVAVKVINLKY---KGASRSFVAECEALRNIRHRNLIKIITICSSTDFKGTD 606 (833)
Q Consensus 530 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~ 606 (833)
.++|.+.+.||+|+||.||+|++..+|+.||||+++... ....+.+.+|+.+++.++||||+++++++...+
T Consensus 15 ~~~Y~l~~~LG~G~fg~V~~a~~~~~g~~vAvK~i~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~~~~~~~~----- 89 (476)
T 2y94_A 15 IGHYILGDTLGVGTFGKVKVGKHELTGHKVAVKILNRQKIRSLDVVGKIRREIQNLKLFRHPHIIKLYQVISTPS----- 89 (476)
T ss_dssp ETTEEEEEEEECCSSSCEEEEEETTTCCEEEEEEEEHHHHHHTTTHHHHHHHHHHHTTCCCTTBCCEEEEEECSS-----
T ss_pred ecCEEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhhhccCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECC-----
Confidence 367999999999999999999999999999999996432 223467899999999999999999999976654
Q ss_pred eEeEEEEecCCCChhhhhccCCCccccccCCHHHHHHHHHHHHHHHHHHhhcCCCCceeeCCCCCCeeecCCCcEEEccc
Q 040925 607 FKAFVFEYMENGSLKDWLHQSDDQVEVCKLSLIQRVNIAIDVASAMEYLHHHCQPPMVHGDLKPSNVLLDHDMVAHVCDF 686 (833)
Q Consensus 607 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~gL~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kL~Df 686 (833)
..++||||+++|+|.+++...+ .+++.+++.++.|++.||+|||+. +|+||||||+||+++.++.+||+||
T Consensus 90 ~~~lv~E~~~gg~L~~~l~~~~------~l~~~~~~~i~~qi~~aL~~LH~~---givHrDLkp~NIll~~~~~vkL~DF 160 (476)
T 2y94_A 90 DIFMVMEYVSGGELFDYICKNG------RLDEKESRRLFQQILSGVDYCHRH---MVVHRDLKPENVLLDAHMNAKIADF 160 (476)
T ss_dssp EEEEEEECCSSEEHHHHTTSSS------SCCHHHHHHHHHHHHHHHHHHHTT---TEECSCCSGGGEEECTTCCEEECCC
T ss_pred EEEEEEeCCCCCcHHHHHHhcC------CCCHHHHHHHHHHHHHHHHHHHHC---CCCcccccHHHEEEecCCCeEEEec
Confidence 8999999999999999998654 689999999999999999999999 9999999999999999999999999
Q ss_pred ccccccCcccccccccCCCccccccccccccCccccCCCCC-CcccccccCCcCCCccccCCccHHHHHHHhCCCccccc
Q 040925 687 GLAKFLSDHQLDTAVKTPSSSIGLKGTVGYVAPEYGMGSEA-SMTGDIFTGRRPIDAVFNEGHSLHEFAKTALPEKVMEI 765 (833)
Q Consensus 687 G~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~-~~~~Di~s~~~~~~~~~~~g~~l~~~~~~~~p~~~~~~ 765 (833)
|++........ ....+||+.|+|||++.+..+ +.++|||| .|+++++++++..|+.....
T Consensus 161 G~a~~~~~~~~---------~~~~~gt~~y~aPE~~~~~~~~~~~~DiwS----------lGvil~elltG~~Pf~~~~~ 221 (476)
T 2y94_A 161 GLSNMMSDGEF---------LRTSCGSPNYAAPEVISGRLYAGPEVDIWS----------SGVILYALLCGTLPFDDDHV 221 (476)
T ss_dssp SSCEECCTTCC---------BCCCCSCSTTCCHHHHTTCCBCSHHHHHHH----------HHHHHHHHHHSSCSSCCSSS
T ss_pred cchhhcccccc---------ccccCCCcCeEChhhccCCCCCCCcceehh----------hHHHHHHHhhCCCCCCCCCH
Confidence 99987644221 123469999999999988765 68999999 88899999999988753221
Q ss_pred ccccchhhhccccchhhhhhhhchHHHHHHHHHHhhccCCCCCCCCCCHHHHHHH
Q 040925 766 VDPSLLMEVMTNNSMIQEDKRVKTEECLNAIIRTGVLCSMESPFERMDMRDVVAK 820 (833)
Q Consensus 766 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~ 820 (833)
............ ..+..+++.+.+++.+||..||++|||++|+++.
T Consensus 222 --~~~~~~i~~~~~-------~~p~~~s~~~~~Li~~~L~~dP~~Rpt~~eil~h 267 (476)
T 2y94_A 222 --PTLFKKICDGIF-------YTPQYLNPSVISLLKHMLQVDPMKRATIKDIREH 267 (476)
T ss_dssp --HHHHHHHHTTCC-------CCCTTCCHHHHHHHHHHTCSSTTTSCCHHHHHTC
T ss_pred --HHHHHHHhcCCc-------CCCccCCHHHHHHHHHHcCCCchhCcCHHHHHhC
Confidence 111111111111 1112235578899999999999999999999874
No 139
>2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens}
Probab=100.00 E-value=3.6e-38 Score=334.44 Aligned_cols=260 Identities=26% Similarity=0.395 Sum_probs=200.2
Q ss_pred hcCCccCceeccCcceEEEEEEECCCceEEEEEEeeccCCcchhHHHHHHHHHhhcCCCccceEeeEeecCCCCCCceEe
Q 040925 530 TGEFSSSNMIGQGSFGYVYKGTLGEDEMIVAVKVINLKYKGASRSFVAECEALRNIRHRNLIKIITICSSTDFKGTDFKA 609 (833)
Q Consensus 530 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~~ 609 (833)
.++|++.+.||+|+||.||+|++. ++.||||+++. ....+.+.+|++++++++||||+++++++.+ ..+
T Consensus 7 ~~~~~~~~~lg~G~~g~V~~~~~~--~~~vavK~~~~--~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~-------~~~ 75 (307)
T 2eva_A 7 YKEIEVEEVVGRGAFGVVCKAKWR--AKDVAIKQIES--ESERKAFIVELRQLSRVNHPNIVKLYGACLN-------PVC 75 (307)
T ss_dssp GGGEEEEEEEECCSSSEEEEEEET--TEEEEEEECSS--TTHHHHHHHHHHHHHHCCCTTBCCEEEBCTT-------TTE
T ss_pred HhHeeeeeEeecCCCceEEEEEEC--CeeEEEEEecC--hhHHHHHHHHHHHHhcCCCCCcCeEEEEEcC-------CcE
Confidence 357999999999999999999985 78899999863 3345789999999999999999999998642 368
Q ss_pred EEEEecCCCChhhhhccCCCccccccCCHHHHHHHHHHHHHHHHHHhhcCCCCceeeCCCCCCeeecCCCc-EEEccccc
Q 040925 610 FVFEYMENGSLKDWLHQSDDQVEVCKLSLIQRVNIAIDVASAMEYLHHHCQPPMVHGDLKPSNVLLDHDMV-AHVCDFGL 688 (833)
Q Consensus 610 lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~gL~~LH~~~~~~ivH~Dlkp~NIll~~~~~-~kL~DfG~ 688 (833)
+||||+++|+|.+++...... ..+++..++.++.|+++||+|||+....+|+||||||+||+++.++. +||+|||+
T Consensus 76 lv~e~~~~~~L~~~l~~~~~~---~~~~~~~~~~~~~qi~~~l~~LH~~~~~~ivH~dlkp~NIll~~~~~~~kl~Dfg~ 152 (307)
T 2eva_A 76 LVMEYAEGGSLYNVLHGAEPL---PYYTAAHAMSWCLQCSQGVAYLHSMQPKALIHRDLKPPNLLLVAGGTVLKICDFGT 152 (307)
T ss_dssp EEEECCTTCBHHHHHHCSSSE---ECCCHHHHHHHHHHHHHHHHHHHTCSSSCCCCCCCSGGGEEEETTTTEEEECCCCC
T ss_pred EEEEcCCCCCHHHHHhccCCC---CccCHHHHHHHHHHHHHHHHHHHhCCCCCeecCCCChhHEEEeCCCCEEEEccccc
Confidence 999999999999999865421 24788999999999999999999931129999999999999998886 79999999
Q ss_pred ccccCcccccccccCCCccccccccccccCccccCCCCCCcccccccCCcCCCccccCCccHHHHHHHhCCCcccccccc
Q 040925 689 AKFLSDHQLDTAVKTPSSSIGLKGTVGYVAPEYGMGSEASMTGDIFTGRRPIDAVFNEGHSLHEFAKTALPEKVMEIVDP 768 (833)
Q Consensus 689 a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~s~~~~~~~~~~~g~~l~~~~~~~~p~~~~~~~~~ 768 (833)
+....... ....||+.|+|||++.+..++.++|||| +|+++++++++..|+........
T Consensus 153 ~~~~~~~~-----------~~~~gt~~y~aPE~~~~~~~~~~~Di~s----------lG~il~el~~g~~p~~~~~~~~~ 211 (307)
T 2eva_A 153 ACDIQTHM-----------TNNKGSAAWMAPEVFEGSNYSEKCDVFS----------WGIILWEVITRRKPFDEIGGPAF 211 (307)
T ss_dssp -----------------------CCTTSSCHHHHTCCCCCTHHHHHH----------HHHHHHHHHHTCCTTTTTCSSHH
T ss_pred cccccccc-----------ccCCCCCceEChhhhCCCCCCcHHHHHH----------HHHHHHHHHHCCCCchhhCccHH
Confidence 97554321 1235999999999999999999999999 88899999999988753211111
Q ss_pred cchhhhccccchhhhhhhhchHHHHHHHHHHhhccCCCCCCCCCCHHHHHHHHHHhhhhhhc
Q 040925 769 SLLMEVMTNNSMIQEDKRVKTEECLNAIIRTGVLCSMESPFERMDMRDVVAKLCHTRETFLG 830 (833)
Q Consensus 769 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~i~~~~~~ 830 (833)
.......... .......++..+.+++.+||+.||++|||++|+++.|+.+.+.+.+
T Consensus 212 ~~~~~~~~~~------~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~~L~~~~~~~~~ 267 (307)
T 2eva_A 212 RIMWAVHNGT------RPPLIKNLPKPIESLMTRCWSKDPSQRPSMEEIVKIMTHLMRYFPG 267 (307)
T ss_dssp HHHHHHHTTC------CCCCBTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHGGGCCC
T ss_pred HHHHHHhcCC------CCCcccccCHHHHHHHHHHhcCChhhCcCHHHHHHHHHHHHHhccC
Confidence 1110000000 0111233456788999999999999999999999999999876543
No 140
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=2.3e-37 Score=359.04 Aligned_cols=338 Identities=19% Similarity=0.165 Sum_probs=199.8
Q ss_pred CCCCCEEEcCCCcccccCCccccCCCCCcEEECCCcccccccCchhhcCCCCccEEEccCCcceeeCCccccCCCCCcEE
Q 040925 46 LRNLVSLNVAENKFSGMFPRSICNISSLELIQLALNRFSGNLPFDIVVNLPNLKALAIGGNNFFGSIPYSLSNASNLELL 125 (833)
Q Consensus 46 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 125 (833)
+.+++.|++++|.++.+.+..|.++++|+.|+|++|.++ .+++..|..+++|++|+|++|.+++..|..|+++++|++|
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 128 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 128 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCC-CCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence 345566666666665544445555666666666666655 4444555556666666666666655555555666666666
Q ss_pred EcccCccccccCcCccCCCcCceEecccccCCCCCCCCcccccccCCCCCCCEEEccCCcCcccCChhHhhhcccccEEE
Q 040925 126 DLSVNQFKGNVSIDFSSLKNLLWLNLEQNNLGTGTATDLDFVTFLTNCSSLKALSLADNQFGGELPHSIANLSSTVINFG 205 (833)
Q Consensus 126 ~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~l~~L~ 205 (833)
+|++|+|+.+++..|.++++|++|+|++|.++.+++ ..|.++++|++|+|++|++++. +
T Consensus 129 ~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~------~~~~~l~~L~~L~L~~N~l~~~-~-------------- 187 (597)
T 3oja_B 129 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIED------DTFQATTSLQNLQLSSNRLTHV-D-------------- 187 (597)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCT------TTTTTCTTCCEEECTTSCCSBC-C--------------
T ss_pred EeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCCh------hhhhcCCcCcEEECcCCCCCCc-C--------------
Confidence 666666665555555666666666666666554433 2245556666666666655521 0
Q ss_pred ccCccccccCChhhhcCCCCCeEeccCCcccccCCccccCCCCCCEEEcccccCcccCCccccCCCCCCeEEeecccccC
Q 040925 206 IGRNQISGTIPPGIRNLVNLIGFGAEENQLHGTIPDAIGELKNLQKLCLFRNFLQGRIPSGLGNLTKLANLELSSNSLQG 285 (833)
Q Consensus 206 l~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 285 (833)
+..+++|+.|++++|.+.+ +...++|+.|++++|.++...+. + .++|+.|+|++|.+++
T Consensus 188 -------------~~~l~~L~~L~l~~n~l~~-----l~~~~~L~~L~ls~n~l~~~~~~-~--~~~L~~L~L~~n~l~~ 246 (597)
T 3oja_B 188 -------------LSLIPSLFHANVSYNLLST-----LAIPIAVEELDASHNSINVVRGP-V--NVELTILKLQHNNLTD 246 (597)
T ss_dssp -------------GGGCTTCSEEECCSSCCSE-----EECCTTCSEEECCSSCCCEEECS-C--CSCCCEEECCSSCCCC
T ss_pred -------------hhhhhhhhhhhcccCcccc-----ccCCchhheeeccCCcccccccc-c--CCCCCEEECCCCCCCC
Confidence 2233445555555555442 22334566666666666533222 1 1456666666666653
Q ss_pred CCCCCCCCCCccceeecCCceecccCCcccccccccceeeecCCCccCCCCCcccccCCCcCEEeccCCcCCCCCCcccc
Q 040925 286 NIPSSLGNCQNLMSFTASQNKLTGALPHQLLSITTLSLYLDLSNNLLNGSLPLQVGHLKNLVILDISSNQFSGVIPGTLS 365 (833)
Q Consensus 286 ~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~ll~~L~ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~ 365 (833)
+..+..+++|+.|++++|.++ +..|..|+.+++|+.|+|++|.+++ +|..+.
T Consensus 247 --~~~l~~l~~L~~L~Ls~N~l~-------------------------~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~ 298 (597)
T 3oja_B 247 --TAWLLNYPGLVEVDLSYNELE-------------------------KIMYHPFVKMQRLERLYISNNRLVA-LNLYGQ 298 (597)
T ss_dssp --CGGGGGCTTCSEEECCSSCCC-------------------------EEESGGGTTCSSCCEEECTTSCCCE-EECSSS
T ss_pred --ChhhccCCCCCEEECCCCccC-------------------------CCCHHHhcCccCCCEEECCCCCCCC-CCcccc
Confidence 234445555544444444443 3445556666777777777777764 355556
Q ss_pred CCCCCcEEeecCCccccccCccccCCCCCCeEEccCcccCCCchhhhcCCCCCceEECccCcCccccCCCCccCCCcccc
Q 040925 366 TCVCLEYLDISSNSFHGVIPLSLSFLKSIKELNVSSNNLSGQIPEFLKNLSVLEFLSLSYNHFEGEVPTKGVFSNKTKIS 445 (833)
Q Consensus 366 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~l~ 445 (833)
.+++|+.|+|++|.++ .+|..+..+++|+.|+|++|.+++.. +..+++|+.|++++|+|+|.+... .+.......
T Consensus 299 ~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~L~~L~l~~N~~~~~~~~~-~~~~~~~~~ 373 (597)
T 3oja_B 299 PIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK---LSTHHTLKNLTLSHNDWDCNSLRA-LFRNVARPA 373 (597)
T ss_dssp CCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC---CCTTCCCSEEECCSSCEEHHHHHH-HTTTCCTTT
T ss_pred cCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCcC---hhhcCCCCEEEeeCCCCCChhHHH-HHHHHhhhc
Confidence 6777777777777777 34556677778888888888887543 566788889999999998876432 244555556
Q ss_pred ccCCcCCCCCcccC
Q 040925 446 LQGNMKLCGGIDEL 459 (833)
Q Consensus 446 l~~N~~~c~~~~~~ 459 (833)
+.++...|+.+...
T Consensus 374 ~~~~~~~C~~~~~~ 387 (597)
T 3oja_B 374 VDDADQHCKIDYQL 387 (597)
T ss_dssp BCCCCCCCCTTCEE
T ss_pred cccccccCCcchhc
Confidence 78888889875543
No 141
>3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive kinase, HER3, ATP-binding, cell membrane, membrane, nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB: 3lmg_A*
Probab=100.00 E-value=7.8e-39 Score=342.60 Aligned_cols=259 Identities=22% Similarity=0.341 Sum_probs=202.1
Q ss_pred cCCccCceeccCcceEEEEEEECCCceE----EEEEEeeccC-CcchhHHHHHHHHHhhcCCCccceEeeEeecCCCCCC
Q 040925 531 GEFSSSNMIGQGSFGYVYKGTLGEDEMI----VAVKVINLKY-KGASRSFVAECEALRNIRHRNLIKIITICSSTDFKGT 605 (833)
Q Consensus 531 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~----vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~ 605 (833)
++|++.+.||+|+||.||+|++..+++. ||+|.+.... ....+.+.+|+.++++++||||+++++++..
T Consensus 13 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~kv~~K~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~------ 86 (325)
T 3kex_A 13 TELRKLKVLGSGVFGTVHKGVWIPEGESIKIPVCIKVIEDKSGRQSFQAVTDHMLAIGSLDHAHIVRLLGLCPG------ 86 (325)
T ss_dssp TTEEEEEEEECCSSCEEEEEEECCTTCSCCEEEEEEEECCTTSCSCBCSCCHHHHHHHTCCCTTBCCEEEEECB------
T ss_pred hHceeeeeeeecCCceEEEEEEcCCCceEEEEEEEEeccccccHHHHHHHHHHHHHHhcCCCCCcCeEEEEEcC------
Confidence 4799999999999999999999877765 7778775332 2334678899999999999999999998743
Q ss_pred ceEeEEEEecCCCChhhhhccCCCccccccCCHHHHHHHHHHHHHHHHHHhhcCCCCceeeCCCCCCeeecCCCcEEEcc
Q 040925 606 DFKAFVFEYMENGSLKDWLHQSDDQVEVCKLSLIQRVNIAIDVASAMEYLHHHCQPPMVHGDLKPSNVLLDHDMVAHVCD 685 (833)
Q Consensus 606 ~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~gL~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kL~D 685 (833)
...++||||+++|+|.+++..... .+++..++.++.|++.||+|||+. +|+||||||+||+++.++.+||+|
T Consensus 87 ~~~~~v~e~~~~~~L~~~l~~~~~-----~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~Dikp~Nil~~~~~~~kl~D 158 (325)
T 3kex_A 87 SSLQLVTQYLPLGSLLDHVRQHRG-----ALGPQLLLNWGVQIAKGMYYLEEH---GMVHRNLAARNVLLKSPSQVQVAD 158 (325)
T ss_dssp SSEEEEEECCTTCBSHHHHHSSGG-----GSCTTHHHHHHHHHHHHHHHHHHT---TCCCSCCSSTTEEESSSSCEEECS
T ss_pred CccEEEEEeCCCCCHHHHHHHccc-----cCCHHHHHHHHHHHHHHHHHHHhC---CCCCCccchheEEECCCCeEEECC
Confidence 258899999999999999986532 689999999999999999999999 999999999999999999999999
Q ss_pred cccccccCcccccccccCCCccccccccccccCccccCCCCCCcccccccCCcCCCccccCCccHHHHHH-HhCCCcccc
Q 040925 686 FGLAKFLSDHQLDTAVKTPSSSIGLKGTVGYVAPEYGMGSEASMTGDIFTGRRPIDAVFNEGHSLHEFAK-TALPEKVME 764 (833)
Q Consensus 686 fG~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~s~~~~~~~~~~~g~~l~~~~~-~~~p~~~~~ 764 (833)
||+++........ .......||+.|+|||++.+..++.++|||| +|++++++++ +..|+....
T Consensus 159 fg~a~~~~~~~~~------~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~s----------lG~~l~el~~~g~~p~~~~~ 222 (325)
T 3kex_A 159 FGVADLLPPDDKQ------LLYSEAKTPIKWMALESIHFGKYTHQSDVWS----------YGVTVWELMTFGAEPYAGLR 222 (325)
T ss_dssp CSGGGGSCCCTTC------CC-----CCTTTSCHHHHHHCCCCHHHHHHH----------HHHHHHHHHTTSCCTTTTSC
T ss_pred CCcccccCccccc------ccccCCCCcccccChHHhccCCCChhhHhHH----------hHHHHHHHHhCCCCCccccC
Confidence 9999876543221 1122346888999999999889999999999 7888888888 777765321
Q ss_pred cccccchhhhccccchhhhhhhhchHHHHHHHHHHhhccCCCCCCCCCCHHHHHHHHHHhhhh
Q 040925 765 IVDPSLLMEVMTNNSMIQEDKRVKTEECLNAIIRTGVLCSMESPFERMDMRDVVAKLCHTRET 827 (833)
Q Consensus 765 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~i~~~ 827 (833)
.. .. ...+.... ....+..++..+.+++.+||..||++|||++|+++.|+.+.+.
T Consensus 223 ~~--~~-~~~~~~~~-----~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~el~~~l~~~~~~ 277 (325)
T 3kex_A 223 LA--EV-PDLLEKGE-----RLAQPQICTIDVYMVMVKCWMIDENIRPTFKELANEFTRMARD 277 (325)
T ss_dssp TT--HH-HHHHHTTC-----BCCCCTTBCTTTTHHHHHHTCSCTTTSCCHHHHHHHHHHHTTS
T ss_pred HH--HH-HHHHHcCC-----CCCCCCcCcHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHhc
Confidence 11 11 11111100 0011122345678999999999999999999999999998653
No 142
>2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer, transferase, serine/threonine-protein kinase, nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens}
Probab=100.00 E-value=2.5e-38 Score=344.11 Aligned_cols=249 Identities=18% Similarity=0.226 Sum_probs=196.3
Q ss_pred cCceeccCcceEEEEEEECCCceEEEEEEeeccCCcchhHHHHHHHHHhhcCCCccceEeeEeecCCCCCCceEeEEEEe
Q 040925 535 SSNMIGQGSFGYVYKGTLGEDEMIVAVKVINLKYKGASRSFVAECEALRNIRHRNLIKIITICSSTDFKGTDFKAFVFEY 614 (833)
Q Consensus 535 ~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~~lv~e~ 614 (833)
..+.||+|+||.||+|++..+++.||+|+++.......+.+.+|++++++++||||+++++++...+ ..++||||
T Consensus 93 ~~~~lG~G~~g~Vy~a~~~~~g~~vavK~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~-----~~~lv~E~ 167 (373)
T 2x4f_A 93 KTEILGGGRFGQVHKCEETATGLKLAAKIIKTRGMKDKEEVKNEISVMNQLDHANLIQLYDAFESKN-----DIVLVMEY 167 (373)
T ss_dssp EEEECC-----CEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHTTCCCTTBCCEEEEEECSS-----EEEEEEEC
T ss_pred cceEEecCcCEEEEEEEEcCCCcEEEEEEEcccccccHHHHHHHHHHHHhCCCCCCCeEEEEEEECC-----EEEEEEeC
Confidence 3578999999999999999899999999998655455678999999999999999999999976654 89999999
Q ss_pred cCCCChhhhhccCCCccccccCCHHHHHHHHHHHHHHHHHHhhcCCCCceeeCCCCCCeee--cCCCcEEEccccccccc
Q 040925 615 MENGSLKDWLHQSDDQVEVCKLSLIQRVNIAIDVASAMEYLHHHCQPPMVHGDLKPSNVLL--DHDMVAHVCDFGLAKFL 692 (833)
Q Consensus 615 ~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~gL~~LH~~~~~~ivH~Dlkp~NIll--~~~~~~kL~DfG~a~~~ 692 (833)
+++|+|.+++..... .+++..++.++.|++.||+|||+. +|+||||||+||++ +.++.+||+|||+++..
T Consensus 168 ~~~~~L~~~l~~~~~-----~l~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dlkp~NIll~~~~~~~~kl~DFG~a~~~ 239 (373)
T 2x4f_A 168 VDGGELFDRIIDESY-----NLTELDTILFMKQICEGIRHMHQM---YILHLDLKPENILCVNRDAKQIKIIDFGLARRY 239 (373)
T ss_dssp CTTCEEHHHHHHTGG-----GCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEEEETTTTEEEECCCSSCEEC
T ss_pred CCCCcHHHHHHhcCC-----CCCHHHHHHHHHHHHHHHHHHHHC---CcccccCCHHHEEEecCCCCcEEEEeCCCceec
Confidence 999999998875432 689999999999999999999999 99999999999999 56789999999999876
Q ss_pred CcccccccccCCCccccccccccccCccccCCCCCCcccccccCCcCCCccccCCccHHHHHHHhCCCcccccccccchh
Q 040925 693 SDHQLDTAVKTPSSSIGLKGTVGYVAPEYGMGSEASMTGDIFTGRRPIDAVFNEGHSLHEFAKTALPEKVMEIVDPSLLM 772 (833)
Q Consensus 693 ~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~s~~~~~~~~~~~g~~l~~~~~~~~p~~~~~~~~~~~~~ 772 (833)
..... .....||+.|+|||++.+..++.++|||| +|+++++++++..|+..... .....
T Consensus 240 ~~~~~---------~~~~~gt~~y~aPE~~~~~~~~~~~Diws----------lG~il~elltg~~pf~~~~~--~~~~~ 298 (373)
T 2x4f_A 240 KPREK---------LKVNFGTPEFLAPEVVNYDFVSFPTDMWS----------VGVIAYMLLSGLSPFLGDND--AETLN 298 (373)
T ss_dssp CTTCB---------CCCCCSSCTTCCHHHHTTCBCCHHHHHHH----------HHHHHHHHHHSSCTTCCSSH--HHHHH
T ss_pred CCccc---------cccccCCCcEeChhhccCCCCCcHHhHHH----------HHHHHHHHHhCCCCCCCCCH--HHHHH
Confidence 54321 12246999999999999999999999999 88899999999988753221 11111
Q ss_pred hhccccchhhhhhhhchHHHHHHHHHHhhccCCCCCCCCCCHHHHHHH
Q 040925 773 EVMTNNSMIQEDKRVKTEECLNAIIRTGVLCSMESPFERMDMRDVVAK 820 (833)
Q Consensus 773 ~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~ 820 (833)
.......... ......+++.+.+++.+||..||++|||++|+++.
T Consensus 299 ~i~~~~~~~~---~~~~~~~~~~~~~li~~~L~~dp~~Rps~~e~l~h 343 (373)
T 2x4f_A 299 NILACRWDLE---DEEFQDISEEAKEFISKLLIKEKSWRISASEALKH 343 (373)
T ss_dssp HHHHTCCCSC---SGGGTTSCHHHHHHHHTTSCSSGGGSCCHHHHHHS
T ss_pred HHHhccCCCC---hhhhccCCHHHHHHHHHHcCCChhhCCCHHHHhcC
Confidence 1111111000 11122346678999999999999999999999874
No 143
>2pmi_A Negative RE, cyclin-dependent protein kinase PHO85; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_A*
Probab=100.00 E-value=3.5e-38 Score=336.11 Aligned_cols=264 Identities=22% Similarity=0.288 Sum_probs=186.9
Q ss_pred hcCCccCceeccCcceEEEEEEECCCceEEEEEEeeccCC-cchhHHHHHHHHHhhcCCCccceEeeEeecCCCCCCceE
Q 040925 530 TGEFSSSNMIGQGSFGYVYKGTLGEDEMIVAVKVINLKYK-GASRSFVAECEALRNIRHRNLIKIITICSSTDFKGTDFK 608 (833)
Q Consensus 530 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~-~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~ 608 (833)
.++|++.+.||+|+||.||+|.+..+++.||+|+++.... ...+.+.+|++++++++||||+++++++...+ ..
T Consensus 4 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~-----~~ 78 (317)
T 2pmi_A 4 SSQFKQLEKLGNGTYATVYKGLNKTTGVYVALKEVKLDSEEGTPSTAIREISLMKELKHENIVRLYDVIHTEN-----KL 78 (317)
T ss_dssp ---------------CEEEEEECSSSCCEEEEEEEECCSTTCSCHHHHHHHHHHTTCCBTTBCCEEEEECCTT-----EE
T ss_pred ccceeEeeEECCCCCEEEEEEEECCCCcEEEEEEeecccccccHHHHHHHHHHHHhcCCCCcceEEEEEEECC-----eE
Confidence 4689999999999999999999998999999999975432 33467889999999999999999999976544 89
Q ss_pred eEEEEecCCCChhhhhccCCCccccccCCHHHHHHHHHHHHHHHHHHhhcCCCCceeeCCCCCCeeecCCCcEEEccccc
Q 040925 609 AFVFEYMENGSLKDWLHQSDDQVEVCKLSLIQRVNIAIDVASAMEYLHHHCQPPMVHGDLKPSNVLLDHDMVAHVCDFGL 688 (833)
Q Consensus 609 ~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~gL~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kL~DfG~ 688 (833)
++||||++ |+|.+++...........+++..+..++.|++.||+|||+. ||+||||||+||+++.++.+||+|||+
T Consensus 79 ~lv~e~~~-~~L~~~l~~~~~~~~~~~~~~~~~~~~~~qi~~aL~~lH~~---~ivH~Dlkp~NIl~~~~~~~kl~Dfg~ 154 (317)
T 2pmi_A 79 TLVFEFMD-NDLKKYMDSRTVGNTPRGLELNLVKYFQWQLLQGLAFCHEN---KILHRDLKPQNLLINKRGQLKLGDFGL 154 (317)
T ss_dssp EEEEECCC-CBHHHHHHHHHSSSCCCCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTCCEEECCCSS
T ss_pred EEEEEecC-CCHHHHHHhccccccccCCCHHHHHHHHHHHHHHHHHHHHC---CeeeCCCChHHeEEcCCCCEEECcCcc
Confidence 99999998 59999987643222222589999999999999999999999 999999999999999999999999999
Q ss_pred ccccCcccccccccCCCccccccccccccCccccCC-CCCCcccccccCCcCCCccccCCccHHHHHHHhCCCccccccc
Q 040925 689 AKFLSDHQLDTAVKTPSSSIGLKGTVGYVAPEYGMG-SEASMTGDIFTGRRPIDAVFNEGHSLHEFAKTALPEKVMEIVD 767 (833)
Q Consensus 689 a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Di~s~~~~~~~~~~~g~~l~~~~~~~~p~~~~~~~~ 767 (833)
++....... ......||+.|+|||++.+ ..++.++|||| .|+++++++++..|+......+
T Consensus 155 ~~~~~~~~~--------~~~~~~~t~~y~aPE~~~~~~~~~~~~Diws----------lG~il~el~~g~~pf~~~~~~~ 216 (317)
T 2pmi_A 155 ARAFGIPVN--------TFSSEVVTLWYRAPDVLMGSRTYSTSIDIWS----------CGCILAEMITGKPLFPGTNDEE 216 (317)
T ss_dssp CEETTSCCC--------CCCCCCSCCTTCCHHHHTTCCCCCTHHHHHH----------HHHHHHHHHHSSCSCCCSSHHH
T ss_pred ceecCCCcc--------cCCCCcccccccCchHhhCCCCCCcHHHHHH----------HHHHHHHHHhCCCCCCCCChHH
Confidence 986543211 1123468999999999876 46899999999 7888888888887764211100
Q ss_pred -------------ccchhhhcc---ccchh---------hhhhhhchHHHHHHHHHHhhccCCCCCCCCCCHHHHHHH
Q 040925 768 -------------PSLLMEVMT---NNSMI---------QEDKRVKTEECLNAIIRTGVLCSMESPFERMDMRDVVAK 820 (833)
Q Consensus 768 -------------~~~~~~~~~---~~~~~---------~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~ 820 (833)
......... ..... ..........++..+.+++.+||+.||++|||++|+++.
T Consensus 217 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rpt~~e~l~h 294 (317)
T 2pmi_A 217 QLKLIFDIMGTPNESLWPSVTKLPKYNPNIQQRPPRDLRQVLQPHTKEPLDGNLMDFLHGLLQLNPDMRLSAKQALHH 294 (317)
T ss_dssp HHHHHHHHHCSCCTTTCGGGGGCTTCCTTCCCCCCCCSHHHHGGGCSSCCCHHHHHHHHHHSCSSGGGSCCHHHHTTS
T ss_pred HHHHHHHHhCCCChhHhhhhhhhhhcccccccccchhHHHhhcccccccCCHHHHHHHHHHCCCCcccCCCHHHHhCC
Confidence 000000000 00000 000000111245678999999999999999999999864
No 144
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=7.1e-37 Score=336.39 Aligned_cols=308 Identities=19% Similarity=0.201 Sum_probs=249.8
Q ss_pred CcEEEcCCCcCcccCCccccCCCCCCEEEccCCcccccCCccCCCCCCCCEEEcCCCcccccCCccccCCCCCcEEECCC
Q 040925 1 LQTLAVNDNYLTGQLPDFVGNLSDLEVIRIMGNSLGGKIPTTLGLLRNLVSLNVAENKFSGMFPRSICNISSLELIQLAL 80 (833)
Q Consensus 1 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~ 80 (833)
|++|++++|.++...+..|..+++|++|++++|++++..+..|..+++|++|+|++|+++++.|..|.++++|++|+|++
T Consensus 47 l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 126 (390)
T 3o6n_A 47 QKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLER 126 (390)
T ss_dssp CSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred ceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCC
Confidence 58899999999966666789999999999999999988888999999999999999999988899999999999999999
Q ss_pred cccccccCchhhcCCCCccEEEccCCcceeeCCccccCCCCCcEEEcccCccccccCcCccCCCcCceEecccccCCCCC
Q 040925 81 NRFSGNLPFDIVVNLPNLKALAIGGNNFFGSIPYSLSNASNLELLDLSVNQFKGNVSIDFSSLKNLLWLNLEQNNLGTGT 160 (833)
Q Consensus 81 N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 160 (833)
|+++ .+|..+|.++++|++|+|++|.+++..|..|.++++|++|++++|+++.+ .+..+++|+.|++++|.++.+
T Consensus 127 n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l~~~- 201 (390)
T 3o6n_A 127 NDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLSTL- 201 (390)
T ss_dssp SCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCCSEE-
T ss_pred CccC-cCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeeccccccccc-
Confidence 9998 89999999999999999999999988888999999999999999999976 367789999999999998653
Q ss_pred CCCcccccccCCCCCCCEEEccCCcCcccCChhHhhhcccccEEEccCccccccCChhhhcCCCCCeEeccCCcccccCC
Q 040925 161 ATDLDFVTFLTNCSSLKALSLADNQFGGELPHSIANLSSTVINFGIGRNQISGTIPPGIRNLVNLIGFGAEENQLHGTIP 240 (833)
Q Consensus 161 ~~~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 240 (833)
...++|++|++++|+++. +|. ...++|+.|++++|++++.
T Consensus 202 ----------~~~~~L~~L~l~~n~l~~-~~~---------------------------~~~~~L~~L~l~~n~l~~~-- 241 (390)
T 3o6n_A 202 ----------AIPIAVEELDASHNSINV-VRG---------------------------PVNVELTILKLQHNNLTDT-- 241 (390)
T ss_dssp ----------ECCSSCSEEECCSSCCCE-EEC---------------------------CCCSSCCEEECCSSCCCCC--
T ss_pred ----------CCCCcceEEECCCCeeee-ccc---------------------------cccccccEEECCCCCCccc--
Confidence 344689999999998872 111 1125677777777777743
Q ss_pred ccccCCCCCCEEEcccccCcccCCccccCCCCCCeEEeecccccCCCCCCCCCCCccceeecCCceecccCCcccccccc
Q 040925 241 DAIGELKNLQKLCLFRNFLQGRIPSGLGNLTKLANLELSSNSLQGNIPSSLGNCQNLMSFTASQNKLTGALPHQLLSITT 320 (833)
Q Consensus 241 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~ 320 (833)
..+..+++|++|+|++|.+++..|..|.++++|++|+|++|++++ +|..+..+++|+.|++++|+++
T Consensus 242 ~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~------------ 308 (390)
T 3o6n_A 242 AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL------------ 308 (390)
T ss_dssp GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC------------
T ss_pred HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce------------
Confidence 467777788888888888777777777777778888888777764 4445556666666555555554
Q ss_pred cceeeecCCCccCCCCCcccccCCCcCEEeccCCcCCCCCCccccCCCCCcEEeecCCccccc
Q 040925 321 LSLYLDLSNNLLNGSLPLQVGHLKNLVILDISSNQFSGVIPGTLSTCVCLEYLDISSNSFHGV 383 (833)
Q Consensus 321 ll~~L~ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 383 (833)
.+|..+..+++|+.|++++|++++.. +..+++|+.|++++|+++..
T Consensus 309 --------------~~~~~~~~l~~L~~L~L~~N~i~~~~---~~~~~~L~~L~l~~N~~~~~ 354 (390)
T 3o6n_A 309 --------------HVERNQPQFDRLENLYLDHNSIVTLK---LSTHHTLKNLTLSHNDWDCN 354 (390)
T ss_dssp --------------CCGGGHHHHTTCSEEECCSSCCCCCC---CCTTCCCSEEECCSSCEEHH
T ss_pred --------------ecCccccccCcCCEEECCCCccceeC---chhhccCCEEEcCCCCccch
Confidence 33444556777888888888887542 66777888888888888753
No 145
>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}
Probab=100.00 E-value=3.6e-38 Score=346.64 Aligned_cols=269 Identities=21% Similarity=0.280 Sum_probs=210.6
Q ss_pred cCCccCceeccCcceEEEEEEECCCceEEEEEEeeccC-CcchhHHHHHHHHHhhcCCCccceEeeEeecCCCCCCceEe
Q 040925 531 GEFSSSNMIGQGSFGYVYKGTLGEDEMIVAVKVINLKY-KGASRSFVAECEALRNIRHRNLIKIITICSSTDFKGTDFKA 609 (833)
Q Consensus 531 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~~ 609 (833)
++|++.+.||+|+||.||+|++..+++.||||+++... ....+.+.+|++++++++||||+++++++.... ....+
T Consensus 9 ~~y~i~~~LG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~---~~~~~ 85 (396)
T 4eut_A 9 HLWLLSDILGQGATANVFRGRHKKTGDLFAIKVFNNISFLRPVDVQMREFEVLKKLNHKNIVKLFAIEEETT---TRHKV 85 (396)
T ss_dssp EEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECGGGGGSCHHHHHHHHHHHHHCCCTTBCCEEEEEECTT---TCCEE
T ss_pred CceEEEEEEEcCCCeEEEEEEECCCCcEEEEEEeccccccchHHHHHHHHHHHHhcCCCCCCeEEEeeccCC---CCeeE
Confidence 57999999999999999999999999999999997432 234567889999999999999999999976543 34679
Q ss_pred EEEEecCCCChhhhhccCCCccccccCCHHHHHHHHHHHHHHHHHHhhcCCCCceeeCCCCCCeee----cCCCcEEEcc
Q 040925 610 FVFEYMENGSLKDWLHQSDDQVEVCKLSLIQRVNIAIDVASAMEYLHHHCQPPMVHGDLKPSNVLL----DHDMVAHVCD 685 (833)
Q Consensus 610 lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~gL~~LH~~~~~~ivH~Dlkp~NIll----~~~~~~kL~D 685 (833)
+||||+++|+|.+++...... ..+++..++.++.|++.||+|||+. +|+||||||+||++ +.++.+||+|
T Consensus 86 lv~e~~~~g~L~~~l~~~~~~---~~l~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dlkp~NIll~~~~~~~~~~kL~D 159 (396)
T 4eut_A 86 LIMEFCPCGSLYTVLEEPSNA---YGLPESEFLIVLRDVVGGMNHLREN---GIVHRNIKPGNIMRVIGEDGQSVYKLTD 159 (396)
T ss_dssp EEECCCTTEEHHHHTTSGGGT---TCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEEEECTTSCEEEEECC
T ss_pred EEEecCCCCCHHHHHHhhhcc---cCCCHHHHHHHHHHHHHHHHHHHHC---CEEECCcCHHHEEEeecCCCceeEEEec
Confidence 999999999999999865421 1389999999999999999999999 99999999999999 7778899999
Q ss_pred cccccccCcccccccccCCCccccccccccccCccccCC--------CCCCcccccccCCcCCCccccCCccHHHHHHHh
Q 040925 686 FGLAKFLSDHQLDTAVKTPSSSIGLKGTVGYVAPEYGMG--------SEASMTGDIFTGRRPIDAVFNEGHSLHEFAKTA 757 (833)
Q Consensus 686 fG~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~--------~~~~~~~Di~s~~~~~~~~~~~g~~l~~~~~~~ 757 (833)
||+|+....... .....||+.|+|||++.+ ..++.++|||| +|+++++++++.
T Consensus 160 FG~a~~~~~~~~---------~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~DiwS----------lG~il~el~tg~ 220 (396)
T 4eut_A 160 FGAARELEDDEQ---------FVSLYGTEEYLHPDMYERAVLRKDHQKKYGATVDLWS----------IGVTFYHAATGS 220 (396)
T ss_dssp GGGCEECCCGGG---------SSCSSSCCTTCCHHHHHHHCC--CHHHHHHHHHHHHH----------HHHHHHHHHHSS
T ss_pred CCCceEccCCCc---------cccccCCccccCHHHhhccccccccccCCCcHHHHHH----------HHHHHHHHHHCC
Confidence 999987654321 123469999999998764 56788999999 788888999988
Q ss_pred CCCcccccc--cccchhhhccccch------------------hhhhhhhchHHHHHHHHHHhhccCCCCCCCCCCHHHH
Q 040925 758 LPEKVMEIV--DPSLLMEVMTNNSM------------------IQEDKRVKTEECLNAIIRTGVLCSMESPFERMDMRDV 817 (833)
Q Consensus 758 ~p~~~~~~~--~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~ei 817 (833)
.|+...... .............. ..+............+.+++.+||+.||++|||++|+
T Consensus 221 ~Pf~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~ll~~~L~~dP~~R~s~~e~ 300 (396)
T 4eut_A 221 LPFRPFEGPRRNKEVMYKIITGKPSGAISGVQKAENGPIDWSGDMPVSCSLSRGLQVLLTPVLANILEADQEKCWGFDQF 300 (396)
T ss_dssp CSEECTTCTTTCHHHHHHHHHSCCTTCCEEEECSTTCCEEEESSCCTTCSSCHHHHHHHHHHHHHHSCCCTTTSCCHHHH
T ss_pred CCCCCCCcccchHHHHHHHhcCCCcccchhheeccCCCcccCccCCcccccchHHHhhchHHHHHhhccChhhhccHHHH
Confidence 886521110 01111111110000 0001112236678889999999999999999999999
Q ss_pred HHHHHHhhhh
Q 040925 818 VAKLCHTRET 827 (833)
Q Consensus 818 l~~L~~i~~~ 827 (833)
++.+..+.+.
T Consensus 301 l~~l~~il~~ 310 (396)
T 4eut_A 301 FAETSDILHR 310 (396)
T ss_dssp HHHHHHHHTC
T ss_pred HHHHHHHhhc
Confidence 9999888653
No 146
>2v62_A Serine/threonine-protein kinase VRK2; transferase, ATP-binding, membrane, nucleotide-binding, TRAN; 1.7A {Homo sapiens}
Probab=100.00 E-value=1.2e-38 Score=344.11 Aligned_cols=273 Identities=18% Similarity=0.222 Sum_probs=203.1
Q ss_pred cCCccCceeccCcceEEEEEEECC---CceEEEEEEeeccCCc-----------chhHHHHHHHHHhhcCCCccceEeeE
Q 040925 531 GEFSSSNMIGQGSFGYVYKGTLGE---DEMIVAVKVINLKYKG-----------ASRSFVAECEALRNIRHRNLIKIITI 596 (833)
Q Consensus 531 ~~y~~~~~lg~G~~g~Vy~~~~~~---~~~~vavK~~~~~~~~-----------~~~~~~~E~~~l~~l~h~niv~~~~~ 596 (833)
++|++.+.||+|+||.||+|++.. ++..||+|++...... ....+.+|+..++.++||||++++++
T Consensus 37 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~~~~l~h~ni~~~~~~ 116 (345)
T 2v62_A 37 NQWVLGKKIGSGGFGLIYLAFPTNKPEKDARHVVKVEYQENGPLFSELKFYQRVAKKDCIKKWIERKQLDYLGIPLFYGS 116 (345)
T ss_dssp CEEEEEEEC------CEEEEEESSSCGGGCCEEEEEEECC-CHHHHHHHHHHHHCCHHHHHHHHHHHTCSCCCCCCEEEE
T ss_pred ceEEEEeeEeecCCeEEEEEEecCCCCccceEEEEeeecCCcchHHHHHHHHHHhhhHHHHHHHhhccccccCcceeecc
Confidence 579999999999999999999987 7889999998754321 12346778889999999999999999
Q ss_pred eecCCCCCCceEeEEEEecCCCChhhhhccCCCccccccCCHHHHHHHHHHHHHHHHHHhhcCCCCceeeCCCCCCeeec
Q 040925 597 CSSTDFKGTDFKAFVFEYMENGSLKDWLHQSDDQVEVCKLSLIQRVNIAIDVASAMEYLHHHCQPPMVHGDLKPSNVLLD 676 (833)
Q Consensus 597 ~~~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~gL~~LH~~~~~~ivH~Dlkp~NIll~ 676 (833)
+... +.+....++||||+ +++|.+++...+ .+++.+++.++.|++.||+|||+. +|+||||||+||+++
T Consensus 117 ~~~~-~~~~~~~~lv~e~~-~~~L~~~l~~~~------~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dlkp~NIll~ 185 (345)
T 2v62_A 117 GLTE-FKGRSYRFMVMERL-GIDLQKISGQNG------TFKKSTVLQLGIRMLDVLEYIHEN---EYVHGDIKAANLLLG 185 (345)
T ss_dssp EEEE-SSSCEEEEEEEECE-EEEHHHHCBGGG------BCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEE
T ss_pred cccc-cCCCcEEEEEEecc-CCCHHHHHHhcC------CCCHHHHHHHHHHHHHHHHHHHhC---CeeCCCcCHHHEEEc
Confidence 8763 23456899999999 899999998654 689999999999999999999999 999999999999999
Q ss_pred CCC--cEEEcccccccccCcccccccccCCCccccccccccccCccccCCCCCCcccccccCCcCCCccccCCccHHHHH
Q 040925 677 HDM--VAHVCDFGLAKFLSDHQLDTAVKTPSSSIGLKGTVGYVAPEYGMGSEASMTGDIFTGRRPIDAVFNEGHSLHEFA 754 (833)
Q Consensus 677 ~~~--~~kL~DfG~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~s~~~~~~~~~~~g~~l~~~~ 754 (833)
.++ .+||+|||+|+.+......... .........||+.|+|||++.+..++.++|||| +|+++++++
T Consensus 186 ~~~~~~~kL~Dfg~a~~~~~~~~~~~~-~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~s----------lG~il~ell 254 (345)
T 2v62_A 186 YKNPDQVYLADYGLSYRYCPNGNHKQY-QENPRKGHNGTIEFTSLDAHKGVALSRRSDVEI----------LGYCMLRWL 254 (345)
T ss_dssp SSSTTSEEECCCTTCEESSGGGCCCCC-CCCGGGCSCSCTTTCCHHHHHTCCCCHHHHHHH----------HHHHHHHHH
T ss_pred cCCCCcEEEEeCCCceecccccccccc-hhccccccCCCccccCHHHhcCCCCCchhhHHH----------HHHHHHHHH
Confidence 887 9999999999877543221111 111223457999999999999999999999999 888999999
Q ss_pred HHhCCCcccccccccchhhhccccc-hhhhh--hhhchHHHHHHHHHHhhccCCCCCCCCCCHHHHHHHHHHhhh
Q 040925 755 KTALPEKVMEIVDPSLLMEVMTNNS-MIQED--KRVKTEECLNAIIRTGVLCSMESPFERMDMRDVVAKLCHTRE 826 (833)
Q Consensus 755 ~~~~p~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~i~~ 826 (833)
++..|+.... .+............ ..... .......+++.+.+++.+||..||++|||+++|++.|+.+..
T Consensus 255 ~g~~pf~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~L~~~~~ 328 (345)
T 2v62_A 255 CGKLPWEQNL-KDPVAVQTAKTNLLDELPQSVLKWAPSGSSCCEIAQFLVCAHSLAYDEKPNYQALKKILNPHGI 328 (345)
T ss_dssp HSSCTTGGGT-TCHHHHHHHHHHHHHTTTHHHHHHSCTTSCCHHHHHHHHHHHTCCTTCCCCHHHHHHHHCTTCC
T ss_pred hCCCCccccc-cccHHHHHHHHhhcccccHHHHhhccccccHHHHHHHHHHHhhcCcccCCCHHHHHHHHhccCC
Confidence 9998874211 11111000000000 00000 000011355689999999999999999999999999987653
No 147
>3kn6_A Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1, MSK, ATP-binding, metal-binding, NUCL binding, serine/threonine-protein kinase, transferase; 2.00A {Homo sapiens} PDB: 3kn5_A
Probab=100.00 E-value=1.6e-38 Score=339.49 Aligned_cols=250 Identities=19% Similarity=0.231 Sum_probs=181.5
Q ss_pred CCccC---ceeccCcceEEEEEEECCCceEEEEEEeeccCCcchhHHHHHHHHHhhcC-CCccceEeeEeecCCCCCCce
Q 040925 532 EFSSS---NMIGQGSFGYVYKGTLGEDEMIVAVKVINLKYKGASRSFVAECEALRNIR-HRNLIKIITICSSTDFKGTDF 607 (833)
Q Consensus 532 ~y~~~---~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~-h~niv~~~~~~~~~~~~~~~~ 607 (833)
+|++. +.||+|+||.||+|++..+++.||||++... ....+.+|+.+++.+. ||||+++++++.+.. .
T Consensus 9 ~y~~~~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~---~~~~~~~e~~~l~~l~~h~niv~~~~~~~~~~-----~ 80 (325)
T 3kn6_A 9 HYDLDLKDKPLGEGSFSICRKCVHKKSNQAFAVKIISKR---MEANTQKEITALKLCEGHPNIVKLHEVFHDQL-----H 80 (325)
T ss_dssp HEEECTTSCCSEEETTEEEEEEEETTTCCEEEEEEEEGG---GHHHHHHHHHHHHHTTTCTTBCCEEEEEECSS-----E
T ss_pred ccccccCCCccccCCCeEEEEEEECCCCCEEEEEEEChh---hhhhHHHHHHHHHHhcCCCCeeEEEEEEEcCC-----E
Confidence 45543 7899999999999999999999999999632 4467889999999997 999999999976554 8
Q ss_pred EeEEEEecCCCChhhhhccCCCccccccCCHHHHHHHHHHHHHHHHHHhhcCCCCceeeCCCCCCeeecCCC---cEEEc
Q 040925 608 KAFVFEYMENGSLKDWLHQSDDQVEVCKLSLIQRVNIAIDVASAMEYLHHHCQPPMVHGDLKPSNVLLDHDM---VAHVC 684 (833)
Q Consensus 608 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~gL~~LH~~~~~~ivH~Dlkp~NIll~~~~---~~kL~ 684 (833)
.++||||+++|+|.+++.... .+++.+++.++.|++.||+|||+. +|+||||||+||+++.++ .+||+
T Consensus 81 ~~lv~e~~~~~~L~~~l~~~~------~~~~~~~~~i~~qi~~~l~~LH~~---~ivH~Dlkp~NIll~~~~~~~~~kl~ 151 (325)
T 3kn6_A 81 TFLVMELLNGGELFERIKKKK------HFSETEASYIMRKLVSAVSHMHDV---GVVHRDLKPENLLFTDENDNLEIKII 151 (325)
T ss_dssp EEEEECCCCSCBHHHHHHHCS------CCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEEEC----CEEEEC
T ss_pred EEEEEEccCCCcHHHHHHhcC------CCCHHHHHHHHHHHHHHHHHHHHC---CCeecCCCHHHEEEecCCCcccEEEe
Confidence 999999999999999998754 689999999999999999999999 999999999999998766 89999
Q ss_pred ccccccccCcccccccccCCCccccccccccccCccccCCCCCCcccccccCCcCCCccccCCccHHHHHHHhCCCcccc
Q 040925 685 DFGLAKFLSDHQLDTAVKTPSSSIGLKGTVGYVAPEYGMGSEASMTGDIFTGRRPIDAVFNEGHSLHEFAKTALPEKVME 764 (833)
Q Consensus 685 DfG~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~s~~~~~~~~~~~g~~l~~~~~~~~p~~~~~ 764 (833)
|||+++....... ......||+.|+|||++.+..++.++|||| .|+++++++++..|+....
T Consensus 152 Dfg~a~~~~~~~~--------~~~~~~~t~~y~aPE~~~~~~~~~~~Diws----------lG~il~~ll~g~~pf~~~~ 213 (325)
T 3kn6_A 152 DFGFARLKPPDNQ--------PLKTPCFTLHYAAPELLNQNGYDESCDLWS----------LGVILYTMLSGQVPFQSHD 213 (325)
T ss_dssp CCTTCEECCC------------------------------CCCCHHHHHHH----------HHHHHHHHHHSSCTTC---
T ss_pred ccccceecCCCCC--------cccccCCCcCccCHHHhcCCCCCCccchHH----------HHHHHHHHHhCCCCCCCCc
Confidence 9999986543221 112346899999999999999999999999 8889999999998876322
Q ss_pred ccc-----ccchhhhccccchhhhhhhhchHHHHHHHHHHhhccCCCCCCCCCCHHHHHH
Q 040925 765 IVD-----PSLLMEVMTNNSMIQEDKRVKTEECLNAIIRTGVLCSMESPFERMDMRDVVA 819 (833)
Q Consensus 765 ~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~ 819 (833)
... ............. ........+++.+.+++.+||..||++|||++|+++
T Consensus 214 ~~~~~~~~~~~~~~i~~~~~~---~~~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~ell~ 270 (325)
T 3kn6_A 214 RSLTCTSAVEIMKKIKKGDFS---FEGEAWKNVSQEAKDLIQGLLTVDPNKRLKMSGLRY 270 (325)
T ss_dssp ----CCCHHHHHHHHTTTCCC---CCSHHHHTSCHHHHHHHHHHHCCCTTTCCCTTTSTT
T ss_pred cccccccHHHHHHHHHcCCCC---CCcccccCCCHHHHHHHHHHCCCChhHCCCHHHHhc
Confidence 110 0011111111110 011112335678899999999999999999999874
No 148
>3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP binding, phosphorylation, intracellular, transferase-transferase inhibitor complex; HET: IAQ; 1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*
Probab=100.00 E-value=2.5e-38 Score=328.95 Aligned_cols=258 Identities=25% Similarity=0.379 Sum_probs=206.4
Q ss_pred hcCCccCceeccCcceEEEEEEECCCceEEEEEEeeccCCcchhHHHHHHHHHhhcCCCccceEeeEeecCCCCCCceEe
Q 040925 530 TGEFSSSNMIGQGSFGYVYKGTLGEDEMIVAVKVINLKYKGASRSFVAECEALRNIRHRNLIKIITICSSTDFKGTDFKA 609 (833)
Q Consensus 530 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~~ 609 (833)
.++|++.+.||+|+||.||+|++. +++.||+|+++.... ..+.+.+|++++++++||||+++++++...+ ..+
T Consensus 7 ~~~y~~~~~lg~G~~g~V~~~~~~-~~~~vaiK~~~~~~~-~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~-----~~~ 79 (267)
T 3t9t_A 7 PSELTFVQEIGSGQFGLVHLGYWL-NKDKVAIKTIREGAM-SEEDFIEEAEVMMKLSHPKLVQLYGVCLEQA-----PIC 79 (267)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEET-TTEEEEEEEECTTTB-CHHHHHHHHHHHHTCCCTTBCCEEEEECSSS-----SCE
T ss_pred hhheeeeeEecCCCceeEEEEEec-CCCeEEEEEccccCC-CHHHHHHHHHHHHhCCCCCEeeEEEEEccCC-----CeE
Confidence 457999999999999999999997 678899999975432 3467999999999999999999999976544 789
Q ss_pred EEEEecCCCChhhhhccCCCccccccCCHHHHHHHHHHHHHHHHHHhhcCCCCceeeCCCCCCeeecCCCcEEEcccccc
Q 040925 610 FVFEYMENGSLKDWLHQSDDQVEVCKLSLIQRVNIAIDVASAMEYLHHHCQPPMVHGDLKPSNVLLDHDMVAHVCDFGLA 689 (833)
Q Consensus 610 lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~gL~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kL~DfG~a 689 (833)
+||||+++|+|.+++..... .+++..++.++.|++.||+|||+. +|+||||||+||+++.++.+||+|||++
T Consensus 80 lv~e~~~~~~L~~~~~~~~~-----~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dl~p~Nili~~~~~~kl~dfg~~ 151 (267)
T 3t9t_A 80 LVTEFMEHGCLSDYLRTQRG-----LFAAETLLGMCLDVCEGMAYLEEA---CVIHRDLAARNCLVGENQVIKVSDFGMT 151 (267)
T ss_dssp EEECCCTTCBHHHHHHHTTT-----CCCHHHHHHHHHHHHHHHHHHHHT---TCCCSSCCGGGEEECGGGCEEECCTTGG
T ss_pred EEEeCCCCCcHHHHHhhCcc-----cCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCchheEEECCCCCEEEcccccc
Confidence 99999999999999976532 589999999999999999999999 9999999999999999999999999999
Q ss_pred cccCcccccccccCCCccccccccccccCccccCCCCCCcccccccCCcCCCccccCCccHHHHHH-HhCCCcccccccc
Q 040925 690 KFLSDHQLDTAVKTPSSSIGLKGTVGYVAPEYGMGSEASMTGDIFTGRRPIDAVFNEGHSLHEFAK-TALPEKVMEIVDP 768 (833)
Q Consensus 690 ~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~s~~~~~~~~~~~g~~l~~~~~-~~~p~~~~~~~~~ 768 (833)
.......... .....||+.|+|||++.+..++.++|||| .|++++++++ +..|+..... .
T Consensus 152 ~~~~~~~~~~-------~~~~~~~~~y~aPE~~~~~~~~~~~Di~s----------lG~il~~l~~~g~~p~~~~~~--~ 212 (267)
T 3t9t_A 152 RFVLDDQYTS-------STGTKFPVKWASPEVFSFSRYSSKSDVWS----------FGVLMWEVFSEGKIPYENRSN--S 212 (267)
T ss_dssp GGBCCHHHHS-------TTSTTCCGGGCCHHHHHHCCCCHHHHHHH----------HHHHHHHHHTTSCCTTTTCCH--H
T ss_pred cccccccccc-------cccccccccccChhhhcCCCccchhchhh----------hHHHHHHHhccCCCCCCCCCH--H
Confidence 8765432211 11235788999999998888999999999 7778888887 6767642211 1
Q ss_pred cchhhhccccchhhhhhhhchHHHHHHHHHHhhccCCCCCCCCCCHHHHHHHHHHhhhh
Q 040925 769 SLLMEVMTNNSMIQEDKRVKTEECLNAIIRTGVLCSMESPFERMDMRDVVAKLCHTRET 827 (833)
Q Consensus 769 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~i~~~ 827 (833)
........... ...+..++..+.+++.+||..||++|||++|+++.|+++.+.
T Consensus 213 ~~~~~i~~~~~------~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~ll~~L~~l~~~ 265 (267)
T 3t9t_A 213 EVVEDISTGFR------LYKPRLASTHVYQIMNHCWRERPEDRPAFSRLLRQLAEIAES 265 (267)
T ss_dssp HHHHHHHTTCC------CCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHC
T ss_pred HHHHHHhcCCc------CCCCccCcHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHhc
Confidence 11111111100 011122356788999999999999999999999999998764
No 149
>2eue_A Carbon catabolite derepressing protein kinase; kinase domain; 2.20A {Saccharomyces cerevisiae} PDB: 3fam_A 3hyh_A 3dae_A 2fh9_A 3mn3_A
Probab=100.00 E-value=2.8e-38 Score=330.02 Aligned_cols=248 Identities=27% Similarity=0.373 Sum_probs=181.4
Q ss_pred hcCCccCceeccCcceEEEEEEECCCceEEEEEEeeccC---CcchhHHHHHHHHHhhcCCCccceEeeEeecCCCCCCc
Q 040925 530 TGEFSSSNMIGQGSFGYVYKGTLGEDEMIVAVKVINLKY---KGASRSFVAECEALRNIRHRNLIKIITICSSTDFKGTD 606 (833)
Q Consensus 530 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~ 606 (833)
.++|++.+.||+|+||.||+|++..+++.||+|+++... ....+.+.+|++++++++||||+++++++...+
T Consensus 12 ~~~y~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~----- 86 (275)
T 2eue_A 12 IGNYQIVKTLGEGSFAKVKLAYHTTTGQKVALKIINKKVLAKSDMQGRIEREISYLRLLRHPHIIKLYDVIKSKD----- 86 (275)
T ss_dssp CCCBCCCC---------EEEEECTTTCCEEEEEEECSCC-----CHHHHHHHHHHHHHCCCTTBCCEEEEEECSS-----
T ss_pred ccceEEEEEEEcCCCEEEEEEEECCCCCEEEEEEEEhhhcchHHHHHHHHHHHHHHHhCCCCCeEEEEEEEecCC-----
Confidence 368999999999999999999999999999999996542 223467899999999999999999999976554
Q ss_pred eEeEEEEecCCCChhhhhccCCCccccccCCHHHHHHHHHHHHHHHHHHhhcCCCCceeeCCCCCCeeecCCCcEEEccc
Q 040925 607 FKAFVFEYMENGSLKDWLHQSDDQVEVCKLSLIQRVNIAIDVASAMEYLHHHCQPPMVHGDLKPSNVLLDHDMVAHVCDF 686 (833)
Q Consensus 607 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~gL~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kL~Df 686 (833)
..++||||+ ++++.+++.... .+++.+++.++.|++.||+|||+. ||+||||||+||+++.++.+||+||
T Consensus 87 ~~~lv~e~~-~~~l~~~~~~~~------~~~~~~~~~~~~~i~~~l~~LH~~---~i~H~dikp~Nil~~~~~~~kl~Df 156 (275)
T 2eue_A 87 EIIMVIEYA-GNELFDYIVQRD------KMSEQEARRFFQQIISAVEYCHRH---KIVHRDLKPENLLLDEHLNVKIADF 156 (275)
T ss_dssp CEEEEEECC-CEEHHHHHHTSS------SCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCSGGGEEECTTSCEEECCS
T ss_pred eEEEEehhc-CCcHHHHHHhcC------CCCHHHHHHHHHHHHHHHHHHHHC---CCeeccCChHhEEECCCCCEEEeec
Confidence 789999999 678988887654 689999999999999999999999 9999999999999999999999999
Q ss_pred ccccccCcccccccccCCCccccccccccccCccccCCCCC-CcccccccCCcCCCccccCCccHHHHHHHhCCCccccc
Q 040925 687 GLAKFLSDHQLDTAVKTPSSSIGLKGTVGYVAPEYGMGSEA-SMTGDIFTGRRPIDAVFNEGHSLHEFAKTALPEKVMEI 765 (833)
Q Consensus 687 G~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~-~~~~Di~s~~~~~~~~~~~g~~l~~~~~~~~p~~~~~~ 765 (833)
|++........ .....||+.|+|||++.+..+ +.++|||| .|+++++++++..|+.....
T Consensus 157 g~~~~~~~~~~---------~~~~~~t~~y~aPE~~~~~~~~~~~~Di~s----------lG~il~~l~~g~~pf~~~~~ 217 (275)
T 2eue_A 157 GLSNIMTDGNF---------LKTSCGSPNYAAPEVISGKLYAGPEVDVWS----------CGVILYVMLCRRLPFDDESI 217 (275)
T ss_dssp SCC------------------------CTTCCHHHHCC-----THHHHHH----------HHHHHHHHHHSSCSSCCSSH
T ss_pred ccceeccCccc---------ccCCCCCcCcCCceeeeCCCCCCcccchHH----------HHHHHHHHHhCCCCCCCCCH
Confidence 99986544321 122459999999999888765 78999999 88899999999988753221
Q ss_pred ccccchhhhccccchhhhhhhhchHHHHHHHHHHhhccCCCCCCCCCCHHHHHHH
Q 040925 766 VDPSLLMEVMTNNSMIQEDKRVKTEECLNAIIRTGVLCSMESPFERMDMRDVVAK 820 (833)
Q Consensus 766 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~ 820 (833)
........... ...+..+++.+.+++.+||+.||++|||++|+++.
T Consensus 218 --~~~~~~~~~~~-------~~~~~~~~~~~~~li~~~l~~dP~~Rps~~e~l~h 263 (275)
T 2eue_A 218 --PVLFKNISNGV-------YTLPKFLSPGAAGLIKRMLIVNPLNRISIHEIMQD 263 (275)
T ss_dssp --HHHHHHHHHTC-------CCCCTTSCHHHHHHHHHHSCSSGGGSCCHHHHTTC
T ss_pred --HHHHHHHHhCC-------CCCCccCCHHHHHHHHHHhhcCHhHCCCHHHHhhC
Confidence 11111111110 01122345678899999999999999999999764
No 150
>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C
Probab=100.00 E-value=7.5e-38 Score=343.68 Aligned_cols=256 Identities=19% Similarity=0.242 Sum_probs=195.5
Q ss_pred hcCCccC-ceeccCcceEEEEEEECCCceEEEEEEeeccCCcchhHHHHHHHHHhhc-CCCccceEeeEeecCCCCCCce
Q 040925 530 TGEFSSS-NMIGQGSFGYVYKGTLGEDEMIVAVKVINLKYKGASRSFVAECEALRNI-RHRNLIKIITICSSTDFKGTDF 607 (833)
Q Consensus 530 ~~~y~~~-~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~~~~~~~~~~~~~~~~ 607 (833)
.++|.+. +.||+|+||+||+|++..+++.||||+++. ...+.+|++++.++ +||||+++++++... +.+...
T Consensus 60 ~~~y~~~~~~LG~G~~g~V~~~~~~~~~~~vAiK~~~~-----~~~~~~E~~~~~~~~~hp~iv~l~~~~~~~-~~~~~~ 133 (400)
T 1nxk_A 60 IDDYKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQD-----CPKARREVELHWRASQCPHIVRIVDVYENL-YAGRKC 133 (400)
T ss_dssp GGTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEC-----SHHHHHHHHHHHHHTTSTTBCCEEEEEEEE-ETTEEE
T ss_pred cccceeccceeeeccCeEEEEEEECCCCCEEEEEEeCc-----chhHHHHHHHHHHhcCCCCcceEeEEEeec-ccCCcE
Confidence 4567776 689999999999999999999999999962 34678899987555 799999999987542 123457
Q ss_pred EeEEEEecCCCChhhhhccCCCccccccCCHHHHHHHHHHHHHHHHHHhhcCCCCceeeCCCCCCeeecC---CCcEEEc
Q 040925 608 KAFVFEYMENGSLKDWLHQSDDQVEVCKLSLIQRVNIAIDVASAMEYLHHHCQPPMVHGDLKPSNVLLDH---DMVAHVC 684 (833)
Q Consensus 608 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~gL~~LH~~~~~~ivH~Dlkp~NIll~~---~~~~kL~ 684 (833)
.|+||||+++|+|.+++...... .+++.+++.|+.||+.||.|||+. +|+||||||+||+++. ++.+||+
T Consensus 134 ~~lv~E~~~gg~L~~~l~~~~~~----~l~~~~~~~i~~qi~~aL~~LH~~---~ivHrDlkp~Nill~~~~~~~~~kl~ 206 (400)
T 1nxk_A 134 LLIVMECLDGGELFSRIQDRGDQ----AFTEREASEIMKSIGEAIQYLHSI---NIAHRDVKPENLLYTSKRPNAILKLT 206 (400)
T ss_dssp EEEEEECCCSEEHHHHHHCC-------CCBHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEESSSSTTCCEEEC
T ss_pred EEEEEEeCCCCcHHHHHHHhCCC----CCCHHHHHHHHHHHHHHHHHHHHC---CccccCcCcceEEEecCCCCccEEEE
Confidence 89999999999999999875422 589999999999999999999999 9999999999999997 7899999
Q ss_pred ccccccccCcccccccccCCCccccccccccccCccccCCCCCCcccccccCCcCCCccccCCccHHHHHHHhCCCcccc
Q 040925 685 DFGLAKFLSDHQLDTAVKTPSSSIGLKGTVGYVAPEYGMGSEASMTGDIFTGRRPIDAVFNEGHSLHEFAKTALPEKVME 764 (833)
Q Consensus 685 DfG~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~s~~~~~~~~~~~g~~l~~~~~~~~p~~~~~ 764 (833)
|||+++...... .....+||+.|+|||++.+..++.++|||| +|+++|+++++..|+....
T Consensus 207 DFG~a~~~~~~~---------~~~~~~gt~~y~aPE~~~~~~~~~~~Diws----------lG~il~ell~g~~pf~~~~ 267 (400)
T 1nxk_A 207 DFGFAKETTSHN---------SLTTPCYTPYYVAPEVLGPEKYDKSCDMWS----------LGVIMYILLCGYPPFYSNH 267 (400)
T ss_dssp CCTTCEECC--------------------CTTCCGGGSCCCCSSSHHHHHH----------HHHHHHHHHHSSCSCCCCT
T ss_pred ecccccccCCCC---------ccccCCCCCCccCHhhcCCCCCCCcccHHH----------HHHHHHHHHhCCCCCCCCc
Confidence 999998654321 112356999999999999999999999999 8889999999999875322
Q ss_pred ccc--ccchhhhccccchhhhhhhhchHHHHHHHHHHhhccCCCCCCCCCCHHHHHHH
Q 040925 765 IVD--PSLLMEVMTNNSMIQEDKRVKTEECLNAIIRTGVLCSMESPFERMDMRDVVAK 820 (833)
Q Consensus 765 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~ 820 (833)
... +............. .......++..+.+++.+||..||++|||++|+++.
T Consensus 268 ~~~~~~~~~~~i~~~~~~~---~~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~eil~h 322 (400)
T 1nxk_A 268 GLAISPGMKTRIRMGQYEF---PNPEWSEVSEEVKMLIRNLLKTEPTQRMTITEFMNH 322 (400)
T ss_dssp TCSSCCSHHHHHHHTCCCC---CTTTTTTSCHHHHHHHHTTSCSSGGGSCCHHHHHHS
T ss_pred cccccHHHHHHHHcCcccC---CCcccccCCHHHHHHHHHHCCCChhHCcCHHHHhcC
Confidence 111 11111111111100 011112356678999999999999999999999875
No 151
>2ac3_A MAP kinase-interacting serine/threonine kinase 2; DFD motif, transferase; 2.10A {Homo sapiens} PDB: 2hw7_A* 2ac5_A* 2hw6_A
Probab=100.00 E-value=6e-38 Score=334.74 Aligned_cols=262 Identities=21% Similarity=0.245 Sum_probs=198.5
Q ss_pred cCCccC-ceeccCcceEEEEEEECCCceEEEEEEeeccCCcchhHHHHHHHHHhhc-CCCccceEeeEeecCCCCCCceE
Q 040925 531 GEFSSS-NMIGQGSFGYVYKGTLGEDEMIVAVKVINLKYKGASRSFVAECEALRNI-RHRNLIKIITICSSTDFKGTDFK 608 (833)
Q Consensus 531 ~~y~~~-~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~~~~~~~~~~~~~~~~~ 608 (833)
+.|++. +.||+|+||.||+|++..+++.||||+++.......+.+.+|++++.++ +||||+++++++...+ ..
T Consensus 12 ~~y~i~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~~~~h~~i~~~~~~~~~~~-----~~ 86 (316)
T 2ac3_A 12 DVYQLQEDVLGEGAHARVQTCINLITSQEYAVKIIEKQPGHIRSRVFREVEMLYQCQGHRNVLELIEFFEEED-----RF 86 (316)
T ss_dssp TSCEECCCCCCCCSSEEEEEEECSSSCCEEEEEEEECCSSCCHHHHHHHHHHHHHTCCCTTBCCEEEEEEETT-----EE
T ss_pred eeEEecCceecCCceEEEEEEEEcCCCcEEEEEEEeeCcchhHHHHHHHHHHHHHhcCCCCeeeEEEEEeeCC-----EE
Confidence 578885 7899999999999999989999999999866555667899999999995 7999999999976654 89
Q ss_pred eEEEEecCCCChhhhhccCCCccccccCCHHHHHHHHHHHHHHHHHHhhcCCCCceeeCCCCCCeeecCCCc---EEEcc
Q 040925 609 AFVFEYMENGSLKDWLHQSDDQVEVCKLSLIQRVNIAIDVASAMEYLHHHCQPPMVHGDLKPSNVLLDHDMV---AHVCD 685 (833)
Q Consensus 609 ~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~gL~~LH~~~~~~ivH~Dlkp~NIll~~~~~---~kL~D 685 (833)
++||||+++|+|.+++.... .+++..++.++.|++.||+|||+. +|+||||||+||+++.++. +||+|
T Consensus 87 ~lv~e~~~~~~L~~~l~~~~------~~~~~~~~~i~~qi~~~l~~lH~~---~ivH~dlkp~Nil~~~~~~~~~~kl~D 157 (316)
T 2ac3_A 87 YLVFEKMRGGSILSHIHKRR------HFNELEASVVVQDVASALDFLHNK---GIAHRDLKPENILCEHPNQVSPVKICD 157 (316)
T ss_dssp EEEEECCTTCBHHHHHHHHS------SCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEESCSSSSCSEEECC
T ss_pred EEEEEcCCCCcHHHHHhccC------CCCHHHHHHHHHHHHHHHHHHHhC---CceeCCCCHHHEEEccCCCcCceEEEE
Confidence 99999999999999998654 689999999999999999999999 9999999999999998775 99999
Q ss_pred cccccccCcccccccccCCCccccccccccccCccccCC-----CCCCcccccccCCcCCCccccCCccHHHHHHHhCCC
Q 040925 686 FGLAKFLSDHQLDTAVKTPSSSIGLKGTVGYVAPEYGMG-----SEASMTGDIFTGRRPIDAVFNEGHSLHEFAKTALPE 760 (833)
Q Consensus 686 fG~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-----~~~~~~~Di~s~~~~~~~~~~~g~~l~~~~~~~~p~ 760 (833)
||++............ .........||+.|+|||++.+ ..++.++|||| .|+++++++++..|+
T Consensus 158 fg~~~~~~~~~~~~~~-~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~Diws----------lG~il~~l~~g~~pf 226 (316)
T 2ac3_A 158 FDLGSGIKLNGDCSPI-STPELLTPCGSAEYMAPEVVEAFSEEASIYDKRCDLWS----------LGVILYILLSGYPPF 226 (316)
T ss_dssp TTCCC--------------------CCSGGGCCHHHHHHTSHHHHHHTTTHHHHH----------HHHHHHHHHHSSCSC
T ss_pred ccCccccccCCccccc-cccccccccCCcCccChHHhhcccccccCCCcccccHh----------HHHHHHHHHHCCCCC
Confidence 9999865432211100 1111223469999999999865 55889999999 888999999999887
Q ss_pred cccccccccc-------------hhhhccccchhhhhhhhchHHHHHHHHHHhhccCCCCCCCCCCHHHHHHH
Q 040925 761 KVMEIVDPSL-------------LMEVMTNNSMIQEDKRVKTEECLNAIIRTGVLCSMESPFERMDMRDVVAK 820 (833)
Q Consensus 761 ~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~ 820 (833)
......+..+ ........... .......++..+.+++.+||..||++|||++|+++.
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~e~l~h 296 (316)
T 2ac3_A 227 VGRCGSDCGWDRGEACPACQNMLFESIQEGKYEF---PDKDWAHISCAAKDLISKLLVRDAKQRLSAAQVLQH 296 (316)
T ss_dssp CCCCCSCSCC----CCHHHHHHHHHHHHHCCCCC---CHHHHTTSCHHHHHHHHHHSCSSTTTSCCHHHHHHS
T ss_pred cccccccccccccccchhHHHHHHHHHhccCccc---CchhcccCCHHHHHHHHHHhhCChhhCCCHHHHhcC
Confidence 6332221111 00000000000 000112245678999999999999999999999874
No 152
>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A*
Probab=100.00 E-value=3.5e-38 Score=335.53 Aligned_cols=268 Identities=22% Similarity=0.281 Sum_probs=200.8
Q ss_pred HhcCCccCceeccCcceEEEEEEECCCceEEEEEEeeccC---CcchhHHHHHHHHHhhcCCCccceEeeEeecCCCCCC
Q 040925 529 ATGEFSSSNMIGQGSFGYVYKGTLGEDEMIVAVKVINLKY---KGASRSFVAECEALRNIRHRNLIKIITICSSTDFKGT 605 (833)
Q Consensus 529 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~ 605 (833)
..++|++.+.||+|+||.||+|.+..+++.||||+++... ....+.+.+|++++++++||||+++++++...+
T Consensus 30 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~---- 105 (310)
T 2wqm_A 30 TLANFRIEKKIGRGQFSEVYRAACLLDGVPVALKKVQIFDLMDAKARADCIKEIDLLKQLNHPNVIKYYASFIEDN---- 105 (310)
T ss_dssp SGGGEEEEEEEECC--CEEEEEEETTTCCEEEEEEECTTSSCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEETT----
T ss_pred cccceEEEEeecCCCCceEEEEEEcCCCceEEEEeeehhhccCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEcCC----
Confidence 3457999999999999999999998899999999997532 223467889999999999999999999987655
Q ss_pred ceEeEEEEecCCCChhhhhccCCCccccccCCHHHHHHHHHHHHHHHHHHhhcCCCCceeeCCCCCCeeecCCCcEEEcc
Q 040925 606 DFKAFVFEYMENGSLKDWLHQSDDQVEVCKLSLIQRVNIAIDVASAMEYLHHHCQPPMVHGDLKPSNVLLDHDMVAHVCD 685 (833)
Q Consensus 606 ~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~gL~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kL~D 685 (833)
..++||||+++|+|.+++...... ...+++..++.++.|++.||.|||+. +|+||||||+||+++.++.+||+|
T Consensus 106 -~~~lv~e~~~~~~L~~~l~~~~~~--~~~~~~~~~~~i~~qi~~~l~~LH~~---~i~H~dl~p~NIl~~~~~~~kl~D 179 (310)
T 2wqm_A 106 -ELNIVLELADAGDLSRMIKHFKKQ--KRLIPERTVWKYFVQLCSALEHMHSR---RVMHRDIKPANVFITATGVVKLGD 179 (310)
T ss_dssp -EEEEEEECCCSCBHHHHHHHHHHT--TCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTSCEEECC
T ss_pred -cEEEEEecCCCCCHHHHHHHhccc--ccCCCHHHHHHHHHHHHHHHHHHhhC---CeeCCCCcHHHEEEcCCCCEEEEe
Confidence 899999999999999999753211 11689999999999999999999999 999999999999999999999999
Q ss_pred cccccccCcccccccccCCCccccccccccccCccccCCCCCCcccccccCCcCCCccccCCccHHHHHHHhCCCccccc
Q 040925 686 FGLAKFLSDHQLDTAVKTPSSSIGLKGTVGYVAPEYGMGSEASMTGDIFTGRRPIDAVFNEGHSLHEFAKTALPEKVMEI 765 (833)
Q Consensus 686 fG~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~s~~~~~~~~~~~g~~l~~~~~~~~p~~~~~~ 765 (833)
||++........ ......||+.|+|||++.+..++.++|||| +|+++++++++..|+.....
T Consensus 180 fg~~~~~~~~~~--------~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~s----------lG~il~~l~~g~~p~~~~~~ 241 (310)
T 2wqm_A 180 LGLGRFFSSKTT--------AAHSLVGTPYYMSPERIHENGYNFKSDIWS----------LGCLLYEMAALQSPFYGDKM 241 (310)
T ss_dssp C--------------------------CCSSCCHHHHTTCCCCHHHHHHH----------HHHHHHHHHHSSCTTC---C
T ss_pred ccceeeecCCCc--------cccccCCCeeEeChHHhCCCCCCchhhHHH----------HHHHHHHHHhCCCCCcccch
Confidence 999986544221 112346899999999999999999999999 88889999999888652211
Q ss_pred ccccchhhhccccchhhhhhhhchHHHHHHHHHHhhccCCCCCCCCCCHHHHHHHHHHhhhhhh
Q 040925 766 VDPSLLMEVMTNNSMIQEDKRVKTEECLNAIIRTGVLCSMESPFERMDMRDVVAKLCHTRETFL 829 (833)
Q Consensus 766 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~i~~~~~ 829 (833)
.............. .......++..+.+++.+||..||++|||++++++.|+++.....
T Consensus 242 ~~~~~~~~~~~~~~-----~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~il~~l~~l~~~~~ 300 (310)
T 2wqm_A 242 NLYSLCKKIEQCDY-----PPLPSDHYSEELRQLVNMCINPDPEKRPDVTYVYDVAKRMHACTA 300 (310)
T ss_dssp CHHHHHHHHHTTCS-----CCCCTTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHhhcccC-----CCCcccccCHHHHHHHHHHcCCChhhCCCHHHHHHHHHHHHHhhh
Confidence 11111111111100 001112345678999999999999999999999999999987654
No 153
>1rjb_A FL cytokine receptor; kinase, structure, autoinhibition, juxtamembrane domain, transferase; 2.10A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=2.8e-38 Score=341.60 Aligned_cols=271 Identities=22% Similarity=0.324 Sum_probs=205.9
Q ss_pred HHhcCCccCceeccCcceEEEEEEE-----CCCceEEEEEEeeccC-CcchhHHHHHHHHHhhc-CCCccceEeeEeecC
Q 040925 528 KATGEFSSSNMIGQGSFGYVYKGTL-----GEDEMIVAVKVINLKY-KGASRSFVAECEALRNI-RHRNLIKIITICSST 600 (833)
Q Consensus 528 ~~~~~y~~~~~lg~G~~g~Vy~~~~-----~~~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l-~h~niv~~~~~~~~~ 600 (833)
...++|++.+.||+|+||.||+|++ ..+++.||||+++... ....+.+.+|+.+++++ +||||+++++++...
T Consensus 42 ~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~ 121 (344)
T 1rjb_A 42 FPRENLEFGKVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKADSSEREALMSELKMMTQLGSHENIVNLLGACTLS 121 (344)
T ss_dssp CCGGGEEEEEEEEECSSEEEEEEEEESCSSSSCEEEEEEEEECC------CHHHHHHHHHHHHHCCCTTBCCEEEEECSS
T ss_pred cCHHHceeeeeecCCCCceeEEeeeeccccCCcceEEEEEecccccCHHHHHHHHHHHHHHHhhcCCCCeeeEEEEEeeC
Confidence 3457899999999999999999997 3467889999997442 33457899999999999 899999999997654
Q ss_pred CCCCCceEeEEEEecCCCChhhhhccCCCcc-----------------ccccCCHHHHHHHHHHHHHHHHHHhhcCCCCc
Q 040925 601 DFKGTDFKAFVFEYMENGSLKDWLHQSDDQV-----------------EVCKLSLIQRVNIAIDVASAMEYLHHHCQPPM 663 (833)
Q Consensus 601 ~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~-----------------~~~~l~~~~~~~i~~qi~~gL~~LH~~~~~~i 663 (833)
+ ..++||||+++|+|.+++....... ....+++..++.++.|++.||+|||+. ||
T Consensus 122 ~-----~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~---~i 193 (344)
T 1rjb_A 122 G-----PIYLIFEYCCYGDLLNYLRSKREKFSEDEIEYENQKRLEEEEDLNVLTFEDLLCFAYQVAKGMEFLEFK---SC 193 (344)
T ss_dssp S-----SCEEEEECCTTCBHHHHHHTTTTCC---------------------CCHHHHHHHHHHHHHHHHHHHHT---TE
T ss_pred C-----ccEEEEecCCCCcHHHHHhhccccccccccchhhhcccccccccccCCHHHHHHHHHHHHHHHHHHHhC---Cc
Confidence 4 7899999999999999998754210 012479999999999999999999999 99
Q ss_pred eeeCCCCCCeeecCCCcEEEcccccccccCcccccccccCCCccccccccccccCccccCCCCCCcccccccCCcCCCcc
Q 040925 664 VHGDLKPSNVLLDHDMVAHVCDFGLAKFLSDHQLDTAVKTPSSSIGLKGTVGYVAPEYGMGSEASMTGDIFTGRRPIDAV 743 (833)
Q Consensus 664 vH~Dlkp~NIll~~~~~~kL~DfG~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~s~~~~~~~~ 743 (833)
+||||||+||+++.++.+||+|||++......... .......||+.|+|||++.+..++.++||||
T Consensus 194 vH~Dikp~NIll~~~~~~kL~Dfg~~~~~~~~~~~------~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~s-------- 259 (344)
T 1rjb_A 194 VHRDLAARNVLVTHGKVVKICDFGLARDIMSDSNY------VVRGNARLPVKWMAPESLFEGIYTIKSDVWS-------- 259 (344)
T ss_dssp EETTCSGGGEEEETTTEEEECCCGGGSCGGGCTTS------EEETTEEECGGGCCHHHHHHCCCCHHHHHHH--------
T ss_pred ccCCCChhhEEEcCCCcEEeCCCccCcccccCccc------eeccCccCccCccCHHHhccCCCChhHhHHH--------
Confidence 99999999999999999999999999866443211 1112345789999999998889999999999
Q ss_pred ccCCccHHHHHH-HhCCCcccccccccchhhhccccchhhhhhhhchHHHHHHHHHHhhccCCCCCCCCCCHHHHHHHHH
Q 040925 744 FNEGHSLHEFAK-TALPEKVMEIVDPSLLMEVMTNNSMIQEDKRVKTEECLNAIIRTGVLCSMESPFERMDMRDVVAKLC 822 (833)
Q Consensus 744 ~~~g~~l~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~ 822 (833)
+|++++++++ +..|+..... +... ........ ....+..+++.+.+++.+||..||++|||+.|+++.|+
T Consensus 260 --lG~il~el~t~g~~p~~~~~~-~~~~-~~~~~~~~-----~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~l~ 330 (344)
T 1rjb_A 260 --YGILLWEIFSLGVNPYPGIPV-DANF-YKLIQNGF-----KMDQPFYATEEIYIIMQSCWAFDSRKRPSFPNLTSFLG 330 (344)
T ss_dssp --HHHHHHHHTTTSCCSSTTCCC-SHHH-HHHHHTTC-----CCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHH
T ss_pred --HHHHHHHHHcCCCCCcccCCc-HHHH-HHHHhcCC-----CCCCCCCCCHHHHHHHHHHcCCCchhCcCHHHHHHHHH
Confidence 7777888886 7767642211 1111 11111110 00112234567899999999999999999999999999
Q ss_pred Hhhhhhh
Q 040925 823 HTRETFL 829 (833)
Q Consensus 823 ~i~~~~~ 829 (833)
.+.+...
T Consensus 331 ~~~~~~~ 337 (344)
T 1rjb_A 331 CQLADAE 337 (344)
T ss_dssp HHC----
T ss_pred HHHHHHH
Confidence 9876544
No 154
>2r5t_A Serine/threonine-protein kinase SGK1; AGC protein kinase, apoptosis, ATP-binding, cytoplasm, endoplasmic reticulum, nucleotide-binding, nucleus; HET: ANP; 1.90A {Homo sapiens} PDB: 3hdm_A* 3hdn_A*
Probab=100.00 E-value=1.8e-38 Score=344.11 Aligned_cols=248 Identities=26% Similarity=0.312 Sum_probs=192.2
Q ss_pred hcCCccCceeccCcceEEEEEEECCCceEEEEEEeeccC---CcchhHHHHHHHH-HhhcCCCccceEeeEeecCCCCCC
Q 040925 530 TGEFSSSNMIGQGSFGYVYKGTLGEDEMIVAVKVINLKY---KGASRSFVAECEA-LRNIRHRNLIKIITICSSTDFKGT 605 (833)
Q Consensus 530 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~---~~~~~~~~~E~~~-l~~l~h~niv~~~~~~~~~~~~~~ 605 (833)
.++|++.+.||+|+||.||+|+++.+++.||||+++... ......+.+|..+ ++.++||||+++++++...+
T Consensus 37 ~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~e~~~ll~~~~hp~Iv~l~~~~~~~~---- 112 (373)
T 2r5t_A 37 PSDFHFLKVIGKGSFGKVLLARHKAEEVFYAVKVLQKKAILKKKEEKHIMSERNVLLKNVKHPFLVGLHFSFQTAD---- 112 (373)
T ss_dssp GGGEEEEEEEECCTTCEEEEEEETTTCCEEEEEEEEGGGBC-------------CCBCCCCCTTBCCEEEEEECSS----
T ss_pred hhheEEEEEEeeCCCeEEEEEEEcCCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHHhCCCCCCCCEEEEEEeCC----
Confidence 457999999999999999999999999999999997543 2233456677776 56789999999999976654
Q ss_pred ceEeEEEEecCCCChhhhhccCCCccccccCCHHHHHHHHHHHHHHHHHHhhcCCCCceeeCCCCCCeeecCCCcEEEcc
Q 040925 606 DFKAFVFEYMENGSLKDWLHQSDDQVEVCKLSLIQRVNIAIDVASAMEYLHHHCQPPMVHGDLKPSNVLLDHDMVAHVCD 685 (833)
Q Consensus 606 ~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~gL~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kL~D 685 (833)
..|+||||+++|+|.+++.... .+++..++.++.||+.||+|||+. +|+||||||+||+++.+|.+||+|
T Consensus 113 -~~~lv~E~~~gg~L~~~l~~~~------~~~~~~~~~~~~qi~~aL~~LH~~---givHrDlkp~NIll~~~g~ikL~D 182 (373)
T 2r5t_A 113 -KLYFVLDYINGGELFYHLQRER------CFLEPRARFYAAEIASALGYLHSL---NIVYRDLKPENILLDSQGHIVLTD 182 (373)
T ss_dssp -EEEEEEECCCSCBHHHHHHHHS------SCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTSCEEECC
T ss_pred -EEEEEEeCCCCCcHHHHHHhcC------CCCHHHHHHHHHHHHHHHHHHHHC---CceecCCCHHHEEECCCCCEEEee
Confidence 8999999999999999998654 689999999999999999999999 999999999999999999999999
Q ss_pred cccccccCcccccccccCCCccccccccccccCccccCCCCCCcccccccCCcCCCccccCCccHHHHHHHhCCCccccc
Q 040925 686 FGLAKFLSDHQLDTAVKTPSSSIGLKGTVGYVAPEYGMGSEASMTGDIFTGRRPIDAVFNEGHSLHEFAKTALPEKVMEI 765 (833)
Q Consensus 686 fG~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~s~~~~~~~~~~~g~~l~~~~~~~~p~~~~~~ 765 (833)
||+++...... ......+||+.|+|||++.+..++.++|||| .|+++|+++++..|+.....
T Consensus 183 FG~a~~~~~~~--------~~~~~~~gt~~y~aPE~~~~~~~~~~~Diws----------lG~il~ell~G~~Pf~~~~~ 244 (373)
T 2r5t_A 183 FGLCKENIEHN--------STTSTFCGTPEYLAPEVLHKQPYDRTVDWWC----------LGAVLYEMLYGLPPFYSRNT 244 (373)
T ss_dssp CCBCGGGBCCC--------CCCCSBSCCCCCCCHHHHTTCCCCTHHHHHH----------HHHHHHHHHHSSCTTCCSBH
T ss_pred CccccccccCC--------CccccccCCccccCHHHhCCCCCCchhhhHH----------HHHHHHHHHcCCCCCCCCCH
Confidence 99998533211 1223467999999999999999999999999 88899999999988753221
Q ss_pred ccccchhhhccccchhhhhhhhchHHHHHHHHHHhhccCCCCCCCCCCHHHHH
Q 040925 766 VDPSLLMEVMTNNSMIQEDKRVKTEECLNAIIRTGVLCSMESPFERMDMRDVV 818 (833)
Q Consensus 766 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil 818 (833)
............ ..+..++..+.+++.+||+.||++||++.+.+
T Consensus 245 --~~~~~~i~~~~~-------~~~~~~~~~~~~li~~lL~~dp~~R~~~~~~~ 288 (373)
T 2r5t_A 245 --AEMYDNILNKPL-------QLKPNITNSARHLLEGLLQKDRTKRLGAKDDF 288 (373)
T ss_dssp --HHHHHHHHHSCC-------CCCSSSCHHHHHHHHHHTCSSGGGSTTTTTTH
T ss_pred --HHHHHHHHhccc-------CCCCCCCHHHHHHHHHHcccCHHhCCCCCCCH
Confidence 111111111111 01123456788999999999999999986433
No 155
>3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase domain, multitargeted small M kinase inhibitor; HET: ITI; 2.70A {Homo sapiens}
Probab=100.00 E-value=2.3e-38 Score=338.76 Aligned_cols=259 Identities=21% Similarity=0.355 Sum_probs=199.3
Q ss_pred cCCccCceeccCcceEEEEEEECCCceE----EEEEEeecc-CCcchhHHHHHHHHHhhcCCCccceEeeEeecCCCCCC
Q 040925 531 GEFSSSNMIGQGSFGYVYKGTLGEDEMI----VAVKVINLK-YKGASRSFVAECEALRNIRHRNLIKIITICSSTDFKGT 605 (833)
Q Consensus 531 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~----vavK~~~~~-~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~ 605 (833)
++|++.+.||+|+||.||+|++..+++. ||+|.++.. .....+.+.+|+.++++++||||+++++++...
T Consensus 15 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~kv~iK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~----- 89 (327)
T 3lzb_A 15 TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTS----- 89 (327)
T ss_dssp TTEEEEEEEEECSSEEEEEEEECCTTCSCCEEEEEEEECCCSSCCCHHHHHHHHHHHTTCCBTTBCCCCEEEESS-----
T ss_pred hHceEEEEeeeCCCeEEEEEEEcCCCceEEEEEEEEeeccccCHHHHHHHHHHHHHHHhCCCCCeeEEEEEEecC-----
Confidence 5799999999999999999999877765 467766533 234457899999999999999999999998653
Q ss_pred ceEeEEEEecCCCChhhhhccCCCccccccCCHHHHHHHHHHHHHHHHHHhhcCCCCceeeCCCCCCeeecCCCcEEEcc
Q 040925 606 DFKAFVFEYMENGSLKDWLHQSDDQVEVCKLSLIQRVNIAIDVASAMEYLHHHCQPPMVHGDLKPSNVLLDHDMVAHVCD 685 (833)
Q Consensus 606 ~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~gL~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kL~D 685 (833)
..++||||+++|+|.+++..... .+++..++.++.|++.||+|||+. +|+||||||+||+++.++.+||+|
T Consensus 90 -~~~~v~~~~~~g~L~~~l~~~~~-----~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dikp~NIl~~~~~~~kL~D 160 (327)
T 3lzb_A 90 -TVQLITQLMPFGCLLDYVREHKD-----NIGSQYLLNWCVQIAKGMNYLEDR---RLVHRDLAARNVLVKTPQHVKITD 160 (327)
T ss_dssp -SEEEEECCCSSCBHHHHHHHTTT-----CCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEEEETTEEEECC
T ss_pred -CceEEEEecCCCcHHHHHHhcCC-----CCCHHHHHHHHHHHHHHHHHHhhC---CCcCCCCCHHHEEEcCCCCEEEcc
Confidence 37899999999999999987542 689999999999999999999999 999999999999999999999999
Q ss_pred cccccccCcccccccccCCCccccccccccccCccccCCCCCCcccccccCCcCCCccccCCccHHHHHH-HhCCCcccc
Q 040925 686 FGLAKFLSDHQLDTAVKTPSSSIGLKGTVGYVAPEYGMGSEASMTGDIFTGRRPIDAVFNEGHSLHEFAK-TALPEKVME 764 (833)
Q Consensus 686 fG~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~s~~~~~~~~~~~g~~l~~~~~-~~~p~~~~~ 764 (833)
||+++......... ......||+.|+|||++.+..++.++|||| +|++++++++ +..|+....
T Consensus 161 fG~a~~~~~~~~~~------~~~~~~~t~~y~aPE~~~~~~~~~~~Di~s----------lG~il~ell~~g~~p~~~~~ 224 (327)
T 3lzb_A 161 FGLAKLLGAEEKEY------HAEGGKVPIKWMALESILHRIYTHQSDVWS----------YGVTVWELMTFGSKPYDGIP 224 (327)
T ss_dssp TTC----------------------CCCGGGSCHHHHHHCCCCHHHHHHH----------HHHHHHHHHTTSCCTTTTCC
T ss_pred CcceeEccCccccc------cccCCCccccccCHHHHcCCCCChHHHHHH----------HHHHHHHHHHCCCCCCCCCC
Confidence 99998765432211 112235788999999999999999999999 7888888888 777765322
Q ss_pred cccccchhhhccccchhhhhhhhchHHHHHHHHHHhhccCCCCCCCCCCHHHHHHHHHHhhhh
Q 040925 765 IVDPSLLMEVMTNNSMIQEDKRVKTEECLNAIIRTGVLCSMESPFERMDMRDVVAKLCHTRET 827 (833)
Q Consensus 765 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~i~~~ 827 (833)
.. .......... ....+..++..+.+++.+||+.||++|||++|+++.|+++.+.
T Consensus 225 ~~---~~~~~~~~~~-----~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~~L~~~~~~ 279 (327)
T 3lzb_A 225 AS---EISSILEKGE-----RLPQPPICTIDVYMIMRKCWMIDADSRPKFRELIIEFSKMARD 279 (327)
T ss_dssp GG---GHHHHHHTTC-----CCCCCTTBCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHTS
T ss_pred HH---HHHHHHHcCC-----CCCCCccCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHHhC
Confidence 11 1111111110 0111223456788999999999999999999999999998753
No 156
>3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=1.8e-37 Score=334.32 Aligned_cols=275 Identities=24% Similarity=0.332 Sum_probs=203.5
Q ss_pred HHHhcCCccCceeccCcceEEEEEEECCCceEEEEEEeeccCCcchhHHHHHHHHHhhc--CCCccceEeeEeecCCCCC
Q 040925 527 SKATGEFSSSNMIGQGSFGYVYKGTLGEDEMIVAVKVINLKYKGASRSFVAECEALRNI--RHRNLIKIITICSSTDFKG 604 (833)
Q Consensus 527 ~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l--~h~niv~~~~~~~~~~~~~ 604 (833)
....++|++.+.||+|+||.||+|++. ++.||||++... ......+|.+++... +||||+++++++.... ..
T Consensus 33 ~~~~~~y~~~~~lg~G~~g~V~~~~~~--~~~vavK~~~~~---~~~~~~~e~~~~~~~~~~h~~i~~~~~~~~~~~-~~ 106 (337)
T 3mdy_A 33 RTIAKQIQMVKQIGKGRYGEVWMGKWR--GEKVAVKVFFTT---EEASWFRETEIYQTVLMRHENILGFIAADIKGT-GS 106 (337)
T ss_dssp TTHHHHCEEEEEEEEETTEEEEEEEET--TEEEEEEEEEGG---GHHHHHHHHHHHTSTTCCCTTBCCEEEEEEESC-GG
T ss_pred cccccceEEEeEeecCCCeEEEEEEEC--CceEEEEEEecc---ccchhhhHHHHHHHHhhcCCCeeeEEEEEccCC-CC
Confidence 344578999999999999999999985 889999998633 234455666666655 8999999999986652 22
Q ss_pred CceEeEEEEecCCCChhhhhccCCCccccccCCHHHHHHHHHHHHHHHHHHhhcC-----CCCceeeCCCCCCeeecCCC
Q 040925 605 TDFKAFVFEYMENGSLKDWLHQSDDQVEVCKLSLIQRVNIAIDVASAMEYLHHHC-----QPPMVHGDLKPSNVLLDHDM 679 (833)
Q Consensus 605 ~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~gL~~LH~~~-----~~~ivH~Dlkp~NIll~~~~ 679 (833)
....++||||+++|+|.+++... .+++..++.++.|++.||+|||+.. .++|+||||||+||+++.++
T Consensus 107 ~~~~~lv~e~~~~g~L~~~l~~~-------~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~~ivH~Dikp~Nill~~~~ 179 (337)
T 3mdy_A 107 WTQLYLITDYHENGSLYDYLKST-------TLDAKSMLKLAYSSVSGLCHLHTEIFSTQGKPAIAHRDLKSKNILVKKNG 179 (337)
T ss_dssp GCEEEEEECCCTTCBHHHHHHHC-------CBCHHHHHHHHHHHHHHHHHHHSCBCSTTCBCCEECSCCCGGGEEECTTS
T ss_pred CCceEEEEeccCCCcHHHHhhcc-------CCCHHHHHHHHHHHHHHHHHHHHhhhhhccCCCEEecccchHHEEECCCC
Confidence 24789999999999999999754 5899999999999999999999752 34899999999999999999
Q ss_pred cEEEcccccccccCcccccccccCCCccccccccccccCccccCCCCCCcc------cccccCCcCCCccccCCccHHHH
Q 040925 680 VAHVCDFGLAKFLSDHQLDTAVKTPSSSIGLKGTVGYVAPEYGMGSEASMT------GDIFTGRRPIDAVFNEGHSLHEF 753 (833)
Q Consensus 680 ~~kL~DfG~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~------~Di~s~~~~~~~~~~~g~~l~~~ 753 (833)
.+||+|||+|+.......... .......||+.|+|||++.+..++.+ +|||| +|++++++
T Consensus 180 ~~kl~Dfg~a~~~~~~~~~~~----~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~Diws----------lG~il~el 245 (337)
T 3mdy_A 180 TCCIADLGLAVKFISDTNEVD----IPPNTRVGTKRYMPPEVLDESLNRNHFQSYIMADMYS----------FGLILWEV 245 (337)
T ss_dssp CEEECCCTTCEECC-------------CCSSCSCGGGCCHHHHTTCCCTTCTHHHHHHHHHH----------HHHHHHHH
T ss_pred CEEEEeCCCceeecccccccc----CCCCCCccCcceeChhhcccccCCccccCccccchHH----------HHHHHHHH
Confidence 999999999976654322111 11123469999999999887766655 89999 78888899
Q ss_pred HHHhCC----------Ccccccccccc--hhhh-ccccchhhhhhhhchHHHHHHHHHHhhccCCCCCCCCCCHHHHHHH
Q 040925 754 AKTALP----------EKVMEIVDPSL--LMEV-MTNNSMIQEDKRVKTEECLNAIIRTGVLCSMESPFERMDMRDVVAK 820 (833)
Q Consensus 754 ~~~~~p----------~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~ 820 (833)
+++..+ +......++.. .... ................++++.+.+++.+||+.||++|||+.|+++.
T Consensus 246 ~tg~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~ 325 (337)
T 3mdy_A 246 ARRCVSGGIVEEYQLPYHDLVPSDPSYEDMREIVCIKKLRPSFPNRWSSDECLRQMGKLMTECWAHNPASRLTALRVKKT 325 (337)
T ss_dssp HTTBCBTTBCCCCCCTTTTTSCSSCCHHHHHHHHTTSCCCCCCCGGGGGSHHHHHHHHHHHHHSCSSGGGSCCHHHHHHH
T ss_pred HhccCcccccccccccHhhhcCCCCchhhhHHHHhhhccCccccccchhhHHHHHHHHHHHHhhhhChhhCCCHHHHHHH
Confidence 888443 32111111110 0000 0011111111222344788899999999999999999999999999
Q ss_pred HHHhhhhh
Q 040925 821 LCHTRETF 828 (833)
Q Consensus 821 L~~i~~~~ 828 (833)
|+.+.+..
T Consensus 326 L~~l~~~~ 333 (337)
T 3mdy_A 326 LAKMSESQ 333 (337)
T ss_dssp HHHHHHTT
T ss_pred HHHHHhhc
Confidence 99998764
No 157
>2h34_A Serine/threonine-protein kinase PKNE; apoenzyme, transferase; 2.80A {Mycobacterium tuberculosis}
Probab=100.00 E-value=4.7e-38 Score=333.98 Aligned_cols=265 Identities=20% Similarity=0.223 Sum_probs=201.2
Q ss_pred HHhcCCccCceeccCcceEEEEEEECCCceEEEEEEeeccCCc---chhHHHHHHHHHhhcCCCccceEeeEeecCCCCC
Q 040925 528 KATGEFSSSNMIGQGSFGYVYKGTLGEDEMIVAVKVINLKYKG---ASRSFVAECEALRNIRHRNLIKIITICSSTDFKG 604 (833)
Q Consensus 528 ~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~---~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~ 604 (833)
...++|++.+.||+|+||.||+|++..+++.||+|+++..... ..+.+.+|+.++++++||||+++++++...+
T Consensus 31 ~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~~--- 107 (309)
T 2h34_A 31 TQFGPYRLRRLVGRGGMGDVYEAEDTVRERIVALKLMSETLSSDPVFRTRMQREARTAGRLQEPHVVPIHDFGEIDG--- 107 (309)
T ss_dssp ---CCEEEEEEEEECSSSEEEEEEETTTTEEEEEEECGGGGGGSHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEETT---
T ss_pred cEeccEEEEEEEcCCCCeeEEEEEEcCCCeEEEEEecCcccccCHHHHHHHHHHHHHHhhcCCCCeeEEEEEEeeCC---
Confidence 3457899999999999999999999989999999999754222 2367899999999999999999999976654
Q ss_pred CceEeEEEEecCCCChhhhhccCCCccccccCCHHHHHHHHHHHHHHHHHHhhcCCCCceeeCCCCCCeeecCCCcEEEc
Q 040925 605 TDFKAFVFEYMENGSLKDWLHQSDDQVEVCKLSLIQRVNIAIDVASAMEYLHHHCQPPMVHGDLKPSNVLLDHDMVAHVC 684 (833)
Q Consensus 605 ~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~gL~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kL~ 684 (833)
..++||||+++++|.+++.... .+++.+++.++.|++.||+|||+. +|+||||||+||+++.++.+||+
T Consensus 108 --~~~lv~e~~~~~~L~~~l~~~~------~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~dlkp~NIl~~~~~~~kl~ 176 (309)
T 2h34_A 108 --QLYVDMRLINGVDLAAMLRRQG------PLAPPRAVAIVRQIGSALDAAHAA---GATHRDVKPENILVSADDFAYLV 176 (309)
T ss_dssp --EEEEEEECCCCEEHHHHHHHHC------SCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTSCEEEC
T ss_pred --eEEEEEEecCCCCHHHHHHhcC------CCCHHHHHHHHHHHHHHHHHHHHC---cCCcCCCChHHEEEcCCCCEEEe
Confidence 8999999999999999998654 689999999999999999999999 99999999999999999999999
Q ss_pred ccccccccCcccccccccCCCccccccccccccCccccCCCCCCcccccccCCcCCCccccCCccHHHHHHHhCCCcccc
Q 040925 685 DFGLAKFLSDHQLDTAVKTPSSSIGLKGTVGYVAPEYGMGSEASMTGDIFTGRRPIDAVFNEGHSLHEFAKTALPEKVME 764 (833)
Q Consensus 685 DfG~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~s~~~~~~~~~~~g~~l~~~~~~~~p~~~~~ 764 (833)
|||++......... ......||+.|+|||++.+..++.++|||| +|+++++++++..|+....
T Consensus 177 Dfg~~~~~~~~~~~-------~~~~~~~~~~y~aPE~~~~~~~~~~~Di~s----------lG~il~~l~~g~~pf~~~~ 239 (309)
T 2h34_A 177 DFGIASATTDEKLT-------QLGNTVGTLYYMAPERFSESHATYRADIYA----------LTCVLYECLTGSPPYQGDQ 239 (309)
T ss_dssp SCCC-----------------------CCGGGCCGGGTCC----CCCHHHH----------HHHHHHHHHHSSCSSCSCH
T ss_pred cCccCccccccccc-------cccccCCCcCccCHHHHcCCCCCchHhHHH----------HHHHHHHHHHCCCCCCCch
Confidence 99999865443211 112346999999999999999999999999 8889999999998876322
Q ss_pred cccccchhhhccccchhhhhhhhchHHHHHHHHHHhhccCCCCCCCCC-CHHHHHHHHHHhhhhhh
Q 040925 765 IVDPSLLMEVMTNNSMIQEDKRVKTEECLNAIIRTGVLCSMESPFERM-DMRDVVAKLCHTRETFL 829 (833)
Q Consensus 765 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RP-t~~eil~~L~~i~~~~~ 829 (833)
.. ........... ........++..+.+++.+||..||++|| |++++++.|+...+...
T Consensus 240 ~~---~~~~~~~~~~~---~~~~~~~~~~~~l~~li~~~l~~dP~~Rp~s~~~l~~~l~~~l~~~~ 299 (309)
T 2h34_A 240 LS---VMGAHINQAIP---RPSTVRPGIPVAFDAVIARGMAKNPEDRYVTCGDLSAAAHAALATAD 299 (309)
T ss_dssp HH---HHHHHHHSCCC---CGGGTSTTCCTHHHHHHHHHTCSSGGGSCSSHHHHHHHHHHTCC---
T ss_pred HH---HHHHHhccCCC---CccccCCCCCHHHHHHHHHhccCCHHHHHHhHHHHHHHHHHHHHhhc
Confidence 11 11111111110 01112234566788999999999999999 99999999998866543
No 158
>3kk8_A Calcium/calmodulin dependent protein kinase II; ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; HET: TPO; 1.72A {Caenorhabditis elegans} PDB: 3kk9_A* 3kl8_A 2vn9_A* 3bhh_A*
Probab=100.00 E-value=5.6e-38 Score=329.48 Aligned_cols=253 Identities=20% Similarity=0.258 Sum_probs=203.4
Q ss_pred hcCCccCceeccCcceEEEEEEECCCceEEEEEEeeccCC--cchhHHHHHHHHHhhcCCCccceEeeEeecCCCCCCce
Q 040925 530 TGEFSSSNMIGQGSFGYVYKGTLGEDEMIVAVKVINLKYK--GASRSFVAECEALRNIRHRNLIKIITICSSTDFKGTDF 607 (833)
Q Consensus 530 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~--~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~ 607 (833)
.++|++.+.||+|+||.||+|.+..+++.||+|++..... ...+.+.+|++++++++||||+++++++.... .
T Consensus 5 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~-----~ 79 (284)
T 3kk8_A 5 SDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRKLQHPNIVRLHDSIQEES-----F 79 (284)
T ss_dssp TTTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEECSS-----E
T ss_pred hhhhhhhhhhcCcCCeEEEEEEEcCCCceEEEEEeecccCCHHHHHHHHHHHHHHHHcCCCCcCeEEEEEEcCC-----E
Confidence 4689999999999999999999999999999999975432 23467889999999999999999999976554 8
Q ss_pred EeEEEEecCCCChhhhhccCCCccccccCCHHHHHHHHHHHHHHHHHHhhcCCCCceeeCCCCCCeeecCCCc---EEEc
Q 040925 608 KAFVFEYMENGSLKDWLHQSDDQVEVCKLSLIQRVNIAIDVASAMEYLHHHCQPPMVHGDLKPSNVLLDHDMV---AHVC 684 (833)
Q Consensus 608 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~gL~~LH~~~~~~ivH~Dlkp~NIll~~~~~---~kL~ 684 (833)
.++||||+++|+|.+++.... .+++..+..++.|++.||+|||+. +|+||||||+||+++.++. +||+
T Consensus 80 ~~~v~e~~~~~~l~~~~~~~~------~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dikp~Nil~~~~~~~~~~kl~ 150 (284)
T 3kk8_A 80 HYLVFDLVTGGELFEDIVARE------FYSEADASHCIQQILESIAYCHSN---GIVHRNLKPENLLLASKAKGAAVKLA 150 (284)
T ss_dssp EEEEECCCCSCBHHHHHHHHS------SCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEESSSSTTCCEEEC
T ss_pred EEEEEecCCCCCHHHHHHhcC------CCCHHHHHHHHHHHHHHHHHHHHC---CcCcCCCCHHHEEEecCCCCCcEEEe
Confidence 899999999999999887654 689999999999999999999999 9999999999999986654 9999
Q ss_pred ccccccccCcccccccccCCCccccccccccccCccccCCCCCCcccccccCCcCCCccccCCccHHHHHHHhCCCcccc
Q 040925 685 DFGLAKFLSDHQLDTAVKTPSSSIGLKGTVGYVAPEYGMGSEASMTGDIFTGRRPIDAVFNEGHSLHEFAKTALPEKVME 764 (833)
Q Consensus 685 DfG~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~s~~~~~~~~~~~g~~l~~~~~~~~p~~~~~ 764 (833)
|||++........ .....||+.|+|||++.+..++.++|||| .|+++++++++..|+....
T Consensus 151 Dfg~~~~~~~~~~---------~~~~~~~~~y~aPE~~~~~~~~~~~Di~s----------lG~~l~~l~~g~~pf~~~~ 211 (284)
T 3kk8_A 151 DFGLAIEVNDSEA---------WHGFAGTPGYLSPEVLKKDPYSKPVDIWA----------CGVILYILLVGYPPFWDED 211 (284)
T ss_dssp CCTTCEECCSSCB---------CCCSCSCGGGCCHHHHTTCCBCTHHHHHH----------HHHHHHHHHHSSCSSCCSS
T ss_pred eceeeEEcccCcc---------ccCCCCCcCCcCchhhcCCCCCcccchHH----------HHHHHHHHHHCCCCCCCCc
Confidence 9999976544221 12356999999999999999999999999 8888999999998875322
Q ss_pred cccccchhhhccccchhhhhhhhchHHHHHHHHHHhhccCCCCCCCCCCHHHHHHH
Q 040925 765 IVDPSLLMEVMTNNSMIQEDKRVKTEECLNAIIRTGVLCSMESPFERMDMRDVVAK 820 (833)
Q Consensus 765 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~ 820 (833)
.. ............. .......+++.+.+++.+||+.||++|||++|+++.
T Consensus 212 ~~--~~~~~~~~~~~~~---~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~~~l~h 262 (284)
T 3kk8_A 212 QH--RLYAQIKAGAYDY---PSPEWDTVTPEAKSLIDSMLTVNPKKRITADQALKV 262 (284)
T ss_dssp HH--HHHHHHHHTCCCC---CTTTTTTSCHHHHHHHHHHSCSSTTTSCCHHHHTTS
T ss_pred hh--HHHHHHHhccccC---CchhhcccCHHHHHHHHHHcccChhhCCCHHHHhcC
Confidence 11 1111111111000 011112345678899999999999999999999875
No 159
>3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} SCOP: d.144.1.0 PDB: 3kmw_A* 3rep_A*
Probab=100.00 E-value=2.6e-38 Score=329.59 Aligned_cols=255 Identities=21% Similarity=0.314 Sum_probs=203.8
Q ss_pred hcCCccCceeccCcceEEEEEEECCCceEEEEEEeeccCC--cchhHHHHHHHHHhhcCCCccceEeeEeecCCCCCCce
Q 040925 530 TGEFSSSNMIGQGSFGYVYKGTLGEDEMIVAVKVINLKYK--GASRSFVAECEALRNIRHRNLIKIITICSSTDFKGTDF 607 (833)
Q Consensus 530 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~--~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~ 607 (833)
.++|++.+.||+|+||.||+|++. ++.||||+++.... ...+.+.+|+.++++++||||+++++++.... ...
T Consensus 9 ~~~y~~~~~lg~G~~g~V~~~~~~--~~~~avK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~---~~~ 83 (271)
T 3kmu_A 9 FKQLNFLTKLNENHSGELWKGRWQ--GNDIVVKVLKVRDWSTRKSRDFNEECPRLRIFSHPNVLPVLGACQSPP---APH 83 (271)
T ss_dssp GGGCEEEEEEEEETTEEEEEEEET--TEEEEEEEECCTTCCHHHHHHHHHHGGGGCCCSCTTEECEEEEECTTT---SSS
T ss_pred HHHhHHHHHhcCCCcceEEEEEEC--CeeEEEEEecccccCHHHHHHHHHHHHHHHhcCCCchhheEEEEccCC---CCC
Confidence 457999999999999999999984 88899999975432 23467899999999999999999999986542 347
Q ss_pred EeEEEEecCCCChhhhhccCCCccccccCCHHHHHHHHHHHHHHHHHHhhcCCCC--ceeeCCCCCCeeecCCCcEEEcc
Q 040925 608 KAFVFEYMENGSLKDWLHQSDDQVEVCKLSLIQRVNIAIDVASAMEYLHHHCQPP--MVHGDLKPSNVLLDHDMVAHVCD 685 (833)
Q Consensus 608 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~gL~~LH~~~~~~--ivH~Dlkp~NIll~~~~~~kL~D 685 (833)
.++||||+++|+|.+++...... .+++.+++.++.|++.||+|||+. + |+||||||+||+++.++.++|+|
T Consensus 84 ~~lv~e~~~~~~L~~~l~~~~~~----~~~~~~~~~i~~qi~~~l~~lH~~---~~~i~H~dikp~Nil~~~~~~~~l~~ 156 (271)
T 3kmu_A 84 PTLITHWMPYGSLYNVLHEGTNF----VVDQSQAVKFALDMARGMAFLHTL---EPLIPRHALNSRSVMIDEDMTARISM 156 (271)
T ss_dssp CEEEEECCTTCBHHHHHHSCSSC----CCCHHHHHHHHHHHHHHHHHHTTS---SSCCTTCCCSGGGEEECTTSCEEEEG
T ss_pred eEeeecccCCCcHHHHHhhcccC----CCCHHHHHHHHHHHHHHHHHHhcC---CCceecCCCccceEEEcCCcceeEEe
Confidence 89999999999999999875432 589999999999999999999998 8 99999999999999999999999
Q ss_pred cccccccCcccccccccCCCccccccccccccCccccCCCCCCc---ccccccCCcCCCccccCCccHHHHHHHhCCCcc
Q 040925 686 FGLAKFLSDHQLDTAVKTPSSSIGLKGTVGYVAPEYGMGSEASM---TGDIFTGRRPIDAVFNEGHSLHEFAKTALPEKV 762 (833)
Q Consensus 686 fG~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~---~~Di~s~~~~~~~~~~~g~~l~~~~~~~~p~~~ 762 (833)
||++...... ...||+.|+|||++.+..++. ++|||| +|+++++++++..|+..
T Consensus 157 ~~~~~~~~~~-------------~~~~t~~y~aPE~~~~~~~~~~~~~~Di~s----------lG~il~el~~g~~p~~~ 213 (271)
T 3kmu_A 157 ADVKFSFQSP-------------GRMYAPAWVAPEALQKKPEDTNRRSADMWS----------FAVLLWELVTREVPFAD 213 (271)
T ss_dssp GGSCCTTSCT-------------TCBSCGGGSCHHHHHSCGGGSCHHHHHHHH----------HHHHHHHHHHCSCTTTT
T ss_pred ccceeeeccc-------------CccCCccccChhhhccCCCCCCCchhhHHH----------HHHHHHHHHhCCCCccc
Confidence 9987643221 235899999999988765554 799999 88899999999888753
Q ss_pred cccccccchhhhccccchhhhhhhhchHHHHHHHHHHhhccCCCCCCCCCCHHHHHHHHHHhhh
Q 040925 763 MEIVDPSLLMEVMTNNSMIQEDKRVKTEECLNAIIRTGVLCSMESPFERMDMRDVVAKLCHTRE 826 (833)
Q Consensus 763 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~i~~ 826 (833)
....+ .......... ....+..+++.+.+++.+||+.||++|||++|+++.|+++.+
T Consensus 214 ~~~~~--~~~~~~~~~~-----~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~il~~L~~l~~ 270 (271)
T 3kmu_A 214 LSNME--IGMKVALEGL-----RPTIPPGISPHVSKLMKICMNEDPAKRPKFDMIVPILEKMQD 270 (271)
T ss_dssp SCHHH--HHHHHHHSCC-----CCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHCC
T ss_pred cChHH--HHHHHHhcCC-----CCCCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHhhc
Confidence 22111 1011110100 011123356678999999999999999999999999998865
No 160
>3ttj_A Mitogen-activated protein kinase 10; JNK3, protein kinase in transferase-transferase inhibitor complex; HET: JBI; 2.10A {Homo sapiens} PDB: 3tti_A* 1jnk_A*
Probab=100.00 E-value=9.5e-38 Score=349.03 Aligned_cols=260 Identities=18% Similarity=0.231 Sum_probs=196.4
Q ss_pred hcCCccCceeccCcceEEEEEEECCCceEEEEEEeecc--CCcchhHHHHHHHHHhhcCCCccceEeeEeecCCC-CCCc
Q 040925 530 TGEFSSSNMIGQGSFGYVYKGTLGEDEMIVAVKVINLK--YKGASRSFVAECEALRNIRHRNLIKIITICSSTDF-KGTD 606 (833)
Q Consensus 530 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~--~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~-~~~~ 606 (833)
.++|++.+.||+|+||.||+|++..+++.||||++... .....+.+.+|+.+++.++||||+++++++..... +...
T Consensus 61 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~~~~ 140 (464)
T 3ttj_A 61 LKRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIISLLNVFTPQKTLEEFQ 140 (464)
T ss_dssp ETTEEEEEEEEECSSCEEEEEEETTTTEEEEEEEEESGGGSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCCSTTTCC
T ss_pred cCCeEEEEEeecCCCeEEEEEEECCCCCEEEEEEECccccChHHHHHHHHHHHHHHhCCCCCCCcEEEEEccCCccccCC
Confidence 46899999999999999999999999999999999754 22335678899999999999999999999865432 3345
Q ss_pred eEeEEEEecCCCChhhhhccCCCccccccCCHHHHHHHHHHHHHHHHHHhhcCCCCceeeCCCCCCeeecCCCcEEEccc
Q 040925 607 FKAFVFEYMENGSLKDWLHQSDDQVEVCKLSLIQRVNIAIDVASAMEYLHHHCQPPMVHGDLKPSNVLLDHDMVAHVCDF 686 (833)
Q Consensus 607 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~gL~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kL~Df 686 (833)
..|+||||+++ ++.+.+.. .+++.+++.++.|++.||+|||+. ||+||||||+||+++.++.+||+||
T Consensus 141 ~~~lv~E~~~~-~l~~~~~~--------~l~~~~~~~~~~qil~aL~~lH~~---~iiHrDlkp~NIll~~~~~~kl~DF 208 (464)
T 3ttj_A 141 DVYLVMELMDA-NLCQVIQM--------ELDHERMSYLLYQMLCGIKHLHSA---GIIHRDLKPSNIVVKSDCTLKILDF 208 (464)
T ss_dssp EEEEEEECCSE-EHHHHHTS--------CCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTSCEEECCC
T ss_pred eEEEEEeCCCC-CHHHHHhh--------cCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCChHhEEEeCCCCEEEEEE
Confidence 78999999976 57777643 488999999999999999999999 9999999999999999999999999
Q ss_pred ccccccCcccccccccCCCccccccccccccCccccCCCCCCcccccccCCcCCCccccCCccHHHHHHHhCCCcccccc
Q 040925 687 GLAKFLSDHQLDTAVKTPSSSIGLKGTVGYVAPEYGMGSEASMTGDIFTGRRPIDAVFNEGHSLHEFAKTALPEKVMEIV 766 (833)
Q Consensus 687 G~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~s~~~~~~~~~~~g~~l~~~~~~~~p~~~~~~~ 766 (833)
|+|+...... .....+||+.|+|||++.+..++.++|||| .|+++++++++..|+...+..
T Consensus 209 G~a~~~~~~~---------~~~~~~gt~~y~aPE~~~~~~~~~~~DiwS----------lG~il~ell~g~~pF~g~~~~ 269 (464)
T 3ttj_A 209 GLARTAGTSF---------MMTPYVVTRYYRAPEVILGMGYKENVDIWS----------VGCIMGEMVRHKILFPGRDYI 269 (464)
T ss_dssp CCC-----CC---------CC----CCCTTCCHHHHTTCCCCTTHHHHH----------HHHHHHHHHHSSCSSCCSSHH
T ss_pred EeeeecCCCc---------ccCCCcccccccCHHHHcCCCCCHHHHHHH----------HHHHHHHHHhCCCCCCCCCHH
Confidence 9998654321 122357999999999999999999999999 788888888888876522211
Q ss_pred cc-------------cchh-------hhcccc-----ch--------hhhhhhhchHHHHHHHHHHhhccCCCCCCCCCC
Q 040925 767 DP-------------SLLM-------EVMTNN-----SM--------IQEDKRVKTEECLNAIIRTGVLCSMESPFERMD 813 (833)
Q Consensus 767 ~~-------------~~~~-------~~~~~~-----~~--------~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt 813 (833)
+. .... ...... .. ..+..........+.+.+++.+||..||++|||
T Consensus 270 ~~~~~i~~~lg~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dLl~~mL~~dP~~R~t 349 (464)
T 3ttj_A 270 DQWNKVIEQLGTPCPEFMKKLQPTVRNYVENRPKYAGLTFPKLFPDSLFPADSEHNKLKASQARDLLSKMLVIDPAKRIS 349 (464)
T ss_dssp HHHHHHHHHHCSCCHHHHTTSCHHHHHHHTTSCCCCCCCHHHHSCGGGSCCSSHHHHHHHHHHHHHHHHHSCSSTTTSCC
T ss_pred HHHHHHHHhcCCCCHHHHHHcchhhhhHhhcccccCCCChHHhCcccccccccccccccCHHHHHHHHHHcCCChhhCCC
Confidence 00 0000 000000 00 000001111223667899999999999999999
Q ss_pred HHHHHHH
Q 040925 814 MRDVVAK 820 (833)
Q Consensus 814 ~~eil~~ 820 (833)
++|+++.
T Consensus 350 a~e~L~H 356 (464)
T 3ttj_A 350 VDDALQH 356 (464)
T ss_dssp HHHHHTS
T ss_pred HHHHhcC
Confidence 9999875
No 161
>3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2 calmodulin-like EF...; structural genomics, protist parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa II}
Probab=100.00 E-value=4.7e-38 Score=340.03 Aligned_cols=270 Identities=21% Similarity=0.234 Sum_probs=204.4
Q ss_pred HHHHHHhcCCccCceeccCcceEEEEEEECCCceEEEEEEeecc-----CCcchhHHHHHHHHHhhcCCCccceEeeEee
Q 040925 524 AELSKATGEFSSSNMIGQGSFGYVYKGTLGEDEMIVAVKVINLK-----YKGASRSFVAECEALRNIRHRNLIKIITICS 598 (833)
Q Consensus 524 ~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~-----~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~ 598 (833)
+++....++|++.+.||+|+||.||+|++..+++.||+|+++.. .....+.+.+|++++++++||||+++++++.
T Consensus 19 ~~~~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~ 98 (345)
T 3hko_A 19 GSLLELQKKYHLKGAIGQGSYGVVRVAIENQTRAIRAIKIMNKNKIRQINPKDVERIKTEVRLMKKLHHPNIARLYEVYE 98 (345)
T ss_dssp BCHHHHHHHEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHC---CHHHHHHHHHHHHHHCCCTTBCCEEEEEE
T ss_pred chhhhhhhheeecceeeecCCeEEEEEEECCCCceEEEeehhhhhhcccCHHHHHHHHHHHHHHHhCCCCCcceeehhhc
Confidence 34556677899999999999999999999999999999998643 2344578999999999999999999999976
Q ss_pred cCCCCCCceEeEEEEecCCCChhhhhccCCCc----------------------------------cccccCCHHHHHHH
Q 040925 599 STDFKGTDFKAFVFEYMENGSLKDWLHQSDDQ----------------------------------VEVCKLSLIQRVNI 644 (833)
Q Consensus 599 ~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~----------------------------------~~~~~l~~~~~~~i 644 (833)
..+ ..++||||+++|+|.+++...... .....+++..++.+
T Consensus 99 ~~~-----~~~lv~e~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 173 (345)
T 3hko_A 99 DEQ-----YICLVMELCHGGHLLDKLNVFIDDSTGKCAMDVVKTQICPCPECNEEAINGSIHGFRESLDFVQREKLISNI 173 (345)
T ss_dssp CSS-----EEEEEEECCCSCBHHHHEEEEEETTTTEEEEEEECCCCCCSHHHHHHHHHSCC--CEEECCHHHHHHHHHHH
T ss_pred cCC-----eEEEEEeCCCCCcHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccHHHHHHH
Confidence 654 899999999999999999631100 00113467888999
Q ss_pred HHHHHHHHHHHhhcCCCCceeeCCCCCCeeecCCC--cEEEcccccccccCcccccccccCCCccccccccccccCcccc
Q 040925 645 AIDVASAMEYLHHHCQPPMVHGDLKPSNVLLDHDM--VAHVCDFGLAKFLSDHQLDTAVKTPSSSIGLKGTVGYVAPEYG 722 (833)
Q Consensus 645 ~~qi~~gL~~LH~~~~~~ivH~Dlkp~NIll~~~~--~~kL~DfG~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~ 722 (833)
+.|++.||+|||+. +|+||||||+||+++.++ .+||+|||+++.+....... ........||+.|+|||++
T Consensus 174 ~~qi~~~l~~LH~~---~ivH~Dlkp~NIll~~~~~~~~kl~Dfg~a~~~~~~~~~~----~~~~~~~~gt~~y~aPE~~ 246 (345)
T 3hko_A 174 MRQIFSALHYLHNQ---GICHRDIKPENFLFSTNKSFEIKLVDFGLSKEFYKLNNGE----YYGMTTKAGTPYFVAPEVL 246 (345)
T ss_dssp HHHHHHHHHHHHHT---TEECCCCCGGGEEESCSSSCCEEECCCTTCEEGGGTTCC------------CCCGGGCCHHHH
T ss_pred HHHHHHHHHHHHHC---CccccCCChhhEEEecCCCceEEEeeccccccccccCccc----cccccccCCCccccCchhh
Confidence 99999999999999 999999999999998776 89999999998654322111 1112235699999999998
Q ss_pred CC--CCCCcccccccCCcCCCccccCCccHHHHHHHhCCCcccccccccchhhhccccchhhhhhhhchHHHHHHHHHHh
Q 040925 723 MG--SEASMTGDIFTGRRPIDAVFNEGHSLHEFAKTALPEKVMEIVDPSLLMEVMTNNSMIQEDKRVKTEECLNAIIRTG 800 (833)
Q Consensus 723 ~~--~~~~~~~Di~s~~~~~~~~~~~g~~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li 800 (833)
.+ ..++.++|||| +|+++++++++..|+...... ............. .......+++.+.+++
T Consensus 247 ~~~~~~~~~~~Diws----------lG~il~el~~g~~pf~~~~~~--~~~~~~~~~~~~~---~~~~~~~~~~~~~~li 311 (345)
T 3hko_A 247 NTTNESYGPKCDAWS----------AGVLLHLLLMGAVPFPGVNDA--DTISQVLNKKLCF---ENPNYNVLSPLARDLL 311 (345)
T ss_dssp TCSSSCCCTHHHHHH----------HHHHHHHHHHSSCSSCCSSHH--HHHHHHHHCCCCT---TSGGGGGSCHHHHHHH
T ss_pred ccCCCCCCcHHHHHH----------HHHHHHHHHHCCCCCCCCChH--HHHHHHHhccccc---CCcccccCCHHHHHHH
Confidence 65 67899999999 888999999999987532211 1111111111100 1111223456788999
Q ss_pred hccCCCCCCCCCCHHHHHHH
Q 040925 801 VLCSMESPFERMDMRDVVAK 820 (833)
Q Consensus 801 ~~cl~~dP~~RPt~~eil~~ 820 (833)
.+||+.||++|||+.|+++.
T Consensus 312 ~~~l~~~p~~Rps~~~~l~h 331 (345)
T 3hko_A 312 SNLLNRNVDERFDAMRALQH 331 (345)
T ss_dssp HHHSCSCTTTSCCHHHHHHS
T ss_pred HHHcCCChhHCCCHHHHhcC
Confidence 99999999999999999874
No 162
>3llt_A Serine/threonine kinase-1, pflammer; lammer kinase, malaria, structural GE structural genomics consortium, SGC, transferase; HET: ANP; 2.50A {Plasmodium falciparum 3D7}
Probab=100.00 E-value=2.1e-38 Score=344.82 Aligned_cols=209 Identities=26% Similarity=0.342 Sum_probs=179.0
Q ss_pred CCccchHHHHHHhcCCccCceeccCcceEEEEEEECCCceEEEEEEeeccCCcchhHHHHHHHHHhhcC-----CCccce
Q 040925 518 FPMVSYAELSKATGEFSSSNMIGQGSFGYVYKGTLGEDEMIVAVKVINLKYKGASRSFVAECEALRNIR-----HRNLIK 592 (833)
Q Consensus 518 ~~~~~~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~-----h~niv~ 592 (833)
...+++.+.....++|++.+.||+|+||.||+|++..+++.||||+++.. ....+.+..|+++++.++ ||||++
T Consensus 22 ~~~~~~~~g~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~-~~~~~~~~~e~~~l~~l~~~~~~h~~iv~ 100 (360)
T 3llt_A 22 IVHFSWKKGMLLNNAFLVIRKMGDGTFGRVLLCQHIDNKKYYAVKVVRNI-KKYTRSAKIEADILKKIQNDDINNNNIVK 100 (360)
T ss_dssp GGSCCCCTTCEETTTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECSC-HHHHHHHHHHHHHHHHTCCCSTTGGGBCC
T ss_pred ceeeeeecceEecCEEEEEEEEcccCCeEEEEEEECCCCeEEEEEEeccc-hhhhhhhHHHHHHHHHhcccCCCCCCeec
Confidence 34556666666678999999999999999999999989999999999632 233466788999999996 999999
Q ss_pred EeeEeecCCCCCCceEeEEEEecCCCChhhhhccCCCccccccCCHHHHHHHHHHHHHHHHHHhhcCCCCceeeCCCCCC
Q 040925 593 IITICSSTDFKGTDFKAFVFEYMENGSLKDWLHQSDDQVEVCKLSLIQRVNIAIDVASAMEYLHHHCQPPMVHGDLKPSN 672 (833)
Q Consensus 593 ~~~~~~~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~gL~~LH~~~~~~ivH~Dlkp~N 672 (833)
+++++...+ ..++||||+ +++|.+++...... .+++.+++.++.|++.||+|||+. +|+||||||+|
T Consensus 101 ~~~~~~~~~-----~~~lv~e~~-~~~L~~~~~~~~~~----~~~~~~~~~i~~qi~~aL~~LH~~---~ivHrDlkp~N 167 (360)
T 3llt_A 101 YHGKFMYYD-----HMCLIFEPL-GPSLYEIITRNNYN----GFHIEDIKLYCIEILKALNYLRKM---SLTHTDLKPEN 167 (360)
T ss_dssp EEEEEEETT-----EEEEEECCC-CCBHHHHHHHTTTC----CCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGG
T ss_pred ccceeeECC-----eeEEEEcCC-CCCHHHHHHhcCCC----CCCHHHHHHHHHHHHHHHHHHHHC---CeeeCCCCccc
Confidence 999987655 899999999 88999999876532 589999999999999999999999 99999999999
Q ss_pred eeecC-------------------------CCcEEEcccccccccCcccccccccCCCccccccccccccCccccCCCCC
Q 040925 673 VLLDH-------------------------DMVAHVCDFGLAKFLSDHQLDTAVKTPSSSIGLKGTVGYVAPEYGMGSEA 727 (833)
Q Consensus 673 Ill~~-------------------------~~~~kL~DfG~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~ 727 (833)
|+++. ++.+||+|||+|+...... ....||+.|+|||++.+..+
T Consensus 168 Ill~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~DFG~a~~~~~~~-----------~~~~gt~~y~aPE~~~~~~~ 236 (360)
T 3llt_A 168 ILLDDPYFEKSLITVRRVTDGKKIQIYRTKSTGIKLIDFGCATFKSDYH-----------GSIINTRQYRAPEVILNLGW 236 (360)
T ss_dssp EEESCTTCCEEEEEEECTTTCCEEEEEEESCCCEEECCCTTCEETTSCC-----------CSCCSCGGGCCHHHHTTCCC
T ss_pred EEEccccccccccchhcccccccccccccCCCCEEEEeccCceecCCCC-----------cCccCcccccCcHHHcCCCC
Confidence 99975 7899999999998643321 13469999999999999999
Q ss_pred CcccccccCCcCCCccccCCccHHHHHHHhCCCc
Q 040925 728 SMTGDIFTGRRPIDAVFNEGHSLHEFAKTALPEK 761 (833)
Q Consensus 728 ~~~~Di~s~~~~~~~~~~~g~~l~~~~~~~~p~~ 761 (833)
+.++|||| .|+++++++++..|+.
T Consensus 237 ~~~~Diws----------lG~il~ell~g~~pf~ 260 (360)
T 3llt_A 237 DVSSDMWS----------FGCVLAELYTGSLLFR 260 (360)
T ss_dssp CTTHHHHH----------HHHHHHHHHHSSCSCC
T ss_pred CCccchHH----------HHHHHHHHHHCCCCCC
Confidence 99999999 7888888888888865
No 163
>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A*
Probab=100.00 E-value=1.7e-38 Score=354.99 Aligned_cols=250 Identities=23% Similarity=0.254 Sum_probs=195.3
Q ss_pred hcCCccCceeccCcceEEEEEEECCCceEEEEEEeecc---CCcchhHHHHHHHHHhhcCCCccceEeeEeecCCCCCCc
Q 040925 530 TGEFSSSNMIGQGSFGYVYKGTLGEDEMIVAVKVINLK---YKGASRSFVAECEALRNIRHRNLIKIITICSSTDFKGTD 606 (833)
Q Consensus 530 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~---~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~ 606 (833)
.++|++.+.||+|+||.||+|++..+++.||||+++.. .......+.+|+++++.++||||+++++++...+
T Consensus 147 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~----- 221 (446)
T 4ejn_A 147 MNEFEYLKLLGKGTFGKVILVKEKATGRYYAMKILKKEVIVAKDEVAHTLTENRVLQNSRHPFLTALKYSFQTHD----- 221 (446)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHC-------------CCCCCSCTTSCCEEEEEEETT-----
T ss_pred hHHcEEeEEEeeCcCEEEEEEEEcCCCCEEEEEEEEhhhhhhhHHHHHHHHHHHHHHhCCCCeEeeEEEEEeeCC-----
Confidence 46799999999999999999999999999999999743 2334456788999999999999999999987655
Q ss_pred eEeEEEEecCCCChhhhhccCCCccccccCCHHHHHHHHHHHHHHHHHHhh-cCCCCceeeCCCCCCeeecCCCcEEEcc
Q 040925 607 FKAFVFEYMENGSLKDWLHQSDDQVEVCKLSLIQRVNIAIDVASAMEYLHH-HCQPPMVHGDLKPSNVLLDHDMVAHVCD 685 (833)
Q Consensus 607 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~gL~~LH~-~~~~~ivH~Dlkp~NIll~~~~~~kL~D 685 (833)
..++||||+++|+|.+++.... .+++..++.++.|++.||+|||+ . ||+||||||+||+++.++.+||+|
T Consensus 222 ~~~lv~e~~~~~~L~~~l~~~~------~~~~~~~~~~~~qi~~aL~~LH~~~---giiHrDlkp~NIll~~~~~~kl~D 292 (446)
T 4ejn_A 222 RLCFVMEYANGGELFFHLSRER------VFSEDRARFYGAEIVSALDYLHSEK---NVVYRDLKLENLMLDKDGHIKITD 292 (446)
T ss_dssp EEEEEECCCSSCBHHHHHHHHS------CCCHHHHHHHHHHHHHHHHHHHHHT---CCCCCCCCGGGEEECSSSCEEECC
T ss_pred EEEEEEeeCCCCcHHHHHHhcC------CCCHHHHHHHHHHHHHHHHHHhhcC---CEEECCCCHHHEEECCCCCEEEcc
Confidence 8999999999999999997654 68999999999999999999998 8 999999999999999999999999
Q ss_pred cccccccCcccccccccCCCccccccccccccCccccCCCCCCcccccccCCcCCCccccCCccHHHHHHHhCCCccccc
Q 040925 686 FGLAKFLSDHQLDTAVKTPSSSIGLKGTVGYVAPEYGMGSEASMTGDIFTGRRPIDAVFNEGHSLHEFAKTALPEKVMEI 765 (833)
Q Consensus 686 fG~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~s~~~~~~~~~~~g~~l~~~~~~~~p~~~~~~ 765 (833)
||+|+....... .....+||+.|+|||++.+..++.++|||| +|+++++++++..|+.....
T Consensus 293 FG~a~~~~~~~~--------~~~~~~gt~~y~aPE~~~~~~~~~~~Diws----------lG~il~ell~g~~Pf~~~~~ 354 (446)
T 4ejn_A 293 FGLCKEGIKDGA--------TMKTFCGTPEYLAPEVLEDNDYGRAVDWWG----------LGVVMYEMMCGRLPFYNQDH 354 (446)
T ss_dssp CCCCCTTCC-------------CCSSSCGGGCCHHHHHTSCCCTHHHHHH----------HHHHHHHHHHSSCSSCCSSH
T ss_pred CCCceeccCCCc--------ccccccCCccccCHhhcCCCCCCCccchhh----------hHHHHHHHhhCCCCCCCCCH
Confidence 999985433211 122357999999999999999999999999 88899999999998753221
Q ss_pred ccccchhhhccccchhhhhhhhchHHHHHHHHHHhhccCCCCCCCCC-----CHHHHHHH
Q 040925 766 VDPSLLMEVMTNNSMIQEDKRVKTEECLNAIIRTGVLCSMESPFERM-----DMRDVVAK 820 (833)
Q Consensus 766 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RP-----t~~eil~~ 820 (833)
. ........... ..+..+++.+.+++.+||+.||++|| |++|+++.
T Consensus 355 ~--~~~~~i~~~~~-------~~p~~~~~~~~~li~~~L~~dP~~R~~~~~~t~~ell~h 405 (446)
T 4ejn_A 355 E--KLFELILMEEI-------RFPRTLGPEAKSLLSGLLKKDPKQRLGGGSEDAKEIMQH 405 (446)
T ss_dssp H--HHHHHHHHCCC-------CCCTTSCHHHHHHHHHHTCSSTTTSTTCSTTTHHHHHTS
T ss_pred H--HHHHHHHhCCC-------CCCccCCHHHHHHHHHHcccCHHHhCCCCCCCHHHHHhC
Confidence 1 11111111111 11223456788999999999999999 99999864
No 164
>3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=7.9e-38 Score=330.88 Aligned_cols=267 Identities=23% Similarity=0.372 Sum_probs=208.1
Q ss_pred CCccCceeccCcceEEEEEEECCCc---eEEEEEEeeccCC-cchhHHHHHHHHHhhcCCCccceEeeEeecCCCCCCce
Q 040925 532 EFSSSNMIGQGSFGYVYKGTLGEDE---MIVAVKVINLKYK-GASRSFVAECEALRNIRHRNLIKIITICSSTDFKGTDF 607 (833)
Q Consensus 532 ~y~~~~~lg~G~~g~Vy~~~~~~~~---~~vavK~~~~~~~-~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~ 607 (833)
.|.+.+.||+|+||.||+|++..++ ..||+|.++.... ...+.+.+|+.++++++||||+++++++...+ ..
T Consensus 22 ~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~----~~ 97 (298)
T 3pls_A 22 VTHSDRVIGKGHFGVVYHGEYIDQAQNRIQCAIKSLSRITEMQQVEAFLREGLLMRGLNHPNVLALIGIMLPPE----GL 97 (298)
T ss_dssp EEEEEEEEEEETTEEEEEEEEECSSSCEEEEEEEEETTCCSHHHHHHHHHHHHHHHTCCCTTBCCCCEEECCSS----SC
T ss_pred EEccCceeccCCCceEEEEEEecCCCceeeeeeeeccccccHHHHHHHHHHHHHHHhCCCCCeeeEEEEEecCC----CC
Confidence 4666799999999999999975443 4799999864332 23467899999999999999999999985443 34
Q ss_pred EeEEEEecCCCChhhhhccCCCccccccCCHHHHHHHHHHHHHHHHHHhhcCCCCceeeCCCCCCeeecCCCcEEEcccc
Q 040925 608 KAFVFEYMENGSLKDWLHQSDDQVEVCKLSLIQRVNIAIDVASAMEYLHHHCQPPMVHGDLKPSNVLLDHDMVAHVCDFG 687 (833)
Q Consensus 608 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~gL~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kL~DfG 687 (833)
.++||||+.+|+|.+++..... .+++.+++.++.|++.||+|||+. ||+||||||+||+++.++.+||+|||
T Consensus 98 ~~~v~e~~~~~~L~~~~~~~~~-----~~~~~~~~~i~~qi~~~l~~LH~~---~i~H~dikp~Nili~~~~~~kl~Dfg 169 (298)
T 3pls_A 98 PHVLLPYMCHGDLLQFIRSPQR-----NPTVKDLISFGLQVARGMEYLAEQ---KFVHRDLAARNCMLDESFTVKVADFG 169 (298)
T ss_dssp CEEEECCCTTCBHHHHHHCTTC-----CCBHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECTTCCEEECCTT
T ss_pred cEEEEecccCCCHHHHHhcccc-----CCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCCcceEEEcCCCcEEeCcCC
Confidence 5899999999999999987432 688999999999999999999999 99999999999999999999999999
Q ss_pred cccccCcccccccccCCCccccccccccccCccccCCCCCCcccccccCCcCCCccccCCccHHHHHHHhCCCccccccc
Q 040925 688 LAKFLSDHQLDTAVKTPSSSIGLKGTVGYVAPEYGMGSEASMTGDIFTGRRPIDAVFNEGHSLHEFAKTALPEKVMEIVD 767 (833)
Q Consensus 688 ~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~s~~~~~~~~~~~g~~l~~~~~~~~p~~~~~~~~ 767 (833)
+++......... ........||+.|+|||.+.+..++.++|||| +|+++++++++..|+.... +
T Consensus 170 ~~~~~~~~~~~~----~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~s----------lG~il~~l~~g~~~~~~~~--~ 233 (298)
T 3pls_A 170 LARDILDREYYS----VQQHRHARLPVKWTALESLQTYRFTTKSDVWS----------FGVLLWELLTRGAPPYRHI--D 233 (298)
T ss_dssp SSCTTTTGGGGC----SCCSSCTTCGGGGSCHHHHTTCCCCHHHHHHH----------HHHHHHHHHHTSCCTTTTS--C
T ss_pred CcccccCCcccc----cccCcCCCCCccccChhhhccCCCChhhchhh----------HHHHHHHHhhCCCCCCccC--C
Confidence 998765433211 11223356899999999999999999999999 7888899988655543111 1
Q ss_pred ccchhhhccccchhhhhhhhchHHHHHHHHHHhhccCCCCCCCCCCHHHHHHHHHHhhhhhhcC
Q 040925 768 PSLLMEVMTNNSMIQEDKRVKTEECLNAIIRTGVLCSMESPFERMDMRDVVAKLCHTRETFLGR 831 (833)
Q Consensus 768 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~i~~~~~~~ 831 (833)
+........... ....+..+++.+.+++.+||+.||++|||++++++.|+++.+.+.+.
T Consensus 234 ~~~~~~~~~~~~-----~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~ll~~l~~~~~~l~~~ 292 (298)
T 3pls_A 234 PFDLTHFLAQGR-----RLPQPEYCPDSLYQVMQQCWEADPAVRPTFRVLVGEVEQIVSALLGD 292 (298)
T ss_dssp GGGHHHHHHTTC-----CCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHhhcCC-----CCCCCccchHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHHHHhcc
Confidence 111111111110 01112234567899999999999999999999999999999887654
No 165
>3a62_A Ribosomal protein S6 kinase beta-1; kinase domain, inactive, active, ribosomal S6 kinase, activation, alternative initiation, ATP-binding; HET: TPO STU; 2.35A {Homo sapiens} PDB: 3a61_A* 3a60_A*
Probab=100.00 E-value=4.3e-38 Score=336.71 Aligned_cols=250 Identities=20% Similarity=0.237 Sum_probs=193.0
Q ss_pred hcCCccCceeccCcceEEEEEEEC---CCceEEEEEEeeccC----CcchhHHHHHHHHHhhcCCCccceEeeEeecCCC
Q 040925 530 TGEFSSSNMIGQGSFGYVYKGTLG---EDEMIVAVKVINLKY----KGASRSFVAECEALRNIRHRNLIKIITICSSTDF 602 (833)
Q Consensus 530 ~~~y~~~~~lg~G~~g~Vy~~~~~---~~~~~vavK~~~~~~----~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~ 602 (833)
.++|++.+.||+|+||.||+|++. .+++.||+|+++... ......+.+|++++++++||||+++++++...+
T Consensus 16 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~- 94 (327)
T 3a62_A 16 PECFELLRVLGKGGYGKVFQVRKVTGANTGKIFAMKVLKKAMIVRNAKDTAHTKAERNILEEVKHPFIVDLIYAFQTGG- 94 (327)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEECSSTTTTCEEEEEEECCC--------------HHHHHHHCCCTTBCCEEEEEECSS-
T ss_pred HHHeEEEEEEEeCCCEEEEEEEEeccCCCCcEEEEEEEEHHHhhhhhhHHHHHHHHHHHHHhCCCCCccceeEEEEcCC-
Confidence 468999999999999999999984 589999999997542 223456788999999999999999999976654
Q ss_pred CCCceEeEEEEecCCCChhhhhccCCCccccccCCHHHHHHHHHHHHHHHHHHhhcCCCCceeeCCCCCCeeecCCCcEE
Q 040925 603 KGTDFKAFVFEYMENGSLKDWLHQSDDQVEVCKLSLIQRVNIAIDVASAMEYLHHHCQPPMVHGDLKPSNVLLDHDMVAH 682 (833)
Q Consensus 603 ~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~gL~~LH~~~~~~ivH~Dlkp~NIll~~~~~~k 682 (833)
..|+||||+++|+|.+++.... .+++..++.++.|++.||.|||+. ||+||||||+||+++.++.+|
T Consensus 95 ----~~~lv~e~~~~~~L~~~l~~~~------~~~~~~~~~~~~qi~~al~~lH~~---~ivH~Dlkp~Nill~~~~~~k 161 (327)
T 3a62_A 95 ----KLYLILEYLSGGELFMQLEREG------IFMEDTACFYLAEISMALGHLHQK---GIIYRDLKPENIMLNHQGHVK 161 (327)
T ss_dssp ----CEEEEEECCTTEEHHHHHHHHS------SCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCTTTEEECTTSCEE
T ss_pred ----EEEEEEeCCCCCcHHHHHHhCC------CCCHHHHHHHHHHHHHHHHHHHhC---CEEcccCCHHHeEECCCCcEE
Confidence 8999999999999999997654 689999999999999999999999 999999999999999999999
Q ss_pred EcccccccccCcccccccccCCCccccccccccccCccccCCCCCCcccccccCCcCCCccccCCccHHHHHHHhCCCcc
Q 040925 683 VCDFGLAKFLSDHQLDTAVKTPSSSIGLKGTVGYVAPEYGMGSEASMTGDIFTGRRPIDAVFNEGHSLHEFAKTALPEKV 762 (833)
Q Consensus 683 L~DfG~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~s~~~~~~~~~~~g~~l~~~~~~~~p~~~ 762 (833)
|+|||+++....... ......||+.|+|||++.+..++.++|||| .|+++++++++..|+..
T Consensus 162 l~Dfg~~~~~~~~~~--------~~~~~~gt~~y~aPE~~~~~~~~~~~Diws----------lG~il~el~~g~~pf~~ 223 (327)
T 3a62_A 162 LTDFGLCKESIHDGT--------VTHTFCGTIEYMAPEILMRSGHNRAVDWWS----------LGALMYDMLTGAPPFTG 223 (327)
T ss_dssp ECCCSCC------------------CTTSSCCTTSCHHHHTTSCCCTHHHHHH----------HHHHHHHHHHSSCSCCC
T ss_pred EEeCCcccccccCCc--------cccccCCCcCccCHhhCcCCCCCCcccchh----------HHHHHHHHHHCCCCCCC
Confidence 999999975433211 122356999999999999999999999999 88899999999988753
Q ss_pred cccccccchhhhccccchhhhhhhhchHHHHHHHHHHhhccCCCCCCCCC-----CHHHHHHH
Q 040925 763 MEIVDPSLLMEVMTNNSMIQEDKRVKTEECLNAIIRTGVLCSMESPFERM-----DMRDVVAK 820 (833)
Q Consensus 763 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RP-----t~~eil~~ 820 (833)
.... ........... ..+..+++.+.+++.+||..||++|| +++|+++.
T Consensus 224 ~~~~--~~~~~i~~~~~-------~~p~~~~~~~~~li~~~L~~dp~~R~~~~~~~~~e~l~h 277 (327)
T 3a62_A 224 ENRK--KTIDKILKCKL-------NLPPYLTQEARDLLKKLLKRNAASRLGAGPGDAGEVQAH 277 (327)
T ss_dssp SSHH--HHHHHHHHTCC-------CCCTTSCHHHHHHHHHHSCSCGGGSTTSSTTTHHHHHHS
T ss_pred CCHH--HHHHHHHhCCC-------CCCCCCCHHHHHHHHHHHhcCHhhccCCCCCCHHHHHcC
Confidence 2211 11111111111 11123456788999999999999999 77788764
No 166
>3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK, STK18, PSI, structural genomics, protein structure initiative; HET: ANP; 2.25A {Homo sapiens}
Probab=100.00 E-value=6.3e-38 Score=327.99 Aligned_cols=252 Identities=22% Similarity=0.340 Sum_probs=184.0
Q ss_pred HhcCCccCceeccCcceEEEEEEECCCceEEEEEEeeccC---CcchhHHHHHHHHHhhcCCCccceEeeEeecCCCCCC
Q 040925 529 ATGEFSSSNMIGQGSFGYVYKGTLGEDEMIVAVKVINLKY---KGASRSFVAECEALRNIRHRNLIKIITICSSTDFKGT 605 (833)
Q Consensus 529 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~ 605 (833)
..++|++.+.||+|+||.||+|++..+++.||||+++... ....+.+.+|+.++++++||||+++++++....
T Consensus 9 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~---- 84 (278)
T 3cok_A 9 KIEDFKVGNLLGKGSFAGVYRAESIHTGLEVAIKMIDKKAMYKAGMVQRVQNEVKIHCQLKHPSILELYNYFEDSN---- 84 (278)
T ss_dssp SGGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTBCCTTBCCEEEEEECSS----
T ss_pred ccccceeeeeecCCCceEEEEEEEccCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHhCCCCCeEeEEEEEccCC----
Confidence 3468999999999999999999998899999999996432 223467899999999999999999999976554
Q ss_pred ceEeEEEEecCCCChhhhhccCCCccccccCCHHHHHHHHHHHHHHHHHHhhcCCCCceeeCCCCCCeeecCCCcEEEcc
Q 040925 606 DFKAFVFEYMENGSLKDWLHQSDDQVEVCKLSLIQRVNIAIDVASAMEYLHHHCQPPMVHGDLKPSNVLLDHDMVAHVCD 685 (833)
Q Consensus 606 ~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~gL~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kL~D 685 (833)
..++||||+++++|.+++..... .+++.+++.++.|++.||+|||+. +|+||||||+||+++.++.+||+|
T Consensus 85 -~~~lv~e~~~~~~L~~~l~~~~~-----~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dl~p~Nili~~~~~~kl~d 155 (278)
T 3cok_A 85 -YVYLVLEMCHNGEMNRYLKNRVK-----PFSENEARHFMHQIITGMLYLHSH---GILHRDLTLSNLLLTRNMNIKIAD 155 (278)
T ss_dssp -EEEEEEECCTTEEHHHHHHTCSS-----CCCHHHHHHHHHHHHHHHHHHHHT---TEECSSCCGGGEEECTTCCEEECC
T ss_pred -eEEEEEecCCCCcHHHHHhhccC-----CCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHEEEcCCCCEEEEe
Confidence 89999999999999999986532 689999999999999999999999 999999999999999999999999
Q ss_pred cccccccCcccccccccCCCccccccccccccCccccCCCCCCcccccccCCcCCCccccCCccHHHHHHHhCCCccccc
Q 040925 686 FGLAKFLSDHQLDTAVKTPSSSIGLKGTVGYVAPEYGMGSEASMTGDIFTGRRPIDAVFNEGHSLHEFAKTALPEKVMEI 765 (833)
Q Consensus 686 fG~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~s~~~~~~~~~~~g~~l~~~~~~~~p~~~~~~ 765 (833)
||++........ ......||+.|+|||++.+..++.++|||| .|+++++++++..|+.....
T Consensus 156 fg~~~~~~~~~~--------~~~~~~~~~~y~aPE~~~~~~~~~~~Di~s----------lG~il~~l~~g~~p~~~~~~ 217 (278)
T 3cok_A 156 FGLATQLKMPHE--------KHYTLCGTPNYISPEIATRSAHGLESDVWS----------LGCMFYTLLIGRPPFDTDTV 217 (278)
T ss_dssp CTTCEECC------------------------------------CTHHHH----------HHHHHHHHHHSSCSSCCCSC
T ss_pred ecceeeccCCCC--------cceeccCCCCcCCcchhcCCCCCchhhHHH----------HHHHHHHHHhCCCCCCChhH
Confidence 999986543221 112246999999999999988999999999 88899999999988763221
Q ss_pred ccccchhhhccccchhhhhhhhchHHHHHHHHHHhhccCCCCCCCCCCHHHHHHH
Q 040925 766 VDPSLLMEVMTNNSMIQEDKRVKTEECLNAIIRTGVLCSMESPFERMDMRDVVAK 820 (833)
Q Consensus 766 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~ 820 (833)
.+ .......... ..+..++..+.+++.+||+.||++|||++|+++.
T Consensus 218 ~~--~~~~~~~~~~-------~~~~~~~~~~~~li~~~l~~dp~~Rps~~~~l~h 263 (278)
T 3cok_A 218 KN--TLNKVVLADY-------EMPSFLSIEAKDLIHQLLRRNPADRLSLSSVLDH 263 (278)
T ss_dssp C-------CCSSCC-------CCCTTSCHHHHHHHHHHSCSSGGGSCCHHHHTTS
T ss_pred HH--HHHHHhhccc-------CCccccCHHHHHHHHHHcccCHhhCCCHHHHhcC
Confidence 11 0000010100 0112245678899999999999999999999863
No 167
>2vd5_A DMPK protein; serine/threonine-protein kinase, kinase, transferase, ATP-BI nucleotide-binding, cardiac contractility, muscle different; HET: BI8; 2.80A {Homo sapiens}
Probab=100.00 E-value=1.9e-38 Score=347.66 Aligned_cols=264 Identities=19% Similarity=0.205 Sum_probs=206.2
Q ss_pred chHHHHHHhcCCccCceeccCcceEEEEEEECCCceEEEEEEeeccC---CcchhHHHHHHHHHhhcCCCccceEeeEee
Q 040925 522 SYAELSKATGEFSSSNMIGQGSFGYVYKGTLGEDEMIVAVKVINLKY---KGASRSFVAECEALRNIRHRNLIKIITICS 598 (833)
Q Consensus 522 ~~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~~~~~~~ 598 (833)
...+.....++|++.+.||+|+||.||+|+++.+++.||||+++... ....+.+.+|..++..++||||+++++++.
T Consensus 52 ~~~~~~~~~~~f~~~~~lG~G~fG~V~~~~~~~~~~~vAiK~l~k~~~~~~~~~~~~~~E~~il~~~~hp~Iv~l~~~~~ 131 (412)
T 2vd5_A 52 RLKEVRLQRDDFEILKVIGRGAFSEVAVVKMKQTGQVYAMKIMNKWDMLKRGEVSCFREERDVLVNGDRRWITQLHFAFQ 131 (412)
T ss_dssp HHHHHSCCGGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHHGGGCCHHHHHHHHHHSCTTTBCCEEEEEE
T ss_pred hhhhccCChhhEEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEeHHHhhhHHHHHHHHHHHHHHHhcCCCCeeeEEEEEe
Confidence 34555566789999999999999999999999999999999996431 223456889999999999999999999976
Q ss_pred cCCCCCCceEeEEEEecCCCChhhhhccCCCccccccCCHHHHHHHHHHHHHHHHHHhhcCCCCceeeCCCCCCeeecCC
Q 040925 599 STDFKGTDFKAFVFEYMENGSLKDWLHQSDDQVEVCKLSLIQRVNIAIDVASAMEYLHHHCQPPMVHGDLKPSNVLLDHD 678 (833)
Q Consensus 599 ~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~gL~~LH~~~~~~ivH~Dlkp~NIll~~~ 678 (833)
+.+ ..|+||||+++|+|.+++...+. .+++..++.++.||+.||+|||+. +|+||||||+||+++.+
T Consensus 132 ~~~-----~~~lVmE~~~gg~L~~~l~~~~~-----~l~~~~~~~~~~qi~~aL~~LH~~---giiHrDLKp~NILld~~ 198 (412)
T 2vd5_A 132 DEN-----YLYLVMEYYVGGDLLTLLSKFGE-----RIPAEMARFYLAEIVMAIDSVHRL---GYVHRDIKPDNILLDRC 198 (412)
T ss_dssp CSS-----EEEEEECCCCSCBHHHHHHHHSS-----CCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTT
T ss_pred eCC-----EEEEEEcCCCCCcHHHHHHhcCC-----CCCHHHHHHHHHHHHHHHHHHHHC---CeeecccCHHHeeecCC
Confidence 654 89999999999999999976432 689999999999999999999999 99999999999999999
Q ss_pred CcEEEcccccccccCcccccccccCCCccccccccccccCccccC-------CCCCCcccccccCCcCCCccccCCccHH
Q 040925 679 MVAHVCDFGLAKFLSDHQLDTAVKTPSSSIGLKGTVGYVAPEYGM-------GSEASMTGDIFTGRRPIDAVFNEGHSLH 751 (833)
Q Consensus 679 ~~~kL~DfG~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~-------~~~~~~~~Di~s~~~~~~~~~~~g~~l~ 751 (833)
+.+||+|||+|+........ .....+||+.|+|||++. +..++.++|||| .|+++|
T Consensus 199 g~vkL~DFGla~~~~~~~~~-------~~~~~~Gt~~Y~APE~l~~~~~~~~~~~~~~~~DiwS----------lGvily 261 (412)
T 2vd5_A 199 GHIRLADFGSCLKLRADGTV-------RSLVAVGTPDYLSPEILQAVGGGPGTGSYGPECDWWA----------LGVFAY 261 (412)
T ss_dssp SCEEECCCTTCEECCTTSCE-------ECSSCCSCGGGCCHHHHHHHHTCTTCSEECTHHHHHH----------HHHHHH
T ss_pred CCEEEeechhheeccCCCcc-------ccceeccccCcCCHHHHhhcccCcCCCCCChHHhhhH----------HhHHHH
Confidence 99999999999876443211 112357999999999987 457899999999 889999
Q ss_pred HHHHHhCCCcccccccccchhhhccccchhhhhhhhchHHHHHHHHHHhhccCCCCCCCC---CCHHHHHHH
Q 040925 752 EFAKTALPEKVMEIVDPSLLMEVMTNNSMIQEDKRVKTEECLNAIIRTGVLCSMESPFER---MDMRDVVAK 820 (833)
Q Consensus 752 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~R---Pt~~eil~~ 820 (833)
+++++..|+...... ............. ........+++.+.+++.+||. +|++| |+++|++++
T Consensus 262 elltG~~Pf~~~~~~--~~~~~i~~~~~~~--~~p~~~~~~s~~~~dli~~lL~-~p~~Rlgr~~~~ei~~H 328 (412)
T 2vd5_A 262 EMFYGQTPFYADSTA--ETYGKIVHYKEHL--SLPLVDEGVPEEARDFIQRLLC-PPETRLGRGGAGDFRTH 328 (412)
T ss_dssp HHHHSSCTTCCSSHH--HHHHHHHTHHHHC--CCC----CCCHHHHHHHHTTSS-CGGGCTTTTTHHHHHTS
T ss_pred HHHhCCCCCCCCCHH--HHHHHHHhcccCc--CCCccccCCCHHHHHHHHHHcC-ChhhcCCCCCHHHHhcC
Confidence 999999987532211 1111111100000 0000112356778999999999 99998 589998764
No 168
>3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural genomics, structural genom consortium, SGC, ATP-binding, membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A 3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A*
Probab=100.00 E-value=2.6e-38 Score=331.37 Aligned_cols=260 Identities=20% Similarity=0.347 Sum_probs=202.9
Q ss_pred HhcCCccCceeccCcceEEEEEEECC---CceEEEEEEeeccCC-cchhHHHHHHHHHhhcCCCccceEeeEeecCCCCC
Q 040925 529 ATGEFSSSNMIGQGSFGYVYKGTLGE---DEMIVAVKVINLKYK-GASRSFVAECEALRNIRHRNLIKIITICSSTDFKG 604 (833)
Q Consensus 529 ~~~~y~~~~~lg~G~~g~Vy~~~~~~---~~~~vavK~~~~~~~-~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~ 604 (833)
..++|++.+.||+|+||.||+|++.. ++..||+|.++.... ...+.+.+|++++++++||||+++++++...
T Consensus 10 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~---- 85 (281)
T 3cc6_A 10 AREDVVLNRILGEGFFGEVYEGVYTNHKGEKINVAVKTCKKDCTLDNKEKFMSEAVIMKNLDHPHIVKLIGIIEEE---- 85 (281)
T ss_dssp CGGGEEEEEEEEECSSSEEEEEEEECTTCCEEEEEEEECCTTSCHHHHHHHHHHHHHHHHHCCTTBCCEEEEECSS----
T ss_pred cccceEEEEEEEecCCeeEEEeEEcCCCCCcceEEEEecccccCchHHHHHHHHHHHHHhCCCCCcceEEEEEcCC----
Confidence 34689999999999999999998643 455799999975422 3456789999999999999999999996433
Q ss_pred CceEeEEEEecCCCChhhhhccCCCccccccCCHHHHHHHHHHHHHHHHHHhhcCCCCceeeCCCCCCeeecCCCcEEEc
Q 040925 605 TDFKAFVFEYMENGSLKDWLHQSDDQVEVCKLSLIQRVNIAIDVASAMEYLHHHCQPPMVHGDLKPSNVLLDHDMVAHVC 684 (833)
Q Consensus 605 ~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~gL~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kL~ 684 (833)
..++||||+++|+|.+++..... .+++..++.++.|++.||+|||+. +|+||||||+||+++.++.+||+
T Consensus 86 --~~~~v~e~~~~~~L~~~l~~~~~-----~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~kl~ 155 (281)
T 3cc6_A 86 --PTWIIMELYPYGELGHYLERNKN-----SLKVLTLVLYSLQICKAMAYLESI---NCVHRDIAVRNILVASPECVKLG 155 (281)
T ss_dssp --SCEEEEECCTTCBHHHHHHHHTT-----TCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCSGGGEEEEETTEEEEC
T ss_pred --CCEEEEecCCCCCHHHHHHhccc-----cCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCccceEEECCCCcEEeC
Confidence 45899999999999999976432 589999999999999999999999 99999999999999999999999
Q ss_pred ccccccccCcccccccccCCCccccccccccccCccccCCCCCCcccccccCCcCCCccccCCccHHHHHH-HhCCCccc
Q 040925 685 DFGLAKFLSDHQLDTAVKTPSSSIGLKGTVGYVAPEYGMGSEASMTGDIFTGRRPIDAVFNEGHSLHEFAK-TALPEKVM 763 (833)
Q Consensus 685 DfG~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~s~~~~~~~~~~~g~~l~~~~~-~~~p~~~~ 763 (833)
|||++.......... .....+|+.|+|||++.+..++.++|||| +|++++++++ +..|+...
