Query 040933
Match_columns 298
No_of_seqs 228 out of 2699
Neff 9.7
Searched_HMMs 29240
Date Mon Mar 25 21:33:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040933.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040933hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 99.8 2.3E-22 8E-27 188.0 3.4 135 8-159 312-472 (549)
2 3sfz_A APAF-1, apoptotic pepti 99.7 1.2E-16 4E-21 162.3 10.9 137 8-158 303-452 (1249)
3 1vt4_I APAF-1 related killer D 99.5 1E-14 3.5E-19 141.4 8.7 105 21-151 322-436 (1221)
4 3e6j_A Variable lymphocyte rec 99.5 1.1E-13 3.7E-18 114.8 12.2 113 180-296 38-152 (229)
5 2v9t_B SLIT homolog 2 protein 99.5 2E-13 6.8E-18 112.5 11.7 114 180-297 30-146 (220)
6 1z6t_A APAF-1, apoptotic prote 99.5 1.1E-13 3.8E-18 130.4 10.6 131 10-154 305-448 (591)
7 2o6s_A Variable lymphocyte rec 99.5 5.1E-13 1.7E-17 108.9 12.6 112 181-296 27-141 (208)
8 3m19_A Variable lymphocyte rec 99.4 9.1E-13 3.1E-17 110.7 12.3 112 181-296 58-172 (251)
9 2v70_A SLIT-2, SLIT homolog 2 99.4 6.7E-13 2.3E-17 109.4 10.9 109 182-294 32-144 (220)
10 3e6j_A Variable lymphocyte rec 99.4 1E-12 3.5E-17 108.9 11.4 109 180-292 62-172 (229)
11 4g8a_A TOLL-like receptor 4; l 99.4 6.3E-13 2.2E-17 125.5 10.2 112 179-294 49-163 (635)
12 2o6q_A Variable lymphocyte rec 99.4 2.4E-12 8E-17 109.3 12.6 111 182-296 61-174 (270)
13 2o6q_A Variable lymphocyte rec 99.4 2.5E-12 8.7E-17 109.1 12.6 112 181-296 84-198 (270)
14 2ell_A Acidic leucine-rich nuc 99.4 1.7E-12 5.7E-17 102.2 10.4 113 179-297 46-165 (168)
15 2v70_A SLIT-2, SLIT homolog 2 99.4 1.9E-12 6.6E-17 106.5 11.2 110 179-292 54-166 (220)
16 3rfs_A Internalin B, repeat mo 99.4 4.9E-12 1.7E-16 107.4 14.0 113 180-296 83-198 (272)
17 2o6r_A Variable lymphocyte rec 99.4 6.5E-12 2.2E-16 99.6 13.2 111 179-293 25-138 (177)
18 3m19_A Variable lymphocyte rec 99.4 3.8E-12 1.3E-16 106.9 12.2 113 180-296 33-148 (251)
19 2r9u_A Variable lymphocyte rec 99.4 3.2E-12 1.1E-16 101.4 10.5 106 184-296 14-122 (174)
20 2xot_A Amphoterin-induced prot 99.4 1.6E-12 5.3E-17 115.2 9.2 109 183-295 65-179 (361)
21 3rfs_A Internalin B, repeat mo 99.4 8.5E-12 2.9E-16 106.0 13.2 118 174-297 55-175 (272)
22 1p9a_G Platelet glycoprotein I 99.3 6.7E-12 2.3E-16 107.7 12.3 113 180-297 75-190 (290)
23 1w8a_A SLIT protein; signaling 99.3 4.7E-12 1.6E-16 102.0 10.6 109 180-292 27-139 (192)
24 2v9t_B SLIT homolog 2 protein 99.3 4.3E-12 1.5E-16 104.5 10.5 108 180-291 54-164 (220)
25 2o6s_A Variable lymphocyte rec 99.3 1E-11 3.5E-16 101.1 12.3 109 180-292 50-161 (208)
26 2je0_A Acidic leucine-rich nuc 99.3 1.8E-12 6.1E-17 99.9 7.2 109 181-296 16-130 (149)
27 2xot_A Amphoterin-induced prot 99.3 4.4E-12 1.5E-16 112.3 9.9 115 179-297 36-154 (361)
28 2ell_A Acidic leucine-rich nuc 99.3 2.6E-12 8.8E-17 101.1 7.5 110 180-296 22-137 (168)
29 3vq2_A TLR4, TOLL-like recepto 99.3 9E-12 3.1E-16 117.5 12.4 109 180-292 30-141 (606)
30 4fcg_A Uncharacterized protein 99.3 2.8E-12 9.5E-17 112.1 8.2 113 179-297 101-224 (328)
31 2wfh_A SLIT homolog 2 protein 99.3 1.5E-11 5E-16 99.2 11.7 107 180-291 29-138 (193)
32 2wfh_A SLIT homolog 2 protein 99.3 5.8E-12 2E-16 101.6 9.3 105 185-297 13-120 (193)
33 4b8c_D Glucose-repressible alc 99.3 2E-12 6.8E-17 124.5 7.5 109 180-294 222-331 (727)
34 4g8a_A TOLL-like receptor 4; l 99.3 4.7E-12 1.6E-16 119.5 9.8 112 180-295 74-189 (635)
35 2o6r_A Variable lymphocyte rec 99.3 2.1E-11 7.2E-16 96.7 12.0 107 184-297 9-118 (177)
36 3g39_A Variable lymphocyte rec 99.3 1.2E-11 4.1E-16 97.6 10.3 105 184-295 11-118 (170)
