Query 040932
Match_columns 97
No_of_seqs 108 out of 626
Neff 4.8
Searched_HMMs 29240
Date Mon Mar 25 21:33:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040932.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040932hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2al3_A TUG long isoform; TUG U 65.5 7.9 0.00027 25.2 3.8 35 44-80 18-52 (90)
2 2vpk_A Myoneurin; transcriptio 60.9 9.9 0.00034 23.6 3.6 50 36-96 25-79 (116)
3 1und_A Advillin, P92; actin bi 58.9 2.8 9.6E-05 23.2 0.6 20 53-72 1-20 (37)
4 2vkp_A BTB/POZ domain-containi 57.7 14 0.00049 22.4 3.9 56 36-96 11-70 (109)
5 1r29_A B-cell lymphoma 6 prote 56.2 10 0.00035 24.0 3.1 53 36-96 32-88 (127)
6 1y74_B MLIN-2/CASK, peripheral 56.2 4.7 0.00016 22.8 1.3 20 53-72 26-49 (50)
7 2nz0_B Potassium voltage-gated 53.4 13 0.00045 25.4 3.5 60 32-96 33-93 (140)
8 3ga1_A Nucleus accumbens-assoc 52.7 21 0.00073 22.6 4.3 50 36-96 36-89 (129)
9 3drz_A BTB/POZ domain-containi 50.9 38 0.0013 21.4 5.2 59 33-96 5-68 (107)
10 1s1g_A Potassium voltage-gated 49.6 9.9 0.00034 25.4 2.3 60 32-96 11-71 (124)
11 3n5b_B ASR0485 protein; PII, P 46.2 2.9 9.8E-05 28.5 -0.8 28 27-63 11-38 (112)
12 2if5_A Zinc finger and BTB dom 45.8 31 0.0011 21.3 4.1 54 36-96 28-84 (120)
13 4b4u_A Bifunctional protein fo 44.8 63 0.0021 24.9 6.5 55 30-97 51-107 (303)
14 2xko_C PIPX, global nitrogen r 41.6 3.5 0.00012 27.1 -1.0 10 53-62 5-14 (89)
15 1nn7_A Potassium channel KV4.2 41.0 5.2 0.00018 25.9 -0.2 56 36-96 2-58 (105)
16 3b84_A Zinc finger and BTB dom 39.6 35 0.0012 21.3 3.7 50 36-96 27-79 (119)
17 1yu8_X Villin; alpha helix, 3- 35.4 11 0.00037 23.3 0.6 21 52-72 30-50 (67)
18 3ohu_A Transcription regulator 34.9 27 0.00092 21.8 2.5 52 36-96 35-90 (125)
19 2q81_A MIZ-1 protein; BTB/POZ 34.8 41 0.0014 20.9 3.4 49 36-96 30-81 (119)
20 1w8x_N Protein P31, protein C, 31.8 9.9 0.00034 26.0 0.0 28 32-61 86-123 (126)
21 1qzp_A Dematin; villin headpie 31.6 9.5 0.00033 23.5 -0.1 21 52-72 31-51 (68)
22 3p2o_A Bifunctional protein fo 31.4 1.3E+02 0.0045 22.8 6.3 53 32-97 33-87 (285)
23 3htm_A Speckle-type POZ protei 31.3 70 0.0024 20.6 4.2 54 36-96 37-93 (172)
24 1ujs_A Actin-binding LIM prote 31.1 14 0.00048 23.9 0.7 21 52-72 45-65 (88)
25 1b0a_A Protein (fold bifunctio 30.6 1.3E+02 0.0046 22.8 6.2 54 31-97 32-87 (288)
26 1buo_A POZ domain, protein (pr 29.9 51 0.0017 20.5 3.2 49 36-96 31-82 (121)
27 2ppi_A Gigaxonin; BTB domain, 29.7 64 0.0022 20.9 3.8 56 36-96 50-108 (144)
28 2k6m_S Supervillin; SVHP, HP, 29.6 12 0.0004 23.0 0.1 21 52-72 30-50 (67)
29 2lmc_A Bacterial RNA polymeras 29.5 37 0.0013 21.8 2.5 14 60-73 56-69 (84)
30 3l07_A Bifunctional protein fo 29.5 1.4E+02 0.0048 22.6 6.2 54 31-97 33-88 (285)
31 1y6i_A Mg-chelatase cofactor G 29.4 3.1 0.00011 31.4 -3.1 30 29-61 200-229 (233)
32 1z3x_A Putative cytidyltransfe 29.3 2.5 8.5E-05 32.0 -3.7 29 29-60 208-236 (238)
33 3pmi_A PWWP domain-containing 29.2 18 0.00063 25.2 1.1 30 43-72 46-78 (134)
34 2ihc_A Transcription regulator 26.8 56 0.0019 20.4 3.0 52 36-96 32-87 (124)
35 1zav_U 50S ribosomal protein L 26.1 42 0.0014 17.4 1.9 13 60-72 18-30 (30)
36 2bkf_A Zinc-finger protein NBR 26.1 1.2E+02 0.0042 19.4 4.6 49 39-91 13-69 (87)
37 3ngx_A Bifunctional protein fo 25.9 1.1E+02 0.0038 23.2 5.0 54 30-97 25-80 (276)
38 4a26_A Putative C-1-tetrahydro 25.9 1.9E+02 0.0065 22.1 6.4 54 31-97 36-91 (300)
39 3fkc_A Transcriptional regulat 24.9 62 0.0021 20.1 3.0 49 36-96 34-85 (116)
40 3qli_A Coenzyme A transferase; 23.8 44 0.0015 27.1 2.5 44 29-73 402-454 (455)
41 4a5o_A Bifunctional protein fo 23.5 2.4E+02 0.0081 21.4 6.5 55 30-97 33-89 (286)
42 1vd2_A Protein kinase C, IOTA 22.9 1.5E+02 0.0051 18.7 4.8 28 44-75 16-43 (89)
43 1wy3_A Villin; structural prot 22.2 25 0.00085 19.0 0.5 17 55-71 1-17 (35)
44 3ezo_A Malonyl COA-acyl carrie 21.6 55 0.0019 24.3 2.5 40 34-74 10-49 (318)
45 2yy9_A Zinc finger and BTB dom 21.6 56 0.0019 20.8 2.3 50 36-96 28-80 (135)
46 1zo0_A ODC-AZ, ornithine decar 21.4 52 0.0018 22.5 2.1 39 34-75 36-78 (126)
47 4eoz_A Speckle-type POZ protei 21.0 68 0.0023 20.0 2.6 54 36-96 28-84 (145)
48 1o51_A Hypothetical protein TM 20.5 1.3E+02 0.0043 19.7 3.9 28 35-70 15-42 (114)
49 4dpo_A Conserved protein; stru 20.1 1.7E+02 0.0059 18.3 5.0 57 7-69 37-104 (119)
50 2z8h_A Transcription regulator 20.0 64 0.0022 20.5 2.3 52 36-96 39-94 (138)
51 1wj6_A KIAA0049 protein, RSGI 20.0 1.7E+02 0.0058 19.3 4.4 50 38-91 20-77 (101)
No 1
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=65.50 E-value=7.9 Score=25.21 Aligned_cols=35 Identities=17% Similarity=0.238 Sum_probs=27.5
Q ss_pred cceEEEEeccccCchHHHHHHHHHHHhcCCccCCCce
Q 040932 44 ERKRFVVPISYLNHPLFADLLNRAEEEFGFNHPMGGL 80 (97)
Q Consensus 44 ~~~RfvVp~~~L~hP~F~~LL~~aeEEfG~~~~~G~L 80 (97)
..+|+.|++ -..-.+.++|++|.+.||++.+...|
T Consensus 18 n~rr~~VKv--tp~t~L~~VL~eaC~K~gl~~~~~~L 52 (90)
T 2al3_A 18 NGRRHTVKV--TPSTVLLQVLEDTCRRQDFNPSEYDL 52 (90)
T ss_dssp TSCEEEECC--CTTSBHHHHHHHHHHHTTCCGGGCEE
T ss_pred CCcEEEEEE--CCCCCHHHHHHHHHHHhCCChhhCeE
Confidence 468999988 34557899999999999998664444
No 2
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens}
Probab=60.86 E-value=9.9 Score=23.63 Aligned_cols=50 Identities=18% Similarity=0.301 Sum_probs=37.5
Q ss_pred EEEEeecCcceEEEEecccc--CchHHHHHHHHHHHhcCCccCCCceeee---ccHHHHHHHHhhc
Q 040932 36 IAVYVGEMERKRFVVPISYL--NHPLFADLLNRAEEEFGFNHPMGGLTIP---CKEDAFIDLTSRL 96 (97)
Q Consensus 36 ~~VyVG~~~~~RfvVp~~~L--~hP~F~~LL~~aeEEfG~~~~~G~L~IP---C~~~~F~~vl~~l 96 (97)
+.+.||+ ++|-+.-..| ..|.|++++... . + ..+.|+ .+.+.|+.++..+
T Consensus 25 v~l~v~~---~~~~aHk~vLaa~S~yF~~~f~~~------~-~-~~i~l~~~~~~~~~f~~ll~~~ 79 (116)
T 2vpk_A 25 CTIVIGE---FQFKAHRNVLASFSEYFGAIYRST------S-E-NNVFLDQSQVKADGFQKLLEFI 79 (116)
T ss_dssp EEEEETT---EEEEECHHHHHHHCHHHHHHHTTC------C-C-SCEECCTTTCCHHHHHHHHHHH
