Query 040932
Match_columns 97
No_of_seqs 108 out of 626
Neff 4.8
Searched_HMMs 46136
Date Fri Mar 29 13:14:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040932.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040932hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03090 auxin-responsive fami 100.0 4.3E-41 9.3E-46 231.9 10.1 95 1-97 1-104 (104)
2 PLN03220 uncharacterized prote 100.0 9.4E-40 2E-44 225.5 10.0 94 1-95 1-102 (105)
3 PF02519 Auxin_inducible: Auxi 100.0 3.5E-36 7.7E-41 205.2 8.4 68 28-97 33-100 (100)
4 PLN03219 uncharacterized prote 100.0 3.4E-35 7.3E-40 203.7 9.6 69 27-95 35-104 (108)
5 PF02214 BTB_2: BTB/POZ domain 86.7 0.71 1.5E-05 29.5 2.6 56 37-96 2-60 (94)
6 PF02100 ODC_AZ: Ornithine dec 85.8 1.1 2.5E-05 30.7 3.4 51 44-96 23-77 (108)
7 PRK02899 adaptor protein; Prov 82.1 1.3 2.8E-05 33.3 2.6 23 59-82 40-62 (197)
8 smart00666 PB1 PB1 domain. Pho 79.5 6.1 0.00013 24.4 4.7 48 40-93 8-65 (81)
9 PRK02315 adaptor protein; Prov 76.9 2 4.4E-05 32.9 2.2 24 58-82 39-62 (233)
10 PF05389 MecA: Negative regula 69.9 1.5 3.2E-05 32.8 0.0 25 57-82 38-62 (220)
11 cd05992 PB1 The PB1 domain is 62.2 33 0.00072 20.8 5.7 52 38-94 5-66 (81)
12 PRK14186 bifunctional 5,10-met 51.6 38 0.00082 27.2 5.0 54 31-97 31-86 (297)
13 PRK14193 bifunctional 5,10-met 50.6 43 0.00093 26.7 5.2 53 32-97 32-86 (284)
14 cd06410 PB1_UP2 Uncharacterize 50.3 42 0.00091 22.6 4.4 46 37-87 17-74 (97)
15 PRK10792 bifunctional 5,10-met 50.0 71 0.0015 25.5 6.3 53 32-97 33-87 (285)
16 PRK14189 bifunctional 5,10-met 49.5 82 0.0018 25.1 6.6 54 31-97 31-86 (285)
17 PRK10308 3-methyl-adenine DNA 49.4 61 0.0013 25.4 5.8 63 33-96 45-121 (283)
18 PF08861 DUF1828: Domain of un 49.3 49 0.0011 21.3 4.5 39 57-95 44-82 (90)
19 PF02209 VHP: Villin headpiece 48.3 8.6 0.00019 21.8 0.7 19 54-72 1-19 (36)
20 PRK14172 bifunctional 5,10-met 47.8 84 0.0018 25.0 6.4 52 33-97 33-86 (278)
21 PRK14177 bifunctional 5,10-met 47.4 90 0.002 24.9 6.6 52 33-97 34-87 (284)
22 smart00153 VHP Villin headpiec 46.8 10 0.00023 21.4 0.9 19 54-72 1-19 (36)
23 PF06544 DUF1115: Protein of u 46.0 70 0.0015 21.9 5.1 27 48-74 2-28 (128)
24 PF12062 HSNSD: heparan sulfat 44.2 18 0.0004 31.2 2.3 43 30-73 92-141 (487)
25 PRK14179 bifunctional 5,10-met 42.7 1.2E+02 0.0026 24.2 6.5 53 32-97 32-86 (284)
26 PRK14188 bifunctional 5,10-met 42.3 70 0.0015 25.5 5.2 54 31-97 31-86 (296)
27 PF11876 DUF3396: Protein of u 40.7 26 0.00057 26.4 2.5 41 44-84 23-65 (208)
28 PF00651 BTB: BTB/POZ domain; 40.6 81 0.0018 19.6 4.5 54 36-96 13-71 (111)
29 PF11834 DUF3354: Domain of un 40.2 25 0.00055 22.5 2.0 24 45-74 19-42 (69)
30 PF12058 DUF3539: Protein of u 40.2 5.7 0.00012 27.0 -1.1 10 53-62 4-13 (88)
31 PF00564 PB1: PB1 domain; Int 39.5 88 0.0019 19.0 4.7 45 38-87 6-61 (84)
32 PRK14192 bifunctional 5,10-met 38.5 1.5E+02 0.0032 23.3 6.5 54 31-97 32-87 (283)
33 PRK14171 bifunctional 5,10-met 37.9 1.7E+02 0.0038 23.4 6.8 53 32-97 32-86 (288)
34 PF14317 YcxB: YcxB-like prote 37.8 74 0.0016 17.8 3.6 31 32-64 28-58 (62)
35 PRK14166 bifunctional 5,10-met 37.4 1.5E+02 0.0032 23.7 6.3 54 31-97 29-84 (282)
36 cd06407 PB1_NLP A PB1 domain i 37.1 1.2E+02 0.0025 19.7 5.9 47 39-90 6-63 (82)
37 cd06398 PB1_Joka2 The PB1 doma 36.8 1.3E+02 0.0027 20.0 6.1 53 40-93 7-71 (91)
38 PLN02897 tetrahydrofolate dehy 36.8 1.5E+02 0.0032 24.5 6.4 53 32-97 86-140 (345)
39 PRK14176 bifunctional 5,10-met 36.4 1.9E+02 0.0042 23.1 6.9 54 31-97 37-92 (287)
40 PF08948 DUF1859: Domain of un 34.6 15 0.00032 26.1 0.3 28 32-61 86-123 (126)
41 PRK14167 bifunctional 5,10-met 34.5 1.6E+02 0.0034 23.7 6.1 54 31-97 30-85 (297)
42 PRK14184 bifunctional 5,10-met 34.5 1.9E+02 0.004 23.1 6.5 54 31-97 30-85 (286)
43 PRK14190 bifunctional 5,10-met 34.3 1.1E+02 0.0025 24.3 5.2 54 31-97 31-86 (284)
44 PRK02797 4-alpha-L-fucosyltran 33.5 1.9E+02 0.004 23.8 6.4 45 30-74 141-206 (322)
45 TIGR03793 TOMM_pelo TOMM prope 32.7 74 0.0016 20.6 3.4 27 55-82 14-44 (77)
46 PRK14170 bifunctional 5,10-met 32.6 1.2E+02 0.0026 24.2 5.1 54 31-97 30-85 (284)
47 PRK14174 bifunctional 5,10-met 31.7 2.2E+02 0.0047 22.8 6.5 54 31-97 30-85 (295)
48 PRK14194 bifunctional 5,10-met 31.5 1.4E+02 0.003 24.0 5.3 54 31-97 32-87 (301)
49 PF11822 DUF3342: Domain of un 31.0 65 0.0014 26.3 3.5 49 44-96 12-65 (317)
50 PRK14169 bifunctional 5,10-met 30.8 2.3E+02 0.0049 22.6 6.4 53 32-97 30-84 (282)
51 PRK14180 bifunctional 5,10-met 30.6 2.3E+02 0.005 22.6 6.4 54 31-97 30-85 (282)
52 TIGR02529 EutJ ethanolamine ut 30.4 58 0.0013 24.5 2.9 42 45-87 32-73 (239)
53 PRK14187 bifunctional 5,10-met 30.4 1.4E+02 0.0031 23.9 5.3 54 31-97 31-86 (294)
54 PRK14191 bifunctional 5,10-met 29.5 2.5E+02 0.0055 22.4 6.5 54 31-97 30-85 (285)
55 PF07429 Glyco_transf_56: 4-al 28.5 1.5E+02 0.0033 24.7 5.2 45 30-74 180-245 (360)
56 PF10087 DUF2325: Uncharacteri 28.3 1.7E+02 0.0036 18.8 5.4 47 45-96 49-96 (97)
57 cd01406 SIR2-like Sir2-like: P 27.3 77 0.0017 23.4 3.1 36 34-76 1-36 (242)
58 PRK14185 bifunctional 5,10-met 27.1 3.1E+02 0.0066 22.0 6.6 54 31-97 30-85 (293)
59 cd06396 PB1_NBR1 The PB1 domai 27.1 1.9E+02 0.0041 19.0 5.4 45 44-90 10-62 (81)
60 COG1759 5-formaminoimidazole-4 26.7 29 0.00062 28.9 0.7 24 29-52 88-112 (361)
61 cd06536 CIDE_N_ICAD CIDE_N dom 26.6 1.2E+02 0.0025 20.1 3.5 36 44-84 12-47 (80)
62 PRK14183 bifunctional 5,10-met 26.3 1E+02 0.0022 24.6 3.7 54 31-97 30-85 (281)
63 PLN02616 tetrahydrofolate dehy 26.2 3.1E+02 0.0067 22.9 6.6 54 31-97 102-157 (364)
64 PF05194 UreE_C: UreE urease a 26.1 96 0.0021 19.9 3.0 40 12-67 12-51 (87)
65 PF11470 TUG-UBL1: GLUT4 regul 25.7 96 0.0021 19.4 2.9 35 44-80 5-39 (65)
66 PF05041 Pecanex_C: Pecanex pr 25.3 62 0.0013 25.3 2.3 26 11-42 195-220 (232)
67 cd06397 PB1_UP1 Uncharacterize 25.1 2.2E+02 0.0047 19.1 5.4 42 44-89 10-61 (82)
68 PRK14182 bifunctional 5,10-met 24.3 2.8E+02 0.006 22.2 5.9 54 31-97 29-84 (282)
69 PF00763 THF_DHG_CYH: Tetrahyd 24.2 1.7E+02 0.0037 19.7 4.1 55 30-97 27-83 (117)
70 smart00225 BTB Broad-Complex, 24.1 1.4E+02 0.0031 16.9 3.3 52 38-96 4-58 (90)
71 KOG2813 Predicted molecular ch 23.9 57 0.0012 27.4 2.0 54 36-92 274-327 (406)
72 PRK14175 bifunctional 5,10-met 23.5 2.1E+02 0.0046 22.7 5.1 54 31-97 31-86 (286)
73 PRK13277 5-formaminoimidazole- 23.0 25 0.00055 29.1 -0.2 27 29-57 88-115 (366)
74 cd06080 MUM1_like Mutated mela 22.2 1.5E+02 0.0032 19.4 3.4 42 32-73 28-75 (80)
75 PF07369 DUF1488: Protein of u 21.8 1.8E+02 0.004 18.0 3.7 20 35-55 18-37 (83)
76 PRK14168 bifunctional 5,10-met 21.1 4.3E+02 0.0093 21.2 6.4 53 32-97 33-87 (297)
77 KOG1748 Acyl carrier protein/N 20.7 49 0.0011 23.9 0.9 28 67-94 97-125 (131)
78 cd01615 CIDE_N CIDE_N domain, 20.0 1.6E+02 0.0036 19.3 3.2 34 44-84 12-45 (78)
No 1
>PLN03090 auxin-responsive family protein; Provisional
Probab=100.00 E-value=4.3e-41 Score=231.94 Aligned_cols=95 Identities=52% Similarity=0.848 Sum_probs=86.1
Q ss_pred CccccccchH---HHHHHHHhhhhcccCC------CCcCCCCCeEEEEeecCcceEEEEeccccCchHHHHHHHHHHHhc
Q 040932 1 MGIRLPSMIH---NAKQILKRHNNHALKS------ADQVVPRGHIAVYVGEMERKRFVVPISYLNHPLFADLLNRAEEEF 71 (97)
Q Consensus 1 m~~~~~~~~~---~~k~~l~r~~s~~~~~------~~~~vpkG~~~VyVG~~~~~RfvVp~~~L~hP~F~~LL~~aeEEf 71 (97)
|||+..+++. .+||+|+||.|.++++ .+.+||+||||||||+ +++||+||++|||||.|++||++|||||
T Consensus 1 m~~~k~~ki~~~~~~kq~l~r~~s~~~~~~~~~~~~~~~vpkG~~aVyVG~-~~~RfvVp~~~L~hP~F~~LL~~aeeEf 79 (104)
T PLN03090 1 MAIKKSNKLTQTAMLKQILKRCSSLGKKQGYDEDGLPLDVPKGHFPVYVGE-NRSRYIVPISFLTHPEFQSLLQQAEEEF 79 (104)
T ss_pred CCcccccchhHHHHHHHHHHHHHHhcccCCcccccCCCCCCCCcEEEEECC-CCEEEEEEHHHcCCHHHHHHHHHHHHHh
Confidence 8888777432 7799999999987643 4568999999999998 8999999999999999999999999999
Q ss_pred CCccCCCceeeeccHHHHHHHHhhcC
Q 040932 72 GFNHPMGGLTIPCKEDAFIDLTSRLH 97 (97)
Q Consensus 72 G~~~~~G~L~IPC~~~~F~~vl~~l~ 97 (97)
||+|+ |+|+|||+++.|++++|+|+
T Consensus 80 Gf~~~-G~L~IPC~~~~Fe~ll~~i~ 104 (104)
T PLN03090 80 GFDHD-MGLTIPCEEVVFRSLTSMIR 104 (104)
T ss_pred CCCCC-CcEEEeCCHHHHHHHHHHhC
Confidence 99998 89999999999999999984
No 2
>PLN03220 uncharacterized protein; Provisional
Probab=100.00 E-value=9.4e-40 Score=225.48 Aligned_cols=94 Identities=61% Similarity=1.075 Sum_probs=84.7
Q ss_pred CccccccchHHHHHHHHhhhhcccCC-----CCcCCCCCeEEEEeec---CcceEEEEeccccCchHHHHHHHHHHHhcC
Q 040932 1 MGIRLPSMIHNAKQILKRHNNHALKS-----ADQVVPRGHIAVYVGE---MERKRFVVPISYLNHPLFADLLNRAEEEFG 72 (97)
Q Consensus 1 m~~~~~~~~~~~k~~l~r~~s~~~~~-----~~~~vpkG~~~VyVG~---~~~~RfvVp~~~L~hP~F~~LL~~aeEEfG 72 (97)
||+++++|..+.||+|+|++ .+++. .+.+|||||||||||+ ++++||+||++|||||.|++||++||||||
T Consensus 1 ~~~~~~~~~~~~k~~~~~~~-~~~~~~~~~~~~~~VPkGh~aVyVGe~~~~e~kRFVVPv~yL~hP~F~~LL~~AeEEfG 79 (105)
T PLN03220 1 MGLSRFAISNATKQILKLNS-LANRNRTSSSSSDHVPKGHVAVYVGEQIEMEKKRFVVPISFLNHPSFKEFLSRAEEEFG 79 (105)
T ss_pred CCcchhhhHHHHHHHHHHHh-hcccccccccccCCCCCCeEEEEECCCCCccceEEEEEHHHcCChHHHHHHHHHHHHhC
Confidence 89999999988899999998 44433 5679999999999997 258999999999999999999999999999
Q ss_pred CccCCCceeeeccHHHHHHHHhh
Q 040932 73 FNHPMGGLTIPCKEDAFIDLTSR 95 (97)
Q Consensus 73 ~~~~~G~L~IPC~~~~F~~vl~~ 95 (97)
|+|++|+|+|||+++.|+++++.
T Consensus 80 f~~~~G~L~IPCd~~~F~~ll~s 102 (105)
T PLN03220 80 FNHPMGGLTIPCREEVFLDLIAS 102 (105)
T ss_pred CCCCCCCEEeeCCHHHHHHHHHh
Confidence 99966999999999999999864
No 3
>PF02519 Auxin_inducible: Auxin responsive protein; InterPro: IPR003676 This family consists of the protein products of a gene cluster that encodes a group of auxin-regulated RNAs (small auxin up RNAs, SAURs) []. Proteins from this ARG7 auxin responsive genes family have no identified functional role [].
