Query 040928
Match_columns 115
No_of_seqs 101 out of 225
Neff 5.2
Searched_HMMs 46136
Date Fri Mar 29 13:13:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040928.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040928hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3240 Phosphatidylinositol s 100.0 4.2E-44 9.1E-49 276.3 8.0 111 1-111 97-207 (218)
2 PF08956 DUF1869: Domain of un 50.1 15 0.00032 23.8 2.0 24 91-114 36-59 (60)
3 PF13939 TisB_toxin: Toxin Tis 45.8 30 0.00064 19.0 2.5 20 90-109 7-26 (28)
4 PRK14754 toxic peptide TisB; P 43.1 54 0.0012 18.0 3.3 21 89-109 6-26 (29)
5 TIGR02736 cbb3_Q_epsi cytochro 27.1 75 0.0016 20.3 2.5 26 1-26 5-30 (56)
6 PHA02650 hypothetical protein; 26.6 1.6E+02 0.0035 20.1 4.2 50 16-69 24-73 (81)
7 PF13080 DUF3926: Protein of u 24.7 55 0.0012 19.8 1.5 15 93-107 14-28 (44)
8 PHA02975 hypothetical protein; 23.2 2.2E+02 0.0047 18.9 4.2 15 17-31 25-39 (69)
9 PF03857 Colicin_im: Colicin i 22.6 1.9E+02 0.004 21.6 4.3 11 86-96 123-133 (138)
10 KOG2822 Sphingoid base-phospha 19.1 92 0.002 27.0 2.3 23 49-71 85-107 (407)
No 1
>KOG3240 consensus Phosphatidylinositol synthase [Lipid transport and metabolism]
Probab=100.00 E-value=4.2e-44 Score=276.26 Aligned_cols=111 Identities=42% Similarity=0.583 Sum_probs=106.5
Q ss_pred ChhHHHHHHHhhhhHHHHhHhhhcCCCCCcccCCCcchhhhhhccChhHHHHHHHHHHHHHHHHHHHhhhhcccccCchH
Q 040928 1 LVFVSLLALDIGSHWLQMYSTFLRGKTSHEDVKDSTNWLFKAYYGNRMFMGYCCVAFEVLYLILFLIAEKQCESLVDGSP 80 (115)
Q Consensus 1 ~~Fq~l~~LDi~SHw~hmyssl~~G~~SHK~v~~~~~~iLrlYY~~r~~Lf~~C~gnE~Fyi~LYll~f~~~~~~~~~~~ 80 (115)
++||+.+++||+|||+|||+|.+.|++|||++|++.||+||+|||||++||++|++||+||+.||+++|.++|.+.+..+
T Consensus 97 ~~fqL~~~lDiaSHwlhm~st~l~G~sSHK~v~~~~n~llrLYY~~r~vL~~~C~~nE~Fyi~LYl~~f~~~pll~~~~~ 176 (218)
T KOG3240|consen 97 VFFQLSMALDIASHWLHMHSTVLVGKSSHKDVDDSTNWLLRLYYTNRDVLFTICAGNELFYILLYLLAFSQGPLLGNVVV 176 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccccccccccceeEEEEecCcceehhhhhhHHHHHHHHHHHHcCCCCceeeeeH
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999998888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhcCc
Q 040928 81 LSFLVALSLFGWAIKQMINVIQVTCTPYDGN 111 (115)
Q Consensus 81 ~~~l~~vs~P~~~~Kq~iNvvQl~~A~~~~~ 111 (115)
+.+...+++|+..+||+|||||+++||...+
T Consensus 177 ~s~~~~lsfp~a~~KqlInVi~l~tAa~~~~ 207 (218)
T KOG3240|consen 177 FSITQILSFPLALLKQLINVIQLITAADVCV 207 (218)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999998654
No 2
>PF08956 DUF1869: Domain of unknown function (DUF1869); InterPro: IPR015051 This domain is found in a set of hypothetical bacterial proteins. ; PDB: 1NEI_A.