T ss_pred EEEEECC---EEEeccHHHHhhcCHHHHHHHcCC------C-C-CeEEeecCCCCHHHHHHHHHHH
Confidence 4566675 6888887777 679999998754 2 3 578888 7889999988753
No 3
>1und_A Advillin, P92; actin binding, F-actin binding, cytoskeleton, headpiece subdomain; NMR {Homo sapiens} SCOP: a.14.1.1
Probab=58.94 E-value=2.8 Score=23.18 Aligned_cols=20 Identities=20% Similarity=0.473 Sum_probs=17.4
Q ss_pred cccCchHHHHHHHHHHHhcC
Q 040932 53 SYLNHPLFADLLNRAEEEFG 72 (97)
Q Consensus 53 ~~L~hP~F~~LL~~aeEEfG 72 (97)
.||+.-.|++++.++.+||-
T Consensus 1 ~yLsd~dF~~vFgmsr~eF~ 20 (37)
T 1und_A 1 XYLSEQDFVSVFGITRGQFA 20 (37)
T ss_dssp -CCCHHHHHHHHSSCHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHH
Confidence 48999999999999999983
No 4
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens}
Probab=57.67 E-value=14 Score=22.39 Aligned_cols=56 Identities=18% Similarity=0.245 Sum_probs=37.6
Q ss_pred EEEEeec-CcceEEEEecccc--CchHHHHHHHHHHHhcCCccCCCceeee-ccHHHHHHHHhhc
Q 040932 36 IAVYVGE-MERKRFVVPISYL--NHPLFADLLNRAEEEFGFNHPMGGLTIP-CKEDAFIDLTSRL 96 (97)
Q Consensus 36 ~~VyVG~-~~~~RfvVp~~~L--~hP~F~~LL~~aeEEfG~~~~~G~L~IP-C~~~~F~~vl~~l 96 (97)
+.+.||+ ++.++|-+.-..| ..|.|++++...-.|-. ..+.|| .+.+.|+.++..+
T Consensus 11 v~l~v~~~~~~~~~~~Hk~iLa~~S~~F~~~f~~~~~e~~-----~~i~l~~~~~~~f~~~l~~i 70 (109)
T 2vkp_A 11 VHFVVGPPGATRTVPAHKYVLAVGSSVFYAMFYGDLAEVK-----SEIHIPDVEPAAFLILLKYM 70 (109)
T ss_dssp EEEEESSTTSCEEEEECHHHHHHHCHHHHHHHC------C-----CEEEETTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCcEEEEeeHHHHHHcCHHHHHHhcCCcccCC-----CeEEeCCCCHHHHHHHHHHH
Confidence 4556664 2358899988888 68999999975433322 468887 6889999988754
No 5
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A
Probab=56.16 E-value=10 Score=23.97 Aligned_cols=53 Identities=15% Similarity=0.272 Sum_probs=39.5
Q ss_pred EEEEeecCcceEEEEecccc--CchHHHHHHHHHHHhcCCccCCCceee-e-ccHHHHHHHHhhc
Q 040932 36 IAVYVGEMERKRFVVPISYL--NHPLFADLLNRAEEEFGFNHPMGGLTI-P-CKEDAFIDLTSRL 96 (97)
Q Consensus 36 ~~VyVG~~~~~RfvVp~~~L--~hP~F~~LL~~aeEEfG~~~~~G~L~I-P-C~~~~F~~vl~~l 96 (97)
+.+.||+ ++|-+.-..| ..|.|++++...-.| .. ..|.| + .+.+.|+.++..+
T Consensus 32 v~l~v~~---~~~~aHk~iLaa~S~~F~~~f~~~~~e----~~-~~i~l~~~~~~~~f~~ll~~~ 88 (127)
T 1r29_A 32 VVIVVSR---EQFRAHKTVLMACSGLFYSIFTDQLKR----NL-SVINLDPEINPEGFNILLDFM 88 (127)
T ss_dssp EEEEETT---EEEEECHHHHHHHCHHHHHHHTSTTTT----TC-SEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECC---EEEehHHHHHHHhCHHHHHHhcCCccC----CC-CEEEeCCCCCHHHHHHHHHHH
Confidence 4556675 6888887777 689999999865554 23 68999 4 6888999988754
No 6
>1y74_B MLIN-2/CASK, peripheral plasma membrane protein CASK; L27 domain, scaffold protein, protein assembly, cell polarity, transport protein; NMR {Mus musculus} SCOP: a.194.1.1 PDB: 1zl8_B
Probab=56.16 E-value=4.7 Score=22.82 Aligned_cols=20 Identities=35% Similarity=0.584 Sum_probs=15.5
Q ss_pred cccCchHHHHHHHH----HHHhcC
Q 040932 53 SYLNHPLFADLLNR----AEEEFG 72 (97)
Q Consensus 53 ~~L~hP~F~~LL~~----aeEEfG 72 (97)
..|+.|.|++||+- |.++||
T Consensus 26 ~lL~~PHfqaLl~ahD~Va~~~y~ 49 (50)
T 1y74_B 26 RILTQPHFMALLQTHDVVAHEVYS 49 (50)
T ss_dssp HHHHSHHHHHHHHHHHHHHHHHHT
T ss_pred HHHcCHHHHHHHHHHHHHHHHHhc
Confidence 57889999999975 556664
No 7
>2nz0_B Potassium voltage-gated channel subfamily D membe; KV4.3, kchip1, membrane protein; 3.20A {Homo sapiens} PDB: 2i2r_A
Probab=53.39 E-value=13 Score=25.38 Aligned_cols=60 Identities=23% Similarity=0.226 Sum_probs=43.6
Q ss_pred CCCeEEEEeecCcceEEEEecccc-CchHHHHHHHHHHHhcCCccCCCceeeeccHHHHHHHHhhc
Q 040932 32 PRGHIAVYVGEMERKRFVVPISYL-NHPLFADLLNRAEEEFGFNHPMGGLTIPCKEDAFIDLTSRL 96 (97)
Q Consensus 32 pkG~~~VyVG~~~~~RfvVp~~~L-~hP~F~~LL~~aeEEfG~~~~~G~L~IPC~~~~F~~vl~~l 96 (97)
....+.+-||. .||.+..+-| ++|. .+|..++...-++.+.|.+-|-.+...|.+||..+
T Consensus 33 ~~~~V~LNVGG---~~F~T~~~TL~~~P~--S~L~~~~~~~~~~~~~g~yFiDRdp~~F~~ILnfl 93 (140)
T 2nz0_B 33 QDELIVLNVSG---RRFQTWRTTLERYPD--TLLGSTEKEFFFNEDTKEYFFDRDPEVFRCVLNFY 93 (140)
T ss_dssp CCCEEEEEETT---EEEEEEHHHHHTCTT--STTTSGGGGGSEETTTTEEEECSCHHHHHHHHHHH
T ss_pred CCCEEEEEECC---EEEEeeHHHHhcCCC--eeecccCCcccccCCCCeEEEeCCcHHHHHHHHHH
Confidence 45788999996 8999988766 3332 23333444444555568999999999999999865
No 8
>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens}
Probab=52.65 E-value=21 Score=22.56 Aligned_cols=50 Identities=22% Similarity=0.364 Sum_probs=37.9
Q ss_pred EEEEeecCcceEEEEeccccC--chHHHHHHHHHHHhcCCccCCCceeee--ccHHHHHHHHhhc
Q 040932 36 IAVYVGEMERKRFVVPISYLN--HPLFADLLNRAEEEFGFNHPMGGLTIP--CKEDAFIDLTSRL 96 (97)
Q Consensus 36 ~~VyVG~~~~~RfvVp~~~L~--hP~F~~LL~~aeEEfG~~~~~G~L~IP--C~~~~F~~vl~~l 96 (97)
+.+.||+ ++|-+.-..|. .|.|++++... .. ..+.|| .+.+.|+.++..+
T Consensus 36 v~l~v~~---~~~~~Hk~vLaa~S~~F~~~f~~~-------~~-~~i~l~~~~~~~~f~~ll~~i 89 (129)
T 3ga1_A 36 VSVVVKG---HAFKAHRAVLAASSSYFRDLFNNS-------RS-AVVELPAAVQPQSFQQILSFC 89 (129)
T ss_dssp EEEEETT---EEEEECHHHHHHHBHHHHHHHHHC-------CC-SEEECCTTCCHHHHHHHHHHH
T ss_pred eEEEECC---EEEEehHHHHHHcCHHHHHHHcCC-------CC-CEEEECCCCCHHHHHHHHHHH
Confidence 4666775 67877766664 68999999875 23 689996 8899999998753
No 9
>3drz_A BTB/POZ domain-containing protein KCTD5; potassium channel domain T1, pentamer, unkno function; 1.90A {Homo sapiens}
Probab=50.90 E-value=38 Score=21.45 Aligned_cols=59 Identities=17% Similarity=0.246 Sum_probs=41.9
Q ss_pred CCeEEEEeecCcceEEEEeccccC-ch--HHHHHHHHHHHhcC--CccCCCceeeeccHHHHHHHHhhc
Q 040932 33 RGHIAVYVGEMERKRFVVPISYLN-HP--LFADLLNRAEEEFG--FNHPMGGLTIPCKEDAFIDLTSRL 96 (97)
Q Consensus 33 kG~~~VyVG~~~~~RfvVp~~~L~-hP--~F~~LL~~aeEEfG--~~~~~G~L~IPC~~~~F~~vl~~l 96 (97)
...+.+-||. ++|.+..+-|. +| .|..+... ..++. .+. .|.+-|-++...|.+||..+
T Consensus 5 ~~~v~LNVGG---~~f~t~~~TL~~~p~s~L~~~~~~-~~~~~~~~d~-~~~~fiDRdp~~F~~IL~~l 68 (107)
T 3drz_A 5 SKWVRLNVGG---TYFLTTRQTLCRDPKSFLYRLCQA-DPDLDSDKDE-TGAYLIDRDPTYFGPVLNYL 68 (107)
T ss_dssp CCEEEEEETT---EEEEEEHHHHTSSTTSHHHHHHTT-CGGGGGGBCT-TSCEEECSCHHHHHHHHHHH