Probab=100.00 E-value=3.5e-36 Score=205.23 Aligned_cols=68 Identities=63% Similarity=1.086 Sum_probs=65.3
Q ss_pred CcCCCCCeEEEEeecCcceEEEEeccccCchHHHHHHHHHHHhcCCccCCCceeeeccHHHHHHHHhhcC
Q 040932 28 DQVVPRGHIAVYVGEMERKRFVVPISYLNHPLFADLLNRAEEEFGFNHPMGGLTIPCKEDAFIDLTSRLH 97 (97)
Q Consensus 28 ~~~vpkG~~~VyVG~~~~~RfvVp~~~L~hP~F~~LL~~aeEEfG~~~~~G~L~IPC~~~~F~~vl~~l~ 97 (97)
..++|+||||||||+ +++||+||++|||||.|++||++|||||||+++ |+|+|||+++.|++++|+|.
T Consensus 33 ~~~vp~G~~~VyVG~-~~~Rfvvp~~~L~hp~f~~LL~~aeeEfG~~~~-G~l~iPC~~~~Fe~~l~~le 100 (100)
T PF02519_consen 33 ESDVPKGHFAVYVGE-ERRRFVVPVSYLNHPLFQELLEQAEEEFGFDQD-GPLTIPCDVVLFEHLLWLLE 100 (100)
T ss_pred cCCCCCCeEEEEeCc-cceEEEechHHcCchhHHHHHHHHhhhcCcCCC-CcEEeeCCHHHHHHHHHHhC
Confidence 378999999999998 999999999999999999999999999999997 99999999999999999974
No 4
>PLN03219 uncharacterized protein; Provisional
Probab=100.00 E-value=3.4e-35 Score=203.67 Aligned_cols=69 Identities=70% Similarity=1.288 Sum_probs=64.4
Q ss_pred CCcCCCCCeEEEEeec-CcceEEEEeccccCchHHHHHHHHHHHhcCCccCCCceeeeccHHHHHHHHhh
Q 040932 27 ADQVVPRGHIAVYVGE-MERKRFVVPISYLNHPLFADLLNRAEEEFGFNHPMGGLTIPCKEDAFIDLTSR 95 (97)
Q Consensus 27 ~~~~vpkG~~~VyVG~-~~~~RfvVp~~~L~hP~F~~LL~~aeEEfG~~~~~G~L~IPC~~~~F~~vl~~ 95 (97)
.+.+|||||||||||+ ++++||+||++|||||.|++||++|||||||+|++|+|+|||+++.|+++|++
T Consensus 35 ~~~~vpkGh~aVYVG~~~E~kRFvVPi~yL~hP~F~~LL~~AeEEfGf~~~~G~L~IPCd~~~F~~ll~~ 104 (108)
T PLN03219 35 TSGLVPKGHVAVYVGEQMEKKRFVVPISYLNHPLFREFLNRAEEECGFHHSMGGLTIPCREESFLHLITS 104 (108)
T ss_pred CCCCCCCCeEEEEECCCCCceEEEEEHHHcCChHHHHHHHHHHHHhCCCCCCCCEEEeCCHHHHHHHHHh
Confidence 3468999999999998 46999999999999999999999999999999866999999999999999975
No 5
>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. The Kv family can be divided into several subfamilies on the basis of sequence similarity and function. Four of these subfamilies, Kv1 (Shaker), Kv2 (Shab), Kv3 (Shaw) and Kv4 (Shal), consist of pore-forming alpha subunits that associate with different types of beta subunit. Each alpha subunit comprises six hydrophobic TM domains with a P-domain between the fifth and sixth, which partially resides in the membrane. The fourth TM domain has positively charged residues at every third residue and acts as a voltage sensor, which triggers the conformational change that opens the channel pore in response to a displacement in membrane potential []. More recently, 4 new electrically-silent alpha subunits have been cloned: Kv5 (KCNF), Kv6 (KCNG), Kv8 and Kv9 (KCNS). These subunits do not themselves possess any functional activity, but appear to form heteromeric channels with Kv2 subunits, and thus modulate Shab channel activity []. When highly expressed, they inhibit channel activity, but at lower levels show more specific modulatory actions. The N-terminal, cytoplasmic tetramerization domain (T1) of voltage-gated potassium channels encodes molecular determinants for subfamily-specific assembly of alpha-subunits into functional tetrameric channels []. This domain is found in a subset of a larger group of proteins that contain the BTB/POZ domain.; GO: 0005249 voltage-gated potassium channel activity, 0006813 potassium ion transport, 0008076 voltage-gated potassium channel complex, 0016020 membrane; PDB: 1NN7_A 3KVT_A 1EXB_E 1QDV_A 1DSX_E 1QDW_F 3LUT_B 3LNM_B 2A79_B 3DRY_C ....
Probab=86.69 E-value=0.71 Score=29.54 Aligned_cols=56 Identities=23% Similarity=0.294 Sum_probs=40.7
Q ss_pred EEEeecCcceEEEEeccccC-ch--HHHHHHHHHHHhcCCccCCCceeeeccHHHHHHHHhhc
Q 040932 37 AVYVGEMERKRFVVPISYLN-HP--LFADLLNRAEEEFGFNHPMGGLTIPCKEDAFIDLTSRL 96 (97)
Q Consensus 37 ~VyVG~~~~~RfvVp~~~L~-hP--~F~~LL~~aeEEfG~~~~~G~L~IPC~~~~F~~vl~~l 96 (97)
.+=||. ++|.++.+.|. +| .|..+++...... .+.+.|.+-|-++...|++|+..|
T Consensus 2 ~lNVGG---~~f~~~~~tL~~~~~s~l~~~~~~~~~~~-~~~~~~~~fiDRdp~~F~~IL~yl 60 (94)
T PF02214_consen 2 RLNVGG---TIFETSRSTLTRYPDSLLARLFSGERSDD-YDDDDGEYFIDRDPELFEYILNYL 60 (94)
T ss_dssp EEEETT---EEEEEEHHHHHTSTTSTTTSHHHTGHGGG-EETTTTEEEESS-HHHHHHHHHHH
T ss_pred EEEECC---EEEEEcHHHHhhCCCChhhhHHhhccccc-cCCccceEEeccChhhhhHHHHHH
Confidence 345775 89999999887 54 6888888652222 222348999999999999999765
No 6
>PF02100 ODC_AZ: Ornithine decarboxylase antizyme; InterPro: IPR002993 Ornithine decarboxylase antizyme (ODC-AZ) [] binds to, and destabilises, ornithine decarboxylase (ODC), a key enzyme in polyamine synthesis. ODC is then rapidly degraded. The expression of ODC-AZ requires programmed, ribosomal frameshifting which is modulated according to the cellular concentration of polyamines. High levels of polyamines induce a +1 ribosomal frameshift in the translation of mRNA for the antizyme leading to the expression of a full-length protein. At least two forms of ODC-AZ exist in mammals [] and the protein has been found in Drosophila (protein Gutfeeling).; GO: 0004857 enzyme inhibitor activity, 0008073 ornithine decarboxylase inhibitor activity; PDB: 1ZO0_A.
Probab=85.78 E-value=1.1 Score=30.66 Aligned_cols=51 Identities=31% Similarity=0.397 Sum_probs=27.8
Q ss_pred cceEEE-EeccccCc---hHHHHHHHHHHHhcCCccCCCceeeeccHHHHHHHHhhc
Q 040932 44 ERKRFV-VPISYLNH---PLFADLLNRAEEEFGFNHPMGGLTIPCKEDAFIDLTSRL 96 (97)
Q Consensus 44 ~~~Rfv-Vp~~~L~h---P~F~~LL~~aeEEfG~~~~~G~L~IPC~~~~F~~vl~~l 96 (97)
++.=|| +|-..+.+ ..|.+||+.|||.+|.++ -.++++=+-.....++..|
T Consensus 23 ~~~L~V~ip~~~~~~~~K~~lvaLLElAee~L~c~~--vvic~~k~~~d~~~Llr~l 77 (108)
T PF02100_consen 23 ERTLFVFIPSSALGQGSKESLVALLELAEEKLGCSH--VVICLDKNRPDRASLLRTL 77 (108)
T ss_dssp TTEEEEE-SS---SS--SHHHHHHHHHHHHHH------EEEEE---SS-HHHHHHHH
T ss_pred CCEEEEEECCcccccccHHHHHHHHHHhcCcCCCCE--EEEEEECCchhHHHhhhhc
Confidence 566777 56555444 459999999999999886 4777776655555555443
No 7
>PRK02899 adaptor protein; Provisional
Probab=82.10 E-value=1.3 Score=33.25 Aligned_cols=23 Identities=35% Similarity=0.817 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHhcCCccCCCceee
Q 040932 59 LFADLLNRAEEEFGFNHPMGGLTI 82 (97)
Q Consensus 59 ~F~~LL~~aeEEfG~~~~~G~L~I 82 (97)
.|.++|++|..|+||.-+ |||+|
T Consensus 40 lF~~mm~Ea~~e~~F~~~-~pl~~ 62 (197)
T PRK02899 40 LFRDMMQEANKELGFEAD-GPIAV 62 (197)
T ss_pred HHHHHHHHhhhccCcccC-CeEEE
Confidence 477779999999999987 89986
No 8
>smart00666 PB1 PB1 domain. Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.
Probab=79.46 E-value=6.1 Score=24.41 Aligned_cols=48 Identities=23% Similarity=0.415 Sum_probs=34.8
Q ss_pred eecCcceEEEEeccccCchHHHHHHHHHHHhcCCc----------cCCCceeeeccHHHHHHHH
Q 040932 40 VGEMERKRFVVPISYLNHPLFADLLNRAEEEFGFN----------HPMGGLTIPCKEDAFIDLT 93 (97)
Q Consensus 40 VG~~~~~RfvVp~~~L~hP~F~~LL~~aeEEfG~~----------~~~G~L~IPC~~~~F~~vl 93 (97)
-|+ +.+||.+|- ...|.+|..+..+-|+.. .++..++|.++. .+...+
T Consensus 8 ~~~-~~~~~~~~~----~~s~~dL~~~i~~~~~~~~~~~~l~Y~Dedgd~v~l~sd~-Dl~~a~ 65 (81)
T smart00666 8 YGG-ETRRLSVPR----DISFEDLRSKVAKRFGLDNQSFTLKYQDEDGDLVSLTSDE-DLEEAI 65 (81)
T ss_pred ECC-EEEEEEECC----CCCHHHHHHHHHHHhCCCCCCeEEEEECCCCCEEEecCHH-HHHHHH
Confidence 365 789999985 778999999999988874 233467888875 444443
No 9
>PRK02315 adaptor protein; Provisional
Probab=76.87 E-value=2 Score=32.86 Aligned_cols=24 Identities=25% Similarity=0.469 Sum_probs=21.5
Q ss_pred hHHHHHHHHHHHhcCCccCCCceee
Q 040932 58 PLFADLLNRAEEEFGFNHPMGGLTI 82 (97)
Q Consensus 58 P~F~~LL~~aeEEfG~~~~~G~L~I 82 (97)
-.|.++|++|..|+||..+ |||+|
T Consensus 39 ~fF~~mm~Ea~~e~~F~~~-~pl~~ 62 (233)
T PRK02315 39 EFFYSMMDEVDEEDDFADE-GPLWF 62 (233)
T ss_pred HHHHHHHHHhccccCcccC-CeEEE
Confidence 4599999999999999986 99986
No 10
>PF05389 MecA: Negative regulator of genetic competence (MecA); InterPro: IPR008681 Competence is the ability of a cell to take up exogenous DNA from its environment, resulting in transformation. It is widespread among bacteria and is probably an important mechanism for the horizontal transfer of genes. Cells that take up DNA inevitably acquire the nucleotides the DNA consists of, and, because nucleotides are needed for DNA and RNA synthesis and are expensive to synthesise, these may make a significant contribution to the cell's energy budget []. The lateral gene transfer caused by competence also contributes to the genetic diversity that makes evolution possible. DNA usually becomes available by the death and lysis of other cells. Competent bacteria use components of extracellular filaments called type 4 pili to create pores in their membranes and pull DNA through the pores into the cytoplasm. This process, including the development of competence and the expression of the uptake machinery, is regulated in response to cell-cell signalling and/or nutritional conditions []. This family contains several bacterial MecA proteins. In complex media competence development is poor, and there is little or no expression of late competence genes. Overexpression of MecA inhibits comG transcription [, , ]. MecA enables the recognition and targeting of unfolded and aggregated proteins to the ClpC protease or to other proteins involved in proteolysis. Acts negatively in the development of competence by binding ComK and recruiting it to the ClpCP protease. When overexpressed, inhibits sporulation. Also involved in Spx degradation by ClpC. ; PDB: 3JTP_C 2Y1R_O 3PXI_c 3PXG_b 3JTO_D 3JTN_A.
Probab=69.86 E-value=1.5 Score=32.79 Aligned_cols=25 Identities=40% Similarity=0.733 Sum_probs=0.0
Q ss_pred chHHHHHHHHHHHhcCCccCCCceee
Q 040932 57 HPLFADLLNRAEEEFGFNHPMGGLTI 82 (97)
Q Consensus 57 hP~F~~LL~~aeEEfG~~~~~G~L~I 82 (97)
+-.|.++|++|.+|+||..+ |+|++
T Consensus 38 e~fF~~ileea~~e~~F~~~-~~l~~ 62 (220)
T PF05389_consen 38 EEFFYSILEEADEEHGFEND-GPLTF 62 (220)
T ss_dssp --------------------------
T ss_pred HHHHHHHHHHhccccCcccC-CeEEE
Confidence 34599999999999999986 88875
No 11
>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=62.16 E-value=33 Score=20.83 Aligned_cols=52 Identities=29% Similarity=0.406 Sum_probs=36.0
Q ss_pred EEeecCcceEEEEeccccCchHHHHHHHHHHHhcCCc----------cCCCceeeeccHHHHHHHHh
Q 040932 38 VYVGEMERKRFVVPISYLNHPLFADLLNRAEEEFGFN----------HPMGGLTIPCKEDAFIDLTS 94 (97)
Q Consensus 38 VyVG~~~~~RfvVp~~~L~hP~F~~LL~~aeEEfG~~----------~~~G~L~IPC~~~~F~~vl~ 94 (97)
++-++ +.+||.+|- .++.|.+|..+-.+-|+.. .++--++|.++ +.++..+.
