BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 040932
         (97 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3MJG|X Chain X, The Structure Of A Platelet Derived Growth Factor Receptor
           Complex
 pdb|3MJG|Y Chain Y, The Structure Of A Platelet Derived Growth Factor Receptor
           Complex
          Length = 289

 Score = 28.1 bits (61), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 3/42 (7%)

Query: 44  ERKRFVVPISYLNHPLFADLLNRAEEEFGFNHPMGGLTIPCK 85
           ERKR  +   ++  P    L N AEE F F   +  +TIPC+
Sbjct: 80  ERKRLYI---FVPDPTVGFLPNDAEELFIFLTEITEITIPCR 118


>pdb|3P0R|A Chain A, Crystal Structure Of Azoreductase From Bacillus Anthracis
           Str. Sterne
          Length = 211

 Score = 27.7 bits (60), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 21/54 (38%), Positives = 25/54 (46%), Gaps = 7/54 (12%)

Query: 42  EMERKRFVVPISYLNHPLFADLLNRAEEEFGFNHPMGGLTIPCKEDAFIDLTSR 95
           E E K   V   YLN  L AD +      FGF  P+  LTIP     +ID  +R
Sbjct: 74  EEEAKAVAVADKYLNQFLEADKV-----VFGF--PLWNLTIPAVLHTYIDYLNR 120


>pdb|2WPW|A Chain A, Tandem Gnat Protein From The Clavulanic Acid Biosynthesis
           Pathway (Without Accoa)
 pdb|2WPW|B Chain B, Tandem Gnat Protein From The Clavulanic Acid Biosynthesis
           Pathway (Without Accoa)
 pdb|2WPW|C Chain C, Tandem Gnat Protein From The Clavulanic Acid Biosynthesis
           Pathway (Without Accoa)
 pdb|2WPW|D Chain D, Tandem Gnat Protein From The Clavulanic Acid Biosynthesis
           Pathway (Without Accoa)
          Length = 339

 Score = 26.6 bits (57), Expect = 3.8,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 2/55 (3%)

Query: 16  LKRHNNHALKSADQVVPRGHIAVYVGEMERKRFVVPISYLNHPLFADLLNRAEEE 70
           L RH+   L      VP G+  V  G +    + VP+S L   L A  ++RA +E
Sbjct: 163 LDRHD--PLADGVPAVPAGYSLVTWGTITPDEYAVPVSELELSLGAGPVDRAAQE 215


>pdb|2WPX|A Chain A, Tandem Gnat Protein From The Clavulanic Acid Biosynthesis
           Pathway (With Accoa)
 pdb|2WPX|B Chain B, Tandem Gnat Protein From The Clavulanic Acid Biosynthesis
           Pathway (With Accoa)
          Length = 339

 Score = 26.6 bits (57), Expect = 4.0,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 2/55 (3%)

Query: 16  LKRHNNHALKSADQVVPRGHIAVYVGEMERKRFVVPISYLNHPLFADLLNRAEEE 70
           L RH+   L      VP G+  V  G +    + VP+S L   L A  ++RA +E
Sbjct: 163 LDRHD--PLADGVPAVPAGYSLVTWGTITPDEYAVPVSELELSLGAGPVDRAAQE 215


>pdb|1MG7|A Chain A, Crystal Structure Of Xol-1
 pdb|1MG7|B Chain B, Crystal Structure Of Xol-1
          Length = 417

 Score = 26.2 bits (56), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 11/29 (37%), Positives = 17/29 (58%)

Query: 63  LLNRAEEEFGFNHPMGGLTIPCKEDAFID 91
           L+N  E+  GF    GG+ +  K+D+F D
Sbjct: 286 LMNEHEQVEGFEVQQGGILVALKKDSFFD 314


>pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From
          Thermotoga Maritima
          Length = 240

 Score = 25.4 bits (54), Expect = 8.8,   Method: Compositional matrix adjust.
 Identities = 10/20 (50%), Positives = 12/20 (60%)

Query: 22 HALKSADQVVPRGHIAVYVG 41
          HA+K  D  VPRG I   +G
Sbjct: 20 HAIKGIDLKVPRGQIVTLIG 39


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.325    0.140    0.426 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,851,923
Number of Sequences: 62578
Number of extensions: 104617
Number of successful extensions: 301
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 298
Number of HSP's gapped (non-prelim): 6
length of query: 97
length of database: 14,973,337
effective HSP length: 63
effective length of query: 34
effective length of database: 11,030,923
effective search space: 375051382
effective search space used: 375051382
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 45 (21.9 bits)