T ss_pred CCEEEEEECC---EEEEECHHHHhcCCCcchhHHHhc-CCCCCcCCCC-CceEEecCChHHHHHHHHHh
Confidence 4578889996 89999988775 34 46666432 12332 233 38899999999999999764
No 10
>1s1g_A Potassium voltage-gated channel subfamily D membe; K+ channels, tetramerization domain, T1 domain, transport PR; 2.60A {Homo sapiens} SCOP: d.42.1.2
Probab=49.58 E-value=9.9 Score=25.39 Aligned_cols=60 Identities=23% Similarity=0.229 Sum_probs=43.0
Q ss_pred CCCeEEEEeecCcceEEEEeccccC-chHHHHHHHHHHHhcCCccCCCceeeeccHHHHHHHHhhc
Q 040932 32 PRGHIAVYVGEMERKRFVVPISYLN-HPLFADLLNRAEEEFGFNHPMGGLTIPCKEDAFIDLTSRL 96 (97)
Q Consensus 32 pkG~~~VyVG~~~~~RfvVp~~~L~-hP~F~~LL~~aeEEfG~~~~~G~L~IPC~~~~F~~vl~~l 96 (97)
....+.+-||. .||.+..+-|. .|. .+|..++...-++.+.|.+-|-.+...|..||..|
T Consensus 11 ~~~~V~LNVGG---~~F~t~~~TL~~~p~--S~L~~~~~~~~~~~~~g~~FiDRdp~~F~~ILnfl 71 (124)
T 1s1g_A 11 QDELIVLNVSG---RRFQTWRTTLERYPD--TLLGSTEKEFFFNEDTKEYFFDRDPEVFRCVLNFY 71 (124)
T ss_dssp -CCEEEEEETT---EEEEEEHHHHTTSTT--SSTTSSGGGGTBCSSSCSEEECSCHHHHHHHHHHH
T ss_pred CCCEEEEEeCC---EEEEEeHHHHhcCCC--ceecccCCcccccCCCCcEEEcCChHHHHHHHHHH
Confidence 45678899996 99999988764 332 23333444444555568999999999999999765
No 11
>3n5b_B ASR0485 protein; PII, PIPX, transcription regulator, signal transducer; HET: ADP; 1.90A {Nostoc}
Probab=46.24 E-value=2.9 Score=28.54 Aligned_cols=28 Identities=32% Similarity=0.532 Sum_probs=8.7
Q ss_pred CCcCCCCCeEEEEeecCcceEEEEeccccCchHHHHH
Q 040932 27 ADQVVPRGHIAVYVGEMERKRFVVPISYLNHPLFADL 63 (97)
Q Consensus 27 ~~~~vpkG~~~VyVG~~~~~RfvVp~~~L~hP~F~~L 63 (97)
++.-||+|..---+.. -.|||||.|--|
T Consensus 11 ~~~~~~~~~~~~~ms~---------E~YLNHPTFGLL 38 (112)
T 3n5b_B 11 SSGLVPRGSHMNPENS---------ETYINHPTWGLL 38 (112)
T ss_dssp ---------------C---------CCEEEETTTEEE
T ss_pred cCCcccCCccCCCcch---------hhhccCCccchh
Confidence 4567787765433332 239999998533
No 12
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A
Probab=45.80 E-value=31 Score=21.30 Aligned_cols=54 Identities=17% Similarity=0.178 Sum_probs=36.8
Q ss_pred EEEEeecCcceEEEEecccc--CchHHHHHHHHHHHhcCCccCCCceeee-ccHHHHHHHHhhc
Q 040932 36 IAVYVGEMERKRFVVPISYL--NHPLFADLLNRAEEEFGFNHPMGGLTIP-CKEDAFIDLTSRL 96 (97)
Q Consensus 36 ~~VyVG~~~~~RfvVp~~~L--~hP~F~~LL~~aeEEfG~~~~~G~L~IP-C~~~~F~~vl~~l 96 (97)
+.+.||+ ++|-+.-..| ..|.|++++...-.|- .. ..+.|+ .+.+.|+.++..+
T Consensus 28 v~l~v~~---~~~~aHk~vLaa~S~~F~~~f~~~~~e~---~~-~~i~l~~~~~~~f~~ll~~~ 84 (120)
T 2if5_A 28 VVILVEG---REFPTHRSVLAACSQYFKKLFTSGAVVD---QQ-NVYEIDFVSAEALTALMDFA 84 (120)
T ss_dssp EEEEETT---EEEEECHHHHHHHCHHHHHHHHC--------CC-SEEECCSSCHHHHHHHHHHH
T ss_pred eEEEECC---EEEeHHHHHHHHhCHHHHHHhcCCcccc---CC-ceEEeCCCCHHHHHHHHHHH
Confidence 4456665 7888887777 4899999997543332 23 578888 5889999988653
No 13
>4b4u_A Bifunctional protein fold; oxidoreductase; HET: NAP; 1.45A {Acinetobacter baumannii atcc 19606} PDB: 4b4v_A* 4b4w_A*
Probab=44.77 E-value=63 Score=24.95 Aligned_cols=55 Identities=11% Similarity=0.247 Sum_probs=38.4
Q ss_pred CCCCCeEEEEeecCcceEEEEeccccCchHHHHHHHHHHHhcCCccCCCceeee--ccHHHHHHHHhhcC
Q 040932 30 VVPRGHIAVYVGEMERKRFVVPISYLNHPLFADLLNRAEEEFGFNHPMGGLTIP--CKEDAFIDLTSRLH 97 (97)
Q Consensus 30 ~vpkG~~~VyVG~~~~~RfvVp~~~L~hP~F~~LL~~aeEEfG~~~~~G~L~IP--C~~~~F~~vl~~l~ 97 (97)
..+.|...|.||+ +. . .-....--.++.||.|+... .+.+| ++.++++..+..||
T Consensus 51 g~~P~LavIlVG~-dp------a----S~~Yv~~K~k~c~~vGi~s~--~~~lp~~~se~ell~~I~~LN 107 (303)
T 4b4u_A 51 GRTPILATILVGD-DG------A----SATYVRMKGNACRRVGMDSL--KIELPQETTTEQLLAEIEKLN 107 (303)
T ss_dssp SCCCEEEEEEESC-CH------H----HHHHHHHHHHHHHHTTCEEE--EEEECTTCCHHHHHHHHHHHH
T ss_pred CCCCcEEEEEeCC-CH------H----HHHHHHHHHHHHHHcCCeEE--EEecCccCCHHHHHHHHHHhc
Confidence 4567899999998 21 0 11234566788899998865 56777 67788888877764
No 14
>2xko_C PIPX, global nitrogen regulator; transcription, nitrogen assimilation, CRP/FNR superfamily, 2-oxoglutarate, global nitrogen controller; HET: AKG; 2.25A {Synechococcus elongatus} PDB: 2xg8_D*
Probab=41.56 E-value=3.5 Score=27.11 Aligned_cols=10 Identities=60% Similarity=1.075 Sum_probs=7.9
Q ss_pred cccCchHHHH
Q 040932 53 SYLNHPLFAD 62 (97)
Q Consensus 53 ~~L~hP~F~~ 62 (97)
.|||||.|--
T Consensus 5 ~YLNHPtFGl 14 (89)
T 2xko_C 5 NYLNHPTFGL 14 (89)
T ss_dssp CEEEETTTEE
T ss_pred ccccCCccch
Confidence 5999999843
No 15
>1nn7_A Potassium channel KV4.2; teteramerization domain, voltage gated potassium channel SHAL, membrane protein; 2.10A {Rattus norvegicus} SCOP: d.42.1.2
Probab=41.03 E-value=5.2 Score=25.86 Aligned_cols=56 Identities=21% Similarity=0.234 Sum_probs=35.4
Q ss_pred EEEEeecCcceEEEEecccc-CchHHHHHHHHHHHhcCCccCCCceeeeccHHHHHHHHhhc
Q 040932 36 IAVYVGEMERKRFVVPISYL-NHPLFADLLNRAEEEFGFNHPMGGLTIPCKEDAFIDLTSRL 96 (97)
Q Consensus 36 ~~VyVG~~~~~RfvVp~~~L-~hP~F~~LL~~aeEEfG~~~~~G~L~IPC~~~~F~~vl~~l 96 (97)
+.+-||. .||.+..+-| ++|. .+|..++...-++.+.|.+-|-.+...|.+||..+
T Consensus 2 V~LNVGG---~~f~t~~~TL~~~p~--s~L~~~~~~~~~~~~~~~~FiDRdp~~F~~ILnfl 58 (105)
T 1nn7_A 2 IVLNVSG---TRFQTWQDTLERYPD--TLLGSSERDFFYHPETQQYFFDRDPDIFRHILNFY 58 (105)
T ss_dssp EEEEETT---EEEEECHHHHHTSCS--SSTTSGGGGGGEEGGGTEEEECSCTTTHHHHHHHH
T ss_pred EEEEECC---EEEEEeHHHHhcCCC--ccccccCCcccccCCCCcEEEeCCcHHHHHHHHHH
Confidence 4566775 8888877655 2332 12222333333444458899999999999998764
No 16
>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens}
Probab=39.59 E-value=35 Score=21.28 Aligned_cols=50 Identities=22% Similarity=0.230 Sum_probs=36.2
Q ss_pred EEEEeecCcceEEEEecccc--CchHHHHHHHHHHHhcCCccCCCceeee-ccHHHHHHHHhhc
Q 040932 36 IAVYVGEMERKRFVVPISYL--NHPLFADLLNRAEEEFGFNHPMGGLTIP-CKEDAFIDLTSRL 96 (97)
Q Consensus 36 ~~VyVG~~~~~RfvVp~~~L--~hP~F~~LL~~aeEEfG~~~~~G~L~IP-C~~~~F~~vl~~l 96 (97)
+.+.||+ ++|-+.-..| ..|.|++++... . + +.|.|| .+.+.|+.++..+
T Consensus 27 v~l~v~~---~~f~aHk~vLaa~S~yF~~~f~~~-----~--~-~~i~l~~~~~~~f~~ll~~i 79 (119)