T Consensus 5 ~~~~~-~~~~~~~~~---~~~s~~~L~~~i~~~~~~~~~~~~l~y~D~e~d~v~l~sd-~Dl~~a~~ 66 (81)
T cd05992 5 VKYGG-EIRRFVVVS---RSISFEDLRSKIAEKFGLDAVSFKLKYPDEDGDLVTISSD-EDLEEAIE 66 (81)
T ss_pred EEecC-CCEEEEEec---CCCCHHHHHHHHHHHhCCCCCcEEEEeeCCCCCEEEeCCH-HHHHHHHH
Confidence 34443 689999997 7889999999999988874 12234666666 45555444
No 12
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=51.59 E-value=38 Score=27.18 Aligned_cols=54 Identities=19% Similarity=0.343 Sum_probs=39.8
Q ss_pred CCCCeEEEEeecCcceEEEEeccccCchHHHHHHHHHHHhcCCccCCCceeee--ccHHHHHHHHhhcC
Q 040932 31 VPRGHIAVYVGEMERKRFVVPISYLNHPLFADLLNRAEEEFGFNHPMGGLTIP--CKEDAFIDLTSRLH 97 (97)
Q Consensus 31 vpkG~~~VyVG~~~~~RfvVp~~~L~hP~F~~LL~~aeEEfG~~~~~G~L~IP--C~~~~F~~vl~~l~ 97 (97)
.+.+...|.||+ +. ..-...+--.+++||+|++.. .+.+| ++.++|+..+..||
T Consensus 31 ~~p~LaiI~vgd-d~----------as~~Yv~~k~k~a~~~Gi~~~--~~~l~~~~~~~el~~~I~~lN 86 (297)
T PRK14186 31 RPPGLAVLRVGD-DP----------ASAVYVRNKEKACARVGIASF--GKHLPADTSQAEVEALIAQLN 86 (297)
T ss_pred CCceEEEEEeCC-Ch----------HHHHHHHHHHHHHHHcCCEEE--EEECCCCCCHHHHHHHHHHHh
Confidence 345788999997 21 233456677788999999875 46665 88889999998875
No 13
>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=50.64 E-value=43 Score=26.72 Aligned_cols=53 Identities=17% Similarity=0.285 Sum_probs=40.2
Q ss_pred CCCeEEEEeecCcceEEEEeccccCchHHHHHHHHHHHhcCCccCCCceeee--ccHHHHHHHHhhcC
Q 040932 32 PRGHIAVYVGEMERKRFVVPISYLNHPLFADLLNRAEEEFGFNHPMGGLTIP--CKEDAFIDLTSRLH 97 (97)
Q Consensus 32 pkG~~~VyVG~~~~~RfvVp~~~L~hP~F~~LL~~aeEEfG~~~~~G~L~IP--C~~~~F~~vl~~l~ 97 (97)
+.+...|+||+ +. ..-.....-.+++||.|++.. .+.+| ++.++|...+..||
T Consensus 32 ~P~LaiI~vg~-d~----------as~~Yv~~k~k~a~~~Gi~~~--~~~l~~~~t~~el~~~I~~lN 86 (284)
T PRK14193 32 TPGLGTVLVGD-DP----------GSQAYVRGKHRDCAEVGITSI--RRDLPADATQEELNAVIDELN 86 (284)
T ss_pred CceEEEEEeCC-CH----------HHHHHHHHHHHHHHHcCCEEE--EEECCCCCCHHHHHHHHHHHh
Confidence 44888899998 21 123456777888999999875 57778 88999999988875
No 14
>cd06410 PB1_UP2 Uncharacterized protein 2. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=50.34 E-value=42 Score=22.57 Aligned_cols=46 Identities=28% Similarity=0.354 Sum_probs=32.9
Q ss_pred EEEeecCcceEEEEeccccCchHHHHHHHHHHHhcCCccC------------CCceeeeccHH
Q 040932 37 AVYVGEMERKRFVVPISYLNHPLFADLLNRAEEEFGFNHP------------MGGLTIPCKED 87 (97)
Q Consensus 37 ~VyVG~~~~~RfvVp~~~L~hP~F~~LL~~aeEEfG~~~~------------~G~L~IPC~~~ 87 (97)
.=|||. +.+--.|+-+ ..|.+|..+..+.++..++ ++-+.|.||.+
T Consensus 17 l~Y~GG-~tr~i~V~r~----~s~~el~~kl~~~~~~~~~~~lky~Lp~edld~Lisv~~DeD 74 (97)
T cd06410 17 LRYVGG-ETRIVSVDRS----ISFKELVSKLSELFGAGVVVTLKYQLPDEDLDALISVSNDED 74 (97)
T ss_pred EEEcCC-ceEEEEEcCC----CCHHHHHHHHHHHhCCCCceEEEEEcCCCCcceeEEecCcHH
Confidence 479996 7777778865 4677888888888776651 14567888864
No 15
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=50.02 E-value=71 Score=25.49 Aligned_cols=53 Identities=25% Similarity=0.431 Sum_probs=39.6
Q ss_pred CCCeEEEEeecCcceEEEEeccccCchHHHHHHHHHHHhcCCccCCCceeee--ccHHHHHHHHhhcC
Q 040932 32 PRGHIAVYVGEMERKRFVVPISYLNHPLFADLLNRAEEEFGFNHPMGGLTIP--CKEDAFIDLTSRLH 97 (97)
Q Consensus 32 pkG~~~VyVG~~~~~RfvVp~~~L~hP~F~~LL~~aeEEfG~~~~~G~L~IP--C~~~~F~~vl~~l~ 97 (97)
..+...|.||+ +. ..-...+--.++.+|.|++.. .+.+| ++.++|+..+..||
T Consensus 33 ~P~Laii~vg~-d~----------as~~Yv~~k~k~a~~~Gi~~~--~~~l~~~~s~~el~~~I~~lN 87 (285)
T PRK10792 33 APGLAVVLVGS-DP----------ASQVYVASKRKACEEVGFVSR--SYDLPETTSEAELLALIDELN 87 (285)
T ss_pred CceEEEEEeCC-CH----------HHHHHHHHHHHHHHHcCCEEE--EEECCCCCCHHHHHHHHHHHh
Confidence 34888899997 21 123456677788999999865 57777 88899999998875
No 16
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=49.48 E-value=82 Score=25.10 Aligned_cols=54 Identities=19% Similarity=0.275 Sum_probs=41.3
Q ss_pred CCCCeEEEEeecCcceEEEEeccccCchHHHHHHHHHHHhcCCccCCCceeee--ccHHHHHHHHhhcC
Q 040932 31 VPRGHIAVYVGEMERKRFVVPISYLNHPLFADLLNRAEEEFGFNHPMGGLTIP--CKEDAFIDLTSRLH 97 (97)
Q Consensus 31 vpkG~~~VyVG~~~~~RfvVp~~~L~hP~F~~LL~~aeEEfG~~~~~G~L~IP--C~~~~F~~vl~~l~ 97 (97)
.+.+...|.||+ +. ..-...+--.++.||.|++.. .+.+| ++.++|+..+..||
T Consensus 31 ~~p~Laii~vg~-d~----------as~~Yv~~k~k~~~~~Gi~~~--~~~l~~~~~~~~l~~~I~~lN 86 (285)
T PRK14189 31 HQPGLAVILVGD-NP----------ASQVYVRNKVKACEDNGFHSL--KDRYPADLSEAELLARIDELN 86 (285)
T ss_pred CCCeEEEEEeCC-Cc----------hHHHHHHHHHHHHHHcCCEEE--EEECCCCCCHHHHHHHHHHHc
Confidence 345888999997 22 234456777888999999875 57788 88999999998875
No 17
>PRK10308 3-methyl-adenine DNA glycosylase II; Provisional
Probab=49.43 E-value=61 Score=25.42 Aligned_cols=63 Identities=24% Similarity=0.318 Sum_probs=42.7
Q ss_pred CCeEEEEeecCcceEEEEeccccCchHHHHHHHHHHHhcCCccC--------------CCceeeeccHHHHHHHHhhc
Q 040932 33 RGHIAVYVGEMERKRFVVPISYLNHPLFADLLNRAEEEFGFNHP--------------MGGLTIPCKEDAFIDLTSRL 96 (97)
Q Consensus 33 kG~~~VyVG~~~~~RfvVp~~~L~hP~F~~LL~~aeEEfG~~~~--------------~G~L~IPC~~~~F~~vl~~l 96 (97)
.|.+.|.-.+ ...++.+.++.-.-+....++.....=||.+.+ .-+|+||...+.||.+++.|
T Consensus 45 ~~~~~v~~~~-~~~~l~~~~~~~~~~~~~~~~~~vrr~fdLd~d~~~i~~~L~~~~~~~~GlR~p~~~d~fE~lv~aI 121 (283)
T PRK10308 45 RGVVTVIPDI-ARHTLHINLSAGLEPVAAECLAKMSRLFDLQCNPQIVNGALGKLGAARPGLRLPGSVDAFEQGVRAI 121 (283)
T ss_pred cEEEEEEEcC-CCceEEEEEcCCccccHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCCcCCCCCCHHHHHHHHH
Confidence 4555555544 445666666654345566777777777777765 24689999999999888764
No 18
>PF08861 DUF1828: Domain of unknown function DUF1828; InterPro: IPR014960 These proteins are functionally uncharacterised.
Probab=49.26 E-value=49 Score=21.27 Aligned_cols=39 Identities=26% Similarity=0.311 Sum_probs=34.0
Q ss_pred chHHHHHHHHHHHhcCCccCCCceeeeccHHHHHHHHhh
Q 040932 57 HPLFADLLNRAEEEFGFNHPMGGLTIPCKEDAFIDLTSR 95 (97)
Q Consensus 57 hP~F~~LL~~aeEEfG~~~~~G~L~IPC~~~~F~~vl~~ 95 (97)
.|.=+++|+..-..||+.-++|.|.+.++.+.|-....+
T Consensus 44 s~~R~~~l~~il~~~gv~~~~~el~~~~~~~~~~~~~~~ 82 (90)
T PF08861_consen 44 SKKRKKILNSILNGFGVELDEGELFIKTSEENFPQAKHR 82 (90)
T ss_pred chHHHHHHHHHHHHcCccccCCEEEEEeCHHHHHHHHHH
Confidence 677789999999999999888999999999988776554
No 19
>PF02209 VHP: Villin headpiece domain; InterPro: IPR003128 Villin is an F-actin bundling protein involved in the maintenance of the microvilli of the absorptive epithelia. The villin-type "headpiece" domain is a modular motif found at the extreme C terminus of larger "core" domains in over 25 cytoskeletal proteins in plants and animals, often in assocation with the Gelsolin repeat. Although the headpiece is classified as an F-actin-binding domain, it has been shown that not all headpiece domains are intrinsically F-actin-binding motifs, surface charge distribution may be an important element for F-actin recognition []. An autonomously folding, 35 residue, thermostable subdomain (HP36) of the full-length 76 amino acid residue villin headpiece, is the smallest known example of a cooperatively folded domain of a naturally occurring protein. The structure of HP36, as determined by NMR spectroscopy, consists of three short helices surrounding a tightly packed hydrophobic core []. ; GO: 0003779 actin binding, 0007010 cytoskeleton organization; PDB: 1ZV6_A 1QZP_A 1UND_A 2PPZ_A 3TJW_B 1YU8_X 2JM0_A 1WY4_A 3MYC_A 1YU5_X ....
Probab=48.30 E-value=8.6 Score=21.85 Aligned_cols=19 Identities=32% Similarity=0.532 Sum_probs=15.2
Q ss_pred ccCchHHHHHHHHHHHhcC
Q 040932 54 YLNHPLFADLLNRAEEEFG 72 (97)
Q Consensus 54 ~L~hP~F~~LL~~aeEEfG 72 (97)
||+.-.|+++..++.+||.
T Consensus 1 YLsd~dF~~vFgm~~~eF~ 19 (36)
T PF02209_consen 1 YLSDEDFEKVFGMSREEFY 19 (36)
T ss_dssp GS-HHHHHHHHSS-HHHHH
T ss_pred CcCHHHHHHHHCCCHHHHH
Confidence 7899999999999999984
No 20
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=47.84 E-value=84 Score=25.00 Aligned_cols=52 Identities=12% Similarity=0.302 Sum_probs=38.6
Q ss_pred CCeEEEEeecCcceEEEEeccccCchHHHHHHHHHHHhcCCccCCCceeee--ccHHHHHHHHhhcC
Q 040932 33 RGHIAVYVGEMERKRFVVPISYLNHPLFADLLNRAEEEFGFNHPMGGLTIP--CKEDAFIDLTSRLH 97 (97)
Q Consensus 33 kG~~~VyVG~~~~~RfvVp~~~L~hP~F~~LL~~aeEEfG~~~~~G~L~IP--C~~~~F~~vl~~l~ 97 (97)
.+...|.||+ +. ..-.....-.+++||.|.... .+.+| |+.+++...+..||
T Consensus 33 P~Laii~vg~-d~----------as~~Yv~~k~k~a~~~Gi~~~--~~~l~~~~~~~el~~~I~~lN 86 (278)
T PRK14172 33 PKIASILVGN-DG----------GSIYYMNNQEKVANSLGIDFK--KIKLDESISEEDLINEIEELN 86 (278)
T ss_pred ceEEEEEeCC-CH----------HHHHHHHHHHHHHHHcCCEEE--EEECCCCCCHHHHHHHHHHHh
Confidence 3788899998 21 123345566788999999875 57788 88899999888875
No 21
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=47.45 E-value=90 Score=24.92 Aligned_cols=52 Identities=10% Similarity=0.268 Sum_probs=38.8
Q ss_pred CCeEEEEeecCcceEEEEeccccCchHHHHHHHHHHHhcCCccCCCceeee--ccHHHHHHHHhhcC
Q 040932 33 RGHIAVYVGEMERKRFVVPISYLNHPLFADLLNRAEEEFGFNHPMGGLTIP--CKEDAFIDLTSRLH 97 (97)
Q Consensus 33 kG~~~VyVG~~~~~RfvVp~~~L~hP~F~~LL~~aeEEfG~~~~~G~L~IP--C~~~~F~~vl~~l~ 97 (97)
.+...|.||+ +. ..-...+--.++.+++|+..+ .+.+| |+.++|+..+..||
T Consensus 34 P~Laii~vg~-d~----------as~~Yv~~k~k~~~~~Gi~~~--~~~l~~~~s~~el~~~I~~lN 87 (284)
T PRK14177 34 PKLATILVGN-NP----------ASETYVSMKVKACHKVGMGSE--MIRLKEQTTTEELLGVIDKLN 87 (284)
T ss_pred CeEEEEEeCC-Ch----------hHHHHHHHHHHHHHHcCCEEE--EEECCCCCCHHHHHHHHHHHh
Confidence 3788999998 21 123345667788999999875 57777 88999999988875
No 22
>smart00153 VHP Villin headpiece domain.
Probab=46.81 E-value=10 Score=21.39 Aligned_cols=19 Identities=32% Similarity=0.562 Sum_probs=17.0
Q ss_pred ccCchHHHHHHHHHHHhcC
Q 040932 54 YLNHPLFADLLNRAEEEFG 72 (97)
Q Consensus 54 ~L~hP~F~~LL~~aeEEfG 72 (97)
||+.-.|+.++.++.+||-
T Consensus 1 yLsdeeF~~vfgmsr~eF~ 19 (36)
T smart00153 1 YLSDEDFEEVFGMTREEFY 19 (36)
T ss_pred CCCHHHHHHHHCCCHHHHH
Confidence 7889999999999999884
No 23
>PF06544 DUF1115: Protein of unknown function (DUF1115); InterPro: IPR010541 This entry represents the C terminus of several eukaryotic RWD domain-containing proteins of unknown function.
Probab=45.99 E-value=70 Score=21.90 Aligned_cols=27 Identities=15% Similarity=0.274 Sum_probs=22.9
Q ss_pred EEEeccccCchHHHHHHHHHHHhcCCc
Q 040932 48 FVVPISYLNHPLFADLLNRAEEEFGFN 74 (97)
Q Consensus 48 fvVp~~~L~hP~F~~LL~~aeEEfG~~ 74 (97)
++-.+..|.||.-+.-++.-++|++..