Probab=50.06 E-value=15 Score=23.80 Aligned_cols=24 Identities=25% Similarity=0.392 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHhhhhcCcccc
Q 040928 91 GWAIKQMINVIQVTCTPYDGNVCL 114 (115)
Q Consensus 91 ~~~~Kq~iNvvQl~~A~~~~~~~~ 114 (115)
.-++|-+||++-.+++..+-++|.
T Consensus 36 A~~VK~LvniVrgY~sdeet~vcg 59 (60)
T PF08956_consen 36 ADAVKDLVNIVRGYESDEETNVCG 59 (60)
T ss_dssp HHHHHHHHHHHHHTTSSSSS-SS-
T ss_pred HHHHHHHHHHhcCccccccccccC
Confidence 357899999999999999999994
No 3
>PF13939 TisB_toxin: Toxin TisB, type I toxin-antitoxin system
Probab=45.81 E-value=30 Score=18.97 Aligned_cols=20 Identities=15% Similarity=0.172 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHhhhhc
Q 040928 90 FGWAIKQMINVIQVTCTPYD 109 (115)
Q Consensus 90 P~~~~Kq~iNvvQl~~A~~~ 109 (115)
.+-++|-++.+.|+.+|...
T Consensus 7 ~ililkl~va~lqlldavlk 26 (28)
T PF13939_consen 7 IILILKLIVAVLQLLDAVLK 26 (28)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 46788999999999998753
No 4
>PRK14754 toxic peptide TisB; Provisional
Probab=43.06 E-value=54 Score=18.04 Aligned_cols=21 Identities=10% Similarity=0.104 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHhhhhc
Q 040928 89 LFGWAIKQMINVIQVTCTPYD 109 (115)
Q Consensus 89 ~P~~~~Kq~iNvvQl~~A~~~ 109 (115)
..+-++|-++.+.|+.+|...
T Consensus 6 i~ililkliva~lqlldavlk 26 (29)
T PRK14754 6 IAILILKLIVAALQLLDAVLK 26 (29)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 346788999999999998753
No 5
>TIGR02736 cbb3_Q_epsi cytochrome c oxidase, cbb3-type, CcoQ subunit, epsilon-Proteobacterial. Members of this protein family are restricted to the epsilon branch of the Proteobacteria. All members are found in operons containing the other three structural subunits of the cbb3 type of cytochrome c oxidase. These small proteins show remote sequence similarity to the CcoQ subunit in other cytochrome c oxidase systems, so this family is assumed to represent the epsilonproteobacterial variant of CcoQ.
Probab=27.06 E-value=75 Score=20.26 Aligned_cols=26 Identities=19% Similarity=0.363 Sum_probs=20.5
Q ss_pred ChhHHHHHHHhhhhHHHHhHhhhcCC
Q 040928 1 LVFVSLLALDIGSHWLQMYSTFLRGK 26 (115)
Q Consensus 1 ~~Fq~l~~LDi~SHw~hmyssl~~G~ 26 (115)
|+|.+++.+=+=|=|.|+|.|--+|+
T Consensus 5 f~~ti~lvv~LYgY~yhLYrsek~G~ 30 (56)
T TIGR02736 5 FAFTLLLVIFLYAYIYHLYRSQKKGE 30 (56)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhcccc
Confidence 35667777778899999998877773
No 6
>PHA02650 hypothetical protein; Provisional
Probab=26.65 E-value=1.6e+02 Score=20.07 Aligned_cols=50 Identities=8% Similarity=0.233 Sum_probs=26.6
