Query 040933
Match_columns 298
No_of_seqs 228 out of 2699
Neff 9.7
Searched_HMMs 46136
Date Fri Mar 29 13:15:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040933.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040933hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 8.3E-49 1.8E-53 377.2 17.0 279 7-295 337-635 (889)
2 PLN03210 Resistant to P. syrin 100.0 3.2E-31 7E-36 266.6 23.0 136 4-158 367-505 (1153)
3 PF00931 NB-ARC: NB-ARC domain 99.7 1.5E-17 3.2E-22 144.2 2.6 104 7-112 177-284 (287)
4 KOG0617 Ras suppressor protein 99.3 6.9E-14 1.5E-18 107.8 -2.3 115 177-297 51-191 (264)
5 KOG0617 Ras suppressor protein 99.1 1.6E-12 3.4E-17 100.4 -4.4 119 174-298 25-169 (264)
6 KOG0472 Leucine-rich repeat pr 99.0 2.3E-11 5.1E-16 105.3 -4.1 109 179-294 203-312 (565)
7 PLN00113 leucine-rich repeat r 98.9 2.6E-09 5.6E-14 107.6 8.4 112 181-296 139-254 (968)
8 PLN00113 leucine-rich repeat r 98.9 3.2E-09 6.9E-14 106.9 7.6 113 180-296 162-278 (968)
9 PF14580 LRR_9: Leucine-rich r 98.9 2E-09 4.3E-14 85.5 4.4 103 183-292 20-126 (175)
10 KOG0444 Cytoskeletal regulator 98.9 5.2E-10 1.1E-14 102.2 0.8 115 178-297 99-217 (1255)
11 PF14580 LRR_9: Leucine-rich r 98.8 2.8E-09 6E-14 84.7 3.6 101 181-287 41-148 (175)
12 PF13855 LRR_8: Leucine rich r 98.8 3.9E-09 8.5E-14 69.0 3.2 58 234-291 1-61 (61)
13 PLN03210 Resistant to P. syrin 98.8 2.8E-08 6.2E-13 101.3 9.6 106 183-296 590-699 (1153)
14 PRK15370 E3 ubiquitin-protein 98.7 2.6E-07 5.7E-12 89.3 14.2 103 180-296 197-300 (754)
15 KOG0472 Leucine-rich repeat pr 98.7 5.8E-10 1.3E-14 96.8 -3.8 111 180-297 181-293 (565)
16 PF13855 LRR_8: Leucine rich r 98.7 1.7E-08 3.6E-13 66.0 2.9 60 206-269 1-61 (61)
17 KOG4658 Apoptotic ATPase [Sign 98.7 1.5E-08 3.2E-13 99.4 3.6 105 182-290 545-653 (889)
18 KOG0444 Cytoskeletal regulator 98.6 1.5E-09 3.2E-14 99.3 -3.2 116 180-297 220-357 (1255)
19 PLN03150 hypothetical protein; 98.6 6.5E-08 1.4E-12 92.5 6.9 102 184-289 420-525 (623)
20 PLN03150 hypothetical protein; 98.6 1.5E-07 3.2E-12 90.0 8.4 87 207-297 419-509 (623)
21 KOG4194 Membrane glycoprotein 98.6 1.6E-08 3.4E-13 91.9 1.1 115 183-297 198-335 (873)
22 KOG1259 Nischarin, modulator o 98.6 1.2E-08 2.7E-13 85.6 0.1 108 181-296 283-416 (490)
23 KOG4194 Membrane glycoprotein 98.5 2.6E-07 5.7E-12 84.2 5.7 107 182-292 125-234 (873)
24 KOG0618 Serine/threonine phosp 98.4 1.3E-08 2.8E-13 96.7 -2.9 85 203-292 380-465 (1081)
25 PRK15387 E3 ubiquitin-protein 98.4 3.4E-06 7.4E-11 81.6 12.6 60 234-296 282-359 (788)
26 KOG0618 Serine/threonine phosp 98.4 4.9E-08 1.1E-12 92.9 0.0 110 174-290 375-487 (1081)
27 PRK15370 E3 ubiquitin-protein 98.4 1.1E-06 2.3E-11 85.2 9.0 102 182-297 178-280 (754)
28 KOG1259 Nischarin, modulator o 98.4 3.8E-08 8.2E-13 82.8 -0.9 84 205-294 283-389 (490)
29 PF12799 LRR_4: Leucine Rich r 98.4 2.8E-07 6E-12 55.6 2.8 37 235-271 2-38 (44)
30 PF12799 LRR_4: Leucine Rich r 98.4 4.4E-07 9.5E-12 54.8 3.3 40 257-296 1-41 (44)
31 PRK15387 E3 ubiquitin-protein 98.3 2.8E-06 6E-11 82.2 8.3 60 233-295 301-378 (788)
32 KOG0532 Leucine-rich repeat (L 98.2 4.3E-07 9.3E-12 82.5 0.2 110 181-297 142-252 (722)
33 KOG0532 Leucine-rich repeat (L 98.1 2.3E-07 5E-12 84.2 -3.2 111 179-297 118-229 (722)
34 KOG4237 Extracellular matrix p 98.1 3E-07 6.4E-12 80.1 -2.6 114 179-296 64-181 (498)
35 COG4886 Leucine-rich repeat (L 97.9 4.6E-06 1E-10 75.6 2.4 104 182-292 116-222 (394)
36 KOG4579 Leucine-rich repeat (L 97.9 1.1E-06 2.4E-11 65.8 -1.4 85 182-271 53-137 (177)
37 COG4886 Leucine-rich repeat (L 97.9 4.4E-06 9.5E-11 75.8 2.1 104 183-292 141-245 (394)
38 KOG3665 ZYG-1-like serine/thre 97.9 3.5E-06 7.6E-11 80.9 0.8 83 203-289 145-230 (699)
39 KOG3207 Beta-tubulin folding c 97.7 1.4E-05 3E-10 70.7 2.1 112 180-295 195-317 (505)
40 PRK15386 type III secretion pr 97.7 8.2E-05 1.8E-09 66.6 6.9 59 182-250 52-111 (426)
41 KOG0531 Protein phosphatase 1, 97.6 1.7E-05 3.6E-10 72.5 1.1 105 181-293 94-200 (414)
42 cd00116 LRR_RI Leucine-rich re 97.6 3.2E-05 6.9E-10 67.8 2.8 106 182-292 137-263 (319)
43 KOG1644 U2-associated snRNP A' 97.6 9.7E-05 2.1E-09 59.1 5.2 102 182-289 42-150 (233)
44 cd00116 LRR_RI Leucine-rich re 97.6 1.9E-05 4.2E-10 69.2 1.0 106 183-293 109-235 (319)
45 KOG4579 Leucine-rich repeat (L 97.6 7.7E-06 1.7E-10 61.4 -1.3 86 206-295 53-139 (177)
46 KOG4237 Extracellular matrix p 97.5 3.1E-06 6.7E-11 73.9 -4.6 108 180-290 89-199 (498)
47 KOG0531 Protein phosphatase 1, 97.3 8.9E-05 1.9E-09 67.7 1.2 87 203-295 92-178 (414)
48 PRK15386 type III secretion pr 97.2 0.0025 5.4E-08 57.3 9.5 96 179-289 69-187 (426)
49 KOG1859 Leucine-rich repeat pr 97.1 1.1E-05 2.5E-10 75.5 -6.6 103 182-292 187-292 (1096)
50 KOG3207 Beta-tubulin folding c 97.0 0.00022 4.8E-09 63.3 0.7 111 181-294 171-286 (505)
51 KOG3665 ZYG-1-like serine/thre 96.9 0.00088 1.9E-08 64.7 4.0 106 180-291 146-262 (699)
52 KOG1909 Ran GTPase-activating 96.9 0.00037 8E-09 60.2 1.1 90 182-271 157-255 (382)
53 KOG1859 Leucine-rich repeat pr 96.8 4.2E-05 9E-10 71.9 -5.7 105 180-292 162-267 (1096)
54 PF00560 LRR_1: Leucine Rich R 96.7 0.00045 9.7E-09 34.8 0.3 21 235-255 1-21 (22)
55 KOG1644 U2-associated snRNP A' 96.7 0.0031 6.8E-08 50.7 4.9 83 205-293 41-127 (233)
56 PF13504 LRR_7: Leucine rich r 96.6 0.0013 2.8E-08 30.8 1.3 17 279-295 1-17 (17)
57 KOG2739 Leucine-rich acidic nu 96.4 0.0021 4.6E-08 53.5 2.4 103 180-289 41-153 (260)
58 KOG2739 Leucine-rich acidic nu 96.3 0.0024 5.2E-08 53.2 2.3 85 203-293 40-130 (260)
59 PF00560 LRR_1: Leucine Rich R 96.2 0.0016 3.5E-08 32.7 0.4 20 258-277 1-21 (22)
60 PF13504 LRR_7: Leucine rich r 95.5 0.009 1.9E-07 27.9 1.3 16 235-250 2-17 (17)
61 smart00369 LRR_TYP Leucine-ric 95.4 0.01 2.2E-07 31.0 1.5 20 278-297 1-20 (26)
62 smart00370 LRR Leucine-rich re 95.4 0.01 2.2E-07 31.0 1.5 20 278-297 1-20 (26)
63 KOG2982 Uncharacterized conser 95.3 0.006 1.3E-07 52.0 0.6 87 203-293 68-160 (418)
64 PF13306 LRR_5: Leucine rich r 95.1 0.078 1.7E-06 39.5 6.2 103 183-295 13-118 (129)
65 KOG1909 Ran GTPase-activating 94.8 0.018 3.8E-07 50.1 2.1 90 203-292 154-254 (382)
66 PF13306 LRR_5: Leucine rich r 94.7 0.052 1.1E-06 40.5 4.4 86 197-289 3-91 (129)
67 KOG2123 Uncharacterized conser 94.6 0.0013 2.8E-08 55.5 -5.1 96 182-285 19-123 (388)
68 KOG2123 Uncharacterized conser 94.5 0.0019 4.1E-08 54.5 -4.3 79 205-290 18-99 (388)
69 KOG2120 SCF ubiquitin ligase, 94.4 0.0099 2.2E-07 50.8 -0.3 59 231-289 310-373 (419)
70 KOG0473 Leucine-rich repeat pr 93.8 0.0017 3.6E-08 53.4 -5.8 83 203-290 39-122 (326)
71 KOG2120 SCF ubiquitin ligase, 93.7 0.0098 2.1E-07 50.8 -1.7 105 183-290 211-349 (419)
72 smart00370 LRR Leucine-rich re 92.5 0.11 2.3E-06 27.0 1.8 19 234-252 2-20 (26)
73 smart00369 LRR_TYP Leucine-ric 92.5 0.11 2.3E-06 27.0 1.8 19 234-252 2-20 (26)
74 smart00364 LRR_BAC Leucine-ric 90.9 0.16 3.4E-06 26.5 1.3 18 279-296 2-19 (26)
75 KOG2982 Uncharacterized conser 90.8 0.12 2.7E-06 44.3 1.4 61 231-291 68-133 (418)
76 KOG3864 Uncharacterized conser 90.2 0.043 9.3E-07 44.3 -1.7 59 230-288 121-185 (221)
77 KOG0473 Leucine-rich repeat pr 88.7 0.012 2.7E-07 48.4 -5.8 85 181-271 41-125 (326)
78 PRK04841 transcriptional regul 86.7 3.8 8.2E-05 41.5 9.0 119 13-155 206-332 (903)
79 smart00365 LRR_SD22 Leucine-ri 84.5 0.77 1.7E-05 24.0 1.5 17 278-294 1-17 (26)
80 PF13516 LRR_6: Leucine Rich r 76.9 1.4 3.1E-05 22.1 1.0 13 279-291 2-14 (24)
81 KOG3864 Uncharacterized conser 73.7 0.87 1.9E-05 36.9 -0.5 57 237-293 104-166 (221)
82 KOG1947 Leucine rich repeat pr 72.4 1.9 4.2E-05 39.7 1.4 85 203-289 211-305 (482)
83 COG5238 RNA1 Ran GTPase-activa 68.1 3.8 8.2E-05 35.1 2.0 41 231-271 211-256 (388)
84 COG5238 RNA1 Ran GTPase-activa 65.2 10 0.00022 32.5 4.1 107 182-292 92-227 (388)
85 smart00368 LRR_RI Leucine rich 64.8 5.6 0.00012 20.9 1.7 13 279-291 2-14 (28)
86 smart00367 LRR_CC Leucine-rich 63.9 5.8 0.00013 20.3 1.6 12 257-268 2-13 (26)
87 KOG4341 F-box protein containi 44.0 9 0.00019 34.8 0.4 59 231-289 369-436 (483)
88 PF14050 Nudc_N: N-terminal co 41.0 58 0.0012 21.0 3.7 30 10-39 2-31 (62)
89 KOG1947 Leucine rich repeat pr 40.1 11 0.00023 34.8 0.3 63 203-268 240-306 (482)
90 KOG4341 F-box protein containi 32.4 32 0.0007 31.4 2.0 85 203-290 317-412 (483)
91 KOG3763 mRNA export factor TAP 28.6 29 0.00063 32.7 1.2 78 203-285 215-307 (585)
92 PF09675 Chlamy_scaf: Chlamydi 26.9 1.4E+02 0.0029 21.7 4.0 56 16-88 2-60 (114)
93 PF12221 HflK_N: Bacterial mem 22.5 1.1E+02 0.0024 18.0 2.4 21 5-25 17-37 (42)
94 TIGR00635 ruvB Holliday juncti 22.4 5E+02 0.011 22.2 8.4 22 13-34 182-203 (305)
95 cd04440 DEP_2_P-Rex DEP (Dishe 20.4 2.2E+02 0.0048 20.0 4.1 36 97-139 40-75 (93)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=8.3e-49 Score=377.22 Aligned_cols=279 Identities=27% Similarity=0.439 Sum_probs=245.0
Q ss_pred CCcchHHHHHHHHHHcCCchhHHHHHHHHhcCC-CHHHHHHHHHHhcCCCCCCCCCchhhhhhHHhhhhcCCCCchhHHH
Q 040933 7 EGSELKCVARDVAKECVGLPVSIVAVARALRSA-SIFKWKDALKQLRRPSSTNFKHIQPEAYKATALSYDKLEGEELKNL 85 (298)
Q Consensus 7 ~~~~l~~i~~~i~~~c~GlPLal~~~g~~L~~k-~~~~W~~~~~~l~~~~~~~~~~~~~~~~~~l~~sY~~L~~~~lk~c 85 (298)
.++.++++|++||++|+|+|||++++|+.|+.| +.++|+++.+.+.+....+.++..+.++.+|++|||+||++ +|.|
T Consensus 337 ~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~~~~i~~iLklSyd~L~~~-lK~C 415 (889)
T KOG4658|consen 337 SHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGMEESILPILKLSYDNLPEE-LKSC 415 (889)
T ss_pred ccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCchhhhhHHhhhccHhhhhHH-HHHH
Confidence 334599999999999999999999999999988 88899999999988866666667889999999999999977 9999
Q ss_pred HHHhcC-C--CCCCHHHHHHHHhhcCCCCCcccHHHHHHHHHHHHHHHHhcCCcccCC-------ccchHHHHHHHHHHH
Q 040933 86 FLLIGY-A--YVESIDELLRYGVGLGLFQGISKLDEARDRVSTLVYKLKASCMLLDEG-------LPMHDVIRDVAISIV 155 (298)
Q Consensus 86 fl~~a~-p--~~~~~~~li~~wia~g~i~~~~~~~~~~~~~~~~i~~L~~~~l~~~~~-------~~mhdlv~~l~~~~~ 155 (298)
|+|||. | |.|++++||..|+||||+.+....+.+++.|.+++.+|+.++|++..+ |+|||+||++|.+++
T Consensus 416 FLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~~~~~~~kmHDvvRe~al~ia 495 (889)
T KOG4658|consen 416 FLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERDEGRKETVKMHDVVREMALWIA 495 (889)
T ss_pred HHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhcccccceeEEEeeHHHHHHHHHHh
Confidence 999999 8 999999999999999999887777888999999999999999998642 999999999999999
Q ss_pred h-----hcCceEEecCCccccCCCCCchhhccCccEEEEeCCCCccCCCCcCCCCCCCcEEecccccccc-cccccChHH
Q 040933 156 S-----AEKNVFTATGELFDGCMEWSDENAVKLYTSIVLRDIKTNVLPDRVLPECPQLKLFSVRADHQES-SSLTIPNNF 229 (298)
Q Consensus 156 ~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~-~~~~lp~~~ 229 (298)
+ .++. +...+.+.. ..+....+..+|++++.+|.+..++.. ..+++|++|.+.+ +. ....++..+
T Consensus 496 s~~~~~~e~~-iv~~~~~~~---~~~~~~~~~~~rr~s~~~~~~~~~~~~--~~~~~L~tLll~~---n~~~l~~is~~f 566 (889)
T KOG4658|consen 496 SDFGKQEENQ-IVSDGVGLS---EIPQVKSWNSVRRMSLMNNKIEHIAGS--SENPKLRTLLLQR---NSDWLLEISGEF 566 (889)
T ss_pred ccccccccce-EEECCcCcc---ccccccchhheeEEEEeccchhhccCC--CCCCccceEEEee---cchhhhhcCHHH
Confidence 9 5652 222222222 345666778999999999999999988 8888999999998 33 378889999
Q ss_pred HhCCCCccEEEecCC-CCCCCCccccCCCCCcEeecCCCCCCC-CcccCCCCCCCEEeecCC-CCCCCC
Q 040933 230 FEKMIQVRVINLTYM-NLLPLPSSLGLLSNLRTLSLCYCKLLD-ISVTGELKKLEILCLRGS-DIQQLP 295 (298)
Q Consensus 230 ~~~l~~Lr~L~l~~~-~i~~lP~~i~~L~~L~~L~l~~~~l~~-p~~i~~L~~L~~L~l~~~-~l~~lP 295 (298)
|..++.||||||++| .+.++|.+|+.|.|||||+++++.++. |.++++|.+|++|++..+ ++..+|
T Consensus 567 f~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~ 635 (889)
T KOG4658|consen 567 FRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIP 635 (889)
T ss_pred HhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheecccccccccccc
Confidence 999999999999988 789999999999999999999999999 999999999999999988 444443
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.98 E-value=3.2e-31 Score=266.60 Aligned_cols=136 Identities=20% Similarity=0.270 Sum_probs=111.5
Q ss_pred CCCCCcchHHHHHHHHHHcCCchhHHHHHHHHhcCCCHHHHHHHHHHhcCCCCCCCCCchhhhhhHHhhhhcCCCCchhH
Q 040933 4 DYVEGSELKCVARDVAKECVGLPVSIVAVARALRSASIFKWKDALKQLRRPSSTNFKHIQPEAYKATALSYDKLEGEELK 83 (298)
Q Consensus 4 ~~~~~~~l~~i~~~i~~~c~GlPLal~~~g~~L~~k~~~~W~~~~~~l~~~~~~~~~~~~~~~~~~l~~sY~~L~~~~lk 83 (298)
+..+++++++++++||++|+|+||||+++|+.|++++..+|+.++++++... ..+++++|++||++|++++.|
T Consensus 367 ~~~~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k~~~~W~~~l~~L~~~~-------~~~I~~~L~~SYd~L~~~~~k 439 (1153)
T PLN03210 367 KNSPPDGFMELASEVALRAGNLPLGLNVLGSYLRGRDKEDWMDMLPRLRNGL-------DGKIEKTLRVSYDGLNNKKDK 439 (1153)
T ss_pred CCCCcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHhCc-------cHHHHHHHHHhhhccCccchh
Confidence 4456678999999999999999999999999999999999999999987644 346799999999999864369
Q ss_pred HHHHHhcC-CCCCCHHHHHHHHhhcCCCCCcccHHHHHHHHHHHHHHHHhcCCcccCC--ccchHHHHHHHHHHHhhc
Q 040933 84 NLFLLIGY-AYVESIDELLRYGVGLGLFQGISKLDEARDRVSTLVYKLKASCMLLDEG--LPMHDVIRDVAISIVSAE 158 (298)
Q Consensus 84 ~cfl~~a~-p~~~~~~~li~~wia~g~i~~~~~~~~~~~~~~~~i~~L~~~~l~~~~~--~~mhdlv~~l~~~~~~~~ 158 (298)
.||+|+|+ |.+.+.+. +..|.+.+.... ...++.|+++||++... ++|||++|+||+.+++++
T Consensus 440 ~~Fl~ia~ff~~~~~~~-v~~~l~~~~~~~-----------~~~l~~L~~ksLi~~~~~~~~MHdLl~~~~r~i~~~~ 505 (1153)
T PLN03210 440 AIFRHIACLFNGEKVND-IKLLLANSDLDV-----------NIGLKNLVDKSLIHVREDIVEMHSLLQEMGKEIVRAQ 505 (1153)
T ss_pred hhhheehhhcCCCCHHH-HHHHHHhcCCCc-----------hhChHHHHhcCCEEEcCCeEEhhhHHHHHHHHHHHhh
Confidence 99999999 76666655 555656554321 11277899999998764 999999999999998765
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=99.67 E-value=1.5e-17 Score=144.23 Aligned_cols=104 Identities=27% Similarity=0.509 Sum_probs=86.1
Q ss_pred CCcchHHHHHHHHHHcCCchhHHHHHHHHhcCC-CHHHHHHHHHHhcCCCCCCCCCchhhhhhHHhhhhcCCCCchhHHH
Q 040933 7 EGSELKCVARDVAKECVGLPVSIVAVARALRSA-SIFKWKDALKQLRRPSSTNFKHIQPEAYKATALSYDKLEGEELKNL 85 (298)
Q Consensus 7 ~~~~l~~i~~~i~~~c~GlPLal~~~g~~L~~k-~~~~W~~~~~~l~~~~~~~~~~~~~~~~~~l~~sY~~L~~~~lk~c 85 (298)
.++.+++++++|+++|+|+|||++++|++|+.+ +..+|+.+++.+...... .......+..++..||+.||++ +|+|
T Consensus 177 ~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~-~~~~~~~~~~~l~~s~~~L~~~-~~~~ 254 (287)
T PF00931_consen 177 SPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRE-SRDYDRSVFSALELSYDSLPDE-LRRC 254 (287)
T ss_dssp --TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTC-SSGSCHHHHHHHHHHHHSSHTC-CHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccceechhcCCcc-HHHH
Confidence 456678899999999999999999999999755 889999999887766542 2123678999999999999998 8999
Q ss_pred HHHhcC-C--CCCCHHHHHHHHhhcCCCCC
Q 040933 86 FLLIGY-A--YVESIDELLRYGVGLGLFQG 112 (298)
Q Consensus 86 fl~~a~-p--~~~~~~~li~~wia~g~i~~ 112 (298)
|+|||+ | +.++++.++++|+++||+..