T Consensus 2 ~~~~I~~L~~p~~R~kI~~nA~ql~Lt 28 (128)
T PF06544_consen 2 YVHHIKSLSNPKKRFKIDKNAKQLHLT 28 (128)
T ss_pred EEEEeCcccCHHHHHHHHHHHHHhCCe
Confidence 355678899999999999999999875
No 24
>PF12062 HSNSD: heparan sulfate-N-deacetylase; InterPro: IPR021930 This family of proteins is are heparan sulphate N-deacetylase enzymes. This protein is found in eukaryotes. This enzyme is often found associated with PF00685 from PFAM. ; GO: 0015016 [heparan sulfate]-glucosamine N-sulfotransferase activity, 0016787 hydrolase activity
Probab=44.24 E-value=18 Score=31.15 Aligned_cols=43 Identities=26% Similarity=0.548 Sum_probs=37.0
Q ss_pred CCC-CCeEEEEeecCcceEEEEec-----cccCchH-HHHHHHHHHHhcCC
Q 040932 30 VVP-RGHIAVYVGEMERKRFVVPI-----SYLNHPL-FADLLNRAEEEFGF 73 (97)
Q Consensus 30 ~vp-kG~~~VyVG~~~~~RfvVp~-----~~L~hP~-F~~LL~~aeEEfG~ 73 (97)
-+| ||.+|+++-. ++.||-|-+ .|+|-+. -++||++=..|||-
T Consensus 92 i~~~kg~lP~LT~~-~kGRy~lII~ENl~kYlnld~wNR~LLdkYC~ey~V 141 (487)
T PF12062_consen 92 IASGKGDLPVLTDN-DKGRYSLIIFENLLKYLNLDSWNRELLDKYCREYGV 141 (487)
T ss_pred EccCCCCCCccccC-CCCcEEEEEehhHHHHcCChHHHHHHHHHHhHccCc
Confidence 444 6899999976 788998886 8999998 89999999999974
No 25
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=42.69 E-value=1.2e+02 Score=24.20 Aligned_cols=53 Identities=19% Similarity=0.431 Sum_probs=39.9
Q ss_pred CCCeEEEEeecCcceEEEEeccccCchHHHHHHHHHHHhcCCccCCCceeee--ccHHHHHHHHhhcC
Q 040932 32 PRGHIAVYVGEMERKRFVVPISYLNHPLFADLLNRAEEEFGFNHPMGGLTIP--CKEDAFIDLTSRLH 97 (97)
Q Consensus 32 pkG~~~VyVG~~~~~RfvVp~~~L~hP~F~~LL~~aeEEfG~~~~~G~L~IP--C~~~~F~~vl~~l~ 97 (97)
+.+...|.||+ +. ..-....--.+++|+.|+... .+.+| ++.++|...+..||
T Consensus 32 ~P~Laii~vg~-d~----------as~~Yv~~k~k~~~~~Gi~~~--~~~l~~~~~~~~l~~~I~~lN 86 (284)
T PRK14179 32 VPGLVVILVGD-NP----------ASQVYVRNKERSALAAGFKSE--VVRLPETISQEELLDLIERYN 86 (284)
T ss_pred CceEEEEEeCC-Ch----------hHHHHHHHHHHHHHHcCCEEE--EEECCCCCCHHHHHHHHHHHh
Confidence 34888999997 21 123456667788999999875 57788 88999999998875
No 26
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=42.26 E-value=70 Score=25.54 Aligned_cols=54 Identities=22% Similarity=0.397 Sum_probs=39.7
Q ss_pred CCCCeEEEEeecCcceEEEEeccccCchHHHHHHHHHHHhcCCccCCCceeee--ccHHHHHHHHhhcC
Q 040932 31 VPRGHIAVYVGEMERKRFVVPISYLNHPLFADLLNRAEEEFGFNHPMGGLTIP--CKEDAFIDLTSRLH 97 (97)
Q Consensus 31 vpkG~~~VyVG~~~~~RfvVp~~~L~hP~F~~LL~~aeEEfG~~~~~G~L~IP--C~~~~F~~vl~~l~ 97 (97)
.+.+...|.||+ +. ..-...+--.+++||+|++.. -+.+| ++.++|+..+..||
T Consensus 31 ~~p~La~i~vg~-~~----------~s~~Yv~~k~k~a~~~Gi~~~--~~~l~~~~~~~el~~~i~~lN 86 (296)
T PRK14188 31 VTPGLAVVLVGE-DP----------ASQVYVRSKGKQTKEAGMASF--EHKLPADTSQAELLALIARLN 86 (296)
T ss_pred CCCeEEEEEeCC-Ch----------hHHHHHHHHHHHHHHcCCEEE--EEECCCCCCHHHHHHHHHHHh
Confidence 355888999998 21 123356667788999999865 46666 88899999998875
No 27
>PF11876 DUF3396: Protein of unknown function (DUF3396); InterPro: IPR021815 This family of proteins are functionally uncharacterised. This protein is found in bacteria and viruses. Proteins in this family are typically between 302 to 382 amino acids in length.
Probab=40.70 E-value=26 Score=26.37 Aligned_cols=41 Identities=22% Similarity=0.365 Sum_probs=32.2
Q ss_pred cceEEEEeccccCch--HHHHHHHHHHHhcCCccCCCceeeec
Q 040932 44 ERKRFVVPISYLNHP--LFADLLNRAEEEFGFNHPMGGLTIPC 84 (97)
Q Consensus 44 ~~~RfvVp~~~L~hP--~F~~LL~~aeEEfG~~~~~G~L~IPC 84 (97)
+-=+|.+|++||..+ .|++|+...++++...|.-+++.+-.
T Consensus 23 s~l~f~~P~~~l~~~~~~~~~l~~~~a~~L~~~~G~aGl~~~~ 65 (208)
T PF11876_consen 23 SYLSFSLPLEWLEEGPGHFRALFLELAERLPPSHGYAGLAFNL 65 (208)
T ss_pred cEEEEEeCHHHHhcCcHHHHHHHHHHHHHCCCCeEeeEEEEec
Confidence 346899999999872 49999999999888777656666543
No 28
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....
Probab=40.55 E-value=81 Score=19.57 Aligned_cols=54 Identities=24% Similarity=0.520 Sum_probs=35.9
Q ss_pred EEEEeecCcceEEEEecccc--CchHHHHHHHHHHHhcCCccCCC--ceeee-ccHHHHHHHHhhc
Q 040932 36 IAVYVGEMERKRFVVPISYL--NHPLFADLLNRAEEEFGFNHPMG--GLTIP-CKEDAFIDLTSRL 96 (97)
Q Consensus 36 ~~VyVG~~~~~RfvVp~~~L--~hP~F~~LL~~aeEEfG~~~~~G--~L~IP-C~~~~F~~vl~~l 96 (97)
+.+.||+ .++|-+.-..| ..|.|+.++... +.... + .+.++ |+.+.|+.++..+
T Consensus 13 ~~i~v~d--~~~~~vhk~iL~~~S~~F~~~~~~~----~~~~~-~~~~i~~~~~~~~~~~~~l~~~ 71 (111)
T PF00651_consen 13 VTIRVGD--GKTFYVHKNILAARSPYFRNLFEGS----KFKES-TVPEISLPDVSPEAFEAFLEYM 71 (111)
T ss_dssp EEEEETT--TEEEEE-HHHHHHHBHHHHHHHTTT----TSTTS-SEEEEEETTSCHHHHHHHHHHH
T ss_pred EEEEECC--CEEEeechhhhhccchhhhhccccc----ccccc-cccccccccccccccccccccc
Confidence 3555663 58888888877 568999999888 21222 3 35544 8889999888653
No 29
>PF11834 DUF3354: Domain of unknown function (DUF3354); InterPro: IPR021789 Potassium channels take part in important processes of higher plants, including opening and closing of stomatal pores and leaf movement. Inward rectifying potassium (K(+)in) channels play an important role in turgor regulation and ion uptake in higher plants. All of them comprise, from their N-terminal to their C-terminal ends: a short hydrophilic region, a hydrophobic region structurally analogous and partially homologous to the transmembrane domain of voltage-gated animal channels from the Shaker superfamily, a putative cyclic nucleotide-binding domain, and a conserved C-terminal KHA domain. Between these last two regions, some of them (AKT1, AKT2 and SKT1) contain an ankyrin-repeat domain with six repeats homologous to those of human erythrocyte ankyrin. This entry represents the KHA domain which is unique to plant K(+)in channels. The KHA domain contains two high-homology blocks enriched for hydrophobic and acidic residues, respectively. The KHA domain is essential for interaction of plant K(+)in channels. The KHA domain mediates tetramerization and/or stabilisation of the heteromers [, , ].
Probab=40.24 E-value=25 Score=22.45 Aligned_cols=24 Identities=38% Similarity=0.628 Sum_probs=19.4
Q ss_pred ceEEEEeccccCchHHHHHHHHHHHhcCCc
Q 040932 45 RKRFVVPISYLNHPLFADLLNRAEEEFGFN 74 (97)
Q Consensus 45 ~~RfvVp~~~L~hP~F~~LL~~aeEEfG~~ 74 (97)
.+=..+| -.+++||+.|++.||+.
T Consensus 19 GKvi~lP------~SleeLl~ia~~kfg~~ 42 (69)
T PF11834_consen 19 GKVIWLP------DSLEELLKIASEKFGFS 42 (69)
T ss_pred CEEEEcC------ccHHHHHHHHHHHhCCC
Confidence 4555666 36999999999999996
No 30
>PF12058 DUF3539: Protein of unknown function (DUF3539); InterPro: IPR021926 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 90 amino acids in length. This protein has a conserved NHP sequence motif. ; PDB: 3N5B_B 2XKO_C 2XG8_F.
Probab=40.24 E-value=5.7 Score=27.00 Aligned_cols=10 Identities=60% Similarity=1.095 Sum_probs=7.2
Q ss_pred cccCchHHHH
Q 040932 53 SYLNHPLFAD 62 (97)
Q Consensus 53 ~~L~hP~F~~ 62 (97)
.|||||.|--
T Consensus 4 ~YLNHPtFGl 13 (88)
T PF12058_consen 4 TYLNHPTFGL 13 (88)
T ss_dssp -EEEETTTEE
T ss_pred ccccCCccch
Confidence 5899998843
No 31
>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....
Probab=39.53 E-value=88 Score=19.00 Aligned_cols=45 Identities=31% Similarity=0.476 Sum_probs=30.0
Q ss_pred EEeecCcceE-EEEeccccCchHHHHHHHHHHHhcCCc----------cCCCceeeeccHH
Q 040932 38 VYVGEMERKR-FVVPISYLNHPLFADLLNRAEEEFGFN----------HPMGGLTIPCKED 87 (97)
Q Consensus 38 VyVG~~~~~R-fvVp~~~L~hP~F~~LL~~aeEEfG~~----------~~~G~L~IPC~~~ 87 (97)
++-++ +.+| +.+| ..+.|.+|..+.++.||.. .++-.++|.++.+
T Consensus 6 ~~~~~-~~~~~~~~~----~~~s~~~L~~~i~~~~~~~~~~~~l~Y~D~dgD~V~i~sd~D 61 (84)
T PF00564_consen 6 VRYGG-DIRRIISLP----SDVSFDDLRSKIREKFGLLDEDFQLKYKDEDGDLVTISSDED 61 (84)
T ss_dssp EEETT-EEEEEEEEC----STSHHHHHHHHHHHHHTTSTSSEEEEEEETTSSEEEESSHHH
T ss_pred EEECC-eeEEEEEcC----CCCCHHHHHHHHHHHhCCCCccEEEEeeCCCCCEEEeCCHHH
Confidence 33443 4455 4444 5679999999999999983 3323577887754
No 32
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=38.53 E-value=1.5e+02 Score=23.32 Aligned_cols=54 Identities=9% Similarity=0.210 Sum_probs=38.3
Q ss_pred CCCCeEEEEeecCcceEEEEeccccCchHHHHHHHHHHHhcCCccCCCceee--eccHHHHHHHHhhcC
Q 040932 31 VPRGHIAVYVGEMERKRFVVPISYLNHPLFADLLNRAEEEFGFNHPMGGLTI--PCKEDAFIDLTSRLH 97 (97)
Q Consensus 31 vpkG~~~VyVG~~~~~RfvVp~~~L~hP~F~~LL~~aeEEfG~~~~~G~L~I--PC~~~~F~~vl~~l~ 97 (97)
.+.+...|.||+ +. ..-.....-.++.++.|.+.. -+.+ .|+.+.|+.++..||
T Consensus 32 ~~p~L~~i~vg~-~~----------~s~~Y~~~~~~~~~~~Gi~~~--~~~l~~~~~~~~l~~~i~~Ln 87 (283)
T PRK14192 32 RTPILATILVGD-DP----------ASATYVRMKGNACRRVGMDSL--KVELPQETTTEQLLAKIEELN 87 (283)
T ss_pred CCCeEEEEEeCC-Ch----------hHHHHHHHHHHHHHHcCCeEE--EEECCCCCCHHHHHHHHHHHh
Confidence 345888999997 21 133456777888888998764 4666 478888888887764
No 33
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=37.93 E-value=1.7e+02 Score=23.36 Aligned_cols=53 Identities=11% Similarity=0.212 Sum_probs=38.8
Q ss_pred CCCeEEEEeecCcceEEEEeccccCchHHHHHHHHHHHhcCCccCCCceeee--ccHHHHHHHHhhcC
Q 040932 32 PRGHIAVYVGEMERKRFVVPISYLNHPLFADLLNRAEEEFGFNHPMGGLTIP--CKEDAFIDLTSRLH 97 (97)
Q Consensus 32 pkG~~~VyVG~~~~~RfvVp~~~L~hP~F~~LL~~aeEEfG~~~~~G~L~IP--C~~~~F~~vl~~l~ 97 (97)
+.+...|.||+ +. ..-...+--.+++++.|++.. .+.+| ++.+.+...+..||
T Consensus 32 ~P~LaiI~vg~-d~----------as~~Yv~~k~k~a~~~Gi~~~--~~~l~~~~~~~~l~~~I~~LN 86 (288)
T PRK14171 32 SPKLAIVLVGD-NP----------ASIIYVKNKIKNAHKIGIDTL--LVNLSTTIHTNDLISKINELN 86 (288)
T ss_pred CCeEEEEEeCC-Cc----------cHHHHHHHHHHHHHHcCCEEE--EEECCCCCCHHHHHHHHHHHc
Confidence 34788999998 21 123445666778899999875 57777 88888998888775
No 34
>PF14317 YcxB: YcxB-like protein
Probab=37.85 E-value=74 Score=17.75 Aligned_cols=31 Identities=13% Similarity=0.382 Sum_probs=23.6
Q ss_pred CCCeEEEEeecCcceEEEEeccccCchHHHHHH
Q 040932 32 PRGHIAVYVGEMERKRFVVPISYLNHPLFADLL 64 (97)
Q Consensus 32 pkG~~~VyVG~~~~~RfvVp~~~L~hP~F~~LL 64 (97)
-+.++-+|+++ ..-++||.+.++.-...++.