37 1ozn_A Reticulon 4 receptor; N 99.3 1.4E-11 4.8E-16 105.2 11.5 112 182-296 56-170 (285)
38 1p9a_G Platelet glycoprotein I 99.3 1.3E-11 4.3E-16 106.0 10.8 110 181-297 54-166 (290)
39 1ozn_A Reticulon 4 receptor; N 99.3 1.1E-11 3.9E-16 105.8 10.4 111 181-295 104-217 (285)
40 1dce_A Protein (RAB geranylger 99.3 6.9E-12 2.3E-16 117.4 9.5 108 182-297 441-551 (567)
41 4fcg_A Uncharacterized protein 99.3 1.3E-11 4.6E-16 107.7 10.3 111 181-297 182-296 (328)
42 2z62_A TOLL-like receptor 4, v 99.3 1.3E-11 4.6E-16 104.8 9.5 108 183-294 53-164 (276)
43 2xwt_C Thyrotropin receptor; s 99.3 9.7E-12 3.3E-16 103.5 8.4 112 180-295 29-147 (239)
44 1w8a_A SLIT protein; signaling 99.3 1.8E-11 6.1E-16 98.5 9.5 104 185-295 11-118 (192)
45 1a9n_A U2A', U2A'; complex (nu 99.3 5.4E-12 1.9E-16 100.1 6.3 102 183-290 43-151 (176)
46 3o6n_A APL1; leucine-rich repe 99.3 2.4E-11 8.2E-16 108.5 10.9 112 180-295 67-181 (390)
47 2xwt_C Thyrotropin receptor; s 99.3 8.8E-12 3E-16 103.7 7.3 112 181-296 54-173 (239)
48 2z62_A TOLL-like receptor 4, v 99.3 1.9E-11 6.6E-16 103.8 9.6 109 181-293 27-138 (276)
49 3v47_A TOLL-like receptor 5B a 99.3 2.6E-11 9E-16 110.2 11.1 112 180-294 28-144 (455)
50 3oja_B Anopheles plasmodium-re 99.2 2.2E-11 7.6E-16 114.8 10.8 111 181-295 74-187 (597)
51 3j0a_A TOLL-like receptor 5; m 99.2 5.1E-11 1.7E-15 116.8 13.2 117 174-295 18-139 (844)
52 2z63_A TOLL-like receptor 4, v 99.2 3.7E-11 1.3E-15 112.3 11.6 108 181-292 27-137 (570)
53 2z80_A TOLL-like receptor 2, v 99.2 2.3E-11 7.8E-16 107.2 9.5 111 181-295 51-166 (353)
54 4b8c_D Glucose-repressible alc 99.2 1.2E-11 4.2E-16 119.0 8.3 97 197-298 215-312 (727)
55 1a9n_A U2A', U2A'; complex (nu 99.2 1.9E-11 6.5E-16 96.9 7.9 109 180-296 17-130 (176)
56 4ezg_A Putative uncharacterize 99.2 6.1E-11 2.1E-15 95.7 11.0 105 182-291 88-193 (197)
57 4ezg_A Putative uncharacterize 99.2 1.5E-10 5.3E-15 93.3 13.3 115 174-295 58-175 (197)
58 3zyj_A Leucine-rich repeat-con 99.2 3.7E-11 1.3E-15 109.1 10.2 112 181-296 135-272 (440)
59 3o6n_A APL1; leucine-rich repe 99.2 2E-11 6.8E-16 109.0 8.3 113 180-296 43-158 (390)
60 3vq2_A TLR4, TOLL-like recepto 99.2 3.1E-11 1.1E-15 113.7 10.1 113 180-296 54-170 (606)
61 1ziw_A TOLL-like receptor 3; i 99.2 4E-11 1.4E-15 114.6 10.6 112 180-295 23-137 (680)
62 2z63_A TOLL-like receptor 4, v 99.2 2.7E-11 9.2E-16 113.2 9.2 112 180-295 50-165 (570)
63 3v47_A TOLL-like receptor 5B a 99.2 5.2E-11 1.8E-15 108.2 10.6 107 182-292 299-408 (455)
64 2z81_A CD282 antigen, TOLL-lik 99.2 7E-11 2.4E-15 110.0 11.1 111 181-295 25-140 (549)
65 3zyi_A Leucine-rich repeat-con 99.2 4.9E-11 1.7E-15 108.6 9.8 113 181-296 146-283 (452)
66 2id5_A Lingo-1, leucine rich r 99.2 5.8E-11 2E-15 108.8 10.1 109 181-293 31-142 (477)
67 1ogq_A PGIP-2, polygalacturona 99.2 1.8E-11 6.2E-16 106.1 6.2 111 182-296 50-167 (313)
68 3t6q_A CD180 antigen; protein- 99.2 7.8E-11 2.7E-15 111.0 10.9 112 179-294 30-144 (606)
69 3zyi_A Leucine-rich repeat-con 99.2 6.5E-11 2.2E-15 107.8 9.9 104 181-288 74-180 (452)
70 1h6t_A Internalin B; cell adhe 99.2 1.9E-10 6.4E-15 98.7 12.2 106 180-295 88-194 (291)
71 2z80_A TOLL-like receptor 2, v 99.2 4.6E-11 1.6E-15 105.2 8.6 111 180-294 74-189 (353)
72 3zyj_A Leucine-rich repeat-con 99.2 1E-10 3.5E-15 106.2 10.7 105 180-288 62-169 (440)
73 1h6u_A Internalin H; cell adhe 99.2 2.2E-10 7.6E-15 99.0 12.4 104 182-295 85-189 (308)
74 1xku_A Decorin; proteoglycan, 99.2 1.5E-10 5.2E-15 100.9 11.3 110 180-296 169-280 (330)