T 3b84_A 27 ATLDVGG---LVFKAHWSVLACCSHFFQSLYGDG-----S--G-GSVVLPAGFAEIFGLLLDFF 79 (119)
T ss_dssp EEEEETT---EEEEECHHHHHHHCHHHHHHHTTT-----T--C-CCEEECGGGHHHHHHHHHHH
T ss_pred eEEEECC---EEEEeeHHHHhhcCHHHHHHHCCC-----C--C-CeEEeCCCCHHHHHHHHHHH
Confidence 4455675 6788877777 479999998653 2 3 579998 5678899888753
No 17
>1yu8_X Villin; alpha helix, 3-10 helix, structural protein; 1.45A {Gallus gallus} SCOP: a.14.1.1 PDB: 1qqv_A 1yu5_X 2rjx_A 2rjy_A 1yu7_X 2rjv_A 2rjw_A 3nkj_A 3myc_A 3mya_A 3mye_X 1unc_A
Probab=35.36 E-value=11 Score=23.29 Aligned_cols=21 Identities=14% Similarity=0.229 Sum_probs=18.9
Q ss_pred ccccCchHHHHHHHHHHHhcC
Q 040932 52 ISYLNHPLFADLLNRAEEEFG 72 (97)
Q Consensus 52 ~~~L~hP~F~~LL~~aeEEfG 72 (97)
-.||+.-.|++++.++.+||-
T Consensus 30 E~yLsdedF~~vFgms~~eF~ 50 (67)
T 1yu8_X 30 ENHLSDEDFKAVFGMTRSAFA 50 (67)
T ss_dssp GGGSCHHHHHHHHSSCHHHHH
T ss_pred HhcCCHHHHHHHHCcCHHHHH
Confidence 379999999999999999984
No 18
>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} SCOP: d.42.1.0 PDB: 3ohv_A
Probab=34.89 E-value=27 Score=21.83 Aligned_cols=52 Identities=17% Similarity=0.179 Sum_probs=37.2
Q ss_pred EEEEeecCcceEEEEeccccC--chHHHHHHHHHHHhcCCccCCCceeee--ccHHHHHHHHhhc
Q 040932 36 IAVYVGEMERKRFVVPISYLN--HPLFADLLNRAEEEFGFNHPMGGLTIP--CKEDAFIDLTSRL 96 (97)
Q Consensus 36 ~~VyVG~~~~~RfvVp~~~L~--hP~F~~LL~~aeEEfG~~~~~G~L~IP--C~~~~F~~vl~~l 96 (97)
+.+.||+ ++|-+.-..|. .|.|++++.....| . ..+.|| .+.+.|+.++..+
T Consensus 35 v~l~v~~---~~f~aHk~vLaa~S~yF~~~f~~~~~e-----~-~~i~l~~~~~~~~f~~~l~~i 90 (125)
T 3ohu_A 35 VTLIVER---KEFRAHRAVLAACSEYFWQALVGQTKN-----D-LVVSLPEEVTARGFGPLLQFA 90 (125)
T ss_dssp EEEEETT---EEEEECHHHHHHHBHHHHHHHTTCCCS-----S-CEEECCTTCCHHHHHHHHHHH
T ss_pred eEEEECC---EEEechHHHHHHcCHHHHHHhcCCCCC-----C-cEEEeCCCCCHHHHHHHHHhH
Confidence 4566775 67777776664 68999998764332 2 578887 7899999988754
No 19
>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A
Probab=34.76 E-value=41 Score=20.91 Aligned_cols=49 Identities=10% Similarity=0.074 Sum_probs=35.6
Q ss_pred EEEEeecCcceEEEEecccc--CchHHHHHHHHHHHhcCCccCCCceeeec-cHHHHHHHHhhc
Q 040932 36 IAVYVGEMERKRFVVPISYL--NHPLFADLLNRAEEEFGFNHPMGGLTIPC-KEDAFIDLTSRL 96 (97)
Q Consensus 36 ~~VyVG~~~~~RfvVp~~~L--~hP~F~~LL~~aeEEfG~~~~~G~L~IPC-~~~~F~~vl~~l 96 (97)
+.+.||+ ++|-+.-..| ..|.|++++.. ++ ..+.++- +.+.|+.++..+
T Consensus 30 v~l~v~~---~~~~aHk~vLaa~S~yF~~~f~~--------~~-~~i~l~~~~~~~f~~ll~~~ 81 (119)
T 2q81_A 30 CTFVVDG---VHFKAHKAVLAACSEYFKMLFVD--------QK-DVVHLDISNAAGLGQVLEFM 81 (119)
T ss_dssp EEEEETT---EEEEECHHHHHHHCHHHHHHHHH--------CC-SGGGGGGCCHHHHHHHHHHH
T ss_pred eEEEECC---EEEehhHHHHHHcCHHHHHHHcC--------CC-CEEEeCCCCHHHHHHHHHHH
Confidence 4456775 7888888877 48999999975 12 4677775 678899888653
No 20
>1w8x_N Protein P31, protein C, GPC; virus, P3 major capsid protein, P30 TAPE measure, P31 penton protein, P16 membrane protein; 4.20A {Enterobacteria phage PRD1} SCOP: i.6.1.1
Probab=31.84 E-value=9.9 Score=26.00 Aligned_cols=28 Identities=32% Similarity=0.607 Sum_probs=17.6
Q ss_pred CCCeEEEEeecCcceEEE----------EeccccCchHHH
Q 040932 32 PRGHIAVYVGEMERKRFV----------VPISYLNHPLFA 61 (97)
Q Consensus 32 pkG~~~VyVG~~~~~Rfv----------Vp~~~L~hP~F~ 61 (97)
.+||+|+.|-. +-.|+ +|+-|||.|+-+
T Consensus 86 ~QGYfPlL~~~--~~KFv~~~~~~GKks~P~~FlNF~IA~ 123 (126)
T 1w8x_N 86 KQGYFPLLVPG--RAKFVARHLGSGKKSVPLFFLNFTIAQ 123 (126)
T ss_dssp CCSSCCEEECC--SSSSEEEEEEEESSCCCCSCCC-----
T ss_pred Ccccceeeccc--hhhhhhhhhcCCCcceeeEEEeceeee
Confidence 48999999964 45555 688888888644
No 21
>1qzp_A Dematin; villin headpiece, actin binding domain, protein binding; NMR {Homo sapiens} SCOP: a.14.1.1 PDB: 1zv6_A
Probab=31.61 E-value=9.5 Score=23.48 Aligned_cols=21 Identities=29% Similarity=0.406 Sum_probs=18.9
Q ss_pred ccccCchHHHHHHHHHHHhcC
Q 040932 52 ISYLNHPLFADLLNRAEEEFG 72 (97)
Q Consensus 52 ~~~L~hP~F~~LL~~aeEEfG 72 (97)
-.||+.-.|++++.++.+||-
T Consensus 31 E~yLsdedF~~vFgmsr~eF~ 51 (68)
T 1qzp_A 31 ERHLSAEDFSRVFAMSPEEFG 51 (68)
T ss_dssp GGGBCHHHHHHHSSSCHHHHH
T ss_pred HhhCCHHHHHHHHCcCHHHHH
Confidence 479999999999999999983
No 22
>3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp}
Probab=31.36 E-value=1.3e+02 Score=22.79 Aligned_cols=53 Identities=15% Similarity=0.244 Sum_probs=38.5
Q ss_pred CCCeEEEEeecCcceEEEEeccccCchHHHHHHHHHHHhcCCccCCCceeee--ccHHHHHHHHhhcC
Q 040932 32 PRGHIAVYVGEMERKRFVVPISYLNHPLFADLLNRAEEEFGFNHPMGGLTIP--CKEDAFIDLTSRLH 97 (97)
Q Consensus 32 pkG~~~VyVG~~~~~RfvVp~~~L~hP~F~~LL~~aeEEfG~~~~~G~L~IP--C~~~~F~~vl~~l~ 97 (97)
+.|...|.||+ +. . .-....--.++.+|.|++.. .+.+| ++.++++..+..||
T Consensus 33 ~P~Lavilvg~-dp------a----S~~Yv~~k~k~~~~~Gi~~~--~~~lp~~~s~~ell~~I~~lN 87 (285)
T 3p2o_A 33 ESCLAVILVGD-NP------A----SQTYVKSKAKACEECGIKSL--VYHLNENITQNELLALINTLN 87 (285)
T ss_dssp CCEEEEEEESC-CH------H----HHHHHHHHHHHHHHHTCEEE--EEEECTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEEeCC-CH------H----HHHHHHHHHHHHHHcCCeEE--EEECCCCCCHHHHHHHHHHHh
Confidence 56889999998 21 0 11235567788899999875 68888 88888888887764
No 23
>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens}
Probab=31.26 E-value=70 Score=20.61 Aligned_cols=54 Identities=17% Similarity=0.368 Sum_probs=38.1
Q ss_pred EEEEeecCcceEEEEecccc--CchHHHHHHHHHHHhcCCccCCCceeee-ccHHHHHHHHhhc
Q 040932 36 IAVYVGEMERKRFVVPISYL--NHPLFADLLNRAEEEFGFNHPMGGLTIP-CKEDAFIDLTSRL 96 (97)
Q Consensus 36 ~~VyVG~~~~~RfvVp~~~L--~hP~F~~LL~~aeEEfG~~~~~G~L~IP-C~~~~F~~vl~~l 96 (97)
+.+.||+ ++|-+.-..| ..|.|++++...-.| ... ..+.|| .+.+.|+.++..+
T Consensus 37 v~l~v~~---~~~~~Hk~iL~~~S~~F~~~f~~~~~e---~~~-~~i~l~~~~~~~f~~~l~~~ 93 (172)
T 3htm_A 37 CCLCVAG---QEFQAHKAILAARSPVFSAMFEHEMEE---SKK-NRVEINDVEPEVFKEMMCFI 93 (172)
T ss_dssp EEEEETT---EEEEECHHHHHHHCHHHHHHHHSCCCG---GGT-TEEEECSSCHHHHHHHHHHH
T ss_pred eEEEECC---EEEEeeHHHHHHcCHHHHHHHccCccc---cCC-CeEEecCCCHHHHHHHHHHH
Confidence 5666775 6788887777 479999999853211 122 578887 6889999888654