T Consensus 156 Dfg~~~~~~~~~~~~-------~~~~~~~~~y~aPE~~~~~~~~~~~Di~s----------lG~il~~llt~g~~p~~~~ 218 (281)
T 3cc6_A 156 DFGLSRYIEDEDYYK-------ASVTRLPIKWMSPESINFRRFTTASDVWM----------FAVCMWEILSFGKQPFFWL 218 (281)
T ss_dssp CCCGGGCC----------------CCCCCGGGCCHHHHHHCCCCHHHHHHH----------HHHHHHHHHTTTCCTTTTS
T ss_pred ccCCCcccccccccc-------cccCCCCcceeCchhhccCCCCchhccHH----------HHHHHHHHHhCCCCCcccC
Confidence 999998765432111 12235789999999998888999999999 7888888887 77776522
Q ss_pred ccccccchhhhccccchhhhhhhhchHHHHHHHHHHhhccCCCCCCCCCCHHHHHHHHHHhhhh
Q 040925 764 EIVDPSLLMEVMTNNSMIQEDKRVKTEECLNAIIRTGVLCSMESPFERMDMRDVVAKLCHTRET 827 (833)
Q Consensus 764 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~i~~~ 827 (833)
...+ ......... ....+..+++.+.+++.+||..||++|||+.|+++.|+.+.+.
T Consensus 219 ~~~~--~~~~~~~~~------~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~ell~~L~~~~~~ 274 (281)
T 3cc6_A 219 ENKD--VIGVLEKGD------RLPKPDLCPPVLYTLMTRCWDYDPSDRPRFTELVCSLSDVYQM 274 (281)
T ss_dssp CGGG--HHHHHHHTC------CCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred ChHH--HHHHHhcCC------CCCCCCCCCHHHHHHHHHHccCCchhCcCHHHHHHHHHHHHHh
Confidence 2111 111110000 0111223456789999999999999999999999999998764
No 169
>1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene homolog; kinase, structure, inhibitor, STI-571, gleevec, transferase activator; HET: STI; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A*
Probab=100.00 E-value=3e-38 Score=336.61 Aligned_cols=269 Identities=21% Similarity=0.357 Sum_probs=210.1
Q ss_pred HhcCCccCceeccCcceEEEEEEE-----CCCceEEEEEEeeccCC-cchhHHHHHHHHHhhc-CCCccceEeeEeecCC
Q 040925 529 ATGEFSSSNMIGQGSFGYVYKGTL-----GEDEMIVAVKVINLKYK-GASRSFVAECEALRNI-RHRNLIKIITICSSTD 601 (833)
Q Consensus 529 ~~~~y~~~~~lg~G~~g~Vy~~~~-----~~~~~~vavK~~~~~~~-~~~~~~~~E~~~l~~l-~h~niv~~~~~~~~~~ 601 (833)
..++|++.+.||+|+||.||+|++ ..+++.||||+++.... ...+.+.+|+++++++ +||||+++++++...+
T Consensus 21 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~i~~~~~~~~~~~ 100 (313)
T 1t46_A 21 PRNRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLGNHMNIVNLLGACTIGG 100 (313)
T ss_dssp CGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSS
T ss_pred ChhhhhHHHhhCccCCcceEEEEEeeccccchhhhhHHHhcCcchhHHHHHHHHHHHHHHhhcccCCCeeeEEEEEecCC
Confidence 346899999999999999999985 45788999999975433 2346789999999999 8999999999976554
Q ss_pred CCCCceEeEEEEecCCCChhhhhccCCCc------------cccccCCHHHHHHHHHHHHHHHHHHhhcCCCCceeeCCC
Q 040925 602 FKGTDFKAFVFEYMENGSLKDWLHQSDDQ------------VEVCKLSLIQRVNIAIDVASAMEYLHHHCQPPMVHGDLK 669 (833)
Q Consensus 602 ~~~~~~~~lv~e~~~~gsL~~~l~~~~~~------------~~~~~l~~~~~~~i~~qi~~gL~~LH~~~~~~ivH~Dlk 669 (833)
..++||||+++|+|.+++...... .....+++.+++.++.|++.||+|||+. +|+|||||
T Consensus 101 -----~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dlk 172 (313)
T 1t46_A 101 -----PTLVITEYCCYGDLLNFLRRKRDSFICSKTSPAIMEDDELALDLEDLLSFSYQVAKGMAFLASK---NCIHRDLA 172 (313)
T ss_dssp -----SCEEEEECCTTEEHHHHHHHTTTTC--------------CCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCS
T ss_pred -----CcEEEEecCCCCCHHHHHHhcccccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCc
Confidence 789999999999999999865421 0112489999999999999999999999 99999999
Q ss_pred CCCeeecCCCcEEEcccccccccCcccccccccCCCccccccccccccCccccCCCCCCcccccccCCcCCCccccCCcc
Q 040925 670 PSNVLLDHDMVAHVCDFGLAKFLSDHQLDTAVKTPSSSIGLKGTVGYVAPEYGMGSEASMTGDIFTGRRPIDAVFNEGHS 749 (833)
Q Consensus 670 p~NIll~~~~~~kL~DfG~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~s~~~~~~~~~~~g~~ 749 (833)
|+||+++.++.+||+|||+++......... ......||+.|+|||++.+..++.++|||| +|++
T Consensus 173 p~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~------~~~~~~~~~~y~aPE~~~~~~~~~~~Di~s----------lG~i 236 (313)
T 1t46_A 173 ARNILLTHGRITKICDFGLARDIKNDSNYV------VKGNARLPVKWMAPESIFNCVYTFESDVWS----------YGIF 236 (313)
T ss_dssp GGGEEEETTTEEEECCCGGGSCTTSCTTSE------ECSSSEECGGGCCHHHHHHCCCCHHHHHHH----------HHHH
T ss_pred cceEEEcCCCCEEEccccccccccccccce------eccCCCCcceeeChHHhcCCCCChHHHHHH----------HHHH
Confidence 999999999999999999998765432111 112245788999999998889999999999 7888
Q ss_pred HHHHHH-HhCCCcccccccccchhhhccccchhhhhhhhchHHHHHHHHHHhhccCCCCCCCCCCHHHHHHHHHHhhhhh
Q 040925 750 LHEFAK-TALPEKVMEIVDPSLLMEVMTNNSMIQEDKRVKTEECLNAIIRTGVLCSMESPFERMDMRDVVAKLCHTRETF 828 (833)
Q Consensus 750 l~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~i~~~~ 828 (833)
++++++ +..|+...... ... ........ ....+..++..+.+++.+||..||++|||++|+++.|+++.+..
T Consensus 237 l~ellt~g~~p~~~~~~~-~~~-~~~~~~~~-----~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~~L~~~~~~~ 309 (313)
T 1t46_A 237 LWELFSLGSSPYPGMPVD-SKF-YKMIKEGF-----RMLSPEHAPAEMYDIMKTCWDADPLKRPTFKQIVQLIEKQISES 309 (313)
T ss_dssp HHHHHTTTCCSSTTCCSS-HHH-HHHHHHTC-----CCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHT
T ss_pred HHHHHhCCCCCCCcccch-hHH-HHHhccCC-----CCCCcccCCHHHHHHHHHHcCCCchhCcCHHHHHHHHHHHHHHh
Confidence 888887 77776532211 111 11110000 01112234567899999999999999999999999999987653
No 170
>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens}
Probab=100.00 E-value=4.4e-38 Score=334.36 Aligned_cols=245 Identities=22% Similarity=0.218 Sum_probs=191.9
Q ss_pred cCCccCceeccCcceEEEEEEECCCceEEEEEEeeccCCc--chhHHHHHHHHHhhc-CCCccceEeeEeecCCCCCCce
Q 040925 531 GEFSSSNMIGQGSFGYVYKGTLGEDEMIVAVKVINLKYKG--ASRSFVAECEALRNI-RHRNLIKIITICSSTDFKGTDF 607 (833)
Q Consensus 531 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~--~~~~~~~E~~~l~~l-~h~niv~~~~~~~~~~~~~~~~ 607 (833)
++|++.++||+|+||+||+|++..+++.||||++...... .......|+..+.++ +||||+++++++.... .
T Consensus 57 ~~y~~~~~LG~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~~~~~~~h~~iv~l~~~~~~~~-----~ 131 (311)
T 3p1a_A 57 QSFQRLSRLGHGSYGEVFKVRSKEDGRLYAVKRSMSPFRGPKDRARKLAEVGSHEKVGQHPCCVRLEQAWEEGG-----I 131 (311)
T ss_dssp HHEEEEEEEEEETTEEEEEEEETTTSCEEEEEEESSSCCSHHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETT-----E
T ss_pred hheeeeheeccCCCeEEEEEEECCCCeEEEEEEecccccChHHHHHHHHHHHHHHHhcCCCcEEEEEEEEEeCC-----E
Confidence 5799999999999999999999999999999998644322 233455666666666 8999999999986655 8
Q ss_pred EeEEEEecCCCChhhhhccCCCccccccCCHHHHHHHHHHHHHHHHHHhhcCCCCceeeCCCCCCeeecCCCcEEEcccc
Q 040925 608 KAFVFEYMENGSLKDWLHQSDDQVEVCKLSLIQRVNIAIDVASAMEYLHHHCQPPMVHGDLKPSNVLLDHDMVAHVCDFG 687 (833)
Q Consensus 608 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~gL~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kL~DfG 687 (833)
.++||||+ +|+|.+++..... .+++..++.++.|++.||+|||+. +|+||||||+||+++.++.+||+|||
T Consensus 132 ~~lv~e~~-~~~L~~~~~~~~~-----~l~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dikp~NIll~~~~~~kl~DFG 202 (311)
T 3p1a_A 132 LYLQTELC-GPSLQQHCEAWGA-----SLPEAQVWGYLRDTLLALAHLHSQ---GLVHLDVKPANIFLGPRGRCKLGDFG 202 (311)
T ss_dssp EEEEEECC-CCBHHHHHHHHCS-----CCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECGGGCEEECCCT
T ss_pred EEEEEecc-CCCHHHHHHhcCC-----CCCHHHHHHHHHHHHHHHHHHHHC---CEecCCCCHHHEEECCCCCEEEccce
Confidence 99999999 6799998876542 599999999999999999999999 99999999999999999999999999
Q ss_pred cccccCcccccccccCCCccccccccccccCccccCCCCCCcccccccCCcCCCccccCCccHHHHHHHhCCCccccccc
Q 040925 688 LAKFLSDHQLDTAVKTPSSSIGLKGTVGYVAPEYGMGSEASMTGDIFTGRRPIDAVFNEGHSLHEFAKTALPEKVMEIVD 767 (833)
Q Consensus 688 ~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~s~~~~~~~~~~~g~~l~~~~~~~~p~~~~~~~~ 767 (833)
++........ .....||+.|+|||++.+ .++.++|||| +|+++++++++..++...+..+
T Consensus 203 ~a~~~~~~~~---------~~~~~gt~~y~aPE~~~~-~~~~~~Diws----------lG~il~el~~g~~~~~~~~~~~ 262 (311)
T 3p1a_A 203 LLVELGTAGA---------GEVQEGDPRYMAPELLQG-SYGTAADVFS----------LGLTILEVACNMELPHGGEGWQ 262 (311)
T ss_dssp TCEECC---------------CCCCCGGGCCGGGGGT-CCSTHHHHHH----------HHHHHHHHHHTCCCCSSHHHHH
T ss_pred eeeecccCCC---------CcccCCCccccCHhHhcC-CCCchhhHHH----------HHHHHHHHHhCCCCCCCccHHH
Confidence 9986644321 122459999999999876 7999999999 8888899988855443211110
Q ss_pred ccchhhhccccchhhhhhhhchHHHHHHHHHHhhccCCCCCCCCCCHHHHHH
Q 040925 768 PSLLMEVMTNNSMIQEDKRVKTEECLNAIIRTGVLCSMESPFERMDMRDVVA 819 (833)
Q Consensus 768 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~ 819 (833)
....... .......+++.+.+++.+||+.||++|||++|+++
T Consensus 263 -----~~~~~~~-----~~~~~~~~~~~l~~li~~~L~~dP~~Rpt~~ell~ 304 (311)
T 3p1a_A 263 -----QLRQGYL-----PPEFTAGLSSELRSVLVMMLEPDPKLRATAEALLA 304 (311)
T ss_dssp -----HHTTTCC-----CHHHHTTSCHHHHHHHHHHSCSSTTTSCCHHHHHT
T ss_pred -----HHhccCC-----CcccccCCCHHHHHHHHHHcCCChhhCcCHHHHHh
Confidence 0000000 01112234667899999999999999999999986
No 171
>2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B*
Probab=100.00 E-value=2.9e-38 Score=331.77 Aligned_cols=258 Identities=19% Similarity=0.316 Sum_probs=202.4
Q ss_pred HhcCCccCceeccCcceEEEEEEECCCceEEEEEEeeccCCcchhHHHHHHHHHhhcCCCccceEeeEeecCCC------
Q 040925 529 ATGEFSSSNMIGQGSFGYVYKGTLGEDEMIVAVKVINLKYKGASRSFVAECEALRNIRHRNLIKIITICSSTDF------ 602 (833)
Q Consensus 529 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~------ 602 (833)
..++|++.+.||+|+||.||+|++..+++.||+|+++... +.+.+|++++++++||||+++++++....+
T Consensus 9 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~----~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~ 84 (284)
T 2a19_B 9 FGMDFKEIELIGSGGFGQVFKAKHRIDGKTYVIKRVKYNN----EKAEREVKALAKLDHVNIVHYNGCWDGFDYDPETSS 84 (284)
T ss_dssp HHHHEEEEEEEECSSSCCEEEEEETTTCCEEEEEEEECCS----GGGHHHHHHHHHCCCTTBCCEEEEEEEEEEC-----
T ss_pred hccccceeeeeccCCceEEEEEEEcCCCeEEEEEEecccc----HHHHHHHHHHHhCCCCCEEEEeeeEeccccCccccc
Confidence 3457999999999999999999999899999999997432 467889999999999999999998754211
Q ss_pred -----CCCceEeEEEEecCCCChhhhhccCCCccccccCCHHHHHHHHHHHHHHHHHHhhcCCCCceeeCCCCCCeeecC
Q 040925 603 -----KGTDFKAFVFEYMENGSLKDWLHQSDDQVEVCKLSLIQRVNIAIDVASAMEYLHHHCQPPMVHGDLKPSNVLLDH 677 (833)
Q Consensus 603 -----~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~gL~~LH~~~~~~ivH~Dlkp~NIll~~ 677 (833)
......++||||+++|+|.+++...... .+++..++.++.|++.||.|||+. +|+||||||+||+++.
T Consensus 85 ~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~----~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~dlkp~Nil~~~ 157 (284)
T 2a19_B 85 KNSSRSKTKCLFIQMEFCDKGTLEQWIEKRRGE----KLDKVLALELFEQITKGVDYIHSK---KLINRDLKPSNIFLVD 157 (284)
T ss_dssp ----CCEEEEEEEEECCCCSCBHHHHHHHGGGS----CCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEEE
T ss_pred ccccccCcceEEEEEeccCCCCHHHHHhhccCC----CCCHHHHHHHHHHHHHHHHHHHhC---CeeeccCCHHHEEEcC
Confidence 1234689999999999999999764322 689999999999999999999999 9999999999999999
Q ss_pred CCcEEEcccccccccCcccccccccCCCccccccccccccCccccCCCCCCcccccccCCcCCCccccCCccHHHHHHHh
Q 040925 678 DMVAHVCDFGLAKFLSDHQLDTAVKTPSSSIGLKGTVGYVAPEYGMGSEASMTGDIFTGRRPIDAVFNEGHSLHEFAKTA 757 (833)
Q Consensus 678 ~~~~kL~DfG~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~s~~~~~~~~~~~g~~l~~~~~~~ 757 (833)
++.+||+|||++........ .....||+.|+|||++.+..++.++|||| +|+++++++++.
T Consensus 158 ~~~~kl~Dfg~~~~~~~~~~---------~~~~~~~~~y~aPE~~~~~~~~~~~Di~s----------lG~il~~l~~~~ 218 (284)
T 2a19_B 158 TKQVKIGDFGLVTSLKNDGK---------RTRSKGTLRYMSPEQISSQDYGKEVDLYA----------LGLILAELLHVC 218 (284)
T ss_dssp TTEEEECCCTTCEESSCCSC---------CCCCCSCCTTSCHHHHHCSCCCTHHHHHH----------HHHHHHHHHSCC
T ss_pred CCCEEECcchhheecccccc---------ccccCCcccccChhhhccCCCcchhhhHH----------HHHHHHHHHhcC
Confidence 99999999999987654321 12245999999999999999999999999 566666666655
Q ss_pred CCCcccccccccchhhhccccchhhhhhhhchHHHHHHHHHHhhccCCCCCCCCCCHHHHHHHHHHhhhhhh
Q 040925 758 LPEKVMEIVDPSLLMEVMTNNSMIQEDKRVKTEECLNAIIRTGVLCSMESPFERMDMRDVVAKLCHTRETFL 829 (833)
Q Consensus 758 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~i~~~~~ 829 (833)
.|+..... ........ .....++..+.+++.+||..||++|||+.|+++.+..+.....
T Consensus 219 ~~~~~~~~----~~~~~~~~---------~~~~~~~~~~~~li~~~l~~dp~~Rps~~e~l~~l~~~~~~~~ 277 (284)
T 2a19_B 219 DTAFETSK----FFTDLRDG---------IISDIFDKKEKTLLQKLLSKKPEDRPNTSEILRTLTVWKKSPE 277 (284)
T ss_dssp SSHHHHHH----HHHHHHTT---------CCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHTC---
T ss_pred CcchhHHH----HHHHhhcc---------cccccCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHhhCCC
Confidence 44321110 00000000 0111234567899999999999999999999999998876543
No 172
>3rp9_A Mitogen-activated protein kinase; structural genomics, structural genomics consortium, SGC, TR; 2.40A {Toxoplasma gondii}
Probab=100.00 E-value=1e-37 Score=350.35 Aligned_cols=205 Identities=23% Similarity=0.370 Sum_probs=157.5
Q ss_pred cCCccCceeccCcceEEEEEEECCCceEEEEEEeeccCC--cchhHHHHHHHHHhhcCCCccceEeeEeecCCCCCCceE
Q 040925 531 GEFSSSNMIGQGSFGYVYKGTLGEDEMIVAVKVINLKYK--GASRSFVAECEALRNIRHRNLIKIITICSSTDFKGTDFK 608 (833)
Q Consensus 531 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~--~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~ 608 (833)
++|++.+.||+|+||.||+|++..+++.||||++..... ...+.+.+|++++++++||||+++++++.....+.....
T Consensus 53 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~i~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~~~~~ 132 (458)
T 3rp9_A 53 DRYEIRHLIGTGSYGHVCEAYDKLEKRVVAIKKILRVFEDLIDCKRILREIAILNRLNHDHVVKVLDIVIPKDVEKFDEL 132 (458)
T ss_dssp TTEEECCC-------CEEEEEECC--CEEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCTTTCCCE
T ss_pred CCeEEeeEeeecCCeEEEEEEECCCCcEEEEEEechhhcCHHHHHHHHHHHHHHHhCCCCCCCceEEEEecCCcccCceE
Confidence 689999999999999999999999999999999964322 234678999999999999999999999876655566689
Q ss_pred eEEEEecCCCChhhhhccCCCccccccCCHHHHHHHHHHHHHHHHHHhhcCCCCceeeCCCCCCeeecCCCcEEEccccc
Q 040925 609 AFVFEYMENGSLKDWLHQSDDQVEVCKLSLIQRVNIAIDVASAMEYLHHHCQPPMVHGDLKPSNVLLDHDMVAHVCDFGL 688 (833)
Q Consensus 609 ~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~gL~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kL~DfG~ 688 (833)
|+||||+. |+|.+++.... .+++..++.++.||+.||+|||+. +||||||||+|||++.++.+||+|||+
T Consensus 133 ~lv~e~~~-~~L~~~~~~~~------~l~~~~~~~~~~qi~~aL~~LH~~---~iiHrDlKp~NILl~~~~~~kl~DFGl 202 (458)
T 3rp9_A 133 YVVLEIAD-SDFKKLFRTPV------YLTELHIKTLLYNLLVGVKYVHSA---GILHRDLKPANCLVNQDCSVKVCDFGL 202 (458)
T ss_dssp EEEECCCS-EEHHHHHHSSC------CCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCCGGGEEECTTCCEEECCCTT
T ss_pred EEEEeccc-cchhhhcccCC------CCCHHHHHHHHHHHHHHHHHHHhC---CcCCCCCChhhEEECCCCCEeeccccc
Confidence 99999985 69999997654 689999999999999999999999 999999999999999999999999999
Q ss_pred ccccCcccccccc-------------------cCCCccccccccccccCcccc-CCCCCCcccccccCCcCCCccccCCc
Q 040925 689 AKFLSDHQLDTAV-------------------KTPSSSIGLKGTVGYVAPEYG-MGSEASMTGDIFTGRRPIDAVFNEGH 748 (833)
Q Consensus 689 a~~~~~~~~~~~~-------------------~~~~~~~~~~gt~~y~aPE~~-~~~~~~~~~Di~s~~~~~~~~~~~g~ 748 (833)
|+........... .........+||+.|+|||++ .+..++.++|||| .|+
T Consensus 203 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~~~~~~DiwS----------lG~ 272 (458)
T 3rp9_A 203 ARTVDYPENGNSQLPISPREDDMNLVTFPHTKNLKRQLTGHVVTRWYRAPELILLQENYTEAIDVWS----------IGC 272 (458)
T ss_dssp CBCTTSCTTCCCCCC---------------------------CCCTTCCHHHHTTCCCCCTHHHHHH----------HHH
T ss_pred chhccCccccccccccCccccccccccccccccccccccCCcccccccChHHhhCCCCCCcHhHHHH----------HHH
Confidence 9876532211000 000123456799999999975 5667999999999 566
Q ss_pred cHHHHHH
Q 040925 749 SLHEFAK 755 (833)
Q Consensus 749 ~l~~~~~ 755 (833)
+++++++
T Consensus 273 il~ellt 279 (458)
T 3rp9_A 273 IFAELLN 279 (458)
T ss_dssp HHHHHHT
T ss_pred HHHHHHH
Confidence 6666665
No 173
>1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A* 3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A* 3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A* 3ad6_A* 3kmm_A* 1qpd_A* ...
Probab=100.00 E-value=2.3e-38 Score=331.51 Aligned_cols=262 Identities=24% Similarity=0.423 Sum_probs=207.4
Q ss_pred HhcCCccCceeccCcceEEEEEEECCCceEEEEEEeeccCCcchhHHHHHHHHHhhcCCCccceEeeEeecCCCCCCceE
Q 040925 529 ATGEFSSSNMIGQGSFGYVYKGTLGEDEMIVAVKVINLKYKGASRSFVAECEALRNIRHRNLIKIITICSSTDFKGTDFK 608 (833)
Q Consensus 529 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~ 608 (833)
..++|++.+.||+|+||.||+|.+. ++..||||+++... ...+.+.+|++++++++||||+++++++... ..
T Consensus 11 ~~~~y~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~------~~ 82 (279)
T 1qpc_A 11 PRETLKLVERLGAGQFGEVWMGYYN-GHTKVAVKSLKQGS-MSPDAFLAEANLMKQLQHQRLVRLYAVVTQE------PI 82 (279)
T ss_dssp CGGGEEEEEEEEEETTEEEEEEEET-TTEEEEEEEECTTS-SCHHHHHHHHHHHHHCCCTTBCCEEEEECSS------SC
T ss_pred CHHhhhheeeecCCCCeEEEEEEEc-CCcEEEEEEecCCc-ccHHHHHHHHHHHHhCCCcCcceEEEEEcCC------Cc
Confidence 4468999999999999999999986 67789999997443 3457899999999999999999999987432 47
Q ss_pred eEEEEecCCCChhhhhccCCCccccccCCHHHHHHHHHHHHHHHHHHhhcCCCCceeeCCCCCCeeecCCCcEEEccccc
Q 040925 609 AFVFEYMENGSLKDWLHQSDDQVEVCKLSLIQRVNIAIDVASAMEYLHHHCQPPMVHGDLKPSNVLLDHDMVAHVCDFGL 688 (833)
Q Consensus 609 ~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~gL~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kL~DfG~ 688 (833)
++||||+++|+|.+++..... ..+++.+++.++.|++.||+|||+. +|+||||||+||+++.++.+||+|||+
T Consensus 83 ~~v~e~~~~~~L~~~l~~~~~----~~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~dikp~Nil~~~~~~~kl~Dfg~ 155 (279)
T 1qpc_A 83 YIITEYMENGSLVDFLKTPSG----IKLTINKLLDMAAQIAEGMAFIEER---NYIHRDLRAANILVSDTLSCKIADFGL 155 (279)
T ss_dssp EEEEECCTTCBHHHHTTSHHH----HTCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTSCEEECCCTT
T ss_pred EEEEecCCCCCHHHHHhcCCC----CCCCHHHHHHHHHHHHHHHHHHHHC---CeeccCCCHhhEEEcCCCCEEECCCcc
Confidence 899999999999999976431 2589999999999999999999999 999999999999999999999999999
Q ss_pred ccccCcccccccccCCCccccccccccccCccccCCCCCCcccccccCCcCCCccccCCccHHHHHH-HhCCCccccccc
Q 040925 689 AKFLSDHQLDTAVKTPSSSIGLKGTVGYVAPEYGMGSEASMTGDIFTGRRPIDAVFNEGHSLHEFAK-TALPEKVMEIVD 767 (833)
Q Consensus 689 a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~s~~~~~~~~~~~g~~l~~~~~-~~~p~~~~~~~~ 767 (833)
+.......... .....+|+.|+|||++.+..++.++|||| +|++++++++ +..|+.....
T Consensus 156 ~~~~~~~~~~~-------~~~~~~~~~y~aPE~~~~~~~~~~~Di~s----------lG~il~el~~~g~~p~~~~~~-- 216 (279)
T 1qpc_A 156 ARLIEDNEYTA-------REGAKFPIKWTAPEAINYGTFTIKSDVWS----------FGILLTEIVTHGRIPYPGMTN-- 216 (279)
T ss_dssp CEECSSSCEEC-------CTTCCCCTTTSCHHHHHHCEECHHHHHHH----------HHHHHHHHHTTTCCSSTTCCH--
T ss_pred cccccCccccc-------ccCCCCccCccChhhhccCCCCchhhhHH----------HHHHHHHHHhCCCCCCcccCH--
Confidence 98765432211 11235788999999998888999999999 7888888887 7777642111
Q ss_pred ccchhhhccccchhhhhhhhchHHHHHHHHHHhhccCCCCCCCCCCHHHHHHHHHHhhhhhhc
Q 040925 768 PSLLMEVMTNNSMIQEDKRVKTEECLNAIIRTGVLCSMESPFERMDMRDVVAKLCHTRETFLG 830 (833)
Q Consensus 768 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~i~~~~~~ 830 (833)
........... ....+..+++.+.+++.+||..||++|||++++++.|+++.....+
T Consensus 217 ~~~~~~~~~~~------~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~l~~~~~~~~~ 273 (279)
T 1qpc_A 217 PEVIQNLERGY------RMVRPDNCPEELYQLMRLCWKERPEDRPTFDYLRSVLEDFFTATEG 273 (279)
T ss_dssp HHHHHHHHTTC------CCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHhccc------CCCCcccccHHHHHHHHHHhccChhhCCCHHHHHHHHHHHHHhccC
Confidence 11111111100 0111223456789999999999999999999999999999876544
No 174
>4agu_A Cyclin-dependent kinase-like 1; transferase, phospho-mimetic; HET: D15; 2.40A {Homo sapiens}
Probab=100.00 E-value=6e-38 Score=333.91 Aligned_cols=259 Identities=21% Similarity=0.307 Sum_probs=196.4
Q ss_pred hcCCccCceeccCcceEEEEEEECCCceEEEEEEeeccCCc--chhHHHHHHHHHhhcCCCccceEeeEeecCCCCCCce
Q 040925 530 TGEFSSSNMIGQGSFGYVYKGTLGEDEMIVAVKVINLKYKG--ASRSFVAECEALRNIRHRNLIKIITICSSTDFKGTDF 607 (833)
Q Consensus 530 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~--~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~ 607 (833)
.++|++.+.||+|+||.||+|++..+++.||||++...... ..+.+.+|++++++++||||+++++++.... .
T Consensus 2 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~-----~ 76 (311)
T 4agu_A 2 MEKYEKIGKIGEGSYGVVFKCRNRDTGQIVAIKKFLESEDDPVIKKIALREIRMLKQLKHPNLVNLLEVFRRKR-----R 76 (311)
T ss_dssp -CCEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECCCCC-HHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETT-----E
T ss_pred cccceEeeEEeecCCeEEEEEEeCCCCcEEEEEEeeccccchHHHHHHHHHHHHHHhCCCCCccchhheeecCC-----e
Confidence 36899999999999999999999989999999998644322 2456889999999999999999999976654 8
Q ss_pred EeEEEEecCCCChhhhhccCCCccccccCCHHHHHHHHHHHHHHHHHHhhcCCCCceeeCCCCCCeeecCCCcEEEcccc
Q 040925 608 KAFVFEYMENGSLKDWLHQSDDQVEVCKLSLIQRVNIAIDVASAMEYLHHHCQPPMVHGDLKPSNVLLDHDMVAHVCDFG 687 (833)
Q Consensus 608 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~gL~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kL~DfG 687 (833)
.++||||+++++|.+++.... .+++..+..++.|++.||+|||+. ||+||||||+||+++.++.+||+|||
T Consensus 77 ~~lv~e~~~~~~l~~~~~~~~------~~~~~~~~~i~~~l~~~l~~lH~~---~ivH~dlkp~Nil~~~~~~~kl~Dfg 147 (311)
T 4agu_A 77 LHLVFEYCDHTVLHELDRYQR------GVPEHLVKSITWQTLQAVNFCHKH---NCIHRDVKPENILITKHSVIKLCDFG 147 (311)
T ss_dssp EEEEEECCSEEHHHHHHHTSS------CCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTSCEEECCCT
T ss_pred EEEEEEeCCCchHHHHHhhhc------CCCHHHHHHHHHHHHHHHHHHHHC---CCcCCCCChhhEEEcCCCCEEEeeCC
Confidence 999999999999999887654 689999999999999999999999 99999999999999999999999999
Q ss_pred cccccCcccccccccCCCccccccccccccCccccCC-CCCCcccccccCCcCCCccccCCccHHHHHHHhCCCcccccc
Q 040925 688 LAKFLSDHQLDTAVKTPSSSIGLKGTVGYVAPEYGMG-SEASMTGDIFTGRRPIDAVFNEGHSLHEFAKTALPEKVMEIV 766 (833)
Q Consensus 688 ~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Di~s~~~~~~~~~~~g~~l~~~~~~~~p~~~~~~~ 766 (833)
++........ ......||+.|+|||++.+ ..++.++|||| .|+++++++++..|+......
T Consensus 148 ~~~~~~~~~~--------~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~s----------lG~il~~l~~g~~p~~~~~~~ 209 (311)
T 4agu_A 148 FARLLTGPSD--------YYDDEVATRWYRSPELLVGDTQYGPPVDVWA----------IGCVFAELLSGVPLWPGKSDV 209 (311)
T ss_dssp TCEECC--------------------GGGCCHHHHHTCSCCCTHHHHHH----------HHHHHHHHHHSSCSCCCSSHH
T ss_pred CchhccCccc--------ccCCCcCCccccChHHHhcCCCCCcchhhHH----------HHHHHHHHHhCCCCCCCCCHH
Confidence 9987653221 1123468999999999876 66899999999 788888999988876522211
Q ss_pred cccchh-hhcc-----------------ccchhh----hhhhhchHHHHHHHHHHhhccCCCCCCCCCCHHHHHHH
Q 040925 767 DPSLLM-EVMT-----------------NNSMIQ----EDKRVKTEECLNAIIRTGVLCSMESPFERMDMRDVVAK 820 (833)
Q Consensus 767 ~~~~~~-~~~~-----------------~~~~~~----~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~ 820 (833)
+..... .... ...... .........++..+.+++.+||+.||++|||++|+++.
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~h 285 (311)
T 4agu_A 210 DQLYLIRKTLGDLIPRHQQVFSTNQYFSGVKIPDPEDMEPLELKFPNISYPALGLLKGCLHMDPTERLTCEQLLHH 285 (311)
T ss_dssp HHHHHHHHHHCSCCHHHHHHHHTCGGGTTCCCCCCSSCCCHHHHCTTCCHHHHHHHHHHCCSSTTTSCCHHHHHTS
T ss_pred HHHHHHHHHhcccccccccccccccccccCcCCCccccchhhhhcccccHHHHHHHHHHccCChhhcCCHHHHhcC
Confidence 110000 0000 000000 00001112345678899999999999999999999864
No 175
>3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* 4e20_A* 4e1z_A*
Probab=100.00 E-value=2.5e-38 Score=337.52 Aligned_cols=272 Identities=23% Similarity=0.336 Sum_probs=207.9
Q ss_pred CC-ccCceeccCcceEEEEEEE----CCCceEEEEEEeeccCC-cchhHHHHHHHHHhhcCCCccceEeeEeecCCCCCC
Q 040925 532 EF-SSSNMIGQGSFGYVYKGTL----GEDEMIVAVKVINLKYK-GASRSFVAECEALRNIRHRNLIKIITICSSTDFKGT 605 (833)
Q Consensus 532 ~y-~~~~~lg~G~~g~Vy~~~~----~~~~~~vavK~~~~~~~-~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~ 605 (833)
+| ++.+.||+|+||.||+|.+ ..+++.||||+++.... ...+.+.+|++++++++||||+++++++...+ .
T Consensus 31 r~~~~~~~lG~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~---~ 107 (318)
T 3lxp_A 31 RYLKKIRDLGEGHFGKVSLYCYDPTNDGTGEMVAVKALKADAGPQHRSGWKQEIDILRTLYHEHIIKYKGCCEDAG---A 107 (318)
T ss_dssp GGEEEEEEEEECSSEEEEEEEECSCC--CCEEEEEEEECTTCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETT---T
T ss_pred HHHhhhheecCCCCeEEEEEEEccCCCCCCcEEEEEEeccccChHHHHHHHHHHHHHHhCCCcchhhEEEEEecCC---C
Confidence 45 9999999999999988765 34789999999975432 23467899999999999999999999987542 3
Q ss_pred ceEeEEEEecCCCChhhhhccCCCccccccCCHHHHHHHHHHHHHHHHHHhhcCCCCceeeCCCCCCeeecCCCcEEEcc
Q 040925 606 DFKAFVFEYMENGSLKDWLHQSDDQVEVCKLSLIQRVNIAIDVASAMEYLHHHCQPPMVHGDLKPSNVLLDHDMVAHVCD 685 (833)
Q Consensus 606 ~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~gL~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kL~D 685 (833)
...++||||+++|+|.+++... .+++.+++.++.|++.||+|||+. +|+||||||+||+++.++.+||+|
T Consensus 108 ~~~~lv~e~~~~~~L~~~l~~~-------~~~~~~~~~i~~~l~~~l~~LH~~---~ivH~Dikp~Nil~~~~~~~kl~D 177 (318)
T 3lxp_A 108 ASLQLVMEYVPLGSLRDYLPRH-------SIGLAQLLLFAQQICEGMAYLHAQ---HYIHRDLAARNVLLDNDRLVKIGD 177 (318)
T ss_dssp TEEEEEECCCTTCBHHHHGGGS-------CCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTCCEEECC
T ss_pred ceEEEEEecccCCcHHHHHhhC-------CCCHHHHHHHHHHHHHHHHHHHhC---CccCCCCchheEEEcCCCCEEECC
Confidence 4789999999999999999764 489999999999999999999999 999999999999999999999999
Q ss_pred cccccccCcccccccccCCCccccccccccccCccccCCCCCCcccccccCCcCCCccccCCccHHHHHHHhCCCccccc
Q 040925 686 FGLAKFLSDHQLDTAVKTPSSSIGLKGTVGYVAPEYGMGSEASMTGDIFTGRRPIDAVFNEGHSLHEFAKTALPEKVMEI 765 (833)
Q Consensus 686 fG~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~s~~~~~~~~~~~g~~l~~~~~~~~p~~~~~~ 765 (833)
||+++......... .......||+.|+|||++.+..++.++|||| .|+++++++++..|+.....
T Consensus 178 fg~a~~~~~~~~~~-----~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~s----------lG~il~~ll~g~~p~~~~~~ 242 (318)
T 3lxp_A 178 FGLAKAVPEGHEYY-----RVREDGDSPVFWYAPECLKEYKFYYASDVWS----------FGVTLYELLTHCDSSQSPPT 242 (318)
T ss_dssp GGGCEECCTTCSEE-----EC---CCCCGGGCCHHHHHHCEEEHHHHHHH----------HHHHHHHHHTTTCGGGSHHH
T ss_pred cccccccccccccc-----ccccCCCCCceeeChHHhcCCCCCcHHHHHH----------HHHHHHHHHhCCCcccccch
Confidence 99998765432111 1112345889999999999989999999999 77888888888777652211
Q ss_pred ccccch------hhhc-cccchhhhhhhhchHHHHHHHHHHhhccCCCCCCCCCCHHHHHHHHHHhhhhhhcC
Q 040925 766 VDPSLL------MEVM-TNNSMIQEDKRVKTEECLNAIIRTGVLCSMESPFERMDMRDVVAKLCHTRETFLGR 831 (833)
Q Consensus 766 ~~~~~~------~~~~-~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~i~~~~~~~ 831 (833)
...... .... .............+..++..+.+++.+||+.||++|||++|+++.|+.+.+.+.+.
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~l~~~~~~~ 315 (318)
T 3lxp_A 243 KFLELIGIAQGQMTVLRLTELLERGERLPRPDKCPAEVYHLMKNCWETEASFRPTFENLIPILKTVHEKYQGQ 315 (318)
T ss_dssp HHHHHHCSCCHHHHHHHHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHHHC-
T ss_pred hhhhhhcccccchhHHHHHHHHhcccCCCCCccccHHHHHHHHHHcCCCcccCcCHHHHHHHHHHHHHhhccC
Confidence 000000 0000 00000000011122345678999999999999999999999999999999887653
No 176
>2qr7_A Ribosomal protein S6 kinase alpha-3; kinase domain, RSK2, autoinhibitory, ATP-binding, nucleotide phosphorylation, serine/threonine-protein kinase; 2.00A {Mus musculus} PDB: 2qr8_A 4d9t_A* 4d9u_A* 3rny_A 2wnt_A
Probab=100.00 E-value=2.3e-38 Score=340.06 Aligned_cols=253 Identities=23% Similarity=0.264 Sum_probs=199.8
Q ss_pred HhcCCccCceeccCcceEEEEEEECCCceEEEEEEeeccCCcchhHHHHHHHHHhhc-CCCccceEeeEeecCCCCCCce
Q 040925 529 ATGEFSSSNMIGQGSFGYVYKGTLGEDEMIVAVKVINLKYKGASRSFVAECEALRNI-RHRNLIKIITICSSTDFKGTDF 607 (833)
Q Consensus 529 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~~~~~~~~~~~~~~~~ 607 (833)
..++|++.+.||+|+||.||+|+++.+++.||||+++.... ...+|++++.++ +||||+++++++.+.. .
T Consensus 20 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~----~~~~E~~~l~~~~~hp~iv~~~~~~~~~~-----~ 90 (342)
T 2qr7_A 20 FTDGYEVKEDIGVGSYSVCKRCIHKATNMEFAVKIIDKSKR----DPTEEIEILLRYGQHPNIITLKDVYDDGK-----Y 90 (342)
T ss_dssp HHHHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEETTTC----CCHHHHHHHHHHTTSTTBCCEEEEEECSS-----E
T ss_pred ccccEEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEcccC----ChHHHHHHHHHhcCCCCcCeEEEEEEcCC-----E
Confidence 35679999999999999999999999999999999974432 345788999888 7999999999976554 8
Q ss_pred EeEEEEecCCCChhhhhccCCCccccccCCHHHHHHHHHHHHHHHHHHhhcCCCCceeeCCCCCCeeecCC----CcEEE
Q 040925 608 KAFVFEYMENGSLKDWLHQSDDQVEVCKLSLIQRVNIAIDVASAMEYLHHHCQPPMVHGDLKPSNVLLDHD----MVAHV 683 (833)
Q Consensus 608 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~gL~~LH~~~~~~ivH~Dlkp~NIll~~~----~~~kL 683 (833)
.|+||||+++|+|.+++.... .+++.++..++.||+.||+|||+. ||+||||||+||++.++ +.+||
T Consensus 91 ~~lv~E~~~gg~L~~~i~~~~------~~~~~~~~~~~~qi~~al~~lH~~---givHrDlkp~NIl~~~~~~~~~~~kl 161 (342)
T 2qr7_A 91 VYVVTELMKGGELLDKILRQK------FFSEREASAVLFTITKTVEYLHAQ---GVVHRDLKPSNILYVDESGNPESIRI 161 (342)
T ss_dssp EEEEECCCCSCBHHHHHHTCT------TCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEESSSSCSGGGEEE
T ss_pred EEEEEeCCCCCcHHHHHHHcC------CCCHHHHHHHHHHHHHHHHHHHHC---CcEeccCCHHHEEEecCCCCcCeEEE
Confidence 999999999999999998654 689999999999999999999999 99999999999998543 35999
Q ss_pred cccccccccCcccccccccCCCccccccccccccCccccCCCCCCcccccccCCcCCCccccCCccHHHHHHHhCCCccc
Q 040925 684 CDFGLAKFLSDHQLDTAVKTPSSSIGLKGTVGYVAPEYGMGSEASMTGDIFTGRRPIDAVFNEGHSLHEFAKTALPEKVM 763 (833)
Q Consensus 684 ~DfG~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~s~~~~~~~~~~~g~~l~~~~~~~~p~~~~ 763 (833)
+|||+++....... .....+||+.|+|||++.+..++.++|||| .|+++|+++++..|+...
T Consensus 162 ~Dfg~a~~~~~~~~--------~~~~~~gt~~y~aPE~~~~~~~~~~~Diws----------lG~il~ell~g~~Pf~~~ 223 (342)
T 2qr7_A 162 CDFGFAKQLRAENG--------LLMTPCYTANFVAPEVLERQGYDAACDIWS----------LGVLLYTMLTGYTPFANG 223 (342)
T ss_dssp CCCTTCEECBCTTC--------CBCCSSCCSSCCCHHHHHHHHHHHHHHHHH----------HHHHHHHHHHSSCSSCSS
T ss_pred EECCCcccCcCCCC--------ceeccCCCccccCHHHhcCCCCCCccCeee----------HhHHHHHHhcCCCCCCCC
Confidence 99999986543221 122356999999999998888999999999 888999999999887632
Q ss_pred cccccc-chhhhccccchhhhhhhhchHHHHHHHHHHhhccCCCCCCCCCCHHHHHHH
Q 040925 764 EIVDPS-LLMEVMTNNSMIQEDKRVKTEECLNAIIRTGVLCSMESPFERMDMRDVVAK 820 (833)
Q Consensus 764 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~ 820 (833)
...+.. +........... .......+++.+.+++.+||..||++|||+.|+++.
T Consensus 224 ~~~~~~~~~~~i~~~~~~~---~~~~~~~~s~~~~~li~~~L~~dP~~R~t~~~il~h 278 (342)
T 2qr7_A 224 PDDTPEEILARIGSGKFSL---SGGYWNSVSDTAKDLVSKMLHVDPHQRLTAALVLRH 278 (342)
T ss_dssp TTSCHHHHHHHHHHCCCCC---CSTTTTTSCHHHHHHHHHHTCSSTTTSCCHHHHTTS
T ss_pred CcCCHHHHHHHHccCCccc---CccccccCCHHHHHHHHHHCCCChhHCcCHHHHhcC
Confidence 211111 111111111100 001112345678899999999999999999999875
No 177
>1ob3_A PFPK5, cell division control protein 2 homolog; transferase, serine/threonine-protein kinase, ATP-binding, phosphorylation, CDK; 1.9A {Plasmodium falciparum} SCOP: d.144.1.7 PDB: 1v0p_A* 1v0o_A* 1v0b_A
Probab=100.00 E-value=5.3e-38 Score=330.17 Aligned_cols=257 Identities=22% Similarity=0.298 Sum_probs=194.3
Q ss_pred cCCccCceeccCcceEEEEEEECCCceEEEEEEeeccCC--cchhHHHHHHHHHhhcCCCccceEeeEeecCCCCCCceE
Q 040925 531 GEFSSSNMIGQGSFGYVYKGTLGEDEMIVAVKVINLKYK--GASRSFVAECEALRNIRHRNLIKIITICSSTDFKGTDFK 608 (833)
Q Consensus 531 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~--~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~ 608 (833)
++|++.+.||+|+||.||+|++ .+++.||+|+++.... ...+.+.+|++++++++||||+++++++...+ ..
T Consensus 2 ~~y~~~~~lg~G~~g~V~~~~~-~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~-----~~ 75 (288)
T 1ob3_A 2 EKYHGLEKIGEGTYGVVYKAQN-NYGETFALKKIRLEKEDEGIPSTTIREISILKELKHSNIVKLYDVIHTKK-----RL 75 (288)
T ss_dssp CSEEEEEEEEEETTEEEEEEEE-TTSCEEEEEEECCSSGGGCCCHHHHHHHHGGGGCCCTTBCCEEEEEECSS-----CE
T ss_pred ccchhhhhcccCCCEEEEEEEc-CCCCEEEEEEEeccccccccchhHHHHHHHHHhcCCCCEeeeeeEEccCC-----eE
Confidence 5799999999999999999999 4789999999965432 23467889999999999999999999976554 89
Q ss_pred eEEEEecCCCChhhhhccCCCccccccCCHHHHHHHHHHHHHHHHHHhhcCCCCceeeCCCCCCeeecCCCcEEEccccc
Q 040925 609 AFVFEYMENGSLKDWLHQSDDQVEVCKLSLIQRVNIAIDVASAMEYLHHHCQPPMVHGDLKPSNVLLDHDMVAHVCDFGL 688 (833)
Q Consensus 609 ~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~gL~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kL~DfG~ 688 (833)
++||||+++ +|.+++..... .+++..++.++.|++.||+|||+. ||+||||||+||+++.++.+||+|||+
T Consensus 76 ~lv~e~~~~-~l~~~~~~~~~-----~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~kl~Dfg~ 146 (288)
T 1ob3_A 76 VLVFEHLDQ-DLKKLLDVCEG-----GLESVTAKSFLLQLLNGIAYCHDR---RVLHRDLKPQNLLINREGELKIADFGL 146 (288)
T ss_dssp EEEEECCSE-EHHHHHHTSTT-----CCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTSCEEECCTTH
T ss_pred EEEEEecCC-CHHHHHHhccc-----CCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHEEEcCCCCEEEeECcc
Confidence 999999985 99999876532 689999999999999999999999 999999999999999999999999999
Q ss_pred ccccCcccccccccCCCccccccccccccCccccCCC-CCCcccccccCCcCCCccccCCccHHHHHHHhCCCccccccc
Q 040925 689 AKFLSDHQLDTAVKTPSSSIGLKGTVGYVAPEYGMGS-EASMTGDIFTGRRPIDAVFNEGHSLHEFAKTALPEKVMEIVD 767 (833)
Q Consensus 689 a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~Di~s~~~~~~~~~~~g~~l~~~~~~~~p~~~~~~~~ 767 (833)
++....... ......||+.|+|||++.+. .++.++|||| .|+++++++++..|+......+
T Consensus 147 ~~~~~~~~~--------~~~~~~~t~~y~aPE~~~~~~~~~~~~Diws----------lG~il~~l~~g~~pf~~~~~~~ 208 (288)
T 1ob3_A 147 ARAFGIPVR--------KYTHEIVTLWYRAPDVLMGSKKYSTTIDIWS----------VGCIFAEMVNGTPLFPGVSEAD 208 (288)
T ss_dssp HHHHCC-----------------CCCTTCCHHHHTTCCSCCTHHHHHH----------HHHHHHHHHHSSCSCCCSSHHH
T ss_pred ccccCcccc--------ccccccccccccCchheeCCCCCCcHHHHHH----------HHHHHHHHHhCCCCCCCCCHHH
Confidence 986543211 11234689999999998764 5899999999 7888888888887764221100
Q ss_pred ccch-hh------------hc---ccc--c--hhhhhhhhchHHHHHHHHHHhhccCCCCCCCCCCHHHHHHH
Q 040925 768 PSLL-ME------------VM---TNN--S--MIQEDKRVKTEECLNAIIRTGVLCSMESPFERMDMRDVVAK 820 (833)
Q Consensus 768 ~~~~-~~------------~~---~~~--~--~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~ 820 (833)
.... .. .. ... . .............++.+.+++.+||+.||++|||++|+++.
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~h 281 (288)
T 1ob3_A 209 QLMRIFRILGTPNSKNWPNVTELPKYDPNFTVYEPLPWESFLKGLDESGIDLLSKMLKLDPNQRITAKQALEH 281 (288)
T ss_dssp HHHHHHHHHCCCCTTTSTTGGGSTTCCTTCCCCCCCCGGGTCCSCCHHHHHHHHHHTCSSTTTSCCHHHHHTS
T ss_pred HHHHHHHHHCCCChhhchhhhcccccccccccccCccHHHHhhhcCHHHHHHHHHHcCCCcccCCCHHHHhcC
Confidence 0000 00 00 000 0 00000001112345678899999999999999999999763
No 178
>2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A*
Probab=100.00 E-value=4.4e-38 Score=354.84 Aligned_cols=254 Identities=22% Similarity=0.301 Sum_probs=205.9
Q ss_pred hcCCccCceeccCcceEEEEEEECCCceEEEEEEeecc---CCcchhHHHHHHHHHhhcCCCccceEeeEeecCCCCCCc
Q 040925 530 TGEFSSSNMIGQGSFGYVYKGTLGEDEMIVAVKVINLK---YKGASRSFVAECEALRNIRHRNLIKIITICSSTDFKGTD 606 (833)
Q Consensus 530 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~---~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~ 606 (833)
.++|++.+.||+|+||.||+|++..+|+.||+|+++.. .......+.+|++++++++||||+++++++.+.+
T Consensus 183 ~~~f~~~~~LG~G~fG~Vy~a~~~~tg~~vAvK~l~k~~~~~~~~~~~~~~E~~iL~~l~hp~Iv~l~~~~~~~~----- 257 (576)
T 2acx_A 183 KNTFRQYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKQILEKVNSRFVVSLAYAYETKD----- 257 (576)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCCCTTBCCEEEEEECSS-----
T ss_pred ccceEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEhHhhhhhHHHHHHHHHHHHHHHcCCCCEeeEEEEEeeCC-----
Confidence 46799999999999999999999999999999999643 2234466889999999999999999999976554
Q ss_pred eEeEEEEecCCCChhhhhccCCCccccccCCHHHHHHHHHHHHHHHHHHhhcCCCCceeeCCCCCCeeecCCCcEEEccc
Q 040925 607 FKAFVFEYMENGSLKDWLHQSDDQVEVCKLSLIQRVNIAIDVASAMEYLHHHCQPPMVHGDLKPSNVLLDHDMVAHVCDF 686 (833)
Q Consensus 607 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~gL~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kL~Df 686 (833)
..|+||||++||+|.+++...... .+++..++.++.||+.||+|||+. +|+||||||+||+++.++.+||+||
T Consensus 258 ~l~lVmEy~~gg~L~~~l~~~~~~----~l~e~~~~~i~~qIl~aL~yLH~~---gIvHrDLKPeNILld~~g~vKL~DF 330 (576)
T 2acx_A 258 ALCLVLTLMNGGDLKFHIYHMGQA----GFPEARAVFYAAEICCGLEDLHRE---RIVYRDLKPENILLDDHGHIRISDL 330 (576)
T ss_dssp EEEEEECCCCSCBHHHHHHSSSSC----CCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTSCEEECCC
T ss_pred EEEEEEEcCCCCcHHHHHHhcCCC----CCCHHHHHHHHHHHHHHHHHHHHC---CEeccCCchheEEEeCCCCeEEEec
Confidence 899999999999999999875422 589999999999999999999999 9999999999999999999999999
Q ss_pred ccccccCcccccccccCCCccccccccccccCccccCCCCCCcccccccCCcCCCccccCCccHHHHHHHhCCCccccc-
Q 040925 687 GLAKFLSDHQLDTAVKTPSSSIGLKGTVGYVAPEYGMGSEASMTGDIFTGRRPIDAVFNEGHSLHEFAKTALPEKVMEI- 765 (833)
Q Consensus 687 G~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~s~~~~~~~~~~~g~~l~~~~~~~~p~~~~~~- 765 (833)
|+|+....... ....+||+.|+|||++.+..++.++|||| .|+++|+++++..|+.....
T Consensus 331 Gla~~~~~~~~---------~~~~~GT~~Y~APEvl~~~~~~~~~DiwS----------LGvilyeLltG~~PF~~~~~~ 391 (576)
T 2acx_A 331 GLAVHVPEGQT---------IKGRVGTVGYMAPEVVKNERYTFSPDWWA----------LGCLLYEMIAGQSPFQQRKKK 391 (576)
T ss_dssp TTCEECCTTCC---------EECCCSCGGGCCHHHHTTCEESSHHHHHH----------HHHHHHHHHHSSCSSSCSSSC
T ss_pred ccceecccCcc---------ccccCCCccccCHHHHcCCCCCccchHHH----------HHHHHHHHHhCCCCCcccccc
Confidence 99987643221 12347999999999999999999999999 88999999999999863221
Q ss_pred ccccchhhhccccchhhhhhhhchHHHHHHHHHHhhccCCCCCCCCC-----CHHHHHHH
Q 040925 766 VDPSLLMEVMTNNSMIQEDKRVKTEECLNAIIRTGVLCSMESPFERM-----DMRDVVAK 820 (833)
Q Consensus 766 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RP-----t~~eil~~ 820 (833)
.........+.. .....+..++..+.+++.+||..||++|| +++|++++
T Consensus 392 ~~~~~i~~~i~~------~~~~~p~~~s~~~~dLI~~lL~~dP~~R~g~~~~sa~eil~H 445 (576)
T 2acx_A 392 IKREEVERLVKE------VPEEYSERFSPQARSLCSQLLCKDPAERLGCRGGSAREVKEH 445 (576)
T ss_dssp CCHHHHHHHHHH------CCCCCCTTSCHHHHHHHHHHTCSSGGGSTTCSSSHHHHHHTS
T ss_pred hhHHHHHHHhhc------ccccCCccCCHHHHHHHHHhccCCHHHcCCCCCCCHHHHHhC
Confidence 111111111100 00111233466789999999999999999 78888764
No 179
>3n9x_A Phosphotransferase; malaria kinase, structural genomics, structural genomics CON SGC; 2.05A {Plasmodium berghei} PDB: 3nie_A*
Probab=100.00 E-value=7.3e-38 Score=347.95 Aligned_cols=210 Identities=24% Similarity=0.369 Sum_probs=168.7
Q ss_pred hcCCccCceeccCcceEEEEEEECCCceEEEEEEeeccCC--cchhHHHHHHHHHhhcCCCccceEeeEeecCCCCCCce
Q 040925 530 TGEFSSSNMIGQGSFGYVYKGTLGEDEMIVAVKVINLKYK--GASRSFVAECEALRNIRHRNLIKIITICSSTDFKGTDF 607 (833)
Q Consensus 530 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~--~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~ 607 (833)
.++|++.+.||+|+||.||+|++..+++.||||+++.... ...+.+.+|++++++++||||+++++++....+.....
T Consensus 25 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~ 104 (432)
T 3n9x_A 25 PDNYIIKHLIGRGSYGYVYLAYDKNTEKNVAIKKVNRMFEDLIDCKRILREITILNRLKSDYIIRLYDLIIPDDLLKFDE 104 (432)
T ss_dssp CTTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEECSTTTSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCTTTCCC
T ss_pred cCCEEEEEEEeecCCEEEEEEEECCCCcEEEEEEeCchhcChHHHHHHHHHHHHHHHcCCCCcceEEEEEecCCCCcCCe
Confidence 3589999999999999999999999999999999975422 23467899999999999999999999987665444467
Q ss_pred EeEEEEecCCCChhhhhccCCCccccccCCHHHHHHHHHHHHHHHHHHhhcCCCCceeeCCCCCCeeecCCCcEEEcccc
Q 040925 608 KAFVFEYMENGSLKDWLHQSDDQVEVCKLSLIQRVNIAIDVASAMEYLHHHCQPPMVHGDLKPSNVLLDHDMVAHVCDFG 687 (833)
Q Consensus 608 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~gL~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kL~DfG 687 (833)
.|+||||++ |+|.+++.... .+++..++.++.||+.||+|||+. +|+||||||+||+++.++.+||+|||
T Consensus 105 ~~lv~e~~~-~~L~~~~~~~~------~l~~~~~~~i~~qil~aL~~LH~~---givHrDlkp~NILl~~~~~~kL~DFG 174 (432)
T 3n9x_A 105 LYIVLEIAD-SDLKKLFKTPI------FLTEEHIKTILYNLLLGENFIHES---GIIHRDLKPANCLLNQDCSVKVCDFG 174 (432)
T ss_dssp EEEEEECCS-EEHHHHHHSSC------CCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTCCEEECCCT
T ss_pred EEEEEecCC-cCHHHHHhccC------CCCHHHHHHHHHHHHHHHHHHHHC---CCCCCCCCHHHeEECCCCCEEEccCC
Confidence 999999996 59999998654 689999999999999999999999 99999999999999999999999999
Q ss_pred cccccCcccccccc--------------cCCCccccccccccccCcccc-CCCCCCcccccccCCcCCCccccCCccHHH
Q 040925 688 LAKFLSDHQLDTAV--------------KTPSSSIGLKGTVGYVAPEYG-MGSEASMTGDIFTGRRPIDAVFNEGHSLHE 752 (833)
Q Consensus 688 ~a~~~~~~~~~~~~--------------~~~~~~~~~~gt~~y~aPE~~-~~~~~~~~~Di~s~~~~~~~~~~~g~~l~~ 752 (833)
+|+........... .........+||+.|+|||++ .+..++.++|||| .|+++++
T Consensus 175 la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE~~~~~~~~~~~~DiwS----------lG~il~e 244 (432)
T 3n9x_A 175 LARTINSEKDTNIVNDLEENEEPGPHNKNLKKQLTSHVVTRWYRAPELILLQENYTKSIDIWS----------TGCIFAE 244 (432)
T ss_dssp TCEEC-------------------------------CCCCCTTCCHHHHTTCSCCCTHHHHHH----------HHHHHHH
T ss_pred CcccccccccccccccccccccccccccchhccccCCCCCccccCHHHHhcCCCCCcccccch----------HHHHHHH
Confidence 99876543211000 000123456899999999985 5667999999999 6667777
Q ss_pred HHHHhCC
Q 040925 753 FAKTALP 759 (833)
Q Consensus 753 ~~~~~~p 759 (833)
++++..|
T Consensus 245 ll~g~~p 251 (432)
T 3n9x_A 245 LLNMLQS 251 (432)
T ss_dssp HHTTCTT
T ss_pred HHhcccc
Confidence 7764433
No 180
>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A
Probab=100.00 E-value=1.9e-37 Score=342.96 Aligned_cols=255 Identities=23% Similarity=0.263 Sum_probs=194.3
Q ss_pred HHhcCCccCceeccCcceEEEEEEECCCceEEEEEEeeccC--------CcchhHHHHHHHHHhhcCCCccceEeeEeec
Q 040925 528 KATGEFSSSNMIGQGSFGYVYKGTLGEDEMIVAVKVINLKY--------KGASRSFVAECEALRNIRHRNLIKIITICSS 599 (833)
Q Consensus 528 ~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~--------~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~ 599 (833)
...++|.+.+.||+|+||.||+|.+..+++.||||++.... ......+.+|++++++++||||+++++++..
T Consensus 132 ~~~~~y~~~~~LG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~l~~~~~~ 211 (419)
T 3i6u_A 132 ALRDEYIMSKTLGSGACGEVKLAFERKTCKKVAIRIISKRKFAIGSAREADPALNVETEIEILKKLNHPCIIKIKNFFDA 211 (419)
T ss_dssp HHHTTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEGGGGTTC--------CCHHHHHHHHHHCCCTTBCCCCEEEES
T ss_pred hhhccEEEEeEEeeCCCeEEEEEEECCCCcEEEEEEEEechhcccccccchhHHHHHHHHHHHHhCCCCCEeeEEEEEec
Confidence 34678999999999999999999999999999999996432 1122458899999999999999999998643
Q ss_pred CCCCCCceEeEEEEecCCCChhhhhccCCCccccccCCHHHHHHHHHHHHHHHHHHhhcCCCCceeeCCCCCCeeecCC-
Q 040925 600 TDFKGTDFKAFVFEYMENGSLKDWLHQSDDQVEVCKLSLIQRVNIAIDVASAMEYLHHHCQPPMVHGDLKPSNVLLDHD- 678 (833)
Q Consensus 600 ~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~gL~~LH~~~~~~ivH~Dlkp~NIll~~~- 678 (833)
. ..++||||+++|+|.+++.... .+++.+++.++.|++.||+|||+. +|+||||||+||+++.+
T Consensus 212 ~------~~~lv~e~~~~g~L~~~l~~~~------~~~~~~~~~i~~qi~~~l~~LH~~---~ivHrDlkp~NIll~~~~ 276 (419)
T 3i6u_A 212 E------DYYIVLELMEGGELFDKVVGNK------RLKEATCKLYFYQMLLAVQYLHEN---GIIHRDLKPENVLLSSQE 276 (419)
T ss_dssp S------EEEEEEECCTTCBGGGGTSSSC------CCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEESSSS
T ss_pred C------ceEEEEEcCCCCcHHHHHhccC------CCCHHHHHHHHHHHHHHHHHHHHC---CccccCCChHhEEEecCC
Confidence 2 5789999999999999988654 689999999999999999999999 99999999999999754
Q ss_pred --CcEEEcccccccccCcccccccccCCCccccccccccccCccccCC---CCCCcccccccCCcCCCccccCCccHHHH
Q 040925 679 --MVAHVCDFGLAKFLSDHQLDTAVKTPSSSIGLKGTVGYVAPEYGMG---SEASMTGDIFTGRRPIDAVFNEGHSLHEF 753 (833)
Q Consensus 679 --~~~kL~DfG~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~---~~~~~~~Di~s~~~~~~~~~~~g~~l~~~ 753 (833)
+.+||+|||+|+....... .....||+.|+|||++.+ ..++.++|||| .|++++++
T Consensus 277 ~~~~~kl~DFG~a~~~~~~~~---------~~~~~gt~~y~aPE~~~~~~~~~~~~~~Diws----------lG~il~~l 337 (419)
T 3i6u_A 277 EDCLIKITDFGHSKILGETSL---------MRTLCGTPTYLAPEVLVSVGTAGYNRAVDCWS----------LGVILFIC 337 (419)
T ss_dssp SSCCEEECCSSTTTSCC--------------------CTTCCTTTTC----CTTHHHHHHHH----------HHHHHHHH
T ss_pred CcceEEEeecccceecCCCcc---------ccccCCCCCccCceeeecCCCCCCCchhhhHh----------HHHHHHHH
Confidence 4599999999987654321 123569999999999753 56889999999 88899999
Q ss_pred HHHhCCCcccccccccchhhhccccchhhhhhhhchHHHHHHHHHHhhccCCCCCCCCCCHHHHHHH
Q 040925 754 AKTALPEKVMEIVDPSLLMEVMTNNSMIQEDKRVKTEECLNAIIRTGVLCSMESPFERMDMRDVVAK 820 (833)
Q Consensus 754 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~ 820 (833)
+++..|+...... ............... ......+++.+.+++.+||+.||++|||++|+++.
T Consensus 338 ltg~~pf~~~~~~-~~~~~~i~~~~~~~~---~~~~~~~~~~~~~li~~~L~~dP~~Rps~~e~l~h 400 (419)
T 3i6u_A 338 LSGYPPFSEHRTQ-VSLKDQITSGKYNFI---PEVWAEVSEKALDLVKKLLVVDPKARFTTEEALRH 400 (419)
T ss_dssp HHSSCSSCCCSSS-CCHHHHHHTTCCCCC---HHHHTTSCHHHHHHHHHHSCSSTTTSCCHHHHHHS
T ss_pred HHCCCCCCCCcch-HHHHHHHhcCCCCCC---chhhcccCHHHHHHHHHHccCChhHCcCHHHHhCC
Confidence 9999987532111 111111111111000 11112346678999999999999999999999874
No 181
>2jam_A Calcium/calmodulin-dependent protein kinase type 1G; transferase, kinase, membrane, ATP-binding, prenylation, serine/threonine-protein kinase, alternative splicing; HET: J60; 1.7A {Homo sapiens} PDB: 2jc6_A* 1a06_A
Probab=100.00 E-value=8e-38 Score=331.67 Aligned_cols=252 Identities=22% Similarity=0.244 Sum_probs=201.1
Q ss_pred hcCCccCceeccCcceEEEEEEECCCceEEEEEEeeccCCcchhHHHHHHHHHhhcCCCccceEeeEeecCCCCCCceEe
Q 040925 530 TGEFSSSNMIGQGSFGYVYKGTLGEDEMIVAVKVINLKYKGASRSFVAECEALRNIRHRNLIKIITICSSTDFKGTDFKA 609 (833)
Q Consensus 530 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~~ 609 (833)
.++|.+.+.||+|+||.||+|++..+++.||+|+++.......+.+.+|++++++++||||+++++++.... ..+
T Consensus 8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~-----~~~ 82 (304)
T 2jam_A 8 RKTFIFMEVLGSGAFSEVFLVKQRLTGKLFALKCIKKSPAFRDSSLENEIAVLKKIKHENIVTLEDIYESTT-----HYY 82 (304)
T ss_dssp HHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEECC------HHHHHHHHHHHCCCTTBCCEEEEEECSS-----EEE
T ss_pred hccceeeeeccCCCCceEEEEEECCCCCEEEEEEEecccccchHHHHHHHHHHHhCCCCCeeehhhhcccCC-----EEE
Confidence 457999999999999999999999899999999998654445567899999999999999999999976554 899
Q ss_pred EEEEecCCCChhhhhccCCCccccccCCHHHHHHHHHHHHHHHHHHhhcCCCCceeeCCCCCCeee---cCCCcEEEccc
Q 040925 610 FVFEYMENGSLKDWLHQSDDQVEVCKLSLIQRVNIAIDVASAMEYLHHHCQPPMVHGDLKPSNVLL---DHDMVAHVCDF 686 (833)
Q Consensus 610 lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~gL~~LH~~~~~~ivH~Dlkp~NIll---~~~~~~kL~Df 686 (833)
+||||+++|+|.+++.... .+++..++.++.|++.||.|||+. +|+||||||+||++ +.++.+||+||
T Consensus 83 lv~e~~~~~~L~~~l~~~~------~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dikp~NIl~~~~~~~~~~kl~Df 153 (304)
T 2jam_A 83 LVMQLVSGGELFDRILERG------VYTEKDASLVIQQVLSAVKYLHEN---GIVHRDLKPENLLYLTPEENSKIMITDF 153 (304)
T ss_dssp EEECCCCSCBHHHHHHHHS------CCCHHHHHHHHHHHHHHHHHHHHT---TCCCCSCCGGGCEESSSSTTCCEEBCSC
T ss_pred EEEEcCCCccHHHHHHHcC------CCCHHHHHHHHHHHHHHHHHHHHC---CccccCCCHHHEEEecCCCCCCEEEccC
Confidence 9999999999999987654 689999999999999999999999 99999999999999 78889999999
Q ss_pred ccccccCcccccccccCCCccccccccccccCccccCCCCCCcccccccCCcCCCccccCCccHHHHHHHhCCCcccccc
Q 040925 687 GLAKFLSDHQLDTAVKTPSSSIGLKGTVGYVAPEYGMGSEASMTGDIFTGRRPIDAVFNEGHSLHEFAKTALPEKVMEIV 766 (833)
Q Consensus 687 G~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~s~~~~~~~~~~~g~~l~~~~~~~~p~~~~~~~ 766 (833)
|+++...... .....||+.|+|||++.+..++.++|||| .|+++++++++..|+.....
T Consensus 154 g~~~~~~~~~----------~~~~~~~~~y~aPE~~~~~~~~~~~Di~s----------lG~il~~l~~g~~pf~~~~~- 212 (304)
T 2jam_A 154 GLSKMEQNGI----------MSTACGTPGYVAPEVLAQKPYSKAVDCWS----------IGVITYILLCGYPPFYEETE- 212 (304)
T ss_dssp STTCCCCCBT----------THHHHSCCCBCCTTTBSSCSCCHHHHHHH----------HHHHHHHHHHSSCTTTTSCH-
T ss_pred CcceecCCCc----------cccccCCCCccChHHhccCCCCchhhHHH----------HHHHHHHHHHCCCCCCCCCH-
Confidence 9997543321 12245999999999999999999999999 78889999999888752211
Q ss_pred cccchhhhccccchhhhhhhhchHHHHHHHHHHhhccCCCCCCCCCCHHHHHHH
Q 040925 767 DPSLLMEVMTNNSMIQEDKRVKTEECLNAIIRTGVLCSMESPFERMDMRDVVAK 820 (833)
Q Consensus 767 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~ 820 (833)
.............. .......+++.+.+++.+||..||++|||++|+++.
T Consensus 213 -~~~~~~i~~~~~~~---~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~~~l~h 262 (304)
T 2jam_A 213 -SKLFEKIKEGYYEF---ESPFWDDISESAKDFICHLLEKDPNERYTCEKALSH 262 (304)
T ss_dssp -HHHHHHHHHCCCCC---CTTTTTTSCHHHHHHHHHHHCSSTTTSCCHHHHHTS
T ss_pred -HHHHHHHHcCCCCC---CccccccCCHHHHHHHHHHcCCChhHCcCHHHHhcC
Confidence 11111111110000 011122345678999999999999999999999874
No 182
>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens}
Probab=100.00 E-value=5.6e-38 Score=335.12 Aligned_cols=279 Identities=18% Similarity=0.196 Sum_probs=210.8
Q ss_pred hcCCccCceeccCcceEEEEEEECCCceEEEEEEeeccCCcchhHHHHHHHHHhhcCCCccceEeeEeecCCCCCCceEe
Q 040925 530 TGEFSSSNMIGQGSFGYVYKGTLGEDEMIVAVKVINLKYKGASRSFVAECEALRNIRHRNLIKIITICSSTDFKGTDFKA 609 (833)
Q Consensus 530 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~~ 609 (833)
.++|++.+.||+|+||.||+|++..+++.||||++........+.+.+|++++++++||||+++++++.... ......+
T Consensus 28 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~-~~~~~~~ 106 (317)
T 2buj_A 28 NKHYLFIQKLGEGGFSYVDLVEGLHDGHFYALKRILCHEQQDREEAQREADMHRLFNHPNILRLVAYCLRER-GAKHEAW 106 (317)
T ss_dssp TEEEEEEEEEEC--CEEEEEEEETTTCCEEEEEEEEESSHHHHHHHHHHHHHHHTCCCTTBCCCCEEEEEEE-TTEEEEE
T ss_pred CeEEEEEEEecCCCCeEEEEEEecCCCcEEEEEEEecCCHHHHHHHHHHHHHHhhcCCCCeeeEEEEEEecc-CCCceeE
Confidence 468999999999999999999998899999999997655556678999999999999999999999986321 2234789
Q ss_pred EEEEecCCCChhhhhccCCCccccccCCHHHHHHHHHHHHHHHHHHhhcCCCCceeeCCCCCCeeecCCCcEEEcccccc
Q 040925 610 FVFEYMENGSLKDWLHQSDDQVEVCKLSLIQRVNIAIDVASAMEYLHHHCQPPMVHGDLKPSNVLLDHDMVAHVCDFGLA 689 (833)
Q Consensus 610 lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~gL~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kL~DfG~a 689 (833)
+||||+++|+|.+++...... ...+++.+++.++.|++.||+|||+. +|+||||||+||+++.++.+||+|||++
T Consensus 107 lv~e~~~~~~L~~~l~~~~~~--~~~~~~~~~~~i~~qi~~~L~~LH~~---~ivH~dlkp~NIl~~~~~~~kl~dfg~~ 181 (317)
T 2buj_A 107 LLLPFFKRGTLWNEIERLKDK--GNFLTEDQILWLLLGICRGLEAIHAK---GYAHRDLKPTNILLGDEGQPVLMDLGSM 181 (317)
T ss_dssp EEEECCTTCBHHHHHHHHHTT--TCCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTSCEEECCCSSC
T ss_pred EEEEeCCCCcHHHHHHHHHhc--CCCCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCCHHHEEEcCCCCEEEEecCcc
Confidence 999999999999999763211 12689999999999999999999999 9999999999999999999999999998
Q ss_pred cccCcccccccc-cCCCccccccccccccCccccCCCC---CCcccccccCCcCCCccccCCccHHHHHHHhCCCccccc
Q 040925 690 KFLSDHQLDTAV-KTPSSSIGLKGTVGYVAPEYGMGSE---ASMTGDIFTGRRPIDAVFNEGHSLHEFAKTALPEKVMEI 765 (833)
Q Consensus 690 ~~~~~~~~~~~~-~~~~~~~~~~gt~~y~aPE~~~~~~---~~~~~Di~s~~~~~~~~~~~g~~l~~~~~~~~p~~~~~~ 765 (833)
............ ..........||+.|+|||++.+.. ++.++|||| +|+++++++++..|+.....
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~s----------lG~il~el~~g~~p~~~~~~ 251 (317)
T 2buj_A 182 NQACIHVEGSRQALTLQDWAAQRCTISYRAPELFSVQSHCVIDERTDVWS----------LGCVLYAMMFGEGPYDMVFQ 251 (317)
T ss_dssp EESCEEEESHHHHHHHHHHHHHHSCGGGCCGGGSSCCSEEEECTHHHHHH----------HHHHHHHHHHSSCTTHHHHH
T ss_pred hhcccccccccccccccccccccCCcccCCHhHhccCCCcCCCchhhHHH----------HHHHHHHHHhCCCChhhhhc
Confidence 765432110000 0000011245799999999987654 688999999 78889999999888752211
Q ss_pred ccccchhhhccccchhhhhhhhchHHHHHHHHHHhhccCCCCCCCCCCHHHHHHHHHHhhhhhhc
Q 040925 766 VDPSLLMEVMTNNSMIQEDKRVKTEECLNAIIRTGVLCSMESPFERMDMRDVVAKLCHTRETFLG 830 (833)
Q Consensus 766 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~i~~~~~~ 830 (833)
......... .... .......++..+.+++.+||+.||++|||++|+++.|+.+.....+
T Consensus 252 ~~~~~~~~~-~~~~-----~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~L~~~~~~~~~ 310 (317)
T 2buj_A 252 KGDSVALAV-QNQL-----SIPQSPRHSSALWQLLNSMMTVDPHQRPHIPLLLSQLEALQPPAPG 310 (317)
T ss_dssp TTSCHHHHH-HCC-------CCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHTCCCCCC
T ss_pred ccchhhHHh-hccC-----CCCccccCCHHHHHHHHHHhhcChhhCCCHHHHHHHhhhcCCCCCC
Confidence 111111111 1110 0111123456789999999999999999999999999998765443
No 183
>2yex_A Serine/threonine-protein kinase CHK1; transferase, cell cycle; HET: YEX; 1.30A {Homo sapiens} PDB: 2x8e_A* 2ydk_A* 2ydj_A* 2yer_A* 2ydi_A* 1nvq_A* 1nvr_A* 1nvs_A* 2wmq_A* 2wmr_A* 2wms_A* 2wmt_A* 2wmu_A* 2wmv_A* 2wmw_A* 2wmx_A* 2x8d_A* 2x8i_A* 2xey_A* 2xez_A* ...
Probab=100.00 E-value=1.8e-37 Score=324.25 Aligned_cols=256 Identities=21% Similarity=0.255 Sum_probs=204.9
Q ss_pred HhcCCccCceeccCcceEEEEEEECCCceEEEEEEeeccC-CcchhHHHHHHHHHhhcCCCccceEeeEeecCCCCCCce
Q 040925 529 ATGEFSSSNMIGQGSFGYVYKGTLGEDEMIVAVKVINLKY-KGASRSFVAECEALRNIRHRNLIKIITICSSTDFKGTDF 607 (833)
Q Consensus 529 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~ 607 (833)
..++|++.+.||+|+||.||+|++..+++.||||+++... ....+.+.+|+.+++.++||||+++++++.... .
T Consensus 5 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~-----~ 79 (276)
T 2yex_A 5 FVEDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHENVVKFYGHRREGN-----I 79 (276)
T ss_dssp HHHHEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEGGGCTTHHHHHHHHHHHHHTCCCTTBCCEEEEEEETT-----E
T ss_pred eecceEEEEEeecCCCcEEEEEEECCCCcEEEEEEeeeccchhhhHHHHHHHHHHHhcCCCCceeeeeEEEcCC-----E
Confidence 3568999999999999999999999899999999997443 234577899999999999999999999976654 8
Q ss_pred EeEEEEecCCCChhhhhccCCCccccccCCHHHHHHHHHHHHHHHHHHhhcCCCCceeeCCCCCCeeecCCCcEEEcccc
Q 040925 608 KAFVFEYMENGSLKDWLHQSDDQVEVCKLSLIQRVNIAIDVASAMEYLHHHCQPPMVHGDLKPSNVLLDHDMVAHVCDFG 687 (833)
Q Consensus 608 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~gL~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kL~DfG 687 (833)
.++||||+++|+|.+++.... .+++..++.++.|++.||+|||+. +|+||||||+||+++.++.+||+|||
T Consensus 80 ~~lv~e~~~~~~L~~~l~~~~------~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~kl~dfg 150 (276)
T 2yex_A 80 QYLFLEYCSGGELFDRIEPDI------GMPEPDAQRFFHQLMAGVVYLHGI---GITHRDIKPENLLLDERDNLKISDFG 150 (276)
T ss_dssp EEEEEECCTTEEGGGGSBTTT------BCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTCCEEECCCT
T ss_pred EEEEEEecCCCcHHHHHhhcc------CCCHHHHHHHHHHHHHHHHHHHhC---CeeccCCChHHEEEccCCCEEEeeCC
Confidence 899999999999999997654 689999999999999999999999 99999999999999999999999999
Q ss_pred cccccCcccccccccCCCccccccccccccCccccCCCCC-CcccccccCCcCCCccccCCccHHHHHHHhCCCcccccc
Q 040925 688 LAKFLSDHQLDTAVKTPSSSIGLKGTVGYVAPEYGMGSEA-SMTGDIFTGRRPIDAVFNEGHSLHEFAKTALPEKVMEIV 766 (833)
Q Consensus 688 ~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~-~~~~Di~s~~~~~~~~~~~g~~l~~~~~~~~p~~~~~~~ 766 (833)
.+.......... ......||+.|+|||++.+..+ +.++|||| .|+++++++++..|+......
T Consensus 151 ~~~~~~~~~~~~------~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~s----------lG~il~~l~~g~~p~~~~~~~ 214 (276)
T 2yex_A 151 LATVFRYNNRER------LLNKMCGTLPYVAPELLKRREFHAEPVDVWS----------CGIVLTAMLAGELPWDQPSDS 214 (276)
T ss_dssp TCEECEETTEEC------CBCCCCSCGGGCCGGGGTCSSBCHHHHHHHH----------HHHHHHHHHHSSCCCSCSCTT
T ss_pred CccccCCCcchh------cccCCccccCccChHHHhcCCCCCCcchHHH----------HHHHHHHHHhCCCCCCCCchH
Confidence 998654322111 1123569999999999887765 78899999 888999999999887633211
Q ss_pred cccchhhhccccchhhhhhhhchHHHHHHHHHHhhccCCCCCCCCCCHHHHHHH
Q 040925 767 DPSLLMEVMTNNSMIQEDKRVKTEECLNAIIRTGVLCSMESPFERMDMRDVVAK 820 (833)
Q Consensus 767 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~ 820 (833)
.... ........ .......++..+.+++.+||+.||++|||++|+++.
T Consensus 215 ~~~~-~~~~~~~~-----~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~il~~ 262 (276)
T 2yex_A 215 CQEY-SDWKEKKT-----YLNPWKKIDSAPLALLHKILVENPSARITIPDIKKD 262 (276)
T ss_dssp SHHH-HHHHTTCT-----TSTTGGGSCHHHHHHHHHHSCSSTTTSCCHHHHTTC
T ss_pred HHHH-HHhhhccc-----ccCchhhcCHHHHHHHHHHCCCCchhCCCHHHHhcC
Confidence 1111 11111100 001112345678899999999999999999999863
No 184
>2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A* 3ky2_A ...
Probab=100.00 E-value=5.7e-38 Score=337.37 Aligned_cols=268 Identities=21% Similarity=0.342 Sum_probs=206.5
Q ss_pred hcCCccCceeccCcceEEEEEEEC-------CCceEEEEEEeeccCC-cchhHHHHHHHHHhhc-CCCccceEeeEeecC
Q 040925 530 TGEFSSSNMIGQGSFGYVYKGTLG-------EDEMIVAVKVINLKYK-GASRSFVAECEALRNI-RHRNLIKIITICSST 600 (833)
Q Consensus 530 ~~~y~~~~~lg~G~~g~Vy~~~~~-------~~~~~vavK~~~~~~~-~~~~~~~~E~~~l~~l-~h~niv~~~~~~~~~ 600 (833)
.++|++.+.||+|+||.||+|++. .+++.||||+++.... ...+.+.+|+++++++ +||||+++++++...
T Consensus 34 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~ 113 (334)
T 2pvf_A 34 RDKLTLGKPLGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGACTQD 113 (334)
T ss_dssp GGGEEEEEEEEECSSCEEEEEEETTCSTTCC---CEEEEEECCTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSS
T ss_pred HhHeEEeeEEeecCceeEEEeEeccccccccccceEEEEeeeccCCcHHHHHHHHHHHHHHHHhhcCCCEeeEEEEEccC
Confidence 468999999999999999999985 3577899999975432 2346789999999999 899999999997654
Q ss_pred CCCCCceEeEEEEecCCCChhhhhccCCCcc----------ccccCCHHHHHHHHHHHHHHHHHHhhcCCCCceeeCCCC
Q 040925 601 DFKGTDFKAFVFEYMENGSLKDWLHQSDDQV----------EVCKLSLIQRVNIAIDVASAMEYLHHHCQPPMVHGDLKP 670 (833)
Q Consensus 601 ~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~----------~~~~l~~~~~~~i~~qi~~gL~~LH~~~~~~ivH~Dlkp 670 (833)
+ ..++||||+++|+|.+++....... ....+++.+++.++.|++.||+|||+. +|+||||||
T Consensus 114 ~-----~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dlkp 185 (334)
T 2pvf_A 114 G-----PLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLASQ---KCIHRDLAA 185 (334)
T ss_dssp S-----CCEEEEECCTTCBHHHHHHTTSCTTCCSCC--------CCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSG
T ss_pred C-----ceEEEEECCCCCcHHHHHHHhccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHhC---CeeCCCCcc
Confidence 4 7899999999999999998754210 112489999999999999999999999 999999999
Q ss_pred CCeeecCCCcEEEcccccccccCcccccccccCCCccccccccccccCccccCCCCCCcccccccCCcCCCccccCCccH
Q 040925 671 SNVLLDHDMVAHVCDFGLAKFLSDHQLDTAVKTPSSSIGLKGTVGYVAPEYGMGSEASMTGDIFTGRRPIDAVFNEGHSL 750 (833)
Q Consensus 671 ~NIll~~~~~~kL~DfG~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~s~~~~~~~~~~~g~~l 750 (833)
+||+++.++.+||+|||+++......... ......+|+.|+|||++.+..++.++|||| +|+++
T Consensus 186 ~NIll~~~~~~kL~Dfg~~~~~~~~~~~~------~~~~~~~~~~y~aPE~~~~~~~~~~~Di~s----------lG~il 249 (334)
T 2pvf_A 186 RNVLVTENNVMKIADFGLARDINNIDYYK------KTTNGRLPVKWMAPEALFDRVYTHQSDVWS----------FGVLM 249 (334)
T ss_dssp GGEEECTTCCEEECCCTTCEECTTTSSEE------CCSCCCCCGGGCCHHHHHHCEECHHHHHHH----------HHHHH
T ss_pred ceEEEcCCCCEEEcccccccccccccccc------ccCCCCcccceeChHHhcCCCcChHHHHHH----------HHHHH
Confidence 99999999999999999998665432111 111235789999999998888999999999 77788
Q ss_pred HHHHH-HhCCCcccccccccchhhhccccchhhhhhhhchHHHHHHHHHHhhccCCCCCCCCCCHHHHHHHHHHhhhhhh
Q 040925 751 HEFAK-TALPEKVMEIVDPSLLMEVMTNNSMIQEDKRVKTEECLNAIIRTGVLCSMESPFERMDMRDVVAKLCHTRETFL 829 (833)
Q Consensus 751 ~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~i~~~~~ 829 (833)
+++++ +..|+..... ........... ....+..++..+.+++.+||..||++|||++|+++.|+++.....
T Consensus 250 ~ellt~g~~p~~~~~~--~~~~~~~~~~~------~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~~L~~l~~~~~ 321 (334)
T 2pvf_A 250 WEIFTLGGSPYPGIPV--EELFKLLKEGH------RMDKPANCTNELYMMMRDCWHAVPSQRPTFKQLVEDLDRILTLTT 321 (334)
T ss_dssp HHHHTTSCCSSTTCCH--HHHHHHHHHTC------CCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHHC
T ss_pred HHHHhCCCCCcCcCCH--HHHHHHHhcCC------CCCCCccCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHhccc
Confidence 88887 7666642211 01100000000 011122345678999999999999999999999999999976543
No 185
>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A*
Probab=100.00 E-value=2.8e-37 Score=333.59 Aligned_cols=274 Identities=24% Similarity=0.318 Sum_probs=208.3
Q ss_pred HHHHHhcCCccCceeccCcceEEEEEEECCCceEEEEEEeeccCCcchhHHHHHHHHHhh--cCCCccceEeeEeecCCC
Q 040925 525 ELSKATGEFSSSNMIGQGSFGYVYKGTLGEDEMIVAVKVINLKYKGASRSFVAECEALRN--IRHRNLIKIITICSSTDF 602 (833)
Q Consensus 525 ~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~--l~h~niv~~~~~~~~~~~ 602 (833)
.-....++|++.+.||+|+||.||+|++ +++.||||+++.. ..+.+.+|.+++.. ++||||+++++++....
T Consensus 36 ~~~~~~~~y~~~~~lg~G~~g~Vy~~~~--~~~~vavK~~~~~---~~~~~~~e~~~~~~~~l~h~ni~~~~~~~~~~~- 109 (342)
T 1b6c_B 36 VQRTIARTIVLQESIGKGRFGEVWRGKW--RGEEVAVKIFSSR---EERSWFREAEIYQTVMLRHENILGFIAADNKDN- 109 (342)
T ss_dssp HHHHHHHHCEEEEEEEEETTEEEEEEEE--TTEEEEEEEECGG---GHHHHHHHHHHHHHSCCCCTTBCCEEEEEECCC-
T ss_pred ecccccccEEEEeeecCCCCcEEEEEEE--cCccEEEEEeCch---hHHHHHHHHHHHHHhhcCCCcEEEEEeeecccC-
Confidence 3344567899999999999999999998 5889999999632 34677889999888 68999999999986553
Q ss_pred CCCceEeEEEEecCCCChhhhhccCCCccccccCCHHHHHHHHHHHHHHHHHHh--------hcCCCCceeeCCCCCCee
Q 040925 603 KGTDFKAFVFEYMENGSLKDWLHQSDDQVEVCKLSLIQRVNIAIDVASAMEYLH--------HHCQPPMVHGDLKPSNVL 674 (833)
Q Consensus 603 ~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~gL~~LH--------~~~~~~ivH~Dlkp~NIl 674 (833)
......++||||+++|+|.+++... .+++.+++.++.|++.||+||| +. +|+||||||+||+
T Consensus 110 ~~~~~~~lv~e~~~~g~L~~~l~~~-------~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~---~ivH~Dlkp~NIl 179 (342)
T 1b6c_B 110 GTWTQLWLVSDYHEHGSLFDYLNRY-------TVTVEGMIKLALSTASGLAHLHMEIVGTQGKP---AIAHRDLKSKNIL 179 (342)
T ss_dssp SSCCCEEEEECCCTTCBHHHHHHHC-------CBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBC---EEECSCCSGGGEE
T ss_pred CccceeEEEEeecCCCcHHHHHhcc-------CccHHHHHHHHHHHHHHHHHHHHHHhhhcccC---CeeeCCCCHHHEE
Confidence 1223689999999999999999753 5899999999999999999999 77 9999999999999
Q ss_pred ecCCCcEEEcccccccccCcccccccccCCCccccccccccccCccccCCC------CCCcccccccCCcCCCccccCCc
Q 040925 675 LDHDMVAHVCDFGLAKFLSDHQLDTAVKTPSSSIGLKGTVGYVAPEYGMGS------EASMTGDIFTGRRPIDAVFNEGH 748 (833)
Q Consensus 675 l~~~~~~kL~DfG~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~------~~~~~~Di~s~~~~~~~~~~~g~ 748 (833)
++.++.+||+|||+++.......... .......||+.|+|||++.+. .++.++|||| +|+
T Consensus 180 l~~~~~~kL~Dfg~~~~~~~~~~~~~----~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~Di~s----------lG~ 245 (342)
T 1b6c_B 180 VKKNGTCCIADLGLAVRHDSATDTID----IAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYA----------MGL 245 (342)
T ss_dssp ECTTSCEEECCCTTCEEEETTTTEEE----ECCCSCCCCGGGCCHHHHTSCCCTTCHHHHHHHHHHH----------HHH
T ss_pred ECCCCCEEEEECCCceeccccccccc----cccccCCcCcccCCHhhhcccccccccccCCcccHHH----------HHH
Confidence 99999999999999976544321110 011234699999999998765 3447899999 788
Q ss_pred cHHHHHHH----------hCCCcccccccc---cchhhhccccchhhhhhhhchHHHHHHHHHHhhccCCCCCCCCCCHH
Q 040925 749 SLHEFAKT----------ALPEKVMEIVDP---SLLMEVMTNNSMIQEDKRVKTEECLNAIIRTGVLCSMESPFERMDMR 815 (833)
Q Consensus 749 ~l~~~~~~----------~~p~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~ 815 (833)
++++++++ ..|+......++ .+...............+....++++.+.+++.+||+.||++|||++
T Consensus 246 il~el~tg~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dp~~Rps~~ 325 (342)
T 1b6c_B 246 VFWEIARRCSIGGIHEDYQLPYYDLVPSDPSVEEMRKVVCEQKLRPNIPNRWQSCEALRVMAKIMRECWYANGAARLTAL 325 (342)
T ss_dssp HHHHHHTTBCBTTBCCCCCCTTTTTSCSSCCHHHHHHHHTTSCCCCCCCGGGGTSHHHHHHHHHHHHHCCSSGGGSCCHH
T ss_pred HHHHHHhccCcCCcccccccCccccCcCcccHHHHHHHHHHHHhCCCCcccccchhHHHHHHHHHHHHhccChhhCCCHH
Confidence 88888887 445432111111 11111111111111112223446788899999999999999999999
Q ss_pred HHHHHHHHhhhhh
Q 040925 816 DVVAKLCHTRETF 828 (833)
Q Consensus 816 eil~~L~~i~~~~ 828 (833)
||++.|+.+.+..
T Consensus 326 ~i~~~L~~i~~~~ 338 (342)
T 1b6c_B 326 RIKKTLSQLSQQE 338 (342)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHh
Confidence 9999999998754
No 186
>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...
Probab=100.00 E-value=2.5e-38 Score=353.60 Aligned_cols=260 Identities=27% Similarity=0.411 Sum_probs=202.1
Q ss_pred HHhcCCccCceeccCcceEEEEEEECCCceEEEEEEeeccCCcchhHHHHHHHHHhhcCCCccceEeeEeecCCCCCCce
Q 040925 528 KATGEFSSSNMIGQGSFGYVYKGTLGEDEMIVAVKVINLKYKGASRSFVAECEALRNIRHRNLIKIITICSSTDFKGTDF 607 (833)
Q Consensus 528 ~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~ 607 (833)
...++|++.+.||+|+||.||+|++.. +..||||+++... ...+.+.+|++++++++||||+++++++.. ..
T Consensus 181 i~~~~~~~~~~lG~G~fg~Vy~~~~~~-~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~------~~ 252 (452)
T 1fmk_A 181 IPRESLRLEVKLGQGCFGEVWMGTWNG-TTRVAIKTLKPGT-MSPEAFLQEAQVMKKLRHEKLVQLYAVVSE------EP 252 (452)
T ss_dssp CCGGGEEEEEEEEECSSCEEEEEEETT-TEEEEEEECCTTS-SCHHHHHHHHHHHHHCCCTTBCCEEEEECS------SS
T ss_pred cChhHceeeeeecCCCCeEEEEEEECC-CceEEEEEeccCC-CCHHHHHHHHHHHHhCCCCCEeeEEEEEcC------Cc
Confidence 345679999999999999999999974 5679999997543 345689999999999999999999999754 25
Q ss_pred EeEEEEecCCCChhhhhccCCCccccccCCHHHHHHHHHHHHHHHHHHhhcCCCCceeeCCCCCCeeecCCCcEEEcccc
Q 040925 608 KAFVFEYMENGSLKDWLHQSDDQVEVCKLSLIQRVNIAIDVASAMEYLHHHCQPPMVHGDLKPSNVLLDHDMVAHVCDFG 687 (833)
Q Consensus 608 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~gL~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kL~DfG 687 (833)
.++||||+++|+|.+++..... ..+++.+++.++.|++.||+|||++ +|+||||||+||+++.++.+||+|||
T Consensus 253 ~~iv~e~~~~gsL~~~l~~~~~----~~~~~~~~~~i~~qi~~~l~~LH~~---~ivHrDlkp~Nill~~~~~~kl~DfG 325 (452)
T 1fmk_A 253 IYIVTEYMSKGSLLDFLKGETG----KYLRLPQLVDMAAQIASGMAYVERM---NYVHRDLRAANILVGENLVCKVADFG 325 (452)
T ss_dssp CEEEECCCTTCBHHHHHSHHHH----TTCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECGGGCEEECCCC
T ss_pred eEEEehhhcCCCHHHHHHhcCC----CCCCHHHHHHHHHHHHHHHHHHHhC---CeeCCCCChhhEEECCCCCEEECCCc
Confidence 7899999999999999975321 1589999999999999999999999 99999999999999999999999999
Q ss_pred cccccCcccccccccCCCccccccccccccCccccCCCCCCcccccccCCcCCCccccCCccHHHHHH-HhCCCcccccc
Q 040925 688 LAKFLSDHQLDTAVKTPSSSIGLKGTVGYVAPEYGMGSEASMTGDIFTGRRPIDAVFNEGHSLHEFAK-TALPEKVMEIV 766 (833)
Q Consensus 688 ~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~s~~~~~~~~~~~g~~l~~~~~-~~~p~~~~~~~ 766 (833)
+++........ ......+|+.|+|||++.+..++.++|||| +|++++++++ +..|+.....
T Consensus 326 ~a~~~~~~~~~-------~~~~~~~~~~y~aPE~~~~~~~~~~sDvws----------lG~~l~el~t~g~~P~~~~~~- 387 (452)
T 1fmk_A 326 LARLIEDNEYT-------ARQGAKFPIKWTAPEAALYGRFTIKSDVWS----------FGILLTELTTKGRVPYPGMVN- 387 (452)
T ss_dssp TTC---------------------CCGGGSCHHHHHHCCCCHHHHHHH----------HHHHHHHHHTTTCCSSTTCCH-
T ss_pred cceecCCCcee-------cccCCcccccccCHhHHhcCCCCccccHHh----------HHHHHHHHHhCCCCCCCCCCH-
Confidence 99876543211 112235788999999998889999999999 7888888888 7777642211
Q ss_pred cccchhhhccccchhhhhhhhchHHHHHHHHHHhhccCCCCCCCCCCHHHHHHHHHHhhhh
Q 040925 767 DPSLLMEVMTNNSMIQEDKRVKTEECLNAIIRTGVLCSMESPFERMDMRDVVAKLCHTRET 827 (833)
Q Consensus 767 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~i~~~ 827 (833)
........... ....+..+++.+.+++.+||+.||++|||++++++.|+.+...
T Consensus 388 -~~~~~~i~~~~------~~~~~~~~~~~l~~li~~cl~~dP~~Rpt~~~l~~~L~~~~~~ 441 (452)
T 1fmk_A 388 -REVLDQVERGY------RMPCPPECPESLHDLMCQCWRKEPEERPTFEYLQAFLEDYFTS 441 (452)
T ss_dssp -HHHHHHHHTTC------CCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTTTSC
T ss_pred -HHHHHHHHcCC------CCCCCCCCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHhcc
Confidence 11111111110 0112234567889999999999999999999999999988654
No 187
>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} SCOP: d.144.1.7 PDB: 4fk3_A* 3c4c_A* 3c4d_A* 3idp_A* 4g9r_A* 3ii5_A* 4e26_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 3d4q_A* 4e4x_A* 4g9c_A* ...
Probab=100.00 E-value=7.7e-38 Score=329.10 Aligned_cols=261 Identities=28% Similarity=0.413 Sum_probs=194.4
Q ss_pred hcCCccCceeccCcceEEEEEEECCCceEEEEEEeeccCC--cchhHHHHHHHHHhhcCCCccceEeeEeecCCCCCCce
Q 040925 530 TGEFSSSNMIGQGSFGYVYKGTLGEDEMIVAVKVINLKYK--GASRSFVAECEALRNIRHRNLIKIITICSSTDFKGTDF 607 (833)
Q Consensus 530 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~--~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~ 607 (833)
.++|++.+.||+|+||.||+|++.. .||+|+++.... ...+.+.+|++++++++||||+++++++.. ..
T Consensus 23 ~~~y~~~~~lG~G~~g~Vy~~~~~~---~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~------~~ 93 (289)
T 3og7_A 23 DGQITVGQRIGSGSFGTVYKGKWHG---DVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYSTA------PQ 93 (289)
T ss_dssp TTSCEEEEEEEECSSEEEEEEESSS---EEEEEEESCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECS------SS
T ss_pred ccceeeeeEecCCCCeEEEEEEEcC---ceEEEEEeccCCCHHHHHHHHHHHHHHHhCCCCcEEEEEeeccC------Cc
Confidence 4689999999999999999998753 499999975433 234678999999999999999999997533 25
Q ss_pred EeEEEEecCCCChhhhhccCCCccccccCCHHHHHHHHHHHHHHHHHHhhcCCCCceeeCCCCCCeeecCCCcEEEcccc
Q 040925 608 KAFVFEYMENGSLKDWLHQSDDQVEVCKLSLIQRVNIAIDVASAMEYLHHHCQPPMVHGDLKPSNVLLDHDMVAHVCDFG 687 (833)
Q Consensus 608 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~gL~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kL~DfG 687 (833)
.++||||+++++|.+++..... .+++.+++.++.|++.||+|||+. +|+||||||+||+++.++.+||+|||
T Consensus 94 ~~lv~e~~~~~~L~~~l~~~~~-----~~~~~~~~~i~~qi~~~L~~lH~~---~i~H~Dlkp~Nil~~~~~~~kl~Dfg 165 (289)
T 3og7_A 94 LAIVTQWCEGSSLYHHLHASET-----KFEMKKLIDIARQTARGMDYLHAK---SIIHRDLKSNNIFLHEDNTVKIGDFG 165 (289)
T ss_dssp CEEEEECCCEEEHHHHHTTC--------CCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEEETTTEEEECCCC
T ss_pred cEEEEEecCCCcHHHHHhhccC-----CCCHHHHHHHHHHHHHHHHHHHhC---CcccccCccceEEECCCCCEEEccce
Confidence 7899999999999999975542 689999999999999999999999 99999999999999999999999999
Q ss_pred cccccCcccccccccCCCccccccccccccCccccC---CCCCCcccccccCCcCCCccccCCccHHHHHHHhCCCcccc
Q 040925 688 LAKFLSDHQLDTAVKTPSSSIGLKGTVGYVAPEYGM---GSEASMTGDIFTGRRPIDAVFNEGHSLHEFAKTALPEKVME 764 (833)
Q Consensus 688 ~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~---~~~~~~~~Di~s~~~~~~~~~~~g~~l~~~~~~~~p~~~~~ 764 (833)
+++........ .......||+.|+|||++. +..++.++|||| .|+++++++++..|+....
T Consensus 166 ~~~~~~~~~~~------~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~s----------lG~il~el~~g~~p~~~~~ 229 (289)
T 3og7_A 166 LATEKSRWSGS------HQFEQLSGSILWMAPEVIRMQDSNPYSFQSDVYA----------FGIVLYELMTGQLPYSNIN 229 (289)
T ss_dssp ------------------------CCCTTCCHHHHC----CCSCHHHHHHH----------HHHHHHHHHHSSCTTSSCC
T ss_pred ecccccccccc------ccccccCCCccccCchhhcccCCCCCCcccchHH----------HHHHHHHHHHCCCCccccc
Confidence 99765432111 1122356999999999886 667889999999 8889999999998875322
Q ss_pred cccccchhhhccccchhhhhhhhchHHHHHHHHHHhhccCCCCCCCCCCHHHHHHHHHHhhh
Q 040925 765 IVDPSLLMEVMTNNSMIQEDKRVKTEECLNAIIRTGVLCSMESPFERMDMRDVVAKLCHTRE 826 (833)
Q Consensus 765 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~i~~ 826 (833)
.. ............ .+........+++.+.+++.+||+.||++|||++|+++.|+++.+
T Consensus 230 ~~--~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~ell~~L~~l~~ 288 (289)
T 3og7_A 230 NR--DQIIEMVGRGSL-SPDLSKVRSNCPKRMKRLMAECLKKKRDERPSFPRILAEIEELAR 288 (289)
T ss_dssp CH--HHHHHHHHHTSC-CCCTTSSCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHTTC
T ss_pred hH--HHHHHHhccccc-CcchhhccccCCHHHHHHHHHHccCChhhCCCHHHHHHHHHHHhh
Confidence 11 111111111000 000111123456789999999999999999999999999998864
No 188
>1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen typrosine kinase, active conformation, structural genomics, structural genomix; HET: STI; 1.57A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A* 3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A* 3vf9_A*
Probab=100.00 E-value=5.9e-38 Score=330.45 Aligned_cols=263 Identities=22% Similarity=0.292 Sum_probs=205.3
Q ss_pred HhcCCccCc-eeccCcceEEEEEEE--CCCceEEEEEEeeccCC--cchhHHHHHHHHHhhcCCCccceEeeEeecCCCC
Q 040925 529 ATGEFSSSN-MIGQGSFGYVYKGTL--GEDEMIVAVKVINLKYK--GASRSFVAECEALRNIRHRNLIKIITICSSTDFK 603 (833)
Q Consensus 529 ~~~~y~~~~-~lg~G~~g~Vy~~~~--~~~~~~vavK~~~~~~~--~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~ 603 (833)
..++|.+.+ .||+|+||.||+|.+ ..+++.||||+++.... ...+.+.+|++++++++||||+++++++..
T Consensus 14 ~~~~y~~~~~~lg~G~~g~Vy~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~---- 89 (291)
T 1xbb_A 14 DRKLLTLEDKELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRMIGICEA---- 89 (291)
T ss_dssp CGGGEEEEEEEEEECSSEEEEEEEEECSSSEEEEEEEEEC-----CHHHHHHHHHHHHHHTCCCTTBCCEEEEEES----
T ss_pred cchhhhhccCccccccCeeeEeeeecCCCceeeEEEEeecccccCHHHHHHHHHHHHHHHhCCCCCEEEEEEEECC----
Confidence 346788888 999999999999954 56688999999975432 235679999999999999999999999732
Q ss_pred CCceEeEEEEecCCCChhhhhccCCCccccccCCHHHHHHHHHHHHHHHHHHhhcCCCCceeeCCCCCCeeecCCCcEEE
Q 040925 604 GTDFKAFVFEYMENGSLKDWLHQSDDQVEVCKLSLIQRVNIAIDVASAMEYLHHHCQPPMVHGDLKPSNVLLDHDMVAHV 683 (833)
Q Consensus 604 ~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~gL~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kL 683 (833)
+..++||||+++|+|.+++.... .+++..++.++.|++.||+|||+. +|+||||||+||+++.++.+||
T Consensus 90 --~~~~lv~e~~~~~~L~~~l~~~~------~~~~~~~~~i~~qi~~~l~~LH~~---~i~H~dikp~Nil~~~~~~~kl 158 (291)
T 1xbb_A 90 --ESWMLVMEMAELGPLNKYLQQNR------HVKDKNIIELVHQVSMGMKYLEES---NFVHRDLAARNVLLVTQHYAKI 158 (291)
T ss_dssp --SSEEEEEECCTTEEHHHHHHHCT------TCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEEETTEEEE
T ss_pred --CCcEEEEEeCCCCCHHHHHHhCc------CCCHHHHHHHHHHHHHHHHHHHhC---CeEcCCCCcceEEEeCCCcEEE
Confidence 25789999999999999998754 689999999999999999999999 9999999999999999999999
Q ss_pred cccccccccCcccccccccCCCccccccccccccCccccCCCCCCcccccccCCcCCCccccCCccHHHHHH-HhCCCcc
Q 040925 684 CDFGLAKFLSDHQLDTAVKTPSSSIGLKGTVGYVAPEYGMGSEASMTGDIFTGRRPIDAVFNEGHSLHEFAK-TALPEKV 762 (833)
Q Consensus 684 ~DfG~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~s~~~~~~~~~~~g~~l~~~~~-~~~p~~~ 762 (833)
+|||++........... ......||+.|+|||++.+..++.++|||| +|++++++++ +..|+..
T Consensus 159 ~Dfg~~~~~~~~~~~~~-----~~~~~~~~~~y~aPE~~~~~~~~~~~Di~s----------lG~il~~l~~~g~~p~~~ 223 (291)
T 1xbb_A 159 SDFGLSKALRADENYYK-----AQTHGKWPVKWYAPECINYYKFSSKSDVWS----------FGVLMWEAFSYGQKPYRG 223 (291)
T ss_dssp CCCTTCEECCTTCSEEE-----C----CCCGGGCCHHHHHHCEEEHHHHHHH----------HHHHHHHHHTTTCCSSTT
T ss_pred ccCCcceeeccCCCccc-----ccccCCCCceeeChHHhccCCCChhhhHHH----------HHHHHHHHHhcCCCCCCC
Confidence 99999987654322111 111234788999999998888999999999 7888888888 7777653
Q ss_pred cccccccchhhhccccchhhhhhhhchHHHHHHHHHHhhccCCCCCCCCCCHHHHHHHHHHhhhhhh
Q 040925 763 MEIVDPSLLMEVMTNNSMIQEDKRVKTEECLNAIIRTGVLCSMESPFERMDMRDVVAKLCHTRETFL 829 (833)
Q Consensus 763 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~i~~~~~ 829 (833)
.... .. ........ ....+..+++.+.+++.+||+.||++|||+.++++.|+++.....
T Consensus 224 ~~~~--~~-~~~~~~~~-----~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~L~~~~~~~~ 282 (291)
T 1xbb_A 224 MKGS--EV-TAMLEKGE-----RMGCPAGCPREMYDLMNLCWTYDVENRPGFAAVELRLRNYYYDVV 282 (291)
T ss_dssp CCHH--HH-HHHHHTTC-----CCCCCTTCCHHHHHHHHHHTCSSTTTSCCHHHHHHHHHHHHHHHH
T ss_pred CCHH--HH-HHHHHcCC-----CCCCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHHHh
Confidence 2211 11 11111000 011123456778999999999999999999999999999986544
No 189
>3oz6_A Mitogen-activated protein kinase 1, serine/threon protein kinase; structural genomics consortium, SGC, transferase; 2.37A {Cryptosporidium parvum iowa II}
Probab=100.00 E-value=5.1e-38 Score=345.01 Aligned_cols=269 Identities=21% Similarity=0.301 Sum_probs=191.8
Q ss_pred HHhcCCccCceeccCcceEEEEEEECCCceEEEEEEeeccC--CcchhHHHHHHHHHhhcC-CCccceEeeEeecCCCCC
Q 040925 528 KATGEFSSSNMIGQGSFGYVYKGTLGEDEMIVAVKVINLKY--KGASRSFVAECEALRNIR-HRNLIKIITICSSTDFKG 604 (833)
Q Consensus 528 ~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~-h~niv~~~~~~~~~~~~~ 604 (833)
...++|++.+.||+|+||.||+|.+..+++.||||++.... ....+.+.+|+.+++++. ||||+++++++...+
T Consensus 6 ~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~i~~~~~~~~~~~~~~~E~~~l~~l~~h~niv~l~~~~~~~~--- 82 (388)
T 3oz6_A 6 HVLRKYELVKKLGKGAYGIVWKSIDRRTGEVVAVKKIFDAFQNSTDAQRTFREIMILTELSGHENIVNLLNVLRADN--- 82 (388)
T ss_dssp HHHTTEEEEEC-------CEEEEEETTTCCEEEEEEECC--CCHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECTT---
T ss_pred cccCceEEEEEeeeCCCeEEEEEEECCCCCEEEEEEecccccChHHHHHHHHHHHHHHhccCCCCCCeeeeEEecCC---
Confidence 34578999999999999999999999999999999986432 233467889999999997 999999999986533
Q ss_pred CceEeEEEEecCCCChhhhhccCCCccccccCCHHHHHHHHHHHHHHHHHHhhcCCCCceeeCCCCCCeeecCCCcEEEc
Q 040925 605 TDFKAFVFEYMENGSLKDWLHQSDDQVEVCKLSLIQRVNIAIDVASAMEYLHHHCQPPMVHGDLKPSNVLLDHDMVAHVC 684 (833)
Q Consensus 605 ~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~gL~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kL~ 684 (833)
....|+||||++ |+|.+++... .+++..+..++.|++.||+|||+. ||+||||||+||+++.++.+||+
T Consensus 83 ~~~~~lv~e~~~-~~L~~~~~~~-------~~~~~~~~~i~~qi~~~L~~LH~~---~ivHrDlkp~NIll~~~~~~kl~ 151 (388)
T 3oz6_A 83 DRDVYLVFDYME-TDLHAVIRAN-------ILEPVHKQYVVYQLIKVIKYLHSG---GLLHRDMKPSNILLNAECHVKVA 151 (388)
T ss_dssp SSCEEEEEECCS-EEHHHHHHHT-------CCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTCCEEEC
T ss_pred CCEEEEEecccC-cCHHHHHHcC-------CCCHHHHHHHHHHHHHHHHHHHhC---CEEeCCCCHHHeEEcCCCCEEec
Confidence 346899999997 5999999763 589999999999999999999999 99999999999999999999999
Q ss_pred ccccccccCccccccc-------------ccCCCccccccccccccCccccCC-CCCCcccccccCCcCCCccccCCccH
Q 040925 685 DFGLAKFLSDHQLDTA-------------VKTPSSSIGLKGTVGYVAPEYGMG-SEASMTGDIFTGRRPIDAVFNEGHSL 750 (833)
Q Consensus 685 DfG~a~~~~~~~~~~~-------------~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Di~s~~~~~~~~~~~g~~l 750 (833)
|||+|+.......... ..........+||+.|+|||++.+ ..++.++|||| .|+++
T Consensus 152 DFG~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwS----------lG~il 221 (388)
T 3oz6_A 152 DFGLSRSFVNIRRVTNNIPLSINENTENFDDDQPILTDYVATRWYRAPEILLGSTKYTKGIDMWS----------LGCIL 221 (388)
T ss_dssp CCTTCEESSSCCCCCCCGGGCCC---------------CCCGGGGCCHHHHTTCCCCCTHHHHHH----------HHHHH
T ss_pred CCcccccccccccccccccccccccccccccccccccCCcccCCcCCHHHhcCCCCCCChhhHHH----------HHHHH
Confidence 9999986543111000 001112334689999999999876 67899999999 78888
Q ss_pred HHHHHHhCCCcccccccccch-hhhcc-----------ccchh-------------hhhhh-------------hchHHH
Q 040925 751 HEFAKTALPEKVMEIVDPSLL-MEVMT-----------NNSMI-------------QEDKR-------------VKTEEC 792 (833)
Q Consensus 751 ~~~~~~~~p~~~~~~~~~~~~-~~~~~-----------~~~~~-------------~~~~~-------------~~~~~~ 792 (833)
++++++..|+......+.-.. ..... ..... ..... .....+
T Consensus 222 ~ell~g~~pf~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (388)
T 3oz6_A 222 GEILCGKPIFPGSSTMNQLERIIGVIDFPSNEDVESIQSPFAKTMIESLKEKVEIRQSNKRDIFTKWKNLLLKINPKADC 301 (388)
T ss_dssp HHHHHSSCSCCCSSHHHHHHHHHHHHCCCCHHHHHTSCCSSHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHCTTCCC
T ss_pred HHHHhCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHhccCHHHHHHHHhCcccccccCCCHHHhCcchhhhcccccccccC
Confidence 888888877642211100000 00000 00000 00000 000123
Q ss_pred HHHHHHHhhccCCCCCCCCCCHHHHHHH
Q 040925 793 LNAIIRTGVLCSMESPFERMDMRDVVAK 820 (833)
Q Consensus 793 ~~~l~~li~~cl~~dP~~RPt~~eil~~ 820 (833)
++.+.+++.+||..||++|||++|+++.
T Consensus 302 ~~~~~dll~~~L~~dP~~R~t~~e~l~H 329 (388)
T 3oz6_A 302 NEEALDLLDKLLQFNPNKRISANDALKH 329 (388)
T ss_dssp CHHHHHHHHHHCCSSGGGSCCHHHHTTS
T ss_pred CHHHHHHHHHhhccCcccCCCHHHHhCC
Confidence 5678899999999999999999999875
No 190
>3bhy_A Death-associated protein kinase 3; death associated kinase, DAPK3, ZIP kinase, ZIPK, DAP kinase like kinase, DLK, structural genomics consortium; HET: 7CP; 1.24A {Homo sapiens} PDB: 3bqr_A* 2j90_A* 1yrp_A* 2yak_A* 2y4p_A* 3f5u_A* 1jks_A 1jkk_A* 1ig1_A* 1jkl_A 1jkt_A 3eh9_A* 3eha_A* 3f5g_A* 1p4f_A* 1wvw_A 1wvx_A* 1wvy_A* 2w4j_A* 3dgk_A ...
Probab=100.00 E-value=1.6e-37 Score=325.93 Aligned_cols=257 Identities=21% Similarity=0.243 Sum_probs=203.4
Q ss_pred cCCccCceeccCcceEEEEEEECCCceEEEEEEeeccCC------cchhHHHHHHHHHhhcCCCccceEeeEeecCCCCC
Q 040925 531 GEFSSSNMIGQGSFGYVYKGTLGEDEMIVAVKVINLKYK------GASRSFVAECEALRNIRHRNLIKIITICSSTDFKG 604 (833)
Q Consensus 531 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~------~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~ 604 (833)
++|++.+.||+|+||.||+|++..+++.||+|+++.... ...+.+.+|+.++++++||||+++++++....
T Consensus 5 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~--- 81 (283)
T 3bhy_A 5 DHYEMGEELGSGQFAIVRKCRQKGTGKEYAAKFIKKRRLSSSRRGVSREEIEREVNILREIRHPNIITLHDIFENKT--- 81 (283)
T ss_dssp HHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSS---
T ss_pred hhhhhHHhhcccCceEEEEEEEcCCCCeeehHHhhhccccccccchHHHHHHHHHHHHHhCCCCCeeehhheecCCC---
Confidence 579999999999999999999998999999999975422 13567899999999999999999999976554
Q ss_pred CceEeEEEEecCCCChhhhhccCCCccccccCCHHHHHHHHHHHHHHHHHHhhcCCCCceeeCCCCCCeeecCCC----c
Q 040925 605 TDFKAFVFEYMENGSLKDWLHQSDDQVEVCKLSLIQRVNIAIDVASAMEYLHHHCQPPMVHGDLKPSNVLLDHDM----V 680 (833)
Q Consensus 605 ~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~gL~~LH~~~~~~ivH~Dlkp~NIll~~~~----~ 680 (833)
..++||||+++++|.+++.... .+++.+++.++.|++.||+|||+. +|+||||||+||+++.++ .
T Consensus 82 --~~~lv~e~~~~~~L~~~l~~~~------~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~~~~ 150 (283)
T 3bhy_A 82 --DVVLILELVSGGELFDFLAEKE------SLTEDEATQFLKQILDGVHYLHSK---RIAHFDLKPENIMLLDKNVPNPR 150 (283)
T ss_dssp --EEEEEEECCCSCBHHHHHHHHS------SCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEESCSSSSSCC
T ss_pred --eEEEEEeecCCCcHHHHHHhcC------CCCHHHHHHHHHHHHHHHHHHHhC---CccCCCCChHHEEEecCCCCCCc
Confidence 8999999999999999997643 689999999999999999999999 999999999999998877 8
Q ss_pred EEEcccccccccCcccccccccCCCccccccccccccCccccCCCCCCcccccccCCcCCCccccCCccHHHHHHHhCCC
Q 040925 681 AHVCDFGLAKFLSDHQLDTAVKTPSSSIGLKGTVGYVAPEYGMGSEASMTGDIFTGRRPIDAVFNEGHSLHEFAKTALPE 760 (833)
Q Consensus 681 ~kL~DfG~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~s~~~~~~~~~~~g~~l~~~~~~~~p~ 760 (833)
+||+|||++........ .....||+.|+|||++.+..++.++|||| +|+++++++++..|+
T Consensus 151 ~kl~dfg~~~~~~~~~~---------~~~~~~~~~y~aPE~~~~~~~~~~~Di~s----------lG~il~~l~~g~~p~ 211 (283)
T 3bhy_A 151 IKLIDFGIAHKIEAGNE---------FKNIFGTPEFVAPEIVNYEPLGLEADMWS----------IGVITYILLSGASPF 211 (283)
T ss_dssp EEECCCTTCEECC-----------------CCCGGGCCHHHHTTCCCCTHHHHHH----------HHHHHHHHHHSSCTT
T ss_pred eEEEecccceeccCCCc---------ccccCCCcCccCcceecCCCCCcchhhhh----------HHHHHHHHHHCCCCC
Confidence 99999999986644221 12346999999999999999999999999 888899999998887
Q ss_pred cccccccccchhhhccccchhhhhhhhchHHHHHHHHHHhhccCCCCCCCCCCHHHHHHH--HHHhh
Q 040925 761 KVMEIVDPSLLMEVMTNNSMIQEDKRVKTEECLNAIIRTGVLCSMESPFERMDMRDVVAK--LCHTR 825 (833)
Q Consensus 761 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~--L~~i~ 825 (833)
...... ............. .......++..+.+++.+||..||++|||+.|+++. ++.+.
T Consensus 212 ~~~~~~--~~~~~~~~~~~~~---~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~~~l~h~~~~~~~ 273 (283)
T 3bhy_A 212 LGETKQ--ETLTNISAVNYDF---DEEYFSNTSELAKDFIRRLLVKDPKRRMTIAQSLEHSWIKAIR 273 (283)
T ss_dssp CCSSHH--HHHHHHHTTCCCC---CHHHHTTCCHHHHHHHHTTSCSSGGGSCCHHHHHHCHHHHHHH
T ss_pred CCcchH--HHHHHhHhcccCC---cchhcccCCHHHHHHHHHHccCCHhHCcCHHHHHhCHHHHHHH
Confidence 532211 1111111110000 011112345678899999999999999999999984 44443
No 191
>1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=8.7e-38 Score=328.41 Aligned_cols=263 Identities=21% Similarity=0.319 Sum_probs=206.9
Q ss_pred cCCccCc-eeccCcceEEEEEEEC--CCceEEEEEEeeccCC-cchhHHHHHHHHHhhcCCCccceEeeEeecCCCCCCc
Q 040925 531 GEFSSSN-MIGQGSFGYVYKGTLG--EDEMIVAVKVINLKYK-GASRSFVAECEALRNIRHRNLIKIITICSSTDFKGTD 606 (833)
Q Consensus 531 ~~y~~~~-~lg~G~~g~Vy~~~~~--~~~~~vavK~~~~~~~-~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~ 606 (833)
++|.+.+ .||+|+||.||+|++. .++..||||+++.... ...+.+.+|++++++++||||+++++++.. +
T Consensus 9 ~~~~i~~~~lg~G~~g~Vy~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~------~ 82 (287)
T 1u59_A 9 DNLLIADIELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIGVCQA------E 82 (287)
T ss_dssp GGEEEEEEEEECCTTEEEEEEEEC---CCEEEEEEEECSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEES------S
T ss_pred HHhhhhhccccccCceeEEEeEeccCCCcceEEEEecCCccchhHHHHHHHHHHHHHhCCCCCEeEEEEEecC------C
Confidence 5677776 9999999999999864 4688899999975432 345678999999999999999999999732 2
Q ss_pred eEeEEEEecCCCChhhhhccCCCccccccCCHHHHHHHHHHHHHHHHHHhhcCCCCceeeCCCCCCeeecCCCcEEEccc
Q 040925 607 FKAFVFEYMENGSLKDWLHQSDDQVEVCKLSLIQRVNIAIDVASAMEYLHHHCQPPMVHGDLKPSNVLLDHDMVAHVCDF 686 (833)
Q Consensus 607 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~gL~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kL~Df 686 (833)
..++||||+++|+|.+++..... .+++..++.++.|++.||.|||+. +|+||||||+||+++.++.+||+||
T Consensus 83 ~~~lv~e~~~~~~L~~~l~~~~~-----~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dlkp~Nili~~~~~~kl~Df 154 (287)
T 1u59_A 83 ALMLVMEMAGGGPLHKFLVGKRE-----EIPVSNVAELLHQVSMGMKYLEEK---NFVHRDLAARNVLLVNRHYAKISDF 154 (287)
T ss_dssp SEEEEEECCTTEEHHHHHTTCTT-----TSCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEEEETTEEEECCC
T ss_pred CcEEEEEeCCCCCHHHHHHhCCc-----cCCHHHHHHHHHHHHHHHHHHHHC---CEeeCCCchheEEEcCCCCEEECcc
Confidence 58999999999999999975432 689999999999999999999999 9999999999999999999999999
Q ss_pred ccccccCcccccccccCCCccccccccccccCccccCCCCCCcccccccCCcCCCccccCCccHHHHHH-HhCCCccccc
Q 040925 687 GLAKFLSDHQLDTAVKTPSSSIGLKGTVGYVAPEYGMGSEASMTGDIFTGRRPIDAVFNEGHSLHEFAK-TALPEKVMEI 765 (833)
Q Consensus 687 G~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~s~~~~~~~~~~~g~~l~~~~~-~~~p~~~~~~ 765 (833)
|+++.......... ......||+.|+|||++.+..++.++|||| +|++++++++ +..|+.....
T Consensus 155 g~~~~~~~~~~~~~-----~~~~~~~~~~y~aPE~~~~~~~~~~~Di~s----------lG~il~ellt~g~~p~~~~~~ 219 (287)
T 1u59_A 155 GLSKALGADDSYYT-----ARSAGKWPLKWYAPECINFRKFSSRSDVWS----------YGVTMWEALSYGQKPYKKMKG 219 (287)
T ss_dssp TTCEECTTCSCEEC-----CCCSSCCCGGGCCHHHHHHCEECHHHHHHH----------HHHHHHHHHTTSCCTTTTCCT
T ss_pred cceeeeccCcceee-----ccccccccccccCHHHhccCCCCchhhHHH----------HHHHHHHHHcCCCCCcccCCH
Confidence 99987654321111 112234789999999998888999999999 7888888887 7777653221
Q ss_pred ccccchhhhccccchhhhhhhhchHHHHHHHHHHhhccCCCCCCCCCCHHHHHHHHHHhhhhhhc
Q 040925 766 VDPSLLMEVMTNNSMIQEDKRVKTEECLNAIIRTGVLCSMESPFERMDMRDVVAKLCHTRETFLG 830 (833)
Q Consensus 766 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~i~~~~~~ 830 (833)
........... ....+..+++.+.+++.+||..||++|||+.|+++.|+++..+...
T Consensus 220 --~~~~~~i~~~~------~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~l~~~~~~~~~ 276 (287)
T 1u59_A 220 --PEVMAFIEQGK------RMECPPECPPELYALMSDCWIYKWEDRPDFLTVEQRMRACYYSLAS 276 (287)
T ss_dssp --HHHHHHHHTTC------CCCCCTTCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHHHHHHHHHT
T ss_pred --HHHHHHHhcCC------cCCCCCCcCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHhcCC
Confidence 11111111110 0111234567889999999999999999999999999999876543
No 192
>3is5_A Calcium-dependent protein kinase; CDPK, structural genomics, parasitology, structural genomics consortium, SGC, ATP-binding, nucleotide-binding; HET: ANP; 2.55A {Toxoplasma gondii}
Probab=100.00 E-value=9.4e-38 Score=327.63 Aligned_cols=253 Identities=23% Similarity=0.284 Sum_probs=195.8
Q ss_pred cCCccCceeccCcceEEEEEEECCCceEEEEEEeeccC-CcchhHHHHHHHHHhhcCCCccceEeeEeecCCCCCCceEe
Q 040925 531 GEFSSSNMIGQGSFGYVYKGTLGEDEMIVAVKVINLKY-KGASRSFVAECEALRNIRHRNLIKIITICSSTDFKGTDFKA 609 (833)
Q Consensus 531 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~~ 609 (833)
++|.+.+.||+|+||.||+|++..+++.||+|++.... ....+.+.+|++++++++||||+++++++.... ..+
T Consensus 22 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~-----~~~ 96 (285)
T 3is5_A 22 DLFIFKRKLGSGAFGDVHLVEERSSGLERVIKTINKDRSQVPMEQIEAEIEVLKSLDHPNIIKIFEVFEDYH-----NMY 96 (285)
T ss_dssp HHEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEGGGCCSCHHHHHHHHHHHHTCCCTTBCCEEEEEECSS-----EEE
T ss_pred hheeecceeccCCCeEEEEEEEccCCceEEEEEeeccccchhHHHHHHHHHHHHhCCCchHHhHHHheecCC-----eEE
Confidence 57999999999999999999999999999999997543 334578999999999999999999999976554 899
Q ss_pred EEEEecCCCChhhhhccCCCccccccCCHHHHHHHHHHHHHHHHHHhhcCCCCceeeCCCCCCeee---cCCCcEEEccc
Q 040925 610 FVFEYMENGSLKDWLHQSDDQVEVCKLSLIQRVNIAIDVASAMEYLHHHCQPPMVHGDLKPSNVLL---DHDMVAHVCDF 686 (833)
Q Consensus 610 lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~gL~~LH~~~~~~ivH~Dlkp~NIll---~~~~~~kL~Df 686 (833)
+||||+++|+|.+++...... ...+++..++.++.|++.||+|||+. +|+||||||+||++ +.++.+||+||
T Consensus 97 lv~e~~~~~~L~~~l~~~~~~--~~~~~~~~~~~i~~qi~~~L~~LH~~---~ivH~dikp~NIl~~~~~~~~~~kl~Df 171 (285)
T 3is5_A 97 IVMETCEGGELLERIVSAQAR--GKALSEGYVAELMKQMMNALAYFHSQ---HVVHKDLKPENILFQDTSPHSPIKIIDF 171 (285)
T ss_dssp EEECCCSCCBHHHHHHHHHHH--TCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCSGGGEEESSSSTTCCEEECCC
T ss_pred EEEEeCCCCcHHHHHHhhhhc--ccCCCHHHHHHHHHHHHHHHHHHHhC---CEEECCCCHHHEEEecCCCCCCEEEEee
Confidence 999999999999998653211 12689999999999999999999999 99999999999999 45678999999
Q ss_pred ccccccCcccccccccCCCccccccccccccCccccCCCCCCcccccccCCcCCCccccCCccHHHHHHHhCCCcccccc
Q 040925 687 GLAKFLSDHQLDTAVKTPSSSIGLKGTVGYVAPEYGMGSEASMTGDIFTGRRPIDAVFNEGHSLHEFAKTALPEKVMEIV 766 (833)
Q Consensus 687 G~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~s~~~~~~~~~~~g~~l~~~~~~~~p~~~~~~~ 766 (833)
|++........ .....||+.|+|||++. ..++.++|||| .|+++++++++..|+......
T Consensus 172 g~a~~~~~~~~---------~~~~~~t~~y~aPE~~~-~~~~~~~Di~s----------lG~il~~ll~g~~pf~~~~~~ 231 (285)
T 3is5_A 172 GLAELFKSDEH---------STNAAGTALYMAPEVFK-RDVTFKCDIWS----------AGVVMYFLLTGCLPFTGTSLE 231 (285)
T ss_dssp CCCCC-------------------CTTGGGCCHHHHT-TCCCHHHHHHH----------HHHHHHHHHHSSCSSCCSSHH
T ss_pred ecceecCCccc---------CcCcccccCcCChHHhc-cCCCcccCeeh----------HHHHHHHHHhCCCCCCCCCHH
Confidence 99986544221 12346999999999875 46899999999 888999999999887532211
Q ss_pred cccchhhhccccchhhhhhhhchHHHHHHHHHHhhccCCCCCCCCCCHHHHHH
Q 040925 767 DPSLLMEVMTNNSMIQEDKRVKTEECLNAIIRTGVLCSMESPFERMDMRDVVA 819 (833)
Q Consensus 767 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~ 819 (833)
+.. .......... .......++.+.+++.+||+.||++|||++|+++
T Consensus 232 ~~~--~~~~~~~~~~----~~~~~~~~~~~~~li~~~L~~dP~~Rps~~e~l~ 278 (285)
T 3is5_A 232 EVQ--QKATYKEPNY----AVECRPLTPQAVDLLKQMLTKDPERRPSAAQVLH 278 (285)
T ss_dssp HHH--HHHHHCCCCC----CC--CCCCHHHHHHHHHHTCSCTTTSCCHHHHHT
T ss_pred HHH--hhhccCCccc----ccccCcCCHHHHHHHHHHccCChhhCcCHHHHhc
Confidence 100 0000000000 0001113457789999999999999999999986
No 193
>2jii_A Serine/threonine-protein kinase VRK3 molecule: VA related kinase 3; transferase, pseudo kinase domain, vaccinia related kinase, ATP-binding; 2.00A {Homo sapiens}
Probab=100.00 E-value=3.8e-38 Score=341.29 Aligned_cols=271 Identities=13% Similarity=0.129 Sum_probs=205.9
Q ss_pred cCCccCceeccCcceEEEEEEECC--------CceEEEEEEeeccCCcchhHHHHHHHHHhhcCCCccce----------
Q 040925 531 GEFSSSNMIGQGSFGYVYKGTLGE--------DEMIVAVKVINLKYKGASRSFVAECEALRNIRHRNLIK---------- 592 (833)
Q Consensus 531 ~~y~~~~~lg~G~~g~Vy~~~~~~--------~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~---------- 592 (833)
++|++.+.||+|+||.||+|++.. .++.||||+++.. +.+.+|++++++++||||++
T Consensus 42 ~~y~~~~~lg~G~~g~Vy~~~~~~t~~~~~~~~~~~vavK~~~~~-----~~~~~E~~~l~~l~h~niv~~~~~~~~~~~ 116 (352)
T 2jii_A 42 RQWKLKSFQTRDNQGILYEAAPTSTLTCDSGPQKQKFSLKLDAKD-----GRLFNEQNFFQRAAKPLQVNKWKKLYSTPL 116 (352)
T ss_dssp CEEEEEEEEEEETTEEEEEEEECC-----------CEEEEEEETT-----STHHHHHHHHHHHCCHHHHHHHHHHTTCTT
T ss_pred CeEEEEEEecCCCCeEEEEEeecCCccccccccCceEEEEEeccc-----chHHHHHHHHHHhcccchhhhhhhhccCCc
Confidence 689999999999999999999986 3889999998633 46889999999999999998
Q ss_pred -----EeeEeecCCCCCCceEeEEEEecCCCChhhhhccCCCccccccCCHHHHHHHHHHHHHHHHHHhhcCCCCceeeC
Q 040925 593 -----IITICSSTDFKGTDFKAFVFEYMENGSLKDWLHQSDDQVEVCKLSLIQRVNIAIDVASAMEYLHHHCQPPMVHGD 667 (833)
Q Consensus 593 -----~~~~~~~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~gL~~LH~~~~~~ivH~D 667 (833)
+++++... ....++||||+ +|+|.+++...... .+++.+++.++.|++.||+|||+. +|+|||
T Consensus 117 ~~i~~~~~~~~~~----~~~~~lv~e~~-~~~L~~~l~~~~~~----~l~~~~~~~i~~qi~~~L~~LH~~---~ivH~D 184 (352)
T 2jii_A 117 LAIPTCMGFGVHQ----DKYRFLVLPSL-GRSLQSALDVSPKH----VLSERSVLQVACRLLDALEFLHEN---EYVHGN 184 (352)
T ss_dssp CSCCCCCEEEEET----TTEEEEEEECC-CEEHHHHHHHSGGG----CCCHHHHHHHHHHHHHHHHHHHHT---TCBCSC
T ss_pred cCccchhhccccC----CcEEEEEecCC-CcCHHHHHHhCCcC----CCCHHHHHHHHHHHHHHHHHHHhC---CccCCC
Confidence 45555431 35889999999 89999999875321 799999999999999999999999 999999
Q ss_pred CCCCCeeecCCC--cEEEcccccccccCcccccccccCCCccccccccccccCccccCCCCCCcccccccCCcCCCcccc
Q 040925 668 LKPSNVLLDHDM--VAHVCDFGLAKFLSDHQLDTAVKTPSSSIGLKGTVGYVAPEYGMGSEASMTGDIFTGRRPIDAVFN 745 (833)
Q Consensus 668 lkp~NIll~~~~--~~kL~DfG~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~s~~~~~~~~~~ 745 (833)
|||+||+++.++ .+||+|||+++........... .........||+.|+|||++.+..++.++||||
T Consensus 185 ikp~NIl~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~-~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~s---------- 253 (352)
T 2jii_A 185 VTAENIFVDPEDQSQVTLAGYGFAFRYCPSGKHVAY-VEGSRSPHEGDLEFISMDLHKGCGPSRRSDLQS---------- 253 (352)
T ss_dssp CCGGGEEEETTEEEEEEECCGGGCBCSSGGGCCCCC-CTTSSCTTCSCTTTCCHHHHTTCCCCHHHHHHH----------
T ss_pred CCHHHEEEcCCCCceEEEecCcceeeccCCCccccc-cccccccccCCccccCHHHHccCCCCchhhHHH----------
Confidence 999999999998 9999999999877654321111 111223457999999999999999999999999
Q ss_pred CCccHHHHHHHhCCCcccccccccchhhhc--cccchhhhhhhhchHHHHHHHHHHhhccCCCCCCCCCCHHHHHHHHHH
Q 040925 746 EGHSLHEFAKTALPEKVMEIVDPSLLMEVM--TNNSMIQEDKRVKTEECLNAIIRTGVLCSMESPFERMDMRDVVAKLCH 823 (833)
Q Consensus 746 ~g~~l~~~~~~~~p~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~ 823 (833)
+|+++++++++..|+............... ................+++.+.+++.+||..||++|||++++++.|++
T Consensus 254 lG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~L~~ 333 (352)
T 2jii_A 254 LGYCMLKWLYGFLPWTNCLPNTEDIMKQKQKFVDKPGPFVGPCGHWIRPSETLQKYLKVVMALTYEEKPPYAMLRNNLEA 333 (352)
T ss_dssp HHHHHHHHHHSCCTTGGGTTCHHHHHHHHHHHHHSCCCEECTTSCEECCCHHHHHHHHHHHTCCTTCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCcccCCcCHHHHHHHHHhccCChhhhhhhccccCCCcHHHHHHHHHHHhCChhhCCCHHHHHHHHHH
Confidence 888999999998887633211111100000 000000000000001235678999999999999999999999999999
Q ss_pred hhhhhh
Q 040925 824 TRETFL 829 (833)
Q Consensus 824 i~~~~~ 829 (833)
+.+...
T Consensus 334 ~~~~~~ 339 (352)
T 2jii_A 334 LLQDLR 339 (352)
T ss_dssp HHHHTT
T ss_pred HHHhcC
Confidence 987643
No 194
>2xir_A Vascular endothelial growth factor receptor 2; angiogenesis, nucleotide-binding, inhibitor, phosphorylation receptor, transferase, transmembrane; HET: 00J; 1.50A {Homo sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A* 3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A* 2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A* 3cpc_A* ...
Probab=100.00 E-value=3.3e-38 Score=336.87 Aligned_cols=279 Identities=20% Similarity=0.300 Sum_probs=214.4
Q ss_pred cchHHHHHHhcCCccCceeccCcceEEEEEEE-----CCCceEEEEEEeeccCCc-chhHHHHHHHHHhhc-CCCccceE
Q 040925 521 VSYAELSKATGEFSSSNMIGQGSFGYVYKGTL-----GEDEMIVAVKVINLKYKG-ASRSFVAECEALRNI-RHRNLIKI 593 (833)
Q Consensus 521 ~~~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~-----~~~~~~vavK~~~~~~~~-~~~~~~~E~~~l~~l-~h~niv~~ 593 (833)
+....+....++|++.+.||+|+||.||+|++ ..+++.||||+++..... ..+.+.+|+++++++ +||||+++
T Consensus 17 ~~~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~ 96 (316)
T 2xir_A 17 YDASKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNL 96 (316)
T ss_dssp CCHHHHBCCGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCE
T ss_pred ccccceecchhheeeeeEEcCCCceeEEEEEEecCCccccceEEEEEecccCCCcHHHHHHHHHHHHHHhcccCCCeeeE
Confidence 34455556678999999999999999999985 356789999999754332 345789999999999 69999999
Q ss_pred eeEeecCCCCCCceEeEEEEecCCCChhhhhccCCCccc----------cccCCHHHHHHHHHHHHHHHHHHhhcCCCCc
Q 040925 594 ITICSSTDFKGTDFKAFVFEYMENGSLKDWLHQSDDQVE----------VCKLSLIQRVNIAIDVASAMEYLHHHCQPPM 663 (833)
Q Consensus 594 ~~~~~~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~----------~~~l~~~~~~~i~~qi~~gL~~LH~~~~~~i 663 (833)
++++...+ ...++||||+++|+|.+++........ ...+++..++.++.|++.||.|||+. +|
T Consensus 97 ~~~~~~~~----~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~---~i 169 (316)
T 2xir_A 97 LGACTKPG----GPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLASR---KC 169 (316)
T ss_dssp EEEECCTT----SCCEEEEECCTTEEHHHHHHTCTTSEECC-------CTTCEEHHHHHHHHHHHHHHHHHHHHT---TC
T ss_pred EEEEecCC----CceEEEEEcCCCCcHHHHHHhcccccccccccchhhhccccCHHHHHHHHHHHHHHHHHHHhC---Cc
Confidence 99975433 458999999999999999987643100 11278999999999999999999999 99
Q ss_pred eeeCCCCCCeeecCCCcEEEcccccccccCcccccccccCCCccccccccccccCccccCCCCCCcccccccCCcCCCcc
Q 040925 664 VHGDLKPSNVLLDHDMVAHVCDFGLAKFLSDHQLDTAVKTPSSSIGLKGTVGYVAPEYGMGSEASMTGDIFTGRRPIDAV 743 (833)
Q Consensus 664 vH~Dlkp~NIll~~~~~~kL~DfG~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~s~~~~~~~~ 743 (833)
+||||||+||+++.++.+||+|||+++........ .......||+.|+|||++.+..++.++||||
T Consensus 170 ~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~------~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~s-------- 235 (316)
T 2xir_A 170 IHRDLAARNILLSEKNVVKICDFGLARDIYKDPDY------VRKGDARLPLKWMAPETIFDRVYTIQSDVWS-------- 235 (316)
T ss_dssp CCSCCSGGGEEECGGGCEEECCCGGGSCTTTCTTS------EEETTEEECGGGCCHHHHHHCCCCHHHHHHH--------
T ss_pred ccccCccceEEECCCCCEEECCCccccccccCccc------eeccCCCcceeecCchhhccccccchhHHHH--------
Confidence 99999999999999999999999999866432211 1112345889999999999889999999999
Q ss_pred ccCCccHHHHHH-HhCCCcccccccccchhhhccccchhhhhhhhchHHHHHHHHHHhhccCCCCCCCCCCHHHHHHHHH
Q 040925 744 FNEGHSLHEFAK-TALPEKVMEIVDPSLLMEVMTNNSMIQEDKRVKTEECLNAIIRTGVLCSMESPFERMDMRDVVAKLC 822 (833)
Q Consensus 744 ~~~g~~l~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~ 822 (833)
+|++++++++ +..|+..... +............ ...+..+++.+.+++.+||+.||++|||+.|+++.|+
T Consensus 236 --lG~il~~l~t~g~~p~~~~~~-~~~~~~~~~~~~~------~~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~~L~ 306 (316)
T 2xir_A 236 --FGVLLWEIFSLGASPYPGVKI-DEEFCRRLKEGTR------MRAPDYTTPEMYQTMLDCWHGEPSQRPTFSELVEHLG 306 (316)
T ss_dssp --HHHHHHHHHTTSCCSSTTCCC-SHHHHHHHHHTCC------CCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHH
T ss_pred --HHHHHHHHHhCCCCCCcccch-hHHHHHHhccCcc------CCCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHH
Confidence 7888888887 7777642221 1111111110000 0111224567889999999999999999999999999
Q ss_pred Hhhhhhh
Q 040925 823 HTRETFL 829 (833)
Q Consensus 823 ~i~~~~~ 829 (833)
.+.+...
T Consensus 307 ~~~~~~~ 313 (316)
T 2xir_A 307 NLLQANA 313 (316)
T ss_dssp HHHHHHC
T ss_pred HHHhhhc
Confidence 9987643
No 195
>2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A* 3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A* 3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A* 2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ...
Probab=100.00 E-value=1.2e-37 Score=326.98 Aligned_cols=248 Identities=19% Similarity=0.302 Sum_probs=203.3
Q ss_pred hcCCccCceeccCcceEEEEEEECCCceEEEEEEeeccC---CcchhHHHHHHHHHhhcCCCccceEeeEeecCCCCCCc
Q 040925 530 TGEFSSSNMIGQGSFGYVYKGTLGEDEMIVAVKVINLKY---KGASRSFVAECEALRNIRHRNLIKIITICSSTDFKGTD 606 (833)
Q Consensus 530 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~ 606 (833)
.++|++.+.||+|+||.||+|++..+++.||+|++.... ....+.+.+|++++++++||||+++++++....
T Consensus 13 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~----- 87 (284)
T 2vgo_A 13 IDDFDIGRPLGKGKFGNVYLAREKQNKFIMALKVLFKSQLEKEGVEHQLRREIEIQSHLRHPNILRMYNYFHDRK----- 87 (284)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSS-----
T ss_pred hhhceeeheecCCCCeEEEEEEEcCCCcEEEEEEEcccccchHHHHHHHHHHHHHHhcCCCCCEeeEEEEEEcCC-----
Confidence 467999999999999999999999999999999996431 223467899999999999999999999976554
Q ss_pred eEeEEEEecCCCChhhhhccCCCccccccCCHHHHHHHHHHHHHHHHHHhhcCCCCceeeCCCCCCeeecCCCcEEEccc
Q 040925 607 FKAFVFEYMENGSLKDWLHQSDDQVEVCKLSLIQRVNIAIDVASAMEYLHHHCQPPMVHGDLKPSNVLLDHDMVAHVCDF 686 (833)
Q Consensus 607 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~gL~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kL~Df 686 (833)
..++||||+++|+|.+++.... .+++..++.++.|++.||.|||+. +|+||||||+||+++.++.+||+||
T Consensus 88 ~~~lv~e~~~~~~L~~~l~~~~------~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~kl~Df 158 (284)
T 2vgo_A 88 RIYLMLEFAPRGELYKELQKHG------RFDEQRSATFMEELADALHYCHER---KVIHRDIKPENLLMGYKGELKIADF 158 (284)
T ss_dssp EEEEEECCCTTEEHHHHHHHHS------SCCHHHHHHHHHHHHHHHHHHHTT---TEECCCCSGGGEEECTTCCEEECCC
T ss_pred EEEEEEEeCCCCcHHHHHHhcC------CCCHHHHHHHHHHHHHHHHHHHHC---CceecCCCHHHEEEcCCCCEEEecc
Confidence 8999999999999999998654 689999999999999999999999 9999999999999999999999999
Q ss_pred ccccccCcccccccccCCCccccccccccccCccccCCCCCCcccccccCCcCCCccccCCccHHHHHHHhCCCcccccc
Q 040925 687 GLAKFLSDHQLDTAVKTPSSSIGLKGTVGYVAPEYGMGSEASMTGDIFTGRRPIDAVFNEGHSLHEFAKTALPEKVMEIV 766 (833)
Q Consensus 687 G~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~s~~~~~~~~~~~g~~l~~~~~~~~p~~~~~~~ 766 (833)
|++....... .....||+.|+|||++.+..++.++|||| .|+++++++++..|+......
T Consensus 159 g~~~~~~~~~----------~~~~~~~~~y~aPE~~~~~~~~~~~Di~s----------lG~il~~l~~g~~pf~~~~~~ 218 (284)
T 2vgo_A 159 GWSVHAPSLR----------RRTMCGTLDYLPPEMIEGKTHDEKVDLWC----------AGVLCYEFLVGMPPFDSPSHT 218 (284)
T ss_dssp TTCEECSSSC----------BCCCCSCGGGCCHHHHTTCCBCTTHHHHH----------HHHHHHHHHHSSCTTCCSSHH
T ss_pred cccccCcccc----------cccccCCCCcCCHHHhccCCCCcccchhh----------HHHHHHHHHHCCCCCCCCCHh
Confidence 9987554321 12346999999999999999999999999 888999999998887532211
Q ss_pred cccchhhhccccchhhhhhhhchHHHHHHHHHHhhccCCCCCCCCCCHHHHHHH
Q 040925 767 DPSLLMEVMTNNSMIQEDKRVKTEECLNAIIRTGVLCSMESPFERMDMRDVVAK 820 (833)
Q Consensus 767 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~ 820 (833)
+ .......... ..+..++..+.+++.+||..||++|||++|+++.
T Consensus 219 ~--~~~~~~~~~~-------~~~~~~~~~~~~li~~~l~~~p~~Rps~~~ll~h 263 (284)
T 2vgo_A 219 E--THRRIVNVDL-------KFPPFLSDGSKDLISKLLRYHPPQRLPLKGVMEH 263 (284)
T ss_dssp H--HHHHHHTTCC-------CCCTTSCHHHHHHHHHHSCSSGGGSCCHHHHHTC
T ss_pred H--HHHHHhcccc-------CCCCcCCHHHHHHHHHHhhcCHhhCCCHHHHhhC
Confidence 1 1111111110 1112345678899999999999999999999874
No 196
>1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A*
Probab=100.00 E-value=6.8e-38 Score=337.48 Aligned_cols=247 Identities=24% Similarity=0.323 Sum_probs=198.1
Q ss_pred cCCccCceeccCcceEEEEEEECCCceEEEEEEeeccCCc---chhHHHHHHHHHhhcCCCccceEeeEeecCCCCCCce
Q 040925 531 GEFSSSNMIGQGSFGYVYKGTLGEDEMIVAVKVINLKYKG---ASRSFVAECEALRNIRHRNLIKIITICSSTDFKGTDF 607 (833)
Q Consensus 531 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~---~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~ 607 (833)
+.|++.+.||+|+||.||+|++..+++.||||++...... ..+.+.+|++++++++||||+++++++...+ .
T Consensus 54 ~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~-----~ 128 (348)
T 1u5q_A 54 KLFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNTIQYRGCYLREH-----T 128 (348)
T ss_dssp HHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEESCSSCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETT-----E
T ss_pred hheeeeeEEccCCCEEEEEEEEccCCeEEEEEEEccccccchHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECC-----e
Confidence 4589999999999999999999889999999999754322 2357889999999999999999999986654 8
Q ss_pred EeEEEEecCCCChhhhhccCCCccccccCCHHHHHHHHHHHHHHHHHHhhcCCCCceeeCCCCCCeeecCCCcEEEcccc
Q 040925 608 KAFVFEYMENGSLKDWLHQSDDQVEVCKLSLIQRVNIAIDVASAMEYLHHHCQPPMVHGDLKPSNVLLDHDMVAHVCDFG 687 (833)
Q Consensus 608 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~gL~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kL~DfG 687 (833)
.++||||++ |++.+++..... .+++.++..++.|++.||+|||+. +|+||||||+||+++.++.+||+|||
T Consensus 129 ~~lv~e~~~-g~l~~~l~~~~~-----~l~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dlkp~NIll~~~~~~kL~DfG 199 (348)
T 1u5q_A 129 AWLVMEYCL-GSASDLLEVHKK-----PLQEVEIAAVTHGALQGLAYLHSH---NMIHRDVKAGNILLSEPGLVKLGDFG 199 (348)
T ss_dssp EEEEEECCS-EEHHHHHHHHTS-----CCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCSGGGEEEETTTEEEECCCT
T ss_pred EEEEEecCC-CCHHHHHHHhcC-----CCCHHHHHHHHHHHHHHHHHHHhC---CeeeCCCCHHHEEECCCCCEEEeecc
Confidence 999999997 688888864332 689999999999999999999999 99999999999999999999999999
Q ss_pred cccccCcccccccccCCCccccccccccccCccccC---CCCCCcccccccCCcCCCccccCCccHHHHHHHhCCCcccc
Q 040925 688 LAKFLSDHQLDTAVKTPSSSIGLKGTVGYVAPEYGM---GSEASMTGDIFTGRRPIDAVFNEGHSLHEFAKTALPEKVME 764 (833)
Q Consensus 688 ~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~---~~~~~~~~Di~s~~~~~~~~~~~g~~l~~~~~~~~p~~~~~ 764 (833)
+++..... ....||+.|+|||++. +..++.++|||| +|+++++++++..|+....
T Consensus 200 ~a~~~~~~------------~~~~gt~~y~aPE~~~~~~~~~~~~~~Diws----------lG~il~ell~g~~p~~~~~ 257 (348)
T 1u5q_A 200 SASIMAPA------------NSFVGTPYWMAPEVILAMDEGQYDGKVDVWS----------LGITCIELAERKPPLFNMN 257 (348)
T ss_dssp TCBSSSSB------------CCCCSCGGGCCHHHHHTTSSCCBCTHHHHHH----------HHHHHHHHHHSSCTTTTSC
T ss_pred CceecCCC------------CcccCCcceeCHhhhccccCCCCCcHHHHHH----------HHHHHHHHHhCCCCCCCCC
Confidence 99765432 1246999999999874 567899999999 8889999999988865322
Q ss_pred cccccchhhhccccchhhhhhhhchHHHHHHHHHHhhccCCCCCCCCCCHHHHHHH
Q 040925 765 IVDPSLLMEVMTNNSMIQEDKRVKTEECLNAIIRTGVLCSMESPFERMDMRDVVAK 820 (833)
Q Consensus 765 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~ 820 (833)
..+ .......... .......+++.+.+++.+||+.||++|||++++++.
T Consensus 258 ~~~--~~~~~~~~~~-----~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~~ll~h 306 (348)
T 1u5q_A 258 AMS--ALYHIAQNES-----PALQSGHWSEYFRNFVDSCLQKIPQDRPTSEVLLKH 306 (348)
T ss_dssp HHH--HHHHHHHSCC-----CCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHTTC
T ss_pred hHH--HHHHHHhcCC-----CCCCCCCCCHHHHHHHHHHcccChhhCcCHHHHhhC
Confidence 111 1111111110 011112345678899999999999999999999864
No 197
>1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=9.5e-38 Score=335.10 Aligned_cols=262 Identities=26% Similarity=0.411 Sum_probs=198.9
Q ss_pred cCCccCceeccCcceEEEEEEECCC----ceEEEEEEeeccCC-cchhHHHHHHHHHhhcCCCccceEeeEeecCCCCCC
Q 040925 531 GEFSSSNMIGQGSFGYVYKGTLGED----EMIVAVKVINLKYK-GASRSFVAECEALRNIRHRNLIKIITICSSTDFKGT 605 (833)
Q Consensus 531 ~~y~~~~~lg~G~~g~Vy~~~~~~~----~~~vavK~~~~~~~-~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~ 605 (833)
.+|++.+.||+|+||.||+|++..+ +..||||+++.... .....+.+|++++++++||||+++++++....
T Consensus 44 ~~~~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~---- 119 (333)
T 1mqb_A 44 SCVTRQKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYTEKQRVDFLGEAGIMGQFSHHNIIRLEGVISKYK---- 119 (333)
T ss_dssp TTEEEEEEEEECSSSEEEEEEEEC---CCEEEEEEEEECTTCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECSSS----
T ss_pred HHhhcccEEecCCCeEEEEEEEecCCCCccccEEEEEcCCCCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEecCC----
Confidence 4688889999999999999988644 35699999975432 23457889999999999999999999975544
Q ss_pred ceEeEEEEecCCCChhhhhccCCCccccccCCHHHHHHHHHHHHHHHHHHhhcCCCCceeeCCCCCCeeecCCCcEEEcc
Q 040925 606 DFKAFVFEYMENGSLKDWLHQSDDQVEVCKLSLIQRVNIAIDVASAMEYLHHHCQPPMVHGDLKPSNVLLDHDMVAHVCD 685 (833)
Q Consensus 606 ~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~gL~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kL~D 685 (833)
..++||||+++|+|.+++..... .+++.+++.++.|++.||+|||+. +|+||||||+||+++.++.+||+|
T Consensus 120 -~~~lv~e~~~~~~L~~~l~~~~~-----~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dikp~NIl~~~~~~~kl~D 190 (333)
T 1mqb_A 120 -PMMIITEYMENGALDKFLREKDG-----EFSVLQLVGMLRGIAAGMKYLANM---NYVHRDLAARNILVNSNLVCKVSD 190 (333)
T ss_dssp -SEEEEEECCTTEEHHHHHHHTTT-----CSCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTCCEEECC
T ss_pred -CcEEEEeCCCCCcHHHHHHhCCC-----CCCHHHHHHHHHHHHHHHHHHHhC---CeeCCCCChheEEECCCCcEEECC
Confidence 78999999999999999976432 689999999999999999999999 999999999999999999999999
Q ss_pred cccccccCcccccccccCCCccccccccccccCccccCCCCCCcccccccCCcCCCccccCCccHHHHHH-HhCCCcccc
Q 040925 686 FGLAKFLSDHQLDTAVKTPSSSIGLKGTVGYVAPEYGMGSEASMTGDIFTGRRPIDAVFNEGHSLHEFAK-TALPEKVME 764 (833)
Q Consensus 686 fG~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~s~~~~~~~~~~~g~~l~~~~~-~~~p~~~~~ 764 (833)
||+++......... .......+|+.|+|||++.+..++.++|||| +|++++++++ +..|+....
T Consensus 191 fg~~~~~~~~~~~~-----~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~s----------lG~il~ellt~g~~pf~~~~ 255 (333)
T 1mqb_A 191 FGLSRVLEDDPEAT-----YTTSGGKIPIRWTAPEAISYRKFTSASDVWS----------FGIVMWEVMTYGERPYWELS 255 (333)
T ss_dssp CCC----------------------CCCGGGSCHHHHHSCCCCHHHHHHH----------HHHHHHHHHTTSCCTTTTCC
T ss_pred CCcchhhccccccc-----cccCCCCccccccCchhcccCCCCchhhhHH----------HHHHHHHHHcCCCCCcccCC
Confidence 99998765432111 1111234788999999999889999999999 7778888887 777764221
Q ss_pred cccccchhhhccccchhhhhhhhchHHHHHHHHHHhhccCCCCCCCCCCHHHHHHHHHHhhhhh
Q 040925 765 IVDPSLLMEVMTNNSMIQEDKRVKTEECLNAIIRTGVLCSMESPFERMDMRDVVAKLCHTRETF 828 (833)
Q Consensus 765 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~i~~~~ 828 (833)
. ........... ....+..++..+.+++.+||+.||++|||+.|+++.|+++.+..
T Consensus 256 ~--~~~~~~~~~~~------~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~L~~~~~~~ 311 (333)
T 1mqb_A 256 N--HEVMKAINDGF------RLPTPMDCPSAIYQLMMQCWQQERARRPKFADIVSILDKLIRAP 311 (333)
T ss_dssp H--HHHHHHHHTTC------CCCCCTTCBHHHHHHHHHHTCSSTTTSCCHHHHHHHHHHHHHSG
T ss_pred H--HHHHHHHHCCC------cCCCcccCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHhcc
Confidence 1 11111111110 01112234667899999999999999999999999999987653
No 198
>3gbz_A Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; 1.85A {Giardia lamblia} PDB: 3gc0_A*
Probab=100.00 E-value=5.5e-38 Score=336.52 Aligned_cols=264 Identities=22% Similarity=0.292 Sum_probs=191.5
Q ss_pred hHHHHHHhcCCccCceeccCcceEEEEEEECCCceEEEEEEeeccCC--cchhHHHHHHHHHhhcCCCccceEeeEeecC
Q 040925 523 YAELSKATGEFSSSNMIGQGSFGYVYKGTLGEDEMIVAVKVINLKYK--GASRSFVAECEALRNIRHRNLIKIITICSST 600 (833)
Q Consensus 523 ~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~--~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~ 600 (833)
........++|++.+.||+|+||.||+|++..+++.||||+++.... ...+.+.+|++++++++||||+++++++...
T Consensus 26 ~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~ 105 (329)
T 3gbz_A 26 AAPSATSIDRYRRITKLGEGTYGEVYKAIDTVTNETVAIKRIRLEHEEEGVPGTAIREVSLLKELQHRNIIELKSVIHHN 105 (329)
T ss_dssp ------CGGGEEEEEEEEECSSSEEEEEEETTTTEEEEEEECCCCC--------CHHHHHHGGGCCCTTBCCEEEEEEET
T ss_pred cCCcccchhhEEEEEEEEecCCeEEEEEEECCCCceEEEEEEcccccccccchhHHHHHHHHHHcCCCCcceEEEEEecC
Confidence 33445567799999999999999999999999999999999975432 2245678999999999999999999997665
Q ss_pred CCCCCceEeEEEEecCCCChhhhhccCCCccccccCCHHHHHHHHHHHHHHHHHHhhcCCCCceeeCCCCCCeeec----
Q 040925 601 DFKGTDFKAFVFEYMENGSLKDWLHQSDDQVEVCKLSLIQRVNIAIDVASAMEYLHHHCQPPMVHGDLKPSNVLLD---- 676 (833)
Q Consensus 601 ~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~gL~~LH~~~~~~ivH~Dlkp~NIll~---- 676 (833)
. ..++||||++ |+|.+++.... .+++..++.++.|++.||+|||+. +|+||||||+||+++
T Consensus 106 ~-----~~~lv~e~~~-~~L~~~~~~~~------~~~~~~~~~i~~ql~~~l~~LH~~---~ivH~Dlkp~NIll~~~~~ 170 (329)
T 3gbz_A 106 H-----RLHLIFEYAE-NDLKKYMDKNP------DVSMRVIKSFLYQLINGVNFCHSR---RCLHRDLKPQNLLLSVSDA 170 (329)
T ss_dssp T-----EEEEEEECCS-EEHHHHHHHCT------TCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEEEC---
T ss_pred C-----EEEEEEecCC-CCHHHHHhhcC------CCCHHHHHHHHHHHHHHHHHHHhC---CEECCCCCHHHEEEecCCC
Confidence 5 8999999998 59999998765 689999999999999999999999 999999999999994
Q ss_pred -CCCcEEEcccccccccCcccccccccCCCccccccccccccCccccCCC-CCCcccccccCCcCCCccccCCccHHHHH
Q 040925 677 -HDMVAHVCDFGLAKFLSDHQLDTAVKTPSSSIGLKGTVGYVAPEYGMGS-EASMTGDIFTGRRPIDAVFNEGHSLHEFA 754 (833)
Q Consensus 677 -~~~~~kL~DfG~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~Di~s~~~~~~~~~~~g~~l~~~~ 754 (833)
.++.+||+|||+++....... ......||+.|+|||++.+. .++.++|||| .|+++++++
T Consensus 171 ~~~~~~kl~Dfg~a~~~~~~~~--------~~~~~~~t~~y~aPE~~~~~~~~~~~~Diws----------lG~il~ell 232 (329)
T 3gbz_A 171 SETPVLKIGDFGLARAFGIPIR--------QFTHEIITLWYRPPEILLGSRHYSTSVDIWS----------IACIWAEML 232 (329)
T ss_dssp --CCEEEECCTTHHHHHC-------------------CCTTCCHHHHTTCCCCCTHHHHHH----------HHHHHHHHH
T ss_pred CccceEEECcCCCccccCCccc--------ccCCCcCCccccCHHHhcCCCCCCcHHHHHH----------HHHHHHHHH
Confidence 555699999999986543211 11234689999999998874 4899999999 777888888
Q ss_pred HHhCCCcccccccccchh-hh------------c-----ccc---chhhhhhhhchHHHHHHHHHHhhccCCCCCCCCCC
Q 040925 755 KTALPEKVMEIVDPSLLM-EV------------M-----TNN---SMIQEDKRVKTEECLNAIIRTGVLCSMESPFERMD 813 (833)
Q Consensus 755 ~~~~p~~~~~~~~~~~~~-~~------------~-----~~~---~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt 813 (833)
++..|+......+..... .. . ... .............+++.+.+++.+||+.||++|||
T Consensus 233 ~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t 312 (329)
T 3gbz_A 233 MKTPLFPGDSEIDQLFKIFEVLGLPDDTTWPGVTALPDWKQSFPKFRGKTLKRVLGALLDDEGLDLLTAMLEMDPVKRIS 312 (329)
T ss_dssp HSSCSSCCSSHHHHHHHHHHHHCCCCTTTSTTGGGSTTCCTTCCCCCCCCHHHHHGGGSCHHHHHHHHHHTCSSGGGSCC
T ss_pred HCCCCcCCCCHHHHHHHHHHHhCCCchhhhhhhhhhhhhhhhhhhhccccHhhhcccccCHHHHHHHHHHccCChhhCCC
Confidence 888776422111000000 00 0 000 00000001111124567889999999999999999
Q ss_pred HHHHHH
Q 040925 814 MRDVVA 819 (833)
Q Consensus 814 ~~eil~ 819 (833)
++|+++
T Consensus 313 ~~e~l~ 318 (329)
T 3gbz_A 313 AKNALE 318 (329)
T ss_dssp HHHHHT
T ss_pred HHHHhC
Confidence 999986
No 199
>1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase domain, hormone-growth factor complex; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A* 1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A* 3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A* 1gag_A* 1irk_A 3bu3_A* ...
Probab=100.00 E-value=3.4e-38 Score=337.60 Aligned_cols=274 Identities=22% Similarity=0.338 Sum_probs=211.8
Q ss_pred cchHHHHHHhcCCccCceeccCcceEEEEEEEC-----CCceEEEEEEeeccCC-cchhHHHHHHHHHhhcCCCccceEe
Q 040925 521 VSYAELSKATGEFSSSNMIGQGSFGYVYKGTLG-----EDEMIVAVKVINLKYK-GASRSFVAECEALRNIRHRNLIKII 594 (833)
Q Consensus 521 ~~~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~-----~~~~~vavK~~~~~~~-~~~~~~~~E~~~l~~l~h~niv~~~ 594 (833)
+..+++....++|++.+.||+|+||.||+|++. .+++.||||.+..... .....+.+|++++++++||||++++
T Consensus 15 ~~~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~ 94 (322)
T 1p4o_A 15 YVPDEWEVAREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEFNCHHVVRLL 94 (322)
T ss_dssp CCCCTTBCCGGGEEEEEEEEECSSSEEEEEEEEEEETTEEEEEEEEEECCTTSCHHHHHHHHHHHHHGGGCCCTTBCCEE
T ss_pred cChhhhcchhhheeeeeEeccCCceEEEeeeecCccCCCCceEEEEEecccccCHHHHHHHHHHHHHHHhcCCCCEeeeE
Confidence 344555666789999999999999999999876 3578899999974432 2345688999999999999999999
Q ss_pred eEeecCCCCCCceEeEEEEecCCCChhhhhccCCCc----cccccCCHHHHHHHHHHHHHHHHHHhhcCCCCceeeCCCC
Q 040925 595 TICSSTDFKGTDFKAFVFEYMENGSLKDWLHQSDDQ----VEVCKLSLIQRVNIAIDVASAMEYLHHHCQPPMVHGDLKP 670 (833)
Q Consensus 595 ~~~~~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~----~~~~~l~~~~~~~i~~qi~~gL~~LH~~~~~~ivH~Dlkp 670 (833)
+++.... ..++||||+++|+|.+++...... .....+++..++.++.|++.||+|||+. +|+||||||
T Consensus 95 ~~~~~~~-----~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~dikp 166 (322)
T 1p4o_A 95 GVVSQGQ-----PTLVIMELMTRGDLKSYLRSLRPAMANNPVLAPPSLSKMIQMAGEIADGMAYLNAN---KFVHRDLAA 166 (322)
T ss_dssp EEECSSS-----SCEEEEECCTTCBHHHHHHHHHHHHHHCTTCCCCCHHHHHHHHHHHHHHHHHHHHT---TCBCSCCSG
T ss_pred EEEccCC-----ccEEEEEeCCCCcHHHHHHHhchhhccCCCCCCcCHHHHHHHHHHHHHHHHHHHHC---CCccCCCcc
Confidence 9975544 789999999999999999764211 0012568999999999999999999999 999999999
Q ss_pred CCeeecCCCcEEEcccccccccCcccccccccCCCccccccccccccCccccCCCCCCcccccccCCcCCCccccCCccH
Q 040925 671 SNVLLDHDMVAHVCDFGLAKFLSDHQLDTAVKTPSSSIGLKGTVGYVAPEYGMGSEASMTGDIFTGRRPIDAVFNEGHSL 750 (833)
Q Consensus 671 ~NIll~~~~~~kL~DfG~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~s~~~~~~~~~~~g~~l 750 (833)
+||+++.++.+||+|||+++......... ......||+.|+|||++.+..++.++|||| .|+++
T Consensus 167 ~NIli~~~~~~kl~Dfg~~~~~~~~~~~~------~~~~~~~~~~y~aPE~~~~~~~~~~~Di~s----------lG~il 230 (322)
T 1p4o_A 167 RNCMVAEDFTVKIGDFGMTRDIYETDYYR------KGGKGLLPVRWMSPESLKDGVFTTYSDVWS----------FGVVL 230 (322)
T ss_dssp GGEEECTTCCEEECCTTCCCGGGGGGCEE------GGGSSEECGGGCCHHHHHHCCCCHHHHHHH----------HHHHH
T ss_pred ceEEEcCCCeEEECcCccccccccccccc------cccCCCCCCCccChhhhccCCCCchhhHHH----------HHHHH
Confidence 99999999999999999998664432211 111235789999999998889999999999 78888
Q ss_pred HHHHH-HhCCCcccccccccchhhhccccchhhhhhhhchHHHHHHHHHHhhccCCCCCCCCCCHHHHHHHHHHhhh
Q 040925 751 HEFAK-TALPEKVMEIVDPSLLMEVMTNNSMIQEDKRVKTEECLNAIIRTGVLCSMESPFERMDMRDVVAKLCHTRE 826 (833)
Q Consensus 751 ~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~i~~ 826 (833)
+++++ +..|+..... ............ ...+..++..+.+++.+||..||++|||+.|+++.|+++.+
T Consensus 231 ~el~~~g~~p~~~~~~--~~~~~~~~~~~~------~~~~~~~~~~l~~li~~~l~~dp~~Rps~~e~l~~L~~~~~ 299 (322)
T 1p4o_A 231 WEIATLAEQPYQGLSN--EQVLRFVMEGGL------LDKPDNCPDMLFELMRMCWQYNPKMRPSFLEIISSIKEEME 299 (322)
T ss_dssp HHHHHTSCCTTTTSCH--HHHHHHHHTTCC------CCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHGGGSC
T ss_pred HHHHhcCCCccccCCH--HHHHHHHHcCCc------CCCCCCCCHHHHHHHHHHcCCCcccCcCHHHHHHHHHHhhc
Confidence 88888 6666642211 111111111110 01123346678999999999999999999999999988754
No 200
>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} PDB: 3fpq_A
Probab=100.00 E-value=2.3e-37 Score=325.84 Aligned_cols=252 Identities=22% Similarity=0.316 Sum_probs=199.4
Q ss_pred CCccCceeccCcceEEEEEEECCCceEEEEEEeeccC--CcchhHHHHHHHHHhhcCCCccceEeeEeecCCCCCCceEe
Q 040925 532 EFSSSNMIGQGSFGYVYKGTLGEDEMIVAVKVINLKY--KGASRSFVAECEALRNIRHRNLIKIITICSSTDFKGTDFKA 609 (833)
Q Consensus 532 ~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~~ 609 (833)
.|++.+.||+|+||.||+|.+..++..||+|++.... ....+.+.+|+.++++++||||+++++++.... .+....+
T Consensus 27 ~~~~~~~lg~G~~g~Vy~~~~~~~~~~va~k~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~-~~~~~~~ 105 (290)
T 1t4h_A 27 FLKFDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYDSWESTV-KGKKCIV 105 (290)
T ss_dssp EEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEES-SSCEEEE
T ss_pred eEEeeeeccCCCCeEEEEeEecCCceEEEEEEecchhhCHHHHHHHHHHHHHHHhCCCCCeeeeeeeecccc-CCCceEE
Confidence 4788889999999999999999999999999997542 233467899999999999999999999876542 3345789
Q ss_pred EEEEecCCCChhhhhccCCCccccccCCHHHHHHHHHHHHHHHHHHhhcCCCC--ceeeCCCCCCeeec-CCCcEEEccc
Q 040925 610 FVFEYMENGSLKDWLHQSDDQVEVCKLSLIQRVNIAIDVASAMEYLHHHCQPP--MVHGDLKPSNVLLD-HDMVAHVCDF 686 (833)
Q Consensus 610 lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~gL~~LH~~~~~~--ivH~Dlkp~NIll~-~~~~~kL~Df 686 (833)
+||||+++|+|.+++.... .+++..++.++.|++.||+|||+. + |+||||||+||+++ .++.+||+||
T Consensus 106 lv~e~~~~~~L~~~l~~~~------~~~~~~~~~~~~qi~~~l~~lH~~---~~~i~H~dikp~Nil~~~~~~~~kl~Df 176 (290)
T 1t4h_A 106 LVTELMTSGTLKTYLKRFK------VMKIKVLRSWCRQILKGLQFLHTR---TPPIIHRDLKCDNIFITGPTGSVKIGDL 176 (290)
T ss_dssp EEEECCCSCBHHHHHHHHS------SCCHHHHHHHHHHHHHHHHHHHTS---SSCCCCSCCCGGGEEESSTTSCEEECCT
T ss_pred EEEEecCCCCHHHHHHHcc------CCCHHHHHHHHHHHHHHHHHHHcC---CCCEEECCCCHHHEEEECCCCCEEEeeC
Confidence 9999999999999997644 689999999999999999999999 8 99999999999997 7899999999
Q ss_pred ccccccCcccccccccCCCccccccccccccCccccCCCCCCcccccccCCcCCCccccCCccHHHHHHHhCCCcccccc
Q 040925 687 GLAKFLSDHQLDTAVKTPSSSIGLKGTVGYVAPEYGMGSEASMTGDIFTGRRPIDAVFNEGHSLHEFAKTALPEKVMEIV 766 (833)
Q Consensus 687 G~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~s~~~~~~~~~~~g~~l~~~~~~~~p~~~~~~~ 766 (833)
|++....... .....||+.|+|||++.+ .++.++|||| .|+++++++++..|+......