75 4eco_A Uncharacterized protein 99.2 1.1E-10 3.9E-15 110.8 11.1 112 182-297 457-584 (636)
76 2id5_A Lingo-1, leucine rich r 99.2 8.6E-11 2.9E-15 107.6 9.9 111 181-295 55-168 (477)
77 2z66_A Variable lymphocyte rec 99.2 5.7E-11 1.9E-15 102.4 7.9 110 180-294 124-238 (306)
78 3a79_B TLR6, VLRB.59, TOLL-lik 99.2 1.3E-10 4.5E-15 108.7 10.9 108 180-293 50-160 (562)
79 3oja_B Anopheles plasmodium-re 99.1 5.3E-11 1.8E-15 112.2 7.9 113 180-296 49-164 (597)
80 2z7x_B TOLL-like receptor 1, v 99.1 7.5E-11 2.6E-15 109.2 8.7 106 181-292 20-128 (520)
81 4ecn_A Leucine-rich repeat pro 99.1 2.1E-10 7.1E-15 112.1 12.1 114 181-298 696-825 (876)
82 3o53_A Protein LRIM1, AGAP0063 99.1 4E-11 1.4E-15 104.1 6.3 111 182-297 120-232 (317)
83 1xeu_A Internalin C; cellular 99.1 1.7E-10 5.7E-15 97.5 9.8 111 174-294 55-165 (263)
84 2je0_A Acidic leucine-rich nuc 99.1 5.3E-11 1.8E-15 91.5 6.1 104 179-288 39-149 (149)
85 2z66_A Variable lymphocyte rec 99.1 1.3E-10 4.5E-15 100.1 9.1 111 179-294 25-141 (306)
86 1h6t_A Internalin B; cell adhe 99.1 3.7E-10 1.3E-14 96.9 11.7 105 181-294 67-171 (291)
87 4glp_A Monocyte differentiatio 99.1 6.5E-11 2.2E-15 102.4 6.9 113 181-295 144-288 (310)
88 1h6u_A Internalin H; cell adhe 99.1 4.6E-10 1.6E-14 97.0 12.1 107 180-295 105-211 (308)
89 1xku_A Decorin; proteoglycan, 99.1 3.5E-10 1.2E-14 98.5 11.5 111 182-296 52-188 (330)
90 2ft3_A Biglycan; proteoglycan, 99.1 3.4E-10 1.2E-14 98.8 11.3 106 181-292 53-160 (332)
91 3oja_A Leucine-rich immune mol 99.1 5.2E-11 1.8E-15 109.6 6.1 112 182-297 120-232 (487)
92 1ziw_A TOLL-like receptor 3; i 99.1 1.9E-10 6.5E-15 109.9 10.0 111 181-295 48-161 (680)
93 1wwl_A Monocyte differentiatio 99.1 3.6E-10 1.2E-14 97.8 9.4 113 182-297 149-271 (312)
94 1xeu_A Internalin C; cellular 99.1 6.9E-10 2.4E-14 93.7 11.0 108 178-295 81-188 (263)
95 1ogq_A PGIP-2, polygalacturona 99.1 9.4E-11 3.2E-15 101.6 5.7 109 180-292 74-187 (313)
96 1m9s_A Internalin B; cell inva 99.1 1E-09 3.5E-14 103.4 13.1 108 178-295 83-191 (605)
97 2r9u_A Variable lymphocyte rec 99.1 5.8E-10 2E-14 88.2 9.4 94 180-277 31-126 (174)
98 2ft3_A Biglycan; proteoglycan, 99.1 1.8E-10 6.1E-15 100.5 6.8 65 231-295 214-280 (332)
99 2z7x_B TOLL-like receptor 1, v 99.1 4.9E-10 1.7E-14 103.7 10.0 101 185-294 3-105 (520)
100 4fmz_A Internalin; leucine ric 99.0 1.9E-09 6.5E-14 94.4 12.9 110 176-294 60-170 (347)
101 2z81_A CD282 antigen, TOLL-lik 99.0 4.3E-10 1.5E-14 104.7 9.2 113 180-296 48-166 (549)
102 4ecn_A Leucine-rich repeat pro 99.0 2.3E-10 7.8E-15 111.8 7.5 61 235-296 549-612 (876)
103 4eco_A Uncharacterized protein 99.0 7.1E-10 2.4E-14 105.3 10.5 89 204-296 431-530 (636)
104 2ifg_A High affinity nerve gro 99.0 9.4E-10 3.2E-14 96.5 10.5 103 186-293 12-117 (347)
105 3t6q_A CD180 antigen; protein- 99.0 5.6E-10 1.9E-14 105.2 9.4 112 180-295 55-169 (606)
106 3a79_B TLR6, VLRB.59, TOLL-lik 99.0 6.9E-10 2.4E-14 103.8 9.9 103 184-295 33-137 (562)
107 1wwl_A Monocyte differentiatio 99.0 6.7E-10 2.3E-14 96.1 8.3 84 206-293 149-242 (312)
108 3g39_A Variable lymphocyte rec 99.0 1.6E-09 5.5E-14 85.3 9.2 88 180-271 28-116 (170)
109 1m9s_A Internalin B; cell inva 99.0 1.5E-09 5.2E-14 102.2 10.5 112 176-296 103-214 (605)
110 1dce_A Protein (RAB geranylger 99.0 8.7E-10 3E-14 103.2 8.6 84 207-297 442-528 (567)
111 1o6v_A Internalin A; bacterial 99.0 8.7E-10 3E-14 100.7 8.4 106 181-295 45-150 (466)
112 4glp_A Monocyte differentiatio 99.0 7.7E-10 2.6E-14 95.6 7.5 82 204-293 222-308 (310)
113 4fmz_A Internalin; leucine ric 99.0 2.5E-09 8.4E-14 93.7 10.5 107 179-295 41-149 (347)