No 24
>1ujs_A Actin-binding LIM protein homologue; VHP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, structural protein; NMR {Homo sapiens} SCOP: a.14.1.1 PDB: 2l3x_A
Probab=31.06 E-value=14 Score=23.93 Aligned_cols=21 Identities=19% Similarity=0.235 Sum_probs=19.1
Q ss_pred ccccCchHHHHHHHHHHHhcC
Q 040932 52 ISYLNHPLFADLLNRAEEEFG 72 (97)
Q Consensus 52 ~~~L~hP~F~~LL~~aeEEfG 72 (97)
-.||+.-.|++++.++.+||-
T Consensus 45 E~YLSdedF~~vFgMsr~eF~ 65 (88)
T 1ujs_A 45 ERHLSQEEFYQVFGMTISEFD 65 (88)
T ss_dssp GGGSCTTHHHHHHSSCHHHHT
T ss_pred HhcCCHHHHHHHHCcCHHHHH
Confidence 379999999999999999984
No 25
>1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2
Probab=30.62 E-value=1.3e+02 Score=22.81 Aligned_cols=54 Identities=24% Similarity=0.420 Sum_probs=38.7
Q ss_pred CCCCeEEEEeecCcceEEEEeccccCchHHHHHHHHHHHhcCCccCCCceeee--ccHHHHHHHHhhcC
Q 040932 31 VPRGHIAVYVGEMERKRFVVPISYLNHPLFADLLNRAEEEFGFNHPMGGLTIP--CKEDAFIDLTSRLH 97 (97)
Q Consensus 31 vpkG~~~VyVG~~~~~RfvVp~~~L~hP~F~~LL~~aeEEfG~~~~~G~L~IP--C~~~~F~~vl~~l~ 97 (97)
.+.|...|.||+ +. ..-....--.++.||.|+... ...+| ++.++++..+..||
T Consensus 32 ~~P~LavilvG~-dp----------aS~~Yv~~k~k~~~~~Gi~~~--~~~lp~~~s~~ell~~I~~lN 87 (288)
T 1b0a_A 32 RAPGLAVVLVGS-NP----------ASQIYVASKRKACEEVGFVSR--SYDLPETTSEAELLELIDTLN 87 (288)
T ss_dssp CCCEEEEEEESC-CH----------HHHHHHHHHHHHHHHHTCEEC--CEEECTTCCHHHHHHHHHHHH
T ss_pred CCceEEEEEeCC-Ch----------hHHHHHHHHHHHHHHcCCEEE--EEECCCCCCHHHHHHHHHHhc
Confidence 446899999998 21 122345556788999999976 57787 57788888887764
No 26
>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A
Probab=29.91 E-value=51 Score=20.48 Aligned_cols=49 Identities=16% Similarity=0.294 Sum_probs=35.2
Q ss_pred EEEEeecCcceEEEEecccc--CchHHHHHHHHHHHhcCCccCCCceeee-ccHHHHHHHHhhc
Q 040932 36 IAVYVGEMERKRFVVPISYL--NHPLFADLLNRAEEEFGFNHPMGGLTIP-CKEDAFIDLTSRL 96 (97)
Q Consensus 36 ~~VyVG~~~~~RfvVp~~~L--~hP~F~~LL~~aeEEfG~~~~~G~L~IP-C~~~~F~~vl~~l 96 (97)
+.+.||+ ++|-+.-..| ..|.|++++.. .. ..+.|+ .+.+.|+.++..+
T Consensus 31 v~l~v~~---~~f~aHk~vLaa~S~yF~~~f~~--------~~-~~i~l~~~~~~~f~~ll~~~ 82 (121)
T 1buo_A 31 VVIMVDS---QEFHAHRTVLACTSKMFEILFHR--------NS-QHYTLDFLSPKTFQQILEYA 82 (121)
T ss_dssp EEEEESS---CEEEECHHHHHHHCHHHHHHTTS--------CC-SEEEECSSCHHHHHHHHHHH
T ss_pred EEEEECC---EEEehhHHHHhhcCHHHHHHHcC--------CC-cEEEeCCCCHHHHHHHHHhh
Confidence 4455675 6787777766 67899998853 12 578887 7888999888643
No 27
>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics, struct genomics consortium, SGC, structural protein; 2.40A {Homo sapiens}
Probab=29.74 E-value=64 Score=20.92 Aligned_cols=56 Identities=9% Similarity=0.077 Sum_probs=37.1
Q ss_pred EEEEeecCcceEEEEecccc--CchHHHHHHHHHHHhcCCccCCCceeee-ccHHHHHHHHhhc
Q 040932 36 IAVYVGEMERKRFVVPISYL--NHPLFADLLNRAEEEFGFNHPMGGLTIP-CKEDAFIDLTSRL 96 (97)
Q Consensus 36 ~~VyVG~~~~~RfvVp~~~L--~hP~F~~LL~~aeEEfG~~~~~G~L~IP-C~~~~F~~vl~~l 96 (97)
+.+.||+ ++|-+.-..| ..|.|++++...-.|-. ... ..|.|+ .+.+.|+.++..+
T Consensus 50 v~l~v~~---~~f~aHk~vLaa~S~yF~~mf~~~~~e~e-~~~-~~I~l~~v~~~~f~~lL~fi 108 (144)
T 2ppi_A 50 AHLVLDG---EEIPVQKNILAAASPYIRTKLNYNPPKDD-GST-YKIELEGISVMVMREILDYI 108 (144)
T ss_dssp EEEEETT---EEEEECHHHHHHHCHHHHHHHHHCC------CC-CEEECCSSCHHHHHHHHHHH
T ss_pred eEEEECC---EEEehHHHHHHHcCHHHHHHHcCCCcccc-CCC-cEEEeCCCCHHHHHHHHHHH
Confidence 4455665 7888887777 48999999975322110 112 578887 4889999988754
No 28
>2k6m_S Supervillin; SVHP, HP, headpiece, archvillin, actin capping, actin-binding, alternative splicing, calcium, cytoplasm, cytoskeleton, membrane; NMR {Homo sapiens} PDB: 2k6n_A
Probab=29.61 E-value=12 Score=23.04 Aligned_cols=21 Identities=24% Similarity=0.355 Sum_probs=19.2
Q ss_pred ccccCchHHHHHHHHHHHhcC
Q 040932 52 ISYLNHPLFADLLNRAEEEFG 72 (97)
Q Consensus 52 ~~~L~hP~F~~LL~~aeEEfG 72 (97)
-.||+.-.|++++.++.+||-
T Consensus 30 E~yLsdedF~~vFgmsr~eF~ 50 (67)
T 2k6m_S 30 EIYLTDEDFEFALDMTRDEYN 50 (67)
T ss_dssp GGGSCHHHHHHHTSSCHHHHT
T ss_pred HhhCCHHHHHHHHCcCHHHHH
Confidence 479999999999999999985
No 29
>2lmc_A Bacterial RNA polymerase inhibitor; transferase, transcription; NMR {Enterobacteria phage T7} PDB: 2wnm_A
Probab=29.50 E-value=37 Score=21.84 Aligned_cols=14 Identities=21% Similarity=0.176 Sum_probs=9.5
Q ss_pred HHHHHHHHHHhcCC
Q 040932 60 FADLLNRAEEEFGF 73 (97)
Q Consensus 60 F~~LL~~aeEEfG~ 73 (97)
+-+-|+.||+||+-
T Consensus 56 LdEAlE~AE~eYee 69 (84)
T 2lmc_A 56 LDEALELAEWQYVP 69 (84)
T ss_dssp HHHHHHHHHHTTGG
T ss_pred HHHHHHHHHHHhhh
Confidence 45666777878763
No 30
>3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis}
Probab=29.47 E-value=1.4e+02 Score=22.64 Aligned_cols=54 Identities=19% Similarity=0.409 Sum_probs=38.1
Q ss_pred CCCCeEEEEeecCcceEEEEeccccCchHHHHHHHHHHHhcCCccCCCceeee--ccHHHHHHHHhhcC
Q 040932 31 VPRGHIAVYVGEMERKRFVVPISYLNHPLFADLLNRAEEEFGFNHPMGGLTIP--CKEDAFIDLTSRLH 97 (97)
Q Consensus 31 vpkG~~~VyVG~~~~~RfvVp~~~L~hP~F~~LL~~aeEEfG~~~~~G~L~IP--C~~~~F~~vl~~l~ 97 (97)
.+.|...|.||+ +. . .-....--.++.+|.|++.. .+.+| ++.++++..+..||
T Consensus 33 ~~P~Lavilvg~-dp------a----S~~Yv~~k~k~~~~~Gi~~~--~~~lp~~~s~~ell~~I~~lN 88 (285)
T 3l07_A 33 ITPKLVAIIVGN-DP------A----SKTYVASKEKACAQVGIDSQ--VITLPEHTTESELLELIDQLN 88 (285)
T ss_dssp CCCEEEEEEESC-CH------H----HHHHHHHHHHHHHHHTCEEE--EEEECTTCCHHHHHHHHHHHH
T ss_pred CCceEEEEEECC-CH------H----HHHHHHHHHHHHHHcCCeEE--EEECCCCCCHHHHHHHHHHHh
Confidence 456899999998 21 0 11334667788999999875 57786 67788888877664
No 31
>1y6i_A Mg-chelatase cofactor GUN4; helix-bundle, porphyrin binding, ligand binding protein; 1.78A {Synechocystis SP} SCOP: a.118.1.22 a.261.1.1
Probab=29.38 E-value=3.1 Score=31.40 Aligned_cols=30 Identities=23% Similarity=0.462 Sum_probs=20.5
Q ss_pred cCCCCCeEEEEeecCcceEEEEeccccCchHHH
Q 040932 29 QVVPRGHIAVYVGEMERKRFVVPISYLNHPLFA 61 (97)
Q Consensus 29 ~~vpkG~~~VyVG~~~~~RfvVp~~~L~hP~F~ 61 (97)
..+|+||+|..-.- +=..+=.+.|+||.|.