T Consensus 255 f~~L~~f~~~~~i~~~~li~lW~~e~~i~~ 284 (287)
T PF00931_consen 255 FLYLSIFPEGVPIPRERLIRLWVAEGFISS 284 (287)
T ss_dssp HHHGGGSGTTS-EEHHHHHHHHTT-HHTC-
T ss_pred HhhCcCCCCCceECHHHHHHHHHHCCCCcc
Confidence 999999 7 78999999999999999964
No 4
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.33 E-value=6.9e-14 Score=107.77 Aligned_cols=115 Identities=29% Similarity=0.470 Sum_probs=70.4
Q ss_pred chhhccCccEEEEeCCCCccCCCCcCCCCCCCcEEecccccccccccccChHHHhCCCCccEEEecCCC-----------
Q 040933 177 DENAVKLYTSIVLRDIKTNVLPDRVLPECPQLKLFSVRADHQESSSLTIPNNFFEKMIQVRVINLTYMN----------- 245 (298)
Q Consensus 177 ~~~~~~~~~~l~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~l~~~~----------- 245 (298)
......+++.+.+.+|+++++|.++ +.+++|+.|.+.. +.+..+|.++ ++++.|.+||+.+|+
T Consensus 51 nia~l~nlevln~~nnqie~lp~~i-ssl~klr~lnvgm----nrl~~lprgf-gs~p~levldltynnl~e~~lpgnff 124 (264)
T KOG0617|consen 51 NIAELKNLEVLNLSNNQIEELPTSI-SSLPKLRILNVGM----NRLNILPRGF-GSFPALEVLDLTYNNLNENSLPGNFF 124 (264)
T ss_pred cHHHhhhhhhhhcccchhhhcChhh-hhchhhhheecch----hhhhcCcccc-CCCchhhhhhccccccccccCCcchh
Confidence 3344556666666666666666653 5666666666654 4555556554 666666666666654
Q ss_pred --------------CCCCCccccCCCCCcEeecCCCCCCC-CcccCCCCCCCEEeecCCCCCCCCCC
Q 040933 246 --------------LLPLPSSLGLLSNLRTLSLCYCKLLD-ISVTGELKKLEILCLRGSDIQQLPVE 297 (298)
Q Consensus 246 --------------i~~lP~~i~~L~~L~~L~l~~~~l~~-p~~i~~L~~L~~L~l~~~~l~~lP~~ 297 (298)
++-+|+.+|+|++|+.|.+++|.+-+ |..+|.|..|+.|.+.+|++.-+|++
T Consensus 125 ~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelhiqgnrl~vlppe 191 (264)
T KOG0617|consen 125 YMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQGNRLTVLPPE 191 (264)
T ss_pred HHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhcccceeeecChh
Confidence 44456666666666666666666444 66666666666666666666666653
No 5
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.12 E-value=1.6e-12 Score=100.36 Aligned_cols=119 Identities=26% Similarity=0.434 Sum_probs=103.0
Q ss_pred CCCchhhccCccEEEEeCCCCccCCCCcCCCCCCCcEEecccccccccccccChHHHhCCCCccEEEecCCCCCCCCccc
Q 040933 174 EWSDENAVKLYTSIVLRDIKTNVLPDRVLPECPQLKLFSVRADHQESSSLTIPNNFFEKMIQVRVINLTYMNLLPLPSSL 253 (298)
Q Consensus 174 ~~~~~~~~~~~~~l~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~l~~~~i~~lP~~i 253 (298)
..+..-....++++-+++|++..+|+.+ .++.+|.+|.+.. +.+..+|.++ ++++.||.|++.-|++..+|..+
T Consensus 25 ~~~gLf~~s~ITrLtLSHNKl~~vppni-a~l~nlevln~~n----nqie~lp~~i-ssl~klr~lnvgmnrl~~lprgf 98 (264)
T KOG0617|consen 25 ELPGLFNMSNITRLTLSHNKLTVVPPNI-AELKNLEVLNLSN----NQIEELPTSI-SSLPKLRILNVGMNRLNILPRGF 98 (264)
T ss_pred hcccccchhhhhhhhcccCceeecCCcH-HHhhhhhhhhccc----chhhhcChhh-hhchhhhheecchhhhhcCcccc
Confidence 4455556678999999999999999885 8899999999986 8899999998 99999999999999999999999
Q ss_pred cCCCCCcEeecCCCCCCC---C-----------------------cccCCCCCCCEEeecCCCCCCCCCCC
Q 040933 254 GLLSNLRTLSLCYCKLLD---I-----------------------SVTGELKKLEILCLRGSDIQQLPVEL 298 (298)
Q Consensus 254 ~~L~~L~~L~l~~~~l~~---p-----------------------~~i~~L~~L~~L~l~~~~l~~lP~~i 298 (298)
|.++.|+.|++++|++.+ | +.+++|++||.|.++.|.+-++|.+|
T Consensus 99 gs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll~lpkei 169 (264)
T KOG0617|consen 99 GSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLSLPKEI 169 (264)
T ss_pred CCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchhhCcHHH
Confidence 999999999998877554 3 47788899999999999888888653
No 6
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=98.96 E-value=2.3e-11 Score=105.32 Aligned_cols=109 Identities=24% Similarity=0.404 Sum_probs=96.5
Q ss_pred hhccCccEEEEeCCCCccCCCCcCCCCCCCcEEecccccccccccccChHHHhCCCCccEEEecCCCCCCCCccccCCCC
Q 040933 179 NAVKLYTSIVLRDIKTNVLPDRVLPECPQLKLFSVRADHQESSSLTIPNNFFEKMIQVRVINLTYMNLLPLPSSLGLLSN 258 (298)
Q Consensus 179 ~~~~~~~~l~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~l~~~~i~~lP~~i~~L~~ 258 (298)
...+++..++++.|++..+|+. .+++.|..|++.. +.+..+|.+....+.+|.+||+..|+++++|..++.|.+
T Consensus 203 g~l~~L~~LyL~~Nki~~lPef--~gcs~L~Elh~g~----N~i~~lpae~~~~L~~l~vLDLRdNklke~Pde~clLrs 276 (565)
T KOG0472|consen 203 GGLESLELLYLRRNKIRFLPEF--PGCSLLKELHVGE----NQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRS 276 (565)
T ss_pred cchhhhHHHHhhhcccccCCCC--CccHHHHHHHhcc----cHHHhhHHHHhcccccceeeeccccccccCchHHHHhhh
Confidence 3456677788888888888864 8888888888765 788899999988999999999999999999999999999
Q ss_pred CcEeecCCCCCCC-CcccCCCCCCCEEeecCCCCCCC
Q 040933 259 LRTLSLCYCKLLD-ISVTGELKKLEILCLRGSDIQQL 294 (298)
Q Consensus 259 L~~L~l~~~~l~~-p~~i~~L~~L~~L~l~~~~l~~l 294 (298)
|.+||+++|.++. |.++|+| +|+.|-+.||.++.+
T Consensus 277 L~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNPlrTi 312 (565)
T KOG0472|consen 277 LERLDLSNNDISSLPYSLGNL-HLKFLALEGNPLRTI 312 (565)
T ss_pred hhhhcccCCccccCCcccccc-eeeehhhcCCchHHH
Confidence 9999999999999 9999999 999999999987654
No 7
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=98.92 E-value=2.6e-09 Score=107.60 Aligned_cols=112 Identities=19% Similarity=0.260 Sum_probs=69.1
Q ss_pred ccCccEEEEeCCCCccCCCCcCCCCCCCcEEecccccccccccccChHHHhCCCCccEEEecCCCCCC-CCccccCCCCC
Q 040933 181 VKLYTSIVLRDIKTNVLPDRVLPECPQLKLFSVRADHQESSSLTIPNNFFEKMIQVRVINLTYMNLLP-LPSSLGLLSNL 259 (298)
Q Consensus 181 ~~~~~~l~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~l~~~~i~~-lP~~i~~L~~L 259 (298)
...++.|.+.+|.+....+..+..+++|++|.+.+ +.....+|..+ .++++|++|++++|.+.. +|..++++.+|
T Consensus 139 l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~---n~l~~~~p~~~-~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L 214 (968)
T PLN00113 139 IPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGG---NVLVGKIPNSL-TNLTSLEFLTLASNQLVGQIPRELGQMKSL 214 (968)
T ss_pred cCCCCEEECcCCcccccCChHHhcCCCCCEEECcc---CcccccCChhh-hhCcCCCeeeccCCCCcCcCChHHcCcCCc
Confidence 34566666666655432222235666677777666 33334555544 667777777777776654 56677777777
Q ss_pred cEeecCCCCCCC--CcccCCCCCCCEEeecCCCCC-CCCC
Q 040933 260 RTLSLCYCKLLD--ISVTGELKKLEILCLRGSDIQ-QLPV 296 (298)
Q Consensus 260 ~~L~l~~~~l~~--p~~i~~L~~L~~L~l~~~~l~-~lP~ 296 (298)
++|++++|.+.. |..++++++|++|++++|++. .+|.
T Consensus 215 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~ 254 (968)
T PLN00113 215 KWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPS 254 (968)
T ss_pred cEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccCh
Confidence 777777777554 666777777777777777554 4443
No 8
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=98.89 E-value=3.2e-09 Score=106.93 Aligned_cols=113 Identities=24% Similarity=0.316 Sum_probs=76.6
Q ss_pred hccCccEEEEeCCCCccCCCCcCCCCCCCcEEecccccccccccccChHHHhCCCCccEEEecCCCCCC-CCccccCCCC
Q 040933 180 AVKLYTSIVLRDIKTNVLPDRVLPECPQLKLFSVRADHQESSSLTIPNNFFEKMIQVRVINLTYMNLLP-LPSSLGLLSN 258 (298)
Q Consensus 180 ~~~~~~~l~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~l~~~~i~~-lP~~i~~L~~ 258 (298)
...+++.|.+.+|.+....+..+..+++|++|.+.+ +.....+|..+ ..+++|++|++++|.+.. +|..++.+++
T Consensus 162 ~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~---n~l~~~~p~~l-~~l~~L~~L~L~~n~l~~~~p~~l~~l~~ 237 (968)
T PLN00113 162 SFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLAS---NQLVGQIPREL-GQMKSLKWIYLGYNNLSGEIPYEIGGLTS 237 (968)
T ss_pred cCCCCCEEECccCcccccCChhhhhCcCCCeeeccC---CCCcCcCChHH-cCcCCccEEECcCCccCCcCChhHhcCCC
Confidence 345677777777776533322346677777777776 44444556554 777777777777777664 6777777777
Q ss_pred CcEeecCCCCCCC--CcccCCCCCCCEEeecCCCCC-CCCC
Q 040933 259 LRTLSLCYCKLLD--ISVTGELKKLEILCLRGSDIQ-QLPV 296 (298)
Q Consensus 259 L~~L~l~~~~l~~--p~~i~~L~~L~~L~l~~~~l~-~lP~ 296 (298)
|++|++++|.+.. |..++++++|++|++++|++. .+|.
T Consensus 238 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~ 278 (968)
T PLN00113 238 LNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPP 278 (968)
T ss_pred CCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCch
Confidence 7777777777654 777777777777777777654 4453
No 9
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.87 E-value=2e-09 Score=85.49 Aligned_cols=103 Identities=17% Similarity=0.292 Sum_probs=26.7
Q ss_pred CccEEEEeCCCCccCCCCcCCCCCCCcEEecccccccccccccChHHHhCCCCccEEEecCCCCCCCCccc-cCCCCCcE
Q 040933 183 LYTSIVLRDIKTNVLPDRVLPECPQLKLFSVRADHQESSSLTIPNNFFEKMIQVRVINLTYMNLLPLPSSL-GLLSNLRT 261 (298)
Q Consensus 183 ~~~~l~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~l~~~~i~~lP~~i-~~L~~L~~ 261 (298)
+.+.|++.+|.++.+... -..+.+|+.|++++ +.+..+.. +..++.|+.|++++|.|+.+++.+ ..+++|+.
T Consensus 20 ~~~~L~L~~n~I~~Ie~L-~~~l~~L~~L~Ls~----N~I~~l~~--l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~ 92 (175)
T PF14580_consen 20 KLRELNLRGNQISTIENL-GATLDKLEVLDLSN----NQITKLEG--LPGLPRLKTLDLSNNRISSISEGLDKNLPNLQE 92 (175)
T ss_dssp ----------------S---TT-TT--EEE-TT----S--S--TT------TT--EEE--SS---S-CHHHHHH-TT--E
T ss_pred ccccccccccccccccch-hhhhcCCCEEECCC----CCCccccC--ccChhhhhhcccCCCCCCccccchHHhCCcCCE
Confidence 345555555555555432 01345555665554 44444443 355555666666666655554333 23555666
Q ss_pred eecCCCCCCC---CcccCCCCCCCEEeecCCCCC
Q 040933 262 LSLCYCKLLD---ISVTGELKKLEILCLRGSDIQ 292 (298)
Q Consensus 262 L~l~~~~l~~---p~~i~~L~~L~~L~l~~~~l~ 292 (298)
|++++|+|.. ...+..+++|++|++.+|.+.
T Consensus 93 L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 93 LYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp EE-TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred EECcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence 6666555544 234445555566666555443
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=98.86 E-value=5.2e-10 Score=102.19 Aligned_cols=115 Identities=21% Similarity=0.290 Sum_probs=94.9
Q ss_pred hhhccCccEEEEeCCCCccCCCCcCCCCCCCcEEecccccccccccccChHHHhCCCCccEEEecCCCCCCCCccccCCC
Q 040933 178 ENAVKLYTSIVLRDIKTNVLPDRVLPECPQLKLFSVRADHQESSSLTIPNNFFEKMIQVRVINLTYMNLLPLPSSLGLLS 257 (298)
Q Consensus 178 ~~~~~~~~~l~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~l~~~~i~~lP~~i~~L~ 257 (298)
.-..+.++.+.+++|++.+.|.. +...+++-+|.+++ +.+..||...|-++.-|-+||||+|++..+|+.+-.|.
T Consensus 99 iF~l~dLt~lDLShNqL~EvP~~-LE~AKn~iVLNLS~----N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~ 173 (1255)
T KOG0444|consen 99 IFRLKDLTILDLSHNQLREVPTN-LEYAKNSIVLNLSY----NNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLS 173 (1255)
T ss_pred hcccccceeeecchhhhhhcchh-hhhhcCcEEEEccc----CccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHh
Confidence 34467889999999999999987 36677888999987 78999999999999999999999999999999999999
Q ss_pred CCcEeecCCCCCCC--CcccCCCCCCCEEeecCCC--CCCCCCC
Q 040933 258 NLRTLSLCYCKLLD--ISVTGELKKLEILCLRGSD--IQQLPVE 297 (298)
Q Consensus 258 ~L~~L~l~~~~l~~--p~~i~~L~~L~~L~l~~~~--l~~lP~~ 297 (298)
+|++|.|++|++.. ...+..+++|++|.+++++ +..+|.+
T Consensus 174 ~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Pts 217 (1255)
T KOG0444|consen 174 MLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTS 217 (1255)
T ss_pred hhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCc
Confidence 99999999998665 5556666777777777662 5566654
No 11
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.82 E-value=2.8e-09 Score=84.67 Aligned_cols=101 Identities=20% Similarity=0.219 Sum_probs=55.6
Q ss_pred ccCccEEEEeCCCCccCCCCcCCCCCCCcEEecccccccccccccChHHHhCCCCccEEEecCCCCCCCC--ccccCCCC
Q 040933 181 VKLYTSIVLRDIKTNVLPDRVLPECPQLKLFSVRADHQESSSLTIPNNFFEKMIQVRVINLTYMNLLPLP--SSLGLLSN 258 (298)
Q Consensus 181 ~~~~~~l~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~l~~~~i~~lP--~~i~~L~~ 258 (298)
..+++.+++++|.+..+... ..+++|++|.+++ +.+..+++.+...+++|+.|++++|+|..+- ..+..+++
T Consensus 41 l~~L~~L~Ls~N~I~~l~~l--~~L~~L~~L~L~~----N~I~~i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~ 114 (175)
T PF14580_consen 41 LDKLEVLDLSNNQITKLEGL--PGLPRLKTLDLSN----NRISSISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPK 114 (175)
T ss_dssp -TT--EEE-TTS--S--TT------TT--EEE--S----S---S-CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT
T ss_pred hcCCCEEECCCCCCccccCc--cChhhhhhcccCC----CCCCccccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCC
Confidence 46889999999999999875 8899999999998 7888887766567999999999999987753 46778999
Q ss_pred CcEeecCCCCCCC-C----cccCCCCCCCEEeec
Q 040933 259 LRTLSLCYCKLLD-I----SVTGELKKLEILCLR 287 (298)
Q Consensus 259 L~~L~l~~~~l~~-p----~~i~~L~~L~~L~l~ 287 (298)
|++|++.+|++.. + .-+..+++|+.||-.
T Consensus 115 L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 115 LRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp --EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred cceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence 9999999999776 4 468889999999854
No 12
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.80 E-value=3.9e-09 Score=69.03 Aligned_cols=58 Identities=26% Similarity=0.358 Sum_probs=42.2
Q ss_pred CCccEEEecCCCCCCCC-ccccCCCCCcEeecCCCCCCC--CcccCCCCCCCEEeecCCCC
Q 040933 234 IQVRVINLTYMNLLPLP-SSLGLLSNLRTLSLCYCKLLD--ISVTGELKKLEILCLRGSDI 291 (298)
Q Consensus 234 ~~Lr~L~l~~~~i~~lP-~~i~~L~~L~~L~l~~~~l~~--p~~i~~L~~L~~L~l~~~~l 291 (298)
++|++|++++|+++.+| ..+..+++|++|++++|.++. |..+..+++|++|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 35777777777777766 456677777777777777766 56677778888888877754
No 13
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.76 E-value=2.8e-08 Score=101.33 Aligned_cols=106 Identities=24% Similarity=0.309 Sum_probs=50.5
Q ss_pred CccEEEEeCCCCccCCCCcCCCCCCCcEEecccccccccccccChHHHhCCCCccEEEecCC-CCCCCCccccCCCCCcE
Q 040933 183 LYTSIVLRDIKTNVLPDRVLPECPQLKLFSVRADHQESSSLTIPNNFFEKMIQVRVINLTYM-NLLPLPSSLGLLSNLRT 261 (298)
Q Consensus 183 ~~~~l~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~l~~~-~i~~lP~~i~~L~~L~~ 261 (298)
++|.+.+..+.+..+|.. ....+|+.|.+.+ +.+..++.++ ..+++|++|+++++ .+..+| .++.+++|++
T Consensus 590 ~Lr~L~~~~~~l~~lP~~--f~~~~L~~L~L~~----s~l~~L~~~~-~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~ 661 (1153)
T PLN03210 590 KLRLLRWDKYPLRCMPSN--FRPENLVKLQMQG----SKLEKLWDGV-HSLTGLRNIDLRGSKNLKEIP-DLSMATNLET 661 (1153)
T ss_pred ccEEEEecCCCCCCCCCc--CCccCCcEEECcC----cccccccccc-ccCCCCCEEECCCCCCcCcCC-ccccCCcccE
Confidence 455555555555555544 2344555555544 3344444433 44455555555544 233344 3444455555
Q ss_pred eecCCCC-CCC-CcccCCCCCCCEEeecCC-CCCCCCC
Q 040933 262 LSLCYCK-LLD-ISVTGELKKLEILCLRGS-DIQQLPV 296 (298)
Q Consensus 262 L~l~~~~-l~~-p~~i~~L~~L~~L~l~~~-~l~~lP~ 296 (298)
|++++|. +.. |.+++++++|+.|++++| ++..+|.
