Query 040928
Match_columns 115
No_of_seqs 101 out of 225
Neff 5.2
Searched_HMMs 29240
Date Mon Mar 25 21:30:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040928.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040928hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1nei_A Hypothetical protein YO 72.5 2.2 7.4E-05 26.7 2.1 24 91-114 36-59 (60)
2 1cn3_F Fragment of coat protei 16.0 52 0.0018 17.2 0.9 11 25-35 8-18 (29)
3 1v33_A DNA primase small subun 14.1 37 0.0013 27.5 0.0 35 12-46 3-37 (366)
4 1o7d_B Lysosomal alpha-mannosi 12.4 65 0.0022 20.7 0.8 19 41-59 43-61 (84)
5 2jhp_A VP4 core protein; viral 10.2 82 0.0028 27.5 0.9 16 7-25 547-562 (644)
6 1hgv_A PH75 inovirus major coa 9.2 99 0.0034 17.8 0.7 18 92-109 7-24 (46)
7 2okr_C MAP kinase-activated pr 8.7 1.3E+02 0.0043 15.5 0.9 13 29-41 3-15 (26)
8 4gxh_A Pyrrolidone-carboxylate 8.6 1.9E+02 0.0066 21.3 2.3 15 55-69 143-157 (216)
9 2bec_B Sodium/hydrogen exchang 8.4 74 0.0025 17.9 -0.1 12 7-18 31-42 (43)
10 1x10_A Pyrrolidone-carboxylate 6.2 2.9E+02 0.01 20.0 2.3 14 55-68 141-154 (208)
No 1
>1nei_A Hypothetical protein YOAG; alpha/beta protein, homodimer, OCSP, NESG, protein structure initiative, structural genomics, PSI; NMR {Escherichia coli} SCOP: d.253.1.1
Probab=72.50 E-value=2.2 Score=26.65 Aligned_cols=24 Identities=25% Similarity=0.379 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHhhhhcCcccc
Q 040928 91 GWAIKQMINVIQVTCTPYDGNVCL 114 (115)
Q Consensus 91 ~~~~Kq~iNvvQl~~A~~~~~~~~ 114 (115)
-=++|-+||+|-.+++..+-++|-
T Consensus 36 a~~vK~LvniVrgYd~deetnVcg 59 (60)
T 1nei_A 36 AEVIKDLVNTVRSYDTENEHDVCG 59 (60)
T ss_dssp HHHHHHHHHHHHHTTSSSSSCSCC
T ss_pred HHHHHHHHHHHhcccccccccccC
Confidence 357899999999999999999994
No 2
>1cn3_F Fragment of coat protein VP2; viral coat protein VP1, viral coat protein VP2, viral entry, viral protein; 2.20A {Polyomavirus}
Probab=16.01 E-value=52 Score=17.22 Aligned_cols=11 Identities=36% Similarity=0.598 Sum_probs=8.6
Q ss_pred CCCCCcccCCC
Q 040928 25 GKTSHEDVKDS 35 (115)
Q Consensus 25 G~~SHK~v~~~ 35 (115)
|..||..+.++
T Consensus 8 gaashqrvtpd 18 (29)
T 1cn3_F 8 GAASHQRVTPD 18 (29)
T ss_dssp TTTCCCCCEEG
T ss_pred ccccccccCch
Confidence 56899998864
No 3
>1v33_A DNA primase small subunit; nucleotidyl transferase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: DNA; 1.80A {Pyrococcus horikoshii} SCOP: d.264.1.1 PDB: 1v34_A* 1g71_A*
Probab=14.13 E-value=37 Score=27.49 Aligned_cols=35 Identities=29% Similarity=0.226 Sum_probs=13.8
Q ss_pred hhhHHHHhHhhhcCCCCCcccCCCcchhhhhhccC
Q 040928 12 GSHWLQMYSTFLRGKTSHEDVKDSTNWLFKAYYGN 46 (115)
Q Consensus 12 ~SHw~hmyssl~~G~~SHK~v~~~~~~iLrlYY~~ 46 (115)
+||--|-++|-+..+.+|-..++...-.|+.||.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~YY~r 37 (366)
T 1v33_A 3 SSHHHHHHSSGLVPRGSHMLLREVTREERKNFYTN 37 (366)
T ss_dssp ------------------CCSCCCCHHHHHHHHHH
T ss_pred CcccccccccccccccceeeeccCCHHHHHHHHHh
Confidence 57878888887777788888887777788999973
No 4
>1o7d_B Lysosomal alpha-mannosidase; hydrolase, glycosyl hydrolase family 38; HET: NAG BMA MAN NDG; 2.70A {Bos taurus} SCOP: a.8.3.1 c.6.2.1
Probab=12.37 E-value=65 Score=20.71 Aligned_cols=19 Identities=11% Similarity=0.008 Sum_probs=12.6
Q ss_pred hhhccChhHHHHHHHHHHH
Q 040928 41 KAYYGNRMFMGYCCVAFEV 59 (115)
Q Consensus 41 rlYY~~r~~Lf~~C~gnE~ 59 (115)
.=|||+||.+=-+---.|-
T Consensus 43 tGyyTSRp~lK~~~R~~~~ 61 (84)
T 1o7d_B 43 TGYFSSRPALKRYERLSYN 61 (84)