T Consensus 200 l~AP~GHLP~~~~l---rG~~l~~~ll~hpa~~ 229 (233)
T 1y6i_A 200 LSAPQGHLPLLNQL---RGVRVAESLYRHPVWS 229 (233)
T ss_dssp TTSCTTCCSCCCCT---TCTHHHHHHHTSTHHH
T ss_pred CCCCCCCCCCcccc---chHHHHHHHHCCcccc
Confidence 47899999986532 1112567789999884
No 32
>1z3x_A Putative cytidyltransferase; transferase activator; 1.50A {Thermosynechococcus elongatus} SCOP: a.118.1.22 a.261.1.1 PDB: 1z3y_A
Probab=29.28 E-value=2.5 Score=32.03 Aligned_cols=29 Identities=31% Similarity=0.494 Sum_probs=19.7
Q ss_pred cCCCCCeEEEEeecCcceEEEEeccccCchHH
Q 040932 29 QVVPRGHIAVYVGEMERKRFVVPISYLNHPLF 60 (97)
Q Consensus 29 ~~vpkG~~~VyVG~~~~~RfvVp~~~L~hP~F 60 (97)
..+|+||+|..-.- +=..+=.+.|+||.|
T Consensus 208 l~AP~GHLP~~~~l---rGv~l~~~ll~hpa~ 236 (238)
T 1z3x_A 208 LSAPRGHLPLTNQL---RGVQVLNALLNHPAW 236 (238)
T ss_dssp TTSCTTCCSCCCCT---TCSHHHHHHHTCGGG
T ss_pred CCCCCCCCCcCccc---ccHHHHHHHHcCccc
Confidence 47899999985421 222355678888876
No 33
>3pmi_A PWWP domain-containing protein MUM1; structural genomics consortium, SGC, protein binding, nucLeu; HET: UNL; 2.82A {Homo sapiens}
Probab=29.25 E-value=18 Score=25.20 Aligned_cols=30 Identities=37% Similarity=0.463 Sum_probs=25.9
Q ss_pred CcceEEEEeccccCch---HHHHHHHHHHHhcC
Q 040932 43 MERKRFVVPISYLNHP---LFADLLNRAEEEFG 72 (97)
Q Consensus 43 ~~~~RfvVp~~~L~hP---~F~~LL~~aeEEfG 72 (97)
.+++=|.||+.-|+|= .-++|+++|.|+||
T Consensus 46 ~ekrGi~V~LrrLK~fDC~ek~~L~~rAre~Y~ 78 (134)
T 3pmi_A 46 PKMKGFTVSLKSLKHFDCKEKQTLLNQAREDFN 78 (134)
T ss_dssp TTSCCEEEEGGGCEETTSTTHHHHHHHHTTTCH
T ss_pred cccCceEeEcccCCCCChHhHHHHHHHHHHHhc
Confidence 3678899999998885 48999999999998
No 34
>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC domain,transcription factor, protein-PROT interaction; 2.44A {Homo sapiens}
Probab=26.85 E-value=56 Score=20.42 Aligned_cols=52 Identities=19% Similarity=0.284 Sum_probs=35.0
Q ss_pred EEEEeecCcceEEEEecccc--CchHHHHHHHHHHHhcCCccCCCceeee--ccHHHHHHHHhhc
Q 040932 36 IAVYVGEMERKRFVVPISYL--NHPLFADLLNRAEEEFGFNHPMGGLTIP--CKEDAFIDLTSRL 96 (97)
Q Consensus 36 ~~VyVG~~~~~RfvVp~~~L--~hP~F~~LL~~aeEEfG~~~~~G~L~IP--C~~~~F~~vl~~l 96 (97)
+.+.||+ ++|-+.-..| ..|.|++++...-.| . ..+.+| .+...|+.++..+
T Consensus 32 v~l~v~~---~~~~aHk~vLaa~S~yF~~mf~~~~~e-----~-~~i~l~~~v~~~~f~~lL~~i 87 (124)
T 2ihc_A 32 VTIFVEG---QRFRAHRSVLAACSSYFHSRIVGQADG-----E-LNITLPEEVTVKGFEPLIQFA 87 (124)
T ss_dssp EEEEETT---EEEEECHHHHHHHBHHHHHHHTTC--------C-EEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECC---EEEecHHHHHHHcCHHHHHHHcCCCCC-----C-ceEeecCCcCHHHHHHHHHHh
Confidence 3456665 6787777777 579999998754322 2 467774 6788898887643
No 35
>1zav_U 50S ribosomal protein L7/L12; ribosome structure and function, L10-L12 complex structure, L10E structure, L7/12 ribosomal stalk; 1.90A {Thermotoga maritima} SCOP: a.108.1.1 PDB: 1zaw_U 1zax_U 1dd3_C
Probab=26.14 E-value=42 Score=17.43 Aligned_cols=13 Identities=38% Similarity=0.930 Sum_probs=10.5
Q ss_pred HHHHHHHHHHhcC
Q 040932 60 FADLLNRAEEEFG 72 (97)
Q Consensus 60 F~~LL~~aeEEfG 72 (97)
..+|.+.-||+||
T Consensus 18 l~eLvk~lEe~fG 30 (30)
T 1zav_U 18 LAELVKKLEDKFG 30 (30)
T ss_dssp HHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhC
Confidence 4678888899998
No 36
>2bkf_A Zinc-finger protein NBR1 (NEXT to breast cancer 1; PB1 domain, interaction domain, Z finger; 1.56A {Homo sapiens} SCOP: d.15.2.2 PDB: 2g4s_A
Probab=26.05 E-value=1.2e+02 Score=19.39 Aligned_cols=49 Identities=14% Similarity=0.224 Sum_probs=35.9
Q ss_pred EeecCcceEEEEeccccCchHHHHHHHHHHHhcCC--------ccCCCceeeeccHHHHHH
Q 040932 39 YVGEMERKRFVVPISYLNHPLFADLLNRAEEEFGF--------NHPMGGLTIPCKEDAFID 91 (97)
Q Consensus 39 yVG~~~~~RfvVp~~~L~hP~F~~LL~~aeEEfG~--------~~~~G~L~IPC~~~~F~~ 91 (97)
|-| +.+||. ++++..|.+.+|-.+-..-||+ |.++-.++|.=+.+..|-
T Consensus 13 f~g--e~~rf~--vs~~~~~tweel~~mvk~~f~L~~~~ikY~DEenD~v~i~Sq~E~eEA 69 (87)
T 2bkf_A 13 FKN--EIQSFL--VSDPENTTWADIEAMVKVSFDLNTIQIKYLDEENEEVSINSQGEYEEA 69 (87)
T ss_dssp ETT--EEEEEE--ESCGGGCCHHHHHHHHHHHHTCSSEEEEEECTTSCEEEECSHHHHHHH
T ss_pred EcC--CeeEEE--eccCCCCCHHHHHHHHHHHcCCCceEEEEEcCCCCEEEEecHHHHHHH
Confidence 446 478875 5789999999999999999995 344557788776554443
No 37
>3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A
Probab=25.93 E-value=1.1e+02 Score=23.15 Aligned_cols=54 Identities=11% Similarity=0.151 Sum_probs=38.3
Q ss_pred CCCCCeEEEEeecCcceEEEEeccccCchHHHHHHHHHHHhcCCccCCCceeee--ccHHHHHHHHhhcC
Q 040932 30 VVPRGHIAVYVGEMERKRFVVPISYLNHPLFADLLNRAEEEFGFNHPMGGLTIP--CKEDAFIDLTSRLH 97 (97)
Q Consensus 30 ~vpkG~~~VyVG~~~~~RfvVp~~~L~hP~F~~LL~~aeEEfG~~~~~G~L~IP--C~~~~F~~vl~~l~ 97 (97)
..+.|...|.||+ +.. .-....--.++.||.|+ .. .+.+| ++.++++..+..||
T Consensus 25 ~~~P~Lavilvg~-dpa----------S~~Yv~~k~k~~~~~Gi-~~--~~~lp~~~s~~ell~~I~~lN 80 (276)
T 3ngx_A 25 GLEPSLKLIQIGD-NEA----------ASIYARAKIRRGKKIGI-AV--DLEKYDDISMKDLLKRIDDLA 80 (276)
T ss_dssp TCCCEEEEEEESC-CHH----------HHHHHHHHHHHHHHHTC-EE--EEEEESSCCHHHHHHHHHHHH
T ss_pred CCCCcEEEEEeCC-CHH----------HHHHHHHHHHHHHHCCe-EE--EEECCCCCCHHHHHHHHHHHc
Confidence 3456899999998 210 11245667788999999 54 67888 77888888887764
No 38
>4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major}
Probab=25.86 E-value=1.9e+02 Score=22.06 Aligned_cols=54 Identities=17% Similarity=0.321 Sum_probs=38.1
Q ss_pred CCCCeEEEEeecCcceEEEEeccccCchHHHHHHHHHHHhcCCccCCCceeee--ccHHHHHHHHhhcC
Q 040932 31 VPRGHIAVYVGEMERKRFVVPISYLNHPLFADLLNRAEEEFGFNHPMGGLTIP--CKEDAFIDLTSRLH 97 (97)
Q Consensus 31 vpkG~~~VyVG~~~~~RfvVp~~~L~hP~F~~LL~~aeEEfG~~~~~G~L~IP--C~~~~F~~vl~~l~ 97 (97)
.+.|...|.||+ +. ..-....--.++.+|.|++.. .+.+| ++.++++..+..||
T Consensus 36 ~~P~Lavilvg~-dp----------aS~~Yv~~k~k~~~~~Gi~~~--~~~lp~~~s~~ell~~I~~lN 91 (300)