114 3bz5_A Internalin-J, INLJ; leu 99.0 2.7E-09 9.1E-14 97.3 10.7 104 178-294 60-164 (457)
115 3rgz_A Protein brassinosteroid 99.0 1E-09 3.4E-14 106.5 8.3 109 183-295 443-555 (768)
116 3o53_A Protein LRIM1, AGAP0063 99.0 6.7E-10 2.3E-14 96.3 6.1 107 180-292 142-250 (317)
117 3j0a_A TOLL-like receptor 5; m 99.0 3E-09 1E-13 104.2 11.4 110 182-295 266-378 (844)
118 3rgz_A Protein brassinosteroid 98.9 1.5E-09 5.2E-14 105.2 8.8 111 182-296 418-532 (768)
119 3cvr_A Invasion plasmid antige 98.9 8.6E-09 2.9E-13 96.3 13.3 35 234-271 160-194 (571)
120 3cvr_A Invasion plasmid antige 98.9 6.7E-09 2.3E-13 97.0 11.8 97 181-292 139-243 (571)
121 3oja_A Leucine-rich immune mol 98.9 1.1E-09 3.6E-14 100.8 5.9 107 180-292 142-250 (487)
122 4ay9_X Follicle-stimulating ho 98.9 3.2E-09 1.1E-13 93.3 8.4 114 181-297 103-220 (350)
123 4ay9_X Follicle-stimulating ho 98.8 1E-08 3.6E-13 90.0 9.8 106 180-288 28-137 (350)
124 3g06_A SSPH2 (leucine-rich rep 98.8 1.8E-08 6.3E-13 95.1 11.9 113 162-296 45-158 (622)
125 1o6v_A Internalin A; bacterial 98.8 2E-08 6.8E-13 91.7 11.8 60 231-291 306-365 (466)
126 3g06_A SSPH2 (leucine-rich rep 98.8 4E-08 1.4E-12 92.8 14.1 103 180-297 79-199 (622)
127 2ifg_A High affinity nerve gro 98.8 5.6E-09 1.9E-13 91.5 7.9 83 210-297 12-98 (347)
128 3bz5_A Internalin-J, INLJ; leu 98.8 4.7E-08 1.6E-12 89.1 13.8 105 179-295 82-186 (457)
129 1jl5_A Outer protein YOPM; leu 98.8 2.3E-08 7.8E-13 91.1 11.6 101 182-296 111-212 (454)
130 1ds9_A Outer arm dynein; leuci 98.8 7.7E-11 2.6E-15 95.2 -4.3 104 180-291 46-152 (198)
131 1jl5_A Outer protein YOPM; leu 98.8 7.6E-08 2.6E-12 87.6 13.3 62 231-296 192-254 (454)
132 1ds9_A Outer arm dynein; leuci 98.7 5.6E-11 1.9E-15 96.0 -8.8 104 184-295 25-131 (198)
133 2ast_B S-phase kinase-associat 98.5 5.2E-08 1.8E-12 84.7 3.4 105 180-289 91-205 (336)
134 2ca6_A RAN GTPase-activating p 98.4 3.5E-08 1.2E-12 87.7 0.3 112 181-292 31-172 (386)
135 2ast_B S-phase kinase-associat 98.3 3.3E-08 1.1E-12 86.0 -1.5 108 181-292 117-236 (336)
136 3goz_A Leucine-rich repeat-con 98.3 1.2E-07 4E-12 83.7 0.9 107 183-293 52-181 (362)
137 2ca6_A RAN GTPase-activating p 98.3 8.4E-08 2.9E-12 85.3 -0.7 108 182-293 159-288 (386)
138 3goz_A Leucine-rich repeat-con 98.2 2.1E-07 7.3E-12 82.0 0.2 108 181-292 21-151 (362)
139 3sb4_A Hypothetical leucine ri 98.2 3.4E-06 1.2E-10 73.2 7.4 100 181-286 225-328 (329)
140 1z7x_W Ribonuclease inhibitor; 98.0 6.2E-07 2.1E-11 81.3 0.3 34 258-291 143-182 (461)
141 1z7x_W Ribonuclease inhibitor; 97.9 9.2E-07 3.1E-11 80.2 -0.6 109 180-293 26-156 (461)
142 3sb4_A Hypothetical leucine ri 97.9 1.7E-05 5.8E-10 68.8 6.3 87 205-297 225-315 (329)
143 3e4g_A ATP synthase subunit S, 97.9 5E-06 1.7E-10 65.1 2.6 84 206-293 61-154 (176)
144 3rw6_A Nuclear RNA export fact 97.9 1E-05 3.4E-10 68.0 4.5 77 204-285 168-257 (267)
145 3un9_A NLR family member X1; l 97.8 2.6E-06 9E-11 75.3 0.3 106 182-292 126-252 (372)
146 3rw6_A Nuclear RNA export fact 97.8 2E-05 6.7E-10 66.2 5.1 62 231-292 167-233 (267)
147 3ogk_B Coronatine-insensitive 97.8 4.7E-06 1.6E-10 78.0 0.9 112 181-293 402-527 (592)
148 3un9_A NLR family member X1; l 97.6 3.2E-06 1.1E-10 74.8 -2.3 107 182-292 101-224 (372)
149 4fdw_A Leucine rich hypothetic 97.6 0.00025 8.6E-09 63.2 8.9 111 182-296 248-362 (401)
150 2p1m_B Transport inhibitor res 97.4 6.5E-05 2.2E-09 70.1 2.5 85 203-291 429-518 (594)
151 3ogk_B Coronatine-insensitive 97.3 9.3E-05 3.2E-09 69.1 2.5 57 181-242 191-251 (592)
