Query 040928
Match_columns 115
No_of_seqs 101 out of 225
Neff 5.2
Searched_HMMs 13730
Date Mon Mar 25 21:30:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040928.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/040928hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1neia_ d.253.1.1 (A:) Hypothe 43.2 6.8 0.0005 22.8 2.1 24 91-114 36-59 (60)
2 d1w7ca3 d.17.2.1 (A:170-315) L 11.5 22 0.0016 23.9 -0.2 21 28-48 85-105 (146)
3 d1a2za_ c.56.4.1 (A:) Pyrrolid 6.6 1.3E+02 0.0092 20.4 2.3 15 55-69 142-156 (220)
4 d2pbea1 a.160.1.5 (A:138-282) 6.2 1.6E+02 0.012 18.9 2.6 17 51-68 15-31 (145)
5 d2axti1 f.23.37.1 (I:1-35) Pho 5.7 1.6E+02 0.011 14.8 1.8 14 58-71 12-25 (35)
6 d1h99a1 a.142.1.1 (A:54-168) T 5.5 1.6E+02 0.011 17.0 2.0 13 57-69 98-110 (115)
7 d1zh8a2 d.81.1.5 (A:132-275) H 4.8 1.6E+02 0.012 17.3 1.7 17 7-23 52-68 (144)
8 d3bvua1 a.8.3.1 (A:412-522) Go 4.5 1.1E+02 0.0083 18.3 0.8 18 43-60 7-24 (111)
9 d1auga_ c.56.4.1 (A:) Pyrrolid 4.5 2.1E+02 0.015 18.9 2.3 15 55-69 143-157 (210)
10 d1v54j_ f.23.4.1 (J:) Mitochon 4.0 3.6E+02 0.026 14.8 2.9 30 38-69 26-55 (58)
No 1
>d1neia_ d.253.1.1 (A:) Hypothetical protein YoaG {Escherichia coli [TaxId: 562]}
Probab=43.23 E-value=6.8 Score=22.76 Aligned_cols=24 Identities=25% Similarity=0.379 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHhhhhcCcccc
Q 040928 91 GWAIKQMINVIQVTCTPYDGNVCL 114 (115)
Q Consensus 91 ~~~~Kq~iNvvQl~~A~~~~~~~~ 114 (115)
.-..|-++|++..+++-.+-++|.
T Consensus 36 ae~vKdLvNiVRgYd~deetnVCG 59 (60)
T d1neia_ 36 AEVIKDLVNTVRSYDTENEHDVCG 59 (60)
T ss_dssp HHHHHHHHHHHHHTTSSSSSCSCC
T ss_pred HHHHHHHHHHHhcCCccccccccC
Confidence 356899999999999999999994
No 2
>d1w7ca3 d.17.2.1 (A:170-315) Lysyl oxidase PplO, domains 1 and 2 {Yeast (Pichia pastoris) [TaxId: 4922]}
Probab=11.54 E-value=22 Score=23.88 Aligned_cols=21 Identities=14% Similarity=0.150 Sum_probs=17.7
Q ss_pred CCcccCCCcchhhhhhccChh
Q 040928 28 SHEDVKDSTNWLFKAYYGNRM 48 (115)
Q Consensus 28 SHK~v~~~~~~iLrlYY~~r~ 48 (115)
-|+..|.+++.+.++||+++-
T Consensus 85 D~~g~Dps~W~V~~v~Yng~~ 105 (146)
T d1w7ca3 85 DMTGRDVSQWKMLEYIYNNKV 105 (146)
T ss_dssp ECCSSCGGGCEEEEEEETTEE
T ss_pred ecCCCChHHeEEEEEEECCEE
Confidence 578888999999999998763
No 3
>d1a2za_ c.56.4.1 (A:) Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase) {Archaeon Thermococcus litoralis [TaxId: 2265]}
Probab=6.63 E-value=1.3e+02 Score=20.44 Aligned_cols=15 Identities=13% Similarity=0.138 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHhh
Q 040928 55 VAFEVLYLILFLIAE 69 (115)
Q Consensus 55 ~gnE~Fyi~LYll~f 69 (115)
+|||++|-.|+...-
T Consensus 142 lCN~~~Y~sl~~~~~ 156 (220)
T d1a2za_ 142 LCNYVMFKTLHFSKI 156 (220)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHH
Confidence 589999999998754
No 4
>d2pbea1 a.160.1.5 (A:138-282) Aminoglycoside 6-adenylyltransferase AadK {Bacillus subtilis [TaxId: 1423]}
Probab=6.23 E-value=1.6e+02 Score=18.89 Aligned_cols=17 Identities=12% Similarity=0.174 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 040928 51 GYCCVAFEVLYLILFLIA 68 (115)
Q Consensus 51 f~~C~gnE~Fyi~LYll~ 68 (115)
|--| +||.++++.|...