T Consensus 177 g~~~~~~~~~----------~~~~~~t~~y~aPE~~~~-~~~~~~Di~s----------lG~~l~~l~~g~~pf~~~~~~ 235 (290)
T 1t4h_A 177 GLATLKRASF----------AKAVIGTPEFMAPEMYEE-KYDESVDVYA----------FGMCMLEMATSEYPYSECQNA 235 (290)
T ss_dssp TGGGGCCTTS----------BEESCSSCCCCCGGGGGT-CCCTHHHHHH----------HHHHHHHHHHSSCTTTTCSSH
T ss_pred CCcccccccc----------cccccCCcCcCCHHHHhc-cCCCcchHHH----------HHHHHHHHHhCCCCCCCcCcH
Confidence 9997543321 123469999999998764 5899999999 888999999998887532111
Q ss_pred cccchhhhccccchhhhhhhhchHHHHHHHHHHhhccCCCCCCCCCCHHHHHHH
Q 040925 767 DPSLLMEVMTNNSMIQEDKRVKTEECLNAIIRTGVLCSMESPFERMDMRDVVAK 820 (833)
Q Consensus 767 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~ 820 (833)
. ........... ........++.+.+++.+||..||++|||++|+++.
T Consensus 236 ~--~~~~~~~~~~~----~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~h 283 (290)
T 1t4h_A 236 A--QIYRRVTSGVK----PASFDKVAIPEVKEIIEGCIRQNKDERYSIKDLLNH 283 (290)
T ss_dssp H--HHHHHHTTTCC----CGGGGGCCCHHHHHHHHHHSCSSGGGSCCHHHHHTS
T ss_pred H--HHHHHHhccCC----ccccCCCCCHHHHHHHHHHccCChhhCCCHHHHhhC
Confidence 1 11111111100 011112234568899999999999999999999863
No 201
>2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A*
Probab=100.00 E-value=4.6e-38 Score=338.26 Aligned_cols=275 Identities=19% Similarity=0.262 Sum_probs=209.7
Q ss_pred HHHHhcCCccCceeccCcceEEEEEEECCCce-----EEEEEEeeccCC-cchhHHHHHHHHHhhc-CCCccceEeeEee
Q 040925 526 LSKATGEFSSSNMIGQGSFGYVYKGTLGEDEM-----IVAVKVINLKYK-GASRSFVAECEALRNI-RHRNLIKIITICS 598 (833)
Q Consensus 526 ~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~-----~vavK~~~~~~~-~~~~~~~~E~~~l~~l-~h~niv~~~~~~~ 598 (833)
+....++|++.+.||+|+||.||+|.+..+++ .||+|.++.... ...+.+.+|+++++++ +||||+++++++.
T Consensus 41 ~~~~~~~~~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~ 120 (333)
T 2i1m_A 41 WEFPRNNLQFGKTLGAGAFGKVVEATAFGLGKEDAVLKVAVKMLKSTAHADEKEALMSELKIMSHLGQHENIVNLLGACT 120 (333)
T ss_dssp GBCCTTSEEEEEEEEECSSEEEEEEEETTCSSSCCCCEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEEC
T ss_pred ccCCHHHceeeeEeccCCCcceEEEEecCCCcccchhHHHHHhcccccChHHHHHHHHHHHHHHhhcCCCCeeeEEEEEe
Confidence 44456789999999999999999999876554 799999975432 2346789999999999 8999999999976
Q ss_pred cCCCCCCceEeEEEEecCCCChhhhhccCCCc--------cccccCCHHHHHHHHHHHHHHHHHHhhcCCCCceeeCCCC
Q 040925 599 STDFKGTDFKAFVFEYMENGSLKDWLHQSDDQ--------VEVCKLSLIQRVNIAIDVASAMEYLHHHCQPPMVHGDLKP 670 (833)
Q Consensus 599 ~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~--------~~~~~l~~~~~~~i~~qi~~gL~~LH~~~~~~ivH~Dlkp 670 (833)
..+ ..++||||+++|+|.+++...... .....+++..++.++.|++.||+|||+. +|+||||||
T Consensus 121 ~~~-----~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~Dlkp 192 (333)
T 2i1m_A 121 HGG-----PVLVITEYCCYGDLLNFLRRKSRVLETDPAFAIANSTASTRDLLHFSSQVAQGMAFLASK---NCIHRDVAA 192 (333)
T ss_dssp SSS-----SCEEEEECCTTEEHHHHHHHHHHHHSCC-------CCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSG
T ss_pred cCC-----ceEEEEecCCCCcHHHHHHHhcccccccccccccccccCHHHHHHHHHHHHHHHHHHhcC---CcccCCccc
Confidence 554 789999999999999999754210 0012579999999999999999999999 999999999
Q ss_pred CCeeecCCCcEEEcccccccccCcccccccccCCCccccccccccccCccccCCCCCCcccccccCCcCCCccccCCccH
Q 040925 671 SNVLLDHDMVAHVCDFGLAKFLSDHQLDTAVKTPSSSIGLKGTVGYVAPEYGMGSEASMTGDIFTGRRPIDAVFNEGHSL 750 (833)
Q Consensus 671 ~NIll~~~~~~kL~DfG~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~s~~~~~~~~~~~g~~l 750 (833)
+||+++.++.+||+|||+++......... ......||+.|+|||++.+..++.++|||| +|+++
T Consensus 193 ~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~------~~~~~~~~~~y~aPE~~~~~~~~~~~Di~s----------lG~il 256 (333)
T 2i1m_A 193 RNVLLTNGHVAKIGDFGLARDIMNDSNYI------VKGNARLPVKWMAPESIFDCVYTVQSDVWS----------YGILL 256 (333)
T ss_dssp GGCEEEGGGEEEBCCCGGGCCGGGCTTSE------ECSSCEECGGGSCHHHHHHCCCCHHHHHHH----------HHHHH
T ss_pred ceEEECCCCeEEECcccccccccccccee------ecCCCCCCccccCHHHhccCCCChHHHHHH----------HHHHH
Confidence 99999999999999999998654432111 112245788999999998889999999999 67777
Q ss_pred HHHHH-HhCCCcccccccccchhhhccccchhhhhhhhchHHHHHHHHHHhhccCCCCCCCCCCHHHHHHHHHHhhhhhh
Q 040925 751 HEFAK-TALPEKVMEIVDPSLLMEVMTNNSMIQEDKRVKTEECLNAIIRTGVLCSMESPFERMDMRDVVAKLCHTRETFL 829 (833)
Q Consensus 751 ~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~i~~~~~ 829 (833)
+++++ +..|+..... ............ ....+..+++.+.+++.+||+.||++|||++|+++.|+++.+...
T Consensus 257 ~el~t~g~~p~~~~~~--~~~~~~~~~~~~-----~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~L~~~~~~~~ 329 (333)
T 2i1m_A 257 WEIFSLGLNPYPGILV--NSKFYKLVKDGY-----QMAQPAFAPKNIYSIMQACWALEPTHRPTFQQICSFLQEQAQEDR 329 (333)
T ss_dssp HHHTTTSCCSSTTCCS--SHHHHHHHHHTC-----CCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCCCCcccch--hHHHHHHHhcCC-----CCCCCCCCCHHHHHHHHHHhccChhhCcCHHHHHHHHHHHHHhhh
Confidence 77776 6556542111 111011111000 001112235678899999999999999999999999999987665
Q ss_pred cC
Q 040925 830 GR 831 (833)
Q Consensus 830 ~~ 831 (833)
..
T Consensus 330 ~~ 331 (333)
T 2i1m_A 330 RE 331 (333)
T ss_dssp HH
T ss_pred cc
Confidence 44
No 202
>2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1, selectivity residues, POLO-like K structure based drug design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A* 3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A* 3db6_A* 3dbe_A* 3dbf_A*
Probab=100.00 E-value=1.1e-37 Score=329.06 Aligned_cols=250 Identities=18% Similarity=0.252 Sum_probs=204.0
Q ss_pred hcCCccCceeccCcceEEEEEEECCCceEEEEEEeeccC---CcchhHHHHHHHHHhhcCCCccceEeeEeecCCCCCCc
Q 040925 530 TGEFSSSNMIGQGSFGYVYKGTLGEDEMIVAVKVINLKY---KGASRSFVAECEALRNIRHRNLIKIITICSSTDFKGTD 606 (833)
Q Consensus 530 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~ 606 (833)
.++|.+.+.||+|+||.||+|++..+++.||+|++.... ....+.+.+|+.++++++||||+++++++...+
T Consensus 14 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~----- 88 (294)
T 2rku_A 14 RRRYVRGRFLGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQHVVGFHGFFEDND----- 88 (294)
T ss_dssp TEEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEECSS-----
T ss_pred ccceEEEEEEeecCCEEEEEEEECCCCceEEEEEechhhccCHHHHHHHHHHHHHHHhCCCCCEeeeeeeeccCC-----
Confidence 467999999999999999999999999999999987542 223467889999999999999999999976554
Q ss_pred eEeEEEEecCCCChhhhhccCCCccccccCCHHHHHHHHHHHHHHHHHHhhcCCCCceeeCCCCCCeeecCCCcEEEccc
Q 040925 607 FKAFVFEYMENGSLKDWLHQSDDQVEVCKLSLIQRVNIAIDVASAMEYLHHHCQPPMVHGDLKPSNVLLDHDMVAHVCDF 686 (833)
Q Consensus 607 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~gL~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kL~Df 686 (833)
..++||||+++++|.+++.... .+++.+++.++.|++.||+|||+. +|+||||||+||+++.++.+||+||
T Consensus 89 ~~~lv~e~~~~~~L~~~~~~~~------~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~kl~df 159 (294)
T 2rku_A 89 FVFVVLELCRRRSLLELHKRRK------ALTEPEARYYLRQIVLGCQYLHRN---RVIHRDLKLGNLFLNEDLEVKIGDF 159 (294)
T ss_dssp EEEEEEECCTTCBHHHHHHHHC------SCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTCCEEECCC
T ss_pred EEEEEEecCCCCCHHHHHHhcC------CCCHHHHHHHHHHHHHHHHHHHHC---CccccCCChHhEEEcCCCCEEEEec
Confidence 8999999999999999987643 689999999999999999999999 9999999999999999999999999
Q ss_pred ccccccCcccccccccCCCccccccccccccCccccCCCCCCcccccccCCcCCCccccCCccHHHHHHHhCCCcccccc
Q 040925 687 GLAKFLSDHQLDTAVKTPSSSIGLKGTVGYVAPEYGMGSEASMTGDIFTGRRPIDAVFNEGHSLHEFAKTALPEKVMEIV 766 (833)
Q Consensus 687 G~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~s~~~~~~~~~~~g~~l~~~~~~~~p~~~~~~~ 766 (833)
|++........ ......||+.|+|||++.+..++.++|||| .|+++++++++..|+......
T Consensus 160 g~~~~~~~~~~--------~~~~~~~~~~y~aPE~~~~~~~~~~~Di~s----------lG~~l~~l~~g~~p~~~~~~~ 221 (294)
T 2rku_A 160 GLATKVEYDGE--------RKKVLCGTPNYIAPEVLSKKGHSFEVDVWS----------IGCIMYTLLVGKPPFETSCLK 221 (294)
T ss_dssp TTCEECCSTTC--------CBCCCCSCCSSCCHHHHTTSCBCTHHHHHH----------HHHHHHHHHHSSCTTCCSSHH
T ss_pred cCceecccCcc--------ccccccCCCCcCCcchhccCCCCchhhHHH----------HHHHHHHHHhCCCCCCCCCHH
Confidence 99986543221 112346999999999999988999999999 888899999998887532211
Q ss_pred cccchhhhccccchhhhhhhhchHHHHHHHHHHhhccCCCCCCCCCCHHHHHHH
Q 040925 767 DPSLLMEVMTNNSMIQEDKRVKTEECLNAIIRTGVLCSMESPFERMDMRDVVAK 820 (833)
Q Consensus 767 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~ 820 (833)
+ .......... ..+..++..+.+++.+||+.||++|||++|+++.
T Consensus 222 ~--~~~~~~~~~~-------~~~~~~~~~~~~li~~~l~~~p~~Rps~~~ll~~ 266 (294)
T 2rku_A 222 E--TYLRIKKNEY-------SIPKHINPVAASLIQKMLQTDPTARPTINELLND 266 (294)
T ss_dssp H--HHHHHHTTCC-------CCCTTSCHHHHHHHHHHTCSSGGGSCCGGGGGGS
T ss_pred H--HHHHHhhccC-------CCccccCHHHHHHHHHHcccChhhCcCHHHHhhC
Confidence 1 1011111110 1112345678899999999999999999999875
No 203
>1byg_A CSK, protein (C-terminal SRC kinase); protein kinase, phosphorylation, staurosporine, transferase; HET: STU; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A*
Probab=100.00 E-value=5.7e-38 Score=328.21 Aligned_cols=255 Identities=29% Similarity=0.366 Sum_probs=197.9
Q ss_pred HhcCCccCceeccCcceEEEEEEECCCceEEEEEEeeccCCcchhHHHHHHHHHhhcCCCccceEeeEeecCCCCCCceE
Q 040925 529 ATGEFSSSNMIGQGSFGYVYKGTLGEDEMIVAVKVINLKYKGASRSFVAECEALRNIRHRNLIKIITICSSTDFKGTDFK 608 (833)
Q Consensus 529 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~ 608 (833)
..++|++.+.||+|+||.||+|++. ++.||||+++.. ...+.+.+|++++++++||||+++++++... .+..
T Consensus 19 ~~~~y~~~~~lg~G~~g~V~~~~~~--~~~vavK~~~~~--~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~----~~~~ 90 (278)
T 1byg_A 19 NMKELKLLQTIGKGEFGDVMLGDYR--GNKVAVKCIKND--ATAQAFLAEASVMTQLRHSNLVQLLGVIVEE----KGGL 90 (278)
T ss_dssp CGGGEEEEEEEEECSSCEEEEEEET--TEEEEEEECCCC--C--HHHHHTHHHHTTCCCTTBCCEEEEECCC------CC
T ss_pred ChhhceEEeEEecCCCceEEEEEEc--CCEEEEEEecch--hHHHHHHHHHHHHHhCCCCCEeeEEEEEEcC----CCce
Confidence 3568999999999999999999884 889999999643 3457789999999999999999999987433 2468
Q ss_pred eEEEEecCCCChhhhhccCCCccccccCCHHHHHHHHHHHHHHHHHHhhcCCCCceeeCCCCCCeeecCCCcEEEccccc
Q 040925 609 AFVFEYMENGSLKDWLHQSDDQVEVCKLSLIQRVNIAIDVASAMEYLHHHCQPPMVHGDLKPSNVLLDHDMVAHVCDFGL 688 (833)
Q Consensus 609 ~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~gL~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kL~DfG~ 688 (833)
++||||+++|+|.+++..... ..+++..++.++.|++.||+|||+. +|+||||||+||+++.++.+||+|||+
T Consensus 91 ~lv~e~~~~~~L~~~l~~~~~----~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~~l~Dfg~ 163 (278)
T 1byg_A 91 YIVTEYMAKGSLVDYLRSRGR----SVLGGDCLLKFSLDVCEAMEYLEGN---NFVHRDLAARNVLVSEDNVAKVSDFGL 163 (278)
T ss_dssp EEEECCCTTEEHHHHHHHHHH----HHCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECTTSCEEECCCCC
T ss_pred EEEEecCCCCCHHHHHHhccc----ccCCHHHHHHHHHHHHHHHHHHHhC---CccccCCCcceEEEeCCCcEEEeeccc
Confidence 999999999999999976431 1488999999999999999999999 999999999999999999999999999
Q ss_pred ccccCcccccccccCCCccccccccccccCccccCCCCCCcccccccCCcCCCccccCCccHHHHHH-HhCCCccccccc
Q 040925 689 AKFLSDHQLDTAVKTPSSSIGLKGTVGYVAPEYGMGSEASMTGDIFTGRRPIDAVFNEGHSLHEFAK-TALPEKVMEIVD 767 (833)
Q Consensus 689 a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~s~~~~~~~~~~~g~~l~~~~~-~~~p~~~~~~~~ 767 (833)
+........ ...+|+.|+|||++.+..++.++|||| +|++++++++ +..|+......
T Consensus 164 ~~~~~~~~~-----------~~~~~~~y~aPE~~~~~~~~~~~Di~s----------lG~il~~l~t~g~~p~~~~~~~- 221 (278)
T 1byg_A 164 TKEASSTQD-----------TGKLPVKWTAPEALREKKFSTKSDVWS----------FGILLWEIYSFGRVPYPRIPLK- 221 (278)
T ss_dssp -----------------------CCTTTSCHHHHHHCCCCHHHHHHH----------HHHHHHHHHTTSCCSCTTSCGG-
T ss_pred ccccccccc-----------CCCccccccCHHHhCCCCCCchhcHHH----------HHHHHHHHHhCCCCCCCCCCHH-
Confidence 975543211 124789999999998889999999999 7788888887 77776522211
Q ss_pred ccchhhhccccchhhhhhhhchHHHHHHHHHHhhccCCCCCCCCCCHHHHHHHHHHhhhh
Q 040925 768 PSLLMEVMTNNSMIQEDKRVKTEECLNAIIRTGVLCSMESPFERMDMRDVVAKLCHTRET 827 (833)
Q Consensus 768 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~i~~~ 827 (833)
..... +.... ....+..+++.+.+++.+||+.||++|||+.|+++.|+++...
T Consensus 222 -~~~~~-~~~~~-----~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~L~~i~~~ 274 (278)
T 1byg_A 222 -DVVPR-VEKGY-----KMDAPDGCPPAVYEVMKNCWHLDAAMRPSFLQLREQLEHIKTH 274 (278)
T ss_dssp -GHHHH-HTTTC-----CCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred -HHHHH-HhcCC-----CCCCcccCCHHHHHHHHHHhcCChhhCCCHHHHHHHHHHHHhh
Confidence 11111 11100 0111233567789999999999999999999999999999764
No 204
>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A*
Probab=100.00 E-value=2.8e-37 Score=349.16 Aligned_cols=253 Identities=25% Similarity=0.291 Sum_probs=202.3
Q ss_pred HhcCCccCceeccCcceEEEEEEECCCceEEEEEEeecc--CCcchhHHHHHHHHHhhcCCCccceEeeEeecCCCCCCc
Q 040925 529 ATGEFSSSNMIGQGSFGYVYKGTLGEDEMIVAVKVINLK--YKGASRSFVAECEALRNIRHRNLIKIITICSSTDFKGTD 606 (833)
Q Consensus 529 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~--~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~ 606 (833)
..++|++.+.||+|+||.||+|++..+++.||||++... .......+.+|++++++++||||+++++++....
T Consensus 20 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~----- 94 (486)
T 3mwu_A 20 FAERYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTILREVELLKKLDHPNIMKLFEILEDSS----- 94 (486)
T ss_dssp HHHHEEEEEEEECCSSSEEEEEEETTTCCEEEEEEEEHHHHBCSCHHHHHHHHHHHHHCCCTTBCCEEEEEECSS-----
T ss_pred hhcceEEeEEEeecCCEEEEEEEECCCCCEEEEEEEecccccchHHHHHHHHHHHHHhCCCCCcCeEEEEEEcCC-----
Confidence 346799999999999999999999999999999999643 2334567899999999999999999999976654
Q ss_pred eEeEEEEecCCCChhhhhccCCCccccccCCHHHHHHHHHHHHHHHHHHhhcCCCCceeeCCCCCCeeec---CCCcEEE
Q 040925 607 FKAFVFEYMENGSLKDWLHQSDDQVEVCKLSLIQRVNIAIDVASAMEYLHHHCQPPMVHGDLKPSNVLLD---HDMVAHV 683 (833)
Q Consensus 607 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~gL~~LH~~~~~~ivH~Dlkp~NIll~---~~~~~kL 683 (833)
..++||||+++|+|.+++.... .+++..++.++.|++.||.|||+. +|+||||||+||+++ .++.+||
T Consensus 95 ~~~lv~e~~~~~~L~~~~~~~~------~~~~~~~~~i~~qi~~al~~lH~~---~ivH~Dlkp~Nil~~~~~~~~~~kl 165 (486)
T 3mwu_A 95 SFYIVGELYTGGELFDEIIKRK------RFSEHDAARIIKQVFSGITYMHKH---NIVHRDLKPENILLESKEKDCDIKI 165 (486)
T ss_dssp EEEEEECCCCSCBHHHHHHHHS------SCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEESSSSTTCCEEE
T ss_pred EEEEEEEcCCCCcHHHHHHhcC------CCCHHHHHHHHHHHHHHHHHHHHC---CeEeccCchHHEEEecCCCCCCEEE
Confidence 8999999999999999987654 689999999999999999999999 999999999999995 4568999
Q ss_pred cccccccccCcccccccccCCCccccccccccccCccccCCCCCCcccccccCCcCCCccccCCccHHHHHHHhCCCccc
Q 040925 684 CDFGLAKFLSDHQLDTAVKTPSSSIGLKGTVGYVAPEYGMGSEASMTGDIFTGRRPIDAVFNEGHSLHEFAKTALPEKVM 763 (833)
Q Consensus 684 ~DfG~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~s~~~~~~~~~~~g~~l~~~~~~~~p~~~~ 763 (833)
+|||+|+....... .....||+.|+|||++.+ .++.++|||| .|+++|+++++..|+...
T Consensus 166 ~Dfg~a~~~~~~~~---------~~~~~gt~~y~aPE~~~~-~~~~~~Diws----------lG~il~~ll~g~~pf~~~ 225 (486)
T 3mwu_A 166 IDFGLSTCFQQNTK---------MKDRIGTAYYIAPEVLRG-TYDEKCDVWS----------AGVILYILLSGTPPFYGK 225 (486)
T ss_dssp CSCSCTTTBCCC-------------CCTTGGGGCCGGGGGS-CCCHHHHHHH----------HHHHHHHHHHSSCSSCCS
T ss_pred EECCcCeECCCCCc---------cCCCcCCCCCCCHHHhCC-CCCchhhHHH----------HHHHHHHHHhCCCCCCCC
Confidence 99999986544221 123469999999999876 5999999999 888999999999987532
Q ss_pred ccccccchhhhccccchhhhhhhhchHHHHHHHHHHhhccCCCCCCCCCCHHHHHHH
Q 040925 764 EIVDPSLLMEVMTNNSMIQEDKRVKTEECLNAIIRTGVLCSMESPFERMDMRDVVAK 820 (833)
Q Consensus 764 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~ 820 (833)
.. .............. .......+++.+.+++.+||..||++|||+.|+++.
T Consensus 226 ~~--~~~~~~i~~~~~~~---~~~~~~~~s~~~~~li~~~L~~dp~~R~t~~~~l~h 277 (486)
T 3mwu_A 226 NE--YDILKRVETGKYAF---DLPQWRTISDDAKDLIRKMLTFHPSLRITATQCLEH 277 (486)
T ss_dssp SH--HHHHHHHHHTCCCS---CSGGGGGSCHHHHHHHHHHTCSSTTTSCCHHHHHHC
T ss_pred CH--HHHHHHHHhCCCCC---CCcccCCCCHHHHHHHHHHcCCChhhCcCHHHHhcC
Confidence 21 11111111111100 011122345678899999999999999999999875
No 205
>3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB: 3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B
Probab=100.00 E-value=1.6e-37 Score=349.83 Aligned_cols=255 Identities=23% Similarity=0.314 Sum_probs=204.5
Q ss_pred hcCCccCceeccCcceEEEEEEECCCceEEEEEEeeccC---CcchhHHHHHHHHHhhcCCCccceEeeEeecCCCCCCc
Q 040925 530 TGEFSSSNMIGQGSFGYVYKGTLGEDEMIVAVKVINLKY---KGASRSFVAECEALRNIRHRNLIKIITICSSTDFKGTD 606 (833)
Q Consensus 530 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~ 606 (833)
.++|.+.+.||+|+||.||+|++..+++.||+|+++... ....+.+.+|++++++++||||+++++++....
T Consensus 184 ~~~f~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~l~k~~~~~~~~~~~~~~E~~iL~~l~hp~Iv~l~~~~~~~~----- 258 (543)
T 3c4z_A 184 EDWFLDFRVLGRGGFGEVFACQMKATGKLYACKKLNKKRLKKRKGYQGAMVEKKILAKVHSRFIVSLAYAFETKT----- 258 (543)
T ss_dssp GGGEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCCCTTBCCEEEEEECSS-----
T ss_pred hhheEEEEEEeeCCCeEEEEEEECCCCcEEEEEEEEhHHhhhhHHHHHHHHHHHHHHhcCCCCEeeEEEEEeeCC-----
Confidence 367999999999999999999999999999999996432 233467889999999999999999999976554
Q ss_pred eEeEEEEecCCCChhhhhccCCCccccccCCHHHHHHHHHHHHHHHHHHhhcCCCCceeeCCCCCCeeecCCCcEEEccc
Q 040925 607 FKAFVFEYMENGSLKDWLHQSDDQVEVCKLSLIQRVNIAIDVASAMEYLHHHCQPPMVHGDLKPSNVLLDHDMVAHVCDF 686 (833)
Q Consensus 607 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~gL~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kL~Df 686 (833)
..|+||||++||+|.+++...... ...+++..++.++.||+.||.|||+. +|+||||||+||+++.+|.+||+||
T Consensus 259 ~l~lVmE~~~gg~L~~~l~~~~~~--~~~l~e~~~~~~~~qi~~aL~~LH~~---gIvHrDLKP~NILl~~~g~vkL~DF 333 (543)
T 3c4z_A 259 DLCLVMTIMNGGDIRYHIYNVDED--NPGFQEPRAIFYTAQIVSGLEHLHQR---NIIYRDLKPENVLLDDDGNVRISDL 333 (543)
T ss_dssp EEEEEECCCTTCBHHHHHHTSSTT--SCSCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTSCEEECCC
T ss_pred EEEEEEEeccCCCHHHHHHHhhcc--cccccHHHHHHHHHHHHHHHHHHHHc---CCcccCCChHHEEEeCCCCEEEeec
Confidence 899999999999999999765421 12689999999999999999999999 9999999999999999999999999
Q ss_pred ccccccCcccccccccCCCccccccccccccCccccCCCCCCcccccccCCcCCCccccCCccHHHHHHHhCCCccccc-
Q 040925 687 GLAKFLSDHQLDTAVKTPSSSIGLKGTVGYVAPEYGMGSEASMTGDIFTGRRPIDAVFNEGHSLHEFAKTALPEKVMEI- 765 (833)
Q Consensus 687 G~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~s~~~~~~~~~~~g~~l~~~~~~~~p~~~~~~- 765 (833)
|+++....... .....+||+.|+|||++.+..++.++|||| .|+++|+++++..|+.....
T Consensus 334 Gla~~~~~~~~--------~~~~~~GT~~Y~APE~l~~~~~~~~~DiwS----------lGvilyelltG~~PF~~~~~~ 395 (543)
T 3c4z_A 334 GLAVELKAGQT--------KTKGYAGTPGFMAPELLLGEEYDFSVDYFA----------LGVTLYEMIAARGPFRARGEK 395 (543)
T ss_dssp TTCEECCTTCC--------CBCCCCSCTTTSCHHHHTTCCBCTHHHHHH----------HHHHHHHHHHSSCSSCCTTCC
T ss_pred ceeeeccCCCc--------ccccccCCccccChhhhcCCCCChHHhcCc----------chHHHHHHHhCCCCCCCCccc
Confidence 99987644221 122357999999999999999999999999 88999999999999863211
Q ss_pred ccc-cchhhhccccchhhhhhhhchHHHHHHHHHHhhccCCCCCCCCCCH-----HHHHH
Q 040925 766 VDP-SLLMEVMTNNSMIQEDKRVKTEECLNAIIRTGVLCSMESPFERMDM-----RDVVA 819 (833)
Q Consensus 766 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~-----~eil~ 819 (833)
... .+........ ...+..++..+.+++.+||..||++||++ ++|++
T Consensus 396 ~~~~~~~~~i~~~~-------~~~p~~~s~~~~~li~~lL~~dP~~R~~~~~~~a~ei~~ 448 (543)
T 3c4z_A 396 VENKELKQRVLEQA-------VTYPDKFSPASKDFCEALLQKDPEKRLGFRDGSCDGLRT 448 (543)
T ss_dssp CCHHHHHHHHHHCC-------CCCCTTSCHHHHHHHHHHSCSSGGGSCCCBTTBSHHHHT
T ss_pred hhHHHHHHHHhhcc-------cCCCcccCHHHHHHHHHhccCCHhHCCCCcccCHHHHHc
Confidence 111 1111111111 11123356678899999999999999975 66654
No 206
>3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens}
Probab=100.00 E-value=4.3e-37 Score=334.75 Aligned_cols=260 Identities=14% Similarity=0.116 Sum_probs=202.5
Q ss_pred HHhcCCccCceeccCcceEEEEEE-----ECCCceEEEEEEeeccCCcchhHHHHHHHHHhhcC---CCccceEeeEeec
Q 040925 528 KATGEFSSSNMIGQGSFGYVYKGT-----LGEDEMIVAVKVINLKYKGASRSFVAECEALRNIR---HRNLIKIITICSS 599 (833)
Q Consensus 528 ~~~~~y~~~~~lg~G~~g~Vy~~~-----~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~---h~niv~~~~~~~~ 599 (833)
...++|.+.+.||+|+||.||+|+ ...+++.||||+++.. ....+..|++++++++ |+||+++++++..
T Consensus 62 ~~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~---~~~~~~~e~~~~~~l~~~~~~~iv~~~~~~~~ 138 (365)
T 3e7e_A 62 LGSKLVYVHHLLGEGAFAQVYEATQGDLNDAKNKQKFVLKVQKPA---NPWEFYIGTQLMERLKPSMQHMFMKFYSAHLF 138 (365)
T ss_dssp CSSSEEEEEEEEEECSSEEEEEEEC-------CCCCEEEEEESSC---CHHHHHHHHHHHHHSCGGGGGGBCCEEEEEEC
T ss_pred ECCEEEEEEEEeeccCCEEEEEEEecCCcccccCcEEEEEEeCCC---ChhHHHHHHHHHHHhhhhhhhhhhhhheeeec
Confidence 345689999999999999999994 5668899999999643 4567788888888886 9999999999866
Q ss_pred CCCCCCceEeEEEEecCCCChhhhhccCCCccccccCCHHHHHHHHHHHHHHHHHHhhcCCCCceeeCCCCCCeeecC--
Q 040925 600 TDFKGTDFKAFVFEYMENGSLKDWLHQSDDQVEVCKLSLIQRVNIAIDVASAMEYLHHHCQPPMVHGDLKPSNVLLDH-- 677 (833)
Q Consensus 600 ~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~gL~~LH~~~~~~ivH~Dlkp~NIll~~-- 677 (833)
.+ ..++||||+++|+|.+++...... ....+++..++.|+.|++.||+|||+. +||||||||+|||++.
T Consensus 139 ~~-----~~~lv~e~~~~g~L~~~l~~~~~~-~~~~l~~~~~~~i~~qi~~~L~~lH~~---~ivHrDiKp~NIll~~~~ 209 (365)
T 3e7e_A 139 QN-----GSVLVGELYSYGTLLNAINLYKNT-PEKVMPQGLVISFAMRMLYMIEQVHDC---EIIHGDIKPDNFILGNGF 209 (365)
T ss_dssp SS-----CEEEEECCCCSCBHHHHHHHHHTS-TTCSCCHHHHHHHHHHHHHHHHHHHTT---TEECCCCSGGGEEECGGG
T ss_pred CC-----CcEEEEeccCCCcHHHHHHHhhcc-cccCCCHHHHHHHHHHHHHHHHHHhhC---CeecCCCCHHHEEecccc
Confidence 55 789999999999999999753211 012699999999999999999999999 9999999999999998
Q ss_pred ---------CCcEEEcccccccccCcccccccccCCCccccccccccccCccccCCCCCCcccccccCCcCCCccccCCc
Q 040925 678 ---------DMVAHVCDFGLAKFLSDHQLDTAVKTPSSSIGLKGTVGYVAPEYGMGSEASMTGDIFTGRRPIDAVFNEGH 748 (833)
Q Consensus 678 ---------~~~~kL~DfG~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~s~~~~~~~~~~~g~ 748 (833)
++.+||+|||+|+.+..... .......+||+.|||||++.+..++.++|||| +|+
T Consensus 210 ~~~~~~~~~~~~~kl~DFG~a~~~~~~~~------~~~~~~~~gt~~y~aPE~~~~~~~~~~~Diws----------lG~ 273 (365)
T 3e7e_A 210 LEQDDEDDLSAGLALIDLGQSIDMKLFPK------GTIFTAKCETSGFQCVEMLSNKPWNYQIDYFG----------VAA 273 (365)
T ss_dssp TCC------CTTEEECCCTTCEEGGGSCT------TEEECCSSCTTSCCCHHHHTTCCBSTHHHHHH----------HHH
T ss_pred cCccccccccCCEEEeeCchhhhhhccCC------CceeeeecCCCCCCChHHhcCCCCCccccHHH----------HHH
Confidence 89999999999976542211 11123357999999999999999999999999 899
Q ss_pred cHHHHHHHhCCCcccccccccchhhhccccchhhhhhhhchHHHHHHHHHHhhccCCCCCCCC-CCHHHHHHHHHHhhhh
Q 040925 749 SLHEFAKTALPEKVMEIVDPSLLMEVMTNNSMIQEDKRVKTEECLNAIIRTGVLCSMESPFER-MDMRDVVAKLCHTRET 827 (833)
Q Consensus 749 ~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~R-Pt~~eil~~L~~i~~~ 827 (833)
++++++++..|+.......... .... .+.. ..+.+.+++..|++.+|.+| |+++++.+.|+.+.+.
T Consensus 274 il~elltg~~pf~~~~~~~~~~-~~~~---------~~~~---~~~~~~~~~~~~l~~~p~~r~~~~~~l~~~l~~~l~~ 340 (365)
T 3e7e_A 274 TVYCMLFGTYMKVKNEGGECKP-EGLF---------RRLP---HLDMWNEFFHVMLNIPDCHHLPSLDLLRQKLKKVFQQ 340 (365)
T ss_dssp HHHHHHHSSCCCEEEETTEEEE-CSCC---------TTCS---SHHHHHHHHHHHHCCCCTTCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCccccCCCCceee-chhc---------cccC---cHHHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHH
Confidence 9999999999875322111110 0000 0001 14456788889999999999 5788888888887665
Q ss_pred h
Q 040925 828 F 828 (833)
Q Consensus 828 ~ 828 (833)
.
T Consensus 341 ~ 341 (365)
T 3e7e_A 341 H 341 (365)
T ss_dssp H
T ss_pred h
Confidence 3
No 207
>3lm5_A Serine/threonine-protein kinase 17B; STK17B, serine/threonine kinase 17B, DRAK2, DAP kinase relat apoptosis-inducing protein kinase 2; HET: QUE; 2.29A {Homo sapiens} PDB: 3lm0_A*
Probab=100.00 E-value=1.6e-37 Score=332.64 Aligned_cols=263 Identities=16% Similarity=0.189 Sum_probs=204.9
Q ss_pred chHHHHHHhcCCccC-ceeccCcceEEEEEEECCCceEEEEEEeeccCC--cchhHHHHHHHHHhhcC-CCccceEeeEe
Q 040925 522 SYAELSKATGEFSSS-NMIGQGSFGYVYKGTLGEDEMIVAVKVINLKYK--GASRSFVAECEALRNIR-HRNLIKIITIC 597 (833)
Q Consensus 522 ~~~~~~~~~~~y~~~-~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~--~~~~~~~~E~~~l~~l~-h~niv~~~~~~ 597 (833)
.+.......++|.+. +.||+|+||.||+|++..+++.||+|+++.... .....+.+|+.++++++ ||||+++++++
T Consensus 19 ~~~~~~~~~~~y~~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~iv~~~~~~ 98 (327)
T 3lm5_A 19 YFQSMENFNNFYILTSKELGRGKFAVVRQCISKSTGQEYAAKFLKKRRRGQDCRAEILHEIAVLELAKSCPRVINLHEVY 98 (327)
T ss_dssp CSBCHHHHHHHEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEESEETTEECHHHHHHHHHHHHHTTTCTTBCCEEEEE
T ss_pred HHHHHHhhhhEEeeccceeCCCCCeEEEEEEECCCCCEEEEEEEehhhcchHHHHHHHHHHHHHHhccCCCCEEEEEEEE
Confidence 344445566678887 899999999999999999999999999975432 23567899999999995 79999999997
Q ss_pred ecCCCCCCceEeEEEEecCCCChhhhhccCCCccccccCCHHHHHHHHHHHHHHHHHHhhcCCCCceeeCCCCCCeeecC
Q 040925 598 SSTDFKGTDFKAFVFEYMENGSLKDWLHQSDDQVEVCKLSLIQRVNIAIDVASAMEYLHHHCQPPMVHGDLKPSNVLLDH 677 (833)
Q Consensus 598 ~~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~gL~~LH~~~~~~ivH~Dlkp~NIll~~ 677 (833)
.... ..++||||+++|+|.+++...... .+++.+++.++.|++.||+|||+. ||+||||||+||+++.
T Consensus 99 ~~~~-----~~~lv~e~~~~~~L~~~~~~~~~~----~~~~~~~~~i~~ql~~~L~~LH~~---givH~Dikp~NIl~~~ 166 (327)
T 3lm5_A 99 ENTS-----EIILILEYAAGGEIFSLCLPELAE----MVSENDVIRLIKQILEGVYYLHQN---NIVHLDLKPQNILLSS 166 (327)
T ss_dssp ECSS-----EEEEEEECCTTEEGGGGGSSCC-C----CCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEESC
T ss_pred EeCC-----eEEEEEEecCCCcHHHHHHHhccc----CCCHHHHHHHHHHHHHHHHHHHHC---CeecCcCChHHEEEec
Confidence 6554 899999999999999998754322 689999999999999999999999 9999999999999988
Q ss_pred ---CCcEEEcccccccccCcccccccccCCCccccccccccccCccccCCCCCCcccccccCCcCCCccccCCccHHHHH
Q 040925 678 ---DMVAHVCDFGLAKFLSDHQLDTAVKTPSSSIGLKGTVGYVAPEYGMGSEASMTGDIFTGRRPIDAVFNEGHSLHEFA 754 (833)
Q Consensus 678 ---~~~~kL~DfG~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~s~~~~~~~~~~~g~~l~~~~ 754 (833)
++.+||+|||+++....... .....||+.|+|||++.+..++.++|||| .|+++++++
T Consensus 167 ~~~~~~~kL~Dfg~a~~~~~~~~---------~~~~~gt~~y~aPE~~~~~~~~~~~Diws----------lG~il~~ll 227 (327)
T 3lm5_A 167 IYPLGDIKIVDFGMSRKIGHACE---------LREIMGTPEYLAPEILNYDPITTATDMWN----------IGIIAYMLL 227 (327)
T ss_dssp BTTBCCEEECCGGGCEEC------------------CCCGGGCCHHHHTTCCCCTHHHHHH----------HHHHHHHHH
T ss_pred CCCCCcEEEeeCccccccCCccc---------cccccCCcCccCCeeecCCCCCchhhHHH----------HHHHHHHHH
Confidence 78999999999987644221 12346999999999999999999999999 888999999
Q ss_pred HHhCCCcccccccccchhhhccccchhhhhhhhchHHHHHHHHHHhhccCCCCCCCCCCHHHHHHH
Q 040925 755 KTALPEKVMEIVDPSLLMEVMTNNSMIQEDKRVKTEECLNAIIRTGVLCSMESPFERMDMRDVVAK 820 (833)
Q Consensus 755 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~ 820 (833)
++..|+......+... ....... .........+++.+.+++.+||+.||++|||++|+++.
T Consensus 228 ~g~~pf~~~~~~~~~~--~i~~~~~---~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~~ll~h 288 (327)
T 3lm5_A 228 THTSPFVGEDNQETYL--NISQVNV---DYSEETFSSVSQLATDFIQSLLVKNPEKRPTAEICLSH 288 (327)
T ss_dssp HSSCSSCCSSHHHHHH--HHHHTCC---CCCTTTTTTSCHHHHHHHHHHSCSSGGGSCCHHHHTTC
T ss_pred hCCCCCCCCCchHHHH--HHHhccc---ccCchhhcccCHHHHHHHHHHcCCChhhCcCHHHHhCC
Confidence 9998875322111100 0000000 00111122346678899999999999999999999764
No 208
>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A*
Probab=100.00 E-value=1e-37 Score=335.24 Aligned_cols=250 Identities=18% Similarity=0.252 Sum_probs=204.1
Q ss_pred hcCCccCceeccCcceEEEEEEECCCceEEEEEEeeccC---CcchhHHHHHHHHHhhcCCCccceEeeEeecCCCCCCc
Q 040925 530 TGEFSSSNMIGQGSFGYVYKGTLGEDEMIVAVKVINLKY---KGASRSFVAECEALRNIRHRNLIKIITICSSTDFKGTD 606 (833)
Q Consensus 530 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~ 606 (833)
.++|.+.+.||+|+||.||+|++..+++.||+|++.... ....+.+.+|+.++++++||||+++++++.+.+
T Consensus 40 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~----- 114 (335)
T 2owb_A 40 RRRYVRGRFLGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQHVVGFHGFFEDND----- 114 (335)
T ss_dssp TEEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEECSS-----
T ss_pred CCceEEEEEEeeCCCeEEEEEEECCCCCEEEEEEechhhhcCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEecCC-----
Confidence 467999999999999999999999999999999997542 223467889999999999999999999976654
Q ss_pred eEeEEEEecCCCChhhhhccCCCccccccCCHHHHHHHHHHHHHHHHHHhhcCCCCceeeCCCCCCeeecCCCcEEEccc
Q 040925 607 FKAFVFEYMENGSLKDWLHQSDDQVEVCKLSLIQRVNIAIDVASAMEYLHHHCQPPMVHGDLKPSNVLLDHDMVAHVCDF 686 (833)
Q Consensus 607 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~gL~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kL~Df 686 (833)
..++||||+++++|.+++.... .+++.+++.++.|++.||+|||+. +|+||||||+||+++.++.+||+||
T Consensus 115 ~~~lv~e~~~~~~L~~~~~~~~------~l~~~~~~~i~~qi~~aL~~LH~~---~ivH~dlkp~NIl~~~~~~~kl~Df 185 (335)
T 2owb_A 115 FVFVVLELCRRRSLLELHKRRK------ALTEPEARYYLRQIVLGCQYLHRN---RVIHRDLKLGNLFLNEDLEVKIGDF 185 (335)
T ss_dssp EEEEEECCCTTCBHHHHHHHHC------SCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEECTTCCEEECCC
T ss_pred eEEEEEecCCCCCHHHHHhccC------CCCHHHHHHHHHHHHHHHHHHHHC---CCEecCCCchhEEEcCCCCEEEeec
Confidence 8999999999999999987643 689999999999999999999999 9999999999999999999999999
Q ss_pred ccccccCcccccccccCCCccccccccccccCccccCCCCCCcccccccCCcCCCccccCCccHHHHHHHhCCCcccccc
Q 040925 687 GLAKFLSDHQLDTAVKTPSSSIGLKGTVGYVAPEYGMGSEASMTGDIFTGRRPIDAVFNEGHSLHEFAKTALPEKVMEIV 766 (833)
Q Consensus 687 G~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~s~~~~~~~~~~~g~~l~~~~~~~~p~~~~~~~ 766 (833)
|+++....... ......||+.|+|||++.+..++.++|||| +|+++++++++..|+......
T Consensus 186 g~~~~~~~~~~--------~~~~~~gt~~y~aPE~~~~~~~~~~~Di~s----------lG~il~~l~~g~~pf~~~~~~ 247 (335)
T 2owb_A 186 GLATKVEYDGE--------RKKVLCGTPNYIAPEVLSKKGHSFEVDVWS----------IGCIMYTLLVGKPPFETSCLK 247 (335)
T ss_dssp TTCEECCSTTC--------CBCCCCSCCSSCCHHHHHTSCBCTHHHHHH----------HHHHHHHHHHSSCTTCCSSHH
T ss_pred cCceecccCcc--------cccccCCCccccCHHHhccCCCCchhhHHH----------HHHHHHHHHHCcCCCCCCCHH
Confidence 99986643221 112346999999999999989999999999 888899999998887532211
Q ss_pred cccchhhhccccchhhhhhhhchHHHHHHHHHHhhccCCCCCCCCCCHHHHHHH
Q 040925 767 DPSLLMEVMTNNSMIQEDKRVKTEECLNAIIRTGVLCSMESPFERMDMRDVVAK 820 (833)
Q Consensus 767 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~ 820 (833)
+ .......... ..+..++..+.+++.+||+.||++|||++|+++.
T Consensus 248 ~--~~~~~~~~~~-------~~~~~~~~~~~~li~~~l~~dp~~Rps~~ell~~ 292 (335)
T 2owb_A 248 E--TYLRIKKNEY-------SIPKHINPVAASLIQKMLQTDPTARPTINELLND 292 (335)
T ss_dssp H--HHHHHHHTCC-------CCCTTSCHHHHHHHHHHTCSSGGGSCCGGGGGGS
T ss_pred H--HHHHHhcCCC-------CCCccCCHHHHHHHHHHccCChhHCcCHHHHhcC
Confidence 1 1011111100 1112345568899999999999999999999874
No 209
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=4.3e-36 Score=348.31 Aligned_cols=312 Identities=22% Similarity=0.210 Sum_probs=246.4
Q ss_pred CCCCCCEEEccCCcccccCCccCCCCCCCCEEEcCCCcccccCCccccCCCCCcEEECCCcccccccCchhhcCCCCccE
Q 040925 21 NLSDLEVIRIMGNSLGGKIPTTLGLLRNLVSLNVAENKFSGMFPRSICNISSLELIQLALNRFSGNLPFDIVVNLPNLKA 100 (833)
Q Consensus 21 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~ 100 (833)
.+.+++.|++++|.++...+..|..+++|++|+|++|.|+++.|..|.++++|++|+|++|.++ .+|+..|.++++|++
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~ 127 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTV 127 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCE
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCC-CCCHHHHcCCCCCCE
Confidence 4578899999999998777777899999999999999999888889999999999999999998 788888899999999
Q ss_pred EEccCCcceeeCCccccCCCCCcEEEcccCccccccCcCccCCCcCceEecccccCCCCCCCCcccccccCCCCCCCEEE
Q 040925 101 LAIGGNNFFGSIPYSLSNASNLELLDLSVNQFKGNVSIDFSSLKNLLWLNLEQNNLGTGTATDLDFVTFLTNCSSLKALS 180 (833)
Q Consensus 101 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~l~~L~~L~ 180 (833)
|+|++|.|++..+..|+++++|++|+|++|+|+++.+..|.++++|++|+|++|.++.++ +..+++|+.|+
T Consensus 128 L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---------~~~l~~L~~L~ 198 (597)
T 3oja_B 128 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---------LSLIPSLFHAN 198 (597)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---------GGGCTTCSEEE
T ss_pred EEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---------hhhhhhhhhhh
Confidence 999999999777777899999999999999999999999999999999999999997753 34678899999
Q ss_pred ccCCcCcccCChhHhhhcccccEEEccCccccccCChhhhcCCCCCeEeccCCcccccCCccccCCCCCCEEEcccccCc
Q 040925 181 LADNQFGGELPHSIANLSSTVINFGIGRNQISGTIPPGIRNLVNLIGFGAEENQLHGTIPDAIGELKNLQKLCLFRNFLQ 260 (833)
Q Consensus 181 Ls~N~l~~~~p~~~~~l~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 260 (833)
+++|.+++. ....+|+.|++++|.+....+.. .++|+.|+|++|.++
T Consensus 199 l~~n~l~~l------------------------------~~~~~L~~L~ls~n~l~~~~~~~---~~~L~~L~L~~n~l~ 245 (597)
T 3oja_B 199 VSYNLLSTL------------------------------AIPIAVEELDASHNSINVVRGPV---NVELTILKLQHNNLT 245 (597)
T ss_dssp CCSSCCSEE------------------------------ECCTTCSEEECCSSCCCEEECSC---CSCCCEEECCSSCCC
T ss_pred cccCccccc------------------------------cCCchhheeeccCCccccccccc---CCCCCEEECCCCCCC
Confidence 999988731 11234566666666665433322 246666777777666
Q ss_pred ccCCccccCCCCCCeEEeecccccCCCCCCCCCCCccceeecCCceecccCCcccccccccceeeecCCCccCCCCCccc
Q 040925 261 GRIPSGLGNLTKLANLELSSNSLQGNIPSSLGNCQNLMSFTASQNKLTGALPHQLLSITTLSLYLDLSNNLLNGSLPLQV 340 (833)
Q Consensus 261 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~ll~~L~ls~N~l~~~~~~~~ 340 (833)
+ +..+..+++|+.|+|++|.+++..|..|..+++|+.|+|++|+++ .+|..+..++.+ +.|+|++|.++ .+|..+
T Consensus 246 ~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L-~~L~Ls~N~l~-~i~~~~ 320 (597)
T 3oja_B 246 D--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTL-KVLDLSHNHLL-HVERNQ 320 (597)
T ss_dssp C--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCC-EEECSSSCCTTC-CEEECCSSCCC-CCGGGH
T ss_pred C--ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCC-CCCcccccCCCC-cEEECCCCCCC-ccCccc
Confidence 4 355666667777777777776666666777777777777777776 355555555555 67777777777 567778
Q ss_pred ccCCCcCEEeccCCcCCCCCCccccCCCCCcEEeecCCccccc
Q 040925 341 GHLKNLVILDISSNQFSGVIPGTLSTCVCLEYLDISSNSFHGV 383 (833)
Q Consensus 341 ~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 383 (833)
..+++|+.|+|++|.+++.. +..+++|+.|+|++|.+.+.
T Consensus 321 ~~l~~L~~L~L~~N~l~~~~---~~~~~~L~~L~l~~N~~~~~ 360 (597)
T 3oja_B 321 PQFDRLENLYLDHNSIVTLK---LSTHHTLKNLTLSHNDWDCN 360 (597)
T ss_dssp HHHTTCSEEECCSSCCCCCC---CCTTCCCSEEECCSSCEEHH
T ss_pred ccCCCCCEEECCCCCCCCcC---hhhcCCCCEEEeeCCCCCCh
Confidence 88999999999999998653 67788999999999999854
No 210
>3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase, ATP-binding, disease mutation, nucleoti binding, phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB: 3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A* 2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3v01_A* 3v04_A* 3dv3_A* 3mbl_A* 3pp1_A* 3orn_A* 3os3_A* 3sls_A* 1s9i_A* ...
Probab=100.00 E-value=9.9e-38 Score=339.36 Aligned_cols=256 Identities=23% Similarity=0.367 Sum_probs=201.3
Q ss_pred cCCccCceeccCcceEEEEEEECCCceEEEEEEeeccCC-cchhHHHHHHHHHhhcCCCccceEeeEeecCCCCCCceEe
Q 040925 531 GEFSSSNMIGQGSFGYVYKGTLGEDEMIVAVKVINLKYK-GASRSFVAECEALRNIRHRNLIKIITICSSTDFKGTDFKA 609 (833)
Q Consensus 531 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~-~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~~ 609 (833)
++|++.+.||+|+||.||+|++..+++.||+|+++.... ...+.+.+|++++++++||||+++++++...+ ..+
T Consensus 33 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~-----~~~ 107 (360)
T 3eqc_A 33 DDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIRELQVLHECNSPYIVGFYGAFYSDG-----EIS 107 (360)
T ss_dssp GGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEECCCCHHHHHHHHHHHGGGGGCCCTTBCCEEEEEEETT-----EEE
T ss_pred ccceeeeeecCCCCeEEEEEEECCCCcEEEEEEeccccCHHHHHHHHHHHHHHHHCCCCCEEEEeEEEEECC-----EEE
Confidence 579999999999999999999999999999999975532 23467899999999999999999999987654 899
Q ss_pred EEEEecCCCChhhhhccCCCccccccCCHHHHHHHHHHHHHHHHHHhhcCCCCceeeCCCCCCeeecCCCcEEEcccccc
Q 040925 610 FVFEYMENGSLKDWLHQSDDQVEVCKLSLIQRVNIAIDVASAMEYLHHHCQPPMVHGDLKPSNVLLDHDMVAHVCDFGLA 689 (833)
Q Consensus 610 lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~gL~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kL~DfG~a 689 (833)
+||||+++|+|.+++.... .+++..+..++.|++.||+|||+.. +|+||||||+||+++.++.+||+|||++
T Consensus 108 lv~e~~~~~~L~~~l~~~~------~~~~~~~~~i~~~i~~~l~~lh~~~--~i~H~dlkp~Nil~~~~~~~kl~Dfg~~ 179 (360)
T 3eqc_A 108 ICMEHMDGGSLDQVLKKAG------RIPEQILGKVSIAVIKGLTYLREKH--KIMHRDVKPSNILVNSRGEIKLCDFGVS 179 (360)
T ss_dssp EEECCCTTCBHHHHHHHHS------SCCHHHHHHHHHHHHHHHHHHHHHH--CCCCSCCSGGGEEECTTCCEEECCCCCC
T ss_pred EEEECCCCCCHHHHHHHcC------CCCHHHHHHHHHHHHHHHHHHHHhC--CEEcCCccHHHEEECCCCCEEEEECCCC
Confidence 9999999999999998654 6899999999999999999999832 8999999999999999999999999999
Q ss_pred cccCcccccccccCCCccccccccccccCccccCCCCCCcccccccCCcCCCccccCCccHHHHHHHhCCCccccccccc
Q 040925 690 KFLSDHQLDTAVKTPSSSIGLKGTVGYVAPEYGMGSEASMTGDIFTGRRPIDAVFNEGHSLHEFAKTALPEKVMEIVDPS 769 (833)
Q Consensus 690 ~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~s~~~~~~~~~~~g~~l~~~~~~~~p~~~~~~~~~~ 769 (833)
....... .....||+.|+|||++.+..++.++|||| +|+++++++++..|+......+-.
T Consensus 180 ~~~~~~~----------~~~~~gt~~y~aPE~~~~~~~~~~~Di~s----------lG~il~~l~~g~~pf~~~~~~~~~ 239 (360)
T 3eqc_A 180 GQLIDSM----------ANSFVGTRSYMSPERLQGTHYSVQSDIWS----------MGLSLVEMAVGRYPIPPPDAKELE 239 (360)
T ss_dssp HHHHHHC--------------CCCCTTCCHHHHTTCCCSHHHHHHH----------HHHHHHHHHHTSCCSSCCCHHHHH
T ss_pred ccccccc----------ccCCCCCCCeECHHHHcCCCCCchhhHHH----------HHHHHHHHHhCCCCCCCCCHHHHH
Confidence 7553321 11246999999999999999999999999 788889999998887522111000
Q ss_pred chhh------------------------------------hccccchhhhhhhhchHHHHHHHHHHhhccCCCCCCCCCC
Q 040925 770 LLME------------------------------------VMTNNSMIQEDKRVKTEECLNAIIRTGVLCSMESPFERMD 813 (833)
Q Consensus 770 ~~~~------------------------------------~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt 813 (833)
.... .... .............++..+.+++.+||+.||++|||
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt 318 (360)
T 3eqc_A 240 LMFGCQVEGDAAETPPRPRTPGRPLNKFGMDSRPPMAIFELLDY-IVNEPPPKLPSGVFSLEFQDFVNKCLIKNPAERAD 318 (360)
T ss_dssp HHHC------------------------------CCCHHHHHHH-HHHSCCCCCCTTTSCHHHHHHHHHHHCSSTTTSCC
T ss_pred HHhcccccccCCCCCCCcccCCCcccccccCCCCcccchhhhhH-HhccCCCCCCcccccHHHHHHHHHHhhcChhhCCC
Confidence 0000 0000 00000000111124567899999999999999999
Q ss_pred HHHHHHH
Q 040925 814 MRDVVAK 820 (833)
Q Consensus 814 ~~eil~~ 820 (833)
++|+++.
T Consensus 319 ~~ell~h 325 (360)
T 3eqc_A 319 LKQLMVH 325 (360)
T ss_dssp HHHHHTS
T ss_pred HHHHhhC
Confidence 9999875
No 211
>2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A
Probab=100.00 E-value=4.7e-37 Score=333.64 Aligned_cols=258 Identities=23% Similarity=0.315 Sum_probs=204.0
Q ss_pred HHHHHHhcCCccCceeccCcceEEEEEEECCCceEEEEEEeeccCCc--------chhHHHHHHHHHhhc-CCCccceEe
Q 040925 524 AELSKATGEFSSSNMIGQGSFGYVYKGTLGEDEMIVAVKVINLKYKG--------ASRSFVAECEALRNI-RHRNLIKII 594 (833)
Q Consensus 524 ~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~--------~~~~~~~E~~~l~~l-~h~niv~~~ 594 (833)
.......++|++.+.||+|+||.||+|++..+|+.||||+++..... ..+.+.+|+.+++++ +||||++++
T Consensus 87 ~~~~~~~~~y~~~~~lg~G~~g~Vy~a~~~~~g~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~ 166 (365)
T 2y7j_A 87 AAAKEFYQKYDPKDVIGRGVSSVVRRCVHRATGHEFAVKIMEVTAERLSPEQLEEVREATRRETHILRQVAGHPHIITLI 166 (365)
T ss_dssp HHHHHHHHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEETTSSCCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEE
T ss_pred hhhhhhhhhcccceEEecCCCEEEEEEEECCCCcEEEEEEEEccccccCHHHHHHHHHHHHHHHHHHHHhcCCCCEeEEE
Confidence 34445567899999999999999999999889999999999754321 135678999999999 799999999
Q ss_pred eEeecCCCCCCceEeEEEEecCCCChhhhhccCCCccccccCCHHHHHHHHHHHHHHHHHHhhcCCCCceeeCCCCCCee
Q 040925 595 TICSSTDFKGTDFKAFVFEYMENGSLKDWLHQSDDQVEVCKLSLIQRVNIAIDVASAMEYLHHHCQPPMVHGDLKPSNVL 674 (833)
Q Consensus 595 ~~~~~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~gL~~LH~~~~~~ivH~Dlkp~NIl 674 (833)
+++.... ..++||||+++|+|.+++.... .+++..+..++.|++.||.|||+. ||+||||||+||+
T Consensus 167 ~~~~~~~-----~~~lv~e~~~g~~L~~~l~~~~------~l~~~~~~~i~~qi~~~L~~LH~~---gi~H~Dlkp~NIl 232 (365)
T 2y7j_A 167 DSYESSS-----FMFLVFDLMRKGELFDYLTEKV------ALSEKETRSIMRSLLEAVSFLHAN---NIVHRDLKPENIL 232 (365)
T ss_dssp EEEEBSS-----EEEEEECCCTTCBHHHHHHHHS------SCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEE
T ss_pred EEEeeCC-----EEEEEEEeCCCCcHHHHHHhcC------CCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHEE
Confidence 9976554 8999999999999999997643 689999999999999999999999 9999999999999
Q ss_pred ecCCCcEEEcccccccccCcccccccccCCCccccccccccccCccccCC------CCCCcccccccCCcCCCccccCCc
Q 040925 675 LDHDMVAHVCDFGLAKFLSDHQLDTAVKTPSSSIGLKGTVGYVAPEYGMG------SEASMTGDIFTGRRPIDAVFNEGH 748 (833)
Q Consensus 675 l~~~~~~kL~DfG~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~------~~~~~~~Di~s~~~~~~~~~~~g~ 748 (833)
++.++.+||+|||++..+..... .....||+.|+|||++.+ ..++.++|||| +|+
T Consensus 233 ~~~~~~ikl~DfG~~~~~~~~~~---------~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~Di~s----------lG~ 293 (365)
T 2y7j_A 233 LDDNMQIRLSDFGFSCHLEPGEK---------LRELCGTPGYLAPEILKCSMDETHPGYGKEVDLWA----------CGV 293 (365)
T ss_dssp ECTTCCEEECCCTTCEECCTTCC---------BCCCCSCGGGCCHHHHHHTTCTTSCCBCTTHHHHH----------HHH
T ss_pred ECCCCCEEEEecCcccccCCCcc---------cccCCCCCCccChhhccccccccCcCCCchhhHHh----------HHH
Confidence 99999999999999986654221 123569999999998753 35889999999 888
Q ss_pred cHHHHHHHhCCCcccccccccchhhhccccchhhhhhhhchHHHHHHHHHHhhccCCCCCCCCCCHHHHHH
Q 040925 749 SLHEFAKTALPEKVMEIVDPSLLMEVMTNNSMIQEDKRVKTEECLNAIIRTGVLCSMESPFERMDMRDVVA 819 (833)
Q Consensus 749 ~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~ 819 (833)
++++++++..|+...... .............. ......++..+.+++.+||..||++|||++|+++
T Consensus 294 il~ell~g~~pf~~~~~~--~~~~~i~~~~~~~~---~~~~~~~~~~~~~li~~~L~~dP~~Rps~~ell~ 359 (365)
T 2y7j_A 294 ILFTLLAGSPPFWHRRQI--LMLRMIMEGQYQFS---SPEWDDRSSTVKDLISRLLQVDPEARLTAEQALQ 359 (365)
T ss_dssp HHHHHHHSSCSSCCSSHH--HHHHHHHHTCCCCC---HHHHSSSCHHHHHHHHHHSCSSTTTSCCHHHHHH
T ss_pred HHHHHHHCCCCCCCCCHH--HHHHHHHhCCCCCC---CcccccCCHHHHHHHHHHcCCChhHCcCHHHHhc
Confidence 999999999887532111 11111111110000 0111223567889999999999999999999986
No 212
>3mtl_A Cell division protein kinase 16; pctaire1, indirubin, structural genomics, structural consortium, SGC, transferase; HET: FEF; 2.40A {Homo sapiens}
Probab=100.00 E-value=8.1e-38 Score=334.42 Aligned_cols=258 Identities=20% Similarity=0.283 Sum_probs=192.2
Q ss_pred cCCccCceeccCcceEEEEEEECCCceEEEEEEeeccCCc-chhHHHHHHHHHhhcCCCccceEeeEeecCCCCCCceEe
Q 040925 531 GEFSSSNMIGQGSFGYVYKGTLGEDEMIVAVKVINLKYKG-ASRSFVAECEALRNIRHRNLIKIITICSSTDFKGTDFKA 609 (833)
Q Consensus 531 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~-~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~~ 609 (833)
++|++.+.||+|+||.||+|++..+++.||||+++..... ....+.+|++++++++||||+++++++.... ..+
T Consensus 2 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~-----~~~ 76 (324)
T 3mtl_A 2 ETYIKLDKLGEGTYATVYKGKSKLTDNLVALKEIRLEHEEGAPCTAIREVSLLKDLKHANIVTLHDIIHTEK-----SLT 76 (324)
T ss_dssp CSEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECC------CCCCCCCHHHHSCCCCTTBCCEEEEEECSS-----CEE
T ss_pred CceEEEEEEcCCCCEEEEEEEECCCCcEEEEEEEecccccccchhHHHHHHHHHhcCCCCCCeeeeEEeeCC-----EEE
Confidence 5799999999999999999999999999999999744322 2235567999999999999999999976554 789
Q ss_pred EEEEecCCCChhhhhccCCCccccccCCHHHHHHHHHHHHHHHHHHhhcCCCCceeeCCCCCCeeecCCCcEEEcccccc
Q 040925 610 FVFEYMENGSLKDWLHQSDDQVEVCKLSLIQRVNIAIDVASAMEYLHHHCQPPMVHGDLKPSNVLLDHDMVAHVCDFGLA 689 (833)
Q Consensus 610 lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~gL~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kL~DfG~a 689 (833)
+||||++ |+|.+++..... .+++..++.++.|++.||+|||+. ||+||||||+||+++.++.+||+|||++
T Consensus 77 lv~e~~~-~~l~~~~~~~~~-----~~~~~~~~~~~~qi~~aL~~LH~~---~ivH~Dikp~NIl~~~~~~~kl~Dfg~a 147 (324)
T 3mtl_A 77 LVFEYLD-KDLKQYLDDCGN-----IINMHNVKLFLFQLLRGLAYCHRQ---KVLHRDLKPQNLLINERGELKLADFGLA 147 (324)
T ss_dssp EEEECCS-EEHHHHHHHTTT-----CCCHHHHHHHHHHHHHHHHHHHHT---TEEESSCCGGGEEECTTCCEEECSSSEE
T ss_pred EEecccc-cCHHHHHHhcCC-----CCCHHHHHHHHHHHHHHHHHHHHC---CccCCCcCHHHEEECCCCCEEEccCccc
Confidence 9999997 599999886542 589999999999999999999999 9999999999999999999999999999
Q ss_pred cccCcccccccccCCCccccccccccccCccccCC-CCCCcccccccCCcCCCccccCCccHHHHHHHhCCCcccccccc
Q 040925 690 KFLSDHQLDTAVKTPSSSIGLKGTVGYVAPEYGMG-SEASMTGDIFTGRRPIDAVFNEGHSLHEFAKTALPEKVMEIVDP 768 (833)
Q Consensus 690 ~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Di~s~~~~~~~~~~~g~~l~~~~~~~~p~~~~~~~~~ 768 (833)
+....... ......||+.|+|||++.+ ..++.++|||| .|+++++++++..|+......+.
T Consensus 148 ~~~~~~~~--------~~~~~~~t~~y~aPE~~~~~~~~~~~~Diws----------lG~il~~l~~g~~pf~~~~~~~~ 209 (324)
T 3mtl_A 148 RAKSIPTK--------TYDNEVVTLWYRPPDILLGSTDYSTQIDMWG----------VGCIFYEMATGRPLFPGSTVEEQ 209 (324)
T ss_dssp ECC--------------------CGGGCCHHHHTTCCCCCTHHHHHH----------HHHHHHHHHHSSCSCCCSSHHHH
T ss_pred ccccCCcc--------ccccccCcccccChhhhcCCCCCCcHHHHHH----------HHHHHHHHHhCCCCCCCCCHHHH
Confidence 86543221 1123468999999999876 56899999999 78888888888877652211100
Q ss_pred -------------cchhhhcccc--------chhhhhhhhchHHHHHHHHHHhhccCCCCCCCCCCHHHHHHH
Q 040925 769 -------------SLLMEVMTNN--------SMIQEDKRVKTEECLNAIIRTGVLCSMESPFERMDMRDVVAK 820 (833)
Q Consensus 769 -------------~~~~~~~~~~--------~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~ 820 (833)
.......... .............+++.+.+++.+||+.||++|||++|+++.
T Consensus 210 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~h 282 (324)
T 3mtl_A 210 LHFIFRILGTPTEETWPGILSNEEFKTYNYPKYRAEALLSHAPRLDSDGADLLTKLLQFEGRNRISAEDAMKH 282 (324)
T ss_dssp HHHHHHHHCCCCTTTSTTGGGCHHHHHTCCCCCCCCCHHHHCTTSCHHHHHHHHHHSCSSGGGSCCHHHHTTS
T ss_pred HHHHHHHhCCCChHhchhhhcchhhcccccccccchhhhhhcCCCCHHHHHHHHHHcCcCcccCCCHHHHhcC
Confidence 0000000000 000000001112345678899999999999999999999874
No 213
>1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A {Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A* 2p4i_A* 3l8p_A* 2wqb_A*
Probab=100.00 E-value=1.7e-37 Score=332.66 Aligned_cols=262 Identities=26% Similarity=0.389 Sum_probs=203.2
Q ss_pred cCCccCceeccCcceEEEEEEECCCceEE--EEEEeecc-CCcchhHHHHHHHHHhhc-CCCccceEeeEeecCCCCCCc
Q 040925 531 GEFSSSNMIGQGSFGYVYKGTLGEDEMIV--AVKVINLK-YKGASRSFVAECEALRNI-RHRNLIKIITICSSTDFKGTD 606 (833)
Q Consensus 531 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~v--avK~~~~~-~~~~~~~~~~E~~~l~~l-~h~niv~~~~~~~~~~~~~~~ 606 (833)
++|++.+.||+|+||.||+|++..++..+ |+|.++.. .....+.+.+|+++++++ +||||+++++++...+
T Consensus 25 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~~----- 99 (327)
T 1fvr_A 25 NDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINLLGACEHRG----- 99 (327)
T ss_dssp GGCEEEEEEECGGGCEEEEEEEEETTEEEEEEEEEEECC------CHHHHHHHHHTTCCCCTTBCCEEEEEEETT-----
T ss_pred HHccceeeeecCCCceEEEEEEccCCcccceeeeeeccccchHHHHHHHHHHHHHHhccCCCchhhhceeeeeCC-----
Confidence 57999999999999999999998788755 99998743 233456789999999999 8999999999986654
Q ss_pred eEeEEEEecCCCChhhhhccCCCc----------cccccCCHHHHHHHHHHHHHHHHHHhhcCCCCceeeCCCCCCeeec
Q 040925 607 FKAFVFEYMENGSLKDWLHQSDDQ----------VEVCKLSLIQRVNIAIDVASAMEYLHHHCQPPMVHGDLKPSNVLLD 676 (833)
Q Consensus 607 ~~~lv~e~~~~gsL~~~l~~~~~~----------~~~~~l~~~~~~~i~~qi~~gL~~LH~~~~~~ivH~Dlkp~NIll~ 676 (833)
..++||||+++|+|.+++...... .....+++.+++.++.|++.||+|||+. ||+||||||+||+++
T Consensus 100 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~dlkp~NIl~~ 176 (327)
T 1fvr_A 100 YLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLSQK---QFIHRDLAARNILVG 176 (327)
T ss_dssp EEEEEECCCTTCBHHHHHHTTCHHHHCHHHHHHTTBSCSSCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEC
T ss_pred ceEEEEecCCCCCHHHHHHhcccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHhC---CccCCCCccceEEEc
Confidence 899999999999999999865410 0112689999999999999999999999 999999999999999
Q ss_pred CCCcEEEcccccccccCcccccccccCCCccccccccccccCccccCCCCCCcccccccCCcCCCccccCCccHHHHHH-
Q 040925 677 HDMVAHVCDFGLAKFLSDHQLDTAVKTPSSSIGLKGTVGYVAPEYGMGSEASMTGDIFTGRRPIDAVFNEGHSLHEFAK- 755 (833)
Q Consensus 677 ~~~~~kL~DfG~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~s~~~~~~~~~~~g~~l~~~~~- 755 (833)
.++.+||+|||+++....... .....+|+.|+|||++.+..++.++|||| .|++++++++
T Consensus 177 ~~~~~kL~Dfg~~~~~~~~~~---------~~~~~~~~~y~aPE~~~~~~~~~~~Di~s----------lG~il~ellt~ 237 (327)
T 1fvr_A 177 ENYVAKIADFGLSRGQEVYVK---------KTMGRLPVRWMAIESLNYSVYTTNSDVWS----------YGVLLWEIVSL 237 (327)
T ss_dssp GGGCEEECCTTCEESSCEECC---------C----CCTTTCCHHHHHHCEECHHHHHHH----------HHHHHHHHHTT
T ss_pred CCCeEEEcccCcCcccccccc---------ccCCCCCccccChhhhccccCCchhcchH----------HHHHHHHHHcC
Confidence 999999999999974432111 11234788999999998888999999999 7788888887
Q ss_pred HhCCCcccccccccchhhhccccchhhhhhhhchHHHHHHHHHHhhccCCCCCCCCCCHHHHHHHHHHhhhh
Q 040925 756 TALPEKVMEIVDPSLLMEVMTNNSMIQEDKRVKTEECLNAIIRTGVLCSMESPFERMDMRDVVAKLCHTRET 827 (833)
Q Consensus 756 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~i~~~ 827 (833)
+..|+...... ... ..+.... ....+..+++.+.+++.+||..||++|||++|+++.|..+.+.
T Consensus 238 g~~pf~~~~~~--~~~-~~~~~~~-----~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~~L~~~~~~ 301 (327)
T 1fvr_A 238 GGTPYCGMTCA--ELY-EKLPQGY-----RLEKPLNCDDEVYDLMRQCWREKPYERPSFAQILVSLNRMLEE 301 (327)
T ss_dssp SCCTTTTCCHH--HHH-HHGGGTC-----CCCCCTTBCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHS
T ss_pred CCCCCCCCcHH--HHH-HHhhcCC-----CCCCCCCCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHHh
Confidence 77776422111 010 1111000 0011223456789999999999999999999999999998764
No 214
>3qyz_A Mitogen-activated protein kinase 1; transferase, serine/threonine-protein kinase, ATP-binding CE phosphorylation; HET: CME Z8B SO4; 1.46A {Rattus norvegicus} PDB: 2fys_B 1erk_A* 3qyi_A* 3erk_A* 3qyw_A* 4erk_A* 4gsb_A* 4gt3_A* 4gva_A* 2z7l_A* 2erk_A* 1gol_A* 2gph_A 3zu7_A 3zuv_A* 3o71_A 3r63_A 3c9w_A* 2y9q_A* 4fmq_A* ...
Probab=100.00 E-value=4.7e-37 Score=334.23 Aligned_cols=266 Identities=21% Similarity=0.243 Sum_probs=204.9
Q ss_pred HhcCCccCceeccCcceEEEEEEECCCceEEEEEEeeccCC-cchhHHHHHHHHHhhcCCCccceEeeEeecCCCCCCce
Q 040925 529 ATGEFSSSNMIGQGSFGYVYKGTLGEDEMIVAVKVINLKYK-GASRSFVAECEALRNIRHRNLIKIITICSSTDFKGTDF 607 (833)
Q Consensus 529 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~-~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~ 607 (833)
..++|++.+.||+|+||.||+|++..+++.||||++..... ...+.+.+|++++++++||||+++++++..........
T Consensus 25 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~ 104 (364)
T 3qyz_A 25 VGPRYTNLSYIGEGAYGMVCSAYDNLNKVRVAIKKISPFEHQTYCQRTLREIKILLRFRHENIIGINDIIRAPTIEQMKD 104 (364)
T ss_dssp CTTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCTTCHHHHHHHHHHHHHHHHCCCTTBCCCCEEECCSSTTTCCC
T ss_pred ccccEEEEEEeecCCCeEEEEEEECCCCeEEEEEEeccccCcHHHHHHHHHHHHHHhcCCCCCccceeEEecCCccccce
Confidence 34689999999999999999999999999999999974332 23467889999999999999999999987765555567
Q ss_pred EeEEEEecCCCChhhhhccCCCccccccCCHHHHHHHHHHHHHHHHHHhhcCCCCceeeCCCCCCeeecCCCcEEEcccc
Q 040925 608 KAFVFEYMENGSLKDWLHQSDDQVEVCKLSLIQRVNIAIDVASAMEYLHHHCQPPMVHGDLKPSNVLLDHDMVAHVCDFG 687 (833)
Q Consensus 608 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~gL~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kL~DfG 687 (833)
.++||||++ |+|.+++... .+++.+++.++.|++.||+|||+. ||+||||||+||+++.++.+||+|||
T Consensus 105 ~~iv~e~~~-~~L~~~l~~~-------~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dikp~NIl~~~~~~~kl~Dfg 173 (364)
T 3qyz_A 105 VYIVQDLME-TDLYKLLKTQ-------HLSNDHICYFLYQILRGLKYIHSA---NVLHRDLKPSNLLLNTTCDLKICDFG 173 (364)
T ss_dssp EEEEEECCS-EEHHHHHHHC-------CCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTCCEEECCCT
T ss_pred EEEEEcccC-cCHHHHHHhC-------CCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCChHhEEECCCCCEEEEeCc
Confidence 899999997 5999998753 589999999999999999999999 99999999999999999999999999
Q ss_pred cccccCcccccccccCCCccccccccccccCccccCC-CCCCcccccccCCcCCCccccCCccHHHHHHHhCCCcccccc
Q 040925 688 LAKFLSDHQLDTAVKTPSSSIGLKGTVGYVAPEYGMG-SEASMTGDIFTGRRPIDAVFNEGHSLHEFAKTALPEKVMEIV 766 (833)
Q Consensus 688 ~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Di~s~~~~~~~~~~~g~~l~~~~~~~~p~~~~~~~ 766 (833)
+++......... .......||+.|+|||++.+ ..++.++|||| .|+++++++++..|+......
T Consensus 174 ~a~~~~~~~~~~-----~~~~~~~gt~~y~aPE~~~~~~~~~~~~Diws----------lG~il~ell~g~~pf~~~~~~ 238 (364)
T 3qyz_A 174 LARVADPDHDHT-----GFLTEYVATRWYRAPEIMLNSKGYTKSIDIWS----------VGCILAEMLSNRPIFPGKHYL 238 (364)
T ss_dssp TCEECCGGGCBC-----CTTCCCCSCGGGCCHHHHHTBCSCSTHHHHHH----------HHHHHHHHHHSSCSSCCSSGG
T ss_pred ceEecCCCCCcc-----ccccccccccCCCCCHHhcCCCCCCcchhHHH----------HHHHHHHHHHCCCCCCCCChH
Confidence 998765432211 11233579999999998654 45899999999 888899999998887532211
Q ss_pred cccchh-hhccccc---------------------hhhhhhhhchHHHHHHHHHHhhccCCCCCCCCCCHHHHHHH
Q 040925 767 DPSLLM-EVMTNNS---------------------MIQEDKRVKTEECLNAIIRTGVLCSMESPFERMDMRDVVAK 820 (833)
Q Consensus 767 ~~~~~~-~~~~~~~---------------------~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~ 820 (833)
+..... ....... ............++..+.+++.+||+.||++|||++|+++.
T Consensus 239 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~h 314 (364)
T 3qyz_A 239 DQLNHILGILGSPSQEDLNCIINLKARNYLLSLPHKNKVPWNRLFPNADSKALDLLDKMLTFNPHKRIEVEQALAH 314 (364)
T ss_dssp GHHHHHHHHHCSCCHHHHHTCCCHHHHHHHHTSCCCCCCCHHHHCTTSCHHHHHHHHHHTCSSTTTSCCHHHHHTS
T ss_pred HHHHHHHHHhCCCCHHHHHHhhhhhHHHHHHhcCCccCCCHHHhCCCCCHHHHHHHHHHcCCChhhCCCHHHHhcC
Confidence 110000 0000000 00000000112245678899999999999999999999874
No 215
>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens}
Probab=100.00 E-value=2.8e-37 Score=356.95 Aligned_cols=261 Identities=21% Similarity=0.317 Sum_probs=201.9
Q ss_pred CCccCc-eeccCcceEEEEEEEC--CCceEEEEEEeeccC-CcchhHHHHHHHHHhhcCCCccceEeeEeecCCCCCCce
Q 040925 532 EFSSSN-MIGQGSFGYVYKGTLG--EDEMIVAVKVINLKY-KGASRSFVAECEALRNIRHRNLIKIITICSSTDFKGTDF 607 (833)
Q Consensus 532 ~y~~~~-~lg~G~~g~Vy~~~~~--~~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~ 607 (833)
++.+.+ .||+|+||.||+|.+. .++..||||+++... ....+.+.+|++++++++|||||++++++... .
T Consensus 336 ~~~~~~~~LG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~E~~il~~l~hpniv~l~~~~~~~------~ 409 (613)
T 2ozo_A 336 NLLIADIELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIGVCQAE------A 409 (613)
T ss_dssp SEEEEEEEEEECSSSEEEEEEEECSSCEEEEEEEECCCCCSSTTHHHHHHHHHHHTTCCCTTBCCEEEEEESS------S
T ss_pred ceeEcCcEEecCCCcEEEEEEEecCCCcEEEEEEEcCCCCChHHHHHHHHHHHHHHhCCCCCEeeEEEEeccC------C
Confidence 444445 7999999999999875 356789999997543 23457899999999999999999999998542 5
Q ss_pred EeEEEEecCCCChhhhhccCCCccccccCCHHHHHHHHHHHHHHHHHHhhcCCCCceeeCCCCCCeeecCCCcEEEcccc
Q 040925 608 KAFVFEYMENGSLKDWLHQSDDQVEVCKLSLIQRVNIAIDVASAMEYLHHHCQPPMVHGDLKPSNVLLDHDMVAHVCDFG 687 (833)
Q Consensus 608 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~gL~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kL~DfG 687 (833)
.++||||+++|+|.+++..... .+++.+++.++.||+.||+|||++ +|+||||||+||+++.++.+||+|||
T Consensus 410 ~~lv~E~~~~g~L~~~l~~~~~-----~l~~~~~~~i~~qi~~~L~~LH~~---~iiHrDlkp~NILl~~~~~vkL~DFG 481 (613)
T 2ozo_A 410 LMLVMEMAGGGPLHKFLVGKRE-----EIPVSNVAELLHQVSMGMKYLEEK---NFVHRNLAARNVLLVNRHYAKISDFG 481 (613)
T ss_dssp EEEEEECCTTCBHHHHHTTCTT-----TSCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEEEETTEEEECCCS
T ss_pred eEEEEEeCCCCcHHHHHhhccC-----CCCHHHHHHHHHHHHHHHHHHHHC---CEEcCcCCHHHEEEcCCCcEEEeecc
Confidence 8999999999999999976432 689999999999999999999999 99999999999999999999999999
Q ss_pred cccccCcccccccccCCCccccccccccccCccccCCCCCCcccccccCCcCCCccccCCccHHHHHH-HhCCCcccccc
Q 040925 688 LAKFLSDHQLDTAVKTPSSSIGLKGTVGYVAPEYGMGSEASMTGDIFTGRRPIDAVFNEGHSLHEFAK-TALPEKVMEIV 766 (833)
Q Consensus 688 ~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~s~~~~~~~~~~~g~~l~~~~~-~~~p~~~~~~~ 766 (833)
+|+.......... ......+|+.|+|||++.+..++.++|||| +|++++++++ +..|+.....
T Consensus 482 la~~~~~~~~~~~-----~~~~~~~~~~y~APE~~~~~~~~~~sDvwS----------lGv~l~ellt~G~~Pf~~~~~- 545 (613)
T 2ozo_A 482 LSKALGADDSYYT-----ARSAGKWPLKWYAPECINFRKFSSRSDVWS----------YGVTMWEALSYGQKPYKKMKG- 545 (613)
T ss_dssp TTTTCC-------------------CCTTSCHHHHHHCCCCHHHHHHH----------HHHHHHHHHTTSCCTTTTCCS-
T ss_pred CcccccCCCceee-----eccCCCCccceeCHhhhcCCCCCcHHHHHH----------HHHHHHHHHHCCCCCCCCCCH-
Confidence 9987654321110 111224678999999999889999999999 7888888887 7777653221
Q ss_pred cccchhhhccccchhhhhhhhchHHHHHHHHHHhhccCCCCCCCCCCHHHHHHHHHHhhhhhh
Q 040925 767 DPSLLMEVMTNNSMIQEDKRVKTEECLNAIIRTGVLCSMESPFERMDMRDVVAKLCHTRETFL 829 (833)
Q Consensus 767 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~i~~~~~ 829 (833)
........... ....+..+++.+.+++.+||..||++|||+++|++.|+.+..+..
T Consensus 546 -~~~~~~i~~~~------~~~~p~~~~~~l~~li~~cl~~dP~~RPs~~~l~~~L~~~~~~~~ 601 (613)
T 2ozo_A 546 -PEVMAFIEQGK------RMECPPECPPELYALMSDCWIYKWEDRPDFLTVEQRMRACYYSLA 601 (613)
T ss_dssp -HHHHHHHHTTC------CCCCCTTCCHHHHHHHHHTTCSSTTTSCCHHHHHHHHHHHHHHHS
T ss_pred -HHHHHHHHcCC------CCCCCCcCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHHHHhc
Confidence 11111111110 011223467789999999999999999999999999999876543
No 216
>3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast); two-LOBE protein kinase fold, ATP-binding, nucleotid binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A* 3ggf_A* 2xik_A*
Probab=100.00 E-value=3.1e-37 Score=327.05 Aligned_cols=249 Identities=25% Similarity=0.346 Sum_probs=203.7
Q ss_pred cCCccCceeccCcceEEEEEEECCCceEEEEEEeeccC-CcchhHHHHHHHHHhhcCCCccceEeeEeecCCCCCCceEe
Q 040925 531 GEFSSSNMIGQGSFGYVYKGTLGEDEMIVAVKVINLKY-KGASRSFVAECEALRNIRHRNLIKIITICSSTDFKGTDFKA 609 (833)
Q Consensus 531 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~~ 609 (833)
+.|++.+.||+|+||.||+|++..+++.||||+++... ....+.+.+|+.++++++||||+++++++.... ..+
T Consensus 22 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~-----~~~ 96 (303)
T 3a7i_A 22 ELFTKLEKIGKGSFGEVFKGIDNRTQKVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYVTKYYGSYLKDT-----KLW 96 (303)
T ss_dssp GTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEETTTCSTTHHHHHHHHHHHHHCCCTTBCCEEEEEEETT-----EEE
T ss_pred HHHHHhhhhcccCCeEEEEEEECCCCcEEEEEEecccccHHHHHHHHHHHHHHHhCCCCCEeEEEEEEecCC-----eEE
Confidence 46999999999999999999999899999999997543 334578999999999999999999999986654 899
Q ss_pred EEEEecCCCChhhhhccCCCccccccCCHHHHHHHHHHHHHHHHHHhhcCCCCceeeCCCCCCeeecCCCcEEEcccccc
Q 040925 610 FVFEYMENGSLKDWLHQSDDQVEVCKLSLIQRVNIAIDVASAMEYLHHHCQPPMVHGDLKPSNVLLDHDMVAHVCDFGLA 689 (833)
Q Consensus 610 lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~gL~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kL~DfG~a 689 (833)
+||||+++++|.+++... .+++..++.++.|++.||.|||+. ||+||||||+||+++.++.+||+|||++
T Consensus 97 lv~e~~~~~~L~~~~~~~-------~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~kl~Dfg~~ 166 (303)
T 3a7i_A 97 IIMEYLGGGSALDLLEPG-------PLDETQIATILREILKGLDYLHSE---KKIHRDIKAANVLLSEHGEVKLADFGVA 166 (303)
T ss_dssp EEEECCTTEEHHHHHTTS-------CCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTSCEEECCCTTC
T ss_pred EEEEeCCCCcHHHHHhcC-------CCCHHHHHHHHHHHHHHHHHHHHC---CCccCCCChheEEECCCCCEEEeecccc
Confidence 999999999999999753 689999999999999999999999 9999999999999999999999999999
Q ss_pred cccCcccccccccCCCccccccccccccCccccCCCCCCcccccccCCcCCCccccCCccHHHHHHHhCCCccccccccc
Q 040925 690 KFLSDHQLDTAVKTPSSSIGLKGTVGYVAPEYGMGSEASMTGDIFTGRRPIDAVFNEGHSLHEFAKTALPEKVMEIVDPS 769 (833)
Q Consensus 690 ~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~s~~~~~~~~~~~g~~l~~~~~~~~p~~~~~~~~~~ 769 (833)
........ ......||+.|+|||++.+..++.++|||| +|+++++++++..|+.......
T Consensus 167 ~~~~~~~~--------~~~~~~~~~~y~aPE~~~~~~~~~~~Di~s----------lG~il~~l~~g~~p~~~~~~~~-- 226 (303)
T 3a7i_A 167 GQLTDTQI--------KRNTFVGTPFWMAPEVIKQSAYDSKADIWS----------LGITAIELARGEPPHSELHPMK-- 226 (303)
T ss_dssp EECBTTBC--------CBCCCCSCGGGCCHHHHTTCCBCTHHHHHH----------HHHHHHHHHHSSCTTTTSCHHH--
T ss_pred eecCcccc--------ccCccCCCcCccCHHHHhcCCCCchhhhHH----------HHHHHHHHccCCCCCCCcCHHH--
Confidence 87654321 112346999999999999999999999999 8888999999988875321110
Q ss_pred chhhhccccchhhhhhhhchHHHHHHHHHHhhccCCCCCCCCCCHHHHHHH
Q 040925 770 LLMEVMTNNSMIQEDKRVKTEECLNAIIRTGVLCSMESPFERMDMRDVVAK 820 (833)
Q Consensus 770 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~ 820 (833)
......... .......++..+.+++.+||..||++|||++|+++.
T Consensus 227 ~~~~~~~~~------~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~ 271 (303)
T 3a7i_A 227 VLFLIPKNN------PPTLEGNYSKPLKEFVEACLNKEPSFRPTAKELLKH 271 (303)
T ss_dssp HHHHHHHSC------CCCCCSSCCHHHHHHHHHHCCSSGGGSCCHHHHTTC
T ss_pred HHHHhhcCC------CCCCccccCHHHHHHHHHHcCCChhhCcCHHHHhhC
Confidence 000000000 001112345678899999999999999999999875
No 217
>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A*
Probab=100.00 E-value=3.8e-37 Score=348.67 Aligned_cols=252 Identities=21% Similarity=0.277 Sum_probs=198.3
Q ss_pred hcCCccCceeccCcceEEEEEEECCCceEEEEEEeeccC--CcchhHHHHHHHHHhhcCCCccceEeeEeecCCCCCCce
Q 040925 530 TGEFSSSNMIGQGSFGYVYKGTLGEDEMIVAVKVINLKY--KGASRSFVAECEALRNIRHRNLIKIITICSSTDFKGTDF 607 (833)
Q Consensus 530 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~ 607 (833)
.++|++.+.||+|+||.||+|++..++..||+|+++... ......+.+|+.+++.++||||+++++++.... .
T Consensus 36 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~-----~ 110 (494)
T 3lij_A 36 SEMYQRVKKLGSGAYGEVLLCRDKVTHVERAIKIIRKTSVSTSSNSKLLEEVAVLKLLDHPNIMKLYDFFEDKR-----N 110 (494)
T ss_dssp HHHEEEEEEEECC---EEEEEEETTTCCEEEEEEEEC-----CTTHHHHHHHHHHTTCCCTTBCCEEEEEECSS-----E
T ss_pred hcCeEEeeEEecCCCEEEEEEEECCCCcEEEEEEEeccccCchHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCC-----E
Confidence 457999999999999999999999999999999997542 334567899999999999999999999976554 8
Q ss_pred EeEEEEecCCCChhhhhccCCCccccccCCHHHHHHHHHHHHHHHHHHhhcCCCCceeeCCCCCCeeecC---CCcEEEc
Q 040925 608 KAFVFEYMENGSLKDWLHQSDDQVEVCKLSLIQRVNIAIDVASAMEYLHHHCQPPMVHGDLKPSNVLLDH---DMVAHVC 684 (833)
Q Consensus 608 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~gL~~LH~~~~~~ivH~Dlkp~NIll~~---~~~~kL~ 684 (833)
.++|||||++|+|.+++.... .+++..++.++.|++.||+|||+. ||+||||||+||+++. ++.+||+
T Consensus 111 ~~lv~e~~~~g~L~~~~~~~~------~~~~~~~~~i~~qi~~~l~~lH~~---~ivH~Dlkp~Nil~~~~~~~~~~kl~ 181 (494)
T 3lij_A 111 YYLVMECYKGGELFDEIIHRM------KFNEVDAAVIIKQVLSGVTYLHKH---NIVHRDLKPENLLLESKEKDALIKIV 181 (494)
T ss_dssp EEEEEECCCSCBHHHHHHHHS------SCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEESCSSTTCCEEEC
T ss_pred EEEEEecCCCCcHHHHHHHcC------CCCHHHHHHHHHHHHHHHHHHHHC---CceeccCChhhEEEeCCCCCCcEEEE
Confidence 999999999999999887654 689999999999999999999999 9999999999999976 4569999
Q ss_pred ccccccccCcccccccccCCCccccccccccccCccccCCCCCCcccccccCCcCCCccccCCccHHHHHHHhCCCcccc
Q 040925 685 DFGLAKFLSDHQLDTAVKTPSSSIGLKGTVGYVAPEYGMGSEASMTGDIFTGRRPIDAVFNEGHSLHEFAKTALPEKVME 764 (833)
Q Consensus 685 DfG~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~s~~~~~~~~~~~g~~l~~~~~~~~p~~~~~ 764 (833)
|||+|+...... ......||+.|+|||++. ..++.++|||| .|+++|+++++..|+....
T Consensus 182 DfG~a~~~~~~~---------~~~~~~gt~~y~aPE~l~-~~~~~~~Diws----------lG~il~~ll~g~~pf~~~~ 241 (494)
T 3lij_A 182 DFGLSAVFENQK---------KMKERLGTAYYIAPEVLR-KKYDEKCDVWS----------IGVILFILLAGYPPFGGQT 241 (494)
T ss_dssp CCTTCEECBTTB---------CBCCCCSCTTTCCHHHHT-TCBCTHHHHHH----------HHHHHHHHHHSSCSSCCSS
T ss_pred ECCCCeECCCCc---------cccccCCCcCeeCHHHHc-ccCCCchhHHH----------HHHHHHHHHhCCCCCCCCC
Confidence 999998664422 122356999999999876 46999999999 8889999999999875322
Q ss_pred cccccchhhhccccchhhhhhhhchHHHHHHHHHHhhccCCCCCCCCCCHHHHHHH
Q 040925 765 IVDPSLLMEVMTNNSMIQEDKRVKTEECLNAIIRTGVLCSMESPFERMDMRDVVAK 820 (833)
Q Consensus 765 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~ 820 (833)
. ............... ......+++.+.+++.+||+.||++|||+.|+++.
T Consensus 242 ~--~~~~~~i~~~~~~~~---~~~~~~~s~~~~~li~~~L~~dp~~R~s~~e~l~h 292 (494)
T 3lij_A 242 D--QEILRKVEKGKYTFD---SPEWKNVSEGAKDLIKQMLQFDSQRRISAQQALEH 292 (494)
T ss_dssp H--HHHHHHHHHTCCCCC---SGGGTTSCHHHHHHHHHHTCSSTTTSCCHHHHHTC
T ss_pred H--HHHHHHHHhCCCCCC---chhcccCCHHHHHHHHHHCCCChhhCccHHHHhcC
Confidence 1 111111111111100 11112345678899999999999999999999865
No 218
>3sv0_A Casein kinase I-like; typical kinase domain fold, cytosol, transferase; 2.00A {Oryza sativa japonica group}
Probab=100.00 E-value=6.2e-37 Score=342.10 Aligned_cols=270 Identities=21% Similarity=0.277 Sum_probs=207.4
Q ss_pred hcCCccCceeccCcceEEEEEEECCCceEEEEEEeeccCCcchhHHHHHHHHHhhcCC-CccceEeeEeecCCCCCCceE
Q 040925 530 TGEFSSSNMIGQGSFGYVYKGTLGEDEMIVAVKVINLKYKGASRSFVAECEALRNIRH-RNLIKIITICSSTDFKGTDFK 608 (833)
Q Consensus 530 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h-~niv~~~~~~~~~~~~~~~~~ 608 (833)
.++|++.+.||+|+||.||+|++..+++.||||+++... ....+.+|+++++.++| ++|..+..++... ...
T Consensus 6 ~~~y~i~~~LG~G~fG~Vy~a~~~~~~~~vAvK~~~~~~--~~~~~~~E~~il~~L~~~~~i~~i~~~~~~~-----~~~ 78 (483)
T 3sv0_A 6 GNKFRLGRKIGSGSFGEIYLGTNIQTNEEVAIKLENVKT--KHPQLLYESKIYRILQGGTGIPNVRWFGVEG-----DYN 78 (483)
T ss_dssp TTTEECCCCCEECSSCEEEEEEETTTCCEEEEEEEETTC--SSCCHHHHHHHHHHTTTSTTCCCEEEEEEET-----TEE
T ss_pred CCcEEEEEEEeeCCCEEEEEEEECCCCcEEEEEEecccc--ccHHHHHHHHHHHHhcCCCCCCeEEEEEeeC-----CEE
Confidence 368999999999999999999999899999999986443 33568899999999987 4555555554433 478
Q ss_pred eEEEEecCCCChhhhhccCCCccccccCCHHHHHHHHHHHHHHHHHHhhcCCCCceeeCCCCCCeee---cCCCcEEEcc
Q 040925 609 AFVFEYMENGSLKDWLHQSDDQVEVCKLSLIQRVNIAIDVASAMEYLHHHCQPPMVHGDLKPSNVLL---DHDMVAHVCD 685 (833)
Q Consensus 609 ~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~gL~~LH~~~~~~ivH~Dlkp~NIll---~~~~~~kL~D 685 (833)
++||||+ +++|.+++..... .+++.+++.|+.||+.||+|||+. +||||||||+|||+ +.++.+||+|
T Consensus 79 ~lvme~~-g~sL~~ll~~~~~-----~l~~~~~~~i~~qi~~aL~yLH~~---gIvHrDIKP~NILl~~~~~~~~vkL~D 149 (483)
T 3sv0_A 79 VLVMDLL-GPSLEDLFNFCSR-----KLSLKTVLMLADQMINRVEFVHSK---SFLHRDIKPDNFLMGLGRRANQVYIID 149 (483)
T ss_dssp EEEEECC-CCBHHHHHHHTTT-----CCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECCGGGTTCEEECC
T ss_pred EEEEECC-CCCHHHHHHhhcC-----CCCHHHHHHHHHHHHHHHHHHHHC---CEeecccCcceEEEecCCCCCeEEEEe
Confidence 9999999 8999999985432 689999999999999999999999 99999999999999 5889999999
Q ss_pred cccccccCcccccccccCCCccccccccccccCccccCCCCCCcccccccCCcCCCccccCCccHHHHHHHhCCCccccc
Q 040925 686 FGLAKFLSDHQLDTAVKTPSSSIGLKGTVGYVAPEYGMGSEASMTGDIFTGRRPIDAVFNEGHSLHEFAKTALPEKVMEI 765 (833)
Q Consensus 686 fG~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~s~~~~~~~~~~~g~~l~~~~~~~~p~~~~~~ 765 (833)
||+++.+......... .........||+.|+|||++.+..++.++|||| +|+++|+++++..|+.....
T Consensus 150 FGla~~~~~~~~~~~~-~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDvwS----------lGvil~elltG~~Pf~~~~~ 218 (483)
T 3sv0_A 150 FGLAKKYRDTSTHQHI-PYRENKNLTGTARYASVNTHLGIEQSRRDDLES----------LGYVLMYFLRGSLPWQGLKA 218 (483)
T ss_dssp CTTCEECBCTTTCCBC-CCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHH----------HHHHHHHHHHSSCTTSSCCC
T ss_pred CCcceeccCCcccccc-ccccccccCCCccccCHHHhcCCCCChHHHHHH----------HHHHHHHHHhCCCCCccccc
Confidence 9999876543321110 111223467999999999999999999999999 88899999999999863222
Q ss_pred ccccchhhhccccchhhhhhhhchHHHHHHHHHHhhccCCCCCCCCCCHHHHHHHHHHhhhh
Q 040925 766 VDPSLLMEVMTNNSMIQEDKRVKTEECLNAIIRTGVLCSMESPFERMDMRDVVAKLCHTRET 827 (833)
Q Consensus 766 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~i~~~ 827 (833)
.+.......+..... ..........++.++.+++..||..||++||++++|++.|+.+...
T Consensus 219 ~~~~~~~~~i~~~~~-~~~~~~l~~~~p~~l~~li~~cl~~dP~~RPs~~el~~~L~~l~~~ 279 (483)
T 3sv0_A 219 GTKKQKYEKISEKKV-ATSIEALCRGYPTEFASYFHYCRSLRFDDKPDYSYLKRLFRDLFIR 279 (483)
T ss_dssp SSHHHHHHHHHHHHH-HSCHHHHHTTSCHHHHHHHHHHHTCCTTCCCCHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHhhccc-cccHHHHhcCCcHHHHHHHHHHhcCChhhCcCHHHHHHHHHHHHHH
Confidence 111111111100000 0001111233467899999999999999999999999999998653
No 219
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=1.2e-35 Score=321.30 Aligned_cols=307 Identities=24% Similarity=0.354 Sum_probs=215.5
Q ss_pred CCCCCCCCEEEcCCCcccccCCccccCCCCCcEEECCCcccccccCchhhcCCCCccEEEccCCcceeeCCccccCCCCC
Q 040925 43 LGLLRNLVSLNVAENKFSGMFPRSICNISSLELIQLALNRFSGNLPFDIVVNLPNLKALAIGGNNFFGSIPYSLSNASNL 122 (833)
Q Consensus 43 ~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 122 (833)
+..+++|++|++++|.++. +| .|..+++|++|++++|+++ .++. |.++++|++|+|++|.++. + ..|.++++|
T Consensus 40 ~~~l~~L~~L~l~~~~i~~-~~-~~~~~~~L~~L~l~~n~i~-~~~~--~~~l~~L~~L~L~~n~i~~-~-~~~~~l~~L 112 (347)
T 4fmz_A 40 QEELESITKLVVAGEKVAS-IQ-GIEYLTNLEYLNLNGNQIT-DISP--LSNLVKLTNLYIGTNKITD-I-SALQNLTNL 112 (347)
T ss_dssp HHHHTTCSEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCC-C-GGGTTCTTC
T ss_pred chhcccccEEEEeCCcccc-ch-hhhhcCCccEEEccCCccc-cchh--hhcCCcCCEEEccCCcccC-c-hHHcCCCcC
Confidence 4567788888888888874 33 3777888888888888887 5554 6777888888888887764 2 357777888
Q ss_pred cEEEcccCccccccCcCccCCCcCceEecccccCCCCCCCCcccccccCCCCCCCEEEccCCcCcccCChhHhhhccccc
Q 040925 123 ELLDLSVNQFKGNVSIDFSSLKNLLWLNLEQNNLGTGTATDLDFVTFLTNCSSLKALSLADNQFGGELPHSIANLSSTVI 202 (833)
Q Consensus 123 ~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~l~ 202 (833)
++|+|++|+++++++ +..+++|++|++++|..... +..+..+++|++|++++|++.+
T Consensus 113 ~~L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~-------~~~~~~l~~L~~L~l~~~~~~~-------------- 169 (347)
T 4fmz_A 113 RELYLNEDNISDISP--LANLTKMYSLNLGANHNLSD-------LSPLSNMTGLNYLTVTESKVKD-------------- 169 (347)
T ss_dssp SEEECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCC-------CGGGTTCTTCCEEECCSSCCCC--------------
T ss_pred CEEECcCCcccCchh--hccCCceeEEECCCCCCccc-------ccchhhCCCCcEEEecCCCcCC--------------
Confidence 888888887776554 67777777777777743321 1225666777777777776651
Q ss_pred EEEccCccccccCChhhhcCCCCCeEeccCCcccccCCccccCCCCCCEEEcccccCcccCCccccCCCCCCeEEeeccc
Q 040925 203 NFGIGRNQISGTIPPGIRNLVNLIGFGAEENQLHGTIPDAIGELKNLQKLCLFRNFLQGRIPSGLGNLTKLANLELSSNS 282 (833)
Q Consensus 203 ~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 282 (833)
.+. +..+++|+.|++++|++.+..+ +..+++|+.|++++|.+++..+ +..+++|++|++++|+
T Consensus 170 ------------~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~ 232 (347)
T 4fmz_A 170 ------------VTP-IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNK 232 (347)
T ss_dssp ------------CGG-GGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSC
T ss_pred ------------chh-hccCCCCCEEEccCCccccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCc
Confidence 111 5566677777777777764433 6666777777777777764433 6666777777777777
Q ss_pred ccCCCCCCCCCCCccceeecCCceecccCCcccccccccceeeecCCCccCCCCCcccccCCCcCEEeccCCcCCCCCCc
Q 040925 283 LQGNIPSSLGNCQNLMSFTASQNKLTGALPHQLLSITTLSLYLDLSNNLLNGSLPLQVGHLKNLVILDISSNQFSGVIPG 362 (833)
Q Consensus 283 l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~ll~~L~ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~ 362 (833)
+++..+ +..+++|++|++++|.++ +. ..+..+++|++|++++|.+++. .
T Consensus 233 l~~~~~--~~~l~~L~~L~l~~n~l~-------------------------~~--~~~~~l~~L~~L~l~~n~l~~~--~ 281 (347)
T 4fmz_A 233 ITDLSP--LANLSQLTWLEIGTNQIS-------------------------DI--NAVKDLTKLKMLNVGSNQISDI--S 281 (347)
T ss_dssp CCCCGG--GTTCTTCCEEECCSSCCC-------------------------CC--GGGTTCTTCCEEECCSSCCCCC--G
T ss_pred cCCCcc--hhcCCCCCEEECCCCccC-------------------------CC--hhHhcCCCcCEEEccCCccCCC--h
Confidence 664333 556666655555555544 22 3466788888999999988865 4
Q ss_pred cccCCCCCcEEeecCCccccccCccccCCCCCCeEEccCcccCCCchhhhcCCCCCceEECccCcCc
Q 040925 363 TLSTCVCLEYLDISSNSFHGVIPLSLSFLKSIKELNVSSNNLSGQIPEFLKNLSVLEFLSLSYNHFE 429 (833)
Q Consensus 363 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~ 429 (833)
.+..+++|+.|++++|++++..+..+..+++|+.|++++|++++..| +..+++|+.|++++|+++
T Consensus 282 ~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 282 VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp GGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred hhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 58888899999999999888888888888999999999999987666 788889999999998876
No 220
>2h6d_A 5'-AMP-activated protein kinase catalytic subunit alpha-2; ATP-binding, cholesterol biosynthesis, fatty acid biosynthesis;kinase, lipid synthesis; 1.85A {Homo sapiens} PDB: 3aqv_A* 2yza_A*
Probab=100.00 E-value=3.5e-37 Score=321.94 Aligned_cols=249 Identities=27% Similarity=0.389 Sum_probs=195.2
Q ss_pred hcCCccCceeccCcceEEEEEEECCCceEEEEEEeeccC---CcchhHHHHHHHHHhhcCCCccceEeeEeecCCCCCCc
Q 040925 530 TGEFSSSNMIGQGSFGYVYKGTLGEDEMIVAVKVINLKY---KGASRSFVAECEALRNIRHRNLIKIITICSSTDFKGTD 606 (833)
Q Consensus 530 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~ 606 (833)
.++|++.+.||+|+||.||+|++..+++.||||+++... ....+.+.+|+++++.++||||+++++++...+
T Consensus 10 ~~~y~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~----- 84 (276)
T 2h6d_A 10 IGHYVLGDTLGVGTFGKVKIGEHQLTGHKVAVKILNRQKIRSLDVVGKIKREIQNLKLFRHPHIIKLYQVISTPT----- 84 (276)
T ss_dssp ETTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSS-----
T ss_pred eccEEEEeeecCCCCeEEEEEEECCCCceEEEEEeccccccchhHHHHHHHHHHHHhcCCCCCEeEEEEEEecCC-----
Confidence 468999999999999999999999899999999996432 233467899999999999999999999976654
Q ss_pred eEeEEEEecCCCChhhhhccCCCccccccCCHHHHHHHHHHHHHHHHHHhhcCCCCceeeCCCCCCeeecCCCcEEEccc
Q 040925 607 FKAFVFEYMENGSLKDWLHQSDDQVEVCKLSLIQRVNIAIDVASAMEYLHHHCQPPMVHGDLKPSNVLLDHDMVAHVCDF 686 (833)
Q Consensus 607 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~gL~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kL~Df 686 (833)
..++||||+++++|.+++.... .+++..++.++.|++.||+|||+. +|+||||||+||+++.++.+||+||
T Consensus 85 ~~~lv~e~~~~~~L~~~l~~~~------~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~~l~df 155 (276)
T 2h6d_A 85 DFFMVMEYVSGGELFDYICKHG------RVEEMEARRLFQQILSAVDYCHRH---MVVHRDLKPENVLLDAHMNAKIADF 155 (276)
T ss_dssp EEEEEEECCCSCBHHHHHHHHC------SCCHHHHHHHHHHHHHHHHHHHHH---CSSCCCCCGGGEEECTTSCEEECCC
T ss_pred eEEEEEeccCCCcHHHHHhccC------CCCHHHHHHHHHHHHHHHHHHHHC---CCccCCCChhhEEECCCCCEEEeec
Confidence 8999999999999999997654 689999999999999999999999 9999999999999999999999999
Q ss_pred ccccccCcccccccccCCCccccccccccccCccccCCCCC-CcccccccCCcCCCccccCCccHHHHHHHhCCCccccc
Q 040925 687 GLAKFLSDHQLDTAVKTPSSSIGLKGTVGYVAPEYGMGSEA-SMTGDIFTGRRPIDAVFNEGHSLHEFAKTALPEKVMEI 765 (833)
Q Consensus 687 G~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~-~~~~Di~s~~~~~~~~~~~g~~l~~~~~~~~p~~~~~~ 765 (833)
|++........ .....||+.|+|||++.+..+ +.++|||| .|+++++++++..|+.....
T Consensus 156 g~~~~~~~~~~---------~~~~~~~~~y~aPE~~~~~~~~~~~~Di~s----------lG~~l~~l~~g~~p~~~~~~ 216 (276)
T 2h6d_A 156 GLSNMMSDGEF---------LRTSCGSPNYAAPEVISGRLYAGPEVDIWS----------CGVILYALLCGTLPFDDEHV 216 (276)
T ss_dssp CGGGCCCC----------------------CCTGGGTTSCCCHHHHHHHH----------HHHHHHHHHHSSCSSCCSSH
T ss_pred ccccccCCCcc---------eecccCCccccCHHHHcCCCCCCccchHHH----------HHHHHHHHHhCCCCCCCCcH
Confidence 99986644221 112458999999999888765 68999999 88889999999888753211
Q ss_pred ccccchhhhccccchhhhhhhhchHHHHHHHHHHhhccCCCCCCCCCCHHHHHHH
Q 040925 766 VDPSLLMEVMTNNSMIQEDKRVKTEECLNAIIRTGVLCSMESPFERMDMRDVVAK 820 (833)
Q Consensus 766 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~ 820 (833)
........... ...+..++..+.+++.+||+.||++|||++|+++.
T Consensus 217 --~~~~~~~~~~~-------~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~~l~h 262 (276)
T 2h6d_A 217 --PTLFKKIRGGV-------FYIPEYLNRSVATLLMHMLQVDPLKRATIKDIREH 262 (276)
T ss_dssp --HHHHHHHHHCC-------CCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHS
T ss_pred --HHHHHHhhcCc-------ccCchhcCHHHHHHHHHHccCChhhCCCHHHHHhC
Confidence 01111100000 01112245678899999999999999999999885
No 221
>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A*
Probab=100.00 E-value=1.9e-37 Score=350.72 Aligned_cols=252 Identities=24% Similarity=0.319 Sum_probs=204.0
Q ss_pred hcCCccCceeccCcceEEEEEEECCCceEEEEEEeeccC---CcchhHHHHHHHHHhhcCCCccceEeeEeecCCCCCCc
Q 040925 530 TGEFSSSNMIGQGSFGYVYKGTLGEDEMIVAVKVINLKY---KGASRSFVAECEALRNIRHRNLIKIITICSSTDFKGTD 606 (833)
Q Consensus 530 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~ 606 (833)
.++|++.+.||+|+||.||+|++..+++.||||++.... ....+.+.+|++++++++||||+++++++....
T Consensus 25 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~----- 99 (484)
T 3nyv_A 25 SDRYKGQRVLGKGSFGEVILCKDKITGQECAVKVISKRQVKQKTDKESLLREVQLLKQLDHPNIMKLYEFFEDKG----- 99 (484)
T ss_dssp HHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCBSSCHHHHHHHHHHHTTCCCTTBCCEEEEEECSS-----
T ss_pred cCceEEeeEEecCCCEEEEEEEECCCCCEEEEEEEEhhhcccchHHHHHHHHHHHHHhCCCCCCCcEEEEEEeCC-----
Confidence 457999999999999999999999999999999996442 334577999999999999999999999976654
Q ss_pred eEeEEEEecCCCChhhhhccCCCccccccCCHHHHHHHHHHHHHHHHHHhhcCCCCceeeCCCCCCeee---cCCCcEEE
Q 040925 607 FKAFVFEYMENGSLKDWLHQSDDQVEVCKLSLIQRVNIAIDVASAMEYLHHHCQPPMVHGDLKPSNVLL---DHDMVAHV 683 (833)
Q Consensus 607 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~gL~~LH~~~~~~ivH~Dlkp~NIll---~~~~~~kL 683 (833)
..++||||+++|+|.+++.... .+++..++.++.|++.||+|||+. +|+||||||+||++ +.++.+||
T Consensus 100 ~~~lv~e~~~~~~L~~~~~~~~------~~~~~~~~~i~~qi~~~l~~lH~~---~ivH~Dlkp~Nil~~~~~~~~~~kl 170 (484)
T 3nyv_A 100 YFYLVGEVYTGGELFDEIISRK------RFSEVDAARIIRQVLSGITYMHKN---KIVHRDLKPENLLLESKSKDANIRI 170 (484)
T ss_dssp EEEEEECCCCSCBHHHHHHTCS------CCBHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEESSSSTTCCEEE
T ss_pred EEEEEEecCCCCCHHHHHHhcC------CCCHHHHHHHHHHHHHHHHHHHHC---CeeeCCCCHHHEEEecCCCCCcEEE
Confidence 8999999999999999998654 689999999999999999999999 99999999999999 56789999
Q ss_pred cccccccccCcccccccccCCCccccccccccccCccccCCCCCCcccccccCCcCCCccccCCccHHHHHHHhCCCccc
Q 040925 684 CDFGLAKFLSDHQLDTAVKTPSSSIGLKGTVGYVAPEYGMGSEASMTGDIFTGRRPIDAVFNEGHSLHEFAKTALPEKVM 763 (833)
Q Consensus 684 ~DfG~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~s~~~~~~~~~~~g~~l~~~~~~~~p~~~~ 763 (833)
+|||+|+...... ......||+.|+|||++.+ .++.++|||| .|+++|+++++..|+...
T Consensus 171 ~Dfg~a~~~~~~~---------~~~~~~gt~~y~aPE~~~~-~~~~~~Diws----------lG~il~~ll~g~~pf~~~ 230 (484)
T 3nyv_A 171 IDFGLSTHFEASK---------KMKDKIGTAYYIAPEVLHG-TYDEKCDVWS----------TGVILYILLSGCPPFNGA 230 (484)
T ss_dssp CCTTHHHHBCCCC---------SHHHHTTGGGTCCHHHHHT-CCCTHHHHHH----------HHHHHHHHHHSSCSSCCS
T ss_pred EeeeeeEEccccc---------ccccCCCCccccCceeecC-CCCCcceeHH----------HHHHHHHHHHCCCCCCCC
Confidence 9999998654322 1223469999999999876 6999999999 888999999999987632
Q ss_pred ccccccchhhhccccchhhhhhhhchHHHHHHHHHHhhccCCCCCCCCCCHHHHHHH
Q 040925 764 EIVDPSLLMEVMTNNSMIQEDKRVKTEECLNAIIRTGVLCSMESPFERMDMRDVVAK 820 (833)
Q Consensus 764 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~ 820 (833)
... ............. .......+++.+.+++.+||+.||++|||++|+++.
T Consensus 231 ~~~--~~~~~i~~~~~~~---~~~~~~~~s~~~~~li~~~L~~dp~~R~s~~e~l~h 282 (484)
T 3nyv_A 231 NEY--DILKKVEKGKYTF---ELPQWKKVSESAKDLIRKMLTYVPSMRISARDALDH 282 (484)
T ss_dssp SHH--HHHHHHHHCCCCC---CSGGGGGSCHHHHHHHHHHTCSSGGGSCCHHHHHTS
T ss_pred CHH--HHHHHHHcCCCCC---CCcccccCCHHHHHHHHHHCCCChhHCcCHHHHhhC
Confidence 211 1111111111100 011123356678899999999999999999999874
No 222
>1cm8_A Phosphorylated MAP kinase P38-gamma; phosphorylation, transferase; HET: TPO PTR ANP; 2.40A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=5.5e-37 Score=333.14 Aligned_cols=259 Identities=19% Similarity=0.266 Sum_probs=194.0
Q ss_pred hcCCccCceeccCcceEEEEEEECCCceEEEEEEeeccCC--cchhHHHHHHHHHhhcCCCccceEeeEeecCC-CCCCc
Q 040925 530 TGEFSSSNMIGQGSFGYVYKGTLGEDEMIVAVKVINLKYK--GASRSFVAECEALRNIRHRNLIKIITICSSTD-FKGTD 606 (833)
Q Consensus 530 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~--~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~-~~~~~ 606 (833)
.++|++.+.||+|+||.||+|.+..+|+.||||++..... ...+.+.+|++++++++||||+++++++.... .....
T Consensus 24 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~~~~ 103 (367)
T 1cm8_A 24 RAVYRDLQPVGSGAYGAVCSAVDGRTGAKVAIKKLYRPFQSELFAKRAYRELRLLKHMRHENVIGLLDVFTPDETLDDFT 103 (367)
T ss_dssp BSSEEEEEEC------CEEEEEETTTCCEEEEEECSSTTSSHHHHHHHHHHHHHHHHCCBTTBCCCSEEECSCSSTTTCC
T ss_pred cceEEEeEEeeecCCeEEEEEEECCCCCEEEEEEeCccccCHHHHHHHHHHHHHHHhCCCcCCCCceeeEecCCccccCc
Confidence 3679999999999999999999999999999999964322 23467889999999999999999999986543 12224
Q ss_pred eEeEEEEecCCCChhhhhccCCCccccccCCHHHHHHHHHHHHHHHHHHhhcCCCCceeeCCCCCCeeecCCCcEEEccc
Q 040925 607 FKAFVFEYMENGSLKDWLHQSDDQVEVCKLSLIQRVNIAIDVASAMEYLHHHCQPPMVHGDLKPSNVLLDHDMVAHVCDF 686 (833)
Q Consensus 607 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~gL~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kL~Df 686 (833)
..|+||||+ +++|.+++... .+++..+..++.|++.||+|||+. ||+||||||+||+++.++.+||+||
T Consensus 104 ~~~lv~e~~-~~~L~~~~~~~-------~l~~~~~~~~~~qi~~~L~~LH~~---~ivH~Dlkp~NIll~~~~~~kl~Df 172 (367)
T 1cm8_A 104 DFYLVMPFM-GTDLGKLMKHE-------KLGEDRIQFLVYQMLKGLRYIHAA---GIIHRDLKPGNLAVNEDCELKILDF 172 (367)
T ss_dssp CCEEEEECC-SEEHHHHHHHC-------CCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTCCEEECCC
T ss_pred eEEEEEecC-CCCHHHHHhcC-------CCCHHHHHHHHHHHHHHHHHHHHC---CccccCcCHHHEEEcCCCCEEEEee
Confidence 579999999 78999999763 589999999999999999999999 9999999999999999999999999
Q ss_pred ccccccCcccccccccCCCccccccccccccCccccCC-CCCCcccccccCCcCCCccccCCccHHHHHHHhCCCccccc
Q 040925 687 GLAKFLSDHQLDTAVKTPSSSIGLKGTVGYVAPEYGMG-SEASMTGDIFTGRRPIDAVFNEGHSLHEFAKTALPEKVMEI 765 (833)
Q Consensus 687 G~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Di~s~~~~~~~~~~~g~~l~~~~~~~~p~~~~~~ 765 (833)
|+++..... .....||+.|+|||++.+ ..++.++|||| .|+++++++++..|+...+.
T Consensus 173 g~a~~~~~~-----------~~~~~~t~~y~aPE~~~~~~~~~~~~Diws----------lG~il~ell~g~~pf~~~~~ 231 (367)
T 1cm8_A 173 GLARQADSE-----------MTGYVVTRWYRAPEVILNWMRYTQTVDIWS----------VGCIMAEMITGKTLFKGSDH 231 (367)
T ss_dssp TTCEECCSS-----------CCSSCSCGGGCCTHHHHTTTCCCTTHHHHH----------HHHHHHHHHHSSCSSCCSSH
T ss_pred ecccccccc-----------cCcCcCCCCcCCHHHHhCCCCCChhhhHHH----------HHHHHHHHHhCCCCCCCCCH
Confidence 999865432 123468999999999877 67999999999 77888888888887652221
Q ss_pred cccc-------------ch--------hhhccccc-hhhhhhhhchHHHHHHHHHHhhccCCCCCCCCCCHHHHHHH
Q 040925 766 VDPS-------------LL--------MEVMTNNS-MIQEDKRVKTEECLNAIIRTGVLCSMESPFERMDMRDVVAK 820 (833)
Q Consensus 766 ~~~~-------------~~--------~~~~~~~~-~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~ 820 (833)
.+.- .. ...+.... .............++.+.+++.+||..||++|||++|+++.
T Consensus 232 ~~~l~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~mL~~dP~~R~t~~e~l~h 308 (367)
T 1cm8_A 232 LDQLKEIMKVTGTPPAEFVQRLQSDEAKNYMKGLPELEKKDFASILTNASPLAVNLLEKMLVLDAEQRVTAGEALAH 308 (367)
T ss_dssp HHHHHHHHHHHCCCCHHHHHTCSCHHHHHHHHHSCCCCCCCGGGTCTTCCHHHHHHHHHHSCSSTTTSCCHHHHHHS
T ss_pred HHHHHHHHHhcCCCCHHHHHHhhhHHHHHHHHhCCCCCCCCHHHHCCCCCHHHHHHHHHHccCChhHCCCHHHHhcC
Confidence 1100 00 00000000 00000001112345678899999999999999999999874
No 223
>4fl3_A Tyrosine-protein kinase SYK; transferase; HET: ANP; 1.90A {Homo sapiens} PDB: 4fl2_A* 1a81_A* 1csy_A* 1csz_A*
Probab=100.00 E-value=2e-37 Score=358.82 Aligned_cols=254 Identities=23% Similarity=0.299 Sum_probs=199.1
Q ss_pred ceeccCcceEEEEEEE--CCCceEEEEEEeeccCC--cchhHHHHHHHHHhhcCCCccceEeeEeecCCCCCCceEeEEE
Q 040925 537 NMIGQGSFGYVYKGTL--GEDEMIVAVKVINLKYK--GASRSFVAECEALRNIRHRNLIKIITICSSTDFKGTDFKAFVF 612 (833)
Q Consensus 537 ~~lg~G~~g~Vy~~~~--~~~~~~vavK~~~~~~~--~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~~lv~ 612 (833)
+.||+|+||.||+|.+ ..+++.||||+++.... ...+.+.+|++++++++|||||++++++... ..++||
T Consensus 375 ~~LG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~~------~~~lv~ 448 (635)
T 4fl3_A 375 KELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRMIGICEAE------SWMLVM 448 (635)
T ss_dssp EEEEECSSEEEEEEEEECSSCEEEEEEEEECGGGGCGGGHHHHHHHHHHHHHCCCTTBCCEEEEEESS------SEEEEE
T ss_pred CEeccCCCEEEEEEEEcCCCcceEEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEecC------CEEEEE
Confidence 4799999999999955 45678999999975432 2357899999999999999999999997532 478999
Q ss_pred EecCCCChhhhhccCCCccccccCCHHHHHHHHHHHHHHHHHHhhcCCCCceeeCCCCCCeeecCCCcEEEccccccccc
Q 040925 613 EYMENGSLKDWLHQSDDQVEVCKLSLIQRVNIAIDVASAMEYLHHHCQPPMVHGDLKPSNVLLDHDMVAHVCDFGLAKFL 692 (833)
Q Consensus 613 e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~gL~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kL~DfG~a~~~ 692 (833)
||+++|+|.+++.... .+++.+++.|+.||+.||+|||+. +|+||||||+||+++.++.+||+|||+|+.+
T Consensus 449 E~~~~g~L~~~l~~~~------~l~~~~~~~i~~qi~~~L~yLH~~---~iiHrDLkp~NILl~~~~~~kL~DFGla~~~ 519 (635)
T 4fl3_A 449 EMAELGPLNKYLQQNR------HVKDKNIIELVHQVSMGMKYLEES---NFVHRDLAARNVLLVTQHYAKISDFGLSKAL 519 (635)
T ss_dssp ECCTTEEHHHHHHHCT------TCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEEEETTEEEECCTTHHHHT
T ss_pred EccCCCCHHHHHhhCC------CCCHHHHHHHHHHHHHHHHHHHHC---CEeCCCCChHhEEEeCCCCEEEEEcCCcccc
Confidence 9999999999997654 689999999999999999999999 9999999999999999999999999999876
Q ss_pred CcccccccccCCCccccccccccccCccccCCCCCCcccccccCCcCCCccccCCccHHHHHH-HhCCCcccccccccch
Q 040925 693 SDHQLDTAVKTPSSSIGLKGTVGYVAPEYGMGSEASMTGDIFTGRRPIDAVFNEGHSLHEFAK-TALPEKVMEIVDPSLL 771 (833)
Q Consensus 693 ~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~s~~~~~~~~~~~g~~l~~~~~-~~~p~~~~~~~~~~~~ 771 (833)
....... .......||+.|+|||++.+..++.++|||| +|++++++++ +..|+...... ..
T Consensus 520 ~~~~~~~-----~~~~~~~~t~~y~APE~~~~~~~~~~sDvwS----------lGv~l~ellt~G~~Pf~~~~~~--~~- 581 (635)
T 4fl3_A 520 RADENYY-----KAQTHGKWPVKWYAPECINYYKFSSKSDVWS----------FGVLMWEAFSYGQKPYRGMKGS--EV- 581 (635)
T ss_dssp TC------------------CGGGSCHHHHHHCCCCHHHHHHH----------HHHHHHHHHTTTCCSSTTCCHH--HH-
T ss_pred ccCcccc-----ccccCCCCceeeeChhhhcCCCCCcHHHHHH----------HHHHHHHHHhCCCCCCCCCCHH--HH-
Confidence 5432111 1112234788999999999989999999999 7888889887 88887532211 11
Q ss_pred hhhccccchhhhhhhhchHHHHHHHHHHhhccCCCCCCCCCCHHHHHHHHHHhhhhh
Q 040925 772 MEVMTNNSMIQEDKRVKTEECLNAIIRTGVLCSMESPFERMDMRDVVAKLCHTRETF 828 (833)
Q Consensus 772 ~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~i~~~~ 828 (833)
...+.... ....+..+++.+.+++.+||+.||++|||+++|++.|+.+..++
T Consensus 582 ~~~i~~~~-----~~~~p~~~~~~l~~li~~cl~~dP~~RPs~~~l~~~L~~~~~~l 633 (635)
T 4fl3_A 582 TAMLEKGE-----RMGCPAGCPREMYDLMNLCWTYDVENRPGFAAVELRLRNYYYDV 633 (635)
T ss_dssp HHHHHTTC-----CCCCCTTCCHHHHHHHHHHTCSSTTTSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHcCC-----CCCCCCCCCHHHHHHHHHHcCCCHhHCcCHHHHHHHHHHHHHHh
Confidence 11111100 01122345678999999999999999999999999999987654
No 224
>3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A
Probab=100.00 E-value=5.3e-38 Score=343.30 Aligned_cols=258 Identities=14% Similarity=0.112 Sum_probs=192.3
Q ss_pred hcCCccCceeccCcceEEEEEEECCCceEEEEEEeecc---CCcchhHHHHHHH---HHhhcCCCccceEe-------eE
Q 040925 530 TGEFSSSNMIGQGSFGYVYKGTLGEDEMIVAVKVINLK---YKGASRSFVAECE---ALRNIRHRNLIKII-------TI 596 (833)
Q Consensus 530 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~---~~~~~~~~~~E~~---~l~~l~h~niv~~~-------~~ 596 (833)
.++|++.+.||+|+||.||+|++..+++.||||+++.. .....+.+.+|+. ++++++||||++++ ++
T Consensus 72 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~~l~hpniv~~~~~~~~~~~~ 151 (377)
T 3byv_A 72 PRTLVRGTVLGQEDPYAYLEATDQETGESFEVHVPYFTERPPSNAIKQMKEEVLRLRLLRGIKNQKQAKVHLRFIFPFDL 151 (377)
T ss_dssp CEEEEEEEEEEEETTEEEEEEEC-CCCCEEEEEEEEECC-CCTTHHHHHHHHHHGGGGSTTCCSHHHHHHHHCBCCCSEE
T ss_pred CceEEEcceeecCCCEEEEEEEECCCCcEEEEEEEeeccccchHHHHHHHHHHHHHHhccccCCHHHHHHHhhhhhhhhh
Confidence 46799999999999999999999889999999999743 2334577899994 55555899999998 44
Q ss_pred eecCCC-------CCCc-----eEeEEEEecCCCChhhhhccCCCcc-ccccCCHHHHHHHHHHHHHHHHHHhhcCCCCc
Q 040925 597 CSSTDF-------KGTD-----FKAFVFEYMENGSLKDWLHQSDDQV-EVCKLSLIQRVNIAIDVASAMEYLHHHCQPPM 663 (833)
Q Consensus 597 ~~~~~~-------~~~~-----~~~lv~e~~~~gsL~~~l~~~~~~~-~~~~l~~~~~~~i~~qi~~gL~~LH~~~~~~i 663 (833)
+...+. .+.+ ..++||||+ +|+|.+++....... ....+++..++.|+.||+.||+|||+. +|
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~i~~~~lv~E~~-~g~L~~~l~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~---~i 227 (377)
T 3byv_A 152 VKDPQKKKMIRVRLDERDMWVLSRFFLYPRM-QSNLQTFGEVLLSHSSTHKSLVHHARLQLTLQVIRLLASLHHY---GL 227 (377)
T ss_dssp EECTTSCSEEEC------CEEESEEEEEECC-SEEHHHHHHHHHHTTTTTHHHHHHHHHHHHHHHHHHHHHHHHT---TE
T ss_pred hhccCCccccccccCCCceEEEEEEEEEecc-CCCHHHHHHhccccccccccccHHHHHHHHHHHHHHHHHHHhC---Ce
Confidence 433310 0111 278999999 579999998643110 011344588889999999999999999 99
Q ss_pred eeeCCCCCCeeecCCCcEEEcccccccccCcccccccccCCCccccccccccccCccccCCC-----------CCCcccc
Q 040925 664 VHGDLKPSNVLLDHDMVAHVCDFGLAKFLSDHQLDTAVKTPSSSIGLKGTVGYVAPEYGMGS-----------EASMTGD 732 (833)
Q Consensus 664 vH~Dlkp~NIll~~~~~~kL~DfG~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-----------~~~~~~D 732 (833)
+||||||+||+++.++.+||+|||+|+..... .....| +.|+|||++.+. .++.++|
T Consensus 228 vHrDikp~NIll~~~~~~kL~DFG~a~~~~~~-----------~~~~~g-~~y~aPE~~~~~~~~~~~~~~~~~~~~~~D 295 (377)
T 3byv_A 228 VHTYLRPVDIVLDQRGGVFLTGFEHLVRDGAR-----------VVSSVS-RGFEPPELEARRATISYHRDRRTLMTFSFD 295 (377)
T ss_dssp ECSCCCGGGEEECTTCCEEECCGGGCEETTCE-----------EECCCC-TTCCCHHHHHHHTSTHHHHCCEEECCHHHH
T ss_pred ecCCCCHHHEEEcCCCCEEEEechhheecCCc-----------ccCCCC-cCccChhhhcccccccccccccccCChhhh
Confidence 99999999999999999999999999854321 123457 999999999887 8999999
Q ss_pred cccCCcCCCccccCCccHHHHHHHhCCCcccccccccchhhhccccchhhhhhhhchHHHHHHHHHHhhccCCCCCCCCC
Q 040925 733 IFTGRRPIDAVFNEGHSLHEFAKTALPEKVMEIVDPSLLMEVMTNNSMIQEDKRVKTEECLNAIIRTGVLCSMESPFERM 812 (833)
Q Consensus 733 i~s~~~~~~~~~~~g~~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RP 812 (833)
||| +|+++++++++..|+......+. ....... ...+++.+.+++.+||..||++||
T Consensus 296 vwS----------lG~il~elltg~~Pf~~~~~~~~--~~~~~~~-----------~~~~~~~~~~li~~~L~~dp~~Rp 352 (377)
T 3byv_A 296 AWA----------LGLVIYWIWCADLPITKDAALGG--SEWIFRS-----------CKNIPQPVRALLEGFLRYPKEDRL 352 (377)
T ss_dssp HHH----------HHHHHHHHHHSSCCC------CC--SGGGGSS-----------CCCCCHHHHHHHHHHTCSSGGGCC
T ss_pred HHH----------HHHHHHHHHHCCCCCcccccccc--hhhhhhh-----------ccCCCHHHHHHHHHHcCCCchhCC
Confidence 999 88899999999988753221111 0000000 012356788999999999999999
Q ss_pred CHHHHHHH--HHHhhh
Q 040925 813 DMRDVVAK--LCHTRE 826 (833)
Q Consensus 813 t~~eil~~--L~~i~~ 826 (833)
|+.|+++. +.++.+
T Consensus 353 t~~e~l~hp~f~~~~~ 368 (377)
T 3byv_A 353 LPLQAMETPEYEQLRT 368 (377)
T ss_dssp CHHHHHTSHHHHHHHH
T ss_pred CHHHHhhChHHHHHHH
Confidence 99999863 444443
No 225
>2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell cycle progression, phosphorylation, disease mutation, nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB: 4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A*
Probab=100.00 E-value=1.6e-37 Score=329.24 Aligned_cols=253 Identities=20% Similarity=0.293 Sum_probs=198.9
Q ss_pred hcCCccCceeccCcceEEEEEEECCCceEEEEEEeeccCCcchhHHHHHHHHHhhcCCCccceEeeEeecCCCCCCceEe
Q 040925 530 TGEFSSSNMIGQGSFGYVYKGTLGEDEMIVAVKVINLKYKGASRSFVAECEALRNIRHRNLIKIITICSSTDFKGTDFKA 609 (833)
Q Consensus 530 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~~ 609 (833)
.++|++.+.||+|+||.||+|++..+++.||+|++........+.+.+|++++++++||||+++++++...+ ..+
T Consensus 18 ~~~y~i~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~-----~~~ 92 (302)
T 2j7t_A 18 NEVWEIVGELGDGAFGKVYKAKNKETGALAAAKVIETKSEEELEDYIVEIEILATCDHPYIVKLLGAYYHDG-----KLW 92 (302)
T ss_dssp GGTEEEEEEEECSTTCCEEEEEETTTCCEEEEEEEC----CCHHHHHHHHHHHHHCCCTTBCCEEEEEECC------CEE
T ss_pred ccceeecceeccCCCeEEEEEEEcCCCcEEEEEEecCCCHHHHHHHHHHHHHHhcCCCCCEeeeeeeeeeCC-----eEE
Confidence 468999999999999999999999899999999997666666788999999999999999999999986654 789
Q ss_pred EEEEecCCCChhhhhccCCCccccccCCHHHHHHHHHHHHHHHHHHhhcCCCCceeeCCCCCCeeecCCCcEEEcccccc
Q 040925 610 FVFEYMENGSLKDWLHQSDDQVEVCKLSLIQRVNIAIDVASAMEYLHHHCQPPMVHGDLKPSNVLLDHDMVAHVCDFGLA 689 (833)
Q Consensus 610 lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~gL~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kL~DfG~a 689 (833)
+||||+++++|.+++..... .+++..++.++.|++.||.|||+. ||+||||||+||+++.++.+||+|||++
T Consensus 93 lv~e~~~~~~l~~~~~~~~~-----~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~kl~Dfg~~ 164 (302)
T 2j7t_A 93 IMIEFCPGGAVDAIMLELDR-----GLTEPQIQVVCRQMLEALNFLHSK---RIIHRDLKAGNVLMTLEGDIRLADFGVS 164 (302)
T ss_dssp EEEECCTTEEHHHHHHHHTS-----CCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCSGGGEEECTTSCEEECCCHHH
T ss_pred EEEEeCCCCcHHHHHHhhcc-----CCCHHHHHHHHHHHHHHHHHHhcC---CcccCCCCHHHEEECCCCCEEEEECCCC
Confidence 99999999999999875332 689999999999999999999999 9999999999999999999999999988
Q ss_pred cccCcccccccccCCCccccccccccccCcccc-----CCCCCCcccccccCCcCCCccccCCccHHHHHHHhCCCcccc
Q 040925 690 KFLSDHQLDTAVKTPSSSIGLKGTVGYVAPEYG-----MGSEASMTGDIFTGRRPIDAVFNEGHSLHEFAKTALPEKVME 764 (833)
Q Consensus 690 ~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~-----~~~~~~~~~Di~s~~~~~~~~~~~g~~l~~~~~~~~p~~~~~ 764 (833)
........ ......||+.|+|||++ .+..++.++|||| +|+++++++++..|+....
T Consensus 165 ~~~~~~~~--------~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~s----------lG~il~~l~~g~~p~~~~~ 226 (302)
T 2j7t_A 165 AKNLKTLQ--------KRDSFIGTPYWMAPEVVMCETMKDTPYDYKADIWS----------LGITLIEMAQIEPPHHELN 226 (302)
T ss_dssp HHHHHHHH--------C-----CCGGGCCHHHHHHHHTTSTTTTTHHHHHH----------HHHHHHHHHHSSCTTTTSC
T ss_pred cccccccc--------ccccccCChhhcCCeeeccccCCCCCCchhhhHHH----------HHHHHHHHhcCCCCCccCC
Confidence 64322111 11124699999999987 4677899999999 8888999999988875322
Q ss_pred cccccchhhhccccchhhhhhhhchHHHHHHHHHHhhccCCCCCCCCCCHHHHHH
Q 040925 765 IVDPSLLMEVMTNNSMIQEDKRVKTEECLNAIIRTGVLCSMESPFERMDMRDVVA 819 (833)
Q Consensus 765 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~ 819 (833)
..+ .......... .....+..++..+.+++.+||..||++|||++|+++
T Consensus 227 ~~~--~~~~~~~~~~----~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~ 275 (302)
T 2j7t_A 227 PMR--VLLKIAKSDP----PTLLTPSKWSVEFRDFLKIALDKNPETRPSAAQLLE 275 (302)
T ss_dssp HHH--HHHHHHHSCC----CCCSSGGGSCHHHHHHHHHHSCSCTTTSCCHHHHTT
T ss_pred HHH--HHHHHhccCC----cccCCccccCHHHHHHHHHHcccChhhCCCHHHHhc
Confidence 111 1111111100 001112334567889999999999999999999976
No 226
>4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET: DKI; 1.53A {Homo sapiens} PDB: 4bbm_A*
Probab=100.00 E-value=2.1e-37 Score=332.47 Aligned_cols=259 Identities=20% Similarity=0.303 Sum_probs=197.1
Q ss_pred hcCCccCceeccCcceEEEEEEECCCceEEEEEEeeccCCc--chhHHHHHHHHHhhcCCCccceEeeEeecCCCCCCce
Q 040925 530 TGEFSSSNMIGQGSFGYVYKGTLGEDEMIVAVKVINLKYKG--ASRSFVAECEALRNIRHRNLIKIITICSSTDFKGTDF 607 (833)
Q Consensus 530 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~--~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~ 607 (833)
.++|++.+.||+|+||.||+|++..+++.||||++...... ..+.+.+|++++++++||||+++++++.... .
T Consensus 24 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~-----~ 98 (331)
T 4aaa_A 24 MEKYENLGLVGEGSYGMVMKCRNKDTGRIVAIKKFLESDDDKMVKKIAMREIKLLKQLRHENLVNLLEVCKKKK-----R 98 (331)
T ss_dssp GGGEEEEEEGGGGTTSSEEEEEETTTCCEEEEEEEESCSSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETT-----E
T ss_pred hhhheeeeEEeecCCEEEEEEEECCCCceEEEEEEecCCCchHHHHHHHHHHHHHhhCCCCCEeeEEEEeecCC-----E
Confidence 45799999999999999999999999999999998654332 2356789999999999999999999986654 8
Q ss_pred EeEEEEecCCCChhhhhccCCCccccccCCHHHHHHHHHHHHHHHHHHhhcCCCCceeeCCCCCCeeecCCCcEEEcccc
Q 040925 608 KAFVFEYMENGSLKDWLHQSDDQVEVCKLSLIQRVNIAIDVASAMEYLHHHCQPPMVHGDLKPSNVLLDHDMVAHVCDFG 687 (833)
Q Consensus 608 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~gL~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kL~DfG 687 (833)
.++||||+++++|.++..... .+++..++.++.|++.||+|||+. ||+||||||+||+++.++.+||+|||
T Consensus 99 ~~lv~e~~~~~~l~~~~~~~~------~~~~~~~~~~~~qi~~~l~~LH~~---~ivH~dlkp~Nil~~~~~~~kl~Dfg 169 (331)
T 4aaa_A 99 WYLVFEFVDHTILDDLELFPN------GLDYQVVQKYLFQIINGIGFCHSH---NIIHRDIKPENILVSQSGVVKLCDFG 169 (331)
T ss_dssp EEEEEECCSEEHHHHHHHSTT------CCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTSCEEECCCT
T ss_pred EEEEEecCCcchHHHHHhhcc------CCCHHHHHHHHHHHHHHHHHHHHC---CEEccCcChheEEEcCCCcEEEEeCC
Confidence 999999999999988876544 689999999999999999999999 99999999999999999999999999
Q ss_pred cccccCcccccccccCCCccccccccccccCccccCCC-CCCcccccccCCcCCCccccCCccHHHHHHHhCCCcccccc
Q 040925 688 LAKFLSDHQLDTAVKTPSSSIGLKGTVGYVAPEYGMGS-EASMTGDIFTGRRPIDAVFNEGHSLHEFAKTALPEKVMEIV 766 (833)
Q Consensus 688 ~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~Di~s~~~~~~~~~~~g~~l~~~~~~~~p~~~~~~~ 766 (833)
+++....... ......||+.|+|||++.+. .++.++|||| .|+++++++++..|+......
T Consensus 170 ~~~~~~~~~~--------~~~~~~~t~~y~aPE~~~~~~~~~~~~Di~s----------lG~il~~l~~g~~pf~~~~~~ 231 (331)
T 4aaa_A 170 FARTLAAPGE--------VYDDEVATRWYRAPELLVGDVKYGKAVDVWA----------IGCLVTEMFMGEPLFPGDSDI 231 (331)
T ss_dssp TC--------------------CCCCCTTCCHHHHTTCTTCCTHHHHHH----------HHHHHHHHHHSSCSCCCSSHH
T ss_pred CceeecCCcc--------ccCCCcCCccccCcccccCCCCcchHHHHHH----------HHHHHHHHHhCCCCCCCCCcH
Confidence 9986544221 11234699999999998775 6899999999 788888998888776522211
Q ss_pred cccchh-hhcc---------------------ccchhhhhhhhchHHHHHHHHHHhhccCCCCCCCCCCHHHHHHH
Q 040925 767 DPSLLM-EVMT---------------------NNSMIQEDKRVKTEECLNAIIRTGVLCSMESPFERMDMRDVVAK 820 (833)
Q Consensus 767 ~~~~~~-~~~~---------------------~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~ 820 (833)
+..... .... .............+.+++.+.+++.+||+.||++|||++|+++.
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rpt~~ell~h 307 (331)
T 4aaa_A 232 DQLYHIMMCLGNLIPRHQELFNKNPVFAGVRLPEIKEREPLERRYPKLSEVVIDLAKKCLHIDPDKRPFCAELLHH 307 (331)
T ss_dssp HHHHHHHHHHCSCCHHHHHHHHHCGGGTTCCCCCCSSCCCHHHHSTTSCHHHHHHHHHHTCSSGGGSCCGGGGGGS
T ss_pred HHHHHHHHHhCCCChhhhhHhhhccccccccCccccccchhhhcccchhHHHHHHHHHHhccCcccCCCHHHHhcC
Confidence 100000 0000 00000000011112346778999999999999999999999875
No 227
>3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens}
Probab=100.00 E-value=3e-37 Score=332.63 Aligned_cols=271 Identities=19% Similarity=0.219 Sum_probs=193.8
Q ss_pred hcCCccCceeccCcceEEEEEEECCCceEEEEEEeeccCCcchhHHHHHHHHHhhcC-CCccceEeeEeecCC---CCCC
Q 040925 530 TGEFSSSNMIGQGSFGYVYKGTLGEDEMIVAVKVINLKYKGASRSFVAECEALRNIR-HRNLIKIITICSSTD---FKGT 605 (833)
Q Consensus 530 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~-h~niv~~~~~~~~~~---~~~~ 605 (833)
..+|++.+.||+|+||.||+|++..+++.||||++........+.+.+|+.+++++. ||||+++++++.... ....
T Consensus 27 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~~h~~iv~~~~~~~~~~~~~~~~~ 106 (337)
T 3ll6_A 27 ELRLRVRRVLAEGGFAFVYEAQDVGSGREYALKRLLSNEEEKNRAIIQEVCFMKKLSGHPNIVQFCSAASIGKEESDTGQ 106 (337)
T ss_dssp TEEEEEEEEEECCSSEEEEEEEETTTCCEEEEEEEEESSHHHHHHHHHHHHHHHHHTTSTTBCCEEEEEEECTTTSTTSS
T ss_pred CceEEEEEEEccCCceEEEEEEECCCCcEEEEEEecCCchHHHHHHHHHHHHHHHhccCCChhhccccccccccccccCC
Confidence 458999999999999999999999999999999997655555678899999999996 999999999985322 1334
Q ss_pred ceEeEEEEecCCCChhhhhccCCCccccccCCHHHHHHHHHHHHHHHHHHhhcCCCC--ceeeCCCCCCeeecCCCcEEE
Q 040925 606 DFKAFVFEYMENGSLKDWLHQSDDQVEVCKLSLIQRVNIAIDVASAMEYLHHHCQPP--MVHGDLKPSNVLLDHDMVAHV 683 (833)
Q Consensus 606 ~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~gL~~LH~~~~~~--ivH~Dlkp~NIll~~~~~~kL 683 (833)
...++||||++ |+|.+++...... ..+++.+++.++.|++.||+|||+. + |+||||||+||+++.++.+||
T Consensus 107 ~~~~lv~e~~~-g~L~~~l~~~~~~---~~~~~~~~~~i~~qi~~~l~~LH~~---~~~ivH~Dikp~NIl~~~~~~~kl 179 (337)
T 3ll6_A 107 AEFLLLTELCK-GQLVEFLKKMESR---GPLSCDTVLKIFYQTCRAVQHMHRQ---KPPIIHRDLKVENLLLSNQGTIKL 179 (337)
T ss_dssp EEEEEEEECCS-EEHHHHHHHHHTT---CSCCHHHHHHHHHHHHHHHHHHHTS---SSCCBCCCCCGGGCEECTTSCEEB
T ss_pred ceEEEEEEecC-CCHHHHHHHhhcc---CCCCHHHHHHHHHHHHHHHHHHHhC---CCCEEEccCCcccEEECCCCCEEE
Confidence 56899999996 6999988752211 1689999999999999999999999 8 999999999999999999999
Q ss_pred cccccccccCccccccccc----CCCccccccccccccCcccc---CCCCCCcccccccCCcCCCccccCCccHHHHHHH
Q 040925 684 CDFGLAKFLSDHQLDTAVK----TPSSSIGLKGTVGYVAPEYG---MGSEASMTGDIFTGRRPIDAVFNEGHSLHEFAKT 756 (833)
Q Consensus 684 ~DfG~a~~~~~~~~~~~~~----~~~~~~~~~gt~~y~aPE~~---~~~~~~~~~Di~s~~~~~~~~~~~g~~l~~~~~~ 756 (833)
+|||+++............ .........||+.|+|||++ .+..++.++|||| +|+++++++++
T Consensus 180 ~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~~~Dv~s----------lG~il~el~~g 249 (337)
T 3ll6_A 180 CDFGSATTISHYPDYSWSAQRRALVEEEITRNTTPMYRTPEIIDLYSNFPIGEKQDIWA----------LGCILYLLCFR 249 (337)
T ss_dssp CCCTTCBCCSSCC-------------------------------CCTTSCSSHHHHHHH----------HHHHHHHHHHS
T ss_pred ecCccceeccccCcccccccccccchhhccccCCCCcCChhhhhccccCCCChHHhHHH----------HHHHHHHHHhC
Confidence 9999998765432211000 00111234699999999998 5677899999999 88889999999
Q ss_pred hCCCcccccccccchhhhccccchhhhhhhhchHHHHHHHHHHhhccCCCCCCCCCCHHHHHHHHHHhhhhh
Q 040925 757 ALPEKVMEIVDPSLLMEVMTNNSMIQEDKRVKTEECLNAIIRTGVLCSMESPFERMDMRDVVAKLCHTRETF 828 (833)
Q Consensus 757 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~i~~~~ 828 (833)
..|+...... ... ....... .....+..+.+++.+||+.||++|||++|+++.|+.+.+..
T Consensus 250 ~~p~~~~~~~--~~~----~~~~~~~-----~~~~~~~~~~~li~~~l~~~p~~Rps~~e~l~~l~~~~~~~ 310 (337)
T 3ll6_A 250 QHPFEDGAKL--RIV----NGKYSIP-----PHDTQYTVFHSLIRAMLQVNPEERLSIAEVVHQLQEIAAAR 310 (337)
T ss_dssp SCCC------------------CCCC-----TTCCSSGGGHHHHHHHSCSSGGGSCCHHHHHHHHHHHHHHT
T ss_pred CCCCcchhHH--Hhh----cCcccCC-----cccccchHHHHHHHHHccCChhhCcCHHHHHHHHHHHHhcc
Confidence 9887522211 110 0000000 01112345778999999999999999999999999987653
No 228
>1ua2_A CAK, cell division protein kinase 7; cell cycle, phosphorylation, protein-protein interaction, PR kinase, cell cycle, transferase; HET: TPO ATP; 3.02A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=2.6e-37 Score=333.74 Aligned_cols=262 Identities=23% Similarity=0.304 Sum_probs=192.1
Q ss_pred HHHhcCCccCceeccCcceEEEEEEECCCceEEEEEEeeccCC-----cchhHHHHHHHHHhhcCCCccceEeeEeecCC
Q 040925 527 SKATGEFSSSNMIGQGSFGYVYKGTLGEDEMIVAVKVINLKYK-----GASRSFVAECEALRNIRHRNLIKIITICSSTD 601 (833)
Q Consensus 527 ~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~-----~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~ 601 (833)
....++|++.+.||+|+||.||+|++..+++.||||+++.... ...+.+.+|++++++++||||+++++++....
T Consensus 6 ~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~ 85 (346)
T 1ua2_A 6 KSRAKRYEKLDFLGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSHPNIIGLLDAFGHKS 85 (346)
T ss_dssp -------CEEEEEEEETTEEEEEEECSSCCSEEEEEEC------------CTHHHHHHHHHHHCCCTTBCCEEEEECCTT
T ss_pred HHHhcccEEEeEEeecCCEEEEEEEECCCCcEEEEEEEecCCcchhhhhhhHHHHHHHHHHhhCCCCCCCeEEEEEeeCC
Confidence 3445789999999999999999999998999999999974322 12357889999999999999999999975544
Q ss_pred CCCCceEeEEEEecCCCChhhhhccCCCccccccCCHHHHHHHHHHHHHHHHHHhhcCCCCceeeCCCCCCeeecCCCcE
Q 040925 602 FKGTDFKAFVFEYMENGSLKDWLHQSDDQVEVCKLSLIQRVNIAIDVASAMEYLHHHCQPPMVHGDLKPSNVLLDHDMVA 681 (833)
Q Consensus 602 ~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~gL~~LH~~~~~~ivH~Dlkp~NIll~~~~~~ 681 (833)
..++||||+++ +|.+++..... .+++.+++.++.|++.||+|||+. +|+||||||+||+++.++.+
T Consensus 86 -----~~~lv~e~~~~-~l~~~~~~~~~-----~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~Dlkp~Nil~~~~~~~ 151 (346)
T 1ua2_A 86 -----NISLVFDFMET-DLEVIIKDNSL-----VLTPSHIKAYMLMTLQGLEYLHQH---WILHRDLKPNNLLLDENGVL 151 (346)
T ss_dssp -----CCEEEEECCSE-EHHHHHTTCCS-----SCCSSHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTCCE
T ss_pred -----ceEEEEEcCCC-CHHHHHHhcCc-----CCCHHHHHHHHHHHHHHHHHHHHC---CEECCCCCHHHEEEcCCCCE
Confidence 78999999985 89998876542 588999999999999999999999 99999999999999999999
Q ss_pred EEcccccccccCcccccccccCCCccccccccccccCccccCCC-CCCcccccccCCcCCCccccCCccHHHHHHHhCCC
Q 040925 682 HVCDFGLAKFLSDHQLDTAVKTPSSSIGLKGTVGYVAPEYGMGS-EASMTGDIFTGRRPIDAVFNEGHSLHEFAKTALPE 760 (833)
Q Consensus 682 kL~DfG~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~Di~s~~~~~~~~~~~g~~l~~~~~~~~p~ 760 (833)
||+|||+++....... ......||+.|+|||++.+. .++.++|||| .|+++++++++..|+
T Consensus 152 kl~Dfg~a~~~~~~~~--------~~~~~~~t~~y~aPE~~~~~~~~~~~~Diws----------lG~il~ell~g~~~~ 213 (346)
T 1ua2_A 152 KLADFGLAKSFGSPNR--------AYTHQVVTRWYRAPELLFGARMYGVGVDMWA----------VGCILAELLLRVPFL 213 (346)
T ss_dssp EECCCGGGSTTTSCCC--------CCCCSCCCCTTCCHHHHTTCSCCCHHHHHHH----------HHHHHHHHHHSSCSS
T ss_pred EEEecccceeccCCcc--------cCCcccccccccCchHhhCCCCCCchhhhHh----------HHHHHHHHHHCCCCC
Confidence 9999999987643221 12234699999999998764 4899999999 777788888876665
Q ss_pred cccccccc--cch-----------h------hhccccchhhhhhhhchHHHHHHHHHHhhccCCCCCCCCCCHHHHHHH
Q 040925 761 KVMEIVDP--SLL-----------M------EVMTNNSMIQEDKRVKTEECLNAIIRTGVLCSMESPFERMDMRDVVAK 820 (833)
Q Consensus 761 ~~~~~~~~--~~~-----------~------~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~ 820 (833)
......+. ... . +..................++..+.+++.+||..||++|||++|+++.
T Consensus 214 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~h 292 (346)
T 1ua2_A 214 PGDSDLDQLTRIFETLGTPTEEQWPDMCSLPDYVTFKSFPGIPLHHIFSAAGDDLLDLIQGLFLFNPCARITATQALKM 292 (346)
T ss_dssp CCSSHHHHHHHHHHHHCCCCTTTSSSTTSSTTCCCCCCCCCCCHHHHCTTCCHHHHHHHHHHHCSSTTTSCCHHHHHTS
T ss_pred CCCCHHHHHHHHHHHcCCCChhhhhhhccCcccccccccCCCChHHhhccCCHHHHHHHHHHhccChhhCCCHHHHhcC
Confidence 42111000 000 0 000000000000001112345678999999999999999999999874
No 229
>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei}
Probab=100.00 E-value=6.6e-37 Score=347.60 Aligned_cols=253 Identities=21% Similarity=0.265 Sum_probs=200.7
Q ss_pred HhcCCccCceeccCcceEEEEEEECCCceEEEEEEeeccCC-------------cchhHHHHHHHHHhhcCCCccceEee
Q 040925 529 ATGEFSSSNMIGQGSFGYVYKGTLGEDEMIVAVKVINLKYK-------------GASRSFVAECEALRNIRHRNLIKIIT 595 (833)
Q Consensus 529 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~-------------~~~~~~~~E~~~l~~l~h~niv~~~~ 595 (833)
..++|++.+.||+|+||.||+|++..+++.||+|+++.... ...+.+.+|++++++++||||+++++
T Consensus 34 i~~~Y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~ 113 (504)
T 3q5i_A 34 IGESYFKVRKLGSGAYGEVLLCKEKNGHSEKAIKVIKKSQFDKGRYSDDNKNIEKFHEEIYNEISLLKSLDHPNIIKLFD 113 (504)
T ss_dssp GGGTEEEEEEEEC--CEEEEEEEETTTCCEEEEEEEEC----------------CTHHHHHHHHHHHHTCCCTTBCCEEE
T ss_pred cccceEEEeEecccCCeEEEEEEECCCCcEEEEEEEEhhhcccccccccchhhHHHHHHHHHHHHHHHhCCCCCCCeEEE
Confidence 35689999999999999999999999999999999974321 23467899999999999999999999
Q ss_pred EeecCCCCCCceEeEEEEecCCCChhhhhccCCCccccccCCHHHHHHHHHHHHHHHHHHhhcCCCCceeeCCCCCCeee
Q 040925 596 ICSSTDFKGTDFKAFVFEYMENGSLKDWLHQSDDQVEVCKLSLIQRVNIAIDVASAMEYLHHHCQPPMVHGDLKPSNVLL 675 (833)
Q Consensus 596 ~~~~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~gL~~LH~~~~~~ivH~Dlkp~NIll 675 (833)
++.... ..++|||||++|+|.+++.... .+++..++.++.|++.||+|||+. +|+||||||+||++
T Consensus 114 ~~~~~~-----~~~lv~e~~~gg~L~~~l~~~~------~~~~~~~~~i~~qi~~~l~~lH~~---~ivH~Dlkp~Nil~ 179 (504)
T 3q5i_A 114 VFEDKK-----YFYLVTEFYEGGELFEQIINRH------KFDECDAANIMKQILSGICYLHKH---NIVHRDIKPENILL 179 (504)
T ss_dssp EEECSS-----EEEEEEECCTTCBHHHHHHHHS------CCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEE
T ss_pred EEEcCC-----EEEEEEecCCCCcHHHHHHHcC------CCCHHHHHHHHHHHHHHHHHHHHC---CeEeCCCcHHHEEE
Confidence 976554 8999999999999999997654 689999999999999999999999 99999999999999
Q ss_pred cCCC---cEEEcccccccccCcccccccccCCCccccccccccccCccccCCCCCCcccccccCCcCCCccccCCccHHH
Q 040925 676 DHDM---VAHVCDFGLAKFLSDHQLDTAVKTPSSSIGLKGTVGYVAPEYGMGSEASMTGDIFTGRRPIDAVFNEGHSLHE 752 (833)
Q Consensus 676 ~~~~---~~kL~DfG~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~s~~~~~~~~~~~g~~l~~ 752 (833)
+.++ .+||+|||+|+...... ......||+.|+|||++.+ .++.++|||| .|+++|+
T Consensus 180 ~~~~~~~~~kl~Dfg~a~~~~~~~---------~~~~~~gt~~y~aPE~~~~-~~~~~~Diws----------lG~il~~ 239 (504)
T 3q5i_A 180 ENKNSLLNIKIVDFGLSSFFSKDY---------KLRDRLGTAYYIAPEVLKK-KYNEKCDVWS----------CGVIMYI 239 (504)
T ss_dssp SSTTCCSSEEECCCTTCEECCTTS---------CBCCCCSCTTTCCHHHHTT-CBCTHHHHHH----------HHHHHHH
T ss_pred ecCCCCccEEEEECCCCEEcCCCC---------ccccccCCcCCCCHHHhcc-CCCchHHHHH----------HHHHHHH
Confidence 8776 69999999998765432 1223469999999999774 6999999999 8889999
Q ss_pred HHHHhCCCcccccccccchhhhccccchhhhhhhhchHHHHHHHHHHhhccCCCCCCCCCCHHHHHHH
Q 040925 753 FAKTALPEKVMEIVDPSLLMEVMTNNSMIQEDKRVKTEECLNAIIRTGVLCSMESPFERMDMRDVVAK 820 (833)
Q Consensus 753 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~ 820 (833)
++++..|+..... ............... ......+++.+.+++.+||..||++|||++|+++.
T Consensus 240 ll~g~~pf~~~~~--~~~~~~i~~~~~~~~---~~~~~~~s~~~~~li~~~L~~dp~~R~t~~e~l~h 302 (504)
T 3q5i_A 240 LLCGYPPFGGQND--QDIIKKVEKGKYYFD---FNDWKNISDEAKELIKLMLTYDYNKRCTAEEALNS 302 (504)
T ss_dssp HHHSSCSSCCSSH--HHHHHHHHHCCCCCC---HHHHTTSCHHHHHHHHHHTCSSTTTSCCHHHHHTS
T ss_pred HHhCCCCCCCCCH--HHHHHHHHcCCCCCC---ccccCCCCHHHHHHHHHHcCCChhHCCCHHHHhcC
Confidence 9999988763221 111111111111000 01112345678999999999999999999999864
No 230
>2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens}
Probab=100.00 E-value=6e-37 Score=323.61 Aligned_cols=254 Identities=22% Similarity=0.293 Sum_probs=198.2
Q ss_pred CCccCceeccCcceEEEEEEECCCceEEEEEEeeccCCcchhHHHHHHHHHhhcCCCccceEeeEeecCCCCCCceEeEE
Q 040925 532 EFSSSNMIGQGSFGYVYKGTLGEDEMIVAVKVINLKYKGASRSFVAECEALRNIRHRNLIKIITICSSTDFKGTDFKAFV 611 (833)
Q Consensus 532 ~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~~lv 611 (833)
+|.....||+|+||.||+|++..+++.||||.++.......+.+.+|+.+++.++||||+++++++...+ ..++|
T Consensus 23 ~~~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~-----~~~lv 97 (295)
T 2clq_A 23 ENGDRVVLGKGTYGIVYAGRDLSNQVRIAIKEIPERDSRYSQPLHEEIALHKHLKHKNIVQYLGSFSENG-----FIKIF 97 (295)
T ss_dssp TTSSBCEEEECSSSEEEEEEETTTCCEEEEEEEECCCC---HHHHHHHHHHHTCCCTTBCCEEEEEEETT-----EEEEE
T ss_pred CCCCcEEEeecCcEEEEEEEECCCCeEEEEEEccCCchHHHHHHHHHHHHHHhCCCCCEeeEeeEEEeCC-----cEEEE
Confidence 4555669999999999999999899999999998665556678999999999999999999999986654 88999
Q ss_pred EEecCCCChhhhhccCCCccccccCCHHHHHHHHHHHHHHHHHHhhcCCCCceeeCCCCCCeeecC-CCcEEEccccccc
Q 040925 612 FEYMENGSLKDWLHQSDDQVEVCKLSLIQRVNIAIDVASAMEYLHHHCQPPMVHGDLKPSNVLLDH-DMVAHVCDFGLAK 690 (833)
Q Consensus 612 ~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~gL~~LH~~~~~~ivH~Dlkp~NIll~~-~~~~kL~DfG~a~ 690 (833)
|||+++++|.+++...... ..+++..++.++.|++.||+|||+. +|+||||||+||+++. ++.+||+|||++.
T Consensus 98 ~e~~~~~~L~~~l~~~~~~---~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~~kl~Dfg~~~ 171 (295)
T 2clq_A 98 MEQVPGGSLSALLRSKWGP---LKDNEQTIGFYTKQILEGLKYLHDN---QIVHRDIKGDNVLINTYSGVLKISDFGTSK 171 (295)
T ss_dssp EECCSEEEHHHHHHHTTCC---CTTCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEEETTTCCEEECCTTTCE
T ss_pred EEeCCCCCHHHHHHhhccC---CCccHHHHHHHHHHHHHHHHHHHhC---CEEccCCChhhEEEECCCCCEEEeeccccc
Confidence 9999999999999865321 1467889999999999999999999 9999999999999987 8999999999998
Q ss_pred ccCcccccccccCCCccccccccccccCccccCCCC--CCcccccccCCcCCCccccCCccHHHHHHHhCCCcccccccc
Q 040925 691 FLSDHQLDTAVKTPSSSIGLKGTVGYVAPEYGMGSE--ASMTGDIFTGRRPIDAVFNEGHSLHEFAKTALPEKVMEIVDP 768 (833)
Q Consensus 691 ~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~--~~~~~Di~s~~~~~~~~~~~g~~l~~~~~~~~p~~~~~~~~~ 768 (833)
....... ......||+.|+|||++.+.. ++.++|||| +|+++++++++..|+........
T Consensus 172 ~~~~~~~--------~~~~~~~~~~y~aPE~~~~~~~~~~~~~Di~s----------lG~il~~l~~g~~pf~~~~~~~~ 233 (295)
T 2clq_A 172 RLAGINP--------CTETFTGTLQYMAPEIIDKGPRGYGKAADIWS----------LGCTIIEMATGKPPFYELGEPQA 233 (295)
T ss_dssp ESCC-------------CCCCCCGGGCCHHHHHHGGGGCSHHHHHHH----------HHHHHHHHHHTSCTTGGGSSHHH
T ss_pred ccCCCCC--------cccccCCCccccChhhhcCCCCCCCcHHHHHH----------HHHHHHHHHHCCCCccCCCchhH
Confidence 6543211 112346999999999987643 789999999 88899999999888753211111
Q ss_pred cchhhhccccchhhhhhhhchHHHHHHHHHHhhccCCCCCCCCCCHHHHHHH
Q 040925 769 SLLMEVMTNNSMIQEDKRVKTEECLNAIIRTGVLCSMESPFERMDMRDVVAK 820 (833)
Q Consensus 769 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~ 820 (833)
......... .....+..++..+.+++.+||+.||++|||++|+++.
T Consensus 234 ~~~~~~~~~------~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~~ll~~ 279 (295)
T 2clq_A 234 AMFKVGMFK------VHPEIPESMSAEAKAFILKCFEPDPDKRACANDLLVD 279 (295)
T ss_dssp HHHHHHHHC------CCCCCCTTSCHHHHHHHHHTTCSSTTTSCCHHHHHTS
T ss_pred HHHhhcccc------ccccccccCCHHHHHHHHHHccCChhhCCCHHHHhcC
Confidence 110000000 0001123346678899999999999999999999864
No 231
>2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A*
Probab=100.00 E-value=7.4e-38 Score=327.66 Aligned_cols=260 Identities=20% Similarity=0.261 Sum_probs=203.6
Q ss_pred hcCCccCceeccCcceEEEEEEECCCceEEEEEEeeccCC--cchhHHHHHHHHHhhcCCCccceEeeEeecCCCCCCce
Q 040925 530 TGEFSSSNMIGQGSFGYVYKGTLGEDEMIVAVKVINLKYK--GASRSFVAECEALRNIRHRNLIKIITICSSTDFKGTDF 607 (833)
Q Consensus 530 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~--~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~ 607 (833)
.++|++.+.||+|+||.||+|++..+++.||+|+++.... ...+.+.+|++++++++||||+++++++.... ...