152 3e4g_A ATP synthase subunit S, 97.2 0.00026 9E-09 55.3 3.8 86 182-271 61-154 (176)
153 1io0_A Tropomodulin; LRR prote 97.2 0.00015 5.3E-09 57.3 2.4 105 181-291 35-163 (185)
154 2p1m_B Transport inhibitor res 97.2 5.2E-05 1.8E-09 70.8 -0.5 105 182-289 105-221 (594)
155 1io0_A Tropomodulin; LRR prote 97.1 3.4E-05 1.2E-09 61.1 -1.7 87 202-292 32-136 (185)
156 2ra8_A Uncharacterized protein 96.9 0.0011 3.7E-08 58.2 5.4 112 181-292 192-320 (362)
157 2ra8_A Uncharacterized protein 96.8 0.00014 4.8E-09 63.9 -0.6 107 180-292 170-292 (362)
158 4fdw_A Leucine rich hypothetic 96.8 0.0031 1.1E-07 56.1 7.5 98 183-288 136-235 (401)
159 3rfe_A Platelet glycoprotein I 96.7 0.0033 1.1E-07 46.5 5.9 48 220-270 18-68 (130)
160 4h09_A Hypothetical leucine ri 95.5 0.038 1.3E-06 48.3 8.1 98 183-287 241-341 (379)
161 3rfe_A Platelet glycoprotein I 95.1 0.041 1.4E-06 40.5 5.7 55 186-247 12-68 (130)
162 4gt6_A Cell surface protein; l 94.5 0.099 3.4E-06 46.0 7.7 87 196-289 278-367 (394)
163 4fs7_A Uncharacterized protein 93.7 0.1 3.5E-06 45.9 6.1 85 198-289 289-376 (394)
164 4gt6_A Cell surface protein; l 93.6 0.094 3.2E-06 46.1 5.8 99 183-289 289-388 (394)
165 4fs7_A Uncharacterized protein 92.2 0.14 4.8E-06 45.0 4.8 94 182-283 297-392 (394)
166 4h09_A Hypothetical leucine ri 91.8 0.58 2E-05 40.6 8.2 89 194-288 228-319 (379)
167 1pgv_A TMD-1, tropomodulin TMD 86.8 0.22 7.6E-06 39.3 1.5 102 182-289 41-167 (197)
168 1pgv_A TMD-1, tropomodulin TMD 81.7 0.64 2.2E-05 36.7 2.1 83 203-289 38-136 (197)
169 2qen_A Walker-type ATPase; unk 81.3 5.4 0.00018 33.6 8.0 115 13-150 226-347 (350)
170 2fna_A Conserved hypothetical 76.0 12 0.00042 31.4 8.7 113 16-150 233-355 (357)
171 2lz0_A Uncharacterized protein 61.2 11 0.00037 25.8 4.2 47 193-244 7-53 (100)
172 1hqc_A RUVB; extended AAA-ATPa 44.5 14 0.00049 30.7 3.1 24 13-36 191-214 (324)
173 2kz2_A Calmodulin, CAM; TR2C, 43.5 66 0.0023 21.0 7.8 80 23-104 9-91 (94)
174 2vda_B Maltoporin; sugar trans 40.7 15 0.0005 18.0 1.4 18 21-38 7-24 (28)
175 4h7y_A Dual specificity protei 29.3 14 0.00046 27.8 0.4 81 36-128 8-88 (161)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=99.84 E-value=2.3e-22 Score=187.98 Aligned_cols=135 Identities=14% Similarity=0.097 Sum_probs=100.8
Q ss_pred CcchHHHHHHHHHHcCCchhHHHHHHHHhcCCCHHHHHHHHHH-hcCCCCCCCCCchhhhhhHHhhhhcCCCCchhHHHH
Q 040933 8 GSELKCVARDVAKECVGLPVSIVAVARALRSASIFKWKDALKQ-LRRPSSTNFKHIQPEAYKATALSYDKLEGEELKNLF 86 (298)
Q Consensus 8 ~~~l~~i~~~i~~~c~GlPLal~~~g~~L~~k~~~~W~~~~~~-l~~~~~~~~~~~~~~~~~~l~~sY~~L~~~~lk~cf 86 (298)
++++++++++|+++|+|+||||+++|+.|+.++. +|...+.. +.... ...+..++.+||++||++ +|.||
T Consensus 312 ~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~~w-~~~~~l~~~l~~~~-------~~~i~~~l~~Sy~~L~~~-lk~~f 382 (549)
T 2a5y_B 312 GEKEEDVLNKTIELSSGNPATLMMFFKSCEPKTF-EKMAQLNNKLESRG-------LVGVECITPYSYKSLAMA-LQRCV 382 (549)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSSSH-HHHHHHHHHHHHHC-------SSTTCCCSSSSSSSHHHH-HHHHH
T ss_pred chhHHHHHHHHHHHhCCChHHHHHHHHHhccchH-HHHHHhHHHhhccc-------HHHHHHHHhcccccccHH-HHHHH
Confidence 4789999999999999999999999999987742 23222222 21111 234688999999999999 99999
Q ss_pred H-----------HhcC-C--CCCCHHHHHHHHhhc--CCCCCc---ccHHHHHHHHHHHHHHHHhcCCcccC---C---c
Q 040933 87 L-----------LIGY-A--YVESIDELLRYGVGL--GLFQGI---SKLDEARDRVSTLVYKLKASCMLLDE---G---L 141 (298)
Q Consensus 87 l-----------~~a~-p--~~~~~~~li~~wia~--g~i~~~---~~~~~~~~~~~~~i~~L~~~~l~~~~---~---~ 141 (298)
+ |||+ | +.++ +++|+|+ ||+... .+.+++. . ++++|+++||++.. + |