T Consensus 662 L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~ 699 (1153)
T PLN03210 662 LKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPT 699 (1153)
T ss_pred EEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCC
Confidence 5555544 333 444555555555555544 3444443
No 14
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.72 E-value=2.6e-07 Score=89.33 Aligned_cols=103 Identities=20% Similarity=0.301 Sum_probs=72.4
Q ss_pred hccCccEEEEeCCCCccCCCCcCCCCCCCcEEecccccccccccccChHHHhCCCCccEEEecCCCCCCCCccccCCCCC
Q 040933 180 AVKLYTSIVLRDIKTNVLPDRVLPECPQLKLFSVRADHQESSSLTIPNNFFEKMIQVRVINLTYMNLLPLPSSLGLLSNL 259 (298)
Q Consensus 180 ~~~~~~~l~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~l~~~~i~~lP~~i~~L~~L 259 (298)
.+..++.|.+.+|.+..+|... +++|++|.+.+ +.+..+|..++ .+|+.|++++|++..+|..+. .+|
T Consensus 197 Ip~~L~~L~Ls~N~LtsLP~~l---~~nL~~L~Ls~----N~LtsLP~~l~---~~L~~L~Ls~N~L~~LP~~l~--s~L 264 (754)
T PRK15370 197 IPEQITTLILDNNELKSLPENL---QGNIKTLYANS----NQLTSIPATLP---DTIQEMELSINRITELPERLP--SAL 264 (754)
T ss_pred cccCCcEEEecCCCCCcCChhh---ccCCCEEECCC----CccccCChhhh---ccccEEECcCCccCcCChhHh--CCC
Confidence 3467888888888888887642 35788888876 45667776542 367777888887777776654 467
Q ss_pred cEeecCCCCCCC-CcccCCCCCCCEEeecCCCCCCCCC
Q 040933 260 RTLSLCYCKLLD-ISVTGELKKLEILCLRGSDIQQLPV 296 (298)
Q Consensus 260 ~~L~l~~~~l~~-p~~i~~L~~L~~L~l~~~~l~~lP~ 296 (298)
++|++++|++.. |..+. .+|++|++++|++..+|.
T Consensus 265 ~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~Lt~LP~ 300 (754)
T PRK15370 265 QSLDLFHNKISCLPENLP--EELRYLSVYDNSIRTLPA 300 (754)
T ss_pred CEEECcCCccCccccccC--CCCcEEECCCCccccCcc
Confidence 777777777777 66554 467777777777777664
No 15
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=98.71 E-value=5.8e-10 Score=96.81 Aligned_cols=111 Identities=23% Similarity=0.245 Sum_probs=98.8
Q ss_pred hccCccEEEEeCCCCccCCCCcCCCCCCCcEEecccccccccccccChHHHhCCCCccEEEecCCCCCCCCcccc-CCCC
Q 040933 180 AVKLYTSIVLRDIKTNVLPDRVLPECPQLKLFSVRADHQESSSLTIPNNFFEKMIQVRVINLTYMNLLPLPSSLG-LLSN 258 (298)
Q Consensus 180 ~~~~~~~l~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~l~~~~i~~lP~~i~-~L~~ 258 (298)
.++.+.++....|.++.+|+.+ ..+.+|.-|++.. +.+..+|. |..+..|..|+++.|.|+-+|..++ .|.+
T Consensus 181 ~m~~L~~ld~~~N~L~tlP~~l-g~l~~L~~LyL~~----Nki~~lPe--f~gcs~L~Elh~g~N~i~~lpae~~~~L~~ 253 (565)
T KOG0472|consen 181 AMKRLKHLDCNSNLLETLPPEL-GGLESLELLYLRR----NKIRFLPE--FPGCSLLKELHVGENQIEMLPAEHLKHLNS 253 (565)
T ss_pred HHHHHHhcccchhhhhcCChhh-cchhhhHHHHhhh----cccccCCC--CCccHHHHHHHhcccHHHhhHHHHhccccc
Confidence 4677888999999999998773 7777888888876 78888885 6999999999999999999998887 8999
Q ss_pred CcEeecCCCCCCC-CcccCCCCCCCEEeecCCCCCCCCCC
Q 040933 259 LRTLSLCYCKLLD-ISVTGELKKLEILCLRGSDIQQLPVE 297 (298)
Q Consensus 259 L~~L~l~~~~l~~-p~~i~~L~~L~~L~l~~~~l~~lP~~ 297 (298)
+.+||+++|++++ |.+++.|.+|..||+++|.|..+|.+
T Consensus 254 l~vLDLRdNklke~Pde~clLrsL~rLDlSNN~is~Lp~s 293 (565)
T KOG0472|consen 254 LLVLDLRDNKLKEVPDEICLLRSLERLDLSNNDISSLPYS 293 (565)
T ss_pred ceeeeccccccccCchHHHHhhhhhhhcccCCccccCCcc
Confidence 9999999999999 99999999999999999999999965
No 16
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.66 E-value=1.7e-08 Score=66.00 Aligned_cols=60 Identities=27% Similarity=0.469 Sum_probs=49.5
Q ss_pred CCCcEEecccccccccccccChHHHhCCCCccEEEecCCCCCCCC-ccccCCCCCcEeecCCCCC
Q 040933 206 PQLKLFSVRADHQESSSLTIPNNFFEKMIQVRVINLTYMNLLPLP-SSLGLLSNLRTLSLCYCKL 269 (298)
Q Consensus 206 ~~L~~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~l~~~~i~~lP-~~i~~L~~L~~L~l~~~~l 269 (298)
|+|++|.+.+ +.+..+|+..|..+++|++|++++|.++.+| ..+..+++|++|++++|++
T Consensus 1 p~L~~L~l~~----n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSN----NKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETS----STESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCC----CCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 4678888887 5778888888888999999999988888875 5678888999999988864
No 17
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.65 E-value=1.5e-08 Score=99.43 Aligned_cols=105 Identities=23% Similarity=0.337 Sum_probs=92.3
Q ss_pred cCccEEEEeCCC--CccCCCCcCCCCCCCcEEecccccccccccccChHHHhCCCCccEEEecCCCCCCCCccccCCCCC
Q 040933 182 KLYTSIVLRDIK--TNVLPDRVLPECPQLKLFSVRADHQESSSLTIPNNFFEKMIQVRVINLTYMNLLPLPSSLGLLSNL 259 (298)
Q Consensus 182 ~~~~~l~l~~~~--~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~l~~~~i~~lP~~i~~L~~L 259 (298)
.+++.+-+..|. +..++...|..++.|++|++++ +.....+|..+ +.+-+||||+++++.++.+|..+++|..|
T Consensus 545 ~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~---~~~l~~LP~~I-~~Li~LryL~L~~t~I~~LP~~l~~Lk~L 620 (889)
T KOG4658|consen 545 PKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSG---NSSLSKLPSSI-GELVHLRYLDLSDTGISHLPSGLGNLKKL 620 (889)
T ss_pred CccceEEEeecchhhhhcCHHHHhhCcceEEEECCC---CCccCcCChHH-hhhhhhhcccccCCCccccchHHHHHHhh
Confidence 468899888886 6777776678999999999999 78899999999 99999999999999999999999999999
Q ss_pred cEeecCCCC-CCC-CcccCCCCCCCEEeecCCC
Q 040933 260 RTLSLCYCK-LLD-ISVTGELKKLEILCLRGSD 290 (298)
Q Consensus 260 ~~L~l~~~~-l~~-p~~i~~L~~L~~L~l~~~~ 290 (298)
.||++..+. +.. |.....|++|++|.+....
T Consensus 621 ~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 621 IYLNLEVTGRLESIPGILLELQSLRVLRLPRSA 653 (889)
T ss_pred heeccccccccccccchhhhcccccEEEeeccc
Confidence 999999988 555 5666669999999987653
No 18
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=98.65 E-value=1.5e-09 Score=99.29 Aligned_cols=116 Identities=16% Similarity=0.212 Sum_probs=58.6
Q ss_pred hccCccEEEEeCCCCccCCCCcCCCCCCCcEEeccccc-------------------ccccccccChHHHhCCCCccEEE
Q 040933 180 AVKLYTSIVLRDIKTNVLPDRVLPECPQLKLFSVRADH-------------------QESSSLTIPNNFFEKMIQVRVIN 240 (298)
Q Consensus 180 ~~~~~~~l~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~-------------------~~~~~~~lp~~~~~~l~~Lr~L~ 240 (298)
...+++.+.++.|++..+|.. +.++++|+.|.++++. ..+.+..+|+.+ .+++.|+.|.
T Consensus 220 ~l~NL~dvDlS~N~Lp~vPec-ly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt~LP~av-cKL~kL~kLy 297 (1255)
T KOG0444|consen 220 DLHNLRDVDLSENNLPIVPEC-LYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLTVLPDAV-CKLTKLTKLY 297 (1255)
T ss_pred hhhhhhhccccccCCCcchHH-HhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhccchHHH-hhhHHHHHHH
Confidence 445566666666666666655 2556666666666510 002333344433 4444444444
Q ss_pred ecCCC--CCCCCccccCCCCCcEeecCCCCCCC-CcccCCCCCCCEEeecCCCCCCCCCC
Q 040933 241 LTYMN--LLPLPSSLGLLSNLRTLSLCYCKLLD-ISVTGELKKLEILCLRGSDIQQLPVE 297 (298)
Q Consensus 241 l~~~~--i~~lP~~i~~L~~L~~L~l~~~~l~~-p~~i~~L~~L~~L~l~~~~l~~lP~~ 297 (298)
+.+|+ +..+|+.||+|.+|+.+.+.+|.+.- |.++++..+|+.|.|+.|++-.||..
T Consensus 298 ~n~NkL~FeGiPSGIGKL~~Levf~aanN~LElVPEglcRC~kL~kL~L~~NrLiTLPea 357 (1255)
T KOG0444|consen 298 ANNNKLTFEGIPSGIGKLIQLEVFHAANNKLELVPEGLCRCVKLQKLKLDHNRLITLPEA 357 (1255)
T ss_pred hccCcccccCCccchhhhhhhHHHHhhccccccCchhhhhhHHHHHhcccccceeechhh
Confidence 44442 23345555555555555555544444 55555555555555555555555543
No 19
>PLN03150 hypothetical protein; Provisional
Probab=98.62 E-value=6.5e-08 Score=92.45 Aligned_cols=102 Identities=19% Similarity=0.246 Sum_probs=67.7
Q ss_pred ccEEEEeCCCCccCCCCcCCCCCCCcEEecccccccccccccChHHHhCCCCccEEEecCCCCCC-CCccccCCCCCcEe
Q 040933 184 YTSIVLRDIKTNVLPDRVLPECPQLKLFSVRADHQESSSLTIPNNFFEKMIQVRVINLTYMNLLP-LPSSLGLLSNLRTL 262 (298)
Q Consensus 184 ~~~l~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~l~~~~i~~-lP~~i~~L~~L~~L 262 (298)
++.|.+.++.+....+..+..+++|+.|.+++ +.....+|..+ ..+++|++|+|++|++.. +|..++.|.+|++|
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~---N~l~g~iP~~~-~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L 495 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSG---NSIRGNIPPSL-GSITSLEVLDLSYNSFNGSIPESLGQLTSLRIL 495 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCC---CcccCcCChHH-hCCCCCCEEECCCCCCCCCCchHHhcCCCCCEE
Confidence 55666677666533332346677777777776 34344666654 777777777777777764 67777777777777
Q ss_pred ecCCCCCCC--CcccCCC-CCCCEEeecCC
Q 040933 263 SLCYCKLLD--ISVTGEL-KKLEILCLRGS 289 (298)
Q Consensus 263 ~l~~~~l~~--p~~i~~L-~~L~~L~l~~~ 289 (298)
+|++|.+.. |..++.+ .++..+++.+|
T Consensus 496 ~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N 525 (623)
T PLN03150 496 NLNGNSLSGRVPAALGGRLLHRASFNFTDN 525 (623)
T ss_pred ECcCCcccccCChHHhhccccCceEEecCC
Confidence 777777665 6666653 35667777766
No 20
>PLN03150 hypothetical protein; Provisional
Probab=98.59 E-value=1.5e-07 Score=90.00 Aligned_cols=87 Identities=26% Similarity=0.447 Sum_probs=75.2
Q ss_pred CCcEEecccccccccccccChHHHhCCCCccEEEecCCCCC-CCCccccCCCCCcEeecCCCCCCC--CcccCCCCCCCE
Q 040933 207 QLKLFSVRADHQESSSLTIPNNFFEKMIQVRVINLTYMNLL-PLPSSLGLLSNLRTLSLCYCKLLD--ISVTGELKKLEI 283 (298)
Q Consensus 207 ~L~~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~l~~~~i~-~lP~~i~~L~~L~~L~l~~~~l~~--p~~i~~L~~L~~ 283 (298)
.++.|.+.+ +.....+|..+ ..+++|+.|+|++|.+. .+|..++.+.+|++|+|++|.+.. |..+++|++|++
T Consensus 419 ~v~~L~L~~---n~L~g~ip~~i-~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~ 494 (623)
T PLN03150 419 FIDGLGLDN---QGLRGFIPNDI-SKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRI 494 (623)
T ss_pred EEEEEECCC---CCccccCCHHH-hCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCE
Confidence 467788887 45555778776 99999999999999997 489999999999999999999886 899999999999
Q ss_pred EeecCCCCC-CCCCC
Q 040933 284 LCLRGSDIQ-QLPVE 297 (298)
Q Consensus 284 L~l~~~~l~-~lP~~ 297 (298)
|+|++|++. .+|..
T Consensus 495 L~Ls~N~l~g~iP~~ 509 (623)
T PLN03150 495 LNLNGNSLSGRVPAA 509 (623)
T ss_pred EECcCCcccccCChH
Confidence 999999876 67753
No 21
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=98.57 E-value=1.6e-08 Score=91.94 Aligned_cols=115 Identities=21% Similarity=0.256 Sum_probs=81.0
Q ss_pred CccEEEEeCCCCccCCCCcCCCCCCCcEEeccccc--------------------ccccccccChHHHhCCCCccEEEec
Q 040933 183 LYTSIVLRDIKTNVLPDRVLPECPQLKLFSVRADH--------------------QESSSLTIPNNFFEKMIQVRVINLT 242 (298)
Q Consensus 183 ~~~~l~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~--------------------~~~~~~~lp~~~~~~l~~Lr~L~l~ 242 (298)
.+..+.+..|.+..+|..+|..+++|+.|.+..+. ..+.+..+.++.|-.+..+++|+|+
T Consensus 198 sL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~ 277 (873)
T KOG4194|consen 198 SLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLE 277 (873)
T ss_pred hheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecc
Confidence 45555555555555555555555555555444310 0145666667777778888888888
Q ss_pred CCCCCCCC-ccccCCCCCcEeecCCCCCCC--CcccCCCCCCCEEeecCCCCCCCCCC
Q 040933 243 YMNLLPLP-SSLGLLSNLRTLSLCYCKLLD--ISVTGELKKLEILCLRGSDIQQLPVE 297 (298)
Q Consensus 243 ~~~i~~lP-~~i~~L~~L~~L~l~~~~l~~--p~~i~~L~~L~~L~l~~~~l~~lP~~ 297 (298)
.|++..+- .++.+|+.|+.|+|++|.|.. ++++...++|+.|+|+.|+|.++|++
T Consensus 278 ~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~ 335 (873)
T KOG4194|consen 278 TNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEG 335 (873)
T ss_pred cchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChh
Confidence 88888764 567788888899999988888 88888888999999999888888763
No 22
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.56 E-value=1.2e-08 Score=85.65 Aligned_cols=108 Identities=20% Similarity=0.261 Sum_probs=68.4
Q ss_pred ccCccEEEEeCCCCccCCCCcCCCCCCCcEEecccccccccccccChHHHhCCCCccEEEe-------------------
Q 040933 181 VKLYTSIVLRDIKTNVLPDRVLPECPQLKLFSVRADHQESSSLTIPNNFFEKMIQVRVINL------------------- 241 (298)
Q Consensus 181 ~~~~~~l~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~l------------------- 241 (298)
++.++.+.+++|.+..+..++ .-.|.+|.|+++. +.+..+.. +..+.+|..|||
T Consensus 283 Wq~LtelDLS~N~I~~iDESv-KL~Pkir~L~lS~----N~i~~v~n--La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIK 355 (490)
T KOG1259|consen 283 WQELTELDLSGNLITQIDESV-KLAPKLRRLILSQ----NRIRTVQN--LAELPQLQLLDLSGNLLAECVGWHLKLGNIK 355 (490)
T ss_pred Hhhhhhccccccchhhhhhhh-hhccceeEEeccc----cceeeehh--hhhcccceEeecccchhHhhhhhHhhhcCEe
Confidence 444555666666665554442 3345555555554 33333332 244444445554
Q ss_pred ----cCCCCCCCCccccCCCCCcEeecCCCCCCC---CcccCCCCCCCEEeecCCCCCCCCC
Q 040933 242 ----TYMNLLPLPSSLGLLSNLRTLSLCYCKLLD---ISVTGELKKLEILCLRGSDIQQLPV 296 (298)
Q Consensus 242 ----~~~~i~~lP~~i~~L~~L~~L~l~~~~l~~---p~~i~~L~~L~~L~l~~~~l~~lP~ 296 (298)
+.|.|+.+. .+++|..|.+|++++|+|.. ..+||+|+.|++|.+.+|.+..+|+
T Consensus 356 tL~La~N~iE~LS-GL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~vd 416 (490)
T KOG1259|consen 356 TLKLAQNKIETLS-GLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSVD 416 (490)
T ss_pred eeehhhhhHhhhh-hhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccch
Confidence 444444442 66778888999999998877 6789999999999999988887764
No 23
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=98.45 E-value=2.6e-07 Score=84.17 Aligned_cols=107 Identities=21% Similarity=0.263 Sum_probs=65.6
Q ss_pred cCccEEEEeCCCCccCCCCcCCCCCCCcEEecccccccccccccChHHHhCCCCccEEEecCCCCCCC-CccccCCCCCc
Q 040933 182 KLYTSIVLRDIKTNVLPDRVLPECPQLKLFSVRADHQESSSLTIPNNFFEKMIQVRVINLTYMNLLPL-PSSLGLLSNLR 260 (298)
Q Consensus 182 ~~~~~l~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~l~~~~i~~l-P~~i~~L~~L~ 260 (298)
.++..|.+.+|.+..+....+..++.||+|+++. +.+..+|...|..-.++++|+|++|.|+.+ -..+..|.+|.
T Consensus 125 ghl~~L~L~~N~I~sv~se~L~~l~alrslDLSr----N~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~ 200 (873)
T KOG4194|consen 125 GHLEKLDLRHNLISSVTSEELSALPALRSLDLSR----NLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLL 200 (873)
T ss_pred cceeEEeeeccccccccHHHHHhHhhhhhhhhhh----chhhcccCCCCCCCCCceEEeeccccccccccccccccchhe
Confidence 3456666666666655554445566666666665 555556655555556666666666666665 24566666666
Q ss_pred EeecCCCCCCC-C-cccCCCCCCCEEeecCCCCC
Q 040933 261 TLSLCYCKLLD-I-SVTGELKKLEILCLRGSDIQ 292 (298)
Q Consensus 261 ~L~l~~~~l~~-p-~~i~~L~~L~~L~l~~~~l~ 292 (298)
+|.|+.|.++. | ..|.+|++|+.|+|..|+|+
T Consensus 201 tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~ir 234 (873)
T KOG4194|consen 201 TLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIR 234 (873)
T ss_pred eeecccCcccccCHHHhhhcchhhhhhcccccee
Confidence 77777776666 4 34555777777777666554
No 24
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.44 E-value=1.3e-08 Score=96.71 Aligned_cols=85 Identities=22% Similarity=0.315 Sum_probs=50.7
Q ss_pred CCCCCCcEEecccccccccccccChHHHhCCCCccEEEecCCCCCCCCccccCCCCCcEeecCCCCCCC-CcccCCCCCC
Q 040933 203 PECPQLKLFSVRADHQESSSLTIPNNFFEKMIQVRVINLTYMNLLPLPSSLGLLSNLRTLSLCYCKLLD-ISVTGELKKL 281 (298)
Q Consensus 203 ~~~~~L~~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~l~~~~i~~lP~~i~~L~~L~~L~l~~~~l~~-p~~i~~L~~L 281 (298)
..+++|+.|.+++ +.+..+|+..+.++..|+.|+||+|+++.+|..+.++..|++|...+|.+.. | .+.+++.|
T Consensus 380 ~~~~hLKVLhLsy----NrL~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~~fP-e~~~l~qL 454 (1081)
T KOG0618|consen 380 VNFKHLKVLHLSY----NRLNSFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLLSFP-ELAQLPQL 454 (1081)
T ss_pred ccccceeeeeecc----cccccCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCceeech-hhhhcCcc
Confidence 5566666666665 5555666666666666666666666666666656665556666555555555 4 55555555
Q ss_pred CEEeecCCCCC
Q 040933 282 EILCLRGSDIQ 292 (298)
Q Consensus 282 ~~L~l~~~~l~ 292 (298)
+++|++.|+++
T Consensus 455 ~~lDlS~N~L~ 465 (1081)
T KOG0618|consen 455 KVLDLSCNNLS 465 (1081)
T ss_pred eEEecccchhh
Confidence 55555555443
No 25
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.41 E-value=3.4e-06 Score=81.60 Aligned_cols=60 Identities=22% Similarity=0.255 Sum_probs=41.9
Q ss_pred CCccEEEecCCCCCCCCccccCCCCCcEeecCCCCCCC-CcccCC----------------C-CCCCEEeecCCCCCCCC
Q 040933 234 IQVRVINLTYMNLLPLPSSLGLLSNLRTLSLCYCKLLD-ISVTGE----------------L-KKLEILCLRGSDIQQLP 295 (298)
Q Consensus 234 ~~Lr~L~l~~~~i~~lP~~i~~L~~L~~L~l~~~~l~~-p~~i~~----------------L-~~L~~L~l~~~~l~~lP 295 (298)
..|+.|++++|+++.+|.. +.+|++|++++|.+.. |....+ + .+|++|++++|+|..+|
T Consensus 282 ~~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~N~L~~Lp~lp~~L~~L~Ls~N~L~~LP~lp~~Lq~LdLS~N~Ls~LP 358 (788)
T PRK15387 282 SGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPTLPSGLQELSVSDNQLASLP 358 (788)
T ss_pred hhcCEEECcCCcccccccc---ccccceeECCCCccccCCCCcccccccccccCccccccccccccceEecCCCccCCCC
Confidence 4566777777777777753 3578899999888777 542111 1 26888888888888888
Q ss_pred C
Q 040933 296 V 296 (298)
Q Consensus 296 ~ 296 (298)
.