T Consensus 5 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~---~~~ 81 (279)
T 2w5a_A 5 AEDYEVLYTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTEAEKQMLVSEVNLLRELKHPNIVRYYDRIIDRT---NTT 81 (279)
T ss_dssp GGGEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEECTTCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEEGG---GTE
T ss_pred hhheeeehhccCCCCcEEEEEEECCCCcEEEEEEEEcccCCHHHHHHHHHHHHHHHhcCCCCCCeEEEEEecCC---Cce
Confidence 4689999999999999999999999999999999975432 23467899999999999999999999875322 347
Q ss_pred EeEEEEecCCCChhhhhccCCCccccccCCHHHHHHHHHHHHHHHHHHhhcCCCC-----ceeeCCCCCCeeecCCCcEE
Q 040925 608 KAFVFEYMENGSLKDWLHQSDDQVEVCKLSLIQRVNIAIDVASAMEYLHHHCQPP-----MVHGDLKPSNVLLDHDMVAH 682 (833)
Q Consensus 608 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~gL~~LH~~~~~~-----ivH~Dlkp~NIll~~~~~~k 682 (833)
.++||||+++|+|.+++...... ...+++..++.++.|++.||+|||+. + |+||||||+||+++.++.+|
T Consensus 82 ~~lv~e~~~~~~L~~~l~~~~~~--~~~~~~~~~~~i~~~i~~~l~~lH~~---~~~~~~ivH~dl~p~NIl~~~~~~~k 156 (279)
T 2w5a_A 82 LYIVMEYCEGGDLASVITKGTKE--RQYLDEEFVLRVMTQLTLALKECHRR---SDGGHTVLHRDLKPANVFLDGKQNVK 156 (279)
T ss_dssp EEEEEECCTTEEHHHHHHHHHHT--TCCCCHHHHHHHHHHHHHHHHHHHHH---C------CCCCCSGGGEEECSSSCEE
T ss_pred EEEEEeCCCCCCHHHHHHhhccc--CCCCCHHHHHHHHHHHHHHHHHHhcc---cCCCCeeEEeccchhhEEEcCCCCEE
Confidence 89999999999999999764311 12489999999999999999999999 8 99999999999999999999
Q ss_pred EcccccccccCcccccccccCCCccccccccccccCccccCCCCCCcccccccCCcCCCccccCCccHHHHHHHhCCCcc
Q 040925 683 VCDFGLAKFLSDHQLDTAVKTPSSSIGLKGTVGYVAPEYGMGSEASMTGDIFTGRRPIDAVFNEGHSLHEFAKTALPEKV 762 (833)
Q Consensus 683 L~DfG~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~s~~~~~~~~~~~g~~l~~~~~~~~p~~~ 762 (833)
|+|||+++....... ......||+.|+|||++.+..++.++|||| +|+++++++++..|+..
T Consensus 157 l~dfg~~~~~~~~~~--------~~~~~~~~~~y~aPE~~~~~~~~~~~Di~s----------lG~il~~l~~g~~p~~~ 218 (279)
T 2w5a_A 157 LGDFGLARILNHDTS--------FAKTFVGTPYYMSPEQMNRMSYNEKSDIWS----------LGCLLYELCALMPPFTA 218 (279)
T ss_dssp ECCCCHHHHC---CH--------HHHHHHSCCTTCCHHHHHCC-CCHHHHHHH----------HHHHHHHHHHSSCSSCC
T ss_pred EecCchheeeccccc--------cccccCCCccccChHHhccCCCCchhhHHH----------HHHHHHHHHHCCCCCcc
Confidence 999999986543211 111245899999999999889999999999 88899999999888753
Q ss_pred cccccccchhhhccccchhhhhhhhchHHHHHHHHHHhhccCCCCCCCCCCHHHHHHHHHH
Q 040925 763 MEIVDPSLLMEVMTNNSMIQEDKRVKTEECLNAIIRTGVLCSMESPFERMDMRDVVAKLCH 823 (833)
Q Consensus 763 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~ 823 (833)
... ............ ...+..++..+.+++.+||+.||++|||++|+++.+..
T Consensus 219 ~~~--~~~~~~i~~~~~------~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~ll~~~~~ 271 (279)
T 2w5a_A 219 FSQ--KELAGKIREGKF------RRIPYRYSDELNEIITRMLNLKDYHRPSVEEILENPLI 271 (279)
T ss_dssp SSH--HHHHHHHHHTCC------CCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHTSTTC
T ss_pred cCH--HHHHHHHhhccc------ccCCcccCHHHHHHHHHHcCCCcccCCCHHHHHhChhh
Confidence 221 111111111100 01122346678999999999999999999999986543
No 232
>3mi9_A Cell division protein kinase 9; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Homo sapiens} PDB: 3mia_A* 4ec9_A* 4ec8_A* 3blh_A* 3blq_A* 3blr_A* 3lq5_A* 3my1_A* 3tn8_A* 3tnh_A* 3tni_A* 4bch_A* 4bci_A* 4bcj_A* 4bcf_A*
Probab=100.00 E-value=6.8e-37 Score=331.51 Aligned_cols=268 Identities=22% Similarity=0.312 Sum_probs=198.5
Q ss_pred hcCCccCceeccCcceEEEEEEECCCceEEEEEEeeccCC--cchhHHHHHHHHHhhcCCCccceEeeEeecCCC---CC
Q 040925 530 TGEFSSSNMIGQGSFGYVYKGTLGEDEMIVAVKVINLKYK--GASRSFVAECEALRNIRHRNLIKIITICSSTDF---KG 604 (833)
Q Consensus 530 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~--~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~---~~ 604 (833)
.++|++.+.||+|+||.||+|++..+++.||||++..... .....+.+|++++++++||||+++++++..... ..
T Consensus 16 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~ 95 (351)
T 3mi9_A 16 VSKYEKLAKIGQGTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEICRTKASPYNRC 95 (351)
T ss_dssp GGGEEEEEECSSCSTTSEEEEEETTTCCEEEEEECCCSSCSSSSCHHHHHHHHHHHHCCCTTBCCEEEEEEEC-------
T ss_pred ccceeEEEEEecCCCcEEEEEEECCCCCEEEEEEEecccccccchHHHHHHHHHHHhccCCCcccHhheeeccccccccC
Confidence 4689999999999999999999998999999999864432 234578899999999999999999999876431 11
Q ss_pred CceEeEEEEecCCCChhhhhccCCCccccccCCHHHHHHHHHHHHHHHHHHhhcCCCCceeeCCCCCCeeecCCCcEEEc
Q 040925 605 TDFKAFVFEYMENGSLKDWLHQSDDQVEVCKLSLIQRVNIAIDVASAMEYLHHHCQPPMVHGDLKPSNVLLDHDMVAHVC 684 (833)
Q Consensus 605 ~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~gL~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kL~ 684 (833)
.+..++||||+++ ++.+.+..... .+++.+++.++.|++.||+|||+. ||+||||||+||+++.++.+||+
T Consensus 96 ~~~~~lv~e~~~~-~l~~~l~~~~~-----~~~~~~~~~i~~qi~~~l~~LH~~---~ivH~Dlkp~NIl~~~~~~~kl~ 166 (351)
T 3mi9_A 96 KGSIYLVFDFCEH-DLAGLLSNVLV-----KFTLSEIKRVMQMLLNGLYYIHRN---KILHRDMKAANVLITRDGVLKLA 166 (351)
T ss_dssp -CEEEEEEECCSE-EHHHHHHCTTS-----CCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTSCEEEC
T ss_pred CceEEEEEeccCC-CHHHHHhhccC-----CCCHHHHHHHHHHHHHHHHHHHHC---CeeCCCCCHHHEEEcCCCCEEEc
Confidence 3478999999975 88887766532 689999999999999999999999 99999999999999999999999
Q ss_pred ccccccccCcccccccccCCCccccccccccccCccccCC-CCCCcccccccCCcCCCccccCCccHHHHHHHhCCCccc
Q 040925 685 DFGLAKFLSDHQLDTAVKTPSSSIGLKGTVGYVAPEYGMG-SEASMTGDIFTGRRPIDAVFNEGHSLHEFAKTALPEKVM 763 (833)
Q Consensus 685 DfG~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Di~s~~~~~~~~~~~g~~l~~~~~~~~p~~~~ 763 (833)
|||+|+.+...... .........||+.|+|||++.+ ..++.++|||| .|+++++++++..|+...
T Consensus 167 Dfg~a~~~~~~~~~----~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~Diws----------lG~il~ell~g~~pf~~~ 232 (351)
T 3mi9_A 167 DFGLARAFSLAKNS----QPNRYTNRVVTLWYRPPELLLGERDYGPPIDLWG----------AGCIMAEMWTRSPIMQGN 232 (351)
T ss_dssp CCTTCEECCCCSSS----SCCCCCSSCSCGGGCCHHHHTTCCSCCTHHHHHH----------HHHHHHHHHHSSCSCCCS
T ss_pred cchhcccccccccc----cccccCCcccccCccCchhhcCCCCCCcHhHHHH----------HHHHHHHHHhCCCCCCCC
Confidence 99999876532211 1122234578999999998876 45899999999 777788888887775421
Q ss_pred ccc-------------cccchhhhcc----ccch-hhhh-----hhhchHHHHHHHHHHhhccCCCCCCCCCCHHHHHHH
Q 040925 764 EIV-------------DPSLLMEVMT----NNSM-IQED-----KRVKTEECLNAIIRTGVLCSMESPFERMDMRDVVAK 820 (833)
Q Consensus 764 ~~~-------------~~~~~~~~~~----~~~~-~~~~-----~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~ 820 (833)
... .+........ .... .... .........+.+.+++.+||+.||++|||++|+++.
T Consensus 233 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~h 312 (351)
T 3mi9_A 233 TEQHQLALISQLCGSITPEVWPNVDNYELYEKLELVKGQKRKVKDRLKAYVRDPYALDLIDKLLVLDPAQRIDSDDALNH 312 (351)
T ss_dssp SHHHHHHHHHHHHCCCCTTTSTTGGGCGGGTSSCCCSSCCCCHHHHHHHHHCCHHHHHHHHHHSCSSGGGSCCHHHHHTS
T ss_pred ChHHHHHHHHHHhCCCChhhccccccchhhcccccccccccCHHHHhhhccCChHHHHHHHHHhcCChhhCCCHHHHhCC
Confidence 100 0000000000 0000 0000 000001113568899999999999999999999874
No 233
>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7
Probab=100.00 E-value=9.8e-38 Score=355.73 Aligned_cols=261 Identities=27% Similarity=0.408 Sum_probs=206.2
Q ss_pred HHHhcCCccCceeccCcceEEEEEEECCCceEEEEEEeeccCCcchhHHHHHHHHHhhcCCCccceEeeEeecCCCCCCc
Q 040925 527 SKATGEFSSSNMIGQGSFGYVYKGTLGEDEMIVAVKVINLKYKGASRSFVAECEALRNIRHRNLIKIITICSSTDFKGTD 606 (833)
Q Consensus 527 ~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~ 606 (833)
....++|++.+.||+|+||.||+|++.. +..||||+++... ...+.+.+|+++|++++||||+++++++.. .
T Consensus 263 ~i~~~~~~~~~~lG~G~fg~Vy~~~~~~-~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~hpniv~~~~~~~~------~ 334 (535)
T 2h8h_A 263 EIPRESLRLEVKLGQGCFGEVWMGTWNG-TTRVAIKTLKPGT-MSPEAFLQEAQVMKKLRHEKLVQLYAVVSE------E 334 (535)
T ss_dssp BCCGGGEEEEEEEEECSSEEEEEEEETT-TEEEEEEEECTTS-SCHHHHHHHHHHHHHCCCTTBCCEEEEECS------S
T ss_pred ecchhhhhhheecccCCCeEEEEEEECC-CceEEEEEeCCCC-CCHHHHHHHHHHHHhCCCCCEeeEEEEEee------c
Confidence 3445679999999999999999999974 5679999997543 345689999999999999999999999754 2
Q ss_pred eEeEEEEecCCCChhhhhccCCCccccccCCHHHHHHHHHHHHHHHHHHhhcCCCCceeeCCCCCCeeecCCCcEEEccc
Q 040925 607 FKAFVFEYMENGSLKDWLHQSDDQVEVCKLSLIQRVNIAIDVASAMEYLHHHCQPPMVHGDLKPSNVLLDHDMVAHVCDF 686 (833)
Q Consensus 607 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~gL~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kL~Df 686 (833)
..++||||+++|+|.+++..... ..+++.+++.++.||+.||+|||++ +|+||||||+|||++.++.+||+||
T Consensus 335 ~~~lv~e~~~~gsL~~~l~~~~~----~~l~~~~~~~i~~qi~~~L~~LH~~---~ivHrDlkp~NIll~~~~~~kl~DF 407 (535)
T 2h8h_A 335 PIYIVTEYMSKGSLLDFLKGETG----KYLRLPQLVDMAAQIASGMAYVERM---NYVHRDLRAANILVGENLVCKVADF 407 (535)
T ss_dssp SCEEEECCCTTEEHHHHHSHHHH----TTCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECGGGCEEECCT
T ss_pred cceEeeehhcCCcHHHHHhhcCC----CCCCHHHHHHHHHHHHHHHHHHHhC---CeeCCCCCHhhEEEcCCCcEEEccc
Confidence 57899999999999999975321 1589999999999999999999999 9999999999999999999999999
Q ss_pred ccccccCcccccccccCCCccccccccccccCccccCCCCCCcccccccCCcCCCccccCCccHHHHHH-HhCCCccccc
Q 040925 687 GLAKFLSDHQLDTAVKTPSSSIGLKGTVGYVAPEYGMGSEASMTGDIFTGRRPIDAVFNEGHSLHEFAK-TALPEKVMEI 765 (833)
Q Consensus 687 G~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~s~~~~~~~~~~~g~~l~~~~~-~~~p~~~~~~ 765 (833)
|+++......... .....+|..|+|||++.+..++.++|||| +|++++++++ +..|+.....
T Consensus 408 G~a~~~~~~~~~~-------~~~~~~~~~y~aPE~~~~~~~~~~sDvwS----------lGv~l~el~t~g~~P~~~~~~ 470 (535)
T 2h8h_A 408 GLARLIEDNEYTA-------RQGAKFPIKWTAPEAALYGRFTIKSDVWS----------FGILLTELTTKGRVPYPGMVN 470 (535)
T ss_dssp TSTTTCCCHHHHT-------TCSTTSCGGGSCHHHHHHCCCCHHHHHHH----------HHHHHHHHTTTTCCSSTTCCH
T ss_pred ccceecCCCceec-------ccCCcCcccccCHHHhccCCCCchhhHHH----------HHHHHHHHHhCCCCCCCCCCH
Confidence 9998765432211 11234788999999998889999999999 7777778777 6666542111
Q ss_pred ccccchhhhccccchhhhhhhhchHHHHHHHHHHhhccCCCCCCCCCCHHHHHHHHHHhhhh
Q 040925 766 VDPSLLMEVMTNNSMIQEDKRVKTEECLNAIIRTGVLCSMESPFERMDMRDVVAKLCHTRET 827 (833)
Q Consensus 766 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~i~~~ 827 (833)
.......... . ....+..++..+.++|.+||+.||++|||+++|++.|+.+...
T Consensus 471 --~~~~~~i~~~-~-----~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~~l~~~L~~~~~~ 524 (535)
T 2h8h_A 471 --REVLDQVERG-Y-----RMPCPPECPESLHDLMCQCWRKEPEERPTFEYLQAFLEDYFTS 524 (535)
T ss_dssp --HHHHHHHHTT-C-----CCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTSSCC
T ss_pred --HHHHHHHHcC-C-----CCCCCCCCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHhhc
Confidence 1111111110 0 0111234567789999999999999999999999999988654
No 234
>1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET: 824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A* 3cr0_A* 2in6_A* 2io6_A* 2z2w_A*
Probab=100.00 E-value=2.5e-37 Score=325.49 Aligned_cols=249 Identities=20% Similarity=0.232 Sum_probs=195.2
Q ss_pred HhcCCccCceeccCcceEEEEEEECCCceEEEEEEeeccC--CcchhHHHHHHHHHhhc-CCCccceEeeEeecCCCCCC
Q 040925 529 ATGEFSSSNMIGQGSFGYVYKGTLGEDEMIVAVKVINLKY--KGASRSFVAECEALRNI-RHRNLIKIITICSSTDFKGT 605 (833)
Q Consensus 529 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l-~h~niv~~~~~~~~~~~~~~ 605 (833)
..++|++.+.||+|+||.||+|++..+++.||+|+++... ......+.+|+..+.++ +||||+++++++...+
T Consensus 9 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~~~~l~~h~~iv~~~~~~~~~~---- 84 (289)
T 1x8b_A 9 YTTEFHELEKIGSGEFGSVFKCVKRLDGCIYAIKRSKKPLAGSVDEQNALREVYAHAVLGQHSHVVRYFSAWAEDD---- 84 (289)
T ss_dssp HHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCCTTSHHHHHHHHHHHHHHHSCSCTTBCCEEEEEEETT----
T ss_pred ccchhhhhhhhcCCCceEEEEEEEcCCCceEEEEEecccccccHHHHHHHHHHHHHHHhCCCCCeeeeeeeeecCC----
Confidence 3568999999999999999999999899999999997542 23456788999999999 8999999999986655
Q ss_pred ceEeEEEEecCCCChhhhhccCCCccccccCCHHHHHHHHHHHHHHHHHHhhcCCCCceeeCCCCCCeeecCC-------
Q 040925 606 DFKAFVFEYMENGSLKDWLHQSDDQVEVCKLSLIQRVNIAIDVASAMEYLHHHCQPPMVHGDLKPSNVLLDHD------- 678 (833)
Q Consensus 606 ~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~gL~~LH~~~~~~ivH~Dlkp~NIll~~~------- 678 (833)
..++||||+++|+|.+++...... ...+++.+++.++.|++.||+|||+. +|+||||||+||+++.+
T Consensus 85 -~~~lv~e~~~~~~L~~~l~~~~~~--~~~~~~~~~~~i~~qi~~al~~lH~~---~ivH~Dikp~NIl~~~~~~~~~~~ 158 (289)
T 1x8b_A 85 -HMLIQNEYCNGGSLADAISENYRI--MSYFKEAELKDLLLQVGRGLRYIHSM---SLVHMDIKPSNIFISRTSIPNAAS 158 (289)
T ss_dssp -EEEEEEECCTTCBHHHHHHHHHHH--TCCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEC---------
T ss_pred -eEEEEEEecCCCcHHHHHHhhccc--ccCCCHHHHHHHHHHHHHHHHHHHhC---CEeecCCCHHHEEEcCCCCCcccc
Confidence 899999999999999999864211 12689999999999999999999999 99999999999999844
Q ss_pred ------------CcEEEcccccccccCcccccccccCCCccccccccccccCccccCCC-CCCcccccccCCcCCCcccc
Q 040925 679 ------------MVAHVCDFGLAKFLSDHQLDTAVKTPSSSIGLKGTVGYVAPEYGMGS-EASMTGDIFTGRRPIDAVFN 745 (833)
Q Consensus 679 ------------~~~kL~DfG~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~Di~s~~~~~~~~~~ 745 (833)
..+||+|||.+....... ...||+.|+|||++.+. .++.++||||
T Consensus 159 ~~~~~~~~~~~~~~~kl~Dfg~~~~~~~~~------------~~~gt~~y~aPE~~~~~~~~~~~~Di~s---------- 216 (289)
T 1x8b_A 159 EEGDEDDWASNKVMFKIGDLGHVTRISSPQ------------VEEGDSRFLANEVLQENYTHLPKADIFA---------- 216 (289)
T ss_dssp -----------CCCEEECCCTTCEETTCSC------------CCCCCGGGCCHHHHTTCCTTHHHHHHHH----------
T ss_pred cccccccccCCceEEEEcccccccccCCcc------------ccCCCccccChhHhcCCCCCCchhhHHH----------
Confidence 479999999998664422 13499999999998776 5678999999
Q ss_pred CCccHHHHHHHhCCCcccccccccchhhhccccchhhhhhhhchHHHHHHHHHHhhccCCCCCCCCCCHHHHHHH
Q 040925 746 EGHSLHEFAKTALPEKVMEIVDPSLLMEVMTNNSMIQEDKRVKTEECLNAIIRTGVLCSMESPFERMDMRDVVAK 820 (833)
Q Consensus 746 ~g~~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~ 820 (833)
+|++++++.++..++...+.. ........ ...+..+++.+.+++.+||+.||++|||++|+++.
T Consensus 217 lG~il~~l~~~~~~~~~~~~~-----~~~~~~~~------~~~~~~~~~~~~~li~~~l~~dp~~Rps~~~ll~h 280 (289)
T 1x8b_A 217 LALTVVCAAGAEPLPRNGDQW-----HEIRQGRL------PRIPQVLSQEFTELLKVMIHPDPERRPSAMALVKH 280 (289)
T ss_dssp HHHHHHHHTTCCCCCSSSHHH-----HHHHTTCC------CCCSSCCCHHHHHHHHHHTCSSGGGSCCHHHHHTC
T ss_pred HHHHHHHHhcCCCCCcchhHH-----HHHHcCCC------CCCCcccCHHHHHHHHHHhCCCcccCCCHHHHhhC
Confidence 667777777666543321110 01111100 01112345678899999999999999999999864
No 235
>3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens}
Probab=100.00 E-value=2.7e-37 Score=333.18 Aligned_cols=252 Identities=22% Similarity=0.305 Sum_probs=191.5
Q ss_pred hcCCccCceeccCcceEEEEEEECCCceEEEEEEeeccCCc--chhHHHHHHHHHhhcCC--CccceEeeEeecCCCCCC
Q 040925 530 TGEFSSSNMIGQGSFGYVYKGTLGEDEMIVAVKVINLKYKG--ASRSFVAECEALRNIRH--RNLIKIITICSSTDFKGT 605 (833)
Q Consensus 530 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~--~~~~~~~E~~~l~~l~h--~niv~~~~~~~~~~~~~~ 605 (833)
.++|++.+.||+|+||.||+|.+. +++.||||+++..... ..+.+.+|++++++++| |||+++++++....
T Consensus 8 ~~~y~i~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~iv~~~~~~~~~~---- 82 (343)
T 3dbq_A 8 GRIYSILKQIGSGGSSKVFQVLNE-KKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITDQ---- 82 (343)
T ss_dssp SCEEEEEEEESCCSSEEEEEEECT-TSCEEEEEEEECTTCCHHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSS----
T ss_pred cCEEEEEEEEecCCCeEEEEEEeC-CCCEEEEEEeeccccchHHHHHHHHHHHHHHhhhhcCCceEEEeeeEeeCC----
Confidence 357999999999999999999985 6889999999754322 34678999999999986 99999999976655
Q ss_pred ceEeEEEEecCCCChhhhhccCCCccccccCCHHHHHHHHHHHHHHHHHHhhcCCCCceeeCCCCCCeeecCCCcEEEcc
Q 040925 606 DFKAFVFEYMENGSLKDWLHQSDDQVEVCKLSLIQRVNIAIDVASAMEYLHHHCQPPMVHGDLKPSNVLLDHDMVAHVCD 685 (833)
Q Consensus 606 ~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~gL~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kL~D 685 (833)
..++|||| .+|+|.+++.... .+++.++..++.|++.||+|||+. +|+||||||+||+++ ++.+||+|
T Consensus 83 -~~~lv~e~-~~~~L~~~l~~~~------~~~~~~~~~i~~qi~~al~~lH~~---~iiHrDikp~NIll~-~~~~kl~D 150 (343)
T 3dbq_A 83 -YIYMVMEC-GNIDLNSWLKKKK------SIDPWERKSYWKNMLEAVHTIHQH---GIVHSDLKPANFLIV-DGMLKLID 150 (343)
T ss_dssp -EEEEEECC-CSEEHHHHHHHSC------CCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEEE-TTEEEECC
T ss_pred -EEEEEEeC-CCCCHHHHHHhcC------CCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCcceEEEE-CCcEEEee
Confidence 89999995 5789999998754 689999999999999999999999 999999999999997 67899999
Q ss_pred cccccccCcccccccccCCCccccccccccccCccccCC-----------CCCCcccccccCCcCCCccccCCccHHHHH
Q 040925 686 FGLAKFLSDHQLDTAVKTPSSSIGLKGTVGYVAPEYGMG-----------SEASMTGDIFTGRRPIDAVFNEGHSLHEFA 754 (833)
Q Consensus 686 fG~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-----------~~~~~~~Di~s~~~~~~~~~~~g~~l~~~~ 754 (833)
||+++........ .......||+.|+|||++.+ ..++.++|||| +|+++++++
T Consensus 151 FG~a~~~~~~~~~------~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~~~~Diws----------lG~il~ell 214 (343)
T 3dbq_A 151 FGIANQMQPDTTS------VVKDSQVGTVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWS----------LGCILYYMT 214 (343)
T ss_dssp CSSSCCC------------------CCCCSSCCHHHHHHCC-----------CCHHHHHHH----------HHHHHHHHH
T ss_pred cccccccCccccc------ccCCCCcCCcCcCCHHHHhhccccccccccccCCCchhhHHH----------HHHHHHHHH
Confidence 9999876543211 11223569999999998754 67899999999 888999999
Q ss_pred HHhCCCcccccccccchhhhccccchhhhhhhhchHHHHHHHHHHhhccCCCCCCCCCCHHHHHHH
Q 040925 755 KTALPEKVMEIVDPSLLMEVMTNNSMIQEDKRVKTEECLNAIIRTGVLCSMESPFERMDMRDVVAK 820 (833)
Q Consensus 755 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~ 820 (833)
++..|+....... ........... ....+...+..+.+++.+||+.||++|||+.|+++.
T Consensus 215 ~g~~pf~~~~~~~-~~~~~~~~~~~-----~~~~~~~~~~~l~~li~~~L~~dp~~Rpt~~e~l~h 274 (343)
T 3dbq_A 215 YGKTPFQQIINQI-SKLHAIIDPNH-----EIEFPDIPEKDLQDVLKCCLKRDPKQRISIPELLAH 274 (343)
T ss_dssp HSSCTTTTCCSHH-HHHHHHHCTTS-----CCCCCCCSCHHHHHHHHHHTCSSTTTSCCHHHHHTS
T ss_pred hCCCcchhhhhHH-HHHHHHhcCCc-----ccCCcccCCHHHHHHHHHHcCCChhHCCCHHHHHhC
Confidence 9998875211000 00000000000 000111224567899999999999999999999875
No 236
>3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI, structural genomics, protein structure initiative; HET: TPO; 2.20A {Homo sapiens}
Probab=100.00 E-value=8.3e-37 Score=325.57 Aligned_cols=253 Identities=23% Similarity=0.306 Sum_probs=198.8
Q ss_pred HhcCCccCceeccCcceEEEEEEECCCceEEEEEEeeccCCcchhHHHHHHHHHhhcCCCccceEeeEeecCCCCCCceE
Q 040925 529 ATGEFSSSNMIGQGSFGYVYKGTLGEDEMIVAVKVINLKYKGASRSFVAECEALRNIRHRNLIKIITICSSTDFKGTDFK 608 (833)
Q Consensus 529 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~ 608 (833)
..++|++.+.||+|+||.||+|.+..+++.||+|.+... ...+.+.+|+.++++++||||+++++++.... ..
T Consensus 27 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~--~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~-----~~ 99 (314)
T 3com_A 27 PEEVFDVLEKLGEGSYGSVYKAIHKETGQIVAIKQVPVE--SDLQEIIKEISIMQQCDSPHVVKYYGSYFKNT-----DL 99 (314)
T ss_dssp ---CEEEEEECC----CEEEEEEETTTCCEEEEEEEETT--SCCHHHHHHHHHHHTCCCTTBCCEEEEEEETT-----EE
T ss_pred chhhhhhheeeccCCCeEEEEEEECCCCCEEEEEecCch--HHHHHHHHHHHHHHhCCCCCCccEEEEEEeCC-----EE
Confidence 456899999999999999999999989999999999753 34567899999999999999999999986654 88
Q ss_pred eEEEEecCCCChhhhhccCCCccccccCCHHHHHHHHHHHHHHHHHHhhcCCCCceeeCCCCCCeeecCCCcEEEccccc
Q 040925 609 AFVFEYMENGSLKDWLHQSDDQVEVCKLSLIQRVNIAIDVASAMEYLHHHCQPPMVHGDLKPSNVLLDHDMVAHVCDFGL 688 (833)
Q Consensus 609 ~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~gL~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kL~DfG~ 688 (833)
++||||+++|+|.+++..... .+++..++.++.|++.||.|||+. +|+||||||+||+++.++.+||+|||+
T Consensus 100 ~lv~e~~~~~~L~~~~~~~~~-----~~~~~~~~~i~~~i~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~kl~dfg~ 171 (314)
T 3com_A 100 WIVMEYCGAGSVSDIIRLRNK-----TLTEDEIATILQSTLKGLEYLHFM---RKIHRDIKAGNILLNTEGHAKLADFGV 171 (314)
T ss_dssp EEEEECCTTEEHHHHHHHHTC-----CCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTCCEEECCCTT
T ss_pred EEEeecCCCCCHHHHHHhcCC-----CCCHHHHHHHHHHHHHHHHHHHhC---CCcCCCcCHHHEEECCCCCEEEeeccc
Confidence 999999999999999974321 689999999999999999999999 999999999999999999999999999
Q ss_pred ccccCcccccccccCCCccccccccccccCccccCCCCCCcccccccCCcCCCccccCCccHHHHHHHhCCCcccccccc
Q 040925 689 AKFLSDHQLDTAVKTPSSSIGLKGTVGYVAPEYGMGSEASMTGDIFTGRRPIDAVFNEGHSLHEFAKTALPEKVMEIVDP 768 (833)
Q Consensus 689 a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~s~~~~~~~~~~~g~~l~~~~~~~~p~~~~~~~~~ 768 (833)
+........ ......||+.|+|||++.+..++.++|||| +|+++++++++..|+........
T Consensus 172 ~~~~~~~~~--------~~~~~~~~~~y~aPE~~~~~~~~~~~Di~s----------lG~il~~l~~g~~p~~~~~~~~~ 233 (314)
T 3com_A 172 AGQLTDTMA--------KRNTVIGTPFWMAPEVIQEIGYNCVADIWS----------LGITAIEMAEGKPPYADIHPMRA 233 (314)
T ss_dssp CEECBTTBS--------CBCCCCSCGGGCCHHHHSSSCBCTTHHHHH----------HHHHHHHHHHSSCTTTTSCHHHH
T ss_pred chhhhhhcc--------ccCccCCCCCccChhhcCCCCCCccccHHH----------HHHHHHHHHhCCCCCCCCChHHH
Confidence 976544221 112346999999999999989999999999 88889999999888753221111
Q ss_pred cchhhhccccchhhhhhhhchHHHHHHHHHHhhccCCCCCCCCCCHHHHHHH
Q 040925 769 SLLMEVMTNNSMIQEDKRVKTEECLNAIIRTGVLCSMESPFERMDMRDVVAK 820 (833)
Q Consensus 769 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~ 820 (833)
.. ....... .....+..++..+.+++.+||..||++|||+.++++.
T Consensus 234 ~~--~~~~~~~----~~~~~~~~~~~~l~~li~~~l~~dp~~Rpt~~~ll~~ 279 (314)
T 3com_A 234 IF--MIPTNPP----PTFRKPELWSDNFTDFVKQCLVKSPEQRATATQLLQH 279 (314)
T ss_dssp HH--HHHHSCC----CCCSSGGGSCHHHHHHHHHHTCSCTTTSCCHHHHTTS
T ss_pred HH--HHhcCCC----cccCCcccCCHHHHHHHHHHccCChhhCcCHHHHHhC
Confidence 00 0000000 0001122345678899999999999999999999863
No 237
>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A*
Probab=100.00 E-value=1.3e-37 Score=339.53 Aligned_cols=261 Identities=10% Similarity=-0.043 Sum_probs=183.5
Q ss_pred hcCCccCceeccCcceEEEEEEECCCceEEEEEEeeccCC---cchhHHHHHHHHHhhc--CCCccceEe-------eEe
Q 040925 530 TGEFSSSNMIGQGSFGYVYKGTLGEDEMIVAVKVINLKYK---GASRSFVAECEALRNI--RHRNLIKII-------TIC 597 (833)
Q Consensus 530 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~---~~~~~~~~E~~~l~~l--~h~niv~~~-------~~~ 597 (833)
..+|++.+.||+|+||.||+|++..+++.||||+++.... ...+.+.+|+.+++.+ +||||++++ +++
T Consensus 61 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~~~~l~~~hp~iv~~~~~~~~p~d~~ 140 (371)
T 3q60_A 61 ERKLKLVEPLRVGDRSVVFLVRDVERLEDFALKVFTMGAENSRSELERLHEATFAAARLLGESPEEARDRRRLLLPSDAV 140 (371)
T ss_dssp EEEEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEECCSTTHHHHHHHHHHHHHHHHHHHC----------CBCCCCEEE
T ss_pred ceeeeeeeeccCCCCEEEEEEEECCCCceeEEEEEEecccccccHHHHHHHHHHHHHHhcccChhhhhhceeEEeeehhe
Confidence 3459999999999999999999999999999999986543 2345677886555555 699988855 333
Q ss_pred ecCCCC------------CCceEeEEEEecCCCChhhhhccCCCccccccCCHHHH------HHHHHHHHHHHHHHhhcC
Q 040925 598 SSTDFK------------GTDFKAFVFEYMENGSLKDWLHQSDDQVEVCKLSLIQR------VNIAIDVASAMEYLHHHC 659 (833)
Q Consensus 598 ~~~~~~------------~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~------~~i~~qi~~gL~~LH~~~ 659 (833)
...... .....|+||||++ |+|.+++..... .+++..+ ..++.|++.||+|||++
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~-~~L~~~l~~~~~-----~~~~~~~~~~~vk~~i~~qi~~aL~~LH~~- 213 (371)
T 3q60_A 141 AVQSQPPFAQLSPGQDDYAVANYLLLMPAAS-VDLELLFSTLDF-----VYVFRGDEGILALHILTAQLIRLAANLQSK- 213 (371)
T ss_dssp EETTSCSSSBCSCC---CCEEEEEEEECCCS-EEHHHHHHHHHH-----SCCCCHHHHHHHHHHHHHHHHHHHHHHHHT-
T ss_pred ecCCCCCeeeccCCcccceeeeEEEEecCCC-CCHHHHHHHhcc-----ccchhhhhhhhhHHHHHHHHHHHHHHHHHC-
Confidence 222100 0145899999998 899999986432 3444555 67789999999999999
Q ss_pred CCCceeeCCCCCCeeecCCCcEEEcccccccccCcccccccccCCCccccccccccccCccccCC--CCCCcccccccCC
Q 040925 660 QPPMVHGDLKPSNVLLDHDMVAHVCDFGLAKFLSDHQLDTAVKTPSSSIGLKGTVGYVAPEYGMG--SEASMTGDIFTGR 737 (833)
Q Consensus 660 ~~~ivH~Dlkp~NIll~~~~~~kL~DfG~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~--~~~~~~~Di~s~~ 737 (833)
+|+||||||+||+++.++.+||+|||+|+....... ...||+.|+|||++.+ ..++.++||||
T Consensus 214 --~ivHrDikp~NIll~~~~~~kL~DFG~a~~~~~~~~-----------~~~~t~~y~aPE~~~~~~~~~~~~~DiwS-- 278 (371)
T 3q60_A 214 --GLVHGHFTPDNLFIMPDGRLMLGDVSALWKVGTRGP-----------ASSVPVTYAPREFLNASTATFTHALNAWQ-- 278 (371)
T ss_dssp --TEEETTCSGGGEEECTTSCEEECCGGGEEETTCEEE-----------GGGSCGGGCCHHHHTCSEEECCHHHHHHH--
T ss_pred --CCccCcCCHHHEEECCCCCEEEEecceeeecCCCcc-----------CccCCcCCcChhhccCCCCCcCccccHHH--
Confidence 999999999999999999999999999986643221 2347799999999987 77999999999
Q ss_pred cCCCccccCCccHHHHHHHhCCCcccccccccchhhhccccchhhhhhhhchHHHHHHHHHHhhccCCCCCCCCCCHHHH
Q 040925 738 RPIDAVFNEGHSLHEFAKTALPEKVMEIVDPSLLMEVMTNNSMIQEDKRVKTEECLNAIIRTGVLCSMESPFERMDMRDV 817 (833)
Q Consensus 738 ~~~~~~~~~g~~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~ei 817 (833)
+|+++++++++..|+...............................+++.+.+++.+||+.||++|||+.|+
T Consensus 279 --------lG~il~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~ 350 (371)
T 3q60_A 279 --------LGLSIYRVWCLFLPFGLVTPGIKGSWKRPSLRVPGTDSLAFGSCTPLPDFVKTLIGRFLNFDRRRRLLPLEA 350 (371)
T ss_dssp --------HHHHHHHHHHSSCSTTBCCTTCTTCCCBCCTTSCCCCSCCCTTSSCCCHHHHHHHHHHTCSSTTTCCCHHHH
T ss_pred --------HHHHHHHHHhCCCCCCCcCcccccchhhhhhhhccccccchhhccCCCHHHHHHHHHHcCCChhhCCCHHHH
Confidence 888999999999987633211111000000000000000001112346678999999999999999999999
Q ss_pred HHH
Q 040925 818 VAK 820 (833)
Q Consensus 818 l~~ 820 (833)
++.
T Consensus 351 l~h 353 (371)
T 3q60_A 351 MET 353 (371)
T ss_dssp TTS
T ss_pred hcC
Confidence 763
No 238
>2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase; HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A* 2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A*
Probab=100.00 E-value=1.8e-37 Score=332.62 Aligned_cols=266 Identities=21% Similarity=0.318 Sum_probs=200.0
Q ss_pred hcCCccCceeccCcceEEEEEE-----ECCCceEEEEEEeeccC-CcchhHHHHHHHHHhhcCCCccceEeeEeecCCCC
Q 040925 530 TGEFSSSNMIGQGSFGYVYKGT-----LGEDEMIVAVKVINLKY-KGASRSFVAECEALRNIRHRNLIKIITICSSTDFK 603 (833)
Q Consensus 530 ~~~y~~~~~lg~G~~g~Vy~~~-----~~~~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~ 603 (833)
.++|++.+.||+|+||.||+|+ ...+++.||||++.... ......+.+|+.++++++||||+++++++....
T Consensus 29 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~-- 106 (327)
T 2yfx_A 29 RKNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQNIVRCIGVSLQSL-- 106 (327)
T ss_dssp GGGCEEEEECC--CSSCEEEEEC--------CCEEEEEECCSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSS--
T ss_pred hhheEEEEEEcCCCCeeEEEEEEcCCCCCCccceEEEEEeccccchhhHHHHHHHHHHHhhCCCCCCCeEEEEEcCCC--
Confidence 4689999999999999999999 44578899999996432 234467899999999999999999999976544
Q ss_pred CCceEeEEEEecCCCChhhhhccCCCcc-ccccCCHHHHHHHHHHHHHHHHHHhhcCCCCceeeCCCCCCeeecC---CC
Q 040925 604 GTDFKAFVFEYMENGSLKDWLHQSDDQV-EVCKLSLIQRVNIAIDVASAMEYLHHHCQPPMVHGDLKPSNVLLDH---DM 679 (833)
Q Consensus 604 ~~~~~~lv~e~~~~gsL~~~l~~~~~~~-~~~~l~~~~~~~i~~qi~~gL~~LH~~~~~~ivH~Dlkp~NIll~~---~~ 679 (833)
..++||||+++|+|.+++....... ....+++.+++.++.|++.||.|||+. +|+||||||+||+++. +.
T Consensus 107 ---~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~al~~LH~~---~i~H~dlkp~NIli~~~~~~~ 180 (327)
T 2yfx_A 107 ---PRFILMELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACGCQYLEEN---HFIHRDIAARNCLLTCPGPGR 180 (327)
T ss_dssp ---SCEEEEECCTTEEHHHHHHHTSCCSSSTTSCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEESCSSTTC
T ss_pred ---CcEEEEecCCCCcHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHHHhhC---CeecCcCCHhHEEEecCCCcc
Confidence 6799999999999999998754221 112589999999999999999999999 9999999999999984 44
Q ss_pred cEEEcccccccccCcccccccccCCCccccccccccccCccccCCCCCCcccccccCCcCCCccccCCccHHHHHH-HhC
Q 040925 680 VAHVCDFGLAKFLSDHQLDTAVKTPSSSIGLKGTVGYVAPEYGMGSEASMTGDIFTGRRPIDAVFNEGHSLHEFAK-TAL 758 (833)
Q Consensus 680 ~~kL~DfG~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~s~~~~~~~~~~~g~~l~~~~~-~~~ 758 (833)
.+||+|||+++........ .......||+.|+|||++.+..++.++|||| +|++++++++ +..
T Consensus 181 ~~kl~Dfg~~~~~~~~~~~------~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~s----------lG~il~ellt~g~~ 244 (327)
T 2yfx_A 181 VAKIGDFGMARDIYRASYY------RKGGCAMLPVKWMPPEAFMEGIFTSKTDTWS----------FGVLLWEIFSLGYM 244 (327)
T ss_dssp CEEECCCHHHHHHHC------------CCGGGSCGGGCCHHHHHHCCCCHHHHHHH----------HHHHHHHHHTTSCC
T ss_pred eEEECcccccccccccccc------ccCCCcCCCcceeCHhHhcCCCCCchhhHHH----------HHHHHHHHHcCCCC
Confidence 6999999999755332211 1112345899999999998889999999999 7778888886 666
Q ss_pred CCcccccccccchhhhccccchhhhhhhhchHHHHHHHHHHhhccCCCCCCCCCCHHHHHHHHHHhhhh
Q 040925 759 PEKVMEIVDPSLLMEVMTNNSMIQEDKRVKTEECLNAIIRTGVLCSMESPFERMDMRDVVAKLCHTRET 827 (833)
Q Consensus 759 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~i~~~ 827 (833)
|+..... ............ ......++..+.+++.+||+.||++|||+.|+++.++.+...
T Consensus 245 p~~~~~~--~~~~~~~~~~~~------~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~l~~~~~~ 305 (327)
T 2yfx_A 245 PYPSKSN--QEVLEFVTSGGR------MDPPKNCPGPVYRIMTQCWQHQPEDRPNFAIILERIEYCTQD 305 (327)
T ss_dssp SSTTCCH--HHHHHHHHTTCC------CCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHC
T ss_pred CCCCcCH--HHHHHHHhcCCC------CCCCCCCCHHHHHHHHHHhcCChhhCcCHHHHHHHHHHHhcC
Confidence 6542211 111111111100 011223456788999999999999999999999999988653
No 239
>2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens}
Probab=100.00 E-value=1.5e-37 Score=333.26 Aligned_cols=268 Identities=22% Similarity=0.319 Sum_probs=202.2
Q ss_pred ccchHHHHHHhcCCccCceeccCcceEEEEEEECCCceEEEEEEeeccCCcchhHHHHHHHHHhhc-CCCccceEeeEee
Q 040925 520 MVSYAELSKATGEFSSSNMIGQGSFGYVYKGTLGEDEMIVAVKVINLKYKGASRSFVAECEALRNI-RHRNLIKIITICS 598 (833)
Q Consensus 520 ~~~~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~~~~~~~ 598 (833)
.++..++....++|++.+.||+|+||.||+|++..+++.||||++.... ...+.+.+|+.+++++ +||||+++++++.
T Consensus 13 ~~~~~~l~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~-~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~ 91 (326)
T 2x7f_A 13 EIDLSALRDPAGIFELVELVGNGTYGQVYKGRHVKTGQLAAIKVMDVTG-DEEEEIKQEINMLKKYSHHRNIATYYGAFI 91 (326)
T ss_dssp ---CCCCCCCTTTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCS-STTHHHHHHHHHHHHHCCSTTBCCEEEEEE
T ss_pred hccchhccCCCCcEEEEEEeccCCCEEEEEEEECCCCCeEEEEEEecCc-ccHHHHHHHHHHHHhccCCCCeeeeeeEEe
Confidence 3455555667789999999999999999999999899999999997443 3457889999999999 7999999999987
Q ss_pred cCCCC-CCceEeEEEEecCCCChhhhhccCCCccccccCCHHHHHHHHHHHHHHHHHHhhcCCCCceeeCCCCCCeeecC
Q 040925 599 STDFK-GTDFKAFVFEYMENGSLKDWLHQSDDQVEVCKLSLIQRVNIAIDVASAMEYLHHHCQPPMVHGDLKPSNVLLDH 677 (833)
Q Consensus 599 ~~~~~-~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~gL~~LH~~~~~~ivH~Dlkp~NIll~~ 677 (833)
..... .....++||||+++|+|.+++...... .+++..++.++.|++.||+|||+. ||+||||||+||+++.
T Consensus 92 ~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~----~~~~~~~~~i~~qi~~~l~~lH~~---~ivH~dlkp~NIl~~~ 164 (326)
T 2x7f_A 92 KKNPPGMDDQLWLVMEFCGAGSVTDLIKNTKGN----TLKEEWIAYICREILRGLSHLHQH---KVIHRDIKGQNVLLTE 164 (326)
T ss_dssp ECC--CCCCEEEEEEECCTTEEHHHHHHHSGGG----CCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCSGGGEEECT
T ss_pred eccCccccceEEEEEEcCCCCcHHHHHHhcccC----CCCHHHHHHHHHHHHHHHHHHHHC---CccccCCcHHHEEEcC
Confidence 64311 135789999999999999999865322 689999999999999999999999 9999999999999999
Q ss_pred CCcEEEcccccccccCcccccccccCCCccccccccccccCccccC-----CCCCCcccccccCCcCCCccccCCccHHH
Q 040925 678 DMVAHVCDFGLAKFLSDHQLDTAVKTPSSSIGLKGTVGYVAPEYGM-----GSEASMTGDIFTGRRPIDAVFNEGHSLHE 752 (833)
Q Consensus 678 ~~~~kL~DfG~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~-----~~~~~~~~Di~s~~~~~~~~~~~g~~l~~ 752 (833)
++.+||+|||++........ ......||+.|+|||++. +..++.++|||| +|+++++
T Consensus 165 ~~~~kl~Dfg~~~~~~~~~~--------~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~s----------lG~il~~ 226 (326)
T 2x7f_A 165 NAEVKLVDFGVSAQLDRTVG--------RRNTFIGTPYWMAPEVIACDENPDATYDFKSDLWS----------LGITAIE 226 (326)
T ss_dssp TCCEEECCCTTTC---------------------CCGGGCCHHHHC--------CCTTHHHHH----------HHHHHHH
T ss_pred CCCEEEeeCcCceecCcCcc--------ccccccCCccccChhhhccccccCcCCCccchHHH----------HHHHHHH
Confidence 99999999999986543211 112346999999999986 567899999999 8888999
Q ss_pred HHHHhCCCcccccccccchhhhccccchhhhhhhhchHHHHHHHHHHhhccCCCCCCCCCCHHHHHHH
Q 040925 753 FAKTALPEKVMEIVDPSLLMEVMTNNSMIQEDKRVKTEECLNAIIRTGVLCSMESPFERMDMRDVVAK 820 (833)
Q Consensus 753 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~ 820 (833)
++++..|+........ ........ ........++..+.+++.+||..||++|||++|+++.
T Consensus 227 l~~g~~p~~~~~~~~~--~~~~~~~~-----~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~h 287 (326)
T 2x7f_A 227 MAEGAPPLCDMHPMRA--LFLIPRNP-----APRLKSKKWSKKFQSFIESCLVKNHSQRPATEQLMKH 287 (326)
T ss_dssp HHHSSCTTTTSCHHHH--HHHHHHSC-----CCCCSCSCSCHHHHHHHHHHCCSSGGGSCCHHHHHTS
T ss_pred HHhCCCCCCCCcHHHH--HHHhhcCc-----cccCCccccCHHHHHHHHHHhccChhhCCCHHHHhhC
Confidence 9999888752221110 00000000 0011112245678899999999999999999999874
No 240
>3nsz_A CK II alpha, casein kinase II subunit alpha; inhibitor, transferase-transferase inhibitor CO; HET: ANP; 1.30A {Homo sapiens} SCOP: d.144.1.7 PDB: 2r7i_A 3pe1_A* 1jwh_A* 3pe2_A* 3r0t_A* 3h30_A* 3q9w_A* 3q9x_A* 3q9y_A* 3q9z_A* 3qa0_A 3bqc_A* 2rkp_A* 3c13_A* 3fwq_A 3rps_A* 3u9c_A* 4fbx_A* 3mb7_A* 3mb6_A* ...
Probab=100.00 E-value=1.9e-36 Score=325.16 Aligned_cols=253 Identities=19% Similarity=0.223 Sum_probs=197.0
Q ss_pred cCCccCceeccCcceEEEEEEECCCceEEEEEEeeccCCcchhHHHHHHHHHhhcC-CCccceEeeEeecCCCCCCceEe
Q 040925 531 GEFSSSNMIGQGSFGYVYKGTLGEDEMIVAVKVINLKYKGASRSFVAECEALRNIR-HRNLIKIITICSSTDFKGTDFKA 609 (833)
Q Consensus 531 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~-h~niv~~~~~~~~~~~~~~~~~~ 609 (833)
++|++.+.||+|+||.||+|++..+++.||||+++. ...+.+.+|++++++++ ||||+++++++.... ....+
T Consensus 36 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~---~~~~~~~~E~~~l~~l~~~~~i~~~~~~~~~~~---~~~~~ 109 (330)
T 3nsz_A 36 DDYQLVRKLGRGKYSEVFEAINITNNEKVVVKILKP---VKKKKIKREIKILENLRGGPNIITLADIVKDPV---SRTPA 109 (330)
T ss_dssp GGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECS---CCHHHHHHHHHHHHHHTTSTTBCCEEEEEECTT---TCCEE
T ss_pred CceEEEEEecccCCeEEEEEEECCCCcEEEEEEecc---cchHHHHHHHHHHHHcCCCCCEEEeeeeeccCC---CCceE
Confidence 679999999999999999999999999999999963 34577899999999997 999999999986532 34789
Q ss_pred EEEEecCCCChhhhhccCCCccccccCCHHHHHHHHHHHHHHHHHHhhcCCCCceeeCCCCCCeeecCCC-cEEEccccc
Q 040925 610 FVFEYMENGSLKDWLHQSDDQVEVCKLSLIQRVNIAIDVASAMEYLHHHCQPPMVHGDLKPSNVLLDHDM-VAHVCDFGL 688 (833)
Q Consensus 610 lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~gL~~LH~~~~~~ivH~Dlkp~NIll~~~~-~~kL~DfG~ 688 (833)
+||||+++++|.+++. .+++.+++.++.|++.||+|||+. +|+||||||+||+++.++ .+||+|||+
T Consensus 110 lv~e~~~~~~l~~~~~---------~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~Dikp~Nil~~~~~~~~kl~Dfg~ 177 (330)
T 3nsz_A 110 LVFEHVNNTDFKQLYQ---------TLTDYDIRFYMYEILKALDYCHSM---GIMHRDVKPHNVMIDHEHRKLRLIDWGL 177 (330)
T ss_dssp EEEECCCCCCHHHHGG---------GCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEEETTTTEEEECCCTT
T ss_pred EEEeccCchhHHHHHH---------hCCHHHHHHHHHHHHHHHHHHHhC---CeeeCCCCHHHEEEcCCCCEEEEEeCCC
Confidence 9999999999999885 478899999999999999999999 999999999999999777 899999999
Q ss_pred ccccCcccccccccCCCccccccccccccCccccCC-CCCCcccccccCCcCCCccccCCccHHHHHHHhCCCccccccc
Q 040925 689 AKFLSDHQLDTAVKTPSSSIGLKGTVGYVAPEYGMG-SEASMTGDIFTGRRPIDAVFNEGHSLHEFAKTALPEKVMEIVD 767 (833)
Q Consensus 689 a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Di~s~~~~~~~~~~~g~~l~~~~~~~~p~~~~~~~~ 767 (833)
|+....... .....||+.|+|||++.+ ..++.++|||| .|+++++++++..|+.......
T Consensus 178 a~~~~~~~~---------~~~~~~~~~y~aPE~~~~~~~~~~~~Diws----------lG~il~~ll~g~~p~~~~~~~~ 238 (330)
T 3nsz_A 178 AEFYHPGQE---------YNVRVASRYFKGPELLVDYQMYDYSLDMWS----------LGCMLASMIFRKEPFFHGHDNY 238 (330)
T ss_dssp CEECCTTCC---------CCSCCSCGGGCCHHHHTTCCCCCTHHHHHH----------HHHHHHHHHHTCSSSSCCSSHH
T ss_pred ceEcCCCCc---------cccccccccccChhhhcCCCcCCchhhHHH----------HHHHHHHHHhCCCCcccCCchH
Confidence 986544221 123468999999999877 67899999999 7888888888888863111000
Q ss_pred ccc-----------hhhhccc-cc-----------------hhhhhhhhchHHHHHHHHHHhhccCCCCCCCCCCHHHHH
Q 040925 768 PSL-----------LMEVMTN-NS-----------------MIQEDKRVKTEECLNAIIRTGVLCSMESPFERMDMRDVV 818 (833)
Q Consensus 768 ~~~-----------~~~~~~~-~~-----------------~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil 818 (833)
..+ ..+.... .. ............+++.+.+++.+||+.||++|||++|++
T Consensus 239 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpta~e~l 318 (330)
T 3nsz_A 239 DQLVRIAKVLGTEDLYDYIDKYNIELDPRFNDILGRHSRKRWERFVHSENQHLVSPEALDFLDKLLRYDHQSRLTAREAM 318 (330)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHTTCCCCTHHHHHHCCCCCCCGGGGCCTTTGGGCCHHHHHHHHTTSCSSGGGSCCHHHHH
T ss_pred HHHHHHHHhcCCchhhhHHHHhccccccchhhhhhhccccchhhhccccccccCCHHHHHHHHHHhcCCcccCCCHHHHh
Confidence 000 0000000 00 000000011112467789999999999999999999998
Q ss_pred HH
Q 040925 819 AK 820 (833)
Q Consensus 819 ~~ 820 (833)
+.
T Consensus 319 ~h 320 (330)
T 3nsz_A 319 EH 320 (330)
T ss_dssp TS
T ss_pred cC
Confidence 74
No 241
>2xrw_A Mitogen-activated protein kinase 8; transcription, MAPK signaling pathways, linear binding motif; HET: ANP; 1.33A {Homo sapiens} PDB: 1ukh_A 1uki_A* 2xs0_A* 3elj_A* 2h96_A* 2gmx_A* 2g01_A* 2no3_A* 3o2m_A* 3o17_A* 3pze_A* 3g9l_X* 2p33_A* 3cgf_A* 3cgo_A* 3g90_X* 2ok1_A* 3g9n_A* 1pmn_A* 1pmq_A* ...
Probab=100.00 E-value=2e-36 Score=329.78 Aligned_cols=260 Identities=18% Similarity=0.234 Sum_probs=193.5
Q ss_pred hcCCccCceeccCcceEEEEEEECCCceEEEEEEeeccCC--cchhHHHHHHHHHhhcCCCccceEeeEeecCC-CCCCc
Q 040925 530 TGEFSSSNMIGQGSFGYVYKGTLGEDEMIVAVKVINLKYK--GASRSFVAECEALRNIRHRNLIKIITICSSTD-FKGTD 606 (833)
Q Consensus 530 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~--~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~-~~~~~ 606 (833)
.++|++.+.||+|+||.||+|++..+++.||||++..... ...+.+.+|+.+++.++||||+++++++.... .....
T Consensus 24 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~ 103 (371)
T 2xrw_A 24 LKRYQNLKPIGSGAQGIVCAAYDAILERNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIIGLLNVFTPQKSLEEFQ 103 (371)
T ss_dssp ETTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEECTTSSHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSCCSTTTCC
T ss_pred hhheeEeeeeEecCCEEEEEEEECCCCceEEEEEeccccCChHHHHHHHHHHHHHHhcCCCCccceEEeecccccccccc
Confidence 4689999999999999999999999999999999975422 23467889999999999999999999986543 22334
Q ss_pred eEeEEEEecCCCChhhhhccCCCccccccCCHHHHHHHHHHHHHHHHHHhhcCCCCceeeCCCCCCeeecCCCcEEEccc
Q 040925 607 FKAFVFEYMENGSLKDWLHQSDDQVEVCKLSLIQRVNIAIDVASAMEYLHHHCQPPMVHGDLKPSNVLLDHDMVAHVCDF 686 (833)
Q Consensus 607 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~gL~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kL~Df 686 (833)
..++||||+++ +|.+++.. .+++..+..++.|++.||+|||+. ||+||||||+||+++.++.+||+||
T Consensus 104 ~~~lv~e~~~~-~l~~~~~~--------~~~~~~~~~i~~qi~~al~~lH~~---~ivH~Dlkp~NIl~~~~~~~kl~Df 171 (371)
T 2xrw_A 104 DVYIVMELMDA-NLCQVIQM--------ELDHERMSYLLYQMLCGIKHLHSA---GIIHRDLKPSNIVVKSDCTLKILDF 171 (371)
T ss_dssp EEEEEEECCSE-EHHHHHHS--------CCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTSCEEECCC
T ss_pred ceEEEEEcCCC-CHHHHHhh--------ccCHHHHHHHHHHHHHHHHHHHHC---CeecccCCHHHEEEcCCCCEEEEEe
Confidence 78999999974 88888853 588999999999999999999999 9999999999999999999999999
Q ss_pred ccccccCcccccccccCCCccccccccccccCccccCCCCCCcccccccCCcCCCccccCCccHHHHHHHhCCCcccccc
Q 040925 687 GLAKFLSDHQLDTAVKTPSSSIGLKGTVGYVAPEYGMGSEASMTGDIFTGRRPIDAVFNEGHSLHEFAKTALPEKVMEIV 766 (833)
Q Consensus 687 G~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~s~~~~~~~~~~~g~~l~~~~~~~~p~~~~~~~ 766 (833)
|+|+...... ......||+.|+|||++.+..++.++|||| .|+++++++++..|+......
T Consensus 172 g~a~~~~~~~---------~~~~~~gt~~y~aPE~~~~~~~~~~~Diws----------lG~il~el~~g~~pf~~~~~~ 232 (371)
T 2xrw_A 172 GLARTAGTSF---------MMTPYVVTRYYRAPEVILGMGYKENVDIWS----------VGCIMGEMIKGGVLFPGTDHI 232 (371)
T ss_dssp CC-------------------------CTTCCHHHHTTCCCCTTHHHHH----------HHHHHHHHHHSSCSSCCSSHH
T ss_pred eccccccccc---------ccCCceecCCccCHHHhcCCCCCchHhHHH----------HHHHHHHHHhCCCCCCCCCHH
Confidence 9998654321 112346999999999999999999999999 788888888888876522111
Q ss_pred cc-------------cchhh-------hccccc-------------hhhhhhhhchHHHHHHHHHHhhccCCCCCCCCCC
Q 040925 767 DP-------------SLLME-------VMTNNS-------------MIQEDKRVKTEECLNAIIRTGVLCSMESPFERMD 813 (833)
Q Consensus 767 ~~-------------~~~~~-------~~~~~~-------------~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt 813 (833)
+. ..... ...... ...+.........+..+.+++.+||..||++|||
T Consensus 233 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~mL~~dP~~R~t 312 (371)
T 2xrw_A 233 DQWNKVIEQLGTPCPEFMKKLQPTVRTYVENRPKYAGYSFEKLFPDVLFPADSEHNKLKASQARDLLSKMLVIDASKRIS 312 (371)
T ss_dssp HHHHHHHC-CCCCCHHHHTTSCHHHHHHHHSSCCCCCCCHHHHSCGGGSCCSSHHHHHHHHHHHHHHHHHSCSSGGGSCC
T ss_pred HHHHHHHHHhCCCCHHHHHHhhhHHHHHHhhCccccccchhhhcccccCcccccccccccHHHHHHHHHHCcCChhhCCC
Confidence 00 00000 000000 0000011112334678999999999999999999
Q ss_pred HHHHHHH
Q 040925 814 MRDVVAK 820 (833)
Q Consensus 814 ~~eil~~ 820 (833)
++|+++.
T Consensus 313 ~~e~l~h 319 (371)
T 2xrw_A 313 VDEALQH 319 (371)
T ss_dssp HHHHHHS
T ss_pred HHHHhCC
Confidence 9999875
No 242
>1phk_A Phosphorylase kinase; glycogen metabolism, transferase, serine/threonine-protein, ATP-binding, calmodulin-binding; HET: ATP; 2.20A {Oryctolagus cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A*
Probab=100.00 E-value=9.6e-37 Score=322.50 Aligned_cols=253 Identities=23% Similarity=0.301 Sum_probs=202.0
Q ss_pred HhcCCccCceeccCcceEEEEEEECCCceEEEEEEeeccCC---------cchhHHHHHHHHHhhcC-CCccceEeeEee
Q 040925 529 ATGEFSSSNMIGQGSFGYVYKGTLGEDEMIVAVKVINLKYK---------GASRSFVAECEALRNIR-HRNLIKIITICS 598 (833)
Q Consensus 529 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~---------~~~~~~~~E~~~l~~l~-h~niv~~~~~~~ 598 (833)
..++|++.+.||+|+||.||+|++..+++.||||+++.... ...+.+.+|+++++++. ||||+++++++.
T Consensus 15 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~ 94 (298)
T 1phk_A 15 FYENYEPKEILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDILRKVSGHPNIIQLKDTYE 94 (298)
T ss_dssp CTTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEETTCSTTCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEEEEEE
T ss_pred hhhccceeeeecCCCceEEEEEEEcCcCceEEEEEEecccccccCHHHHHHHHHHHHHHHHHHHHhcCCCCEeeeeeeec
Confidence 35689999999999999999999999999999999975431 12356789999999996 999999999976
Q ss_pred cCCCCCCceEeEEEEecCCCChhhhhccCCCccccccCCHHHHHHHHHHHHHHHHHHhhcCCCCceeeCCCCCCeeecCC
Q 040925 599 STDFKGTDFKAFVFEYMENGSLKDWLHQSDDQVEVCKLSLIQRVNIAIDVASAMEYLHHHCQPPMVHGDLKPSNVLLDHD 678 (833)
Q Consensus 599 ~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~gL~~LH~~~~~~ivH~Dlkp~NIll~~~ 678 (833)
... ..++||||+++|+|.+++.... .+++..++.++.|++.||.|||+. +|+||||||+||+++.+
T Consensus 95 ~~~-----~~~lv~e~~~~~~L~~~l~~~~------~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dl~p~Nil~~~~ 160 (298)
T 1phk_A 95 TNT-----FFFLVFDLMKKGELFDYLTEKV------TLSEKETRKIMRALLEVICALHKL---NIVHRDLKPENILLDDD 160 (298)
T ss_dssp CSS-----EEEEEEECCTTCBHHHHHHHHS------SCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTT
T ss_pred cCC-----eEEEEEeccCCCcHHHHHhccC------CCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCcceEEEcCC
Confidence 554 8999999999999999998643 689999999999999999999999 99999999999999999
Q ss_pred CcEEEcccccccccCcccccccccCCCccccccccccccCccccC------CCCCCcccccccCCcCCCccccCCccHHH
Q 040925 679 MVAHVCDFGLAKFLSDHQLDTAVKTPSSSIGLKGTVGYVAPEYGM------GSEASMTGDIFTGRRPIDAVFNEGHSLHE 752 (833)
Q Consensus 679 ~~~kL~DfG~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~------~~~~~~~~Di~s~~~~~~~~~~~g~~l~~ 752 (833)
+.+||+|||++....... ......||+.|+|||++. ...++.++|||| .|+++++
T Consensus 161 ~~~kl~dfg~~~~~~~~~---------~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~~Di~s----------lG~~l~~ 221 (298)
T 1phk_A 161 MNIKLTDFGFSCQLDPGE---------KLREVCGTPSYLAPEIIECSMNDNHPGYGKEVDMWS----------TGVIMYT 221 (298)
T ss_dssp CCEEECCCTTCEECCTTC---------CBCCCCSCGGGCCHHHHHHHHCTTSCCBCTHHHHHH----------HHHHHHH
T ss_pred CcEEEecccchhhcCCCc---------ccccccCCccccCHHHhccccccccccCCcccccHh----------HHHHHHH
Confidence 999999999998654322 112346999999999874 456889999999 8889999
Q ss_pred HHHHhCCCcccccccccchhhhccccchhhhhhhhchHHHHHHHHHHhhccCCCCCCCCCCHHHHHH
Q 040925 753 FAKTALPEKVMEIVDPSLLMEVMTNNSMIQEDKRVKTEECLNAIIRTGVLCSMESPFERMDMRDVVA 819 (833)
Q Consensus 753 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~ 819 (833)
++++..|+...... ............. .......++..+.+++.+||+.||++|||++|+++
T Consensus 222 l~~g~~p~~~~~~~--~~~~~~~~~~~~~---~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~ 283 (298)
T 1phk_A 222 LLAGSPPFWHRKQM--LMLRMIMSGNYQF---GSPEWDDYSDTVKDLVSRFLVVQPQKRYTAEEALA 283 (298)
T ss_dssp HHHSSCSSCCSSHH--HHHHHHHHTCCCC---CTTTGGGSCHHHHHHHHHHCCSSGGGSCCHHHHTT
T ss_pred HHHCCCCCcCccHH--HHHHHHhcCCccc---CcccccccCHHHHHHHHHHccCCcccCCCHHHHHh
Confidence 99998887532211 1111111111100 01112235667899999999999999999999986
No 243
>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A*
Probab=100.00 E-value=1.1e-36 Score=333.50 Aligned_cols=251 Identities=22% Similarity=0.298 Sum_probs=191.9
Q ss_pred cCCccCceeccCcceEEEEEEECCCceEEEEEEeeccCC--cchhHHHHHHHHHhhcC--CCccceEeeEeecCCCCCCc
Q 040925 531 GEFSSSNMIGQGSFGYVYKGTLGEDEMIVAVKVINLKYK--GASRSFVAECEALRNIR--HRNLIKIITICSSTDFKGTD 606 (833)
Q Consensus 531 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~--~~~~~~~~E~~~l~~l~--h~niv~~~~~~~~~~~~~~~ 606 (833)
.+|++.+.||+|+||.||+|.+. +++.||||++..... ...+.+.+|++++++++ ||||+++++++...+
T Consensus 56 ~~y~~~~~LG~G~fg~Vy~~~~~-~~~~vaiK~~~~~~~~~~~~~~~~~Ei~~l~~l~~~~~~iv~~~~~~~~~~----- 129 (390)
T 2zmd_A 56 RIYSILKQIGSGGSSKVFQVLNE-KKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITDQ----- 129 (390)
T ss_dssp EEEEEEEEEECCSSEEEEEEECT-TCCEEEEEEEECTTCCHHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSS-----
T ss_pred CceEEEEEEccCCCeEEEEEEcC-CCCEEEEEEEecccccHHHHHHHHHHHHHHHHcccCCCeEEEEEEEEecCC-----
Confidence 46999999999999999999987 489999999975432 23467899999999996 599999999976655
Q ss_pred eEeEEEEecCCCChhhhhccCCCccccccCCHHHHHHHHHHHHHHHHHHhhcCCCCceeeCCCCCCeeecCCCcEEEccc
Q 040925 607 FKAFVFEYMENGSLKDWLHQSDDQVEVCKLSLIQRVNIAIDVASAMEYLHHHCQPPMVHGDLKPSNVLLDHDMVAHVCDF 686 (833)
Q Consensus 607 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~gL~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kL~Df 686 (833)
..++||| +.+|+|.+++.... .+++.+++.++.||+.||.|||+. +|+||||||+||+++ ++.+||+||
T Consensus 130 ~~~lv~E-~~~~~L~~~l~~~~------~~~~~~~~~i~~qi~~aL~~lH~~---~ivHrDlkp~NIll~-~~~~kl~DF 198 (390)
T 2zmd_A 130 YIYMVME-CGNIDLNSWLKKKK------SIDPWERKSYWKNMLEAVHTIHQH---GIVHSDLKPANFLIV-DGMLKLIDF 198 (390)
T ss_dssp EEEEEEE-CCSEEHHHHHHHCS------SCCHHHHHHHHHHHHHHHHHHHTT---TCCCCCCCGGGEEES-SSCEEECCC
T ss_pred EEEEEEe-cCCCCHHHHHHhcC------CCCHHHHHHHHHHHHHHHHHHHHC---CeeecCCCHHHEEEE-CCeEEEEec
Confidence 7999999 55789999998754 688999999999999999999999 999999999999995 689999999
Q ss_pred ccccccCcccccccccCCCccccccccccccCccccCC-----------CCCCcccccccCCcCCCccccCCccHHHHHH
Q 040925 687 GLAKFLSDHQLDTAVKTPSSSIGLKGTVGYVAPEYGMG-----------SEASMTGDIFTGRRPIDAVFNEGHSLHEFAK 755 (833)
Q Consensus 687 G~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-----------~~~~~~~Di~s~~~~~~~~~~~g~~l~~~~~ 755 (833)
|+++.+...... ......+||+.|+|||++.+ ..++.++|||| +|++++++++
T Consensus 199 G~a~~~~~~~~~------~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~~~~DiwS----------lGvil~ell~ 262 (390)
T 2zmd_A 199 GIANQMQPDTTS------VVKDSQVGAVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWS----------LGCILYYMTY 262 (390)
T ss_dssp SSSCCC---------------CCSCCCGGGCCHHHHHCC------------CCHHHHHHH----------HHHHHHHHHH
T ss_pred CccccccCCCcc------ccCCCCCcCCCccChHHhhhccccccccccccCCCChhhHHH----------HHHHHHHHHH
Confidence 999876543211 11223569999999998765 46899999999 8889999999
Q ss_pred HhCCCcccccccccchhhhccccchhhhhhhhchHHHHHHHHHHhhccCCCCCCCCCCHHHHHHH
Q 040925 756 TALPEKVMEIVDPSLLMEVMTNNSMIQEDKRVKTEECLNAIIRTGVLCSMESPFERMDMRDVVAK 820 (833)
Q Consensus 756 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~ 820 (833)
+..|+...... ............. ...+...+..+.+++.+||..||++|||+.|+++.
T Consensus 263 G~~Pf~~~~~~-~~~~~~~~~~~~~-----~~~~~~~~~~~~~li~~~L~~dP~~Rps~~ell~h 321 (390)
T 2zmd_A 263 GKTPFQQIINQ-ISKLHAIIDPNHE-----IEFPDIPEKDLQDVLKCCLKRDPKQRISIPELLAH 321 (390)
T ss_dssp SSCTTTTCCCH-HHHHHHHHCTTSC-----CCCCCCSCHHHHHHHHHHTCSSTTTSCCHHHHHTS
T ss_pred CCCcchhhhHH-HHHHHHHhCcccc-----CCCCccchHHHHHHHHHHcccChhhCCCHHHHhhC
Confidence 99887521100 0000111110000 00011124568899999999999999999999864
No 244
>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A
Probab=100.00 E-value=7.1e-37 Score=356.70 Aligned_cols=251 Identities=22% Similarity=0.251 Sum_probs=204.0
Q ss_pred HHhcCCccCceeccCcceEEEEEEECCCceEEEEEEeecc---CCcchhHHHHHHHHHhhc-CCCccceEeeEeecCCCC
Q 040925 528 KATGEFSSSNMIGQGSFGYVYKGTLGEDEMIVAVKVINLK---YKGASRSFVAECEALRNI-RHRNLIKIITICSSTDFK 603 (833)
Q Consensus 528 ~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~---~~~~~~~~~~E~~~l~~l-~h~niv~~~~~~~~~~~~ 603 (833)
...++|++.+.||+|+||.||+|++..+++.||||+++.. .....+.+..|.+++..+ +||+|+++++++.+.
T Consensus 338 ~~~~~f~~~~~LG~G~fG~V~~~~~~~~~~~vAvK~l~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~l~~~~~~~--- 414 (674)
T 3pfq_A 338 MKLTDFNFLMVLGKGSFGKVMLSERKGTDELYAVKILKKDVVIQDDDVECTMVEKRVLALPGKPPFLTQLHSCFQTM--- 414 (674)
T ss_dssp --CTTEEEEEESSBTTTBCEEEEEESSSCCEEEEEEEEHHHHHHTTTTHHHHHHHHHHTCTTCCTTBCCEEEECBCS---
T ss_pred ccccceEEEEEEccCCCEEEEEEEECCCCcEEEEEEEeccccccHHHHHHHHHHHHHHHhccCCCeEEEEEEEEEeC---
Confidence 3457899999999999999999999999999999999743 233456788999999988 699999999996544
Q ss_pred CCceEeEEEEecCCCChhhhhccCCCccccccCCHHHHHHHHHHHHHHHHHHhhcCCCCceeeCCCCCCeeecCCCcEEE
Q 040925 604 GTDFKAFVFEYMENGSLKDWLHQSDDQVEVCKLSLIQRVNIAIDVASAMEYLHHHCQPPMVHGDLKPSNVLLDHDMVAHV 683 (833)
Q Consensus 604 ~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~gL~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kL 683 (833)
...|+||||+++|+|.+++...+ .+++.+++.|+.||+.||+|||+. +||||||||+|||++.++.+||
T Consensus 415 --~~~~lV~E~~~gg~L~~~l~~~~------~~~~~~~~~~~~qi~~aL~~LH~~---gIiHrDLKp~NILl~~~g~ikL 483 (674)
T 3pfq_A 415 --DRLYFVMEYVNGGDLMYHIQQVG------RFKEPHAVFYAAEIAIGLFFLQSK---GIIYRDLKLDNVMLDSEGHIKI 483 (674)
T ss_dssp --SEEEEEEECCCSCBHHHHHHHHS------SCCHHHHHHHHHHHHHHHHHHHHT---SEECCCCCSTTEEECSSSCEEE
T ss_pred --CEEEEEEeCcCCCcHHHHHHhcC------CCCHHHHHHHHHHHHHHHHHHHhC---CeEeccCChhhEEEcCCCcEEE
Confidence 48999999999999999998654 689999999999999999999999 9999999999999999999999
Q ss_pred cccccccccCcccccccccCCCccccccccccccCccccCCCCCCcccccccCCcCCCccccCCccHHHHHHHhCCCccc
Q 040925 684 CDFGLAKFLSDHQLDTAVKTPSSSIGLKGTVGYVAPEYGMGSEASMTGDIFTGRRPIDAVFNEGHSLHEFAKTALPEKVM 763 (833)
Q Consensus 684 ~DfG~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~s~~~~~~~~~~~g~~l~~~~~~~~p~~~~ 763 (833)
+|||+|+...... ......+||+.|+|||++.+..++.++|||| +|+++|+++++..|+...
T Consensus 484 ~DFGla~~~~~~~--------~~~~~~~GT~~Y~APE~l~~~~~~~~~DvwS----------lGvilyelltG~~Pf~~~ 545 (674)
T 3pfq_A 484 ADFGMCKENIWDG--------VTTKTFCGTPDYIAPEIIAYQPYGKSVDWWA----------FGVLLYEMLAGQAPFEGE 545 (674)
T ss_dssp CCCTTCEECCCTT--------CCBCCCCSCSSSCCHHHHTCCCBSTHHHHHH----------HHHHHHHHHHSSCSSCCS
T ss_pred eecceeeccccCC--------cccccccCCCcccCHhhhcCCCCCccceEec----------hHHHHHHHHcCCCCCCCC
Confidence 9999998543221 1223467999999999999999999999999 889999999999998632
Q ss_pred ccccccchhhhccccchhhhhhhhchHHHHHHHHHHhhccCCCCCCCCCCH-----HHHHH
Q 040925 764 EIVDPSLLMEVMTNNSMIQEDKRVKTEECLNAIIRTGVLCSMESPFERMDM-----RDVVA 819 (833)
Q Consensus 764 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~-----~eil~ 819 (833)
+. ............ ..+...++.+.+++.+||+.||++||++ +||++
T Consensus 546 ~~--~~~~~~i~~~~~-------~~p~~~s~~~~~li~~lL~~dP~~R~~~~~~~~~ei~~ 597 (674)
T 3pfq_A 546 DE--DELFQSIMEHNV-------AYPKSMSKEAVAICKGLMTKHPGKRLGCGPEGERDIKE 597 (674)
T ss_dssp SH--HHHHHHHHSSCC-------CCCTTSCHHHHHHHHHHSCSSSTTCTTCSTTHHHHHHS
T ss_pred CH--HHHHHHHHhCCC-------CCCccCCHHHHHHHHHHccCCHHHCCCCCCCcHHHHhc
Confidence 21 111111111111 1122346678999999999999999997 66654
No 245
>2ycf_A Serine/threonine-protein kinase CHK2; transferase, anticancer, anticancer drug design; HET: YCF; 1.77A {Homo sapiens} PDB: 2yiq_A* 2w7x_A* 2ycq_A* 2ycs_A* 2w0j_A* 2yir_A* 2yit_A* 2wtj_A* 2cn8_A* 2wtc_A* 2wtd_A* 2wti_A* 2cn5_A* 2xbj_A* 2xm8_A* 2xm9_A* 2xk9_A* 2ycr_A*
Probab=100.00 E-value=1.7e-36 Score=324.22 Aligned_cols=253 Identities=24% Similarity=0.255 Sum_probs=196.4
Q ss_pred HhcCCccCceeccCcceEEEEEEECCCceEEEEEEeeccC--------CcchhHHHHHHHHHhhcCCCccceEeeEeecC
Q 040925 529 ATGEFSSSNMIGQGSFGYVYKGTLGEDEMIVAVKVINLKY--------KGASRSFVAECEALRNIRHRNLIKIITICSST 600 (833)
Q Consensus 529 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~--------~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~ 600 (833)
..++|++.+.||+|+||.||+|++..+++.||||++.... ......+.+|++++++++||||+++++++...
T Consensus 8 l~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~ 87 (322)
T 2ycf_A 8 LRDEYIMSKTLGSGACGEVKLAFERKTCKKVAIKIISKRKFAIGSAREADPALNVETEIEILKKLNHPCIIKIKNFFDAE 87 (322)
T ss_dssp HHHHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECC---------------CHHHHHHHHHHCCCTTBCCEEEEEESS
T ss_pred hhhceeEeeEEecCCCEEEEEEEEcCCCcEEEEEEeehhhhhhcccccchhhhhHHHHHHHHHhCCCCCCceEeeEEcCC
Confidence 3467999999999999999999999999999999986432 11234688999999999999999999997543
Q ss_pred CCCCCceEeEEEEecCCCChhhhhccCCCccccccCCHHHHHHHHHHHHHHHHHHhhcCCCCceeeCCCCCCeeecCCCc
Q 040925 601 DFKGTDFKAFVFEYMENGSLKDWLHQSDDQVEVCKLSLIQRVNIAIDVASAMEYLHHHCQPPMVHGDLKPSNVLLDHDMV 680 (833)
Q Consensus 601 ~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~gL~~LH~~~~~~ivH~Dlkp~NIll~~~~~ 680 (833)
..++||||+++|+|.+++.... .+++..++.++.|++.||+|||+. +|+||||||+||+++.++.
T Consensus 88 ------~~~lv~e~~~~~~L~~~~~~~~------~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~dlkp~NIl~~~~~~ 152 (322)
T 2ycf_A 88 ------DYYIVLELMEGGELFDKVVGNK------RLKEATCKLYFYQMLLAVQYLHEN---GIIHRDLKPENVLLSSQEE 152 (322)
T ss_dssp ------SEEEEEECCTTEETHHHHSTTC------CCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEESSSSS
T ss_pred ------ceEEEEecCCCCcHHHHHhccC------CCCHHHHHHHHHHHHHHHHHHHHC---CeeccCCCHHHEEEecCCC
Confidence 3799999999999999997654 689999999999999999999999 9999999999999987654
Q ss_pred ---EEEcccccccccCcccccccccCCCccccccccccccCccccC---CCCCCcccccccCCcCCCccccCCccHHHHH
Q 040925 681 ---AHVCDFGLAKFLSDHQLDTAVKTPSSSIGLKGTVGYVAPEYGM---GSEASMTGDIFTGRRPIDAVFNEGHSLHEFA 754 (833)
Q Consensus 681 ---~kL~DfG~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~---~~~~~~~~Di~s~~~~~~~~~~~g~~l~~~~ 754 (833)
+||+|||+++....... .....||+.|+|||++. ...++.++|||| +|+++++++
T Consensus 153 ~~~~kl~Dfg~~~~~~~~~~---------~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~s----------lG~il~~l~ 213 (322)
T 2ycf_A 153 DCLIKITDFGHSKILGETSL---------MRTLCGTPTYLAPEVLVSVGTAGYNRAVDCWS----------LGVILFICL 213 (322)
T ss_dssp SCCEEECCCTTCEECCCCHH---------HHHHHSCCTTCCHHHHHHTTTTTCTTHHHHHH----------HHHHHHHHH
T ss_pred CCeEEEccCccceecccccc---------cccccCCcCccCchhhccCCCCCCCchhhHHH----------HHHHHHHHH
Confidence 99999999987644221 11246899999999863 567899999999 888999999
Q ss_pred HHhCCCcccccccccchhhhccccchhhhhhhhchHHHHHHHHHHhhccCCCCCCCCCCHHHHHH
Q 040925 755 KTALPEKVMEIVDPSLLMEVMTNNSMIQEDKRVKTEECLNAIIRTGVLCSMESPFERMDMRDVVA 819 (833)
Q Consensus 755 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~ 819 (833)
++..|+....... .............. ......++..+.+++.+||..||++|||++|+++
T Consensus 214 ~g~~pf~~~~~~~-~~~~~~~~~~~~~~---~~~~~~~~~~~~~li~~~l~~dP~~Rps~~~~l~ 274 (322)
T 2ycf_A 214 SGYPPFSEHRTQV-SLKDQITSGKYNFI---PEVWAEVSEKALDLVKKLLVVDPKARFTTEEALR 274 (322)
T ss_dssp HSSCSSCSTTCSS-CHHHHHHHTCCCCC---HHHHTTSCHHHHHHHHHHSCSSTTTSCCHHHHHT
T ss_pred hCCCCCcccchHH-HHHHHHHhCccccC---chhhhhcCHHHHHHHHHHcccCHhhCCCHHHHhh
Confidence 9998875322110 11111111110000 0111234667899999999999999999999985
No 246
>3kvw_A DYRK2, dual specificity tyrosine-phosphorylation-regulat 2; KI-(Y)-phosphorylation REG kinase 2, PSK-H2, kinase, structural genomics consortium; HET: SEP PTR IRB; 2.28A {Homo sapiens} PDB: 3k2l_A* 4azf_A*
Probab=100.00 E-value=1.6e-36 Score=336.35 Aligned_cols=197 Identities=24% Similarity=0.316 Sum_probs=168.6
Q ss_pred hcCCccCceeccCcceEEEEEEECCCceEEEEEEeeccCCcchhHHHHHHHHHhhc------CCCccceEeeEeecCCCC
Q 040925 530 TGEFSSSNMIGQGSFGYVYKGTLGEDEMIVAVKVINLKYKGASRSFVAECEALRNI------RHRNLIKIITICSSTDFK 603 (833)
Q Consensus 530 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l------~h~niv~~~~~~~~~~~~ 603 (833)
..+|++.+.||+|+||.||+|++..+++.||||+++.. ....+.+.+|+++++.+ +|+||+++++++....
T Consensus 96 ~~ry~~~~~LG~G~fg~V~~a~~~~~~~~vAvK~~~~~-~~~~~~~~~E~~~l~~l~~~~~~~~~~iv~~~~~~~~~~-- 172 (429)
T 3kvw_A 96 AYRYEVLKVIGKGSFGQVVKAYDHKVHQHVALKMVRNE-KRFHRQAAEEIRILEHLRKQDKDNTMNVIHMLENFTFRN-- 172 (429)
T ss_dssp TTTEEEEEEEEESSSEEEEEEEETTTTEEEEEEEECSC-HHHHHHHHHHHHHHHHHHTTCTTSCSCBCCEEEEEEETT--
T ss_pred cCcEEEEEEcccCccEEEEEEEECCCCcEEEEEEECCc-cchHHHHHHHHHHHHHHhhccccCCcCEEEEEeecccCC--
Confidence 35799999999999999999999999999999999643 22345678899988887 5779999999976654
Q ss_pred CCceEeEEEEecCCCChhhhhccCCCccccccCCHHHHHHHHHHHHHHHHHHhhcCCCCceeeCCCCCCeeecCCCc--E
Q 040925 604 GTDFKAFVFEYMENGSLKDWLHQSDDQVEVCKLSLIQRVNIAIDVASAMEYLHHHCQPPMVHGDLKPSNVLLDHDMV--A 681 (833)
Q Consensus 604 ~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~gL~~LH~~~~~~ivH~Dlkp~NIll~~~~~--~ 681 (833)
..++||||++ |+|.+++...... .+++..++.++.||+.||+|||+. +|+||||||+||+++.++. +
T Consensus 173 ---~~~lv~e~~~-~~L~~~l~~~~~~----~~~~~~~~~i~~qi~~aL~~LH~~---~ivHrDlKp~NILl~~~~~~~v 241 (429)
T 3kvw_A 173 ---HICMTFELLS-MNLYELIKKNKFQ----GFSLPLVRKFAHSILQCLDALHKN---RIIHCDLKPENILLKQQGRSGI 241 (429)
T ss_dssp ---EEEEEECCCC-CBHHHHHHHTTTC----CCCHHHHHHHHHHHHHHHHHHHHH---TEECSCCSGGGEEESSTTSCCE
T ss_pred ---eEEEEEeccC-CCHHHHHHhccCC----CCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHeEEccCCCcce
Confidence 8999999996 6999999876532 589999999999999999999999 9999999999999999987 9
Q ss_pred EEcccccccccCcccccccccCCCccccccccccccCccccCCCCCCcccccccCCcCCCccccCCccHHHHHHHhCCCc
Q 040925 682 HVCDFGLAKFLSDHQLDTAVKTPSSSIGLKGTVGYVAPEYGMGSEASMTGDIFTGRRPIDAVFNEGHSLHEFAKTALPEK 761 (833)
Q Consensus 682 kL~DfG~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~s~~~~~~~~~~~g~~l~~~~~~~~p~~ 761 (833)
||+|||+|+..... .....||+.|+|||++.+..++.++|||| +|+++++++++..|+.
T Consensus 242 kL~DFG~a~~~~~~-----------~~~~~gt~~y~aPE~~~~~~~~~~~DiwS----------lG~il~elltG~~pf~ 300 (429)
T 3kvw_A 242 KVIDFGSSCYEHQR-----------VYTYIQSRFYRAPEVILGARYGMPIDMWS----------LGCILAELLTGYPLLP 300 (429)
T ss_dssp EECCCTTCEETTCC-----------CCSSCSCGGGCCHHHHHTBCCCTHHHHHH----------HHHHHHHHHHSSCSSC
T ss_pred EEeecccceecCCc-----------ccccCCCCCccChHHHhCCCCCchHHHHh----------HHHHHHHHHhCCCCCC
Confidence 99999999754332 12346999999999999999999999999 7778888888877654
No 247
>3eb0_A Putative uncharacterized protein; kinase cryptosporidium parvum, ATP-binding, kinase, nucleoti binding; HET: PTR DRK; 2.65A {Cryptosporidium parvum iowa II}
Probab=100.00 E-value=7.6e-37 Score=334.86 Aligned_cols=263 Identities=21% Similarity=0.249 Sum_probs=194.9
Q ss_pred HHHhcCCccCceeccCcceEEEEEEECCCceEEEEEEeeccCCcchhHHHHHHHHHhhcCCCccceEeeEeecCCC----
Q 040925 527 SKATGEFSSSNMIGQGSFGYVYKGTLGEDEMIVAVKVINLKYKGASRSFVAECEALRNIRHRNLIKIITICSSTDF---- 602 (833)
Q Consensus 527 ~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~---- 602 (833)
....++|++.+.||+|+||.||+|++..+++.||||++.... ....+|+++++.++||||+++++++.....
T Consensus 3 ~~~~~~y~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~~~~~~----~~~~~E~~il~~l~hpnIv~l~~~~~~~~~~~~~ 78 (383)
T 3eb0_A 3 ETSSKKYSLGKTLGTGSFGIVCEVFDIESGKRFALKKVLQDP----RYKNRELDIMKVLDHVNIIKLVDYFYTTGDEEPK 78 (383)
T ss_dssp ---CTTEEEEEEEECC-CEEEEEEEETTTCCEEEEEEEECCT----TSCCHHHHHHTTCCCTTBCCEEEEEEEC------
T ss_pred ccccceEEEEEEEEeccCEEEEEEEECCCCCEEEEEEEecCc----chHHHHHHHHHHcCCCCccchhheeeecCccccc
Confidence 345678999999999999999999999999999999986432 223479999999999999999999855431
Q ss_pred -----------------------------CCCceEeEEEEecCCCChhhhhccCCCccccccCCHHHHHHHHHHHHHHHH
Q 040925 603 -----------------------------KGTDFKAFVFEYMENGSLKDWLHQSDDQVEVCKLSLIQRVNIAIDVASAME 653 (833)
Q Consensus 603 -----------------------------~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~gL~ 653 (833)
.+..+.++||||++ |+|.+.+...... ...+++..++.++.|++.||+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~-~~L~~~l~~~~~~--~~~l~~~~~~~i~~qi~~aL~ 155 (383)
T 3eb0_A 79 PPQPPDDHNKLGGKNNGVNNHHKSVIVNPSQNKYLNVIMEYVP-DTLHKVLKSFIRS--GRSIPMNLISIYIYQLFRAVG 155 (383)
T ss_dssp -------------------------------CCEEEEEECCCS-EEHHHHHHHHHHT--TCCCCHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccCCCceEEEEEEecCC-ccHHHHHHHHHhc--CCCCCHHHHHHHHHHHHHHHH
Confidence 23446889999998 5888777642111 116899999999999999999
Q ss_pred HHhhcCCCCceeeCCCCCCeeec-CCCcEEEcccccccccCcccccccccCCCccccccccccccCccccCCC-CCCccc
Q 040925 654 YLHHHCQPPMVHGDLKPSNVLLD-HDMVAHVCDFGLAKFLSDHQLDTAVKTPSSSIGLKGTVGYVAPEYGMGS-EASMTG 731 (833)
Q Consensus 654 ~LH~~~~~~ivH~Dlkp~NIll~-~~~~~kL~DfG~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~ 731 (833)
|||+. ||+||||||+||+++ .++.+||+|||+|+....... .....||+.|+|||++.+. .++.++
T Consensus 156 ~LH~~---gi~H~Dikp~Nil~~~~~~~~kl~Dfg~a~~~~~~~~---------~~~~~~t~~y~aPE~~~~~~~~~~~~ 223 (383)
T 3eb0_A 156 FIHSL---GICHRDIKPQNLLVNSKDNTLKLCDFGSAKKLIPSEP---------SVAYICSRFYRAPELMLGATEYTPSI 223 (383)
T ss_dssp HHHTT---TEECSCCCGGGEEEETTTTEEEECCCTTCEECCTTSC---------CCCCCCCSSCCCHHHHTTCSSCCTHH
T ss_pred HHHHC---cCccCccCHHHEEEcCCCCcEEEEECCCCcccCCCCC---------CcCcccCCCccCHHHhcCCCCCCcch
Confidence 99999 999999999999997 688999999999986543221 1234689999999998775 489999
Q ss_pred ccccCCcCCCccccCCccHHHHHHHhCCCcccccccccchhhhcc----------------------ccchhhhhhhhch
Q 040925 732 DIFTGRRPIDAVFNEGHSLHEFAKTALPEKVMEIVDPSLLMEVMT----------------------NNSMIQEDKRVKT 789 (833)
Q Consensus 732 Di~s~~~~~~~~~~~g~~l~~~~~~~~p~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~ 789 (833)
|||| .|+++++++++..|+......+. ....+. ............+
T Consensus 224 Diws----------lG~il~ell~g~~pf~~~~~~~~--~~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (383)
T 3eb0_A 224 DLWS----------IGCVFGELILGKPLFSGETSIDQ--LVRIIQIMGTPTKEQMIRMNPHYTEVRFPTLKAKDWRKILP 291 (383)
T ss_dssp HHHH----------HHHHHHHHHHSSCSSCCSSHHHH--HHHHHHHHCCCCHHHHHHHCTTC--CCCCCCCCCCHHHHSC
T ss_pred hhhh----------HHHHHHHHHhCCCCCCCCChHHH--HHHHHHHhCCCCHHHHHHhCcccccccCCccCcccHHhhCC
Confidence 9999 78888888888887753221110 000000 0000000011122
Q ss_pred HHHHHHHHHHhhccCCCCCCCCCCHHHHHHH
Q 040925 790 EECLNAIIRTGVLCSMESPFERMDMRDVVAK 820 (833)
Q Consensus 790 ~~~~~~l~~li~~cl~~dP~~RPt~~eil~~ 820 (833)
..++..+.+++.+||+.||++|||+.|+++.
T Consensus 292 ~~~~~~~~~li~~~L~~dP~~R~t~~e~l~h 322 (383)
T 3eb0_A 292 EGTPSLAIDLLEQILRYEPDLRINPYEAMAH 322 (383)
T ss_dssp TTCCHHHHHHHHHHCCSSGGGSCCHHHHHTS
T ss_pred CCCCHHHHHHHHHHccCChhhCCCHHHHhcC
Confidence 2345678999999999999999999999864
No 248
>1vzo_A Ribosomal protein S6 kinase alpha 5; protein kinase, transferase, phosphorylation, serine/threonine protein kinase; 1.8A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=3.5e-37 Score=333.54 Aligned_cols=253 Identities=20% Similarity=0.273 Sum_probs=199.8
Q ss_pred hcCCccCceeccCcceEEEEEEEC---CCceEEEEEEeeccC----CcchhHHHHHHHHHhhc-CCCccceEeeEeecCC
Q 040925 530 TGEFSSSNMIGQGSFGYVYKGTLG---EDEMIVAVKVINLKY----KGASRSFVAECEALRNI-RHRNLIKIITICSSTD 601 (833)
Q Consensus 530 ~~~y~~~~~lg~G~~g~Vy~~~~~---~~~~~vavK~~~~~~----~~~~~~~~~E~~~l~~l-~h~niv~~~~~~~~~~ 601 (833)
.++|++.+.||+|+||.||+|++. .+++.||||+++... ....+.+.+|+++++++ +||||+++++++....
T Consensus 53 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~ 132 (355)
T 1vzo_A 53 IENFELLKVLGTGAYGKVFLVRKISGHDTGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFLVTLHYAFQTET 132 (355)
T ss_dssp GGGEEEEEEEEETTTEEEEEEEECSSTTTTCEEEEEEESEEEEEEEESSGGGCCCHHHHHHHHHTCTTBCCEEEEEEETT
T ss_pred ccceEEEEEeccCCCEEEEEEEEcccCCCCeEEEEEEEeHHHhhhhhhHHHHHHHHHHHHHHccCCCceeEEEEEEeeCc
Confidence 468999999999999999999984 478999999986432 22345678899999999 6999999999976654
Q ss_pred CCCCceEeEEEEecCCCChhhhhccCCCccccccCCHHHHHHHHHHHHHHHHHHhhcCCCCceeeCCCCCCeeecCCCcE
Q 040925 602 FKGTDFKAFVFEYMENGSLKDWLHQSDDQVEVCKLSLIQRVNIAIDVASAMEYLHHHCQPPMVHGDLKPSNVLLDHDMVA 681 (833)
Q Consensus 602 ~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~gL~~LH~~~~~~ivH~Dlkp~NIll~~~~~~ 681 (833)
..++||||+++|+|.+++.... .+++.+++.++.|++.||+|||+. +|+||||||+||+++.++.+
T Consensus 133 -----~~~lv~e~~~~~~L~~~l~~~~------~~~~~~~~~~~~qi~~aL~~LH~~---~ivH~Dlkp~NIll~~~~~~ 198 (355)
T 1vzo_A 133 -----KLHLILDYINGGELFTHLSQRE------RFTEHEVQIYVGEIVLALEHLHKL---GIIYRDIKLENILLDSNGHV 198 (355)
T ss_dssp -----EEEEEECCCCSCBHHHHHHHHS------CCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTSCE
T ss_pred -----eEEEEeecCCCCCHHHHHHHcC------CCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEEECCCCcE
Confidence 8999999999999999998654 689999999999999999999999 99999999999999999999
Q ss_pred EEcccccccccCcccccccccCCCccccccccccccCccccCC--CCCCcccccccCCcCCCccccCCccHHHHHHHhCC
Q 040925 682 HVCDFGLAKFLSDHQLDTAVKTPSSSIGLKGTVGYVAPEYGMG--SEASMTGDIFTGRRPIDAVFNEGHSLHEFAKTALP 759 (833)
Q Consensus 682 kL~DfG~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~--~~~~~~~Di~s~~~~~~~~~~~g~~l~~~~~~~~p 759 (833)
||+|||+++........ ......||+.|+|||++.+ ..++.++|||| +|+++++++++..|
T Consensus 199 kl~DfG~a~~~~~~~~~-------~~~~~~gt~~y~aPE~~~~~~~~~~~~~Dvws----------lG~il~ell~g~~p 261 (355)
T 1vzo_A 199 VLTDFGLSKEFVADETE-------RAYDFCGTIEYMAPDIVRGGDSGHDKAVDWWS----------LGVLMYELLTGASP 261 (355)
T ss_dssp EESCSSEEEECCGGGGG-------GGCGGGSCCTTCCHHHHTTCC---CTHHHHHH----------HHHHHHHHHHSSCT
T ss_pred EEeeCCCCeecccCCCC-------cccCcccCcCccChhhhcCCCCCCCchhhHHH----------HHHHHHHHHHCCCC
Confidence 99999999865432211 1223569999999999885 34789999999 88899999999988
Q ss_pred Ccccccccc--cchhhhccccchhhhhhhhchHHHHHHHHHHhhccCCCCCCCCC-----CHHHHHHH
Q 040925 760 EKVMEIVDP--SLLMEVMTNNSMIQEDKRVKTEECLNAIIRTGVLCSMESPFERM-----DMRDVVAK 820 (833)
Q Consensus 760 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RP-----t~~eil~~ 820 (833)
+........ .+....... ....+.+++..+.+++.+||..||++|| |++|+++.
T Consensus 262 f~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~li~~~L~~dP~~R~~~~~~s~~ell~h 322 (355)
T 1vzo_A 262 FTVDGEKNSQAEISRRILKS-------EPPYPQEMSALAKDLIQRLLMKDPKKRLGCGPRDADEIKEH 322 (355)
T ss_dssp TSCTTSCCCHHHHHHHHHHC-------CCCCCTTSCHHHHHHHHHHTCSSGGGSTTSSTTTHHHHHTS
T ss_pred CccCCccchHHHHHHHHhcc-------CCCCCcccCHHHHHHHHHHhhhCHHHhcCCCCCCHHHHHcC
Confidence 753221111 010010000 1112233456788999999999999999 99999875
No 249
>2b9h_A MAP kinase FUS3, mitogen-activated protein kinase FUS3; transferase; HET: ADP; 1.55A {Saccharomyces cerevisiae} PDB: 2b9i_A* 2b9j_A* 2f49_A 2fa2_A 2b9f_A* 2f9g_A*
Probab=100.00 E-value=9.3e-37 Score=330.99 Aligned_cols=270 Identities=22% Similarity=0.263 Sum_probs=202.3
Q ss_pred hcCCccCceeccCcceEEEEEEECCCceEEEEEEeeccCC-cchhHHHHHHHHHhhcCCCccceEeeEeecCCCCCCceE
Q 040925 530 TGEFSSSNMIGQGSFGYVYKGTLGEDEMIVAVKVINLKYK-GASRSFVAECEALRNIRHRNLIKIITICSSTDFKGTDFK 608 (833)
Q Consensus 530 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~-~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~ 608 (833)
.++|++.+.||+|+||.||+|++..+++.||||+++.... .....+.+|++++++++||||+++++++....+......
T Consensus 10 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~ 89 (353)
T 2b9h_A 10 SSDFQLKSLLGEGAYGVVCSATHKPTGEIVAIKKIEPFDKPLFALRTLREIKILKHFKHENIITIFNIQRPDSFENFNEV 89 (353)
T ss_dssp CTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCCSSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCSTTCCCE
T ss_pred ccceEEeeEEcCCCCeEEEEEEECCCCcEEEEEeecccccchHHHHHHHHHHHHHhCcCCCcCCeeeeecccccCccceE
Confidence 4689999999999999999999998999999999964322 234578899999999999999999999877655566789
Q ss_pred eEEEEecCCCChhhhhccCCCccccccCCHHHHHHHHHHHHHHHHHHhhcCCCCceeeCCCCCCeeecCCCcEEEccccc
Q 040925 609 AFVFEYMENGSLKDWLHQSDDQVEVCKLSLIQRVNIAIDVASAMEYLHHHCQPPMVHGDLKPSNVLLDHDMVAHVCDFGL 688 (833)
Q Consensus 609 ~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~gL~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kL~DfG~ 688 (833)
++||||++ |+|.+++... .+++..++.++.|++.||+|||+. ||+||||||+||+++.++.+||+|||+
T Consensus 90 ~lv~e~~~-~~L~~~~~~~-------~~~~~~~~~~~~qi~~~L~~LH~~---~ivH~Dlkp~Nil~~~~~~~kl~Dfg~ 158 (353)
T 2b9h_A 90 YIIQELMQ-TDLHRVISTQ-------MLSDDHIQYFIYQTLRAVKVLHGS---NVIHRDLKPSNLLINSNCDLKVCDFGL 158 (353)
T ss_dssp EEEECCCS-EEHHHHHHHC-------CCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEECTTCCEEECCCTT
T ss_pred EEEEeccC-ccHHHHHhhc-------CCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHeEEcCCCcEEEEeccc
Confidence 99999997 5999998753 589999999999999999999999 999999999999999999999999999
Q ss_pred ccccCcccccccc--cCCCccccccccccccCccccCC-CCCCcccccccCCcCCCccccCCccHHHHHHHhCCCccccc
Q 040925 689 AKFLSDHQLDTAV--KTPSSSIGLKGTVGYVAPEYGMG-SEASMTGDIFTGRRPIDAVFNEGHSLHEFAKTALPEKVMEI 765 (833)
Q Consensus 689 a~~~~~~~~~~~~--~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Di~s~~~~~~~~~~~g~~l~~~~~~~~p~~~~~~ 765 (833)
++........... ..........||+.|+|||++.+ ..++.++|||| .|+++++++++..|+.....
T Consensus 159 a~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~Di~s----------lG~il~~l~~g~~pf~~~~~ 228 (353)
T 2b9h_A 159 ARIIDESAADNSEPTGQQSGMVEFVATRWYRAPEVMLTSAKYSRAMDVWS----------CGCILAELFLRRPIFPGRDY 228 (353)
T ss_dssp CEECC----------------CCCCCCGGGCCHHHHHSCCCCCHHHHHHH----------HHHHHHHHHHSSCSCCCSSH
T ss_pred ccccccccccccCccccccchhhccccccccCCeeeccCCCccchhhHHH----------HHHHHHHHHhCCCCCCCCCc
Confidence 9876543221110 01111234579999999998654 67899999999 78888888888887652221
Q ss_pred ccccc----------------------hhhhccccc-hhhhhhhhchHHHHHHHHHHhhccCCCCCCCCCCHHHHHHH
Q 040925 766 VDPSL----------------------LMEVMTNNS-MIQEDKRVKTEECLNAIIRTGVLCSMESPFERMDMRDVVAK 820 (833)
Q Consensus 766 ~~~~~----------------------~~~~~~~~~-~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~ 820 (833)
.+... ..+...... ............+++.+.+++.+||+.||++|||++|+++.
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~h 306 (353)
T 2b9h_A 229 RHQLLLIFGIIGTPHSDNDLRCIESPRAREYIKSLPMYPAAPLEKMFPRVNPKGIDLLQRMLVFDPAKRITAKEALEH 306 (353)
T ss_dssp HHHHHHHHHHHCCCCSTTTTTTCCCHHHHHHHHTSCCCCCCCHHHHSTTSCHHHHHHHHHHSCSSGGGSCCHHHHHTS
T ss_pred HHHHHHHHHHhCCCchhccccccccchhhHHhhcccCCCCcchhhhcccCCHHHHHHHHHhcCcCcccCCCHHHHhcC
Confidence 00000 000000000 00000011112356778899999999999999999999874
No 250
>3pg1_A Mitogen-activated protein kinase, putative (MAP K protein); EPK Ser/Thr protein kinase fold, Ser/Thr protein kinase, TRA; 1.95A {Leishmania major} PDB: 3uib_A*
Probab=100.00 E-value=2.2e-36 Score=329.04 Aligned_cols=270 Identities=18% Similarity=0.199 Sum_probs=200.0
Q ss_pred chHHHHHHhcCCccCceeccCcceEEEEEEECCCceEEEEEEeeccCCc-----------chhHHHHHHHHHhhcCCCcc
Q 040925 522 SYAELSKATGEFSSSNMIGQGSFGYVYKGTLGEDEMIVAVKVINLKYKG-----------ASRSFVAECEALRNIRHRNL 590 (833)
Q Consensus 522 ~~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~-----------~~~~~~~E~~~l~~l~h~ni 590 (833)
...++....++|++.+.||+|+||.||+|.+. +++.||||++...... ..+.+.+|++++++++||||
T Consensus 13 ~~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i 91 (362)
T 3pg1_A 13 LIAELHAMQSPYTVQRFISSGSYGAVCAGVDS-EGIPVAIKRVFNTVSDGRTVNILSDSFLCKRVLREIRLLNHFHHPNI 91 (362)
T ss_dssp HHHHHHHTTCSCEEEEEEEEETTEEEEEEECT-TSCEEEEEEECEECCTTSCEEGGGSHHHHHHHHHHHHHHHHCCCTTB
T ss_pred HHHHHHHhccceEEeEEeccCCCEEEEEEECC-CCCeEEEEeccccCCccchhhhhhhhhHHHHHHHHHHHHHhCCCcCc
Confidence 45678888899999999999999999999987 5899999998643221 12678999999999999999
Q ss_pred ceEeeEeecCCCCCCceEeEEEEecCCCChhhhhccCCCccccccCCHHHHHHHHHHHHHHHHHHhhcCCCCceeeCCCC
Q 040925 591 IKIITICSSTDFKGTDFKAFVFEYMENGSLKDWLHQSDDQVEVCKLSLIQRVNIAIDVASAMEYLHHHCQPPMVHGDLKP 670 (833)
Q Consensus 591 v~~~~~~~~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~gL~~LH~~~~~~ivH~Dlkp 670 (833)
+++++++...+.......++||||++ |+|.+++..... .+++..++.++.|++.||.|||+. +|+||||||
T Consensus 92 v~~~~~~~~~~~~~~~~~~lv~e~~~-~~l~~~~~~~~~-----~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~Dlkp 162 (362)
T 3pg1_A 92 LGLRDIFVHFEEPAMHKLYLVTELMR-TDLAQVIHDQRI-----VISPQHIQYFMYHILLGLHVLHEA---GVVHRDLHP 162 (362)
T ss_dssp CCCSEEEEECCTTTCCEEEEEEECCS-EEHHHHHHCTTS-----CCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCG
T ss_pred cceeeeEEeccCCCcceEEEEEccCC-CCHHHHHHhccc-----CCCHHHHHHHHHHHHHHHHHHHHC---cCEecCCCh
Confidence 99999986654344557899999998 589888876532 689999999999999999999999 999999999
Q ss_pred CCeeecCCCcEEEcccccccccCcccccccccCCCccccccccccccCccccCC-CCCCcccccccCCcCCCccccCCcc
Q 040925 671 SNVLLDHDMVAHVCDFGLAKFLSDHQLDTAVKTPSSSIGLKGTVGYVAPEYGMG-SEASMTGDIFTGRRPIDAVFNEGHS 749 (833)
Q Consensus 671 ~NIll~~~~~~kL~DfG~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Di~s~~~~~~~~~~~g~~ 749 (833)
+||+++.++.+||+|||+++....... .....||+.|+|||++.+ ..++.++|||| .|++
T Consensus 163 ~NIl~~~~~~~kl~Dfg~~~~~~~~~~---------~~~~~~t~~y~aPE~~~~~~~~~~~~Diws----------lG~i 223 (362)
T 3pg1_A 163 GNILLADNNDITICDFNLAREDTADAN---------KTHYVTHRWYRAPELVMQFKGFTKLVDMWS----------AGCV 223 (362)
T ss_dssp GGEEECTTCCEEECCTTC------------------------CGGGCCHHHHTTCTTCCTHHHHHH----------HHHH
T ss_pred HHEEEcCCCCEEEEecCcccccccccc---------cceecccceecCcHHhcCCCCCCcHhHHHh----------HHHH
Confidence 999999999999999999975433221 123468999999998876 67899999999 7888
Q ss_pred HHHHHHHhCCCcccccccccc-h--------------------hhhccccch--hhhhhhhchHHHHHHHHHHhhccCCC
Q 040925 750 LHEFAKTALPEKVMEIVDPSL-L--------------------MEVMTNNSM--IQEDKRVKTEECLNAIIRTGVLCSME 806 (833)
Q Consensus 750 l~~~~~~~~p~~~~~~~~~~~-~--------------------~~~~~~~~~--~~~~~~~~~~~~~~~l~~li~~cl~~ 806 (833)
+++++++..|+......+... . .+....... ............++.+.+++.+||+.
T Consensus 224 l~~l~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~ 303 (362)
T 3pg1_A 224 MAEMFNRKALFRGSTFYNQLNKIVEVVGTPKIEDVVMFSSPSARDYLRNSLSNVPARAWTAVVPTADPVALDLIAKMLEF 303 (362)
T ss_dssp HHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCHHHHHHTSCHHHHHHTTTCCCCCCCCCHHHHSTTSCHHHHHHHHHHTCS
T ss_pred HHHHHhCCCCCCCCCHHHHHHHHHHHcCCCChHHhhhccchhhhHHHHhhcccCChhhHHhhCCCCCHHHHHHHHHHhcC
Confidence 888888888765221100000 0 000000000 00000111123356788999999999
Q ss_pred CCCCCCCHHHHHHH
Q 040925 807 SPFERMDMRDVVAK 820 (833)
Q Consensus 807 dP~~RPt~~eil~~ 820 (833)
||++|||++|+++.
T Consensus 304 dP~~Rpt~~ell~h 317 (362)
T 3pg1_A 304 NPQRRISTEQALRH 317 (362)
T ss_dssp SGGGSCCHHHHHTS
T ss_pred ChhhCCCHHHHHcC
Confidence 99999999999875
No 251
>2wtk_C Serine/threonine-protein kinase 11; transferase-metal-binding protein complex, transferase metal protein complex, nucleus; HET: ANP; 2.65A {Homo sapiens}
Probab=100.00 E-value=1.9e-36 Score=321.37 Aligned_cols=256 Identities=21% Similarity=0.353 Sum_probs=199.4
Q ss_pred HhcCCccCceeccCcceEEEEEEECCCceEEEEEEeeccC----CcchhHHHHHHHHHhhcCCCccceEeeEeecCCCCC
Q 040925 529 ATGEFSSSNMIGQGSFGYVYKGTLGEDEMIVAVKVINLKY----KGASRSFVAECEALRNIRHRNLIKIITICSSTDFKG 604 (833)
Q Consensus 529 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~----~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~ 604 (833)
..++|++.+.||+|+||.||+|.+..+++.||+|+++... ....+.+.+|++++++++||||+++++++... .
T Consensus 3 l~~~y~i~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~---~ 79 (305)
T 2wtk_C 3 LIGKYLMGDLLGEGSYGKVKEVLDSETLCRRAVKILKKKKLRRIPNGEANVKKEIQLLRRLRHKNVIQLVDVLYNE---E 79 (305)
T ss_dssp --CCBCCCCEEEECSSCEEEEEEBTTTCCEEEEEEECHHHHHHSTTHHHHHHHHHHHHTTCCCTTBCCEEEEEECC----
T ss_pred cccceeEeeEEecCCCeEEEEEEECCCCcEEEEEEeccccccccchhHHHHHHHHHHHHhcCCCCeeEEEEEEEcC---C
Confidence 3578999999999999999999999999999999996432 23456799999999999999999999997532 2
Q ss_pred CceEeEEEEecCCCChhhhhccCCCccccccCCHHHHHHHHHHHHHHHHHHhhcCCCCceeeCCCCCCeeecCCCcEEEc
Q 040925 605 TDFKAFVFEYMENGSLKDWLHQSDDQVEVCKLSLIQRVNIAIDVASAMEYLHHHCQPPMVHGDLKPSNVLLDHDMVAHVC 684 (833)
Q Consensus 605 ~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~gL~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kL~ 684 (833)
....++||||++++ +.+++...... .+++..++.++.|++.||+|||+. +|+||||||+||+++.++.+||+
T Consensus 80 ~~~~~lv~e~~~~~-l~~~~~~~~~~----~~~~~~~~~~~~qi~~al~~LH~~---~i~H~dlkp~NIl~~~~~~~kl~ 151 (305)
T 2wtk_C 80 KQKMYMVMEYCVCG-MQEMLDSVPEK----RFPVCQAHGYFCQLIDGLEYLHSQ---GIVHKDIKPGNLLLTTGGTLKIS 151 (305)
T ss_dssp --CEEEEEECCSEE-HHHHHHHSTTC----SCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTCCEEEC
T ss_pred CCeEEEEehhccCC-HHHHHHhCccc----ccCHHHHHHHHHHHHHHHHHHHHC---CeeecCCCcccEEEcCCCcEEee
Confidence 34789999999875 87877764432 689999999999999999999999 99999999999999999999999
Q ss_pred ccccccccCcccccccccCCCccccccccccccCccccCCCC--CCcccccccCCcCCCccccCCccHHHHHHHhCCCcc
Q 040925 685 DFGLAKFLSDHQLDTAVKTPSSSIGLKGTVGYVAPEYGMGSE--ASMTGDIFTGRRPIDAVFNEGHSLHEFAKTALPEKV 762 (833)
Q Consensus 685 DfG~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~--~~~~~Di~s~~~~~~~~~~~g~~l~~~~~~~~p~~~ 762 (833)
|||++......... .......||+.|+|||++.+.. ++.++|||| .|+++++++++..|+..
T Consensus 152 dfg~~~~~~~~~~~------~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Di~s----------lG~il~~l~~g~~p~~~ 215 (305)
T 2wtk_C 152 ALGVAEALHPFAAD------DTCRTSQGSPAFQPPEIANGLDTFSGFKVDIWS----------AGVTLYNITTGLYPFEG 215 (305)
T ss_dssp CCTTCEECCTTCSS------CEECCCCSCGGGCCHHHHTCCSCEESHHHHHHH----------HHHHHHHHHHSSCSCCC
T ss_pred ccccccccCccccc------cccccCCCCCCCcChhhccCcccCCcchhhHHH----------HHHHHHHHHhCCCCCCC
Confidence 99999866432211 1112346999999999987644 478999999 88899999999988753
Q ss_pred cccccccchhhhccccchhhhhhhhchHHHHHHHHHHhhccCCCCCCCCCCHHHHHHH
Q 040925 763 MEIVDPSLLMEVMTNNSMIQEDKRVKTEECLNAIIRTGVLCSMESPFERMDMRDVVAK 820 (833)
Q Consensus 763 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~ 820 (833)
.... .......... ...+..++..+.+++.+||..||++|||++|+++.
T Consensus 216 ~~~~--~~~~~i~~~~-------~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~ 264 (305)
T 2wtk_C 216 DNIY--KLFENIGKGS-------YAIPGDCGPPLSDLLKGMLEYEPAKRFSIRQIRQH 264 (305)
T ss_dssp SSHH--HHHHHHHHCC-------CCCCSSSCHHHHHHHHHHTCSSTTTSCCHHHHHHS
T ss_pred chHH--HHHHHHhcCC-------CCCCCccCHHHHHHHHHHccCChhhCCCHHHHhcC
Confidence 2211 1111110110 01122345678899999999999999999999875
No 252
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=8.5e-35 Score=314.66 Aligned_cols=308 Identities=24% Similarity=0.378 Sum_probs=231.0
Q ss_pred cccCCCCCCEEEccCCcccccCCccCCCCCCCCEEEcCCCcccccCCccccCCCCCcEEECCCcccccccCchhhcCCCC
Q 040925 18 FVGNLSDLEVIRIMGNSLGGKIPTTLGLLRNLVSLNVAENKFSGMFPRSICNISSLELIQLALNRFSGNLPFDIVVNLPN 97 (833)
Q Consensus 18 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~ 97 (833)
.+..+++|++|++++|.+.. +|. +..+++|++|+|++|+++++.+ |.++++|++|+|++|.++ .+| .|.++++
T Consensus 39 ~~~~l~~L~~L~l~~~~i~~-~~~-~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~-~~~--~~~~l~~ 111 (347)
T 4fmz_A 39 TQEELESITKLVVAGEKVAS-IQG-IEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKIT-DIS--ALQNLTN 111 (347)
T ss_dssp CHHHHTTCSEEECCSSCCCC-CTT-GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-CCG--GGTTCTT
T ss_pred cchhcccccEEEEeCCcccc-chh-hhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCccc-Cch--HHcCCCc
Confidence 45678899999999999954 443 8889999999999999985444 999999999999999998 555 4789999
Q ss_pred ccEEEccCCcceeeCCccccCCCCCcEEEcccCccccccCcCccCCCcCceEecccccCCCCCCCCcccccccCCCCCCC
Q 040925 98 LKALAIGGNNFFGSIPYSLSNASNLELLDLSVNQFKGNVSIDFSSLKNLLWLNLEQNNLGTGTATDLDFVTFLTNCSSLK 177 (833)
Q Consensus 98 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~l~~L~ 177 (833)
|++|+|++|.+++..+ +..+++|++|++++|...... ..+..+++|++|++++|.+..++. +..+++|+
T Consensus 112 L~~L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~--------~~~l~~L~ 180 (347)
T 4fmz_A 112 LRELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDL-SPLSNMTGLNYLTVTESKVKDVTP--------IANLTDLY 180 (347)
T ss_dssp CSEEECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCC-GGGTTCTTCCEEECCSSCCCCCGG--------GGGCTTCS
T ss_pred CCEEECcCCcccCchh--hccCCceeEEECCCCCCcccc-cchhhCCCCcEEEecCCCcCCchh--------hccCCCCC
Confidence 9999999999985433 889999999999999655333 348899999999999999876442 67889999
Q ss_pred EEEccCCcCcccCChhHhhhcccccEEEccCccccccCChhhhcCCCCCeEeccCCcccccCCccccCCCCCCEEEcccc
Q 040925 178 ALSLADNQFGGELPHSIANLSSTVINFGIGRNQISGTIPPGIRNLVNLIGFGAEENQLHGTIPDAIGELKNLQKLCLFRN 257 (833)
Q Consensus 178 ~L~Ls~N~l~~~~p~~~~~l~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 257 (833)
+|++++|++++ ++ . +..+++|+.|++++|++.+..+ +..+++|++|++++|
T Consensus 181 ~L~l~~n~l~~-~~-------------------------~-~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n 231 (347)
T 4fmz_A 181 SLSLNYNQIED-IS-------------------------P-LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNN 231 (347)
T ss_dssp EEECTTSCCCC-CG-------------------------G-GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSS
T ss_pred EEEccCCcccc-cc-------------------------c-ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCC
Confidence 99999998872 11 1 4556666667777766664433 666667777777777
Q ss_pred cCcccCCccccCCCCCCeEEeecccccCCCCCCCCCCCccceeecCCceecccCCcccccccccceeeecCCCccCCCCC
Q 040925 258 FLQGRIPSGLGNLTKLANLELSSNSLQGNIPSSLGNCQNLMSFTASQNKLTGALPHQLLSITTLSLYLDLSNNLLNGSLP 337 (833)
Q Consensus 258 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~ll~~L~ls~N~l~~~~~ 337 (833)
.+++..+ +..+++|++|++++|++++. ..+..+++|+.|++++|++++ +| .+..+..+ +.|++++|.+++..+
T Consensus 232 ~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~-~~-~~~~l~~L-~~L~L~~n~l~~~~~ 304 (347)
T 4fmz_A 232 KITDLSP--LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISD-IS-VLNNLSQL-NSLFLNNNQLGNEDM 304 (347)
T ss_dssp CCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCC-CG-GGGGCTTC-SEEECCSSCCCGGGH
T ss_pred ccCCCcc--hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCC-Ch-hhcCCCCC-CEEECcCCcCCCcCh
Confidence 7764332 66667777777777776643 346666777777777777763 32 34455555 677777777777777
Q ss_pred cccccCCCcCEEeccCCcCCCCCCccccCCCCCcEEeecCCccc
Q 040925 338 LQVGHLKNLVILDISSNQFSGVIPGTLSTCVCLEYLDISSNSFH 381 (833)
Q Consensus 338 ~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 381 (833)
..|..+++|++|++++|++++..| +..+++|++|++++|.|+
T Consensus 305 ~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 305 EVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp HHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred hHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 778888999999999999987666 888899999999999876
No 253
>2fst_X Mitogen-activated protein kinase 14; active mutants, lipids, MAP kinase insertion, autophosphorylation, transferase; HET: BOG; 1.45A {Homo sapiens} PDB: 2fso_X* 2fsl_X* 2fsm_X* 2npq_A* 2bal_A* 2baj_A* 2bak_A* 2baq_A* 2qd9_A* 1ian_A* 2rg5_A* 2rg6_A* 3bv2_A* 3bv3_A* 3bx5_A* 3c5u_A* 3cg2_A* 3l8x_A* 3mvl_A* 3mvm_A* ...
Probab=100.00 E-value=5.4e-37 Score=332.78 Aligned_cols=259 Identities=19% Similarity=0.260 Sum_probs=182.7
Q ss_pred hcCCccCceeccCcceEEEEEEECCCceEEEEEEeeccCC--cchhHHHHHHHHHhhcCCCccceEeeEeecCC-CCCCc
Q 040925 530 TGEFSSSNMIGQGSFGYVYKGTLGEDEMIVAVKVINLKYK--GASRSFVAECEALRNIRHRNLIKIITICSSTD-FKGTD 606 (833)
Q Consensus 530 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~--~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~-~~~~~ 606 (833)
.++|++.+.||+|+||.||+|.+..+++.||||++..... ...+.+.+|++++++++||||+++++++.... .....
T Consensus 28 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~~~~ 107 (367)
T 2fst_X 28 PERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENVIGLLDVFTPARSLEEFN 107 (367)
T ss_dssp ETTEEEEEECC----CCEEEEEETTTTEEEEEEECSSTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSGGGCC
T ss_pred CCceEEeeEEeecCCeEEEEEEECCCCCEEEEEEeCccccCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEecCCccccCC
Confidence 3689999999999999999999999999999999964422 23467889999999999999999999986542 22234
Q ss_pred eEeEEEEecCCCChhhhhccCCCccccccCCHHHHHHHHHHHHHHHHHHhhcCCCCceeeCCCCCCeeecCCCcEEEccc
Q 040925 607 FKAFVFEYMENGSLKDWLHQSDDQVEVCKLSLIQRVNIAIDVASAMEYLHHHCQPPMVHGDLKPSNVLLDHDMVAHVCDF 686 (833)
Q Consensus 607 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~gL~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kL~Df 686 (833)
..++||||+ +++|.+++... .+++..++.++.|++.||+|||+. ||+||||||+||+++.++.+||+||
T Consensus 108 ~~~lv~e~~-~~~L~~~~~~~-------~l~~~~~~~i~~qi~~aL~~LH~~---givH~Dlkp~NIll~~~~~~kL~DF 176 (367)
T 2fst_X 108 DVYLVTHLM-GADLNNIVKCQ-------KLTDDHVQFLIYQILRGLKYIHSA---DIIHRDLKPSNLAVNEDCELKILDF 176 (367)
T ss_dssp CCEEEEECC-CEECC-----C-------CCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTCCEEECC-
T ss_pred eEEEEeccc-CCCHHHHHhcC-------CCCHHHHHHHHHHHHHHHHHHHHC---CeeeCCCCHhhEEECCCCCEEEeec
Confidence 679999999 67999998753 689999999999999999999999 9999999999999999999999999
Q ss_pred ccccccCcccccccccCCCccccccccccccCccccCC-CCCCcccccccCCcCCCccccCCccHHHHHHHhCCCccccc
Q 040925 687 GLAKFLSDHQLDTAVKTPSSSIGLKGTVGYVAPEYGMG-SEASMTGDIFTGRRPIDAVFNEGHSLHEFAKTALPEKVMEI 765 (833)
Q Consensus 687 G~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Di~s~~~~~~~~~~~g~~l~~~~~~~~p~~~~~~ 765 (833)
|+++..... .....||+.|+|||++.+ ..++.++|||| .|+++++++++..|+...+.
T Consensus 177 G~a~~~~~~-----------~~~~~~t~~y~aPE~~~~~~~~~~~~Diws----------lG~il~ell~g~~pf~~~~~ 235 (367)
T 2fst_X 177 GLARHTADE-----------MTGYVATRWYRAPEIMLNWMHYNQTVDIWS----------VGCIMAELLTGRTLFPGTDH 235 (367)
T ss_dssp -------------------------CCCTTCCHHHHTTCCSCCTTHHHHH----------HHHHHHHHHHSSCSCCCSSH
T ss_pred ccccccccc-----------CCCcCcCcCccChHHHcCCcCCCchhhHHH----------HHHHHHHHHhCCCCCCCCCH
Confidence 999865432 123469999999999877 67899999999 78888888888887652221
Q ss_pred cccc-------------ch--------hhhccccchh-hhhhhhchHHHHHHHHHHhhccCCCCCCCCCCHHHHHHH
Q 040925 766 VDPS-------------LL--------MEVMTNNSMI-QEDKRVKTEECLNAIIRTGVLCSMESPFERMDMRDVVAK 820 (833)
Q Consensus 766 ~~~~-------------~~--------~~~~~~~~~~-~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~ 820 (833)
.+.- .. .......... ...........++.+.+++.+||..||++|||++|+++.
T Consensus 236 ~~~l~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~R~t~~e~L~h 312 (367)
T 2fst_X 236 IDQLKLILRLVGTPGAELLKKISSESARNYIQSLTQMPKMNFANVFIGANPLAVDLLEKMLVLDSDKRITAAQALAH 312 (367)
T ss_dssp HHHHHHHHHHHCSCCHHHHTTCCCHHHHHHHHTSCCCCCCCHHHHTTTCCHHHHHHHHHHSCSSGGGSCCHHHHHTS
T ss_pred HHHHHHHHHHhCCCCHHHHHHhhhHHHHHHHhccCCCCCCCHHHHCCCCCHHHHHHHHHhCCCCcccCcCHHHHhcC
Confidence 1100 00 0000000000 000000011235678899999999999999999999874
No 254
>1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A* 1u54_A* 3eqr_A* 3eqp_B*
Probab=100.00 E-value=3.4e-37 Score=324.83 Aligned_cols=265 Identities=25% Similarity=0.325 Sum_probs=195.1
Q ss_pred hcCCccCceeccCcceEEEEEEECC-C--ceEEEEEEeeccC---CcchhHHHHHHHHHhhcCCCccceEeeEeecCCCC
Q 040925 530 TGEFSSSNMIGQGSFGYVYKGTLGE-D--EMIVAVKVINLKY---KGASRSFVAECEALRNIRHRNLIKIITICSSTDFK 603 (833)
Q Consensus 530 ~~~y~~~~~lg~G~~g~Vy~~~~~~-~--~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~ 603 (833)
.++|++.+.||+|+||.||+|++.. + +..||||+++... ....+.+.+|++++++++||||+++++++...
T Consensus 17 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~--- 93 (291)
T 1u46_A 17 EKDLRLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLDHRNLIRLYGVVLTP--- 93 (291)
T ss_dssp GGGEEEEEECC----CCCEEEEEECTTSCEEEEEEEC--------CHHHHHHHHHHHHHHHCCCTTBCCEEEEECSS---
T ss_pred hhHeeeeeeecCCCceeEEEEEeccCCCceeEEEEEEEccCccCCHHHHHHHHHHHHHHHhCCCCCcccEEEEEccC---
Confidence 3579999999999999999998642 2 3469999987542 23456789999999999999999999997543
Q ss_pred CCceEeEEEEecCCCChhhhhccCCCccccccCCHHHHHHHHHHHHHHHHHHhhcCCCCceeeCCCCCCeeecCCCcEEE
Q 040925 604 GTDFKAFVFEYMENGSLKDWLHQSDDQVEVCKLSLIQRVNIAIDVASAMEYLHHHCQPPMVHGDLKPSNVLLDHDMVAHV 683 (833)
Q Consensus 604 ~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~gL~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kL 683 (833)
..++||||+++|+|.+++..... .+++..++.++.|++.||.|||+. +|+||||||+||+++.++.+||
T Consensus 94 ---~~~~v~e~~~~~~L~~~l~~~~~-----~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dikp~Nili~~~~~~kl 162 (291)
T 1u46_A 94 ---PMKMVTELAPLGSLLDRLRKHQG-----HFLLGTLSRYAVQVAEGMGYLESK---RFIHRDLAARNLLLATRDLVKI 162 (291)
T ss_dssp ---SCEEEEECCTTCBHHHHHHHHGG-----GSCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEEEETTEEEE
T ss_pred ---CceeeEecccCCCHHHHHHhccC-----CcCHHHHHHHHHHHHHHHHHHHhC---CcccCCCchheEEEcCCCCEEE
Confidence 37899999999999999976431 689999999999999999999999 9999999999999999999999
Q ss_pred cccccccccCcccccccccCCCccccccccccccCccccCCCCCCcccccccCCcCCCccccCCccHHHHHH-HhCCCcc
Q 040925 684 CDFGLAKFLSDHQLDTAVKTPSSSIGLKGTVGYVAPEYGMGSEASMTGDIFTGRRPIDAVFNEGHSLHEFAK-TALPEKV 762 (833)
Q Consensus 684 ~DfG~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~s~~~~~~~~~~~g~~l~~~~~-~~~p~~~ 762 (833)
+|||++........... ......+|+.|+|||++.+..++.++|||| +|++++++++ +..|+..
T Consensus 163 ~Dfg~~~~~~~~~~~~~-----~~~~~~~~~~y~aPE~~~~~~~~~~~Di~s----------lG~il~~l~~~g~~p~~~ 227 (291)
T 1u46_A 163 GDFGLMRALPQNDDHYV-----MQEHRKVPFAWCAPESLKTRTFSHASDTWM----------FGVTLWEMFTYGQEPWIG 227 (291)
T ss_dssp CCCTTCEECCC-CCEEE-----C-----CCGGGCCHHHHHHCEEEHHHHHHH----------HHHHHHHHHTTSCCTTTT
T ss_pred ccccccccccccccchh-----hhccCCCCceeeCchhhcCCCCCchhhHHH----------HHHHHHHHHhCCCCCccc
Confidence 99999987654321111 112245788999999998888999999999 7888888888 7777652
Q ss_pred cccccccchhhhccccchhhhhhhhchHHHHHHHHHHhhccCCCCCCCCCCHHHHHHHHHHhhhhhhc
Q 040925 763 MEIVDPSLLMEVMTNNSMIQEDKRVKTEECLNAIIRTGVLCSMESPFERMDMRDVVAKLCHTRETFLG 830 (833)
Q Consensus 763 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~i~~~~~~ 830 (833)
... ............ .......++..+.+++.+||..||++|||+.++++.|+++......
T Consensus 228 ~~~--~~~~~~~~~~~~-----~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~l~~~~~~~~~ 288 (291)
T 1u46_A 228 LNG--SQILHKIDKEGE-----RLPRPEDCPQDIYNVMVQCWAHKPEDRPTFVALRDFLLEAQPTDMR 288 (291)
T ss_dssp CCH--HHHHHHHHTSCC-----CCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHC-----
T ss_pred CCH--HHHHHHHHccCC-----CCCCCcCcCHHHHHHHHHHccCCcccCcCHHHHHHHHHHhCccchh
Confidence 211 111111111100 0111233567789999999999999999999999999998765443
No 255
>2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension, transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A*
Probab=100.00 E-value=2.5e-37 Score=327.82 Aligned_cols=270 Identities=22% Similarity=0.284 Sum_probs=183.7
Q ss_pred HHhcCCccCceeccCcceEEEEEEECCCceEEEEEEeeccC-CcchhHHHHHHHHHhhcCCCccceEeeEeecCCCCCCc
Q 040925 528 KATGEFSSSNMIGQGSFGYVYKGTLGEDEMIVAVKVINLKY-KGASRSFVAECEALRNIRHRNLIKIITICSSTDFKGTD 606 (833)
Q Consensus 528 ~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~ 606 (833)
...++|++.+.||+|+||.||+|++..+++.||||++.... ....+.+.+|++++++++||||+++++++...+
T Consensus 12 i~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~----- 86 (303)
T 2vwi_A 12 INRDDYELQEVIGSGATAVVQAAYCAPKKEKVAIKRINLEKCQTSMDELLKEIQAMSQCHHPNIVSYYTSFVVKD----- 86 (303)
T ss_dssp -CCCCCEEEEECC---CCCEEEEEC----CEEEEECCC----------------CCCCCCCTTBCCEEEEEESSS-----
T ss_pred cchhhhhhhheeccccceEEEEEEECCCCcEEEEEEEEhhhcchhHHHHHHHHHHHhhcCCCCEeeEEEEEeecC-----
Confidence 44578999999999999999999998889999999986442 234567889999999999999999999986655
Q ss_pred eEeEEEEecCCCChhhhhccCCCc--cccccCCHHHHHHHHHHHHHHHHHHhhcCCCCceeeCCCCCCeeecCCCcEEEc
Q 040925 607 FKAFVFEYMENGSLKDWLHQSDDQ--VEVCKLSLIQRVNIAIDVASAMEYLHHHCQPPMVHGDLKPSNVLLDHDMVAHVC 684 (833)
Q Consensus 607 ~~~lv~e~~~~gsL~~~l~~~~~~--~~~~~l~~~~~~~i~~qi~~gL~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kL~ 684 (833)
..++||||+++|+|.+++...... .....+++..++.++.|++.||+|||+. +|+||||||+||+++.++.+||+
T Consensus 87 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~kl~ 163 (303)
T 2vwi_A 87 ELWLVMKLLSGGSVLDIIKHIVAKGEHKSGVLDESTIATILREVLEGLEYLHKN---GQIHRDVKAGNILLGEDGSVQIA 163 (303)
T ss_dssp CEEEEEECCTTCBHHHHHHHHHHTTTTTTCSSCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCSGGGEEECTTCCEEEC
T ss_pred CcEEEehhccCCchHHHHHHHhhccccccCCCCHHHHHHHHHHHHHHHHHHHhC---CCCCCCCChhhEEEcCCCCEEEE
Confidence 789999999999999998742100 0012589999999999999999999999 99999999999999999999999
Q ss_pred ccccccccCcccccccccCCCccccccccccccCccccCC-CCCCcccccccCCcCCCccccCCccHHHHHHHhCCCccc
Q 040925 685 DFGLAKFLSDHQLDTAVKTPSSSIGLKGTVGYVAPEYGMG-SEASMTGDIFTGRRPIDAVFNEGHSLHEFAKTALPEKVM 763 (833)
Q Consensus 685 DfG~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Di~s~~~~~~~~~~~g~~l~~~~~~~~p~~~~ 763 (833)
|||++.......... .........||+.|+|||++.+ ..++.++|||| +|+++++++++..|+...
T Consensus 164 dfg~~~~~~~~~~~~---~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~s----------lG~il~~l~~g~~pf~~~ 230 (303)
T 2vwi_A 164 DFGVSAFLATGGDIT---RNKVRKTFVGTPCWMAPEVMEQVRGYDFKADIWS----------FGITAIELATGAAPYHKY 230 (303)
T ss_dssp CCHHHHHCC------------------CCCTTCCHHHHHHHHCCCTHHHHHH----------HHHHHHHHHHSSCTTTTS
T ss_pred eccchheeccCCCcc---chhhhcccCCCccccCHHHhccccCCCchhhHHH----------HHHHHHHHHhCCCCCccC
Confidence 999997654322110 0111223569999999998865 56899999999 888899999998887532
Q ss_pred ccccccchhhhccccchhh---hhhhhchHHHHHHHHHHhhccCCCCCCCCCCHHHHHHH
Q 040925 764 EIVDPSLLMEVMTNNSMIQ---EDKRVKTEECLNAIIRTGVLCSMESPFERMDMRDVVAK 820 (833)
Q Consensus 764 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~ 820 (833)
...+. ............ .........++..+.+++.+||+.||++|||++|+++.
T Consensus 231 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~~ll~h 288 (303)
T 2vwi_A 231 PPMKV--LMLTLQNDPPSLETGVQDKEMLKKYGKSFRKMISLCLQKDPEKRPTAAELLRH 288 (303)
T ss_dssp CGGGH--HHHHHTSSCCCTTC-----CCCCCCCHHHHHHHHHHCCSSGGGSCCHHHHHTS
T ss_pred chhhH--HHHHhccCCCccccccccchhhhhhhHHHHHHHHHHccCChhhCcCHHHHhhC
Confidence 21111 000000000000 00001112245678899999999999999999999874
No 256
>2r3i_A Cell division protein kinase 2; serine/threonine-protein kinase, cell cycle, inhibition, cyclin-dependent kinase, cancer, ATP-binding; HET: SCF; 1.28A {Homo sapiens} PDB: 2r3j_A* 2r3k_A* 2r3l_A* 2r3m_A* 2r3n_A* 2r3o_A* 2r3p_A* 2r3q_A* 1jvp_P* 1buh_A 1ckp_A* 1di8_A* 1dm2_A* 1f5q_A 1fin_A* 1fq1_B* 1fvt_A* 1fvv_A* 1g5s_A* 1gih_A* ...
Probab=100.00 E-value=2.1e-36 Score=320.09 Aligned_cols=260 Identities=22% Similarity=0.303 Sum_probs=197.7
Q ss_pred hcCCccCceeccCcceEEEEEEECCCceEEEEEEeeccCC--cchhHHHHHHHHHhhcCCCccceEeeEeecCCCCCCce
Q 040925 530 TGEFSSSNMIGQGSFGYVYKGTLGEDEMIVAVKVINLKYK--GASRSFVAECEALRNIRHRNLIKIITICSSTDFKGTDF 607 (833)
Q Consensus 530 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~--~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~ 607 (833)
.++|++.+.||+|+||.||+|++..+++.||||+++.... ...+.+.+|++++++++||||+++++++...+ .
T Consensus 2 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~-----~ 76 (299)
T 2r3i_A 2 MENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHTEN-----K 76 (299)
T ss_dssp CTTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEC--------CCHHHHHHHHHHTTCCCTTBCCEEEEEEETT-----E
T ss_pred cchhhhhhhhccCCCeeEEEEEEcCCCceEEEEEeecCccchhhHHHHHHHHHHHHHcCCCCeeeEEEEEecCC-----c
Confidence 3689999999999999999999998999999999865432 23467889999999999999999999976654 8
Q ss_pred EeEEEEecCCCChhhhhccCCCccccccCCHHHHHHHHHHHHHHHHHHhhcCCCCceeeCCCCCCeeecCCCcEEEcccc
Q 040925 608 KAFVFEYMENGSLKDWLHQSDDQVEVCKLSLIQRVNIAIDVASAMEYLHHHCQPPMVHGDLKPSNVLLDHDMVAHVCDFG 687 (833)
Q Consensus 608 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~gL~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kL~DfG 687 (833)
.++||||++ |+|.+++...... .+++..++.++.|++.||+|||+. ||+||||||+||+++.++.+||+|||
T Consensus 77 ~~lv~e~~~-~~L~~~~~~~~~~----~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dlkp~Nili~~~~~~kl~dfg 148 (299)
T 2r3i_A 77 LYLVFEFLH-QDLKKFMDASALT----GIPLPLIKSYLFQLLQGLAFCHSH---RVLHRDLKPQNLLINTEGAIKLADFG 148 (299)
T ss_dssp EEEEEECCS-EEHHHHHHHTTTT----CCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTSCEEECSTT
T ss_pred eEEEEEccc-CCHHHHHHhhhcc----CCCHHHHHHHHHHHHHHHHHHHHC---CccCCCCCHHHeEEcCCCCEEECcch
Confidence 999999997 5999999876432 689999999999999999999999 99999999999999999999999999
Q ss_pred cccccCcccccccccCCCccccccccccccCccccCCCC-CCcccccccCCcCCCccccCCccHHHHHHHhCCCcccccc
Q 040925 688 LAKFLSDHQLDTAVKTPSSSIGLKGTVGYVAPEYGMGSE-ASMTGDIFTGRRPIDAVFNEGHSLHEFAKTALPEKVMEIV 766 (833)
Q Consensus 688 ~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~-~~~~~Di~s~~~~~~~~~~~g~~l~~~~~~~~p~~~~~~~ 766 (833)
++........ ......||+.|+|||++.+.. ++.++|||| +|+++++++++..|+......
T Consensus 149 ~~~~~~~~~~--------~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~s----------lG~~l~~l~~g~~pf~~~~~~ 210 (299)
T 2r3i_A 149 LARAFGVPVR--------TYTHEVVTLWYRAPEILLGAKYYSTAVDIWS----------LGCIFAEMVTRRALFPGDSEI 210 (299)
T ss_dssp HHHHHCCCSB--------CTTSCBCCCTTCCHHHHTTCSSCCTHHHHHH----------HHHHHHHHHHSSCSCCCSSHH
T ss_pred hhhhccCCcc--------ccCcccccccccCcHHhhccccCChHHHHHH----------HHHHHHHHHhCCCCCCCccHH
Confidence 9976543211 112245899999999988765 799999999 788888888888876532211
Q ss_pred cccch--h-----------hhcc---ccchhh----hhhhhchHHHHHHHHHHhhccCCCCCCCCCCHHHHHHH
Q 040925 767 DPSLL--M-----------EVMT---NNSMIQ----EDKRVKTEECLNAIIRTGVLCSMESPFERMDMRDVVAK 820 (833)
Q Consensus 767 ~~~~~--~-----------~~~~---~~~~~~----~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~ 820 (833)
+.... . .... ...... .........++..+.+++.+||+.||++|||++|+++.
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~~~l~h 284 (299)
T 2r3i_A 211 DQLFRIFRTLGTPDEVVWPGVTSMPDYKPSFPKWARQDFSKVVPPLDEDGRSLLSQMLHYDPNKRISAKAALAH 284 (299)
T ss_dssp HHHHHHHHHHCCCCTTTSTTGGGSTTCCTTSCCCCCCCHHHHSTTCCHHHHHHHHHHTCSSTTTSCCHHHHHTS
T ss_pred HHHHHHHHHhCCCchhhhhHhhcCcccchhhhcccchhhHhhCCCCCHHHHHHHHHhcCcCcccCCCHHHHhcC
Confidence 10000 0 0000 000000 00000112245678899999999999999999999873
No 257
>3fme_A Dual specificity mitogen-activated protein kinase; active mutant, structural genomics consortium, SCG, binding, nucleotide-binding, phosphoprotein; HET: STU; 2.26A {Homo sapiens} PDB: 3enm_A
Probab=100.00 E-value=8.7e-37 Score=321.49 Aligned_cols=256 Identities=22% Similarity=0.270 Sum_probs=185.9
Q ss_pred hcCCccCceeccCcceEEEEEEECCCceEEEEEEeeccCCc-c-hhHHHHHHHHHhhcCCCccceEeeEeecCCCCCCce
Q 040925 530 TGEFSSSNMIGQGSFGYVYKGTLGEDEMIVAVKVINLKYKG-A-SRSFVAECEALRNIRHRNLIKIITICSSTDFKGTDF 607 (833)
Q Consensus 530 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~-~-~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~ 607 (833)
.++|++.+.||+|+||.||+|++..+++.||+|+++..... . .+.+.++...++.++||||+++++++...+ .
T Consensus 6 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~h~~iv~~~~~~~~~~-----~ 80 (290)
T 3fme_A 6 ADDLEPIMELGRGAYGVVEKMRHVPSGQIMAVKRIRATVNSQEQKRLLMDLDISMRTVDCPFTVTFYGALFREG-----D 80 (290)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEC---CHHHHHHHHHHHHHHHTTCCCTTBCCEEEEEECSS-----S
T ss_pred HHhhhhHHhcCCCCCeEEEEEEecCCCeEEEEEEeecccCcHHHHHHHHHHHHHHHhCCCCeEEEEeeeeeccC-----C
Confidence 46899999999999999999999999999999999754222 2 233445555678889999999999986554 7
Q ss_pred EeEEEEecCCCChhhhhccCCCccccccCCHHHHHHHHHHHHHHHHHHhhcCCCCceeeCCCCCCeeecCCCcEEEcccc
Q 040925 608 KAFVFEYMENGSLKDWLHQSDDQVEVCKLSLIQRVNIAIDVASAMEYLHHHCQPPMVHGDLKPSNVLLDHDMVAHVCDFG 687 (833)
Q Consensus 608 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~gL~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kL~DfG 687 (833)
.++||||++ |+|.+++...... ...+++..++.++.|++.||+|||++. ||+||||||+||+++.++.+||+|||
T Consensus 81 ~~lv~e~~~-~~l~~~l~~~~~~--~~~~~~~~~~~i~~qi~~~l~~lH~~~--~i~H~dlkp~Nil~~~~~~~kl~Dfg 155 (290)
T 3fme_A 81 VWICMELMD-TSLDKFYKQVIDK--GQTIPEDILGKIAVSIVKALEHLHSKL--SVIHRDVKPSNVLINALGQVKMCDFG 155 (290)
T ss_dssp EEEEEECCS-EEHHHHHHHHHHT--TCCCCHHHHHHHHHHHHHHHHHHHHHS--CCCCCCCSGGGCEECTTCCEEBCCC-
T ss_pred EEEEEehhc-cchHHHHHHHHhc--CCCCCHHHHHHHHHHHHHHHHHHhhcC--CeecCCCCHHHEEECCCCCEEEeecC
Confidence 899999997 5888877642111 116899999999999999999999853 89999999999999999999999999
Q ss_pred cccccCcccccccccCCCccccccccccccCcccc----CCCCCCcccccccCCcCCCccccCCccHHHHHHHhCCCccc
Q 040925 688 LAKFLSDHQLDTAVKTPSSSIGLKGTVGYVAPEYG----MGSEASMTGDIFTGRRPIDAVFNEGHSLHEFAKTALPEKVM 763 (833)
Q Consensus 688 ~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~----~~~~~~~~~Di~s~~~~~~~~~~~g~~l~~~~~~~~p~~~~ 763 (833)
+++....... .....||+.|+|||++ .+..++.++|||| .|+++++++++..|+...
T Consensus 156 ~~~~~~~~~~---------~~~~~~t~~y~aPE~~~~~~~~~~~~~~~Di~s----------lG~il~~l~~g~~p~~~~ 216 (290)
T 3fme_A 156 ISGYLVDDVA---------KDIDAGCKPYMAPERINPELNQKGYSVKSDIWS----------LGITMIELAILRFPYDSW 216 (290)
T ss_dssp -----------------------CCCCCCSCHHHHSCCTTC--CCHHHHHHH----------HHHHHHHHHHTSCSSCCC
T ss_pred Cccccccccc---------ccccCCCccccChhhcChhhcCcCCCcHHHHHH----------HHHHHHHHHHCCCCcccc
Confidence 9986644321 1123599999999995 5667899999999 888999999999887532
Q ss_pred ccccccchhhhccccchhhhhhhhchHHHHHHHHHHhhccCCCCCCCCCCHHHHHHH
Q 040925 764 EIVDPSLLMEVMTNNSMIQEDKRVKTEECLNAIIRTGVLCSMESPFERMDMRDVVAK 820 (833)
Q Consensus 764 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~ 820 (833)
....... ........ .......+++.+.+++.+||+.||++|||++|+++.
T Consensus 217 ~~~~~~~-~~~~~~~~-----~~~~~~~~~~~~~~li~~~l~~~p~~Rpt~~e~l~h 267 (290)
T 3fme_A 217 GTPFQQL-KQVVEEPS-----PQLPADKFSAEFVDFTSQCLKKNSKERPTYPELMQH 267 (290)
T ss_dssp SCHHHHH-HHHHHSCC-----CCCCTTTSCHHHHHHHHHHTCSSGGGSCCHHHHTTS
T ss_pred CchHHHH-HHHhccCC-----CCcccccCCHHHHHHHHHHhhcChhhCcCHHHHHhC
Confidence 1111111 11111110 111122345678999999999999999999999873
No 258
>2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X*
Probab=100.00 E-value=2e-36 Score=327.65 Aligned_cols=256 Identities=21% Similarity=0.314 Sum_probs=198.9
Q ss_pred hcCCccCceeccCcceEEEEEEECCCceEEEEEEeeccCCcc---h--------------hHHHHHHHHHhhcCCCccce
Q 040925 530 TGEFSSSNMIGQGSFGYVYKGTLGEDEMIVAVKVINLKYKGA---S--------------RSFVAECEALRNIRHRNLIK 592 (833)
Q Consensus 530 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~---~--------------~~~~~E~~~l~~l~h~niv~ 592 (833)
.++|++.+.||+|+||.||+|++ +++.||||++....... . +.+.+|++++++++||||++
T Consensus 30 ~~~y~~~~~lg~G~~g~V~~~~~--~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~ 107 (348)
T 2pml_X 30 INDYRIIRTLNQGKFNKIILCEK--DNKFYALKKYEKSLLEKKRDFTKSNNDKISIKSKYDDFKNELQIITDIKNEYCLT 107 (348)
T ss_dssp ETTEEEEEEEECCSSCCEEEEEE--TTEEEEEEEEEHHHHSSCEEECCCSSSSCCEEEHHHHHHHHHHHHTTCCCTTBCC
T ss_pred cCceEEEEEEcCCCCeEEEEEEc--CCceEEEEEeecccccchhhhccccchhhhHHhHHHHHHHHHHHHHhCCCCCcce
Confidence 46899999999999999999999 89999999997432111 1 78999999999999999999
Q ss_pred EeeEeecCCCCCCceEeEEEEecCCCChhhh------hccCCCccccccCCHHHHHHHHHHHHHHHHHHhh-cCCCCcee
Q 040925 593 IITICSSTDFKGTDFKAFVFEYMENGSLKDW------LHQSDDQVEVCKLSLIQRVNIAIDVASAMEYLHH-HCQPPMVH 665 (833)
Q Consensus 593 ~~~~~~~~~~~~~~~~~lv~e~~~~gsL~~~------l~~~~~~~~~~~l~~~~~~~i~~qi~~gL~~LH~-~~~~~ivH 665 (833)
+++++...+ ..++||||+++|+|.++ +..... ..+++..++.++.|++.||+|||+ . ||+|
T Consensus 108 ~~~~~~~~~-----~~~lv~e~~~~~~L~~~~~~~~~l~~~~~----~~~~~~~~~~i~~qi~~~l~~lH~~~---~i~H 175 (348)
T 2pml_X 108 CEGIITNYD-----EVYIIYEYMENDSILKFDEYFFVLDKNYT----CFIPIQVIKCIIKSVLNSFSYIHNEK---NICH 175 (348)
T ss_dssp CSEEEESSS-----EEEEEEECCTTCBSSEESSSEESSCSSSC----CCCCHHHHHHHHHHHHHHHHHHHHTS---CEEC
T ss_pred EEEEEeeCC-----eEEEEEeccCCCcHHHHHHHhhhhhhccc----cCCCHHHHHHHHHHHHHHHHHHhccC---CEee
Confidence 999986654 89999999999999999 554222 278999999999999999999999 8 9999
Q ss_pred eCCCCCCeeecCCCcEEEcccccccccCcccccccccCCCccccccccccccCccccCCC-CCCc-ccccccCCcCCCcc
Q 040925 666 GDLKPSNVLLDHDMVAHVCDFGLAKFLSDHQLDTAVKTPSSSIGLKGTVGYVAPEYGMGS-EASM-TGDIFTGRRPIDAV 743 (833)
Q Consensus 666 ~Dlkp~NIll~~~~~~kL~DfG~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~-~~Di~s~~~~~~~~ 743 (833)
|||||+||+++.++.+||+|||.+....... .....||+.|+|||++.+. .++. ++||||
T Consensus 176 ~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~~----------~~~~~~~~~y~aPE~~~~~~~~~~~~~Di~s-------- 237 (348)
T 2pml_X 176 RDVKPSNILMDKNGRVKLSDFGESEYMVDKK----------IKGSRGTYEFMPPEFFSNESSYNGAKVDIWS-------- 237 (348)
T ss_dssp CCCCGGGEEECTTSCEEECCCTTCEECBTTE----------ECSSCSCGGGCCGGGGSSCCCEEHHHHHHHH--------
T ss_pred cCCChHhEEEcCCCcEEEecccccccccccc----------ccCCCCCcCccCchhhcCCCCCCcchhhHHH--------
Confidence 9999999999999999999999998654431 1224699999999999887 6666 999999
Q ss_pred ccCCccHHHHHHHhCCCcccccccccchhhhccccchhhh------------hhhhchHHHHHHHHHHhhccCCCCCCCC
Q 040925 744 FNEGHSLHEFAKTALPEKVMEIVDPSLLMEVMTNNSMIQE------------DKRVKTEECLNAIIRTGVLCSMESPFER 811 (833)
Q Consensus 744 ~~~g~~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~l~~li~~cl~~dP~~R 811 (833)
.|+++++++++..|+...... ................ ........++..+.+++.+||+.||++|
T Consensus 238 --lG~il~~l~~g~~pf~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~R 314 (348)
T 2pml_X 238 --LGICLYVMFYNVVPFSLKISL-VELFNNIRTKNIEYPLDRNHFLYPLTNKKSTCSNNFLSNEDIDFLKLFLRKNPAER 314 (348)
T ss_dssp --HHHHHHHHHHSSCSSCCSSCS-HHHHHHHTSCCCCCCCSSSSSTTTTCC--------CCCHHHHHHHHHHCCSSGGGS
T ss_pred --HHHHHHHHHhCCCCCCCCCcH-HHHHHHHhccCcCCccchhhhhccccccccccchhhcCHHHHHHHHHHccCChhhC
Confidence 788889999988887532210 0111111111000000 0000113356778999999999999999
Q ss_pred CCHHHHHHH
Q 040925 812 MDMRDVVAK 820 (833)
Q Consensus 812 Pt~~eil~~ 820 (833)
||++|+++.
T Consensus 315 ps~~e~l~h 323 (348)
T 2pml_X 315 ITSEDALKH 323 (348)
T ss_dssp CCHHHHHTS
T ss_pred CCHHHHhcC
Confidence 999999873
No 259
>2i6l_A Mitogen-activated protein kinase 6; MAPK6, ERK3, extracellular signal regulated kinase 3, serine phosphorylation, threonine phosphorylation; 2.25A {Homo sapiens}
Probab=100.00 E-value=2.7e-36 Score=322.62 Aligned_cols=262 Identities=19% Similarity=0.263 Sum_probs=194.5
Q ss_pred cCCccCceeccCcceEEEEEEECCCceEEEEEEeeccCCcchhHHHHHHHHHhhcCCCccceEeeEeecCC---------
Q 040925 531 GEFSSSNMIGQGSFGYVYKGTLGEDEMIVAVKVINLKYKGASRSFVAECEALRNIRHRNLIKIITICSSTD--------- 601 (833)
Q Consensus 531 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~--------- 601 (833)
++|++.+.||+|+||.||+|++..+++.||+|++........+.+.+|++++++++||||+++++++....
T Consensus 11 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~~ 90 (320)
T 2i6l_A 11 SRYMDLKPLGCGGNGLVFSAVDNDCDKRVAIKKIVLTDPQSVKHALREIKIIRRLDHDNIVKVFEILGPSGSQLTDDVGS 90 (320)
T ss_dssp TTEEEEEECC-----CEEEEEETTTTEEEEEEEEECCSHHHHHHHHHHHHHHHTCCCTTBCCEEEEECTTSCBCCC----
T ss_pred CceeEEEEeccCCCeEEEEEEECCCCeEEEEEEEecCChHHHHHHHHHHHHHHhcCCCCeeEEEEecccccccccccccc
Confidence 58999999999999999999999899999999997665555678899999999999999999999875432
Q ss_pred CCCCceEeEEEEecCCCChhhhhccCCCccccccCCHHHHHHHHHHHHHHHHHHhhcCCCCceeeCCCCCCeeec-CCCc
Q 040925 602 FKGTDFKAFVFEYMENGSLKDWLHQSDDQVEVCKLSLIQRVNIAIDVASAMEYLHHHCQPPMVHGDLKPSNVLLD-HDMV 680 (833)
Q Consensus 602 ~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~gL~~LH~~~~~~ivH~Dlkp~NIll~-~~~~ 680 (833)
.......++||||++ |+|.+++... .+++..++.++.|++.||+|||+. ||+||||||+||+++ +++.
T Consensus 91 ~~~~~~~~lv~e~~~-~~L~~~~~~~-------~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~ 159 (320)
T 2i6l_A 91 LTELNSVYIVQEYME-TDLANVLEQG-------PLLEEHARLFMYQLLRGLKYIHSA---NVLHRDLKPANLFINTEDLV 159 (320)
T ss_dssp CCSCSEEEEEEECCS-EEHHHHHTTC-------CCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCSGGGEEEETTTTE
T ss_pred ccccCceeEEeeccC-CCHHHHhhcC-------CccHHHHHHHHHHHHHHHHHHHhC---CEecCCCCHHHEEEcCCCCe
Confidence 123457899999998 5999999753 589999999999999999999999 999999999999997 5679
Q ss_pred EEEcccccccccCcccccccccCCCccccccccccccCccccCC-CCCCcccccccCCcCCCccccCCccHHHHHHHhCC
Q 040925 681 AHVCDFGLAKFLSDHQLDTAVKTPSSSIGLKGTVGYVAPEYGMG-SEASMTGDIFTGRRPIDAVFNEGHSLHEFAKTALP 759 (833)
Q Consensus 681 ~kL~DfG~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Di~s~~~~~~~~~~~g~~l~~~~~~~~p 759 (833)
+||+|||+++........ ........||+.|+|||++.+ ..++.++|||| +|+++++++++..|
T Consensus 160 ~kl~Dfg~~~~~~~~~~~-----~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~s----------lG~il~el~~g~~p 224 (320)
T 2i6l_A 160 LKIGDFGLARIMDPHYSH-----KGHLSEGLVTKWYRSPRLLLSPNNYTKAIDMWA----------AGCIFAEMLTGKTL 224 (320)
T ss_dssp EEECCCTTCBCC-------------CCCGGGSCCTTCCHHHHHCTTCCCHHHHHHH----------HHHHHHHHHHSSCS
T ss_pred EEEccCccccccCCCccc-----ccccccccccccccCcHHhcCcccCCchhhhHh----------HHHHHHHHHhCCCC
Confidence 999999999876432211 111223458999999998765 67899999999 78888899998888
Q ss_pred Ccccccccccchhhhccccch-----------------------hhhhhhhchHHHHHHHHHHhhccCCCCCCCCCCHHH
Q 040925 760 EKVMEIVDPSLLMEVMTNNSM-----------------------IQEDKRVKTEECLNAIIRTGVLCSMESPFERMDMRD 816 (833)
Q Consensus 760 ~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~e 816 (833)
+......+ ........... ...........++..+.+++.+||+.||++|||++|
T Consensus 225 f~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e 302 (320)
T 2i6l_A 225 FAGAHELE--QMQLILESIPVVHEEDRQELLSVIPVYIRNDMTEPHKPLTQLLPGISREAVDFLEQILTFSPMDRLTAEE 302 (320)
T ss_dssp SCCSSHHH--HHHHHHHHSCCCCHHHHHHHHTTSCHHHHHHTTSCCCCHHHHSTTCCHHHHHHHHTTSCSSGGGSCCHHH
T ss_pred CCCCCHHH--HHHHHHHhcCCCchhhhhhhhhcCcccccccccCCCCChhHhcchhhHHHHHHHHHHcCCCccccCCHHH
Confidence 75222110 00000000000 000000111234677899999999999999999999
Q ss_pred HHHH
Q 040925 817 VVAK 820 (833)
Q Consensus 817 il~~ 820 (833)
+++.
T Consensus 303 ll~h 306 (320)
T 2i6l_A 303 ALSH 306 (320)
T ss_dssp HHTS
T ss_pred HhCC
Confidence 9874
No 260
>1wak_A Serine/threonine-protein kinase SPRK1; SRPK, transferase, alternative splicing, ATP-binding, chromosome partition, differentiation, mRNA processing; 1.73A {Homo sapiens} PDB: 1wbp_A* 3beg_A* 2x7g_A*
Probab=100.00 E-value=3.8e-36 Score=331.93 Aligned_cols=261 Identities=20% Similarity=0.274 Sum_probs=199.8
Q ss_pred hcCCccCceeccCcceEEEEEEECCCceEEEEEEeeccCCcchhHHHHHHHHHhhcC--------CCccceEeeEeecCC
Q 040925 530 TGEFSSSNMIGQGSFGYVYKGTLGEDEMIVAVKVINLKYKGASRSFVAECEALRNIR--------HRNLIKIITICSSTD 601 (833)
Q Consensus 530 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~--------h~niv~~~~~~~~~~ 601 (833)
.++|++.+.||+|+||.||+|++..+++.||||+++.. ....+.+.+|++++++++ ||||+++++++....
T Consensus 36 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~-~~~~~~~~~E~~~l~~l~~~~~~~~~~~~iv~~~~~~~~~~ 114 (397)
T 1wak_A 36 NGRYHVIRKLGWGHFSTVWLSWDIQGKKFVAMKVVKSA-EHYTETALDEIRLLKSVRNSDPNDPNREMVVQLLDDFKISG 114 (397)
T ss_dssp TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSC-HHHHHHHHHHHHHHHHHHHSCTTCGGGGGBCCEEEEEEEEE
T ss_pred CCeEEEEEEeeecCCeeEEEEEecCCCeEEEEEEEecC-CcchHHHHHHHHHHHHHhhcCCCCCCcceeeeeecceeecC
Confidence 46899999999999999999999999999999999633 234567889999999995 788999999876321
Q ss_pred CCCCceEeEEEEecCCCChhhhhccCCCccccccCCHHHHHHHHHHHHHHHHHHhhcCCCCceeeCCCCCCeeecCCC--
Q 040925 602 FKGTDFKAFVFEYMENGSLKDWLHQSDDQVEVCKLSLIQRVNIAIDVASAMEYLHHHCQPPMVHGDLKPSNVLLDHDM-- 679 (833)
Q Consensus 602 ~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~gL~~LH~~~~~~ivH~Dlkp~NIll~~~~-- 679 (833)
......++||||+ +|++.+++...... .+++..++.++.||+.||+|||+++ ||+||||||+|||++.++
T Consensus 115 -~~~~~~~lv~e~~-~~~l~~~~~~~~~~----~~~~~~~~~i~~qi~~aL~~lH~~~--givHrDikp~NIll~~~~~~ 186 (397)
T 1wak_A 115 -VNGTHICMVFEVL-GHHLLKWIIKSNYQ----GLPLPCVKKIIQQVLQGLDYLHTKC--RIIHTDIKPENILLSVNEQY 186 (397)
T ss_dssp -TTEEEEEEEECCC-CCBHHHHHHHTTTS----CCCHHHHHHHHHHHHHHHHHHHHTT--CEECCCCSGGGEEECCCHHH
T ss_pred -CCCceEEEEEecc-CccHHHHHHhcccC----CCCHHHHHHHHHHHHHHHHHHHHhC--CEecCCCCHHHeeEeccchh
Confidence 1234789999999 56777776654322 6899999999999999999999964 899999999999999775
Q ss_pred -----------------------------------------------cEEEcccccccccCcccccccccCCCccccccc
Q 040925 680 -----------------------------------------------VAHVCDFGLAKFLSDHQLDTAVKTPSSSIGLKG 712 (833)
Q Consensus 680 -----------------------------------------------~~kL~DfG~a~~~~~~~~~~~~~~~~~~~~~~g 712 (833)
.+||+|||+|+...... ....|
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~DfG~a~~~~~~~-----------~~~~g 255 (397)
T 1wak_A 187 IRRLAAEATEWQRSGAPPPSGSAVSTAPATAGNFLVNPLEPKNAEKLKVKIADLGNACWVHKHF-----------TEDIQ 255 (397)
T ss_dssp HHHHHHHHC---------------------CCTTSCCTTSGGGGGGCCEEECCGGGCEETTBCS-----------CSCCS
T ss_pred hhhhhhhhHHHhhcCCCCCCCCccccCCcccccccccccccccccccceEeccccccccccccC-----------ccCCC
Confidence 79999999998654321 12469
Q ss_pred cccccCccccCCCCCCcccccccCCcCCCccccCCccHHHHHHHhCCCccccccccc----ch---hhh-----------
Q 040925 713 TVGYVAPEYGMGSEASMTGDIFTGRRPIDAVFNEGHSLHEFAKTALPEKVMEIVDPS----LL---MEV----------- 774 (833)
Q Consensus 713 t~~y~aPE~~~~~~~~~~~Di~s~~~~~~~~~~~g~~l~~~~~~~~p~~~~~~~~~~----~~---~~~----------- 774 (833)
|+.|+|||++.+..++.++|||| +|+++++++++..|+......+.. .. ...
T Consensus 256 t~~y~aPE~~~~~~~~~~~Diws----------lG~il~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 325 (397)
T 1wak_A 256 TRQYRSLEVLIGSGYNTPADIWS----------TACMAFELATGDYLFEPHSGEEYTRDEDHIALIIELLGKVPRKLIVA 325 (397)
T ss_dssp CGGGCCHHHHHTSCCCTHHHHHH----------HHHHHHHHHHSSCSCCCCCCSSSCHHHHHHHHHHHHHCSCCHHHHHH
T ss_pred CCcccCChhhcCCCCCcHHHHHH----------HHHHHHHHhhCCCCCCCCcccccCchHHHHHHHHHhcCCCChHHhhc
Confidence 99999999999999999999999 888899999998887522111000 00 000
Q ss_pred -------cccc--------------chhhhhhhhchHHHHHHHHHHhhccCCCCCCCCCCHHHHHHH
Q 040925 775 -------MTNN--------------SMIQEDKRVKTEECLNAIIRTGVLCSMESPFERMDMRDVVAK 820 (833)
Q Consensus 775 -------~~~~--------------~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~ 820 (833)
.... ............+.+..+.+++.+||+.||++|||++|+++.
T Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~h 392 (397)
T 1wak_A 326 GKYSKEFFTKKGDLKHITKLKPWGLFEVLVEKYEWSQEEAAGFTDFLLPMLELIPEKRATAAECLRH 392 (397)
T ss_dssp CTTGGGTBCTTSSBSSCCCCCCCCHHHHHHHTSCCCHHHHHHHHHHHGGGGCSSGGGSCCHHHHHTS
T ss_pred ccccccccCCccccccccccCCcchhHhhhhhcccchhhHHHHHHHHHHHhccChhhcCCHHHHhhC
Confidence 0000 000000011245677889999999999999999999999863
No 261
>3an0_A Dual specificity mitogen-activated protein kinase; auto inhibition state, activation helix, serine/threonine-PR kinase; HET: ANK; 2.60A {Homo sapiens} PDB: 3vn9_A*
Probab=100.00 E-value=2.4e-36 Score=325.83 Aligned_cols=257 Identities=21% Similarity=0.286 Sum_probs=197.0
Q ss_pred HhcCCccCceeccCcceEEEEEEECCCceEEEEEEeeccCC-cchhHHHHHHHH-HhhcCCCccceEeeEeecCCCCCCc
Q 040925 529 ATGEFSSSNMIGQGSFGYVYKGTLGEDEMIVAVKVINLKYK-GASRSFVAECEA-LRNIRHRNLIKIITICSSTDFKGTD 606 (833)
Q Consensus 529 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~-~~~~~~~~E~~~-l~~l~h~niv~~~~~~~~~~~~~~~ 606 (833)
..++|++.+.||+|+||.||+|++..+++.||||+++.... .....+..|..+ ++.++||||+++++++...+
T Consensus 49 ~~~~~~~~~~lG~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~e~~~~~~~~~h~~iv~~~~~~~~~~----- 123 (340)
T 3an0_A 49 KADDLEPIMELGRGAYGVVEKMRHVPSGQIMAVKRIRATVNSQEQKRLLMDLDISMRTVDCPFTVTFYGALFREG----- 123 (340)
T ss_dssp CSSCEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSCCCCHHHHHHHHHHHHHHTTCCCTTTCCEEEEEECSS-----
T ss_pred ehhheeEeeEecccCCEEEEEEEEcCCCCEEEEEEeccccCcHHHHHHHHHHHHHHhhcCCCcEEEEeeEEEeCC-----
Confidence 34689999999999999999999988999999999975432 233455666665 77789999999999986654
Q ss_pred eEeEEEEecCCCChhhhhccCCCccccccCCHHHHHHHHHHHHHHHHHHhhcCCCCceeeCCCCCCeeecCCCcEEEccc
Q 040925 607 FKAFVFEYMENGSLKDWLHQSDDQVEVCKLSLIQRVNIAIDVASAMEYLHHHCQPPMVHGDLKPSNVLLDHDMVAHVCDF 686 (833)
Q Consensus 607 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~gL~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kL~Df 686 (833)
..++||||+++ +|.+++...... ...+++..++.++.|++.||+|||+.. ||+||||||+||+++.++.+||+||
T Consensus 124 ~~~lv~e~~~~-~L~~~l~~~~~~--~~~l~~~~~~~i~~qi~~~l~~lH~~~--~ivH~Dlkp~NIl~~~~~~~kl~Df 198 (340)
T 3an0_A 124 DVWICMELMDT-SLDKFYKQVIDK--GQTIPEDILGKIAVSIVKALEHLHSKL--SVIHRDVKPSNVLINALGQVKMCDF 198 (340)
T ss_dssp CEEEEECCCSE-EHHHHHHHHHHT--SCCCCHHHHHHHHHHHHHHHHHHHHHT--CCCCCSCCSTTEEECSTTCEEECCC
T ss_pred cEEEEHHHhhC-cHHHHHHHHHhc--CCCCCHHHHHHHHHHHHHHHHHHhhcC--CeecCCCCHHHEEECCCCCEEEeeC
Confidence 78999999975 999988742111 116899999999999999999999742 8999999999999999999999999
Q ss_pred ccccccCcccccccccCCCccccccccccccCccccC----CCCCCcccccccCCcCCCccccCCccHHHHHHHhCCCcc
Q 040925 687 GLAKFLSDHQLDTAVKTPSSSIGLKGTVGYVAPEYGM----GSEASMTGDIFTGRRPIDAVFNEGHSLHEFAKTALPEKV 762 (833)
Q Consensus 687 G~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~----~~~~~~~~Di~s~~~~~~~~~~~g~~l~~~~~~~~p~~~ 762 (833)
|+++........ ....||+.|+|||++. +..++.++|||| +|+++++++++..|+..
T Consensus 199 g~~~~~~~~~~~---------~~~~gt~~y~aPE~~~~~~~~~~~~~~~Di~s----------lG~il~el~tg~~p~~~ 259 (340)
T 3an0_A 199 GISGYLVDSVAK---------TIDAGCKPYMAPERINPELNQKGYSVKSDIWS----------LGITMIELAILRFPYDS 259 (340)
T ss_dssp SHHHHHSCHHHH---------HHSSCCCCCCCHHHHSCCTTCCSCCHHHHHHH----------HHHHHHHHHHTSCSSCC
T ss_pred CCceeccccccc---------ccCCCCccccCccccccccccCCCCchhhHHH----------HHHHHHHHHHCCCCCcc
Confidence 999866442211 1235999999999964 347899999999 88899999999988753
Q ss_pred cccccccchhhhccccchhhhhhhhchHHHHHHHHHHhhccCCCCCCCCCCHHHHHHH
Q 040925 763 MEIVDPSLLMEVMTNNSMIQEDKRVKTEECLNAIIRTGVLCSMESPFERMDMRDVVAK 820 (833)
Q Consensus 763 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~ 820 (833)
.......+ ........ .......++..+.+++.+||..||++|||+.|+++.
T Consensus 260 ~~~~~~~~-~~~~~~~~-----~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~ell~h 311 (340)
T 3an0_A 260 WGTPFQQL-KQVVEEPS-----PQLPADKFSAEFVDFTSQCLKKNSKERPTYPELMQH 311 (340)
T ss_dssp CSCHHHHH-HHHHHSCC-----CCCCGGGSCHHHHHHHHHHTCSSGGGSCCHHHHTTS
T ss_pred ccchHHHH-HHHhcCCC-----CCCCcccCCHHHHHHHHHHccCCcccCcCHHHHhcC
Confidence 21110111 11111100 011112346678999999999999999999999874
No 262
>1blx_A Cyclin-dependent kinase 6; inhibitor protein, cyclin-dependent kinase, cell cycle control, alpha/beta, complex (inhibitor protein/kinase); 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 1bi7_A 1bi8_A 1g3n_A 2f2c_B* 1jow_B* 2euf_B* 1xo2_B* 3nup_A* 3nux_A* 2w9z_B 2w99_B 2w96_B 2w9f_B
Probab=100.00 E-value=8e-36 Score=319.80 Aligned_cols=265 Identities=21% Similarity=0.311 Sum_probs=201.2
Q ss_pred HhcCCccCceeccCcceEEEEEEEC-CCceEEEEEEeeccCC--cchhHHHHHHHHHhhc---CCCccceEeeEeecCCC
Q 040925 529 ATGEFSSSNMIGQGSFGYVYKGTLG-EDEMIVAVKVINLKYK--GASRSFVAECEALRNI---RHRNLIKIITICSSTDF 602 (833)
Q Consensus 529 ~~~~y~~~~~lg~G~~g~Vy~~~~~-~~~~~vavK~~~~~~~--~~~~~~~~E~~~l~~l---~h~niv~~~~~~~~~~~ 602 (833)
..++|++.+.||+|+||.||+|++. .+++.||+|+++.... .....+.+|+.+++.+ +||||+++++++.....
T Consensus 9 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~~i~~~~~~~~~~~~ 88 (326)
T 1blx_A 9 ADQQYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLETFEHPNVVRLFDVCTVSRT 88 (326)
T ss_dssp GGGTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEEEEEBCTTSCBCTHHHHHHHHHHHHHTCCTTBCCEEEEEEEEEC
T ss_pred chhceeeeeeecccccEEEEEEEecCCCCEEEEEEEeccCcccccCCchhhHHHHHHHhhhccCCCCeEeeeeeeeeccc
Confidence 4578999999999999999999995 6789999999974432 2335677888888877 79999999999864332
Q ss_pred CCCceEeEEEEecCCCChhhhhccCCCccccccCCHHHHHHHHHHHHHHHHHHhhcCCCCceeeCCCCCCeeecCCCcEE
Q 040925 603 KGTDFKAFVFEYMENGSLKDWLHQSDDQVEVCKLSLIQRVNIAIDVASAMEYLHHHCQPPMVHGDLKPSNVLLDHDMVAH 682 (833)
Q Consensus 603 ~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~gL~~LH~~~~~~ivH~Dlkp~NIll~~~~~~k 682 (833)
......++||||++ |+|.+++...... .+++..++.++.|++.||+|||+. ||+||||||+||+++.++.+|
T Consensus 89 ~~~~~~~lv~e~~~-~~L~~~l~~~~~~----~~~~~~~~~~~~qi~~~l~~lH~~---gi~H~dlkp~Nili~~~~~~k 160 (326)
T 1blx_A 89 DRETKLTLVFEHVD-QDLTTYLDKVPEP----GVPTETIKDMMFQLLRGLDFLHSH---RVVHRDLKPQNILVTSSGQIK 160 (326)
T ss_dssp SSEEEEEEEEECCS-CBHHHHHHHSCTT----CSCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTCCEE
T ss_pred CCCceEEEEEecCC-CCHHHHHHhcccC----CCCHHHHHHHHHHHHHHHHHHHHC---CceeccCCHHHeEEcCCCCEE
Confidence 34457899999998 6999999875432 589999999999999999999999 999999999999999999999
Q ss_pred EcccccccccCcccccccccCCCccccccccccccCccccCCCCCCcccccccCCcCCCccccCCccHHHHHHHhCCCcc
Q 040925 683 VCDFGLAKFLSDHQLDTAVKTPSSSIGLKGTVGYVAPEYGMGSEASMTGDIFTGRRPIDAVFNEGHSLHEFAKTALPEKV 762 (833)
Q Consensus 683 L~DfG~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~s~~~~~~~~~~~g~~l~~~~~~~~p~~~ 762 (833)
|+|||+++....... .....||+.|+|||++.+..++.++|||| +|+++++++++..|+..
T Consensus 161 l~Dfg~~~~~~~~~~---------~~~~~~~~~y~aPE~~~~~~~~~~~Di~s----------lG~il~~l~~g~~pf~~ 221 (326)
T 1blx_A 161 LADFGLARIYSFQMA---------LTSVVVTLWYRAPEVLLQSSYATPVDLWS----------VGCIFAEMFRRKPLFRG 221 (326)
T ss_dssp ECSCCSCCCCCGGGG---------GCCCCCCCTTCCHHHHTTCCCCTHHHHHH----------HHHHHHHHHHSSCSCCC
T ss_pred EecCcccccccCCCC---------ccccccccceeCHHHHhcCCCCcchhHHH----------HHHHHHHHHcCCCCCCC
Confidence 999999986653221 12346899999999999999999999999 77888888888877652
Q ss_pred cccccc--------------cchhhhcccc----chhhhhhhhchHHHHHHHHHHhhccCCCCCCCCCCHHHHHHH
Q 040925 763 MEIVDP--------------SLLMEVMTNN----SMIQEDKRVKTEECLNAIIRTGVLCSMESPFERMDMRDVVAK 820 (833)
Q Consensus 763 ~~~~~~--------------~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~ 820 (833)
....+. .+........ ............+++..+.+++.+||..||++|||+.|+++.
T Consensus 222 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~h 297 (326)
T 1blx_A 222 SSDVDQLGKILDVIGLPGEEDWPRDVALPRQAFHSKSAQPIEKFVTDIDELGKDLLLKCLTFNPAKRISAYSALSH 297 (326)
T ss_dssp SSHHHHHHHHHHHHCCCCGGGSCTTCSSCGGGSCCCCCCCGGGTCCSCCHHHHHHHHHHSCSSTTTSCCHHHHHTS
T ss_pred CCHHHHHHHHHHHcCCCCcccCccccccchhhhcccCcchhhhccccCCHHHHHHHHHHcCCCcccCCCHHHHhcC
Confidence 211000 0000000000 000000011122346678899999999999999999999863
No 263
>1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A
Probab=100.00 E-value=4.1e-36 Score=318.53 Aligned_cols=266 Identities=21% Similarity=0.255 Sum_probs=191.8
Q ss_pred HhcCCccCceeccCcceEEEEEEECCCceEEEEEEeeccCCcchhHHHHHHHHHhhcCCCccceEeeEeecCC-------
Q 040925 529 ATGEFSSSNMIGQGSFGYVYKGTLGEDEMIVAVKVINLKYKGASRSFVAECEALRNIRHRNLIKIITICSSTD------- 601 (833)
Q Consensus 529 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~------- 601 (833)
..++|++.+.||+|+||.||+|++..+++.||||+++.. ....+.+.+|+.++++++||||+++++++....
T Consensus 4 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~-~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~ 82 (303)
T 1zy4_A 4 YASDFEEIAVLGQGAFGQVVKARNALDSRYYAIKKIRHT-EEKLSTILSEVMLLASLNHQYVVRYYAAWLERRNFVKPMT 82 (303)
T ss_dssp HHHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEEE-HHHHHHHHHHHHHHTTCCCTTBCCEEEEEEECCCCCC---
T ss_pred ccccchhhheeccCCcEEEEEEEEcCCCeEEEEEEEecc-HHHHHHHHHHHHHHHhcCchHHHHHHHHHHhhcchhhhhc
Confidence 356799999999999999999999989999999999643 234567899999999999999999999876531
Q ss_pred -CCCCceEeEEEEecCCCChhhhhccCCCccccccCCHHHHHHHHHHHHHHHHHHhhcCCCCceeeCCCCCCeeecCCCc
Q 040925 602 -FKGTDFKAFVFEYMENGSLKDWLHQSDDQVEVCKLSLIQRVNIAIDVASAMEYLHHHCQPPMVHGDLKPSNVLLDHDMV 680 (833)
Q Consensus 602 -~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~gL~~LH~~~~~~ivH~Dlkp~NIll~~~~~ 680 (833)
.......++||||+++|+|.+++..... .+++..++.++.|++.||+|||+. +|+||||||+||+++.++.
T Consensus 83 ~~~~~~~~~lv~e~~~~~~L~~~l~~~~~-----~~~~~~~~~i~~qi~~~l~~LH~~---~i~H~dlkp~Nil~~~~~~ 154 (303)
T 1zy4_A 83 AVKKKSTLFIQMEYCENGTLYDLIHSENL-----NQQRDEYWRLFRQILEALSYIHSQ---GIIHRDLKPMNIFIDESRN 154 (303)
T ss_dssp ---CEEEEEEEEECCCSCBHHHHHHHSCG-----GGCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTSC
T ss_pred ccccCCceEEEEecCCCCCHHHhhhcccc-----ccchHHHHHHHHHHHHHHHHHHhC---CeecccCCHHhEEEcCCCC
Confidence 1234578999999999999999986432 578899999999999999999999 9999999999999999999
Q ss_pred EEEcccccccccCccccccc------ccCCCccccccccccccCccccCCC-CCCcccccccCCcCCCccccCCccHHHH
Q 040925 681 AHVCDFGLAKFLSDHQLDTA------VKTPSSSIGLKGTVGYVAPEYGMGS-EASMTGDIFTGRRPIDAVFNEGHSLHEF 753 (833)
Q Consensus 681 ~kL~DfG~a~~~~~~~~~~~------~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~Di~s~~~~~~~~~~~g~~l~~~ 753 (833)
+||+|||++........... ...........||+.|+|||++.+. .++.++|||| .|++++++
T Consensus 155 ~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~s----------lG~il~~l 224 (303)
T 1zy4_A 155 VKIGDFGLAKNVHRSLDILKLDSQNLPGSSDNLTSAIGTAMYVATEVLDGTGHYNEKIDMYS----------LGIIFFEM 224 (303)
T ss_dssp EEECCCCCCSCTTC-------------------------CTTSCHHHHTSCSCCCTHHHHHH----------HHHHHHHH
T ss_pred EEEeeCcchhhcccccchhccccccccccccccccCCCcccccCcccccCCCCCcchhhHHH----------HHHHHHHH
Confidence 99999999986643211000 0001122345699999999998764 6899999999 66666776
Q ss_pred HHHhCCCcccccccccchhhhccccchhhhhhhhchHHHHHHHHHHhhccCCCCCCCCCCHHHHHHH
Q 040925 754 AKTALPEKVMEIVDPSLLMEVMTNNSMIQEDKRVKTEECLNAIIRTGVLCSMESPFERMDMRDVVAK 820 (833)
Q Consensus 754 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~ 820 (833)
++ |+..... .............. .........+..+.+++.+||+.||++|||++|+++.
T Consensus 225 ~~---p~~~~~~-~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~~ll~h 284 (303)
T 1zy4_A 225 IY---PFSTGME-RVNILKKLRSVSIE---FPPDFDDNKMKVEKKIIRLLIDHDPNKRPGARTLLNS 284 (303)
T ss_dssp HS---CCSSHHH-HHHHHHHHHSTTCC---CCTTCCTTTSHHHHHHHHHHTCSSGGGSCCHHHHHHS
T ss_pred Hh---ccCCchh-HHHHHHhccccccc---cCccccccchHHHHHHHHHHHhcCcccCcCHHHHhCC
Confidence 65 2211000 00000000000000 0011122345668899999999999999999999874
No 264
>4exu_A Mitogen-activated protein kinase 13; P38 kinase, transferase; 1.70A {Homo sapiens} PDB: 4eyj_A* 4eym_A* 3coi_A
Probab=100.00 E-value=7.5e-36 Score=325.28 Aligned_cols=258 Identities=18% Similarity=0.221 Sum_probs=195.1
Q ss_pred hcCCccCceeccCcceEEEEEEECCCceEEEEEEeeccCCc--chhHHHHHHHHHhhcCCCccceEeeEeecCCCC-CCc
Q 040925 530 TGEFSSSNMIGQGSFGYVYKGTLGEDEMIVAVKVINLKYKG--ASRSFVAECEALRNIRHRNLIKIITICSSTDFK-GTD 606 (833)
Q Consensus 530 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~--~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~-~~~ 606 (833)
.++|.+.+.||+|+||.||+|.+..+++.||||+++..... ..+.+.+|+.++++++||||+++++++...+.. ...
T Consensus 41 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~ 120 (371)
T 4exu_A 41 PKTYVSPTHVGSGAYGSVCSAIDKRSGEKVAIKKLSRPFQSEIFAKRAYRELLLLKHMQHENVIGLLDVFTPASSLRNFY 120 (371)
T ss_dssp ETTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSSTTCC
T ss_pred cccEEEEeEEecCCCeEEEEEEECCCCCEEEEEEecccccchhHHHHHHHHHHHHHhcCCCCchhhhhheeccCCcccce
Confidence 35899999999999999999999999999999999754322 246788999999999999999999998665411 112
Q ss_pred eEeEEEEecCCCChhhhhccCCCccccccCCHHHHHHHHHHHHHHHHHHhhcCCCCceeeCCCCCCeeecCCCcEEEccc
Q 040925 607 FKAFVFEYMENGSLKDWLHQSDDQVEVCKLSLIQRVNIAIDVASAMEYLHHHCQPPMVHGDLKPSNVLLDHDMVAHVCDF 686 (833)
Q Consensus 607 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~gL~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kL~Df 686 (833)
..++||||++ |+|.+++.. .+++..++.++.|++.||+|||+. +|+||||||+||+++.++.+||+||
T Consensus 121 ~~~lv~e~~~-~~l~~~~~~--------~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dikp~NIll~~~~~~kL~Df 188 (371)
T 4exu_A 121 DFYLVMPFMQ-TDLQKIMGM--------EFSEEKIQYLVYQMLKGLKYIHSA---GVVHRDLKPGNLAVNEDCELKILDF 188 (371)
T ss_dssp CCEEEEECCC-EEHHHHTTS--------CCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTCCEEECST
T ss_pred eEEEEEcccc-ccHHHHhhc--------CCCHHHHHHHHHHHHHHHHHHHHC---CCcCCCcCHHHeEECCCCCEEEEec
Confidence 3499999997 589888743 589999999999999999999999 9999999999999999999999999
Q ss_pred ccccccCcccccccccCCCccccccccccccCccccCC-CCCCcccccccCCcCCCccccCCccHHHHHHHhCCCccccc
Q 040925 687 GLAKFLSDHQLDTAVKTPSSSIGLKGTVGYVAPEYGMG-SEASMTGDIFTGRRPIDAVFNEGHSLHEFAKTALPEKVMEI 765 (833)
Q Consensus 687 G~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Di~s~~~~~~~~~~~g~~l~~~~~~~~p~~~~~~ 765 (833)
|+++..... .....||+.|+|||++.+ ..++.++|||| .|+++++++++..|+.....
T Consensus 189 g~a~~~~~~-----------~~~~~~t~~y~aPE~~~~~~~~~~~~Diws----------lG~il~el~~g~~pf~~~~~ 247 (371)
T 4exu_A 189 GLARHADAE-----------MTGYVVTRWYRAPEVILSWMHYNQTVDIWS----------VGCIMAEMLTGKTLFKGKDY 247 (371)
T ss_dssp TCC-------------------CTTCCCTTSCHHHHSCCSCCCTTHHHHH----------HHHHHHHHHHSSCSCCCSSH
T ss_pred CcccccccC-----------cCCcccCccccCHHHhcCCCCCCcHHhHHH----------HHHHHHHHHhCCCCCCCCCh
Confidence 999865432 123468999999999877 67999999999 78888999998888753221
Q ss_pred ccccchh---------------------hhccccc-hhhhhhhhchHHHHHHHHHHhhccCCCCCCCCCCHHHHHHH
Q 040925 766 VDPSLLM---------------------EVMTNNS-MIQEDKRVKTEECLNAIIRTGVLCSMESPFERMDMRDVVAK 820 (833)
Q Consensus 766 ~~~~~~~---------------------~~~~~~~-~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~ 820 (833)
.+..... ....... ............+++.+.+++.+||+.||++|||++|+++.
T Consensus 248 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~h 324 (371)
T 4exu_A 248 LDQLTQILKVTGVPGTEFVQKLNDKAAKSYIQSLPQTPRKDFTQLFPRASPQAADLLEKMLELDVDKRLTAAQALTH 324 (371)
T ss_dssp HHHHHHHHHHHCCCCHHHHTTCSCHHHHHHHHHSCCCCCCCHHHHSTTSCHHHHHHHHHHSCSCTTTSCCHHHHHTS
T ss_pred HHHHHHHHHHhCCCcHHHHHHhhhhhhhhhhhccCCCcchhHHHhccccChHHHHHHHHHCCCChhhcCCHHHHhcC
Confidence 1100000 0000000 00000000112345678999999999999999999999875
No 265
>2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding, serine/threonine-protein kinase, CGD3_920, transferase; HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB: 3dfa_A 3ma6_A*
Probab=100.00 E-value=5.4e-36 Score=314.72 Aligned_cols=254 Identities=24% Similarity=0.286 Sum_probs=201.4
Q ss_pred HHhcCCccCceeccCcceEEEEEEECCCceEEEEEEeeccC--CcchhHHHHHHHHHhhcCCCccceEeeEeecCCCCCC
Q 040925 528 KATGEFSSSNMIGQGSFGYVYKGTLGEDEMIVAVKVINLKY--KGASRSFVAECEALRNIRHRNLIKIITICSSTDFKGT 605 (833)
Q Consensus 528 ~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~ 605 (833)
...++|++.+.||+|+||.||+|++..+++.||+|++.... ....+.+.+|++++++++||||+++++++....
T Consensus 19 ~~~~~y~i~~~lg~G~~g~V~~~~~~~~~~~valK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~---- 94 (287)
T 2wei_A 19 TFAERYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTILREVELLKKLDHPNIMKLFEILEDSS---- 94 (287)
T ss_dssp HHHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGBSSSCHHHHHHHHHHHHTCCCTTBCCEEEEEECSS----
T ss_pred HHhhcceeeEEEcCCCCEEEEEEEEcCCCcEEEEEEecccccchHHHHHHHHHHHHHHhccCCCccEEEEEEeCCC----
Confidence 34568999999999999999999999899999999996442 234567899999999999999999999976554
Q ss_pred ceEeEEEEecCCCChhhhhccCCCccccccCCHHHHHHHHHHHHHHHHHHhhcCCCCceeeCCCCCCeeecCC---CcEE
Q 040925 606 DFKAFVFEYMENGSLKDWLHQSDDQVEVCKLSLIQRVNIAIDVASAMEYLHHHCQPPMVHGDLKPSNVLLDHD---MVAH 682 (833)
Q Consensus 606 ~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~gL~~LH~~~~~~ivH~Dlkp~NIll~~~---~~~k 682 (833)
..++||||+++++|.+++.... .+++.+++.++.|++.||+|||+. +|+||||||+||+++.+ +.+|
T Consensus 95 -~~~lv~e~~~~~~L~~~l~~~~------~~~~~~~~~i~~qi~~~l~~LH~~---~i~H~dl~p~NIlv~~~~~~~~~k 164 (287)
T 2wei_A 95 -SFYIVGELYTGGELFDEIIKRK------RFSEHDAARIIKQVFSGITYMHKH---NIVHRDLKPENILLESKEKDCDIK 164 (287)
T ss_dssp -EEEEEECCCCSCBHHHHHHHHS------SCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEESCSSTTCCEE
T ss_pred -eEEEEEEccCCCCHHHHHHhcC------CCCHHHHHHHHHHHHHHHHHHHHC---CeeccCCChhhEEEecCCCcccEE
Confidence 8999999999999999887644 689999999999999999999999 99999999999999754 4799
Q ss_pred EcccccccccCcccccccccCCCccccccccccccCccccCCCCCCcccccccCCcCCCccccCCccHHHHHHHhCCCcc
Q 040925 683 VCDFGLAKFLSDHQLDTAVKTPSSSIGLKGTVGYVAPEYGMGSEASMTGDIFTGRRPIDAVFNEGHSLHEFAKTALPEKV 762 (833)
Q Consensus 683 L~DfG~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~s~~~~~~~~~~~g~~l~~~~~~~~p~~~ 762 (833)
|+|||++........ .....||+.|+|||++.+ .++.++|||| +|+++++++++..|+..
T Consensus 165 L~Dfg~~~~~~~~~~---------~~~~~~~~~y~aPE~~~~-~~~~~~Di~s----------lG~~l~~l~~g~~p~~~ 224 (287)
T 2wei_A 165 IIDFGLSTCFQQNTK---------MKDRIGTAYYIAPEVLRG-TYDEKCDVWS----------AGVILYILLSGTPPFYG 224 (287)
T ss_dssp ECSTTGGGTBCCCSS---------CSCHHHHHTTCCHHHHTT-CCCTHHHHHH----------HHHHHHHHHHSSCSSCC
T ss_pred EeccCcceeecCCCc---------cccccCcccccChHHhcC-CCCCchhhHh----------HHHHHHHHHhCCCCCCC
Confidence 999999986543211 122458999999998876 4899999999 88889999999888753
Q ss_pred cccccccchhhhccccchhhhhhhhchHHHHHHHHHHhhccCCCCCCCCCCHHHHHHH
Q 040925 763 MEIVDPSLLMEVMTNNSMIQEDKRVKTEECLNAIIRTGVLCSMESPFERMDMRDVVAK 820 (833)
Q Consensus 763 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~ 820 (833)
.... ............. .......+++.+.+++.+||..||++|||++|+++.
T Consensus 225 ~~~~--~~~~~~~~~~~~~---~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~ell~h 277 (287)
T 2wei_A 225 KNEY--DILKRVETGKYAF---DLPQWRTISDDAKDLIRKMLTFHPSLRITATQCLEH 277 (287)
T ss_dssp SSHH--HHHHHHHHCCCCC---CSGGGTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHS
T ss_pred CCHH--HHHHHHHcCCCCC---CchhhhhcCHHHHHHHHHHcccChhhCcCHHHHhcC
Confidence 2211 1111111111100 011112345678899999999999999999999874
No 266
>1z57_A Dual specificity protein kinase CLK1; protein tyrosine kinase, splicing, human, 10Z-hymendialdisine, structural genomics; HET: DBQ; 1.70A {Homo sapiens} PDB: 2vag_A*
Probab=100.00 E-value=6.2e-36 Score=322.63 Aligned_cols=256 Identities=19% Similarity=0.257 Sum_probs=197.5
Q ss_pred hcCCccCceeccCcceEEEEEEE-CCCceEEEEEEeeccCCcchhHHHHHHHHHhhcCCC------ccceEeeEeecCCC
Q 040925 530 TGEFSSSNMIGQGSFGYVYKGTL-GEDEMIVAVKVINLKYKGASRSFVAECEALRNIRHR------NLIKIITICSSTDF 602 (833)
Q Consensus 530 ~~~y~~~~~lg~G~~g~Vy~~~~-~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~------niv~~~~~~~~~~~ 602 (833)
.++|++.+.||+|+||.||+|.+ ..+++.||||+++.. ....+.+.+|+++++.++|+ +++++++++...+
T Consensus 13 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~-~~~~~~~~~e~~~l~~l~~~~~~~~~~i~~~~~~~~~~~- 90 (339)
T 1z57_A 13 SARYEIVDTLGEGAFGKVVECIDHKAGGRHVAVKIVKNV-DRYCEAARSEIQVLEHLNTTDPNSTFRCVQMLEWFEHHG- 90 (339)
T ss_dssp TTTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEECSS-HHHHHHHHHHHHHHHHHHHHCTTCTTCBCCEEEEEEETT-
T ss_pred cCceEEEEEEecCCCeEEEEEEecCCCCcEEEEEEEecC-CchhHHHHHHHHHHHHhhhcCCCCceeeEeeecccccCC-
Confidence 35899999999999999999998 557899999999633 23456788999999999765 4999999976554
Q ss_pred CCCceEeEEEEecCCCChhhhhccCCCccccccCCHHHHHHHHHHHHHHHHHHhhcCCCCceeeCCCCCCeeecC-----
Q 040925 603 KGTDFKAFVFEYMENGSLKDWLHQSDDQVEVCKLSLIQRVNIAIDVASAMEYLHHHCQPPMVHGDLKPSNVLLDH----- 677 (833)
Q Consensus 603 ~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~gL~~LH~~~~~~ivH~Dlkp~NIll~~----- 677 (833)
..++||||+ +++|.+++...... .+++.+++.++.|++.||+|||+. +|+||||||+||+++.
T Consensus 91 ----~~~lv~e~~-~~~l~~~l~~~~~~----~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~Dlkp~Nil~~~~~~~~ 158 (339)
T 1z57_A 91 ----HICIVFELL-GLSTYDFIKENGFL----PFRLDHIRKMAYQICKSVNFLHSN---KLTHTDLKPENILFVQSDYTE 158 (339)
T ss_dssp ----EEEEEEECC-CCBHHHHHHHTTTC----CCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEESCCCEEE
T ss_pred ----cEEEEEcCC-CCCHHHHHHhcCCC----CCcHHHHHHHHHHHHHHHHHHHHC---CCcCCCCCHHHEEEecccccc
Confidence 899999999 78999999876432 688999999999999999999999 9999999999999987
Q ss_pred --------------CCcEEEcccccccccCcccccccccCCCccccccccccccCccccCCCCCCcccccccCCcCCCcc
Q 040925 678 --------------DMVAHVCDFGLAKFLSDHQLDTAVKTPSSSIGLKGTVGYVAPEYGMGSEASMTGDIFTGRRPIDAV 743 (833)
Q Consensus 678 --------------~~~~kL~DfG~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~s~~~~~~~~ 743 (833)
++.+||+|||+++..... .....||+.|+|||++.+..++.++||||
T Consensus 159 ~~~~~~~~~~~~~~~~~~kl~Dfg~~~~~~~~-----------~~~~~gt~~y~aPE~~~~~~~~~~~Di~s-------- 219 (339)
T 1z57_A 159 AYNPKIKRDERTLINPDIKVVDFGSATYDDEH-----------HSTLVSTRHYRAPEVILALGWSQPCDVWS-------- 219 (339)
T ss_dssp EEC----CEEEEESCCCEEECCCSSCEETTSC-----------CCSSCSCGGGCCHHHHTTSCCCTHHHHHH--------
T ss_pred ccCCccccccccccCCCceEeeCcccccCccc-----------cccccCCccccChHHhhCCCCCcchhhHH--------
Confidence 668999999999764332 11346999999999999999999999999
Q ss_pred ccCCccHHHHHHHhCCCcccccccccchhhhccccc-----------------------------------hhhhhhhhc
Q 040925 744 FNEGHSLHEFAKTALPEKVMEIVDPSLLMEVMTNNS-----------------------------------MIQEDKRVK 788 (833)
Q Consensus 744 ~~~g~~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~~-----------------------------------~~~~~~~~~ 788 (833)
+|+++++++++..|+......+............ .........
T Consensus 220 --lG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (339)
T 1z57_A 220 --IGCILIEYYLGFTVFPTHDSKEHLAMMERILGPLPKHMIQKTRKRKYFHHDRLDWDEHSSAGRYVSRACKPLKEFMLS 297 (339)
T ss_dssp --HHHHHHHHHHSSCSCCCSCHHHHHHHHHHHHCSCCHHHHHHCSCGGGEETTEECCCTTSHHHHHHHHHCCCGGGGCSC
T ss_pred --HHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCCCHHHHhhccchhHHhhccccccccccccchhhhcCcchhhhccc
Confidence 7788888888877765221110000000000000 000000111
Q ss_pred hHHHHHHHHHHhhccCCCCCCCCCCHHHHHHH
Q 040925 789 TEECLNAIIRTGVLCSMESPFERMDMRDVVAK 820 (833)
Q Consensus 789 ~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~ 820 (833)
...+++.+.+++.+||+.||++|||++|+++.
T Consensus 298 ~~~~~~~l~~li~~~L~~dP~~Rpt~~ell~h 329 (339)
T 1z57_A 298 QDVEHERLFDLIQKMLEYDPAKRITLREALKH 329 (339)
T ss_dssp CSHHHHHHHHHHHHHTCSSTTTSCCHHHHTTS
T ss_pred chhhHHHHHHHHHHHhCcCcccccCHHHHhcC
Confidence 23456789999999999999999999999864
No 267
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=100.00 E-value=4.6e-34 Score=306.37 Aligned_cols=291 Identities=18% Similarity=0.258 Sum_probs=147.8
Q ss_pred CCCEEEccCCcccccCCccCCCCCCCCEEEcCCCcccccCCccccCCCCCcEEECCCcccccccCchhhcCCCCccEEEc
Q 040925 24 DLEVIRIMGNSLGGKIPTTLGLLRNLVSLNVAENKFSGMFPRSICNISSLELIQLALNRFSGNLPFDIVVNLPNLKALAI 103 (833)
Q Consensus 24 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L 103 (833)
+++.++++++.++ .+|..+. ++|++|+|++|+|+++.+..|.++++|++|+|++|+++ .+++..|.++++|++|+|
T Consensus 32 ~l~~l~~~~~~l~-~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L 107 (330)
T 1xku_A 32 HLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS-KISPGAFAPLVKLERLYL 107 (330)
T ss_dssp ETTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCC-CBCTTTTTTCTTCCEEEC
T ss_pred CCeEEEecCCCcc-ccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCC-eeCHHHhcCCCCCCEEEC
Confidence 4444444444442 2333332 34444444444444444444444444444444444444 333334444444444444
Q ss_pred cCCcceeeCCccccCCCCCcEEEcccCccccccCcCccCCCcCceEecccccCCCCCCCCcccccccCCCCCCCEEEccC
Q 040925 104 GGNNFFGSIPYSLSNASNLELLDLSVNQFKGNVSIDFSSLKNLLWLNLEQNNLGTGTATDLDFVTFLTNCSSLKALSLAD 183 (833)
Q Consensus 104 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~ 183 (833)
++|.++ .+|..+. ++|++|++++|+++++.+..|.++++|++|+|++|.++.... .+..+.++++|++|++++
T Consensus 108 s~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~----~~~~~~~l~~L~~L~l~~ 180 (330)
T 1xku_A 108 SKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGI----ENGAFQGMKKLSYIRIAD 180 (330)
T ss_dssp CSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGB----CTTGGGGCTTCCEEECCS
T ss_pred CCCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCc----ChhhccCCCCcCEEECCC
Confidence 444444 2232221 344455555554444444444444555555555444432111 012234444555555555
Q ss_pred CcCcccCChhHhhhcccccEEEccCccccccCChhhhcCCCCCeEeccCCcccccCCccccCCCCCCEEEcccccCcccC
Q 040925 184 NQFGGELPHSIANLSSTVINFGIGRNQISGTIPPGIRNLVNLIGFGAEENQLHGTIPDAIGELKNLQKLCLFRNFLQGRI 263 (833)
Q Consensus 184 N~l~~~~p~~~~~l~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 263 (833)
|+++ .+|..+. ..++.|++++|++++..+..|.++++|+.|++++|++++..+..|..+++|++|+|++|.++ .+
T Consensus 181 n~l~-~l~~~~~---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~l 255 (330)
T 1xku_A 181 TNIT-TIPQGLP---PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KV 255 (330)
T ss_dssp SCCC-SCCSSCC---TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SC
T ss_pred Cccc-cCCcccc---ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cC
Confidence 5544 3333322 33455555555555555666666666777777777766666666666667777777777666 45
Q ss_pred CccccCCCCCCeEEeecccccCCCCCCCCCC------CccceeecCCceecc--cCCcccccccccceeeecCCCc
Q 040925 264 PSGLGNLTKLANLELSSNSLQGNIPSSLGNC------QNLMSFTASQNKLTG--ALPHQLLSITTLSLYLDLSNNL 331 (833)
Q Consensus 264 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l------~~L~~L~l~~N~l~~--~~p~~~~~~~~ll~~L~ls~N~ 331 (833)
|..+..+++|++|+|++|+|++..+..|+.. ++|+.|++++|.+.. ..|..+..+..+ +.++|++|+
T Consensus 256 p~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l-~~l~L~~N~ 330 (330)
T 1xku_A 256 PGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVR-AAVQLGNYK 330 (330)
T ss_dssp CTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCG-GGEEC----
T ss_pred ChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccce-eEEEecccC
Confidence 6666666677777777777766555555432 556666777776642 233444444444 556666663
No 268
>3fhr_A MAP kinase-activated protein kinase 3; kinase-inhibitor complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; HET: P4O; 1.90A {Homo sapiens} PDB: 3fxw_A* 3r1n_A* 3she_A* 2oza_A 3fyk_X* 3fyj_X* 2p3g_X* 3ka0_A* 3fpm_A* 2pzy_A* 3a2c_A* 3kc3_A* 3gok_A* 2jbo_A* 2jbp_A* 3r2y_A* 3r30_A* 3r2b_A*
Probab=100.00 E-value=4e-36 Score=322.72 Aligned_cols=255 Identities=21% Similarity=0.246 Sum_probs=175.8
Q ss_pred hcCCccCc-eeccCcceEEEEEEECCCceEEEEEEeeccCCcchhHHHHHHH-HHhhcCCCccceEeeEeecCCCCCCce
Q 040925 530 TGEFSSSN-MIGQGSFGYVYKGTLGEDEMIVAVKVINLKYKGASRSFVAECE-ALRNIRHRNLIKIITICSSTDFKGTDF 607 (833)
Q Consensus 530 ~~~y~~~~-~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~-~l~~l~h~niv~~~~~~~~~~~~~~~~ 607 (833)
.++|.+.+ .||+|+||.||+|++..+++.||||++... ....+|+. .++.++||||+++++++.... .+...
T Consensus 27 ~~~y~i~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~-----~~~~~e~~~~~~~~~h~~i~~~~~~~~~~~-~~~~~ 100 (336)
T 3fhr_A 27 TDDYQLSKQVLGLGVNGKVLECFHRRTGQKCALKLLYDS-----PKARQEVDHHWQASGGPHIVCILDVYENMH-HGKRC 100 (336)
T ss_dssp GGTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEESS-----HHHHHHHHHHHHHTTSTTBCCEEEEEEEEE-TTEEE
T ss_pred cceeEecceeeeeCCCeEEEEEEECCCCCEEEEEEecCc-----HHHHHHHHHHHHhcCCCChHHHHHHHhhcc-CCCce
Confidence 46899865 699999999999999999999999999632 22233333 456668999999999976532 22346
Q ss_pred EeEEEEecCCCChhhhhccCCCccccccCCHHHHHHHHHHHHHHHHHHhhcCCCCceeeCCCCCCeeecC---CCcEEEc
Q 040925 608 KAFVFEYMENGSLKDWLHQSDDQVEVCKLSLIQRVNIAIDVASAMEYLHHHCQPPMVHGDLKPSNVLLDH---DMVAHVC 684 (833)
Q Consensus 608 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~gL~~LH~~~~~~ivH~Dlkp~NIll~~---~~~~kL~ 684 (833)
.++||||+++|+|.+++...... .+++.+++.++.|++.||+|||+. +|+||||||+||+++. ++.+||+
T Consensus 101 ~~lv~e~~~gg~L~~~l~~~~~~----~l~~~~~~~i~~ql~~~l~~LH~~---~ivH~dlkp~NIll~~~~~~~~~kl~ 173 (336)
T 3fhr_A 101 LLIIMECMEGGELFSRIQERGDQ----AFTEREAAEIMRDIGTAIQFLHSH---NIAHRDVKPENLLYTSKEKDAVLKLT 173 (336)
T ss_dssp EEEEEECCTTEEHHHHHHTC-CC----CCBHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEESCSSTTCCEEEC
T ss_pred EEEEEeccCCCCHHHHHHhcCCC----CCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHEEEEecCCCceEEEe
Confidence 89999999999999999876432 689999999999999999999999 9999999999999976 4569999
Q ss_pred ccccccccCcccccccccCCCccccccccccccCccccCCCCCCcccccccCCcCCCccccCCccHHHHHHHhCCCcccc
Q 040925 685 DFGLAKFLSDHQLDTAVKTPSSSIGLKGTVGYVAPEYGMGSEASMTGDIFTGRRPIDAVFNEGHSLHEFAKTALPEKVME 764 (833)
Q Consensus 685 DfG~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~s~~~~~~~~~~~g~~l~~~~~~~~p~~~~~ 764 (833)
|||+++....... ....||+.|+|||++.+..++.++|||| +|+++++++++..|+....
T Consensus 174 Dfg~~~~~~~~~~----------~~~~~t~~y~aPE~~~~~~~~~~~Di~s----------lG~il~~l~~g~~pf~~~~ 233 (336)
T 3fhr_A 174 DFGFAKETTQNAL----------QTPCYTPYYVAPEVLGPEKYDKSCDMWS----------LGVIMYILLCGFPPFYSNT 233 (336)
T ss_dssp CCTTCEEC--------------------------------CHHHHHHHHHH----------HHHHHHHHHHSSCCC----
T ss_pred ccccceecccccc----------ccCCCCcCccChhhhCCCCCCchhhHHH----------HHHHHHHHHHCCCCCCCcc
Confidence 9999986543221 1245899999999998889999999999 8888999999988875222
Q ss_pred cc--cccchhhhccccchhhhhhhhchHHHHHHHHHHhhccCCCCCCCCCCHHHHHHH
Q 040925 765 IV--DPSLLMEVMTNNSMIQEDKRVKTEECLNAIIRTGVLCSMESPFERMDMRDVVAK 820 (833)
Q Consensus 765 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~ 820 (833)
.. .............. ........+++.+.+++.+||..||++|||++|+++.
T Consensus 234 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~h 288 (336)
T 3fhr_A 234 GQAISPGMKRRIRLGQYG---FPNPEWSEVSEDAKQLIRLLLKTDPTERLTITQFMNH 288 (336)
T ss_dssp -----------------C---CCTTTSTTCCHHHHHHHHHHSCSSGGGSCCHHHHHHS
T ss_pred chhhhhhHHHhhhccccc---cCchhhccCCHHHHHHHHHHCCCChhHCcCHHHHhcC
Confidence 11 11111110000000 0111112346678899999999999999999999874
No 269
>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A*
Probab=100.00 E-value=2.9e-36 Score=350.45 Aligned_cols=263 Identities=20% Similarity=0.302 Sum_probs=203.9
Q ss_pred HHHHhcCCccCceeccCcceEEEEEEECC---CceEEEEEEeeccCC-cchhHHHHHHHHHhhcCCCccceEeeEeecCC
Q 040925 526 LSKATGEFSSSNMIGQGSFGYVYKGTLGE---DEMIVAVKVINLKYK-GASRSFVAECEALRNIRHRNLIKIITICSSTD 601 (833)
Q Consensus 526 ~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~---~~~~vavK~~~~~~~-~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~ 601 (833)
.....++|++.+.||+|+||.||+|++.. .+..||+|+++.... ...+.+.+|+.++++++||||+++++++..
T Consensus 385 ~~i~~~~y~i~~~LG~G~fG~Vy~a~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~l~~~~~~-- 462 (656)
T 2j0j_A 385 YEIQRERIELGRCIGEGQFGDVHQGIYMSPENPAMAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLIGVITE-- 462 (656)
T ss_dssp TBCCGGGEEEEEEEECCSSCCEEEEEECCSSSCCEEEEEEECSSTTCHHHHHHHHHHHHHHHHCCCTTBCCEEEEECS--
T ss_pred cccccccEEEeeEEeeCCCEEEEEEEEecCCCccEEEEEEEecccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEec--
Confidence 33445789999999999999999999854 356799999864332 234678999999999999999999999743
Q ss_pred CCCCceEeEEEEecCCCChhhhhccCCCccccccCCHHHHHHHHHHHHHHHHHHhhcCCCCceeeCCCCCCeeecCCCcE
Q 040925 602 FKGTDFKAFVFEYMENGSLKDWLHQSDDQVEVCKLSLIQRVNIAIDVASAMEYLHHHCQPPMVHGDLKPSNVLLDHDMVA 681 (833)
Q Consensus 602 ~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~gL~~LH~~~~~~ivH~Dlkp~NIll~~~~~~ 681 (833)
+..++||||+++|+|.+++..... .+++..++.++.|++.||+|||+. +|+||||||+||+++.++.+
T Consensus 463 ----~~~~lv~E~~~~g~L~~~l~~~~~-----~l~~~~~~~i~~qi~~aL~~LH~~---givHrDikp~NILl~~~~~v 530 (656)
T 2j0j_A 463 ----NPVWIIMELCTLGELRSFLQVRKF-----SLDLASLILYAYQLSTALAYLESK---RFVHRDIAARNVLVSSNDCV 530 (656)
T ss_dssp ----SSCEEEEECCTTCBHHHHHHHTTT-----TCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEEEETTEE
T ss_pred ----CceEEEEEcCCCCcHHHHHHhccC-----CCCHHHHHHHHHHHHHHHHHHHhC---CccccccchHhEEEeCCCCE
Confidence 257899999999999999986532 589999999999999999999999 99999999999999999999
Q ss_pred EEcccccccccCcccccccccCCCccccccccccccCccccCCCCCCcccccccCCcCCCccccCCccHHHHHH-HhCCC
Q 040925 682 HVCDFGLAKFLSDHQLDTAVKTPSSSIGLKGTVGYVAPEYGMGSEASMTGDIFTGRRPIDAVFNEGHSLHEFAK-TALPE 760 (833)
Q Consensus 682 kL~DfG~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~s~~~~~~~~~~~g~~l~~~~~-~~~p~ 760 (833)
||+|||+++......... .....||+.|+|||++.+..++.++|||| +|++++++++ +..|+
T Consensus 531 kL~DFG~a~~~~~~~~~~-------~~~~~~t~~y~aPE~~~~~~~~~~~DiwS----------lG~il~ellt~g~~Pf 593 (656)
T 2j0j_A 531 KLGDFGLSRYMEDSTYYK-------ASKGKLPIKWMAPESINFRRFTSASDVWM----------FGVCMWEILMHGVKPF 593 (656)
T ss_dssp EECCCCCCCSCCC-----------------CCGGGCCHHHHHHCCCCHHHHHHH----------HHHHHHHHHTTSCCTT
T ss_pred EEEecCCCeecCCCccee-------ccCCCCCcceeCHHHhcCCCCCchhhHHH----------HHHHHHHHHHcCCCCC
Confidence 999999998765432211 11234788999999998889999999999 7778888875 66665
Q ss_pred cccccccccchhhhccccchhhhhhhhchHHHHHHHHHHhhccCCCCCCCCCCHHHHHHHHHHhhhh
Q 040925 761 KVMEIVDPSLLMEVMTNNSMIQEDKRVKTEECLNAIIRTGVLCSMESPFERMDMRDVVAKLCHTRET 827 (833)
Q Consensus 761 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~i~~~ 827 (833)
...... .......... ....+..+++.+.+++.+||..||++|||+.|+++.|+.+.+.
T Consensus 594 ~~~~~~--~~~~~i~~~~------~~~~~~~~~~~l~~li~~~l~~dP~~RPs~~el~~~L~~il~~ 652 (656)
T 2j0j_A 594 QGVKNN--DVIGRIENGE------RLPMPPNCPPTLYSLMTKCWAYDPSRRPRFTELKAQLSTILEE 652 (656)
T ss_dssp TTCCHH--HHHHHHHHTC------CCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred CCCCHH--HHHHHHHcCC------CCCCCccccHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHHHH
Confidence 422111 1111111100 0112234567889999999999999999999999999999764
No 270
>3e3p_A Protein kinase, putative glycogen synthase kinase; leishmaniasis, transferase; 2.00A {Leishmania major}
Probab=100.00 E-value=7.3e-36 Score=324.84 Aligned_cols=270 Identities=20% Similarity=0.217 Sum_probs=190.3
Q ss_pred hHHHHHHhcCCccCceeccCcceEEEEEEECCCceEEEEEEeeccCCcchhHHHHHHHHHhhcCCCccceEeeEeecCCC
Q 040925 523 YAELSKATGEFSSSNMIGQGSFGYVYKGTLGEDEMIVAVKVINLKYKGASRSFVAECEALRNIRHRNLIKIITICSSTDF 602 (833)
Q Consensus 523 ~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~ 602 (833)
........++|++.+.||+|+||.||+|++..+++.||||++... ........+|++.++.++||||+++++++.....
T Consensus 15 ~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~-~~~~~~~~~~~~~l~~l~h~niv~~~~~~~~~~~ 93 (360)
T 3e3p_A 15 DERSRKEMDRFQVERMAGQGTFGTVQLGKEKSTGMSVAIKKVIQD-PRFRNRELQIMQDLAVLHHPNIVQLQSYFYTLGE 93 (360)
T ss_dssp SHHHHHHHTTEEEC----------CEEEEETTTCCEEEEEEEECC-TTCCCHHHHHHHHHHHHCCTTBCCEEEEEEEECS
T ss_pred hhhchhhccceEEEEEEecCCCeEEEEEEECCCCCEEEEEEEecC-ccccHHHHHHHHHHHhcCCCCcccHHHhhhcccc
Confidence 355667789999999999999999999999989999999998643 2334567788888999999999999999865432
Q ss_pred --CCCceEeEEEEecCCCChhhhhccCCCccccccCCHHHHHHHHHHHHHHHHHHh--hcCCCCceeeCCCCCCeeecC-
Q 040925 603 --KGTDFKAFVFEYMENGSLKDWLHQSDDQVEVCKLSLIQRVNIAIDVASAMEYLH--HHCQPPMVHGDLKPSNVLLDH- 677 (833)
Q Consensus 603 --~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~gL~~LH--~~~~~~ivH~Dlkp~NIll~~- 677 (833)
......++||||+++ ++.+.+...... ...+++..++.++.|++.||.||| +. +|+||||||+||+++.
T Consensus 94 ~~~~~~~~~lv~e~~~~-~l~~~~~~~~~~--~~~~~~~~~~~~~~qi~~al~~lH~~~~---~ivH~Dlkp~NIll~~~ 167 (360)
T 3e3p_A 94 RDRRDIYLNVVMEYVPD-TLHRCCRNYYRR--QVAPPPILIKVFLFQLIRSIGCLHLPSV---NVCHRDIKPHNVLVNEA 167 (360)
T ss_dssp SCTTCEEEEEEEECCSC-BHHHHHHHHHTT--TCCCCHHHHHHHHHHHHHHHHHHTSTTT---CCBCSCCCGGGEEEETT
T ss_pred ccccceeEEEEeecccc-cHHHHHHHHhhc--ccCCCHHHHHHHHHHHHHHHHHHhCCCC---CeecCcCCHHHEEEeCC
Confidence 123347899999986 655544321100 116889999999999999999999 88 9999999999999996
Q ss_pred CCcEEEcccccccccCcccccccccCCCccccccccccccCccccCCCC-CCcccccccCCcCCCccccCCccHHHHHHH
Q 040925 678 DMVAHVCDFGLAKFLSDHQLDTAVKTPSSSIGLKGTVGYVAPEYGMGSE-ASMTGDIFTGRRPIDAVFNEGHSLHEFAKT 756 (833)
Q Consensus 678 ~~~~kL~DfG~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~-~~~~~Di~s~~~~~~~~~~~g~~l~~~~~~ 756 (833)
++.+||+|||+++....... .....||+.|+|||++.+.. ++.++|||| +|+++++++++
T Consensus 168 ~~~~kl~Dfg~a~~~~~~~~---------~~~~~gt~~y~aPE~~~~~~~~~~~~Di~s----------lG~il~ell~g 228 (360)
T 3e3p_A 168 DGTLKLCDFGSAKKLSPSEP---------NVAYICSRYYRAPELIFGNQHYTTAVDIWS----------VGCIFAEMMLG 228 (360)
T ss_dssp TTEEEECCCTTCBCCCTTSC---------CCSTTSCGGGCCHHHHTTCSSCCTHHHHHH----------HHHHHHHHHHS
T ss_pred CCcEEEeeCCCceecCCCCC---------cccccCCcceeCHHHHcCCCCCCcHHHHHH----------HHHHHHHHHhC
Confidence 89999999999987654321 12346899999999986654 899999999 78888899988
Q ss_pred hCCCcccccccccchhhhcc-------------------------ccchhhhhhhhchHHHHHHHHHHhhccCCCCCCCC
Q 040925 757 ALPEKVMEIVDPSLLMEVMT-------------------------NNSMIQEDKRVKTEECLNAIIRTGVLCSMESPFER 811 (833)
Q Consensus 757 ~~p~~~~~~~~~~~~~~~~~-------------------------~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~R 811 (833)
..|+......+ ....... ...............+++.+.+++.+||+.||++|
T Consensus 229 ~~pf~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R 306 (360)
T 3e3p_A 229 EPIFRGDNSAG--QLHEIVRVLGCPSREVLRKLNPSHTDVDLYNSKGIPWSNVFSDHSLKDAKEAYDLLSALLQYLPEER 306 (360)
T ss_dssp SCSSCCSSHHH--HHHHHHHHHCCCCHHHHHHHCTTCCCGGGGCCCCCCHHHHTTTCCCTTHHHHHHHHHHHTCSSGGGS
T ss_pred CCCcCCCChHH--HHHHHHHHcCCCCHHHHHhcccchhhccccccccCCcccccchhhccccHHHHHHHHHHhccCcccc
Confidence 88865221100 0000000 00000000000111246688999999999999999
Q ss_pred CCHHHHHHH
Q 040925 812 MDMRDVVAK 820 (833)
Q Consensus 812 Pt~~eil~~ 820 (833)
||+.|+++.
T Consensus 307 pt~~e~l~h 315 (360)
T 3e3p_A 307 MKPYEALCH 315 (360)
T ss_dssp CCHHHHTTS
T ss_pred CCHHHHhcC
Confidence 999999875
No 271
>3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1, peptide drug, prostate cancer, transferase; HET: ANP; 1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A* 3bgz_A* 3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A* 2xj0_A* 2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A* 3cxw_A* 3cy3_A* 2bik_B* ...
Probab=100.00 E-value=1.5e-36 Score=323.95 Aligned_cols=243 Identities=19% Similarity=0.273 Sum_probs=198.7
Q ss_pred HhcCCccCceeccCcceEEEEEEECCCceEEEEEEeeccCCc------chhHHHHHHHHHhhcC--CCccceEeeEeecC
Q 040925 529 ATGEFSSSNMIGQGSFGYVYKGTLGEDEMIVAVKVINLKYKG------ASRSFVAECEALRNIR--HRNLIKIITICSST 600 (833)
Q Consensus 529 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~------~~~~~~~E~~~l~~l~--h~niv~~~~~~~~~ 600 (833)
..++|++.+.||+|+||.||+|++..+++.||||+++..... ..+.+.+|+.++++++ ||||+++++++...
T Consensus 41 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~i~~~~~~~~~~ 120 (320)
T 3a99_A 41 LESQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGVIRLLDWFERP 120 (320)
T ss_dssp CTTTEEEEEECSSSSSCEEEEEEETTTTEEEEEEEEEGGGCCCEEECTTCCEEEHHHHHHHHHCSSSCSBCCEEEEEECS
T ss_pred ccCceEEEEEEeeCCCeEEEEEEECCCCcEEEEEEEecccchhhhhhhhhhHHHHHHHHHHhhccCCCCceEEEEEEecC
Confidence 456899999999999999999999999999999999754321 2356778999999996 59999999997665
Q ss_pred CCCCCceEeEEEEecCC-CChhhhhccCCCccccccCCHHHHHHHHHHHHHHHHHHhhcCCCCceeeCCCCCCeeec-CC
Q 040925 601 DFKGTDFKAFVFEYMEN-GSLKDWLHQSDDQVEVCKLSLIQRVNIAIDVASAMEYLHHHCQPPMVHGDLKPSNVLLD-HD 678 (833)
Q Consensus 601 ~~~~~~~~~lv~e~~~~-gsL~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~gL~~LH~~~~~~ivH~Dlkp~NIll~-~~ 678 (833)
+ ..++||||+.+ ++|.+++.... .+++..++.++.|++.||+|||+. +|+||||||+||+++ .+
T Consensus 121 ~-----~~~lv~e~~~~~~~L~~~l~~~~------~l~~~~~~~i~~qi~~~L~~LH~~---~ivH~Dlkp~NIll~~~~ 186 (320)
T 3a99_A 121 D-----SFVLILERPEPVQDLFDFITERG------ALQEELARSFFWQVLEAVRHCHNC---GVLHRDIKDENILIDLNR 186 (320)
T ss_dssp S-----EEEEEEECCSSEEEHHHHHHHHC------SCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEEETTT
T ss_pred C-----cEEEEEEcCCCCccHHHHHhccC------CCCHHHHHHHHHHHHHHHHHHHHC---CcEeCCCCHHHEEEeCCC
Confidence 4 89999999976 89999998644 689999999999999999999999 999999999999999 78
Q ss_pred CcEEEcccccccccCcccccccccCCCccccccccccccCccccCCCCC-CcccccccCCcCCCccccCCccHHHHHHHh
Q 040925 679 MVAHVCDFGLAKFLSDHQLDTAVKTPSSSIGLKGTVGYVAPEYGMGSEA-SMTGDIFTGRRPIDAVFNEGHSLHEFAKTA 757 (833)
Q Consensus 679 ~~~kL~DfG~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~-~~~~Di~s~~~~~~~~~~~g~~l~~~~~~~ 757 (833)
+.+||+|||+++....... ....||+.|+|||++.+..+ +.++|||| +|+++++++++.
T Consensus 187 ~~~kL~Dfg~~~~~~~~~~----------~~~~gt~~y~aPE~~~~~~~~~~~~Di~s----------lG~il~el~~g~ 246 (320)
T 3a99_A 187 GELKLIDFGSGALLKDTVY----------TDFDGTRVYSPPEWIRYHRYHGRSAAVWS----------LGILLYDMVCGD 246 (320)
T ss_dssp TEEEECCCTTCEECCSSCB----------CCCCSCGGGSCHHHHHHSCBCHHHHHHHH----------HHHHHHHHHHSS
T ss_pred CCEEEeeCccccccccccc----------cCCCCCccCCChHHhccCCCCCccchHHh----------HHHHHHHHHHCC
Confidence 9999999999987654221 12459999999999877665 68889999 888999999999
Q ss_pred CCCcccccccccchhhhccccchhhhhhhhchHHHHHHHHHHhhccCCCCCCCCCCHHHHHHH
Q 040925 758 LPEKVMEIVDPSLLMEVMTNNSMIQEDKRVKTEECLNAIIRTGVLCSMESPFERMDMRDVVAK 820 (833)
Q Consensus 758 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~ 820 (833)
.|+........ ... .....+++.+.+++.+||..||++|||++|+++.
T Consensus 247 ~pf~~~~~~~~--------~~~-------~~~~~~~~~~~~li~~~l~~dp~~Rps~~~ll~h 294 (320)
T 3a99_A 247 IPFEHDEEIIR--------GQV-------FFRQRVSSECQHLIRWCLALRPSDRPTFEEIQNH 294 (320)
T ss_dssp CSCCSHHHHHH--------CCC-------CCSSCCCHHHHHHHHHHTCSSGGGSCCHHHHHTS
T ss_pred CCCCChhhhhc--------ccc-------cccccCCHHHHHHHHHHccCChhhCcCHHHHhcC
Confidence 88753221100 000 0111235678899999999999999999999874
No 272
>1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase; HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB: 1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A* 1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A* 3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ...
Probab=100.00 E-value=3.3e-36 Score=333.07 Aligned_cols=259 Identities=23% Similarity=0.314 Sum_probs=192.7
Q ss_pred cCCccCceeccCcceEEEEEEECCCceEEEEEEeeccCCcchhHHHHHHHHHhhcCCCccceEeeEeecCCC-CCCceEe
Q 040925 531 GEFSSSNMIGQGSFGYVYKGTLGEDEMIVAVKVINLKYKGASRSFVAECEALRNIRHRNLIKIITICSSTDF-KGTDFKA 609 (833)
Q Consensus 531 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~-~~~~~~~ 609 (833)
.+|++.+.||+|+||.||+|++..+++.||||++.... +...+|++++++++||||+++++++..... .+..+.+
T Consensus 54 ~~y~~~~~lG~G~fg~Vy~~~~~~~~~~vaiK~~~~~~----~~~~~E~~il~~l~hpniv~l~~~~~~~~~~~~~~~~~ 129 (420)
T 1j1b_A 54 VSYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDK----RFKNRELQIMRKLDHCNIVRLRYFFYSSGEKKDEVYLN 129 (420)
T ss_dssp EEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEECCT----TSCCHHHHHHHTCCCTTBCCEEEEEEEEETTTTEEEEE
T ss_pred ceEEeeeEEeeCCCEEEEEEEECCCCcEEEEEEecccc----hhHHHHHHHHHHcCCCCccceeeEEeccCCCCcceeEE
Confidence 46999999999999999999999899999999986432 233579999999999999999998765321 2233577
Q ss_pred EEEEecCCCChhhhhccCCCccccccCCHHHHHHHHHHHHHHHHHHhhcCCCCceeeCCCCCCeeecCC-CcEEEccccc
Q 040925 610 FVFEYMENGSLKDWLHQSDDQVEVCKLSLIQRVNIAIDVASAMEYLHHHCQPPMVHGDLKPSNVLLDHD-MVAHVCDFGL 688 (833)
Q Consensus 610 lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~gL~~LH~~~~~~ivH~Dlkp~NIll~~~-~~~kL~DfG~ 688 (833)
+||||+++ ++.+++...... ...+++..++.++.||+.||+|||+. +|+||||||+|||++.+ +.+||+|||+
T Consensus 130 lv~e~~~~-~l~~~~~~~~~~--~~~l~~~~~~~~~~qi~~aL~~LH~~---~ivHrDlkp~NILl~~~~~~~kl~DFG~ 203 (420)
T 1j1b_A 130 LVLDYVPE-TVYRVARHYSRA--KQTLPVIYVKLYMYQLFRSLAYIHSF---GICHRDIKPQNLLLDPDTAVLKLCDFGS 203 (420)
T ss_dssp EEEECCCE-EHHHHHHHHHHT--TCCCCHHHHHHHHHHHHHHHHHHHTT---TEECSCCSGGGEEEETTTTEEEECCCTT
T ss_pred eehhcccc-cHHHHHHHHhhc--cCCCCHHHHHHHHHHHHHHHHHHHHC---CccccCCChhhEEEeCCCCeEEeccchh
Confidence 99999985 777666532110 12689999999999999999999999 99999999999999965 5789999999
Q ss_pred ccccCcccccccccCCCccccccccccccCccccCCC-CCCcccccccCCcCCCccccCCccHHHHHHHhCCCccccccc
Q 040925 689 AKFLSDHQLDTAVKTPSSSIGLKGTVGYVAPEYGMGS-EASMTGDIFTGRRPIDAVFNEGHSLHEFAKTALPEKVMEIVD 767 (833)
Q Consensus 689 a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~Di~s~~~~~~~~~~~g~~l~~~~~~~~p~~~~~~~~ 767 (833)
|+....... .....||+.|+|||++.+. .++.++|||| +|+++++++++..|+......+
T Consensus 204 a~~~~~~~~---------~~~~~~t~~y~aPE~~~~~~~~~~~~DiwS----------lG~il~ell~G~~pf~~~~~~~ 264 (420)
T 1j1b_A 204 AKQLVRGEP---------NVSYICSRYYRAPELIFGATDYTSSIDVWS----------AGCVLAELLLGQPIFPGDSGVD 264 (420)
T ss_dssp CEECCTTCC---------CCSCCSCTTSCCHHHHTTCSSCCTHHHHHH----------HHHHHHHHHHSSCSSCCSSHHH
T ss_pred hhhcccCCC---------ceeeeeCCCcCCHHHHcCCCCCCchhhhHH----------HHHHHHHHHhCCCCCCCCCHHH
Confidence 986543211 1235689999999998765 7999999999 7888889998888775222111
Q ss_pred ccchhhhcc-----------------ccchhh-----hhhhhchHHHHHHHHHHhhccCCCCCCCCCCHHHHHHH
Q 040925 768 PSLLMEVMT-----------------NNSMIQ-----EDKRVKTEECLNAIIRTGVLCSMESPFERMDMRDVVAK 820 (833)
Q Consensus 768 ~~~~~~~~~-----------------~~~~~~-----~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~ 820 (833)
. ....+. ...... +.........+..+.+++.+||..||++|||+.|+++.
T Consensus 265 ~--l~~i~~~lg~p~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~Li~~~L~~dP~~R~t~~e~l~h 337 (420)
T 1j1b_A 265 Q--LVEIIKVLGTPTREQIREMNPNYTEFKFPQIKAHPWTKVFRPRTPPEAIALCSRLLEYTPTARLTPLEACAH 337 (420)
T ss_dssp H--HHHHHHHHCSCCHHHHHHHCSCCCCCCCCCCCCCCHHHHSCTTSCHHHHHHHHHHSCSSGGGSCCHHHHHTS
T ss_pred H--HHHHHHHhCCCCHHHHHhhChhhhhhccCccCCCCHHHhcCCCCCHHHHHHHHHhccCChhHCCCHHHHhCC
Confidence 0 000000 000000 00001112335678999999999999999999999864
No 273
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=2.3e-35 Score=313.05 Aligned_cols=256 Identities=27% Similarity=0.427 Sum_probs=224.5
Q ss_pred ccEEEccCccccc--cCChhhhcCCCCCeEeccC-CcccccCCccccCCCCCCEEEcccccCcccCCccccCCCCCCeEE
Q 040925 201 VINFGIGRNQISG--TIPPGIRNLVNLIGFGAEE-NQLHGTIPDAIGELKNLQKLCLFRNFLQGRIPSGLGNLTKLANLE 277 (833)
Q Consensus 201 l~~L~l~~n~i~~--~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 277 (833)
++.|++++|.+++ .+|..|.++++|++|++++ |.+.+.+|..|+.+++|++|+|++|.+++.+|..|.++++|++|+
T Consensus 52 l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 131 (313)
T 1ogq_A 52 VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLD 131 (313)
T ss_dssp EEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEE
T ss_pred EEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEe
Confidence 4455555555555 6677788888888888884 888888888888888899999999988888888888888999999
Q ss_pred eecccccCCCCCCCCCCCccceeecCCceecccCCcccccccccceeeecCCCccCCCCCcccccCCCcCEEeccCCcCC
Q 040925 278 LSSNSLQGNIPSSLGNCQNLMSFTASQNKLTGALPHQLLSITTLSLYLDLSNNLLNGSLPLQVGHLKNLVILDISSNQFS 357 (833)
Q Consensus 278 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~ll~~L~ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~ 357 (833)
|++|++++.+|..|..+++|++|++++|++++.+|..+..+...+++|++++|.+++..|..|..++ |++|++++|.++
T Consensus 132 Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~ 210 (313)
T 1ogq_A 132 FSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLE 210 (313)
T ss_dssp CCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEE
T ss_pred CCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCccc
Confidence 9999888888888888889999999999988888888888874448899999999888899999887 999999999999
Q ss_pred CCCCccccCCCCCcEEeecCCccccccCccccCCCCCCeEEccCcccCCCchhhhcCCCCCceEECccCcCccccCCCCc
Q 040925 358 GVIPGTLSTCVCLEYLDISSNSFHGVIPLSLSFLKSIKELNVSSNNLSGQIPEFLKNLSVLEFLSLSYNHFEGEVPTKGV 437 (833)
Q Consensus 358 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~ 437 (833)
+..|..|..+++|+.|+|++|++++.+|. +..+++|++|+|++|++++.+|..+..+++|+.|++++|++++.+|..+.
T Consensus 211 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~ 289 (313)
T 1ogq_A 211 GDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGN 289 (313)
T ss_dssp ECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTT
T ss_pred CcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCcc
Confidence 99999999999999999999999976665 88899999999999999999999999999999999999999999998888
Q ss_pred cCCCccccccCCcCCCCCccc
Q 040925 438 FSNKTKISLQGNMKLCGGIDE 458 (833)
Q Consensus 438 ~~~~~~l~l~~N~~~c~~~~~ 458 (833)
+.+++.+++.+|+++||.+..
T Consensus 290 l~~L~~l~l~~N~~lc~~p~~ 310 (313)
T 1ogq_A 290 LQRFDVSAYANNKCLCGSPLP 310 (313)
T ss_dssp GGGSCGGGTCSSSEEESTTSS
T ss_pred ccccChHHhcCCCCccCCCCC
Confidence 999999999999999997553
No 274
>4e7w_A Glycogen synthase kinase 3; GSK3, PTyr195, transferase; HET: PTR; 3.30A {Ustilago maydis}
Probab=100.00 E-value=5.3e-36 Score=328.76 Aligned_cols=260 Identities=21% Similarity=0.261 Sum_probs=190.0
Q ss_pred cCCccCceeccCcceEEEEEEECCCceEEEEEEeeccCCcchhHHHHHHHHHhhcCCCccceEeeEeecCCC-CCCceEe
Q 040925 531 GEFSSSNMIGQGSFGYVYKGTLGEDEMIVAVKVINLKYKGASRSFVAECEALRNIRHRNLIKIITICSSTDF-KGTDFKA 609 (833)
Q Consensus 531 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~-~~~~~~~ 609 (833)
.+|++.+.||+|+||.||+|++..+++ ||+|++..... ...+|+++++.++||||+++++++..... .+....+
T Consensus 40 ~~Y~~~~~lG~G~~g~V~~a~~~~~~~-~aikk~~~~~~----~~~~E~~il~~l~h~niv~l~~~~~~~~~~~~~~~~~ 114 (394)
T 4e7w_A 40 IAYTNCKVIGNGSFGVVFQAKLVESDE-VAIKKVLQDKR----FKNRELQIMRIVKHPNVVDLKAFFYSNGDKKDEVFLN 114 (394)
T ss_dssp EEEEEEEEEEEETTEEEEEEEETTTEE-EEEEEEECCTT----SCCHHHHHHHTCCCTTBCCEEEEEEEESSSSSCEEEE
T ss_pred ceEEEeEEEeeCCCeEEEEEEECCCCe-EEEEEEecCcc----hHHHHHHHHHhCCCCCcceEEEEEEecCCCCCceEEE
Confidence 479999999999999999999986665 88888753322 23469999999999999999999865442 2344578
Q ss_pred EEEEecCCCChhhhhccCCCccccccCCHHHHHHHHHHHHHHHHHHhhcCCCCceeeCCCCCCeeec-CCCcEEEccccc
Q 040925 610 FVFEYMENGSLKDWLHQSDDQVEVCKLSLIQRVNIAIDVASAMEYLHHHCQPPMVHGDLKPSNVLLD-HDMVAHVCDFGL 688 (833)
Q Consensus 610 lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~gL~~LH~~~~~~ivH~Dlkp~NIll~-~~~~~kL~DfG~ 688 (833)
+||||+++ ++.+.+..... ....+++..++.++.|++.||+|||+. ||+||||||+||+++ .++.+||+|||+
T Consensus 115 lv~e~~~~-~l~~~~~~~~~--~~~~~~~~~~~~~~~qi~~aL~~LH~~---~ivHrDlkp~Nill~~~~~~~kL~DFG~ 188 (394)
T 4e7w_A 115 LVLEYVPE-TVYRASRHYAK--LKQTMPMLLIKLYMYQLLRSLAYIHSI---GICHRDIKPQNLLLDPPSGVLKLIDFGS 188 (394)
T ss_dssp EEEECCSE-EHHHHHHHHHH--TTSCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEETTTTEEEECCCTT
T ss_pred EEeeccCc-cHHHHHHHHHh--hcCCCCHHHHHHHHHHHHHHHHHHHHC---CccCCCCCHHHEEEcCCCCcEEEeeCCC
Confidence 99999986 44443332110 011689999999999999999999999 999999999999999 799999999999
Q ss_pred ccccCcccccccccCCCccccccccccccCccccCCC-CCCcccccccCCcCCCccccCCccHHHHHHHhCCCccccccc
Q 040925 689 AKFLSDHQLDTAVKTPSSSIGLKGTVGYVAPEYGMGS-EASMTGDIFTGRRPIDAVFNEGHSLHEFAKTALPEKVMEIVD 767 (833)
Q Consensus 689 a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~Di~s~~~~~~~~~~~g~~l~~~~~~~~p~~~~~~~~ 767 (833)
|+....... .....||+.|+|||++.+. .++.++|||| .|+++++++++..|+......+
T Consensus 189 a~~~~~~~~---------~~~~~~t~~y~aPE~~~~~~~~~~~~DiwS----------lG~il~ell~g~~pf~~~~~~~ 249 (394)
T 4e7w_A 189 AKILIAGEP---------NVSYICSRYYRAPELIFGATNYTTNIDIWS----------TGCVMAELMQGQPLFPGESGID 249 (394)
T ss_dssp CEECCTTCC---------CCSSCSCGGGCCHHHHTTCSSCCTHHHHHH----------HHHHHHHHHHSSCSSCCSSHHH
T ss_pred cccccCCCC---------CcccccCcCccCHHHHcCCCCCCcHHHHHH----------HHHHHHHHHhCCCCCCCCCHHH
Confidence 986643221 1235689999999998765 5899999999 7888889999888875322111
Q ss_pred ccch-h----------------hhccccc---hhhhhhhhchHHHHHHHHHHhhccCCCCCCCCCCHHHHHHH
Q 040925 768 PSLL-M----------------EVMTNNS---MIQEDKRVKTEECLNAIIRTGVLCSMESPFERMDMRDVVAK 820 (833)
Q Consensus 768 ~~~~-~----------------~~~~~~~---~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~ 820 (833)
.-.. . ....... ...+.........++.+.+++.+||+.||++|||+.|+++.
T Consensus 250 ~l~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~h 322 (394)
T 4e7w_A 250 QLVEIIKVLGTPSREQIKTMNPNYMEHKFPQIRPHPFSKVFRPRTPPDAIDLISRLLEYTPSARLTAIEALCH 322 (394)
T ss_dssp HHHHHHHHHCCCCHHHHHHHCGGGSSSCCCCCCCCCHHHHSCTTCCHHHHHHHHHHCCSSGGGSCCHHHHHTS
T ss_pred HHHHHHHHhCCCCHHHHHhhChhhhhhccccccCCcHHHhccccCCHHHHHHHHHHhCCChhhCCCHHHHhcC
Confidence 0000 0 0000000 00000011112245678999999999999999999999875
No 275
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=100.00 E-value=2.8e-34 Score=308.15 Aligned_cols=291 Identities=20% Similarity=0.263 Sum_probs=233.8
Q ss_pred CCCCEEEccCCcccccCCccCCCCCCCCEEEcCCCcccccCCccccCCCCCcEEECCCcccccccCchhhcCCCCccEEE
Q 040925 23 SDLEVIRIMGNSLGGKIPTTLGLLRNLVSLNVAENKFSGMFPRSICNISSLELIQLALNRFSGNLPFDIVVNLPNLKALA 102 (833)
Q Consensus 23 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~ 102 (833)
.+++.++++++.++ .+|..+. ++|++|+|++|.++++.|.+|.++++|++|+|++|+++ .+++..|.++++|++|+
T Consensus 33 c~l~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~ 108 (332)
T 2ft3_A 33 CHLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKIS-KIHEKAFSPLRKLQKLY 108 (332)
T ss_dssp EETTEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC-EECGGGSTTCTTCCEEE
T ss_pred ccCCEEECCCCCcc-ccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccC-ccCHhHhhCcCCCCEEE
Confidence 36888888888884 5666554 68888999999888777888888899999999988887 66667778888899999
Q ss_pred ccCCcceeeCCccccCCCCCcEEEcccCccccccCcCccCCCcCceEecccccCCCCCCCCcccccccCCCCCCCEEEcc
Q 040925 103 IGGNNFFGSIPYSLSNASNLELLDLSVNQFKGNVSIDFSSLKNLLWLNLEQNNLGTGTATDLDFVTFLTNCSSLKALSLA 182 (833)
Q Consensus 103 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~l~~L~~L~Ls 182 (833)
|++|.++ .+|..+. ++|++|++++|+|+.+++..|.++++|++|++++|.++..... +..+..+ +|++|+++
T Consensus 109 L~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~----~~~~~~l-~L~~L~l~ 180 (332)
T 2ft3_A 109 ISKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFE----PGAFDGL-KLNYLRIS 180 (332)
T ss_dssp CCSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSC----TTSSCSC-CCSCCBCC
T ss_pred CCCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCC----cccccCC-ccCEEECc
Confidence 9998887 4454443 7888999999998888888888889999999998888642211 2335566 88889999
Q ss_pred CCcCcccCChhHhhhcccccEEEccCccccccCChhhhcCCCCCeEeccCCcccccCCccccCCCCCCEEEcccccCccc
Q 040925 183 DNQFGGELPHSIANLSSTVINFGIGRNQISGTIPPGIRNLVNLIGFGAEENQLHGTIPDAIGELKNLQKLCLFRNFLQGR 262 (833)
Q Consensus 183 ~N~l~~~~p~~~~~l~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 262 (833)
+|+++ .+|..+. ..++.|++++|.+++..+..|.++++|+.|++++|++.+..+..|..+++|++|+|++|.++ .
T Consensus 181 ~n~l~-~l~~~~~---~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~ 255 (332)
T 2ft3_A 181 EAKLT-GIPKDLP---ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-R 255 (332)
T ss_dssp SSBCS-SCCSSSC---SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-B
T ss_pred CCCCC-ccCcccc---CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-e
Confidence 99888 4666544 46888899999999888889999999999999999999888888999999999999999998 6
Q ss_pred CCccccCCCCCCeEEeecccccCCCCCCCCCC------CccceeecCCceec--ccCCcccccccccceeeecCCCc
Q 040925 263 IPSGLGNLTKLANLELSSNSLQGNIPSSLGNC------QNLMSFTASQNKLT--GALPHQLLSITTLSLYLDLSNNL 331 (833)
Q Consensus 263 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l------~~L~~L~l~~N~l~--~~~p~~~~~~~~ll~~L~ls~N~ 331 (833)
+|..+..+++|++|+|++|+|++..+..|... ++|+.|++++|.+. +..|..+..+..+ +.+++++|+
T Consensus 256 lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L-~~l~l~~n~ 331 (332)
T 2ft3_A 256 VPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDR-LAIQFGNYK 331 (332)
T ss_dssp CCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCS-TTEEC----
T ss_pred cChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchh-hhhhccccc
Confidence 78889999999999999999998877777654 67899999999987 4556666666666 678998885
No 276
>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens}
Probab=100.00 E-value=2e-36 Score=323.39 Aligned_cols=268 Identities=22% Similarity=0.281 Sum_probs=199.2
Q ss_pred HHHHHHhcCCccCceeccCcceEEEEEEECCCceEEEEEEeeccC--CcchhHHHHHHHHHhhcCCCccceEeeEeecCC
Q 040925 524 AELSKATGEFSSSNMIGQGSFGYVYKGTLGEDEMIVAVKVINLKY--KGASRSFVAECEALRNIRHRNLIKIITICSSTD 601 (833)
Q Consensus 524 ~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~ 601 (833)
.+.....++|++.+.||+|+||.||+|++.. .||+|+++... ....+.+.+|+.++++++||||+++++++....
T Consensus 26 ~~~~i~~~~~~~~~~lg~G~~g~V~~~~~~~---~~avk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~ 102 (319)
T 2y4i_B 26 QEWDIPFEQLEIGELIGKGRFGQVYHGRWHG---EVAIRLIDIERDNEDQLKAFKREVMAYRQTRHENVVLFMGACMSPP 102 (319)
T ss_dssp GGSSSCCSCEECCCBCCCSSSSEEEEEEESS---SEEEEECCCCSCCCCCCCCCCTTGGGGTTCCCTTBCCCCEEEECSS
T ss_pred ccccCCHHHeEEeeEeccCCceEEEEEEEcC---eEEEEEeecCCCCHHHHHHHHHHHHHHhcCCCCCEeEEEEEEecCC
Confidence 3334446789999999999999999999864 39999987542 233466888999999999999999999987654
Q ss_pred CCCCceEeEEEEecCCCChhhhhccCCCccccccCCHHHHHHHHHHHHHHHHHHhhcCCCCceeeCCCCCCeeecCCCcE
Q 040925 602 FKGTDFKAFVFEYMENGSLKDWLHQSDDQVEVCKLSLIQRVNIAIDVASAMEYLHHHCQPPMVHGDLKPSNVLLDHDMVA 681 (833)
Q Consensus 602 ~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~gL~~LH~~~~~~ivH~Dlkp~NIll~~~~~~ 681 (833)
..++||||+++++|.+++..... .+++.+++.++.|++.||+|||+. +|+||||||+||+++ ++.+
T Consensus 103 -----~~~iv~e~~~~~~L~~~l~~~~~-----~~~~~~~~~i~~qi~~al~~lH~~---~i~H~dlkp~NIl~~-~~~~ 168 (319)
T 2y4i_B 103 -----HLAIITSLCKGRTLYSVVRDAKI-----VLDVNKTRQIAQEIVKGMGYLHAK---GILHKDLKSKNVFYD-NGKV 168 (319)
T ss_dssp -----CEEEECBCCCSEEHHHHTTSSCC-----CCCSHHHHHHHHHHHHHHHHHHHT---TCCCCCCCSTTEEEC---CC
T ss_pred -----ceEEEeecccCCcHHHHHHhcCC-----CCCHHHHHHHHHHHHHHHHHHHhC---CccccCCChhhEEEe-CCCE
Confidence 78999999999999999986542 589999999999999999999999 999999999999998 6899
Q ss_pred EEcccccccccCcccccccccCCCccccccccccccCccccCC---------CCCCcccccccCCcCCCccccCCccHHH
Q 040925 682 HVCDFGLAKFLSDHQLDTAVKTPSSSIGLKGTVGYVAPEYGMG---------SEASMTGDIFTGRRPIDAVFNEGHSLHE 752 (833)
Q Consensus 682 kL~DfG~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~---------~~~~~~~Di~s~~~~~~~~~~~g~~l~~ 752 (833)
||+|||+++......... .........||+.|+|||++.+ ..++.++|||| +|+++++
T Consensus 169 ~l~Dfg~~~~~~~~~~~~---~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~Di~s----------lG~il~e 235 (319)
T 2y4i_B 169 VITDFGLFSISGVLQAGR---REDKLRIQNGWLCHLAPEIIRQLSPDTEEDKLPFSKHSDVFA----------LGTIWYE 235 (319)
T ss_dssp EECCCSCCC-------------CCSCBCCSGGGGTSCHHHHSCBSCC--CCCSCCCHHHHHHH----------HHHHHHH
T ss_pred EEeecCCccccccccccc---cccccccCCCcccccChHHhhhccccccccccCCCchhhHHH----------HHHHHHH
Confidence 999999987653321111 1112223469999999998764 45788999999 8888999
Q ss_pred HHHHhCCCcccccccccchhhhccccchhhhhhhhchHHHHHHHHHHhhccCCCCCCCCCCHHHHHHHHHHhhhhh
Q 040925 753 FAKTALPEKVMEIVDPSLLMEVMTNNSMIQEDKRVKTEECLNAIIRTGVLCSMESPFERMDMRDVVAKLCHTRETF 828 (833)
Q Consensus 753 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~i~~~~ 828 (833)
++++..|+...... ........... .......++..+.+++.+||..||++|||++++++.|+.+.+..
T Consensus 236 l~~g~~p~~~~~~~--~~~~~~~~~~~-----~~~~~~~~~~~l~~li~~~l~~~p~~Rpt~~~l~~~l~~l~~~~ 304 (319)
T 2y4i_B 236 LHAREWPFKTQPAE--AIIWQMGTGMK-----PNLSQIGMGKEISDILLFCWAFEQEERPTFTKLMDMLEKLPKRN 304 (319)
T ss_dssp HHHSSCSSSSCCHH--HHHHHHHTTCC-----CCCCCSSCCTTHHHHHHHHHCSSTTTSCCHHHHHHHHTTC----
T ss_pred HHhCCCCCCCCCHH--HHHHHhccCCC-----CCCCcCCCCHHHHHHHHHHhcCChhhCcCHHHHHHHHHHHHHhh
Confidence 99998887532211 11111100000 00011123456889999999999999999999999999987653
No 277
>2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer, leukemia, transferase, ATP-binding, proto- oncogene, phosphorylation; HET: HB1; 2.80A {Homo sapiens}
Probab=100.00 E-value=3e-36 Score=320.84 Aligned_cols=246 Identities=20% Similarity=0.284 Sum_probs=192.3
Q ss_pred HHHHhcCCccCceeccCcceEEEEEEECCCceEEEEEEeeccCC------cchhHHHHHHHHHhhc----CCCccceEee
Q 040925 526 LSKATGEFSSSNMIGQGSFGYVYKGTLGEDEMIVAVKVINLKYK------GASRSFVAECEALRNI----RHRNLIKIIT 595 (833)
Q Consensus 526 ~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~------~~~~~~~~E~~~l~~l----~h~niv~~~~ 595 (833)
.....++|++.+.||+|+||.||+|++..+++.||||+++.... .....+.+|+.+++++ +||||+++++
T Consensus 26 ~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~h~~i~~~~~ 105 (312)
T 2iwi_A 26 REAFEAEYRLGPLLGKGGFGTVFAGHRLTDRLQVAIKVIPRNRVLGWSPLSDSVTCPLEVALLWKVGAGGGHPGVIRLLD 105 (312)
T ss_dssp -------CEEEEEEEEETTEEEEEEECTTTCCEEEEEECCSTTTC--------CCCCHHHHHHHHHHSSCCCSSBCCEEE
T ss_pred hhhhhhceEEeeEEEcCCCEEEEEEEEccCCeEEEEEEEecccccccccchhhHHHHHHHHHHHhhcccCCCCCeeeEEE
Confidence 34456789999999999999999999998999999999965432 1234567899999999 8999999999
Q ss_pred EeecCCCCCCceEeEEEEe-cCCCChhhhhccCCCccccccCCHHHHHHHHHHHHHHHHHHhhcCCCCceeeCCCCCCee
Q 040925 596 ICSSTDFKGTDFKAFVFEY-MENGSLKDWLHQSDDQVEVCKLSLIQRVNIAIDVASAMEYLHHHCQPPMVHGDLKPSNVL 674 (833)
Q Consensus 596 ~~~~~~~~~~~~~~lv~e~-~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~gL~~LH~~~~~~ivH~Dlkp~NIl 674 (833)
++...+ ..++|||| +++++|.+++.... .+++..++.++.|++.||+|||+. +|+||||||+||+
T Consensus 106 ~~~~~~-----~~~~v~e~~~~~~~L~~~l~~~~------~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dlkp~Nil 171 (312)
T 2iwi_A 106 WFETQE-----GFMLVLERPLPAQDLFDYITEKG------PLGEGPSRCFFGQVVAAIQHCHSR---GVVHRDIKDENIL 171 (312)
T ss_dssp EC----------CEEEEECCSSEEEHHHHHHHHC------SCCHHHHHHHHHHHHHHHHHHHHH---TEECCCCSGGGEE
T ss_pred EEecCC-----eEEEEEEecCCCCCHHHHHHhcC------CCCHHHHHHHHHHHHHHHHHHHHC---CeeecCCChhhEE
Confidence 965543 78999999 78999999998654 689999999999999999999999 9999999999999
Q ss_pred ec-CCCcEEEcccccccccCcccccccccCCCccccccccccccCccccCCCCC-CcccccccCCcCCCccccCCccHHH
Q 040925 675 LD-HDMVAHVCDFGLAKFLSDHQLDTAVKTPSSSIGLKGTVGYVAPEYGMGSEA-SMTGDIFTGRRPIDAVFNEGHSLHE 752 (833)
Q Consensus 675 l~-~~~~~kL~DfG~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~-~~~~Di~s~~~~~~~~~~~g~~l~~ 752 (833)
++ .++.+||+|||+++....... ....||+.|+|||++.+..+ +.++|||| .|+++++
T Consensus 172 ~~~~~~~~kl~dfg~~~~~~~~~~----------~~~~~~~~y~aPE~~~~~~~~~~~~Di~s----------lG~il~~ 231 (312)
T 2iwi_A 172 IDLRRGCAKLIDFGSGALLHDEPY----------TDFDGTRVYSPPEWISRHQYHALPATVWS----------LGILLYD 231 (312)
T ss_dssp EETTTTEEEECCCSSCEECCSSCB----------CCCCSCTTTSCHHHHHHSCBCHHHHHHHH----------HHHHHHH
T ss_pred EeCCCCeEEEEEcchhhhcccCcc----------cccCCcccccCceeeecCCCCCccchHHH----------HHHHHHH
Confidence 99 889999999999987654321 23459999999998877665 45899999 8889999
Q ss_pred HHHHhCCCcccccccccchhhhccccchhhhhhhhchHHHHHHHHHHhhccCCCCCCCCCCHHHHHHH
Q 040925 753 FAKTALPEKVMEIVDPSLLMEVMTNNSMIQEDKRVKTEECLNAIIRTGVLCSMESPFERMDMRDVVAK 820 (833)
Q Consensus 753 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~ 820 (833)
++++..|+........ ... .....++..+.+++.+||+.||++|||++|+++.
T Consensus 232 l~~g~~pf~~~~~~~~--------~~~-------~~~~~~~~~~~~li~~~l~~~p~~Rps~~e~l~~ 284 (312)
T 2iwi_A 232 MVCGDIPFERDQEILE--------AEL-------HFPAHVSPDCCALIRRCLAPKPSSRPSLEEILLD 284 (312)
T ss_dssp HHHSSCSCCSHHHHHH--------TCC-------CCCTTSCHHHHHHHHHHTCSSTTTSCCHHHHHHS
T ss_pred HHHCCCCCCChHHHhh--------hcc-------CCcccCCHHHHHHHHHHccCChhhCcCHHHHhcC
Confidence 9999988753221100 000 0112245678899999999999999999999874
No 278
>2vx3_A Dual specificity tyrosine-phosphorylation- regula kinase 1A; serine/threonine-protein kinase, minibrain homolog, nucleotide-binding, transferase; HET: PTR D15 P6G; 2.40A {Homo sapiens} PDB: 2wo6_A* 3anq_A* 3anr_A*
Probab=100.00 E-value=1.4e-35 Score=324.58 Aligned_cols=202 Identities=24% Similarity=0.306 Sum_probs=168.2
Q ss_pred HHHhcCCccCceeccCcceEEEEEEECCCceEEEEEEeeccCCcchhHHHHHHHHHhhcC-CC-----ccceEeeEeecC
Q 040925 527 SKATGEFSSSNMIGQGSFGYVYKGTLGEDEMIVAVKVINLKYKGASRSFVAECEALRNIR-HR-----NLIKIITICSST 600 (833)
Q Consensus 527 ~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~-h~-----niv~~~~~~~~~ 600 (833)
....++|++.+.||+|+||.||+|++..+++.||||+++.. ....+.+..|+++++.++ |+ +|+++++++...
T Consensus 50 ~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~-~~~~~~~~~e~~~l~~l~~~~~~~~~~iv~~~~~~~~~ 128 (382)
T 2vx3_A 50 EKWMDRYEIDSLIGKGSFGQVVKAYDRVEQEWVAIKIIKNK-KAFLNQAQIEVRLLELMNKHDTEMKYYIVHLKRHFMFR 128 (382)
T ss_dssp CEETTTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEECSS-HHHHHHHHHHHHHHHHHHHCSSGGGGGBCCEEEEEEET
T ss_pred CEeeeeEEEEEEEeecCCEEEEEEEEcCCCcEEEEEEEecc-HHHHHHHHHHHHHHHHHHhcccccceeEEEeeeeeccC
Confidence 34467899999999999999999999999999999999632 223466788999998885 55 499999987665
Q ss_pred CCCCCceEeEEEEecCCCChhhhhccCCCccccccCCHHHHHHHHHHHHHHHHHHhhcCCCCceeeCCCCCCeeec--CC
Q 040925 601 DFKGTDFKAFVFEYMENGSLKDWLHQSDDQVEVCKLSLIQRVNIAIDVASAMEYLHHHCQPPMVHGDLKPSNVLLD--HD 678 (833)
Q Consensus 601 ~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~gL~~LH~~~~~~ivH~Dlkp~NIll~--~~ 678 (833)
+ ..++||||++ |+|.+++...... .+++..++.++.|++.||.|||++ ..||+||||||+||+++ .+
T Consensus 129 ~-----~~~lv~e~~~-~~L~~~l~~~~~~----~~~~~~~~~i~~qi~~al~~lH~~-~~~ivHrDlkp~NIll~~~~~ 197 (382)
T 2vx3_A 129 N-----HLCLVFEMLS-YNLYDLLRNTNFR----GVSLNLTRKFAQQMCTALLFLATP-ELSIIHCDLKPENILLCNPKR 197 (382)
T ss_dssp T-----EEEEEEECCC-CBHHHHHHHTTTS----CCCHHHHHHHHHHHHHHHHHHTST-TTCEECCCCSGGGEEESSTTS
T ss_pred C-----ceEEEEecCC-CCHHHHHhhcCcC----CCCHHHHHHHHHHHHHHHHHhccC-CCCEEcCCCCcccEEEecCCC
Confidence 4 8999999996 5999999876432 589999999999999999999952 22999999999999995 47
Q ss_pred CcEEEcccccccccCcccccccccCCCccccccccccccCccccCCCCCCcccccccCCcCCCccccCCccHHHHHHHhC
Q 040925 679 MVAHVCDFGLAKFLSDHQLDTAVKTPSSSIGLKGTVGYVAPEYGMGSEASMTGDIFTGRRPIDAVFNEGHSLHEFAKTAL 758 (833)
Q Consensus 679 ~~~kL~DfG~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~s~~~~~~~~~~~g~~l~~~~~~~~ 758 (833)
+.+||+|||+|+..... .....||+.|+|||++.+..++.++|||| +|+++++++++..
T Consensus 198 ~~~kL~DFG~a~~~~~~-----------~~~~~~t~~y~aPE~~~~~~~~~~~DiwS----------lG~il~elltg~~ 256 (382)
T 2vx3_A 198 SAIKIVDFGSSCQLGQR-----------IYQYIQSRFYRSPEVLLGMPYDLAIDMWS----------LGCILVEMHTGEP 256 (382)
T ss_dssp CCEEECCCTTCEETTCC-----------CCSSCSCGGGCCHHHHTTCCCCTHHHHHH----------HHHHHHHHHHSSC
T ss_pred CcEEEEeccCceecccc-----------cccccCCccccChHHHcCCCCCcHHHHHH----------HHHHHHHHHhCCC
Confidence 78999999999866432 11346999999999999999999999999 7778888888877
Q ss_pred CCc
Q 040925 759 PEK 761 (833)
Q Consensus 759 p~~ 761 (833)
|+.
T Consensus 257 pf~ 259 (382)
T 2vx3_A 257 LFS 259 (382)
T ss_dssp SSC
T ss_pred CCC
Confidence 765
No 279
>3coi_A Mitogen-activated protein kinase 13; P38D, P38delta, ERK, MAP kinase, PMK, STK26, stress-activated protein kinase, structural genomics, PSI; 2.09A {Homo sapiens}
Probab=100.00 E-value=2e-35 Score=320.19 Aligned_cols=257 Identities=19% Similarity=0.234 Sum_probs=194.7
Q ss_pred cCCccCceeccCcceEEEEEEECCCceEEEEEEeeccCCc--chhHHHHHHHHHhhcCCCccceEeeEeecCCC-CCCce
Q 040925 531 GEFSSSNMIGQGSFGYVYKGTLGEDEMIVAVKVINLKYKG--ASRSFVAECEALRNIRHRNLIKIITICSSTDF-KGTDF 607 (833)
Q Consensus 531 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~--~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~-~~~~~ 607 (833)
++|.+.+.||+|+||.||+|++..+|+.||||++...... ..+.+.+|+.++++++||||+++++++..... .....
T Consensus 24 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~ 103 (353)
T 3coi_A 24 KTYVSPTHVGSGAYGSVCSAIDKRSGEKVAIKKLSRPFQSEIFAKRAYRELLLLKHMQHENVIGLLDVFTPASSLRNFYD 103 (353)
T ss_dssp TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEESSTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSGGGCCC
T ss_pred ceEEEeeeEecCCCeEEEEEEECCCCCEEEEEEecccccchHHHHHHHHHHHHHHhcCCCCcccHhheEeccccccccee
Confidence 5799999999999999999999999999999999654322 24678899999999999999999999865431 11124
Q ss_pred EeEEEEecCCCChhhhhccCCCccccccCCHHHHHHHHHHHHHHHHHHhhcCCCCceeeCCCCCCeeecCCCcEEEcccc
Q 040925 608 KAFVFEYMENGSLKDWLHQSDDQVEVCKLSLIQRVNIAIDVASAMEYLHHHCQPPMVHGDLKPSNVLLDHDMVAHVCDFG 687 (833)
Q Consensus 608 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~gL~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kL~DfG 687 (833)
.++||||++ |+|.+++.. .+++.+++.++.|++.||+|||+. ||+||||||+||+++.++.+||+|||
T Consensus 104 ~~lv~e~~~-~~l~~~~~~--------~~~~~~~~~i~~qi~~al~~LH~~---~ivH~dlkp~NIl~~~~~~~kl~Dfg 171 (353)
T 3coi_A 104 FYLVMPFMQ-TDLQKIMGL--------KFSEEKIQYLVYQMLKGLKYIHSA---GVVHRDLKPGNLAVNEDCELKILDFG 171 (353)
T ss_dssp CEEEEECCS-EEGGGTTTS--------CCCHHHHHHHHHHHHHHHHHHHHT---TCCCSSCCGGGEEECTTCCEEECSTT
T ss_pred EEEEecccc-CCHHHHhcC--------CCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEeECCCCcEEEeecc
Confidence 599999997 599888753 589999999999999999999999 99999999999999999999999999
Q ss_pred cccccCcccccccccCCCccccccccccccCccccCC-CCCCcccccccCCcCCCccccCCccHHHHHHHhCCCcccccc
Q 040925 688 LAKFLSDHQLDTAVKTPSSSIGLKGTVGYVAPEYGMG-SEASMTGDIFTGRRPIDAVFNEGHSLHEFAKTALPEKVMEIV 766 (833)
Q Consensus 688 ~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Di~s~~~~~~~~~~~g~~l~~~~~~~~p~~~~~~~ 766 (833)
+++..... .....||+.|+|||++.+ ..++.++|||| .|+++++++++..|+......
T Consensus 172 ~~~~~~~~-----------~~~~~~t~~y~aPE~~~~~~~~~~~~Di~s----------lG~il~el~~g~~pf~~~~~~ 230 (353)
T 3coi_A 172 LARHADAE-----------MTGYVVTRWYRAPEVILSWMHYNQTVDIWS----------VGCIMAEMLTGKTLFKGKDYL 230 (353)
T ss_dssp CTTC-------------------CCSBCCSCHHHHSCCSCCCTTHHHHH----------HHHHHHHHHHSSCSSBSSCHH
T ss_pred cccCCCCC-----------ccccccCcCcCCHHHHhCcCCCCchhhHHH----------HHHHHHHHHhCCCCCCCCCHH
Confidence 99865432 112468999999999877 67899999999 788888999888887532211
Q ss_pred ccc-------------chh--------hhccccc-hhhhhhhhchHHHHHHHHHHhhccCCCCCCCCCCHHHHHHH
Q 040925 767 DPS-------------LLM--------EVMTNNS-MIQEDKRVKTEECLNAIIRTGVLCSMESPFERMDMRDVVAK 820 (833)
Q Consensus 767 ~~~-------------~~~--------~~~~~~~-~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~ 820 (833)
+.- +.. ....... ............++..+.+++.+||..||++|||++|+++.
T Consensus 231 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dp~~Rpt~~e~l~h 306 (353)
T 3coi_A 231 DQLTQILKVTGVPGTEFVQKLNDKAAKSYIQSLPQTPRKDFTQLFPRASPQAADLLEKMLELDVDKRLTAAQALTH 306 (353)
T ss_dssp HHHHHHHHHHCBCCHHHHTTCSCHHHHHHHHTSCBCSSCCTTTTCTTSCHHHHHHHHHHSCSCTTTSCCHHHHHTS
T ss_pred HHHHHHHHHhCCCCHHHHHHHhhHHHHHHHHhCcCCCCccHHHhcCCcCHHHHHHHHHHcCCCcccCCCHHHHhcC
Confidence 100 000 0000000 00000001112346778999999999999999999999864
No 280
>1q8y_A SR protein kinase; transferase; HET: ADP ADE; 2.05A {Saccharomyces cerevisiae} SCOP: d.144.1.7 PDB: 1q8z_A 1q97_A* 1q99_A* 1how_A 2jd5_A
Probab=100.00 E-value=1.6e-35 Score=323.89 Aligned_cols=261 Identities=18% Similarity=0.268 Sum_probs=199.5
Q ss_pred hcCCccCceeccCcceEEEEEEECCCceEEEEEEeeccCCcchhHHHHHHHHHhhcC-----------CCccceEeeEee
Q 040925 530 TGEFSSSNMIGQGSFGYVYKGTLGEDEMIVAVKVINLKYKGASRSFVAECEALRNIR-----------HRNLIKIITICS 598 (833)
Q Consensus 530 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~-----------h~niv~~~~~~~ 598 (833)
.++|++.+.||+|+||.||+|++..+++.||||+++.. ....+.+.+|++++++++ ||||+++++++.
T Consensus 18 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~-~~~~~~~~~e~~~l~~l~~~~~~~~~~~~~~~i~~~~~~~~ 96 (373)
T 1q8y_A 18 DARYILVRKLGWGHFSTVWLAKDMVNNTHVAMKIVRGD-KVYTEAAEDEIKLLQRVNDADNTKEDSMGANHILKLLDHFN 96 (373)
T ss_dssp TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSC-HHHHHHHHHHHHHHHHHHHTCCSHHHHHHHTTBCCCCEEEE
T ss_pred CCeEEEEEeeeecCCeEEEEEEecCCCcEEEEEEecCC-ccchhhhhHHHHHHHHhhcccccchhccccchHHHHHHHhh
Confidence 35899999999999999999999989999999999632 223467889999999886 899999999976
Q ss_pred cCCCCCCceEeEEEEecCCCChhhhhccCCCccccccCCHHHHHHHHHHHHHHHHHHhhcCCCCceeeCCCCCCeeec--
Q 040925 599 STDFKGTDFKAFVFEYMENGSLKDWLHQSDDQVEVCKLSLIQRVNIAIDVASAMEYLHHHCQPPMVHGDLKPSNVLLD-- 676 (833)
Q Consensus 599 ~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~gL~~LH~~~~~~ivH~Dlkp~NIll~-- 676 (833)
... ......++||||+ +++|.+++...... .+++..++.++.||+.||+|||+++ ||+||||||+||+++
T Consensus 97 ~~~-~~~~~~~lv~e~~-~~~L~~~~~~~~~~----~~~~~~~~~i~~qi~~aL~~lH~~~--~ivH~Dikp~NIll~~~ 168 (373)
T 1q8y_A 97 HKG-PNGVHVVMVFEVL-GENLLALIKKYEHR----GIPLIYVKQISKQLLLGLDYMHRRC--GIIHTDIKPENVLMEIV 168 (373)
T ss_dssp EEE-TTEEEEEEEECCC-CEEHHHHHHHTTTS----CCCHHHHHHHHHHHHHHHHHHHHTT--CEECSCCSGGGEEEEEE
T ss_pred ccC-CCCceEEEEEecC-CCCHHHHHHHhhcc----CCcHHHHHHHHHHHHHHHHHHHhcC--CEEecCCChHHeEEecc
Confidence 542 2234789999999 78999999875432 5899999999999999999999953 899999999999994
Q ss_pred ----CCCcEEEcccccccccCcccccccccCCCccccccccccccCccccCCCCCCcccccccCCcCCCccccCCccHHH
Q 040925 677 ----HDMVAHVCDFGLAKFLSDHQLDTAVKTPSSSIGLKGTVGYVAPEYGMGSEASMTGDIFTGRRPIDAVFNEGHSLHE 752 (833)
Q Consensus 677 ----~~~~~kL~DfG~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~s~~~~~~~~~~~g~~l~~ 752 (833)
..+.+||+|||+++...... ....||+.|+|||++.+..++.++|||| +|+++++
T Consensus 169 ~~~~~~~~~kl~Dfg~a~~~~~~~-----------~~~~~t~~y~aPE~~~~~~~~~~~Di~s----------lG~il~e 227 (373)
T 1q8y_A 169 DSPENLIQIKIADLGNACWYDEHY-----------TNSIQTREYRSPEVLLGAPWGCGADIWS----------TACLIFE 227 (373)
T ss_dssp ETTTTEEEEEECCCTTCEETTBCC-----------CSCCSCGGGCCHHHHHTCCCCTHHHHHH----------HHHHHHH
T ss_pred CCCcCcceEEEcccccccccCCCC-----------CCCCCCccccCcHHHhCCCCCchHhHHH----------HHHHHHH
Confidence 44589999999998654321 1236899999999999999999999999 7888889
Q ss_pred HHHHhCCCcccccccc----cchhhhcc---c----------------------------c----chhhhhhhhchHHHH
Q 040925 753 FAKTALPEKVMEIVDP----SLLMEVMT---N----------------------------N----SMIQEDKRVKTEECL 793 (833)
Q Consensus 753 ~~~~~~p~~~~~~~~~----~~~~~~~~---~----------------------------~----~~~~~~~~~~~~~~~ 793 (833)
++++..|+........ ........ . . ..........+..++
T Consensus 228 l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (373)
T 1q8y_A 228 LITGDFLFEPDEGHSYTKDDDHIAQIIELLGELPSYLLRNGKYTRTFFNSRGLLRNISKLKFWPLEDVLTEKYKFSKDEA 307 (373)
T ss_dssp HHHSSCCC---------CHHHHHHHHHHHHCSCCHHHHHHCTTHHHHBCC--CBSSCCCCCBCCHHHHHHHTTCCCHHHH
T ss_pred HHhCCCCCCCCcccccCChHHHHHHHHHhcCCCCHHHHhccchhhhhcCCcchhcccccccccchhhhhhhcccCCcchH
Confidence 9988888752211000 00000000 0 0 000000112235678
Q ss_pred HHHHHHhhccCCCCCCCCCCHHHHHHH
Q 040925 794 NAIIRTGVLCSMESPFERMDMRDVVAK 820 (833)
Q Consensus 794 ~~l~~li~~cl~~dP~~RPt~~eil~~ 820 (833)
+.+.+++.+||+.||++|||++|+++.
T Consensus 308 ~~~~~li~~~L~~dP~~Rpt~~ell~h 334 (373)
T 1q8y_A 308 KEISDFLSPMLQLDPRKRADAGGLVNH 334 (373)
T ss_dssp HHHHHHHGGGGCSSTTTCBCHHHHHTC
T ss_pred HHHHHHHHHHhccCccccCCHHHHhhC
Confidence 899999999999999999999999874
No 281
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=100.00 E-value=1.2e-33 Score=303.20 Aligned_cols=288 Identities=21% Similarity=0.212 Sum_probs=155.2
Q ss_pred CCcEEECCCcccccccCchhhcCCCCccEEEccCCcceeeCCccccCCCCCcEEEcccCccccccCcCccCCCcCceEec
Q 040925 72 SLELIQLALNRFSGNLPFDIVVNLPNLKALAIGGNNFFGSIPYSLSNASNLELLDLSVNQFKGNVSIDFSSLKNLLWLNL 151 (833)
Q Consensus 72 ~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L 151 (833)
+|+.+++++|.++ .+|..++ ++|++|+|++|.+++..|..|.++++|++|+|++|+|+++.+..|.++++|++|+|
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~~---~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 109 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEIS---PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI 109 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCCC---TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred cCCEEECCCCCcc-ccCCCCC---CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence 4555555555554 5554332 45555666666655555555666666666666666666555555555666666666
Q ss_pred ccccCCCCCCCCcccccccCCCCCCCEEEccCCcCcccCChhHhhhcccccEEEccCccccccCChhhhcCCCCCeEecc
Q 040925 152 EQNNLGTGTATDLDFVTFLTNCSSLKALSLADNQFGGELPHSIANLSSTVINFGIGRNQISGTIPPGIRNLVNLIGFGAE 231 (833)
Q Consensus 152 ~~N~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~ 231 (833)
++|.++.++.. +. ++|++|++++|+++ +..+..|.++++|+.|+++
T Consensus 110 ~~n~l~~l~~~-------~~--~~L~~L~l~~n~i~-------------------------~~~~~~~~~l~~L~~L~l~ 155 (332)
T 2ft3_A 110 SKNHLVEIPPN-------LP--SSLVELRIHDNRIR-------------------------KVPKGVFSGLRNMNCIEMG 155 (332)
T ss_dssp CSSCCCSCCSS-------CC--TTCCEEECCSSCCC-------------------------CCCSGGGSSCSSCCEEECC
T ss_pred CCCcCCccCcc-------cc--ccCCEEECCCCccC-------------------------ccCHhHhCCCccCCEEECC
Confidence 65555544331 11 44555555555544 1223344555555556666
Q ss_pred CCccc--ccCCccccCCCCCCEEEcccccCcccCCccccCCCCCCeEEeecccccCCCCCCCCCCCccceeecCCceecc
Q 040925 232 ENQLH--GTIPDAIGELKNLQKLCLFRNFLQGRIPSGLGNLTKLANLELSSNSLQGNIPSSLGNCQNLMSFTASQNKLTG 309 (833)
Q Consensus 232 ~N~l~--~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~ 309 (833)
+|.++ +..+..|..+ +|++|++++|.+++ +|..+. ++|++|+|++|++++..+..|..+++|+.|++++|++++
T Consensus 156 ~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~ 231 (332)
T 2ft3_A 156 GNPLENSGFEPGAFDGL-KLNYLRISEAKLTG-IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRM 231 (332)
T ss_dssp SCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS-CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCC
T ss_pred CCccccCCCCcccccCC-ccCEEECcCCCCCc-cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCc
Confidence 55553 2455555555 66666666666663 343333 566666666666665555666666666655555555542
Q ss_pred cCCcccccccccceeeecCCCccCCCCCcccccCCCcCEEeccCCcCCCCCCccccCCCCCcEEeecCCccccccCcccc
Q 040925 310 ALPHQLLSITTLSLYLDLSNNLLNGSLPLQVGHLKNLVILDISSNQFSGVIPGTLSTCVCLEYLDISSNSFHGVIPLSLS 389 (833)
Q Consensus 310 ~~p~~~~~~~~ll~~L~ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 389 (833)
..+..|..+++|++|++++|+++ .+|..+..+++|+.|++++|++++..+..|.
T Consensus 232 -------------------------~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~ 285 (332)
T 2ft3_A 232 -------------------------IENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFC 285 (332)
T ss_dssp -------------------------CCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSS
T ss_pred -------------------------CChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHcc
Confidence 33334444555555555555554 3344455555555555555555544444443
Q ss_pred C------CCCCCeEEccCcccC--CCchhhhcCCCCCceEECccCc
Q 040925 390 F------LKSIKELNVSSNNLS--GQIPEFLKNLSVLEFLSLSYNH 427 (833)
Q Consensus 390 ~------l~~L~~L~l~~N~l~--~~~p~~l~~l~~L~~L~l~~N~ 427 (833)
. ...|+.|++++|++. +..|..|..++.|+.+++++|.
T Consensus 286 ~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 286 PVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp CSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred ccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 2 245566666666665 4556666666666666666653
No 282
>2eu9_A Dual specificity protein kinase CLK3; kinase domain, transferase; 1.53A {Homo sapiens} PDB: 2wu6_A* 2wu7_A* 3raw_A* 2exe_A 3nr9_A*
Probab=100.00 E-value=3.2e-35 Score=319.25 Aligned_cols=256 Identities=19% Similarity=0.250 Sum_probs=195.2
Q ss_pred hcCCccCceeccCcceEEEEEEECCCc-eEEEEEEeeccCCcchhHHHHHHHHHhhcCCCc------cceEeeEeecCCC
Q 040925 530 TGEFSSSNMIGQGSFGYVYKGTLGEDE-MIVAVKVINLKYKGASRSFVAECEALRNIRHRN------LIKIITICSSTDF 602 (833)
Q Consensus 530 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~-~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~n------iv~~~~~~~~~~~ 602 (833)
.++|++.+.||+|+||.||+|.+..++ +.||+|+++.. ....+.+.+|++++++++|++ ++.+++++....
T Consensus 18 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~-~~~~~~~~~E~~~l~~l~~~~~~~~~~~~~~~~~~~~~~- 95 (355)
T 2eu9_A 18 QERYEIVGNLGEGTFGKVVECLDHARGKSQVALKIIRNV-GKYREAARLEINVLKKIKEKDKENKFLCVLMSDWFNFHG- 95 (355)
T ss_dssp TTTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEECSC-HHHHHHHHHHHHHHHHHHHHCTTSCSCBCCEEEEEEETT-
T ss_pred cccEEEEEEeeccCCeEEEEEEecCCCceEEEEEEEccc-ccchhHHHHHHHHHHHHhhcCCCCceeEEEeeeeeeeCC-
Confidence 368999999999999999999997666 79999999632 234567889999999997665 889988876554
Q ss_pred CCCceEeEEEEecCCCChhhhhccCCCccccccCCHHHHHHHHHHHHHHHHHHhhcCCCCceeeCCCCCCeee-------
Q 040925 603 KGTDFKAFVFEYMENGSLKDWLHQSDDQVEVCKLSLIQRVNIAIDVASAMEYLHHHCQPPMVHGDLKPSNVLL------- 675 (833)
Q Consensus 603 ~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~gL~~LH~~~~~~ivH~Dlkp~NIll------- 675 (833)
..++||||+ ++++.+++...... .+++.+++.++.|++.||+|||+. +|+||||||+||++
T Consensus 96 ----~~~lv~e~~-~~~l~~~l~~~~~~----~~~~~~~~~i~~qi~~~L~~lH~~---~ivH~Dlkp~NIll~~~~~~~ 163 (355)
T 2eu9_A 96 ----HMCIAFELL-GKNTFEFLKENNFQ----PYPLPHVRHMAYQLCHALRFLHEN---QLTHTDLKPENILFVNSEFET 163 (355)
T ss_dssp ----EEEEEEECC-CCBHHHHHHHTTTC----CCCHHHHHHHHHHHHHHHHHHHTT---TEECCCCCGGGEEESCCCEEE
T ss_pred ----eEEEEEecc-CCChHHHHHhccCC----CCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEEEecccccc
Confidence 899999999 56787777665422 689999999999999999999999 99999999999999
Q ss_pred ------------cCCCcEEEcccccccccCcccccccccCCCccccccccccccCccccCCCCCCcccccccCCcCCCcc
Q 040925 676 ------------DHDMVAHVCDFGLAKFLSDHQLDTAVKTPSSSIGLKGTVGYVAPEYGMGSEASMTGDIFTGRRPIDAV 743 (833)
Q Consensus 676 ------------~~~~~~kL~DfG~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~s~~~~~~~~ 743 (833)
+.++.+||+|||+++...... ....||+.|+|||++.+..++.++||||
T Consensus 164 ~~~~~~~~~~~~~~~~~~kl~Dfg~~~~~~~~~-----------~~~~gt~~y~aPE~~~~~~~~~~~Di~s-------- 224 (355)
T 2eu9_A 164 LYNEHKSCEEKSVKNTSIRVADFGSATFDHEHH-----------TTIVATRHYRPPEVILELGWAQPCDVWS-------- 224 (355)
T ss_dssp EECCC-CCCEEEESCCCEEECCCTTCEETTSCC-----------CSSCSCGGGCCHHHHTTCCCCTHHHHHH--------
T ss_pred cccccccccccccCCCcEEEeecCccccccccc-----------cCCcCCCcccCCeeeecCCCCCccchHH--------
Confidence 567899999999997643321 2346999999999999999999999999
Q ss_pred ccCCccHHHHHHHhCCCcccccccccchhhhccccc-----------------------------------hhhhhhhhc
Q 040925 744 FNEGHSLHEFAKTALPEKVMEIVDPSLLMEVMTNNS-----------------------------------MIQEDKRVK 788 (833)
Q Consensus 744 ~~~g~~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~~-----------------------------------~~~~~~~~~ 788 (833)
.|+++++++++..|+......+............ .........
T Consensus 225 --lG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (355)
T 2eu9_A 225 --IGCILFEYYRGFTLFQTHENREHLVMMEKILGPIPSHMIHRTRKQKYFYKGGLVWDENSSDGRYVKENCKPLKSYMLQ 302 (355)
T ss_dssp --HHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCHHHHHHCSCGGGEETTEECCCTTSHHHHHHHHHCCCGGGGCSC
T ss_pred --HHHHHHHHHhCCCCCCCCCHHHHHHHHHHHcCCCcHHHhhhccchhhhcccccccccccchhccccccCCcccccccc
Confidence 7888888888888875322110000000000000 000000011
Q ss_pred hHHHHHHHHHHhhccCCCCCCCCCCHHHHHHH
Q 040925 789 TEECLNAIIRTGVLCSMESPFERMDMRDVVAK 820 (833)
Q Consensus 789 ~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~ 820 (833)
....+..+.+++.+||..||++|||++|+++.
T Consensus 303 ~~~~~~~l~~li~~~L~~dP~~Rpt~~e~l~h 334 (355)
T 2eu9_A 303 DSLEHVQLFDLMRRMLEFDPAQRITLAEALLH 334 (355)
T ss_dssp CSHHHHHHHHHHHHHTCSSTTTSCCHHHHTTS
T ss_pred cchhHHHHHHHHHHHhcCChhhCcCHHHHhcC
Confidence 22345688999999999999999999999864
No 283
>3aln_A Dual specificity mitogen-activated protein kinase; protein AMP-PNP complex, transferase; HET: ANP; 2.30A {Homo sapiens} PDB: 3alo_A*
Probab=100.00 E-value=2.3e-35 Score=316.20 Aligned_cols=260 Identities=20% Similarity=0.263 Sum_probs=177.5
Q ss_pred hcCCccCceeccCcceEEEEEEECCCceEEEEEEeeccCC-cchhHHHHHHH-HHhhcCCCccceEeeEeecCCCCCCce
Q 040925 530 TGEFSSSNMIGQGSFGYVYKGTLGEDEMIVAVKVINLKYK-GASRSFVAECE-ALRNIRHRNLIKIITICSSTDFKGTDF 607 (833)
Q Consensus 530 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~-~~~~~~~~E~~-~l~~l~h~niv~~~~~~~~~~~~~~~~ 607 (833)
.++|++.+.||+|+||.||+|.+..+++.||||+++.... .....+..|+. +++.++||||+++++++...+ .
T Consensus 21 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~~~~~~~h~niv~~~~~~~~~~-----~ 95 (327)
T 3aln_A 21 AEDLKDLGEIGRGAYGSVNKMVHKPSGQIMAVKRIRSTVDEKEQKQLLMDLDVVMRSSDCPYIVQFYGALFREG-----D 95 (327)
T ss_dssp SCSEEC-CEEEECSSEEEEEEEETTTTEEEEEEEEECCCCHHHHHHHHHHHHHHHSSCCCTTBCCEEEEEECSS-----E
T ss_pred HHHhhehheeccCCCEEEEEEEEcCCCCEEEEEEeecccCchHHHHHHHHHHHHHHcCCCCcEeeeeeEEEeCC-----c
Confidence 3689999999999999999999998999999999975432 22345556666 677789999999999986654 8
Q ss_pred EeEEEEecCCCChhhhhccCCCccccccCCHHHHHHHHHHHHHHHHHHhhcCCCCceeeCCCCCCeeecCCCcEEEcccc
Q 040925 608 KAFVFEYMENGSLKDWLHQSDDQVEVCKLSLIQRVNIAIDVASAMEYLHHHCQPPMVHGDLKPSNVLLDHDMVAHVCDFG 687 (833)
Q Consensus 608 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~gL~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kL~DfG 687 (833)
.++||||+++ +|.+++...... ....+++..+..++.|++.||.|||+.. +|+||||||+||+++.++.+||+|||
T Consensus 96 ~~lv~e~~~~-~l~~~~~~~~~~-~~~~~~~~~~~~i~~~i~~~l~~lH~~~--~ivH~dlkp~NIll~~~~~~kl~Dfg 171 (327)
T 3aln_A 96 CWICMELMST-SFDKFYKYVYSV-LDDVIPEEILGKITLATVKALNHLKENL--KIIHRDIKPSNILLDRSGNIKLCDFG 171 (327)
T ss_dssp EEEEECCCSE-EHHHHHHHHHHT-TCCCCCHHHHHHHHHHHHHHHHHHHHHH--SCCCSCCCGGGEEEETTTEEEECCCS
T ss_pred eEEEEeecCC-ChHHHHHHHHhh-hcccCcHHHHHHHHHHHHHHHHHHhccC--CEeECCCCHHHEEEcCCCCEEEccCC
Confidence 8999999985 888887631100 0116899999999999999999999853 89999999999999999999999999
Q ss_pred cccccCcccccccccCCCccccccccccccCcccc----CCCCCCcccccccCCcCCCccccCCccHHHHHHHhCCCccc
Q 040925 688 LAKFLSDHQLDTAVKTPSSSIGLKGTVGYVAPEYG----MGSEASMTGDIFTGRRPIDAVFNEGHSLHEFAKTALPEKVM 763 (833)
Q Consensus 688 ~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~----~~~~~~~~~Di~s~~~~~~~~~~~g~~l~~~~~~~~p~~~~ 763 (833)
+++....... .....||+.|+|||++ .+..++.++|||| +|+++++++++..|+...
T Consensus 172 ~~~~~~~~~~---------~~~~~gt~~y~aPE~~~~~~~~~~~~~~~Di~s----------lG~il~~l~~g~~pf~~~ 232 (327)
T 3aln_A 172 ISGQLVDSIA---------KTRDAGCRPYMAPERIDPSASRQGYDVRSDVWS----------LGITLYELATGRFPYPKW 232 (327)
T ss_dssp SSCC---------------------------------------CCSHHHHHH----------HHHHHHHHHHSCCCSSCC
T ss_pred Cceecccccc---------cccCCCCccccCceeeccccCcCCCCchhhHHH----------HHHHHHHHHHCCCCCCCc
Confidence 9986644221 1123599999999998 4667899999999 888999999998887532
Q ss_pred ccccccchhhhccccchhhhhhhhchHHHHHHHHHHhhccCCCCCCCCCCHHHHHHH
Q 040925 764 EIVDPSLLMEVMTNNSMIQEDKRVKTEECLNAIIRTGVLCSMESPFERMDMRDVVAK 820 (833)
Q Consensus 764 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~ 820 (833)
....... ......... .........+++.+.+++.+||..||++|||++|+++.
T Consensus 233 ~~~~~~~-~~~~~~~~~--~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~h 286 (327)
T 3aln_A 233 NSVFDQL-TQVVKGDPP--QLSNSEEREFSPSFINFVNLCLTKDESKRPKYKELLKH 286 (327)
T ss_dssp --------CCCCCSCCC--CCCCCSSCCCCHHHHHHHHHHTCSSGGGSCCHHHHTTS
T ss_pred chHHHHH-HHHhcCCCC--CCCCcccccCCHHHHHHHHHHhhCChhhCcCHHHHHhC
Confidence 2111111 111111000 00000112245678999999999999999999999764
No 284
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=100.00 E-value=1.6e-33 Score=302.11 Aligned_cols=291 Identities=20% Similarity=0.222 Sum_probs=161.0
Q ss_pred CCCEEEcCCCcccccCCccccCCCCCcEEECCCcccccccCchhhcCCCCccEEEccCCcceeeCCccccCCCCCcEEEc
Q 040925 48 NLVSLNVAENKFSGMFPRSICNISSLELIQLALNRFSGNLPFDIVVNLPNLKALAIGGNNFFGSIPYSLSNASNLELLDL 127 (833)
Q Consensus 48 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 127 (833)
++++++++++.++ .+|..+. ++|+.|+|++|+++ .++...|.++++|++|+|++|.+++..|..|.++++|++|+|
T Consensus 32 ~l~~l~~~~~~l~-~lp~~~~--~~l~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (330)
T 1xku_A 32 HLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL 107 (330)
T ss_dssp ETTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCC-CBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred CCeEEEecCCCcc-ccCccCC--CCCeEEECCCCcCC-EeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEEC
Confidence 5666666666665 3444443 45666666666665 455555556666666666666665555555666666666666
Q ss_pred ccCccccccCcCccCCCcCceEecccccCCCCCCCCcccccccCCCCCCCEEEccCCcCcccCChhHhhhcccccEEEcc
Q 040925 128 SVNQFKGNVSIDFSSLKNLLWLNLEQNNLGTGTATDLDFVTFLTNCSSLKALSLADNQFGGELPHSIANLSSTVINFGIG 207 (833)
Q Consensus 128 ~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~l~~L~l~ 207 (833)
++|+|+.++...+ ++|++|++++|.++.++. ..+.++++|++|++++|+++.
T Consensus 108 s~n~l~~l~~~~~---~~L~~L~l~~n~l~~~~~------~~~~~l~~L~~L~l~~n~l~~------------------- 159 (330)
T 1xku_A 108 SKNQLKELPEKMP---KTLQELRVHENEITKVRK------SVFNGLNQMIVVELGTNPLKS------------------- 159 (330)
T ss_dssp CSSCCSBCCSSCC---TTCCEEECCSSCCCBBCH------HHHTTCTTCCEEECCSSCCCG-------------------
T ss_pred CCCcCCccChhhc---ccccEEECCCCcccccCH------hHhcCCccccEEECCCCcCCc-------------------
Confidence 6666554443322 445555555555543321 224444555555555554431
Q ss_pred CccccccCChhhhcCCCCCeEeccCCcccccCCccccCCCCCCEEEcccccCcccCCccccCCCCCCeEEeecccccCCC
Q 040925 208 RNQISGTIPPGIRNLVNLIGFGAEENQLHGTIPDAIGELKNLQKLCLFRNFLQGRIPSGLGNLTKLANLELSSNSLQGNI 287 (833)
Q Consensus 208 ~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 287 (833)
.+..+..|.++++|+.|++++|+++. +|..+. ++|++|+|++|.+++..+..|.++++|++|+|++|++++..
T Consensus 160 ----~~~~~~~~~~l~~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 232 (330)
T 1xku_A 160 ----SGIENGAFQGMKKLSYIRIADTNITT-IPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVD 232 (330)
T ss_dssp ----GGBCTTGGGGCTTCCEEECCSSCCCS-CCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEEC
T ss_pred ----cCcChhhccCCCCcCEEECCCCcccc-CCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeC
Confidence 01334455555555555555555553 222222 45555555555555555555555555555555555555444
Q ss_pred CCCCCCCCccceeecCCceecccCCcccccccccceeeecCCCccCCCCCcccccCCCcCEEeccCCcCCCCCCccccCC
Q 040925 288 PSSLGNCQNLMSFTASQNKLTGALPHQLLSITTLSLYLDLSNNLLNGSLPLQVGHLKNLVILDISSNQFSGVIPGTLSTC 367 (833)
Q Consensus 288 ~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~ll~~L~ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l 367 (833)
+..|..+++|+.|++++| .++ .+|..+..+++|++|++++|+|+++.+..|...
T Consensus 233 ~~~~~~l~~L~~L~L~~N-------------------------~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~ 286 (330)
T 1xku_A 233 NGSLANTPHLRELHLNNN-------------------------KLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPP 286 (330)
T ss_dssp TTTGGGSTTCCEEECCSS-------------------------CCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCS
T ss_pred hhhccCCCCCCEEECCCC-------------------------cCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCc
Confidence 445555555554444444 444 445556666777777777777776666666433
Q ss_pred ------CCCcEEeecCCcccc--ccCccccCCCCCCeEEccCcc
Q 040925 368 ------VCLEYLDISSNSFHG--VIPLSLSFLKSIKELNVSSNN 403 (833)
Q Consensus 368 ------~~L~~L~Ls~N~l~~--~~~~~~~~l~~L~~L~l~~N~ 403 (833)
..|+.|++++|.+.. +.|..|..+..++.++|++|+
T Consensus 287 ~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 287 GYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp SCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred ccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 567777777777653 556677777777788877774
No 285
>3rgf_A Cyclin-dependent kinase 8; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}
Probab=100.00 E-value=1.1e-35 Score=328.17 Aligned_cols=207 Identities=24% Similarity=0.317 Sum_probs=154.2
Q ss_pred cCCcc-CceeccCcceEEEEEEEC--CCceEEEEEEeeccCCcchhHHHHHHHHHhhcCCCccceEeeEeecCCCCCCce
Q 040925 531 GEFSS-SNMIGQGSFGYVYKGTLG--EDEMIVAVKVINLKYKGASRSFVAECEALRNIRHRNLIKIITICSSTDFKGTDF 607 (833)
Q Consensus 531 ~~y~~-~~~lg~G~~g~Vy~~~~~--~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~ 607 (833)
+.|++ .++||+|+||.||+|++. .+++.||||+++.. .....+.+|++++++++||||+++++++.... ...
T Consensus 20 ~~y~~~g~~lG~G~~g~Vy~~~~~~~~~~~~vaiK~~~~~--~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~---~~~ 94 (405)
T 3rgf_A 20 DLFEYEGCKVGRGTYGHVYKAKRKDGKDDKDYALKQIEGT--GISMSACREIALLRELKHPNVISLQKVFLSHA---DRK 94 (405)
T ss_dssp HHEECSSCCCC-----EEEEEEESSSSCCCCEEEEECSSS--SCCHHHHHHHHHHHHCCCTTBCCCCEEEEETT---TTE
T ss_pred hhhhhcCcEeeecCCeEEEEEEEccCCCCeEEEEEEECCC--CCCHHHHHHHHHHHhcCCCCeeeEeeEEecCC---CCe
Confidence 34666 458999999999999976 46889999999633 33457889999999999999999999985422 457
Q ss_pred EeEEEEecCCCChhhhhccCCCc---cccccCCHHHHHHHHHHHHHHHHHHhhcCCCCceeeCCCCCCeee----cCCCc
Q 040925 608 KAFVFEYMENGSLKDWLHQSDDQ---VEVCKLSLIQRVNIAIDVASAMEYLHHHCQPPMVHGDLKPSNVLL----DHDMV 680 (833)
Q Consensus 608 ~~lv~e~~~~gsL~~~l~~~~~~---~~~~~l~~~~~~~i~~qi~~gL~~LH~~~~~~ivH~Dlkp~NIll----~~~~~ 680 (833)
.++||||++ |+|.+++...... .....+++..++.++.||+.||+|||+. +|+||||||+||++ +.++.
T Consensus 95 ~~lv~e~~~-~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~LH~~---~ivH~Dlkp~NIll~~~~~~~~~ 170 (405)
T 3rgf_A 95 VWLLFDYAE-HDLWHIIKFHRASKANKKPVQLPRGMVKSLLYQILDGIHYLHAN---WVLHRDLKPANILVMGEGPERGR 170 (405)
T ss_dssp EEEEEECCS-EEHHHHHHHHHHHC-------CCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECCSSTTTTC
T ss_pred EEEEEeCCC-CCHHHHHHHhccccccccccCCCHHHHHHHHHHHHHHHHHHHhC---CEeCCCcCHHHeEEecCCCCCCc
Confidence 999999997 5888888643211 1112489999999999999999999999 99999999999999 67789
Q ss_pred EEEcccccccccCcccccccccCCCccccccccccccCccccCCC-CCCcccccccCCcCCCccccCCccHHHHHHHhCC
Q 040925 681 AHVCDFGLAKFLSDHQLDTAVKTPSSSIGLKGTVGYVAPEYGMGS-EASMTGDIFTGRRPIDAVFNEGHSLHEFAKTALP 759 (833)
Q Consensus 681 ~kL~DfG~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~Di~s~~~~~~~~~~~g~~l~~~~~~~~p 759 (833)
+||+|||+|+........ ........||+.|+|||++.+. .++.++|||| .|+++++++++..|
T Consensus 171 ~kl~Dfg~a~~~~~~~~~-----~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwS----------lG~il~ell~g~~p 235 (405)
T 3rgf_A 171 VKIADMGFARLFNSPLKP-----LADLDPVVVTFWYRAPELLLGARHYTKAIDIWA----------IGCIFAELLTSEPI 235 (405)
T ss_dssp EEECCTTCCC---------------------CCCTTCCHHHHTTCCSCCHHHHHHH----------HHHHHHHHHHSSCT
T ss_pred EEEEECCCceecCCCCcc-----cccCCCceecCcccCchhhcCCCcccchhhhHH----------HHHHHHHHHhCCCC
Confidence 999999999876542211 1122345799999999998874 5899999999 78888888888887
Q ss_pred Cc
Q 040925 760 EK 761 (833)
Q Consensus 760 ~~ 761 (833)
+.
T Consensus 236 f~ 237 (405)
T 3rgf_A 236 FH 237 (405)
T ss_dssp TC
T ss_pred CC
Confidence 74
No 286
>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A*
Probab=100.00 E-value=9.4e-36 Score=317.12 Aligned_cols=261 Identities=21% Similarity=0.301 Sum_probs=194.4
Q ss_pred cchHHHHHHhcCCccCceeccCcceEEEEEEECCCceEEEEEEeeccCC--cchhHHHHHHHHHhhcC--CCccceEeeE
Q 040925 521 VSYAELSKATGEFSSSNMIGQGSFGYVYKGTLGEDEMIVAVKVINLKYK--GASRSFVAECEALRNIR--HRNLIKIITI 596 (833)
Q Consensus 521 ~~~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~--~~~~~~~~E~~~l~~l~--h~niv~~~~~ 596 (833)
+.+..+....++|++.+.||+|+||.||+|.+. +++.||||++..... ...+.+.+|++++++++ ||||++++++
T Consensus 18 ~~~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~iv~~~~~ 96 (313)
T 3cek_A 18 LYFQSMSVKGRIYSILKQIGSGGSSKVFQVLNE-KKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDY 96 (313)
T ss_dssp --CCEEEETTEEEEEEEEEECCSSEEEEEEECT-TCCEEEEEEEECSSCCHHHHHHHHHHHHHHHHHGGGCTTBCCEEEE
T ss_pred CCeeeeeeccceEEEEEEecCCCCEEEEEEEcC-CCcEEEEEEeccccccccchHHHHHHHHHHHhccccCCceEEEEEE
Confidence 334444455678999999999999999999986 588999999975432 23467899999999997 5999999999
Q ss_pred eecCCCCCCceEeEEEEecCCCChhhhhccCCCccccccCCHHHHHHHHHHHHHHHHHHhhcCCCCceeeCCCCCCeeec
Q 040925 597 CSSTDFKGTDFKAFVFEYMENGSLKDWLHQSDDQVEVCKLSLIQRVNIAIDVASAMEYLHHHCQPPMVHGDLKPSNVLLD 676 (833)
Q Consensus 597 ~~~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~gL~~LH~~~~~~ivH~Dlkp~NIll~ 676 (833)
+.... ..++||| +.+++|.+++.... .+++.+++.++.|++.||.|||+. +|+||||||+||+++
T Consensus 97 ~~~~~-----~~~lv~e-~~~~~L~~~l~~~~------~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~dlkp~NIl~~ 161 (313)
T 3cek_A 97 EITDQ-----YIYMVME-CGNIDLNSWLKKKK------SIDPWERKSYWKNMLEAVHTIHQH---GIVHSDLKPANFLIV 161 (313)
T ss_dssp EECSS-----EEEEEEC-CCSEEHHHHHHHCS------SCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEEE
T ss_pred eecCC-----EEEEEEe-cCCCcHHHHHHhcC------CCCHHHHHHHHHHHHHHHHHHHHC---CceecCCCcccEEEE
Confidence 76655 8999999 55789999998754 689999999999999999999999 999999999999996
Q ss_pred CCCcEEEcccccccccCcccccccccCCCccccccccccccCccccCC-----------CCCCcccccccCCcCCCcccc
Q 040925 677 HDMVAHVCDFGLAKFLSDHQLDTAVKTPSSSIGLKGTVGYVAPEYGMG-----------SEASMTGDIFTGRRPIDAVFN 745 (833)
Q Consensus 677 ~~~~~kL~DfG~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-----------~~~~~~~Di~s~~~~~~~~~~ 745 (833)
++.+||+|||+++........ .......||+.|+|||++.+ ..++.++||||
T Consensus 162 -~~~~kL~Dfg~~~~~~~~~~~------~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~~~~Di~s---------- 224 (313)
T 3cek_A 162 -DGMLKLIDFGIANQMQPDTTS------VVKDSQVGTVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWS---------- 224 (313)
T ss_dssp -TTEEEECCCSSSCC--------------------CCGGGCCHHHHTTCC----------CCCHHHHHHH----------
T ss_pred -CCeEEEeeccccccccCcccc------ccccCCCCCCCcCCHHHHhhcccccccccccccCCchHHHHH----------
Confidence 489999999999876543211 11123469999999999865 46888999999
Q ss_pred CCccHHHHHHHhCCCcccccccccchhhhccccchhhhhhhhchHHHHHHHHHHhhccCCCCCCCCCCHHHHHHH
Q 040925 746 EGHSLHEFAKTALPEKVMEIVDPSLLMEVMTNNSMIQEDKRVKTEECLNAIIRTGVLCSMESPFERMDMRDVVAK 820 (833)
Q Consensus 746 ~g~~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~ 820 (833)
+|+++++++++..|+.......... ........ ....+...+..+.+++.+||+.||++|||++|+++.
T Consensus 225 lG~il~el~~g~~pf~~~~~~~~~~-~~~~~~~~-----~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~h 293 (313)
T 3cek_A 225 LGCILYYMTYGKTPFQQIINQISKL-HAIIDPNH-----EIEFPDIPEKDLQDVLKCCLKRDPKQRISIPELLAH 293 (313)
T ss_dssp HHHHHHHHHHSSCTTTTCCSHHHHH-HHHHCTTS-----CCCCCCCSCHHHHHHHHHHTCSSTTTSCCHHHHHTS
T ss_pred HHHHHHHHHhCCCchhhHHHHHHHH-HHHHhccc-----ccCCcccchHHHHHHHHHHccCCcccCcCHHHHhcC
Confidence 8888999999998875211000000 00000000 000111124568899999999999999999999875
No 287
>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*
Probab=100.00 E-value=2e-35 Score=335.94 Aligned_cols=272 Identities=22% Similarity=0.292 Sum_probs=200.2
Q ss_pred HhcCCccCceeccCcceEEEEEEECCCceEEEEEEeeccC-CcchhHHHHHHHHHhhcCCCccceEeeEeecCC-CCCCc
Q 040925 529 ATGEFSSSNMIGQGSFGYVYKGTLGEDEMIVAVKVINLKY-KGASRSFVAECEALRNIRHRNLIKIITICSSTD-FKGTD 606 (833)
Q Consensus 529 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~-~~~~~ 606 (833)
..++|++.+.||+|+||.||+|.+..+++.||||+++... ....+.+.+|++++++++||||+++++++.... +....
T Consensus 12 ~~grY~i~~~LG~G~fG~Vyla~~~~tg~~VAVKvi~~~~~~~~~~~~~~Ei~iL~~L~HpnIV~l~~v~~~~~~~~~~~ 91 (676)
T 3qa8_A 12 TCGPWEMKERLGTGGFGYVLRWIHQDTGEQVAIKQCRQELSPKNRERWCLEIQIMKKLNHPNVVSAREVPDGLQKLAPND 91 (676)
T ss_dssp -----CCCCCCCBCSSSBCCCCCCTTTTCCEEECCCCSCCCHHHHHHHHHHHHHHHHCCBTTBCCEEECCTTTCCCCTTS
T ss_pred CCCCeEEEEEEeeCCCeEEEEEEECCCCcEEEEEEecccCCHHHHHHHHHHHHHHHhCCCCCCCceeeeecccccccCCC
Confidence 3478999999999999999999999899999999987542 233467899999999999999999999875522 22355
Q ss_pred eEeEEEEecCCCChhhhhccCCCccccccCCHHHHHHHHHHHHHHHHHHhhcCCCCceeeCCCCCCeeecCCCc---EEE
Q 040925 607 FKAFVFEYMENGSLKDWLHQSDDQVEVCKLSLIQRVNIAIDVASAMEYLHHHCQPPMVHGDLKPSNVLLDHDMV---AHV 683 (833)
Q Consensus 607 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~gL~~LH~~~~~~ivH~Dlkp~NIll~~~~~---~kL 683 (833)
..++||||+++|+|.+++...... ..+++..++.++.|++.||+|||+. ||+||||||+||+++.++. +||
T Consensus 92 ~~~LVmEy~~ggsL~~~L~~~~~~---~~lse~~i~~I~~QLl~aL~yLHs~---gIVHrDLKP~NILl~~~g~~~~vKL 165 (676)
T 3qa8_A 92 LPLLAMEYCEGGDLRKYLNQFENC---CGLKEGPIRTLLSDISSALRYLHEN---RIIHRDLKPENIVLQPGPQRLIHKI 165 (676)
T ss_dssp SCCCEEECCSSCBHHHHHHSSSCT---TCCCSSHHHHHHHHHHHHHHHHHHT---TBCCCCCCSTTEEEECCSSSCEEEE
T ss_pred eEEEEEEeCCCCCHHHHHHhcccC---CCCCHHHHHHHHHHHHHHHHHHHHC---CCccCCCCHHHeEeecCCCceeEEE
Confidence 789999999999999999875422 2588999999999999999999999 9999999999999997764 999
Q ss_pred cccccccccCcccccccccCCCccccccccccccCccccCCCCCCcccccccCCcCCCccccCCccHHHHHHHhCCCccc
Q 040925 684 CDFGLAKFLSDHQLDTAVKTPSSSIGLKGTVGYVAPEYGMGSEASMTGDIFTGRRPIDAVFNEGHSLHEFAKTALPEKVM 763 (833)
Q Consensus 684 ~DfG~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~s~~~~~~~~~~~g~~l~~~~~~~~p~~~~ 763 (833)
+|||++........ .....||+.|+|||++.+..++.++|||| .|+++++++++..|+...
T Consensus 166 ~DFG~a~~~~~~~~---------~~~~~gt~~Y~APE~l~~~~~s~ksDIwS----------LGviLyeLltG~~Pf~~~ 226 (676)
T 3qa8_A 166 IDLGYAKELDQGEL---------CTEFVGTLQYLAPELLEQKKYTVTVDYWS----------FGTLAFECITGFRPFLPN 226 (676)
T ss_dssp CSCCCCCBTTSCCC---------CCCCCSCCTTCSSCSSCCSCCSTTHHHHH----------HHHHHHHHHSSCSSCCSS
T ss_pred cccccccccccccc---------cccccCCcccCChHHhccCCCCchhHHHH----------HHHHHHHHHHCCCCCCcc
Confidence 99999987654321 12356999999999999999999999999 788888888888876421
Q ss_pred cc-------c----ccc-chhhhccccc---hhhhhhhhchHHHHHHHHHHhhccCCCCCCCCCCHHHH-----HHHHHH
Q 040925 764 EI-------V----DPS-LLMEVMTNNS---MIQEDKRVKTEECLNAIIRTGVLCSMESPFERMDMRDV-----VAKLCH 823 (833)
Q Consensus 764 ~~-------~----~~~-~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~ei-----l~~L~~ 823 (833)
.. . ... ...+...... ...+........+++.+.+++.+||.+||++|||++|+ .+.+..
T Consensus 227 ~~~~~~~~~i~~~~~~~~~~~~~l~g~~~~~~~lp~p~~l~~~ls~~L~dLI~~mL~~DP~kRPTa~elL~hp~F~~l~~ 306 (676)
T 3qa8_A 227 WQPVQWHGKVREKSNEHIVVYDDLTGAVKFSSVLPTPNHLSGILAGKLERWLQCMLMWHQRQRGTDPQNPNVGCFQALDS 306 (676)
T ss_dssp CHHHHSSTTCC------CCSCCCCSSSCCCCSSSCCSCCCCGGGHHHHHHHHHHHSCSSCC---CCTTCCCCTTHHHHHH
T ss_pred cchhhhhhhhhcccchhhhhhhhhccccccccccCCchhhchhhhHHHHHHHHHHccCCHhhCcCHHHHhcCHHHHHHHH
Confidence 00 0 000 0000000000 00011112233467789999999999999999999884 444544
Q ss_pred hh
Q 040925 824 TR 825 (833)
Q Consensus 824 i~ 825 (833)
+.
T Consensus 307 iL 308 (676)
T 3qa8_A 307 IL 308 (676)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 288
>2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A*
Probab=100.00 E-value=3.2e-35 Score=326.69 Aligned_cols=257 Identities=21% Similarity=0.207 Sum_probs=182.3
Q ss_pred CCccCceeccCcceEEEEEEECCCceEEEEEEeeccCCcchhHHHHHHHHHhhc-CCCccceEeeEeecCCCCCCceEeE
Q 040925 532 EFSSSNMIGQGSFGYVYKGTLGEDEMIVAVKVINLKYKGASRSFVAECEALRNI-RHRNLIKIITICSSTDFKGTDFKAF 610 (833)
Q Consensus 532 ~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~~~~~~~~~~~~~~~~~~l 610 (833)
.|.+.+.||+|+||+||.+... +|+.||||++... ..+.+.+|+++++++ +||||+++++++.... ..++
T Consensus 16 ~~~~~~~LG~G~~g~V~~~~~~-~g~~vAvK~~~~~---~~~~~~~E~~~l~~l~~HpnIv~~~~~~~~~~-----~~~l 86 (434)
T 2rio_A 16 LVVSEKILGYGSSGTVVFQGSF-QGRPVAVKRMLID---FCDIALMEIKLLTESDDHPNVIRYYCSETTDR-----FLYI 86 (434)
T ss_dssp CEEEEEEEEECSTTCEEEEEES-SSSEEEEEEEEGG---GHHHHHHHHHHHHHHTTSTTBCCEEEEEECSS-----EEEE
T ss_pred eeeccCeEeeCCCeEEEEEEEE-CCeEEEEEEEcHH---HHHHHHHHHHHHHhccCCCCcCeEEEEEecCC-----eEEE
Confidence 3555688999999999876544 7899999998643 345678999999987 8999999999976554 8999
Q ss_pred EEEecCCCChhhhhccCCCcccc-ccCCHHHHHHHHHHHHHHHHHHhhcCCCCceeeCCCCCCeeecCC-----------
Q 040925 611 VFEYMENGSLKDWLHQSDDQVEV-CKLSLIQRVNIAIDVASAMEYLHHHCQPPMVHGDLKPSNVLLDHD----------- 678 (833)
Q Consensus 611 v~e~~~~gsL~~~l~~~~~~~~~-~~l~~~~~~~i~~qi~~gL~~LH~~~~~~ivH~Dlkp~NIll~~~----------- 678 (833)
||||++ |+|.+++......... ...++..++.++.||+.||+|||+. +|+||||||+||+++.+
T Consensus 87 v~E~~~-gsL~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivHrDLkp~NILl~~~~~~~~~~~~~~ 162 (434)
T 2rio_A 87 ALELCN-LNLQDLVESKNVSDENLKLQKEYNPISLLRQIASGVAHLHSL---KIIHRDLKPQNILVSTSSRFTADQQTGA 162 (434)
T ss_dssp EECCCS-EEHHHHHHTC------------CCHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEEECCHHHHSCCTTCC
T ss_pred EEecCC-CCHHHHHhccCCCchhhhhccchhHHHHHHHHHHHHHHHHHC---CccccCCChHhEEEecCcccccccccCC
Confidence 999996 6999999876432111 0123445678999999999999999 99999999999999754
Q ss_pred --CcEEEcccccccccCcccccccccCCCccccccccccccCccccCC-------CCCCcccccccCCcCCCccccCCcc
Q 040925 679 --MVAHVCDFGLAKFLSDHQLDTAVKTPSSSIGLKGTVGYVAPEYGMG-------SEASMTGDIFTGRRPIDAVFNEGHS 749 (833)
Q Consensus 679 --~~~kL~DfG~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-------~~~~~~~Di~s~~~~~~~~~~~g~~ 749 (833)
+.+||+|||+|+......... ........||+.|+|||++.+ ..++.++|||| +|++
T Consensus 163 ~~~~~kL~DFG~a~~~~~~~~~~----~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~DiwS----------lG~i 228 (434)
T 2rio_A 163 ENLRILISDFGLCKKLDSGQSSF----RTNLNNPSGTSGWRAPELLEESNNLQTKRRLTRSIDIFS----------MGCV 228 (434)
T ss_dssp CSCEEEECCCTTCEECCC------------------CCTTSCHHHHSCCCTTSCCCCCCTHHHHHH----------HHHH
T ss_pred CceEEEEcccccceecCCCCccc----eeeecCCCCCCCccCHHHhccccccccccCcchhhhhHh----------HHHH
Confidence 489999999998765432111 011223569999999999865 66899999999 7888
Q ss_pred HHHHHH-HhCCCcccccccccchhhhccccchhhhhhhhchHHHHHHHHHHhhccCCCCCCCCCCHHHHHH
Q 040925 750 LHEFAK-TALPEKVMEIVDPSLLMEVMTNNSMIQEDKRVKTEECLNAIIRTGVLCSMESPFERMDMRDVVA 819 (833)
Q Consensus 750 l~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~ 819 (833)
++++++ +..|+.......... .................++..+.+++.+||+.||++|||+.|+++
T Consensus 229 l~ellt~g~~Pf~~~~~~~~~i----~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~ 295 (434)
T 2rio_A 229 FYYILSKGKHPFGDKYSRESNI----IRGIFSLDEMKCLHDRSLIAEATDLISQMIDHDPLKRPTAMKVLR 295 (434)
T ss_dssp HHHHHTTSCCTTCSTTTHHHHH----HHTCCCCCCCTTCCCHHHHHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred HHHHHhCCCCCCCCchhhHHHH----hcCCCCcccccccccccchHHHHHHHHHHhhCChhhCCCHHHHHh
Confidence 888887 777764221111111 111111111112223456788999999999999999999999986
No 289
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=100.00 E-value=2e-37 Score=349.37 Aligned_cols=389 Identities=16% Similarity=0.129 Sum_probs=238.9
Q ss_pred CCCCEEEccCCcccccCCcc-CCCCCCCCEEEcCCCcccc----cCCccccCCCCCcEEECCCcccccccCchhhcCCC-
Q 040925 23 SDLEVIRIMGNSLGGKIPTT-LGLLRNLVSLNVAENKFSG----MFPRSICNISSLELIQLALNRFSGNLPFDIVVNLP- 96 (833)
Q Consensus 23 ~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~L~~n~i~~----~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~- 96 (833)
++|++|+|++|+++...... +..+++|++|+|++|+++. .++..+..+++|++|+|++|++++..+..++..++
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 46778888888886544333 6778888888888888874 34667778888888888888887444455556666
Q ss_pred ---CccEEEccCCccee----eCCccccCCCCCcEEEcccCccccccCcCc-----cCCCcCceEecccccCCCCCCCCc
Q 040925 97 ---NLKALAIGGNNFFG----SIPYSLSNASNLELLDLSVNQFKGNVSIDF-----SSLKNLLWLNLEQNNLGTGTATDL 164 (833)
Q Consensus 97 ---~L~~L~L~~N~l~~----~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~-----~~l~~L~~L~L~~N~l~~~~~~~~ 164 (833)
+|++|+|++|.++. .++..|..+++|++|+|++|+|+......+ ...++|++|+|++|+++.....
T Consensus 83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~-- 160 (461)
T 1z7x_W 83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCE-- 160 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHH--
T ss_pred CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHH--
Confidence 68899999998873 457788888999999999998875444333 2356788888888887653321
Q ss_pred ccccccCCCCCCCEEEccCCcCcccCChhHhhh----cccccEEEccCcccccc----CChhhhcCCCCCeEeccCCccc
Q 040925 165 DFVTFLTNCSSLKALSLADNQFGGELPHSIANL----SSTVINFGIGRNQISGT----IPPGIRNLVNLIGFGAEENQLH 236 (833)
Q Consensus 165 ~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l----~~~l~~L~l~~n~i~~~----~~~~~~~l~~L~~L~L~~N~l~ 236 (833)
.++..+..+++|++|+|++|+++...+..+... ...++.|++++|.++.. ++..+..+++|++|++++|++.
T Consensus 161 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~ 240 (461)
T 1z7x_W 161 PLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLG 240 (461)
T ss_dssp HHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCH
T ss_pred HHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCC
Confidence 234456677888888888888875544444332 11344455555544432 2334444444555555544444
Q ss_pred ccCCccccCCCCCCEEEcccccCcccCCccccCCCCCCeEEeecccccCC----CCCCCCCCCccceeecCCceecccCC
Q 040925 237 GTIPDAIGELKNLQKLCLFRNFLQGRIPSGLGNLTKLANLELSSNSLQGN----IPSSLGNCQNLMSFTASQNKLTGALP 312 (833)
Q Consensus 237 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~----~~~~~~~l~~L~~L~l~~N~l~~~~p 312 (833)
+.....+. +..+..+++|++|+|++|+++.. ++..+..+++|++|++++|.+++..+
T Consensus 241 ~~~~~~l~-------------------~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~ 301 (461)
T 1z7x_W 241 DVGMAELC-------------------PGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGA 301 (461)
T ss_dssp HHHHHHHH-------------------HHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHH
T ss_pred hHHHHHHH-------------------HHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHH
Confidence 32110000 11122344455555555544422 23334444555555555555442222
Q ss_pred cccccc----cccceeeecCCCccCCC----CCcccccCCCcCEEeccCCcCCCCCCccccC-----CCCCcEEeecCCc
Q 040925 313 HQLLSI----TTLSLYLDLSNNLLNGS----LPLQVGHLKNLVILDISSNQFSGVIPGTLST-----CVCLEYLDISSNS 379 (833)
Q Consensus 313 ~~~~~~----~~ll~~L~ls~N~l~~~----~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~-----l~~L~~L~Ls~N~ 379 (833)
..+... ...+++|++++|.+++. ++..+..+++|++|++++|.+++..+..+.. +++|++|+|++|+
T Consensus 302 ~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~ 381 (461)
T 1z7x_W 302 RLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCD 381 (461)
T ss_dssp HHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC
T ss_pred HHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCC
Confidence 222211 11225566666665543 3455667788888888888887654444443 6688888888888
Q ss_pred ccc----ccCccccCCCCCCeEEccCcccCCCchhhhc-----CCCCCceEECccCcCcccc
Q 040925 380 FHG----VIPLSLSFLKSIKELNVSSNNLSGQIPEFLK-----NLSVLEFLSLSYNHFEGEV 432 (833)
Q Consensus 380 l~~----~~~~~~~~l~~L~~L~l~~N~l~~~~p~~l~-----~l~~L~~L~l~~N~l~~~~ 432 (833)
+++ .++..+..+++|++|++++|++++.....+. ....|+.|++.+|.+....
T Consensus 382 i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~~~~ 443 (461)
T 1z7x_W 382 VSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEM 443 (461)
T ss_dssp CCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHHH
T ss_pred CChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccccCHHH
Confidence 875 5667777788888888888888754222222 2345777777777766543
No 290
>2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7, activated mutant, ATP-binding, structural genomics, NPPSFA; 2.45A {Homo sapiens}
Probab=100.00 E-value=6.5e-35 Score=311.57 Aligned_cols=254 Identities=19% Similarity=0.273 Sum_probs=178.9
Q ss_pred HhcCCccCceeccCcceEEEEEEECCCceEEEEEEeeccCCc-c-hhHHHHHHHHHhhcCCCccceEeeEeecCCCCCCc
Q 040925 529 ATGEFSSSNMIGQGSFGYVYKGTLGEDEMIVAVKVINLKYKG-A-SRSFVAECEALRNIRHRNLIKIITICSSTDFKGTD 606 (833)
Q Consensus 529 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~-~-~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~ 606 (833)
..++|++.+.||+|+||.||+|++..+++.||||+++..... . .+.+.++..+++.++||||+++++++...+
T Consensus 23 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~----- 97 (318)
T 2dyl_A 23 EINDLENLGEMGSGTCGQVWKMRFRKTGHVIAVKQMRRSGNKEENKRILMDLDVVLKSHDCPYIVQCFGTFITNT----- 97 (318)
T ss_dssp CGGGEEEEEEC------CEEEEEETTTCCEEEEEEEETTSCHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSS-----
T ss_pred hhccccccceeeecCCeeEEEEEEecCCeEEEEEEecccccchHHHHHHHHHHHHHHhcCCCceeeEEEEEecCC-----
Confidence 356899999999999999999999989999999999754322 1 233445555778889999999999986654
Q ss_pred eEeEEEEecCCCChhhhhccCCCccccccCCHHHHHHHHHHHHHHHHHHhh-cCCCCceeeCCCCCCeeecCCCcEEEcc
Q 040925 607 FKAFVFEYMENGSLKDWLHQSDDQVEVCKLSLIQRVNIAIDVASAMEYLHH-HCQPPMVHGDLKPSNVLLDHDMVAHVCD 685 (833)
Q Consensus 607 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~gL~~LH~-~~~~~ivH~Dlkp~NIll~~~~~~kL~D 685 (833)
..++||||+ ++.+..+...... .+++..++.++.|++.||.|||+ . ||+||||||+||+++.++.+||+|
T Consensus 98 ~~~lv~e~~-~~~~~~l~~~~~~-----~~~~~~~~~~~~~i~~~l~~lH~~~---~i~H~dlkp~Nil~~~~~~~kl~d 168 (318)
T 2dyl_A 98 DVFIAMELM-GTCAEKLKKRMQG-----PIPERILGKMTVAIVKALYYLKEKH---GVIHRDVKPSNILLDERGQIKLCD 168 (318)
T ss_dssp EEEEEECCC-SEEHHHHHHHHTS-----CCCHHHHHHHHHHHHHHHHHHHHHH---CCCCCCCCGGGEEECTTSCEEECC
T ss_pred cEEEEEecc-CCcHHHHHHHhcc-----CCCHHHHHHHHHHHHHHHHHHHhhC---CEEeCCCCHHHEEECCCCCEEEEE
Confidence 899999999 4566655543221 68999999999999999999998 6 899999999999999999999999
Q ss_pred cccccccCcccccccccCCCccccccccccccCccccC-----CCCCCcccccccCCcCCCccccCCccHHHHHHHhCCC
Q 040925 686 FGLAKFLSDHQLDTAVKTPSSSIGLKGTVGYVAPEYGM-----GSEASMTGDIFTGRRPIDAVFNEGHSLHEFAKTALPE 760 (833)
Q Consensus 686 fG~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~-----~~~~~~~~Di~s~~~~~~~~~~~g~~l~~~~~~~~p~ 760 (833)
||++........ .....||+.|+|||++. +..++.++|||| +|+++++++++..|+
T Consensus 169 fg~~~~~~~~~~---------~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~s----------lG~il~~l~~g~~pf 229 (318)
T 2dyl_A 169 FGISGRLVDDKA---------KDRSAGCAAYMAPERIDPPDPTKPDYDIRADVWS----------LGISLVELATGQFPY 229 (318)
T ss_dssp CTTC-----------------------CCTTCCHHHHC--------CCTHHHHHH----------HHHHHHHHHHSSCTT
T ss_pred CCCchhccCCcc---------ccccCCCccccChhhcccccccccCCccccchhh----------HHHHHHHHHhCCCCC
Confidence 999976544221 11245999999999984 556889999999 888899999998887
Q ss_pred cccccccccchhhhccccchhhhhhhhchHHHHHHHHHHhhccCCCCCCCCCCHHHHHHH
Q 040925 761 KVMEIVDPSLLMEVMTNNSMIQEDKRVKTEECLNAIIRTGVLCSMESPFERMDMRDVVAK 820 (833)
Q Consensus 761 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~ 820 (833)
..... +.............. ......++..+.+++.+||+.||++|||++|+++.
T Consensus 230 ~~~~~-~~~~~~~~~~~~~~~----~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~h 284 (318)
T 2dyl_A 230 KNCKT-DFEVLTKVLQEEPPL----LPGHMGFSGDFQSFVKDCLTKDHRKRPKYNKLLEH 284 (318)
T ss_dssp TTCCS-HHHHHHHHHHSCCCC----CCSSSCCCHHHHHHHHHHTCSCTTTSCCHHHHTTS
T ss_pred CCCCc-cHHHHHHHhccCCCC----CCccCCCCHHHHHHHHHHccCChhHCcCHHHHhhC
Confidence 53111 111111111111000 00111245678899999999999999999999874
No 291
>2vuw_A Serine/threonine-protein kinase haspin; cell cycle, transferase, CAsp8, nucleotide binding; HET: MSE 5ID MPD; 1.80A {Homo sapiens} PDB: 3f2n_A* 3e7v_A* 3dlz_A* 3fmd_A* 3iq7_A* 2wb8_A
Probab=100.00 E-value=9.5e-35 Score=312.52 Aligned_cols=246 Identities=17% Similarity=0.190 Sum_probs=179.5
Q ss_pred hcCCccCceeccCcceEEEEEEECCCceEEEEEEeeccCC--------cchhHHHHHHHHHhhcC---------CCccce
Q 040925 530 TGEFSSSNMIGQGSFGYVYKGTLGEDEMIVAVKVINLKYK--------GASRSFVAECEALRNIR---------HRNLIK 592 (833)
Q Consensus 530 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~--------~~~~~~~~E~~~l~~l~---------h~niv~ 592 (833)
.++|++.+.||+|+||+||+|++ +++.||||+++.... ...+.+.+|++++++++ ||||++
T Consensus 19 ~~~y~~~~~lG~G~~g~V~~~~~--~~~~vAvK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~l~~~~~~~h~niv~ 96 (336)
T 2vuw_A 19 TEKLQRCEKIGEGVFGEVFQTIA--DHTPVAIKIIAIEGPDLVNGSHQKTFEEILPEIIISKELSLLSGEVCNRTEGFIG 96 (336)
T ss_dssp HHHHHTCEEEEEETTEEEEEEEE--TTEEEEEEEEEESCSSCBTTBCCBCHHHHHHHHHHHHHHHHGGGCSSSBCCCBCC
T ss_pred cccchheeeecccCceEEEEEEe--CCceEEEEEEecCCccccccccchhHHHHHHHHHHHHHHHHhhccccccCCchhh
Confidence 46799999999999999999998 679999999975432 22367899999999986 666666
Q ss_pred EeeEeecC-------------------------CCCCCceEeEEEEecCCCChhhhhccCCCccccccCCHHHHHHHHHH
Q 040925 593 IITICSST-------------------------DFKGTDFKAFVFEYMENGSLKDWLHQSDDQVEVCKLSLIQRVNIAID 647 (833)
Q Consensus 593 ~~~~~~~~-------------------------~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~q 647 (833)
+.+++... ++.+....|+||||+++|++.+.+.+. .+++.+++.++.|
T Consensus 97 l~~~~~~~~~~hp~iv~~~~~~~~~~~~~~~~~~~~~~~~~~lv~E~~~~g~ll~~~~~~-------~~~~~~~~~i~~q 169 (336)
T 2vuw_A 97 LNSVHCVQGSYPPLLLKAWDHYNSTKGSANDRPDFFKDDQLFIVLEFEFGGIDLEQMRTK-------LSSLATAKSILHQ 169 (336)
T ss_dssp EEEEEEEESSCCHHHHHHHHHHHHHTCCSSCCSCCCCTTCEEEEEEEECCCEETGGGTTT-------CCCHHHHHHHHHH
T ss_pred hcceeEecCCCcHHHHHHHHHHhhhccccccCccccccCeEEEEEEecCCCccHHHHHhc-------CCCHHHHHHHHHH
Confidence 66654211 011245899999999999777666432 5899999999999
Q ss_pred HHHHHHHHh-hcCCCCceeeCCCCCCeeecCCC--------------------cEEEcccccccccCcccccccccCCCc
Q 040925 648 VASAMEYLH-HHCQPPMVHGDLKPSNVLLDHDM--------------------VAHVCDFGLAKFLSDHQLDTAVKTPSS 706 (833)
Q Consensus 648 i~~gL~~LH-~~~~~~ivH~Dlkp~NIll~~~~--------------------~~kL~DfG~a~~~~~~~~~~~~~~~~~ 706 (833)
|+.||+||| +. +|+||||||+|||++.++ .+||+|||+|+.....
T Consensus 170 i~~aL~~lH~~~---~ivHrDlKp~NILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFG~a~~~~~~----------- 235 (336)
T 2vuw_A 170 LTASLAVAEASL---RFEHRDLHWGNVLLKKTSLKKLHYTLNGKSSTIPSCGLQVSIIDYTLSRLERDG----------- 235 (336)
T ss_dssp HHHHHHHHHHHH---CCBCSCCCGGGEEEEECSCSEEEEEETTEEEEEECTTEEEEECCCTTCBEEETT-----------
T ss_pred HHHHHHHHHHhC---CEeECCCCHHHEEEeccCCcceeeeccCccccccCCCceEEEeeccccEecCCC-----------
Confidence 999999999 89 999999999999999887 8999999999865432
Q ss_pred cccccccccccCccccCCCCCCcccccccC-CcCCCccccCCccHHHHHH-HhCCCcccccccccchhhhccccchhhhh
Q 040925 707 SIGLKGTVGYVAPEYGMGSEASMTGDIFTG-RRPIDAVFNEGHSLHEFAK-TALPEKVMEIVDPSLLMEVMTNNSMIQED 784 (833)
Q Consensus 707 ~~~~~gt~~y~aPE~~~~~~~~~~~Di~s~-~~~~~~~~~~g~~l~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 784 (833)
...||+.|||||++.+.. +.++||||. +.+..++|.....+..... ...... . ..........
T Consensus 236 --~~~gt~~y~aPE~~~g~~-~~~~Diwsl~~~~~~~~~~g~~p~~~~~~~~~~~~~--------~----~~~~~~~~~~ 300 (336)
T 2vuw_A 236 --IVVFCDVSMDEDLFTGDG-DYQFDIYRLMKKENNNRWGEYHPYSNVLWLHYLTDK--------M----LKQMTFKTKC 300 (336)
T ss_dssp --EEECCCCTTCSGGGCCCS-SHHHHHHHHHHHHHTTCTTSCCTHHHHHHHHHHHHH--------H----HHTCCCSSCC
T ss_pred --cEEEeecccChhhhcCCC-ccceehhhhhCCCCcccccccCCCcchhhhhHHHHh--------h----hhhhccCccc
Confidence 136999999999998776 899999993 4445555554444332110 000000 0 0000000001
Q ss_pred hhhchHHHHHHHHHHhhccCCCCCCCCCCHHHHH
Q 040925 785 KRVKTEECLNAIIRTGVLCSMESPFERMDMRDVV 818 (833)
Q Consensus 785 ~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil 818 (833)
.......+++.+.+++.+||++| |++|++
T Consensus 301 ~~~~~~~~s~~~~dli~~~L~~d-----sa~e~l 329 (336)
T 2vuw_A 301 NTPAMKQIKRKIQEFHRTMLNFS-----SATDLL 329 (336)
T ss_dssp CSHHHHHHHHHHHHHHHHGGGSS-----SHHHHH
T ss_pred chhhhhhcCHHHHHHHHHHhccC-----CHHHHH
Confidence 11234567888999999999977 899887
No 292
>3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.2e-34 Score=320.68 Aligned_cols=251 Identities=22% Similarity=0.264 Sum_probs=180.8
Q ss_pred hcCCccCceeccCcceEEEEEEECCCceEEEEEEeeccCCcchhHHHHHHHHHhhc-CCCccceEeeEeecCCCCCCceE
Q 040925 530 TGEFSSSNMIGQGSFGYVYKGTLGEDEMIVAVKVINLKYKGASRSFVAECEALRNI-RHRNLIKIITICSSTDFKGTDFK 608 (833)
Q Consensus 530 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~~~~~~~~~~~~~~~~~ 608 (833)
..+|.+.+.||+|+||+||.... .+++.||||++... ....+.+|+++++++ +||||+++++++.... ..