T Consensus 28 ~~~~~~l~~~~--~~~~~iPk~~f~~~e~~~f~ 58 (62)
T PF14317_consen 28 TKDYFYLYLGK--NQAFIIPKRAFSEEEKEEFR 58 (62)
T ss_pred eCCEEEEEECC--CeEEEEEHHHCCHhHHHHHH
Confidence 46788889986 69999999999854444444
No 35
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=37.39 E-value=1.5e+02 Score=23.67 Aligned_cols=54 Identities=15% Similarity=0.266 Sum_probs=40.0
Q ss_pred CCCCeEEEEeecCcceEEEEeccccCchHHHHHHHHHHHhcCCccCCCceeee--ccHHHHHHHHhhcC
Q 040932 31 VPRGHIAVYVGEMERKRFVVPISYLNHPLFADLLNRAEEEFGFNHPMGGLTIP--CKEDAFIDLTSRLH 97 (97)
Q Consensus 31 vpkG~~~VyVG~~~~~RfvVp~~~L~hP~F~~LL~~aeEEfG~~~~~G~L~IP--C~~~~F~~vl~~l~ 97 (97)
+..+...|.||+ +. ..-.....-.++++++|++.. .+.+| ++.++|...+..||
T Consensus 29 ~~P~Laii~vg~-d~----------as~~Yv~~k~k~a~~~Gi~~~--~~~l~~~~t~~~l~~~I~~lN 84 (282)
T PRK14166 29 IESCLAVILVGD-NP----------ASQTYVKSKAKACEECGIKSL--VYHLNENTTQNELLALINTLN 84 (282)
T ss_pred CCceEEEEEeCC-CH----------HHHHHHHHHHHHHHHcCCEEE--EEECCCCCCHHHHHHHHHHHh
Confidence 345888999997 21 123356677788999999875 57777 88899999988775
No 36
>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium). The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte
Probab=37.10 E-value=1.2e+02 Score=19.67 Aligned_cols=47 Identities=26% Similarity=0.357 Sum_probs=33.6
Q ss_pred EeecCcceEEEEeccccCchHHHHHHHHHHHhcCCcc-----------CCCceeeeccHHHHH
Q 040932 39 YVGEMERKRFVVPISYLNHPLFADLLNRAEEEFGFNH-----------PMGGLTIPCKEDAFI 90 (97)
Q Consensus 39 yVG~~~~~RfvVp~~~L~hP~F~~LL~~aeEEfG~~~-----------~~G~L~IPC~~~~F~ 90 (97)
..|+ +..||.+|.+ ..|++|.++-.+-|+.+. ++...+|.|+.+.=+
T Consensus 6 ~~~~-d~~r~~l~~~----~~~~~L~~~i~~r~~~~~~~~f~LkY~Ddegd~v~ltsd~DL~e 63 (82)
T cd06407 6 TYGE-EKIRFRLPPS----WGFTELKQEIAKRFKLDDMSAFDLKYLDDDEEWVLLTCDADLEE 63 (82)
T ss_pred EeCC-eEEEEEcCCC----CCHHHHHHHHHHHhCCCCCCeeEEEEECCCCCeEEeecHHHHHH
Confidence 3455 7899998853 468999999888887753 335677888876544
No 37
>cd06398 PB1_Joka2 The PB1 domain is present in the Nicotiana plumbaginifolia Joka2 protein which interacts with sulfur stress inducible UP9 protein. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module
Probab=36.82 E-value=1.3e+02 Score=19.97 Aligned_cols=53 Identities=19% Similarity=0.210 Sum_probs=36.3
Q ss_pred eecCcceEEEEeccc-cCchHHHHHHHHHHHhcCCcc-----------CCCceeeeccHHHHHHHH
Q 040932 40 VGEMERKRFVVPISY-LNHPLFADLLNRAEEEFGFNH-----------PMGGLTIPCKEDAFIDLT 93 (97)
Q Consensus 40 VG~~~~~RfvVp~~~-L~hP~F~~LL~~aeEEfG~~~-----------~~G~L~IPC~~~~F~~vl 93 (97)
-|+ +.+||-+|.+= -.+..|..|.++-++-|.... ++.-++|.|+.+.-+.+-
T Consensus 7 y~~-~~rRf~l~~~~~~~d~~~~~L~~kI~~~f~l~~~~~~~l~Y~Dedgd~V~l~~D~DL~~a~~ 71 (91)
T cd06398 7 YGG-TLRRFTFPVAENQLDLNMDGLREKVEELFSLSPDADLSLTYTDEDGDVVTLVDDNDLTDAIQ 71 (91)
T ss_pred eCC-EEEEEEeccccccCCCCHHHHHHHHHHHhCCCCCCcEEEEEECCCCCEEEEccHHHHHHHHH
Confidence 354 79999999640 114578888888888777653 235688999977655543
No 38
>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=36.79 E-value=1.5e+02 Score=24.47 Aligned_cols=53 Identities=23% Similarity=0.382 Sum_probs=38.9
Q ss_pred CCCeEEEEeecCcceEEEEeccccCchHHHHHHHHHHHhcCCccCCCceeee--ccHHHHHHHHhhcC
Q 040932 32 PRGHIAVYVGEMERKRFVVPISYLNHPLFADLLNRAEEEFGFNHPMGGLTIP--CKEDAFIDLTSRLH 97 (97)
Q Consensus 32 pkG~~~VyVG~~~~~RfvVp~~~L~hP~F~~LL~~aeEEfG~~~~~G~L~IP--C~~~~F~~vl~~l~ 97 (97)
+.+...|.||+ +. ..-....--.+++|+.|++.. .+.+| ++.++++..+..||
T Consensus 86 ~P~LaiIlvGd-dp----------aS~~Yv~~k~K~a~~~GI~~~--~~~l~~~~te~ell~~I~~lN 140 (345)
T PLN02897 86 VPGLAVVLVGQ-QR----------DSQTYVRNKIKACEETGIKSL--LAELPEDCTEGQILSALRKFN 140 (345)
T ss_pred CCeEEEEEeCC-Ch----------HHHHHHHHHHHHHHhcCCEEE--EEECCCCCCHHHHHHHHHHHh
Confidence 44888999998 21 112455667788999999875 56777 77888999888775
No 39
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=36.43 E-value=1.9e+02 Score=23.10 Aligned_cols=54 Identities=19% Similarity=0.458 Sum_probs=40.3
Q ss_pred CCCCeEEEEeecCcceEEEEeccccCchHHHHHHHHHHHhcCCccCCCceeee--ccHHHHHHHHhhcC
Q 040932 31 VPRGHIAVYVGEMERKRFVVPISYLNHPLFADLLNRAEEEFGFNHPMGGLTIP--CKEDAFIDLTSRLH 97 (97)
Q Consensus 31 vpkG~~~VyVG~~~~~RfvVp~~~L~hP~F~~LL~~aeEEfG~~~~~G~L~IP--C~~~~F~~vl~~l~ 97 (97)
.+.+...|.||+ +. ..-....--.++.||.|+... .+.+| ++.++++..+..||
T Consensus 37 ~~P~Laii~vg~-d~----------aS~~Yv~~k~k~~~~~Gi~~~--~~~l~~~~~~~el~~~I~~LN 92 (287)
T PRK14176 37 ITPGLATILVGD-DP----------ASKMYVRLKHKACERVGIRAE--DQFLPADTTQEELLELIDSLN 92 (287)
T ss_pred CCCeEEEEEECC-Cc----------chHHHHHHHHHHHHHcCCEEE--EEECCCCCCHHHHHHHHHHHh
Confidence 345888999997 21 233456777889999999875 56777 77889999888775
No 40
>PF08948 DUF1859: Domain of unknown function (DUF1859); InterPro: IPR015043 This entry is represented by Bacteriophage PRD1, P5. This protein has no known function though it is sometimes found in the N terminus of bacteriophage spike proteins []. ; PDB: 1W8X_N.
Probab=34.60 E-value=15 Score=26.13 Aligned_cols=28 Identities=32% Similarity=0.604 Sum_probs=8.0
Q ss_pred CCCeEEEEeecCcceEEE----------EeccccCchHHH
Q 040932 32 PRGHIAVYVGEMERKRFV----------VPISYLNHPLFA 61 (97)
Q Consensus 32 pkG~~~VyVG~~~~~Rfv----------Vp~~~L~hP~F~ 61 (97)
.+||+|+.|-. +-.|+ +|+-|||.|+-+
T Consensus 86 ~QGYfPlL~~~--~~KFv~~~~~~GKks~P~~FlNF~IA~ 123 (126)
T PF08948_consen 86 KQGYFPLLVPG--RAKFVVRHTGSGKKSVPMFFLNFTIAQ 123 (126)
T ss_dssp --SS--EEE----SSSSEEEEEEEESS----S--------
T ss_pred Ccccceeeccc--hhhhhhhhccCCCcceeeEEEeceeee
Confidence 47999999964 44454 688888888644
No 41
>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=34.53 E-value=1.6e+02 Score=23.68 Aligned_cols=54 Identities=19% Similarity=0.332 Sum_probs=39.4
Q ss_pred CCCCeEEEEeecCcceEEEEeccccCchHHHHHHHHHHHhcCCccCCCceeee--ccHHHHHHHHhhcC
Q 040932 31 VPRGHIAVYVGEMERKRFVVPISYLNHPLFADLLNRAEEEFGFNHPMGGLTIP--CKEDAFIDLTSRLH 97 (97)
Q Consensus 31 vpkG~~~VyVG~~~~~RfvVp~~~L~hP~F~~LL~~aeEEfG~~~~~G~L~IP--C~~~~F~~vl~~l~ 97 (97)
.+.+...|.||+ +. ..-....--.++.|+.|++.+ -+.+| ++.++++..+..||
T Consensus 30 ~~P~LaiI~vg~-d~----------as~~Yv~~k~k~~~~~Gi~~~--~~~l~~~~~~~el~~~I~~lN 85 (297)
T PRK14167 30 VTPGLATVLMSD-DP----------ASETYVSMKQRDCEEVGIEAI--DVEIDPDAPAEELYDTIDELN 85 (297)
T ss_pred CCceEEEEEeCC-CH----------HHHHHHHHHHHHHHHcCCEEE--EEECCCCCCHHHHHHHHHHHh
Confidence 345888999997 22 233456677788899999875 56777 77888988888775
No 42
>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=34.48 E-value=1.9e+02 Score=23.14 Aligned_cols=54 Identities=22% Similarity=0.404 Sum_probs=40.1
Q ss_pred CCCCeEEEEeecCcceEEEEeccccCchHHHHHHHHHHHhcCCccCCCceeee--ccHHHHHHHHhhcC
Q 040932 31 VPRGHIAVYVGEMERKRFVVPISYLNHPLFADLLNRAEEEFGFNHPMGGLTIP--CKEDAFIDLTSRLH 97 (97)
Q Consensus 31 vpkG~~~VyVG~~~~~RfvVp~~~L~hP~F~~LL~~aeEEfG~~~~~G~L~IP--C~~~~F~~vl~~l~ 97 (97)
.+.+...|.||+ +. ..-....--.++.++.|++.. .+.+| ++.++|+..+..||
T Consensus 30 ~~P~Laii~vg~-d~----------as~~Yv~~k~k~~~~~Gi~~~--~~~l~~~~~~~~l~~~I~~lN 85 (286)
T PRK14184 30 RAPGLAVILVGE-DP----------ASQVYVRNKERACEDAGIVSE--AFRLPADTTQEELEDLIAELN 85 (286)
T ss_pred CCCEEEEEEeCC-Ch----------hHHHHHHHHHHHHHHcCCEEE--EEECCCCCCHHHHHHHHHHHh
Confidence 344888999998 21 122345667788999999875 57777 88899999998875
No 43
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=34.27 E-value=1.1e+02 Score=24.29 Aligned_cols=54 Identities=20% Similarity=0.376 Sum_probs=39.4
Q ss_pred CCCCeEEEEeecCcceEEEEeccccCchHHHHHHHHHHHhcCCccCCCceeee--ccHHHHHHHHhhcC
Q 040932 31 VPRGHIAVYVGEMERKRFVVPISYLNHPLFADLLNRAEEEFGFNHPMGGLTIP--CKEDAFIDLTSRLH 97 (97)
Q Consensus 31 vpkG~~~VyVG~~~~~RfvVp~~~L~hP~F~~LL~~aeEEfG~~~~~G~L~IP--C~~~~F~~vl~~l~ 97 (97)
.+.+...|.||+ +. ..-...+--.++.|+.|++.. .+.+| ++.++|+..+..||
T Consensus 31 ~~P~Laii~vg~-d~----------as~~Yv~~k~k~a~~~Gi~~~--~~~l~~~~~~~el~~~I~~lN 86 (284)
T PRK14190 31 IVPGLAVILVGD-DP----------ASHSYVRGKKKAAEKVGIYSE--LYEFPADITEEELLALIDRLN 86 (284)
T ss_pred CCCeEEEEEeCC-CH----------HHHHHHHHHHHHHHHcCCEEE--EEECCCCCCHHHHHHHHHHHh
Confidence 344788899997 21 133455677888999999875 56777 77888998888775
No 44
>PRK02797 4-alpha-L-fucosyltransferase; Provisional
Probab=33.48 E-value=1.9e+02 Score=23.85 Aligned_cols=45 Identities=20% Similarity=0.434 Sum_probs=32.7
Q ss_pred CCCCCeEEEEeec-------------------CcceEEEEeccc--cCchHHHHHHHHHHHhcCCc
Q 040932 30 VVPRGHIAVYVGE-------------------MERKRFVVPISY--LNHPLFADLLNRAEEEFGFN 74 (97)
Q Consensus 30 ~vpkG~~~VyVG~-------------------~~~~RfvVp~~~--L~hP~F~~LL~~aeEEfG~~ 74 (97)
..+++.+++.||. ++.-|++||.+| =|.--.++..+.+.|-||-+
T Consensus 141 ~~~~~~~tIlvGNSgd~SN~Hie~L~~l~~~~~~~v~ii~PlsYp~gn~~Yi~~V~~~~~~lF~~~ 206 (322)
T PRK02797 141 RQRAGKMTILVGNSGDRSNRHIEALRALHQQFGDNVKIIVPMGYPANNQAYIEEVRQAGLALFGAE 206 (322)
T ss_pred ccCCCceEEEEeCCCCCcccHHHHHHHHHHHhCCCeEEEEECCcCCCCHHHHHHHHHHHHHhcCcc
Confidence 4467889999996 233499999999 55556666666677778743
No 45
>TIGR03793 TOMM_pelo TOMM propeptide domain. This model represents a domain that is conserved among a large number of putative thiazole/oxazole-modified microcins (TOMM). Oddly, most of this seqence region appears homologous to nitrile hydratase subunits. This family is expanded especially in Pelotomaculum thermopropionicum SI.