T Consensus 359 ~ 359 (788)
T PRK15387 359 T 359 (788)
T ss_pred C
Confidence 5
No 26
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.41 E-value=4.9e-08 Score=92.93 Aligned_cols=110 Identities=19% Similarity=0.263 Sum_probs=98.0
Q ss_pred CCCchhhccCccEEEEeCCCCccCCCCcCCCCCCCcEEecccccccccccccChHHHhCCCCccEEEecCCCCCCCCccc
Q 040933 174 EWSDENAVKLYTSIVLRDIKTNVLPDRVLPECPQLKLFSVRADHQESSSLTIPNNFFEKMIQVRVINLTYMNLLPLPSSL 253 (298)
Q Consensus 174 ~~~~~~~~~~~~~l~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~l~~~~i~~lP~~i 253 (298)
.||.....++++.|.+.+|.+..+|...+.++..|+.|.++| +.+..+|+.+ ..++.|++|...+|.+..+| .+
T Consensus 375 c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSG----NkL~~Lp~tv-a~~~~L~tL~ahsN~l~~fP-e~ 448 (1081)
T KOG0618|consen 375 CFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSG----NKLTTLPDTV-ANLGRLHTLRAHSNQLLSFP-EL 448 (1081)
T ss_pred chhhhccccceeeeeecccccccCCHHHHhchHHhHHHhccc----chhhhhhHHH-HhhhhhHHHhhcCCceeech-hh
Confidence 566667788999999999999999998888999999999998 8899999888 89999999999999999999 99
Q ss_pred cCCCCCcEeecCCCCCCC---CcccCCCCCCCEEeecCCC
Q 040933 254 GLLSNLRTLSLCYCKLLD---ISVTGELKKLEILCLRGSD 290 (298)
Q Consensus 254 ~~L~~L~~L~l~~~~l~~---p~~i~~L~~L~~L~l~~~~ 290 (298)
..+..|+++|++.|.++. |..... ++|++||++||.
T Consensus 449 ~~l~qL~~lDlS~N~L~~~~l~~~~p~-p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 449 AQLPQLKVLDLSCNNLSEVTLPEALPS-PNLKYLDLSGNT 487 (1081)
T ss_pred hhcCcceEEecccchhhhhhhhhhCCC-cccceeeccCCc
Confidence 999999999999999887 443333 899999999983
No 27
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.40 E-value=1.1e-06 Score=85.15 Aligned_cols=102 Identities=16% Similarity=0.243 Sum_probs=85.3
Q ss_pred cCccEEEEeCCCCccCCCCcCCCCCCCcEEecccccccccccccChHHHhCCCCccEEEecCCCCCCCCccccCCCCCcE
Q 040933 182 KLYTSIVLRDIKTNVLPDRVLPECPQLKLFSVRADHQESSSLTIPNNFFEKMIQVRVINLTYMNLLPLPSSLGLLSNLRT 261 (298)
Q Consensus 182 ~~~~~l~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~l~~~~i~~lP~~i~~L~~L~~ 261 (298)
++...+.+.++.+..+|..+ .++++.|.+.+ +.+..+|..++ .+|++|++++|+++.+|..+. .+|+.
T Consensus 178 ~~~~~L~L~~~~LtsLP~~I---p~~L~~L~Ls~----N~LtsLP~~l~---~nL~~L~Ls~N~LtsLP~~l~--~~L~~ 245 (754)
T PRK15370 178 NNKTELRLKILGLTTIPACI---PEQITTLILDN----NELKSLPENLQ---GNIKTLYANSNQLTSIPATLP--DTIQE 245 (754)
T ss_pred cCceEEEeCCCCcCcCCccc---ccCCcEEEecC----CCCCcCChhhc---cCCCEEECCCCccccCChhhh--ccccE
Confidence 35678899998998888752 35799999987 67888998764 589999999999999997665 47999
Q ss_pred eecCCCCCCC-CcccCCCCCCCEEeecCCCCCCCCCC
Q 040933 262 LSLCYCKLLD-ISVTGELKKLEILCLRGSDIQQLPVE 297 (298)
Q Consensus 262 L~l~~~~l~~-p~~i~~L~~L~~L~l~~~~l~~lP~~ 297 (298)
|++++|.+.. |..+. .+|+.|++++|++..+|..
T Consensus 246 L~Ls~N~L~~LP~~l~--s~L~~L~Ls~N~L~~LP~~ 280 (754)
T PRK15370 246 MELSINRITELPERLP--SALQSLDLFHNKISCLPEN 280 (754)
T ss_pred EECcCCccCcCChhHh--CCCCEEECcCCccCccccc
Confidence 9999999988 87765 5899999999999998864
No 28
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.40 E-value=3.8e-08 Score=82.82 Aligned_cols=84 Identities=20% Similarity=0.207 Sum_probs=66.5
Q ss_pred CCCCcEEecccccccccccccChHHHhCCCCccEEEecCCCCCCCCccccCCCCCcEeecCCCCCCC-C-----------
Q 040933 205 CPQLKLFSVRADHQESSSLTIPNNFFEKMIQVRVINLTYMNLLPLPSSLGLLSNLRTLSLCYCKLLD-I----------- 272 (298)
Q Consensus 205 ~~~L~~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~l~~~~i~~lP~~i~~L~~L~~L~l~~~~l~~-p----------- 272 (298)
-..|..+++++ +.+..+..+. .-.+.+|+|++++|.|..+- ++..|++|+.|+|++|.+.. -
T Consensus 283 Wq~LtelDLS~----N~I~~iDESv-KL~Pkir~L~lS~N~i~~v~-nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKt 356 (490)
T KOG1259|consen 283 WQELTELDLSG----NLITQIDESV-KLAPKLRRLILSQNRIRTVQ-NLAELPQLQLLDLSGNLLAECVGWHLKLGNIKT 356 (490)
T ss_pred Hhhhhhccccc----cchhhhhhhh-hhccceeEEeccccceeeeh-hhhhcccceEeecccchhHhhhhhHhhhcCEee
Confidence 35688899998 7788888777 88899999999999998775 48888899999999877654 2
Q ss_pred -----------cccCCCCCCCEEeecCCCCCCC
Q 040933 273 -----------SVTGELKKLEILCLRGSDIQQL 294 (298)
Q Consensus 273 -----------~~i~~L~~L~~L~l~~~~l~~l 294 (298)
+.+++|.+|..||+++|+|..+
T Consensus 357 L~La~N~iE~LSGL~KLYSLvnLDl~~N~Ie~l 389 (490)
T KOG1259|consen 357 LKLAQNKIETLSGLRKLYSLVNLDLSSNQIEEL 389 (490)
T ss_pred eehhhhhHhhhhhhHhhhhheeccccccchhhH
Confidence 3556677788888888876654
No 29
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.38 E-value=2.8e-07 Score=55.64 Aligned_cols=37 Identities=30% Similarity=0.440 Sum_probs=22.5
Q ss_pred CccEEEecCCCCCCCCccccCCCCCcEeecCCCCCCC
Q 040933 235 QVRVINLTYMNLLPLPSSLGLLSNLRTLSLCYCKLLD 271 (298)
Q Consensus 235 ~Lr~L~l~~~~i~~lP~~i~~L~~L~~L~l~~~~l~~ 271 (298)
+|++|++++|+|+.+|+.+++|++|++|++++|+++.
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSB
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCC
Confidence 5666666666666666556666666666666666554
No 30
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.36 E-value=4.4e-07 Score=54.77 Aligned_cols=40 Identities=28% Similarity=0.347 Sum_probs=32.9
Q ss_pred CCCcEeecCCCCCCC-CcccCCCCCCCEEeecCCCCCCCCC
Q 040933 257 SNLRTLSLCYCKLLD-ISVTGELKKLEILCLRGSDIQQLPV 296 (298)
Q Consensus 257 ~~L~~L~l~~~~l~~-p~~i~~L~~L~~L~l~~~~l~~lP~ 296 (298)
++|++|++++|+++. |+.+++|++|++|++++|+++++|.
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~~ 41 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDISP 41 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEGG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCcC
Confidence 478999999999999 7779999999999999998887763
No 31
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.27 E-value=2.8e-06 Score=82.22 Aligned_cols=60 Identities=22% Similarity=0.239 Sum_probs=37.9
Q ss_pred CCCccEEEecCCCCCCCCccc---cCC--------------CCCcEeecCCCCCCC-CcccCCCCCCCEEeecCCCCCCC
Q 040933 233 MIQVRVINLTYMNLLPLPSSL---GLL--------------SNLRTLSLCYCKLLD-ISVTGELKKLEILCLRGSDIQQL 294 (298)
Q Consensus 233 l~~Lr~L~l~~~~i~~lP~~i---~~L--------------~~L~~L~l~~~~l~~-p~~i~~L~~L~~L~l~~~~l~~l 294 (298)
+++|+.|++++|+++.+|... ..| .+|++|++++|+++. |... .+|+.|++++|++..+
T Consensus 301 p~~L~~LdLS~N~L~~Lp~lp~~L~~L~Ls~N~L~~LP~lp~~Lq~LdLS~N~Ls~LP~lp---~~L~~L~Ls~N~L~~L 377 (788)
T PRK15387 301 PPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPTLPSGLQELSVSDNQLASLPTLP---SELYKLWAYNNRLTSL 377 (788)
T ss_pred ccccceeECCCCccccCCCCcccccccccccCccccccccccccceEecCCCccCCCCCCC---cccceehhhccccccC
Confidence 367888888888777765421 111 257788888888777 6543 3555566666655555
Q ss_pred C
Q 040933 295 P 295 (298)
Q Consensus 295 P 295 (298)
|
T Consensus 378 P 378 (788)
T PRK15387 378 P 378 (788)
T ss_pred c
Confidence 5
No 32
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.16 E-value=4.3e-07 Score=82.52 Aligned_cols=110 Identities=20% Similarity=0.298 Sum_probs=78.9
Q ss_pred ccCccEEEEeCCCCccCCCCcCCCCCCCcEEecccccccccccccChHHHhCCCCccEEEecCCCCCCCCccccCCCCCc
Q 040933 181 VKLYTSIVLRDIKTNVLPDRVLPECPQLKLFSVRADHQESSSLTIPNNFFEKMIQVRVINLTYMNLLPLPSSLGLLSNLR 260 (298)
Q Consensus 181 ~~~~~~l~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~l~~~~i~~lP~~i~~L~~L~ 260 (298)
.--++.+-+.+|++..+|..+ .....|..|+++. +.+..+|..+ +.+.+||.|.+..|.+..+|++++.|+ |.
T Consensus 142 ~lpLkvli~sNNkl~~lp~~i-g~~~tl~~ld~s~----nei~slpsql-~~l~slr~l~vrRn~l~~lp~El~~Lp-Li 214 (722)
T KOG0532|consen 142 DLPLKVLIVSNNKLTSLPEEI-GLLPTLAHLDVSK----NEIQSLPSQL-GYLTSLRDLNVRRNHLEDLPEELCSLP-LI 214 (722)
T ss_pred cCcceeEEEecCccccCCccc-ccchhHHHhhhhh----hhhhhchHHh-hhHHHHHHHHHhhhhhhhCCHHHhCCc-ee
Confidence 344666777777777777663 3555666666665 5666777766 777777777777777777777777554 77
Q ss_pred EeecCCCCCCC-CcccCCCCCCCEEeecCCCCCCCCCC
Q 040933 261 TLSLCYCKLLD-ISVTGELKKLEILCLRGSDIQQLPVE 297 (298)
Q Consensus 261 ~L~l~~~~l~~-p~~i~~L~~L~~L~l~~~~l~~lP~~ 297 (298)
.||++.|++.. |-.|.+|..||+|-|.+|.+++=|..
T Consensus 215 ~lDfScNkis~iPv~fr~m~~Lq~l~LenNPLqSPPAq 252 (722)
T KOG0532|consen 215 RLDFSCNKISYLPVDFRKMRHLQVLQLENNPLQSPPAQ 252 (722)
T ss_pred eeecccCceeecchhhhhhhhheeeeeccCCCCCChHH
Confidence 78888888777 87888888888888877777776643
No 33
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.08 E-value=2.3e-07 Score=84.23 Aligned_cols=111 Identities=23% Similarity=0.271 Sum_probs=93.4
Q ss_pred hhccCccEEEEeCCCCccCCCCcCCCCCCCcEEecccccccccccccChHHHhCCCCccEEEecCCCCCCCCccccCCCC
Q 040933 179 NAVKLYTSIVLRDIKTNVLPDRVLPECPQLKLFSVRADHQESSSLTIPNNFFEKMIQVRVINLTYMNLLPLPSSLGLLSN 258 (298)
Q Consensus 179 ~~~~~~~~l~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~l~~~~i~~lP~~i~~L~~ 258 (298)
.....++.+.+..|++..+|.. .-.--|+.|.++. +.+..+|+++ +....|..||.+.|.+..+|+.++.|..
T Consensus 118 ~~L~~lt~l~ls~NqlS~lp~~--lC~lpLkvli~sN----Nkl~~lp~~i-g~~~tl~~ld~s~nei~slpsql~~l~s 190 (722)
T KOG0532|consen 118 CNLEALTFLDLSSNQLSHLPDG--LCDLPLKVLIVSN----NKLTSLPEEI-GLLPTLAHLDVSKNEIQSLPSQLGYLTS 190 (722)
T ss_pred hhhhHHHHhhhccchhhcCChh--hhcCcceeEEEec----CccccCCccc-ccchhHHHhhhhhhhhhhchHHhhhHHH
Confidence 3456677888888888888876 3344588888886 8888999998 7889999999999999999999999999
Q ss_pred CcEeecCCCCCCC-CcccCCCCCCCEEeecCCCCCCCCCC
Q 040933 259 LRTLSLCYCKLLD-ISVTGELKKLEILCLRGSDIQQLPVE 297 (298)
Q Consensus 259 L~~L~l~~~~l~~-p~~i~~L~~L~~L~l~~~~l~~lP~~ 297 (298)
|+.|.++.|.+.. |..++. -.|..||++.|++..+|-.
T Consensus 191 lr~l~vrRn~l~~lp~El~~-LpLi~lDfScNkis~iPv~ 229 (722)
T KOG0532|consen 191 LRDLNVRRNHLEDLPEELCS-LPLIRLDFSCNKISYLPVD 229 (722)
T ss_pred HHHHHHhhhhhhhCCHHHhC-CceeeeecccCceeecchh
Confidence 9999999999888 888884 4688999999999999854
No 34
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.07 E-value=3e-07 Score=80.07 Aligned_cols=114 Identities=19% Similarity=0.211 Sum_probs=88.9
Q ss_pred hhccCccEEEEeCCCCccCCCCcCCCCCCCcEEecccccccccccccChHHHhCCCCccEEEecC-CCCCCCCc-cccCC
Q 040933 179 NAVKLYTSIVLRDIKTNVLPDRVLPECPQLKLFSVRADHQESSSLTIPNNFFEKMIQVRVINLTY-MNLLPLPS-SLGLL 256 (298)
Q Consensus 179 ~~~~~~~~l~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~l~~-~~i~~lP~-~i~~L 256 (298)
+.+.....|.+..|.++.+|+.+|..+++||.|+++. +.+..|.+..|..++.|-.|-+-+ |+|+.+|+ .++.|
T Consensus 64 ~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~----N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL 139 (498)
T KOG4237|consen 64 NLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSK----NNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGL 139 (498)
T ss_pred cCCCcceEEEeccCCcccCChhhccchhhhceecccc----cchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhH
Confidence 4566778888899999999998889999999999987 677778777788888776665554 78888884 47788
Q ss_pred CCCcEeecCCCCCCC--CcccCCCCCCCEEeecCCCCCCCCC
Q 040933 257 SNLRTLSLCYCKLLD--ISVTGELKKLEILCLRGSDIQQLPV 296 (298)
Q Consensus 257 ~~L~~L~l~~~~l~~--p~~i~~L~~L~~L~l~~~~l~~lP~ 296 (298)
..|+-|.+.-|++.- ...+..|++|..|.+-.|.++.++.
T Consensus 140 ~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~ 181 (498)
T KOG4237|consen 140 SSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICK 181 (498)
T ss_pred HHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhcc
Confidence 888888888777666 4667778888878777776666654
No 35
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=97.93 E-value=4.6e-06 Score=75.59 Aligned_cols=104 Identities=25% Similarity=0.288 Sum_probs=73.6
Q ss_pred cCccEEEEeCCCCccCCCCcCCCCC--CCcEEecccccccccccccChHHHhCCCCccEEEecCCCCCCCCccccCCCCC
Q 040933 182 KLYTSIVLRDIKTNVLPDRVLPECP--QLKLFSVRADHQESSSLTIPNNFFEKMIQVRVINLTYMNLLPLPSSLGLLSNL 259 (298)
Q Consensus 182 ~~~~~l~l~~~~~~~l~~~~~~~~~--~L~~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~l~~~~i~~lP~~i~~L~~L 259 (298)
..+..+.+.++.+..+++. .... +|+.|.+.+ +.+..+|..+ ..+++|+.|+++.|++..+|...+.+.+|
T Consensus 116 ~~l~~L~l~~n~i~~i~~~--~~~~~~nL~~L~l~~----N~i~~l~~~~-~~l~~L~~L~l~~N~l~~l~~~~~~~~~L 188 (394)
T COG4886 116 TNLTSLDLDNNNITDIPPL--IGLLKSNLKELDLSD----NKIESLPSPL-RNLPNLKNLDLSFNDLSDLPKLLSNLSNL 188 (394)
T ss_pred cceeEEecCCcccccCccc--cccchhhcccccccc----cchhhhhhhh-hccccccccccCCchhhhhhhhhhhhhhh
Confidence 4577777777777777765 3332 677777776 5666665444 77777777777777777777776677777
Q ss_pred cEeecCCCCCCC-CcccCCCCCCCEEeecCCCCC
Q 040933 260 RTLSLCYCKLLD-ISVTGELKKLEILCLRGSDIQ 292 (298)
Q Consensus 260 ~~L~l~~~~l~~-p~~i~~L~~L~~L~l~~~~l~ 292 (298)
+.|+++++.+.. |..++.+..|++|.+++|.+.
T Consensus 189 ~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~ 222 (394)
T COG4886 189 NNLDLSGNKISDLPPEIELLSALEELDLSNNSII 222 (394)
T ss_pred hheeccCCccccCchhhhhhhhhhhhhhcCCcce
Confidence 777777777777 666666667777777777433
No 36
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.93 E-value=1.1e-06 Score=65.79 Aligned_cols=85 Identities=19% Similarity=0.225 Sum_probs=69.8
Q ss_pred cCccEEEEeCCCCccCCCCcCCCCCCCcEEecccccccccccccChHHHhCCCCccEEEecCCCCCCCCccccCCCCCcE
Q 040933 182 KLYTSIVLRDIKTNVLPDRVLPECPQLKLFSVRADHQESSSLTIPNNFFEKMIQVRVINLTYMNLLPLPSSLGLLSNLRT 261 (298)
Q Consensus 182 ~~~~~l~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~l~~~~i~~lP~~i~~L~~L~~ 261 (298)
..+..+++++|.++.+|+.....++.+++|.+.. +.+..+|.++ ..++.||.|+++.|.+...|.-|..|.+|-+
T Consensus 53 ~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~----neisdvPeE~-Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~ 127 (177)
T KOG4579|consen 53 YELTKISLSDNGFKKFPKKFTIKFPTATTLNLAN----NEISDVPEEL-AAMPALRSLNLRFNPLNAEPRVIAPLIKLDM 127 (177)
T ss_pred ceEEEEecccchhhhCCHHHhhccchhhhhhcch----hhhhhchHHH-hhhHHhhhcccccCccccchHHHHHHHhHHH
Confidence 3566788889998888888667778888888876 7788888884 8888888888888888888888888888888
Q ss_pred eecCCCCCCC
Q 040933 262 LSLCYCKLLD 271 (298)
Q Consensus 262 L~l~~~~l~~ 271 (298)
|+..++.+..