T Consensus 23 ~~~y~~~~~LG~G~~G~V~~~~~-~~~~~vAvK~~~~~---~~~~~~~E~~~l~~l~~HpnIv~l~~~~~~~~-----~~ 93 (432)
T 3p23_A 23 KISFCPKDVLGHGAEGTIVYRGM-FDNRDVAVKRILPE---CFSFADREVQLLRESDEHPNVIRYFCTEKDRQ-----FQ 93 (432)
T ss_dssp TEEEEEEEEEEECGGGCEEEEEE-SSSSEEEEEEECTT---TEEECHHHHHHHHHSCCCTTBCCEEEEEEETT-----EE
T ss_pred cEEEecCCeeecCcCEEEEEEEE-eCCeEEEEEEECHH---HHHHHHHHHHHHHhccCCCCcCeEEEEEecCC-----EE
Confidence 34689999999999999664433 37889999999643 234467899999999 7999999999976554 88
Q ss_pred eEEEEecCCCChhhhhccCCCccccccCCHHHHHHHHHHHHHHHHHHhhcCCCCceeeCCCCCCeeecC-----CCcEEE
Q 040925 609 AFVFEYMENGSLKDWLHQSDDQVEVCKLSLIQRVNIAIDVASAMEYLHHHCQPPMVHGDLKPSNVLLDH-----DMVAHV 683 (833)
Q Consensus 609 ~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~gL~~LH~~~~~~ivH~Dlkp~NIll~~-----~~~~kL 683 (833)
|+||||++ |+|.+++..... ..++..++.++.||+.||+|||+. +|+||||||+||+++. ...+||
T Consensus 94 ~lv~E~~~-g~L~~~l~~~~~-----~~~~~~~~~i~~qi~~aL~~LH~~---~ivHrDlKp~NIll~~~~~~~~~~~kL 164 (432)
T 3p23_A 94 YIAIELCA-ATLQEYVEQKDF-----AHLGLEPITLLQQTTSGLAHLHSL---NIVHRDLKPHNILISMPNAHGKIKAMI 164 (432)
T ss_dssp EEEEECCS-EEHHHHHHSSSC-----CCCSSCHHHHHHHHHHHHHHHHHT---TCCCCCCSTTSEEECCCBTTTBCCEEE
T ss_pred EEEEECCC-CCHHHHHHhcCC-----CccchhHHHHHHHHHHHHHHHHHC---cCEeCCCCHHHEEEecCCCCCceeEEE
Confidence 99999996 599999987643 345556788999999999999999 9999999999999953 236889
Q ss_pred cccccccccCcccccccccCCCccccccccccccCccccC---CCCCCcccccccCCcCCCccccCCccHHHHHH-HhCC
Q 040925 684 CDFGLAKFLSDHQLDTAVKTPSSSIGLKGTVGYVAPEYGM---GSEASMTGDIFTGRRPIDAVFNEGHSLHEFAK-TALP 759 (833)
Q Consensus 684 ~DfG~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~---~~~~~~~~Di~s~~~~~~~~~~~g~~l~~~~~-~~~p 759 (833)
+|||+|+........ ........||+.|+|||++. +..++.++|||| .|++++++++ +..|
T Consensus 165 ~DFG~a~~~~~~~~~-----~~~~~~~~gt~~y~APE~l~~~~~~~~t~~~DiwS----------lG~il~ellt~g~~p 229 (432)
T 3p23_A 165 SDFGLCKKLAVGRHS-----FSRRSGVPGTEGWIAPEMLSEDCKENPTYTVDIFS----------AGCVFYYVISEGSHP 229 (432)
T ss_dssp CCTTEEECC-----------------CCSCTTSCCGGGTSCC---CCCTHHHHHH----------HHHHHHHHHTTSCBT
T ss_pred ecccceeeccCCCcc-----eeeccccCCCcCccChhhhhcccccCCCcHHHHHH----------HHHHHHHHHcCCCCC
Confidence 999999876543211 11223457999999999987 456788999999 7778888888 6666
Q ss_pred CcccccccccchhhhccccchhhhhhhhchHHHHHHHHHHhhccCCCCCCCCCCHHHHHH
Q 040925 760 EKVMEIVDPSLLMEVMTNNSMIQEDKRVKTEECLNAIIRTGVLCSMESPFERMDMRDVVA 819 (833)
Q Consensus 760 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~ 819 (833)
+.......... .... ..... ..........+.+++.+||+.||++|||++|+++
T Consensus 230 f~~~~~~~~~~---~~~~-~~~~~--~~~~~~~~~~~~~li~~~L~~dP~~Rps~~evl~ 283 (432)
T 3p23_A 230 FGKSLQRQANI---LLGA-CSLDC--LHPEKHEDVIARELIEKMIAMDPQKRPSAKHVLK 283 (432)
T ss_dssp TBSTTTHHHHH---HTTC-CCCTT--SCTTCHHHHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred cchhhHHHHHH---Hhcc-CCccc--cCccccccHHHHHHHHHHHhCCHhhCCCHHHHHh
Confidence 54211100000 0000 00000 0011223556789999999999999999999984
No 293
>3uqc_A Probable conserved transmembrane protein; structural genomics, TB structural genomics consortium, TBSG fold, FHAA, transferase; 2.26A {Mycobacterium tuberculosis} PDB: 3oun_B* 3otv_A 3ouk_A
Probab=100.00 E-value=4.9e-34 Score=298.55 Aligned_cols=233 Identities=12% Similarity=0.040 Sum_probs=184.7
Q ss_pred cCCccCceeccCcceEEEEEEECCCceEEEEEEeeccCCc---chhHHHHHHHHHhhcCCCccceEeeEeecCCCCCCce
Q 040925 531 GEFSSSNMIGQGSFGYVYKGTLGEDEMIVAVKVINLKYKG---ASRSFVAECEALRNIRHRNLIKIITICSSTDFKGTDF 607 (833)
Q Consensus 531 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~---~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~ 607 (833)
++|++.+.||+|+||.||+|++..+++.||||+++..... ..+.+.+|+.++++++||||+++++++...+ .
T Consensus 31 ~~y~i~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~~-----~ 105 (286)
T 3uqc_A 31 GRYRLLIFHGGVPPLQFWQALDTALDRQVALTFVDPQGVLPDDVLQETLSRTLRLSRIDKPGVARVLDVVHTRA-----G 105 (286)
T ss_dssp TTEEEEEEEEBSTTCEEEEEEETTTTEEEEEEESCTTCCSCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEETT-----E
T ss_pred CcEEEEEEEcccCCeEEEEEEecCCCceEEEEEECcccccCHHHHHHHHHHHHHHhcCCCCCcceeeEEEEECC-----c
Confidence 5799999999999999999999989999999999755332 2367899999999999999999999976654 8
Q ss_pred EeEEEEecCCCChhhhhccCCCccccccCCHHHHHHHHHHHHHHHHHHhhcCCCCceeeCCCCCCeeecCCCcEEEcccc
Q 040925 608 KAFVFEYMENGSLKDWLHQSDDQVEVCKLSLIQRVNIAIDVASAMEYLHHHCQPPMVHGDLKPSNVLLDHDMVAHVCDFG 687 (833)
Q Consensus 608 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~gL~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kL~DfG 687 (833)
.|+||||+++++|.+++... ....++.+++.|++.||+|||+. ||+||||||+||+++.++.+||+++|
T Consensus 106 ~~lv~e~~~g~~L~~~l~~~--------~~~~~~~~i~~ql~~aL~~lH~~---givH~Dikp~NIll~~~g~~kl~~~~ 174 (286)
T 3uqc_A 106 GLVVAEWIRGGSLQEVADTS--------PSPVGAIRAMQSLAAAADAAHRA---GVALSIDHPSRVRVSIDGDVVLAYPA 174 (286)
T ss_dssp EEEEEECCCEEEHHHHHTTC--------CCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCSGGGEEEETTSCEEECSCC
T ss_pred EEEEEEecCCCCHHHHHhcC--------CChHHHHHHHHHHHHHHHHHHHC---CCccCCCCcccEEEcCCCCEEEEecc
Confidence 99999999999999999542 35557889999999999999999 99999999999999999999997443
Q ss_pred cccccCcccccccccCCCccccccccccccCccccCCCCCCcccccccCCcCCCccccCCccHHHHHHHhCCCccccccc
Q 040925 688 LAKFLSDHQLDTAVKTPSSSIGLKGTVGYVAPEYGMGSEASMTGDIFTGRRPIDAVFNEGHSLHEFAKTALPEKVMEIVD 767 (833)
Q Consensus 688 ~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~s~~~~~~~~~~~g~~l~~~~~~~~p~~~~~~~~ 767 (833)
|++| ++.++|||| +|+++|+++++..|+......+
T Consensus 175 ----------------------------~~~~-------~~~~~Di~s----------lG~il~elltg~~Pf~~~~~~~ 209 (286)
T 3uqc_A 175 ----------------------------TMPD-------ANPQDDIRG----------IGASLYALLVNRWPLPEAGVRS 209 (286)
T ss_dssp ----------------------------CCTT-------CCHHHHHHH----------HHHHHHHHHHSEECSCCCSBCC
T ss_pred ----------------------------ccCC-------CCchhHHHH----------HHHHHHHHHHCCCCCCcCCcch
Confidence 3333 688999999 8899999999999986332211
Q ss_pred cc-chhhhccccchhhhhhhhchHHHHHHHHHHhhccCCCCCCCCCCHHHHHHHHHHhhhhh
Q 040925 768 PS-LLMEVMTNNSMIQEDKRVKTEECLNAIIRTGVLCSMESPFERMDMRDVVAKLCHTRETF 828 (833)
Q Consensus 768 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~i~~~~ 828 (833)
.- .......... ........++++.+.+++.+||+.||++| |+.|+++.|+.+....
T Consensus 210 ~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~li~~~l~~dP~~R-s~~el~~~L~~~~~~~ 267 (286)
T 3uqc_A 210 GLAPAERDTAGQP---IEPADIDRDIPFQISAVAARSVQGDGGIR-SASTLLNLMQQATAVA 267 (286)
T ss_dssp CSEECCBCTTSCB---CCHHHHCTTSCHHHHHHHHHHHCTTSSCC-CHHHHHHHHHHHHC--
T ss_pred hhHHHHHHhccCC---CChhhcccCCCHHHHHHHHHHcccCCccC-CHHHHHHHHHHHhccC
Confidence 10 0000001110 01111123456778999999999999999 9999999999987543
No 294
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=100.00 E-value=3.6e-34 Score=336.65 Aligned_cols=246 Identities=24% Similarity=0.328 Sum_probs=193.0
Q ss_pred cCCccCceeccCcceEEEEEEECC-CceEEEEEEeeccCC-cchhHHHHHHHHHhhcCCCccceEeeEeecCCCCCCceE
Q 040925 531 GEFSSSNMIGQGSFGYVYKGTLGE-DEMIVAVKVINLKYK-GASRSFVAECEALRNIRHRNLIKIITICSSTDFKGTDFK 608 (833)
Q Consensus 531 ~~y~~~~~lg~G~~g~Vy~~~~~~-~~~~vavK~~~~~~~-~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~ 608 (833)
++|++.+.||+|+||.||+|.+.. +++.||||++..... .....+.+|++++++++||||+++++++...+..+....
T Consensus 80 ~~y~i~~~lg~G~~g~Vy~a~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~~~~~ 159 (681)
T 2pzi_A 80 GQYEVKGCIAHGGLGWIYLALDRNVNGRPVVLKGLVHSGDAEAQAMAMAERQFLAEVVHPSIVQIFNFVEHTDRHGDPVG 159 (681)
T ss_dssp TTEEEEEEEEEETTEEEEEEEEGGGTTEEEEEEESCSSCCHHHHHHHHHHHGGGGGCCCTTBCCEEEEEEEECTTSCEEE
T ss_pred CceEEEEEEeeCCCeEEEEEEEcCCCCcEEEEEEeCccCCHHHHHHHHHHHHHHHhcCCCCcCeEeeeEeecCCCCCcee
Confidence 689999999999999999999975 689999999864322 334578899999999999999999999877653333347
Q ss_pred eEEEEecCCCChhhhhccCCCccccccCCHHHHHHHHHHHHHHHHHHhhcCCCCceeeCCCCCCeeecCCCcEEEccccc
Q 040925 609 AFVFEYMENGSLKDWLHQSDDQVEVCKLSLIQRVNIAIDVASAMEYLHHHCQPPMVHGDLKPSNVLLDHDMVAHVCDFGL 688 (833)
Q Consensus 609 ~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~gL~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kL~DfG~ 688 (833)
|+||||+++++|.+++.. .+++.+++.|+.||+.||.|||+. |||||||||+||+++.+ .+||+|||+
T Consensus 160 ~lv~E~~~g~~L~~~~~~--------~l~~~~~~~~~~qi~~aL~~lH~~---giiHrDlkp~NIll~~~-~~kl~DFG~ 227 (681)
T 2pzi_A 160 YIVMEYVGGQSLKRSKGQ--------KLPVAEAIAYLLEILPALSYLHSI---GLVYNDLKPENIMLTEE-QLKLIDLGA 227 (681)
T ss_dssp EEEEECCCCEECC----C--------CCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECSS-CEEECCCTT
T ss_pred EEEEEeCCCCcHHHHHhC--------CCCHHHHHHHHHHHHHHHHHHHHC---CCeecccChHHeEEeCC-cEEEEeccc
Confidence 999999999999987754 589999999999999999999999 99999999999999875 899999999
Q ss_pred ccccCcccccccccCCCccccccccccccCccccCCCCCCcccccccCCcCCCccccCCccHHHHHHHhCCCcccccccc
Q 040925 689 AKFLSDHQLDTAVKTPSSSIGLKGTVGYVAPEYGMGSEASMTGDIFTGRRPIDAVFNEGHSLHEFAKTALPEKVMEIVDP 768 (833)
Q Consensus 689 a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~s~~~~~~~~~~~g~~l~~~~~~~~p~~~~~~~~~ 768 (833)
++..... ....||+.|+|||++.+. ++.++|||| +|++++++.++..|+.... .+
T Consensus 228 a~~~~~~------------~~~~gt~~y~aPE~~~~~-~~~~sDi~s----------lG~~l~~l~~g~~~~~~~~-~~- 282 (681)
T 2pzi_A 228 VSRINSF------------GYLYGTPGFQAPEIVRTG-PTVATDIYT----------VGRTLAALTLDLPTRNGRY-VD- 282 (681)
T ss_dssp CEETTCC------------SCCCCCTTTSCTTHHHHC-SCHHHHHHH----------HHHHHHHHHSCCCEETTEE-CS-
T ss_pred chhcccC------------CccCCCccccCHHHHcCC-CCCceehhh----------hHHHHHHHHhCCCCCcccc-cc-
Confidence 9865432 124699999999988765 488999999 7788888887765543111 00
Q ss_pred cchhhhccccchhhhhhhhchHHHHHHHHHHhhccCCCCCCCCCC-HHHHHHHHHHhhh
Q 040925 769 SLLMEVMTNNSMIQEDKRVKTEECLNAIIRTGVLCSMESPFERMD-MRDVVAKLCHTRE 826 (833)
Q Consensus 769 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt-~~eil~~L~~i~~ 826 (833)
.. . ........++.+.+++.+||+.||++||+ ++++...+..+.+
T Consensus 283 ~~-----~--------~~~~~~~~~~~l~~li~~~l~~dP~~R~~~~~~l~~~l~~~~~ 328 (681)
T 2pzi_A 283 GL-----P--------EDDPVLKTYDSYGRLLRRAIDPDPRQRFTTAEEMSAQLTGVLR 328 (681)
T ss_dssp SC-----C--------TTCHHHHHCHHHHHHHHHHTCSSGGGSCSSHHHHHHHHHHHHH
T ss_pred cc-----c--------ccccccccCHHHHHHHhhhccCChhhCCCHHHHHHHHHHHHHH
Confidence 00 0 00111234567889999999999999995 6677777776654
No 295
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=9.9e-34 Score=300.53 Aligned_cols=255 Identities=30% Similarity=0.471 Sum_probs=221.0
Q ss_pred CCCCEEEccCCcCcc--cCChhHhhhcccccEEEccC-ccccccCChhhhcCCCCCeEeccCCcccccCCccccCCCCCC
Q 040925 174 SSLKALSLADNQFGG--ELPHSIANLSSTVINFGIGR-NQISGTIPPGIRNLVNLIGFGAEENQLHGTIPDAIGELKNLQ 250 (833)
Q Consensus 174 ~~L~~L~Ls~N~l~~--~~p~~~~~l~~~l~~L~l~~-n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 250 (833)
.+++.|+|++|++++ .+|..+.++. .++.|++++ |.+.+.+|..|.++++|++|+|++|++++.+|..|..+++|+
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~-~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 128 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLP-YLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLV 128 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCT-TCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred ceEEEEECCCCCccCCcccChhHhCCC-CCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCC
Confidence 356666666666666 6666666654 366677773 777777888888899999999999999888899999999999
Q ss_pred EEEcccccCcccCCccccCCCCCCeEEeecccccCCCCCCCCCCC-ccceeecCCceecccCCcccccccccceeeecCC
Q 040925 251 KLCLFRNFLQGRIPSGLGNLTKLANLELSSNSLQGNIPSSLGNCQ-NLMSFTASQNKLTGALPHQLLSITTLSLYLDLSN 329 (833)
Q Consensus 251 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~-~L~~L~l~~N~l~~~~p~~~~~~~~ll~~L~ls~ 329 (833)
+|+|++|.+++.+|..|..+++|++|+|++|++++.+|..+..++ +|+.|++++|++++.+|..+..+. +++|++++
T Consensus 129 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~--L~~L~Ls~ 206 (313)
T 1ogq_A 129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN--LAFVDLSR 206 (313)
T ss_dssp EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC--CSEEECCS
T ss_pred EEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc--ccEEECcC
Confidence 999999999988899999999999999999999888888898888 899999999999988888888776 48899999
Q ss_pred CccCCCCCcccccCCCcCEEeccCCcCCCCCCccccCCCCCcEEeecCCccccccCccccCCCCCCeEEccCcccCCCch
Q 040925 330 NLLNGSLPLQVGHLKNLVILDISSNQFSGVIPGTLSTCVCLEYLDISSNSFHGVIPLSLSFLKSIKELNVSSNNLSGQIP 409 (833)
Q Consensus 330 N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p 409 (833)
|.+++..|..|..+++|+.|+|++|.+++.+|. +..+++|++|+|++|++++..|..+..+++|+.|+|++|++++.+|
T Consensus 207 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip 285 (313)
T 1ogq_A 207 NMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285 (313)
T ss_dssp SEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECC
T ss_pred CcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCC
Confidence 999988999999999999999999999976665 8899999999999999999999999999999999999999999888
Q ss_pred hhhcCCCCCceEECccCcCccccC
Q 040925 410 EFLKNLSVLEFLSLSYNHFEGEVP 433 (833)
Q Consensus 410 ~~l~~l~~L~~L~l~~N~l~~~~~ 433 (833)
.. ..+++|+.+++++|+.-|..|
T Consensus 286 ~~-~~l~~L~~l~l~~N~~lc~~p 308 (313)
T 1ogq_A 286 QG-GNLQRFDVSAYANNKCLCGSP 308 (313)
T ss_dssp CS-TTGGGSCGGGTCSSSEEESTT
T ss_pred CC-ccccccChHHhcCCCCccCCC
Confidence 76 889999999999999655444
No 296
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=100.00 E-value=1.1e-35 Score=334.96 Aligned_cols=376 Identities=16% Similarity=0.110 Sum_probs=245.6
Q ss_pred CcEEECCCcccccccCchhhcCCCCccEEEccCCccee----eCCccccCCCCCcEEEcccCccccccCcCc-cCCC---
Q 040925 73 LELIQLALNRFSGNLPFDIVVNLPNLKALAIGGNNFFG----SIPYSLSNASNLELLDLSVNQFKGNVSIDF-SSLK--- 144 (833)
Q Consensus 73 L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~----~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~-~~l~--- 144 (833)
|+.|+|++|++++.....+|..+++|++|+|++|.++. .++..+..+++|++|+|++|+|.......+ ..++
T Consensus 5 l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~ 84 (461)
T 1z7x_W 5 IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPS 84 (461)
T ss_dssp EEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTT
T ss_pred ceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCC
Confidence 34444444444322222224444444555555444432 123344444555555555555543222221 2233
Q ss_pred -cCceEecccccCCCCCCCCcccccccCCCCCCCEEEccCCcCcccCChhHhhh----cccccEEEccCcccccc----C
Q 040925 145 -NLLWLNLEQNNLGTGTATDLDFVTFLTNCSSLKALSLADNQFGGELPHSIANL----SSTVINFGIGRNQISGT----I 215 (833)
Q Consensus 145 -~L~~L~L~~N~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l----~~~l~~L~l~~n~i~~~----~ 215 (833)
+|++|+|++|.++..... .++..+..+++|++|+|++|+++...+..+... ...++.|++++|++++. +
T Consensus 85 ~~L~~L~L~~n~i~~~~~~--~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l 162 (461)
T 1z7x_W 85 CKIQKLSLQNCCLTGAGCG--VLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL 162 (461)
T ss_dssp CCCCEEECTTSCCBGGGHH--HHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred CceeEEEccCCCCCHHHHH--HHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHH
Confidence 455555555554321110 123345555566666666666554444444332 12355666666666543 3
Q ss_pred ChhhhcCCCCCeEeccCCcccccCCcccc-----CCCCCCEEEcccccCccc----CCccccCCCCCCeEEeecccccCC
Q 040925 216 PPGIRNLVNLIGFGAEENQLHGTIPDAIG-----ELKNLQKLCLFRNFLQGR----IPSGLGNLTKLANLELSSNSLQGN 286 (833)
Q Consensus 216 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~-----~l~~L~~L~L~~N~l~~~----~~~~~~~l~~L~~L~L~~N~l~~~ 286 (833)
+..+..+++|++|++++|.+....+..+. ..++|++|+|++|.+++. ++..+..+++|++|+|++|+++..
T Consensus 163 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~ 242 (461)
T 1z7x_W 163 ASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDV 242 (461)
T ss_dssp HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHH
T ss_pred HHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChH
Confidence 55677789999999999999876555554 367999999999999864 466778899999999999998753
Q ss_pred C-----CCCCCCCCccceeecCCceeccc----CCcccccccccceeeecCCCccCCCCCccccc-----CCCcCEEecc
Q 040925 287 I-----PSSLGNCQNLMSFTASQNKLTGA----LPHQLLSITTLSLYLDLSNNLLNGSLPLQVGH-----LKNLVILDIS 352 (833)
Q Consensus 287 ~-----~~~~~~l~~L~~L~l~~N~l~~~----~p~~~~~~~~ll~~L~ls~N~l~~~~~~~~~~-----l~~L~~L~ls 352 (833)
. +..+..+++|+.|++++|++++. ++..+.....+ ++|++++|.+++..+..+.. .++|++|+++
T Consensus 243 ~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L-~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~ 321 (461)
T 1z7x_W 243 GMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESL-KELSLAGNELGDEGARLLCETLLEPGCQLESLWVK 321 (461)
T ss_dssp HHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTC-CEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECT
T ss_pred HHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCc-ceEECCCCCCchHHHHHHHHHhccCCccceeeEcC
Confidence 2 33444689999999999999843 56666667777 78999999987544444433 3799999999
Q ss_pred CCcCCCC----CCccccCCCCCcEEeecCCccccccCccccC-----CCCCCeEEccCcccCC----CchhhhcCCCCCc
Q 040925 353 SNQFSGV----IPGTLSTCVCLEYLDISSNSFHGVIPLSLSF-----LKSIKELNVSSNNLSG----QIPEFLKNLSVLE 419 (833)
Q Consensus 353 ~N~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-----l~~L~~L~l~~N~l~~----~~p~~l~~l~~L~ 419 (833)
+|.+++. .+..+..+++|++|+|++|++++..+..+.. .++|+.|++++|.+++ .+|..+..+++|+
T Consensus 322 ~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~ 401 (461)
T 1z7x_W 322 SCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLR 401 (461)
T ss_dssp TSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCC
T ss_pred CCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCcc
Confidence 9999865 4566788899999999999998765554442 6799999999999986 7888999999999
Q ss_pred eEECccCcCccccCCC------CccCCCccccccCCcC
Q 040925 420 FLSLSYNHFEGEVPTK------GVFSNKTKISLQGNMK 451 (833)
Q Consensus 420 ~L~l~~N~l~~~~~~~------~~~~~~~~l~l~~N~~ 451 (833)
.|++++|+++...... .....++.+.+.++.+
T Consensus 402 ~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~ 439 (461)
T 1z7x_W 402 ELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYW 439 (461)
T ss_dssp EEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCC
T ss_pred EEECCCCCCCHHHHHHHHHHhccCCcchhheeeccccc
Confidence 9999999998642100 1123456666665544
No 297
>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii}
Probab=100.00 E-value=9.7e-34 Score=312.59 Aligned_cols=252 Identities=15% Similarity=0.107 Sum_probs=183.4
Q ss_pred hcCCccCceeccCcceEEEEEEECCCceEEEEEEeeccCC---cchhHHHHHHHHHhhcCC-CccceEe---------eE
Q 040925 530 TGEFSSSNMIGQGSFGYVYKGTLGEDEMIVAVKVINLKYK---GASRSFVAECEALRNIRH-RNLIKII---------TI 596 (833)
Q Consensus 530 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~---~~~~~~~~E~~~l~~l~h-~niv~~~---------~~ 596 (833)
...|...+.||+|+||.||+|++..+++.||||+++.... ...+.+.+|+.+++.++| ++...+. +.
T Consensus 77 ~~~~~~~~~LG~G~fG~Vy~a~~~~~g~~vAvK~~~~~~~~~~~~~~~~~~E~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 156 (413)
T 3dzo_A 77 PRTLVRGTVLGQEDPYAYLEATDQETGESFEVHVPYFTERPPSNAIKQMKEEVLRLRLLRGIKNQKQAKVHLRFIFPFDL 156 (413)
T ss_dssp CEEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEECCSCC----CCHHHHHHHHGGGGSTTCCSHHHHHHHTCBCCCCEE
T ss_pred ceeEEEecccccCCCEEEEEEEecCCCCceEEEEEecCCCccHHHHHHHHHHHHHHHhhccCCCHHHHHHhcccccchhh
Confidence 3457888999999999999999999999999999874322 235789999999999977 3221111 11
Q ss_pred eec------------CCCCCCceEeEEEEecCCCChhhhhccCCC-ccccccCCHHHHHHHHHHHHHHHHHHhhcCCCCc
Q 040925 597 CSS------------TDFKGTDFKAFVFEYMENGSLKDWLHQSDD-QVEVCKLSLIQRVNIAIDVASAMEYLHHHCQPPM 663 (833)
Q Consensus 597 ~~~------------~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~-~~~~~~l~~~~~~~i~~qi~~gL~~LH~~~~~~i 663 (833)
+.. .........+++|+++ +++|.+++..... ......+++..++.++.|++.||+|||+. +|
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~L~~ll~~l~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~---~i 232 (413)
T 3dzo_A 157 VKDPQKKKMIRVRLDERDMWVLSRFFLYPRM-QSNLQTFGEVLLSHSSTHKSLVHHARLQLTLQVIRLLASLHHY---GL 232 (413)
T ss_dssp EECCC---------------CCSEEEEEECC-SEEHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHHHT---TE
T ss_pred cccCCCCccccccCCCccccccceEEEeehh-cCCHHHHHHHhhcccccCCCCCHHHHHHHHHHHHHHHHHHHhC---Cc
Confidence 111 0000012467778776 5799999852110 00012578899999999999999999999 99
Q ss_pred eeeCCCCCCeeecCCCcEEEcccccccccCcccccccccCCCccccccccccccCcccc----------CCCCCCccccc
Q 040925 664 VHGDLKPSNVLLDHDMVAHVCDFGLAKFLSDHQLDTAVKTPSSSIGLKGTVGYVAPEYG----------MGSEASMTGDI 733 (833)
Q Consensus 664 vH~Dlkp~NIll~~~~~~kL~DfG~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~----------~~~~~~~~~Di 733 (833)
+||||||+|||++.++.+||+|||+++..... ....+| +.|+|||++ .+..++.++||
T Consensus 233 iHrDiKp~NILl~~~~~~kL~DFG~a~~~~~~-----------~~~~~g-~~y~aPE~~~~~~~~~~~~~~~~~~~~~Dv 300 (413)
T 3dzo_A 233 VHTYLRPVDIVLDQRGGVFLTGFEHLVRDGAS-----------AVSPIG-RGFAPPETTAERMLPFGQHHPTLMTFAFDT 300 (413)
T ss_dssp ECSCCCGGGEEECTTCCEEECCGGGCEETTEE-----------ECCCCC-TTTCCHHHHHHHTSTTGGGCCEEECHHHHH
T ss_pred ccCCcccceEEEecCCeEEEEeccceeecCCc-----------cccCCC-CceeCchhhhccccccccccCcCCCchhhH
Confidence 99999999999999999999999999865443 122457 999999998 66678999999
Q ss_pred ccCCcCCCccccCCccHHHHHHHhCCCcccccccccchhhhccccchhhhhhhhchHHHHHHHHHHhhccCCCCCCCCCC
Q 040925 734 FTGRRPIDAVFNEGHSLHEFAKTALPEKVMEIVDPSLLMEVMTNNSMIQEDKRVKTEECLNAIIRTGVLCSMESPFERMD 813 (833)
Q Consensus 734 ~s~~~~~~~~~~~g~~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt 813 (833)
|| +|+++++++++..|+....... ........ ...+++.+.+++.+||+.||++|||
T Consensus 301 wS----------lGvil~elltg~~Pf~~~~~~~--~~~~~~~~-----------~~~~~~~~~~li~~~l~~dP~~Rpt 357 (413)
T 3dzo_A 301 WT----------LGLAIYWIWCADLPNTDDAALG--GSEWIFRS-----------CKNIPQPVRALLEGFLRYPKEDRLL 357 (413)
T ss_dssp HH----------HHHHHHHHHHSSCCCCTTGGGS--CSGGGGSS-----------CCCCCHHHHHHHHHHTCSSGGGSCC
T ss_pred HH----------HHHHHHHHHHCCCCCCCcchhh--hHHHHHhh-----------cccCCHHHHHHHHHHccCChhhCcC
Confidence 99 8889999999999876332111 10111110 0123467899999999999999999
Q ss_pred HHHHHHH
Q 040925 814 MRDVVAK 820 (833)
Q Consensus 814 ~~eil~~ 820 (833)
+.|+++.
T Consensus 358 ~~~~l~~ 364 (413)
T 3dzo_A 358 PLQAMET 364 (413)
T ss_dssp HHHHTTS
T ss_pred HHHHHhC
Confidence 8887543
No 298
>3m2w_A MAP kinase-activated protein kinase 2; small molecule inhibitor, spiroazetidine-tetracycle, ATP-SIT inhibitor, novartis compound NVP-BXS169; HET: L8I; 2.41A {Homo sapiens} PDB: 3kga_A* 3m42_A*
Probab=100.00 E-value=6.1e-33 Score=293.15 Aligned_cols=235 Identities=18% Similarity=0.261 Sum_probs=182.2
Q ss_pred hcCCccC-ceeccCcceEEEEEEECCCceEEEEEEeeccCCcchhHHHHHHHHH-hhcCCCccceEeeEeecCCCCCCce
Q 040925 530 TGEFSSS-NMIGQGSFGYVYKGTLGEDEMIVAVKVINLKYKGASRSFVAECEAL-RNIRHRNLIKIITICSSTDFKGTDF 607 (833)
Q Consensus 530 ~~~y~~~-~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l-~~l~h~niv~~~~~~~~~~~~~~~~ 607 (833)
.++|.+. +.||+|+||.||+|.+..+++.||+|+++. ...+.+|++++ +..+||||+++++++... ..+...
T Consensus 16 ~~~y~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~-----~~~~~~e~~~~~~~~~h~~i~~~~~~~~~~-~~~~~~ 89 (299)
T 3m2w_A 16 IDDYKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQD-----CPKARREVELHWRASQCPHIVRIVDVYENL-YAGRKC 89 (299)
T ss_dssp GGTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEC-----SHHHHHHHHHHHHHTTSTTBCCEEEEEEEE-ETTEEE
T ss_pred ccchhhcCcccccCCCeEEEEEEEcCCCcEEEEEEecc-----cHHHHHHHHHHHHhccCCCchhHHhhhhhh-cCCCce
Confidence 4578887 789999999999999999999999999962 35678899988 555899999999997652 123457
Q ss_pred EeEEEEecCCCChhhhhccCCCccccccCCHHHHHHHHHHHHHHHHHHhhcCCCCceeeCCCCCCeeecC---CCcEEEc
Q 040925 608 KAFVFEYMENGSLKDWLHQSDDQVEVCKLSLIQRVNIAIDVASAMEYLHHHCQPPMVHGDLKPSNVLLDH---DMVAHVC 684 (833)
Q Consensus 608 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~gL~~LH~~~~~~ivH~Dlkp~NIll~~---~~~~kL~ 684 (833)
.++||||+++|+|.+++...... .+++.+++.++.|++.||+|||+. +|+||||||+||+++. ++.+||+
T Consensus 90 ~~lv~e~~~~~~L~~~l~~~~~~----~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~~~~kl~ 162 (299)
T 3m2w_A 90 LLIVMECLDGGELFSRIQDRGDQ----AFTEREASEIMKSIGEAIQYLHSI---NIAHRDVKPENLLYTSKRPNAILKLT 162 (299)
T ss_dssp EEEEECCCCSCBHHHHHHHCTTC----CCBHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEESSSSTTCCEEEC
T ss_pred EEEEEeecCCCcHHHHHHhccCC----CCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCCHHHEEEecCCCCCcEEEe
Confidence 89999999999999999875432 689999999999999999999999 9999999999999998 7899999
Q ss_pred ccccccccCcccccccccCCCccccccccccccCccccCCCCCCcccccccCCcCCCccccCCccHHHHHHHhCCCcccc
Q 040925 685 DFGLAKFLSDHQLDTAVKTPSSSIGLKGTVGYVAPEYGMGSEASMTGDIFTGRRPIDAVFNEGHSLHEFAKTALPEKVME 764 (833)
Q Consensus 685 DfG~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~s~~~~~~~~~~~g~~l~~~~~~~~p~~~~~ 764 (833)
|||++.... +..++.++|||| .|+++++++++..|+....
T Consensus 163 Dfg~a~~~~------------------------------~~~~~~~~Diws----------lG~il~el~tg~~pf~~~~ 202 (299)
T 3m2w_A 163 DFGFAKETT------------------------------GEKYDKSCDMWS----------LGVIMYILLCGYPPFYSNH 202 (299)
T ss_dssp CCTTCEECT------------------------------TCGGGGHHHHHH----------HHHHHHHHHHSSCSCCC--
T ss_pred ccccccccc------------------------------cccCCchhhHHH----------HHHHHHHHHHCCCCCCCCc
Confidence 999986432 134678999999 8889999999998875322
Q ss_pred ccc--ccchhhhccccchhhhhhhhchHHHHHHHHHHhhccCCCCCCCCCCHHHHHHH
Q 040925 765 IVD--PSLLMEVMTNNSMIQEDKRVKTEECLNAIIRTGVLCSMESPFERMDMRDVVAK 820 (833)
Q Consensus 765 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~ 820 (833)
... ............. ........+++.+.+++.+||+.||++|||++|+++.
T Consensus 203 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~li~~~l~~dP~~Rps~~e~l~h 257 (299)
T 3m2w_A 203 GLAISPGMKTRIRMGQYE---FPNPEWSEVSEEVKMLIRNLLKTEPTQRMTITEFMNH 257 (299)
T ss_dssp -----CCSCCSSCTTCCS---SCHHHHTTSCHHHHHHHHHHTCSSTTTSCCHHHHHTS
T ss_pred chhhhHHHHHHHhhcccc---CCchhcccCCHHHHHHHHHHcccChhhCCCHHHHhcC
Confidence 111 1111111001000 0111112356778999999999999999999999874
No 299
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.97 E-value=1.8e-30 Score=290.79 Aligned_cols=248 Identities=20% Similarity=0.232 Sum_probs=200.2
Q ss_pred CCCEEEccCCcccccCCccCCCCCCCCEEEcCCCcccccCCccccCCCCCcEEECCCcccccccCchhhcCCCCccEEEc
Q 040925 24 DLEVIRIMGNSLGGKIPTTLGLLRNLVSLNVAENKFSGMFPRSICNISSLELIQLALNRFSGNLPFDIVVNLPNLKALAI 103 (833)
Q Consensus 24 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L 103 (833)
....++.+++.+ +.+|..+. ++|++|+|++|+|+++.|..|.++++|+.|+|++|+++ .++...|.++++|++|+|
T Consensus 55 ~~~~v~c~~~~l-~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~L 130 (452)
T 3zyi_A 55 QFSKVVCTRRGL-SEVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIR-QIEVGAFNGLASLNTLEL 130 (452)
T ss_dssp SSCEEECCSSCC-SSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEEC
T ss_pred CCcEEEECCCCc-CccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccC-CcChhhccCcccCCEEEC
Confidence 456788888888 45665554 67888888888888777888888888888888888887 677777888888888888
Q ss_pred cCCcceeeCCccccCCCCCcEEEcccCccccccCcCccCCCcCceEeccc-ccCCCCCCCCcccccccCCCCCCCEEEcc
Q 040925 104 GGNNFFGSIPYSLSNASNLELLDLSVNQFKGNVSIDFSSLKNLLWLNLEQ-NNLGTGTATDLDFVTFLTNCSSLKALSLA 182 (833)
Q Consensus 104 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~~~~l~~l~~L~~L~Ls 182 (833)
++|+|+...+..|.++++|++|+|++|+|+.+++..|..+++|++|+|++ |.+..++. ..|.++++|++|+|+
T Consensus 131 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~------~~~~~l~~L~~L~L~ 204 (452)
T 3zyi_A 131 FDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISE------GAFEGLFNLKYLNLG 204 (452)
T ss_dssp CSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECT------TTTTTCTTCCEEECT
T ss_pred CCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccCh------hhccCCCCCCEEECC
Confidence 88888877777788888888888888888888888888888888888887 45554443 236778888888888
Q ss_pred CCcCcccCChhHhhhcccccEEEccCccccccCChhhhcCCCCCeEeccCCcccccCCccccCCCCCCEEEcccccCccc
Q 040925 183 DNQFGGELPHSIANLSSTVINFGIGRNQISGTIPPGIRNLVNLIGFGAEENQLHGTIPDAIGELKNLQKLCLFRNFLQGR 262 (833)
Q Consensus 183 ~N~l~~~~p~~~~~l~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 262 (833)
+|++++ +| .+..+++|+.|+|++|++.++.|..|.++++|++|+|++|.+++.
T Consensus 205 ~n~l~~-~~--------------------------~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 257 (452)
T 3zyi_A 205 MCNIKD-MP--------------------------NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLI 257 (452)
T ss_dssp TSCCSS-CC--------------------------CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEE
T ss_pred CCcccc-cc--------------------------cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceE
Confidence 888762 11 256677888888888888888888888889999999999999888
Q ss_pred CCccccCCCCCCeEEeecccccCCCCCCCCCCCccceeecCCceec
Q 040925 263 IPSGLGNLTKLANLELSSNSLQGNIPSSLGNCQNLMSFTASQNKLT 308 (833)
Q Consensus 263 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 308 (833)
.+..|.++++|+.|+|++|+|++..+..|..+++|+.|++++|.+.
T Consensus 258 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 258 ERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEE
T ss_pred CHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcC
Confidence 8888888899999999999998777888888899999999999887
No 300
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.97 E-value=1.9e-30 Score=289.63 Aligned_cols=249 Identities=22% Similarity=0.263 Sum_probs=206.4
Q ss_pred CCCCEEEccCCcccccCCccCCCCCCCCEEEcCCCcccccCCccccCCCCCcEEECCCcccccccCchhhcCCCCccEEE
Q 040925 23 SDLEVIRIMGNSLGGKIPTTLGLLRNLVSLNVAENKFSGMFPRSICNISSLELIQLALNRFSGNLPFDIVVNLPNLKALA 102 (833)
Q Consensus 23 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~ 102 (833)
.....++.+++.+ +.+|..+. ++++.|+|++|+|+++.+..|.++++|++|+|++|.++ .++...|.++++|++|+
T Consensus 43 ~~~~~v~c~~~~l-~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~-~i~~~~~~~l~~L~~L~ 118 (440)
T 3zyj_A 43 NQFSKVICVRKNL-REVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR-TIEIGAFNGLANLNTLE 118 (440)
T ss_dssp TTSCEEECCSCCC-SSCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCC-EECGGGGTTCSSCCEEE
T ss_pred CCCCEEEeCCCCc-CcCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCC-ccChhhccCCccCCEEE
Confidence 3567888888888 45666555 68888888888888888888888888888888888887 77778888888888888
Q ss_pred ccCCcceeeCCccccCCCCCcEEEcccCccccccCcCccCCCcCceEeccc-ccCCCCCCCCcccccccCCCCCCCEEEc
Q 040925 103 IGGNNFFGSIPYSLSNASNLELLDLSVNQFKGNVSIDFSSLKNLLWLNLEQ-NNLGTGTATDLDFVTFLTNCSSLKALSL 181 (833)
Q Consensus 103 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~~~~l~~l~~L~~L~L 181 (833)
|++|+|+.+.+..|..+++|++|+|++|+|+.+++..|..+++|++|+|++ |.+..++. ..|.++++|++|+|
T Consensus 119 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~------~~~~~l~~L~~L~L 192 (440)
T 3zyj_A 119 LFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISE------GAFEGLSNLRYLNL 192 (440)
T ss_dssp CCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECT------TTTTTCSSCCEEEC
T ss_pred CCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCc------chhhcccccCeecC
Confidence 888888877777888888889999998888888888888888899998888 45544443 34678888999998
Q ss_pred cCCcCcccCChhHhhhcccccEEEccCccccccCChhhhcCCCCCeEeccCCcccccCCccccCCCCCCEEEcccccCcc
Q 040925 182 ADNQFGGELPHSIANLSSTVINFGIGRNQISGTIPPGIRNLVNLIGFGAEENQLHGTIPDAIGELKNLQKLCLFRNFLQG 261 (833)
Q Consensus 182 s~N~l~~~~p~~~~~l~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 261 (833)
++|+++ .+| .+..+++|+.|+|++|+++++.|..|.++++|++|+|++|.|++
T Consensus 193 ~~n~l~-~~~--------------------------~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 245 (440)
T 3zyj_A 193 AMCNLR-EIP--------------------------NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQV 245 (440)
T ss_dssp TTSCCS-SCC--------------------------CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCE
T ss_pred CCCcCc-ccc--------------------------ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeE
Confidence 888887 222 25677888888888888888888888899999999999999988
Q ss_pred cCCccccCCCCCCeEEeecccccCCCCCCCCCCCccceeecCCceec
Q 040925 262 RIPSGLGNLTKLANLELSSNSLQGNIPSSLGNCQNLMSFTASQNKLT 308 (833)
Q Consensus 262 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 308 (833)
+.+..|.++++|+.|+|++|+|++..+..|..+++|+.|+|++|.+.
T Consensus 246 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 246 IERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp ECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred EChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCcc
Confidence 88888889999999999999998888888888999999999999886
No 301
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.97 E-value=4.9e-31 Score=285.54 Aligned_cols=276 Identities=18% Similarity=0.164 Sum_probs=186.4
Q ss_pred EEEcCCCcCcccCCccccCCCCCCEEEccCCcccccCCccCCCCCCCCEEEcCCCcccccCCccccCCCCCcEEECCCcc
Q 040925 3 TLAVNDNYLTGQLPDFVGNLSDLEVIRIMGNSLGGKIPTTLGLLRNLVSLNVAENKFSGMFPRSICNISSLELIQLALNR 82 (833)
Q Consensus 3 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~ 82 (833)
..+++++.++ .+|..+. ++|++|++++|++++..+..|..+++|++|+|++|+++++.|.+|.++++|++|+|++|+
T Consensus 35 ~c~~~~~~l~-~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 111 (353)
T 2z80_A 35 ICKGSSGSLN-SIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNY 111 (353)
T ss_dssp EEECCSTTCS-SCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred EeeCCCCCcc-ccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCc
Confidence 4577788888 5666555 378888888888877666678888888888888888887777788888888888888888
Q ss_pred cccccCchhhcCCCCccEEEccCCcceeeCC-ccccCCCCCcEEEcccC-ccccccCcCccCCCcCceEecccccCCCCC
Q 040925 83 FSGNLPFDIVVNLPNLKALAIGGNNFFGSIP-YSLSNASNLELLDLSVN-QFKGNVSIDFSSLKNLLWLNLEQNNLGTGT 160 (833)
Q Consensus 83 l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N-~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 160 (833)
++ .+|...|.++++|++|+|++|+++...+ ..|.++++|++|++++| .+..+.+..|.++++|++|++++|.++...
T Consensus 112 l~-~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 190 (353)
T 2z80_A 112 LS-NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYE 190 (353)
T ss_dssp CS-SCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEEC
T ss_pred CC-cCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccC
Confidence 87 7777777888888888888888875444 46788888888888888 577777777888888888888888876543
Q ss_pred CCCcccccccCCCCCCCEEEccCCcCcccCChhHhhhcccccEEEccCccccccCChhhhcCCCCCeEeccCCcccccCC
Q 040925 161 ATDLDFVTFLTNCSSLKALSLADNQFGGELPHSIANLSSTVINFGIGRNQISGTIPPGIRNLVNLIGFGAEENQLHGTIP 240 (833)
Q Consensus 161 ~~~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 240 (833)
+ ..+.++++|++|++++|+++ .+|..+......++.|++++|.+++..+..+..
T Consensus 191 ~------~~l~~l~~L~~L~l~~n~l~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~------------------- 244 (353)
T 2z80_A 191 P------KSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDTDLDTFHFSELST------------------- 244 (353)
T ss_dssp T------TTTTTCSEEEEEEEECSCST-THHHHHHHHTTTEEEEEEESCBCTTCCCC-----------------------
T ss_pred H------HHHhccccCCeecCCCCccc-cchhhhhhhcccccEEECCCCcccccccccccc-------------------
Confidence 3 34667778888888888776 444444433334455555555554433322211
Q ss_pred ccccCCCCCCEEEcccccCcc----cCCccccCCCCCCeEEeecccccCCCCCCCCCCCccceeecCCceeccc
Q 040925 241 DAIGELKNLQKLCLFRNFLQG----RIPSGLGNLTKLANLELSSNSLQGNIPSSLGNCQNLMSFTASQNKLTGA 310 (833)
Q Consensus 241 ~~~~~l~~L~~L~L~~N~l~~----~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~ 310 (833)
......++.++|++|.+++ .+|..+..+++|++|+|++|+++...+..|..+++|+.|++++|.+.+.
T Consensus 245 --~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~ 316 (353)
T 2z80_A 245 --GETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 316 (353)
T ss_dssp ----CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred --ccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCc
Confidence 1123455566666655553 2445566666666666666666643333456666666666666666643
No 302
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.97 E-value=5.7e-31 Score=285.02 Aligned_cols=282 Identities=20% Similarity=0.208 Sum_probs=168.2
Q ss_pred CCCCCcEEECCCcccccccCchhhcCCCCccEEEccCCcceeeCCccccCCCCCcEEEcccCccccccCcCccCCCcCce
Q 040925 69 NISSLELIQLALNRFSGNLPFDIVVNLPNLKALAIGGNNFFGSIPYSLSNASNLELLDLSVNQFKGNVSIDFSSLKNLLW 148 (833)
Q Consensus 69 ~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~ 148 (833)
.++.....++++|.++ .+|..++ ++|++|+|++|.+++..+..|.++++|++|+|++|+|+++.+..|.++++|++
T Consensus 29 ~C~~~~~c~~~~~~l~-~iP~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 104 (353)
T 2z80_A 29 SCDRNGICKGSSGSLN-SIPSGLT---EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEH 104 (353)
T ss_dssp EECTTSEEECCSTTCS-SCCTTCC---TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred CCCCCeEeeCCCCCcc-ccccccc---ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCE
Confidence 3444455666666666 6665443 36666777777666655556667777777777777776666666666666666
Q ss_pred EecccccCCCCCCCCcccccccCCCCCCCEEEccCCcCcccCChhHhhhcccccEEEccCccccccCChhhhcCCCCCeE
Q 040925 149 LNLEQNNLGTGTATDLDFVTFLTNCSSLKALSLADNQFGGELPHSIANLSSTVINFGIGRNQISGTIPPGIRNLVNLIGF 228 (833)
Q Consensus 149 L~L~~N~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L 228 (833)
|+|++|+++.++. ..+.++++|++|+|++|+
T Consensus 105 L~Ls~n~l~~~~~------~~~~~l~~L~~L~L~~n~------------------------------------------- 135 (353)
T 2z80_A 105 LDLSYNYLSNLSS------SWFKPLSSLTFLNLLGNP------------------------------------------- 135 (353)
T ss_dssp EECCSSCCSSCCH------HHHTTCTTCSEEECTTCC-------------------------------------------
T ss_pred EECCCCcCCcCCH------hHhCCCccCCEEECCCCC-------------------------------------------
Confidence 6555555543221 113344444444444444
Q ss_pred eccCCcccccCC-ccccCCCCCCEEEcccc-cCcccCCccccCCCCCCeEEeecccccCCCCCCCCCCCccceeecCCce
Q 040925 229 GAEENQLHGTIP-DAIGELKNLQKLCLFRN-FLQGRIPSGLGNLTKLANLELSSNSLQGNIPSSLGNCQNLMSFTASQNK 306 (833)
Q Consensus 229 ~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 306 (833)
++++.+ ..|..+++|++|++++| .+.+..+..|.++++|++|++++|++++..|..|..+++|++|++++|+
T Consensus 136 ------l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 209 (353)
T 2z80_A 136 ------YKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQ 209 (353)
T ss_dssp ------CSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSC
T ss_pred ------CcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCc
Confidence 443322 34556666666666666 3555555566666666666666666666666666666666666666665
Q ss_pred ecccCCcccccccccceeeecCCCccCCCCCcccccCCCcCEEeccCCcCCCCCCccc---cCCCCCcEEeecCCcccc-
Q 040925 307 LTGALPHQLLSITTLSLYLDLSNNLLNGSLPLQVGHLKNLVILDISSNQFSGVIPGTL---STCVCLEYLDISSNSFHG- 382 (833)
Q Consensus 307 l~~~~p~~~~~~~~ll~~L~ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~---~~l~~L~~L~Ls~N~l~~- 382 (833)
++ .+|..+. ..+++|+.|++++|.+++..+..+ .....++.++|++|.+++
T Consensus 210 l~-~~~~~~~------------------------~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~ 264 (353)
T 2z80_A 210 HI-LLLEIFV------------------------DVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDE 264 (353)
T ss_dssp ST-THHHHHH------------------------HHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHH
T ss_pred cc-cchhhhh------------------------hhcccccEEECCCCccccccccccccccccchhhccccccccccCc
Confidence 54 3332222 223444444444444443333222 224456666666666654
Q ss_pred ---ccCccccCCCCCCeEEccCcccCCCchhhhcCCCCCceEECccCcCccccCC
Q 040925 383 ---VIPLSLSFLKSIKELNVSSNNLSGQIPEFLKNLSVLEFLSLSYNHFEGEVPT 434 (833)
Q Consensus 383 ---~~~~~~~~l~~L~~L~l~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~ 434 (833)
.+|..+..+++|+.|++++|+++...+..|..+++|++|++++|+++|.+|.
T Consensus 265 ~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~~~ 319 (353)
T 2z80_A 265 SLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 319 (353)
T ss_dssp HHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred chhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcCCC
Confidence 3466778888888888888888855544568888888899999988888873
No 303
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.97 E-value=4.3e-30 Score=286.78 Aligned_cols=246 Identities=22% Similarity=0.269 Sum_probs=181.6
Q ss_pred cEEEcCCCcCcccCCccccCCCCCCEEEccCCcccccCCccCCCCCCCCEEEcCCCcccccCCccccCCCCCcEEECCCc
Q 040925 2 QTLAVNDNYLTGQLPDFVGNLSDLEVIRIMGNSLGGKIPTTLGLLRNLVSLNVAENKFSGMFPRSICNISSLELIQLALN 81 (833)
Q Consensus 2 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N 81 (833)
++++.+++.++ .+|..+. ++++.|+|++|+|++..+..|..+++|++|+|++|+|+++.+.+|.++++|++|+|++|
T Consensus 46 ~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n 122 (440)
T 3zyj_A 46 SKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN 122 (440)
T ss_dssp CEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSS
T ss_pred CEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCC
Confidence 35667777777 5666555 47777777777777777777777777777777777777777777777777777777777
Q ss_pred ccccccCchhhcCCCCccEEEccCCcceeeCCccccCCCCCcEEEccc-CccccccCcCccCCCcCceEecccccCCCCC
Q 040925 82 RFSGNLPFDIVVNLPNLKALAIGGNNFFGSIPYSLSNASNLELLDLSV-NQFKGNVSIDFSSLKNLLWLNLEQNNLGTGT 160 (833)
Q Consensus 82 ~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~-N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 160 (833)
+++ .+|...|..+++|++|+|++|.|+.+.+..|.++++|++|+|++ |.+..+.+..|.++++|++|+|++|+++.++
T Consensus 123 ~l~-~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~ 201 (440)
T 3zyj_A 123 RLT-TIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP 201 (440)
T ss_dssp CCS-SCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCC
T ss_pred cCC-eeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcccc
Confidence 777 67777777777777777777777776677777777777777777 5566666667777777777777777776554
Q ss_pred CCCcccccccCCCCCCCEEEccCCcCcccCChhHhhhcccccEEEccCccccccCChhhhcCCCCCeEeccCCcccccCC
Q 040925 161 ATDLDFVTFLTNCSSLKALSLADNQFGGELPHSIANLSSTVINFGIGRNQISGTIPPGIRNLVNLIGFGAEENQLHGTIP 240 (833)
Q Consensus 161 ~~~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 240 (833)
. +..+++|++|+|++|++++ ..|..|.++++|+.|+|++|+++++.+
T Consensus 202 ~--------~~~l~~L~~L~Ls~N~l~~-------------------------~~~~~~~~l~~L~~L~L~~n~l~~~~~ 248 (440)
T 3zyj_A 202 N--------LTPLIKLDELDLSGNHLSA-------------------------IRPGSFQGLMHLQKLWMIQSQIQVIER 248 (440)
T ss_dssp C--------CTTCSSCCEEECTTSCCCE-------------------------ECTTTTTTCTTCCEEECTTCCCCEECT
T ss_pred c--------cCCCcccCEEECCCCccCc-------------------------cChhhhccCccCCEEECCCCceeEECh
Confidence 2 5666777777777776652 345566677777777777777777777
Q ss_pred ccccCCCCCCEEEcccccCcccCCccccCCCCCCeEEeeccccc
Q 040925 241 DAIGELKNLQKLCLFRNFLQGRIPSGLGNLTKLANLELSSNSLQ 284 (833)
Q Consensus 241 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 284 (833)
.+|.++++|++|+|++|.|++..+..|..+++|+.|+|++|.+.
T Consensus 249 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 249 NAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp TSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred hhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCcc
Confidence 77777777777777777777766677777777777777777765
No 304
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.97 E-value=5.5e-30 Score=286.92 Aligned_cols=246 Identities=22% Similarity=0.242 Sum_probs=180.2
Q ss_pred cEEEcCCCcCcccCCccccCCCCCCEEEccCCcccccCCccCCCCCCCCEEEcCCCcccccCCccccCCCCCcEEECCCc
Q 040925 2 QTLAVNDNYLTGQLPDFVGNLSDLEVIRIMGNSLGGKIPTTLGLLRNLVSLNVAENKFSGMFPRSICNISSLELIQLALN 81 (833)
Q Consensus 2 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N 81 (833)
+.++.++++++ .+|..+. ++|++|+|++|+|++..|..|..+++|++|+|++|+|+++.+..|.++++|++|+|++|
T Consensus 57 ~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n 133 (452)
T 3zyi_A 57 SKVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDN 133 (452)
T ss_dssp CEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred cEEEECCCCcC-ccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCC
Confidence 35667777777 5666554 47777777777777777777777777777777777777777777777777777777777
Q ss_pred ccccccCchhhcCCCCccEEEccCCcceeeCCccccCCCCCcEEEccc-CccccccCcCccCCCcCceEecccccCCCCC
Q 040925 82 RFSGNLPFDIVVNLPNLKALAIGGNNFFGSIPYSLSNASNLELLDLSV-NQFKGNVSIDFSSLKNLLWLNLEQNNLGTGT 160 (833)
Q Consensus 82 ~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~-N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 160 (833)
+++ .+|...|.++++|++|+|++|.|+.+.+..|.++++|++|+|++ |.+..+++..|.++++|++|+|++|+++.++
T Consensus 134 ~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~ 212 (452)
T 3zyi_A 134 WLT-VIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP 212 (452)
T ss_dssp CCS-BCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCC
T ss_pred cCC-ccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccc
Confidence 776 67777777777777777777777766666777777777777777 5666666667777777777777777776543
Q ss_pred CCCcccccccCCCCCCCEEEccCCcCcccCChhHhhhcccccEEEccCccccccCChhhhcCCCCCeEeccCCcccccCC
Q 040925 161 ATDLDFVTFLTNCSSLKALSLADNQFGGELPHSIANLSSTVINFGIGRNQISGTIPPGIRNLVNLIGFGAEENQLHGTIP 240 (833)
Q Consensus 161 ~~~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 240 (833)
. +..+++|++|+|++|++++ ..|..|.++++|+.|+|++|++.++.+
T Consensus 213 ~--------~~~l~~L~~L~Ls~N~l~~-------------------------~~~~~~~~l~~L~~L~L~~n~l~~~~~ 259 (452)
T 3zyi_A 213 N--------LTPLVGLEELEMSGNHFPE-------------------------IRPGSFHGLSSLKKLWVMNSQVSLIER 259 (452)
T ss_dssp C--------CTTCTTCCEEECTTSCCSE-------------------------ECGGGGTTCTTCCEEECTTSCCCEECT
T ss_pred c--------ccccccccEEECcCCcCcc-------------------------cCcccccCccCCCEEEeCCCcCceECH
Confidence 2 5566777777777776652 345556667777777777777777777
Q ss_pred ccccCCCCCCEEEcccccCcccCCccccCCCCCCeEEeeccccc
Q 040925 241 DAIGELKNLQKLCLFRNFLQGRIPSGLGNLTKLANLELSSNSLQ 284 (833)
Q Consensus 241 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 284 (833)
..|.++++|++|+|++|.|++..+..|..+++|+.|+|++|.+.
T Consensus 260 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 260 NAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp TTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEE
T ss_pred HHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcC
Confidence 77777777777777777777666667777777777777777765
No 305
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.97 E-value=5.1e-31 Score=279.47 Aligned_cols=277 Identities=21% Similarity=0.251 Sum_probs=179.9
Q ss_pred ceEecccccCCCCCCCCcccccccCCCCCCCEEEccCCcCcccCChhHhhhcccccEEEccCccccccCChhhhcCCCCC
Q 040925 147 LWLNLEQNNLGTGTATDLDFVTFLTNCSSLKALSLADNQFGGELPHSIANLSSTVINFGIGRNQISGTIPPGIRNLVNLI 226 (833)
Q Consensus 147 ~~L~L~~N~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~l~~L~l~~n~i~~~~~~~~~~l~~L~ 226 (833)
+.++++++.++.++.. + .++|++|+|++|+++ .+| +..|.++++|+
T Consensus 10 ~~l~c~~~~l~~ip~~-------~--~~~l~~L~L~~n~l~-~i~------------------------~~~~~~l~~L~ 55 (306)
T 2z66_A 10 TEIRCNSKGLTSVPTG-------I--PSSATRLELESNKLQ-SLP------------------------HGVFDKLTQLT 55 (306)
T ss_dssp TEEECCSSCCSSCCSC-------C--CTTCCEEECCSSCCC-CCC------------------------TTTTTTCTTCS
T ss_pred CEEEcCCCCcccCCCC-------C--CCCCCEEECCCCccC-ccC------------------------HhHhhccccCC
Confidence 4567777777665542 1 145666666666666 333 33345555555
Q ss_pred eEeccCCccccc--CCccccCCCCCCEEEcccccCcccCCccccCCCCCCeEEeecccccCCCC-CCCCCCCccceeecC
Q 040925 227 GFGAEENQLHGT--IPDAIGELKNLQKLCLFRNFLQGRIPSGLGNLTKLANLELSSNSLQGNIP-SSLGNCQNLMSFTAS 303 (833)
Q Consensus 227 ~L~L~~N~l~~~--~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~l~ 303 (833)
+|+|++|++... .+..+.++++|++|+|++|.++ .+|..+.++++|++|++++|++++..+ ..+..+++|+.|+++
T Consensus 56 ~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~ 134 (306)
T 2z66_A 56 KLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDIS 134 (306)
T ss_dssp EEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECT
T ss_pred EEECCCCccCcccCcccccccccccCEEECCCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECC
Confidence 555555555422 1344445555555555555555 244445555555555555555554433 345555555555555
Q ss_pred CceecccCCcccccccccceeeecCCCccCC-CCCcccccCCCcCEEeccCCcCCCCCCccccCCCCCcEEeecCCcccc
Q 040925 304 QNKLTGALPHQLLSITTLSLYLDLSNNLLNG-SLPLQVGHLKNLVILDISSNQFSGVIPGTLSTCVCLEYLDISSNSFHG 382 (833)
Q Consensus 304 ~N~l~~~~p~~~~~~~~ll~~L~ls~N~l~~-~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 382 (833)
+|.+++..|..+..+..+ ++|++++|.+++ ..|..|..+++|++|++++|.+++..|..|..+++|++|+|++|++++
T Consensus 135 ~n~l~~~~~~~~~~l~~L-~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 213 (306)
T 2z66_A 135 HTHTRVAFNGIFNGLSSL-EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFS 213 (306)
T ss_dssp TSCCEECSTTTTTTCTTC-CEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSB
T ss_pred CCcCCccchhhcccCcCC-CEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCc
Confidence 555554444444444444 556666666554 456777888888888888888888878888888888888888888887
Q ss_pred ccCccccCCCCCCeEEccCcccCCCchhhhcCCC-CCceEECccCcCccccCCC---CccCCCccccccCCcCCCCCccc
Q 040925 383 VIPLSLSFLKSIKELNVSSNNLSGQIPEFLKNLS-VLEFLSLSYNHFEGEVPTK---GVFSNKTKISLQGNMKLCGGIDE 458 (833)
Q Consensus 383 ~~~~~~~~l~~L~~L~l~~N~l~~~~p~~l~~l~-~L~~L~l~~N~l~~~~~~~---~~~~~~~~l~l~~N~~~c~~~~~ 458 (833)
..+..+..+++|+.|++++|++++..|..+..++ +|+.|++++|+|+|.++.. ..+.....+....+...|..|..
T Consensus 214 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~~C~~p~~ 293 (306)
T 2z66_A 214 LDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSD 293 (306)
T ss_dssp CCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGGHHHHHHHHHTGGGBSCGGGCBEEESGG
T ss_pred cChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccChHHHHHHHHhhhhhhccccccccCCchh
Confidence 7777888888889999999988888888888884 8889999999998877642 11233344555667777876654
Q ss_pred C
Q 040925 459 L 459 (833)
Q Consensus 459 ~ 459 (833)
.
T Consensus 294 ~ 294 (306)
T 2z66_A 294 K 294 (306)
T ss_dssp G
T ss_pred h
Confidence 3
No 306
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.97 E-value=3.2e-30 Score=273.31 Aligned_cols=249 Identities=22% Similarity=0.253 Sum_probs=143.1
Q ss_pred CEEEccCCcccccCCccCCCCCCCCEEEcCCCcccccCCccccCCCCCcEEECCCcccccccC--chhhcCCCCccEEEc
Q 040925 26 EVIRIMGNSLGGKIPTTLGLLRNLVSLNVAENKFSGMFPRSICNISSLELIQLALNRFSGNLP--FDIVVNLPNLKALAI 103 (833)
Q Consensus 26 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~--~~~~~~l~~L~~L~L 103 (833)
+.++.+++.+ +.+|..+. ++|++|+|++|+++.+.+..|.++++|++|+|++|+++ .+. ...+.++++|++|+|
T Consensus 10 ~~l~c~~~~l-~~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~~~~~~L~~L~L 85 (306)
T 2z66_A 10 TEIRCNSKGL-TSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLS-FKGCCSQSDFGTTSLKYLDL 85 (306)
T ss_dssp TEEECCSSCC-SSCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-EEEEEEHHHHSCSCCCEEEC
T ss_pred CEEEcCCCCc-ccCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccC-cccCcccccccccccCEEEC
Confidence 3455555555 33343332 45555666666655444444555666666666666554 221 122335566666666
Q ss_pred cCCcceeeCCccccCCCCCcEEEcccCccccccC-cCccCCCcCceEecccccCCCCCCCCcccccccCCCCCCCEEEcc
Q 040925 104 GGNNFFGSIPYSLSNASNLELLDLSVNQFKGNVS-IDFSSLKNLLWLNLEQNNLGTGTATDLDFVTFLTNCSSLKALSLA 182 (833)
Q Consensus 104 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~l~~L~~L~Ls 182 (833)
++|.++ .+|..|.++++|++|+|++|+++++.+ ..|..+++|++|++++|.++.... ..+.++++|++|+|+
T Consensus 86 s~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~------~~~~~l~~L~~L~l~ 158 (306)
T 2z66_A 86 SFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFN------GIFNGLSSLEVLKMA 158 (306)
T ss_dssp CSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECST------TTTTTCTTCCEEECT
T ss_pred CCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccch------hhcccCcCCCEEECC
Confidence 666665 344445666666666666666665554 456666666666666666554332 235556666666666
Q ss_pred CCcCcccCChhHhhhcccccEEEccCccccccCChhhhcCCCCCeEeccCCcccccCCccccCCCCCCEEEcccccCccc
Q 040925 183 DNQFGGELPHSIANLSSTVINFGIGRNQISGTIPPGIRNLVNLIGFGAEENQLHGTIPDAIGELKNLQKLCLFRNFLQGR 262 (833)
Q Consensus 183 ~N~l~~~~p~~~~~l~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 262 (833)
+|++++. ..|..|..+++|++|++++|++++..|..|..+++|++|+|++|.+++.
T Consensus 159 ~n~l~~~------------------------~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 214 (306)
T 2z66_A 159 GNSFQEN------------------------FLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSL 214 (306)
T ss_dssp TCEEGGG------------------------EECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBC
T ss_pred CCccccc------------------------cchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCcc
Confidence 6666520 2334455556666666666666665566666666666666666666655
Q ss_pred CCccccCCCCCCeEEeecccccCCCCCCCCCCC-ccceeecCCceecc
Q 040925 263 IPSGLGNLTKLANLELSSNSLQGNIPSSLGNCQ-NLMSFTASQNKLTG 309 (833)
Q Consensus 263 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~-~L~~L~l~~N~l~~ 309 (833)
.+..|..+++|++|+|++|++++..|..+..++ +|+.|++++|.+++
T Consensus 215 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~ 262 (306)
T 2z66_A 215 DTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC 262 (306)
T ss_dssp CSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEEC
T ss_pred ChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeec
Confidence 555566666666666666666666666666663 66666666666653
No 307
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.97 E-value=6.2e-30 Score=268.03 Aligned_cols=253 Identities=21% Similarity=0.218 Sum_probs=126.2
Q ss_pred EEEcCCCcCcccCCccccCCCCCCEEEccCCcccccCCccCCCCCCCCEEEcCCCcccccCCccccCCCCCcEEECCCcc
Q 040925 3 TLAVNDNYLTGQLPDFVGNLSDLEVIRIMGNSLGGKIPTTLGLLRNLVSLNVAENKFSGMFPRSICNISSLELIQLALNR 82 (833)
Q Consensus 3 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~ 82 (833)
++++++++++ .+|..+ .++|++|++++|++++..+..|..+++|++|+|++|.++++.|.+|.++++|++|+|++|+
T Consensus 15 ~~~c~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 91 (285)
T 1ozn_A 15 TTSCPQQGLQ-AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91 (285)
T ss_dssp EEECCSSCCS-SCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCT
T ss_pred EEEcCcCCcc-cCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCC
Confidence 4555555555 344333 2355555555555555444555555555555555555555545555555555555555554
Q ss_pred -cccccCchhhcCCCCccEEEccCCcceeeCCccccCCCCCcEEEcccCccccccCcCccCCCcCceEecccccCCCCCC
Q 040925 83 -FSGNLPFDIVVNLPNLKALAIGGNNFFGSIPYSLSNASNLELLDLSVNQFKGNVSIDFSSLKNLLWLNLEQNNLGTGTA 161 (833)
Q Consensus 83 -l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 161 (833)
+. .+++..|..+++|++|+|++|.+++..|..|.++++|++|+|++|+++.+++..|..
T Consensus 92 ~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~------------------- 151 (285)
T 1ozn_A 92 QLR-SVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRD------------------- 151 (285)
T ss_dssp TCC-CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT-------------------
T ss_pred Ccc-ccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhcc-------------------
Confidence 43 444444455555555555555555444444555555555555555555444444444
Q ss_pred CCcccccccCCCCCCCEEEccCCcCcccCChhHhhhcccccEEEccCccccccCChhhhcCCCCCeEeccCCcccccCCc
Q 040925 162 TDLDFVTFLTNCSSLKALSLADNQFGGELPHSIANLSSTVINFGIGRNQISGTIPPGIRNLVNLIGFGAEENQLHGTIPD 241 (833)
Q Consensus 162 ~~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 241 (833)
+++|++|+|++|++++ ..+..|.++++|+.|++++|++.+..|.
T Consensus 152 -----------l~~L~~L~l~~n~l~~-------------------------~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 195 (285)
T 1ozn_A 152 -----------LGNLTHLFLHGNRISS-------------------------VPERAFRGLHSLDRLLLHQNRVAHVHPH 195 (285)
T ss_dssp -----------CTTCCEEECCSSCCCE-------------------------ECTTTTTTCTTCCEEECCSSCCCEECTT
T ss_pred -----------CCCccEEECCCCcccc-------------------------cCHHHhcCccccCEEECCCCcccccCHh
Confidence 4455555555554441 1222344444555555555555555555
Q ss_pred cccCCCCCCEEEcccccCcccCCccccCCCCCCeEEeecccccCCCCCCCCCCCccceeecCCceecccCCccc
Q 040925 242 AIGELKNLQKLCLFRNFLQGRIPSGLGNLTKLANLELSSNSLQGNIPSSLGNCQNLMSFTASQNKLTGALPHQL 315 (833)
Q Consensus 242 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~ 315 (833)
.|..+++|++|+|++|.+++..+..|..+++|+.|+|++|.+....+. ..-...++.+..+.+.+....|..+
T Consensus 196 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~-~~~~~~l~~~~~~~~~~~c~~p~~l 268 (285)
T 1ozn_A 196 AFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRA-RPLWAWLQKFRGSSSEVPCSLPQRL 268 (285)
T ss_dssp TTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGG-HHHHHHHHHCCSEECCCBEEESGGG
T ss_pred HccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCc-HHHHHHHHhcccccCccccCCchHh
Confidence 555555555555555555544444455555555555555555422211 0111234444445555554455443
No 308
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.97 E-value=7e-30 Score=267.65 Aligned_cols=254 Identities=24% Similarity=0.213 Sum_probs=172.0
Q ss_pred CEEEccCCcCcccCChhHhhhcccccEEEccCccccccCChhhhcCCCCCeEeccCCcccccCCccccCCCCCCEEEccc
Q 040925 177 KALSLADNQFGGELPHSIANLSSTVINFGIGRNQISGTIPPGIRNLVNLIGFGAEENQLHGTIPDAIGELKNLQKLCLFR 256 (833)
Q Consensus 177 ~~L~Ls~N~l~~~~p~~~~~l~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 256 (833)
+.++++++.++ .+|..+ ...++.|++++|.+++..+..|.++++|++|++++|+++++.|..|.++++|++|+|++
T Consensus 14 ~~~~c~~~~l~-~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 89 (285)
T 1ozn_A 14 VTTSCPQQGLQ-AVPVGI---PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD 89 (285)
T ss_dssp CEEECCSSCCS-SCCTTC---CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred eEEEcCcCCcc-cCCcCC---CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCC
Confidence 56777777776 445432 23344555555555544444455555555555555555544444555555555555555
Q ss_pred cc-CcccCCccccCCCCCCeEEeecccccCCCCCCCCCCCccceeecCCceecccCCcccccccccceeeecCCCccCCC
Q 040925 257 NF-LQGRIPSGLGNLTKLANLELSSNSLQGNIPSSLGNCQNLMSFTASQNKLTGALPHQLLSITTLSLYLDLSNNLLNGS 335 (833)
Q Consensus 257 N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~ll~~L~ls~N~l~~~ 335 (833)
|. ++...|..|..+++|++|+|++|++++..|..|.++++| ++|++++|.+++.
T Consensus 90 n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L-------------------------~~L~l~~n~l~~~ 144 (285)
T 1ozn_A 90 NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAAL-------------------------QYLYLQDNALQAL 144 (285)
T ss_dssp CTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTC-------------------------CEEECCSSCCCCC
T ss_pred CCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCC-------------------------CEEECCCCccccc
Confidence 54 443334444455555555555555544444444444444 4555666666655
Q ss_pred CCcccccCCCcCEEeccCCcCCCCCCccccCCCCCcEEeecCCccccccCccccCCCCCCeEEccCcccCCCchhhhcCC
Q 040925 336 LPLQVGHLKNLVILDISSNQFSGVIPGTLSTCVCLEYLDISSNSFHGVIPLSLSFLKSIKELNVSSNNLSGQIPEFLKNL 415 (833)
Q Consensus 336 ~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~l~~l 415 (833)
.+..|+.+++|++|+|++|++++..+..|..+++|++|+|++|++++..|..|..+++|+.|++++|++++..+..+..+
T Consensus 145 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 224 (285)
T 1ozn_A 145 PDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPL 224 (285)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTC
T ss_pred CHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccC
Confidence 56678889999999999999998878889999999999999999998888899999999999999999998888889999
Q ss_pred CCCceEECccCcCccccCCCCccCCCccccccCCcCCCCCcccC
Q 040925 416 SVLEFLSLSYNHFEGEVPTKGVFSNKTKISLQGNMKLCGGIDEL 459 (833)
Q Consensus 416 ~~L~~L~l~~N~l~~~~~~~~~~~~~~~l~l~~N~~~c~~~~~~ 459 (833)
++|+.|++++|++.|.++..+.+..+..+....+...|..|...
T Consensus 225 ~~L~~L~l~~N~~~c~~~~~~~~~~l~~~~~~~~~~~c~~p~~l 268 (285)
T 1ozn_A 225 RALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPCSLPQRL 268 (285)
T ss_dssp TTCCEEECCSSCEECSGGGHHHHHHHHHCCSEECCCBEEESGGG
T ss_pred cccCEEeccCCCccCCCCcHHHHHHHHhcccccCccccCCchHh
Confidence 99999999999999988765444445555667777888776654
No 309
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.96 E-value=1.5e-30 Score=292.90 Aligned_cols=242 Identities=20% Similarity=0.155 Sum_probs=162.7
Q ss_pred cccEEEccCccccccCChhhhcCCCCCeEeccCCcccccCCccccCCCCCCEEEcccccCcccCCccccCCCCCCeEEee
Q 040925 200 TVINFGIGRNQISGTIPPGIRNLVNLIGFGAEENQLHGTIPDAIGELKNLQKLCLFRNFLQGRIPSGLGNLTKLANLELS 279 (833)
Q Consensus 200 ~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 279 (833)
.++.|++++|.|++..|..|.++++|++|+|++|.+++..| |..+++|++|+|++|.|++..+ .++|++|+|+
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~L~L~ 107 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIETLHAA 107 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-----CTTCCEEECC
T ss_pred CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-----CCCcCEEECc
Confidence 45556666666666666677777777777777777776554 7777777777777777774322 2677777777
Q ss_pred cccccCCCCCCCCCCCccceeecCCceecccCCcccccccccceeeecCCCccCCCCCcccc-cCCCcCEEeccCCcCCC
Q 040925 280 SNSLQGNIPSSLGNCQNLMSFTASQNKLTGALPHQLLSITTLSLYLDLSNNLLNGSLPLQVG-HLKNLVILDISSNQFSG 358 (833)
Q Consensus 280 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~ll~~L~ls~N~l~~~~~~~~~-~l~~L~~L~ls~N~l~~ 358 (833)
+|.|++..+.. +++|+.|++++|.+++..|..+..+..+ ++|+|++|.+++..|..|. .+++|+.|+|++|.|++
T Consensus 108 ~N~l~~~~~~~---l~~L~~L~L~~N~l~~~~~~~~~~l~~L-~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~ 183 (487)
T 3oja_A 108 NNNISRVSCSR---GQGKKNIYLANNKITMLRDLDEGCRSRV-QYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD 183 (487)
T ss_dssp SSCCCCEEECC---CSSCEEEECCSSCCCSGGGBCGGGGSSE-EEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE
T ss_pred CCcCCCCCccc---cCCCCEEECCCCCCCCCCchhhcCCCCC-CEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccc
Confidence 77777655443 4667777777777776666666666666 6777777777766666665 67778888888887775
Q ss_pred CCCccccCCCCCcEEeecCCccccccCccccCCCCCCeEEccCcccCCCchhhhcCCCCCceEECccCcCccccC--CCC
Q 040925 359 VIPGTLSTCVCLEYLDISSNSFHGVIPLSLSFLKSIKELNVSSNNLSGQIPEFLKNLSVLEFLSLSYNHFEGEVP--TKG 436 (833)
Q Consensus 359 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~--~~~ 436 (833)
..+ +..+++|+.|+|++|+|++++| .+..+++|+.|+|++|.+++ +|..+..+++|+.|++++|++.|..+ ..+
T Consensus 184 ~~~--~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~ 259 (487)
T 3oja_A 184 VKG--QVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFS 259 (487)
T ss_dssp EEC--CCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHT
T ss_pred ccc--cccCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHH
Confidence 532 3347777888888887776544 47777778888888887774 56667777777788888887774322 123
Q ss_pred ccCCCcccccc-------CCcCCCCCc
Q 040925 437 VFSNKTKISLQ-------GNMKLCGGI 456 (833)
Q Consensus 437 ~~~~~~~l~l~-------~N~~~c~~~ 456 (833)
.+..+..+.+. +|++.|..+
T Consensus 260 ~l~~L~~l~~~~~~~~~~~~~~~c~~~ 286 (487)
T 3oja_A 260 KNQRVQTVAKQTVKKLTGQNEEECTVP 286 (487)
T ss_dssp TCHHHHHHHHHHHHHHTSSSSCCCSST
T ss_pred hCCCCcEEeccccccccCCCcccccCC
Confidence 34444444443 566666553
No 310
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.96 E-value=3e-28 Score=279.23 Aligned_cols=84 Identities=29% Similarity=0.310 Sum_probs=51.4
Q ss_pred eeecCCCccCCCCCcccccCCCcCEEeccCCcCCCCCCccccCCCCCcEEeecCCccccccCccccCCCCCCeEEccCcc
Q 040925 324 YLDLSNNLLNGSLPLQVGHLKNLVILDISSNQFSGVIPGTLSTCVCLEYLDISSNSFHGVIPLSLSFLKSIKELNVSSNN 403 (833)
Q Consensus 324 ~L~ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~ 403 (833)
+|++++|.|++ +| ..+++|+.|+|++|.|+.+ |. .+++|+.|+|++|+|+ .+|..+..+++|+.|+|++|+
T Consensus 225 ~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~~l-p~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~ 295 (622)
T 3g06_A 225 ELIVSGNRLTS-LP---VLPSELKELMVSGNRLTSL-PM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNP 295 (622)
T ss_dssp EEECCSSCCSC-CC---CCCTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCC
T ss_pred EEEccCCccCc-CC---CCCCcCcEEECCCCCCCcC-Cc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCC
Confidence 44444444442 23 2346677777777777643 33 4566777777777777 445667777777777777777
Q ss_pred cCCCchhhhcCCC
Q 040925 404 LSGQIPEFLKNLS 416 (833)
Q Consensus 404 l~~~~p~~l~~l~ 416 (833)
+++..|..+..++
T Consensus 296 l~~~~~~~l~~L~ 308 (622)
T 3g06_A 296 LSERTLQALREIT 308 (622)
T ss_dssp CCHHHHHHHHHHH
T ss_pred CCCcCHHHHHhcc
Confidence 7766666665544
No 311
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.96 E-value=1.1e-30 Score=277.77 Aligned_cols=256 Identities=18% Similarity=0.203 Sum_probs=155.1
Q ss_pred EEcCCCcCcccCCccccCCCCCCEEEccCCcccccCCccCCCCCCCCEEEcCCCcccccCCccccCCCCCcEEECCCccc
Q 040925 4 LAVNDNYLTGQLPDFVGNLSDLEVIRIMGNSLGGKIPTTLGLLRNLVSLNVAENKFSGMFPRSICNISSLELIQLALNRF 83 (833)
Q Consensus 4 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l 83 (833)
++++++.+...++..+..+++|++|+|++|++++..|..|+.+++|++|+|++|++++..+ |.++++|++|+|++|++
T Consensus 15 ~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l 92 (317)
T 3o53_A 15 EKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYV 92 (317)
T ss_dssp ESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEE
T ss_pred eeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcc
Confidence 3444555554444445555566666666666655555566666666666666666654333 66666666666666666
Q ss_pred ccccCchhhcCCCCccEEEccCCcceeeCCccccCCCCCcEEEcccCccccccCcCccCCCcCceEecccccCCCCCCCC
Q 040925 84 SGNLPFDIVVNLPNLKALAIGGNNFFGSIPYSLSNASNLELLDLSVNQFKGNVSIDFSSLKNLLWLNLEQNNLGTGTATD 163 (833)
Q Consensus 84 ~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 163 (833)
+ .++ ..++|++|++++|++++..+.. +++|++|+|++|+++++.+..|..+++|++|+|++|.++.+...
T Consensus 93 ~-~l~-----~~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~- 162 (317)
T 3o53_A 93 Q-ELL-----VGPSIETLHAANNNISRVSCSR---GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFA- 162 (317)
T ss_dssp E-EEE-----ECTTCCEEECCSSCCSEEEECC---CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGG-
T ss_pred c-ccc-----CCCCcCEEECCCCccCCcCccc---cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHH-
Confidence 5 333 2256666666666665544433 34566666666666666555666666666666666665543221
Q ss_pred cccccccCCCCCCCEEEccCCcCcccCChhHhhhcccccEEEccCccccccCChhhhcCCCCCeEeccCCcccccCCccc
Q 040925 164 LDFVTFLTNCSSLKALSLADNQFGGELPHSIANLSSTVINFGIGRNQISGTIPPGIRNLVNLIGFGAEENQLHGTIPDAI 243 (833)
Q Consensus 164 ~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 243 (833)
..+..+++|++|+|++|+++ +. .....+++|++|+|++|+++++.+ .|
T Consensus 163 ----~~~~~l~~L~~L~L~~N~l~-------------------------~~--~~~~~l~~L~~L~Ls~N~l~~l~~-~~ 210 (317)
T 3o53_A 163 ----ELAASSDTLEHLNLQYNFIY-------------------------DV--KGQVVFAKLKTLDLSSNKLAFMGP-EF 210 (317)
T ss_dssp ----GGGGGTTTCCEEECTTSCCC-------------------------EE--ECCCCCTTCCEEECCSSCCCEECG-GG
T ss_pred ----HHhhccCcCCEEECCCCcCc-------------------------cc--ccccccccCCEEECCCCcCCcchh-hh
Confidence 11234555666666666554 22 112236677777777777775444 37
Q ss_pred cCCCCCCEEEcccccCcccCCccccCCCCCCeEEeeccccc-CCCCCCCCCCCccceeecCC
Q 040925 244 GELKNLQKLCLFRNFLQGRIPSGLGNLTKLANLELSSNSLQ-GNIPSSLGNCQNLMSFTASQ 304 (833)
Q Consensus 244 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~ 304 (833)
..+++|++|+|++|.|+ .+|..+..+++|+.|+|++|++. +..|..+..+++|+.|++++
T Consensus 211 ~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~ 271 (317)
T 3o53_A 211 QSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQT 271 (317)
T ss_dssp GGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHH
T ss_pred cccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCC
Confidence 77777777777777777 35666777777777777777776 56666777777777777763
No 312
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.96 E-value=4.1e-28 Score=278.14 Aligned_cols=261 Identities=25% Similarity=0.283 Sum_probs=146.8
Q ss_pred CcEEEcCCCcCcccCCccccCCCCCCEEEccCCcccccCCccCCCCCCCCEEEcCCCcccccCCccccCCCCCcEEECCC
Q 040925 1 LQTLAVNDNYLTGQLPDFVGNLSDLEVIRIMGNSLGGKIPTTLGLLRNLVSLNVAENKFSGMFPRSICNISSLELIQLAL 80 (833)
Q Consensus 1 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~ 80 (833)
+++|++++|.++ .+|..+. ++|++|++++|+|+ .+|. .+++|++|+|++|+|++ +|. .+++|++|+|++
T Consensus 42 l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~ 110 (622)
T 3g06_A 42 NAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLTS-LPV---LPPGLLELSIFS 110 (622)
T ss_dssp CCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCSC-CCC---CCTTCCEEEECS
T ss_pred CcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCCc-CCC---CCCCCCEEECcC
Confidence 356777777777 5666554 57777777777774 3444 45677777777777763 443 566777777777
Q ss_pred cccccccCchhhcCCCCccEEEccCCcceeeCCccccCCCCCcEEEcccCccccccCcCccCCCcCceEecccccCCCCC
Q 040925 81 NRFSGNLPFDIVVNLPNLKALAIGGNNFFGSIPYSLSNASNLELLDLSVNQFKGNVSIDFSSLKNLLWLNLEQNNLGTGT 160 (833)
Q Consensus 81 N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 160 (833)
|+++ .+|. .+++|+.|+|++|+|+. +|.. +++|++|+|++|+|++++. .+++|+.|++++|.|+.++
T Consensus 111 N~l~-~l~~----~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~l~~----~~~~L~~L~L~~N~l~~l~ 177 (622)
T 3g06_A 111 NPLT-HLPA----LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLASLPA----LPSELCKLWAYNNQLTSLP 177 (622)
T ss_dssp CCCC-CCCC----CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSCCC
T ss_pred CcCC-CCCC----CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCCcCC----ccCCCCEEECCCCCCCCCc
Confidence 7776 5554 45667777777777764 4433 3667777777777765542 2456777777777776544
Q ss_pred CCCcccccccCCCCCCCEEEccCCcCcccCChhHhhhcccccEEEccCccccccCChhhhcCCCCCeEeccCCcccccCC
Q 040925 161 ATDLDFVTFLTNCSSLKALSLADNQFGGELPHSIANLSSTVINFGIGRNQISGTIPPGIRNLVNLIGFGAEENQLHGTIP 240 (833)
Q Consensus 161 ~~~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 240 (833)
..+++|+.|+|++|+++ .+|.. ...++.|++++|.++.+ |. .+++|+.|++++|+|++ +|
T Consensus 178 ----------~~~~~L~~L~Ls~N~l~-~l~~~----~~~L~~L~L~~N~l~~l-~~---~~~~L~~L~Ls~N~L~~-lp 237 (622)
T 3g06_A 178 ----------MLPSGLQELSVSDNQLA-SLPTL----PSELYKLWAYNNRLTSL-PA---LPSGLKELIVSGNRLTS-LP 237 (622)
T ss_dssp ----------CCCTTCCEEECCSSCCS-CCCCC----CTTCCEEECCSSCCSSC-CC---CCTTCCEEECCSSCCSC-CC
T ss_pred ----------ccCCCCcEEECCCCCCC-CCCCc----cchhhEEECcCCccccc-CC---CCCCCCEEEccCCccCc-CC
Confidence 13466777777777766 23322 13344555555555422 21 12445555555555543 22
Q ss_pred ccccCCCCCCEEEcccccCcccCCccccCCCCCCeEEeecccccCCCCCCCCCCCccceeecCCceecccCCc
Q 040925 241 DAIGELKNLQKLCLFRNFLQGRIPSGLGNLTKLANLELSSNSLQGNIPSSLGNCQNLMSFTASQNKLTGALPH 313 (833)
Q Consensus 241 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~ 313 (833)
..+++|++|+|++|.|+. +|. .+++|+.|+|++|+|+ .+|..|.++++|+.|++++|.+++..|.
T Consensus 238 ---~~l~~L~~L~Ls~N~L~~-lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~ 302 (622)
T 3g06_A 238 ---VLPSELKELMVSGNRLTS-LPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQ 302 (622)
T ss_dssp ---CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHH
T ss_pred ---CCCCcCcEEECCCCCCCc-CCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHH
Confidence 233445555555555542 222 3344555555555554 3344455555555555555554443333
No 313
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.96 E-value=1.9e-31 Score=310.57 Aligned_cols=407 Identities=13% Similarity=0.107 Sum_probs=269.9
Q ss_pred CCccccCCCCCCEEEccCCcc---cccCCccCC------------CCCCCCEEEcCCCcccccCCccccCC--CCCcEEE
Q 040925 15 LPDFVGNLSDLEVIRIMGNSL---GGKIPTTLG------------LLRNLVSLNVAENKFSGMFPRSICNI--SSLELIQ 77 (833)
Q Consensus 15 ~~~~~~~l~~L~~L~l~~n~l---~~~~~~~~~------------~l~~L~~L~L~~n~i~~~~~~~~~~l--~~L~~L~ 77 (833)
.+..+..+++|+.|+++++.. .+.+|..++ .+++|++|+|++|.+++..+..+... .+|++|+
T Consensus 65 ~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~ 144 (592)
T 3ogk_B 65 PDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLK 144 (592)
T ss_dssp HHHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEE
T ss_pred hHHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEE
Confidence 344566777888888877543 133444444 67888888888888876666666653 3488888
Q ss_pred CCCcc-cccccCchhhcCCCCccEEEccCCcceee----CCccccCCCCCcEEEcccCccccccC----cCccCCCcCce
Q 040925 78 LALNR-FSGNLPFDIVVNLPNLKALAIGGNNFFGS----IPYSLSNASNLELLDLSVNQFKGNVS----IDFSSLKNLLW 148 (833)
Q Consensus 78 L~~N~-l~~~~~~~~~~~l~~L~~L~L~~N~l~~~----~~~~~~~l~~L~~L~L~~N~i~~~~~----~~~~~l~~L~~ 148 (833)
|++|. ++..--..+..++++|++|+|++|.+++. ++..+..+++|++|+|++|.++++.. ..+..+++|++
T Consensus 145 L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~ 224 (592)
T 3ogk_B 145 LDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVS 224 (592)
T ss_dssp EESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCE
T ss_pred CcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcE
Confidence 88876 22111122345778888888888887654 23345667888888888888874333 23456788888
Q ss_pred EecccccCCCCCCCCcccccccCCCCCCCEEEccCCcCc---ccCChhHhhhcccccEEEccCccccccCChhhhcCCCC
Q 040925 149 LNLEQNNLGTGTATDLDFVTFLTNCSSLKALSLADNQFG---GELPHSIANLSSTVINFGIGRNQISGTIPPGIRNLVNL 225 (833)
Q Consensus 149 L~L~~N~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~---~~~p~~~~~l~~~l~~L~l~~n~i~~~~~~~~~~l~~L 225 (833)
|+|++|.+.. .+..+.++++|++|+++++... ...+..+..+ ..++.+++.++.. ...|..+..+++|
T Consensus 225 L~L~~~~~~~-------l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~-~~L~~L~l~~~~~-~~l~~~~~~~~~L 295 (592)
T 3ogk_B 225 VKVGDFEILE-------LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFP-RKLCRLGLSYMGP-NEMPILFPFAAQI 295 (592)
T ss_dssp EECSSCBGGG-------GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCC-TTCCEEEETTCCT-TTGGGGGGGGGGC
T ss_pred EeccCccHHH-------HHHHHhhhhHHHhhcccccccccchHHHHHHhhcc-ccccccCccccch-hHHHHHHhhcCCC
Confidence 8888887754 2345677788888888754332 1222233333 3466777776533 3566777788888
Q ss_pred CeEeccCCcccccCC-ccccCCCCCCEEEcccccCcccCCccccCCCCCCeEEeec-----------ccccCC-CCCCCC
Q 040925 226 IGFGAEENQLHGTIP-DAIGELKNLQKLCLFRNFLQGRIPSGLGNLTKLANLELSS-----------NSLQGN-IPSSLG 292 (833)
Q Consensus 226 ~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~-----------N~l~~~-~~~~~~ 292 (833)
++|+|++|.+++... ..+..+++|++|+|+++...+.++..+..+++|++|+|++ |.++.. .+..+.
T Consensus 296 ~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~ 375 (592)
T 3ogk_B 296 RKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQ 375 (592)
T ss_dssp CEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHH
T ss_pred cEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHh
Confidence 888888888765433 3467888888888883332222333445678888888883 555533 222244
Q ss_pred CCCccceeecCCceecccCCccccc-ccccceeeecC----CCccCCC-----CCcccccCCCcCEEeccCCc--CCCCC
Q 040925 293 NCQNLMSFTASQNKLTGALPHQLLS-ITTLSLYLDLS----NNLLNGS-----LPLQVGHLKNLVILDISSNQ--FSGVI 360 (833)
Q Consensus 293 ~l~~L~~L~l~~N~l~~~~p~~~~~-~~~ll~~L~ls----~N~l~~~-----~~~~~~~l~~L~~L~ls~N~--l~~~~ 360 (833)
.+++|+.|+++.|.+++..+..+.. ++.+ +.|+++ .|.+++. ++..+.++++|+.|++++|. +++..
T Consensus 376 ~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L-~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~ 454 (592)
T 3ogk_B 376 GCQELEYMAVYVSDITNESLESIGTYLKNL-CDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLG 454 (592)
T ss_dssp HCTTCSEEEEEESCCCHHHHHHHHHHCCSC-CEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHH
T ss_pred hCccCeEEEeecCCccHHHHHHHHhhCCCC-cEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHH
Confidence 5788888888888887666655555 4444 778885 6777753 22336678899999997533 55444
Q ss_pred Ccccc-CCCCCcEEeecCCccccc-cCccccCCCCCCeEEccCcccCCC-chhhhcCCCCCceEECccCcCccc
Q 040925 361 PGTLS-TCVCLEYLDISSNSFHGV-IPLSLSFLKSIKELNVSSNNLSGQ-IPEFLKNLSVLEFLSLSYNHFEGE 431 (833)
Q Consensus 361 ~~~~~-~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~l~~N~l~~~-~p~~l~~l~~L~~L~l~~N~l~~~ 431 (833)
+..+. .+++|++|+|++|++++. .+..+..+++|+.|++++|.+++. ++..+..+++|+.|++++|+++..
T Consensus 455 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~ 528 (592)
T 3ogk_B 455 LSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMT 528 (592)
T ss_dssp HHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTT
T ss_pred HHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHH
Confidence 44443 478899999999988753 344557788999999999998654 344556788999999999987754
No 314
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.96 E-value=2.8e-28 Score=260.06 Aligned_cols=212 Identities=20% Similarity=0.294 Sum_probs=166.6
Q ss_pred cCChhhhcCCCCCeEeccCCcccccCCccccCCCCCCEEEcccccCcccCCccccCCCCCCeEEeecccccCCCCCCCCC
Q 040925 214 TIPPGIRNLVNLIGFGAEENQLHGTIPDAIGELKNLQKLCLFRNFLQGRIPSGLGNLTKLANLELSSNSLQGNIPSSLGN 293 (833)
Q Consensus 214 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 293 (833)
.+|..+..+++|++|+|++|++. .+|..|+.+++|++|+|++|.++ .+|..|.++++|++|+|++|++.+.+|..+..
T Consensus 95 ~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~ 172 (328)
T 4fcg_A 95 QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLAS 172 (328)
T ss_dssp SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEE
T ss_pred hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhh
Confidence 44555556666777777777776 56666677777777777777776 55666777777777777776666666665543
Q ss_pred ---------CCccceeecCCceecccCCcccccccccceeeecCCCccCCCCCcccccCCCcCEEeccCCcCCCCCCccc
Q 040925 294 ---------CQNLMSFTASQNKLTGALPHQLLSITTLSLYLDLSNNLLNGSLPLQVGHLKNLVILDISSNQFSGVIPGTL 364 (833)
Q Consensus 294 ---------l~~L~~L~l~~N~l~~~~p~~~~~~~~ll~~L~ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~ 364 (833)
+++|+.|++++|+++ .+|..+..+..+ ++|++++|.+++ +|..+..+++|++|+|++|.+.+..|..|
T Consensus 173 ~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L-~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~ 249 (328)
T 4fcg_A 173 TDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNL-KSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIF 249 (328)
T ss_dssp EC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTC-CEEEEESSCCCC-CCGGGGGCTTCCEEECTTCTTCCBCCCCT
T ss_pred ccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCC-CEEEccCCCCCc-CchhhccCCCCCEEECcCCcchhhhHHHh
Confidence 777777777777777 677777777666 678888888874 55678889999999999999988899999
Q ss_pred cCCCCCcEEeecCCccccccCccccCCCCCCeEEccCcccCCCchhhhcCCCCCceEECccCcCcc
Q 040925 365 STCVCLEYLDISSNSFHGVIPLSLSFLKSIKELNVSSNNLSGQIPEFLKNLSVLEFLSLSYNHFEG 430 (833)
Q Consensus 365 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~ 430 (833)
..+++|++|+|++|++.+..|..+..+++|+.|+|++|++.+.+|..+.++++|+.+++..|.+..
T Consensus 250 ~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~~ 315 (328)
T 4fcg_A 250 GGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQ 315 (328)
T ss_dssp TCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSCC
T ss_pred cCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHHH
Confidence 999999999999999888889889999999999999999999999999999999999998877654
No 315
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.96 E-value=5.7e-30 Score=271.72 Aligned_cols=249 Identities=21% Similarity=0.199 Sum_probs=194.1
Q ss_pred cCCCCCCCEEEccCCcCcccCChhHhhhcccccEEEccCcccc-ccCChhhh-------cCCCCCeEeccCCcccccCCc
Q 040925 170 LTNCSSLKALSLADNQFGGELPHSIANLSSTVINFGIGRNQIS-GTIPPGIR-------NLVNLIGFGAEENQLHGTIPD 241 (833)
Q Consensus 170 l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~l~~L~l~~n~i~-~~~~~~~~-------~l~~L~~L~L~~N~l~~~~~~ 241 (833)
+++.++|++|++++|.+ .+|..+... ++.|++++|++. ...|..+. ++++|++|+|++|++++..|.
T Consensus 39 ~~~~~~L~~l~l~~n~l--~~p~~~~~~---L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 113 (312)
T 1wwl_A 39 YGGGRSLEYLLKRVDTE--ADLGQFTDI---IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPP 113 (312)
T ss_dssp EEEEEECTTHHHHCCTT--CCCHHHHHH---HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCC
T ss_pred EccCCCceeEeeccccc--ccHHHHHHH---HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHH
Confidence 34455666667777776 566665554 556677777773 34555554 788999999999999888887
Q ss_pred cc--cCCCCCCEEEcccccCcccCCccccCC-----CCCCeEEeecccccCCCCCCCCCCCccceeecCCceeccc--CC
Q 040925 242 AI--GELKNLQKLCLFRNFLQGRIPSGLGNL-----TKLANLELSSNSLQGNIPSSLGNCQNLMSFTASQNKLTGA--LP 312 (833)
Q Consensus 242 ~~--~~l~~L~~L~L~~N~l~~~~~~~~~~l-----~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~--~p 312 (833)
.+ ..+++|++|+|++|.+++. |..+..+ ++|++|+|++|++.+..|..|+.+++|++|++++|++.+. +|
T Consensus 114 ~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 192 (312)
T 1wwl_A 114 PLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLI 192 (312)
T ss_dssp CSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHH
T ss_pred HHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHH
Confidence 76 8899999999999999876 7777776 8999999999999988888899999999999999987654 23
Q ss_pred ccc--ccccccceeeecCCCccCCC---CCcccccCCCcCEEeccCCcCCCCCC-ccccCCCCCcEEeecCCccccccCc
Q 040925 313 HQL--LSITTLSLYLDLSNNLLNGS---LPLQVGHLKNLVILDISSNQFSGVIP-GTLSTCVCLEYLDISSNSFHGVIPL 386 (833)
Q Consensus 313 ~~~--~~~~~ll~~L~ls~N~l~~~---~~~~~~~l~~L~~L~ls~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~ 386 (833)
..+ ..+..+ ++|++++|.+++. ....+.++++|++|+|++|++++..| ..+..+++|++|+|++|+|+ .+|.
T Consensus 193 ~~~~~~~l~~L-~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~ 270 (312)
T 1wwl_A 193 SALCPLKFPTL-QVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPK 270 (312)
T ss_dssp HHSCTTSCTTC-CEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCS
T ss_pred HHHHhccCCCC-CEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhh
Confidence 333 455555 7899999988732 22345678999999999999988765 56777899999999999998 4555
Q ss_pred cccCCCCCCeEEccCcccCCCchhhhcCCCCCceEECccCcCcc
Q 040925 387 SLSFLKSIKELNVSSNNLSGQIPEFLKNLSVLEFLSLSYNHFEG 430 (833)
Q Consensus 387 ~~~~l~~L~~L~l~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~ 430 (833)
.+. ++|+.|+|++|+|++. |. +..+++|++|++++|+|++
T Consensus 271 ~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 271 GLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp SCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred hcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 555 8899999999999876 55 8899999999999999875
No 316
>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*
Probab=99.96 E-value=1.3e-29 Score=288.99 Aligned_cols=193 Identities=13% Similarity=-0.013 Sum_probs=134.3
Q ss_pred eeccCcceEEEEEEECCCceEEEEEEeeccCC----------cchhHHHHHHHHHhhc-CCCccceEeeEeecCCCCCCc
Q 040925 538 MIGQGSFGYVYKGTLGEDEMIVAVKVINLKYK----------GASRSFVAECEALRNI-RHRNLIKIITICSSTDFKGTD 606 (833)
Q Consensus 538 ~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~----------~~~~~~~~E~~~l~~l-~h~niv~~~~~~~~~~~~~~~ 606 (833)
..+.|+.|.+..++....|+.||||++..... ...+++.+|+++|+++ .|+||+++++++.+..
T Consensus 241 ~~~~~~~~~h~~~rr~~fg~~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~~~~~~ed~~----- 315 (569)
T 4azs_A 241 QPYAGAGLAHKRSRRYFFGEDYVCKFFYYDMPHGILTAEESQRNKYELHNEIKFLTQPPAGFDAPAVLAHGENAQ----- 315 (569)
T ss_dssp C-C--------CCEEEEECSSEEEEEEESSCSTTCSCHHHHHHHHHHHHHHHHHHHSCCTTCCCCCEEEEEECSS-----
T ss_pred ccccCCcccccccccccccceeEEEEEecccccccchhhhhHHHHHHHHHHHHHHHhcCCCCCeeEEEEEEEECC-----
Confidence 45667777777766666788899999964321 1235699999999999 6999999999976554
Q ss_pred eEeEEEEecCCCChhhhhccCCCccccccCCHHHHHHHHHHHHHHHHHHhhcCCCCceeeCCCCCCeeecCCCcEEEccc
Q 040925 607 FKAFVFEYMENGSLKDWLHQSDDQVEVCKLSLIQRVNIAIDVASAMEYLHHHCQPPMVHGDLKPSNVLLDHDMVAHVCDF 686 (833)
Q Consensus 607 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~gL~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kL~Df 686 (833)
..||||||++||+|.++|...+ +++.. +|+.||+.||+|+|++ |||||||||+|||++++|.+||+||
T Consensus 316 ~~yLVMEyv~G~~L~d~i~~~~------~l~~~---~I~~QIl~AL~ylH~~---GIIHRDIKPeNILL~~dg~vKL~DF 383 (569)
T 4azs_A 316 SGWLVMEKLPGRLLSDMLAAGE------EIDRE---KILGSLLRSLAALEKQ---GFWHDDVRPWNVMVDARQHARLIDF 383 (569)
T ss_dssp EEEEEEECCCSEEHHHHHHTTC------CCCHH---HHHHHHHHHHHHHHHT---TCEESCCCGGGEEECTTSCEEECCC
T ss_pred EEEEEEecCCCCcHHHHHHhCC------CCCHH---HHHHHHHHHHHHHHHC---CceeccCchHhEEECCCCCEEEeec
Confidence 8999999999999999998765 56554 4889999999999999 9999999999999999999999999
Q ss_pred ccccccCcccccccccCCCccccccccccccCccccCCCCCCcccccccCCcCCCccccCCccHHHHHHH
Q 040925 687 GLAKFLSDHQLDTAVKTPSSSIGLKGTVGYVAPEYGMGSEASMTGDIFTGRRPIDAVFNEGHSLHEFAKT 756 (833)
Q Consensus 687 G~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~s~~~~~~~~~~~g~~l~~~~~~ 756 (833)
|+|+....... .....+||+.|||||++.+ .+..++|+|+.++..++++..+..+......
T Consensus 384 GlAr~~~~~~~--------~~~t~vGTp~YmAPE~l~g-~~~~~~d~~s~g~~~~~l~~~~~~~~~~l~~ 444 (569)
T 4azs_A 384 GSIVTTPQDCS--------WPTNLVQSFFVFVNELFAE-NKSWNGFWRSAPVHPFNLPQPWSNWLYAVWQ 444 (569)
T ss_dssp TTEESCC---C--------CSHHHHHHHHHHHHHHC------------------CCCCTTHHHHHHHHHT
T ss_pred ccCeeCCCCCc--------cccCceechhhccHHHhCC-CCCCcccccccccchhhhccccchhHHHhhc
Confidence 99987654321 2234679999999999876 4677899999998888887766555554443
No 317
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.96 E-value=3.6e-30 Score=273.92 Aligned_cols=264 Identities=20% Similarity=0.160 Sum_probs=141.1
Q ss_pred EEECCCcccccccCchhhcCCCCccEEEccCCcceeeCCccccCCCCCcEEEcccCccccccCcCccCCCcCceEecccc
Q 040925 75 LIQLALNRFSGNLPFDIVVNLPNLKALAIGGNNFFGSIPYSLSNASNLELLDLSVNQFKGNVSIDFSSLKNLLWLNLEQN 154 (833)
Q Consensus 75 ~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N 154 (833)
.++++.+.+. ..+..++..+++|++|+|++|.+++..|..|.++++|++|+|++|+++++.+ |..+++|++|+|++|
T Consensus 14 i~~ls~~~l~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n 90 (317)
T 3o53_A 14 IEKVTDSSLK-QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNN 90 (317)
T ss_dssp EESCCTTTHH-HHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSS
T ss_pred Eeeccccchh-hhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCC
Confidence 3344445554 3444445555555555555555554444555555555555555555554433 555555555555555
Q ss_pred cCCCCCCCCcccccccCCCCCCCEEEccCCcCcccCChhHhhhcccccEEEccCccccccCChhhhcCCCCCeEeccCCc
Q 040925 155 NLGTGTATDLDFVTFLTNCSSLKALSLADNQFGGELPHSIANLSSTVINFGIGRNQISGTIPPGIRNLVNLIGFGAEENQ 234 (833)
Q Consensus 155 ~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~N~ 234 (833)
.++.++ ..++|++|++++|++++..+. .+++|+.|++++|+
T Consensus 91 ~l~~l~-----------~~~~L~~L~l~~n~l~~~~~~----------------------------~~~~L~~L~l~~N~ 131 (317)
T 3o53_A 91 YVQELL-----------VGPSIETLHAANNNISRVSCS----------------------------RGQGKKNIYLANNK 131 (317)
T ss_dssp EEEEEE-----------ECTTCCEEECCSSCCSEEEEC----------------------------CCSSCEEEECCSSC
T ss_pred cccccc-----------CCCCcCEEECCCCccCCcCcc----------------------------ccCCCCEEECCCCC
Confidence 543211 224566666666655521111 12345555555555
Q ss_pred ccccCCccccCCCCCCEEEcccccCcccCCcccc-CCCCCCeEEeecccccCCCCCCCCCCCccceeecCCceecccCCc
Q 040925 235 LHGTIPDAIGELKNLQKLCLFRNFLQGRIPSGLG-NLTKLANLELSSNSLQGNIPSSLGNCQNLMSFTASQNKLTGALPH 313 (833)
Q Consensus 235 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~ 313 (833)
+++..+..|..+++|++|+|++|.+++..+..+. .+++|++|+|++|+|++. +. ...+++|++|++++|+++
T Consensus 132 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~----- 204 (317)
T 3o53_A 132 ITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLA----- 204 (317)
T ss_dssp CCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCC-----
T ss_pred CCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-cc-ccccccCCEEECCCCcCC-----
Confidence 5555555555555666666666666554444442 455566666666655533 11 122444444444444443
Q ss_pred ccccccccceeeecCCCccCCCCCcccccCCCcCEEeccCCcCCCCCCccccCCCCCcEEeecCCccc-cccCccccCCC
Q 040925 314 QLLSITTLSLYLDLSNNLLNGSLPLQVGHLKNLVILDISSNQFSGVIPGTLSTCVCLEYLDISSNSFH-GVIPLSLSFLK 392 (833)
Q Consensus 314 ~~~~~~~ll~~L~ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~ 392 (833)
+ +|..|..+++|++|+|++|++++ +|..+..+++|+.|++++|++. +..+..+..++
T Consensus 205 --------------------~-l~~~~~~l~~L~~L~L~~N~l~~-l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~ 262 (317)
T 3o53_A 205 --------------------F-MGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQ 262 (317)
T ss_dssp --------------------E-ECGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCH
T ss_pred --------------------c-chhhhcccCcccEEECcCCcccc-hhhHhhcCCCCCEEEccCCCccCcCHHHHHhccc
Confidence 2 22235556667777777777763 4555666777777777777776 55566667777
Q ss_pred CCCeEEcc-CcccCCCch
Q 040925 393 SIKELNVS-SNNLSGQIP 409 (833)
Q Consensus 393 ~L~~L~l~-~N~l~~~~p 409 (833)
+|+.|+++ .+.+++..|
T Consensus 263 ~L~~l~l~~~~~l~~~~~ 280 (317)
T 3o53_A 263 RVQTVAKQTVKKLTGQNE 280 (317)
T ss_dssp HHHHHHHHHHHHHHSSSS
T ss_pred cceEEECCCchhccCCch
Confidence 77777776 334554443
No 318
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.95 E-value=1.7e-30 Score=302.44 Aligned_cols=418 Identities=15% Similarity=0.096 Sum_probs=306.5
Q ss_pred CcEEEcCCCcC---cccCCcccc------------CCCCCCEEEccCCcccccCCccCCCC--CCCCEEEcCCCc-ccc-
Q 040925 1 LQTLAVNDNYL---TGQLPDFVG------------NLSDLEVIRIMGNSLGGKIPTTLGLL--RNLVSLNVAENK-FSG- 61 (833)
Q Consensus 1 L~~L~l~~n~l---~~~~~~~~~------------~l~~L~~L~l~~n~l~~~~~~~~~~l--~~L~~L~L~~n~-i~~- 61 (833)
|++|+|+++.. .+.+|..++ .+++|++|+|++|.+++..+..+... .+|++|+|++|. ++.
T Consensus 75 L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~ 154 (592)
T 3ogk_B 75 LRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTD 154 (592)
T ss_dssp CSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHH
T ss_pred CeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHH
Confidence 57888877543 134444444 78999999999999987777777663 459999999997 321
Q ss_pred cCCccccCCCCCcEEECCCcccccccC---chhhcCCCCccEEEccCCcce----eeCCccccCCCCCcEEEcccCcccc
Q 040925 62 MFPRSICNISSLELIQLALNRFSGNLP---FDIVVNLPNLKALAIGGNNFF----GSIPYSLSNASNLELLDLSVNQFKG 134 (833)
Q Consensus 62 ~~~~~~~~l~~L~~L~L~~N~l~~~~~---~~~~~~l~~L~~L~L~~N~l~----~~~~~~~~~l~~L~~L~L~~N~i~~ 134 (833)
.++..+.++++|++|+|++|.+++.-. ...+..+++|++|+|++|.++ ...+..+.++++|++|+|++|.+.+
T Consensus 155 ~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~ 234 (592)
T 3ogk_B 155 GLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE 234 (592)
T ss_dssp HHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG
T ss_pred HHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH
Confidence 122334588999999999999874311 134568999999999999997 3445556789999999999999997
Q ss_pred ccCcCccCCCcCceEecccccCCCCCCCCcccccccCCCCCCCEEEccCCcCcccCChhHhhhcccccEEEccCcccccc
Q 040925 135 NVSIDFSSLKNLLWLNLEQNNLGTGTATDLDFVTFLTNCSSLKALSLADNQFGGELPHSIANLSSTVINFGIGRNQISGT 214 (833)
Q Consensus 135 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~l~~L~l~~n~i~~~ 214 (833)
++ ..+..+++|++|+++.+...... ......+..+++|+.|+++++... .+|..+..++ .++.|++++|.+++.
T Consensus 235 l~-~~~~~~~~L~~L~l~~~~~~~~~---~~~~~~l~~~~~L~~L~l~~~~~~-~l~~~~~~~~-~L~~L~Ls~~~l~~~ 308 (592)
T 3ogk_B 235 LV-GFFKAAANLEEFCGGSLNEDIGM---PEKYMNLVFPRKLCRLGLSYMGPN-EMPILFPFAA-QIRKLDLLYALLETE 308 (592)
T ss_dssp GH-HHHHHCTTCCEEEECBCCCCTTC---TTSSSCCCCCTTCCEEEETTCCTT-TGGGGGGGGG-GCCEEEETTCCCCHH
T ss_pred HH-HHHhhhhHHHhhcccccccccch---HHHHHHhhccccccccCccccchh-HHHHHHhhcC-CCcEEecCCCcCCHH
Confidence 55 67899999999999864332111 122345778899999999997544 6666665554 589999999998755
Q ss_pred CC-hhhhcCCCCCeEeccCCcccc-cCCccccCCCCCCEEEcc-----------cccCcccCC-ccccCCCCCCeEEeec
Q 040925 215 IP-PGIRNLVNLIGFGAEENQLHG-TIPDAIGELKNLQKLCLF-----------RNFLQGRIP-SGLGNLTKLANLELSS 280 (833)
Q Consensus 215 ~~-~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~-----------~N~l~~~~~-~~~~~l~~L~~L~L~~ 280 (833)
.. ..+..+++|+.|+++ |.+.. .++..+..+++|++|+|+ .|.+++... ..+..+++|++|+++.
T Consensus 309 ~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~ 387 (592)
T 3ogk_B 309 DHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYV 387 (592)
T ss_dssp HHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEE
T ss_pred HHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeec
Confidence 44 446899999999999 44443 344455778999999999 366664322 2244689999999999
Q ss_pred ccccCCCCCCCCC-CCccceeecC----Cceeccc-----CCcccccccccceeeecCCCc--cCCCCCcccc-cCCCcC
Q 040925 281 NSLQGNIPSSLGN-CQNLMSFTAS----QNKLTGA-----LPHQLLSITTLSLYLDLSNNL--LNGSLPLQVG-HLKNLV 347 (833)
Q Consensus 281 N~l~~~~~~~~~~-l~~L~~L~l~----~N~l~~~-----~p~~~~~~~~ll~~L~ls~N~--l~~~~~~~~~-~l~~L~ 347 (833)
|++++..+..+.. +++|+.|+++ .|.+++. ++..+..+..+ ++|++++|. +++..+..+. .+++|+
T Consensus 388 ~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L-~~L~L~~~~~~l~~~~~~~~~~~~~~L~ 466 (592)
T 3ogk_B 388 SDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKL-RRFAFYLRQGGLTDLGLSYIGQYSPNVR 466 (592)
T ss_dssp SCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTC-CEEEEECCGGGCCHHHHHHHHHSCTTCC
T ss_pred CCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCC-CEEEEecCCCCccHHHHHHHHHhCccce
Confidence 9998766666665 8899999996 7788742 33335556666 789997544 5544444443 489999
Q ss_pred EEeccCCcCCC-CCCccccCCCCCcEEeecCCccccc-cCccccCCCCCCeEEccCcccCCCchhhh-cCCCCCceEECc
Q 040925 348 ILDISSNQFSG-VIPGTLSTCVCLEYLDISSNSFHGV-IPLSLSFLKSIKELNVSSNNLSGQIPEFL-KNLSVLEFLSLS 424 (833)
Q Consensus 348 ~L~ls~N~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~l~~N~l~~~~p~~l-~~l~~L~~L~l~ 424 (833)
.|++++|++++ ..+..+.++++|++|+|++|.+++. .+..+..+++|+.|+|++|+++..-...+ ..++.+....+.
T Consensus 467 ~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~~~~p~l~~~~~~ 546 (592)
T 3ogk_B 467 WMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIP 546 (592)
T ss_dssp EEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGGGGCCTTEEEEEEC
T ss_pred EeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHHHHHHHHhCCCcEEEEec
Confidence 99999999986 3345568899999999999998754 34445678999999999999987544333 356666665555
Q ss_pred cC
Q 040925 425 YN 426 (833)
Q Consensus 425 ~N 426 (833)
.+
T Consensus 547 ~~ 548 (592)
T 3ogk_B 547 SR 548 (592)
T ss_dssp CC
T ss_pred Cc
Confidence 44
No 319
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.95 E-value=3.4e-30 Score=273.47 Aligned_cols=248 Identities=21% Similarity=0.241 Sum_probs=113.0
Q ss_pred CCCCCCCEEEcCCCcccccCCccccCCCCCcEEECCCcccc-cccCchhh------cCCCCccEEEccCCcceeeCCccc
Q 040925 44 GLLRNLVSLNVAENKFSGMFPRSICNISSLELIQLALNRFS-GNLPFDIV------VNLPNLKALAIGGNNFFGSIPYSL 116 (833)
Q Consensus 44 ~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~------~~l~~L~~L~L~~N~l~~~~~~~~ 116 (833)
+..++|++|++++|.+ ..|..+... |+.|+|++|+++ ..+|...+ .++++|++|+|++|++++..|..+
T Consensus 40 ~~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 115 (312)
T 1wwl_A 40 GGGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPL 115 (312)
T ss_dssp EEEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCS
T ss_pred ccCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHH
Confidence 3444555555555555 334433332 555555555553 12332221 135555555555555554455443
Q ss_pred --cCCCCCcEEEcccCccccccCcCccCC-----CcCceEecccccCCCCCCCCcccccccCCCCCCCEEEccCCcCccc
Q 040925 117 --SNASNLELLDLSVNQFKGNVSIDFSSL-----KNLLWLNLEQNNLGTGTATDLDFVTFLTNCSSLKALSLADNQFGGE 189 (833)
Q Consensus 117 --~~l~~L~~L~L~~N~i~~~~~~~~~~l-----~~L~~L~L~~N~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~~~ 189 (833)
..+++|++|+|++|+|+++ +..|..+ ++|++|+|++|+++.++.. .+.++++|++|+|++|++.+.
T Consensus 116 ~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~------~~~~l~~L~~L~Ls~N~l~~~ 188 (312)
T 1wwl_A 116 LEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCE------QVRVFPALSTLDLSDNPELGE 188 (312)
T ss_dssp SSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTT------TCCCCSSCCEEECCSCTTCHH
T ss_pred HHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHH------HhccCCCCCEEECCCCCcCcc
Confidence 5555555555555555554 4444444 5555555555555544332 244555555555555554422
Q ss_pred C--ChhH--hhhcccccEEEccCcccc---ccCChhhhcCCCCCeEeccCCcccccCC-ccccCCCCCCEEEcccccCcc
Q 040925 190 L--PHSI--ANLSSTVINFGIGRNQIS---GTIPPGIRNLVNLIGFGAEENQLHGTIP-DAIGELKNLQKLCLFRNFLQG 261 (833)
Q Consensus 190 ~--p~~~--~~l~~~l~~L~l~~n~i~---~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~ 261 (833)
+ |..+ ..+ ..++.|++++|+|+ ......+.++++|+.|++++|++++..| ..+..+++|++|+|++|.|+
T Consensus 189 ~~~~~~~~~~~l-~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~- 266 (312)
T 1wwl_A 189 RGLISALCPLKF-PTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK- 266 (312)
T ss_dssp HHHHHHSCTTSC-TTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-
T ss_pred hHHHHHHHhccC-CCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-
Confidence 1 1111 000 01111111122111 0111223344555555555555554443 33444555555555555555
Q ss_pred cCCccccCCCCCCeEEeecccccCCCCCCCCCCCccceeecCCceec
Q 040925 262 RIPSGLGNLTKLANLELSSNSLQGNIPSSLGNCQNLMSFTASQNKLT 308 (833)
Q Consensus 262 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 308 (833)
.+|..+. ++|++|+|++|+|++. |. +..+++|+.|++++|+++
T Consensus 267 ~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~ 309 (312)
T 1wwl_A 267 QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFL 309 (312)
T ss_dssp SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTT
T ss_pred hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCC
Confidence 3444433 4555555555555533 33 555555555555555444
No 320
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.95 E-value=1.2e-27 Score=255.20 Aligned_cols=185 Identities=22% Similarity=0.243 Sum_probs=123.9
Q ss_pred hhhcCCCCCeEeccCCcccccCCccccCCCCCCEEEcccccCcccCCcccc---------CCCCCCeEEeecccccCCCC
Q 040925 218 GIRNLVNLIGFGAEENQLHGTIPDAIGELKNLQKLCLFRNFLQGRIPSGLG---------NLTKLANLELSSNSLQGNIP 288 (833)
Q Consensus 218 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~---------~l~~L~~L~L~~N~l~~~~~ 288 (833)
.|+++++|++|+|++|+++ .+|..|..+++|++|+|++|.+.+.+|..+. ++++|++|+|++|+++ .+|
T Consensus 122 ~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp 199 (328)
T 4fcg_A 122 TMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLP 199 (328)
T ss_dssp CGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCC
T ss_pred HHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cch
Confidence 3334444444444444444 3344444444444444444444444444333 3666666666666666 555
Q ss_pred CCCCCCCccceeecCCceecccCCcccccccccceeeecCCCccCCCCCcccccCCCcCEEeccCCcCCCCCCccccCCC
Q 040925 289 SSLGNCQNLMSFTASQNKLTGALPHQLLSITTLSLYLDLSNNLLNGSLPLQVGHLKNLVILDISSNQFSGVIPGTLSTCV 368 (833)
Q Consensus 289 ~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~ll~~L~ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~ 368 (833)
..+..+++|+.|++++|+++ .+|..+..+..+ ++|++++|.+.+.+|..|+.+++|++|+|++|.+.+..|..|..++
T Consensus 200 ~~l~~l~~L~~L~L~~N~l~-~l~~~l~~l~~L-~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~ 277 (328)
T 4fcg_A 200 ASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKL-EELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLT 277 (328)
T ss_dssp GGGGGCTTCCEEEEESSCCC-CCCGGGGGCTTC-CEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCT
T ss_pred HhhcCCCCCCEEEccCCCCC-cCchhhccCCCC-CEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCC
Confidence 55666666666666666666 455555555555 5677777777777788888888888999988888888888888888
Q ss_pred CCcEEeecCCccccccCccccCCCCCCeEEccCcccCC
Q 040925 369 CLEYLDISSNSFHGVIPLSLSFLKSIKELNVSSNNLSG 406 (833)
Q Consensus 369 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~ 406 (833)
+|++|+|++|++.+.+|..+..+++|+.+++..|.+..
T Consensus 278 ~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~~ 315 (328)
T 4fcg_A 278 QLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQ 315 (328)
T ss_dssp TCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSCC
T ss_pred CCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHHH
Confidence 89999999888888888888888889888888777653
No 321
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.94 E-value=6.4e-28 Score=271.45 Aligned_cols=244 Identities=18% Similarity=0.215 Sum_probs=189.0
Q ss_pred CCCEEEccCCcCcccCChhHhhhcccccEEEccCccccccCChhhhcCCCCCeEeccCCcccccCCccccCCCCCCEEEc
Q 040925 175 SLKALSLADNQFGGELPHSIANLSSTVINFGIGRNQISGTIPPGIRNLVNLIGFGAEENQLHGTIPDAIGELKNLQKLCL 254 (833)
Q Consensus 175 ~L~~L~Ls~N~l~~~~p~~~~~l~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 254 (833)
+|++|+|++|.+++..|..+..++ .++.|++++|.+++..| |..+++|++|+|++|.++++.+ .++|++|+|
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~L~L 106 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFT-KLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIETLHA 106 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCT-TCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-----CTTCCEEEC
T ss_pred CccEEEeeCCcCCCCCHHHHhCCC-CCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-----CCCcCEEEC
Confidence 344444444444433333333332 24444444444444443 7788899999999999986543 378999999
Q ss_pred ccccCcccCCccccCCCCCCeEEeecccccCCCCCCCCCCCccceeecCCceecccCCcccc-cccccceeeecCCCccC
Q 040925 255 FRNFLQGRIPSGLGNLTKLANLELSSNSLQGNIPSSLGNCQNLMSFTASQNKLTGALPHQLL-SITTLSLYLDLSNNLLN 333 (833)
Q Consensus 255 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~-~~~~ll~~L~ls~N~l~ 333 (833)
++|.|++..+. .+++|+.|+|++|++++..|..|..+++|+.|++++|.+++..|..+. .+..+ ++|+|++|.++
T Consensus 107 ~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L-~~L~Ls~N~l~ 182 (487)
T 3oja_A 107 ANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTL-EHLNLQYNFIY 182 (487)
T ss_dssp CSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTC-CEEECTTSCCC
T ss_pred cCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcc-cEEecCCCccc
Confidence 99999876554 357899999999999988888999999999999999999987787776 45555 88999999998
Q ss_pred CCCCcccccCCCcCEEeccCCcCCCCCCccccCCCCCcEEeecCCccccccCccccCCCCCCeEEccCcccC-CCchhhh
Q 040925 334 GSLPLQVGHLKNLVILDISSNQFSGVIPGTLSTCVCLEYLDISSNSFHGVIPLSLSFLKSIKELNVSSNNLS-GQIPEFL 412 (833)
Q Consensus 334 ~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~p~~l 412 (833)
+.. .+..+++|+.|+|++|.|++++|. |..+++|+.|+|++|+|++ +|..+..+++|+.|++++|.++ +.+|..+
T Consensus 183 ~~~--~~~~l~~L~~L~Ls~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~ 258 (487)
T 3oja_A 183 DVK--GQVVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFF 258 (487)
T ss_dssp EEE--CCCCCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHH
T ss_pred ccc--ccccCCCCCEEECCCCCCCCCCHh-HcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHH
Confidence 653 344699999999999999976555 9999999999999999996 5667999999999999999998 6778889
Q ss_pred cCCCCCceEECc-------cCcCccccCC
Q 040925 413 KNLSVLEFLSLS-------YNHFEGEVPT 434 (833)
Q Consensus 413 ~~l~~L~~L~l~-------~N~l~~~~~~ 434 (833)
..++.|+.++++ .|++.|.++.
T Consensus 259 ~~l~~L~~l~~~~~~~~~~~~~~~c~~~~ 287 (487)
T 3oja_A 259 SKNQRVQTVAKQTVKKLTGQNEEECTVPT 287 (487)
T ss_dssp TTCHHHHHHHHHHHHHHTSSSSCCCSSTT
T ss_pred HhCCCCcEEeccccccccCCCcccccCCc
Confidence 999999999987 6666665553
No 322
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.94 E-value=1.6e-26 Score=240.91 Aligned_cols=228 Identities=21% Similarity=0.251 Sum_probs=157.2
Q ss_pred EEEccCCcCcccCChhHhhhcccccEEEccCccccccCChhhhcCCCCCeEeccCCcccccCCccccCCCCCCEEEcccc
Q 040925 178 ALSLADNQFGGELPHSIANLSSTVINFGIGRNQISGTIPPGIRNLVNLIGFGAEENQLHGTIPDAIGELKNLQKLCLFRN 257 (833)
Q Consensus 178 ~L~Ls~N~l~~~~p~~~~~l~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 257 (833)
..+.++..++ .+|..+ +..++.|++++|++++..+..|.++++|++|++++|++.++.+..|..+++|++|+|++|
T Consensus 11 ~~~c~~~~l~-~ip~~l---~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n 86 (276)
T 2z62_A 11 TYQCMELNFY-KIPDNL---PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN 86 (276)
T ss_dssp EEECTTSCCS-SCCSSS---CTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTC
T ss_pred eEEecCCCcc-ccCCCC---CCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCC
Confidence 4566666665 455433 234555666666665555555555555666666655555555555555555555555555
Q ss_pred cCcccCCccccCCCCCCeEEeecccccCCCCCCCCCCCccceeecCCceecccCCcccccccccceeeecCCCccCCC-C
Q 040925 258 FLQGRIPSGLGNLTKLANLELSSNSLQGNIPSSLGNCQNLMSFTASQNKLTGALPHQLLSITTLSLYLDLSNNLLNGS-L 336 (833)
Q Consensus 258 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~ll~~L~ls~N~l~~~-~ 336 (833)
.+++..+..|.++++|++|++++|++.+..+..+..+++|++ |++++|.+++. +
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~-------------------------L~l~~n~l~~~~l 141 (276)
T 2z62_A 87 PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKE-------------------------LNVAHNLIQSFKL 141 (276)
T ss_dssp CCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCE-------------------------EECCSSCCCCCCC
T ss_pred ccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCE-------------------------EECcCCccceecC
Confidence 555555555555555555555555555444444555555554 55555555432 4
Q ss_pred CcccccCCCcCEEeccCCcCCCCCCccccCCCCCc----EEeecCCccccccCccccCCCCCCeEEccCcccCCCchhhh
Q 040925 337 PLQVGHLKNLVILDISSNQFSGVIPGTLSTCVCLE----YLDISSNSFHGVIPLSLSFLKSIKELNVSSNNLSGQIPEFL 412 (833)
Q Consensus 337 ~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~----~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~l 412 (833)
|..|.++++|++|++++|++++..+..|..+.+|+ .|++++|++++..+..+.. .+|+.|++++|++++..+..+
T Consensus 142 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~ 220 (276)
T 2z62_A 142 PEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE-IRLKELALDTNQLKSVPDGIF 220 (276)
T ss_dssp CGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCS-CCEEEEECCSSCCSCCCTTTT
T ss_pred chhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccCC-CcccEEECCCCceeecCHhHh
Confidence 77888899999999999999988888888877777 8999999999777766654 489999999999998888888
Q ss_pred cCCCCCceEECccCcCccccCCC
Q 040925 413 KNLSVLEFLSLSYNHFEGEVPTK 435 (833)
Q Consensus 413 ~~l~~L~~L~l~~N~l~~~~~~~ 435 (833)
..+++|+.|++++|+|+|.++..
T Consensus 221 ~~l~~L~~L~l~~N~~~c~c~~l 243 (276)
T 2z62_A 221 DRLTSLQKIWLHTNPWDCSCPRI 243 (276)
T ss_dssp TTCCSCCEEECCSSCBCCCTTTT
T ss_pred cccccccEEEccCCcccccCCch
Confidence 99999999999999999998854
No 323
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.94 E-value=2.7e-26 Score=239.10 Aligned_cols=227 Identities=20% Similarity=0.208 Sum_probs=166.8
Q ss_pred EEEccCCcccccCCccCCCCCCCCEEEcCCCcccccCCccccCCCCCcEEECCCcccccccCchhhcCCCCccEEEccCC
Q 040925 27 VIRIMGNSLGGKIPTTLGLLRNLVSLNVAENKFSGMFPRSICNISSLELIQLALNRFSGNLPFDIVVNLPNLKALAIGGN 106 (833)
Q Consensus 27 ~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N 106 (833)
.++..+..+ ..+|..+. ++|++|+|++|+++++.+..|.++++|++|+|++|+++ .++...|.++++|++|+|++|
T Consensus 11 ~~~c~~~~l-~~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L~~n 86 (276)
T 2z62_A 11 TYQCMELNF-YKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGN 86 (276)
T ss_dssp EEECTTSCC-SSCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCC-EECTTTTTTCTTCCEEECTTC
T ss_pred eEEecCCCc-cccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCC-ccCHHHccCCcCCCEEECCCC
Confidence 455566666 44555554 56788888888887776677888888888888888887 677777778888888888888
Q ss_pred cceeeCCccccCCCCCcEEEcccCccccccCcCccCCCcCceEecccccCCCCCCCCcccccccCCCCCCCEEEccCCcC
Q 040925 107 NFFGSIPYSLSNASNLELLDLSVNQFKGNVSIDFSSLKNLLWLNLEQNNLGTGTATDLDFVTFLTNCSSLKALSLADNQF 186 (833)
Q Consensus 107 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~N~l 186 (833)
.+++..+..|.++++|++|++++|+++++.+..|..+++|++|+|++|.++.+. .+..+.++++|++|+|++|++
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-----l~~~~~~l~~L~~L~Ls~N~l 161 (276)
T 2z62_A 87 PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFK-----LPEYFSNLTNLEHLDLSSNKI 161 (276)
T ss_dssp CCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCC-----CCGGGGGCTTCCEEECCSSCC
T ss_pred ccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceec-----CchhhccCCCCCEEECCCCCC
Confidence 888777778888888888888888888877777888888888888888886543 234577888999999999988
Q ss_pred cccCChhHhhhcccccEEEccCccccccCChhhhcCCCCC-eEeccCCcccccCCccccCCCCCCEEEcccccCcccCCc
Q 040925 187 GGELPHSIANLSSTVINFGIGRNQISGTIPPGIRNLVNLI-GFGAEENQLHGTIPDAIGELKNLQKLCLFRNFLQGRIPS 265 (833)
Q Consensus 187 ~~~~p~~~~~l~~~l~~L~l~~n~i~~~~~~~~~~l~~L~-~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 265 (833)
++..+..+..+. .++.|. .|++++|++.++.+..|.. .+|++|+|++|.+++..+.
T Consensus 162 ~~~~~~~~~~l~----------------------~L~~l~l~L~ls~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~ 218 (276)
T 2z62_A 162 QSIYCTDLRVLH----------------------QMPLLNLSLDLSLNPMNFIQPGAFKE-IRLKELALDTNQLKSVPDG 218 (276)
T ss_dssp CEECGGGGHHHH----------------------TCTTCCEEEECCSSCCCEECTTSSCS-CCEEEEECCSSCCSCCCTT
T ss_pred CcCCHHHhhhhh----------------------hccccceeeecCCCcccccCccccCC-CcccEEECCCCceeecCHh
Confidence 854444333322 122222 6777788877666665554 3788888888888876666
Q ss_pred cccCCCCCCeEEeecccccC
Q 040925 266 GLGNLTKLANLELSSNSLQG 285 (833)
Q Consensus 266 ~~~~l~~L~~L~L~~N~l~~ 285 (833)
.|..+++|+.|+|++|++..
T Consensus 219 ~~~~l~~L~~L~l~~N~~~c 238 (276)
T 2z62_A 219 IFDRLTSLQKIWLHTNPWDC 238 (276)
T ss_dssp TTTTCCSCCEEECCSSCBCC
T ss_pred HhcccccccEEEccCCcccc
Confidence 77888888888888888874
No 324
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.94 E-value=8.4e-29 Score=288.32 Aligned_cols=412 Identities=15% Similarity=0.130 Sum_probs=239.2
Q ss_pred EEEcCCCcCcccCCccccCCCCCCEEEccCCccc---ccCCcc------------CCCCCCCCEEEcCCCcccccCCccc
Q 040925 3 TLAVNDNYLTGQLPDFVGNLSDLEVIRIMGNSLG---GKIPTT------------LGLLRNLVSLNVAENKFSGMFPRSI 67 (833)
Q Consensus 3 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~---~~~~~~------------~~~l~~L~~L~L~~n~i~~~~~~~~ 67 (833)
.++++++.-. ..+..+..+++|+.|+++++.-. ...|.. +..+++|++|+|++|.+++..+..+
T Consensus 47 ~l~~~~~~~~-~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l 125 (594)
T 2p1m_B 47 KVFIGNCYAV-SPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELI 125 (594)
T ss_dssp EEEESSTTSS-CHHHHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHH
T ss_pred EEeecccccc-CHHHHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHH
Confidence 4455544333 22345677888999999987632 112221 2457788999999988887666667
Q ss_pred c-CCCCCcEEECCCc-ccccccCchhhcCCCCccEEEccCCcceeeCCcccc----CCCCCcEEEcccCccccccCcCc-
Q 040925 68 C-NISSLELIQLALN-RFSGNLPFDIVVNLPNLKALAIGGNNFFGSIPYSLS----NASNLELLDLSVNQFKGNVSIDF- 140 (833)
Q Consensus 68 ~-~l~~L~~L~L~~N-~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~----~l~~L~~L~L~~N~i~~~~~~~~- 140 (833)
. .+++|+.|+|++| .+++.....++.++++|++|+|++|.+++..+..+. .+++|++|+|++|. ..+....+
T Consensus 126 ~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~l~ 204 (594)
T 2p1m_B 126 AKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLA-SEVSFSALE 204 (594)
T ss_dssp HHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCC-SCCCHHHHH
T ss_pred HHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccC-CcCCHHHHH
Confidence 5 6888999999888 554222334556788899999988887755444333 56688888888886 22322233
Q ss_pred ---cCCCcCceEeccccc-CCCCCCCCcccccccCCCCCCCEEEccCCc-------CcccCChhHhhhcccccEE-EccC
Q 040925 141 ---SSLKNLLWLNLEQNN-LGTGTATDLDFVTFLTNCSSLKALSLADNQ-------FGGELPHSIANLSSTVINF-GIGR 208 (833)
Q Consensus 141 ---~~l~~L~~L~L~~N~-l~~~~~~~~~~~~~l~~l~~L~~L~Ls~N~-------l~~~~p~~~~~l~~~l~~L-~l~~ 208 (833)
..+++|++|+|++|. ++ .++..+.++++|++|+++.+. +. .++..+.++. .++.+ .+.+
T Consensus 205 ~l~~~~~~L~~L~L~~~~~~~-------~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~l~~~l~~~~-~L~~Ls~~~~ 275 (594)
T 2p1m_B 205 RLVTRCPNLKSLKLNRAVPLE-------KLATLLQRAPQLEELGTGGYTAEVRPDVYS-GLSVALSGCK-ELRCLSGFWD 275 (594)
T ss_dssp HHHHHCTTCCEEECCTTSCHH-------HHHHHHHHCTTCSEEECSBCCCCCCHHHHH-HHHHHHHTCT-TCCEEECCBT
T ss_pred HHHHhCCCCcEEecCCCCcHH-------HHHHHHhcCCcceEcccccccCccchhhHH-HHHHHHhcCC-CcccccCCcc
Confidence 345888888888872 21 134556677888888855543 33 2333444433 24444 2322
Q ss_pred ccccccCChhhhcCCCCCeEeccCCcccccCC-ccccCCCCCCEEEcccccCccc-CCccccCCCCCCeEEeec------
Q 040925 209 NQISGTIPPGIRNLVNLIGFGAEENQLHGTIP-DAIGELKNLQKLCLFRNFLQGR-IPSGLGNLTKLANLELSS------ 280 (833)
Q Consensus 209 n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~L~~------ 280 (833)
... ..++..+..+++|+.|++++|.+.+... ..+..+++|++|++++| +... ++.....+++|++|+|++
T Consensus 276 ~~~-~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~ 353 (594)
T 2p1m_B 276 AVP-AYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVM 353 (594)
T ss_dssp CCG-GGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCS
T ss_pred cch-hhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCccccc
Confidence 221 2344444566777777777777654322 23456777777777776 3321 111222467777777733
Q ss_pred ---ccccCCCCCCCC-CCCccceeecCCceecccCCccccc-ccccceeeecC--C----CccCCCCC-----cccccCC
Q 040925 281 ---NSLQGNIPSSLG-NCQNLMSFTASQNKLTGALPHQLLS-ITTLSLYLDLS--N----NLLNGSLP-----LQVGHLK 344 (833)
Q Consensus 281 ---N~l~~~~~~~~~-~l~~L~~L~l~~N~l~~~~p~~~~~-~~~ll~~L~ls--~----N~l~~~~~-----~~~~~l~ 344 (833)
+.+++.....+. ++++|+.|.++.|.+++..+..+.. ++.+ +.|+++ + |.++.... ..+..++
T Consensus 354 ~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L-~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~ 432 (594)
T 2p1m_B 354 EPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNM-TRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCK 432 (594)
T ss_dssp SCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTC-CEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCT
T ss_pred ccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCc-ceeEeecccCCCcccccCCchhhHHHHHHhhCC
Confidence 334322222222 3567777777667666444444432 3333 566666 3 44442111 1245566
Q ss_pred CcCEEeccCCcCCCCCCccccC-CCCCcEEeecCCccccccCccc-cCCCCCCeEEccCcccCCCchh-hhcCCCCCceE
Q 040925 345 NLVILDISSNQFSGVIPGTLST-CVCLEYLDISSNSFHGVIPLSL-SFLKSIKELNVSSNNLSGQIPE-FLKNLSVLEFL 421 (833)
Q Consensus 345 ~L~~L~ls~N~l~~~~~~~~~~-l~~L~~L~Ls~N~l~~~~~~~~-~~l~~L~~L~l~~N~l~~~~p~-~l~~l~~L~~L 421 (833)
+|+.|+|++ .+++..+..+.. +++|+.|+|++|.+++.....+ ..+++|+.|+|++|.+++.... ....+++|+.|
T Consensus 433 ~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L 511 (594)
T 2p1m_B 433 DLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSL 511 (594)
T ss_dssp TCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEE
T ss_pred CccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEE
Confidence 777777765 554443344443 6667777777777654433333 4567777777777777543332 33446677777
Q ss_pred ECccCcCc
Q 040925 422 SLSYNHFE 429 (833)
Q Consensus 422 ~l~~N~l~ 429 (833)
++++|+++
T Consensus 512 ~l~~~~~~ 519 (594)
T 2p1m_B 512 WMSSCSVS 519 (594)
T ss_dssp EEESSCCB
T ss_pred eeeCCCCC
Confidence 77777664
No 325
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.93 E-value=3e-25 Score=230.09 Aligned_cols=156 Identities=26% Similarity=0.332 Sum_probs=130.0
Q ss_pred CCCCCEEEccCCcccccCCccCCCCCCCCEEEcCCCcccccCCccccCCCCCcEEECCCcccccccCchhhcCCCCccEE
Q 040925 22 LSDLEVIRIMGNSLGGKIPTTLGLLRNLVSLNVAENKFSGMFPRSICNISSLELIQLALNRFSGNLPFDIVVNLPNLKAL 101 (833)
Q Consensus 22 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L 101 (833)
....+.+++++++++ .+|..+. ++|++|+|++|+++++.+.+|.++++|++|+|++|+++ .+|..+|.++++|++|
T Consensus 15 ~~~~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~i~~~~~~~l~~L~~L 90 (270)
T 2o6q_A 15 NNNKNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETL 90 (270)
T ss_dssp ETTTTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCS-CCCTTTTSSCTTCCEE
T ss_pred CCCCCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccC-eeChhhhcCCCCCCEE
Confidence 346788999999995 5676555 68999999999999877788999999999999999998 8888888999999999
Q ss_pred EccCCcceeeCCccccCCCCCcEEEcccCccccccCcCccCCCcCceEecccccCCCCCCCCcccccccCCCCCCCEEEc
Q 040925 102 AIGGNNFFGSIPYSLSNASNLELLDLSVNQFKGNVSIDFSSLKNLLWLNLEQNNLGTGTATDLDFVTFLTNCSSLKALSL 181 (833)
Q Consensus 102 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~l~~L~~L~L 181 (833)
+|++|.++...+..|.++++|++|+|++|+++.+++..|..+++|++|+|++|.++.++.. .|..+++|++|+|
T Consensus 91 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~------~~~~l~~L~~L~L 164 (270)
T 2o6q_A 91 WVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKG------VFDKLTSLKELRL 164 (270)
T ss_dssp ECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT------TTTTCTTCCEEEC
T ss_pred ECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHh------HccCCcccceeEe
Confidence 9999999877778889999999999999999999888899999999999999888765542 2456666666666
Q ss_pred cCCcCc
Q 040925 182 ADNQFG 187 (833)
Q Consensus 182 s~N~l~ 187 (833)
++|+++
T Consensus 165 ~~n~l~ 170 (270)
T 2o6q_A 165 YNNQLK 170 (270)
T ss_dssp CSSCCS
T ss_pred cCCcCc
Confidence 666655
No 326
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.93 E-value=2.2e-25 Score=231.17 Aligned_cols=206 Identities=23% Similarity=0.253 Sum_probs=139.8
Q ss_pred CCeEeccCCcccccCCccccCCCCCCEEEcccccCcccCCccccCCCCCCeEEeecccccCCCCCCCCCCCccceeecCC
Q 040925 225 LIGFGAEENQLHGTIPDAIGELKNLQKLCLFRNFLQGRIPSGLGNLTKLANLELSSNSLQGNIPSSLGNCQNLMSFTASQ 304 (833)
Q Consensus 225 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~ 304 (833)
.+.+++++|+++. +|..+. ++|++|+|++|.|+++.+..|.++++|++|+|++|+++...+..|.++++|++|++++
T Consensus 18 ~~~l~~~~~~l~~-ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~ 94 (270)
T 2o6q_A 18 KNSVDCSSKKLTA-IPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTD 94 (270)
T ss_dssp TTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCS
T ss_pred CCEEEccCCCCCc-cCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCC
Confidence 3445555555542 232222 3455555555555544444555555555555555555544444445555555555555
Q ss_pred ceecccCCcccccccccceeeecCCCccCCCCCcccccCCCcCEEeccCCcCCCCCCccccCCCCCcEEeecCCcccccc
Q 040925 305 NKLTGALPHQLLSITTLSLYLDLSNNLLNGSLPLQVGHLKNLVILDISSNQFSGVIPGTLSTCVCLEYLDISSNSFHGVI 384 (833)
Q Consensus 305 N~l~~~~p~~~~~~~~ll~~L~ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 384 (833)
|++++..+..+..+..+ ++|++++|.+++..+..|..+++|++|+|++|.+++..+..|..+++|++|+|++|+++++.
T Consensus 95 n~l~~~~~~~~~~l~~L-~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 173 (270)
T 2o6q_A 95 NKLQALPIGVFDQLVNL-AELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVP 173 (270)
T ss_dssp SCCCCCCTTTTTTCSSC-CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred CcCCcCCHhHcccccCC-CEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeC
Confidence 55552222223333333 55666666666666777888899999999999998887788899999999999999999888
Q ss_pred CccccCCCCCCeEEccCcccCCCchhhhcCCCCCceEECccCcCccccCC
Q 040925 385 PLSLSFLKSIKELNVSSNNLSGQIPEFLKNLSVLEFLSLSYNHFEGEVPT 434 (833)
Q Consensus 385 ~~~~~~l~~L~~L~l~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~ 434 (833)
+..|..+++|+.|+|++|++++..+..+..+++|+.|++++|+|.|.++.
T Consensus 174 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~ 223 (270)
T 2o6q_A 174 EGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCNG 223 (270)
T ss_dssp TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSSSS
T ss_pred hhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCCcc
Confidence 87888999999999999999987777888899999999999999988764
No 327
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.93 E-value=1.5e-25 Score=234.25 Aligned_cols=207 Identities=23% Similarity=0.246 Sum_probs=151.9
Q ss_pred hhcCCCCCeEeccCCcccccCCccccCCCCCCEEEcccccCcccCCccccCCCCCCeEEeecccccCCCCCCCCCCCccc
Q 040925 219 IRNLVNLIGFGAEENQLHGTIPDAIGELKNLQKLCLFRNFLQGRIPSGLGNLTKLANLELSSNSLQGNIPSSLGNCQNLM 298 (833)
Q Consensus 219 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 298 (833)
+.++++++++++++|+++.+ |..+. ++++.|+|++|.|++..+..|.++++|++|+|++|+|++..+. ..+++|+
T Consensus 6 ~~~l~~l~~l~~~~~~l~~i-p~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~ 80 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTAL-PPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLG 80 (290)
T ss_dssp EECSTTCCEEECTTSCCSSC-CSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCC
T ss_pred ccccCCccEEECCCCCCCcC-CCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCC
Confidence 55667777888888877743 33332 5777888888888777777777888888888888887754332 6677777
Q ss_pred eeecCCceecccCCcccccccccceeeecCCCccCCCCCcccccCCCcCEEeccCCcCCCCCCccccCCCCCcEEeecCC
Q 040925 299 SFTASQNKLTGALPHQLLSITTLSLYLDLSNNLLNGSLPLQVGHLKNLVILDISSNQFSGVIPGTLSTCVCLEYLDISSN 378 (833)
Q Consensus 299 ~L~l~~N~l~~~~p~~~~~~~~ll~~L~ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 378 (833)
.|++++|+++ .+|..+..+..+ ++|++++|++++..+..|.++++|++|+|++|++++.++..|..+++|+.|+|++|
T Consensus 81 ~L~Ls~N~l~-~l~~~~~~l~~L-~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 158 (290)
T 1p9a_G 81 TLDLSHNQLQ-SLPLLGQTLPAL-TVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN 158 (290)
T ss_dssp EEECCSSCCS-SCCCCTTTCTTC-CEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred EEECCCCcCC-cCchhhccCCCC-CEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCC
Confidence 7777777777 666666666665 66777777777666677777888888888888887777777778888888888888
Q ss_pred ccccccCccccCCCCCCeEEccCcccCCCchhhhcCCCCCceEECccCcCccccC
Q 040925 379 SFHGVIPLSLSFLKSIKELNVSSNNLSGQIPEFLKNLSVLEFLSLSYNHFEGEVP 433 (833)
Q Consensus 379 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~ 433 (833)
+|+++++..|..+++|+.|+|++|+++ .+|..+..+..|+.|+|++|+|.|.|.
T Consensus 159 ~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C~c~ 212 (290)
T 1p9a_G 159 NLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCNCE 212 (290)
T ss_dssp CCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCSGG
T ss_pred cCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccCcCc
Confidence 888766667777888888888888887 456666666777888888887777663
No 328
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.93 E-value=2e-25 Score=233.31 Aligned_cols=207 Identities=25% Similarity=0.232 Sum_probs=187.4
Q ss_pred cccCCCCCCEEEcccccCcccCCccccCCCCCCeEEeecccccCCCCCCCCCCCccceeecCCceecccCCccccccccc
Q 040925 242 AIGELKNLQKLCLFRNFLQGRIPSGLGNLTKLANLELSSNSLQGNIPSSLGNCQNLMSFTASQNKLTGALPHQLLSITTL 321 (833)
Q Consensus 242 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~l 321 (833)
.++.+++++++++++|.++ .+|..+. ++++.|+|++|++++..+..|.++++|+.|++++|.+++ ++.. ..+..+
T Consensus 5 ~~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~-~~l~~L 79 (290)
T 1p9a_G 5 EVSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQVD-GTLPVL 79 (290)
T ss_dssp EEECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-EECC-SCCTTC
T ss_pred cccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCc-ccCC-CCCCcC
Confidence 4778899999999999999 4666554 689999999999998889999999999999999999994 4443 555665
Q ss_pred ceeeecCCCccCCCCCcccccCCCcCEEeccCCcCCCCCCccccCCCCCcEEeecCCccccccCccccCCCCCCeEEccC
Q 040925 322 SLYLDLSNNLLNGSLPLQVGHLKNLVILDISSNQFSGVIPGTLSTCVCLEYLDISSNSFHGVIPLSLSFLKSIKELNVSS 401 (833)
Q Consensus 322 l~~L~ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~ 401 (833)
++|++++|.++ .+|..+..+++|++|+|++|+|++..+..|.++++|++|+|++|+|+++++..|..+++|+.|+|++
T Consensus 80 -~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 157 (290)
T 1p9a_G 80 -GTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLAN 157 (290)
T ss_dssp -CEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred -CEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCC
Confidence 89999999999 6788899999999999999999988889999999999999999999998888899999999999999
Q ss_pred cccCCCchhhhcCCCCCceEECccCcCccccCCCCccCCCccccccCCcCCCCC
Q 040925 402 NNLSGQIPEFLKNLSVLEFLSLSYNHFEGEVPTKGVFSNKTKISLQGNMKLCGG 455 (833)
Q Consensus 402 N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~l~l~~N~~~c~~ 455 (833)
|+|++..+..|..+++|+.|+|++|+++..++.......++.+.+.+|||.|..
T Consensus 158 N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~~C~c 211 (290)
T 1p9a_G 158 NNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLCNC 211 (290)
T ss_dssp SCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBCCSG
T ss_pred CcCCccCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCCccCcC
Confidence 999988888889999999999999999988877777778999999999999954
No 329
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.93 E-value=2.2e-28 Score=284.78 Aligned_cols=424 Identities=16% Similarity=0.141 Sum_probs=286.4
Q ss_pred CcEEEcCCCcCcc---cCCc------------cccCCCCCCEEEccCCcccccCCccCC-CCCCCCEEEcCCC-ccccc-
Q 040925 1 LQTLAVNDNYLTG---QLPD------------FVGNLSDLEVIRIMGNSLGGKIPTTLG-LLRNLVSLNVAEN-KFSGM- 62 (833)
Q Consensus 1 L~~L~l~~n~l~~---~~~~------------~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~L~~n-~i~~~- 62 (833)
|++|+++++.-.. ..|. .+..+++|++|+|++|.+++..+..+. .+++|++|+|++| .++..
T Consensus 68 L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~ 147 (594)
T 2p1m_B 68 VRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDG 147 (594)
T ss_dssp CCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHH
T ss_pred ceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHH
Confidence 6788888876321 2222 245688999999999999877777775 6899999999999 56533
Q ss_pred CCccccCCCCCcEEECCCcccccccCc---hhhcCCCCccEEEccCCc--cee-eCCccccCCCCCcEEEcccC-ccccc
Q 040925 63 FPRSICNISSLELIQLALNRFSGNLPF---DIVVNLPNLKALAIGGNN--FFG-SIPYSLSNASNLELLDLSVN-QFKGN 135 (833)
Q Consensus 63 ~~~~~~~l~~L~~L~L~~N~l~~~~~~---~~~~~l~~L~~L~L~~N~--l~~-~~~~~~~~l~~L~~L~L~~N-~i~~~ 135 (833)
++..+.++++|++|+|++|.+++..+. .+...+++|++|+|++|. +.. ..+..+..+++|++|+|++| .+.+
T Consensus 148 l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~- 226 (594)
T 2p1m_B 148 LAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEK- 226 (594)
T ss_dssp HHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHH-
T ss_pred HHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHH-
Confidence 344455899999999999998732221 223467799999999997 221 11222345699999999998 5554
Q ss_pred cCcCccCCCcCceEecccccCCCCCCCCcccccccCCCCCCCEE-EccCCcCcccCChhHhhhcccccEEEccCcccccc
Q 040925 136 VSIDFSSLKNLLWLNLEQNNLGTGTATDLDFVTFLTNCSSLKAL-SLADNQFGGELPHSIANLSSTVINFGIGRNQISGT 214 (833)
Q Consensus 136 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~l~~L~~L-~Ls~N~l~~~~p~~~~~l~~~l~~L~l~~n~i~~~ 214 (833)
.+..+..+++|++|+++.+........--..+..+.++++|+.| .+.+.... .+|..+..+ ..++.|++++|.++..
T Consensus 227 l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~-~l~~~~~~~-~~L~~L~L~~~~l~~~ 304 (594)
T 2p1m_B 227 LATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPA-YLPAVYSVC-SRLTTLNLSYATVQSY 304 (594)
T ss_dssp HHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGG-GGGGGHHHH-TTCCEEECTTCCCCHH
T ss_pred HHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchh-hHHHHHHhh-CCCCEEEccCCCCCHH
Confidence 45567788999999976553210000000122356788888888 45444332 444444433 4588899998887644
Q ss_pred CCh-hhhcCCCCCeEeccCCccccc-CCccccCCCCCCEEEccc---------ccCcccCCcccc-CCCCCCeEEeeccc
Q 040925 215 IPP-GIRNLVNLIGFGAEENQLHGT-IPDAIGELKNLQKLCLFR---------NFLQGRIPSGLG-NLTKLANLELSSNS 282 (833)
Q Consensus 215 ~~~-~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~L~~---------N~l~~~~~~~~~-~l~~L~~L~L~~N~ 282 (833)
... .+..+++|+.|++++| +... .+.....+++|++|+|++ +.+++.....+. ++++|+.|+++.|+
T Consensus 305 ~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~ 383 (594)
T 2p1m_B 305 DLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQ 383 (594)
T ss_dssp HHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESC
T ss_pred HHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCC
Confidence 333 3568899999999988 4432 222334588999998843 455533222333 47899999998888
Q ss_pred ccCCCCCCCC-CCCccceeecC--C----ceecc-----cCCcccccccccceeeecCCCccCCCCCccccc-CCCcCEE
Q 040925 283 LQGNIPSSLG-NCQNLMSFTAS--Q----NKLTG-----ALPHQLLSITTLSLYLDLSNNLLNGSLPLQVGH-LKNLVIL 349 (833)
Q Consensus 283 l~~~~~~~~~-~l~~L~~L~l~--~----N~l~~-----~~p~~~~~~~~ll~~L~ls~N~l~~~~~~~~~~-l~~L~~L 349 (833)
+++.....+. .+++|+.|+++ + |.+++ .++..+..+..+ +.|++++ .+++..+..+.. +++|+.|
T Consensus 384 l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L-~~L~L~~-~l~~~~~~~l~~~~~~L~~L 461 (594)
T 2p1m_B 384 MTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDL-RRLSLSG-LLTDKVFEYIGTYAKKMEML 461 (594)
T ss_dssp CCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTC-CEEECCS-SCCHHHHHHHHHHCTTCCEE
T ss_pred cCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCc-cEEeecC-cccHHHHHHHHHhchhccEe
Confidence 8765555554 57899999998 4 55551 111223344555 7899977 666544455554 8999999
Q ss_pred eccCCcCCCCCCccc-cCCCCCcEEeecCCccccccCc-cccCCCCCCeEEccCcccCCCchhhh-cCCCCCceEECccC
Q 040925 350 DISSNQFSGVIPGTL-STCVCLEYLDISSNSFHGVIPL-SLSFLKSIKELNVSSNNLSGQIPEFL-KNLSVLEFLSLSYN 426 (833)
Q Consensus 350 ~ls~N~l~~~~~~~~-~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~l~~N~l~~~~p~~l-~~l~~L~~L~l~~N 426 (833)
+|++|.+++..+..+ .++++|++|+|++|.+++.... ....+++|+.|++++|+++......+ ..++.|+...+..+
T Consensus 462 ~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~~ 541 (594)
T 2p1m_B 462 SVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDER 541 (594)
T ss_dssp EEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEEEEECSS
T ss_pred eccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEEEEecCC
Confidence 999999976555555 6799999999999999754433 34568999999999999965444445 56788877777766
Q ss_pred cCcc
Q 040925 427 HFEG 430 (833)
Q Consensus 427 ~l~~ 430 (833)
.-..
T Consensus 542 ~~~~ 545 (594)
T 2p1m_B 542 GAPD 545 (594)
T ss_dssp SCGG
T ss_pred Cccc
Confidence 5443
No 330
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.92 E-value=1.7e-24 Score=224.69 Aligned_cols=223 Identities=21% Similarity=0.245 Sum_probs=184.6
Q ss_pred EcCCCcCcccCCccccCCCCCCEEEccCCcccccCCccCCCCCCCCEEEcCCCcccccCCccccCCCCCcEEECCCcccc
Q 040925 5 AVNDNYLTGQLPDFVGNLSDLEVIRIMGNSLGGKIPTTLGLLRNLVSLNVAENKFSGMFPRSICNISSLELIQLALNRFS 84 (833)
Q Consensus 5 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~ 84 (833)
++..+.++.. ..+..+++|+.|++++|.++. + ..++.+++|++|+|++|++++. ..+.++++|++|+|++|.++
T Consensus 25 ~l~~~~~~~~--~~~~~l~~L~~L~l~~~~i~~-~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~ 98 (272)
T 3rfs_A 25 NLKKKSVTDA--VTQNELNSIDQIIANNSDIKS-V-QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQ 98 (272)
T ss_dssp HHTCSCTTSE--ECHHHHTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCC
T ss_pred HhcCcccccc--cccccccceeeeeeCCCCccc-c-cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccC
Confidence 3455555532 346778899999999999953 3 3588999999999999999853 48999999999999999998
Q ss_pred cccCchhhcCCCCccEEEccCCcceeeCCccccCCCCCcEEEcccCccccccCcCccCCCcCceEecccccCCCCCCCCc
Q 040925 85 GNLPFDIVVNLPNLKALAIGGNNFFGSIPYSLSNASNLELLDLSVNQFKGNVSIDFSSLKNLLWLNLEQNNLGTGTATDL 164 (833)
Q Consensus 85 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 164 (833)
.++...|.++++|++|+|++|++++..+..|.++++|++|+|++|+++++++..|..+++|++|+|++|+++.++..
T Consensus 99 -~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-- 175 (272)
T 3rfs_A 99 -SLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEG-- 175 (272)
T ss_dssp -CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT--
T ss_pred -ccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHH--
Confidence 78888889999999999999999988888899999999999999999999988899999999999999999876653
Q ss_pred ccccccCCCCCCCEEEccCCcCcccCChhHhhhcccccEEEccCccccccCChhhhcCCCCCeEeccCCcccccCCcccc
Q 040925 165 DFVTFLTNCSSLKALSLADNQFGGELPHSIANLSSTVINFGIGRNQISGTIPPGIRNLVNLIGFGAEENQLHGTIPDAIG 244 (833)
Q Consensus 165 ~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 244 (833)
.+.++++|++|+|++|++++ ..+..|..+++|+.|++++|.+.+
T Consensus 176 ----~~~~l~~L~~L~L~~N~l~~-------------------------~~~~~~~~l~~L~~L~l~~N~~~~------- 219 (272)
T 3rfs_A 176 ----VFDKLTQLKDLRLYQNQLKS-------------------------VPDGVFDRLTSLQYIWLHDNPWDC------- 219 (272)
T ss_dssp ----TTTTCTTCCEEECCSSCCSC-------------------------CCTTTTTTCTTCCEEECCSSCBCC-------
T ss_pred ----HhcCCccCCEEECCCCcCCc-------------------------cCHHHHhCCcCCCEEEccCCCccc-------
Confidence 36788999999999998873 334456777888888888887764
Q ss_pred CCCCCCEEEcccccCcccCCccccCCCC
Q 040925 245 ELKNLQKLCLFRNFLQGRIPSGLGNLTK 272 (833)
Q Consensus 245 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 272 (833)
.+++|+.|+++.|.+++.+|..++.+..
T Consensus 220 ~~~~l~~l~~~~n~~~g~ip~~~~~~~~ 247 (272)
T 3rfs_A 220 TCPGIRYLSEWINKHSGVVRNSAGSVAP 247 (272)
T ss_dssp CTTTTHHHHHHHHHTGGGBBCTTSCBCG
T ss_pred cCcHHHHHHHHHHhCCCcccCcccccCC
Confidence 3557888888888888888887776543
No 331
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.92 E-value=6.1e-26 Score=246.09 Aligned_cols=262 Identities=17% Similarity=0.233 Sum_probs=165.0
Q ss_pred EEccCCcccccCCccCCCCCCCCEEEcCCCcccccCC----ccccCCC-CCcEEECCCcccccccCchhhcCC-----CC
Q 040925 28 IRIMGNSLGGKIPTTLGLLRNLVSLNVAENKFSGMFP----RSICNIS-SLELIQLALNRFSGNLPFDIVVNL-----PN 97 (833)
Q Consensus 28 L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~----~~~~~l~-~L~~L~L~~N~l~~~~~~~~~~~l-----~~ 97 (833)
++++.|.+++.+|..+...++|++|+|++|.|++..+ ..|.+++ +|++|+|++|+++ ......|..+ ++
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~-~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLG-FKNSDELVQILAAIPAN 81 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGG-GSCHHHHHHHHHTSCTT
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCC-HHHHHHHHHHHhccCCC
Confidence 5677777777777766666667777777777776655 6677777 7777777777776 4333344443 67
Q ss_pred ccEEEccCCcceeeCCcc----ccCC-CCCcEEEcccCccccccCcCccC-----CCcCceEecccccCCCCCCCCcccc
Q 040925 98 LKALAIGGNNFFGSIPYS----LSNA-SNLELLDLSVNQFKGNVSIDFSS-----LKNLLWLNLEQNNLGTGTATDLDFV 167 (833)
Q Consensus 98 L~~L~L~~N~l~~~~~~~----~~~l-~~L~~L~L~~N~i~~~~~~~~~~-----l~~L~~L~L~~N~l~~~~~~~~~~~ 167 (833)
|++|+|++|.+++..+.. +..+ ++|++|+|++|+|+......|.. .++|++|+|++|.++..... .+.
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~--~l~ 159 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSD--ELI 159 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHH--HHH
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHH--HHH
Confidence 777777777776544443 3333 66777777777776555544322 14566666666665532221 122
Q ss_pred cccCCCC-CCCEEEccCCcCcccCChhHhhhcccccEEEccCccccccCChhhhcC-CCCCeEeccCCccccc----CCc
Q 040925 168 TFLTNCS-SLKALSLADNQFGGELPHSIANLSSTVINFGIGRNQISGTIPPGIRNL-VNLIGFGAEENQLHGT----IPD 241 (833)
Q Consensus 168 ~~l~~l~-~L~~L~Ls~N~l~~~~p~~~~~l~~~l~~L~l~~n~i~~~~~~~~~~l-~~L~~L~L~~N~l~~~----~~~ 241 (833)
..+..++ +|++|+|++|++++..+..+.. .+..+ ++|++|+|++|++++. ++.
T Consensus 160 ~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~---------------------~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~ 218 (362)
T 3goz_A 160 QILAAIPANVNSLNLRGNNLASKNCAELAK---------------------FLASIPASVTSLDLSANLLGLKSYAELAY 218 (362)
T ss_dssp HHHHTSCTTCCEEECTTSCGGGSCHHHHHH---------------------HHHTSCTTCCEEECTTSCGGGSCHHHHHH
T ss_pred HHHhcCCccccEeeecCCCCchhhHHHHHH---------------------HHHhCCCCCCEEECCCCCCChhHHHHHHH
Confidence 2233333 5555555555555433333322 23334 4788888888888753 344
Q ss_pred cccC-CCCCCEEEcccccCcccCC----ccccCCCCCCeEEeecccccCC-------CCCCCCCCCccceeecCCceecc
Q 040925 242 AIGE-LKNLQKLCLFRNFLQGRIP----SGLGNLTKLANLELSSNSLQGN-------IPSSLGNCQNLMSFTASQNKLTG 309 (833)
Q Consensus 242 ~~~~-l~~L~~L~L~~N~l~~~~~----~~~~~l~~L~~L~L~~N~l~~~-------~~~~~~~l~~L~~L~l~~N~l~~ 309 (833)
.+.. .++|++|+|++|.|++..+ ..+..+++|++|+|++|.+... ++..+..+++|+.|++++|++.+
T Consensus 219 ~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~ 298 (362)
T 3goz_A 219 IFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHP 298 (362)
T ss_dssp HHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCG
T ss_pred HHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCC
Confidence 5554 3589999999998886544 3456778899999999985533 33467788888888898888875
Q ss_pred cCCc
Q 040925 310 ALPH 313 (833)
Q Consensus 310 ~~p~ 313 (833)
..+.
T Consensus 299 ~~~~ 302 (362)
T 3goz_A 299 SHSI 302 (362)
T ss_dssp GGCH
T ss_pred cchH
Confidence 5443
No 332
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.92 E-value=4.6e-25 Score=228.93 Aligned_cols=181 Identities=27% Similarity=0.258 Sum_probs=97.8
Q ss_pred hcCCCCCeEeccCCcccccCCccccCCCCCCEEEcccccCcccCCccccCCCCCCeEEeecccccCCCCCCCCCCCccce
Q 040925 220 RNLVNLIGFGAEENQLHGTIPDAIGELKNLQKLCLFRNFLQGRIPSGLGNLTKLANLELSSNSLQGNIPSSLGNCQNLMS 299 (833)
Q Consensus 220 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 299 (833)
..+++|++|++++|++.+. ..+..+++|++|+|++|.+++..+..|.++++|++|+|++|++++..+..|..+++|+.