Probab=32.74 E-value=74 Score=20.62 Aligned_cols=27 Identities=22% Similarity=0.342 Sum_probs=18.6
Q ss_pred cCchHHHHHH----HHHHHhcCCccCCCceee
Q 040932 55 LNHPLFADLL----NRAEEEFGFNHPMGGLTI 82 (97)
Q Consensus 55 L~hP~F~~LL----~~aeEEfG~~~~~G~L~I 82 (97)
-..|.|++.| ..+=+||||+-+ ..+.|
T Consensus 14 w~Dp~Fr~~Ll~DPraaL~e~G~~~P-~~~~i 44 (77)
T TIGR03793 14 WEDEAFKQALLTNPKEALEREGVQVP-AEVEV 44 (77)
T ss_pred HcCHHHHHHHHHCHHHHHHHhCCCCC-CceEE
Confidence 3578999966 445568899977 45544
No 46
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=32.56 E-value=1.2e+02 Score=24.23 Aligned_cols=54 Identities=19% Similarity=0.363 Sum_probs=39.4
Q ss_pred CCCCeEEEEeecCcceEEEEeccccCchHHHHHHHHHHHhcCCccCCCceeee--ccHHHHHHHHhhcC
Q 040932 31 VPRGHIAVYVGEMERKRFVVPISYLNHPLFADLLNRAEEEFGFNHPMGGLTIP--CKEDAFIDLTSRLH 97 (97)
Q Consensus 31 vpkG~~~VyVG~~~~~RfvVp~~~L~hP~F~~LL~~aeEEfG~~~~~G~L~IP--C~~~~F~~vl~~l~ 97 (97)
.+.+...|.||+ +. ..-....--.+++||+|++.. -+.+| ++.++|+..+..||
T Consensus 30 ~~P~Laii~vg~-d~----------as~~Yv~~k~k~a~~~Gi~~~--~~~l~~~~~~~el~~~I~~lN 85 (284)
T PRK14170 30 KKPGLAVVLVGD-NQ----------ASRTYVRNKQKRTEEAGMKSV--LIELPENVTEEKLLSVVEELN 85 (284)
T ss_pred CCCeEEEEEeCC-CH----------HHHHHHHHHHHHHHHcCCEEE--EEECCCCCCHHHHHHHHHHHh
Confidence 445899999997 21 123456677788899999875 46677 77888888888775
No 47
>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=31.71 E-value=2.2e+02 Score=22.81 Aligned_cols=54 Identities=19% Similarity=0.367 Sum_probs=39.7
Q ss_pred CCCCeEEEEeecCcceEEEEeccccCchHHHHHHHHHHHhcCCccCCCceeee--ccHHHHHHHHhhcC
Q 040932 31 VPRGHIAVYVGEMERKRFVVPISYLNHPLFADLLNRAEEEFGFNHPMGGLTIP--CKEDAFIDLTSRLH 97 (97)
Q Consensus 31 vpkG~~~VyVG~~~~~RfvVp~~~L~hP~F~~LL~~aeEEfG~~~~~G~L~IP--C~~~~F~~vl~~l~ 97 (97)
.+.+...|.||+ +. ..-...+--.+++++.|++.. .+.+| ++.++|+..+..||
T Consensus 30 ~~P~Laii~vg~-d~----------as~~Yv~~k~k~~~~~Gi~~~--~~~l~~~~~~~el~~~I~~lN 85 (295)
T PRK14174 30 KVPGLTVIIVGE-DP----------ASQVYVRNKAKSCKEIGMNST--VIELPADTTEEHLLKKIEDLN 85 (295)
T ss_pred CCCeEEEEEeCC-Ch----------HHHHHHHHHHHHHHHcCCEEE--EEECCCCCCHHHHHHHHHHHh
Confidence 345888999997 21 123456677788999999875 56677 77889999888775
No 48
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=31.51 E-value=1.4e+02 Score=24.05 Aligned_cols=54 Identities=15% Similarity=0.270 Sum_probs=40.1
Q ss_pred CCCCeEEEEeecCcceEEEEeccccCchHHHHHHHHHHHhcCCccCCCceeee--ccHHHHHHHHhhcC
Q 040932 31 VPRGHIAVYVGEMERKRFVVPISYLNHPLFADLLNRAEEEFGFNHPMGGLTIP--CKEDAFIDLTSRLH 97 (97)
Q Consensus 31 vpkG~~~VyVG~~~~~RfvVp~~~L~hP~F~~LL~~aeEEfG~~~~~G~L~IP--C~~~~F~~vl~~l~ 97 (97)
.+.+...+.||+ +. ..-.....-.+++|+.|.... .+.+| ++.+++...+..||
T Consensus 32 ~~P~LaiI~vg~-d~----------as~~Yv~~k~k~a~~~Gi~~~--~~~l~~~~t~~~l~~~I~~lN 87 (301)
T PRK14194 32 IEPALAVILVGN-DP----------ASQVYVRNKILRAEEAGIRSL--EHRLPADTSQARLLALIAELN 87 (301)
T ss_pred CCCeEEEEEeCC-Ch----------hHHHHHHHHHHHHHHcCCEEE--EEECCCCCCHHHHHHHHHHHc
Confidence 345888999997 21 123356677789999999875 57777 78889999988875
No 49
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised. This family is found in bacteria. This presumed domain is typically between 170 to 303 amino acids in length. The N-terminal half of this family is a BTB-like domain.
Probab=30.99 E-value=65 Score=26.33 Aligned_cols=49 Identities=22% Similarity=0.423 Sum_probs=36.5
Q ss_pred cceEEEEeccccCc--hHHHHHHHH---HHHhcCCccCCCceeeeccHHHHHHHHhhc
Q 040932 44 ERKRFVVPISYLNH--PLFADLLNR---AEEEFGFNHPMGGLTIPCKEDAFIDLTSRL 96 (97)
Q Consensus 44 ~~~RfvVp~~~L~h--P~F~~LL~~---aeEEfG~~~~~G~L~IPC~~~~F~~vl~~l 96 (97)
..+=|.-|.+.|-. ..|++.|.. +.++.. + =.|.+-||+..|+.++..+
T Consensus 12 ~~rdF~C~~~lL~~~M~YF~~~l~~~~~~~~~~~---~-idisVhCDv~iF~WLm~yv 65 (317)
T PF11822_consen 12 EKRDFTCPRDLLVSEMRYFAEYLSRYINDSQRWE---E-IDISVHCDVHIFEWLMRYV 65 (317)
T ss_pred cceeeeccHHHHHHhhHHHHHHHhhcccccCcCC---C-cceEEecChhHHHHHHHHh
Confidence 46779999888854 559999966 333332 2 3588999999999998754
No 50
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=30.83 E-value=2.3e+02 Score=22.61 Aligned_cols=53 Identities=15% Similarity=0.295 Sum_probs=38.7
Q ss_pred CCCeEEEEeecCcceEEEEeccccCchHHHHHHHHHHHhcCCccCCCceeee--ccHHHHHHHHhhcC
Q 040932 32 PRGHIAVYVGEMERKRFVVPISYLNHPLFADLLNRAEEEFGFNHPMGGLTIP--CKEDAFIDLTSRLH 97 (97)
Q Consensus 32 pkG~~~VyVG~~~~~RfvVp~~~L~hP~F~~LL~~aeEEfG~~~~~G~L~IP--C~~~~F~~vl~~l~ 97 (97)
+.+...|.||+ +. ..-...+--.++++++|++.. -+.+| ++.++|+..+..||
T Consensus 30 ~P~Laii~vg~-d~----------as~~Yv~~k~k~a~~~Gi~~~--~~~l~~~~~~~el~~~I~~lN 84 (282)
T PRK14169 30 TPTLAVVLVGS-DP----------ASEVYVRNKQRRAEDIGVRSL--MFRLPEATTQADLLAKVAELN 84 (282)
T ss_pred CCeEEEEEeCC-Ch----------hHHHHHHHHHHHHHHcCCEEE--EEECCCCCCHHHHHHHHHHHh
Confidence 44788999997 21 122345667788899999875 56777 88889999888775
No 51
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=30.65 E-value=2.3e+02 Score=22.57 Aligned_cols=54 Identities=19% Similarity=0.378 Sum_probs=38.1
Q ss_pred CCCCeEEEEeecCcceEEEEeccccCchHHHHHHHHHHHhcCCccCCCceeee--ccHHHHHHHHhhcC
Q 040932 31 VPRGHIAVYVGEMERKRFVVPISYLNHPLFADLLNRAEEEFGFNHPMGGLTIP--CKEDAFIDLTSRLH 97 (97)
Q Consensus 31 vpkG~~~VyVG~~~~~RfvVp~~~L~hP~F~~LL~~aeEEfG~~~~~G~L~IP--C~~~~F~~vl~~l~ 97 (97)
.+.+...|.||++.. .-...+--.++.|+.|++.+ .+.+| ++.++|+..+..||
T Consensus 30 ~~P~La~I~vg~d~a-----------s~~Yv~~k~k~~~~~Gi~~~--~~~l~~~~~~~el~~~I~~lN 85 (282)
T PRK14180 30 ITPKLVAIIVGNDPA-----------SKTYVASKEKACAQVGIDSQ--VITLPEHTTESELLELIDQLN 85 (282)
T ss_pred CCCeEEEEEeCCCHH-----------HHHHHHHHHHHHHHcCCEEE--EEECCCCCCHHHHHHHHHHHh
Confidence 345888999997211 12245667778899999875 46666 67788888888775
No 52
>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein.
Probab=30.41 E-value=58 Score=24.50 Aligned_cols=42 Identities=19% Similarity=0.198 Sum_probs=28.9
Q ss_pred ceEEEEeccccCchHHHHHHHHHHHhcCCccCCCceeeeccHH
Q 040932 45 RKRFVVPISYLNHPLFADLLNRAEEEFGFNHPMGGLTIPCKED 87 (97)
Q Consensus 45 ~~RfvVp~~~L~hP~F~~LL~~aeEEfG~~~~~G~L~IPC~~~ 87 (97)
.++-++..+-.. -.++.|.+++|+-.|...+.-.+++|++..
T Consensus 32 ~~g~I~d~~~~~-~~l~~l~~~a~~~~g~~~~~vvisVP~~~~ 73 (239)
T TIGR02529 32 RDGIVVDFLGAV-EIVRRLKDTLEQKLGIELTHAATAIPPGTI 73 (239)
T ss_pred cCCeEEEhHHHH-HHHHHHHHHHHHHhCCCcCcEEEEECCCCC
Confidence 344445444332 358889999988888876657899998653
No 53
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=30.36 E-value=1.4e+02 Score=23.89 Aligned_cols=54 Identities=20% Similarity=0.386 Sum_probs=39.0
Q ss_pred CCCCeEEEEeecCcceEEEEeccccCchHHHHHHHHHHHhcCCccCCCceeee--ccHHHHHHHHhhcC
Q 040932 31 VPRGHIAVYVGEMERKRFVVPISYLNHPLFADLLNRAEEEFGFNHPMGGLTIP--CKEDAFIDLTSRLH 97 (97)
Q Consensus 31 vpkG~~~VyVG~~~~~RfvVp~~~L~hP~F~~LL~~aeEEfG~~~~~G~L~IP--C~~~~F~~vl~~l~ 97 (97)
.+.+...|.||+ +. ..-.....-.+++++.|+..+ -+.+| ++.+.|...+..||
T Consensus 31 ~~P~LaiI~vg~-d~----------as~~Yv~~k~k~a~~~Gi~~~--~~~l~~~~~e~~l~~~I~~lN 86 (294)
T PRK14187 31 LFPCLIVILVGD-DP----------ASQLYVRNKQRKAEMLGLRSE--TILLPSTISESSLIEKINELN 86 (294)
T ss_pred CCCeEEEEEeCC-Ch----------hHHHHHHHHHHHHHHcCCEEE--EEECCCCCCHHHHHHHHHHHh
Confidence 345888999997 21 133456677788899999875 46676 77788888888775
No 54
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=29.51 E-value=2.5e+02 Score=22.39 Aligned_cols=54 Identities=17% Similarity=0.269 Sum_probs=39.7
Q ss_pred CCCCeEEEEeecCcceEEEEeccccCchHHHHHHHHHHHhcCCccCCCceeee--ccHHHHHHHHhhcC
Q 040932 31 VPRGHIAVYVGEMERKRFVVPISYLNHPLFADLLNRAEEEFGFNHPMGGLTIP--CKEDAFIDLTSRLH 97 (97)
Q Consensus 31 vpkG~~~VyVG~~~~~RfvVp~~~L~hP~F~~LL~~aeEEfG~~~~~G~L~IP--C~~~~F~~vl~~l~ 97 (97)
.+.+...|.||+ +. ..-.....-.+++++.|++.. .+.+| ++.++|+..+..||
T Consensus 30 ~~P~LaiI~vg~-d~----------as~~Yv~~k~k~a~~~Gi~~~--~~~l~~~~~~~el~~~I~~lN 85 (285)
T PRK14191 30 KRPKLAVILVGK-DP----------ASQTYVNMKIKACERVGMDSD--LHTLQENTTEAELLSLIKDLN 85 (285)
T ss_pred CCCeEEEEEeCC-CH----------HHHHHHHHHHHHHHHcCCEEE--EEECCCCCCHHHHHHHHHHHh
Confidence 344788899997 21 123456677888999999875 57788 77888999888775
No 55
>PF07429 Glyco_transf_56: 4-alpha-L-fucosyltransferase glycosyl transferase group 56; InterPro: IPR009993 This family contains the bacterial enzyme 4-alpha-L-fucosyltransferase (Fuc4NAc transferase) (approximately 360 residues long). This catalyses the synthesis of Fuc4NAc-ManNAcA-GlcNAc-PP-Und (lipid III) as part of the biosynthetic pathway of enterobacterial common antigen (ECA), a polysaccharide comprised of the trisaccharide repeat unit Fuc4NAc-ManNAcA-GlcNAc [].; GO: 0008417 fucosyltransferase activity, 0009246 enterobacterial common antigen biosynthetic process, 0009276 Gram-negative-bacterium-type cell wall
Probab=28.48 E-value=1.5e+02 Score=24.70 Aligned_cols=45 Identities=22% Similarity=0.510 Sum_probs=34.4
Q ss_pred CCCCCeEEEEeec-------------------CcceEEEEeccccC--chHHHHHHHHHHHhcCCc
Q 040932 30 VVPRGHIAVYVGE-------------------MERKRFVVPISYLN--HPLFADLLNRAEEEFGFN 74 (97)
Q Consensus 30 ~vpkG~~~VyVG~-------------------~~~~RfvVp~~~L~--hP~F~~LL~~aeEEfG~~ 74 (97)
..++|-..+.||. ++..|++||++|=. .-...++.+.+++-||-+
T Consensus 180 ~~~~~~ltILvGNSgd~sNnHieaL~~L~~~~~~~~kIivPLsYg~~n~~Yi~~V~~~~~~lF~~~ 245 (360)
T PF07429_consen 180 KKNKGKLTILVGNSGDPSNNHIEALEALKQQFGDDVKIIVPLSYGANNQAYIQQVIQAGKELFGAE 245 (360)
T ss_pred cCCCCceEEEEcCCCCCCccHHHHHHHHHHhcCCCeEEEEECCCCCchHHHHHHHHHHHHHhcCcc
Confidence 3457899999985 24689999999974 457777777777778854
No 56
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=28.31 E-value=1.7e+02 Score=18.78 Aligned_cols=47 Identities=17% Similarity=0.241 Sum_probs=33.2
Q ss_pred ceEEEEeccccCchHHHHHHHHHHHhcCCccCCCceeee-ccHHHHHHHHhhc
Q 040932 45 RKRFVVPISYLNHPLFADLLNRAEEEFGFNHPMGGLTIP-CKEDAFIDLTSRL 96 (97)
Q Consensus 45 ~~RfvVp~~~L~hP~F~~LL~~aeEEfG~~~~~G~L~IP-C~~~~F~~vl~~l 96 (97)
..-.+|+++|.+|-.....-+.|.. +|- + .+... +....|+..|..+
T Consensus 49 aD~VIv~t~~vsH~~~~~vk~~akk-~~i--p--~~~~~~~~~~~l~~~l~~~ 96 (97)
T PF10087_consen 49 ADLVIVFTDYVSHNAMWKVKKAAKK-YGI--P--IIYSRSRGVSSLERALERL 96 (97)
T ss_pred CCEEEEEeCCcChHHHHHHHHHHHH-cCC--c--EEEECCCCHHHHHHHHHhh
Confidence 5678899999999988776666654 442 1 23344 6788888888765
No 57
>cd01406 SIR2-like Sir2-like: Prokaryotic group of uncharacterized Sir2-like proteins which lack certain key catalytic residues and conserved zinc binding cysteines; and are members of the SIR2 superfamily of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation.