T Consensus 128 Lds~~na~~e 137 (177)
T KOG4579|consen 128 LDSPENARAE 137 (177)
T ss_pred hcCCCCcccc
Confidence 8888887665
No 37
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=97.92 E-value=4.4e-06 Score=75.76 Aligned_cols=104 Identities=24% Similarity=0.365 Sum_probs=58.8
Q ss_pred CccEEEEeCCCCccCCCCcCCCCCCCcEEecccccccccccccChHHHhCCCCccEEEecCCCCCCCCccccCCCCCcEe
Q 040933 183 LYTSIVLRDIKTNVLPDRVLPECPQLKLFSVRADHQESSSLTIPNNFFEKMIQVRVINLTYMNLLPLPSSLGLLSNLRTL 262 (298)
Q Consensus 183 ~~~~l~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~l~~~~i~~lP~~i~~L~~L~~L 262 (298)
+++.+++.+|.+..++.. ...+++|+.|.+.. +.+..+|... ...+.|+.|++++|++..+|..++.+.+|++|
T Consensus 141 nL~~L~l~~N~i~~l~~~-~~~l~~L~~L~l~~----N~l~~l~~~~-~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l 214 (394)
T COG4886 141 NLKELDLSDNKIESLPSP-LRNLPNLKNLDLSF----NDLSDLPKLL-SNLSNLNNLDLSGNKISDLPPEIELLSALEEL 214 (394)
T ss_pred hcccccccccchhhhhhh-hhccccccccccCC----chhhhhhhhh-hhhhhhhheeccCCccccCchhhhhhhhhhhh
Confidence 556666666666655321 15556666666655 4555555533 35556666666666666666555555556666
Q ss_pred ecCCCCCCC-CcccCCCCCCCEEeecCCCCC
Q 040933 263 SLCYCKLLD-ISVTGELKKLEILCLRGSDIQ 292 (298)
Q Consensus 263 ~l~~~~l~~-p~~i~~L~~L~~L~l~~~~l~ 292 (298)
.++++.+.. |..+.++.++..|.+.++++.
T Consensus 215 ~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~ 245 (394)
T COG4886 215 DLSNNSIIELLSSLSNLKNLSGLELSNNKLE 245 (394)
T ss_pred hhcCCcceecchhhhhcccccccccCCceee
Confidence 666664333 555666666666665555443
No 38
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.88 E-value=3.5e-06 Score=80.92 Aligned_cols=83 Identities=19% Similarity=0.226 Sum_probs=52.0
Q ss_pred CCCCCCcEEecccccccccccccChHHHhCCCCccEEEecCCCCCCCCccccCCCCCcEeecCCCCCCC---CcccCCCC
Q 040933 203 PECPQLKLFSVRADHQESSSLTIPNNFFEKMIQVRVINLTYMNLLPLPSSLGLLSNLRTLSLCYCKLLD---ISVTGELK 279 (298)
Q Consensus 203 ~~~~~L~~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~l~~~~i~~lP~~i~~L~~L~~L~l~~~~l~~---p~~i~~L~ 279 (298)
.-+|.|++|.+.+. .....--...+.++++|+.||+|+++++.+ ..|+.|+||+.|.+++=.+.. ...+.+|+
T Consensus 145 ~~LPsL~sL~i~~~---~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~ 220 (699)
T KOG3665|consen 145 TMLPSLRSLVISGR---QFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVLSMRNLEFESYQDLIDLFNLK 220 (699)
T ss_pred hhCcccceEEecCc---eecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHHhccCCCCCchhhHHHHhccc
Confidence 45677777777662 111110112346777777777777777777 567777777777777666554 34666777
Q ss_pred CCCEEeecCC
Q 040933 280 KLEILCLRGS 289 (298)
Q Consensus 280 ~L~~L~l~~~ 289 (298)
+|++||+|..
T Consensus 221 ~L~vLDIS~~ 230 (699)
T KOG3665|consen 221 KLRVLDISRD 230 (699)
T ss_pred CCCeeecccc
Confidence 7777777765
No 39
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=97.74 E-value=1.4e-05 Score=70.72 Aligned_cols=112 Identities=20% Similarity=0.270 Sum_probs=81.8
Q ss_pred hccCccEEEEeCCCCccCC-CCcCCCCCCCcEEecccccccccccccChHHHhCCCCccEEEecCCCCCCCC--ccccCC
Q 040933 180 AVKLYTSIVLRDIKTNVLP-DRVLPECPQLKLFSVRADHQESSSLTIPNNFFEKMIQVRVINLTYMNLLPLP--SSLGLL 256 (298)
Q Consensus 180 ~~~~~~~l~l~~~~~~~l~-~~~~~~~~~L~~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~l~~~~i~~lP--~~i~~L 256 (298)
....+..|.+..+.+..-. ..+...+|+|..|.+.+ ++.+..--.+ +..++.|+.|||++|++...| .-++.|
T Consensus 195 ~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~---N~~~~~~~~~-~~i~~~L~~LdLs~N~li~~~~~~~~~~l 270 (505)
T KOG3207|consen 195 LLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEA---NEIILIKATS-TKILQTLQELDLSNNNLIDFDQGYKVGTL 270 (505)
T ss_pred hhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhc---ccccceecch-hhhhhHHhhccccCCcccccccccccccc
Confidence 4567888888888875221 11347788999999988 3322211111 356778999999999887776 678899
Q ss_pred CCCcEeecCCCCCCC---Ccc-----cCCCCCCCEEeecCCCCCCCC
Q 040933 257 SNLRTLSLCYCKLLD---ISV-----TGELKKLEILCLRGSDIQQLP 295 (298)
Q Consensus 257 ~~L~~L~l~~~~l~~---p~~-----i~~L~~L~~L~l~~~~l~~lP 295 (298)
+.|+.|+++.|.+.+ |+. ...+++|++|+++.|+++..|
T Consensus 271 ~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~ 317 (505)
T KOG3207|consen 271 PGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWR 317 (505)
T ss_pred cchhhhhccccCcchhcCCCccchhhhcccccceeeecccCcccccc
Confidence 999999999998777 543 467789999999999887665
No 40
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.74 E-value=8.2e-05 Score=66.62 Aligned_cols=59 Identities=14% Similarity=0.218 Sum_probs=27.2
Q ss_pred cCccEEEEeCCCCccCCCCcCCCCCCCcEEecccccccccccccChHHHhCCCCccEEEecCC-CCCCCC
Q 040933 182 KLYTSIVLRDIKTNVLPDRVLPECPQLKLFSVRADHQESSSLTIPNNFFEKMIQVRVINLTYM-NLLPLP 250 (298)
Q Consensus 182 ~~~~~l~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~l~~~-~i~~lP 250 (298)
.++++|.++++.+..+|.. .++|++|.+.+ +..+..+|..+ ..+|++|++++| .+..+|
T Consensus 52 ~~l~~L~Is~c~L~sLP~L----P~sLtsL~Lsn---c~nLtsLP~~L---P~nLe~L~Ls~Cs~L~sLP 111 (426)
T PRK15386 52 RASGRLYIKDCDIESLPVL----PNELTEITIEN---CNNLTTLPGSI---PEGLEKLTVCHCPEISGLP 111 (426)
T ss_pred cCCCEEEeCCCCCcccCCC----CCCCcEEEccC---CCCcccCCchh---hhhhhheEccCcccccccc
Confidence 3445555555555555421 12455555554 34444444322 134555555554 444444
No 41
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.64 E-value=1.7e-05 Score=72.48 Aligned_cols=105 Identities=22% Similarity=0.312 Sum_probs=58.9
Q ss_pred ccCccEEEEeCCCCccCCCCcCCCCCCCcEEecccccccccccccChHHHhCCCCccEEEecCCCCCCCCccccCCCCCc
Q 040933 181 VKLYTSIVLRDIKTNVLPDRVLPECPQLKLFSVRADHQESSSLTIPNNFFEKMIQVRVINLTYMNLLPLPSSLGLLSNLR 260 (298)
Q Consensus 181 ~~~~~~l~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~l~~~~i~~lP~~i~~L~~L~ 260 (298)
.+++..+.+..|.+..+... +..+++|+.|.+++ +.+..+.. +..+..|+.|++++|.|..++ .+..+.+|+
T Consensus 94 ~~~l~~l~l~~n~i~~i~~~-l~~~~~L~~L~ls~----N~I~~i~~--l~~l~~L~~L~l~~N~i~~~~-~~~~l~~L~ 165 (414)
T KOG0531|consen 94 LKSLEALDLYDNKIEKIENL-LSSLVNLQVLDLSF----NKITKLEG--LSTLTLLKELNLSGNLISDIS-GLESLKSLK 165 (414)
T ss_pred ccceeeeeccccchhhcccc-hhhhhcchheeccc----cccccccc--hhhccchhhheeccCcchhcc-CCccchhhh
Confidence 35566666666666666552 15566666666665 44544443 345555666666666666554 344456666
Q ss_pred EeecCCCCCCC-Ccc-cCCCCCCCEEeecCCCCCC
Q 040933 261 TLSLCYCKLLD-ISV-TGELKKLEILCLRGSDIQQ 293 (298)
Q Consensus 261 ~L~l~~~~l~~-p~~-i~~L~~L~~L~l~~~~l~~ 293 (298)
.+++++|.+.. ... ...+.+|+.+++.+|.+..
T Consensus 166 ~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~ 200 (414)
T KOG0531|consen 166 LLDLSYNRIVDIENDELSELISLEELDLGGNSIRE 200 (414)
T ss_pred cccCCcchhhhhhhhhhhhccchHHHhccCCchhc
Confidence 66666666555 221 3555666666666654443
No 42
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=97.64 E-value=3.2e-05 Score=67.79 Aligned_cols=106 Identities=21% Similarity=0.228 Sum_probs=68.5
Q ss_pred cCccEEEEeCCCCcc-----CCCCcCCCCCCCcEEeccccccccccc----ccChHHHhCCCCccEEEecCCCCCC----
Q 040933 182 KLYTSIVLRDIKTNV-----LPDRVLPECPQLKLFSVRADHQESSSL----TIPNNFFEKMIQVRVINLTYMNLLP---- 248 (298)
Q Consensus 182 ~~~~~l~l~~~~~~~-----l~~~~~~~~~~L~~L~l~~~~~~~~~~----~lp~~~~~~l~~Lr~L~l~~~~i~~---- 248 (298)
.+++.+.+.+|.+.. +.. .+..+.+|+.|.+.+ +.... .++.. +..+++|++|++++|.+..
T Consensus 137 ~~L~~L~L~~n~l~~~~~~~~~~-~~~~~~~L~~L~l~~---n~l~~~~~~~l~~~-l~~~~~L~~L~L~~n~i~~~~~~ 211 (319)
T cd00116 137 PALEKLVLGRNRLEGASCEALAK-ALRANRDLKELNLAN---NGIGDAGIRALAEG-LKANCNLEVLDLNNNGLTDEGAS 211 (319)
T ss_pred CCceEEEcCCCcCCchHHHHHHH-HHHhCCCcCEEECcC---CCCchHHHHHHHHH-HHhCCCCCEEeccCCccChHHHH
Confidence 577888888887762 111 234556788888877 22211 22222 2555788888888887753
Q ss_pred -CCccccCCCCCcEeecCCCCCCC--CcccCC-----CCCCCEEeecCCCCC
Q 040933 249 -LPSSLGLLSNLRTLSLCYCKLLD--ISVTGE-----LKKLEILCLRGSDIQ 292 (298)
Q Consensus 249 -lP~~i~~L~~L~~L~l~~~~l~~--p~~i~~-----L~~L~~L~l~~~~l~ 292 (298)
++..+..+++|++|++++|.+.. +..+.. .+.|+.|++++|.+.
T Consensus 212 ~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~ 263 (319)
T cd00116 212 ALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDIT 263 (319)
T ss_pred HHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCC
Confidence 34456677788888888888765 333222 368888888888764
No 43
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.63 E-value=9.7e-05 Score=59.10 Aligned_cols=102 Identities=19% Similarity=0.176 Sum_probs=83.5
Q ss_pred cCccEEEEeCCCCccCCCCcCCCCCCCcEEecccccccccccccChHHHhCCCCccEEEecCCCCCCCC--ccccCCCCC
Q 040933 182 KLYTSIVLRDIKTNVLPDRVLPECPQLKLFSVRADHQESSSLTIPNNFFEKMIQVRVINLTYMNLLPLP--SSLGLLSNL 259 (298)
Q Consensus 182 ~~~~~l~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~l~~~~i~~lP--~~i~~L~~L 259 (298)
++...+.+.+|++..++.. ..++.|.+|.+.. +.+..+.+.+-..+++|..|.|.+|+|..+- ..+..++.|
T Consensus 42 d~~d~iDLtdNdl~~l~~l--p~l~rL~tLll~n----NrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L 115 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRKLDNL--PHLPRLHTLLLNN----NRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKL 115 (233)
T ss_pred cccceecccccchhhcccC--CCccccceEEecC----CcceeeccchhhhccccceEEecCcchhhhhhcchhccCCcc
Confidence 4566788889998888775 8899999999987 7888888877677788999999999887752 345567789
Q ss_pred cEeecCCCCCCC-C----cccCCCCCCCEEeecCC
Q 040933 260 RTLSLCYCKLLD-I----SVTGELKKLEILCLRGS 289 (298)
Q Consensus 260 ~~L~l~~~~l~~-p----~~i~~L~~L~~L~l~~~ 289 (298)
++|.+-+|+++. . -.+.++++|++||.+.-
T Consensus 116 ~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 116 EYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred ceeeecCCchhcccCceeEEEEecCcceEeehhhh
Confidence 999999999776 3 47899999999998653
No 44
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=97.61 E-value=1.9e-05 Score=69.17 Aligned_cols=106 Identities=20% Similarity=0.221 Sum_probs=76.2
Q ss_pred CccEEEEeCCCCcc-----CCCCcCCCC-CCCcEEeccccccccccc----ccChHHHhCCCCccEEEecCCCCCC----
Q 040933 183 LYTSIVLRDIKTNV-----LPDRVLPEC-PQLKLFSVRADHQESSSL----TIPNNFFEKMIQVRVINLTYMNLLP---- 248 (298)
Q Consensus 183 ~~~~l~l~~~~~~~-----l~~~~~~~~-~~L~~L~l~~~~~~~~~~----~lp~~~~~~l~~Lr~L~l~~~~i~~---- 248 (298)
.++.+.+.+|.+.. +.. .+..+ ++|+.|.+.+ +.... .++. .+..+++|++|++++|.+..
T Consensus 109 ~L~~L~ls~~~~~~~~~~~l~~-~l~~~~~~L~~L~L~~---n~l~~~~~~~~~~-~~~~~~~L~~L~l~~n~l~~~~~~ 183 (319)
T cd00116 109 SLQELKLNNNGLGDRGLRLLAK-GLKDLPPALEKLVLGR---NRLEGASCEALAK-ALRANRDLKELNLANNGIGDAGIR 183 (319)
T ss_pred cccEEEeeCCccchHHHHHHHH-HHHhCCCCceEEEcCC---CcCCchHHHHHHH-HHHhCCCcCEEECcCCCCchHHHH
Confidence 48899999887752 111 12445 7899999998 33221 2222 24777899999999998873
Q ss_pred -CCccccCCCCCcEeecCCCCCCC------CcccCCCCCCCEEeecCCCCCC
Q 040933 249 -LPSSLGLLSNLRTLSLCYCKLLD------ISVTGELKKLEILCLRGSDIQQ 293 (298)
Q Consensus 249 -lP~~i~~L~~L~~L~l~~~~l~~------p~~i~~L~~L~~L~l~~~~l~~ 293 (298)
++..+..+.+|++|++++|.+.. +..+..+++|++|++++|.+..
T Consensus 184 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~ 235 (319)
T cd00116 184 ALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTD 235 (319)
T ss_pred HHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCch
Confidence 44556667799999999998864 2456778899999999997763
No 45
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.60 E-value=7.7e-06 Score=61.38 Aligned_cols=86 Identities=22% Similarity=0.288 Sum_probs=50.3
Q ss_pred CCCcEEecccccccccccccChHHHhCCCCccEEEecCCCCCCCCccccCCCCCcEeecCCCCCCC-CcccCCCCCCCEE
Q 040933 206 PQLKLFSVRADHQESSSLTIPNNFFEKMIQVRVINLTYMNLLPLPSSLGLLSNLRTLSLCYCKLLD-ISVTGELKKLEIL 284 (298)
Q Consensus 206 ~~L~~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~l~~~~i~~lP~~i~~L~~L~~L~l~~~~l~~-p~~i~~L~~L~~L 284 (298)
..|....+++ +....+|+.+-..++.+..|++++|.|..+|.++..++.|+.|+++.|++.. |..|..|.+|-.|
T Consensus 53 ~el~~i~ls~----N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~L 128 (177)
T KOG4579|consen 53 YELTKISLSD----NGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDML 128 (177)
T ss_pred ceEEEEeccc----chhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHh
Confidence 3444555554 4555566555444555666666666666666666666666666666666555 6666666666666
Q ss_pred eecCCCCCCCC
Q 040933 285 CLRGSDIQQLP 295 (298)
Q Consensus 285 ~l~~~~l~~lP 295 (298)
+..++.+.++|
T Consensus 129 ds~~na~~eid 139 (177)
T KOG4579|consen 129 DSPENARAEID 139 (177)
T ss_pred cCCCCccccCc
Confidence 66555554444
No 46
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=97.55 E-value=3.1e-06 Score=73.89 Aligned_cols=108 Identities=14% Similarity=0.146 Sum_probs=96.5
Q ss_pred hccCccEEEEeCCCCccCCCCcCCCCCCCcEEecccccccccccccChHHHhCCCCccEEEecCCCCCCCC-ccccCCCC
Q 040933 180 AVKLYTSIVLRDIKTNVLPDRVLPECPQLKLFSVRADHQESSSLTIPNNFFEKMIQVRVINLTYMNLLPLP-SSLGLLSN 258 (298)
Q Consensus 180 ~~~~~~~l~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~l~~~~i~~lP-~~i~~L~~ 258 (298)
..+++|+|++++|+++.+.+.+|.+++.+.+|.+.+ ++.++.+|...|..+..|+.|.+..|.+..++ ..+..|.+
T Consensus 89 ~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg---~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~ 165 (498)
T KOG4237|consen 89 TLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYG---NNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPS 165 (498)
T ss_pred chhhhceecccccchhhcChHhhhhhHhhhHHHhhc---CCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhh
Confidence 457899999999999999998899999999999888 79999999999999999999999999998875 56888999
Q ss_pred CcEeecCCCCCCC-Cc-ccCCCCCCCEEeecCCC
Q 040933 259 LRTLSLCYCKLLD-IS-VTGELKKLEILCLRGSD 290 (298)
Q Consensus 259 L~~L~l~~~~l~~-p~-~i~~L~~L~~L~l~~~~ 290 (298)
|..|.+.+|.++. +. ++..+.+++++.+..|.
T Consensus 166 l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np 199 (498)
T KOG4237|consen 166 LSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNP 199 (498)
T ss_pred cchhcccchhhhhhccccccchhccchHhhhcCc
Confidence 9999999999888 54 78889999998877663
No 47
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.29 E-value=8.9e-05 Score=67.74 Aligned_cols=87 Identities=23% Similarity=0.320 Sum_probs=52.0
Q ss_pred CCCCCCcEEecccccccccccccChHHHhCCCCccEEEecCCCCCCCCccccCCCCCcEeecCCCCCCCCcccCCCCCCC
Q 040933 203 PECPQLKLFSVRADHQESSSLTIPNNFFEKMIQVRVINLTYMNLLPLPSSLGLLSNLRTLSLCYCKLLDISVTGELKKLE 282 (298)
Q Consensus 203 ~~~~~L~~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~l~~~~i~~lP~~i~~L~~L~~L~l~~~~l~~p~~i~~L~~L~ 282 (298)
..+.++..+.+.+ +.+..+...+ ..+.+|++|++++|.|+.+. .+..+..|+.|++++|.+.....+..+.+|+
T Consensus 92 ~~~~~l~~l~l~~----n~i~~i~~~l-~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~l~~N~i~~~~~~~~l~~L~ 165 (414)
T KOG0531|consen 92 SKLKSLEALDLYD----NKIEKIENLL-SSLVNLQVLDLSFNKITKLE-GLSTLTLLKELNLSGNLISDISGLESLKSLK 165 (414)
T ss_pred ccccceeeeeccc----cchhhcccch-hhhhcchheecccccccccc-chhhccchhhheeccCcchhccCCccchhhh
Confidence 4555666666665 4444444322 55666666666666666654 4555666666666666666655555566666
Q ss_pred EEeecCCCCCCCC
Q 040933 283 ILCLRGSDIQQLP 295 (298)
Q Consensus 283 ~L~l~~~~l~~lP 295 (298)
.+++++|++..++
T Consensus 166 ~l~l~~n~i~~ie 178 (414)
T KOG0531|consen 166 LLDLSYNRIVDIE 178 (414)
T ss_pred cccCCcchhhhhh
Confidence 6666666555443
No 48
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.22 E-value=0.0025 Score=57.33 Aligned_cols=96 Identities=21% Similarity=0.228 Sum_probs=61.0
Q ss_pred hhccCccEEEEeC-CCCccCCCCcCCCCCCCcEEecccccccccccccChHHHhCCCCccEEEecCCC---CCCCCcccc
Q 040933 179 NAVKLYTSIVLRD-IKTNVLPDRVLPECPQLKLFSVRADHQESSSLTIPNNFFEKMIQVRVINLTYMN---LLPLPSSLG 254 (298)
Q Consensus 179 ~~~~~~~~l~l~~-~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~l~~~~---i~~lP~~i~ 254 (298)
..+..++.|.+.+ +.+..+|.. -.++|+.|.+.+ +..+..+|. +|+.|++.++. +..+|+++.