T Consensus 60 ~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 137 (272)
T 3rfs_A 60 QYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTY 137 (272)
T ss_dssp GGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred ccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCE
Confidence 3344444444444444431 24445555555555555555444444555555555555555555444444455555444
Q ss_pred eecCCceecccCCcccccccccceeeecCCCccCCCCCcccccCCCcCEEeccCCcCCCCCCccccCCCCCcEEeecCCc
Q 040925 300 FTASQNKLTGALPHQLLSITTLSLYLDLSNNLLNGSLPLQVGHLKNLVILDISSNQFSGVIPGTLSTCVCLEYLDISSNS 379 (833)
Q Consensus 300 L~l~~N~l~~~~p~~~~~~~~ll~~L~ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 379 (833)
|++++|+++ +..+..|..+++|+.|++++|++++..+..|..+++|++|++++|+
T Consensus 138 L~L~~n~l~-------------------------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~ 192 (272)
T 3rfs_A 138 LNLAHNQLQ-------------------------SLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQ 192 (272)
T ss_dssp EECCSSCCC-------------------------CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EECCCCccC-------------------------ccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCc
Confidence 444444333 2333344555666666666666665555556666666666666666
Q ss_pred cccccCccccCCCCCCeEEccCcccCCCchhhhcCCCCCceEECccCcCccccCC
Q 040925 380 FHGVIPLSLSFLKSIKELNVSSNNLSGQIPEFLKNLSVLEFLSLSYNHFEGEVPT 434 (833)
Q Consensus 380 l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~ 434 (833)
+++..+..+..+++|+.|++++|.+.+. ++.|+.|++..|.++|.+|.
T Consensus 193 l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~~g~ip~ 240 (272)
T 3rfs_A 193 LKSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRN 240 (272)
T ss_dssp CSCCCTTTTTTCTTCCEEECCSSCBCCC-------TTTTHHHHHHHHHTGGGBBC
T ss_pred CCccCHHHHhCCcCCCEEEccCCCcccc-------CcHHHHHHHHHHhCCCcccC
Confidence 6655555566666666666666666543 33466666666666666654
No 333
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.92 E-value=6.6e-26 Score=245.81 Aligned_cols=260 Identities=18% Similarity=0.213 Sum_probs=192.4
Q ss_pred EEEcCCCcCcccCCccccCCCCCCEEEccCCcccccCC----ccCCCCC-CCCEEEcCCCcccccCCccccCC-----CC
Q 040925 3 TLAVNDNYLTGQLPDFVGNLSDLEVIRIMGNSLGGKIP----TTLGLLR-NLVSLNVAENKFSGMFPRSICNI-----SS 72 (833)
Q Consensus 3 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~----~~~~~l~-~L~~L~L~~n~i~~~~~~~~~~l-----~~ 72 (833)
.+.+++|.+++.+|..+...++|++|+|++|.+++..+ ..|..++ +|++|+|++|+|++..+..|..+ ++
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 36899999999999988888889999999999987777 7888998 99999999999998888888876 99
Q ss_pred CcEEECCCcccccccCchh----hcCC-CCccEEEccCCcceeeCCcccc----C-CCCCcEEEcccCccccccCcC---
Q 040925 73 LELIQLALNRFSGNLPFDI----VVNL-PNLKALAIGGNNFFGSIPYSLS----N-ASNLELLDLSVNQFKGNVSID--- 139 (833)
Q Consensus 73 L~~L~L~~N~l~~~~~~~~----~~~l-~~L~~L~L~~N~l~~~~~~~~~----~-l~~L~~L~L~~N~i~~~~~~~--- 139 (833)
|++|+|++|+++ ..+... +..+ ++|++|+|++|.+++..+..+. . .++|++|+|++|+|+......
T Consensus 82 L~~L~Ls~n~l~-~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~ 160 (362)
T 3goz_A 82 VTSLNLSGNFLS-YKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQ 160 (362)
T ss_dssp CCEEECCSSCGG-GSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHH
T ss_pred ccEEECcCCcCC-hHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHH
Confidence 999999999998 444442 4445 8999999999999876665443 3 369999999999999654433
Q ss_pred -ccCCC-cCceEecccccCCCCCCCCcccccccCCC-CCCCEEEccCCcCcccCChhHhhhcccccEEEccCccccccCC
Q 040925 140 -FSSLK-NLLWLNLEQNNLGTGTATDLDFVTFLTNC-SSLKALSLADNQFGGELPHSIANLSSTVINFGIGRNQISGTIP 216 (833)
Q Consensus 140 -~~~l~-~L~~L~L~~N~l~~~~~~~~~~~~~l~~l-~~L~~L~Ls~N~l~~~~p~~~~~l~~~l~~L~l~~n~i~~~~~ 216 (833)
+..++ +|++|+|++|+++..... .+...+..+ ++|++|+|++|+++......+ +
T Consensus 161 ~l~~~~~~L~~L~Ls~n~l~~~~~~--~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l---------------------~ 217 (362)
T 3goz_A 161 ILAAIPANVNSLNLRGNNLASKNCA--ELAKFLASIPASVTSLDLSANLLGLKSYAEL---------------------A 217 (362)
T ss_dssp HHHTSCTTCCEEECTTSCGGGSCHH--HHHHHHHTSCTTCCEEECTTSCGGGSCHHHH---------------------H
T ss_pred HHhcCCccccEeeecCCCCchhhHH--HHHHHHHhCCCCCCEEECCCCCCChhHHHHH---------------------H
Confidence 34555 999999999999765442 223445666 599999999999985322211 2
Q ss_pred hhhhc-CCCCCeEeccCCcccccCC----ccccCCCCCCEEEcccccCcccC-------CccccCCCCCCeEEeeccccc
Q 040925 217 PGIRN-LVNLIGFGAEENQLHGTIP----DAIGELKNLQKLCLFRNFLQGRI-------PSGLGNLTKLANLELSSNSLQ 284 (833)
Q Consensus 217 ~~~~~-l~~L~~L~L~~N~l~~~~~----~~~~~l~~L~~L~L~~N~l~~~~-------~~~~~~l~~L~~L~L~~N~l~ 284 (833)
..+.. .++|++|+|++|++++..+ ..+..+++|++|+|++|.+.++. +..+..+++|+.|||++|++.
T Consensus 218 ~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~ 297 (362)
T 3goz_A 218 YIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIH 297 (362)
T ss_dssp HHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCC
T ss_pred HHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCC
Confidence 23333 2356666666666655433 33455677777777777744322 235566777777777777776
Q ss_pred CC
Q 040925 285 GN 286 (833)
Q Consensus 285 ~~ 286 (833)
..
T Consensus 298 ~~ 299 (362)
T 3goz_A 298 PS 299 (362)
T ss_dssp GG
T ss_pred Cc
Confidence 44
No 334
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.92 E-value=1.1e-24 Score=234.81 Aligned_cols=240 Identities=21% Similarity=0.220 Sum_probs=161.2
Q ss_pred CEEEccCCcccccCCccCCCCCCCCEEEcCCCcccccCCccccCCCCCcEEECCCcccccccCchhhcCCCCccE-EEcc
Q 040925 26 EVIRIMGNSLGGKIPTTLGLLRNLVSLNVAENKFSGMFPRSICNISSLELIQLALNRFSGNLPFDIVVNLPNLKA-LAIG 104 (833)
Q Consensus 26 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~-L~L~ 104 (833)
++++.+++++ +.+|..+ .+++++|+|++|+|+.+.+++|.++++|++|+|++|++.+.+|.++|.++++|++ +.++
T Consensus 12 ~~v~C~~~~L-t~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 12 RVFLCQESKV-TEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp TEEEEESTTC-CSCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred CEEEecCCCC-CccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 5678888888 4566655 3678888888888887767788888888888888888865788888888888765 6667
Q ss_pred CCcceeeCCccccCCCCCcEEEcccCccccccCcCccCCCcCceEeccc-ccCCCCCCCCcccccccCCC-CCCCEEEcc
Q 040925 105 GNNFFGSIPYSLSNASNLELLDLSVNQFKGNVSIDFSSLKNLLWLNLEQ-NNLGTGTATDLDFVTFLTNC-SSLKALSLA 182 (833)
Q Consensus 105 ~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~~~~l~~l-~~L~~L~Ls 182 (833)
+|+|+.+.|..|.++++|++|++++|+|+.+++..+....++..|++.+ |++..++... |..+ ..++.|+|+
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~------f~~~~~~l~~L~L~ 162 (350)
T 4ay9_X 89 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNS------FVGLSFESVILWLN 162 (350)
T ss_dssp ETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTS------STTSBSSCEEEECC
T ss_pred CCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccc------hhhcchhhhhhccc
Confidence 7888888888888888888888888888888877777777788887754 5666554432 3333 246666666
Q ss_pred CCcCcccCChhHhhhcccccEEEccCccccccCChhhhcCCCCCeEecc-CCcccccCCccccCCCCCCEEEcccccCcc
Q 040925 183 DNQFGGELPHSIANLSSTVINFGIGRNQISGTIPPGIRNLVNLIGFGAE-ENQLHGTIPDAIGELKNLQKLCLFRNFLQG 261 (833)
Q Consensus 183 ~N~l~~~~p~~~~~l~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~-~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 261 (833)
+|+|+ .+|. ..| ...+|+.|++. +|.++.+.+++|.++++|++|+|++|+|+.
T Consensus 163 ~N~i~-~i~~------------------------~~f-~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~ 216 (350)
T 4ay9_X 163 KNGIQ-EIHN------------------------SAF-NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHS 216 (350)
T ss_dssp SSCCC-EECT------------------------TSS-TTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCC
T ss_pred ccccc-CCCh------------------------hhc-cccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCc
Confidence 66665 2222 222 23456666665 355555555666777777777777777765
Q ss_pred cCCccccCCCCCCeEEeecc-cccCCCCCCCCCCCccceeecCCc
Q 040925 262 RIPSGLGNLTKLANLELSSN-SLQGNIPSSLGNCQNLMSFTASQN 305 (833)
Q Consensus 262 ~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N 305 (833)
+.+..|. +|+.|.+.++ .++ .+| .+.++++|+.++++++
T Consensus 217 lp~~~~~---~L~~L~~l~~~~l~-~lP-~l~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 217 LPSYGLE---NLKKLRARSTYNLK-KLP-TLEKLVALMEASLTYP 256 (350)
T ss_dssp CCSSSCT---TCCEEECTTCTTCC-CCC-CTTTCCSCCEEECSCH
T ss_pred cChhhhc---cchHhhhccCCCcC-cCC-CchhCcChhhCcCCCC
Confidence 4444443 3444443333 233 444 3666667776666543
No 335
>3en9_A Glycoprotease, O-sialoglycoprotein endopeptidase/protein kinase; endopeptidase activity, protein kinase activity; HET: TBR; 2.67A {Methanocaldococcus jannaschii} PDB: 3enh_A* 2vwb_A*
Probab=99.92 E-value=1.3e-25 Score=254.63 Aligned_cols=176 Identities=18% Similarity=0.154 Sum_probs=129.3
Q ss_pred CccCceeccCcceEEEEEEECCCceEEEEEEeeccCCc--------chhHHHHHHHHHhhcCCCccceEeeEeecCCCCC
Q 040925 533 FSSSNMIGQGSFGYVYKGTLGEDEMIVAVKVINLKYKG--------ASRSFVAECEALRNIRHRNLIKIITICSSTDFKG 604 (833)
Q Consensus 533 y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~--------~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~ 604 (833)
+...+.||+|+||.||+|.. .++.+|+|+....... ..+.+.+|++++++++||||+++..++...+
T Consensus 338 ~~~~~~LG~G~fg~Vy~~~~--~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~E~~il~~l~h~nIv~~~~~~~~~~--- 412 (540)
T 3en9_A 338 KIPEHLIGKGAEADIKRDSY--LDFDVIIKERVKKGYRDERLDENIRKSRTAREARYLALVKDFGIPAPYIFDVDLD--- 412 (540)
T ss_dssp ----------CCEEEEEEEC--SSCEEEEEEECCCTTSCHHHHHHHHHHHHHHHHHHHHHGGGGTCCCCCEEEEETT---
T ss_pred CCCCCEEeeCCCEEEEEEEE--CCCeEEEEEEecccccchhhhhHHHHHHHHHHHHHHHhcCCCCcCceEEEEEeCC---
Confidence 34567999999999999955 5778899986533211 1245799999999999999995555544333
Q ss_pred CceEeEEEEecCCCChhhhhccCCCccccccCCHHHHHHHHHHHHHHHHHHhhcCCCCceeeCCCCCCeeecCCCcEEEc
Q 040925 605 TDFKAFVFEYMENGSLKDWLHQSDDQVEVCKLSLIQRVNIAIDVASAMEYLHHHCQPPMVHGDLKPSNVLLDHDMVAHVC 684 (833)
Q Consensus 605 ~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~gL~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kL~ 684 (833)
..|+||||+++|+|.+++.. +..++.|++.||+|||++ +|+||||||+||+++. .+||+
T Consensus 413 --~~~lVmE~~~ggsL~~~l~~--------------~~~i~~qi~~aL~~LH~~---gIiHrDiKp~NILl~~--~~kL~ 471 (540)
T 3en9_A 413 --NKRIMMSYINGKLAKDVIED--------------NLDIAYKIGEIVGKLHKN---DVIHNDLTTSNFIFDK--DLYII 471 (540)
T ss_dssp --TTEEEEECCCSEEHHHHSTT--------------CTHHHHHHHHHHHHHHHT---TEECTTCCTTSEEESS--SEEEC
T ss_pred --ccEEEEECCCCCCHHHHHHH--------------HHHHHHHHHHHHHHHHHC---cCccCCCCHHHEEECC--eEEEE
Confidence 56999999999999999874 457899999999999999 9999999999999998 99999
Q ss_pred ccccccccCcccccccccCCCccccccccccccCccccCC--CCCCccccccc
Q 040925 685 DFGLAKFLSDHQLDTAVKTPSSSIGLKGTVGYVAPEYGMG--SEASMTGDIFT 735 (833)
Q Consensus 685 DfG~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~--~~~~~~~Di~s 735 (833)
|||+|+........... .........||+.|||||++.+ ..|+..+|+|+
T Consensus 472 DFGla~~~~~~~~~~~~-~~~~~~~~~GT~~y~APEv~~~~~~~Y~~~~d~ws 523 (540)
T 3en9_A 472 DFGLGKISNLDEDKAVD-LIVFKKAVLSTHHEKFDEIWERFLEGYKSVYDRWE 523 (540)
T ss_dssp CCTTCEECCCHHHHHHH-HHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCTTHH
T ss_pred ECccCEECCCccccccc-hhhhhhhhcCCCCcCCHHHHHHHHHHHHHHHhHHH
Confidence 99999977553211100 0001124679999999999876 56888889887
No 336
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.91 E-value=2.3e-24 Score=219.14 Aligned_cols=196 Identities=16% Similarity=0.183 Sum_probs=112.7
Q ss_pred CCCEEEcCCCcccccCCccccCCCCCcEEECCCcc-cccccCchhhcCCCCccEEEccC-CcceeeCCccccCCCCCcEE
Q 040925 48 NLVSLNVAENKFSGMFPRSICNISSLELIQLALNR-FSGNLPFDIVVNLPNLKALAIGG-NNFFGSIPYSLSNASNLELL 125 (833)
Q Consensus 48 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L 125 (833)
+|++|+|++|+|+++.+..|.++++|++|++++|+ ++ .++...|.++++|++|+|++ |.++.+.+..|.++++|++|
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~-~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQ-QLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCC-EECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcc-eeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 56666666666665555566666666666666665 54 55555566666666666665 66665555566666666666
Q ss_pred EcccCccccccCcCccCCCcCc---eEecccc-cCCCCCCCCcccccccCCCCCCC-EEEccCCcCcccCChhHhhhccc
Q 040925 126 DLSVNQFKGNVSIDFSSLKNLL---WLNLEQN-NLGTGTATDLDFVTFLTNCSSLK-ALSLADNQFGGELPHSIANLSST 200 (833)
Q Consensus 126 ~L~~N~i~~~~~~~~~~l~~L~---~L~L~~N-~l~~~~~~~~~~~~~l~~l~~L~-~L~Ls~N~l~~~~p~~~~~l~~~ 200 (833)
+|++|++++++. |..+++|+ +|++++| .++.++.. .|.++++|+ +|++++|+++ .+|..
T Consensus 111 ~l~~n~l~~lp~--~~~l~~L~~L~~L~l~~N~~l~~i~~~------~~~~l~~L~~~L~l~~n~l~-~i~~~------- 174 (239)
T 2xwt_C 111 GIFNTGLKMFPD--LTKVYSTDIFFILEITDNPYMTSIPVN------AFQGLCNETLTLKLYNNGFT-SVQGY------- 174 (239)
T ss_dssp EEEEECCCSCCC--CTTCCBCCSEEEEEEESCTTCCEECTT------TTTTTBSSEEEEECCSCCCC-EECTT-------
T ss_pred eCCCCCCccccc--cccccccccccEEECCCCcchhhcCcc------cccchhcceeEEEcCCCCCc-ccCHh-------
Confidence 666666665433 55555555 6666666 55544432 244556666 6666666655 33322
Q ss_pred ccEEEccCccccccCChhhhcCCCCCeEeccCCc-ccccCCccccCC-CCCCEEEcccccCcccCCccccCCCCCCeEEe
Q 040925 201 VINFGIGRNQISGTIPPGIRNLVNLIGFGAEENQ-LHGTIPDAIGEL-KNLQKLCLFRNFLQGRIPSGLGNLTKLANLEL 278 (833)
Q Consensus 201 l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l-~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 278 (833)
.|.. ++|+.|++++|+ ++++.+..|.++ ++|++|+|++|.|+++ |.. .+++|+.|++
T Consensus 175 -----------------~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l-~~~--~~~~L~~L~l 233 (239)
T 2xwt_C 175 -----------------AFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTAL-PSK--GLEHLKELIA 233 (239)
T ss_dssp -----------------TTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCC-CCT--TCTTCSEEEC
T ss_pred -----------------hcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccC-Chh--HhccCceeec
Confidence 2222 455555666663 555555566666 6666666666666643 322 4456666666
Q ss_pred ecc
Q 040925 279 SSN 281 (833)
Q Consensus 279 ~~N 281 (833)
+++
T Consensus 234 ~~~ 236 (239)
T 2xwt_C 234 RNT 236 (239)
T ss_dssp TTC
T ss_pred cCc
Confidence 554
No 337
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.91 E-value=2.2e-23 Score=213.53 Aligned_cols=178 Identities=23% Similarity=0.310 Sum_probs=164.0
Q ss_pred cEEEcCCCcCcccCCccccCCCCCCEEEccCCcccccCCccCCCCCCCCEEEcCCCcccccCCccccCCCCCcEEECCCc
Q 040925 2 QTLAVNDNYLTGQLPDFVGNLSDLEVIRIMGNSLGGKIPTTLGLLRNLVSLNVAENKFSGMFPRSICNISSLELIQLALN 81 (833)
Q Consensus 2 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N 81 (833)
++++++++.++ .+|..+. ++++.|+|++|++++..+..|..+++|++|+|++|+|+++.+..|.++++|++|+|++|
T Consensus 17 ~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 93 (251)
T 3m19_A 17 KEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANN 93 (251)
T ss_dssp TEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred eEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCC
Confidence 67999999999 6787766 59999999999999999999999999999999999999988999999999999999999
Q ss_pred ccccccCchhhcCCCCccEEEccCCcceeeCCccccCCCCCcEEEcccCccccccCcCccCCCcCceEecccccCCCCCC
Q 040925 82 RFSGNLPFDIVVNLPNLKALAIGGNNFFGSIPYSLSNASNLELLDLSVNQFKGNVSIDFSSLKNLLWLNLEQNNLGTGTA 161 (833)
Q Consensus 82 ~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 161 (833)
+++ .+|...|..+++|++|+|++|+|++..+..|.++++|++|+|++|+|+++++..|..+++|++|+|++|+++.++.
T Consensus 94 ~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 172 (251)
T 3m19_A 94 QLA-SLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPH 172 (251)
T ss_dssp CCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred ccc-ccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCH
Confidence 998 8888999999999999999999998888889999999999999999999999899999999999999999987765
Q ss_pred CCcccccccCCCCCCCEEEccCCcCccc
Q 040925 162 TDLDFVTFLTNCSSLKALSLADNQFGGE 189 (833)
Q Consensus 162 ~~~~~~~~l~~l~~L~~L~Ls~N~l~~~ 189 (833)
. .+..+++|++|+|++|++.+.
T Consensus 173 ~------~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 173 G------AFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp T------TTTTCTTCCEEECCSCCBCTT
T ss_pred H------HHhCCCCCCEEEeeCCceeCC
Confidence 3 477899999999999999854
No 338
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.91 E-value=5.2e-24 Score=216.57 Aligned_cols=207 Identities=16% Similarity=0.204 Sum_probs=173.5
Q ss_pred cCcccCCccccCCCCCCEEEccCCcccccCCccCCCCCCCCEEEcCCCc-ccccCCccccCCCCCcEEECCC-ccccccc
Q 040925 10 YLTGQLPDFVGNLSDLEVIRIMGNSLGGKIPTTLGLLRNLVSLNVAENK-FSGMFPRSICNISSLELIQLAL-NRFSGNL 87 (833)
Q Consensus 10 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~-i~~~~~~~~~~l~~L~~L~L~~-N~l~~~~ 87 (833)
.++ .+|. +.. +|++|++++|++++..+..|..+++|++|+|++|+ ++++.+.+|.++++|++|+|++ |+++ .+
T Consensus 22 ~l~-~ip~-~~~--~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~-~i 96 (239)
T 2xwt_C 22 DIQ-RIPS-LPP--STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLT-YI 96 (239)
T ss_dssp SCS-SCCC-CCT--TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCC-EE
T ss_pred Ccc-ccCC-CCC--cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCee-Ec
Confidence 366 5676 544 89999999999988888899999999999999997 9888888999999999999998 9998 88
Q ss_pred CchhhcCCCCccEEEccCCcceeeCCccccCCCCCc---EEEcccC-ccccccCcCccCCCcCc-eEecccccCCCCCCC
Q 040925 88 PFDIVVNLPNLKALAIGGNNFFGSIPYSLSNASNLE---LLDLSVN-QFKGNVSIDFSSLKNLL-WLNLEQNNLGTGTAT 162 (833)
Q Consensus 88 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~---~L~L~~N-~i~~~~~~~~~~l~~L~-~L~L~~N~l~~~~~~ 162 (833)
|...|.++++|++|+|++|.+++ +|. |..+++|+ +|++++| +++.+++..|.++++|+ +|+|++|.++.++..
T Consensus 97 ~~~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~ 174 (239)
T 2xwt_C 97 DPDALKELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGY 174 (239)
T ss_dssp CTTSEECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTT
T ss_pred CHHHhCCCCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHh
Confidence 88899999999999999999985 665 88899998 9999999 99999999999999999 999999999877653
Q ss_pred CcccccccCCCCCCCEEEccCCc-CcccCChhHhhhcccccEEEccCccccccCChhhhcCCCCCeEeccCC
Q 040925 163 DLDFVTFLTNCSSLKALSLADNQ-FGGELPHSIANLSSTVINFGIGRNQISGTIPPGIRNLVNLIGFGAEEN 233 (833)
Q Consensus 163 ~~~~~~~l~~l~~L~~L~Ls~N~-l~~~~p~~~~~l~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~N 233 (833)
. +.. ++|++|+|++|+ ++...+..+..+...++.|++++|++++..+. .+++|+.|+++++
T Consensus 175 ~------~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~---~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 175 A------FNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK---GLEHLKELIARNT 236 (239)
T ss_dssp T------TTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT---TCTTCSEEECTTC
T ss_pred h------cCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh---HhccCceeeccCc
Confidence 2 334 789999999995 98555556666525688999999999854443 4556666666654
No 339
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.91 E-value=5.3e-24 Score=229.52 Aligned_cols=240 Identities=17% Similarity=0.173 Sum_probs=194.9
Q ss_pred cEEEcCCCcCcccCCccccCCCCCCEEEccCCcccccCCccCCCCCCCCEEEcCCCccccc-CCccccCCCCCcE-EECC
Q 040925 2 QTLAVNDNYLTGQLPDFVGNLSDLEVIRIMGNSLGGKIPTTLGLLRNLVSLNVAENKFSGM-FPRSICNISSLEL-IQLA 79 (833)
Q Consensus 2 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~-~~~~~~~l~~L~~-L~L~ 79 (833)
++++.++++|+ .+|..+. +++++|+|++|+|+.+.+++|.++++|++|+|++|++.+. .+.+|.++++|.. +.++
T Consensus 12 ~~v~C~~~~Lt-~iP~~l~--~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp TEEEEESTTCC-SCCTTCC--TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred CEEEecCCCCC-ccCcCcC--CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 57889999999 7887763 6899999999999887788999999999999999998654 4568999999875 6777
Q ss_pred CcccccccCchhhcCCCCccEEEccCCcceeeCCccccCCCCCcEEEccc-CccccccCcCccCCC-cCceEecccccCC
Q 040925 80 LNRFSGNLPFDIVVNLPNLKALAIGGNNFFGSIPYSLSNASNLELLDLSV-NQFKGNVSIDFSSLK-NLLWLNLEQNNLG 157 (833)
Q Consensus 80 ~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~-N~i~~~~~~~~~~l~-~L~~L~L~~N~l~ 157 (833)
.|+|+ .+++++|.++++|++|++++|+|+...+..+....++..|++.+ |+|..++...|..+. .|+.|+|++|+|+
T Consensus 89 ~N~l~-~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~ 167 (350)
T 4ay9_X 89 ANNLL-YINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ 167 (350)
T ss_dssp ETTCC-EECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC
T ss_pred CCccc-ccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc
Confidence 89998 89999999999999999999999988888888888999999965 689999999999886 6899999999998
Q ss_pred CCCCCCcccccccCCCCCCCEEEccC-CcCcccCChhHhhhcccccEEEccCccccccCChhhhcCCCCCeEeccCCccc
Q 040925 158 TGTATDLDFVTFLTNCSSLKALSLAD-NQFGGELPHSIANLSSTVINFGIGRNQISGTIPPGIRNLVNLIGFGAEENQLH 236 (833)
Q Consensus 158 ~~~~~~~~~~~~l~~l~~L~~L~Ls~-N~l~~~~p~~~~~l~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~ 236 (833)
.++... ...++|++|++++ |+++ .+.++.|.++++|+.|+|++|+|+
T Consensus 168 ~i~~~~-------f~~~~L~~l~l~~~n~l~-------------------------~i~~~~f~~l~~L~~LdLs~N~l~ 215 (350)
T 4ay9_X 168 EIHNSA-------FNGTQLDELNLSDNNNLE-------------------------ELPNDVFHGASGPVILDISRTRIH 215 (350)
T ss_dssp EECTTS-------STTEEEEEEECTTCTTCC-------------------------CCCTTTTTTEECCSEEECTTSCCC
T ss_pred CCChhh-------ccccchhHHhhccCCccc-------------------------CCCHHHhccCcccchhhcCCCCcC
Confidence 876643 2445677887764 4444 244467888899999999999999
Q ss_pred ccCCccccCCCCCCEEEcccc-cCcccCCccccCCCCCCeEEeeccc
Q 040925 237 GTIPDAIGELKNLQKLCLFRN-FLQGRIPSGLGNLTKLANLELSSNS 282 (833)
Q Consensus 237 ~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~ 282 (833)
.+.+..|.+ |+.|.+.++ .++ .+| .+..+++|+.++++++.
T Consensus 216 ~lp~~~~~~---L~~L~~l~~~~l~-~lP-~l~~l~~L~~l~l~~~~ 257 (350)
T 4ay9_X 216 SLPSYGLEN---LKKLRARSTYNLK-KLP-TLEKLVALMEASLTYPS 257 (350)
T ss_dssp CCCSSSCTT---CCEEECTTCTTCC-CCC-CTTTCCSCCEEECSCHH
T ss_pred ccChhhhcc---chHhhhccCCCcC-cCC-CchhCcChhhCcCCCCc
Confidence 776666554 455554443 344 556 47889999999998764
No 340
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.90 E-value=2.8e-23 Score=219.34 Aligned_cols=193 Identities=22% Similarity=0.348 Sum_probs=101.5
Q ss_pred CCCCCCCEEEcCCCcccccCCccccCCCCCcEEECCCcccccccCchhhcCCCCccEEEccCCcceeeCCccccCCCCCc
Q 040925 44 GLLRNLVSLNVAENKFSGMFPRSICNISSLELIQLALNRFSGNLPFDIVVNLPNLKALAIGGNNFFGSIPYSLSNASNLE 123 (833)
Q Consensus 44 ~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 123 (833)
..+++|++|++++|.++. +| .+..+++|+.|+|++|.++ .++. +..+++|++|+|++|.+++. + .|..+++|+
T Consensus 38 ~~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~-~~~~--~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~ 110 (308)
T 1h6u_A 38 ADLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQIT-DLAP--LKNLTKITELELSGNPLKNV-S-AIAGLQSIK 110 (308)
T ss_dssp HHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCC-CCGG--GTTCCSCCEEECCSCCCSCC-G-GGTTCTTCC
T ss_pred HHcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCC-CChh--HccCCCCCEEEccCCcCCCc-h-hhcCCCCCC
Confidence 345556666666666553 23 4555566666666666655 3433 45555666666666655532 2 455556666
Q ss_pred EEEcccCccccccCcCccCCCcCceEecccccCCCCCCCCcccccccCCCCCCCEEEccCCcCcccCChhHhhhcccccE
Q 040925 124 LLDLSVNQFKGNVSIDFSSLKNLLWLNLEQNNLGTGTATDLDFVTFLTNCSSLKALSLADNQFGGELPHSIANLSSTVIN 203 (833)
Q Consensus 124 ~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~l~~ 203 (833)
+|+|++|+|+++++ |..+++|++|+|++|.++.++. +..+++|++|+|++|++++
T Consensus 111 ~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--------l~~l~~L~~L~l~~n~l~~--------------- 165 (308)
T 1h6u_A 111 TLDLTSTQITDVTP--LAGLSNLQVLYLDLNQITNISP--------LAGLTNLQYLSIGNAQVSD--------------- 165 (308)
T ss_dssp EEECTTSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--------GGGCTTCCEEECCSSCCCC---------------
T ss_pred EEECCCCCCCCchh--hcCCCCCCEEECCCCccCcCcc--------ccCCCCccEEEccCCcCCC---------------
Confidence 66666666554432 5555555555555555543321 3445555555555555441
Q ss_pred EEccCccccccCChhhhcCCCCCeEeccCCcccccCCccccCCCCCCEEEcccccCcccCCccccCCCCCCeEEeecccc
Q 040925 204 FGIGRNQISGTIPPGIRNLVNLIGFGAEENQLHGTIPDAIGELKNLQKLCLFRNFLQGRIPSGLGNLTKLANLELSSNSL 283 (833)
Q Consensus 204 L~l~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 283 (833)
.+. +..+++|+.|++++|++++..+ +..+++|++|+|++|.+++.. .+..+++|+.|+|++|++
T Consensus 166 -----------~~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i 229 (308)
T 1h6u_A 166 -----------LTP-LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTI 229 (308)
T ss_dssp -----------CGG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEE
T ss_pred -----------Chh-hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCee
Confidence 111 4444555555555555553332 555555555555555555432 255555555555555555
Q ss_pred c
Q 040925 284 Q 284 (833)
Q Consensus 284 ~ 284 (833)
+
T Consensus 230 ~ 230 (308)
T 1h6u_A 230 T 230 (308)
T ss_dssp E
T ss_pred e
Confidence 4
No 341
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.90 E-value=7.2e-26 Score=248.14 Aligned_cols=250 Identities=17% Similarity=0.239 Sum_probs=129.8
Q ss_pred cCCccCCCCCCCCEEEcCCCcccccCC----ccccCCCCCcEEECCCc---ccccccCchh------hcCCCCccEEEcc
Q 040925 38 KIPTTLGLLRNLVSLNVAENKFSGMFP----RSICNISSLELIQLALN---RFSGNLPFDI------VVNLPNLKALAIG 104 (833)
Q Consensus 38 ~~~~~~~~l~~L~~L~L~~n~i~~~~~----~~~~~l~~L~~L~L~~N---~l~~~~~~~~------~~~l~~L~~L~L~ 104 (833)
.++..+..+++|++|+|++|.|+...+ ..|..+++|++|+|++| ++++.+|..+ |..+++|++|+|+
T Consensus 23 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls 102 (386)
T 2ca6_A 23 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS 102 (386)
T ss_dssp TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred HHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECC
Confidence 344445555666666666666654422 23555666666666654 2333333332 3456666666666
Q ss_pred CCccee----eCCccccCCCCCcEEEcccCccccccCcCccC----C---------CcCceEecccccCCCCCCCCcccc
Q 040925 105 GNNFFG----SIPYSLSNASNLELLDLSVNQFKGNVSIDFSS----L---------KNLLWLNLEQNNLGTGTATDLDFV 167 (833)
Q Consensus 105 ~N~l~~----~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~----l---------~~L~~L~L~~N~l~~~~~~~~~~~ 167 (833)
+|.++. .+|..+..+++|++|+|++|.|+......+.. + ++|++|+|++|+++..... .+.
T Consensus 103 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~--~l~ 180 (386)
T 2ca6_A 103 DNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMK--EWA 180 (386)
T ss_dssp SCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHH--HHH
T ss_pred CCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHH--HHH
Confidence 666654 34555666666666666666665443333332 2 5555555555555421110 011
Q ss_pred cccCCCCCCCEEEccCCcCcccCChhHhhhcccccEEEccCccccccCChhhhcCCCCCeEeccCCccc----ccCCccc
Q 040925 168 TFLTNCSSLKALSLADNQFGGELPHSIANLSSTVINFGIGRNQISGTIPPGIRNLVNLIGFGAEENQLH----GTIPDAI 243 (833)
Q Consensus 168 ~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~----~~~~~~~ 243 (833)
..+..+++|++|+|++|+++.. .+. ...+..+..+++|+.|+|++|.++ ..+|..+
T Consensus 181 ~~l~~~~~L~~L~L~~n~l~~~---g~~-----------------~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l 240 (386)
T 2ca6_A 181 KTFQSHRLLHTVKMVQNGIRPE---GIE-----------------HLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIAL 240 (386)
T ss_dssp HHHHHCTTCCEEECCSSCCCHH---HHH-----------------HHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHG
T ss_pred HHHHhCCCcCEEECcCCCCCHh---HHH-----------------HHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHH
Confidence 2344455555555555555410 000 012224555566666666666664 3455556
Q ss_pred cCCCCCCEEEcccccCccc----CCcccc--CCCCCCeEEeecccccC----CCCCCC-CCCCccceeecCCceecc
Q 040925 244 GELKNLQKLCLFRNFLQGR----IPSGLG--NLTKLANLELSSNSLQG----NIPSSL-GNCQNLMSFTASQNKLTG 309 (833)
Q Consensus 244 ~~l~~L~~L~L~~N~l~~~----~~~~~~--~l~~L~~L~L~~N~l~~----~~~~~~-~~l~~L~~L~l~~N~l~~ 309 (833)
..+++|++|+|++|.|++. ++..+. .+++|++|+|++|+++. .+|..+ .++++|+.|++++|++++
T Consensus 241 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~ 317 (386)
T 2ca6_A 241 KSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE 317 (386)
T ss_dssp GGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred ccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCc
Confidence 6666666666666666543 334442 25666666666666654 244444 345666666666666553
No 342
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.90 E-value=4.2e-23 Score=217.97 Aligned_cols=209 Identities=23% Similarity=0.388 Sum_probs=173.9
Q ss_pred cCCCcCcccCCccccCCCCCCEEEccCCcccccCCccCCCCCCCCEEEcCCCcccccCCccccCCCCCcEEECCCccccc
Q 040925 6 VNDNYLTGQLPDFVGNLSDLEVIRIMGNSLGGKIPTTLGLLRNLVSLNVAENKFSGMFPRSICNISSLELIQLALNRFSG 85 (833)
Q Consensus 6 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~ 85 (833)
+..+.++.. ..+..+++|+.|++++|.++. +| .+..+++|++|+|++|++++..+ |.++++|++|+|++|+++
T Consensus 26 l~~~~~~~~--~~~~~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~- 98 (308)
T 1h6u_A 26 AGKSNVTDT--VTQADLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLK- 98 (308)
T ss_dssp TTCSSTTSE--ECHHHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCS-
T ss_pred hCCCCcCce--ecHHHcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCC-
Confidence 344444432 235568899999999999954 45 68999999999999999996544 999999999999999998
Q ss_pred ccCchhhcCCCCccEEEccCCcceeeCCccccCCCCCcEEEcccCccccccCcCccCCCcCceEecccccCCCCCCCCcc
Q 040925 86 NLPFDIVVNLPNLKALAIGGNNFFGSIPYSLSNASNLELLDLSVNQFKGNVSIDFSSLKNLLWLNLEQNNLGTGTATDLD 165 (833)
Q Consensus 86 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 165 (833)
.++ .+..+++|++|+|++|.+++. + .|..+++|++|+|++|+++++.+ +..+++|++|+|++|.++.++.
T Consensus 99 ~~~--~~~~l~~L~~L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~---- 168 (308)
T 1h6u_A 99 NVS--AIAGLQSIKTLDLTSTQITDV-T-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP---- 168 (308)
T ss_dssp CCG--GGTTCTTCCEEECTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG----
T ss_pred Cch--hhcCCCCCCEEECCCCCCCCc-h-hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh----
Confidence 555 478999999999999999864 3 39999999999999999998765 8999999999999999976432
Q ss_pred cccccCCCCCCCEEEccCCcCcccCChhHhhhcccccEEEccCccccccCChhhhcCCCCCeEeccCCcccccCCccccC
Q 040925 166 FVTFLTNCSSLKALSLADNQFGGELPHSIANLSSTVINFGIGRNQISGTIPPGIRNLVNLIGFGAEENQLHGTIPDAIGE 245 (833)
Q Consensus 166 ~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 245 (833)
+.++++|+.|+|++|++++ ++. +..+++|+.|++++|++.+.. .+..
T Consensus 169 ----l~~l~~L~~L~l~~n~l~~--------------------------~~~-l~~l~~L~~L~L~~N~l~~~~--~l~~ 215 (308)
T 1h6u_A 169 ----LANLSKLTTLKADDNKISD--------------------------ISP-LASLPNLIEVHLKNNQISDVS--PLAN 215 (308)
T ss_dssp ----GTTCTTCCEEECCSSCCCC--------------------------CGG-GGGCTTCCEEECTTSCCCBCG--GGTT
T ss_pred ----hcCCCCCCEEECCCCccCc--------------------------Chh-hcCCCCCCEEEccCCccCccc--cccC
Confidence 7789999999999999872 111 677889999999999998665 3889
Q ss_pred CCCCCEEEcccccCcccCCc
Q 040925 246 LKNLQKLCLFRNFLQGRIPS 265 (833)
Q Consensus 246 l~~L~~L~L~~N~l~~~~~~ 265 (833)
+++|+.|+|++|.+++ .|.
T Consensus 216 l~~L~~L~l~~N~i~~-~~~ 234 (308)
T 1h6u_A 216 TSNLFIVTLTNQTITN-QPV 234 (308)
T ss_dssp CTTCCEEEEEEEEEEC-CCE
T ss_pred CCCCCEEEccCCeeec-CCe
Confidence 9999999999999984 443
No 343
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.89 E-value=2.3e-23 Score=220.65 Aligned_cols=229 Identities=17% Similarity=0.194 Sum_probs=127.2
Q ss_pred CCCEEEccCCcCcccCChhHhhh--cccccEEEccCccccccCChhh--hcCCCCCeEeccCCcccccCC----ccccCC
Q 040925 175 SLKALSLADNQFGGELPHSIANL--SSTVINFGIGRNQISGTIPPGI--RNLVNLIGFGAEENQLHGTIP----DAIGEL 246 (833)
Q Consensus 175 ~L~~L~Ls~N~l~~~~p~~~~~l--~~~l~~L~l~~n~i~~~~~~~~--~~l~~L~~L~L~~N~l~~~~~----~~~~~l 246 (833)
.++.|.+.++.++...-..+... ...+++|++++|.+.+..|..+ ..+++|++|+|++|++.+..+ ..+..+
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~ 144 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK 144 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence 46666666666542111111110 0124455555555555555555 556666666666666654333 233455
Q ss_pred CCCCEEEcccccCcccCCccccCCCCCCeEEeecccccCC---C-CCCCCCCCccceeecCCceecccCCcccccccccc
Q 040925 247 KNLQKLCLFRNFLQGRIPSGLGNLTKLANLELSSNSLQGN---I-PSSLGNCQNLMSFTASQNKLTGALPHQLLSITTLS 322 (833)
Q Consensus 247 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~---~-~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~ll 322 (833)
++|++|+|++|.+.+..+..|.++++|++|+|++|++.+. . +..+..+++|++|++++|+++ .+|...
T Consensus 145 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~------- 216 (310)
T 4glp_A 145 PGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVC------- 216 (310)
T ss_dssp SCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHH-------
T ss_pred cCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHH-------
Confidence 6666666666666655555666666666666666665421 1 122345555555555555554 222110
Q ss_pred eeeecCCCccCCCCCcccccCCCcCEEeccCCcCCCCCCccccCC---CCCcEEeecCCccccccCccccCCCCCCeEEc
Q 040925 323 LYLDLSNNLLNGSLPLQVGHLKNLVILDISSNQFSGVIPGTLSTC---VCLEYLDISSNSFHGVIPLSLSFLKSIKELNV 399 (833)
Q Consensus 323 ~~L~ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l---~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l 399 (833)
+..++.+++|++|+|++|++++..|..+..+ ++|++|+|++|+|+. +|..+. ++|+.|+|
T Consensus 217 --------------~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~-lp~~~~--~~L~~L~L 279 (310)
T 4glp_A 217 --------------AALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQ-VPKGLP--AKLRVLDL 279 (310)
T ss_dssp --------------HHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCS-CCSCCC--SCCSCEEC
T ss_pred --------------HHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCc-hhhhhc--CCCCEEEC
Confidence 0024556677777777777776656555555 577777777777773 344443 67777777
Q ss_pred cCcccCCCchhhhcCCCCCceEECccCcCcc
Q 040925 400 SSNNLSGQIPEFLKNLSVLEFLSLSYNHFEG 430 (833)
Q Consensus 400 ~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~ 430 (833)
++|+|++. |. +..+++|+.|++++|+|+.
T Consensus 280 s~N~l~~~-~~-~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 280 SSNRLNRA-PQ-PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp CSCCCCSC-CC-TTSCCCCSCEECSSTTTSC
T ss_pred CCCcCCCC-ch-hhhCCCccEEECcCCCCCC
Confidence 77777754 32 5667777777777777763
No 344
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.89 E-value=1.2e-23 Score=222.84 Aligned_cols=227 Identities=18% Similarity=0.179 Sum_probs=173.5
Q ss_pred CcEEEcCCCcCcccC-Cc--cccCCCCCCEEEccCCcccccCCccC--CCCCCCCEEEcCCCcccccCC----ccccCCC
Q 040925 1 LQTLAVNDNYLTGQL-PD--FVGNLSDLEVIRIMGNSLGGKIPTTL--GLLRNLVSLNVAENKFSGMFP----RSICNIS 71 (833)
Q Consensus 1 L~~L~l~~n~l~~~~-~~--~~~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~L~~n~i~~~~~----~~~~~l~ 71 (833)
++.|.+.++.++... .. .+..+++|++|++++|++++..|..+ ..+++|++|+|++|++++..+ ..+..++
T Consensus 66 l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~ 145 (310)
T 4glp_A 66 VRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKP 145 (310)
T ss_dssp CCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCS
T ss_pred eeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhcc
Confidence 356777777765211 11 12334679999999999998999988 899999999999999987555 5567899
Q ss_pred CCcEEECCCcccccccCchhhcCCCCccEEEccCCccee---eC-CccccCCCCCcEEEcccCccccccCc---CccCCC
Q 040925 72 SLELIQLALNRFSGNLPFDIVVNLPNLKALAIGGNNFFG---SI-PYSLSNASNLELLDLSVNQFKGNVSI---DFSSLK 144 (833)
Q Consensus 72 ~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~---~~-~~~~~~l~~L~~L~L~~N~i~~~~~~---~~~~l~ 144 (833)
+|++|+|++|+++ .++...|.++++|++|+|++|++.+ .. +..+..+++|++|+|++|+|+.++.. .+..++
T Consensus 146 ~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~ 224 (310)
T 4glp_A 146 GLKVLSIAQAHSP-AFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGV 224 (310)
T ss_dssp CCCEEEEECCSSC-CCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTC
T ss_pred CCCEEEeeCCCcc-hhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCC
Confidence 9999999999997 7787888999999999999999764 22 33457899999999999999855443 367889
Q ss_pred cCceEecccccCCCCCCCCcccccccCCCCCCCEEEccCCcCcccCChhHhhhcccccEEEccCccccccCChhhhcCCC
Q 040925 145 NLLWLNLEQNNLGTGTATDLDFVTFLTNCSSLKALSLADNQFGGELPHSIANLSSTVINFGIGRNQISGTIPPGIRNLVN 224 (833)
Q Consensus 145 ~L~~L~L~~N~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~l~~L~l~~n~i~~~~~~~~~~l~~ 224 (833)
+|++|+|++|+++...+..+ ..+..+++|++|+|++|+++ .+|.. +. ++
T Consensus 225 ~L~~L~Ls~N~l~~~~p~~~---~~~~~~~~L~~L~Ls~N~l~-~lp~~-------------------------~~--~~ 273 (310)
T 4glp_A 225 QPHSLDLSHNSLRATVNPSA---PRCMWSSALNSLNLSFAGLE-QVPKG-------------------------LP--AK 273 (310)
T ss_dssp CCSSEECTTSCCCCCCCSCC---SSCCCCTTCCCEECCSSCCC-SCCSC-------------------------CC--SC
T ss_pred CCCEEECCCCCCCccchhhH---HhccCcCcCCEEECCCCCCC-chhhh-------------------------hc--CC
Confidence 99999999999987633221 12333479999999999998 44432 21 57
Q ss_pred CCeEeccCCcccccCCccccCCCCCCEEEcccccCcc
Q 040925 225 LIGFGAEENQLHGTIPDAIGELKNLQKLCLFRNFLQG 261 (833)
Q Consensus 225 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 261 (833)
|+.|+|++|+++++ |. +..+++|++|+|++|.|+.
T Consensus 274 L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 274 LRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp CSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTSC
T ss_pred CCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCCC
Confidence 78888888888754 33 6777888888888888863
No 345
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.89 E-value=9.1e-23 Score=208.91 Aligned_cols=181 Identities=22% Similarity=0.245 Sum_probs=131.5
Q ss_pred CCCCeEeccCCcccccCCccccCCCCCCEEEcccccCcccCCccccCCCCCCeEEeecccccCCCCCCCCCCCccceeec
Q 040925 223 VNLIGFGAEENQLHGTIPDAIGELKNLQKLCLFRNFLQGRIPSGLGNLTKLANLELSSNSLQGNIPSSLGNCQNLMSFTA 302 (833)
Q Consensus 223 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l 302 (833)
.+.++++++++.++. +|..+. ++|+.|+|++|.+++..+..|.++++|++|+|++|+|++..+..|..+++|+.|++
T Consensus 14 ~~~~~l~~~~~~l~~-~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 90 (251)
T 3m19_A 14 EGKKEVDCQGKSLDS-VPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL 90 (251)
T ss_dssp GGGTEEECTTCCCSS-CCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCeEEecCCCCccc-cCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEEC
Confidence 346678888888874 444443 57788888888888777777888888888888888887777777777777776666
Q ss_pred CCceecccCCcccccccccceeeecCCCccCCCCCcccccCCCcCEEeccCCcCCCCCCccccCCCCCcEEeecCCcccc
Q 040925 303 SQNKLTGALPHQLLSITTLSLYLDLSNNLLNGSLPLQVGHLKNLVILDISSNQFSGVIPGTLSTCVCLEYLDISSNSFHG 382 (833)
Q Consensus 303 ~~N~l~~~~p~~~~~~~~ll~~L~ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 382 (833)
++|+++ +..+..|..+++|++|+|++|+|++..+..|..+++|++|+|++|+|++
T Consensus 91 ~~n~l~-------------------------~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 145 (251)
T 3m19_A 91 ANNQLA-------------------------SLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQS 145 (251)
T ss_dssp TTSCCC-------------------------CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred CCCccc-------------------------ccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCc
Confidence 666655 3444556667777777777777776666667777777777777777776
Q ss_pred ccCccccCCCCCCeEEccCcccCCCchhhhcCCCCCceEECccCcCccc
Q 040925 383 VIPLSLSFLKSIKELNVSSNNLSGQIPEFLKNLSVLEFLSLSYNHFEGE 431 (833)
Q Consensus 383 ~~~~~~~~l~~L~~L~l~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~ 431 (833)
+.+..|..+++|+.|+|++|++++..+..+..+++|+.|++++|+|+|.
T Consensus 146 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 146 IPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred cCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 6666677777777777777777776666777777777777777777776
No 346
>1zar_A RIO2 kinase; serine kinase, winged-helix, RIO domain, ADP-Mn complex, rRNA processing, transferase; HET: ADP; 1.75A {Archaeoglobus fulgidus} SCOP: a.4.5.56 d.144.1.9 PDB: 1tqi_A* 1tqp_A* 1tqm_A* 1zao_A*
Probab=99.89 E-value=9.9e-24 Score=218.91 Aligned_cols=153 Identities=18% Similarity=0.153 Sum_probs=120.8
Q ss_pred HHHHHHhcCCccCceeccCcceEEEEEEECCCceEEEEEEeeccCC------------------cchhHHHHHHHHHhhc
Q 040925 524 AELSKATGEFSSSNMIGQGSFGYVYKGTLGEDEMIVAVKVINLKYK------------------GASRSFVAECEALRNI 585 (833)
Q Consensus 524 ~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~------------------~~~~~~~~E~~~l~~l 585 (833)
..+......|++.+.||+|+||.||+|.+ .+|+.||||+++.... .....+.+|+++++++
T Consensus 83 ~~~~~~~~~~~~~~~iG~G~~g~Vy~~~~-~~g~~valK~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~E~~~l~~l 161 (282)
T 1zar_A 83 HRLVRSGKVDAIGKLMGEGKESAVFNCYS-EKFGECVVKFHKVGHTSFKKVKEKRDYGDLHFSVLAIRSARNEFRALQKL 161 (282)
T ss_dssp HHHHHTTSCSEEEEEEEECSSEEEEEEEE-TTTEEEEEEEECC------CCCC-------CHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHhCCeEEEecCEeccCCCceEEEEEe-CCCCEEEEEEEECCCCchhhhhhhhhhcchhhHHHHHHHHHHHHHHHHhc
Confidence 34444455677789999999999999999 6899999999964321 1235688999999999
Q ss_pred CCCccceEeeEeecCCCCCCceEeEEEEecCCCChhhhhccCCCccccccCCHHHHHHHHHHHHHHHHHHhhcCCCCcee
Q 040925 586 RHRNLIKIITICSSTDFKGTDFKAFVFEYMENGSLKDWLHQSDDQVEVCKLSLIQRVNIAIDVASAMEYLHHHCQPPMVH 665 (833)
Q Consensus 586 ~h~niv~~~~~~~~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~gL~~LH~~~~~~ivH 665 (833)
+| +++.+++.. +..++||||++||+|.+ +... ....++.|++.||.|||+. ||+|
T Consensus 162 ~~---~~v~~~~~~------~~~~lvmE~~~g~~L~~-l~~~------------~~~~i~~qi~~~l~~lH~~---giiH 216 (282)
T 1zar_A 162 QG---LAVPKVYAW------EGNAVLMELIDAKELYR-VRVE------------NPDEVLDMILEEVAKFYHR---GIVH 216 (282)
T ss_dssp TT---SSSCCEEEE------ETTEEEEECCCCEEGGG-CCCS------------CHHHHHHHHHHHHHHHHHT---TEEC
T ss_pred cC---CCcCeEEec------cceEEEEEecCCCcHHH-cchh------------hHHHHHHHHHHHHHHHHHC---CCEe
Confidence 94 555554322 24689999999999998 4321 2346999999999999999 9999
Q ss_pred eCCCCCCeeecCCCcEEEcccccccccCcccccccccCCCccccccccccccCccccCC
Q 040925 666 GDLKPSNVLLDHDMVAHVCDFGLAKFLSDHQLDTAVKTPSSSIGLKGTVGYVAPEYGMG 724 (833)
Q Consensus 666 ~Dlkp~NIll~~~~~~kL~DfG~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~ 724 (833)
|||||+||+++ ++.+||+|||+|+ .+..|+|||++.+
T Consensus 217 rDlkp~NILl~-~~~vkl~DFG~a~---------------------~~~~~~a~e~l~r 253 (282)
T 1zar_A 217 GDLSQYNVLVS-EEGIWIIDFPQSV---------------------EVGEEGWREILER 253 (282)
T ss_dssp SCCSTTSEEEE-TTEEEECCCTTCE---------------------ETTSTTHHHHHHH
T ss_pred CCCCHHHEEEE-CCcEEEEECCCCe---------------------ECCCCCHHHHHHH
Confidence 99999999999 9999999999997 3455789997643
No 347
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.88 E-value=8.3e-24 Score=227.24 Aligned_cols=225 Identities=19% Similarity=0.236 Sum_probs=109.9
Q ss_pred CCEEEccCCcccccCCccCCCC--CCCCEEEcCCCcccccCCccccCCCCCcEEECCCcccccccCchhhcCCCCccEEE
Q 040925 25 LEVIRIMGNSLGGKIPTTLGLL--RNLVSLNVAENKFSGMFPRSICNISSLELIQLALNRFSGNLPFDIVVNLPNLKALA 102 (833)
Q Consensus 25 L~~L~l~~n~l~~~~~~~~~~l--~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~ 102 (833)
++.|++++|.+. +..+..+ ++++.|++++|.+++..+. +.++++|+.|+|++|.+++......+..+++|++|+
T Consensus 49 ~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~ 124 (336)
T 2ast_B 49 WQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLS 124 (336)
T ss_dssp SSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEE
T ss_pred heeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEe
Confidence 555666666553 3444444 5566666666666544333 445566666666666554321223345555666666
Q ss_pred ccCCcceeeCCccccCCCCCcEEEcccC-ccccc-cCcCccCCCcCceEecccc-cCCCCCCCCcccccccCCCC-CCCE
Q 040925 103 IGGNNFFGSIPYSLSNASNLELLDLSVN-QFKGN-VSIDFSSLKNLLWLNLEQN-NLGTGTATDLDFVTFLTNCS-SLKA 178 (833)
Q Consensus 103 L~~N~l~~~~~~~~~~l~~L~~L~L~~N-~i~~~-~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~l~~l~-~L~~ 178 (833)
|++|.+++..+..|+.+++|++|+|++| .+++. .+..+.++++|++|+|++| .++.. ..+..+..++ +|++
T Consensus 125 L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~-----~~~~~~~~l~~~L~~ 199 (336)
T 2ast_B 125 LEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEK-----HVQVAVAHVSETITQ 199 (336)
T ss_dssp CTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHH-----HHHHHHHHSCTTCCE
T ss_pred CcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChH-----HHHHHHHhcccCCCE
Confidence 6666555555555555555555555555 34431 2223444455555555555 44320 0122233444 4444
Q ss_pred EEccCCcCcccCChhHhhhcccccEEEccCcccc-ccCChhhhcCCCCCeEeccCCc-ccccCCccccCCCCCCEEEccc
Q 040925 179 LSLADNQFGGELPHSIANLSSTVINFGIGRNQIS-GTIPPGIRNLVNLIGFGAEENQ-LHGTIPDAIGELKNLQKLCLFR 256 (833)
Q Consensus 179 L~Ls~N~l~~~~p~~~~~l~~~l~~L~l~~n~i~-~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~ 256 (833)
|+|++|.+ .++ +.++..+..+++|+.|++++|. +++..+..+..+++|++|+|++
T Consensus 200 L~l~~~~~-----------------------~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~ 256 (336)
T 2ast_B 200 LNLSGYRK-----------------------NLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSR 256 (336)
T ss_dssp EECCSCGG-----------------------GSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTT
T ss_pred EEeCCCcc-----------------------cCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCC
Confidence 44444421 111 1223344455555566665555 4444455555555566666655
Q ss_pred cc-CcccCCccccCCCCCCeEEeecc
Q 040925 257 NF-LQGRIPSGLGNLTKLANLELSSN 281 (833)
Q Consensus 257 N~-l~~~~~~~~~~l~~L~~L~L~~N 281 (833)
|. +.......+.++++|+.|++++|
T Consensus 257 ~~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 257 CYDIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp CTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred CCCCCHHHHHHHhcCCCCCEEeccCc
Confidence 53 21111113445555555555555
No 348
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.88 E-value=1.1e-22 Score=201.85 Aligned_cols=181 Identities=22% Similarity=0.268 Sum_probs=140.5
Q ss_pred cEEEcCCCcCcccCCccccCCCCCCEEEccCCcccccCCccCCCCCCCCEEEcCCCcccccCCccccCCCCCcEEECCCc
Q 040925 2 QTLAVNDNYLTGQLPDFVGNLSDLEVIRIMGNSLGGKIPTTLGLLRNLVSLNVAENKFSGMFPRSICNISSLELIQLALN 81 (833)
Q Consensus 2 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N 81 (833)
+.+++++++++ .+|..+ .++|++|++++|++++..+..|+.+++|++|+|++|+++++.+..|.++++|++|+|++|
T Consensus 10 ~~v~c~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 86 (208)
T 2o6s_A 10 TTVECYSQGRT-SVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN 86 (208)
T ss_dssp TEEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCCCcc-CCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC
Confidence 46777888887 456544 347888888888887777777888888888888888888776777788888888888888
Q ss_pred ccccccCchhhcCCCCccEEEccCCcceeeCCccccCCCCCcEEEcccCccccccCcCccCCCcCceEecccccCCCCCC
Q 040925 82 RFSGNLPFDIVVNLPNLKALAIGGNNFFGSIPYSLSNASNLELLDLSVNQFKGNVSIDFSSLKNLLWLNLEQNNLGTGTA 161 (833)
Q Consensus 82 ~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 161 (833)
+++ .+|...|.++++|++|+|++|+|++..+..|.++++|++|+|++|+|+++++..|..+++|++|+|++|.+.
T Consensus 87 ~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~---- 161 (208)
T 2o6s_A 87 QLQ-SLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD---- 161 (208)
T ss_dssp CCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC----
T ss_pred cCC-ccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee----
Confidence 887 777777788888888888888888766767888888888888888888777777888888888888888653
Q ss_pred CCcccccccCCCCCCCEEEccCCcCcccCChhHhhhcc
Q 040925 162 TDLDFVTFLTNCSSLKALSLADNQFGGELPHSIANLSS 199 (833)
Q Consensus 162 ~~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 199 (833)
..+++|++|+++.|++++.+|..++.+..
T Consensus 162 ---------~~~~~l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 162 ---------CTCPGIRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp ---------CCTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred ---------cCCCCHHHHHHHHHhCCceeeccCccccC
Confidence 35567777888888887777776665543
No 349
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.88 E-value=1e-23 Score=226.53 Aligned_cols=254 Identities=20% Similarity=0.266 Sum_probs=200.0
Q ss_pred CcEEEcCCCcCcccCCccccCC--CCCCEEEccCCcccccCCccCCCCCCCCEEEcCCCccccc-CCccccCCCCCcEEE
Q 040925 1 LQTLAVNDNYLTGQLPDFVGNL--SDLEVIRIMGNSLGGKIPTTLGLLRNLVSLNVAENKFSGM-FPRSICNISSLELIQ 77 (833)
Q Consensus 1 L~~L~l~~n~l~~~~~~~~~~l--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~-~~~~~~~l~~L~~L~ 77 (833)
+++|++++|.+. |..+..+ ++++.|++++|.+.+..+. +..+++|++|+|++|.+++. .|..+.++++|++|+
T Consensus 49 ~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~ 124 (336)
T 2ast_B 49 WQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLS 124 (336)
T ss_dssp SSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEE
T ss_pred heeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEe
Confidence 468999999887 5677777 8999999999999776665 66799999999999999865 888899999999999
Q ss_pred CCCcccccccCchhhcCCCCccEEEccCC-ccee-eCCccccCCCCCcEEEcccC-ccccc-cCcCccCCC-cCceEecc
Q 040925 78 LALNRFSGNLPFDIVVNLPNLKALAIGGN-NFFG-SIPYSLSNASNLELLDLSVN-QFKGN-VSIDFSSLK-NLLWLNLE 152 (833)
Q Consensus 78 L~~N~l~~~~~~~~~~~l~~L~~L~L~~N-~l~~-~~~~~~~~l~~L~~L~L~~N-~i~~~-~~~~~~~l~-~L~~L~L~ 152 (833)
|++|.+++..+ ..+..+++|++|+|++| .+++ ..+..+.++++|++|+|++| .+++. .+..+..++ +|++|+|+
T Consensus 125 L~~~~l~~~~~-~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~ 203 (336)
T 2ast_B 125 LEGLRLSDPIV-NTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLS 203 (336)
T ss_dssp CTTCBCCHHHH-HHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECC
T ss_pred CcCcccCHHHH-HHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeC
Confidence 99999985544 45678999999999999 6775 26677889999999999999 99864 355688899 99999999
Q ss_pred ccc--CCCCCCCCcccccccCCCCCCCEEEccCCc-CcccCChhHhhhcccccEEEccCccccccCChhhhcCCCCCeEe
Q 040925 153 QNN--LGTGTATDLDFVTFLTNCSSLKALSLADNQ-FGGELPHSIANLSSTVINFGIGRNQISGTIPPGIRNLVNLIGFG 229 (833)
Q Consensus 153 ~N~--l~~~~~~~~~~~~~l~~l~~L~~L~Ls~N~-l~~~~p~~~~~l~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~ 229 (833)
+|. ++. ...+..+.++++|++|+|++|. +++ ..+..+..+++|+.|+
T Consensus 204 ~~~~~~~~-----~~l~~~~~~~~~L~~L~l~~~~~l~~-------------------------~~~~~l~~l~~L~~L~ 253 (336)
T 2ast_B 204 GYRKNLQK-----SDLSTLVRRCPNLVHLDLSDSVMLKN-------------------------DCFQEFFQLNYLQHLS 253 (336)
T ss_dssp SCGGGSCH-----HHHHHHHHHCTTCSEEECTTCTTCCG-------------------------GGGGGGGGCTTCCEEE
T ss_pred CCcccCCH-----HHHHHHHhhCCCCCEEeCCCCCcCCH-------------------------HHHHHHhCCCCCCEee
Confidence 994 432 1234556788999999999998 553 2334566778888888
Q ss_pred ccCCc-ccccCCccccCCCCCCEEEcccccCcccCCccccCC-CCCCeEEeecccccCCCCCCCCC
Q 040925 230 AEENQ-LHGTIPDAIGELKNLQKLCLFRNFLQGRIPSGLGNL-TKLANLELSSNSLQGNIPSSLGN 293 (833)
Q Consensus 230 L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l-~~L~~L~L~~N~l~~~~~~~~~~ 293 (833)
+++|. +.......+..+++|++|++++| ++. ..+..+ ..|+.|++++|++++..|..++.
T Consensus 254 l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~---~~~~~l~~~l~~L~l~~n~l~~~~~~~~~~ 315 (336)
T 2ast_B 254 LSRCYDIIPETLLELGEIPTLKTLQVFGI-VPD---GTLQLLKEALPHLQINCSHFTTIARPTIGN 315 (336)
T ss_dssp CTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCT---TCHHHHHHHSTTSEESCCCSCCTTCSSCSS
T ss_pred CCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCH---HHHHHHHhhCcceEEecccCccccCCcccc
Confidence 88885 33222236788899999999988 432 334444 34777778999998888877665
No 350
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.88 E-value=1.2e-24 Score=238.28 Aligned_cols=243 Identities=20% Similarity=0.238 Sum_probs=148.3
Q ss_pred cccCCCCCCCEEEccCCcCcccCChhHhhhcccccEEEccCccccccCChhhhcCCCCCeEeccCC---cccccCCccc-
Q 040925 168 TFLTNCSSLKALSLADNQFGGELPHSIANLSSTVINFGIGRNQISGTIPPGIRNLVNLIGFGAEEN---QLHGTIPDAI- 243 (833)
Q Consensus 168 ~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~N---~l~~~~~~~~- 243 (833)
..+..+++|++|+|++|+++...+..++ ..|..+++|+.|+|++| ++.+.+|..+
T Consensus 26 ~~l~~~~~L~~L~L~~n~i~~~~~~~l~---------------------~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~ 84 (386)
T 2ca6_A 26 AVLLEDDSVKEIVLSGNTIGTEAARWLS---------------------ENIASKKDLEIAEFSDIFTGRVKDEIPEALR 84 (386)
T ss_dssp HHHHHCSCCCEEECTTSEECHHHHHHHH---------------------HTTTTCTTCCEEECCSCCTTSCGGGSHHHHH
T ss_pred HHHhcCCCccEEECCCCCCCHHHHHHHH---------------------HHHHhCCCccEEeCcccccCccccchhHHHH
Confidence 4456677777777777777644333322 22445556666666664 2333334333
Q ss_pred ------cCCCCCCEEEcccccCcc----cCCccccCCCCCCeEEeecccccCCCCCCCC----CC---------Ccccee
Q 040925 244 ------GELKNLQKLCLFRNFLQG----RIPSGLGNLTKLANLELSSNSLQGNIPSSLG----NC---------QNLMSF 300 (833)
Q Consensus 244 ------~~l~~L~~L~L~~N~l~~----~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~----~l---------~~L~~L 300 (833)
..+++|++|+|++|.+++ .++..+..+++|++|+|++|.++...+..+. .+ ++|++|
T Consensus 85 ~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L 164 (386)
T 2ca6_A 85 LLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSI 164 (386)
T ss_dssp HHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEE
T ss_pred HHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEE
Confidence 556666666666666664 2455556666666666666666533222222 22 566666
Q ss_pred ecCCceec-ccCC---cccccccccceeeecCCCccCC-----CCCcccccCCCcCEEeccCCcCC----CCCCccccCC
Q 040925 301 TASQNKLT-GALP---HQLLSITTLSLYLDLSNNLLNG-----SLPLQVGHLKNLVILDISSNQFS----GVIPGTLSTC 367 (833)
Q Consensus 301 ~l~~N~l~-~~~p---~~~~~~~~ll~~L~ls~N~l~~-----~~~~~~~~l~~L~~L~ls~N~l~----~~~~~~~~~l 367 (833)
++++|+++ +.+| ..+.....+ ++|++++|.++. ..+..+..+++|+.|+|++|.++ ..+|..+..+
T Consensus 165 ~L~~n~l~~~~~~~l~~~l~~~~~L-~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~ 243 (386)
T 2ca6_A 165 ICGRNRLENGSMKEWAKTFQSHRLL-HTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSW 243 (386)
T ss_dssp ECCSSCCTGGGHHHHHHHHHHCTTC-CEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGC
T ss_pred ECCCCCCCcHHHHHHHHHHHhCCCc-CEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccC
Confidence 66666665 2233 233334444 566666666651 23336677778888888888874 4556677777
Q ss_pred CCCcEEeecCCccccc----cCcccc--CCCCCCeEEccCcccCC----Cchhhh-cCCCCCceEECccCcCcccc
Q 040925 368 VCLEYLDISSNSFHGV----IPLSLS--FLKSIKELNVSSNNLSG----QIPEFL-KNLSVLEFLSLSYNHFEGEV 432 (833)
Q Consensus 368 ~~L~~L~Ls~N~l~~~----~~~~~~--~l~~L~~L~l~~N~l~~----~~p~~l-~~l~~L~~L~l~~N~l~~~~ 432 (833)
++|++|+|++|++++. ++..+. .+++|+.|+|++|.+++ .+|..+ .++++|+.|++++|++++..
T Consensus 244 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 244 PNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp TTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred CCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 8888888888887754 344553 37778888888888876 366666 56778888888888777543
No 351
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.86 E-value=1.6e-21 Score=193.50 Aligned_cols=153 Identities=21% Similarity=0.240 Sum_probs=122.5
Q ss_pred CCEEEccCCcccccCCccCCCCCCCCEEEcCCCcccccCCccccCCCCCcEEECCCcccccccCchhhcCCCCccEEEcc
Q 040925 25 LEVIRIMGNSLGGKIPTTLGLLRNLVSLNVAENKFSGMFPRSICNISSLELIQLALNRFSGNLPFDIVVNLPNLKALAIG 104 (833)
Q Consensus 25 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~ 104 (833)
-+.++.+++.++ .+|..+ .++|++|+|++|+++++.+..|.++++|++|+|++|+++ .+|...|..+++|++|+|+
T Consensus 9 ~~~v~c~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls 84 (208)
T 2o6s_A 9 GTTVECYSQGRT-SVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLS 84 (208)
T ss_dssp TTEEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECC
T ss_pred CCEEEecCCCcc-CCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccC-ccChhhcCCCCCcCEEECC
Confidence 357888888884 455444 358899999999998777777888999999999999887 7788888888889999999
Q ss_pred CCcceeeCCccccCCCCCcEEEcccCccccccCcCccCCCcCceEecccccCCCCCCCCcccccccCCCCCCCEEEccCC
Q 040925 105 GNNFFGSIPYSLSNASNLELLDLSVNQFKGNVSIDFSSLKNLLWLNLEQNNLGTGTATDLDFVTFLTNCSSLKALSLADN 184 (833)
Q Consensus 105 ~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~N 184 (833)
+|++++..+..|.++++|++|+|++|+|+++++..|..+++|++|+|++|+++.++.. .+..+++|++|+|++|
T Consensus 85 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~------~~~~l~~L~~L~l~~N 158 (208)
T 2o6s_A 85 TNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDG------VFDRLTSLQYIWLHDN 158 (208)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTT------TTTTCTTCCEEECCSC
T ss_pred CCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHH------HhccCCCccEEEecCC
Confidence 8888877777788888888888888888888887788888888888888888765542 3566777788887777
Q ss_pred cCc
Q 040925 185 QFG 187 (833)
Q Consensus 185 ~l~ 187 (833)
.+.
T Consensus 159 ~~~ 161 (208)
T 2o6s_A 159 PWD 161 (208)
T ss_dssp CBC
T ss_pred Cee
Confidence 765
No 352
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.86 E-value=3.2e-21 Score=192.66 Aligned_cols=152 Identities=22% Similarity=0.299 Sum_probs=103.1
Q ss_pred cEEEcCCCcCcccCCccccCCCCCCEEEccCCcccccCCccCCCCCCCCEEEcCCCcccccCCccccCCCCCcEEECCCc
Q 040925 2 QTLAVNDNYLTGQLPDFVGNLSDLEVIRIMGNSLGGKIPTTLGLLRNLVSLNVAENKFSGMFPRSICNISSLELIQLALN 81 (833)
Q Consensus 2 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N 81 (833)
+.+++++++++ .+|..+. ++|+.|++++|+|++..+..|..+++|++|+|++|+|+++.|.+|.++++|++|+|++|
T Consensus 14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 35667777777 4555544 46777777777776666666777777777777777777666777777777777777777
Q ss_pred ccccccCchhhcCCCCccEEEccCCcceeeCCccccCCCCCcEEEcccCccccccCcCccCCCcCceEecccccCC
Q 040925 82 RFSGNLPFDIVVNLPNLKALAIGGNNFFGSIPYSLSNASNLELLDLSVNQFKGNVSIDFSSLKNLLWLNLEQNNLG 157 (833)
Q Consensus 82 ~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~ 157 (833)
+|+ .+|..+|.++++|++|+|++|+|++..|..|.++++|++|+|++|+|+++.+..|..+++|++|+|++|.+.
T Consensus 91 ~l~-~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 91 KIT-ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp CCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred cCC-ccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 776 666666666777777777777776666666666777777777777776666666666666666666666553
No 353
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.85 E-value=3.2e-21 Score=208.60 Aligned_cols=180 Identities=18% Similarity=0.209 Sum_probs=89.9
Q ss_pred CEEEccCCcccccCCccCCCCCCCCEEEcCCCcccccCCcccc-CCCCCcEEECCCcccccccCchhhcCCCCccEEEcc
Q 040925 26 EVIRIMGNSLGGKIPTTLGLLRNLVSLNVAENKFSGMFPRSIC-NISSLELIQLALNRFSGNLPFDIVVNLPNLKALAIG 104 (833)
Q Consensus 26 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~ 104 (833)
+++++++|.++ .+|..+. .+++.|+|++|+|+++.+..|. ++++|+.|+|++|+|+ .++...|.++++|++|+|+
T Consensus 21 ~~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~-~i~~~~~~~l~~L~~L~Ls 96 (361)
T 2xot_A 21 NILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLS 96 (361)
T ss_dssp TEEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECC
T ss_pred CEEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCC-ccChhhccCCCCCCEEECC
Confidence 34555555552 3343332 2355555555555544444454 5555555555555554 4444455555555555555
Q ss_pred CCcceeeCCccccCCCCCcEEEcccCccccccCcCccCCCcCceEecccccCCCCCCCCcccccccCCCCCCCEEEccCC
Q 040925 105 GNNFFGSIPYSLSNASNLELLDLSVNQFKGNVSIDFSSLKNLLWLNLEQNNLGTGTATDLDFVTFLTNCSSLKALSLADN 184 (833)
Q Consensus 105 ~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~N 184 (833)
+|+|+.+.+..|.++++|++|+|++|+|+.+.+..|.++++|++|+|++|+|+.++...+ ..+..+++|+.|+|++|
T Consensus 97 ~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~---~~~~~l~~L~~L~L~~N 173 (361)
T 2xot_A 97 SNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELI---KDGNKLPKLMLLDLSSN 173 (361)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGT---C----CTTCCEEECCSS
T ss_pred CCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHh---cCcccCCcCCEEECCCC
Confidence 555554444455555555555555555555555555555555555555555554443210 01134555666666666
Q ss_pred cCcccCChhHhhhccc-ccEEEccCcccc
Q 040925 185 QFGGELPHSIANLSST-VINFGIGRNQIS 212 (833)
Q Consensus 185 ~l~~~~p~~~~~l~~~-l~~L~l~~n~i~ 212 (833)
+|+...+..+..+... +..|++++|.+.
T Consensus 174 ~l~~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 174 KLKKLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CCCCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred CCCccCHHHhhhccHhhcceEEecCCCcc
Confidence 6653333344444332 344566666554
No 354
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.85 E-value=8.3e-21 Score=214.81 Aligned_cols=195 Identities=26% Similarity=0.305 Sum_probs=153.2
Q ss_pred CCCEEEccCCcccccCCccCCCCCCCCEEEcCCCcccccCCccccCCCCCcEEECCCcccccccCchhhcCCCCccEEEc
Q 040925 24 DLEVIRIMGNSLGGKIPTTLGLLRNLVSLNVAENKFSGMFPRSICNISSLELIQLALNRFSGNLPFDIVVNLPNLKALAI 103 (833)
Q Consensus 24 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L 103 (833)
+|+.|++++|+|++ +|..+. ++|++|+|++|+|+ .+| ..+++|++|+|++|+|+ .+|. |.+ +|++|+|
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l~--~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~-~ip~--l~~--~L~~L~L 127 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNLP--PQITVLEITQNALI-SLP---ELPASLEYLDACDNRLS-TLPE--LPA--SLKHLDV 127 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCCC--TTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCS-CCCC--CCT--TCCEEEC
T ss_pred CccEEEeCCCCCCc-cCHhHc--CCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCC-Ccch--hhc--CCCEEEC
Confidence 89999999999966 666553 78999999999999 566 55789999999999998 5887 444 9999999
Q ss_pred cCCcceeeCCccccCCCCCcEEEcccCccccccCcCccCCCcCceEecccccCCCCCCCCcccccccCCCCCCCEEEccC
Q 040925 104 GGNNFFGSIPYSLSNASNLELLDLSVNQFKGNVSIDFSSLKNLLWLNLEQNNLGTGTATDLDFVTFLTNCSSLKALSLAD 183 (833)
Q Consensus 104 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~ 183 (833)
++|.|++ +|. .+++|++|+|++|+|++++. .+++|++|+|++|.|+.++. |. ++|++|+|++
T Consensus 128 s~N~l~~-lp~---~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~N~L~~lp~--------l~--~~L~~L~Ls~ 189 (571)
T 3cvr_A 128 DNNQLTM-LPE---LPALLEYINADNNQLTMLPE----LPTSLEVLSVRNNQLTFLPE--------LP--ESLEALDVST 189 (571)
T ss_dssp CSSCCSC-CCC---CCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSCCCC--------CC--TTCCEEECCS
T ss_pred CCCcCCC-CCC---cCccccEEeCCCCccCcCCC----cCCCcCEEECCCCCCCCcch--------hh--CCCCEEECcC
Confidence 9999986 555 58999999999999998665 57899999999999987553 22 8999999999
Q ss_pred CcCcccCChhHhhhcccccEEEccCccccccCChhhhcCCCCCeEeccCCcccccCCccccCCCCCCEEEcccccCcccC
Q 040925 184 NQFGGELPHSIANLSSTVINFGIGRNQISGTIPPGIRNLVNLIGFGAEENQLHGTIPDAIGELKNLQKLCLFRNFLQGRI 263 (833)
Q Consensus 184 N~l~~~~p~~~~~l~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 263 (833)
|+|+ .+|. +.. .+ +.....|+.|+|++|+|+ .+|..+..+++|+.|+|++|.|++.+
T Consensus 190 N~L~-~lp~-~~~---~L-----------------~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~ 246 (571)
T 3cvr_A 190 NLLE-SLPA-VPV---RN-----------------HHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRI 246 (571)
T ss_dssp SCCS-SCCC-CC----------------------------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHH
T ss_pred CCCC-chhh-HHH---hh-----------------hcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcC
Confidence 9998 5554 221 11 122234588888888888 46666666889999999999998888
Q ss_pred CccccCCC
Q 040925 264 PSGLGNLT 271 (833)
Q Consensus 264 ~~~~~~l~ 271 (833)
|..|..++
T Consensus 247 p~~l~~l~ 254 (571)
T 3cvr_A 247 RESLSQQT 254 (571)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhh
Confidence 87776543
No 355
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.84 E-value=1.1e-20 Score=213.95 Aligned_cols=189 Identities=22% Similarity=0.314 Sum_probs=100.8
Q ss_pred CCcEEECCCcccccccCchhhcCCCCccEEEccCCcceeeCCccccCCCCCcEEEcccCccccccCcCccCCCcCceEec
Q 040925 72 SLELIQLALNRFSGNLPFDIVVNLPNLKALAIGGNNFFGSIPYSLSNASNLELLDLSVNQFKGNVSIDFSSLKNLLWLNL 151 (833)
Q Consensus 72 ~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L 151 (833)
+|+.|+|++|.|+ .+|..++ ++|++|+|++|.|+ .+| ..+++|++|+|++|+|++++. |.+ +|++|+|
T Consensus 60 ~L~~L~Ls~n~L~-~lp~~l~---~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~ip~--l~~--~L~~L~L 127 (571)
T 3cvr_A 60 QFSELQLNRLNLS-SLPDNLP---PQITVLEITQNALI-SLP---ELPASLEYLDACDNRLSTLPE--LPA--SLKHLDV 127 (571)
T ss_dssp TCSEEECCSSCCS-CCCSCCC---TTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSCCCC--CCT--TCCEEEC
T ss_pred CccEEEeCCCCCC-ccCHhHc---CCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCCcch--hhc--CCCEEEC
Confidence 4455555555544 3444332 34555555555554 233 224455555555555554333 332 4555555
Q ss_pred ccccCCCCCCCCcccccccCCCCCCCEEEccCCcCcccCChhHhhhcccccEEEccCccccccCChhhhcCCCCCeEecc
Q 040925 152 EQNNLGTGTATDLDFVTFLTNCSSLKALSLADNQFGGELPHSIANLSSTVINFGIGRNQISGTIPPGIRNLVNLIGFGAE 231 (833)
Q Consensus 152 ~~N~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~ 231 (833)
++|+|+.++. .+++|+.|+|++|+|++ + |. .+++|+.|+|+
T Consensus 128 s~N~l~~lp~----------~l~~L~~L~Ls~N~l~~-l-------------------------p~---~l~~L~~L~Ls 168 (571)
T 3cvr_A 128 DNNQLTMLPE----------LPALLEYINADNNQLTM-L-------------------------PE---LPTSLEVLSVR 168 (571)
T ss_dssp CSSCCSCCCC----------CCTTCCEEECCSSCCSC-C-------------------------CC---CCTTCCEEECC
T ss_pred CCCcCCCCCC----------cCccccEEeCCCCccCc-C-------------------------CC---cCCCcCEEECC
Confidence 5555443221 23455555555555541 1 21 23456666666
Q ss_pred CCcccccCCccccCCCCCCEEEcccccCcccCCccccCCCCC-------CeEEeecccccCCCCCCCCCCCccceeecCC
Q 040925 232 ENQLHGTIPDAIGELKNLQKLCLFRNFLQGRIPSGLGNLTKL-------ANLELSSNSLQGNIPSSLGNCQNLMSFTASQ 304 (833)
Q Consensus 232 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L-------~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~ 304 (833)
+|+|++ +|. |. ++|+.|+|++|.|+ .+|. |.. +| +.|+|++|+|+ .+|..+..+++|+.|+|++
T Consensus 169 ~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~ 239 (571)
T 3cvr_A 169 NNQLTF-LPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILED 239 (571)
T ss_dssp SSCCSC-CCC-CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCS
T ss_pred CCCCCC-cch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeC
Confidence 666664 333 44 66777777777776 3444 443 55 77777777777 4566666677777777777
Q ss_pred ceecccCCcccccccc
Q 040925 305 NKLTGALPHQLLSITT 320 (833)
Q Consensus 305 N~l~~~~p~~~~~~~~ 320 (833)
|++++.+|..+..+..
T Consensus 240 N~l~~~~p~~l~~l~~ 255 (571)
T 3cvr_A 240 NPLSSRIRESLSQQTA 255 (571)
T ss_dssp SSCCHHHHHHHHHHHH
T ss_pred CcCCCcCHHHHHHhhc
Confidence 7777666766655443
No 356
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.84 E-value=1.7e-20 Score=187.44 Aligned_cols=150 Identities=23% Similarity=0.267 Sum_probs=71.2
Q ss_pred EEEcCCCcCcccCCccccCCCCCCEEEccCCcccccCC-ccCCCCCCCCEEEcCCCcccccCCccccCCCCCcEEECCCc
Q 040925 3 TLAVNDNYLTGQLPDFVGNLSDLEVIRIMGNSLGGKIP-TTLGLLRNLVSLNVAENKFSGMFPRSICNISSLELIQLALN 81 (833)
Q Consensus 3 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N 81 (833)
++++++|.++ .+|..+.. .+++|+|++|+|++..| ..|..+++|++|+|++|+|+++.+.+|.++++|++|+|++|
T Consensus 15 ~l~~s~n~l~-~iP~~~~~--~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 91 (220)
T 2v70_A 15 TVDCSNQKLN-KIPEHIPQ--YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91 (220)
T ss_dssp EEECCSSCCS-SCCSCCCT--TCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred EeEeCCCCcc-cCccCCCC--CCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence 4455555555 24443322 33455555555544422 23445555555555555555444444555555555555555
Q ss_pred ccccccCchhhcCCCCccEEEccCCcceeeCCccccCCCCCcEEEcccCccccccCcCccCCCcCceEecccccC
Q 040925 82 RFSGNLPFDIVVNLPNLKALAIGGNNFFGSIPYSLSNASNLELLDLSVNQFKGNVSIDFSSLKNLLWLNLEQNNL 156 (833)
Q Consensus 82 ~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l 156 (833)
+++ .++...|.++++|++|+|++|+|++..|..|.++++|++|+|++|+|+++.+..|..+++|++|+|++|.+
T Consensus 92 ~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 165 (220)
T 2v70_A 92 RLE-NVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPF 165 (220)
T ss_dssp CCC-CCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCE
T ss_pred ccC-ccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCC
Confidence 554 44444444455555555555555444444444445555555555554444444444444444444444433
No 357
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.84 E-value=5.5e-21 Score=218.89 Aligned_cols=64 Identities=30% Similarity=0.429 Sum_probs=37.6
Q ss_pred hhcCCCCCeEeccCCcccccCCccccCCCCCCEEEcccccCcccCCccccCCCCCCeEEeecccccCC
Q 040925 219 IRNLVNLIGFGAEENQLHGTIPDAIGELKNLQKLCLFRNFLQGRIPSGLGNLTKLANLELSSNSLQGN 286 (833)
Q Consensus 219 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 286 (833)
|..+++|+.|+|++|++.+..| |..+++|+.|+|++|.|++. ..|..+++|+.|+|++|++.+.
T Consensus 149 l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 149 LSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp GGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEECC
T ss_pred hcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcCC
Confidence 4455555555555555554444 55666666666666666643 3456666666666666666543
No 358
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.84 E-value=1.6e-20 Score=196.30 Aligned_cols=64 Identities=30% Similarity=0.404 Sum_probs=40.0
Q ss_pred hhhcCCCCCeEeccCCcccccCCccccCCCCCCEEEcccccCcccCCccccCCCCCCeEEeecccccC
Q 040925 218 GIRNLVNLIGFGAEENQLHGTIPDAIGELKNLQKLCLFRNFLQGRIPSGLGNLTKLANLELSSNSLQG 285 (833)
Q Consensus 218 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 285 (833)
.+..+++|+.|++++|++++..+ +..+++|++|+|++|.|++. + .+..+++|+.|++++|++..
T Consensus 151 ~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~l-~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 151 VLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp GGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEEEEEEEEEC
T ss_pred hhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCCC-h-hhccCCCCCEEECcCCcccC
Confidence 34555566666666666665443 66666777777777776643 2 36666777777777776664
No 359
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.83 E-value=5.7e-21 Score=190.82 Aligned_cols=158 Identities=20% Similarity=0.144 Sum_probs=122.9
Q ss_pred CEEEcccccCcccCCccccCCCCCCeEEeecccccCCCC-CCCCCCCccceeecCCceecccCCcccccccccceeeecC
Q 040925 250 QKLCLFRNFLQGRIPSGLGNLTKLANLELSSNSLQGNIP-SSLGNCQNLMSFTASQNKLTGALPHQLLSITTLSLYLDLS 328 (833)
Q Consensus 250 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~ll~~L~ls 328 (833)
+.+++++|.++. +|..+. ..+++|+|++|+|++..+ ..|..+++|+.|++++|++
T Consensus 14 ~~l~~s~n~l~~-iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i--------------------- 69 (220)
T 2v70_A 14 TTVDCSNQKLNK-IPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKI--------------------- 69 (220)
T ss_dssp TEEECCSSCCSS-CCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCC---------------------
T ss_pred CEeEeCCCCccc-CccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcC---------------------
Confidence 467777777763 455443 345677777777765533 3455666665555555544
Q ss_pred CCccCCCCCcccccCCCcCEEeccCCcCCCCCCccccCCCCCcEEeecCCccccccCccccCCCCCCeEEccCcccCCCc
Q 040925 329 NNLLNGSLPLQVGHLKNLVILDISSNQFSGVIPGTLSTCVCLEYLDISSNSFHGVIPLSLSFLKSIKELNVSSNNLSGQI 408 (833)
Q Consensus 329 ~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~ 408 (833)
+++.+..|.++++|++|+|++|+++++.+..|.++++|++|+|++|+|+++.|..|..+++|+.|+|++|+|++..
T Consensus 70 ----~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 145 (220)
T 2v70_A 70 ----TDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVA 145 (220)
T ss_dssp ----CEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBC
T ss_pred ----CEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEEC
Confidence 4455667888899999999999998888888999999999999999999888888999999999999999999888
Q ss_pred hhhhcCCCCCceEECccCcCccccCCC
Q 040925 409 PEFLKNLSVLEFLSLSYNHFEGEVPTK 435 (833)
Q Consensus 409 p~~l~~l~~L~~L~l~~N~l~~~~~~~ 435 (833)
|..|..+++|+.|++++|+|+|.++..
T Consensus 146 ~~~~~~l~~L~~L~L~~N~l~c~c~l~ 172 (220)
T 2v70_A 146 PGAFDTLHSLSTLNLLANPFNCNCYLA 172 (220)
T ss_dssp TTTTTTCTTCCEEECCSCCEECSGGGH
T ss_pred HHHhcCCCCCCEEEecCcCCcCCCchH
Confidence 899999999999999999999888743
No 360
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.83 E-value=5.9e-21 Score=190.72 Aligned_cols=157 Identities=17% Similarity=0.208 Sum_probs=125.6
Q ss_pred CEEEcccccCcccCCccccCCCCCCeEEeecccccCCCCCCCCCCCccceeecCCceecccCCcccccccccceeeecCC
Q 040925 250 QKLCLFRNFLQGRIPSGLGNLTKLANLELSSNSLQGNIPSSLGNCQNLMSFTASQNKLTGALPHQLLSITTLSLYLDLSN 329 (833)
Q Consensus 250 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~ll~~L~ls~ 329 (833)
+.+++++|.++ .+|..+. ++|+.|+|++|+|++..+..|..+++|+.|+|++|+++
T Consensus 14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~--------------------- 69 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS--------------------- 69 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCC---------------------
T ss_pred CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCC---------------------
Confidence 57888888887 4565554 67888888888888777777777777776666666655
Q ss_pred CccCCCCCcccccCCCcCEEeccCCcCCCCCCccccCCCCCcEEeecCCccccccCccccCCCCCCeEEccCcccCCCch
Q 040925 330 NLLNGSLPLQVGHLKNLVILDISSNQFSGVIPGTLSTCVCLEYLDISSNSFHGVIPLSLSFLKSIKELNVSSNNLSGQIP 409 (833)
Q Consensus 330 N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p 409 (833)
+..|..|.++++|++|+|++|+|+.+++..|.++++|++|+|++|+|+++.+..|..+++|+.|+|++|+|++..+
T Consensus 70 ----~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 145 (220)
T 2v9t_B 70 ----ELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAK 145 (220)
T ss_dssp ----EECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred ----CcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECH
Confidence 3456677788888888888888887777778888888888888888888888888888888888888888888877
Q ss_pred hhhcCCCCCceEECccCcCccccCC
Q 040925 410 EFLKNLSVLEFLSLSYNHFEGEVPT 434 (833)
Q Consensus 410 ~~l~~l~~L~~L~l~~N~l~~~~~~ 434 (833)
..|..+++|+.|+|++|+|.|.+..
T Consensus 146 ~~~~~l~~L~~L~L~~N~~~c~c~l 170 (220)
T 2v9t_B 146 GTFSPLRAIQTMHLAQNPFICDCHL 170 (220)
T ss_dssp TTTTTCTTCCEEECCSSCEECSGGG
T ss_pred HHHhCCCCCCEEEeCCCCcCCCCcc
Confidence 7888888899999999998887764
No 361
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.83 E-value=1e-20 Score=204.57 Aligned_cols=181 Identities=23% Similarity=0.149 Sum_probs=139.7
Q ss_pred CeEeccCCcccccCCccccCCCCCCEEEcccccCcccCCcccc-CCCCCCeEEeecccccCCCCCCCCCCCccceeecCC
Q 040925 226 IGFGAEENQLHGTIPDAIGELKNLQKLCLFRNFLQGRIPSGLG-NLTKLANLELSSNSLQGNIPSSLGNCQNLMSFTASQ 304 (833)
Q Consensus 226 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~ 304 (833)
+.+++++|+++. +|..+. ..++.|+|++|.|+++.+..|. ++++|++|+|++|+|++..+..|.++++|+.|+|++
T Consensus 21 ~~l~c~~~~l~~-iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLPN-VPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCSS-CCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcCc-cCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 567888888774 444433 3577888888888877777776 778888888888888776667777777777666666
Q ss_pred ceecccCCcccccccccceeeecCCCccCCCCCcccccCCCcCEEeccCCcCCCCCCccccCCCCCcEEeecCCcccccc
Q 040925 305 NKLTGALPHQLLSITTLSLYLDLSNNLLNGSLPLQVGHLKNLVILDISSNQFSGVIPGTLSTCVCLEYLDISSNSFHGVI 384 (833)
Q Consensus 305 N~l~~~~p~~~~~~~~ll~~L~ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 384 (833)
|+|+ ...+..|.++++|++|+|++|+|+++.|..|.++++|+.|+|++|+|+++.
T Consensus 98 N~l~-------------------------~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~ 152 (361)
T 2xot_A 98 NHLH-------------------------TLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFP 152 (361)
T ss_dssp SCCC-------------------------EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCC
T ss_pred CcCC-------------------------cCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeC
Confidence 6655 344556778888999999999998888888999999999999999998766
Q ss_pred Cccc---cCCCCCCeEEccCcccCCCchhhhcCCCCC--ceEECccCcCccccCC
Q 040925 385 PLSL---SFLKSIKELNVSSNNLSGQIPEFLKNLSVL--EFLSLSYNHFEGEVPT 434 (833)
Q Consensus 385 ~~~~---~~l~~L~~L~l~~N~l~~~~p~~l~~l~~L--~~L~l~~N~l~~~~~~ 434 (833)
+..| ..+++|+.|+|++|+|++..+..+..++.+ +.|+|++|+|.|.|..
T Consensus 153 ~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C~C~l 207 (361)
T 2xot_A 153 VELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLECDCKL 207 (361)
T ss_dssp GGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEECCHHH
T ss_pred HHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCccCCcCc
Confidence 6666 568899999999999998877888888874 8899999999987753
No 362
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.83 E-value=4.9e-20 Score=185.40 Aligned_cols=155 Identities=20% Similarity=0.236 Sum_probs=94.3
Q ss_pred CCEEEccCCcccccCCccCCCCCCCCEEEcCCCcccccCCccccCCCCCcEEECCCcccccccCchhhcCCCCccEEEcc
Q 040925 25 LEVIRIMGNSLGGKIPTTLGLLRNLVSLNVAENKFSGMFPRSICNISSLELIQLALNRFSGNLPFDIVVNLPNLKALAIG 104 (833)
Q Consensus 25 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~ 104 (833)
-+.++.+++.+ +.+|..+. ++|++|+|++|+|+++.|..|.++++|+.|+|++|+|+ .+|..+|.++++|++|+|+
T Consensus 21 ~~~v~c~~~~l-~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~-~i~~~~~~~l~~L~~L~Ls 96 (229)
T 3e6j_A 21 GTTVDCRSKRH-ASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQLTVLDLG 96 (229)
T ss_dssp TTEEECTTSCC-SSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECC
T ss_pred CCEeEccCCCc-CccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCC-CcChhhcccCCCcCEEECC
Confidence 44566666666 34444333 56666666666666655666666666666666666665 5666666666666666666
Q ss_pred CCcceeeCCccccCCCCCcEEEcccCccccccCcCccCCCcCceEecccccCCCCCCCCcccccccCCCCCCCEEEccCC
Q 040925 105 GNNFFGSIPYSLSNASNLELLDLSVNQFKGNVSIDFSSLKNLLWLNLEQNNLGTGTATDLDFVTFLTNCSSLKALSLADN 184 (833)
Q Consensus 105 ~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~N 184 (833)
+|+|+++.+..|..+++|++|+|++|+|+.+ +..+..+++|++|+|++|+|+.++. ..|..+++|+.|+|++|
T Consensus 97 ~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~l-p~~~~~l~~L~~L~L~~N~l~~~~~------~~~~~l~~L~~L~l~~N 169 (229)
T 3e6j_A 97 TNQLTVLPSAVFDRLVHLKELFMCCNKLTEL-PRGIERLTHLTHLALDQNQLKSIPH------GAFDRLSSLTHAYLFGN 169 (229)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCCSC-CTTGGGCTTCSEEECCSSCCCCCCT------TTTTTCTTCCEEECTTS
T ss_pred CCcCCccChhHhCcchhhCeEeccCCccccc-CcccccCCCCCEEECCCCcCCccCH------HHHhCCCCCCEEEeeCC
Confidence 6666655555566666666666666666643 3445666666666666666665543 22556666777777777
Q ss_pred cCcccC
Q 040925 185 QFGGEL 190 (833)
Q Consensus 185 ~l~~~~ 190 (833)
.+.+..
T Consensus 170 ~~~c~c 175 (229)
T 3e6j_A 170 PWDCEC 175 (229)
T ss_dssp CBCTTB
T ss_pred CccCCc
Confidence 766443
No 363
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.83 E-value=9.5e-21 Score=202.26 Aligned_cols=266 Identities=14% Similarity=0.126 Sum_probs=143.9
Q ss_pred CCCCCEEEccCCcccccCCccCCC-CCCCCEEEcCCCccc--ccCCccccCCCCCcEEECCCcccccccCchhhcC----
Q 040925 22 LSDLEVIRIMGNSLGGKIPTTLGL-LRNLVSLNVAENKFS--GMFPRSICNISSLELIQLALNRFSGNLPFDIVVN---- 94 (833)
Q Consensus 22 l~~L~~L~l~~n~l~~~~~~~~~~-l~~L~~L~L~~n~i~--~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~---- 94 (833)
+.+++.|.++++ +....-..+.. +++|++|||++|+|. ...+..+. .+..+.+..| .+|..+|.+
T Consensus 24 ~~~l~~L~l~g~-i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~~~~---~~~~~~~~~~----~I~~~aF~~~~~~ 95 (329)
T 3sb4_A 24 ANSITHLTLTGK-LNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAGTYP---NGKFYIYMAN----FVPAYAFSNVVNG 95 (329)
T ss_dssp HHHCSEEEEEEE-ECHHHHHHHHHSCTTCCEEEEEEEEECCEEESSSSSG---GGCCEEECTT----EECTTTTEEEETT
T ss_pred hCceeEEEEecc-ccHHHHHHHHHhhccCeEEecCcceeEEecCcccccc---cccccccccc----ccCHHHhcccccc
Confidence 567888888865 22222222333 778888888888887 33333332 2455555555 456777888
Q ss_pred ----CCCccEEEccCCcceeeCCccccCCCCCcEEEcccCccccccCcCccCCCcCceEeccccc----CCCCCCCCccc
Q 040925 95 ----LPNLKALAIGGNNFFGSIPYSLSNASNLELLDLSVNQFKGNVSIDFSSLKNLLWLNLEQNN----LGTGTATDLDF 166 (833)
Q Consensus 95 ----l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~----l~~~~~~~~~~ 166 (833)
+++|+.|+|.+ .++.+.+.+|.++++|+.|+|++|.+..+.+.+|.+..++..+.+..+. ...+...
T Consensus 96 ~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~---- 170 (329)
T 3sb4_A 96 VTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHF---- 170 (329)
T ss_dssp EEEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTS----
T ss_pred cccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccc----
Confidence 88888888888 7777777788888888888888888888888888887777777665522 1222211
Q ss_pred ccccCCCCCCC-EEEccCCcCcccCChhHhhh---cccccEEEccCccccccCChhh-hcCCCCCeEeccCCcccccCCc
Q 040925 167 VTFLTNCSSLK-ALSLADNQFGGELPHSIANL---SSTVINFGIGRNQISGTIPPGI-RNLVNLIGFGAEENQLHGTIPD 241 (833)
Q Consensus 167 ~~~l~~l~~L~-~L~Ls~N~l~~~~p~~~~~l---~~~l~~L~l~~n~i~~~~~~~~-~~l~~L~~L~L~~N~l~~~~~~ 241 (833)
.|.++.+|+ .+.+.... .++..+... ...+..+.+.++-.. .....+ ..+++|+.|+|++|+++.+.+.
T Consensus 171 --~f~~~~~L~~~i~~~~~~---~l~~~~~~~~~~~~~~~~l~~~~~l~~-~~~~~l~~~~~~L~~l~L~~n~i~~I~~~ 244 (329)
T 3sb4_A 171 --AFIEGEPLETTIQVGAMG---KLEDEIMKAGLQPRDINFLTIEGKLDN-ADFKLIRDYMPNLVSLDISKTNATTIPDF 244 (329)
T ss_dssp --CEEESCCCEEEEEECTTC---CHHHHHHHTTCCGGGCSEEEEEECCCH-HHHHHHHHHCTTCCEEECTTBCCCEECTT
T ss_pred --ccccccccceeEEecCCC---cHHHHHhhcccCccccceEEEeeeecH-HHHHHHHHhcCCCeEEECCCCCcceecHh
Confidence 133444555 33333221 222222211 112222333222111 111111 1244555555555555544445
Q ss_pred cccCCCCCCEEEcccccCcccCCccccCCCCCC-eEEeecccccCCCCCCCCCCCccceeecCCceec
Q 040925 242 AIGELKNLQKLCLFRNFLQGRIPSGLGNLTKLA-NLELSSNSLQGNIPSSLGNCQNLMSFTASQNKLT 308 (833)
Q Consensus 242 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 308 (833)
+|.++.+|++|+|.+| ++.+.+.+|.++++|+ .+++.+ .++.+.+.+|.++++|+.+++++|.++
T Consensus 245 aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~ 310 (329)
T 3sb4_A 245 TFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKIT 310 (329)
T ss_dssp TTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCC
T ss_pred hhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccC
Confidence 5555555555555554 4444444555555555 555554 444444455555555555555555554
No 364
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.82 E-value=7.1e-20 Score=191.41 Aligned_cols=173 Identities=23% Similarity=0.291 Sum_probs=119.9
Q ss_pred ccCCCCCCEEEccCCcccccCCccCCCCCCCCEEEcCCCcccccCCccccCCCCCcEEECCCcccccccCchhhcCCCCc
Q 040925 19 VGNLSDLEVIRIMGNSLGGKIPTTLGLLRNLVSLNVAENKFSGMFPRSICNISSLELIQLALNRFSGNLPFDIVVNLPNL 98 (833)
Q Consensus 19 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L 98 (833)
+..+++|+.|++++|.+... + .+..+++|++|+|++|++++..+ +.++++|+.|+|++|+++ .+|. +..+++|
T Consensus 42 ~~~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~-~~~~--l~~l~~L 114 (291)
T 1h6t_A 42 QNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVK-DLSS--LKDLKKL 114 (291)
T ss_dssp HHHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-CGGG--GTTCTTC
T ss_pred hhhcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCC-CChh--hccCCCC
Confidence 44567777777777777443 3 37777777777777777775444 777777777777777776 4443 6677777
Q ss_pred cEEEccCCcceeeCCccccCCCCCcEEEcccCccccccCcCccCCCcCceEecccccCCCCCCCCcccccccCCCCCCCE
Q 040925 99 KALAIGGNNFFGSIPYSLSNASNLELLDLSVNQFKGNVSIDFSSLKNLLWLNLEQNNLGTGTATDLDFVTFLTNCSSLKA 178 (833)
Q Consensus 99 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~l~~L~~ 178 (833)
++|+|++|++++. ..+..+++|++|+|++|+|+++ ..|..+++|++|+|++|.++.++. +..+++|++
T Consensus 115 ~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--------l~~l~~L~~ 182 (291)
T 1h6t_A 115 KSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--------LAGLTKLQN 182 (291)
T ss_dssp CEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--------GTTCTTCCE
T ss_pred CEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--------hcCCCccCE
Confidence 7777777777643 4577777777777777777765 467777777777777777765432 567777777
Q ss_pred EEccCCcCcccCChhHhhhcccccEEEccCccccc
Q 040925 179 LSLADNQFGGELPHSIANLSSTVINFGIGRNQISG 213 (833)
Q Consensus 179 L~Ls~N~l~~~~p~~~~~l~~~l~~L~l~~n~i~~ 213 (833)
|+|++|++++ +|. +..+. .++.|++++|.++.
T Consensus 183 L~L~~N~i~~-l~~-l~~l~-~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 183 LYLSKNHISD-LRA-LAGLK-NLDVLELFSQECLN 214 (291)
T ss_dssp EECCSSCCCB-CGG-GTTCT-TCSEEEEEEEEEEC
T ss_pred EECCCCcCCC-Chh-hccCC-CCCEEECcCCcccC
Confidence 7777777773 443 44443 46777777777764
No 365
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.81 E-value=1.2e-19 Score=207.81 Aligned_cols=189 Identities=23% Similarity=0.297 Sum_probs=142.1
Q ss_pred CcEEECCCcccccccCchhhcCCCCccEEEccCCcceeeCCccccCCCCCcEEEcccCccccccCcCccCCCcCceEecc
Q 040925 73 LELIQLALNRFSGNLPFDIVVNLPNLKALAIGGNNFFGSIPYSLSNASNLELLDLSVNQFKGNVSIDFSSLKNLLWLNLE 152 (833)
Q Consensus 73 L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~ 152 (833)
+..+.++.+.+.+.++ +..+++|+.|+|++|.|.. ++ .|..+++|++|+|++|+|+++++ |..+++|+.|+|+
T Consensus 23 l~~l~l~~~~i~~~~~---~~~L~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls 95 (605)
T 1m9s_A 23 TIKDNLKKKSVTDAVT---QNELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLD 95 (605)
T ss_dssp HHHHHTTCSCTTSEEC---HHHHTTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECC
T ss_pred HHHHhccCCCcccccc---hhcCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECc
Confidence 3444555555542222 3456667777777777653 23 46777777777777777776655 7777777777777
Q ss_pred cccCCCCCCCCcccccccCCCCCCCEEEccCCcCcccCChhHhhhcccccEEEccCccccccCChhhhcCCCCCeEeccC
Q 040925 153 QNNLGTGTATDLDFVTFLTNCSSLKALSLADNQFGGELPHSIANLSSTVINFGIGRNQISGTIPPGIRNLVNLIGFGAEE 232 (833)
Q Consensus 153 ~N~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~ 232 (833)
+|.|+.++ .+..+++|+.|+|++|++.+ .+.+..+++|+.|+|++
T Consensus 96 ~N~l~~l~--------~l~~l~~L~~L~Ls~N~l~~---------------------------l~~l~~l~~L~~L~Ls~ 140 (605)
T 1m9s_A 96 ENKIKDLS--------SLKDLKKLKSLSLEHNGISD---------------------------INGLVHLPQLESLYLGN 140 (605)
T ss_dssp SSCCCCCT--------TSTTCTTCCEEECTTSCCCC---------------------------CGGGGGCTTCSEEECCS
T ss_pred CCCCCCCh--------hhccCCCCCEEEecCCCCCC---------------------------CccccCCCccCEEECCC
Confidence 77776533 26677888888888888762 12467788899999999
Q ss_pred CcccccCCccccCCCCCCEEEcccccCcccCCccccCCCCCCeEEeecccccCCCCCCCCCCCccceeecCCceecc
Q 040925 233 NQLHGTIPDAIGELKNLQKLCLFRNFLQGRIPSGLGNLTKLANLELSSNSLQGNIPSSLGNCQNLMSFTASQNKLTG 309 (833)
Q Consensus 233 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~ 309 (833)
|++.++ ..|..+++|+.|+|++|.|++..| +..+++|+.|+|++|+|++. ..+..+++|+.|+|++|++.+
T Consensus 141 N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 141 NKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLN 211 (605)
T ss_dssp SCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEEC
T ss_pred CccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcC
Confidence 999865 678999999999999999997655 89999999999999999864 368999999999999999983
No 366
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.81 E-value=1.7e-18 Score=188.55 Aligned_cols=259 Identities=10% Similarity=0.097 Sum_probs=150.4
Q ss_pred CcccCCccccCCCCCCEEEccCCcccccCCccCCCCCCCCEEEcCCCcccccCCccccCCCCCcEEECCCcccccccCch
Q 040925 11 LTGQLPDFVGNLSDLEVIRIMGNSLGGKIPTTLGLLRNLVSLNVAENKFSGMFPRSICNISSLELIQLALNRFSGNLPFD 90 (833)
Q Consensus 11 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 90 (833)
++.+...+|.++ +|+.+.+.++ ++.+...+|... +|+.+.|.+ .++.+.+.+|.++++|+.++|+.|+++ .++..
T Consensus 124 i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~-~I~~~ 198 (401)
T 4fdw_A 124 VKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKIT-KLPAS 198 (401)
T ss_dssp CCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCS-EECTT
T ss_pred cCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcce-Eechh
Confidence 333444455553 4555555544 545555555552 455555554 444455555555555555555555555 55555
Q ss_pred hhcCCCCccEEEccCCcceeeCCccccCCCCCcEEEcccCccccccCcCccCCCcCceEecccccCCCCCCCCccccccc
Q 040925 91 IVVNLPNLKALAIGGNNFFGSIPYSLSNASNLELLDLSVNQFKGNVSIDFSSLKNLLWLNLEQNNLGTGTATDLDFVTFL 170 (833)
Q Consensus 91 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l 170 (833)
+|. ..+|+.+.|..+ ++.+...+|.++++|+.++|..| ++.+...+|.+ .+|+.+.| .|.++.++.. .|
T Consensus 199 aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~l-p~~i~~I~~~------aF 267 (401)
T 4fdw_A 199 TFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKL-PNGVTNIASR------AF 267 (401)
T ss_dssp TTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEE-ETTCCEECTT------TT
T ss_pred hEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEe-CCCccEEChh------Hh
Confidence 554 355555555533 44455555555555555555543 44455555555 55555555 3334444332 24
Q ss_pred CCCCCCCEEEccCCcCcccCChhHhhhcccccEEEccCccccccCChhhhcCCCCCeEeccCCcccccCCccccCCCCCC
Q 040925 171 TNCSSLKALSLADNQFGGELPHSIANLSSTVINFGIGRNQISGTIPPGIRNLVNLIGFGAEENQLHGTIPDAIGELKNLQ 250 (833)
Q Consensus 171 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 250 (833)
.++++|+.+++.+|.+. .+.+..+.+.+|.++++|+.+.|. +.+..+...+|.++.+|+
T Consensus 268 ~~c~~L~~l~l~~~~~~--------------------~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~ 326 (401)
T 4fdw_A 268 YYCPELAEVTTYGSTFN--------------------DDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVT 326 (401)
T ss_dssp TTCTTCCEEEEESSCCC--------------------CCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCC
T ss_pred hCCCCCCEEEeCCcccc--------------------CCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCcc
Confidence 45555555555555443 111123556677777778887777 446667777777777788
Q ss_pred EEEcccccCcccCCccccCCCCCCeEEeecccccCCCCCCCCCCC-ccceeecCCceec
Q 040925 251 KLCLFRNFLQGRIPSGLGNLTKLANLELSSNSLQGNIPSSLGNCQ-NLMSFTASQNKLT 308 (833)
Q Consensus 251 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~-~L~~L~l~~N~l~ 308 (833)
.++|..| ++.+.+.+|.++ +|+.+++++|.+....+..|.+++ +++.|++..+.+.
T Consensus 327 ~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~~ 383 (401)
T 4fdw_A 327 QLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESVE 383 (401)
T ss_dssp EEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGHH
T ss_pred EEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHHH
Confidence 8877554 665667777777 788888877777766667777774 6667776666544
No 367
>1zth_A RIO1 serine protein kinase; ribosome biogenesis, rRNA, ADP, manganese, transferase; HET: ADP; 1.89A {Archaeoglobus fulgidus} PDB: 1zp9_A* 1ztf_A*
Probab=99.81 E-value=5.4e-20 Score=188.57 Aligned_cols=137 Identities=19% Similarity=0.169 Sum_probs=107.2
Q ss_pred CccCceeccCcceEEEEEEECCCceE--EEEEEeeccCCcc------------------------hhHHHHHHHHHhhcC
Q 040925 533 FSSSNMIGQGSFGYVYKGTLGEDEMI--VAVKVINLKYKGA------------------------SRSFVAECEALRNIR 586 (833)
Q Consensus 533 y~~~~~lg~G~~g~Vy~~~~~~~~~~--vavK~~~~~~~~~------------------------~~~~~~E~~~l~~l~ 586 (833)
|++.+.||+|+||.||+|.+..+|+. ||||+++...... ...+.+|+++++++.
T Consensus 49 ~~i~~~ig~G~~g~Vy~a~~~~~g~~~~vAvK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~ 128 (258)
T 1zth_A 49 TAMGGVISTGKEANVFYADGVFDGKPVAMAVKIYRIETSEFDKMDEYLYGDERFDMRRISPKEKVFIWTEKEFRNLERAK 128 (258)
T ss_dssp EEEEEEEEECSSEEEEEEEEEETTEEEEEEEEEECCC-------GGGTTTCTTSCC----CHHHHHHHHHHHHHHHHHHH
T ss_pred hhhCCEEeecceEEEEEEEEcCCCcEeeEEEEEEECCccchhhHHHhhcccchhhhhccChHHHHHHHHHHHHHHHHHHH
Confidence 67889999999999999999667888 9999975431110 125789999999998
Q ss_pred CCcc--ceEeeEeecCCCCCCceEeEEEEecCC-C----ChhhhhccCCCccccccCCHHHHHHHHHHHHHHHHHHh-hc
Q 040925 587 HRNL--IKIITICSSTDFKGTDFKAFVFEYMEN-G----SLKDWLHQSDDQVEVCKLSLIQRVNIAIDVASAMEYLH-HH 658 (833)
Q Consensus 587 h~ni--v~~~~~~~~~~~~~~~~~~lv~e~~~~-g----sL~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~gL~~LH-~~ 658 (833)
|+++ +.++++ ...++||||+.+ | +|.++... .++..+..++.|++.||.||| +.
T Consensus 129 ~~~i~~p~~~~~---------~~~~lVmE~~g~~g~~~~~L~~~~~~---------~~~~~~~~i~~qi~~~l~~lH~~~ 190 (258)
T 1zth_A 129 EAGVSVPQPYTY---------MKNVLLMEFIGEDELPAPTLVELGRE---------LKELDVEGIFNDVVENVKRLYQEA 190 (258)
T ss_dssp HTTCCCCCEEEE---------ETTEEEEECCEETTEECCBHHHHGGG---------GGGSCHHHHHHHHHHHHHHHHHTS
T ss_pred hCCCCCCeEEEc---------CCCEEEEEecCCCCCccccHHHHhhc---------cChHHHHHHHHHHHHHHHHHHHHC
Confidence 8764 444432 145899999942 4 66665432 234567789999999999999 88
Q ss_pred CCCCceeeCCCCCCeeecCCCcEEEccccccccc
Q 040925 659 CQPPMVHGDLKPSNVLLDHDMVAHVCDFGLAKFL 692 (833)
Q Consensus 659 ~~~~ivH~Dlkp~NIll~~~~~~kL~DfG~a~~~ 692 (833)
||+||||||+|||++. .++|+|||+|...
T Consensus 191 ---givHrDlkp~NILl~~--~~~liDFG~a~~~ 219 (258)
T 1zth_A 191 ---ELVHADLSEYNIMYID--KVYFIDMGQAVTL 219 (258)
T ss_dssp ---CEECSSCSTTSEEESS--SEEECCCTTCEET
T ss_pred ---CEEeCCCCHHHEEEcC--cEEEEECcccccC
Confidence 9999999999999988 9999999999754
No 368
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.80 E-value=5.4e-19 Score=177.72 Aligned_cols=152 Identities=20% Similarity=0.276 Sum_probs=142.2
Q ss_pred cEEEcCCCcCcccCCccccCCCCCCEEEccCCcccccCCccCCCCCCCCEEEcCCCcccccCCccccCCCCCcEEECCCc
Q 040925 2 QTLAVNDNYLTGQLPDFVGNLSDLEVIRIMGNSLGGKIPTTLGLLRNLVSLNVAENKFSGMFPRSICNISSLELIQLALN 81 (833)
Q Consensus 2 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N 81 (833)
+++++++++++ .+|..+. ++|++|+|++|+|++..|..|..+++|++|+|++|+|+.+.+..|.++++|+.|+|++|
T Consensus 22 ~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N 98 (229)
T 3e6j_A 22 TTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN 98 (229)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCC
Confidence 57899999999 6777665 79999999999999998999999999999999999999877888999999999999999
Q ss_pred ccccccCchhhcCCCCccEEEccCCcceeeCCccccCCCCCcEEEcccCccccccCcCccCCCcCceEecccccCCC
Q 040925 82 RFSGNLPFDIVVNLPNLKALAIGGNNFFGSIPYSLSNASNLELLDLSVNQFKGNVSIDFSSLKNLLWLNLEQNNLGT 158 (833)
Q Consensus 82 ~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~ 158 (833)
+|+ .+|..+|..+++|++|+|++|+|+ .+|..+..+++|++|+|++|+|+.+++..|..+++|+.|+|++|.+..
T Consensus 99 ~l~-~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 173 (229)
T 3e6j_A 99 QLT-VLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDC 173 (229)
T ss_dssp CCC-CCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCT
T ss_pred cCC-ccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccC
Confidence 998 889899999999999999999998 678899999999999999999999999999999999999999999865
No 369
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.79 E-value=2.6e-20 Score=191.53 Aligned_cols=61 Identities=26% Similarity=0.315 Sum_probs=28.8
Q ss_pred hcCCCCCeEeccCCcccccCCccccCCCCCCEEEcccccCcccCCccccCCCCCCeEEeeccccc
Q 040925 220 RNLVNLIGFGAEENQLHGTIPDAIGELKNLQKLCLFRNFLQGRIPSGLGNLTKLANLELSSNSLQ 284 (833)
Q Consensus 220 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 284 (833)
..+++|+.|++++|+++++ + .+..+++|++|+|++|.|++. ..+..+++|+.|++++|++.
T Consensus 125 ~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~ 185 (263)
T 1xeu_A 125 IHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCV 185 (263)
T ss_dssp TTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEE
T ss_pred cCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCccc
Confidence 3344444444444444432 1 344445555555555555433 34445555555555555554
No 370
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.79 E-value=6.1e-20 Score=188.74 Aligned_cols=101 Identities=24% Similarity=0.258 Sum_probs=43.5
Q ss_pred CCCCEEEcCCCcccccCCccccCCCCCcEEECCCcccccccCchhhcCCCCccEEEccCCcceeeCCccccCCCCCcEEE
Q 040925 47 RNLVSLNVAENKFSGMFPRSICNISSLELIQLALNRFSGNLPFDIVVNLPNLKALAIGGNNFFGSIPYSLSNASNLELLD 126 (833)
Q Consensus 47 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 126 (833)
.+++.+++++|.++++. .+..+++|+.|++++|.++ .+| .+..+++|++|+|++|+|++..+ |.++++|++|+
T Consensus 19 ~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~-~l~--~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~ 91 (263)
T 1xeu_A 19 ANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQ-SLA--GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELS 91 (263)
T ss_dssp HHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCC-CCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEE
T ss_pred HHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcc-cch--HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEE
Confidence 33444444444444221 3444444444444444444 333 23344444444444444443222 44444444444
Q ss_pred cccCccccccCcCccCCCcCceEecccccCC
Q 040925 127 LSVNQFKGNVSIDFSSLKNLLWLNLEQNNLG 157 (833)
Q Consensus 127 L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~ 157 (833)
|++|+|++++.... ++|++|+|++|+++
T Consensus 92 L~~N~l~~l~~~~~---~~L~~L~L~~N~l~ 119 (263)
T 1xeu_A 92 VNRNRLKNLNGIPS---ACLSRLFLDNNELR 119 (263)
T ss_dssp CCSSCCSCCTTCCC---SSCCEEECCSSCCS
T ss_pred CCCCccCCcCcccc---CcccEEEccCCccC
Confidence 44444443332111 44444444444443
No 371
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.78 E-value=5.4e-22 Score=225.98 Aligned_cols=203 Identities=19% Similarity=0.164 Sum_probs=125.0
Q ss_pred CCCCCCCEEEcCCCcccccCCccccCCCCCcEEECCCcc-------------cccccCchhhcCCCCccEEE-ccCCcce
Q 040925 44 GLLRNLVSLNVAENKFSGMFPRSICNISSLELIQLALNR-------------FSGNLPFDIVVNLPNLKALA-IGGNNFF 109 (833)
Q Consensus 44 ~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~-------------l~~~~~~~~~~~l~~L~~L~-L~~N~l~ 109 (833)
..+++|+.|+|++|+++ .+|..++++++|+.|++++|. +. ..++..+..+++|+.|+ ++.|.+.
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~-~~~~~~l~~l~~L~~L~~l~~n~~~ 423 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPL-LYEKETLQYFSTLKAVDPMRAAYLD 423 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTG-GGHHHHHHHHHHHHHHCGGGHHHHH
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccc-cCCHHHHHHHHhcccCcchhhcccc
Confidence 45677777788888776 667777777788877776664 33 23344556677777776 5555432
Q ss_pred eeCCccccCCCCCcEEEcccCccccccCcCccCCCcCceEecccccCCCCCCCCcccccccCCCCCCCEEEccCCcCccc
Q 040925 110 GSIPYSLSNASNLELLDLSVNQFKGNVSIDFSSLKNLLWLNLEQNNLGTGTATDLDFVTFLTNCSSLKALSLADNQFGGE 189 (833)
Q Consensus 110 ~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~~~ 189 (833)
+|+.+.+++|.|+.+++. .|+.|+|++|.|+.++ . +.++++|+.|+|++|+|+ .
T Consensus 424 -----------~L~~l~l~~n~i~~l~~~------~L~~L~Ls~n~l~~lp-------~-~~~l~~L~~L~Ls~N~l~-~ 477 (567)
T 1dce_A 424 -----------DLRSKFLLENSVLKMEYA------DVRVLHLAHKDLTVLC-------H-LEQLLLVTHLDLSHNRLR-A 477 (567)
T ss_dssp -----------HHHHHHHHHHHHHHHHHT------TCSEEECTTSCCSSCC-------C-GGGGTTCCEEECCSSCCC-C
T ss_pred -----------hhhhhhhhcccccccCcc------CceEEEecCCCCCCCc-------C-ccccccCcEeecCccccc-c
Confidence 344455566666554432 3677777777776543 1 556677777777777776 2
Q ss_pred CChhHhhhcccccEEEccCccccccCChhhhcCCCCCeEeccCCcccccCCccccCCCCCCEEEcccccCcccC-Ccccc
Q 040925 190 LPHSIANLSSTVINFGIGRNQISGTIPPGIRNLVNLIGFGAEENQLHGTIPDAIGELKNLQKLCLFRNFLQGRI-PSGLG 268 (833)
Q Consensus 190 ~p~~~~~l~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~ 268 (833)
+|..|+++++|+.|+|++|+|++ +| .|+.+++|++|+|++|.|++.. |..|.
T Consensus 478 -------------------------lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~ 530 (567)
T 1dce_A 478 -------------------------LPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLV 530 (567)
T ss_dssp -------------------------CCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGG
T ss_pred -------------------------cchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHh
Confidence 33445555566666666666664 34 5666666666666666666554 66666
Q ss_pred CCCCCCeEEeecccccCCCCCC---CCCCCccceee
Q 040925 269 NLTKLANLELSSNSLQGNIPSS---LGNCQNLMSFT 301 (833)
Q Consensus 269 ~l~~L~~L~L~~N~l~~~~~~~---~~~l~~L~~L~ 301 (833)
.+++|+.|+|++|++++.+|.. +..+++|+.|+
T Consensus 531 ~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 531 SCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp GCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred cCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccC
Confidence 6666666666666666444321 12355666554
No 372
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.78 E-value=2.6e-19 Score=174.69 Aligned_cols=158 Identities=23% Similarity=0.308 Sum_probs=112.3
Q ss_pred ceeecCCceecccCCcccccccccceeeecCCCccCCCCCc-ccccCCCcCEEeccCCcCCCCCCccccCCCCCcEEeec
Q 040925 298 MSFTASQNKLTGALPHQLLSITTLSLYLDLSNNLLNGSLPL-QVGHLKNLVILDISSNQFSGVIPGTLSTCVCLEYLDIS 376 (833)
Q Consensus 298 ~~L~l~~N~l~~~~p~~~~~~~~ll~~L~ls~N~l~~~~~~-~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~Ls 376 (833)
+.+++++|+++ .+|..+.. .+ +.|++++|.+++..+. .|..+++|++|+|++|+|++..|.+|.++++|++|+|+
T Consensus 11 ~~l~~s~~~l~-~ip~~~~~--~l-~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 86 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIPL--HT-TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG 86 (192)
T ss_dssp TEEECTTSCCS-SCCSCCCT--TC-SEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CEEEcCCCCcC-cCccCCCC--CC-CEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECC
Confidence 34555555554 44443332 22 5677777777655553 47788888888888888888888888888888888888
Q ss_pred CCccccccCccccCCCCCCeEEccCcccCCCchhhhcCCCCCceEECccCcCccccCCCCccCCCccccccCCcCCCCCc
Q 040925 377 SNSFHGVIPLSLSFLKSIKELNVSSNNLSGQIPEFLKNLSVLEFLSLSYNHFEGEVPTKGVFSNKTKISLQGNMKLCGGI 456 (833)
Q Consensus 377 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~l~l~~N~~~c~~~ 456 (833)
+|+|++..+..|..+++|+.|+|++|+|++..|..+..+++|+.|+|++|+|+|.++..+....+....+.++...|+.|
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~~~~~l~~~~~~~~~~~C~~P 166 (192)
T 1w8a_A 87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAP 166 (192)
T ss_dssp SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHHHHHHHHCCSGGGCBBCSS
T ss_pred CCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcchHHHHHHHHcCCCCCCCCCCCC
Confidence 88888888877888888888888888888888888888888888888888888877643322222333455666677766
Q ss_pred ccC
Q 040925 457 DEL 459 (833)
Q Consensus 457 ~~~ 459 (833)
...
T Consensus 167 ~~l 169 (192)
T 1w8a_A 167 SKV 169 (192)
T ss_dssp TTT
T ss_pred hHH
Confidence 543
No 373
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.78 E-value=2.9e-19 Score=190.67 Aligned_cols=285 Identities=12% Similarity=0.046 Sum_probs=216.9
Q ss_pred CcEEEcCCCcCcccCCccccC-CCCCCEEEccCCccc--ccCCccCCCCCCCCEEEcCCCcccccCCccccC--------
Q 040925 1 LQTLAVNDNYLTGQLPDFVGN-LSDLEVIRIMGNSLG--GKIPTTLGLLRNLVSLNVAENKFSGMFPRSICN-------- 69 (833)
Q Consensus 1 L~~L~l~~n~l~~~~~~~~~~-l~~L~~L~l~~n~l~--~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~-------- 69 (833)
|++|.++++ +....-..+.. +++|++|||++|+|. ...+..+ +.+..+.+..|. +.+.+|.+
T Consensus 27 l~~L~l~g~-i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~~~---~~~~~~~~~~~~---I~~~aF~~~~~~~~~g 99 (329)
T 3sb4_A 27 ITHLTLTGK-LNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAGTY---PNGKFYIYMANF---VPAYAFSNVVNGVTKG 99 (329)
T ss_dssp CSEEEEEEE-ECHHHHHHHHHSCTTCCEEEEEEEEECCEEESSSSS---GGGCCEEECTTE---ECTTTTEEEETTEEEE
T ss_pred eeEEEEecc-ccHHHHHHHHHhhccCeEEecCcceeEEecCccccc---cccccccccccc---cCHHHhcccccccccc
Confidence 456777653 22111123334 789999999999996 3333333 336677777774 45678888
Q ss_pred CCCCcEEECCCcccccccCchhhcCCCCccEEEccCCcceeeCCccccCCCCCcEEEcccC----ccccccCcCccCCCc
Q 040925 70 ISSLELIQLALNRFSGNLPFDIVVNLPNLKALAIGGNNFFGSIPYSLSNASNLELLDLSVN----QFKGNVSIDFSSLKN 145 (833)
Q Consensus 70 l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N----~i~~~~~~~~~~l~~ 145 (833)
+++|+.|+|+. .++ .|+..+|.++++|+.|+|++|.+..+.+.+|.++.++..+.+..+ ....+...+|.+..+
T Consensus 100 ~~~L~~l~L~~-~i~-~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~ 177 (329)
T 3sb4_A 100 KQTLEKVILSE-KIK-NIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEP 177 (329)
T ss_dssp CTTCCC-CBCT-TCC-EECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCC
T ss_pred cCCCcEEECCc-ccc-chhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccc
Confidence 99999999999 887 899999999999999999999999899999999988888888774 334566777888888
Q ss_pred Cc-eEecccccCCCCCCCCcccccccCCCCCCCEEEccCCcCcccCChhHhhhcccccEEEccCccccccCChhhhcCCC
Q 040925 146 LL-WLNLEQNNLGTGTATDLDFVTFLTNCSSLKALSLADNQFGGELPHSIANLSSTVINFGIGRNQISGTIPPGIRNLVN 224 (833)
Q Consensus 146 L~-~L~L~~N~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~l~~L~l~~n~i~~~~~~~~~~l~~ 224 (833)
|+ .+.+.... .++. .....-....++..+.+.++-.. .-...+......++.+++.+|+++.+.+.+|.++.+
T Consensus 178 L~~~i~~~~~~--~l~~---~~~~~~~~~~~~~~l~~~~~l~~-~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~ 251 (329)
T 3sb4_A 178 LETTIQVGAMG--KLED---EIMKAGLQPRDINFLTIEGKLDN-ADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKY 251 (329)
T ss_dssp CEEEEEECTTC--CHHH---HHHHTTCCGGGCSEEEEEECCCH-HHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTT
T ss_pred cceeEEecCCC--cHHH---HHhhcccCccccceEEEeeeecH-HHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCC
Confidence 87 55554321 1110 00011123556777777766332 233334444556888999999999888999999999
Q ss_pred CCeEeccCCcccccCCccccCCCCCC-EEEcccccCcccCCccccCCCCCCeEEeecccccCCCCCCCCCCCccceeec
Q 040925 225 LIGFGAEENQLHGTIPDAIGELKNLQ-KLCLFRNFLQGRIPSGLGNLTKLANLELSSNSLQGNIPSSLGNCQNLMSFTA 302 (833)
Q Consensus 225 L~~L~L~~N~l~~~~~~~~~~l~~L~-~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l 302 (833)
|+.|+|.+| +..+.+.+|.++++|+ .+++.+ .++.+.+.+|.++++|+.|++++|+++.+.+.+|.++++|+.++.
T Consensus 252 L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 252 LLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp CCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred CCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 999999998 8888999999999999 999998 788788899999999999999999999888899999999999874
No 374
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.77 E-value=1.7e-18 Score=169.82 Aligned_cols=155 Identities=16% Similarity=0.200 Sum_probs=127.7
Q ss_pred cccCCCCCCEEEccCCcccccCCccCCCCCCCCEEEcCCCcccccCCccccCCCCCcEEECCCcccccccCchhhcCCCC
Q 040925 18 FVGNLSDLEVIRIMGNSLGGKIPTTLGLLRNLVSLNVAENKFSGMFPRSICNISSLELIQLALNRFSGNLPFDIVVNLPN 97 (833)
Q Consensus 18 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~ 97 (833)
....+++|+.|++++|.++ .+| .+..+++|++|++++|.++ .+..+.++++|++|++++|++++..+ ..|..+++
T Consensus 39 ~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~ 113 (197)
T 4ezg_A 39 TEAQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKI-PNLSGLTS 113 (197)
T ss_dssp BHHHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGS-CCCTTCTT
T ss_pred ChhhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccC-hhhcCCCC
Confidence 3467788999999999995 455 6888999999999999876 33478999999999999999984344 44678999
Q ss_pred ccEEEccCCcceeeCCccccCCCCCcEEEcccCc-cccccCcCccCCCcCceEecccccCCCCCCCCcccccccCCCCCC
Q 040925 98 LKALAIGGNNFFGSIPYSLSNASNLELLDLSVNQ-FKGNVSIDFSSLKNLLWLNLEQNNLGTGTATDLDFVTFLTNCSSL 176 (833)
Q Consensus 98 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~l~~L 176 (833)
|++|+|++|.+++..|..|..+++|++|+|++|+ ++.++ .+..+++|++|++++|.++.++ .+..+++|
T Consensus 114 L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~--~l~~l~~L~~L~l~~n~i~~~~--------~l~~l~~L 183 (197)
T 4ezg_A 114 LTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM--PLKTLPELKSLNIQFDGVHDYR--------GIEDFPKL 183 (197)
T ss_dssp CCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG--GGGGCSSCCEEECTTBCCCCCT--------TGGGCSSC
T ss_pred CCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH--hhcCCCCCCEEECCCCCCcChH--------HhccCCCC
Confidence 9999999999987778889999999999999998 87664 6889999999999999997654 26788999
Q ss_pred CEEEccCCcCc
Q 040925 177 KALSLADNQFG 187 (833)
Q Consensus 177 ~~L~Ls~N~l~ 187 (833)
++|++++|++.
T Consensus 184 ~~L~l~~N~i~ 194 (197)
T 4ezg_A 184 NQLYAFSQTIG 194 (197)
T ss_dssp CEEEECBC---
T ss_pred CEEEeeCcccC
Confidence 99999999886
No 375
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.77 E-value=1.4e-19 Score=212.71 Aligned_cols=227 Identities=20% Similarity=0.154 Sum_probs=121.7
Q ss_pred CCCCEEEccCCcccccCCccCCCCCCCCE-----EEcCCCcccccCCccccCCCCCcEEECCCcccccccCchhhcCCCC
Q 040925 23 SDLEVIRIMGNSLGGKIPTTLGLLRNLVS-----LNVAENKFSGMFPRSICNISSLELIQLALNRFSGNLPFDIVVNLPN 97 (833)
Q Consensus 23 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~-----L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~ 97 (833)
+.++.|+|.+|.+.. .+..+....+|.. ++++.|++. ..|+.|..+++|+.|+|++|++. .+|..+| ++++
T Consensus 173 ~~~~~l~L~~n~~~~-~~~~~l~~l~Ls~~~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~-~l~~ 248 (727)
T 4b8c_D 173 PLTPKIELFANGKDE-ANQALLQHKKLSQYSIDEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIF-KYDF 248 (727)
T ss_dssp ---------------------------------------------------CCCCCCEEECTTSCCS-CCCGGGG-GCCS
T ss_pred CccceEEeeCCCCCc-chhhHhhcCccCcccccCcccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhc-CCCC
Confidence 567888998888855 4444333333333 334445555 67899999999999999999998 8998887 8999
Q ss_pred ccEEEccCCcceeeCCccccCCCCCcEEEcccCccccccCcCccCCCcCceEecccccCCCCCCCCcccccccCCCCCCC
Q 040925 98 LKALAIGGNNFFGSIPYSLSNASNLELLDLSVNQFKGNVSIDFSSLKNLLWLNLEQNNLGTGTATDLDFVTFLTNCSSLK 177 (833)
Q Consensus 98 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~l~~L~ 177 (833)
|++|+|++|.|+ .+|..|.++++|++|+|++|+|+.+ +..|.+|++|++|+|++|.|+.++. .|.++++|+
T Consensus 249 L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~l-p~~~~~l~~L~~L~L~~N~l~~lp~-------~~~~l~~L~ 319 (727)
T 4b8c_D 249 LTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLTSL-PAELGSCFQLKYFYFFDNMVTTLPW-------EFGNLCNLQ 319 (727)
T ss_dssp CSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCSSC-CSSGGGGTTCSEEECCSSCCCCCCS-------STTSCTTCC
T ss_pred CCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCCcc-ChhhcCCCCCCEEECCCCCCCccCh-------hhhcCCCcc
Confidence 999999999998 7889999999999999999999955 7789999999999999999987654 378999999
Q ss_pred EEEccCCcCcccCChhHhhhcccccEEEccCccccccCChhhhcCCCCCeEeccCCcccccCCccccCCCCCCEEEcccc
Q 040925 178 ALSLADNQFGGELPHSIANLSSTVINFGIGRNQISGTIPPGIRNLVNLIGFGAEENQLHGTIPDAIGELKNLQKLCLFRN 257 (833)
Q Consensus 178 ~L~Ls~N~l~~~~p~~~~~l~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 257 (833)
+|+|++|+|++.+|..+..+......+++++|.+++.+|.. |..|+++.|... -. ..+
T Consensus 320 ~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~------l~~l~l~~n~~~---~~-------------~~~ 377 (727)
T 4b8c_D 320 FLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHE------RRFIEINTDGEP---QR-------------EYD 377 (727)
T ss_dssp CEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC---------------------------------------
T ss_pred EEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCccc------cceeEeeccccc---cc-------------ccC
Confidence 99999999999999888776544444566666666555543 233344443100 00 011
Q ss_pred cCcccCCccccCCCCCCeEEeeccccc
Q 040925 258 FLQGRIPSGLGNLTKLANLELSSNSLQ 284 (833)
Q Consensus 258 ~l~~~~~~~~~~l~~L~~L~L~~N~l~ 284 (833)
.+.+..+..+..+..++...+++|-+.
T Consensus 378 ~l~~~~~~~~~~l~~~~~~~ls~Nil~ 404 (727)
T 4b8c_D 378 SLQQSTEHLATDLAKRTFTVLSYNTLC 404 (727)
T ss_dssp ------------------------CCC
T ss_pred Cccccccchhhcccccceeeeeccccc
Confidence 333333444555666666777777664
No 376
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.77 E-value=1.9e-17 Score=180.28 Aligned_cols=241 Identities=11% Similarity=0.080 Sum_probs=135.8
Q ss_pred CCCCEEEcCCCcccccCCccccCCCCCcEEECCCcccccccCchhhcCCCCccEEEccCCcceeeCCccccCCCCCcEEE
Q 040925 47 RNLVSLNVAENKFSGMFPRSICNISSLELIQLALNRFSGNLPFDIVVNLPNLKALAIGGNNFFGSIPYSLSNASNLELLD 126 (833)
Q Consensus 47 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 126 (833)
..++.+.+.+ .++.+...+|.++ +|+.+.+..| ++ .|+..+|.+ .+|+.+.|.. .++.+.+.+|.++++|+.++
T Consensus 113 ~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i~-~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~ 186 (401)
T 4fdw_A 113 KGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-LK-SIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKAD 186 (401)
T ss_dssp SSCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-CC-EECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEEE
T ss_pred CCccEEEECC-ccCEehHhhcccC-CccEEEeCCC-cc-EECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCeee
Confidence 4444444443 2333444555543 4555555443 43 445555544 2455555543 34444445555555555555
Q ss_pred cccCccccccCcCccCCCcCceEecccccCCCCCCCCcccccccCCCCCCCEEEccCCcCcccCChhHhhhcccccEEEc
Q 040925 127 LSVNQFKGNVSIDFSSLKNLLWLNLEQNNLGTGTATDLDFVTFLTNCSSLKALSLADNQFGGELPHSIANLSSTVINFGI 206 (833)
Q Consensus 127 L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~l~~L~l 206 (833)
|++|+++.++..+|. .++|+.+.|.. +++.+... .|.++++|+.+++.+| ++.....+|.+ ..++.+.+
T Consensus 187 l~~n~l~~I~~~aF~-~~~L~~l~lp~-~l~~I~~~------aF~~~~~L~~l~l~~~-l~~I~~~aF~~--~~L~~i~l 255 (401)
T 4fdw_A 187 LSKTKITKLPASTFV-YAGIEEVLLPV-TLKEIGSQ------AFLKTSQLKTIEIPEN-VSTIGQEAFRE--SGITTVKL 255 (401)
T ss_dssp CTTSCCSEECTTTTT-TCCCSEEECCT-TCCEECTT------TTTTCTTCCCEECCTT-CCEECTTTTTT--CCCSEEEE
T ss_pred cCCCcceEechhhEe-ecccCEEEeCC-chheehhh------HhhCCCCCCEEecCCC-ccCcccccccc--CCccEEEe
Confidence 555555555555554 24555555542 24443332 2445555555555443 33122222222 23444444
Q ss_pred cCccccccCChhhhcCCCCCeEeccCCccc-----ccCCccccCCCCCCEEEcccccCcccCCccccCCCCCCeEEeecc
Q 040925 207 GRNQISGTIPPGIRNLVNLIGFGAEENQLH-----GTIPDAIGELKNLQKLCLFRNFLQGRIPSGLGNLTKLANLELSSN 281 (833)
Q Consensus 207 ~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~-----~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 281 (833)
.+.++.+...+|.++++|+.+.+.+|.+. .+.+.+|.++++|+.++|. +.++.+...+|.++++|+.++|..|
T Consensus 256 -p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~ 333 (401)
T 4fdw_A 256 -PNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN 333 (401)
T ss_dssp -ETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT
T ss_pred -CCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc
Confidence 23344466777888888888888777665 5667778888888888887 4476677777888888888888554
Q ss_pred cccCCCCCCCCCCCccceeecCCceec
Q 040925 282 SLQGNIPSSLGNCQNLMSFTASQNKLT 308 (833)
Q Consensus 282 ~l~~~~~~~~~~l~~L~~L~l~~N~l~ 308 (833)
++.+.+.+|.++ +|+.+++++|.+.
T Consensus 334 -l~~I~~~aF~~~-~L~~l~l~~n~~~ 358 (401)
T 4fdw_A 334 -VTQINFSAFNNT-GIKEVKVEGTTPP 358 (401)
T ss_dssp -CCEECTTSSSSS-CCCEEEECCSSCC
T ss_pred -ccEEcHHhCCCC-CCCEEEEcCCCCc
Confidence 665667778877 7877777777665
No 377
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.77 E-value=8e-19 Score=172.20 Aligned_cols=155 Identities=17% Similarity=0.204 Sum_probs=115.1
Q ss_pred CCCCCCCCEEEcCCCcccccCCccccCCCCCcEEECCCcccccccCchhhcCCCCccEEEccCCcceeeCCccccCCCCC
Q 040925 43 LGLLRNLVSLNVAENKFSGMFPRSICNISSLELIQLALNRFSGNLPFDIVVNLPNLKALAIGGNNFFGSIPYSLSNASNL 122 (833)
Q Consensus 43 ~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 122 (833)
...+++|++|++++|.|+ .+| .+..+++|++|++++|.++ .++ .+..+++|++|+|++|.+++..+..|+.+++|
T Consensus 40 ~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~-~~~--~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L 114 (197)
T 4ezg_A 40 EAQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT-NYN--PISGLSNLERLRIMGKDVTSDKIPNLSGLTSL 114 (197)
T ss_dssp HHHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS-CCG--GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTC
T ss_pred hhhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC-cch--hhhcCCCCCEEEeECCccCcccChhhcCCCCC
Confidence 366778888888888887 445 5888888888888888775 443 46778888888888888877677788888888
Q ss_pred cEEEcccCccccccCcCccCCCcCceEeccccc-CCCCCCCCcccccccCCCCCCCEEEccCCcCcccCChhHhhhcccc
Q 040925 123 ELLDLSVNQFKGNVSIDFSSLKNLLWLNLEQNN-LGTGTATDLDFVTFLTNCSSLKALSLADNQFGGELPHSIANLSSTV 201 (833)
Q Consensus 123 ~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~l 201 (833)
++|+|++|++++..+..|..+++|++|+|++|. ++.++ .+.++++|++|++++|++++ ++ .+..++ .+
T Consensus 115 ~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~--------~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~-~L 183 (197)
T 4ezg_A 115 TLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM--------PLKTLPELKSLNIQFDGVHD-YR-GIEDFP-KL 183 (197)
T ss_dssp CEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG--------GGGGCSSCCEEECTTBCCCC-CT-TGGGCS-SC
T ss_pred CEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH--------hhcCCCCCCEEECCCCCCcC-hH-HhccCC-CC
Confidence 888888888887667778888888888888887 65542 36678888888888888874 44 555554 47
Q ss_pred cEEEccCccccc
Q 040925 202 INFGIGRNQISG 213 (833)
Q Consensus 202 ~~L~l~~n~i~~ 213 (833)
+.|++++|+|.+
T Consensus 184 ~~L~l~~N~i~~ 195 (197)
T 4ezg_A 184 NQLYAFSQTIGG 195 (197)
T ss_dssp CEEEECBC----
T ss_pred CEEEeeCcccCC
Confidence 888888888753
No 378
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.76 E-value=4.7e-21 Score=218.21 Aligned_cols=193 Identities=20% Similarity=0.205 Sum_probs=147.9
Q ss_pred hcCCCCCeEeccCCcccccCCccccCCCCCCEEEccccc-------------CcccCCccccCCCCCCeEE-eecccccC
Q 040925 220 RNLVNLIGFGAEENQLHGTIPDAIGELKNLQKLCLFRNF-------------LQGRIPSGLGNLTKLANLE-LSSNSLQG 285 (833)
Q Consensus 220 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~-------------l~~~~~~~~~~l~~L~~L~-L~~N~l~~ 285 (833)
..+++|+.|+|++|++. .+|+.++.+++|++|++++|. +.+..|..+.++++|+.|+ ++.|.+
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~-- 422 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYL-- 422 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHH--
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhccc--
Confidence 45667777777777776 567777777777777776654 3344555555566666665 555543
Q ss_pred CCCCCCCCCCccceeecCCceecccCCcccccccccceeeecCCCccCCCCCcccccCCCcCEEeccCCcCCCCCCcccc
Q 040925 286 NIPSSLGNCQNLMSFTASQNKLTGALPHQLLSITTLSLYLDLSNNLLNGSLPLQVGHLKNLVILDISSNQFSGVIPGTLS 365 (833)
Q Consensus 286 ~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~ll~~L~ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~ 365 (833)
.+|..+.+++|.++ .+|.. . ++.|+|++|.|++ +|. |+.+++|+.|+|++|.|+ .+|..|+
T Consensus 423 ---------~~L~~l~l~~n~i~-~l~~~-----~-L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~ 483 (567)
T 1dce_A 423 ---------DDLRSKFLLENSVL-KMEYA-----D-VRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALA 483 (567)
T ss_dssp ---------HHHHHHHHHHHHHH-HHHHT-----T-CSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGG
T ss_pred ---------chhhhhhhhccccc-ccCcc-----C-ceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhh
Confidence 24555556666665 22221 2 3789999999995 565 999999999999999998 6788999
Q ss_pred CCCCCcEEeecCCccccccCccccCCCCCCeEEccCcccCCCc-hhhhcCCCCCceEECccCcCccccCCCC
Q 040925 366 TCVCLEYLDISSNSFHGVIPLSLSFLKSIKELNVSSNNLSGQI-PEFLKNLSVLEFLSLSYNHFEGEVPTKG 436 (833)
Q Consensus 366 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~-p~~l~~l~~L~~L~l~~N~l~~~~~~~~ 436 (833)
.+++|+.|+|++|+|++ +| .+..+++|+.|+|++|+|++.. |..+..+++|+.|+|++|++++.+|...
T Consensus 484 ~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~ 553 (567)
T 1dce_A 484 ALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQE 553 (567)
T ss_dssp GCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTT
T ss_pred cCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHH
Confidence 99999999999999997 45 8999999999999999999877 9999999999999999999999887653
No 379
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.76 E-value=4e-17 Score=178.71 Aligned_cols=335 Identities=12% Similarity=0.085 Sum_probs=183.9
Q ss_pred ccccCCccCCCCCCCCEEEcCCCcccccCCccccCCCCCcEEECCCcccccccCchhhcCCCCccEEEccCCcceeeCCc
Q 040925 35 LGGKIPTTLGLLRNLVSLNVAENKFSGMFPRSICNISSLELIQLALNRFSGNLPFDIVVNLPNLKALAIGGNNFFGSIPY 114 (833)
Q Consensus 35 l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 114 (833)
++.+...+|..+.+|+.+.|.++ ++.+...+|.++++|+.+++..+ ++ .++..+|.++.+|+.+.+..+ +..+...
T Consensus 59 VtsIg~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~c~~L~~i~~p~~-l~~i~~~ 134 (394)
T 4fs7_A 59 VVSIGYAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VK-MIGRCTFSGCYALKSILLPLM-LKSIGVE 134 (394)
T ss_dssp EEEECTTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CC-EECTTTTTTCTTCCCCCCCTT-CCEECTT
T ss_pred EeEhHHHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ce-EccchhhcccccchhhcccCc-eeeecce
Confidence 44555566666666666666533 55566666666666666666543 44 566666666666666655544 3335555
Q ss_pred cccCCCCCcEEEcccCccccccCcCccCCCcCceEecccccCCCCCCCCcccccccCCCCCCCEEEccCCcCcccCChhH
Q 040925 115 SLSNASNLELLDLSVNQFKGNVSIDFSSLKNLLWLNLEQNNLGTGTATDLDFVTFLTNCSSLKALSLADNQFGGELPHSI 194 (833)
Q Consensus 115 ~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~ 194 (833)
+|.+...++.... +.+..+...+|.+.++|+.+.+.++ +..+.. ..|.++++|+.+++..| ++
T Consensus 135 aF~~~~~~~~~~~--~~~~~i~~~aF~~c~~L~~i~l~~~-~~~I~~------~~F~~c~~L~~i~l~~~-~~------- 197 (394)
T 4fs7_A 135 AFKGCDFKEITIP--EGVTVIGDEAFATCESLEYVSLPDS-METLHN------GLFSGCGKLKSIKLPRN-LK------- 197 (394)
T ss_dssp TTTTCCCSEEECC--TTCCEECTTTTTTCTTCCEEECCTT-CCEECT------TTTTTCTTCCBCCCCTT-CC-------
T ss_pred eeecccccccccC--ccccccchhhhcccCCCcEEecCCc-cceecc------ccccCCCCceEEEcCCC-ce-------
Confidence 6665543333222 2223355556666666666666543 233332 23555666666655444 22
Q ss_pred hhhcccccEEEccCccccccCChhhhcCCCCCeEeccCCcccccCCccccCCCCCCEEEcccccCcccCCccccCCCCCC
Q 040925 195 ANLSSTVINFGIGRNQISGTIPPGIRNLVNLIGFGAEENQLHGTIPDAIGELKNLQKLCLFRNFLQGRIPSGLGNLTKLA 274 (833)
Q Consensus 195 ~~l~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 274 (833)
.+...+|.++..|+.+.+..+... + .+.+....+|+.+.+..+ ++.+...+|.++..|+
T Consensus 198 ------------------~I~~~~F~~~~~L~~i~~~~~~~~-i-~~~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~ 256 (394)
T 4fs7_A 198 ------------------IIRDYCFAECILLENMEFPNSLYY-L-GDFALSKTGVKNIIIPDS-FTELGKSVFYGCTDLE 256 (394)
T ss_dssp ------------------EECTTTTTTCTTCCBCCCCTTCCE-E-CTTTTTTCCCCEEEECTT-CCEECSSTTTTCSSCC
T ss_pred ------------------EeCchhhccccccceeecCCCceE-e-ehhhcccCCCceEEECCC-ceecccccccccccce
Confidence 123344555555555555444332 1 222223345555555433 2224445555666666
Q ss_pred eEEeecccccCCCCCCCCCCCccceeecCCceecccCCcccccccccceeeecCCCccCCCCCcccccCCCcCEEeccCC
Q 040925 275 NLELSSNSLQGNIPSSLGNCQNLMSFTASQNKLTGALPHQLLSITTLSLYLDLSNNLLNGSLPLQVGHLKNLVILDISSN 354 (833)
Q Consensus 275 ~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~ll~~L~ls~N~l~~~~~~~~~~l~~L~~L~ls~N 354 (833)
.+.+..+... +...+|..+..++.+....+.+. ...+.....+ ..+.+.++ ++.+...+|.++.+|+.+++..+
T Consensus 257 ~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i~---~~~F~~~~~L-~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~ 330 (394)
T 4fs7_A 257 SISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIVP---EKTFYGCSSL-TEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL 330 (394)
T ss_dssp EEEECCTTCE-ECSCTTTTCTTCCEEEECSSEEC---TTTTTTCTTC-CEEEECTT-CCEECTTTTTTCTTCCEECCCTT
T ss_pred eEEcCCCcce-eeccccccccccceeccCceeec---cccccccccc-cccccccc-cceechhhhcCCCCCCEEEeCCc
Confidence 6666555433 44555556666655555444322 1112222222 34444433 33355667777778888877644
Q ss_pred cCCCCCCccccCCCCCcEEeecCCccccccCccccCCCCCCeEEccCcccCCCchhhhcCCCCCceE
Q 040925 355 QFSGVIPGTLSTCVCLEYLDISSNSFHGVIPLSLSFLKSIKELNVSSNNLSGQIPEFLKNLSVLEFL 421 (833)
Q Consensus 355 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~l~~l~~L~~L 421 (833)
++.+...+|.+|.+|+.+.+..| ++.+...+|.++++|+.+++.++ ++ .....|.++++|+.+
T Consensus 331 -v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-~~-~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 331 -VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR-LE-QYRYDFEDTTKFKWI 393 (394)
T ss_dssp -CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-GG-GGGGGBCTTCEEEEE
T ss_pred -ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC-CE-EhhheecCCCCCcEE
Confidence 66566777888888888888766 66666777888888888877654 33 234566666666653
No 380
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.75 E-value=4.8e-19 Score=208.19 Aligned_cols=178 Identities=22% Similarity=0.224 Sum_probs=105.9
Q ss_pred ccCCCCCCCEEEccCCcCcccCChhHhhhcccccEEEccCccccccCChhhhcCCCCCeEeccCCcccccCCccccCCCC
Q 040925 169 FLTNCSSLKALSLADNQFGGELPHSIANLSSTVINFGIGRNQISGTIPPGIRNLVNLIGFGAEENQLHGTIPDAIGELKN 248 (833)
Q Consensus 169 ~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 248 (833)
.+..+++|+.|+|++|++. .+|..+.++++|++|+|++|+|+ .+|..|+.+++
T Consensus 219 ~~~~l~~L~~L~Ls~n~l~--------------------------~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~ 271 (727)
T 4b8c_D 219 SKYDDQLWHALDLSNLQIF--------------------------NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSN 271 (727)
T ss_dssp ---CCCCCCEEECTTSCCS--------------------------CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTT
T ss_pred hhccCCCCcEEECCCCCCC--------------------------CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCC
Confidence 3556666677777766665 33334446677888888888888 67777888888
Q ss_pred CCEEEcccccCcccCCccccCCCCCCeEEeecccccCCCCCCCCCCCccceeecCCceecccCCcccccccccceeeecC
Q 040925 249 LQKLCLFRNFLQGRIPSGLGNLTKLANLELSSNSLQGNIPSSLGNCQNLMSFTASQNKLTGALPHQLLSITTLSLYLDLS 328 (833)
Q Consensus 249 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~ll~~L~ls 328 (833)
|++|+|++|.|+ .+|..|.++++|++|+|++|.|+ .+|..|..+++|+.|+|++|+|++.+|..+.........++|+
T Consensus 272 L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~ 349 (727)
T 4b8c_D 272 LRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLR 349 (727)
T ss_dssp CCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHH
T ss_pred CCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhc
Confidence 888888888888 56888888888888888888887 6677788888888888888888877777765554433457788
Q ss_pred CCccCCCCCcccccCCCcCEEeccCC--------cCCCCCCccccCCCCCcEEeecCCccc
Q 040925 329 NNLLNGSLPLQVGHLKNLVILDISSN--------QFSGVIPGTLSTCVCLEYLDISSNSFH 381 (833)
Q Consensus 329 ~N~l~~~~~~~~~~l~~L~~L~ls~N--------~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 381 (833)
+|.+++.+|. .|+.|+++.| .+.+..+..+..+..+....+++|-+.
T Consensus 350 ~N~l~~~~p~------~l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~ 404 (727)
T 4b8c_D 350 DNRPEIPLPH------ERRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLC 404 (727)
T ss_dssp HCCCCCCCCC------C-----------------------------------------CCC
T ss_pred cCcccCcCcc------ccceeEeecccccccccCCccccccchhhcccccceeeeeccccc
Confidence 8888877664 4555666666 222233333344444444455555443
No 381
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.74 E-value=1.6e-17 Score=162.05 Aligned_cols=128 Identities=20% Similarity=0.274 Sum_probs=60.7
Q ss_pred CEEEccCCcccccCCccCCCCCCCCEEEcCCCcccccCCc-cccCCCCCcEEECCCcccccccCchhhcCCCCccEEEcc
Q 040925 26 EVIRIMGNSLGGKIPTTLGLLRNLVSLNVAENKFSGMFPR-SICNISSLELIQLALNRFSGNLPFDIVVNLPNLKALAIG 104 (833)
Q Consensus 26 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~-~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~ 104 (833)
++|++++|.+ +.+|..+.. +|++|+|++|+|+++.+. .|.++++|++|+|++|+|+ .+++..|.++++|++|+|+
T Consensus 11 ~~l~~s~~~l-~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~Ls 86 (192)
T 1w8a_A 11 TTVDCTGRGL-KEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLT-GIEPNAFEGASHIQELQLG 86 (192)
T ss_dssp TEEECTTSCC-SSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCC-CBCTTTTTTCTTCCEEECC
T ss_pred CEEEcCCCCc-CcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCC-CcCHhHcCCcccCCEEECC
Confidence 3444444444 233333322 444444444444433332 2444444555555555444 3333444445555555555
Q ss_pred CCcceeeCCccccCCCCCcEEEcccCccccccCcCccCCCcCceEecccccCC
Q 040925 105 GNNFFGSIPYSLSNASNLELLDLSVNQFKGNVSIDFSSLKNLLWLNLEQNNLG 157 (833)
Q Consensus 105 ~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~ 157 (833)
+|+|++..+..|.++++|++|+|++|+|+++.+..|..+++|++|+|++|.++
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred CCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 55555444444555555555555555555555555555555555555555543
No 382
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.74 E-value=3.5e-18 Score=166.56 Aligned_cols=157 Identities=22% Similarity=0.272 Sum_probs=120.6
Q ss_pred ceeecCCceecccCCcccccccccceeeecCCCccCCCCCcccccCCCcCEEeccCCcCCCCCCccccCCCCCcEEeecC
Q 040925 298 MSFTASQNKLTGALPHQLLSITTLSLYLDLSNNLLNGSLPLQVGHLKNLVILDISSNQFSGVIPGTLSTCVCLEYLDISS 377 (833)
Q Consensus 298 ~~L~l~~N~l~~~~p~~~~~~~~ll~~L~ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 377 (833)
+.+++++|.++ .+|..+.. . ++.|++++|.|+ .+|..|.++++|+.|+|++|.|+++.+.+|.++++|++|+|++
T Consensus 13 ~~l~~~~~~l~-~ip~~~~~--~-l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~ 87 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGIPR--D-VTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSY 87 (193)
T ss_dssp TEEECTTSCCS-SCCSCCCT--T-CCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCCC-cCCCCCCC--C-CCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCC
Confidence 34555555555 45544331 2 367888888887 5678899999999999999999988889999999999999999
Q ss_pred CccccccCccccCCCCCCeEEccCcccCCCchhhhcCCCCCceEECccCcCccccCCCCccCCCccccccCCcCCCCCcc
Q 040925 378 NSFHGVIPLSLSFLKSIKELNVSSNNLSGQIPEFLKNLSVLEFLSLSYNHFEGEVPTKGVFSNKTKISLQGNMKLCGGID 457 (833)
Q Consensus 378 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~l~l~~N~~~c~~~~ 457 (833)
|+|+++.+..|..+++|+.|+|++|+|++..+..|..+++|+.|++++|+|.|.+...+...-+.......+...|..|.
T Consensus 88 N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c~l~~l~~~~~~~~~~~~~~~C~~P~ 167 (193)
T 2wfh_A 88 NRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCDCNMQWLSDWVKSEYKEPGIARCAGPG 167 (193)
T ss_dssp SCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECSGGGHHHHHHHHHSSCCCSCCBEEESG
T ss_pred CccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeecCCcCHHHHHHHHhccCCCCCcCcCCch
Confidence 99999888899999999999999999998878889999999999999999999886432111111112233445677766
Q ss_pred cC
Q 040925 458 EL 459 (833)
Q Consensus 458 ~~ 459 (833)
..
T Consensus 168 ~l 169 (193)
T 2wfh_A 168 EM 169 (193)
T ss_dssp GG
T ss_pred HH
Confidence 54
No 383
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.73 E-value=1.4e-16 Score=174.42 Aligned_cols=319 Identities=13% Similarity=0.035 Sum_probs=243.5
Q ss_pred cccccCCccccCCCCCcEEECCCcccccccCchhhcCCCCccEEEccCCcceeeCCccccCCCCCcEEEcccCccccccC
Q 040925 58 KFSGMFPRSICNISSLELIQLALNRFSGNLPFDIVVNLPNLKALAIGGNNFFGSIPYSLSNASNLELLDLSVNQFKGNVS 137 (833)
Q Consensus 58 ~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~ 137 (833)
.++.+...+|.++++|+.+.|.. .++ .|+..+|.++++|+.++|..+ ++.+...+|.++.+|+.+.+..+ +..+..
T Consensus 58 ~VtsIg~~AF~~c~~L~~i~lp~-~i~-~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~ 133 (394)
T 4fs7_A 58 DVVSIGYAAFQGCRKVTEIKIPS-TVR-EIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGV 133 (394)
T ss_dssp EEEEECTTTTTTCTTEEEEECCT-TCC-EECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECT
T ss_pred eEeEhHHHHhhCCCCceEEEeCC-Ccc-CcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecc
Confidence 46677888899999999999974 476 788888999999999999765 66677788888888888877654 666788
Q ss_pred cCccCCCcCceEecccccCCCCCCCCcccccccCCCCCCCEEEccCCcCcccCChhHhhhcccccEEEccCccccccCCh
Q 040925 138 IDFSSLKNLLWLNLEQNNLGTGTATDLDFVTFLTNCSSLKALSLADNQFGGELPHSIANLSSTVINFGIGRNQISGTIPP 217 (833)
Q Consensus 138 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~l~~L~l~~n~i~~~~~~ 217 (833)
.+|.+...+....... +..+.. ..|.++++|+.+.+.++-.. +...
T Consensus 134 ~aF~~~~~~~~~~~~~--~~~i~~------~aF~~c~~L~~i~l~~~~~~--------------------------I~~~ 179 (394)
T 4fs7_A 134 EAFKGCDFKEITIPEG--VTVIGD------EAFATCESLEYVSLPDSMET--------------------------LHNG 179 (394)
T ss_dssp TTTTTCCCSEEECCTT--CCEECT------TTTTTCTTCCEEECCTTCCE--------------------------ECTT
T ss_pred eeeecccccccccCcc--ccccch------hhhcccCCCcEEecCCccce--------------------------eccc
Confidence 8888776544443332 222222 34677888888877654322 5567
Q ss_pred hhhcCCCCCeEeccCCcccccCCccccCCCCCCEEEcccccCcccCCccccCCCCCCeEEeecccccCCCCCCCCCCCcc
Q 040925 218 GIRNLVNLIGFGAEENQLHGTIPDAIGELKNLQKLCLFRNFLQGRIPSGLGNLTKLANLELSSNSLQGNIPSSLGNCQNL 297 (833)
Q Consensus 218 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 297 (833)
+|.++.+|+.+.+..| +..+...+|.+...|+.+.+..+... +.+.+....+|+.+.+..+ ++.+...+|.++.+|
T Consensus 180 ~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~--i~~~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l 255 (394)
T 4fs7_A 180 LFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYY--LGDFALSKTGVKNIIIPDS-FTELGKSVFYGCTDL 255 (394)
T ss_dssp TTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCE--ECTTTTTTCCCCEEEECTT-CCEECSSTTTTCSSC
T ss_pred cccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceE--eehhhcccCCCceEEECCC-ceecccccccccccc
Confidence 8899999999999887 66678889999999999998877654 3444555688999999765 344667789999999
Q ss_pred ceeecCCceecccCCcccccccccceeeecCCCccCCCCCcccccCCCcCEEeccCCcCCCCCCccccCCCCCcEEeecC
Q 040925 298 MSFTASQNKLTGALPHQLLSITTLSLYLDLSNNLLNGSLPLQVGHLKNLVILDISSNQFSGVIPGTLSTCVCLEYLDISS 377 (833)
Q Consensus 298 ~~L~l~~N~l~~~~p~~~~~~~~ll~~L~ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 377 (833)
+.+.+..+... .....+.....+ ..+....+.+ ....|..+.+|+.+.+..+ ++.+...+|.+|.+|+.++|.+
T Consensus 256 ~~~~~~~~~~~-i~~~~F~~~~~l-~~~~~~~~~i---~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~ 329 (394)
T 4fs7_A 256 ESISIQNNKLR-IGGSLFYNCSGL-KKVIYGSVIV---PEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPY 329 (394)
T ss_dssp CEEEECCTTCE-ECSCTTTTCTTC-CEEEECSSEE---CTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCT
T ss_pred eeEEcCCCcce-eecccccccccc-ceeccCceee---ccccccccccccccccccc-cceechhhhcCCCCCCEEEeCC
Confidence 99999887654 333344444444 5566665543 3457889999999999875 7768889999999999999975
Q ss_pred CccccccCccccCCCCCCeEEccCcccCCCchhhhcCCCCCceEECccC
Q 040925 378 NSFHGVIPLSLSFLKSIKELNVSSNNLSGQIPEFLKNLSVLEFLSLSYN 426 (833)
Q Consensus 378 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~l~~l~~L~~L~l~~N 426 (833)
+ ++.+...+|.++++|+.+++..| ++.+...+|.++++|+.+++..|
T Consensus 330 ~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 330 L-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR 376 (394)
T ss_dssp T-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG
T ss_pred c-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC
Confidence 5 77788899999999999999877 77777889999999999998754
No 384
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.71 E-value=1.3e-17 Score=158.94 Aligned_cols=140 Identities=19% Similarity=0.166 Sum_probs=120.9
Q ss_pred cCCCCCCEEEccCCccc-ccCCccCCCCCCCCEEEcCCCcccccCCccccCCCCCcEEECCCcccccccCchhhcCCCCc
Q 040925 20 GNLSDLEVIRIMGNSLG-GKIPTTLGLLRNLVSLNVAENKFSGMFPRSICNISSLELIQLALNRFSGNLPFDIVVNLPNL 98 (833)
Q Consensus 20 ~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L 98 (833)
...++|+.|++++|+++ +.+|..|..+++|++|+|++|.|++. ..|..+++|++|+|++|+++ ...+..+..+++|
T Consensus 21 ~~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L 97 (168)
T 2ell_A 21 RTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIF-GGLDMLAEKLPNL 97 (168)
T ss_dssp SCTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCC-SCCCHHHHHCTTC
T ss_pred CCcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCc-hHHHHHHhhCCCC
Confidence 34478999999999996 57888899999999999999999865 88999999999999999998 4345667789999
Q ss_pred cEEEccCCcceeeCC-ccccCCCCCcEEEcccCccccccC---cCccCCCcCceEecccccCCCCCCC
Q 040925 99 KALAIGGNNFFGSIP-YSLSNASNLELLDLSVNQFKGNVS---IDFSSLKNLLWLNLEQNNLGTGTAT 162 (833)
Q Consensus 99 ~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~i~~~~~---~~~~~l~~L~~L~L~~N~l~~~~~~ 162 (833)
++|+|++|.|++..+ ..|..+++|++|+|++|+++++++ ..|..+++|++|++++|.+..++..
T Consensus 98 ~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 165 (168)
T 2ell_A 98 THLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAPDS 165 (168)
T ss_dssp CEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCCSS
T ss_pred CEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhcccc
Confidence 999999999986432 789999999999999999998776 5889999999999999999876653
No 385
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.71 E-value=5e-17 Score=158.33 Aligned_cols=128 Identities=27% Similarity=0.369 Sum_probs=99.2
Q ss_pred CEEEccCCcccccCCccCCCCCCCCEEEcCCCcccccCCccccCCCCCcEEECCCcccccccCchhhcCCCCccEEEccC
Q 040925 26 EVIRIMGNSLGGKIPTTLGLLRNLVSLNVAENKFSGMFPRSICNISSLELIQLALNRFSGNLPFDIVVNLPNLKALAIGG 105 (833)
Q Consensus 26 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~ 105 (833)
+++++++|.++ .+|..+. ++|++|+|++|+|+ .+|..|.++++|+.|+|++|+|+ .++...|.++++|++|+|++
T Consensus 13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~-~i~~~~f~~l~~L~~L~Ls~ 87 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRIS-TLSNQSFSNMTQLLTLILSY 87 (193)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCC-EeCHhHccCCCCCCEEECCC
Confidence 56777777774 4555443 57888888888887 56677888888888888888887 67777778888888888888
Q ss_pred CcceeeCCccccCCCCCcEEEcccCccccccCcCccCCCcCceEecccccCCC
Q 040925 106 NNFFGSIPYSLSNASNLELLDLSVNQFKGNVSIDFSSLKNLLWLNLEQNNLGT 158 (833)
Q Consensus 106 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~ 158 (833)
|+|+++.|..|.++++|++|+|++|+|+.+++..|..+++|++|+|++|.+..