Probab=27.31 E-value=77 Score=23.39 Aligned_cols=36 Identities=22% Similarity=0.432 Sum_probs=28.1
Q ss_pred CeEEEEeecCcceEEEEeccccCchHHHHHHHHHHHhcCCccC
Q 040932 34 GHIAVYVGEMERKRFVVPISYLNHPLFADLLNRAEEEFGFNHP 76 (97)
Q Consensus 34 G~~~VyVG~~~~~RfvVp~~~L~hP~F~~LL~~aeEEfG~~~~ 76 (97)
|.++++||-+-... .+-|...+|++...+|++.+.+
T Consensus 1 g~lvlFiGAG~S~~-------~glP~W~~Ll~~l~~~~~~~~~ 36 (242)
T cd01406 1 GRVVIFVGAGVSVS-------SGLPDWKTLLDEIASELGLEID 36 (242)
T ss_pred CCEEEEecCccccc-------cCCCChHHHHHHHHHHcCCccc
Confidence 78899999732222 4789999999999999987754
No 58
>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=27.13 E-value=3.1e+02 Score=22.03 Aligned_cols=54 Identities=19% Similarity=0.250 Sum_probs=39.4
Q ss_pred CCCCeEEEEeecCcceEEEEeccccCchHHHHHHHHHHHhcCCccCCCceeee--ccHHHHHHHHhhcC
Q 040932 31 VPRGHIAVYVGEMERKRFVVPISYLNHPLFADLLNRAEEEFGFNHPMGGLTIP--CKEDAFIDLTSRLH 97 (97)
Q Consensus 31 vpkG~~~VyVG~~~~~RfvVp~~~L~hP~F~~LL~~aeEEfG~~~~~G~L~IP--C~~~~F~~vl~~l~ 97 (97)
.+.+...|.||+ +. ..-...+.-.++++|.|.+.. .+.+| ++.++++..+..||
T Consensus 30 ~~P~LaiI~vg~-d~----------as~~Yv~~k~k~a~~~Gi~~~--~~~l~~~~~~~el~~~I~~lN 85 (293)
T PRK14185 30 KRPHLAAILVGH-DG----------GSETYVANKVKACEECGFKSS--LIRYESDVTEEELLAKVRELN 85 (293)
T ss_pred CCCeEEEEEeCC-CH----------HHHHHHHHHHHHHHHcCCEEE--EEECCCCCCHHHHHHHHHHHh
Confidence 345899999998 21 122345667788999998865 57777 77888998888775
No 59
>cd06396 PB1_NBR1 The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The NBR1 protein contains a type I PB1 domain.
Probab=27.08 E-value=1.9e+02 Score=19.05 Aligned_cols=45 Identities=13% Similarity=0.220 Sum_probs=33.4
Q ss_pred cceEEEEeccccCchHHHHHHHHHHHhcCC--------ccCCCceeeeccHHHHH
Q 040932 44 ERKRFVVPISYLNHPLFADLLNRAEEEFGF--------NHPMGGLTIPCKEDAFI 90 (97)
Q Consensus 44 ~~~RfvVp~~~L~hP~F~~LL~~aeEEfG~--------~~~~G~L~IPC~~~~F~ 90 (97)
+..||.++- -.++.|.+|..+-+.-|++ |.++-+++|.|+.+.=|
T Consensus 10 d~~rf~~~~--~~~~~~~~L~~ev~~rf~l~~f~lKYlDde~e~v~lssd~eLeE 62 (81)
T cd06396 10 ESQSFLVSD--SENTTWASVEAMVKVSFGLNDIQIKYVDEENEEVSVNSQGEYEE 62 (81)
T ss_pred eEEEEEecC--CCCCCHHHHHHHHHHHhCCCcceeEEEcCCCCEEEEEchhhHHH
Confidence 588998874 1255799999999998885 34456889999876533
No 60
>COG1759 5-formaminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate synthetase (purine biosynthesis) [Nucleotide transport and metabolism]
Probab=26.72 E-value=29 Score=28.93 Aligned_cols=24 Identities=33% Similarity=0.649 Sum_probs=18.1
Q ss_pred cCCCCCeEEEEeecC-cceEEEEec
Q 040932 29 QVVPRGHIAVYVGEM-ERKRFVVPI 52 (97)
Q Consensus 29 ~~vpkG~~~VyVG~~-~~~RfvVp~ 52 (97)
.-+|-|.|++|||-+ --+.|.||+
T Consensus 88 I~IP~gSfv~Y~G~d~ie~~~~vP~ 112 (361)
T COG1759 88 IFIPHGSFVAYVGYDGIENEFEVPM 112 (361)
T ss_pred EEecCCceEEEecchhhhhcccCcc
Confidence 578999999999962 235677774
No 61
>cd06536 CIDE_N_ICAD CIDE_N domain of ICAD. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD (DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40 and ICAD/DFF45 during apoptosis. In normal cells, DFF exists in the nucleus as a heterodimer composed of CAD/DFF40 as a latent nuclease and its chaperone and inhibitor subunit ICAD/DFF45. Apoptotic activation of caspase-3 results in the cleavage of DFF45/ICAD and release of active DFF40/CAD nuclease.
Probab=26.61 E-value=1.2e+02 Score=20.12 Aligned_cols=36 Identities=25% Similarity=0.336 Sum_probs=25.7
Q ss_pred cceEEEEeccccCchHHHHHHHHHHHhcCCccCCCceeeec
Q 040932 44 ERKRFVVPISYLNHPLFADLLNRAEEEFGFNHPMGGLTIPC 84 (97)
Q Consensus 44 ~~~RfvVp~~~L~hP~F~~LL~~aeEEfG~~~~~G~L~IPC 84 (97)
..+||=|-++ .+++|+.++.+-|....++++++|=+
T Consensus 12 r~~k~GV~A~-----sL~eL~~K~~~~l~l~~~~~~~~lvL 47 (80)
T cd06536 12 RQKQHGVAAS-----SLEELRIKACESLGFDSSSAPITLVL 47 (80)
T ss_pred CCeeEeEEcC-----CHHHHHHHHHHHhCCCCCCCceEEEE
Confidence 4566766654 46899999999999985433566554
No 62
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=26.27 E-value=1e+02 Score=24.59 Aligned_cols=54 Identities=11% Similarity=0.311 Sum_probs=37.9
Q ss_pred CCCCeEEEEeecCcceEEEEeccccCchHHHHHHHHHHHhcCCccCCCceeee--ccHHHHHHHHhhcC
Q 040932 31 VPRGHIAVYVGEMERKRFVVPISYLNHPLFADLLNRAEEEFGFNHPMGGLTIP--CKEDAFIDLTSRLH 97 (97)
Q Consensus 31 vpkG~~~VyVG~~~~~RfvVp~~~L~hP~F~~LL~~aeEEfG~~~~~G~L~IP--C~~~~F~~vl~~l~ 97 (97)
.+.+...|.||+ +. ..-.....-.+++++.|++.. .+.+| ++.++++..+..||
T Consensus 30 ~~P~Laii~vgd-d~----------as~~Yv~~k~k~a~~~Gi~~~--~~~l~~~~~~~~l~~~I~~lN 85 (281)
T PRK14183 30 IVPGLAVILVGD-DP----------ASHTYVKMKAKACDRVGIYSI--THEMPSTISQKEILETIAMMN 85 (281)
T ss_pred CCCeEEEEEeCC-CH----------HHHHHHHHHHHHHHHcCCEEE--EEECCCCCCHHHHHHHHHHHh
Confidence 455889999997 21 123345777888899998864 45665 67778888887775
No 63
>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=26.19 E-value=3.1e+02 Score=22.85 Aligned_cols=54 Identities=19% Similarity=0.389 Sum_probs=37.8
Q ss_pred CCCCeEEEEeecCcceEEEEeccccCchHHHHHHHHHHHhcCCccCCCceeee--ccHHHHHHHHhhcC
Q 040932 31 VPRGHIAVYVGEMERKRFVVPISYLNHPLFADLLNRAEEEFGFNHPMGGLTIP--CKEDAFIDLTSRLH 97 (97)
Q Consensus 31 vpkG~~~VyVG~~~~~RfvVp~~~L~hP~F~~LL~~aeEEfG~~~~~G~L~IP--C~~~~F~~vl~~l~ 97 (97)
.+.+...|.||+ +. ..-....--.++.|+.|++.. .+.+| ++.+++...+..||
T Consensus 102 ~~P~LaiIlvG~-dp----------aS~~Yv~~k~K~~e~~GI~~~--~~~lpe~~te~ell~~I~~LN 157 (364)
T PLN02616 102 VVPGLAVILVGD-RK----------DSATYVRNKKKACDSVGINSF--EVRLPEDSTEQEVLKFISGFN 157 (364)
T ss_pred CCCeEEEEEeCC-Ch----------hHHHHHHHHHHHHHHcCCEEE--EEECCCCCCHHHHHHHHHHHc
Confidence 344889999998 21 123345667788999999864 46666 66778888887775
No 64
>PF05194 UreE_C: UreE urease accessory protein, C-terminal domain; InterPro: IPR007864 Urease and other nickel metalloenzymes are synthesised as precursors devoid of the metalloenzyme active site. These precursors then undergo a complex post-translational maturation process that requires a number of accessory proteins. Members of this group are nickel-binding proteins required for urease metallocentre assembly []. They are believed to function as metallochaperones to deliver nickel to urease apoprotein [, ]. It has been shown by yeast two-hybrid analysis that UreE forms a dimeric complex with UreG in Helicobacter pylori []. The UreDFG-apoenzyme complex has also been shown to exist [, ] and is believed to be, with the addition of UreE, the assembly system for active urease []. The complexes, rather than the individual proteins, presumably bind to UreB via UreE/H recognition sites. The structure of Klebsiella aerogenes UreE reveals a unique two-domain architecture.The N-terminal domain is structurally related to a heat shock protein, while the C-terminal domain shows homology to the Atx1 copper metallochaperone [, ]. Significantly, the metal-binding sites in UreE and Atx1 are distinct in location and types of residues despite the relationship between these proteins and the mechanism for UreE activation of urease is proposed to be different from the thiol ligand exchange mechanism used by the copper metallochaperones. The C-terminal domain of this protein is the metal-binding region, which can bind up to six Ni molecules per dimer. Most members of this group contain a histidine-rich C-terminal motif that is involved in, but not solely responsible for, binding nickel ions in K. aerogenes UreE []. However, internal ligands, not the histidine residues at the C terminus, are necessary for UreE to assist in urease activation in K. aerogenes [], even though the truncated protein lacking the His-rich region binds two nickel ions instead of six. In H. pylori and some other organisms, the terminal histidine-rich binding sites are absent, but the internal histidine sites are present, and the latter probably function as nickel donors. Deletion analysis shows that this domain alone is sufficient for metal-binding and activation of urease [].; GO: 0016151 nickel ion binding, 0006461 protein complex assembly, 0019627 urea metabolic process; PDB: 3NXZ_B 3TJA_B 3LA0_B 3TJ9_B 3NY0_A 3L9Z_A 3TJ8_A 1EAR_A 1EB0_A 1GMU_B ....
Probab=26.07 E-value=96 Score=19.86 Aligned_cols=40 Identities=18% Similarity=0.373 Sum_probs=24.7
Q ss_pred HHHHHHhhhhcccCCCCcCCCCCeEEEEeecCcceEEEEeccccCchHHHHHHHHH
Q 040932 12 AKQILKRHNNHALKSADQVVPRGHIAVYVGEMERKRFVVPISYLNHPLFADLLNRA 67 (97)
Q Consensus 12 ~k~~l~r~~s~~~~~~~~~vpkG~~~VyVG~~~~~RfvVp~~~L~hP~F~~LL~~a 67 (97)
.+++.+-+-..++ -|+|+++++ .+..|| ..+.+.++|++-
T Consensus 12 ~~~~a~l~~~iGN---------rH~p~~i~~---~~l~v~----~d~~l~~~L~~l 51 (87)
T PF05194_consen 12 PKEMARLAYHIGN---------RHWPLFIEE---DELYVP----YDHVLEELLRKL 51 (87)
T ss_dssp HHHHHHHHHHHHH---------TT--EEEET---TEEEEE------HHHHHHHHHT
T ss_pred HHHHHHHHHHHcC---------CccceEEcC---CEEEec----CcHHHHHHHHHC
Confidence 3455555555554 489999997 378888 567778888774
No 65
>PF11470 TUG-UBL1: GLUT4 regulating protein TUG; InterPro: IPR021569 TUG is a GLUT4 regulating protein and functions to retain membrane vesicles containing GLUT4 intracellularly. TUG releases the GLUT4 containing vesicles to the cellular exocytic machinery in response to insulin stimulation which allows translocation to the plasma membrane []. TUG has an N-terminal ubiquitin-like domain (UBL1) which in similar proteins appears to participate in protein-protein interactions []. The region does have a area of negative electrostatic potential and increased backbone motility which leads to suggestions of a potential protein-protein interaction site []. ; PDB: 2AL3_A.
Probab=25.66 E-value=96 Score=19.43 Aligned_cols=35 Identities=23% Similarity=0.422 Sum_probs=20.7
Q ss_pred cceEEEEeccccCchHHHHHHHHHHHhcCCccCCCce
Q 040932 44 ERKRFVVPISYLNHPLFADLLNRAEEEFGFNHPMGGL 80 (97)
Q Consensus 44 ~~~RfvVp~~~L~hP~F~~LL~~aeEEfG~~~~~G~L 80 (97)
..+|+.|++. ..-.+.++|++|.+-||++.+.+.|
T Consensus 5 ~~rr~~vkvt--p~~~l~~VL~eac~k~~l~~~~~~L 39 (65)
T PF11470_consen 5 NFRRFKVKVT--PNTTLNQVLEEACKKFGLDPSSYDL 39 (65)
T ss_dssp TS-EEEE-----TTSBHHHHHHHHHHHTT--GGG-EE
T ss_pred CCcEEEEEEC--CCCCHHHHHHHHHHHcCCCccceEE
Confidence 3477777765 3446889999999999998654433
No 66
>PF05041 Pecanex_C: Pecanex protein (C-terminus); InterPro: IPR007735 This family consists of pecanex protein homologues. The pecanex protein is a maternal-effect neurogenic gene found in Drosophila [].; GO: 0016021 integral to membrane
Probab=25.27 E-value=62 Score=25.27 Aligned_cols=26 Identities=35% Similarity=0.482 Sum_probs=18.6
Q ss_pred HHHHHHHhhhhcccCCCCcCCCCCeEEEEeec
Q 040932 11 NAKQILKRHNNHALKSADQVVPRGHIAVYVGE 42 (97)
Q Consensus 11 ~~k~~l~r~~s~~~~~~~~~vpkG~~~VyVG~ 42 (97)
..+++||-.-. ++++.|=|| |+||..
T Consensus 195 ~~~~~LRNl~~-----qs~d~PlGY-PiYvSP 220 (232)
T PF05041_consen 195 NHKQLLRNLIN-----QSADPPLGY-PIYVSP 220 (232)
T ss_pred chHHHHHHHHH-----hhccCCCCc-ceEecc
Confidence 44555555443 447999999 999986
No 67
>cd06397 PB1_UP1 Uncharacterized protein 1. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=25.10 E-value=2.2e+02 Score=19.08 Aligned_cols=42 Identities=17% Similarity=0.368 Sum_probs=31.9
Q ss_pred cceEEEEeccccCchHHHHHHHHHHHhcCCc----------cCCCceeeeccHHHH
Q 040932 44 ERKRFVVPISYLNHPLFADLLNRAEEEFGFN----------HPMGGLTIPCKEDAF 89 (97)
Q Consensus 44 ~~~RfvVp~~~L~hP~F~~LL~~aeEEfG~~----------~~~G~L~IPC~~~~F 89 (97)
..+||..|. .|.+.+|-++-+.=|-+. .++..|||.=+.+..