T Consensus 69 ~LP~sLtsL~Lsnc~nLtsLP~~---LP~nLe~L~Ls~---Cs~L~sLP~-------sLe~L~L~~n~~~~L~~LPssLk 135 (426)
T PRK15386 69 VLPNELTEITIENCNNLTTLPGS---IPEGLEKLTVCH---CPEISGLPE-------SVRSLEIKGSATDSIKNVPNGLT 135 (426)
T ss_pred CCCCCCcEEEccCCCCcccCCch---hhhhhhheEccC---ccccccccc-------ccceEEeCCCCCcccccCcchHh
Confidence 4566788888875 444555543 135788888887 445555654 35666666553 455676665
Q ss_pred CC------------------CCCcEeecCCCCCCC-CcccCCCCCCCEEeecCC
Q 040933 255 LL------------------SNLRTLSLCYCKLLD-ISVTGELKKLEILCLRGS 289 (298)
Q Consensus 255 ~L------------------~~L~~L~l~~~~l~~-p~~i~~L~~L~~L~l~~~ 289 (298)
.| .+|++|++++|.... |..+. .+|++|+++.+
T Consensus 136 ~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i~LP~~LP--~SLk~L~ls~n 187 (426)
T PRK15386 136 SLSINSYNPENQARIDNLISPSLKTLSLTGCSNIILPEKLP--ESLQSITLHIE 187 (426)
T ss_pred heeccccccccccccccccCCcccEEEecCCCcccCccccc--ccCcEEEeccc
Confidence 54 267888888888555 65444 57888887664
No 49
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.10 E-value=1.1e-05 Score=75.53 Aligned_cols=103 Identities=21% Similarity=0.243 Sum_probs=62.7
Q ss_pred cCccEEEEeCCCCccCCCCcCCCCCCCcEEecccccccccccccChHHHhCCCCccEEEecCCCCCCCCccccCCCCCcE
Q 040933 182 KLYTSIVLRDIKTNVLPDRVLPECPQLKLFSVRADHQESSSLTIPNNFFEKMIQVRVINLTYMNLLPLPSSLGLLSNLRT 261 (298)
Q Consensus 182 ~~~~~l~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~l~~~~i~~lP~~i~~L~~L~~ 261 (298)
..+++|.+++|++...... ..+++|+.|+++. +.+..+|.-.-..++ |.+|.+++|.++++- .|.+|.+|+.
T Consensus 187 ~ale~LnLshNk~~~v~~L--r~l~~LkhLDlsy----N~L~~vp~l~~~gc~-L~~L~lrnN~l~tL~-gie~LksL~~ 258 (1096)
T KOG1859|consen 187 PALESLNLSHNKFTKVDNL--RRLPKLKHLDLSY----NCLRHVPQLSMVGCK-LQLLNLRNNALTTLR-GIENLKSLYG 258 (1096)
T ss_pred HHhhhhccchhhhhhhHHH--Hhccccccccccc----chhccccccchhhhh-heeeeecccHHHhhh-hHHhhhhhhc
Confidence 4566666777766665532 6666777777766 555555542212222 677777777666653 5666777777
Q ss_pred eecCCCCCCC---CcccCCCCCCCEEeecCCCCC
Q 040933 262 LSLCYCKLLD---ISVTGELKKLEILCLRGSDIQ 292 (298)
Q Consensus 262 L~l~~~~l~~---p~~i~~L~~L~~L~l~~~~l~ 292 (298)
||+++|-+.. ..-++.|..|+.|.|.||.+-
T Consensus 259 LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 259 LDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred cchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 7777766554 344556666667777766543
No 50
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=97.00 E-value=0.00022 Score=63.30 Aligned_cols=111 Identities=18% Similarity=0.153 Sum_probs=75.9
Q ss_pred ccCccEEEEeCCCCccCCCC-cCCCCCCCcEEecccccccccccccChHHHhCCCCccEEEecCC-CCCCCCccccCCCC
Q 040933 181 VKLYTSIVLRDIKTNVLPDR-VLPECPQLKLFSVRADHQESSSLTIPNNFFEKMIQVRVINLTYM-NLLPLPSSLGLLSN 258 (298)
Q Consensus 181 ~~~~~~l~l~~~~~~~l~~~-~~~~~~~L~~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~l~~~-~i~~lP~~i~~L~~ 258 (298)
.+.++.|.++.|.+.....+ ....+++++.|.+.+ |...+.--..+...+++|.+|+|++| .+..--.+..-+..
T Consensus 171 Lp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~---CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~ 247 (505)
T KOG3207|consen 171 LPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNS---CGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQT 247 (505)
T ss_pred cccchhcccccccccCCccccchhhhhhhheEEecc---CCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhH
Confidence 45666777777766544333 224567888888887 33332222233477899999999999 33322233445667
Q ss_pred CcEeecCCCCCCC-C--cccCCCCCCCEEeecCCCCCCC
Q 040933 259 LRTLSLCYCKLLD-I--SVTGELKKLEILCLRGSDIQQL 294 (298)
Q Consensus 259 L~~L~l~~~~l~~-p--~~i~~L~~L~~L~l~~~~l~~l 294 (298)
|+.|+|++|++-. + ..++.|+.|..|+++.|.+.++
T Consensus 248 L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si 286 (505)
T KOG3207|consen 248 LQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASI 286 (505)
T ss_pred HhhccccCCcccccccccccccccchhhhhccccCcchh
Confidence 9999999999666 5 6789999999999999987753
No 51
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.91 E-value=0.00088 Score=64.73 Aligned_cols=106 Identities=17% Similarity=0.243 Sum_probs=78.5
Q ss_pred hccCccEEEEeCCCCccCC-CCcCCCCCCCcEEecccccccccccccChHHHhCCCCccEEEecCCCCCCCC--ccccCC
Q 040933 180 AVKLYTSIVLRDIKTNVLP-DRVLPECPQLKLFSVRADHQESSSLTIPNNFFEKMIQVRVINLTYMNLLPLP--SSLGLL 256 (298)
Q Consensus 180 ~~~~~~~l~l~~~~~~~l~-~~~~~~~~~L~~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~l~~~~i~~lP--~~i~~L 256 (298)
..+.+++|.+.+-.+..-. .....+||+|++|++++ ..+..+ .++ +.+++|++|.+.+-.+..-+ ..+.+|
T Consensus 146 ~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~----TnI~nl-~GI-S~LknLq~L~mrnLe~e~~~~l~~LF~L 219 (699)
T KOG3665|consen 146 MLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISG----TNISNL-SGI-SRLKNLQVLSMRNLEFESYQDLIDLFNL 219 (699)
T ss_pred hCcccceEEecCceecchhHHHHhhccCccceeecCC----CCccCc-HHH-hccccHHHHhccCCCCCchhhHHHHhcc
Confidence 4578899988875553211 11347899999999998 566666 445 89999999999988877633 578899
Q ss_pred CCCcEeecCCCCCCC-C-------cccCCCCCCCEEeecCCCC
Q 040933 257 SNLRTLSLCYCKLLD-I-------SVTGELKKLEILCLRGSDI 291 (298)
Q Consensus 257 ~~L~~L~l~~~~l~~-p-------~~i~~L~~L~~L~l~~~~l 291 (298)
++|+.||+|...... + +.-.-|++|+.||.+++.+
T Consensus 220 ~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi 262 (699)
T KOG3665|consen 220 KKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDI 262 (699)
T ss_pred cCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcch
Confidence 999999999876443 4 2223489999999998754
No 52
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=96.88 E-value=0.00037 Score=60.23 Aligned_cols=90 Identities=16% Similarity=0.174 Sum_probs=41.8
Q ss_pred cCccEEEEeCCCCccCCCC----cCCCCCCCcEEecccccccccccccChHHHhCCCCccEEEecCCCCCC-----CCcc
Q 040933 182 KLYTSIVLRDIKTNVLPDR----VLPECPQLKLFSVRADHQESSSLTIPNNFFEKMIQVRVINLTYMNLLP-----LPSS 252 (298)
Q Consensus 182 ~~~~~l~l~~~~~~~l~~~----~~~~~~~L~~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~l~~~~i~~-----lP~~ 252 (298)
.++|.+..+.|.+..-+.. +|...+.|..+.+..+.-......+....|..+++|++|||..|.++. +...
T Consensus 157 ~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~Laka 236 (382)
T KOG1909|consen 157 PKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKA 236 (382)
T ss_pred cceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHH
Confidence 4455555555555433322 233445555555544110000011122224556666666666665543 3344
Q ss_pred ccCCCCCcEeecCCCCCCC
Q 040933 253 LGLLSNLRTLSLCYCKLLD 271 (298)
Q Consensus 253 i~~L~~L~~L~l~~~~l~~ 271 (298)
++.+++|+.|++++|.++.
T Consensus 237 L~s~~~L~El~l~dcll~~ 255 (382)
T KOG1909|consen 237 LSSWPHLRELNLGDCLLEN 255 (382)
T ss_pred hcccchheeeccccccccc
Confidence 4455566666666665554
No 53
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=96.79 E-value=4.2e-05 Score=71.93 Aligned_cols=105 Identities=15% Similarity=0.154 Sum_probs=81.4
Q ss_pred hccCccEEEEeCCCCccCCCCcCCCCCCCcEEecccccccccccccChHHHhCCCCccEEEecCCCCCCCCcc-ccCCCC
Q 040933 180 AVKLYTSIVLRDIKTNVLPDRVLPECPQLKLFSVRADHQESSSLTIPNNFFEKMIQVRVINLTYMNLLPLPSS-LGLLSN 258 (298)
Q Consensus 180 ~~~~~~~l~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~l~~~~i~~lP~~-i~~L~~ 258 (298)
.+.++..++...|.+..+..+ +.-++.++.|+++. +...... .+..++.|+.|||++|.+..+|.- ...+ +
T Consensus 162 ~Wn~L~~a~fsyN~L~~mD~S-Lqll~ale~LnLsh----Nk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc-~ 233 (1096)
T KOG1859|consen 162 VWNKLATASFSYNRLVLMDES-LQLLPALESLNLSH----NKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGC-K 233 (1096)
T ss_pred hhhhHhhhhcchhhHHhHHHH-HHHHHHhhhhccch----hhhhhhH--HHHhcccccccccccchhccccccchhhh-h
Confidence 455677778888887766554 35567899999988 5555544 358899999999999999988732 2222 4
Q ss_pred CcEeecCCCCCCCCcccCCCCCCCEEeecCCCCC
Q 040933 259 LRTLSLCYCKLLDISVTGELKKLEILCLRGSDIQ 292 (298)
Q Consensus 259 L~~L~l~~~~l~~p~~i~~L~~L~~L~l~~~~l~ 292 (298)
|+.|.+++|.++....|.+|.+|+.||++.|-|.
T Consensus 234 L~~L~lrnN~l~tL~gie~LksL~~LDlsyNll~ 267 (1096)
T KOG1859|consen 234 LQLLNLRNNALTTLRGIENLKSLYGLDLSYNLLS 267 (1096)
T ss_pred heeeeecccHHHhhhhHHhhhhhhccchhHhhhh
Confidence 9999999999999888999999999999998544
No 54
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.72 E-value=0.00045 Score=34.79 Aligned_cols=21 Identities=29% Similarity=0.433 Sum_probs=12.7
Q ss_pred CccEEEecCCCCCCCCccccC
Q 040933 235 QVRVINLTYMNLLPLPSSLGL 255 (298)
Q Consensus 235 ~Lr~L~l~~~~i~~lP~~i~~ 255 (298)
+|++|++++|+++.+|+++++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT
T ss_pred CccEEECCCCcCEeCChhhcC
Confidence 356666666666666655543
No 55
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.68 E-value=0.0031 Score=50.65 Aligned_cols=83 Identities=19% Similarity=0.292 Sum_probs=66.1
Q ss_pred CCCCcEEecccccccccccccChHHHhCCCCccEEEecCCCCCCCCccccC-CCCCcEeecCCCCCCC---CcccCCCCC
Q 040933 205 CPQLKLFSVRADHQESSSLTIPNNFFEKMIQVRVINLTYMNLLPLPSSLGL-LSNLRTLSLCYCKLLD---ISVTGELKK 280 (298)
Q Consensus 205 ~~~L~~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~l~~~~i~~lP~~i~~-L~~L~~L~l~~~~l~~---p~~i~~L~~ 280 (298)
..+...+++.+ +.+..++. |..++.|..|.+.+|+|+.+-+.+.. +++|..|.|.+|+|.. ...+..+++
T Consensus 41 ~d~~d~iDLtd----Ndl~~l~~--lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~ 114 (233)
T KOG1644|consen 41 LDQFDAIDLTD----NDLRKLDN--LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPK 114 (233)
T ss_pred ccccceecccc----cchhhccc--CCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCc
Confidence 44666778877 66666665 68999999999999999998656664 5569999999999877 556778889
Q ss_pred CCEEeecCCCCCC
Q 040933 281 LEILCLRGSDIQQ 293 (298)
Q Consensus 281 L~~L~l~~~~l~~ 293 (298)
|++|.+-+|.+..
T Consensus 115 L~~Ltll~Npv~~ 127 (233)
T KOG1644|consen 115 LEYLTLLGNPVEH 127 (233)
T ss_pred cceeeecCCchhc
Confidence 9999998886654
No 56
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=96.58 E-value=0.0013 Score=30.80 Aligned_cols=17 Identities=29% Similarity=0.475 Sum_probs=9.8
Q ss_pred CCCCEEeecCCCCCCCC
Q 040933 279 KKLEILCLRGSDIQQLP 295 (298)
Q Consensus 279 ~~L~~L~l~~~~l~~lP 295 (298)
++|+.|++++|+++++|
T Consensus 1 ~~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 1 PNLRTLDLSNNRLTSLP 17 (17)
T ss_dssp TT-SEEEETSS--SSE-
T ss_pred CccCEEECCCCCCCCCc
Confidence 36778888888877776
No 57
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.39 E-value=0.0021 Score=53.51 Aligned_cols=103 Identities=22% Similarity=0.232 Sum_probs=69.6
Q ss_pred hccCccEEEEeCCCCccCCCCcCCCCCCCcEEeccccccc--ccccccChHHHhCCCCccEEEecCCCCCC---CCcccc
Q 040933 180 AVKLYTSIVLRDIKTNVLPDRVLPECPQLKLFSVRADHQE--SSSLTIPNNFFEKMIQVRVINLTYMNLLP---LPSSLG 254 (298)
Q Consensus 180 ~~~~~~~l~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~--~~~~~lp~~~~~~l~~Lr~L~l~~~~i~~---lP~~i~ 254 (298)
....+..+++.+..+..+... ..+++|+.|.++. + .....++.-. ..+++|++|++++|+|+. ++ .+.
T Consensus 41 ~~~~le~ls~~n~gltt~~~~--P~Lp~LkkL~lsd---n~~~~~~~l~vl~-e~~P~l~~l~ls~Nki~~lstl~-pl~ 113 (260)
T KOG2739|consen 41 EFVELELLSVINVGLTTLTNF--PKLPKLKKLELSD---NYRRVSGGLEVLA-EKAPNLKVLNLSGNKIKDLSTLR-PLK 113 (260)
T ss_pred cccchhhhhhhccceeecccC--CCcchhhhhcccC---Ccccccccceehh-hhCCceeEEeecCCccccccccc-hhh
Confidence 345566667666666555554 7788999999988 3 2222333333 566999999999998764 32 456
Q ss_pred CCCCCcEeecCCCCCCC---C--cccCCCCCCCEEeecCC
Q 040933 255 LLSNLRTLSLCYCKLLD---I--SVTGELKKLEILCLRGS 289 (298)
Q Consensus 255 ~L~~L~~L~l~~~~l~~---p--~~i~~L~~L~~L~l~~~ 289 (298)
.+.+|..|++..|.... + ..+.-+++|.+||-...
T Consensus 114 ~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv 153 (260)
T KOG2739|consen 114 ELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDV 153 (260)
T ss_pred hhcchhhhhcccCCccccccHHHHHHHHhhhhcccccccc
Confidence 77788899999988554 2 34556788888875544
No 58
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.33 E-value=0.0024 Score=53.18 Aligned_cols=85 Identities=26% Similarity=0.291 Sum_probs=59.1
Q ss_pred CCCCCCcEEecccccccccccccChHHHhCCCCccEEEecCC--CCCC-CCccccCCCCCcEeecCCCCCCC---CcccC
Q 040933 203 PECPQLKLFSVRADHQESSSLTIPNNFFEKMIQVRVINLTYM--NLLP-LPSSLGLLSNLRTLSLCYCKLLD---ISVTG 276 (298)
Q Consensus 203 ~~~~~L~~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~l~~~--~i~~-lP~~i~~L~~L~~L~l~~~~l~~---p~~i~ 276 (298)
..+..|..|.+.+ .....+.. |..+++|+.|.++.| .+.. ++...-.+++|++|++++|+++. .....
T Consensus 40 d~~~~le~ls~~n----~gltt~~~--~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~ 113 (260)
T KOG2739|consen 40 DEFVELELLSVIN----VGLTTLTN--FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLK 113 (260)
T ss_pred ccccchhhhhhhc----cceeeccc--CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhh
Confidence 3344455444443 23333333 568889999999999 4443 66667777999999999999775 34566
Q ss_pred CCCCCCEEeecCCCCCC
Q 040933 277 ELKKLEILCLRGSDIQQ 293 (298)
Q Consensus 277 ~L~~L~~L~l~~~~l~~ 293 (298)
++.+|..|++..|....
T Consensus 114 ~l~nL~~Ldl~n~~~~~ 130 (260)
T KOG2739|consen 114 ELENLKSLDLFNCSVTN 130 (260)
T ss_pred hhcchhhhhcccCCccc
Confidence 77888899998885443
No 59
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.20 E-value=0.0016 Score=32.73 Aligned_cols=20 Identities=30% Similarity=0.182 Sum_probs=11.7
Q ss_pred CCcEeecCCCCCCC-CcccCC
Q 040933 258 NLRTLSLCYCKLLD-ISVTGE 277 (298)
Q Consensus 258 ~L~~L~l~~~~l~~-p~~i~~ 277 (298)
+|++|++++|+++. |+++++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT
T ss_pred CccEEECCCCcCEeCChhhcC
Confidence 35666666666656 555544
No 60
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=95.49 E-value=0.009 Score=27.88 Aligned_cols=16 Identities=31% Similarity=0.607 Sum_probs=6.9
Q ss_pred CccEEEecCCCCCCCC
Q 040933 235 QVRVINLTYMNLLPLP 250 (298)
Q Consensus 235 ~Lr~L~l~~~~i~~lP 250 (298)
+|+.|++++|+++++|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 4556666666555544
No 61
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=95.40 E-value=0.01 Score=31.02 Aligned_cols=20 Identities=30% Similarity=0.416 Sum_probs=15.1
Q ss_pred CCCCCEEeecCCCCCCCCCC
Q 040933 278 LKKLEILCLRGSDIQQLPVE 297 (298)
Q Consensus 278 L~~L~~L~l~~~~l~~lP~~ 297 (298)
|.+|++|++++|+|+.+|.+
T Consensus 1 L~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCCEEECCCCcCCcCCHH
Confidence 46778888888888888764
No 62
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=95.40 E-value=0.01 Score=31.02 Aligned_cols=20 Identities=30% Similarity=0.416 Sum_probs=15.1
Q ss_pred CCCCCEEeecCCCCCCCCCC
Q 040933 278 LKKLEILCLRGSDIQQLPVE 297 (298)
Q Consensus 278 L~~L~~L~l~~~~l~~lP~~ 297 (298)
|.+|++|++++|+|+.+|.+
T Consensus 1 L~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCCEEECCCCcCCcCCHH
Confidence 46778888888888888764
No 63
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.28 E-value=0.006 Score=52.02 Aligned_cols=87 Identities=22% Similarity=0.196 Sum_probs=56.4
Q ss_pred CCCCCCcEEeccccccccccc--ccChHHHhCCCCccEEEecCCCCCCCCccc-cCCCCCcEeecCCCCCCC---CcccC
Q 040933 203 PECPQLKLFSVRADHQESSSL--TIPNNFFEKMIQVRVINLTYMNLLPLPSSL-GLLSNLRTLSLCYCKLLD---ISVTG 276 (298)
Q Consensus 203 ~~~~~L~~L~l~~~~~~~~~~--~lp~~~~~~l~~Lr~L~l~~~~i~~lP~~i-~~L~~L~~L~l~~~~l~~---p~~i~ 276 (298)
..++.++.+++.++ .+. .--..++.+++.|++|+++.|.+..--.+. -.+.+|+.|-|.++.+.. -....