T Consensus 15 F~~c-cNEFww~s~~VaK 31 (145)
T d2pbea1 15 FDDC-CNEFWMVSTYVVK 31 (145)
T ss_dssp HHHH-HHHHHHHHHHHHH
T ss_pred HHHH-HHHHHHHHHHHHH
Confidence 4445 8999999998874
No 5
>d2axti1 f.23.37.1 (I:1-35) Photosystem II reaction center protein I, PsbI {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=5.74 E-value=1.6e+02 Score=14.85 Aligned_cols=14 Identities=14% Similarity=0.437 Sum_probs=11.1
Q ss_pred HHHHHHHHHHhhhh
Q 040928 58 EVLYLILFLIAEKQ 71 (115)
Q Consensus 58 E~Fyi~LYll~f~~ 71 (115)
-.||++|++..|-+
T Consensus 12 V~fFv~lFiFGFLS 25 (35)
T d2axti1 12 VTFFVLLFVFGFLS 25 (35)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhcc
Confidence 46899999998844
No 6
>d1h99a1 a.142.1.1 (A:54-168) Transcriptional antiterminator LicT {Bacillus subtilis [TaxId: 1423]}
Probab=5.47 E-value=1.6e+02 Score=17.01 Aligned_cols=13 Identities=15% Similarity=0.294 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHhh
Q 040928 57 FEVLYLILFLIAE 69 (115)
Q Consensus 57 nE~Fyi~LYll~f 69 (115)
.|..|+++|+.+-
T Consensus 98 ~Ei~yi~lhi~~a 110 (115)
T d1h99a1 98 DEAGFIALHIVNA 110 (115)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 6889999988753
No 7
>d1zh8a2 d.81.1.5 (A:132-275) Hypothetical protein TM0312 {Thermotoga maritima [TaxId: 2336]}
Probab=4.78 E-value=1.6e+02 Score=17.29 Aligned_cols=17 Identities=24% Similarity=0.216 Sum_probs=13.6
Q ss_pred HHHHhhhhHHHHhHhhh
Q 040928 7 LALDIGSHWLQMYSTFL 23 (115)
Q Consensus 7 ~~LDi~SHw~hmyssl~ 23 (115)
..+|.++|++.+-..+.
T Consensus 52 ~l~d~g~H~id~~~~l~ 68 (144)
T d1zh8a2 52 FLSDGGVHHAAAMRLIL 68 (144)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred hHHHhhHHHHHHHHhcc
Confidence 57999999999866543
No 8
>d3bvua1 a.8.3.1 (A:412-522) Golgi alpha-mannosidase II {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=4.55 E-value=1.1e+02 Score=18.31 Aligned_cols=18 Identities=17% Similarity=0.198 Sum_probs=11.7
Q ss_pred hccChhHHHHHHHHHHHH
Q 040928 43 YYGNRMFMGYCCVAFEVL 60 (115)
Q Consensus 43 YY~~r~~Lf~~C~gnE~F 60 (115)
|||+|+.+=-..--.|-+
T Consensus 7 ~yTSr~~lK~~~R~~e~~ 24 (111)
T d3bvua1 7 YYTSRPYHKRMDRVLMHY 24 (111)
T ss_dssp GGTSSHHHHHHHHHHHHH
T ss_pred ehhChHHHHHHHHHHHHH
Confidence 788888776555444443
No 9
>d1auga_ c.56.4.1 (A:) Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase) {Bacillus amyloliquefaciens [TaxId: 1390]}
Probab=4.52 E-value=2.1e+02 Score=18.90 Aligned_cols=15 Identities=20% Similarity=0.273 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHhh
Q 040928 55 VAFEVLYLILFLIAE 69 (115)
Q Consensus 55 ~gnE~Fyi~LYll~f 69 (115)
++||++|-+|....-
T Consensus 143 lCN~~yY~sL~~~~~ 157 (210)
T d1auga_ 143 VCNHLFYGLMDEISR 157 (210)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHh
Confidence 489999999987643
No 10
>d1v54j_ f.23.4.1 (J:) Mitochondrial cytochrome c oxidase subunit VIIa {Cow (Bos taurus) [TaxId: 9913]}
Probab=3.98 E-value=3.6e+02 Score=14.77 Aligned_cols=30 Identities=17% Similarity=-0.019 Sum_probs=16.8
Q ss_pred hhhhhhccChhHHHHHHHHHHHHHHHHHHHhh
Q 040928 38 WLFKAYYGNRMFMGYCCVAFEVLYLILFLIAE 69 (115)
Q Consensus 38 ~iLrlYY~~r~~Lf~~C~gnE~Fyi~LYll~f 69 (115)
..=++.| |..|..+.+|.---.-.||..+|
T Consensus 26 ~~D~~LY--r~Tm~L~~~G~~~s~~~l~~a~~ 55 (58)
T d1v54j_ 26 ATDNILY--RVTMTLCLGGTLYSLYCLGWASF 55 (58)
T ss_dssp HHHHHHH--HHHHHHHHHHHHHHHHHHHHHTS
T ss_pred cchHHHH--HHHHHHHHHHHHHHHHHHHHHhC
Confidence 3445667 66777776664443334555544
Done!