T Consensus 88 N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 88 NRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC 140 (193)
T ss_dssp SCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred CccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence 88887777778888888888888888887777778888888888888887754
No 386
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.70 E-value=2.9e-17 Score=156.60 Aligned_cols=141 Identities=22% Similarity=0.221 Sum_probs=112.7
Q ss_pred CCCCCEEEcCCCccc-ccCCccccCCCCCcEEECCCcccccccCchhhcCCCCccEEEccCCcceeeCCccccCCCCCcE
Q 040925 46 LRNLVSLNVAENKFS-GMFPRSICNISSLELIQLALNRFSGNLPFDIVVNLPNLKALAIGGNNFFGSIPYSLSNASNLEL 124 (833)
Q Consensus 46 l~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 124 (833)
.++|++|+|++|.++ +.+|..|..+++|+.|+|++|.++ .+ ..|..+++|++|+|++|++++.+|..+..+++|++
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~-~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 99 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI-SV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTH 99 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCC-CC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCE
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCC-Ch--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCE
Confidence 478889999999987 567888888899999999999887 44 56778889999999999988767887888889999
Q ss_pred EEcccCccccccC-cCccCCCcCceEecccccCCCCCCCCcccccccCCCCCCCEEEccCCcCcccCChh
Q 040925 125 LDLSVNQFKGNVS-IDFSSLKNLLWLNLEQNNLGTGTATDLDFVTFLTNCSSLKALSLADNQFGGELPHS 193 (833)
Q Consensus 125 L~L~~N~i~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~ 193 (833)
|+|++|+|++++. ..|..+++|++|+|++|.++..+.. ....+..+++|++|++++|.+. .+|++
T Consensus 100 L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~---~~~~~~~l~~L~~L~l~~n~~~-~~~~~ 165 (168)
T 2ell_A 100 LNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDY---RESVFKLLPQLTYLDGYDREDQ-EAPDS 165 (168)
T ss_dssp EECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTH---HHHHHTTCSSCCEETTEETTSC-BCCSS
T ss_pred EeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHH---HHHHHHhCccCcEecCCCCChh-hcccc
Confidence 9999999887654 6788888999999999988765430 0124778889999999999887 55543
No 387
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.68 E-value=2.7e-16 Score=151.22 Aligned_cols=130 Identities=22% Similarity=0.237 Sum_probs=81.3
Q ss_pred CCEEEccCCcccccCCccCCCCCCCCEEEcCCCcccccCCccccCCCCCcEEECCCcccccccCchhhcCCCCccEEEcc
Q 040925 25 LEVIRIMGNSLGGKIPTTLGLLRNLVSLNVAENKFSGMFPRSICNISSLELIQLALNRFSGNLPFDIVVNLPNLKALAIG 104 (833)
Q Consensus 25 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~ 104 (833)
.+.+++++|+++ .+|..+. ++|++|+|++|+++++.+..|.++++|++|+|++|+++ .+|...|.++++|++|+|+
T Consensus 9 ~~~l~~~~~~l~-~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~ 84 (177)
T 2o6r_A 9 GTEIRCNSKGLT-SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQ-SLPDGVFDKLTKLTILYLH 84 (177)
T ss_dssp TTEEECCSSCCS-SCCTTCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECC
T ss_pred CCEEEecCCCCc-cCCCCCC--CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcce-EeChhHccCCCccCEEECC
Confidence 355666666663 3343332 46666666666666555555666666666666666665 5565666666666666666
Q ss_pred CCcceeeCCccccCCCCCcEEEcccCccccccCcCccCCCcCceEecccccCCC
Q 040925 105 GNNFFGSIPYSLSNASNLELLDLSVNQFKGNVSIDFSSLKNLLWLNLEQNNLGT 158 (833)
Q Consensus 105 ~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~ 158 (833)
+|.|++..+..|.++++|++|+|++|+|+++++..|..+++|++|+|++|.+..
T Consensus 85 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 85 ENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeec
Confidence 666665555556666666666666666666666666666667777777666643
No 388
>4gyi_A RIO2 kinase; protein kinase, ADP complex, phosphoaspartate, acyl-phosphat ribosome biogenesis, Ser/Thr protein kinase; HET: PHD ADP; 2.20A {Chaetomium thermophilum} PDB: 4gyg_A
Probab=99.68 E-value=2.5e-17 Score=174.25 Aligned_cols=138 Identities=14% Similarity=0.184 Sum_probs=101.0
Q ss_pred CCccCceeccCcceEEEEEEECCCceEEEEEEeeccCCc--------------chhH--------HHHHHHHHhhcCCCc
Q 040925 532 EFSSSNMIGQGSFGYVYKGTLGEDEMIVAVKVINLKYKG--------------ASRS--------FVAECEALRNIRHRN 589 (833)
Q Consensus 532 ~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~--------------~~~~--------~~~E~~~l~~l~h~n 589 (833)
=|++...||.|++|.||+|.+. +|+.||||+++..... .... ..+|...|.++.+.+
T Consensus 96 iY~I~~~IG~Gk~a~VY~a~d~-~G~~vAvKi~r~~~~sfr~v~~~r~~~~~~~~~~~~~~~rl~A~kE~~nL~rL~~~g 174 (397)
T 4gyi_A 96 VYSVGSRIGVGKESDIMIVADE-KGKQKVLKIHRLGRISFRTVKANRDYLRNRSTGSWMYLSRLAAIKEFAFMKALYEEG 174 (397)
T ss_dssp CSEEEEEEEECSSEEEEEEECT-TCCEEEEEEECTTEECCCCCC--CEECTTSCHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred EEEecCEeeeCCceEEEEEECC-CCCEEEEEEEecccccHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3899999999999999999986 7999999998632100 0011 234666666665443
Q ss_pred cc--eEeeEeecCCCCCCceEeEEEEecCCCChhhhhccCCCccccccCCHHHHHHHHHHHHHHHHHHhhcCCCCceeeC
Q 040925 590 LI--KIITICSSTDFKGTDFKAFVFEYMENGSLKDWLHQSDDQVEVCKLSLIQRVNIAIDVASAMEYLHHHCQPPMVHGD 667 (833)
Q Consensus 590 iv--~~~~~~~~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~gL~~LH~~~~~~ivH~D 667 (833)
+. ..+++ ...++||||++|++|.++... .....++.|++.||.|||+. ||||||
T Consensus 175 v~vp~p~~~---------~~~~LVME~i~G~~L~~l~~~------------~~~~~l~~qll~~l~~lH~~---gIVHrD 230 (397)
T 4gyi_A 175 FPVPEPIAQ---------SRHTIVMSLVDALPMRQVSSV------------PDPASLYADLIALILRLAKH---GLIHGD 230 (397)
T ss_dssp CSCCCEEEE---------ETTEEEEECCSCEEGGGCCCC------------SCHHHHHHHHHHHHHHHHHT---TEECSC
T ss_pred CCCCeeeec---------cCceEEEEecCCccHhhhccc------------HHHHHHHHHHHHHHHHHHHC---CCcCCC
Confidence 32 22221 123799999999888765432 12356789999999999999 999999
Q ss_pred CCCCCeeecCCC----------cEEEcccccccccCc
Q 040925 668 LKPSNVLLDHDM----------VAHVCDFGLAKFLSD 694 (833)
Q Consensus 668 lkp~NIll~~~~----------~~kL~DfG~a~~~~~ 694 (833)
|||.|||+++++ .+.|+||+-+.....
T Consensus 231 LKp~NILl~~dgd~~d~~~~~~~~~iID~~Q~V~~~h 267 (397)
T 4gyi_A 231 FNEFNILIREEKDAEDPSSITLTPIIIXFPQMVSMDH 267 (397)
T ss_dssp CSTTSEEEEEEECSSCTTSEEEEEEECCCTTCEETTS
T ss_pred CCHHHEEEeCCCCcccccccccceEEEEeCCcccCCC
Confidence 999999998776 389999998875443
No 389
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.67 E-value=7.2e-17 Score=150.45 Aligned_cols=130 Identities=22% Similarity=0.255 Sum_probs=112.5
Q ss_pred CCCCCCEEEccCCccc-ccCCccCCCCCCCCEEEcCCCcccccCCccccCCCCCcEEECCCcccccccCchhhcCCCCcc
Q 040925 21 NLSDLEVIRIMGNSLG-GKIPTTLGLLRNLVSLNVAENKFSGMFPRSICNISSLELIQLALNRFSGNLPFDIVVNLPNLK 99 (833)
Q Consensus 21 ~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~ 99 (833)
..++|+.|++++|.++ +.+|..++.+++|++|+|++|.+++. ..|.++++|++|+|++|++++.+ +..+..+++|+
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~-~~~~~~l~~L~ 91 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGL-EVLAEKCPNLT 91 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCT-HHHHHHCTTCC
T ss_pred CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchH-HHHhhhCCCCC
Confidence 3468999999999997 58888899999999999999999865 78999999999999999998434 45667899999
Q ss_pred EEEccCCcceee-CCccccCCCCCcEEEcccCccccccC---cCccCCCcCceEeccc
Q 040925 100 ALAIGGNNFFGS-IPYSLSNASNLELLDLSVNQFKGNVS---IDFSSLKNLLWLNLEQ 153 (833)
Q Consensus 100 ~L~L~~N~l~~~-~~~~~~~l~~L~~L~L~~N~i~~~~~---~~~~~l~~L~~L~L~~ 153 (833)
+|+|++|.+++. .+..+..+++|++|++++|+++++++ ..|..+++|++|++++
T Consensus 92 ~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 92 HLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp EEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred EEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 999999999864 34789999999999999999998877 6789999999999864
No 390
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.67 E-value=4.2e-16 Score=149.92 Aligned_cols=132 Identities=20% Similarity=0.259 Sum_probs=81.3
Q ss_pred CCEEEcCCCcccccCCccccCCCCCcEEECCCcccccccCchhhcCCCCccEEEccCCcceeeCCccccCCCCCcEEEcc
Q 040925 49 LVSLNVAENKFSGMFPRSICNISSLELIQLALNRFSGNLPFDIVVNLPNLKALAIGGNNFFGSIPYSLSNASNLELLDLS 128 (833)
Q Consensus 49 L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 128 (833)
.+.+++++|+++ .+|..+. ++|+.|++++|+++ .+|...|.++++|++|+|++|++++..+..|.++++|++|+|+
T Consensus 9 ~~~l~~~~~~l~-~~p~~~~--~~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 84 (177)
T 2o6r_A 9 GTEIRCNSKGLT-SVPTGIP--SSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLH 84 (177)
T ss_dssp TTEEECCSSCCS-SCCTTCC--TTCSEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEEEecCCCCc-cCCCCCC--CCCcEEEeCCCccc-EeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECC
Confidence 355666666666 3343332 46666666666665 5565666666666666666666665555556666666666666
Q ss_pred cCccccccCcCccCCCcCceEecccccCCCCCCCCcccccccCCCCCCCEEEccCCcCcccC
Q 040925 129 VNQFKGNVSIDFSSLKNLLWLNLEQNNLGTGTATDLDFVTFLTNCSSLKALSLADNQFGGEL 190 (833)
Q Consensus 129 ~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~~~~ 190 (833)
+|+|+++++..|..+++|++|+|++|.++.++.. .+..+++|++|+|++|.+.+..
T Consensus 85 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~------~~~~l~~L~~L~l~~N~~~~~~ 140 (177)
T 2o6r_A 85 ENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDG------IFDRLTSLQKIWLHTNPWDCSC 140 (177)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTT------TTTTCTTCCEEECCSSCBCCCH
T ss_pred CCCccccCHHHhhCCcccCEEECcCCcceEeCHH------HhcCCcccCEEEecCCCeeccC
Confidence 6666666666666666666666666666654432 2455666666666666666443
No 391
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.67 E-value=8.8e-17 Score=149.85 Aligned_cols=132 Identities=19% Similarity=0.173 Sum_probs=94.2
Q ss_pred CCCCCEEEcCCCccc-ccCCccccCCCCCcEEECCCcccccccCchhhcCCCCccEEEccCCcceeeCCccccCCCCCcE
Q 040925 46 LRNLVSLNVAENKFS-GMFPRSICNISSLELIQLALNRFSGNLPFDIVVNLPNLKALAIGGNNFFGSIPYSLSNASNLEL 124 (833)
Q Consensus 46 l~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 124 (833)
.++|++|++++|.++ +..|..+..+++|+.|++++|.++ .+ ..|..+++|++|+|++|.+++.+|..+..+++|++
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~-~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 92 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT-SI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTH 92 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCC-CC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCE
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCC-Cc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCE
Confidence 366778888888877 566777777888888888888776 44 45677778888888888887666777777778888
Q ss_pred EEcccCcccccc-CcCccCCCcCceEecccccCCCCCCCCcccccccCCCCCCCEEEccC
Q 040925 125 LDLSVNQFKGNV-SIDFSSLKNLLWLNLEQNNLGTGTATDLDFVTFLTNCSSLKALSLAD 183 (833)
Q Consensus 125 L~L~~N~i~~~~-~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~ 183 (833)
|++++|+|++++ +..|..+++|++|++++|.++..+.. ....+..+++|++|++++
T Consensus 93 L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~---~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 93 LNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDY---RENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp EECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTH---HHHHHHHCTTCCEETTBC
T ss_pred EECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHH---HHHHHHHCCCcccccCCC
Confidence 888888877653 35677778888888888877654420 012356677788877763
No 392
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.64 E-value=2.3e-16 Score=151.45 Aligned_cols=134 Identities=15% Similarity=0.208 Sum_probs=89.5
Q ss_pred ccccCCCCCCEEEccCCcccccCCccCCCC-CCCCEEEcCCCcccccCCccccCCCCCcEEECCCcccccccCchhhcCC
Q 040925 17 DFVGNLSDLEVIRIMGNSLGGKIPTTLGLL-RNLVSLNVAENKFSGMFPRSICNISSLELIQLALNRFSGNLPFDIVVNL 95 (833)
Q Consensus 17 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l 95 (833)
..+.++.+|+.|++++|+++. +|. +..+ ++|++|+|++|.|+++ ..|.++++|++|+|++|+|+ .+|+.+|..+
T Consensus 13 ~~~~~~~~L~~L~l~~n~l~~-i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~-~~~~~~~~~l 87 (176)
T 1a9n_A 13 AQYTNAVRDRELDLRGYKIPV-IEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRIC-RIGEGLDQAL 87 (176)
T ss_dssp CEEECTTSCEEEECTTSCCCS-CCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCC-EECSCHHHHC
T ss_pred HhcCCcCCceEEEeeCCCCch-hHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCccc-ccCcchhhcC
Confidence 346667778888888888853 344 4443 3788888888887754 56777777777777777776 6666666777
Q ss_pred CCccEEEccCCcceeeCCc--cccCCCCCcEEEcccCccccccCc---CccCCCcCceEecccccC
Q 040925 96 PNLKALAIGGNNFFGSIPY--SLSNASNLELLDLSVNQFKGNVSI---DFSSLKNLLWLNLEQNNL 156 (833)
Q Consensus 96 ~~L~~L~L~~N~l~~~~~~--~~~~l~~L~~L~L~~N~i~~~~~~---~~~~l~~L~~L~L~~N~l 156 (833)
++|++|+|++|.|+ .+|. .+..+++|++|+|++|.++.++.. .+..+++|++|++++|.+
T Consensus 88 ~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 88 PDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp TTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred CCCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCH
Confidence 77777777777775 3443 667777777777777777654332 355555555555555544
No 393
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.62 E-value=3.1e-14 Score=155.66 Aligned_cols=130 Identities=12% Similarity=0.087 Sum_probs=62.5
Q ss_pred ccccCCC-CCCEEEccCCcccccCCccCCCCCCCCEEEcCCCc---ccccCCccccCCCCCcEEECCCcccccccCchhh
Q 040925 17 DFVGNLS-DLEVIRIMGNSLGGKIPTTLGLLRNLVSLNVAENK---FSGMFPRSICNISSLELIQLALNRFSGNLPFDIV 92 (833)
Q Consensus 17 ~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~---i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 92 (833)
.+|.++. .|+.+.+..+ ++.+...+|.++.+|+.+.+.+|. ++.+...+|.++.+|+.+.+..+ ++ .++..+|
T Consensus 57 ~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~-~I~~~aF 133 (394)
T 4gt6_A 57 RVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VT-EIDSEAF 133 (394)
T ss_dssp TTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CS-EECTTTT
T ss_pred hhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cc-eehhhhh
Confidence 3444442 3555555432 444555555555555555555442 44444555555555555544432 33 4445555
Q ss_pred cCCCCccEEEccCCcceeeCCccccCCCCCcEEEcccCccccccCcCccCCCcCceEecc
Q 040925 93 VNLPNLKALAIGGNNFFGSIPYSLSNASNLELLDLSVNQFKGNVSIDFSSLKNLLWLNLE 152 (833)
Q Consensus 93 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~ 152 (833)
.+..+|+.+.+..+ +..+....|..+.+|+.+.+..+ ++.+...+|.. .+|+.+.+.
T Consensus 134 ~~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~-~~l~~i~ip 190 (394)
T 4gt6_A 134 HHCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTG-TALTQIHIP 190 (394)
T ss_dssp TTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT-CCCSEEEEC
T ss_pred hhhcccccccccce-eeeecccceecccccccccccce-eeEeccccccc-cceeEEEEC
Confidence 55555555555433 22244445555555555555433 33444445543 345555444
No 394
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.60 E-value=6.9e-14 Score=152.94 Aligned_cols=322 Identities=11% Similarity=0.096 Sum_probs=176.0
Q ss_pred ccccCCccCCCCC-CCCEEEcCCCcccccCCccccCCCCCcEEECCCcc---cccccCchhhcCCCCccEEEccCCccee
Q 040925 35 LGGKIPTTLGLLR-NLVSLNVAENKFSGMFPRSICNISSLELIQLALNR---FSGNLPFDIVVNLPNLKALAIGGNNFFG 110 (833)
Q Consensus 35 l~~~~~~~~~~l~-~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~---l~~~~~~~~~~~l~~L~~L~L~~N~l~~ 110 (833)
++.+...+|..+. .|+.+.+-++ ++.+...+|.++++|+.+.++.|. ++ .|+..+|.+..+|+.+.+..+ ++.
T Consensus 51 Vt~Ig~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~-~Ig~~aF~~c~~L~~i~~~~~-~~~ 127 (394)
T 4gt6_A 51 VSKIGDRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVK-KIGRQAFMFCSELTDIPILDS-VTE 127 (394)
T ss_dssp EEEECTTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCC-EECTTTTTTCTTCCBCGGGTT-CSE
T ss_pred eeEcCHhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeee-EechhhchhcccceeeccCCc-cce
Confidence 4455566777663 5777777654 666777778888888888777664 55 677777777777777777655 444
Q ss_pred eCCccccCCCCCcEEEcccCccccccCcCccCCCcCceEecccccCCCCCCCCcccccccCCCCCCCEEEccCCcCcccC
Q 040925 111 SIPYSLSNASNLELLDLSVNQFKGNVSIDFSSLKNLLWLNLEQNNLGTGTATDLDFVTFLTNCSSLKALSLADNQFGGEL 190 (833)
Q Consensus 111 ~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~~~~ 190 (833)
+...+|.++.+|+.+.+..+ +..+....|....+|+.+.+..+ ++.+...+ |. ..+|+.+.+..+-..
T Consensus 128 I~~~aF~~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~a------F~-~~~l~~i~ip~~~~~--- 195 (394)
T 4gt6_A 128 IDSEAFHHCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS-VTAIEERA------FT-GTALTQIHIPAKVTR--- 195 (394)
T ss_dssp ECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTT------TT-TCCCSEEEECTTCCE---
T ss_pred ehhhhhhhhcccccccccce-eeeecccceecccccccccccce-eeEecccc------cc-ccceeEEEECCcccc---
Confidence 66677777777777777643 45577777777777777777644 44444332 22 245666655443222
Q ss_pred ChhHhhhcccccEEEccCccccccCChhhhcCCCCCeEeccCCcccccCCcccc-------------CCCCCCEEEcccc
Q 040925 191 PHSIANLSSTVINFGIGRNQISGTIPPGIRNLVNLIGFGAEENQLHGTIPDAIG-------------ELKNLQKLCLFRN 257 (833)
Q Consensus 191 p~~~~~l~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~-------------~l~~L~~L~L~~N 257 (833)
+...+|.++.++.......+.........+. ....+..+.+. +
T Consensus 196 -----------------------i~~~af~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip-~ 251 (394)
T 4gt6_A 196 -----------------------IGTNAFSECFALSTITSDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIP-N 251 (394)
T ss_dssp -----------------------ECTTTTTTCTTCCEEEECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECC-T
T ss_pred -----------------------cccchhhhccccceecccccccccccceeecccccccccccccccccccceEEcC-C
Confidence 3344555555555555554443321111111 11223333332 1
Q ss_pred cCcccCCccccCCCCCCeEEeecccccCCCCCCCCCCCccceeecCCceecccCCcccccccccceeeecCCCccCCCCC
Q 040925 258 FLQGRIPSGLGNLTKLANLELSSNSLQGNIPSSLGNCQNLMSFTASQNKLTGALPHQLLSITTLSLYLDLSNNLLNGSLP 337 (833)
Q Consensus 258 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~ll~~L~ls~N~l~~~~~ 337 (833)
.++.+...+|.++..|+.+.+.++... +...+|.++++|+.+.+. +.++.+..
T Consensus 252 ~v~~i~~~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~--------------------------~~i~~I~~ 304 (394)
T 4gt6_A 252 GVARIETHAFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFS--------------------------SRITELPE 304 (394)
T ss_dssp TEEEECTTTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECC--------------------------TTCCEECT
T ss_pred cceEcccceeeecccccEEecccccce-ecCcccccccccccccCC--------------------------CcccccCc
Confidence 222233444555555555555443322 334445555555444432 12222344
Q ss_pred cccccCCCcCEEeccCCcCCCCCCccccCCCCCcEEeecCCccccccCccccCCCCCCeEEccCcccCCCchhhhcCCCC
Q 040925 338 LQVGHLKNLVILDISSNQFSGVIPGTLSTCVCLEYLDISSNSFHGVIPLSLSFLKSIKELNVSSNNLSGQIPEFLKNLSV 417 (833)
Q Consensus 338 ~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~l~~l~~ 417 (833)
.+|.++.+|+.+++..+ ++.+...+|.+|.+|+.+.|..+ ++.+...+|.++++|+.+++.+|... -..+.....
T Consensus 305 ~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~---~~~~~~~~~ 379 (394)
T 4gt6_A 305 SVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQ---WNAISTDSG 379 (394)
T ss_dssp TTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHH---HHTCBCCCC
T ss_pred eeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceee---hhhhhccCC
Confidence 55666667777776643 55455666777777777777543 55555666777777777777666543 134555566
Q ss_pred CceEECccCc
Q 040925 418 LEFLSLSYNH 427 (833)
Q Consensus 418 L~~L~l~~N~ 427 (833)
|+.+.+..|.
T Consensus 380 L~~i~i~~~~ 389 (394)
T 4gt6_A 380 LQNLPVAPGS 389 (394)
T ss_dssp C---------
T ss_pred CCEEEeCCCC
Confidence 6666655443
No 395
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.60 E-value=1.3e-15 Score=146.30 Aligned_cols=130 Identities=18% Similarity=0.195 Sum_probs=112.9
Q ss_pred CcEEEcCCCcCcccCCccccCCCCCCEEEccCCcccccCCccCCCCCCCCEEEcCCCcccccCCccccCCCCCcEEECCC
Q 040925 1 LQTLAVNDNYLTGQLPDFVGNLSDLEVIRIMGNSLGGKIPTTLGLLRNLVSLNVAENKFSGMFPRSICNISSLELIQLAL 80 (833)
Q Consensus 1 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~ 80 (833)
|++|++++|+++. +|......++|+.|++++|+|++. ..|+.+++|++|+|++|+|+++.+..|.++++|++|+|++
T Consensus 21 L~~L~l~~n~l~~-i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~ 97 (176)
T 1a9n_A 21 DRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTN 97 (176)
T ss_dssp CEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCS
T ss_pred ceEEEeeCCCCch-hHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCC
Confidence 6899999999994 565444445999999999999765 6899999999999999999977667779999999999999
Q ss_pred cccccccCc-hhhcCCCCccEEEccCCcceeeCCc----cccCCCCCcEEEcccCccccc
Q 040925 81 NRFSGNLPF-DIVVNLPNLKALAIGGNNFFGSIPY----SLSNASNLELLDLSVNQFKGN 135 (833)
Q Consensus 81 N~l~~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~----~~~~l~~L~~L~L~~N~i~~~ 135 (833)
|+++ .+|. ..+..+++|++|+|++|.++ ..|. .+..+++|++||+++|.+...
T Consensus 98 N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~~~ 155 (176)
T 1a9n_A 98 NSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLKER 155 (176)
T ss_dssp CCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHHHH
T ss_pred CcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHHHH
Confidence 9997 7775 56789999999999999998 4565 499999999999999998743
No 396
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.56 E-value=9.3e-15 Score=139.06 Aligned_cols=109 Identities=21% Similarity=0.273 Sum_probs=89.7
Q ss_pred eeeecCCCccCCCCCcccccCCCcCEEeccCCcCCCCCCccccCCCCCcEEeecCCccccccCccccCCCCCCeEEccCc
Q 040925 323 LYLDLSNNLLNGSLPLQVGHLKNLVILDISSNQFSGVIPGTLSTCVCLEYLDISSNSFHGVIPLSLSFLKSIKELNVSSN 402 (833)
Q Consensus 323 ~~L~ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N 402 (833)
+.+++++|.++ .+|..+ .++|++|+|++|+|+++.|..|.++++|++|+|++|+|+++.+..|..+++|+.|+|++|
T Consensus 12 ~~l~~s~n~l~-~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 12 TTVDCSGKSLA-SVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TEEECTTSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcC-ccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 45778888877 455544 378888888888888888888888888888888888888877777888888888888888
Q ss_pred ccCCCchhhhcCCCCCceEECccCcCccccCC
Q 040925 403 NLSGQIPEFLKNLSVLEFLSLSYNHFEGEVPT 434 (833)
Q Consensus 403 ~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~ 434 (833)
+|++..+..|..+++|+.|+|++|+|+|.++.
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~~ 120 (170)
T 3g39_A 89 QLKSIPRGAFDNLKSLTHIWLLNNPWDCACSD 120 (170)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCBCTTBGG
T ss_pred ccCEeCHHHhcCCCCCCEEEeCCCCCCCCchh
Confidence 88877777788888899999999988888763
No 397
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.56 E-value=2.4e-17 Score=161.71 Aligned_cols=161 Identities=19% Similarity=0.204 Sum_probs=102.6
Q ss_pred ccCCCCCCEEEccCCcccccCCc------cCCCCCCCCEEEcCCCcccccCCccccCCCCCcEEECCCcccccccCchhh
Q 040925 19 VGNLSDLEVIRIMGNSLGGKIPT------TLGLLRNLVSLNVAENKFSGMFPRSICNISSLELIQLALNRFSGNLPFDIV 92 (833)
Q Consensus 19 ~~~l~~L~~L~l~~n~l~~~~~~------~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 92 (833)
+.....++.++++++.+.+..|. .|+.+++|++|+|++|++++ +| .|.++++|++|+|++|+++ .+|. .+
T Consensus 14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~-~~ 89 (198)
T 1ds9_A 14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIEN-LD 89 (198)
T ss_dssp HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSS-HH
T ss_pred HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccc-hh
Confidence 34445566666666666665555 67777777777777777774 45 6777777777777777776 5664 44
Q ss_pred cCCCCccEEEccCCcceeeCCccccCCCCCcEEEcccCccccccC-cCccCCCcCceEecccccCCCCCCCC----cccc
Q 040925 93 VNLPNLKALAIGGNNFFGSIPYSLSNASNLELLDLSVNQFKGNVS-IDFSSLKNLLWLNLEQNNLGTGTATD----LDFV 167 (833)
Q Consensus 93 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~----~~~~ 167 (833)
..+++|++|+|++|++++ +| .+..+++|++|+|++|+|+.++. ..+..+++|++|++++|.++...+.. ....
T Consensus 90 ~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~ 167 (198)
T 1ds9_A 90 AVADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRI 167 (198)
T ss_dssp HHHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHH
T ss_pred hcCCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHH
Confidence 556777777777777764 33 46677777777777777776544 45667777777777777764421110 0001
Q ss_pred cccCCCCCCCEEEccCCcCc
Q 040925 168 TFLTNCSSLKALSLADNQFG 187 (833)
Q Consensus 168 ~~l~~l~~L~~L~Ls~N~l~ 187 (833)
..+..+++|+.|| +|.++
T Consensus 168 ~~~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 168 EVVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp HHHHHCSSCSEEC--CGGGT
T ss_pred HHHHhCCCcEEEC--CcccC
Confidence 2256677777776 66655
No 398
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.54 E-value=2.4e-14 Score=136.20 Aligned_cols=108 Identities=19% Similarity=0.266 Sum_probs=90.0
Q ss_pred CCCEEEccCCcccccCCccCCCCCCCCEEEcCCCcccccCCccccCCCCCcEEECCCcccccccCchhhcCCCCccEEEc
Q 040925 24 DLEVIRIMGNSLGGKIPTTLGLLRNLVSLNVAENKFSGMFPRSICNISSLELIQLALNRFSGNLPFDIVVNLPNLKALAI 103 (833)
Q Consensus 24 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L 103 (833)
..+.|++++|+++ .+|..+. ++|++|+|++|+|+++.|..|.++++|++|+|++|+|+ .+|..+|.++++|++|+|
T Consensus 10 ~~~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~f~~l~~L~~L~L 85 (170)
T 3g39_A 10 SGTTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLT-VLPAGVFDKLTQLTQLSL 85 (170)
T ss_dssp ETTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEEC
T ss_pred CCCEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcC-ccChhhccCCCCCCEEEC
Confidence 4578888888884 4666553 78888899999888888888888899999999999888 788888888999999999
Q ss_pred cCCcceeeCCccccCCCCCcEEEcccCccccc
Q 040925 104 GGNNFFGSIPYSLSNASNLELLDLSVNQFKGN 135 (833)
Q Consensus 104 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~ 135 (833)
++|+|+++.+..|.++++|++|+|++|.+...
T Consensus 86 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 86 NDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCA 117 (170)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred CCCccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence 99999877777788999999999999988743
No 399
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.54 E-value=1.9e-14 Score=137.29 Aligned_cols=109 Identities=22% Similarity=0.282 Sum_probs=90.3
Q ss_pred eeeecCCCccCCCCCcccccCCCcCEEeccCCcCCCCCCccccCCCCCcEEeecCCccccccCccccCCCCCCeEEccCc
Q 040925 323 LYLDLSNNLLNGSLPLQVGHLKNLVILDISSNQFSGVIPGTLSTCVCLEYLDISSNSFHGVIPLSLSFLKSIKELNVSSN 402 (833)
Q Consensus 323 ~~L~ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N 402 (833)
..+++++|.++ .+|..+. ++|++|+|++|+|+++.|..|.++++|++|+|++|+|+++++..|..+++|+.|+|++|
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 45788888887 5565553 78888999999988888888888889999999999988877777888889999999999
Q ss_pred ccCCCchhhhcCCCCCceEECccCcCccccCC
Q 040925 403 NLSGQIPEFLKNLSVLEFLSLSYNHFEGEVPT 434 (833)
Q Consensus 403 ~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~ 434 (833)
+|++..+..|..+++|+.|+|++|+|.+.++.
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~~ 123 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWDCECRD 123 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBCTTBGG
T ss_pred ccceeCHHHhccccCCCEEEeCCCCccccccc
Confidence 99877777788889999999999998887763
No 400
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.53 E-value=3.9e-14 Score=135.16 Aligned_cols=107 Identities=15% Similarity=0.247 Sum_probs=92.7
Q ss_pred CCEEEccCCcccccCCccCCCCCCCCEEEcCCCcccccCCccccCCCCCcEEECCCcccccccCchhhcCCCCccEEEcc
Q 040925 25 LEVIRIMGNSLGGKIPTTLGLLRNLVSLNVAENKFSGMFPRSICNISSLELIQLALNRFSGNLPFDIVVNLPNLKALAIG 104 (833)
Q Consensus 25 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~ 104 (833)
-+.+++++|++ +.+|..+. ++|++|+|++|+|+++.|..|.++++|++|+|++|+|+ .+|..+|.++++|++|+|+
T Consensus 14 ~~~l~~~~n~l-~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~ 89 (174)
T 2r9u_A 14 QTLVNCQNIRL-ASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLT-AIPTGVFDKLTQLTQLDLN 89 (174)
T ss_dssp SSEEECCSSCC-SSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECC
T ss_pred CcEEEeCCCCC-CccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCC-ccChhHhCCcchhhEEECC
Confidence 47889999999 56676664 88999999999999888889999999999999999998 7888888899999999999
Q ss_pred CCcceeeCCccccCCCCCcEEEcccCccccc
Q 040925 105 GNNFFGSIPYSLSNASNLELLDLSVNQFKGN 135 (833)
Q Consensus 105 ~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~ 135 (833)
+|+|+++.+..|..+++|++|+|++|.+...
T Consensus 90 ~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~ 120 (174)
T 2r9u_A 90 DNHLKSIPRGAFDNLKSLTHIYLYNNPWDCE 120 (174)
T ss_dssp SSCCCCCCTTTTTTCTTCSEEECCSSCBCTT
T ss_pred CCccceeCHHHhccccCCCEEEeCCCCcccc
Confidence 9999877777799999999999999998743
No 401
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.53 E-value=1.2e-16 Score=156.64 Aligned_cols=135 Identities=25% Similarity=0.316 Sum_probs=70.3
Q ss_pred hhcCCCCCeEeccCCcccccCCc------cccCCCCCCEEEcccccCcccCCccccCCCCCCeEEeecccccCCCCCCCC
Q 040925 219 IRNLVNLIGFGAEENQLHGTIPD------AIGELKNLQKLCLFRNFLQGRIPSGLGNLTKLANLELSSNSLQGNIPSSLG 292 (833)
Q Consensus 219 ~~~l~~L~~L~L~~N~l~~~~~~------~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 292 (833)
+.....++.++++.+.+.+..|. .|..+++|++|+|++|.+++ +| .+.++++|++|+|++|+++ .+|..+.
T Consensus 14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~ 90 (198)
T 1ds9_A 14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDA 90 (198)
T ss_dssp HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHH
T ss_pred HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhh
Confidence 45555666666666666655554 55555666666666666554 33 5555555555555555555 3333333
Q ss_pred CCCccceeecCCceecccCCcccccccccceeeecCCCccCCCCCcccccCCCcCEEeccCCcCCCCCC-ccccCCCCCc
Q 040925 293 NCQNLMSFTASQNKLTGALPHQLLSITTLSLYLDLSNNLLNGSLPLQVGHLKNLVILDISSNQFSGVIP-GTLSTCVCLE 371 (833)
Q Consensus 293 ~l~~L~~L~l~~N~l~~~~p~~~~~~~~ll~~L~ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~-~~~~~l~~L~ 371 (833)
.+++|+.|++++|+++ + +| .+..+++|++|++++|++++..+ ..+..+++|+
T Consensus 91 ~~~~L~~L~L~~N~l~-------------------------~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~ 143 (198)
T 1ds9_A 91 VADTLEELWISYNQIA-------------------------S-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLE 143 (198)
T ss_dssp HHHHCSEEEEEEEECC-------------------------C-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCS
T ss_pred cCCcCCEEECcCCcCC-------------------------c-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCC
Confidence 3444444444444333 2 12 34445555566666665553322 3455555555
Q ss_pred EEeecCCccccc
Q 040925 372 YLDISSNSFHGV 383 (833)
Q Consensus 372 ~L~Ls~N~l~~~ 383 (833)
+|++++|.+++.
T Consensus 144 ~L~l~~N~l~~~ 155 (198)
T 1ds9_A 144 DLLLAGNPLYND 155 (198)
T ss_dssp EEEECSCHHHHH
T ss_pred EEEecCCccccc
Confidence 555555555544
No 402
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.42 E-value=1.8e-13 Score=147.06 Aligned_cols=131 Identities=22% Similarity=0.189 Sum_probs=105.8
Q ss_pred eeecCCC-ccCCCCCcccccCCCcCEEeccC-CcCCCCCCccccCCCCCcEEeecCCccccccCccccCCCCCCeEEccC
Q 040925 324 YLDLSNN-LLNGSLPLQVGHLKNLVILDISS-NQFSGVIPGTLSTCVCLEYLDISSNSFHGVIPLSLSFLKSIKELNVSS 401 (833)
Q Consensus 324 ~L~ls~N-~l~~~~~~~~~~l~~L~~L~ls~-N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~ 401 (833)
.++++++ +|+ .+|. +..+++|+.|+|++ |.|+++++..|.++++|+.|+|++|+|++++|..|..+++|+.|+|++
T Consensus 12 ~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 12 GLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred EEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 4678887 788 4666 88899999999996 999988888999999999999999999999898999999999999999
Q ss_pred cccCCCchhhhcCCCCCceEECccCcCccccCCCC--ccCCCccccccCCcCCCCCcc
Q 040925 402 NNLSGQIPEFLKNLSVLEFLSLSYNHFEGEVPTKG--VFSNKTKISLQGNMKLCGGID 457 (833)
Q Consensus 402 N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~--~~~~~~~l~l~~N~~~c~~~~ 457 (833)
|+|++.++..+..++ |+.|+|++|+|.|.|...+ .|.......+..+...|..+.
T Consensus 90 N~l~~~~~~~~~~~~-L~~l~l~~N~~~c~c~l~~~~~~~~~~~~~l~~~~~~C~~~~ 146 (347)
T 2ifg_A 90 NALESLSWKTVQGLS-LQELVLSGNPLHCSCALRWLQRWEEEGLGGVPEQKLQCHGQG 146 (347)
T ss_dssp SCCSCCCSTTTCSCC-CCEEECCSSCCCCCGGGHHHHHHHHTTCSSCGGGCCCCSSSS
T ss_pred CccceeCHHHcccCC-ceEEEeeCCCccCCCccHHHHHHHHhCcccccccCCCCCCCh
Confidence 999987777777776 9999999999999886431 122223334555677787665
No 403
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.42 E-value=4.5e-15 Score=159.84 Aligned_cols=144 Identities=19% Similarity=0.153 Sum_probs=66.8
Q ss_pred CCccEEEccCCcceeeCCccc-cCCCCCcEEEcccCccccccCcCc-----cCCCcCceEecccccCCCCCCCCcccccc
Q 040925 96 PNLKALAIGGNNFFGSIPYSL-SNASNLELLDLSVNQFKGNVSIDF-----SSLKNLLWLNLEQNNLGTGTATDLDFVTF 169 (833)
Q Consensus 96 ~~L~~L~L~~N~l~~~~~~~~-~~l~~L~~L~L~~N~i~~~~~~~~-----~~l~~L~~L~L~~N~l~~~~~~~~~~~~~ 169 (833)
++|++|+|++|.|+......+ ..+++|++|+|++|+|+......+ ...++|++|+|++|.|+..... .+...
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~--~l~~~ 178 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVA--VLMEG 178 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHH--HHHHH
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHH--HHHHH
Confidence 344444444444432211111 123345555555555543333322 1234555555555555432111 12233
Q ss_pred cCCCCCCCEEEccCCcCcccCChhHhhhcccccEEEccCccccccCChhhhcCCCCCeEeccCCccccc----CCccccC
Q 040925 170 LTNCSSLKALSLADNQFGGELPHSIANLSSTVINFGIGRNQISGTIPPGIRNLVNLIGFGAEENQLHGT----IPDAIGE 245 (833)
Q Consensus 170 l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~----~~~~~~~ 245 (833)
+..+++|++|+|++|+|+...... +...+...++|+.|+|++|.|+.. ++.++..
T Consensus 179 L~~~~~L~~L~Ls~N~l~~~g~~~---------------------L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~ 237 (372)
T 3un9_A 179 LAGNTSVTHLSLLHTGLGDEGLEL---------------------LAAQLDRNRQLQELNVAYNGAGDTAALALARAARE 237 (372)
T ss_dssp HHTCSSCCEEECTTSSCHHHHHHH---------------------HHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHH
T ss_pred HhcCCCcCEEeCCCCCCCcHHHHH---------------------HHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHh
Confidence 445666667777777665322111 122334445566666666665532 2233344
Q ss_pred CCCCCEEEcccccCccc
Q 040925 246 LKNLQKLCLFRNFLQGR 262 (833)
Q Consensus 246 l~~L~~L~L~~N~l~~~ 262 (833)
.++|++|+|++|.|++.
T Consensus 238 ~~~L~~L~Ls~N~i~~~ 254 (372)
T 3un9_A 238 HPSLELLHLYFNELSSE 254 (372)
T ss_dssp CSSCCEEECTTSSCCHH
T ss_pred CCCCCEEeccCCCCCHH
Confidence 56666666666666643
No 404
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.42 E-value=2.2e-11 Score=132.41 Aligned_cols=167 Identities=12% Similarity=0.122 Sum_probs=104.5
Q ss_pred hhcCCCCCeEeccCCcccccCCccccCCCCCCEEEcccccCcccCCccccCCCCCCeEEeecccccCCCCCCCCCCCccc
Q 040925 219 IRNLVNLIGFGAEENQLHGTIPDAIGELKNLQKLCLFRNFLQGRIPSGLGNLTKLANLELSSNSLQGNIPSSLGNCQNLM 298 (833)
Q Consensus 219 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 298 (833)
+.....+..+.+..+.-. +...+|....+|+.+.+..+ +..+...+|.++..|+.+.+..+ ++.+...+|.++.+|+
T Consensus 190 ~~~~~~~~~~~~~~~~~~-i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~ 266 (379)
T 4h09_A 190 YPAAKTGTEFTIPSTVKT-VTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALK 266 (379)
T ss_dssp CCTTCCCSEEECCTTCCE-ECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCC
T ss_pred ccccccccccccccceeE-Eeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhc
Confidence 444445555555444332 55566777777887777654 44466677777788888888765 5556667777777777
Q ss_pred eeecCCceecccCCcccccccccceeeecCCCccCCCCCcccccCCCcCEEeccCCcCCCCCCccccCCCCCcEEeecCC
Q 040925 299 SFTASQNKLTGALPHQLLSITTLSLYLDLSNNLLNGSLPLQVGHLKNLVILDISSNQFSGVIPGTLSTCVCLEYLDISSN 378 (833)
Q Consensus 299 ~L~l~~N~l~~~~p~~~~~~~~ll~~L~ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 378 (833)
.+.+..+ ++ .+...+|.++.+|+.+.+.++.++.+...+|.+|.+|+.+.|..+
T Consensus 267 ~i~l~~~-i~-------------------------~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~ 320 (379)
T 4h09_A 267 TLNFYAK-VK-------------------------TVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA 320 (379)
T ss_dssp EEEECCC-CS-------------------------EECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT
T ss_pred ccccccc-ce-------------------------eccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc
Confidence 6665332 21 123345666677777777777676666677777777777777544
Q ss_pred ccccccCccccCCCCCCeEEccCcccCCCchhhhcCCC
Q 040925 379 SFHGVIPLSLSFLKSIKELNVSSNNLSGQIPEFLKNLS 416 (833)
Q Consensus 379 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~l~~l~ 416 (833)
++.+...+|.++++|+.+.+..+ ++.+-..+|.+..
T Consensus 321 -l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~ 356 (379)
T 4h09_A 321 -LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGSS 356 (379)
T ss_dssp -CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTSS
T ss_pred -ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCCC
Confidence 55566667777777777776544 5545555665553
No 405
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.41 E-value=1.7e-11 Score=133.21 Aligned_cols=147 Identities=13% Similarity=0.088 Sum_probs=72.6
Q ss_pred CChhhhcCCCCCeEeccCCcccccCCccccCCCCCCEEEcccccCcccCCccccCCCCCCeEEeecccccCCCCCCCCCC
Q 040925 215 IPPGIRNLVNLIGFGAEENQLHGTIPDAIGELKNLQKLCLFRNFLQGRIPSGLGNLTKLANLELSSNSLQGNIPSSLGNC 294 (833)
Q Consensus 215 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 294 (833)
....+....+|+.+.+..+ +..+...+|.+..+|+.+.+..+ ++.+...+|.++.+|+.+.+..+ +..+...+|.++
T Consensus 209 ~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c 285 (379)
T 4h09_A 209 TAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGC 285 (379)
T ss_dssp CTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTC
T ss_pred eecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccc
Confidence 3444555555555555443 33344455555555555555444 33344455555555555555433 333444455555
Q ss_pred CccceeecCCceecccCCcccccccccceeeecCCCccCCCCCcccccCCCcCEEeccCCcCCCCCCccccCCCCCcEEe
Q 040925 295 QNLMSFTASQNKLTGALPHQLLSITTLSLYLDLSNNLLNGSLPLQVGHLKNLVILDISSNQFSGVIPGTLSTCVCLEYLD 374 (833)
Q Consensus 295 ~~L~~L~l~~N~l~~~~p~~~~~~~~ll~~L~ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~ 374 (833)
++|+.+.+.++.++ .+...+|.++.+|+.++|..+ ++.+...+|.+|.+|+.+.
T Consensus 286 ~~L~~i~l~~~~i~-------------------------~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ 339 (379)
T 4h09_A 286 SNLTKVVMDNSAIE-------------------------TLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTIS 339 (379)
T ss_dssp TTCCEEEECCTTCC-------------------------EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCC
T ss_pred cccccccccccccc-------------------------eehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEE
Confidence 55554444333322 123344555555555555433 4444455555555555555
Q ss_pred ecCCccccccCccccCC
Q 040925 375 ISSNSFHGVIPLSLSFL 391 (833)
Q Consensus 375 Ls~N~l~~~~~~~~~~l 391 (833)
+..+ ++.+...+|.+.
T Consensus 340 ip~~-v~~I~~~aF~~c 355 (379)
T 4h09_A 340 YPKS-ITLIESGAFEGS 355 (379)
T ss_dssp CCTT-CCEECTTTTTTS
T ss_pred ECCc-cCEEchhHhhCC
Confidence 5433 444444555444
No 406
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.37 E-value=1.1e-14 Score=156.97 Aligned_cols=173 Identities=16% Similarity=0.145 Sum_probs=79.8
Q ss_pred CCCCEEEcCCCcccccCCccccCC-----CCCcEEECCCcccccccCchhhcCCCCccEEEccCCcceeeCCccc-----
Q 040925 47 RNLVSLNVAENKFSGMFPRSICNI-----SSLELIQLALNRFSGNLPFDIVVNLPNLKALAIGGNNFFGSIPYSL----- 116 (833)
Q Consensus 47 ~~L~~L~L~~n~i~~~~~~~~~~l-----~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~----- 116 (833)
++|++|+|++|.|+......|..+ ++|+.|+|++|.+++.-...++..+++|++|+|++|.|+......+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 345555555555553333332222 4555555555555422222233334455555555555543322222
Q ss_pred cCCCCCcEEEcccCccccccCcC----ccCCCcCceEecccccCCCCCCCCcccccccCCCCCCCEEEccCCcCcccCCh
Q 040925 117 SNASNLELLDLSVNQFKGNVSID----FSSLKNLLWLNLEQNNLGTGTATDLDFVTFLTNCSSLKALSLADNQFGGELPH 192 (833)
Q Consensus 117 ~~l~~L~~L~L~~N~i~~~~~~~----~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~ 192 (833)
...++|++|+|++|.|+...... +...++|++|+|++|.|+..... .+...+...++|++|+|++|.|+.....
T Consensus 152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~--~L~~~L~~~~~L~~L~Ls~N~i~~~g~~ 229 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLE--LLAAQLDRNRQLQELNVAYNGAGDTAAL 229 (372)
T ss_dssp STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHH--HHHHHGGGCSCCCEEECCSSCCCHHHHH
T ss_pred hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHH--HHHHHHhcCCCcCeEECCCCCCCHHHHH
Confidence 23455556666666554322222 24455556666666555432111 1123344455566666666666543322
Q ss_pred hHhhh---cccccEEEccCccccccCChhhhc
Q 040925 193 SIANL---SSTVINFGIGRNQISGTIPPGIRN 221 (833)
Q Consensus 193 ~~~~l---~~~l~~L~l~~n~i~~~~~~~~~~ 221 (833)
.+... ...++.|+|++|.|+......+..
T Consensus 230 ~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~ 261 (372)
T 3un9_A 230 ALARAAREHPSLELLHLYFNELSSEGRQVLRD 261 (372)
T ss_dssp HHHHHHHHCSSCCEEECTTSSCCHHHHHHHHH
T ss_pred HHHHHHHhCCCCCEEeccCCCCCHHHHHHHHH
Confidence 22221 123556666666665444444443
No 407
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.35 E-value=1.7e-12 Score=139.36 Aligned_cols=105 Identities=18% Similarity=0.162 Sum_probs=83.0
Q ss_pred CEEEccCC-cccccCCccCCCCCCCCEEEcCC-CcccccCCccccCCCCCcEEECCCcccccccCchhhcCCCCccEEEc
Q 040925 26 EVIRIMGN-SLGGKIPTTLGLLRNLVSLNVAE-NKFSGMFPRSICNISSLELIQLALNRFSGNLPFDIVVNLPNLKALAI 103 (833)
Q Consensus 26 ~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~-n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L 103 (833)
..++++++ +|+ .+|. |..+++|++|+|++ |+|+++.+.+|.++++|+.|+|++|+|+ .+++.+|.++++|++|+|
T Consensus 11 ~~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~l~~L~~L~l 87 (347)
T 2ifg_A 11 SGLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPDAFHFTPRLSRLNL 87 (347)
T ss_dssp SCEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCC-EECTTGGGSCSCCCEEEC
T ss_pred CEEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccc-eeCHHHhcCCcCCCEEeC
Confidence 34677777 774 4666 88888888888885 8888777788888888888888888887 677778888888888888
Q ss_pred cCCcceeeCCccccCCCCCcEEEcccCcccc
Q 040925 104 GGNNFFGSIPYSLSNASNLELLDLSVNQFKG 134 (833)
Q Consensus 104 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~ 134 (833)
++|+|+++.+..|..++ |++|+|.+|++..
T Consensus 88 ~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 88 SFNALESLSWKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp CSSCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred CCCccceeCHHHcccCC-ceEEEeeCCCccC
Confidence 88888876666676666 8888888888874
No 408
>3tm0_A Aminoglycoside 3'-phosphotransferase; protein kinase, phosphorylation, transferase-antibiotic COMP; HET: ANP B31; 2.10A {Enterococcus faecalis} SCOP: d.144.1.6 PDB: 2b0q_A* 1l8t_A* 3q2j_A* 1j7i_A* 1j7u_A* 3h8p_A* 1j7l_A* 2bkk_A*
Probab=99.33 E-value=7.3e-12 Score=128.65 Aligned_cols=148 Identities=17% Similarity=0.173 Sum_probs=115.3
Q ss_pred HHHHHhcCCccCceeccCcceEEEEEEECCCceEEEEEEeeccCCcchhHHHHHHHHHhhcC-CCccceEeeEeecCCCC
Q 040925 525 ELSKATGEFSSSNMIGQGSFGYVYKGTLGEDEMIVAVKVINLKYKGASRSFVAECEALRNIR-HRNLIKIITICSSTDFK 603 (833)
Q Consensus 525 ~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~-h~niv~~~~~~~~~~~~ 603 (833)
.+....++|++....+.|+.+.||++... +..+++|+...........+.+|+++++.+. +..+.++++++...+
T Consensus 8 ~l~~~l~~~~~~~~~~g~s~~~v~~~~~~--~~~~vlK~~~~~~~~~~~~~~~E~~~l~~l~~~~~vP~v~~~~~~~~-- 83 (263)
T 3tm0_A 8 ELKKLIEKYRCVKDTEGMSPAKVYKLVGE--NENLYLKMTDSRYKGTTYDVEREKDMMLWLEGKLPVPKVLHFERHDG-- 83 (263)
T ss_dssp HHHHHHTTSEEEECCSCCSSSEEEEEECS--SCEEEEEEECGGGTTSTTCHHHHHHHHHHHTTTSCCCCEEEEEEETT--
T ss_pred HHHHHhccceeEeeccCCCCCeEEEEECC--CCcEEEEeCCcccCCCHHHHHHHHHHHHHHhcCCCCCeEEEEEecCC--
Confidence 34556678999999999999999999764 6789999986533233457899999999995 677889998875543
Q ss_pred CCceEeEEEEecCCCChhhhhccCCCccccccCCHHHHHHHHHHHHHHHHHHhhcC------------------------
Q 040925 604 GTDFKAFVFEYMENGSLKDWLHQSDDQVEVCKLSLIQRVNIAIDVASAMEYLHHHC------------------------ 659 (833)
Q Consensus 604 ~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~gL~~LH~~~------------------------ 659 (833)
..|+||||++|.++.+.... ......++.+++++++.||+..
T Consensus 84 ---~~~lv~e~i~G~~l~~~~~~-----------~~~~~~~~~~l~~~l~~LH~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (263)
T 3tm0_A 84 ---WSNLLMSEADGVLCSEEYED-----------EQSPEKIIELYAECIRLFHSIDISDCPYTNSLDSRLAELDYLLNND 149 (263)
T ss_dssp ---EEEEEEECCSSEEHHHHCCT-----------TTCHHHHHHHHHHHHHHHHHSCCTTCSCBCCHHHHHHHHHHHHHTT
T ss_pred ---ceEEEEEecCCeehhhccCC-----------cccHHHHHHHHHHHHHHHhCCCcccCCCcchHHHHHHHHHHHHhcc
Confidence 78999999999999876321 1123467889999999999810
Q ss_pred --------------------------------CCCceeeCCCCCCeeecCCCcEEEccccccc
Q 040925 660 --------------------------------QPPMVHGDLKPSNVLLDHDMVAHVCDFGLAK 690 (833)
Q Consensus 660 --------------------------------~~~ivH~Dlkp~NIll~~~~~~kL~DfG~a~ 690 (833)
.+.++|+|++|.||+++++..+.|+||+.+.
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~HgDl~~~Nil~~~~~~~~lIDwe~a~ 212 (263)
T 3tm0_A 150 LADVDCENWEEDTPFKDPRELYDFLKTEKPEEELVFSHGDLGDSNIFVKDGKVSGFIDLGRSG 212 (263)
T ss_dssp CSCCSGGGGSTTCSSSSHHHHHHHHHHCCCCCCEEEECSSCCTTSEEEETTEEEEECCCTTCE
T ss_pred ccccccccccccccCCCHHHHHHHHHhcCCCCCceEECCCCCcCcEEEECCcEEEEEEchhcc
Confidence 1358999999999999876566799999875
No 409
>1nd4_A Aminoglycoside 3'-phosphotransferase; protein kinase, ATPase, kanamycin; HET: KAN; 2.10A {Klebsiella pneumoniae} SCOP: d.144.1.6
Probab=99.13 E-value=1.1e-10 Score=119.74 Aligned_cols=139 Identities=14% Similarity=0.099 Sum_probs=100.2
Q ss_pred HhcCCccCceeccCcceEEEEEEECCCceEEEEEEeeccCCcchhHHHHHHHHHhhcCCCc--cceEeeEeecCCCCCCc
Q 040925 529 ATGEFSSSNMIGQGSFGYVYKGTLGEDEMIVAVKVINLKYKGASRSFVAECEALRNIRHRN--LIKIITICSSTDFKGTD 606 (833)
Q Consensus 529 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~n--iv~~~~~~~~~~~~~~~ 606 (833)
...+|.+....+.|..+.||++... +|..+++|+.... ....+.+|+++++.+.+.+ +.+++++.... +
T Consensus 18 ~~~~~~~~~~~~gg~~~~v~~~~~~-~g~~~vlK~~~~~---~~~~~~~E~~~l~~l~~~~~~vP~~~~~~~~~-----~ 88 (264)
T 1nd4_A 18 RLFGYDWAQQTIGCSDAAVFRLSAQ-GRPVLFVKTDLSG---ALNELQDEAARLSWLATTGVPCAAVLDVVTEA-----G 88 (264)
T ss_dssp TTTTCEEEECSCTTSSCEEEEEECT-TSCCEEEEEECSC---TTSCHHHHHHHHHHHHTTTCCBCCEEEEEECS-----S
T ss_pred hcCCCceEecccCCCCceEEEEecC-CCCeEEEEeCCcc---cchhhhHHHHHHHHHHhCCCCCCeEEEeccCC-----C
Confidence 3445665444446667999999764 6778999997533 3356889999999996544 55688875443 3
Q ss_pred eEeEEEEecCCCChhhhhccCCCccccccCCHHHHHHHHHHHHHHHHHHhhcC---------------------------
Q 040925 607 FKAFVFEYMENGSLKDWLHQSDDQVEVCKLSLIQRVNIAIDVASAMEYLHHHC--------------------------- 659 (833)
Q Consensus 607 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~gL~~LH~~~--------------------------- 659 (833)
..++||||++|.++. ... .+ ...++.++++.++.||+..
T Consensus 89 ~~~~v~e~i~G~~l~--~~~---------~~---~~~~~~~l~~~l~~lh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (264)
T 1nd4_A 89 RDWLLLGEVPGQDLL--SSH---------LA---PAEKVSIMADAMRRLHTLDPATCPFDHQAKHRIERARTRMEAGLVD 154 (264)
T ss_dssp CEEEEEECCSSEETT--TSC---------CC---HHHHHHHHHHHHHHHTTSCGGGCCCBCCHHHHHHHHHHHHHTTCCC
T ss_pred CCEEEEEecCCcccC--cCc---------CC---HhHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHhcCCcc
Confidence 689999999998884 211 11 1256778888888888751
Q ss_pred ----------------------------CCCceeeCCCCCCeeecCCCcEEEccccccc
Q 040925 660 ----------------------------QPPMVHGDLKPSNVLLDHDMVAHVCDFGLAK 690 (833)
Q Consensus 660 ----------------------------~~~ivH~Dlkp~NIll~~~~~~kL~DfG~a~ 690 (833)
.+.++|+|++|.||++++++.+.|+|||.+.
T Consensus 155 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~HgDl~~~Nil~~~~~~~~liD~~~a~ 213 (264)
T 1nd4_A 155 QDDLDEEHQGLAPAELFARLKARMPDGEDLVVTHGDACLPNIMVENGRFSGFIDCGRLG 213 (264)
T ss_dssp TTSCCGGGTTCCHHHHHHHHHHTCCSSCCEEEECSSCCGGGEEEETTEEEEECCCTTCE
T ss_pred chhhhhhccCccHHHHHHHHHHhcCCCCCeEEECCCCCCCcEEEECCcEEEEEcchhcc
Confidence 1139999999999999877667799999876
No 410
>3dxp_A Putative acyl-COA dehydrogenase; protein kinase-like fold, structural genomics, joint center structural genomics, JCSG; 2.32A {Ralstonia eutropha JMP134}
Probab=99.03 E-value=6.8e-10 Score=119.52 Aligned_cols=145 Identities=14% Similarity=0.206 Sum_probs=107.4
Q ss_pred cCceeccCcceEEEEEEECCCceEEEEEEee--ccCC-cchhHHHHHHHHHhhcC--CCccceEeeEeecCCCCCCceEe
Q 040925 535 SSNMIGQGSFGYVYKGTLGEDEMIVAVKVIN--LKYK-GASRSFVAECEALRNIR--HRNLIKIITICSSTDFKGTDFKA 609 (833)
Q Consensus 535 ~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~--~~~~-~~~~~~~~E~~~l~~l~--h~niv~~~~~~~~~~~~~~~~~~ 609 (833)
..+.++.|.++.||++... +..+++|+.. .... .....+.+|+++++.+. +..+.++++++.+... .+..+
T Consensus 42 ~~~~l~~G~sn~~y~v~~~--~~~~vlr~~~~p~~~~~~~~~~~~~E~~~l~~L~~~~vpvP~~~~~~~~~~~--~g~~~ 117 (359)
T 3dxp_A 42 SVEQFKGGQSNPTFKLVTP--GQTYVMRAKPGPKSKLLPSAHAIEREYRVMDALAGTDVPVAKMYALCEDESV--IGRAF 117 (359)
T ss_dssp EEEECCC-CCSCEEEEECS--SCEEEEECCCC----------CHHHHHHHHHHHTTSSSCCCCEEEEECCTTT--TSSCE
T ss_pred eEEEcCCcccceEEEEEEC--CceEEEEeCCCCCCCCCCcHHHHHHHHHHHHHhhcCCCCCCcEEEECCCCCc--cCCeE
Confidence 4578899999999999875 4578888875 3221 22457889999999997 4568889888765431 23578
Q ss_pred EEEEecCCCChhhhhccCCCccccccCCHHHHHHHHHHHHHHHHHHhhcC------------------------------
Q 040925 610 FVFEYMENGSLKDWLHQSDDQVEVCKLSLIQRVNIAIDVASAMEYLHHHC------------------------------ 659 (833)
Q Consensus 610 lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~gL~~LH~~~------------------------------ 659 (833)
+||||++|.++.+.... .++..+...++.++++.|+.||+..
T Consensus 118 ~vme~v~G~~l~~~~~~--------~l~~~~~~~~~~~l~~~La~LH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (359)
T 3dxp_A 118 YIMEFVSGRVLWDQSLP--------GMSPAERTAIYDEMNRVIAAMHTVDYQAIGLGDYGKPGNYFQRQIERWTKQYKLS 189 (359)
T ss_dssp EEEECCCCBCCCCTTCT--------TCCHHHHHHHHHHHHHHHHHHHHSCTTTTTCTTSSCCSCHHHHHHHHHHHHHHHH
T ss_pred EEEEecCCeecCCCccc--------cCCHHHHHHHHHHHHHHHHHHhCCCchhccccccCCCCCchHHHHHHHHHHHHhc
Confidence 99999998777542211 4678888999999999999999731
Q ss_pred -------------------------CCCceeeCCCCCCeeecCCCc--EEEcccccccc
Q 040925 660 -------------------------QPPMVHGDLKPSNVLLDHDMV--AHVCDFGLAKF 691 (833)
Q Consensus 660 -------------------------~~~ivH~Dlkp~NIll~~~~~--~kL~DfG~a~~ 691 (833)
.+.++|+|++|.||+++.++. +.|+||+.+..
T Consensus 190 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~lvHgD~~~~Nil~~~~~~~v~~viDwe~a~~ 248 (359)
T 3dxp_A 190 ETESIPAMDSLMDWLPQHIPQEDADLTSIVHGDYRLDNLMFHPTEPRVLAVLDWELSTL 248 (359)
T ss_dssp CCSCCHHHHHHHHHGGGCCCSTTSSCCEEECSSCSGGGEEECSSSSCEEEECCCTTCEE
T ss_pred CCcCChHHHHHHHHHHhcCCCccCCCceEEeCCCCCCcEEEeCCCCcEEEEECcccccc
Confidence 247999999999999997753 68999998864
No 411
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.95 E-value=8.7e-10 Score=117.42 Aligned_cols=164 Identities=21% Similarity=0.259 Sum_probs=95.7
Q ss_pred hhhcCCCCccEEEccCCcceeeCCccccCCCCCcEEEcccCccccccCcCcc--CCCcCceEeccc--ccCC-CCCCCCc
Q 040925 90 DIVVNLPNLKALAIGGNNFFGSIPYSLSNASNLELLDLSVNQFKGNVSIDFS--SLKNLLWLNLEQ--NNLG-TGTATDL 164 (833)
Q Consensus 90 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~--~l~~L~~L~L~~--N~l~-~~~~~~~ 164 (833)
.++..+|+|+.|+|++|.-. ..+. +. +++|++|+|..|.+.......+. .+++|+.|+|+. |... .....++
T Consensus 166 ~ll~~~P~L~~L~L~g~~~l-~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l 242 (362)
T 2ra8_A 166 PVLDAMPLLNNLKIKGTNNL-SIGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVF 242 (362)
T ss_dssp HHHHTCTTCCEEEEECCBTC-BCCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGT
T ss_pred HHHhcCCCCcEEEEeCCCCc-eecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHH
Confidence 44567788888888777311 1222 33 77888888888877643333333 678888888753 2211 1001111
Q ss_pred cccccc--CCCCCCCEEEccCCcCcccCChhHhhhcccccEEEccCccccccCChhhhcCCCCCeEeccCCcccccC---
Q 040925 165 DFVTFL--TNCSSLKALSLADNQFGGELPHSIANLSSTVINFGIGRNQISGTIPPGIRNLVNLIGFGAEENQLHGTI--- 239 (833)
Q Consensus 165 ~~~~~l--~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~--- 239 (833)
...+ ..+++|++|+|++|.++...+..++.. ..+++|+.|+|+.|.+.+..
T Consensus 243 --~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a----------------------~~~~~L~~LdLs~n~L~d~G~~~ 298 (362)
T 2ra8_A 243 --RPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLES----------------------DILPQLETMDISAGVLTDEGARL 298 (362)
T ss_dssp --GGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHC----------------------SSGGGCSEEECCSSCCBHHHHHH
T ss_pred --HHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhC----------------------ccCCCCCEEECCCCCCChHHHHH
Confidence 1112 247899999999998875443333321 13567777777777776532
Q ss_pred -CccccCCCCCCEEEcccccCcccCCccccC-CCCCCeEEeeccc
Q 040925 240 -PDAIGELKNLQKLCLFRNFLQGRIPSGLGN-LTKLANLELSSNS 282 (833)
Q Consensus 240 -~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~-l~~L~~L~L~~N~ 282 (833)
+..+..+++|+.|+|++|.|+...-..+.. + ...+++++++
T Consensus 299 L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 299 LLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp HHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred HHhhcccCCcceEEECCCCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence 223345677888888888776443333332 2 3557777776
No 412
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.91 E-value=8e-10 Score=117.68 Aligned_cols=186 Identities=17% Similarity=0.151 Sum_probs=107.1
Q ss_pred hhhcCCCCCeEeccCCccc---------ccCCccccCCCCCCEEEccccc-CcccCCccccCCCCCCeEEeecccccCCC
Q 040925 218 GIRNLVNLIGFGAEENQLH---------GTIPDAIGELKNLQKLCLFRNF-LQGRIPSGLGNLTKLANLELSSNSLQGNI 287 (833)
Q Consensus 218 ~~~~l~~L~~L~L~~N~l~---------~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 287 (833)
+...+++|+.|.+..+... +.+...+..+++|+.|+|++|. +. ++. +. +++|+.|+|..|.+....
T Consensus 134 s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~--l~~-~~-~~~L~~L~L~~~~l~~~~ 209 (362)
T 2ra8_A 134 NKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLS--IGK-KP-RPNLKSLEIISGGLPDSV 209 (362)
T ss_dssp THHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCB--CCS-CB-CTTCSEEEEECSBCCHHH
T ss_pred hhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCce--ecc-cc-CCCCcEEEEecCCCChHH
Confidence 3455667777777654321 1233455677788888887773 22 222 33 677888888777765332
Q ss_pred CCCCC--CCCccceeecCCc--eecccCCcccccccccceeeecCCCccCCCCCcccccCCCcCEEeccCCcCCCCCCcc
Q 040925 288 PSSLG--NCQNLMSFTASQN--KLTGALPHQLLSITTLSLYLDLSNNLLNGSLPLQVGHLKNLVILDISSNQFSGVIPGT 363 (833)
Q Consensus 288 ~~~~~--~l~~L~~L~l~~N--~l~~~~p~~~~~~~~ll~~L~ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~ 363 (833)
...+. .+++|+.|+|+.+ ...+. ..+..+..+ +. -..+++|+.|+|++|.+.+..+..
T Consensus 210 l~~l~~~~lp~L~~L~L~~~~~~~~~~--~~~~~l~~~--------------l~--~~~~p~Lr~L~L~~~~i~~~~~~~ 271 (362)
T 2ra8_A 210 VEDILGSDLPNLEKLVLYVGVEDYGFD--GDMNVFRPL--------------FS--KDRFPNLKWLGIVDAEEQNVVVEM 271 (362)
T ss_dssp HHHHHHSBCTTCCEEEEECBCGGGTCC--SCGGGTGGG--------------SC--TTTCTTCCEEEEESCTTHHHHHHH
T ss_pred HHHHHHccCCCCcEEEEeccccccccc--hhHHHHHHH--------------Hh--cCCCCCcCEEeCCCCCCchHHHHH
Confidence 22332 5677777776421 11100 000000000 00 024678888888888886433223
Q ss_pred cc---CCCCCcEEeecCCcccccc----CccccCCCCCCeEEccCcccCCCchhhhcC-CCCCceEECccCc
Q 040925 364 LS---TCVCLEYLDISSNSFHGVI----PLSLSFLKSIKELNVSSNNLSGQIPEFLKN-LSVLEFLSLSYNH 427 (833)
Q Consensus 364 ~~---~l~~L~~L~Ls~N~l~~~~----~~~~~~l~~L~~L~l~~N~l~~~~p~~l~~-l~~L~~L~l~~N~ 427 (833)
+. .+++|+.|+|+.|.|.+.. +..+..+++|+.|+|++|.|+...-..+.. + ...+++++|+
T Consensus 272 la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 272 FLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp HHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred HHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence 32 4678888888888887632 333456788888888888887544444443 2 3457777776
No 413
>3r70_A Aminoglycoside phosphotransferase; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE ADP PE3; 1.80A {Escherichia coli} PDB: 3r6z_A* 3uzr_A* 4dca_A* 3hav_A* 3ham_A*
Probab=98.67 E-value=8.3e-08 Score=101.16 Aligned_cols=136 Identities=19% Similarity=0.215 Sum_probs=101.5
Q ss_pred CCccCceeccCcceEEEEEEECCCceEEEEEEeeccCCcchhHHHHHHHHHhhcCC----CccceEeeEeecCCCCCCce
Q 040925 532 EFSSSNMIGQGSFGYVYKGTLGEDEMIVAVKVINLKYKGASRSFVAECEALRNIRH----RNLIKIITICSSTDFKGTDF 607 (833)
Q Consensus 532 ~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h----~niv~~~~~~~~~~~~~~~~ 607 (833)
.+...+.++.|..+.||++ +..+++|+... ......+.+|.++++.+.+ ..+.+++++ + .
T Consensus 38 ~i~~v~~l~~G~~n~vy~v-----g~~~vlR~~~~--~~~~~~~~~E~~~L~~L~~~~~~~~vP~v~~~----~-----~ 101 (320)
T 3r70_A 38 KINELRYLSSGDDSDTFLC-----NEQYVVKVPKR--DSVRISQKRELELYRFLENCKLSYQIPAVVYQ----S-----D 101 (320)
T ss_dssp CCSCEEEEEECSSEEEEEE-----TTTEEEEEESS--HHHHHHHHHHHHHHHHHTTSCCSSBCCCEEEE----C-----S
T ss_pred ceEEEEeCCCCCCceEEEE-----CCEEEEEeCCc--HHHHHHHHHHHHHHHHHHhcCCCCCcceEEec----C-----C
Confidence 5667788999999999998 44588887642 1224568999999998865 234555554 1 4
Q ss_pred EeEEEEecCCCChhhhhccCCCccccccCCHHHHHHHHHHHHHHHHHHhhcCC---------------------------
Q 040925 608 KAFVFEYMENGSLKDWLHQSDDQVEVCKLSLIQRVNIAIDVASAMEYLHHHCQ--------------------------- 660 (833)
Q Consensus 608 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~gL~~LH~~~~--------------------------- 660 (833)
.++||||++|.++.+.... .++..+...++.++++.++.||+...
T Consensus 102 ~~lvme~i~G~~l~~~~~~--------~l~~~~~~~~~~~l~~~La~LH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (320)
T 3r70_A 102 RFNIMKYIKGERITYEQYH--------KLSEKEKDALAYDEATFLKELHSIEIDCSVSLFSDALVNKKDKFLQDKKLLIS 173 (320)
T ss_dssp SCEEEECCCCBCCCHHHHT--------TSCHHHHHHHHHHHHHHHHHHHHSCCCTTSHHHHTTBCCHHHHHHHHHHHHHH
T ss_pred cEEEEeecCCccccccccc--------cCCHHHHHHHHHHHHHHHHHHhCCCcccCCCccccccccchHHHHHHHHHHHH
Confidence 5899999999888643321 45677778888888888888885421
Q ss_pred ---------------------------------CCceeeCCCCCCeeecCCCcEEEcccccccc
Q 040925 661 ---------------------------------PPMVHGDLKPSNVLLDHDMVAHVCDFGLAKF 691 (833)
Q Consensus 661 ---------------------------------~~ivH~Dlkp~NIll~~~~~~kL~DfG~a~~ 691 (833)
+.++|+|++|.||+++.+..+.|+||+.+..
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~H~D~~~~N~l~~~~~~~~~iD~~~~~~ 237 (320)
T 3r70_A 174 ILEKEQLLTDEMLEHIETIYENILSNAVLFKYTPCLVHNDFSANNMIFRNNRLFGVIDFGDFNV 237 (320)
T ss_dssp HHHHTTCCCHHHHHHHHHHHHHHHTCGGGTCCCCEEECSCCSGGGEEEETTEEEEECCCTTCEE
T ss_pred HHhhcccccccchHHHHHHHHHHHhccccccCCceeeECCCCCCcEEEECCceEEEECCccccc
Confidence 2359999999999999866679999998863
No 414
>3sg8_A APH(2'')-ID; antibiotic resistance enzyme, transferase, aminoglycoside, phosphorylation, transferase-antibiotic complex; HET: TOY; 1.80A {Enterococcus casseliflavus} PDB: 3sg9_A* 3n4v_A 3n4t_A 3n4u_A 3r81_A* 3r80_A* 3r7z_A* 3r82_A* 3vcq_A* 4dbx_A 4de4_A* 4dfb_A* 4dfu_A* 4dt9_A* 4dt8_A* 4dtb_A* 3sgc_A 4dta_A* 3lzh_A
Probab=98.59 E-value=8.1e-08 Score=100.53 Aligned_cols=139 Identities=19% Similarity=0.259 Sum_probs=100.4
Q ss_pred CceeccCcceEEEEEEECCCceEEEEEEeeccCCcchhHHHHHHHHHhhcC-CCc--cceEeeEeecCCCCCCceEeEEE
Q 040925 536 SNMIGQGSFGYVYKGTLGEDEMIVAVKVINLKYKGASRSFVAECEALRNIR-HRN--LIKIITICSSTDFKGTDFKAFVF 612 (833)
Q Consensus 536 ~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~-h~n--iv~~~~~~~~~~~~~~~~~~lv~ 612 (833)
++.++.|....||++. ..+++|+.... .....+.+|+++++.+. +.. +.+++++..... .....|+||
T Consensus 25 i~~~~~G~~n~v~~v~-----~~~vlR~~~~~--~~~~~~~~E~~~l~~l~~~~~v~vP~~~~~~~~~~--~~~~~~~vm 95 (304)
T 3sg8_A 25 IEISGEGNDCIAYEIN-----RDFIFKFPKHS--RGSTNLFNEVNILKRIHNKLPLPIPEVVFTGMPSE--TYQMSFAGF 95 (304)
T ss_dssp CCEEEECSSEEEEEST-----TSEEEEEESSH--HHHHHHHHHHHHHHHHTTSSSSCCCCEEEECCCCS--SCSCSCEEE
T ss_pred eEecCCCCcceEEEEC-----CEEEEEecCCc--chHHHHHHHHHHHHHHHhcCCCCCCceEeecCCCC--CCCcceEEE
Confidence 4678999999999874 34889986422 23567899999999884 322 445555432221 112458899
Q ss_pred EecCCCChhhhhccCCCccccccCCHHHHHHHHHHHHHHHHHHhhcC---------------------------------
Q 040925 613 EYMENGSLKDWLHQSDDQVEVCKLSLIQRVNIAIDVASAMEYLHHHC--------------------------------- 659 (833)
Q Consensus 613 e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~gL~~LH~~~--------------------------------- 659 (833)
|+++|.++.+.... .++..++..++.++++.++.||+..
T Consensus 96 ~~i~G~~l~~~~~~--------~l~~~~~~~~~~~l~~~la~LH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (304)
T 3sg8_A 96 TKIKGVPLTPLLLN--------NLPKQSQNQAAKDLARFLSELHSINISGFKSNLVLDFREKINEDNKKIKKLLSRELKG 167 (304)
T ss_dssp ECCCCEECCHHHHH--------TSCHHHHHHHHHHHHHHHHHHHHSCCTTSCGGGBCCHHHHHHHHHHHHHHHHTTTSCH
T ss_pred cccCCeECCccccc--------cCCHHHHHHHHHHHHHHHHHHHcCCCCCCCccchhhHHHHHHHHHHHHHHHhcccCCc
Confidence 99999888654321 4677788888999999999999621
Q ss_pred ----------------------CCCceeeCCCCCCeeecC--CCcEEEcccccccc
Q 040925 660 ----------------------QPPMVHGDLKPSNVLLDH--DMVAHVCDFGLAKF 691 (833)
Q Consensus 660 ----------------------~~~ivH~Dlkp~NIll~~--~~~~kL~DfG~a~~ 691 (833)
.+.++|+|++|.||++++ ...+.++||+.+..
T Consensus 168 ~~~~~l~~~~~~~l~~~~~~~~~~~~~HgD~~~~N~l~~~~~~~~~~~iD~~~~~~ 223 (304)
T 3sg8_A 168 PQMKKVDDFYRDILENEIYFKYYPCLIHNDFSSDHILFDTEKNTICGIIDFGDAAI 223 (304)
T ss_dssp HHHHHHHHHHHHHHTCGGGTCCCCEEECSCCCGGGEEEETTTTEEEEECCCTTCEE
T ss_pred ccHHHHHHHHHHHHhccccccCCceeEeCCCCcccEEEeCCCCCEEEEEeCCCCcc
Confidence 145899999999999998 45688999998864
No 415
>4gkh_A Aminoglycoside 3'-phosphotransferase APHA1-IAB; pyrazolopyrimidine, 1-Na-PP1, bumped kinase inhibitor, BKI, kinase inhibitor; HET: KAN 0J9; 1.86A {Acinetobacter baumannii} PDB: 4feu_A* 4few_A* 4fex_A* 4fev_A* 4gki_A* 4ej7_A* 3r78_A*
Probab=98.49 E-value=6.4e-07 Score=91.96 Aligned_cols=144 Identities=15% Similarity=0.082 Sum_probs=103.4
Q ss_pred HHhcCCccCceeccCcce-EEEEEEECCCceEEEEEEeeccCCcchhHHHHHHHHHhhcC-CCccceEeeEeecCCCCCC
Q 040925 528 KATGEFSSSNMIGQGSFG-YVYKGTLGEDEMIVAVKVINLKYKGASRSFVAECEALRNIR-HRNLIKIITICSSTDFKGT 605 (833)
Q Consensus 528 ~~~~~y~~~~~lg~G~~g-~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~-h~niv~~~~~~~~~~~~~~ 605 (833)
.....|+. +.+..|..+ .||+......+..+++|+-.. .....+.+|.+.|+.+. +--|.++++++.+.+
T Consensus 22 ~~l~g~~~-~~~~~G~S~~~v~rl~~~~~~~~~~lk~~~~---~~~~~~~~E~~~l~~l~~~vPVP~v~~~~~~~~---- 93 (272)
T 4gkh_A 22 ADLYGYRW-ARDNVGQSGATIYRLYGKPNAPELFLKHGKG---SVANDVTDEMVRLNWLTAFMPLPTIKHFIRTPD---- 93 (272)
T ss_dssp HHHTTCEE-EEEECSSSSCEEEEEECCTTCCCEEEEEEET---HHHHHHHHHHHHHHHHTTTSCCCCEEEEEEETT----
T ss_pred ccccCCeE-EEccCCCcCCeEEEEEecCCCeEEEEEECCC---CCHhHHHHHHHHHHHhccCCCcCeEEEEEEECC----
Confidence 33444543 345556655 699988876778899998653 24567889999999885 334778888876554
Q ss_pred ceEeEEEEecCCCChhhhhccCCCccccccCCHHHHHHHHHHHHHHHHHHhhcC--------------------------
Q 040925 606 DFKAFVFEYMENGSLKDWLHQSDDQVEVCKLSLIQRVNIAIDVASAMEYLHHHC-------------------------- 659 (833)
Q Consensus 606 ~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~gL~~LH~~~-------------------------- 659 (833)
..++|||+++|.++.+..... ......++.+++..|+-||+..
T Consensus 94 -~~~lvme~l~G~~~~~~~~~~----------~~~~~~~~~~l~~~L~~Lh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (272)
T 4gkh_A 94 -DAWLLTTAIPGKTAFQVLEEY----------PDSGENIVDALAVFLRRLHSIPVCNCPFNSDRVFRLAQAQSRMNNGLV 162 (272)
T ss_dssp -EEEEEEECCCSEEHHHHHHHC----------GGGHHHHHHHHHHHHHHHHTSCGGGCCBBCCHHHHHHHHHHHHHTTCC
T ss_pred -eEEEEEEeeCCccccccccCC----------HHHHHHHHHHHHHHHHHhcCCCcccCCcCcccccchhhHHHHHHHhhh
Confidence 789999999998887765432 1223456677777777787531
Q ss_pred -----------------------------CCCceeeCCCCCCeeecCCCcEEEccccccc
Q 040925 660 -----------------------------QPPMVHGDLKPSNVLLDHDMVAHVCDFGLAK 690 (833)
Q Consensus 660 -----------------------------~~~ivH~Dlkp~NIll~~~~~~kL~DfG~a~ 690 (833)
.+.++|+|+.|.||+++.++.+-|+||+.+.
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~HGDl~~~Nil~~~~~~~~viDwe~a~ 222 (272)
T 4gkh_A 163 DASDFDDERNGWPVEQVWKEMHKLLPFSPDSVVTHGDFSLDNLIFDEGKLIGCIDVGRVG 222 (272)
T ss_dssp CGGGCCGGGTTCCHHHHHHHHHTTCCCCCCEEEECSCCCTTSEEEETTEEEEECCCTTCE
T ss_pred hhhhccccccchHHHHHHHHHHhcccccCCcEEEcCCCCCCeEEEECCeEEEEEECcccc
Confidence 1237999999999999987777899999886
No 416
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.48 E-value=2.7e-08 Score=100.17 Aligned_cols=106 Identities=21% Similarity=0.289 Sum_probs=60.3
Q ss_pred ccCCCCCCE--EEccCCcccccCCcc----CCCCCCCCEEEcCCCccccc--CCccccCCCCCcEEECCCcccccccCch
Q 040925 19 VGNLSDLEV--IRIMGNSLGGKIPTT----LGLLRNLVSLNVAENKFSGM--FPRSICNISSLELIQLALNRFSGNLPFD 90 (833)
Q Consensus 19 ~~~l~~L~~--L~l~~n~l~~~~~~~----~~~l~~L~~L~L~~n~i~~~--~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 90 (833)
|...+.|.. ++++.|+. ...+.. ...+++|++|+|++|+|+++ +|..+..+++|+.|+|++|+|++.-..+
T Consensus 137 l~~dp~L~~~~l~l~~N~~-~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~ 215 (267)
T 3rw6_A 137 LRSDPDLVAQNIDVVLNRR-SCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELD 215 (267)
T ss_dssp GGGCHHHHHTTCCCCTTSH-HHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGG
T ss_pred cCCCcchhhcCccccCCHH-HHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhh
Confidence 333344444 55566643 222222 24466777777777777752 3455667777777777777776321222
Q ss_pred hhcCCCCccEEEccCCcceeeCCc-------cccCCCCCcEEE
Q 040925 91 IVVNLPNLKALAIGGNNFFGSIPY-------SLSNASNLELLD 126 (833)
Q Consensus 91 ~~~~l~~L~~L~L~~N~l~~~~~~-------~~~~l~~L~~L~ 126 (833)
.+..+ +|++|+|++|.+++..|. .+..+++|+.||
T Consensus 216 ~l~~l-~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 216 KIKGL-KLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp GGTTS-CCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred hcccC-CcceEEccCCcCccccCcchhHHHHHHHHCcccCeEC
Confidence 23333 777777777777654442 356677777765
No 417
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.46 E-value=2.5e-08 Score=95.70 Aligned_cols=68 Identities=19% Similarity=0.283 Sum_probs=35.1
Q ss_pred CCCCCcEEEcccCcccccc----CcCccCCCcCceEec--ccccCCCCCCCCcccccccCCCCCCCEEEccCCcCc
Q 040925 118 NASNLELLDLSVNQFKGNV----SIDFSSLKNLLWLNL--EQNNLGTGTATDLDFVTFLTNCSSLKALSLADNQFG 187 (833)
Q Consensus 118 ~l~~L~~L~L~~N~i~~~~----~~~~~~l~~L~~L~L--~~N~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~ 187 (833)
..++|++|+|++|.|.... ...+...+.|++|+| ++|.|+.... ..+...+...++|++|+|++|.+.
T Consensus 91 ~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~--~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 91 VNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVE--MEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHH--HHHHHHHHHCSSCCEEECCCSSHH
T ss_pred hCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHH--HHHHHHHHhCCCcCEEeccCCCCC
Confidence 3344555555555554321 223334445555555 5555543211 112334556677888888888875
No 418
>3tdw_A Gentamicin resistance protein; kinase, phosphoryl transfer, antibiotic resistance, transfer; HET: GDP; 1.70A {Enterococcus gallinarum} PDB: 3tdv_A*
Probab=98.46 E-value=7.7e-07 Score=92.93 Aligned_cols=136 Identities=18% Similarity=0.190 Sum_probs=94.2
Q ss_pred CceeccCcceEEEEEEECCCceEEEEEEeeccCCcchhHHHHHHHHHhhcCCC---ccceEeeEeecCCCCCCceEeEEE
Q 040925 536 SNMIGQGSFGYVYKGTLGEDEMIVAVKVINLKYKGASRSFVAECEALRNIRHR---NLIKIITICSSTDFKGTDFKAFVF 612 (833)
Q Consensus 536 ~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~---niv~~~~~~~~~~~~~~~~~~lv~ 612 (833)
.+.++.|....||++ +..+++|+-+ .......+.+|.++++.+.+. .|.+++.++... .+..++||
T Consensus 24 v~~l~~G~~n~v~~v-----g~~~VlR~~~--~~~~~~~~~~E~~~L~~L~~~~~v~VP~~~~~~~~~----~g~~~~v~ 92 (306)
T 3tdw_A 24 VESLGEGFRNYAILV-----NGDWVFRFPK--SQQGADELNKEIQLLPLLVGCVKVNIPQYVYIGKRS----DGNPFVGY 92 (306)
T ss_dssp EEEEEECSSEEEEEE-----TTTEEEEEES--SHHHHHHHHHHHHHHHHHTTTCSSBCCCEEEEEECT----TSCEEEEE
T ss_pred eeecCCCcceeEEEE-----CCEEEEEecC--CchHHHHHHHHHHHHHHHHhcCCCCCCCeEeecccC----CCceEEEE
Confidence 456888999999998 3457888853 222346789999999999642 366777765421 24578999
Q ss_pred EecCCCChhhhhccCCCccccccCCHHHHHHHHHHHHHHHHHHhhc----------------------------------
Q 040925 613 EYMENGSLKDWLHQSDDQVEVCKLSLIQRVNIAIDVASAMEYLHHH---------------------------------- 658 (833)
Q Consensus 613 e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~gL~~LH~~---------------------------------- 658 (833)
||++|.++.+.... .++..+...++.++++.|+.||+.
T Consensus 93 e~i~G~~l~~~~~~--------~l~~~~~~~~~~~lg~~La~LH~~~~~~~~~~g~p~~~w~~~~~~~~~~~~~~~~~~l 164 (306)
T 3tdw_A 93 RKVQGQILGEDGMA--------VLPDDAKDRLALQLAEFMNELSAFPVETAISAGVPVTNLKNKILLLSEAVEDQVFPLL 164 (306)
T ss_dssp ECCCSEECHHHHHT--------TSCHHHHHHHHHHHHHHHHHHHHSCHHHHHHTTCCBCCHHHHHHHHHHHHHHHTGGGS
T ss_pred eccCCeECchhhhh--------hCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCChHHHHHHHHHHHHHHHHhccccc
Confidence 99999888763221 234445555555566665555543
Q ss_pred -----------------------CCCCceeeCCCCCCeeecC---CCc-EEEccccccc
Q 040925 659 -----------------------CQPPMVHGDLKPSNVLLDH---DMV-AHVCDFGLAK 690 (833)
Q Consensus 659 -----------------------~~~~ivH~Dlkp~NIll~~---~~~-~kL~DfG~a~ 690 (833)
..+.++|+|++|.||+++. ++. +.|+||+.+.
T Consensus 165 ~~~~~~~l~~~~~~~l~~~~~~~~~~~~~HgD~~~~N~l~~~~~~~~~~~~~iD~~~a~ 223 (306)
T 3tdw_A 165 DESLRDYLTLRFQSYMTHPVYTRYTPRLIHGDLSPDHFLTNLNSRQTPLTGIIDFGDAA 223 (306)
T ss_dssp CHHHHHHHHHHHHHHHHCHHHHCCCCEEECSCCSGGGEEECTTCSSCCEEEECCCTTCE
T ss_pred chhhHHHHHHHHHHHHhCcccccCCCeeEeCCCCcccEEEecCCCCCceEEEEehhhcC
Confidence 1235699999999999987 455 5899999876
No 419
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.44 E-value=3.6e-08 Score=94.55 Aligned_cols=18 Identities=22% Similarity=0.283 Sum_probs=9.4
Q ss_pred ccCCCCCcEEEcccC-ccc
Q 040925 116 LSNASNLELLDLSVN-QFK 133 (833)
Q Consensus 116 ~~~l~~L~~L~L~~N-~i~ 133 (833)
+...++|++|+|++| .|.
T Consensus 32 l~~~~~L~~L~L~~n~~i~ 50 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIP 50 (185)
T ss_dssp HTTCTTCCEEECTTCTTCC
T ss_pred HhcCCCCCEEEecCCCCCC
Confidence 444455555555555 544
No 420
>3d1u_A Putative fructosamine-3-kinase; YP_290396.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 1.85A {Thermobifida fusca} PDB: 3f7w_A
Probab=98.42 E-value=8.4e-07 Score=91.42 Aligned_cols=77 Identities=14% Similarity=0.122 Sum_probs=60.5
Q ss_pred ccCceeccCcceEEEEEEECCCceEEEEEEeeccCCcchhHHHHHHHHHhhcCCC---ccceEeeEeecCCCCCCceEeE
Q 040925 534 SSSNMIGQGSFGYVYKGTLGEDEMIVAVKVINLKYKGASRSFVAECEALRNIRHR---NLIKIITICSSTDFKGTDFKAF 610 (833)
Q Consensus 534 ~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~---niv~~~~~~~~~~~~~~~~~~l 610 (833)
...+.|+.|.++.||+++.. +|+.++||+...........+..|++.++.+++. .+.+++++. ..++
T Consensus 18 ~~~~~l~gG~~n~vy~v~~~-dG~~~vvK~~~~~~~~~~~~~~~E~~~L~~L~~~~~v~vP~v~~~~---------~~~l 87 (288)
T 3d1u_A 18 AAVAERGHSHRWHLYRVELA-DGTPLFVKALPDDAPALDGLFRAEALGLDWLGRSFGSPVPQVAGWD---------DRTL 87 (288)
T ss_dssp EEEEEEEEETTEEEEEEEET-TSCEEEEEECCTTCCCCTTHHHHHHHHHHHHTCSTTCCSCCEEEEE---------TTEE
T ss_pred cceeeeCCcchhheEEEEeC-CCCeEEEEecCCCCcchhHHHHHHHHHHHHHHhcCCCCcCeEEEec---------CcEE
Confidence 34578999999999999875 6788999997543333456789999999999764 578888763 2489
Q ss_pred EEEecCCCCh
Q 040925 611 VFEYMENGSL 620 (833)
Q Consensus 611 v~e~~~~gsL 620 (833)
||||++++++
T Consensus 88 vme~l~g~~~ 97 (288)
T 3d1u_A 88 AMEWVDERPP 97 (288)
T ss_dssp EEECCCCCCC
T ss_pred EEEecccCCC
Confidence 9999998874
No 421
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.38 E-value=6.8e-08 Score=97.23 Aligned_cols=80 Identities=20% Similarity=0.323 Sum_probs=55.1
Q ss_pred ccCCCcCEEeccCCcCCCC--CCccccCCCCCcEEeecCCccccccCccccCCC--CCCeEEccCcccCCCch-------
Q 040925 341 GHLKNLVILDISSNQFSGV--IPGTLSTCVCLEYLDISSNSFHGVIPLSLSFLK--SIKELNVSSNNLSGQIP------- 409 (833)
Q Consensus 341 ~~l~~L~~L~ls~N~l~~~--~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~--~L~~L~l~~N~l~~~~p------- 409 (833)
.++++|+.|+|++|+|+++ +|..+..+++|+.|+|++|+|++. ..+..+. +|++|+|++|.+.+..|
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 4567788888888888763 345666788888888888888765 2233333 78888888888876444
Q ss_pred hhhcCCCCCceEE
Q 040925 410 EFLKNLSVLEFLS 422 (833)
Q Consensus 410 ~~l~~l~~L~~L~ 422 (833)
..+..+++|+.||
T Consensus 245 ~il~~~P~L~~LD 257 (267)
T 3rw6_A 245 AIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHCTTCCEES
T ss_pred HHHHHCcccCeEC
Confidence 3466777777765
No 422
>3ovc_A Hygromycin-B 4-O-kinase; aminoglycoside phosphotransferase, structural genomics, PSI- protein structure initiative; HET: HY0 PE4; 1.95A {Escherichia coli} PDB: 3tyk_A*
Probab=98.33 E-value=2.5e-06 Score=91.08 Aligned_cols=79 Identities=9% Similarity=0.109 Sum_probs=58.0
Q ss_pred CCccCceeccCcceEEEEEEECCCceEEEEEEeeccCCcchhHHHHHHHHHhhcCCCc--cceEeeEeecCCCCCCceEe
Q 040925 532 EFSSSNMIGQGSFGYVYKGTLGEDEMIVAVKVINLKYKGASRSFVAECEALRNIRHRN--LIKIITICSSTDFKGTDFKA 609 (833)
Q Consensus 532 ~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~n--iv~~~~~~~~~~~~~~~~~~ 609 (833)
.....+.++.|....+|++.. ++..+++|..... ..+..|+.+++.+.... +.++++++...+ +..+
T Consensus 42 ~~~~i~~l~gG~~n~~y~v~~--~g~~~vlK~~~~~-----~~~~~E~~~l~~L~~~gvpvP~vl~~~~~~~----g~~~ 110 (362)
T 3ovc_A 42 SVSDLMQLSEGEESRAFSFDV--GGRGYVLRVNSCA-----DGFYKDRYVYRHFASAALPIPEVLDIGEFSE----SLTY 110 (362)
T ss_dssp CCEEEEEEEECSSEEEEEEEE--TTEEEEEEEESCC-----HHHHHHHHHHHHHCCSSSCCCCEEEEEESSS----SCEE
T ss_pred CCceEEECCCCCcceEEEEEE--CCcEEEEEeCCch-----hhHHHHHHHHHHHHhcCCCCceEEEeccCCC----CCeE
Confidence 344457789999999999986 4778999987422 35889999999986433 567777654432 3678
Q ss_pred EEEEecCCCChh
Q 040925 610 FVFEYMENGSLK 621 (833)
Q Consensus 610 lv~e~~~~gsL~ 621 (833)
+||||++|.++.
T Consensus 111 lv~e~l~G~~l~ 122 (362)
T 3ovc_A 111 CISRRAQGVTLQ 122 (362)
T ss_dssp EEEECCCSEETT
T ss_pred EEEEecCCCCcc
Confidence 999999986664
No 423
>3ats_A Putative uncharacterized protein; hypothetical protein, putative aminoglycoside phosphortransf transferase; 1.67A {Mycobacterium tuberculosis} PDB: 3att_A*
Probab=98.24 E-value=5.1e-06 Score=88.98 Aligned_cols=85 Identities=13% Similarity=0.065 Sum_probs=58.2
Q ss_pred Ccee-ccCcceEEEEEEEC---C---CceEEEEEEeeccC---CcchhHHHHHHHHHhhcC-C--CccceEeeEeecCCC
Q 040925 536 SNMI-GQGSFGYVYKGTLG---E---DEMIVAVKVINLKY---KGASRSFVAECEALRNIR-H--RNLIKIITICSSTDF 602 (833)
Q Consensus 536 ~~~l-g~G~~g~Vy~~~~~---~---~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~-h--~niv~~~~~~~~~~~ 602 (833)
.+.| +.|....+|++... + ++..+++|+..... ......+.+|+++++.+. + -.+.++++++.....
T Consensus 25 ~~~l~~~G~~n~~y~v~~~~~~~~~~~~~~~vlR~~~~~~~~~~~~~~~~~~E~~~l~~L~~~~~vpvP~v~~~~~~~~~ 104 (357)
T 3ats_A 25 ESGVDSTGMSSETIILTARWQQDGRSIQQKLVARVAPAAEDVPVFPTYRLDHQFEVIRLVGELTDVPVPRVRWIETTGDV 104 (357)
T ss_dssp EEEECTTSSEEEEEEEEEEEEETTEEEEEEEEEEECCCGGGCCSSSCCCHHHHHHHHHHHHHHCCSCCCCEEEEECSSTT
T ss_pred EEECCCCCccceEEEEEEecccCCCCCCceEEEEeCCCCCccccCchhHHHHHHHHHHHHhhcCCCCCCcEEEEccCCCc
Confidence 4667 88989999998763 1 16678899865332 112356889999999884 3 357788887644321
Q ss_pred CCCceEeEEEEecCCCChhh
Q 040925 603 KGTDFKAFVFEYMENGSLKD 622 (833)
Q Consensus 603 ~~~~~~~lv~e~~~~gsL~~ 622 (833)
.+..++||||++|.++.+
T Consensus 105 --~g~~~~v~e~l~G~~l~~ 122 (357)
T 3ats_A 105 --LGTPFFLMDYVEGVVPPD 122 (357)
T ss_dssp --TSSCEEEEECCCCBCCCB
T ss_pred --cCCceEEEEecCCCChhh
Confidence 134679999999877654
No 424
>2olc_A MTR kinase, methylthioribose kinase; kinase ADP-2HO complex, transferase; HET: CPS ADP; 2.00A {Bacillus subtilis} SCOP: d.144.1.6 PDB: 2pu8_A* 2pui_A* 2pul_A* 2pun_A* 2pup_A*
Probab=98.09 E-value=1.1e-05 Score=87.78 Aligned_cols=76 Identities=18% Similarity=0.129 Sum_probs=50.2
Q ss_pred CceeccCcceEEEEEEECCCceEEEEEEeeccCC-------cchhHHHHHHHHHhhcCC--C-ccceEeeEeecCCCCCC
Q 040925 536 SNMIGQGSFGYVYKGTLGEDEMIVAVKVINLKYK-------GASRSFVAECEALRNIRH--R-NLIKIITICSSTDFKGT 605 (833)
Q Consensus 536 ~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~-------~~~~~~~~E~~~l~~l~h--~-niv~~~~~~~~~~~~~~ 605 (833)
.+.+|.|..+.||+++...+++.|+||....... ...+++..|.++++.+.. | .+.+++.+. .+
T Consensus 35 ~~~lg~G~~n~vyrv~~~~~~~~~vvK~~~~~~r~~~~~~~~~~~r~~~E~~~L~~l~~~~~~~vP~~~~~d--~~---- 108 (397)
T 2olc_A 35 CQEIGDGNLNYVFHIYDQEHDRALIIKQAVPYAKVVGESWPLTIDRARIESSALIRQGEHVPHLVPRVFYSD--TE---- 108 (397)
T ss_dssp EEECCSSSSEEEEEEEC----CEEEEEEECCC-------CCCCTTHHHHHHHHHHHHHTTCGGGSCCEEEEE--TT----
T ss_pred EEECCCCceEEEEEEEECCCCcEEEEEecchhhcccCCCCcCcHHHHHHHHHHHHHhhhhCCCCcCeEEEEc--CC----
Confidence 4689999999999997655677899998653211 223567889999988842 3 345666542 11
Q ss_pred ceEeEEEEecCCC
Q 040925 606 DFKAFVFEYMENG 618 (833)
Q Consensus 606 ~~~~lv~e~~~~g 618 (833)
..++||||+++.
T Consensus 109 -~~~lvmE~l~g~ 120 (397)
T 2olc_A 109 -MAVTVMEDLSHL 120 (397)
T ss_dssp -TTEEEECCCTTS
T ss_pred -ccEEEEEeCCCc
Confidence 347999999763
No 425
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.94 E-value=2.9e-06 Score=78.94 Aligned_cols=83 Identities=13% Similarity=0.077 Sum_probs=44.4
Q ss_pred CCCCEEEcCCCcccccCCccccCCCCCcEEECCCcc-cccccCchhhcCC----CCccEEEccCCc-ceeeCCccccCCC
Q 040925 47 RNLVSLNVAENKFSGMFPRSICNISSLELIQLALNR-FSGNLPFDIVVNL----PNLKALAIGGNN-FFGSIPYSLSNAS 120 (833)
Q Consensus 47 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~~l----~~L~~L~L~~N~-l~~~~~~~~~~l~ 120 (833)
.+|++|||++|.|+...-..+.++++|+.|+|++|. |++ -.-..+..+ ++|++|+|++|. |++.--..+..++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD-~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~ 139 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIED-GCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFR 139 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCH-HHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCH-HHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCC
Confidence 457777777777765555566666667777666664 441 111112222 245555555553 4433333344555
Q ss_pred CCcEEEcccC
Q 040925 121 NLELLDLSVN 130 (833)
Q Consensus 121 ~L~~L~L~~N 130 (833)
+|++|+|+++
T Consensus 140 ~L~~L~L~~c 149 (176)
T 3e4g_A 140 NLKYLFLSDL 149 (176)
T ss_dssp TCCEEEEESC
T ss_pred CCCEEECCCC
Confidence 5555555555
No 426
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.87 E-value=5.7e-06 Score=76.95 Aligned_cols=84 Identities=17% Similarity=0.120 Sum_probs=55.8
Q ss_pred CCcCEEeccCCcCCCCCCccccCCCCCcEEeecCCc-cccccCccccCC----CCCCeEEccCcc-cCCCchhhhcCCCC
Q 040925 344 KNLVILDISSNQFSGVIPGTLSTCVCLEYLDISSNS-FHGVIPLSLSFL----KSIKELNVSSNN-LSGQIPEFLKNLSV 417 (833)
Q Consensus 344 ~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l----~~L~~L~l~~N~-l~~~~p~~l~~l~~ 417 (833)
.+|+.||++++.|+...-..+.++++|+.|+|++|. |++.--..+..+ ++|+.|+|++|. +|..--..+..+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 467777777777766555566777777888887774 654333334443 367788887764 66554556667777
Q ss_pred CceEECccCc
Q 040925 418 LEFLSLSYNH 427 (833)
Q Consensus 418 L~~L~l~~N~ 427 (833)
|+.|++++++
T Consensus 141 L~~L~L~~c~ 150 (176)
T 3e4g_A 141 LKYLFLSDLP 150 (176)
T ss_dssp CCEEEEESCT
T ss_pred CCEEECCCCC
Confidence 8888777654
No 427
>3jr1_A Putative fructosamine-3-kinase; YP_719053.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 2.32A {Haemophilus somnus 129PT}
Probab=97.77 E-value=0.00014 Score=75.27 Aligned_cols=75 Identities=16% Similarity=0.145 Sum_probs=58.3
Q ss_pred CceeccCcceEEEEEEECCCceEEEEEEeeccCCcchhHHHHHHHHHhhcC---CCccceEeeEeecCCCCCCceEeEEE
Q 040925 536 SNMIGQGSFGYVYKGTLGEDEMIVAVKVINLKYKGASRSFVAECEALRNIR---HRNLIKIITICSSTDFKGTDFKAFVF 612 (833)
Q Consensus 536 ~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~---h~niv~~~~~~~~~~~~~~~~~~lv~ 612 (833)
.+.|+.|....+|++.. ++..+++|+.... ....+..|.+.|+.+. ...+.++++++... +..++||
T Consensus 41 ~~~l~gG~~n~~y~v~~--~~~~~vlK~~~~~---~~~~~~~E~~~L~~L~~~~~v~VP~vl~~~~~~-----g~~~lvm 110 (312)
T 3jr1_A 41 KEKLYSGEMNEIWLIND--EVQTVFVKINERS---YRSMFRAEADQLALLAKTNSINVPLVYGIGNSQ-----GHSFLLL 110 (312)
T ss_dssp EEEECCSSSSEEEEEES--SSCEEEEEEEEGG---GHHHHHHHHHHHHHHHHTTSSBCCCEEEEEECS-----SEEEEEE
T ss_pred eEEeCCccceeeeEEEE--CCCeEEEEeCCcc---cHHHHHHHHHHHHHHHhhCCCCcceEEEEeecC-----CceEEEE
Confidence 46789999999999986 4667889987532 3567889999999984 36688888886543 3789999
Q ss_pred EecCCCCh
Q 040925 613 EYMENGSL 620 (833)
Q Consensus 613 e~~~~gsL 620 (833)
||+++..+
T Consensus 111 e~l~G~~~ 118 (312)
T 3jr1_A 111 EALNKSKN 118 (312)
T ss_dssp ECCCCCCC
T ss_pred EeccCCCC
Confidence 99998764
No 428
>2q83_A YTAA protein; 2635576, structural genomics, joint center for structu genomics, JCSG, protein structure initiative, PSI-2, transf; HET: ADN CIT UNL; 2.50A {Bacillus subtilis}
Probab=97.76 E-value=0.00021 Score=75.71 Aligned_cols=148 Identities=16% Similarity=0.130 Sum_probs=80.6
Q ss_pred ceeccCcceEEEEEEECCCceEEEEEEeeccCCcchhHHHHHHHHHhhcCC--CccceEeeEeecCC-CCCCceEeEEEE
Q 040925 537 NMIGQGSFGYVYKGTLGEDEMIVAVKVINLKYKGASRSFVAECEALRNIRH--RNLIKIITICSSTD-FKGTDFKAFVFE 613 (833)
Q Consensus 537 ~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h--~niv~~~~~~~~~~-~~~~~~~~lv~e 613 (833)
+.|+.|..+.||++... ++ .+++|+... ....+..|.++++.+.. -.+.+++....... ....+..++|||
T Consensus 38 ~~l~gG~~n~~~~v~~~-~~-~~vlk~~~~----~~~~~~~e~~~l~~L~~~g~~vp~~~~~~~g~~~~~~~~~~~~l~~ 111 (346)
T 2q83_A 38 DVIQGNQMALVWKVHTD-SG-AVCLKRIHR----PEKKALFSIFAQDYLAKKGMNVPGILPNKKGSLYSKHGSFLFVVYD 111 (346)
T ss_dssp EECC----CEEEEEEET-TE-EEEEEEECS----CHHHHHHHHHHHHHHHHHTCSSCCBCCCTTSCSCEEETTEEEEEEE
T ss_pred eeccccccCcEEEEEeC-CC-CEEEEecCC----CHHHHHHHHHHHHHHHHcCCCCCceeecCCCCEEEEECCEEEEEEE
Confidence 45666778899999874 34 489999864 22445566777766631 12344443110000 011346789999
Q ss_pred ecCCCChhh--------------hhccCCC----ccc----cccCCHHH-------------------------------
Q 040925 614 YMENGSLKD--------------WLHQSDD----QVE----VCKLSLIQ------------------------------- 640 (833)
Q Consensus 614 ~~~~gsL~~--------------~l~~~~~----~~~----~~~l~~~~------------------------------- 640 (833)
|++|.++.. .++.... ... ...-.|..
T Consensus 112 ~i~G~~~~~~~~~~~~~~g~~La~lH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 191 (346)
T 2q83_A 112 WIEGRPFELTVKQDLEFIMKGLADFHTASVGYQPPNGVPIFTKLGRWPNHYTKRCKQMETWKLMAEAEKEDPFSQLYLQE 191 (346)
T ss_dssp CCCCBCCCTTSHHHHHHHHHHHHHHHHHHTTCCCCTTCCCCBCTTCHHHHHHHHHHHHHHHHHHHHHCSSCHHHHHHHHH
T ss_pred eecCccCCCCCHHHHHHHHHHHHHHHHhCCCCCCCccchhcccccchHHHHHHHHHHHHHHHHHHHhccCCcHHHHHHHH
Confidence 999865420 0111000 000 00011211
Q ss_pred HHHHHHHHHHHHHHHhh----------cCCCCceeeCCCCCCeeecCCCcEEEccccccc
Q 040925 641 RVNIAIDVASAMEYLHH----------HCQPPMVHGDLKPSNVLLDHDMVAHVCDFGLAK 690 (833)
Q Consensus 641 ~~~i~~qi~~gL~~LH~----------~~~~~ivH~Dlkp~NIll~~~~~~kL~DfG~a~ 690 (833)
...+..++..++.+|+. ...+.++|+|++|.||+++.++.+.++||+.+.
T Consensus 192 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~HgD~~~~Nil~~~~~~~~lIDfe~a~ 251 (346)
T 2q83_A 192 IDGFIEDGLRIKDRLLQSTYVPWTEQLKKSPNLCHQDYGTGNTLLGENEQIWVIDLDTVS 251 (346)
T ss_dssp HHHHHHHHHHHHHHHHHTTHHHHHHHHHHSCCEECSSCSTTSEEECGGGCEEECCCTTCE
T ss_pred HHHHHHHHHHHHHHHHhchHHHHHHhccccCceecCCCCcccEEEeCCCcEEEEehhhcc
Confidence 11122234456667763 123489999999999999888899999999875
No 429
>3f7w_A Putative fructosamine-3-kinase; YP_290396.1, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI-2; 1.85A {Thermobifida fusca YX}
Probab=97.62 E-value=0.00024 Score=73.18 Aligned_cols=78 Identities=15% Similarity=0.143 Sum_probs=57.7
Q ss_pred CCccCceeccCcceEEEEEEECCCceEEEEEEeeccCCcchhHHHHHHHHHhhcC-C--CccceEeeEeecCCCCCCceE
Q 040925 532 EFSSSNMIGQGSFGYVYKGTLGEDEMIVAVKVINLKYKGASRSFVAECEALRNIR-H--RNLIKIITICSSTDFKGTDFK 608 (833)
Q Consensus 532 ~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~-h--~niv~~~~~~~~~~~~~~~~~ 608 (833)
+...++.+|.|..+.||+++.. +|+.|++|+-..........+..|++.|+.+. . --+.+++++. ..
T Consensus 16 ~v~~v~~~g~G~~~~vyrv~l~-DG~~~~vK~~~~~~~~~~~~~~~Ea~~L~~L~~~~~vpvP~v~~~~---------~~ 85 (288)
T 3f7w_A 16 EVAAVAERGHSHRWHLYRVELA-DGTPLFVKALPDDAPALDGLFRAEALGLDWLGRSFGSPVPQVAGWD---------DR 85 (288)
T ss_dssp CEEEEEEEEEETTEEEEEEEET-TSCEEEEEECCTTCCCCTTHHHHHHHHHHHHTCSTTCCSCCEEEEE---------TT
T ss_pred CeEEEEecCCCCCeEEEEEEEC-CCCEEEEEEeCCCCcchhhHHHHHHHHHHHHHhhCCCCcceEEecc---------Cc
Confidence 3455678999999999999986 78899999876444444567889999999884 2 2356666542 23
Q ss_pred eEEEEecCCCC
Q 040925 609 AFVFEYMENGS 619 (833)
Q Consensus 609 ~lv~e~~~~gs 619 (833)
++||||++++.
T Consensus 86 ~lv~e~l~~~~ 96 (288)
T 3f7w_A 86 TLAMEWVDERP 96 (288)
T ss_dssp EEEEECCCCCC
T ss_pred eEEEEeecccC
Confidence 68999998764
No 430
>2pyw_A Uncharacterized protein; 5-methylthioribose kinase, plant methionine recycling, refol transferase; HET: SR1 ADP; 1.90A {Arabidopsis thaliana}
Probab=97.48 E-value=0.00027 Score=77.19 Aligned_cols=30 Identities=27% Similarity=0.566 Sum_probs=27.0
Q ss_pred CCceeeCCCCCCeeecCCCcEEEcccccccc
Q 040925 661 PPMVHGDLKPSNVLLDHDMVAHVCDFGLAKF 691 (833)
Q Consensus 661 ~~ivH~Dlkp~NIll~~~~~~kL~DfG~a~~ 691 (833)
+.++|+|++|.||+++.++ ++++||+.+..
T Consensus 232 ~~liHGDl~~~Nil~~~~~-~~lID~e~a~~ 261 (420)
T 2pyw_A 232 QALIHGDLHTGSVMVTQDS-TQVIDPEFSFY 261 (420)
T ss_dssp CEEECSCCSGGGEEECSSC-EEECCCTTCEE
T ss_pred CeEEecCCCCCcEEEeCCC-CEEEeCccccc
Confidence 4899999999999998776 99999998874
No 431
>3dxq_A Choline/ethanolamine kinase family protein; NP_106042.1, STR genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 2.55A {Mesorhizobium loti}
Probab=97.44 E-value=0.00045 Score=71.64 Aligned_cols=74 Identities=9% Similarity=0.122 Sum_probs=46.5
Q ss_pred CccCceeccCcceEEEEEEECCCceEEEEEEeeccCCcchhHHHHHHHHHhhcCCCcc-ceEeeEeecCCCCCCceEeEE
Q 040925 533 FSSSNMIGQGSFGYVYKGTLGEDEMIVAVKVINLKYKGASRSFVAECEALRNIRHRNL-IKIITICSSTDFKGTDFKAFV 611 (833)
Q Consensus 533 y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~ni-v~~~~~~~~~~~~~~~~~~lv 611 (833)
+.-.+.|+.|....+|++ ..+++|+...... ......+|+.+++.+....+ .+++++..+ .-+++
T Consensus 20 ~~~i~~l~gG~tN~~~~~------~~~vlR~~~~~~~-~~~~r~~E~~~l~~l~~~g~~P~~~~~~~~-------~~~~v 85 (301)
T 3dxq_A 20 YTGPLERLGGLTNLVFRA------GDLCLRIPGKGTE-EYINRANEAVAAREAAKAGVSPEVLHVDPA-------TGVMV 85 (301)
T ss_dssp CCSCEEEESCSSEEEEEE------TTEEEEEECC-----CCCHHHHHHHHHHHHHTTSSCCEEEECTT-------TCCEE
T ss_pred ccceeEcCCcccccccee------eeEEEECCCCCcc-ceeCHHHHHHHHHHHHHcCCCCceEEEECC-------CCEEE
Confidence 333688999999999999 3488998764322 12234678888888752222 466655321 23689
Q ss_pred EEec-CCCCh
Q 040925 612 FEYM-ENGSL 620 (833)
Q Consensus 612 ~e~~-~~gsL 620 (833)
+||+ +|.++
T Consensus 86 ~e~i~~g~~l 95 (301)
T 3dxq_A 86 TRYIAGAQTM 95 (301)
T ss_dssp EECCTTCEEC
T ss_pred EeecCCCccC
Confidence 9999 65444
No 432
>2ppq_A HSK, HK, homoserine kinase; structural genomics, MCSG, PSI-2, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: d.144.1.6
Probab=97.43 E-value=0.00063 Score=71.29 Aligned_cols=168 Identities=12% Similarity=0.098 Sum_probs=91.3
Q ss_pred ccchHHHHHHhcCCcc-----CceeccCcceEEEEEEECCCceEEEEEEeeccCCcchhHHHHHHHHHhhcCCCc--cce
Q 040925 520 MVSYAELSKATGEFSS-----SNMIGQGSFGYVYKGTLGEDEMIVAVKVINLKYKGASRSFVAECEALRNIRHRN--LIK 592 (833)
Q Consensus 520 ~~~~~~~~~~~~~y~~-----~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~n--iv~ 592 (833)
.++.+++......|.+ .+.|+.|....+|++... ++ .+++|+.... .....+..|.++++.+.... +.+
T Consensus 6 ~~~~~~l~~~l~~~~~~~~~~~~~i~~G~~n~~~~v~~~-~g-~~vlk~~~~~--~~~~~l~~e~~~l~~L~~~g~~vP~ 81 (322)
T 2ppq_A 6 DITEDELRNFLTQYDVGSLTSYKGIAEGVENSNFLLHTT-KD-PLILTLYEKR--VEKNDLPFFLGLMQHLAAKGLSCPL 81 (322)
T ss_dssp CCCHHHHHHHHTTBCCCCEEEEEEECC---EEEEEEEES-SC-CEEEEEECC-----CCHHHHHHHHHHHHHHTTCCCCC
T ss_pred cCCHHHHHHHHHhCCCCcceEeeccCCCcccceEEEEeC-Cc-cEEEEEeCCC--CCHHHHHHHHHHHHHHHHCCCCCCc
Confidence 4566777777777765 245677888999999875 33 5889988642 23346677888888884222 334
Q ss_pred EeeEeecCC-CCCCceEeEEEEecCCCChhhh--------------hccC----CCcc-c-cccCCHHHHHH--------
Q 040925 593 IITICSSTD-FKGTDFKAFVFEYMENGSLKDW--------------LHQS----DDQV-E-VCKLSLIQRVN-------- 643 (833)
Q Consensus 593 ~~~~~~~~~-~~~~~~~~lv~e~~~~gsL~~~--------------l~~~----~~~~-~-~~~l~~~~~~~-------- 643 (833)
++....... ....+..+++|+|++|..+... ++.. .... . .....|.....
T Consensus 82 ~~~~~~g~~~~~~~g~~~~l~~~l~G~~~~~~~~~~~~~~g~~La~lH~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~ 161 (322)
T 2ppq_A 82 PLPRKDGELLGELSGRPAALISFLEGMWLRKPEAKHCREVGKALAAMHLASEGFEIKRPNALSVDGWKVLWDKSEERADE 161 (322)
T ss_dssp BCCBTTCCSCEEETTEEEEEEECCCCBCCSSCCHHHHHHHHHHHHHHHHHTTTCCCCCBCTTSHHHHHHHHHHHGGGGGG
T ss_pred ccCCCCCCEEEEECCEEEEEEEeCCCcCCCCCCHHHHHHHHHHHHHHHHHhccCCCcccCccChHHHHHHHHHHHHHHHh
Confidence 432210000 0012357899999998653210 1110 0000 0 00001111000
Q ss_pred ----HHHHHHHHHHHHhhc----CCCCceeeCCCCCCeeecCCCcEEEcccccccc
Q 040925 644 ----IAIDVASAMEYLHHH----CQPPMVHGDLKPSNVLLDHDMVAHVCDFGLAKF 691 (833)
Q Consensus 644 ----i~~qi~~gL~~LH~~----~~~~ivH~Dlkp~NIll~~~~~~kL~DfG~a~~ 691 (833)
+...+.+.+++++.. ...+++|+|+.|.||+++.+..+.++||+.+..
T Consensus 162 ~~~~l~~~l~~~~~~l~~~~~~~~~~~liHgDl~~~Nil~~~~~~~~lIDf~~a~~ 217 (322)
T 2ppq_A 162 VEKGLREEIRPEIDYLAAHWPKDLPAGVIHADLFQDNVFFLGDELSGLIDFYFACN 217 (322)
T ss_dssp TSTTHHHHHHHHHHHHHHHCCCSSCEEEECSCCCGGGEEEETTEEEEECCCTTCEE
T ss_pred hhhhhHHHHHHHHHHHHhhCcccCCcccCCCCCCccCEEEeCCceEEEecchhccC
Confidence 011234455555532 134799999999999998876668999998763
No 433
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.43 E-value=0.00018 Score=63.84 Aligned_cols=61 Identities=21% Similarity=0.343 Sum_probs=45.0
Q ss_pred EEeecCCccc-cccCccccCCCCCCeEEccCcccCCCchhhhcCCCCCceEECccCcCccccCC
Q 040925 372 YLDISSNSFH-GVIPLSLSFLKSIKELNVSSNNLSGQIPEFLKNLSVLEFLSLSYNHFEGEVPT 434 (833)
Q Consensus 372 ~L~Ls~N~l~-~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~ 434 (833)
.++.+++.|+ ..+|..+. ++|+.|+|++|+|+.+.+..|..+++|+.|+|++|+|.|.+..
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~CdC~l 73 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDCRL 73 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCSGGG
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeeccCcc
Confidence 5677777776 12333322 4688888888888877778888888899999999999887764
No 434
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.36 E-value=4.8e-05 Score=72.13 Aligned_cols=16 Identities=25% Similarity=0.457 Sum_probs=7.5
Q ss_pred CCCCCCEEEccCCcCc
Q 040925 172 NCSSLKALSLADNQFG 187 (833)
Q Consensus 172 ~l~~L~~L~Ls~N~l~ 187 (833)
.-+.|+.|+|++|+|.
T Consensus 68 ~N~~L~~L~L~~n~ig 83 (197)
T 1pgv_A 68 NSKHIEKFSLANTAIS 83 (197)
T ss_dssp TCSCCCEEECTTSCCB
T ss_pred hCCCcCEEEccCCCCC
Confidence 3344444444444444
No 435
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.30 E-value=6.6e-05 Score=71.22 Aligned_cols=67 Identities=15% Similarity=0.141 Sum_probs=30.2
Q ss_pred ccCCCCCcEEEcccCccccccCcCcc----CCCcCceEecccccCCCCCCCCcccccccCCCCCCCEEEccCC
Q 040925 116 LSNASNLELLDLSVNQFKGNVSIDFS----SLKNLLWLNLEQNNLGTGTATDLDFVTFLTNCSSLKALSLADN 184 (833)
Q Consensus 116 ~~~l~~L~~L~L~~N~i~~~~~~~~~----~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~N 184 (833)
+..-+.|+.|+|++|+|.......+. .-+.|++|+|++|.|+.... ..+...+..-+.|++|+|++|
T Consensus 66 L~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga--~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 66 ACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELL--ARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp HTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHH--HHHHHHTTTTCCCSEEECCCC
T ss_pred HhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHH--HHHHHHHhhCCceeEEECCCC
Confidence 34445555555555555433322222 23445555555555542211 122233444455666666544
No 436
>2qg7_A Ethanolamine kinase PV091845; malaria, SGC, structural genomics consortium, transferase; 2.41A {Plasmodium vivax}
Probab=97.25 E-value=0.0013 Score=72.03 Aligned_cols=75 Identities=16% Similarity=0.103 Sum_probs=49.4
Q ss_pred CceeccCcceEEEEEEECCCceEEEEEEeeccCCcchhHHHHHHHHHhhcCCCcc-ceEeeEeecCCCCCCceEeEEEEe
Q 040925 536 SNMIGQGSFGYVYKGTLGEDEMIVAVKVINLKYKGASRSFVAECEALRNIRHRNL-IKIITICSSTDFKGTDFKAFVFEY 614 (833)
Q Consensus 536 ~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~ni-v~~~~~~~~~~~~~~~~~~lv~e~ 614 (833)
.+.|+.|-...+|++...+.+..|++|+....... .-...+|..+++.+...++ .++++++ .+ ..||||
T Consensus 113 i~~lsgG~tN~~y~v~~~~~~~~~vLRi~g~~~~~-~idR~~E~~vl~~L~~~gl~P~ll~~~--~~-------G~v~e~ 182 (458)
T 2qg7_A 113 FQIINGGITNILIKVKDMSKQAKYLIRLYGPKTDE-IINREREKKISCILYNKNIAKKIYVFF--TN-------GRIEEF 182 (458)
T ss_dssp EEEECC--CEEEEEEEETTTTEEEEEEEECC-CCS-CSCHHHHHHHHHHHTTSSSBCCEEEEE--TT-------EEEEEC
T ss_pred EEEcCCCeEeEEEEEEECCCCceEEEEECCCChhh-hcCHHHHHHHHHHHHhcCCCCCEEEEe--CC-------eEEEEe
Confidence 46788888999999998644578899987533221 1223689999999964444 5677664 11 259999
Q ss_pred cCCCCh
Q 040925 615 MENGSL 620 (833)
Q Consensus 615 ~~~gsL 620 (833)
++|.++
T Consensus 183 I~G~~l 188 (458)
T 2qg7_A 183 MDGYAL 188 (458)
T ss_dssp CCSEEC
T ss_pred eCCccC
Confidence 987544
No 437
>3csv_A Aminoglycoside phosphotransferase; YP_614837.1, phosphotransferase enzyme family, structural genomics, JOIN for structural genomics, JCSG; HET: MSE; 2.15A {Silicibacter SP}
Probab=97.23 E-value=0.0011 Score=69.81 Aligned_cols=144 Identities=11% Similarity=0.040 Sum_probs=74.0
Q ss_pred ceeccCcceE-EEEEEECCCceEEEEEEeeccCCcchhHHHHHHHHHhhcC-C-CccceEeeEeecCCCCCCceEeEEEE
Q 040925 537 NMIGQGSFGY-VYKGTLGEDEMIVAVKVINLKYKGASRSFVAECEALRNIR-H-RNLIKIITICSSTDFKGTDFKAFVFE 613 (833)
Q Consensus 537 ~~lg~G~~g~-Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~-h-~niv~~~~~~~~~~~~~~~~~~lv~e 613 (833)
+.|+.|.... +|+.... ++..+++|...... ...+..|+++++.+. + -.+.+++.+... .+ +++||
T Consensus 24 ~~l~gg~s~~~~~r~~~~-~~~~~vlk~~~~~~---~~~~~~e~~~l~~L~~~g~~vP~v~~~d~~-----~g--~ll~e 92 (333)
T 3csv_A 24 TPLAGDASSRRYQRLRSP-TGAKAVLMDWSPEE---GGDTQPFVDLAQYLRNLDISAPEIYAEEHA-----RG--LLLIE 92 (333)
T ss_dssp CC--------CCEEEECT-TCCEEEEEECCTTT---TCCSHHHHHHHHHHHHTTCBCCCEEEEETT-----TT--EEEEC
T ss_pred eECCCCCCCceEEEEEcC-CCCeEEEEECCCCC---CccccHHHHHHHHHHhCCCCCCceeeecCC-----CC--EEEEe
Confidence 4566565554 6777642 35667777654321 134566888888774 2 235667665321 12 68999
Q ss_pred ecCCCChhhhhccCCCc--------------------cccccCCHHHHH-------H-------------HHHHHHHHHH
Q 040925 614 YMENGSLKDWLHQSDDQ--------------------VEVCKLSLIQRV-------N-------------IAIDVASAME 653 (833)
Q Consensus 614 ~~~~gsL~~~l~~~~~~--------------------~~~~~l~~~~~~-------~-------------i~~qi~~gL~ 653 (833)
++.+.++.+.+...... .....++..... . ....+...+.
T Consensus 93 ~l~~~~l~~~l~~~~~~~~~~~~~~~~~La~lH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~ 172 (333)
T 3csv_A 93 DLGDALFTEVINNDPAQEMPLYRAAVDLLIHLHDAQTPELARLDPETLSEMTRLAFSEYRYAILGDAAEDNRKRFEHRFA 172 (333)
T ss_dssp CCCSCBHHHHHHHCGGGHHHHHHHHHHHHHHHHTSCCCCCCBCCHHHHHHTTTHHHHTHHHHHHSSCCHHHHHHHHHHHH
T ss_pred eCCCcchHHHhcCCCccHHHHHHHHHHHHHHHhcCCCccCCccCHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Confidence 99776666544322100 000011111000 0 0001112222
Q ss_pred HHh---hcCCCCceeeCCCCCCeeecCC----CcEEEcccccccc
Q 040925 654 YLH---HHCQPPMVHGDLKPSNVLLDHD----MVAHVCDFGLAKF 691 (833)
Q Consensus 654 ~LH---~~~~~~ivH~Dlkp~NIll~~~----~~~kL~DfG~a~~ 691 (833)
.+. ....+.++|||+.+.||+++.+ +.+.++||+.+..
T Consensus 173 ~l~~~~~~~~~~lvHgD~~~~Nil~~~~~~~~~~~~lIDf~~a~~ 217 (333)
T 3csv_A 173 QILSAQLEGDMVFVHRDFHAQNLLWLPEREGLARVGVIDFQDAKL 217 (333)
T ss_dssp HHHHHHCCSCCEEECSCCSGGGEEECTTSCGGGGEEECCCTTCEE
T ss_pred HHHHhcccCCCeeEeCCcCcccEEeccCcCCCCCeEEEeCCCcCc
Confidence 221 1123479999999999999875 6899999998863
No 438
>1zyl_A Hypothetical protein YIHE; putative protein kinase, structural genomics, PSI, protein structure initiative; 2.80A {Escherichia coli} SCOP: d.144.1.6
Probab=97.11 E-value=0.0031 Score=66.15 Aligned_cols=99 Identities=12% Similarity=0.071 Sum_probs=59.5
Q ss_pred CCccchHHHHHHhcCCcc-----CceeccCcceEEEEEEECCCceEEEEEEeeccCCcchhHHHHHHHHHhhcCCC--cc
Q 040925 518 FPMVSYAELSKATGEFSS-----SNMIGQGSFGYVYKGTLGEDEMIVAVKVINLKYKGASRSFVAECEALRNIRHR--NL 590 (833)
Q Consensus 518 ~~~~~~~~~~~~~~~y~~-----~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~--ni 590 (833)
+..++.+.+......|.+ .+.++ |....||++... +|+.+++|...... .....+..|.++++.+... .+
T Consensus 8 ~~~l~~~~i~~~l~~~g~~~~~~~~~l~-g~~n~~y~v~~~-~g~~~vlK~~~~~~-~~~~~~~~E~~~~~~L~~~g~~v 84 (328)
T 1zyl_A 8 FQTLHPDTIMDALFEHGIRVDSGLTPLN-SYENRVYQFQDE-DRRRFVVKFYRPER-WTADQILEEHQFALQLVNDEVPV 84 (328)
T ss_dssp CCCCCHHHHHHHHHHTTCCCCSCCEEEC-CSSSEEEEECCT-TCCCEEEEEECTTT-SCHHHHHHHHHHHHHHHHTTCSB
T ss_pred CCCCCHHHHHHHHHHcCCCCCceEEeec-CcccceEEEEcC-CCCEEEEEEcCCCC-CCHHHHHHHHHHHHHHHHcCCee
Confidence 344555666655555533 24566 778899998764 46678999986331 2345677899988888522 24
Q ss_pred ceEeeEeecCC-CCCCceEeEEEEecCCCCh
Q 040925 591 IKIITICSSTD-FKGTDFKAFVFEYMENGSL 620 (833)
Q Consensus 591 v~~~~~~~~~~-~~~~~~~~lv~e~~~~gsL 620 (833)
++++.. .... ....+..++||||++|.++
T Consensus 85 p~~~~~-~g~~~~~~~g~~~~l~~~i~G~~~ 114 (328)
T 1zyl_A 85 AAPVAF-NGQTLLNHQGFYFAVFPSVGGRQF 114 (328)
T ss_dssp CCCCCB-TTBSCEEETTEEEEEEECCCCEEC
T ss_pred cceeec-CCcEEEEECCEEEEEEEecCCCCC
Confidence 444443 1100 0113466889999987543
No 439
>1nw1_A Choline kinase (49.2 KD); phospholipid synthesis, protein kinase fold, transferase; 2.02A {Caenorhabditis elegans} SCOP: d.144.1.8
Probab=97.07 E-value=0.0013 Score=71.77 Aligned_cols=74 Identities=20% Similarity=0.167 Sum_probs=50.5
Q ss_pred CceeccCcceEEEEEEECC-------CceEEEEEEeeccCCcchhHHHHHHHHHhhcC-CCccceEeeEeecCCCCCCce
Q 040925 536 SNMIGQGSFGYVYKGTLGE-------DEMIVAVKVINLKYKGASRSFVAECEALRNIR-HRNLIKIITICSSTDFKGTDF 607 (833)
Q Consensus 536 ~~~lg~G~~g~Vy~~~~~~-------~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~-h~niv~~~~~~~~~~~~~~~~ 607 (833)
.+.|+.|....||++.... .+..|++|+.... .....+..|..+++.+. +.-..++++.+. +
T Consensus 78 v~~l~gG~tN~~y~v~~~~~~~~~~~~~~~~vlRi~~~~--~~~~~li~E~~~l~~L~~~g~~P~l~~~~~--~------ 147 (429)
T 1nw1_A 78 ISRIKGGMSNMLFLCRLSEVYPPIRNEPNKVLLRVYFNP--ETESHLVAESVIFTLLSERHLGPKLYGIFS--G------ 147 (429)
T ss_dssp EEEECCCTTEEEEEEEECTTSCCSSSCCSEEEEEEECSC--CCHHHHHHHHHHHHHHHHTTSSSCEEEEET--T------
T ss_pred EEEeCCCcccceEEEEeCCCccccCCCCceEEEEEeCCC--CcHHHHHHHHHHHHHHHhCCCCCcEEEEeC--C------
Confidence 3578888899999998753 2568899988421 12255668999999885 333466776531 1
Q ss_pred EeEEEEecCCCCh
Q 040925 608 KAFVFEYMENGSL 620 (833)
Q Consensus 608 ~~lv~e~~~~gsL 620 (833)
.+||||++|.++
T Consensus 148 -g~v~e~l~G~~l 159 (429)
T 1nw1_A 148 -GRLEEYIPSRPL 159 (429)
T ss_dssp -EEEECCCCEEEC
T ss_pred -CEEEEEeCCccc
Confidence 389999986444
No 440
>3feg_A Choline/ethanolamine kinase; non-protein kinase, choline kinase, structural genomics CONS SGC, hemicholinium-3, phosphorylation; HET: HC7 ADP AMP; 1.30A {Homo sapiens} PDB: 3lq3_A* 2ig7_A*
Probab=97.03 E-value=0.0013 Score=70.03 Aligned_cols=146 Identities=14% Similarity=0.160 Sum_probs=84.9
Q ss_pred CceeccCcceEEEEEEECC-------CceEEEEEEeeccCCcchhHHHHHHHHHhhcC-CCccceEeeEeecCCCCCCce
Q 040925 536 SNMIGQGSFGYVYKGTLGE-------DEMIVAVKVINLKYKGASRSFVAECEALRNIR-HRNLIKIITICSSTDFKGTDF 607 (833)
Q Consensus 536 ~~~lg~G~~g~Vy~~~~~~-------~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~-h~niv~~~~~~~~~~~~~~~~ 607 (833)
++.+..|....+|++.... +++.|++|+.... ......+.+|.++++.+. +.-..++++++. +
T Consensus 55 v~~lsGG~TN~~y~v~~~~~~~~~~~~~~~~vlR~~g~~-~~~~~~~~rE~~vl~~L~~~gv~P~ll~~~~--~------ 125 (379)
T 3feg_A 55 VYPVSGGLSNLLFRCSLPDHLPSVGEEPREVLLRLYGAI-LQGVDSLVLESVMFAILAERSLGPQLYGVFP--E------ 125 (379)
T ss_dssp CEEC-----CCEEEEECCTTSCCCSSCCSEEEEEECC----CCHHHHHHHHHHHHHHHHTTSSCCEEEEET--T------
T ss_pred EEEcCCcccccEEEEEeCCCccccCCCCCeEEEEECCCc-cchHHHHHHHHHHHHHHHhcCCCCeEEEEcC--C------
Confidence 3567778888999998752 3568999986332 223456779999999884 333466776642 1
Q ss_pred EeEEEEecCCCChhhh-h----------------ccCCCccccccC-CHHHHHHHHHHHHH-------------------
Q 040925 608 KAFVFEYMENGSLKDW-L----------------HQSDDQVEVCKL-SLIQRVNIAIDVAS------------------- 650 (833)
Q Consensus 608 ~~lv~e~~~~gsL~~~-l----------------~~~~~~~~~~~l-~~~~~~~i~~qi~~------------------- 650 (833)
.+||||++|.++..- + +........... -+.++.++..++..
T Consensus 126 -g~v~e~i~G~~l~~~~l~~p~~~~~ia~~La~LH~~~~~~~~~~~~l~~~i~~w~~~~~~~~~~~~~~~~~~~~~~l~~ 204 (379)
T 3feg_A 126 -GRLEQYIPSRPLKTQELREPVLSAAIATKMAQFHGMEMPFTKEPHWLFGTMERYLKQIQDLPPTGLPEMNLLEMYSLKD 204 (379)
T ss_dssp -EEEEECCSEEECCGGGGGCHHHHHHHHHHHHHHHTCCCSSCCSCCHHHHHHHHHHHHHHHCCCCSCCSCCHHHHTTHHH
T ss_pred -ccEEEEecCccCChhHhCCHHHHHHHHHHHHHHhCCCCCCCCCcccHHHHHHHHHHHHHhccCcccchhhhhhhHHHHH
Confidence 289999998655321 0 011000000011 24555555544422
Q ss_pred HHHHHhh----c-CCCCceeeCCCCCCeeecCC----CcEEEcccccccc
Q 040925 651 AMEYLHH----H-CQPPMVHGDLKPSNVLLDHD----MVAHVCDFGLAKF 691 (833)
Q Consensus 651 gL~~LH~----~-~~~~ivH~Dlkp~NIll~~~----~~~kL~DfG~a~~ 691 (833)
.+..|.+ . ....++|+|+.+.||+++.+ +.+.++||..|..
T Consensus 205 ~~~~L~~~L~~~~~~~~~~H~D~~~~Nil~~~~~~~~~~~~~IDwE~a~~ 254 (379)
T 3feg_A 205 EMGNLRKLLESTPSPVVFCHNDIQEGNILLLSEPENADSLMLVDFEYSSY 254 (379)
T ss_dssp HHHHHHHHHHTSCCCEEEECSCCCGGGEEEESCC---CCEEECCCTTCEE
T ss_pred HHHHHHHHHhhcCCCcEEEcCCCCCCeEEEcCCCCccCcEEEEecccCCc
Confidence 2333321 1 12368999999999999876 7899999998864
No 441
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.02 E-value=0.001 Score=58.91 Aligned_cols=55 Identities=16% Similarity=0.296 Sum_probs=24.7
Q ss_pred EEEccCCccc-ccCCccCCCCCCCCEEEcCCCcccccCCccccCCCCCcEEECCCccc
Q 040925 27 VIRIMGNSLG-GKIPTTLGLLRNLVSLNVAENKFSGMFPRSICNISSLELIQLALNRF 83 (833)
Q Consensus 27 ~L~l~~n~l~-~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l 83 (833)
.++.+++.++ ..+|..+. ++|++|+|++|+|+.+.++.|..+++|+.|+|++|.+
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 4555555552 13443222 2444555555555444444444444444444444443
No 442
>3c5i_A Choline kinase; choline, kinase, malaria, transferase, structural genomics, structural genomics consortium; 2.20A {Plasmodium knowlesi} PDB: 3fi8_A*
Probab=96.78 E-value=0.0029 Score=67.62 Aligned_cols=75 Identities=12% Similarity=0.167 Sum_probs=45.7
Q ss_pred CceeccCcceEEEEEEECCC--------ceEEEEEEeeccCCcchhHHHHHHHHHhhcCCCc-cceEeeEeecCCCCCCc
Q 040925 536 SNMIGQGSFGYVYKGTLGED--------EMIVAVKVINLKYKGASRSFVAECEALRNIRHRN-LIKIITICSSTDFKGTD 606 (833)
Q Consensus 536 ~~~lg~G~~g~Vy~~~~~~~--------~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~n-iv~~~~~~~~~~~~~~~ 606 (833)
.+.++.|....+|++...+. +..|++|+...... .......|.++++.+...+ +.++++.. .
T Consensus 38 ~~~l~~G~~N~~y~v~~~~~~~~~~~~~~~~~vlRi~~~~~~-~~~~~~~E~~~l~~L~~~g~~P~~~~~~--~------ 108 (369)
T 3c5i_A 38 VKQILSGLTNQLFEVGLKEETANNYNSIRTRVLFRIYGKHVD-ELYNTISEFEVYKTMSKYKIAPQLLNTF--N------ 108 (369)
T ss_dssp EEEC----CCEEEEEEECHHHHTTCTTSCCEEEEEECCTTGG-GTSCHHHHHHHHHHHHHTTSSCCEEEEE--T------
T ss_pred EEEeCCcccceEEEEEeCCCCcccccCCCceEEEEecCCCcc-ceecHHHHHHHHHHHHhcCCCCceEEec--C------
Confidence 35677888889999987531 26788998753321 1223468899998885333 45666542 1
Q ss_pred eEeEEEEecCCCCh
Q 040925 607 FKAFVFEYMENGSL 620 (833)
Q Consensus 607 ~~~lv~e~~~~gsL 620 (833)
-++||||++|.++
T Consensus 109 -~~~v~e~i~G~~l 121 (369)
T 3c5i_A 109 -GGRIEEWLYGDPL 121 (369)
T ss_dssp -TEEEEECCCSEEC
T ss_pred -CcEEEEEecCCcC
Confidence 2589999987543
No 443
>3i1a_A Spectinomycin phosphotransferase; protein kinase, aminoglycoside phosphotransferase, antibiotic resistance; HET: MES PG4; 1.70A {Legionella pneumophila} PDB: 3i0q_A* 3i0o_A* 3q2m_A*
Probab=96.55 E-value=0.0092 Score=62.74 Aligned_cols=31 Identities=19% Similarity=0.352 Sum_probs=27.6
Q ss_pred CCceeeCCCCCCeeecCCCcEEEcccccccc
Q 040925 661 PPMVHGDLKPSNVLLDHDMVAHVCDFGLAKF 691 (833)
Q Consensus 661 ~~ivH~Dlkp~NIll~~~~~~kL~DfG~a~~ 691 (833)
..++|+|+.|.||+++.++.+.++||+.+..
T Consensus 206 ~~~~HgD~~~~N~l~~~~~~~~~iD~e~~~~ 236 (339)
T 3i1a_A 206 YVLCHSDIHAGNVLVGNEESIYIIDWDEPML 236 (339)
T ss_dssp CEEECSCCCGGGEEECGGGCEEECCCSSCEE
T ss_pred ceeEeCCCCcCCEEEeCCCeEEEEECCCCee
Confidence 4799999999999999888899999987763
No 444
>3f2s_A CK, chetk-alpha, choline kinase alpha; non-protein kinase, structural genomics consortium, SGC, hemicholinium-3, alternative splicing, cytoplasm; HET: ADP HC6; 1.70A {Homo sapiens} PDB: 3f2r_A* 3g15_A* 2i7q_A 2cko_A 2ckp_A* 2ckq_A*
Probab=96.13 E-value=0.014 Score=62.14 Aligned_cols=146 Identities=14% Similarity=0.143 Sum_probs=83.4
Q ss_pred ceeccCcceEEEEEEECC-------CceEEEEEEeeccCCc------------------chhHHHHHHHHHhhcC-CCcc
Q 040925 537 NMIGQGSFGYVYKGTLGE-------DEMIVAVKVINLKYKG------------------ASRSFVAECEALRNIR-HRNL 590 (833)
Q Consensus 537 ~~lg~G~~g~Vy~~~~~~-------~~~~vavK~~~~~~~~------------------~~~~~~~E~~~l~~l~-h~ni 590 (833)
+.|..|-...+|++.... .+..|.+++.-..... ..+....|..+++.+. +--.
T Consensus 58 ~~l~gGlTN~~~~v~~~~~~~~~~~~~~~~llRi~G~~te~~~~~~~~~~~idR~~~~~~~~~~~~E~~~l~~L~~~Gi~ 137 (401)
T 3f2s_A 58 SVIRGGLSNMLFQCSLPDTTATLGDEPRKVLLRLYGAILQMRSCNKEGSEQAQKENEFQGAEAMVLESVMFAILAERSLG 137 (401)
T ss_dssp EEEECSSEEEEEEEECCTTCCCSSSCCSEEEEEEEEC-----------------------CHHHHHHHHHHHHHHHTTSS
T ss_pred EEcCCCccCceEEEEeCCCcccccCCCccEEEEeCCCCcccccccccccchhhhhhhhccchhhHHHHHHHHHHHhcCCC
Confidence 566678888999998753 1467889887543221 0112335888888885 4445
Q ss_pred ceEeeEeecCCCCCCceEeEEEEecCCCChhh--hh---------------ccCCCccccccC-CHHHHHHHHHHHH---
Q 040925 591 IKIITICSSTDFKGTDFKAFVFEYMENGSLKD--WL---------------HQSDDQVEVCKL-SLIQRVNIAIDVA--- 649 (833)
Q Consensus 591 v~~~~~~~~~~~~~~~~~~lv~e~~~~gsL~~--~l---------------~~~~~~~~~~~l-~~~~~~~i~~qi~--- 649 (833)
.++++++. + .+|+||++|-+|.. +- +.........+. .+.++.++..++.
T Consensus 138 Pkl~~~~~--~-------G~i~efI~G~~L~~~dl~~p~~~~~iA~~L~~LH~~~~~~~~~~~~l~~~i~~~~~~l~~~~ 208 (401)
T 3f2s_A 138 PKLYGIFP--Q-------GRLEQFIPSRRLDTEELSLPDISAEIAEKMATFHGMKMPFNKEPKWLFGTMEKYLKEVLRIK 208 (401)
T ss_dssp CCEEEEET--T-------EEEEECCCEEECCGGGGGSHHHHHHHHHHHHHHHTCCCSSCCSCCHHHHHHHHHHHHHHHCC
T ss_pred CeEEEEeC--C-------CeEEEecCCccCCHHHHhhHHHHHHHHHHHHHHhCCCCCCCCCcchHHHHHHHHHHHHHhcc
Confidence 67777631 1 28999999755422 10 001000000011 1234444443321
Q ss_pred -------------------HHHHH----Hhhc-CCCCceeeCCCCCCeeecCC------CcEEEcccccccc
Q 040925 650 -------------------SAMEY----LHHH-CQPPMVHGDLKPSNVLLDHD------MVAHVCDFGLAKF 691 (833)
Q Consensus 650 -------------------~gL~~----LH~~-~~~~ivH~Dlkp~NIll~~~------~~~kL~DfG~a~~ 691 (833)
.-+.. +... ....++|+|+.+.||+++.+ +.+.++||..|..
T Consensus 209 ~~~~~~~~~~~~~~~~~l~~e~~~l~~~l~~~~~~~v~~H~Dl~~~Nil~~~~~~~~~~~~~~lID~E~a~~ 280 (401)
T 3f2s_A 209 FTEESRIKKLHKLLSYNLPLELENLRSLLESTPSPVVFCHNDCQEGNILLLEGRENSEKQKLMLIDFEYSSY 280 (401)
T ss_dssp CCSHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCCEEEECSCCCGGGEEEETTGGGCSSSCEEECCCTTCEE
T ss_pred CcchhhhhhhhhhhhHHHHHHHHHHHHHHhhcCCCeeEEeccCCcccEEEcCCcccCcccceEEEeeccCCc
Confidence 11222 2221 13368999999999999877 7899999998863
No 445
>3mes_A Choline kinase; malaria, structural genomics, structural genomics consortium, SGC, transferase; HET: ADP DME PT3; 2.35A {Cryptosporidium parvum}
Probab=95.84 E-value=0.017 Score=62.18 Aligned_cols=145 Identities=11% Similarity=0.112 Sum_probs=86.0
Q ss_pred CceeccCcceEEEEEEECCC-------ceEEEEEEeeccCCcchhHHHHHHHHHhhcC-CCccceEeeEeecCCCCCCce
Q 040925 536 SNMIGQGSFGYVYKGTLGED-------EMIVAVKVINLKYKGASRSFVAECEALRNIR-HRNLIKIITICSSTDFKGTDF 607 (833)
Q Consensus 536 ~~~lg~G~~g~Vy~~~~~~~-------~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~-h~niv~~~~~~~~~~~~~~~~ 607 (833)
++.+..|-...+|++..... ++.|++|+...... ..-...+|.++++.+. +.-..++++.+ .
T Consensus 75 v~~lsGG~TN~~y~v~~~~~~~~~~~~~~~~vlRi~g~~t~-~~idR~~E~~~l~~L~~~gi~P~l~~~~--~------- 144 (424)
T 3mes_A 75 VKQIFSGLTNQLFVVSIVNESMSLSLKHPRILFRIYGKHVG-KFYDSKVELDVFRYLSNINIAPNIIADF--P------- 144 (424)
T ss_dssp EEEECCCSSSEEEEEEECCC-----CCCSEEEEEECCCCC--CCCCHHHHHHHHHHHHHTTSSCCEEEEE--T-------
T ss_pred EEEcCCCcccceEEEEeCCCcccccCCCCeEEEEECCCCcc-hhcCHHHHHHHHHHHHhcCCCCCEEEEc--C-------
Confidence 35677788889999987521 57799998754322 2224568999998885 33345666542 1
Q ss_pred EeEEEEecCCCChhhh-hc----------------cCCC-----cc--ccccCCHHHHHHHHHHH---------------
Q 040925 608 KAFVFEYMENGSLKDW-LH----------------QSDD-----QV--EVCKLSLIQRVNIAIDV--------------- 648 (833)
Q Consensus 608 ~~lv~e~~~~gsL~~~-l~----------------~~~~-----~~--~~~~l~~~~~~~i~~qi--------------- 648 (833)
-+.||||++|.++..- +. .... .. ...+..+.++.++..++
T Consensus 145 ~~~I~efI~G~~l~~~~l~~~~~~~~ia~~La~LH~~~~~~~~L~~~~~~~p~~~~~i~~w~~~~~~~~~~~~~~~~~~~ 224 (424)
T 3mes_A 145 EGRIEEFIDGEPLTTKQLQLTHICVEVAKNMGSLHIINSKRADFPSRFDKEPILFKRIYLWREEAKIQVSKNNFQIDKEL 224 (424)
T ss_dssp TEEEEECCCSEECCTGGGGSHHHHHHHHHHHHHHHTHHHHCTTSCTTSCCSCCHHHHHHHHHHHHHHHHHTCC--CCHHH
T ss_pred CCEEEEEeCCccCChhhcCCHHHHHHHHHHHHHHhcCchhhccCccccCCCCcHHHHHHHHHHHHHHhhcccchhhcccc
Confidence 2689999998654210 00 0000 00 00011244444444332
Q ss_pred ----HHHHHHHhhc---------------------CCCCceeeCCCCCCeeecCCCcEEEcccccccc
Q 040925 649 ----ASAMEYLHHH---------------------CQPPMVHGDLKPSNVLLDHDMVAHVCDFGLAKF 691 (833)
Q Consensus 649 ----~~gL~~LH~~---------------------~~~~ivH~Dlkp~NIll~~~~~~kL~DfG~a~~ 691 (833)
...+.+|.+. ....++|+|+.+.||+ +.++.+.++||..|..
T Consensus 225 ~~~l~~e~~~L~~~l~~~~~~~~~r~~~~~~~~~~~~~~~~H~D~~~~N~l-~~~~~~~~IDwe~a~~ 291 (424)
T 3mes_A 225 YSKILEEIDQLEELIMGGEKFSMERALELKLYSPAFSLVFAHNDLQENNLL-QTQNNIRMIDYEYSAI 291 (424)
T ss_dssp HHHHHHHHHHHHHHHHTSSCCCHHHHHHHHTTCGGGCEEEECSCCCGGGEE-ECSSCEEECCCTTCEE
T ss_pred HHHHHHHHHHHHHHHhhhcccccccccccccccCCCCceEECCCCCcccee-cCCCcEEEEecccCCc
Confidence 2223333211 1236899999999999 7888999999998864
No 446
>2yle_A Protein spire homolog 1; actin-binding protein, actin polymerization; 1.80A {Homo sapiens} PDB: 2ylf_A 3r7g_A 3rbw_A
Probab=94.75 E-value=0.059 Score=51.20 Aligned_cols=104 Identities=15% Similarity=0.094 Sum_probs=62.5
Q ss_pred ChhhhhccCCCccccccCCHHHHHHHHHHHHHHHHHHhhcCCCCceeeCCCCCCeeecCCCcEEEcccccccccCccccc
Q 040925 619 SLKDWLHQSDDQVEVCKLSLIQRVNIAIDVASAMEYLHHHCQPPMVHGDLKPSNVLLDHDMVAHVCDFGLAKFLSDHQLD 698 (833)
Q Consensus 619 sL~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~gL~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kL~DfG~a~~~~~~~~~ 698 (833)
||.+++...+. ++++.++|.++.|.+.+|.-+-.+. .-..+=+.|..|++..+|.|...+ +.+.
T Consensus 34 SL~eIL~~~~~-----PlsEEqaWALc~Qc~~~L~~~~~~~--~~~~~i~~~~~i~l~~dG~V~f~~-~~s~-------- 97 (229)
T 2yle_A 34 SLEEILRLYNQ-----PINEEQAWAVCYQCCGSLRAAARRR--QPRHRVRSAAQIRVWRDGAVTLAP-AADD-------- 97 (229)
T ss_dssp EHHHHHHHHTS-----CCCHHHHHHHHHHHHHHHHHHHHTT--CCCCCCCSGGGEEEETTSCEEECC-C-----------
T ss_pred cHHHHHHHcCC-----CcCHHHHHHHHHHHHHHHHhhhhcc--cCCceecCCcceEEecCCceeccc-cccc--------
Confidence 78999987653 7999999999999999988772210 111223457899999999988764 2111
Q ss_pred ccccCCCccccccccccccCccccCCCCCCcccccccCCcCCCccccCCccHHHHHHHhCCCc
Q 040925 699 TAVKTPSSSIGLKGTVGYVAPEYGMGSEASMTGDIFTGRRPIDAVFNEGHSLHEFAKTALPEK 761 (833)
Q Consensus 699 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~s~~~~~~~~~~~g~~l~~~~~~~~p~~ 761 (833)
.....+.|||... ...+.+.=|+| .|+++|..+.-.++..
T Consensus 98 ------------~~~~~~~~pe~~~-~~~te~~~Iys----------LG~tLY~ALDygL~e~ 137 (229)
T 2yle_A 98 ------------AGEPPPVAGKLGY-SQCMETEVIES----------LGIIIYKALDYGLKEN 137 (229)
T ss_dssp ---------------------CCSS-SSSCHHHHHHH----------HHHHHHHHHTTTCCTT
T ss_pred ------------ccccCCCChhhcc-ccchHHHHHHH----------HHHHHHHHhhcCCCcc
Confidence 0223466888753 23344555555 7777777655555544
No 447
>3g15_A CK, chetk-alpha, choline kinase alpha; non-protein kinase, structural genomics CONS SGC, hemicholinium-3, transferase; HET: ADP HC6; 1.70A {Homo sapiens} PDB: 3f2r_A* 2i7q_A 2cko_A 2ckp_A* 2ckq_A*
Probab=94.46 E-value=0.094 Score=56.37 Aligned_cols=29 Identities=24% Similarity=0.479 Sum_probs=24.8
Q ss_pred ceeeCCCCCCeee------cCCCcEEEcccccccc
Q 040925 663 MVHGDLKPSNVLL------DHDMVAHVCDFGLAKF 691 (833)
Q Consensus 663 ivH~Dlkp~NIll------~~~~~~kL~DfG~a~~ 691 (833)
++|+|+.+.||++ +++..++++||..|..
T Consensus 246 fcHnDl~~gNil~~~~~~~~~~~~l~vIDwEya~~ 280 (401)
T 3g15_A 246 FCHNDCQEGNILLLEGRENSEKQKLMLIDFEYSSY 280 (401)
T ss_dssp EECSCCCGGGEEEETTGGGCSSCCEEECCCTTCEE
T ss_pred eEEecCCCCeEEEecCcccCcCCeEEEechHhccC
Confidence 5799999999999 4456899999998864
No 448
>4ann_A ESSB; membrane protein, membrane secretion, ESS type VII secretion virulence; 1.05A {Staphylococcus aureus subsp}
Probab=83.01 E-value=2 Score=40.68 Aligned_cols=51 Identities=12% Similarity=0.165 Sum_probs=44.2
Q ss_pred cCCHHHHHHHHHHHHHHHHHHhhcCCCCceeeCCCCCCeeecCCCcEEEccccccc
Q 040925 635 KLSLIQRVNIAIDVASAMEYLHHHCQPPMVHGDLKPSNVLLDHDMVAHVCDFGLAK 690 (833)
Q Consensus 635 ~l~~~~~~~i~~qi~~gL~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kL~DfG~a~ 690 (833)
..+...+++++.+|+.-..++++. +|--+.|+||+++.++.+++.-.|+..
T Consensus 77 ~~~~~eKlr~l~ni~~l~~~~~~r-----~tf~L~P~NL~f~~~~~p~i~~RGik~ 127 (215)
T 4ann_A 77 SFTKNEKLRYLLNIKNLEEVNRTR-----YTFVLAPDELFFTRDGLPIAKTRGLQN 127 (215)
T ss_dssp GSCHHHHHHHHHHGGGGGGGGGSS-----EECCCSGGGEEECTTSCEEESCCEETT
T ss_pred hcCHHHHHHHHHHHHHHHHHhcCc-----eEEEEecceEEEcCCCCEEEEEccCcc
Confidence 578899999999999988766655 888999999999999999998887654
No 449
>4ano_A ESSB; membrane protein, membrane secretion, ESS type V secretion S; HET: MSE; 1.70A {Geobacillus thermodenitrificans ng80-2organism_taxid}
Probab=82.62 E-value=3.2 Score=39.51 Aligned_cols=51 Identities=18% Similarity=0.307 Sum_probs=42.8
Q ss_pred cCCHHHHHHHHHHHHHHHH-HHhhcCCCCceeeCCCCCCeeecCCCcEEEccccccc
Q 040925 635 KLSLIQRVNIAIDVASAME-YLHHHCQPPMVHGDLKPSNVLLDHDMVAHVCDFGLAK 690 (833)
Q Consensus 635 ~l~~~~~~~i~~qi~~gL~-~LH~~~~~~ivH~Dlkp~NIll~~~~~~kL~DfG~a~ 690 (833)
..+...+++++.+++.-.. +++++ +|--+.|+||+++.++.+++.-.|+-.
T Consensus 81 ~~~~~eKlrll~nl~~L~~~~~~~r-----~tf~l~P~NL~f~~~~~p~i~hRGi~~ 132 (219)
T 4ano_A 81 KTTLLSRIRAAIHLVSKVKHHSARR-----LIFIVCPENLMFNRALEPFFLHVGVKE 132 (219)
T ss_dssp TSCHHHHHHHHHHHHHHHSSCCSSS-----EECCCCGGGEEECTTCCEEESCCEETT
T ss_pred hcCHHHHHHHHHHHHHHHHHhhhCc-----eeEEEeCceEEEeCCCcEEEEEcCCcc
Confidence 5788899999999888776 56544 888999999999999999998877643
No 450
>3cxl_A N-chimerin; SH2, RHO-GAP, structural genomics consortium, SGC, gtpas activation, metal-binding, phorbol-ester binding, SH2 domai finger; 2.60A {Homo sapiens} PDB: 1xa6_A
Probab=81.48 E-value=0.16 Score=55.51 Aligned_cols=63 Identities=13% Similarity=0.034 Sum_probs=18.7
Q ss_pred ccCceeccCcceEEEEEEECCCceEEEE------EEeeccC--CcchhHHHHHHHHHhhcCCCccceEeeEeec
Q 040925 534 SSSNMIGQGSFGYVYKGTLGEDEMIVAV------KVINLKY--KGASRSFVAECEALRNIRHRNLIKIITICSS 599 (833)
Q Consensus 534 ~~~~~lg~G~~g~Vy~~~~~~~~~~vav------K~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~ 599 (833)
.+.+.+| ||.||+|.+.....+||| |..+... .+....+.+|..+++..+|||+++.+++...
T Consensus 145 ~l~~~lG---fG~v~~g~~~~~~~~Vav~~~~~~K~~~~~~~~~e~~~~~~rea~l~~~~~H~niv~~h~f~~~ 215 (463)
T 3cxl_A 145 PIYEHVG---YTTLNREPAYKKHMPVLKETHDERDSTGQDGVSEKRLTSLVRRATLKENEQIPKYEKIHNFKVH 215 (463)
T ss_dssp CSTTTSS---BCCC---------CCBGGGC-----------------------------------CBCCCEEEE
T ss_pred cccccCC---chhhhcccccccCCchhhhhccCccccccccccccccccccccccccccccccccCCCcceEEe
Confidence 3456676 999999999765568888 7665322 2233568889999999999999999887543
No 451
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=70.05 E-value=1.4 Score=29.62 Aligned_cols=7 Identities=14% Similarity=0.662 Sum_probs=2.8
Q ss_pred HHHhhhc
Q 040925 497 VYARKRR 503 (833)
Q Consensus 497 ~~~~rrr 503 (833)
+|.|||+
T Consensus 33 ~~~RRR~ 39 (44)
T 2jwa_A 33 ILIKRRQ 39 (44)
T ss_dssp HHHHHHC
T ss_pred hheehhh
Confidence 3334443
No 452
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=68.19 E-value=2.3 Score=28.60 Aligned_cols=7 Identities=43% Similarity=1.009 Sum_probs=2.7
Q ss_pred HHHhhhc
Q 040925 497 VYARKRR 503 (833)
Q Consensus 497 ~~~~rrr 503 (833)
++.++|+
T Consensus 32 ~~~RRRr 38 (44)
T 2l2t_A 32 VYVRRKS 38 (44)
T ss_dssp HHHHTTC
T ss_pred HHhhhhh
Confidence 3334433
No 453
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=66.49 E-value=12 Score=30.64 Aligned_cols=17 Identities=18% Similarity=0.358 Sum_probs=6.6
Q ss_pred cCCccccCCCCCcEEEC
Q 040925 62 MFPRSICNISSLELIQL 78 (833)
Q Consensus 62 ~~~~~~~~l~~L~~L~L 78 (833)
+...+|.++.+|+.+.+
T Consensus 34 Ig~~aF~~C~~L~~i~~ 50 (100)
T 2lz0_A 34 LYDGMFSGCTALEKLIL 50 (100)
T ss_dssp CCTTSSTTCTTCCCEEE
T ss_pred EcHHHHhccCCccEEEE
Confidence 33333333333333333
No 454
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=62.96 E-value=19 Score=29.39 Aligned_cols=45 Identities=13% Similarity=0.093 Sum_probs=21.7
Q ss_pred ccccCCccccCCCCCCEEEcccccCcccCCccccCCCCCCeEEeec
Q 040925 235 LHGTIPDAIGELKNLQKLCLFRNFLQGRIPSGLGNLTKLANLELSS 280 (833)
Q Consensus 235 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 280 (833)
++.+...+|.++.+|+.+.+-.+ ++.+...+|.++.+|+.+.+..
T Consensus 8 vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 8 VVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred cCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 33344445555555555555443 2224444555555555555543
No 455
>3ls8_A Phosphatidylinositol 3-kinase catalytic subunit type 3; alpha/beta protein, PIK3C3, compound 15E, structural genomics, SGC stockholm; HET: AJZ; 2.25A {Homo sapiens} PDB: 3ihy_A
Probab=30.79 E-value=5.8e+02 Score=28.24 Aligned_cols=46 Identities=22% Similarity=0.196 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHH--HHHHHhhcCCCCceeeCCCCCCeeecCCCcEEEccccccc
Q 040925 638 LIQRVNIAIDVAS--AMEYLHHHCQPPMVHGDLKPSNVLLDHDMVAHVCDFGLAK 690 (833)
Q Consensus 638 ~~~~~~i~~qi~~--gL~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kL~DfG~a~ 690 (833)
+..+..+++.+|- -+.|+=.- +|=.++|||++.+|.+.=+|||.+-
T Consensus 454 ~~a~~nF~~S~A~ySvv~YILGi-------gDRH~~NILld~tG~v~HIDFG~~f 501 (614)
T 3ls8_A 454 AEVMDTYVKSCAGYCVITYILGV-------GDRHLDNLLLTKTGKLFHIDFGYIL 501 (614)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTC-------CCCCTTSEEECTTSCEEECCCSSCT
T ss_pred HHHHHHHHHHHHHHhHhheeeec-------cCCCCcceeEcCCCCEeeeehHHhh
Confidence 4455566655443 34555433 5778999999999999999999874
No 456
>1cja_A Protein (actin-fragmin kinase); transferase; HET: AMP; 2.90A {Physarum polycephalum} SCOP: d.144.1.3
Probab=30.21 E-value=1.9e+02 Score=29.33 Aligned_cols=146 Identities=12% Similarity=0.117 Sum_probs=71.1
Q ss_pred CccCceeccCcceEEEEEEECCCceEEEEEEeeccCCcchhHHHHHHHHHhhcCCCccceEeeEeec------------C
Q 040925 533 FSSSNMIGQGSFGYVYKGTLGEDEMIVAVKVINLKYKGASRSFVAECEALRNIRHRNLIKIITICSS------------T 600 (833)
Q Consensus 533 y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~------------~ 600 (833)
+..++....|..| ||.+.. ++..|+||... ....+.+-.++...-.+.-|..- +..+... .
T Consensus 71 v~~I~~s~~Gstg-vff~~t--d~~~~VVK~s~---~l~~E~l~s~LA~~LGlpiP~~R-iv~~~~~E~~e~~~~L~~~~ 143 (342)
T 1cja_A 71 FKGIERSEKGTEG-LFFVET--ESGVFIVKRST---NIESETFCSLLCMRLGLHAPKVR-VVSSNSEEGTNMLECLAAID 143 (342)
T ss_dssp EEEEEECCSTTSC-EEEEEE--SSCEEEEECCT---THHHHHHHHHHHHHHTCCCCCEE-EEESSSHHHHHHHHHHHHHC
T ss_pred eeEEEeccCCCCC-eEEEEe--CCCEEEEeCcH---HHHHHHHHHHHHHHhCCCCCCee-EEeeCcHHHHHHHHHHHHhh
Confidence 3444555666555 554444 36678899541 22233344444444444555522 1111100 0
Q ss_pred CC------CCCceEeEEEEecCCCChhhhhccCCCccccccCCHHHHHHHHHHHHHHHHHHhhcC-CCCcee-eCCCCCC
Q 040925 601 DF------KGTDFKAFVFEYMENGSLKDWLHQSDDQVEVCKLSLIQRVNIAIDVASAMEYLHHHC-QPPMVH-GDLKPSN 672 (833)
Q Consensus 601 ~~------~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~gL~~LH~~~-~~~ivH-~Dlkp~N 672 (833)
.. .......++|||.+|..|.+.-...- ...+.......+ +-+-++.+..... +.+.+. .-=.|+|
T Consensus 144 ~~~~~l~~l~~~~~~l~meyv~G~~L~e~~~~~~----~~~f~~~~~k~L--G~Ii~FDi~InN~DR~Pl~W~n~GN~~N 217 (342)
T 1cja_A 144 KSFRVITTLANQANILLMELVRGITLNKLTTTSA----PEVLTKSTMQQL--GSLMALDVIVNNSDRLPIAWTNEGNLDN 217 (342)
T ss_dssp SSSCHHHHHTTCSEEEEEECCCEEESTTCCSSSH----HHHSCHHHHHHH--HHHHHHHHHHTCCSSSCSSSCSCCCGGG
T ss_pred hhhHHHHHhhcccceehhhhcCCCccccchhhhh----hhhcCHHHHHhh--chhheehhhhcCCccCcccccCCCChhh
Confidence 00 01224569999999766655322210 002332222221 1123444444442 222222 2358899
Q ss_pred eeecCCC-cEEEcccccccc
Q 040925 673 VLLDHDM-VAHVCDFGLAKF 691 (833)
Q Consensus 673 Ill~~~~-~~kL~DfG~a~~ 691 (833)
||++.++ .+.++|-+.+..
T Consensus 218 IL~~~~n~~~~~IDhn~af~ 237 (342)
T 1cja_A 218 IMLSERGATVVPIDSKIIPL 237 (342)
T ss_dssp EEEESBTTCEEECSCCCCCC
T ss_pred eEEeCCCCeEEEEcCCcccc
Confidence 9998755 489999999864
No 457
>2k9y_A Ephrin type-A receptor 2; receptor tyrosine kinase, membrane protein, dimeric transmembrane domain, ephrin receptor, ATP-binding, glycoprotein; NMR {Homo sapiens}
Probab=28.35 E-value=14 Score=24.31 Aligned_cols=9 Identities=44% Similarity=0.560 Sum_probs=3.5
Q ss_pred hhhhHHHHH
Q 040925 483 VAVSSLILS 491 (833)
Q Consensus 483 ~~~~~~~l~ 491 (833)
+++++++++
T Consensus 19 vv~Gv~ll~ 27 (41)
T 2k9y_A 19 VAVGVVLLL 27 (41)
T ss_dssp HHHHHHHHH
T ss_pred hhHHHHHHH
Confidence 333444333
Done!