Q ss_pred HHHhHhhhcCCCCCcccCCCcchhhhhhccChhHHHHHHHHHHHHHHHHHHHhh
Q 040928 16 LQMYSTFLRGKTSHEDVKDSTNWLFKAYYGNRMFMGYCCVAFEVLYLILFLIAE 69 (115)
Q Consensus 16 ~hmyssl~~G~~SHK~v~~~~~~iLrlYY~~r~~Lf~~C~gnE~Fyi~LYll~f 69 (115)
+-.--|.++++.|++...++.++..+.+- .+.+.-+.--+++..+|+-.-
T Consensus 24 I~VVkSVLtD~~~~~~~~~~~~~~~~~~~----ii~i~~v~i~~l~~flYLK~~ 73 (81)
T PHA02650 24 IDVVKSVLSDEDGSKKTIKSVSWFNGQNF----IFLIFSLIIVALFSFFVFKGY 73 (81)
T ss_pred HHHHHHHHcCCCCccccccccCCchHHHH----HHHHHHHHHHHHHHHHHHHHh
Confidence 33445678888888774334444333332 222233333567777787643
No 7
>PF13080 DUF3926: Protein of unknown function (DUF3926)
Probab=24.70 E-value=55 Score=19.85 Aligned_cols=15 Identities=33% Similarity=0.536 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHhhh
Q 040928 93 AIKQMINVIQVTCTP 107 (115)
Q Consensus 93 ~~Kq~iNvvQl~~A~ 107 (115)
-.||++|+.|==-+|
T Consensus 14 sAkqmlnILQEELss 28 (44)
T PF13080_consen 14 SAKQMLNILQEELSS 28 (44)
T ss_pred HHHHHHHHHHHHHHh
Confidence 479999999954444
No 8
>PHA02975 hypothetical protein; Provisional
Probab=23.21 E-value=2.2e+02 Score=18.89 Aligned_cols=15 Identities=20% Similarity=0.279 Sum_probs=10.9
Q ss_pred HHhHhhhcCCCCCcc
Q 040928 17 QMYSTFLRGKTSHED 31 (115)
Q Consensus 17 hmyssl~~G~~SHK~ 31 (115)
-.--|.+++++|+|.
T Consensus 25 ~vVksVLtdk~~~~~ 39 (69)
T PHA02975 25 DTIMHVLTGKKEPKK 39 (69)
T ss_pred HHHHHHHcCCCCCCc
Confidence 334567889888887
No 9
>PF03857 Colicin_im: Colicin immunity protein; InterPro: IPR005557 Colicin immunity proteins are plasmid encoded proteins necessary for protecting the cell against colicins. Colicins are toxins released by bacteria during times of stress [].; GO: 0015643 toxin binding, 0030153 bacteriocin immunity
Probab=22.58 E-value=1.9e+02 Score=21.58 Aligned_cols=11 Identities=18% Similarity=-0.064 Sum_probs=7.0
Q ss_pred HHHHHHHHHHH
Q 040928 86 ALSLFGWAIKQ 96 (115)
Q Consensus 86 ~vs~P~~~~Kq 96 (115)
.+..|+.+.|-
T Consensus 123 ~lfiP~~~~k~ 133 (138)
T PF03857_consen 123 TLFIPVLVYKL 133 (138)
T ss_pred HHHHHHHHHHH
Confidence 35667777764
No 10
>KOG2822 consensus Sphingoid base-phosphate phosphatase [Lipid transport and metabolism]
Probab=19.06 E-value=92 Score=27.02 Aligned_cols=23 Identities=13% Similarity=0.195 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhh
Q 040928 49 FMGYCCVAFEVLYLILFLIAEKQ 71 (115)
Q Consensus 49 ~Lf~~C~gnE~Fyi~LYll~f~~ 71 (115)
|.+..|.|+|+||+.--=+-+..
T Consensus 85 F~yts~lGsh~FYilfLP~~~W~ 107 (407)
T KOG2822|consen 85 FSYTSLLGSHVFYILFLPFPFWN 107 (407)
T ss_pred hhhhhhhcchhhheeehhhHHhc
Confidence 56889999999999644333333
Done!