T Consensus 68 ~~~~~v~elDL~~N----~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~ 143 (418)
T KOG2982|consen 68 SSVTDVKELDLTGN----LISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLD 143 (418)
T ss_pred HHhhhhhhhhcccc----hhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhh
Confidence 33566777777762 221 112334588899999999988765421122 356688899888888655 45566
Q ss_pred CCCCCCEEeecCCCCCC
Q 040933 277 ELKKLEILCLRGSDIQQ 293 (298)
Q Consensus 277 ~L~~L~~L~l~~~~l~~ 293 (298)
.++.++.|.++.|+++.
T Consensus 144 ~lP~vtelHmS~N~~rq 160 (418)
T KOG2982|consen 144 DLPKVTELHMSDNSLRQ 160 (418)
T ss_pred cchhhhhhhhccchhhh
Confidence 77788888887775544
No 64
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=95.06 E-value=0.078 Score=39.50 Aligned_cols=103 Identities=16% Similarity=0.273 Sum_probs=58.7
Q ss_pred CccEEEEeCCCCccCCCCcCCCCCCCcEEecccccccccccccChHHHhCCCCccEEEecCCCCCCCC-ccccCCCCCcE
Q 040933 183 LYTSIVLRDIKTNVLPDRVLPECPQLKLFSVRADHQESSSLTIPNNFFEKMIQVRVINLTYMNLLPLP-SSLGLLSNLRT 261 (298)
Q Consensus 183 ~~~~l~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~l~~~~i~~lP-~~i~~L~~L~~ 261 (298)
+++.+.+.. .+..+....|..+++|+.+.+.. .+..++...|..++.|+.+.+.. .+..++ ..+..+.+|+.
T Consensus 13 ~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~-----~~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~ 85 (129)
T PF13306_consen 13 NLESITFPN-TIKKIGENAFSNCTSLKSINFPN-----NLTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKN 85 (129)
T ss_dssp T--EEEETS-T--EE-TTTTTT-TT-SEEEESS-----TTSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECE
T ss_pred CCCEEEECC-CeeEeChhhcccccccccccccc-----cccccceeeeecccccccccccc-cccccccccccccccccc
Confidence 566666653 67778888788888899888765 37777888888888899999976 555554 34556888888
Q ss_pred eecCCCCCCC--CcccCCCCCCCEEeecCCCCCCCC
Q 040933 262 LSLCYCKLLD--ISVTGELKKLEILCLRGSDIQQLP 295 (298)
Q Consensus 262 L~l~~~~l~~--p~~i~~L~~L~~L~l~~~~l~~lP 295 (298)
+.+..+ +.. ...+.+. +|+.+.+.. .+..++
T Consensus 86 i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~ 118 (129)
T PF13306_consen 86 IDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIE 118 (129)
T ss_dssp EEETTT--BEEHTTTTTT--T--EEE-TT-B-SS--
T ss_pred cccCcc-ccEEchhhhcCC-CceEEEECC-CccEEC
Confidence 888664 554 5566675 888888765 344444
No 65
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=94.81 E-value=0.018 Score=50.14 Aligned_cols=90 Identities=18% Similarity=0.210 Sum_probs=65.9
Q ss_pred CCCCCCcEEecccccccccccccChHHHhCCCCccEEEecCCCCCC-----CCccccCCCCCcEeecCCCCCCC------
Q 040933 203 PECPQLKLFSVRADHQESSSLTIPNNFFEKMIQVRVINLTYMNLLP-----LPSSLGLLSNLRTLSLCYCKLLD------ 271 (298)
Q Consensus 203 ~~~~~L~~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~l~~~~i~~-----lP~~i~~L~~L~~L~l~~~~l~~------ 271 (298)
..-++||++....+...+.........|...+.|+.+.++.|.|.. +-..+..++||+.|++++|.++.
T Consensus 154 ~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~L 233 (382)
T KOG1909|consen 154 ASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVAL 233 (382)
T ss_pred CCCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHH
Confidence 4557899998876322222222334457888999999999997753 34567789999999999998776
Q ss_pred CcccCCCCCCCEEeecCCCCC
Q 040933 272 ISVTGELKKLEILCLRGSDIQ 292 (298)
Q Consensus 272 p~~i~~L~~L~~L~l~~~~l~ 292 (298)
-..++.+++|+.|+++.|.++
T Consensus 234 akaL~s~~~L~El~l~dcll~ 254 (382)
T KOG1909|consen 234 AKALSSWPHLRELNLGDCLLE 254 (382)
T ss_pred HHHhcccchheeecccccccc
Confidence 145667789999999999765
No 66
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=94.73 E-value=0.052 Score=40.50 Aligned_cols=86 Identities=13% Similarity=0.221 Sum_probs=55.3
Q ss_pred CCCCcCCCCCCCcEEecccccccccccccChHHHhCCCCccEEEecCCCCCCCC-ccccCCCCCcEeecCCCCCCC--Cc
Q 040933 197 LPDRVLPECPQLKLFSVRADHQESSSLTIPNNFFEKMIQVRVINLTYMNLLPLP-SSLGLLSNLRTLSLCYCKLLD--IS 273 (298)
Q Consensus 197 l~~~~~~~~~~L~~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~l~~~~i~~lP-~~i~~L~~L~~L~l~~~~l~~--p~ 273 (298)
++..+|..+++|+.+.+.. ....++...|..+..|+.+.+..+ +..++ ..+..+..|+.+.+.. .+.. ..
T Consensus 3 i~~~~F~~~~~l~~i~~~~-----~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~ 75 (129)
T PF13306_consen 3 IGNNAFYNCSNLESITFPN-----TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDN 75 (129)
T ss_dssp E-TTTTTT-TT--EEEETS-----T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TT
T ss_pred ECHHHHhCCCCCCEEEECC-----CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccc
Confidence 4556678888999998764 466788888999999999999885 77765 3566777899999976 4444 45
Q ss_pred ccCCCCCCCEEeecCC
Q 040933 274 VTGELKKLEILCLRGS 289 (298)
Q Consensus 274 ~i~~L~~L~~L~l~~~ 289 (298)
.+....+|+.+++..+
T Consensus 76 ~F~~~~~l~~i~~~~~ 91 (129)
T PF13306_consen 76 AFSNCTNLKNIDIPSN 91 (129)
T ss_dssp TTTT-TTECEEEETTT
T ss_pred cccccccccccccCcc
Confidence 5667899999998654
No 67
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.59 E-value=0.0013 Score=55.47 Aligned_cols=96 Identities=17% Similarity=0.108 Sum_probs=63.3
Q ss_pred cCccEEEEeCCCCccCCCCcCCCCCCCcEEecccccccccccccChHHHhCCCCccEEEecCCCCCCCC--ccccCCCCC
Q 040933 182 KLYTSIVLRDIKTNVLPDRVLPECPQLKLFSVRADHQESSSLTIPNNFFEKMIQVRVINLTYMNLLPLP--SSLGLLSNL 259 (298)
Q Consensus 182 ~~~~~l~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~l~~~~i~~lP--~~i~~L~~L 259 (298)
.+++.|+..++.+..+.-. ..++.|.+|.++- +.+..+.+ |..++.|+.|.|..|.|..+- .-+.+|++|
T Consensus 19 ~~vkKLNcwg~~L~DIsic--~kMp~lEVLsLSv----NkIssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsL 90 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLDDISIC--EKMPLLEVLSLSV----NKISSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSL 90 (388)
T ss_pred HHhhhhcccCCCccHHHHH--HhcccceeEEeec----cccccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchh
Confidence 4566666667766666544 6677777777776 55555544 577777888888888777653 346677778
Q ss_pred cEeecCCCCCCC--Cc-----ccCCCCCCCEEe
Q 040933 260 RTLSLCYCKLLD--IS-----VTGELKKLEILC 285 (298)
Q Consensus 260 ~~L~l~~~~l~~--p~-----~i~~L~~L~~L~ 285 (298)
+.|.|..|+... +. .+.-|++|+.||
T Consensus 91 r~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 91 RTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 888888777333 32 345567777665
No 68
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.51 E-value=0.0019 Score=54.47 Aligned_cols=79 Identities=20% Similarity=0.201 Sum_probs=62.3
Q ss_pred CCCCcEEecccccccccccccChHHHhCCCCccEEEecCCCCCCCCccccCCCCCcEeecCCCCCCC---CcccCCCCCC
Q 040933 205 CPQLKLFSVRADHQESSSLTIPNNFFEKMIQVRVINLTYMNLLPLPSSLGLLSNLRTLSLCYCKLLD---ISVTGELKKL 281 (298)
Q Consensus 205 ~~~L~~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~l~~~~i~~lP~~i~~L~~L~~L~l~~~~l~~---p~~i~~L~~L 281 (298)
+.+.+.|.+-| +.+..| +++..|+.|.||.|+-|+|+++- .+..+++|+.|+|+-|.|.. ..=+.+|++|
T Consensus 18 l~~vkKLNcwg----~~L~DI--sic~kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRkN~I~sldEL~YLknlpsL 90 (388)
T KOG2123|consen 18 LENVKKLNCWG----CGLDDI--SICEKMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRKNCIESLDELEYLKNLPSL 90 (388)
T ss_pred HHHhhhhcccC----CCccHH--HHHHhcccceeEEeeccccccch-hHHHHHHHHHHHHHhcccccHHHHHHHhcCchh
Confidence 44556666555 444444 34689999999999999999984 68889999999999999887 3446788999
Q ss_pred CEEeecCCC
Q 040933 282 EILCLRGSD 290 (298)
Q Consensus 282 ~~L~l~~~~ 290 (298)
++|.|..|.
T Consensus 91 r~LWL~ENP 99 (388)
T KOG2123|consen 91 RTLWLDENP 99 (388)
T ss_pred hhHhhccCC
Confidence 999998763
No 69
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=94.39 E-value=0.0099 Score=50.76 Aligned_cols=59 Identities=17% Similarity=0.090 Sum_probs=46.9
Q ss_pred hCCCCccEEEecCC-CCCC-CCccccCCCCCcEeecCCCCCCC---CcccCCCCCCCEEeecCC
Q 040933 231 EKMIQVRVINLTYM-NLLP-LPSSLGLLSNLRTLSLCYCKLLD---ISVTGELKKLEILCLRGS 289 (298)
Q Consensus 231 ~~l~~Lr~L~l~~~-~i~~-lP~~i~~L~~L~~L~l~~~~l~~---p~~i~~L~~L~~L~l~~~ 289 (298)
..+++|..|||+.| .++. .-..+.++.-|++|.++.|+.-. .-.+...++|.+||+.||
T Consensus 310 ~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 310 RRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred HhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEeccc
Confidence 67889999999998 5554 44567788889999999998433 456788899999999887
No 70
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=93.81 E-value=0.0017 Score=53.37 Aligned_cols=83 Identities=6% Similarity=0.044 Sum_probs=45.9
Q ss_pred CCCCCCcEEecccccccccccccChHHHhCCCCccEEEecCCCCCCCCccccCCCCCcEeecCCCCCCC-CcccCCCCCC
Q 040933 203 PECPQLKLFSVRADHQESSSLTIPNNFFEKMIQVRVINLTYMNLLPLPSSLGLLSNLRTLSLCYCKLLD-ISVTGELKKL 281 (298)
Q Consensus 203 ~~~~~L~~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~l~~~~i~~lP~~i~~L~~L~~L~l~~~~l~~-p~~i~~L~~L 281 (298)
..+...+.|+++. +....+... |..+..|..|+++.+.+..+|.+.+.+..++.+++..|..+. |.++++++++
T Consensus 39 ~~~kr~tvld~~s----~r~vn~~~n-~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~ 113 (326)
T KOG0473|consen 39 ASFKRVTVLDLSS----NRLVNLGKN-FSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHP 113 (326)
T ss_pred hccceeeeehhhh----hHHHhhccc-hHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCc
Confidence 3444555555554 222222222 245555556666666666666666666666666666555555 6666666666
Q ss_pred CEEeecCCC
Q 040933 282 EILCLRGSD 290 (298)
Q Consensus 282 ~~L~l~~~~ 290 (298)
+++++.+|.
T Consensus 114 k~~e~k~~~ 122 (326)
T KOG0473|consen 114 KKNEQKKTE 122 (326)
T ss_pred chhhhccCc
Confidence 666665553
No 71
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=93.65 E-value=0.0098 Score=50.79 Aligned_cols=105 Identities=14% Similarity=0.119 Sum_probs=60.3
Q ss_pred CccEEEEeCCCCccCCCCcCCCCCCCcEEecccccccccccccC-hHHHhCCCCccEEEecCCCCCC-------------
Q 040933 183 LYTSIVLRDIKTNVLPDRVLPECPQLKLFSVRADHQESSSLTIP-NNFFEKMIQVRVINLTYMNLLP------------- 248 (298)
Q Consensus 183 ~~~~l~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~lp-~~~~~~l~~Lr~L~l~~~~i~~------------- 248 (298)
++..+++.++++..-.-..+.+-.+|+.|.+++ ++.+.... .-+|.+++.|..|+++.|.+..
T Consensus 211 kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm---~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~ 287 (419)
T KOG2120|consen 211 KLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSM---CSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISET 287 (419)
T ss_pred hhhhccccccccCcHHHHHHhccccceeecccc---ccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchh
Confidence 455555555554432222224445666666666 33333221 1234555555555555553211
Q ss_pred -----------------CCccccCCCCCcEeecCCCC-CCC--CcccCCCCCCCEEeecCCC
Q 040933 249 -----------------LPSSLGLLSNLRTLSLCYCK-LLD--ISVTGELKKLEILCLRGSD 290 (298)
Q Consensus 249 -----------------lP~~i~~L~~L~~L~l~~~~-l~~--p~~i~~L~~L~~L~l~~~~ 290 (298)
+.--...+++|..|||++|. ++. ...+.+++.|++|.++.|+
T Consensus 288 l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY 349 (419)
T KOG2120|consen 288 LTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCY 349 (419)
T ss_pred hhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhc
Confidence 11112357788899999987 665 5778899999999999984
No 72
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=92.48 E-value=0.11 Score=27.01 Aligned_cols=19 Identities=26% Similarity=0.440 Sum_probs=11.2
Q ss_pred CCccEEEecCCCCCCCCcc
Q 040933 234 IQVRVINLTYMNLLPLPSS 252 (298)
Q Consensus 234 ~~Lr~L~l~~~~i~~lP~~ 252 (298)
.+|++|+|++|.++.+|..
T Consensus 2 ~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCEEECCCCcCCcCCHH
Confidence 4556666666666666544
No 73
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=92.48 E-value=0.11 Score=27.01 Aligned_cols=19 Identities=26% Similarity=0.440 Sum_probs=11.2
Q ss_pred CCccEEEecCCCCCCCCcc
Q 040933 234 IQVRVINLTYMNLLPLPSS 252 (298)
Q Consensus 234 ~~Lr~L~l~~~~i~~lP~~ 252 (298)
.+|++|+|++|.++.+|..
T Consensus 2 ~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCEEECCCCcCCcCCHH
Confidence 4556666666666666544
No 74
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=90.88 E-value=0.16 Score=26.49 Aligned_cols=18 Identities=22% Similarity=0.385 Sum_probs=14.4
Q ss_pred CCCCEEeecCCCCCCCCC
Q 040933 279 KKLEILCLRGSDIQQLPV 296 (298)
Q Consensus 279 ~~L~~L~l~~~~l~~lP~ 296 (298)
++|+.|++++|++.+||.
T Consensus 2 ~~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLTSLPE 19 (26)
T ss_pred cccceeecCCCccccCcc
Confidence 467888888888888885
No 75
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.76 E-value=0.12 Score=44.27 Aligned_cols=61 Identities=28% Similarity=0.322 Sum_probs=47.6
Q ss_pred hCCCCccEEEecCCCCCCC---CccccCCCCCcEeecCCCCCCC-Cccc-CCCCCCCEEeecCCCC
Q 040933 231 EKMIQVRVINLTYMNLLPL---PSSLGLLSNLRTLSLCYCKLLD-ISVT-GELKKLEILCLRGSDI 291 (298)
Q Consensus 231 ~~l~~Lr~L~l~~~~i~~l---P~~i~~L~~L~~L~l~~~~l~~-p~~i-~~L~~L~~L~l~~~~l 291 (298)
.....++.|||.+|.|+.. -.-+.+|++|++|+++.|++.. ..+. ..+.+|++|-+.|+.+
T Consensus 68 ~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L 133 (418)
T KOG2982|consen 68 SSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGL 133 (418)
T ss_pred HHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCC
Confidence 5567899999999988763 3345589999999999999877 3444 3567999999988754
No 76
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.21 E-value=0.043 Score=44.26 Aligned_cols=59 Identities=24% Similarity=0.360 Sum_probs=33.5
Q ss_pred HhCCCCccEEEecCC-CCCCC-Ccccc-CCCCCcEeecCCCC-CCC--CcccCCCCCCCEEeecC
Q 040933 230 FEKMIQVRVINLTYM-NLLPL-PSSLG-LLSNLRTLSLCYCK-LLD--ISVTGELKKLEILCLRG 288 (298)
Q Consensus 230 ~~~l~~Lr~L~l~~~-~i~~l-P~~i~-~L~~L~~L~l~~~~-l~~--p~~i~~L~~L~~L~l~~ 288 (298)
+..++.++.|.+.+| .+..- -+-++ -.++|+.|++++|+ |++ ...+.++++|+.|.+.+
T Consensus 121 L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~ 185 (221)
T KOG3864|consen 121 LRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYD 185 (221)
T ss_pred HhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHHhcC
Confidence 455666666666666 33220 01111 33567777777776 666 56666777777666544
No 77
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=88.67 E-value=0.012 Score=48.44 Aligned_cols=85 Identities=11% Similarity=-0.000 Sum_probs=67.0
Q ss_pred ccCccEEEEeCCCCccCCCCcCCCCCCCcEEecccccccccccccChHHHhCCCCccEEEecCCCCCCCCccccCCCCCc
Q 040933 181 VKLYTSIVLRDIKTNVLPDRVLPECPQLKLFSVRADHQESSSLTIPNNFFEKMIQVRVINLTYMNLLPLPSSLGLLSNLR 260 (298)
Q Consensus 181 ~~~~~~l~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~l~~~~i~~lP~~i~~L~~L~ 260 (298)
.+.++.|.+..|+.-.+... |..+..+..|+++. +.+..+|.++ +....++.+++..|+.+.+|.+.+.+++++
T Consensus 41 ~kr~tvld~~s~r~vn~~~n-~s~~t~~~rl~~sk----nq~~~~~~d~-~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k 114 (326)
T KOG0473|consen 41 FKRVTVLDLSSNRLVNLGKN-FSILTRLVRLDLSK----NQIKFLPKDA-KQQRETVNAASHKNNHSQQPKSQKKEPHPK 114 (326)
T ss_pred cceeeeehhhhhHHHhhccc-hHHHHHHHHHhccH----hhHhhChhhH-HHHHHHHHHHhhccchhhCCccccccCCcc
Confidence 45667777777777666544 24455666777776 6777788876 889999999999999999999999999999
Q ss_pred EeecCCCCCCC
Q 040933 261 TLSLCYCKLLD 271 (298)
Q Consensus 261 ~L~l~~~~l~~ 271 (298)
|+++.++.+..
T Consensus 115 ~~e~k~~~~~~ 125 (326)
T KOG0473|consen 115 KNEQKKTEFFR 125 (326)
T ss_pred hhhhccCcchH
Confidence 99999987543
No 78
>PRK04841 transcriptional regulator MalT; Provisional
Probab=86.65 E-value=3.8 Score=41.46 Aligned_cols=119 Identities=10% Similarity=0.124 Sum_probs=71.3
Q ss_pred HHHHHHHHHcCCchhHHHHHHHHhcCCCHHHHHHHHHHhcCCCCCCCCCchhhhhhHHhh-hhcCCCCchhHHHHHHhcC
Q 040933 13 CVARDVAKECVGLPVSIVAVARALRSASIFKWKDALKQLRRPSSTNFKHIQPEAYKATAL-SYDKLEGEELKNLFLLIGY 91 (298)
Q Consensus 13 ~i~~~i~~~c~GlPLal~~~g~~L~~k~~~~W~~~~~~l~~~~~~~~~~~~~~~~~~l~~-sY~~L~~~~lk~cfl~~a~ 91 (298)
+...++.+.|+|.|+++..++..+....... ......+.... ...+.+.+.- .++.||++ .+..++..|+
T Consensus 206 ~~~~~l~~~t~Gwp~~l~l~~~~~~~~~~~~-~~~~~~~~~~~-------~~~~~~~l~~~v~~~l~~~-~~~~l~~~a~ 276 (903)
T PRK04841 206 AESSRLCDDVEGWATALQLIALSARQNNSSL-HDSARRLAGIN-------ASHLSDYLVEEVLDNVDLE-TRHFLLRCSV 276 (903)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCCch-hhhhHhhcCCC-------chhHHHHHHHHHHhcCCHH-HHHHHHHhcc
Confidence 3457899999999999999988775432100 11111111000 1223444333 47899999 8999999999
Q ss_pred -CCCCCHHHHHHHHhhcCCCCCcccHHHHHHHHHHHHHHHHhcCCcc-c--CC---ccchHHHHHHHHHHH
Q 040933 92 -AYVESIDELLRYGVGLGLFQGISKLDEARDRVSTLVYKLKASCMLL-D--EG---LPMHDVIRDVAISIV 155 (298)
Q Consensus 92 -p~~~~~~~li~~wia~g~i~~~~~~~~~~~~~~~~i~~L~~~~l~~-~--~~---~~mhdlv~~l~~~~~ 155 (298)
+ .++.+ +..... | ..++ .+.+..|.+.+++. . .+ |+.|++++++.....