T 4a26_A 36 RVPGLASIIVGQ-RM----------DSKKYVQLKHKAAAEVGMASF--NVELPEDISQEVLEVNVEKLN 91 (300)
T ss_dssp CCCEEEEEEESC-CH----------HHHHHHHHHHHHHHHTTCEEE--EEEECTTCCHHHHHHHHHHHH
T ss_pred CCceEEEEEeCC-CH----------HHHHHHHHHHHHHHHcCCeEE--EEECCCCCCHHHHHHHHHHhc
Confidence 556899999998 21 012345566788899999865 57775 67788888887664
No 39
>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain containing 33, kaiso transcriptio ZNF-kaiso, ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB: 3m4t_A 3m8v_A
Probab=24.92 E-value=62 Score=20.12 Aligned_cols=49 Identities=16% Similarity=0.363 Sum_probs=34.2
Q ss_pred EEEEeecCcceEEEEecccc--CchHHHHHHHHHHHhcCCccCCCceeee-ccHHHHHHHHhhc
Q 040932 36 IAVYVGEMERKRFVVPISYL--NHPLFADLLNRAEEEFGFNHPMGGLTIP-CKEDAFIDLTSRL 96 (97)
Q Consensus 36 ~~VyVG~~~~~RfvVp~~~L--~hP~F~~LL~~aeEEfG~~~~~G~L~IP-C~~~~F~~vl~~l 96 (97)
+.+.||+ ++|-+.-..| ..|.|++++... . ..+.++ .+.+.|+.++..+
T Consensus 34 v~l~v~~---~~f~aHk~vLaa~S~~F~~~f~~~--------~-~~i~l~~~~~~~f~~~l~~~ 85 (116)
T 3fkc_A 34 VTVIVED---RKFRAHKNILSASSTYFHQLFSVA--------G-QVVELSFIRAEIFAEILNYI 85 (116)
T ss_dssp EEEEETT---EEEEECHHHHHHHCHHHHHHTTSC--------C-SEEEECSSCHHHHHHHHHHH
T ss_pred EEEEECC---EEEehhHHHHHHcCHHHHHHHcCC--------C-CEEEeCCCCHHHHHHHHHhh
Confidence 3556765 6777766655 458898887643 2 578886 7889999888754
No 40
>3qli_A Coenzyme A transferase; COEN transferase; 1.90A {Yersinia pestis} PDB: 3qlk_A 3s8d_A
Probab=23.79 E-value=44 Score=27.07 Aligned_cols=44 Identities=30% Similarity=0.362 Sum_probs=30.9
Q ss_pred cCCCCCeEEEEeec---------CcceEEEEeccccCchHHHHHHHHHHHhcCC
Q 040932 29 QVVPRGHIAVYVGE---------MERKRFVVPISYLNHPLFADLLNRAEEEFGF 73 (97)
Q Consensus 29 ~~vpkG~~~VyVG~---------~~~~RfvVp~~~L~hP~F~~LL~~aeEEfG~ 73 (97)
...|++++-+.|.| .-++|-.-=++ +-||.||+.|.+++++.|+
T Consensus 402 vtt~~~~v~~vvTE~Gva~l~G~s~~eRa~~lI~-iAHPdfR~~L~~~A~~~~~ 454 (455)
T 3qli_A 402 VTTPRIDTHYIVTEFGAVNLKGLSSTERALRIIE-LAHPDFRDELTQAAKKMHL 454 (455)
T ss_dssp CSBCTTTCCEEEETTEEEECTTCCHHHHHHHHHT-TSCHHHHHHHHHHHHHTTC
T ss_pred cccCcccccEEEeccEEEECCCCCHHHHHHHHHH-ccCcchHHHHHHHHHHcCC
Confidence 45688888777765 12344433344 8899999999998888764
No 41
>4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1}
Probab=23.50 E-value=2.4e+02 Score=21.39 Aligned_cols=55 Identities=22% Similarity=0.422 Sum_probs=37.9
Q ss_pred CCCCCeEEEEeecCcceEEEEeccccCchHHHHHHHHHHHhcCCccCCCceeee--ccHHHHHHHHhhcC
Q 040932 30 VVPRGHIAVYVGEMERKRFVVPISYLNHPLFADLLNRAEEEFGFNHPMGGLTIP--CKEDAFIDLTSRLH 97 (97)
Q Consensus 30 ~vpkG~~~VyVG~~~~~RfvVp~~~L~hP~F~~LL~~aeEEfG~~~~~G~L~IP--C~~~~F~~vl~~l~ 97 (97)
..+.|...|.||+ +. . .-....--.++.+|.|++.. .+.+| ++.++++..+..||
T Consensus 33 ~~~P~Lavilvg~-dp------a----S~~Yv~~k~k~~~~~Gi~~~--~~~lp~~~s~~ell~~I~~lN 89 (286)
T 4a5o_A 33 LRVPGLAVILVGT-DP------A----SQVYVAHKRKDCEEVGFLSQ--AYDLPAETSQDDLLALIDRLN 89 (286)
T ss_dssp CCCCEEEEEEESC-CH------H----HHHHHHHHHHHHHHTTCEEE--EEEECTTCCHHHHHHHHHHHH
T ss_pred CCCceEEEEEeCC-CH------H----HHHHHHHHHHHHHHcCCeEE--EEECCCCCCHHHHHHHHHHHh
Confidence 3456889999998 21 0 11235566788899999875 57776 66788888877664
No 42
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=22.95 E-value=1.5e+02 Score=18.72 Aligned_cols=28 Identities=14% Similarity=0.114 Sum_probs=23.4
Q ss_pred cceEEEEeccccCchHHHHHHHHHHHhcCCcc
Q 040932 44 ERKRFVVPISYLNHPLFADLLNRAEEEFGFNH 75 (97)
Q Consensus 44 ~~~RfvVp~~~L~hP~F~~LL~~aeEEfG~~~ 75 (97)
+-.|+.||. ...|++|.++-.+-|++..
T Consensus 16 di~~~~v~~----~i~~~~L~~kv~~~~~~~~ 43 (89)
T 1vd2_A 16 DIMITHFEP----SISFEGLCNEVRDMCSFDN 43 (89)
T ss_dssp CEEEEEECT----TCCHHHHHHHHHHHTTCCS
T ss_pred eEEEEECCC----CCCHHHHHHHHHHHhCCCC
Confidence 577888886 5689999999999999863
No 43
>1wy3_A Villin; structural protein; HET: NLE; 0.95A {Synthetic} PDB: 1wy4_A 1yri_A* 1yrf_A* 2f4k_A* 1vii_A 3trv_A* 3trw_A 3tjw_B* 3trv_B* 3try_A* 2ppz_A 2jm0_A* 3tjw_A* 3iur_B*
Probab=22.24 E-value=25 Score=19.01 Aligned_cols=17 Identities=18% Similarity=0.350 Sum_probs=13.6
Q ss_pred cCchHHHHHHHHHHHhc
Q 040932 55 LNHPLFADLLNRAEEEF 71 (97)
Q Consensus 55 L~hP~F~~LL~~aeEEf 71 (97)
|+.-.|++++.++.+||
T Consensus 1 Lsd~dF~~vFgmsr~eF 17 (35)
T 1wy3_A 1 LSDEDFKAVFGMTRSAF 17 (35)
T ss_dssp CCHHHHHHHHSSCHHHH
T ss_pred CCHHHHHHHHCCCHHHH
Confidence 56677888888888887
No 44
>3ezo_A Malonyl COA-acyl carrier protein transacylase; ssgcid, acyl-carrier-protein S-malonyltransferase, acyltransferase, transferase; 2.05A {Burkholderia pseudomallei 1710B}
Probab=21.60 E-value=55 Score=24.31 Aligned_cols=40 Identities=13% Similarity=0.251 Sum_probs=26.2
Q ss_pred CeEEEEeecCcceEEEEeccccCchHHHHHHHHHHHhcCCc
Q 040932 34 GHIAVYVGEMERKRFVVPISYLNHPLFADLLNRAEEEFGFN 74 (97)
Q Consensus 34 G~~~VyVG~~~~~RfvVp~~~L~hP~F~~LL~~aeEEfG~~ 74 (97)
-..-||-|.+ .+..=.-.+.+++|.|++.++++.+-+|++
T Consensus 10 ~~~f~F~GQG-sQ~~gMg~~L~~~p~fr~~~~~~~~~lg~~ 49 (318)
T 3ezo_A 10 KFAFVFPGQG-SQSVGMLNAFADVAVVRETLDEASDALGQD 49 (318)
T ss_dssp CEEEEECCTT-CCCTTTTGGGTTCHHHHHHHHHHHHHHSSC
T ss_pred CeEEEECCcc-hhhhhHHHHHhhCHHHHHHHHHHHHHhCCC
Confidence 4556777762 111112223338999999999999998875
No 45
>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus}
Probab=21.57 E-value=56 Score=20.84 Aligned_cols=50 Identities=20% Similarity=0.234 Sum_probs=33.8
Q ss_pred EEEEeecCcceEEEEecccc--CchHHHHHHHHHHHhcCCccCCCceeee-ccHHHHHHHHhhc
Q 040932 36 IAVYVGEMERKRFVVPISYL--NHPLFADLLNRAEEEFGFNHPMGGLTIP-CKEDAFIDLTSRL 96 (97)
Q Consensus 36 ~~VyVG~~~~~RfvVp~~~L--~hP~F~~LL~~aeEEfG~~~~~G~L~IP-C~~~~F~~vl~~l 96 (97)
+.+.||+ ++|-+.-..| ..|.|++++.... . ..|.|+ .+.+.|+.++..+
T Consensus 28 v~l~v~~---~~f~aHk~vLaa~S~yF~~mf~~~~-------~-~~i~l~~~~~~~f~~lL~fi 80 (135)