T Consensus 383 ~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~~~~~~~~~---~-~l~~L~~rsLl~~~~~~~~~~~ 454 (549)
T 2a5y_B 383 EVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICSNEEEQLDDEVA---D-RLKRLSKRGALLSGKRMPVLTF 454 (549)
T ss_dssp HTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC-------CCCTHHHH---H-HHHHTTTBSSCSEEECSSSCEE
T ss_pred hccchhhhhHhhheeeeCCCCeee----eeeeeeeccceeccCCCCCCHHHHH---H-HHHHHHHcCCeeEecCCCceEE
Confidence 9 9999 8 5566 8999999 999743 2344433 3 68889999999853 1 9
Q ss_pred cchHHHHHHHHHHHhhcC
Q 040933 142 PMHDVIRDVAISIVSAEK 159 (298)
Q Consensus 142 ~mhdlv~~l~~~~~~~~~ 159 (298)
+|||+||++|+.++.+++
T Consensus 455 ~mHdlv~~~a~~~~~~~~ 472 (549)
T 2a5y_B 455 KIDHIIHMFLKHVVDAQT 472 (549)
T ss_dssp ECCHHHHHHHHTTSCTHH
T ss_pred EeChHHHHHHHHHHHHHH
Confidence 999999999998877654
No 2
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.67 E-value=1.2e-16 Score=162.31 Aligned_cols=137 Identities=18% Similarity=0.228 Sum_probs=112.1
Q ss_pred CcchHHHHHHHHHHcCCchhHHHHHHHHhcCCCHHHHHHHHHHhcCCCCCCC----CCchhhhhhHHhhhhcCCCCchhH
Q 040933 8 GSELKCVARDVAKECVGLPVSIVAVARALRSASIFKWKDALKQLRRPSSTNF----KHIQPEAYKATALSYDKLEGEELK 83 (298)
Q Consensus 8 ~~~l~~i~~~i~~~c~GlPLal~~~g~~L~~k~~~~W~~~~~~l~~~~~~~~----~~~~~~~~~~l~~sY~~L~~~~lk 83 (298)
++++++++++|+++|+|+||||+++|++|+.+. ..|+..++.+.......+ ......+..++.+||+.||++ .|
T Consensus 303 ~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~-~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~~-~~ 380 (1249)
T 3sfz_A 303 KEDLPAEAHSIIKECKGSPLVVSLIGALLRDFP-NRWAYYLRQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLRED-IK 380 (1249)
T ss_dssp STTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS-SCHHHHHHHHHSCCCCCSSCTTCTTHHHHHHHHHHHHHTSCTT-TH
T ss_pred hhhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh-hHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhCCHH-HH
Confidence 456677899999999999999999999999765 479999998876654332 112356899999999999999 89
Q ss_pred HHHHHhcC-C--CCCCHHHHHHHHhhcCCCCCcccHHHHHHHHHHHHHHHHhcCCcccC---C---ccchHHHHHHHHHH
Q 040933 84 NLFLLIGY-A--YVESIDELLRYGVGLGLFQGISKLDEARDRVSTLVYKLKASCMLLDE---G---LPMHDVIRDVAISI 154 (298)
Q Consensus 84 ~cfl~~a~-p--~~~~~~~li~~wia~g~i~~~~~~~~~~~~~~~~i~~L~~~~l~~~~---~---~~mhdlv~~l~~~~ 154 (298)
.||+|||+ | +.++++.++.+|.+++ ++ +.+++++|+++||++.. + |+||+++|++++..
T Consensus 381 ~~~~~l~~f~~~~~i~~~~~~~~~~~~~--------~~----~~~~l~~L~~~sl~~~~~~~~~~~~~~h~l~~~~~~~~ 448 (1249)
T 3sfz_A 381 DYYTDLSILQKDVKVPTKVLCVLWDLET--------EE----VEDILQEFVNKSLLFCNRNGKSFCYYLHDLQVDFLTEK 448 (1249)
T ss_dssp HHHHHGGGSCTTCCEEHHHHHHHHTCCH--------HH----HHHHHHHHHHTTSCEEEESSSSEEEECCHHHHHHHHHH
T ss_pred HHHHHhCccCCCCeeCHHHHHHHhCCCH--------HH----HHHHHHHHHhccceEEecCCCceEEEecHHHHHHHHhh
Confidence 99999999 7 7899999999997652 23 44558888889999853 2 99999999999988
Q ss_pred Hhhc
Q 040933 155 VSAE 158 (298)
Q Consensus 155 ~~~~ 158 (298)
+.++
T Consensus 449 ~~~~ 452 (1249)
T 3sfz_A 449 NRSQ 452 (1249)
T ss_dssp TGGG
T ss_pred hhHH
Confidence 6654
No 3
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=99.54 E-value=1e-14 Score=141.43 Aligned_cols=105 Identities=13% Similarity=0.115 Sum_probs=89.3
Q ss_pred HcCCchhHHHHHHHHhcCC--CHHHHHHHHHHhcCCCCCCCCCchhhhhhHHhhhhcCCCCchh-HHHHHHhcC-C--CC
Q 040933 21 ECVGLPVSIVAVARALRSA--SIFKWKDALKQLRRPSSTNFKHIQPEAYKATALSYDKLEGEEL-KNLFLLIGY-A--YV 94 (298)
Q Consensus 21 ~c~GlPLal~~~g~~L~~k--~~~~W~~~~~~l~~~~~~~~~~~~~~~~~~l~~sY~~L~~~~l-k~cfl~~a~-p--~~ 94 (298)
.|+|+||||+++|+.|+++ +.++|+.. ....+..+|..||+.||++ . |.||+|||+ | +.