T ss_dssp CGGGTSCHHHHHHHHHHHH
T ss_pred eeeeeCCHHHHHHHHHHHH
Confidence 4589999988655444443
No 5
>2jhp_A VP4 core protein; viral protein, viral capping enzyme, virion PR viral protein; HET: SAH GUN; 2.5A {Bluetongue virus 10} PDB: 2jh8_A* 2jha_A* 2jhc_A* 2jh9_A*
Probab=10.23 E-value=82 Score=27.52 Aligned_cols=16 Identities=38% Similarity=0.935 Sum_probs=9.9
Q ss_pred HHHHhhhhHHHHhHhhhcC
Q 040928 7 LALDIGSHWLQMYSTFLRG 25 (115)
Q Consensus 7 ~~LDi~SHw~hmyssl~~G 25 (115)
+.||++|| .|.|+++|
T Consensus 547 mglD~SGH---L~i~L~Sg 562 (644)
T 2jhp_A 547 MGLDLSGH---LYVTLMSG 562 (644)
T ss_dssp ---CHHHH---HHHHHHHS
T ss_pred hCcCccCc---EEEEEecC
Confidence 67999997 46777666
No 6
>1hgv_A PH75 inovirus major coat protein; virus coat protein, helical virus coat protein, ssDNA viruses, filamentous bacteriophage, thermophiles; 2.4A {Bacteriophage PH75} SCOP: h.1.4.1 PDB: 1hgz_A 1hh0_A
Probab=9.16 E-value=99 Score=17.80 Aligned_cols=18 Identities=22% Similarity=0.043 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHhhhhc
Q 040928 92 WAIKQMINVIQVTCTPYD 109 (115)
Q Consensus 92 ~~~Kq~iNvvQl~~A~~~ 109 (115)
-+..|++|-+|.+.|+--
T Consensus 7 eia~~v~~yi~~iaaagv 24 (46)
T 1hgv_A 7 EVASQVTNYIQAIAAAGV 24 (46)
T ss_dssp HHHHHHHTTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccc
Confidence 345678888888877643
No 7
>2okr_C MAP kinase-activated protein kinase 2; NLS, NES, heterodimer, docking groove, transferase; 2.00A {Homo sapiens}
Probab=8.73 E-value=1.3e+02 Score=15.51 Aligned_cols=13 Identities=23% Similarity=0.355 Sum_probs=9.4
Q ss_pred CcccCCCcchhhh
Q 040928 29 HEDVKDSTNWLFK 41 (115)
Q Consensus 29 HK~v~~~~~~iLr 41 (115)
=|+.+++.|++|.
T Consensus 3 iK~L~~snNpLL~ 15 (26)
T 2okr_C 3 IKKIEDASNPLLL 15 (26)
T ss_dssp CCCTTTCCCHHHH
T ss_pred ccccccccCHHHH
Confidence 3677888888773
No 8
>4gxh_A Pyrrolidone-carboxylate peptidase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, hydrolase; 2.70A {Xenorhabdus bovienii}
Probab=8.59 E-value=1.9e+02 Score=21.27 Aligned_cols=15 Identities=33% Similarity=0.543 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHhh
Q 040928 55 VAFEVLYLILFLIAE 69 (115)
Q Consensus 55 ~gnE~Fyi~LYll~f 69 (115)
+||+++|-+|+.+.-
T Consensus 143 lCN~i~Y~sL~~~~~ 157 (216)
T 4gxh_A 143 VCNHVMYGLLHYLAQ 157 (216)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 589999999998753
No 9
>2bec_B Sodium/hydrogen exchanger 1; calcineurin-homologous protein, calcium-binding protein, NHE1 regulating protein; 2.70A {Homo sapiens} PDB: 2e30_B
Probab=8.45 E-value=74 Score=17.93 Aligned_cols=12 Identities=25% Similarity=0.133 Sum_probs=6.0
Q ss_pred HHHHhhhhHHHH
Q 040928 7 LALDIGSHWLQM 18 (115)
Q Consensus 7 ~~LDi~SHw~hm 18 (115)
-+=||+|||-|-
T Consensus 31 GiEdi~G~~g~~ 42 (43)
T 2bec_B 31 GIEDICGHYGHH 42 (43)
T ss_dssp HHHHHHCC----
T ss_pred chHhhcCCCCCC
Confidence 345899998763
No 10
>1x10_A Pyrrolidone-carboxylate peptidase; stability of protein, hydrolase; 2.00A {Pyrococcus furiosus} PDB: 1z8t_A 1z8x_A 1ioi_A 1x12_A 1z8w_A 2eo8_A 1iof_A 2df5_A
Probab=6.23 E-value=2.9e+02 Score=20.04 Aligned_cols=14 Identities=36% Similarity=0.380 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHh
Q 040928 55 VAFEVLYLILFLIA 68 (115)
Q Consensus 55 ~gnE~Fyi~LYll~ 68 (115)
+||+++|-+|+...
T Consensus 141 lCN~i~Y~sL~~~~ 154 (208)
T 1x10_A 141 LSNYVMYLSLHHSA 154 (208)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHH
Confidence 58999999999985
Done!