T Consensus 277 ~~-~~~~~-l~~~l~--~-------~~~~----~~~L~~l~~~~l~~~~~~~~~~~yr~H~L~r~~l~~~l 332 (903)
T PRK04841 277 LR-SMNDA-LIVRVT--G-------EENG----QMRLEELERQGLFIQRMDDSGEWFRYHPLFASFLRHRC 332 (903)
T ss_pred cc-cCCHH-HHHHHc--C-------CCcH----HHHHHHHHHCCCeeEeecCCCCEEehhHHHHHHHHHHH
Confidence 5 33433 222111 1 1112 34577777788864 2 11 889999999987665
No 79
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=84.45 E-value=0.77 Score=23.97 Aligned_cols=17 Identities=35% Similarity=0.483 Sum_probs=10.6
Q ss_pred CCCCCEEeecCCCCCCC
Q 040933 278 LKKLEILCLRGSDIQQL 294 (298)
Q Consensus 278 L~~L~~L~l~~~~l~~l 294 (298)
|.+|+.|+++.|+|+.+
T Consensus 1 L~~L~~L~L~~NkI~~I 17 (26)
T smart00365 1 LTNLEELDLSQNKIKKI 17 (26)
T ss_pred CCccCEEECCCCcccee
Confidence 35667777777766544
No 80
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=76.94 E-value=1.4 Score=22.13 Aligned_cols=13 Identities=38% Similarity=0.462 Sum_probs=6.9
Q ss_pred CCCCEEeecCCCC
Q 040933 279 KKLEILCLRGSDI 291 (298)
Q Consensus 279 ~~L~~L~l~~~~l 291 (298)
++|++|+|++|+|
T Consensus 2 ~~L~~L~l~~n~i 14 (24)
T PF13516_consen 2 PNLETLDLSNNQI 14 (24)
T ss_dssp TT-SEEE-TSSBE
T ss_pred CCCCEEEccCCcC
Confidence 4666777766654
No 81
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=73.70 E-value=0.87 Score=36.94 Aligned_cols=57 Identities=25% Similarity=0.348 Sum_probs=36.1
Q ss_pred cEEEecCCCCCCC-CccccCCCCCcEeecCCCC-CCC--CcccCC-CCCCCEEeecCC-CCCC
Q 040933 237 RVINLTYMNLLPL-PSSLGLLSNLRTLSLCYCK-LLD--ISVTGE-LKKLEILCLRGS-DIQQ 293 (298)
Q Consensus 237 r~L~l~~~~i~~l-P~~i~~L~~L~~L~l~~~~-l~~--p~~i~~-L~~L~~L~l~~~-~l~~ 293 (298)
+.+|-+++.|... -..+..++.++.|.+.+|. +.. .+-++. .++|+.|+|++| +|++
T Consensus 104 eaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~ 166 (221)
T KOG3864|consen 104 EAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITD 166 (221)
T ss_pred EEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeech
Confidence 4444444444331 1345566677788888887 555 444444 469999999999 6764
No 82
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=72.43 E-value=1.9 Score=39.71 Aligned_cols=85 Identities=24% Similarity=0.306 Sum_probs=45.3
Q ss_pred CCCCCCcEEecccccccccccccC---hHHHhCCCCccEEEecCCC-CCCC-Ccccc-CCCCCcEeecCCCC-CCC--Cc
Q 040933 203 PECPQLKLFSVRADHQESSSLTIP---NNFFEKMIQVRVINLTYMN-LLPL-PSSLG-LLSNLRTLSLCYCK-LLD--IS 273 (298)
Q Consensus 203 ~~~~~L~~L~l~~~~~~~~~~~lp---~~~~~~l~~Lr~L~l~~~~-i~~l-P~~i~-~L~~L~~L~l~~~~-l~~--p~ 273 (298)
..+++|+.|.+.+.. ......+ ......++.|+.|+++++. ++.. -..+. .+++|++|.+.+|. ++. ..
T Consensus 211 ~~~~~L~~L~l~~~~--~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~ 288 (482)
T KOG1947|consen 211 LKCPNLEELDLSGCC--LLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLV 288 (482)
T ss_pred hhCchhheecccCcc--cccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHH
Confidence 556677777766410 0111111 1123455777777777775 4432 11222 25677777777776 554 22
Q ss_pred c-cCCCCCCCEEeecCC
Q 040933 274 V-TGELKKLEILCLRGS 289 (298)
Q Consensus 274 ~-i~~L~~L~~L~l~~~ 289 (298)
. ..++++|++|++++|
T Consensus 289 ~i~~~~~~L~~L~l~~c 305 (482)
T KOG1947|consen 289 SIAERCPSLRELDLSGC 305 (482)
T ss_pred HHHHhcCcccEEeeecC
Confidence 2 334566777777776
No 83
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=68.06 E-value=3.8 Score=35.08 Aligned_cols=41 Identities=24% Similarity=0.219 Sum_probs=22.7
Q ss_pred hCCCCccEEEecCCCCCC-----CCccccCCCCCcEeecCCCCCCC
Q 040933 231 EKMIQVRVINLTYMNLLP-----LPSSLGLLSNLRTLSLCYCKLLD 271 (298)
Q Consensus 231 ~~l~~Lr~L~l~~~~i~~-----lP~~i~~L~~L~~L~l~~~~l~~ 271 (298)
..+++|.+||+..|.++. +...++.+..|+.|++.+|-++.
T Consensus 211 ~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~ 256 (388)
T COG5238 211 FYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSN 256 (388)
T ss_pred HHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhcc
Confidence 345666666666665543 22334455556666666665544
No 84
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=65.24 E-value=10 Score=32.54 Aligned_cols=107 Identities=14% Similarity=0.125 Sum_probs=60.3
Q ss_pred cCccEEEEeCCCCcc-CCCC---cCCCCCCCcEEecccccccccccccCh-----HHH--------hCCCCccEEEecCC
Q 040933 182 KLYTSIVLRDIKTNV-LPDR---VLPECPQLKLFSVRADHQESSSLTIPN-----NFF--------EKMIQVRVINLTYM 244 (298)
Q Consensus 182 ~~~~~l~l~~~~~~~-l~~~---~~~~~~~L~~L~l~~~~~~~~~~~lp~-----~~~--------~~l~~Lr~L~l~~~ 244 (298)
..++.+.+++|.+.. .|+- .++....|.-|.++. +....+.. ..| .+-+.|++.+...|
T Consensus 92 p~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~N----nGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrN 167 (388)
T COG5238 92 PRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNN----NGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRN 167 (388)
T ss_pred CcceeeeccccccCcccchHHHHHHhcCCCceeEEeec----CCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccc
Confidence 356666777776632 1211 124455666676665 33332221 111 23467777777777
Q ss_pred CCCCCCcc-----ccCCCCCcEeecCCCCCCC--C-----cccCCCCCCCEEeecCCCCC
Q 040933 245 NLLPLPSS-----LGLLSNLRTLSLCYCKLLD--I-----SVTGELKKLEILCLRGSDIQ 292 (298)
Q Consensus 245 ~i~~lP~~-----i~~L~~L~~L~l~~~~l~~--p-----~~i~~L~~L~~L~l~~~~l~ 292 (298)
++..-|.. +..-.+|+.+.+..|.|.. . .....+++|+.||+..|-++
T Consensus 168 Rlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft 227 (388)
T COG5238 168 RLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFT 227 (388)
T ss_pred hhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchh
Confidence 77665432 2233467777777776653 1 24456788999999887543
No 85
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=64.80 E-value=5.6 Score=20.91 Aligned_cols=13 Identities=23% Similarity=0.268 Sum_probs=7.4
Q ss_pred CCCCEEeecCCCC
Q 040933 279 KKLEILCLRGSDI 291 (298)
Q Consensus 279 ~~L~~L~l~~~~l 291 (298)
++|++|+|++|.+
T Consensus 2 ~~L~~LdL~~N~i 14 (28)
T smart00368 2 PSLRELDLSNNKL 14 (28)
T ss_pred CccCEEECCCCCC
Confidence 3556666666554
No 86
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=63.92 E-value=5.8 Score=20.29 Aligned_cols=12 Identities=50% Similarity=0.805 Sum_probs=7.0
Q ss_pred CCCcEeecCCCC
Q 040933 257 SNLRTLSLCYCK 268 (298)
Q Consensus 257 ~~L~~L~l~~~~ 268 (298)
++|+.|++++|.
T Consensus 2 ~~L~~L~l~~C~ 13 (26)
T smart00367 2 PNLRELDLSGCT 13 (26)
T ss_pred CCCCEeCCCCCC
Confidence 356666666665
No 87
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=43.95 E-value=9 Score=34.78 Aligned_cols=59 Identities=25% Similarity=0.292 Sum_probs=37.1
Q ss_pred hCCCCccEEEecCC-CCCC-----CCccccCCCCCcEeecCCCC-CCC--CcccCCCCCCCEEeecCC
Q 040933 231 EKMIQVRVINLTYM-NLLP-----LPSSLGLLSNLRTLSLCYCK-LLD--ISVTGELKKLEILCLRGS 289 (298)
Q Consensus 231 ~~l~~Lr~L~l~~~-~i~~-----lP~~i~~L~~L~~L~l~~~~-l~~--p~~i~~L~~L~~L~l~~~ 289 (298)
.+++.||+|.++++ .++. +-..-+.+.+|..|.|++|+ +.. .....+.++|+.+++-+|
T Consensus 369 ~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~ 436 (483)
T KOG4341|consen 369 RNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDC 436 (483)
T ss_pred cCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeech
Confidence 45667777777766 3332 23444566777777777777 433 455556667777777666
No 88
>PF14050 Nudc_N: N-terminal conserved domain of Nudc.
Probab=40.99 E-value=58 Score=20.99 Aligned_cols=30 Identities=17% Similarity=0.266 Sum_probs=26.3
Q ss_pred chHHHHHHHHHHcCCchhHHHHHHHHhcCC
Q 040933 10 ELKCVARDVAKECVGLPVSIVAVARALRSA 39 (298)
Q Consensus 10 ~l~~i~~~i~~~c~GlPLal~~~g~~L~~k 39 (298)
.+..+--.|++.|+|++=-+.++-+.|+.|
T Consensus 2 ~~D~~ll~iaq~~~~I~~~Ld~fF~FL~Rk 31 (62)
T PF14050_consen 2 RFDNMLLSIAQQCGGIEDFLDTFFSFLRRK 31 (62)
T ss_pred cHHHHHHHHHHHcCCHHHHHHHHHHHHhcc
Confidence 355677789999999999999999999977
No 89
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=40.14 E-value=11 Score=34.79 Aligned_cols=63 Identities=21% Similarity=0.270 Sum_probs=36.4
Q ss_pred CCCCCCcEEecccccccccccccC-hHHHhCCCCccEEEecCCC-CCC--CCccccCCCCCcEeecCCCC
Q 040933 203 PECPQLKLFSVRADHQESSSLTIP-NNFFEKMIQVRVINLTYMN-LLP--LPSSLGLLSNLRTLSLCYCK 268 (298)
Q Consensus 203 ~~~~~L~~L~l~~~~~~~~~~~lp-~~~~~~l~~Lr~L~l~~~~-i~~--lP~~i~~L~~L~~L~l~~~~ 268 (298)
..+++|+.|.+.. +..+.... ..+...+++|+.|.+.++. ++. +-.-...+++|+.|++++|.
T Consensus 240 ~~~~~L~~l~l~~---~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~ 306 (482)
T KOG1947|consen 240 SICRKLKSLDLSG---CGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCH 306 (482)
T ss_pred hhcCCcCccchhh---hhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCc
Confidence 4557777777776 33222221 1121336788888876664 443 33334456678888888877
No 90
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=32.36 E-value=32 Score=31.40 Aligned_cols=85 Identities=22% Similarity=0.249 Sum_probs=52.8
Q ss_pred CCCCCCcEEecccccccccccccChH-HHhCCCCccEEEecCCCC-CC--CCccccCCCCCcEeecCCCC-CCCC-----
Q 040933 203 PECPQLKLFSVRADHQESSSLTIPNN-FFEKMIQVRVINLTYMNL-LP--LPSSLGLLSNLRTLSLCYCK-LLDI----- 272 (298)
Q Consensus 203 ~~~~~L~~L~l~~~~~~~~~~~lp~~-~~~~l~~Lr~L~l~~~~i-~~--lP~~i~~L~~L~~L~l~~~~-l~~p----- 272 (298)
....+|+++.+++ +......-.. +-.+.++|+-+++..+.. .. +-+---+.+.||.|.+++|. ++.-
T Consensus 317 ~~~~~L~~l~l~~---c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l 393 (483)
T KOG4341|consen 317 QHCHNLQVLELSG---CQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHL 393 (483)
T ss_pred cCCCceEEEeccc---cchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhh
Confidence 4567888888877 3433322211 125677888888888732 22 33233356778999999888 4432
Q ss_pred -cccCCCCCCCEEeecCCC
Q 040933 273 -SVTGELKKLEILCLRGSD 290 (298)
Q Consensus 273 -~~i~~L~~L~~L~l~~~~ 290 (298)
..-..+..|..|.+++|.
T Consensus 394 ~~~~c~~~~l~~lEL~n~p 412 (483)
T KOG4341|consen 394 SSSSCSLEGLEVLELDNCP 412 (483)
T ss_pred hhccccccccceeeecCCC
Confidence 233556778888888874
No 91
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=28.65 E-value=29 Score=32.74 Aligned_cols=78 Identities=17% Similarity=0.136 Sum_probs=46.4
Q ss_pred CCCCCCcEEecccccccccccccCh--HHHhCCCCccEEEecCC--CCCCCCccccCCC--CCcEeecCCCCCCC----C
Q 040933 203 PECPQLKLFSVRADHQESSSLTIPN--NFFEKMIQVRVINLTYM--NLLPLPSSLGLLS--NLRTLSLCYCKLLD----I 272 (298)
Q Consensus 203 ~~~~~L~~L~l~~~~~~~~~~~lp~--~~~~~l~~Lr~L~l~~~--~i~~lP~~i~~L~--~L~~L~l~~~~l~~----p 272 (298)
.+++.+.++.++. +.+..+.. ++-...++|..|+|++| .+...+ ++.++. .|+.|-+.||++.+ +
T Consensus 215 ~n~p~i~sl~lsn----NrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~-el~K~k~l~Leel~l~GNPlc~tf~~~ 289 (585)
T KOG3763|consen 215 ENFPEILSLSLSN----NRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSES-ELDKLKGLPLEELVLEGNPLCTTFSDR 289 (585)
T ss_pred cCCcceeeeeccc----chhhchhhhhHHHHhcchhheeecccchhhhcchh-hhhhhcCCCHHHeeecCCccccchhhh
Confidence 5566777777776 44433321 22356788999999998 444433 333333 37889999998655 2
Q ss_pred c-ccC----CCCCCCEEe
Q 040933 273 S-VTG----ELKKLEILC 285 (298)
Q Consensus 273 ~-~i~----~L~~L~~L~ 285 (298)
. -+. ..++|..||
T Consensus 290 s~yv~~i~~~FPKL~~LD 307 (585)
T KOG3763|consen 290 SEYVSAIRELFPKLLRLD 307 (585)
T ss_pred HHHHHHHHHhcchheeec
Confidence 1 122 456776665
No 92
>PF09675 Chlamy_scaf: Chlamydia-phage Chp2 scaffold (Chlamy_scaf); InterPro: IPR014131 Members of this entry are encoded by genes in chlamydiaphage such as Vp3. These viruses have around eight genes and infect obligately intracellular bacterial pathogens of the genus Chlamydia. This protein is annotated as VP3 or structural protein (as if a protein of mature viral particles), however, it is displaced from procapsids as DNA is packaged, and therefore is more correctly described as a scaffolding protein.
Probab=26.86 E-value=1.4e+02 Score=21.71 Aligned_cols=56 Identities=18% Similarity=0.254 Sum_probs=32.8
Q ss_pred HHHHHHcCCchhHHHHHHHHhc-C-C-CHHHHHHHHHHhcCCCCCCCCCchhhhhhHHhhhhcCCCCchhHHHHHH
Q 040933 16 RDVAKECVGLPVSIVAVARALR-S-A-SIFKWKDALKQLRRPSSTNFKHIQPEAYKATALSYDKLEGEELKNLFLL 88 (298)
Q Consensus 16 ~~i~~~c~GlPLal~~~g~~L~-~-k-~~~~W~~~~~~l~~~~~~~~~~~~~~~~~~l~~sY~~L~~~~lk~cfl~ 88 (298)
+.||++..+-+...-+=-+... + . +.-+...+++-+. --.-.||.||.+ +|.||--
T Consensus 2 ~~Ivkk~n~t~v~~hl~~r~~~Ygd~s~~~DyqeAln~V~----------------e~~eaFd~LPa~-iRe~F~N 60 (114)
T PF09675_consen 2 NKIVKKFNKTGVIAHLEQRQPEYGDCSSPFDYQEALNMVA----------------EANEAFDELPAH-IRERFNN 60 (114)
T ss_pred hHHHHHHccchHHHHHHhcCCcccccCCHHhHHHHHHHHH----------------HHHHHHHHchHH-HHHHhCC
Confidence 3578888888876655332222 1 1 3444444444311 112359999999 9999854
No 93
>PF12221 HflK_N: Bacterial membrane protein N terminal; InterPro: IPR020980 HflK is a bacterial membrane protein which is thought, together with the HflC protein, to form a membrane protease complex whose activity is modulated by the GTPase HflX []. This entry represents the N-terminal, membrane-spanning, region of of HflK responsible for anchoring the protein in the bacterial membrane. It is often found in association with PF01145 from PFAM.
Probab=22.49 E-value=1.1e+02 Score=17.99 Aligned_cols=21 Identities=19% Similarity=0.210 Sum_probs=17.3
Q ss_pred CCCCcchHHHHHHHHHHcCCc
Q 040933 5 YVEGSELKCVARDVAKECVGL 25 (298)
Q Consensus 5 ~~~~~~l~~i~~~i~~~c~Gl 25 (298)
...+++|.++-+++-++.+|+
T Consensus 17 ~~gPPDLdel~r~l~~kl~~~ 37 (42)
T PF12221_consen 17 NQGPPDLDELFRKLQDKLGGL 37 (42)
T ss_pred CCCCCCHHHHHHHHHHHHhcc
Confidence 455899999999999888775
No 94
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=22.36 E-value=5e+02 Score=22.23 Aligned_cols=22 Identities=23% Similarity=0.267 Sum_probs=15.2
Q ss_pred HHHHHHHHHcCCchhHHHHHHH
Q 040933 13 CVARDVAKECVGLPVSIVAVAR 34 (298)
Q Consensus 13 ~i~~~i~~~c~GlPLal~~~g~ 34 (298)
+....|++.|+|.|-.+..++.
T Consensus 182 ~al~~ia~~~~G~pR~~~~ll~ 203 (305)
T TIGR00635 182 EAALEIARRSRGTPRIANRLLR 203 (305)
T ss_pred HHHHHHHHHhCCCcchHHHHHH
Confidence 4556788889998866554444
No 95
>cd04440 DEP_2_P-Rex DEP (Dishevelled, Egl-10, and Pleckstrin) domain 2 found in P-Rex-like proteins. The P-Rex family is the guanine-nucleotide exchange factor (GEF) for the small GTPase Rac that contains an N-terminal RhoGEF domain, two DEP and PDZ domains. Rac-GEF activity is stimulated by phosphatidylinositol (3,4,5)-trisphosphate (PtdIns(3,4,5)P3), a lipid second messenger, and the G beta-gamma subunits of heterotrimeric G proteins. The DEP domains are not involved in mediating these stimuli, but may be of importance for basal and stimulated levels Rac-GEF activity.
Probab=20.41 E-value=2.2e+02 Score=20.04 Aligned_cols=36 Identities=14% Similarity=0.040 Sum_probs=26.3
Q ss_pred HHHHHHHHhhcCCCCCcccHHHHHHHHHHHHHHHHhcCCcccC
Q 040933 97 IDELLRYGVGLGLFQGISKLDEARDRVSTLVYKLKASCMLLDE 139 (298)
Q Consensus 97 ~~~li~~wia~g~i~~~~~~~~~~~~~~~~i~~L~~~~l~~~~ 139 (298)
=.++|.+.+..|-+ .+-++|..++..+++ .+++..+
T Consensus 40 GsElVdWLi~~g~~---~tR~eAv~~gq~Ll~----~gii~HV 75 (93)
T cd04440 40 ASKLVDWLLAQGDC---RTREEAVILGVGLCN----NGFMHHV 75 (93)
T ss_pred hhHHHHHHHHcCCC---CCHHHHHHHHHHHHh----CCCEEec
Confidence 46788888888865 366788887766655 7888754
Done!