T Consensus 322 ICgGLPLALkLaGs~Lr~k~~s~eeW~~~--------------~~~~I~aaLelSYd~Lp~e-elK~cFL~LAIFPed~~ 386 (1221)
T 1vt4_I 322 VLTTNPRRLSIIAESIRDGLATWDNWKHV--------------NCDKLTTIIESSLNVLEPA-EYRKMFDRLSVFPPSAH 386 (1221)
T ss_dssp HCCCCHHHHHHHHHHHHHSCSSHHHHHHC--------------SCHHHHHHHHHHHHHSCTT-HHHHHHHHTTSSCTTSC
T ss_pred HhCCCHHHHHHHHHHHhCCCCCHHHHhcC--------------ChhHHHHHHHHHHHhCCHH-HHHHHHHHHhCCCCCCC
Confidence 3999999999999999977 78889753 1357899999999999999 8 999999999 7 78
Q ss_pred CCHHHHHHHHhhcCCCCCcccHHHHHHHHHHHHHHHHhcCCcccCC----ccchHHHHHHH
Q 040933 95 ESIDELLRYGVGLGLFQGISKLDEARDRVSTLVYKLKASCMLLDEG----LPMHDVIRDVA 151 (298)
Q Consensus 95 ~~~~~li~~wia~g~i~~~~~~~~~~~~~~~~i~~L~~~~l~~~~~----~~mhdlv~~l~ 151 (298)
+..+.++.+|+++|. ++ +..++++|+++||++..+ |+|||++++++
T Consensus 387 I~~elLa~LW~aeGe-------ed----Ae~~L~eLvdRSLLq~d~~~~rYrMHDLllELr 436 (1221)
T 1vt4_I 387 IPTILLSLIWFDVIK-------SD----VMVVVNKLHKYSLVEKQPKESTISIPSIYLELK 436 (1221)
T ss_dssp EEHHHHHHHHCSSCS-------HH----HHHHHHHHHTSSSSSBCSSSSEEBCCCHHHHHH
T ss_pred CCHHHHHHHhcCCCH-------HH----HHHHHHHHHhhCCEEEeCCCCEEEehHHHHHHh
Confidence 999999999998871 22 445688899999998652 99999999865
No 4
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.51 E-value=1.1e-13 Score=114.79 Aligned_cols=113 Identities=23% Similarity=0.313 Sum_probs=88.7
Q ss_pred hccCccEEEEeCCCCccCCCCcCCCCCCCcEEecccccccccccccChHHHhCCCCccEEEecCCCCCCCCcc-ccCCCC
Q 040933 180 AVKLYTSIVLRDIKTNVLPDRVLPECPQLKLFSVRADHQESSSLTIPNNFFEKMIQVRVINLTYMNLLPLPSS-LGLLSN 258 (298)
Q Consensus 180 ~~~~~~~l~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~l~~~~i~~lP~~-i~~L~~ 258 (298)
.+.+++.|.+.+|.+..+++..+..+++|+.|.+.+ +.+..+|...|..+++|++|++++|.++.+|.. ++.+.+
T Consensus 38 ~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~----N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~ 113 (229)
T 3e6j_A 38 IPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGS----NQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVH 113 (229)
T ss_dssp CCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS----SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred CCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCC----CCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchh
Confidence 346788888888888887666667788888888887 556777777778888888888888888887644 577888
Q ss_pred CcEeecCCCCCCC-CcccCCCCCCCEEeecCCCCCCCCC
Q 040933 259 LRTLSLCYCKLLD-ISVTGELKKLEILCLRGSDIQQLPV 296 (298)
Q Consensus 259 L~~L~l~~~~l~~-p~~i~~L~~L~~L~l~~~~l~~lP~ 296 (298)
|++|++++|.++. |..++.+++|++|++++|++..+|.
T Consensus 114 L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~ 152 (229)
T 3e6j_A 114 LKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPH 152 (229)
T ss_dssp CCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCT
T ss_pred hCeEeccCCcccccCcccccCCCCCEEECCCCcCCccCH
Confidence 8888888888878 7788888888888888888877774
No 5
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.49 E-value=2e-13 Score=112.51 Aligned_cols=114 Identities=18% Similarity=0.234 Sum_probs=95.8
Q ss_pred hccCccEEEEeCCCCccCCCCcCCCCCCCcEEecccccccccccccChHHHhCCCCccEEEecCCCCCCCCcc-ccCCCC
Q 040933 180 AVKLYTSIVLRDIKTNVLPDRVLPECPQLKLFSVRADHQESSSLTIPNNFFEKMIQVRVINLTYMNLLPLPSS-LGLLSN 258 (298)
Q Consensus 180 ~~~~~~~l~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~l~~~~i~~lP~~-i~~L~~ 258 (298)
.+..++.|.+.+|.+..++...|..+++|+.|.+++ +.+..+++..|..+++|++|+|++|.++.+|.. +..+.+
T Consensus 30 l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~----N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~ 105 (220)
T 2v9t_B 30 LPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSN----NQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFS 105 (220)
T ss_dssp CCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCS----SCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred cCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCC----CcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCC
Confidence 346789999999999988887778899999999987 566667555568999999999999999998765 578999
Q ss_pred CcEeecCCCCCCC--CcccCCCCCCCEEeecCCCCCCCCCC
Q 040933 259 LRTLSLCYCKLLD--ISVTGELKKLEILCLRGSDIQQLPVE 297 (298)
Q Consensus 259 L~~L~l~~~~l~~--p~~i~~L~~L~~L~l~~~~l~~lP~~ 297 (298)
|++|++++|.++. |..++.+++|++|++++|++..+|..