T Consensus 10 ~~RRf~~~~----~pt~~~L~~kl~~Lf~lp~~~~~vtYiDeD~D~ITlssd~eL~ 61 (82)
T cd06397 10 DTRRIVFPD----IPTWEALASKLENLYNLPEIKVGVTYIDNDNDEITLSSNKELQ 61 (82)
T ss_pred ceEEEecCC----CccHHHHHHHHHHHhCCChhHeEEEEEcCCCCEEEecchHHHH
Confidence 689999998 899999999988877665 333467787665443
No 68
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=24.29 E-value=2.8e+02 Score=22.15 Aligned_cols=54 Identities=22% Similarity=0.401 Sum_probs=39.7
Q ss_pred CCCCeEEEEeecCcceEEEEeccccCchHHHHHHHHHHHhcCCccCCCceeee--ccHHHHHHHHhhcC
Q 040932 31 VPRGHIAVYVGEMERKRFVVPISYLNHPLFADLLNRAEEEFGFNHPMGGLTIP--CKEDAFIDLTSRLH 97 (97)
Q Consensus 31 vpkG~~~VyVG~~~~~RfvVp~~~L~hP~F~~LL~~aeEEfG~~~~~G~L~IP--C~~~~F~~vl~~l~ 97 (97)
.+.+...|.||+ +. ..-....--.+++|+.|++.. .+.+| ++.+.++..+..||
T Consensus 29 ~~P~LaiI~vg~-d~----------as~~Yv~~k~k~a~~~Gi~~~--~~~l~~~~t~~~l~~~I~~lN 84 (282)
T PRK14182 29 VQTGLTVVRVGD-DP----------ASAIYVRGKRKDCEEVGITSV--EHHLPATTTQAELLALIARLN 84 (282)
T ss_pred CCCeEEEEEeCC-CH----------HHHHHHHHHHHHHHHcCCEEE--EEECCCCCCHHHHHHHHHHHh
Confidence 455899999998 21 123355667788999999875 56777 78888999888775
No 69
>PF00763 THF_DHG_CYH: Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain; InterPro: IPR020630 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the N-terminal catalytic domain of these enzymes. ; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 2C2X_B 2C2Y_A 1EDZ_A 1EE9_A 4A26_B 3NGL_C 3NGX_A 1B0A_A 1DIA_A 1A4I_B ....
Probab=24.22 E-value=1.7e+02 Score=19.73 Aligned_cols=55 Identities=16% Similarity=0.371 Sum_probs=35.0
Q ss_pred CCCCCeEEEEeecCcceEEEEeccccCchHHHHHHHHHHHhcCCccCCCceeee--ccHHHHHHHHhhcC
Q 040932 30 VVPRGHIAVYVGEMERKRFVVPISYLNHPLFADLLNRAEEEFGFNHPMGGLTIP--CKEDAFIDLTSRLH 97 (97)
Q Consensus 30 ~vpkG~~~VyVG~~~~~RfvVp~~~L~hP~F~~LL~~aeEEfG~~~~~G~L~IP--C~~~~F~~vl~~l~ 97 (97)
..+.+...|+||+ +. ..-.......++.+++|.+-. ...+| ++.+.|...+..||
T Consensus 27 ~~~P~Laii~vg~-d~----------~S~~Y~~~k~k~~~~~Gi~~~--~~~l~~~~~~~el~~~i~~lN 83 (117)
T PF00763_consen 27 GITPKLAIILVGD-DP----------ASISYVRSKQKAAEKLGIEFE--LIELPEDISEEELLELIEKLN 83 (117)
T ss_dssp T---EEEEEEES---H----------HHHHHHHHHHHHHHHHT-EEE--EEEE-TTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEEecCC-Ch----------hHHHHHHHHHHHHHHcCCceE--EEECCCCcCHHHHHHHHHHHh
Confidence 5677889999998 21 123467778888999998865 46665 67778888877664
No 70
>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac. Domain in Broad-Complex, Tramtrack and Bric a brac. Also known as POZ (poxvirus and zinc finger) domain. Known to be a protein-protein interaction motif found at the N-termini of several C2H2-type transcription factors as well as Shaw-type potassium channels. Known structure reveals a tightly intertwined dimer formed via interactions between N-terminal strand and helix structures. However in a subset of BTB/POZ domains, these two secondary structures appear to be missing. Be aware SMART predicts BTB/POZ domains without the beta1- and alpha1-secondary structures.
Probab=24.06 E-value=1.4e+02 Score=16.94 Aligned_cols=52 Identities=23% Similarity=0.333 Sum_probs=35.0
Q ss_pred EEeecCcceEEEEeccccC--chHHHHHHHHHHHhcCCccCCCceeee-ccHHHHHHHHhhc
Q 040932 38 VYVGEMERKRFVVPISYLN--HPLFADLLNRAEEEFGFNHPMGGLTIP-CKEDAFIDLTSRL 96 (97)
Q Consensus 38 VyVG~~~~~RfvVp~~~L~--hP~F~~LL~~aeEEfG~~~~~G~L~IP-C~~~~F~~vl~~l 96 (97)
+-||+ ++|-+.-..|. .|.|++++.....+- .. ..+.++ .+...|+.++..+
T Consensus 4 i~v~~---~~~~~h~~iL~~~s~~f~~~~~~~~~~~---~~-~~i~l~~~~~~~f~~~l~~l 58 (90)
T smart00225 4 LVVGG---KKFKAHKAVLAACSPYFKALFSGDFKES---KK-SEIYLDDVSPEDFRALLEFL 58 (90)
T ss_pred EEECC---EEEehHHHHHhhcCHHHHHHHcCCCccC---CC-CEEEecCCCHHHHHHHHHee
Confidence 44554 67777776664 478999987654332 22 467776 6889999888765
No 71
>KOG2813 consensus Predicted molecular chaperone, contains DnaJ domain [Posttranslational modification, protein turnover, chaperones]
Probab=23.89 E-value=57 Score=27.38 Aligned_cols=54 Identities=26% Similarity=0.251 Sum_probs=41.4
Q ss_pred EEEEeecCcceEEEEeccccCchHHHHHHHHHHHhcCCccCCCceeeeccHHHHHHH
Q 040932 36 IAVYVGEMERKRFVVPISYLNHPLFADLLNRAEEEFGFNHPMGGLTIPCKEDAFIDL 92 (97)
Q Consensus 36 ~~VyVG~~~~~RfvVp~~~L~hP~F~~LL~~aeEEfG~~~~~G~L~IPC~~~~F~~v 92 (97)
.+||--. +.+|+ |...+++..+=.+||.+||-+-=|+.. .-..+||...-|+++
T Consensus 274 ~vV~wKn-~~krk-VSehr~~~~iPeell~~AeG~~~f~~e-n~~iypis~~~~~Dv 327 (406)
T KOG2813|consen 274 IVVYWKN-EKKRK-VSEHRTESEIPEELLFQAEGKRIFEEE-NDYIYPISQYQEEDV 327 (406)
T ss_pred EEEEeec-hhhhh-hhhhcccccCcHHHHHhhhcchhhhhc-cceEEeccccchhhH
Confidence 3455444 67887 788899988899999999976556555 468999998888775
No 72
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=23.49 E-value=2.1e+02 Score=22.73 Aligned_cols=54 Identities=15% Similarity=0.265 Sum_probs=39.0
Q ss_pred CCCCeEEEEeecCcceEEEEeccccCchHHHHHHHHHHHhcCCccCCCceeee--ccHHHHHHHHhhcC
Q 040932 31 VPRGHIAVYVGEMERKRFVVPISYLNHPLFADLLNRAEEEFGFNHPMGGLTIP--CKEDAFIDLTSRLH 97 (97)
Q Consensus 31 vpkG~~~VyVG~~~~~RfvVp~~~L~hP~F~~LL~~aeEEfG~~~~~G~L~IP--C~~~~F~~vl~~l~ 97 (97)
.+.+...|.||+ +. ..-...+--.++++|.|++.. .+.+| ++.++|+..+..||
T Consensus 31 ~~p~Laii~vg~-~~----------as~~Yv~~k~k~a~~~Gi~~~--~~~l~~~~~~~~l~~~I~~lN 86 (286)
T PRK14175 31 FTPKLSVILVGN-DG----------ASQSYVRSKKKAAEKIGMISE--IVHLEETATEEEVLNELNRLN 86 (286)
T ss_pred CCCeEEEEEeCC-CH----------HHHHHHHHHHHHHHHcCCEEE--EEECCCCCCHHHHHHHHHHHh
Confidence 345788999997 21 123355667788899999875 56777 77888888888775
No 73
>PRK13277 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase-like protein; Provisional
Probab=23.03 E-value=25 Score=29.14 Aligned_cols=27 Identities=37% Similarity=0.559 Sum_probs=19.8
Q ss_pred cCCCCCeEEEEeecCcc-eEEEEeccccCc
Q 040932 29 QVVPRGHIAVYVGEMER-KRFVVPISYLNH 57 (97)
Q Consensus 29 ~~vpkG~~~VyVG~~~~-~RfvVp~~~L~h 57 (97)
.-+|.|.|++|||-+.- ..|.|| ++.+
T Consensus 88 i~iPh~sf~~y~g~~~ie~~~~vp--~fGn 115 (366)
T PRK13277 88 IFVPNRSFAVYVGYDAIENEFKVP--IFGN 115 (366)
T ss_pred EEecCCCeEEEecHHHHhhcCCCC--cccC
Confidence 57899999999997222 368888 4444
No 74
>cd06080 MUM1_like Mutated melanoma-associated antigen 1 (MUM-1) is a melanoma-associated antigen (MAA). MUM-1 belongs to the mutated or aberrantly expressed type of MAAs, along with antigens such as CDK4, beta-catenin, gp100-in4, p15, and N-acetylglucosaminyltransferase V. It is highly expressed in several types of human cancers. The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding, proteins that function as transcription factors regulating a variety of developmental processes.
Probab=22.20 E-value=1.5e+02 Score=19.36 Aligned_cols=42 Identities=24% Similarity=0.331 Sum_probs=33.8
Q ss_pred CCCeEEEEeecC---cceEEEEeccccCchHH---HHHHHHHHHhcCC
Q 040932 32 PRGHIAVYVGEM---ERKRFVVPISYLNHPLF---ADLLNRAEEEFGF 73 (97)
Q Consensus 32 pkG~~~VyVG~~---~~~RfvVp~~~L~hP~F---~~LL~~aeEEfG~ 73 (97)
++-+.+.+.|+. ...++-+..-|+.|+.+ +.|++++.|.|.-
T Consensus 28 ~~k~~V~FfG~~~~~a~~~~~~l~p~~~~~~~~ek~~~~~k~ke~~~~ 75 (80)
T cd06080 28 KQKARVNFIGDNMQSEKKGIRVVKRWLKHFDCTEKQKLTNKAKESYEQ 75 (80)
T ss_pred CCEEEEEEeCCCCceeccchhhcccccccHHHHHHHHHHHHHHHHHHH
Confidence 666778888972 24778888899999999 5899999998764
No 75
>PF07369 DUF1488: Protein of unknown function (DUF1488); InterPro: IPR009962 This family consists of several hypothetical bacterial proteins of around 85 residues in length. The function of this family is unknown.; PDB: 2GPI_A.
Probab=21.82 E-value=1.8e+02 Score=18.04 Aligned_cols=20 Identities=15% Similarity=0.154 Sum_probs=17.2
Q ss_pred eEEEEeecCcceEEEEecccc
Q 040932 35 HIAVYVGEMERKRFVVPISYL 55 (97)
Q Consensus 35 ~~~VyVG~~~~~RfvVp~~~L 55 (97)
.|+++|+. ..-++.|..+-|
T Consensus 18 ~F~a~~~g-~~i~C~Is~~aL 37 (83)
T PF07369_consen 18 RFPAQVDG-MQIRCAISAEAL 37 (83)
T ss_dssp EEEEEETT-EEEEEEEEHHHH
T ss_pred EEEEEECC-EEEEEEEeHHHH
Confidence 58899986 789999999887
No 76
>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=21.15 E-value=4.3e+02 Score=21.21 Aligned_cols=53 Identities=17% Similarity=0.325 Sum_probs=38.8
Q ss_pred CCCeEEEEeecCcceEEEEeccccCchHHHHHHHHHHHhcCCccCCCceeee--ccHHHHHHHHhhcC
Q 040932 32 PRGHIAVYVGEMERKRFVVPISYLNHPLFADLLNRAEEEFGFNHPMGGLTIP--CKEDAFIDLTSRLH 97 (97)
Q Consensus 32 pkG~~~VyVG~~~~~RfvVp~~~L~hP~F~~LL~~aeEEfG~~~~~G~L~IP--C~~~~F~~vl~~l~ 97 (97)
..+...|.||+ +. ..-.....-.++.|+.|+... .+.+| ++.++++..+..||
T Consensus 33 ~P~LaiI~vg~-d~----------as~~Yv~~k~k~~~~~Gi~~~--~~~l~~~~t~~el~~~I~~lN 87 (297)
T PRK14168 33 VPGLVTILVGE-SP----------ASLSYVTLKIKTAHRLGFHEI--QDNQSVDITEEELLALIDKYN 87 (297)
T ss_pred CCeEEEEEeCC-CH----------HHHHHHHHHHHHHHHcCCEEE--EEECCCCCCHHHHHHHHHHHh
Confidence 44889999997 21 123456677888999999864 45665 88888999888775
No 77
>KOG1748 consensus Acyl carrier protein/NADH-ubiquinone oxidoreductase, NDUFAB1/SDAP subunit [Energy production and conversion; Lipid transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=20.66 E-value=49 Score=23.89 Aligned_cols=28 Identities=32% Similarity=0.334 Sum_probs=18.8
Q ss_pred HHHhcCCccCC-CceeeeccHHHHHHHHh
Q 040932 67 AEEEFGFNHPM-GGLTIPCKEDAFIDLTS 94 (97)
Q Consensus 67 aeEEfG~~~~~-G~L~IPC~~~~F~~vl~ 94 (97)
-||||||+-++ -+=.|-|-.+.+++|.+
T Consensus 97 lEEEFgiEIpd~dAdki~t~~da~~yI~~ 125 (131)
T KOG1748|consen 97 LEEEFGIEIPDEDADKIKTVRDAADYIAD 125 (131)
T ss_pred hHHHhCCccCcchhhhhCCHHHHHHHHHh
Confidence 38999998653 23446676677776654
No 78
>cd01615 CIDE_N CIDE_N domain, found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins, as well as CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD(DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of ICAD/DFF45, and the CAD/DFF40 and CIDE nucleases during apoptosis. The CIDE-N domain is also found in the FSP27/CIDE-C protein.
Probab=20.05 E-value=1.6e+02 Score=19.27 Aligned_cols=34 Identities=21% Similarity=0.266 Sum_probs=24.4
Q ss_pred cceEEEEeccccCchHHHHHHHHHHHhcCCccCCCceeeec
Q 040932 44 ERKRFVVPISYLNHPLFADLLNRAEEEFGFNHPMGGLTIPC 84 (97)
Q Consensus 44 ~~~RfvVp~~~L~hP~F~~LL~~aeEEfG~~~~~G~L~IPC 84 (97)
..+||=|-++ .+++|+.++.+-|+.+. .+++|=+
T Consensus 12 r~~k~GV~A~-----sL~eL~~K~~~~l~l~~--~~~~lvL 45 (78)
T cd01615 12 RSRKKGVAAS-----SLEELLSKACEKLKLPS--APVTLVL 45 (78)
T ss_pred CCeeEEEEcC-----CHHHHHHHHHHHcCCCC--CCeEEEE
Confidence 4567766654 46899999999999973 3455544
Done!