T 2yy9_A 28 ATLDVGG---LVFKAHWSVLACCSHFFQRIYGDGT-------G-GSVVLPAGFAEIFGLLLDFF 80 (135)
T ss_dssp EEEEETT---EEEEECHHHHHHHCHHHHHTCC------------CCEEECGGGHHHHHHHHHHH
T ss_pred eEEEECC---EEEehHHHHHHHhCHHHHHHHcCCC-------C-CeEEeCCCCHHHHHHHHHHH
Confidence 4456665 6787777766 4788998876532 2 578887 5678899888753
No 46
>1zo0_A ODC-AZ, ornithine decarboxylase antizyme; ornithine decarboxylase inhibitor, lyase inhibitor; NMR {Rattus norvegicus} SCOP: d.108.1.7
Probab=21.38 E-value=52 Score=22.48 Aligned_cols=39 Identities=33% Similarity=0.477 Sum_probs=27.6
Q ss_pred CeEEEEeecCcceEEE-Eecccc---CchHHHHHHHHHHHhcCCcc
Q 040932 34 GHIAVYVGEMERKRFV-VPISYL---NHPLFADLLNRAEEEFGFNH 75 (97)
Q Consensus 34 G~~~VyVG~~~~~Rfv-Vp~~~L---~hP~F~~LL~~aeEEfG~~~ 75 (97)
-+-+|..|+ .-|+ ||..-+ +--.|.+||+-|||+.+.++
T Consensus 36 ~W~~Vl~~~---~Lyv~iP~~~~~~gsKe~fv~LLEfAEe~L~~~~ 78 (126)
T 1zo0_A 36 TWRAVWNGG---GLYIELPAGPLPEGSKDSFAALLEFAEEQLRADH 78 (126)
T ss_dssp EEEEEEETT---EEEEECSSCCCSSCCSHHHHHHHHHHHHHHCCCC
T ss_pred eEEEEEeCC---eEEEEcCCccccccchHHHHHHHHHHHHhcCCCE
Confidence 344555554 6666 675543 45679999999999999875
No 47
>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens}
Probab=21.00 E-value=68 Score=20.03 Aligned_cols=54 Identities=17% Similarity=0.345 Sum_probs=37.0
Q ss_pred EEEEeecCcceEEEEecccc--CchHHHHHHHHHHHhcCCccCCCceeee-ccHHHHHHHHhhc
Q 040932 36 IAVYVGEMERKRFVVPISYL--NHPLFADLLNRAEEEFGFNHPMGGLTIP-CKEDAFIDLTSRL 96 (97)
Q Consensus 36 ~~VyVG~~~~~RfvVp~~~L--~hP~F~~LL~~aeEEfG~~~~~G~L~IP-C~~~~F~~vl~~l 96 (97)
+.+.||+ +.|-+.-..| ..|.|++++...-.|- .. +.+.+| .+.+.|+.++..+
T Consensus 28 v~l~v~~---~~~~~Hk~iL~~~S~~F~~~f~~~~~e~---~~-~~i~l~~~~~~~~~~~l~~~ 84 (145)
T 4eoz_A 28 CCLCVAG---QEFQAHKAILAARSPVFSAMFEHEMEES---KK-NRVEINDVEPEVFKEMMCFI 84 (145)
T ss_dssp EEEEETT---EEEEECHHHHHHHCHHHHHHHHSSSHHH---HH-TEEEECSSCHHHHHHHHHHH
T ss_pred eEEEECC---EEEEeehHHHHHcCHHHHHHHcCCCcCC---CC-ceEEecCCCHHHHHHHHHhh
Confidence 4566775 6787776666 4799999997532221 12 468887 6889999888754
No 48
>1o51_A Hypothetical protein TM0021; ferredoxin-like fold, structural genomics, joint center for structural genomics, JCSG; HET: ADP; 2.50A {Thermotoga maritima} SCOP: d.58.5.4
Probab=20.47 E-value=1.3e+02 Score=19.67 Aligned_cols=28 Identities=36% Similarity=0.676 Sum_probs=22.1
Q ss_pred eEEEEeecCcceEEEEeccccCchHHHHHHHHHHHh
Q 040932 35 HIAVYVGEMERKRFVVPISYLNHPLFADLLNRAEEE 70 (97)
Q Consensus 35 ~~~VyVG~~~~~RfvVp~~~L~hP~F~~LL~~aeEE 70 (97)
-+.+|+|+ ..|+- +.|+...|++.+.+.
T Consensus 15 ~Lriy~~E--~~~~~------g~pL~~~Iv~~~~~~ 42 (114)
T 1o51_A 15 LLKIYLGE--KDKHS------GKPLFEYLVKRAYEL 42 (114)
T ss_dssp EEEEEEET--TCEET------TEEHHHHHHHHHHHT
T ss_pred EEEEEECC--ccccC------CeEHHHHHHHHHHHC
Confidence 36899997 55552 789999999999874
No 49
>4dpo_A Conserved protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.73A {Methanosarcina mazei}
Probab=20.14 E-value=1.7e+02 Score=18.34 Aligned_cols=57 Identities=11% Similarity=0.089 Sum_probs=37.8
Q ss_pred cchHHHHHHHHhhhhcccCCCCcCCCCCeEEEEeec--CcceEEEEec---------cccCchHHHHHHHHHHH
Q 040932 7 SMIHNAKQILKRHNNHALKSADQVVPRGHIAVYVGE--MERKRFVVPI---------SYLNHPLFADLLNRAEE 69 (97)
Q Consensus 7 ~~~~~~k~~l~r~~s~~~~~~~~~vpkG~~~VyVG~--~~~~RfvVp~---------~~L~hP~F~~LL~~aeE 69 (97)
+....+.+.++.....+ ....||+...+.. ++..+|++=. .+++.|.|+++++..++
T Consensus 37 g~~~~f~~~l~~~~~~~------r~EpGcl~y~l~~~~~dp~~f~~~E~W~d~ea~~aH~~s~~f~~~~~~~~~ 104 (119)
T 4dpo_A 37 EKVQEFMNLCKSLIEET------LKEEGCIDYGVYQELENPEILTMLEEWKDEGSLDQHIRSDHFKEIFPLLSE 104 (119)
T ss_dssp TTHHHHHHHHHHHHHHH------HTSTTEEEEEEEEETTEEEEEEEEEEESSHHHHHHHHTSHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHH------hcCCCcEEEEEEEcCCCCCEEEEEEEECCHHHHHHHHcCHHHHHHHHHHHH
Confidence 34445555555544332 3467998887764 4578888854 46788999999988865
No 50
>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus}
Probab=20.02 E-value=64 Score=20.53 Aligned_cols=52 Identities=21% Similarity=0.233 Sum_probs=35.6
Q ss_pred EEEEeecCcceEEEEecccc--CchHHHHHHHHHHHhcCCccCCCceeee--ccHHHHHHHHhhc
Q 040932 36 IAVYVGEMERKRFVVPISYL--NHPLFADLLNRAEEEFGFNHPMGGLTIP--CKEDAFIDLTSRL 96 (97)
Q Consensus 36 ~~VyVG~~~~~RfvVp~~~L--~hP~F~~LL~~aeEEfG~~~~~G~L~IP--C~~~~F~~vl~~l 96 (97)
+.+.||+ ++|-+.-..| ..|.|++++...- ... ..+.|| -+.+.|+.++..+
T Consensus 39 v~l~v~~---~~f~aHk~vLaa~S~yF~~~f~~~~-----~e~-~~i~l~~~v~~~~~~~lL~~~ 94 (138)
T 2z8h_A 39 VTVLVEG---QRFRAHRSVLAACSSYFHSRIVGQT-----DAE-LTVTLPEEVTVKGFEPLIQFA 94 (138)
T ss_dssp EEEEETT---EEEEECHHHHHHHCHHHHHHHTTCC-----CTT-EEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEECC---EEEechHHHHHHcCHHHHHHHhcCC-----CCC-ceEEeCCCCCHHHHHHHHHHh
Confidence 4456675 7788877777 5799999986432 212 467775 6788888887643
No 51
>1wj6_A KIAA0049 protein, RSGI RUH-024; PB1 domain, protein binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=20.01 E-value=1.7e+02 Score=19.28 Aligned_cols=50 Identities=14% Similarity=0.220 Sum_probs=36.0
Q ss_pred EEeecCcceEEEEeccccCchHHHHHHHHHHHhcCC--------ccCCCceeeeccHHHHHH
Q 040932 38 VYVGEMERKRFVVPISYLNHPLFADLLNRAEEEFGF--------NHPMGGLTIPCKEDAFID 91 (97)
Q Consensus 38 VyVG~~~~~RfvVp~~~L~hP~F~~LL~~aeEEfG~--------~~~~G~L~IPC~~~~F~~ 91 (97)
-|-| +.+||. ++++..+.+.+|-.+-..-||+ |.++-.++|.=+.+..|-
T Consensus 20 ~f~g--e~~rF~--Vs~~~~~tweel~~mvk~~f~L~~~~IkY~DEenD~V~i~Sq~E~eEA 77 (101)
T 1wj6_A 20 TFKN--EIQSFL--VSDPENTTWADIEAMVKVSFDLNTIQIKYLDEENEEVSINSQGEYEEA 77 (101)
T ss_dssp EETT--EEEEEE--ESCTTTSCHHHHHHHHHHHHCCSSBCCEEECTTSCEECCCSHHHHHHH
T ss_pred EEcC--CeeEEE--ecCCCCCCHHHHHHHHHHHcCCCceEEEEecCCCCEEEEecHHHHHHH
Confidence 3446 478875 5789999999999999999995 344456777766544443
Done!