T Consensus 106 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 146 (220)
T 2v9t_B 106 LQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKG 146 (220)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred CCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHH
Confidence 9999999999888 67788999999999999988887753
No 6
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=99.48 E-value=1.1e-13 Score=130.35 Aligned_cols=131 Identities=19% Similarity=0.243 Sum_probs=104.8
Q ss_pred chHHHHHHHHHHcCCchhHHHHHHHHhcCCCHHHHHHHHHHhcCCCCCCC----CCchhhhhhHHhhhhcCCCCchhHHH
Q 040933 10 ELKCVARDVAKECVGLPVSIVAVARALRSASIFKWKDALKQLRRPSSTNF----KHIQPEAYKATALSYDKLEGEELKNL 85 (298)
Q Consensus 10 ~l~~i~~~i~~~c~GlPLal~~~g~~L~~k~~~~W~~~~~~l~~~~~~~~----~~~~~~~~~~l~~sY~~L~~~~lk~c 85 (298)
...+.+.+|+++|+|+||||+.+|+.|+.+. ..|+..++.+.......+ ......+..++..||+.||++ .|.|
T Consensus 305 ~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~-~~w~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~~-~~~~ 382 (591)
T 1z6t_A 305 DLPEQAHSIIKECKGSPLVVSLIGALLRDFP-NRWEYYLKQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLRED-IKDY 382 (591)
T ss_dssp GSCTHHHHHHHHHTTCHHHHHHHHHHHHHST-TCHHHHHHHHHSCCCCCSSCCCSSCCHHHHHHHHHHHHTSCTT-THHH
T ss_pred cccHHHHHHHHHhCCCcHHHHHHHHHHhcCc-hhHHHHHHHHHHhHHHHhhhccccchHHHHHHHHHHHHhCCHH-HHHH
Confidence 4456889999999999999999999998663 379988888876543322 112357899999999999999 8999
Q ss_pred HHHhcC-C--CCCCHHHHHHHHhhcCCCCCcccHHHHHHHHHHHHHHHHhcCCcccC---C---ccchHHHHHHHHHH
Q 040933 86 FLLIGY-A--YVESIDELLRYGVGLGLFQGISKLDEARDRVSTLVYKLKASCMLLDE---G---LPMHDVIRDVAISI 154 (298)
Q Consensus 86 fl~~a~-p--~~~~~~~li~~wia~g~i~~~~~~~~~~~~~~~~i~~L~~~~l~~~~---~---~~mhdlv~~l~~~~ 154 (298)
|+++|+ | +.++.+.++.+|.++ .++ +..+++.|+++||++.. + |+||+++++++...
T Consensus 383 l~~la~f~~~~~i~~~~l~~l~~~~--------~~~----~~~~l~~L~~~~Ll~~~~~~~~~~~~~H~lv~~~~~~~ 448 (591)
T 1z6t_A 383 YTDLSILQKDVKVPTKVLCILWDME--------TEE----VEDILQEFVNKSLLFCDRNGKSFRYYLHDLQVDFLTEK 448 (591)
T ss_dssp HHHGGGCCTTCCEEHHHHHHHHTCC--------HHH----HHHHHHHHHHTTSSEEEEETTEEEEECCHHHHHHHHHH
T ss_pred HHHccccCCCCccCHHHHHHHhccC--------HHH----HHHHHHHHHhCcCeEEecCCCccEEEEcHHHHHHHHhh
Confidence 999999 7 679999999999653 122 34568888889999732 1 99999999999877
No 7
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.47 E-value=5.1e-13 Score=108.89 Aligned_cols=112 Identities=24% Similarity=0.343 Sum_probs=78.5
Q ss_pred ccCccEEEEeCCCCccCCCCcCCCCCCCcEEecccccccccccccChHHHhCCCCccEEEecCCCCCCCCcc-ccCCCCC
Q 040933 181 VKLYTSIVLRDIKTNVLPDRVLPECPQLKLFSVRADHQESSSLTIPNNFFEKMIQVRVINLTYMNLLPLPSS-LGLLSNL 259 (298)
Q Consensus 181 ~~~~~~l~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~l~~~~i~~lP~~-i~~L~~L 259 (298)
+.+++.+.+.+|.+..++...+..+++|+.|.+.+ +.+..+|...|..+++|++|++++|.++.+|.. ++.+.+|
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~----n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 102 (208)
T 2o6s_A 27 PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGG----NKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQL 102 (208)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCS----SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred CCCCcEEEcCCCccCcCChhhhcccccCcEEECCC----CccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCC
Confidence 45677777777777777766566777777777776 455666666667777777777777777776543 5677777
Q ss_pred cEeecCCCCCCC-Cc-ccCCCCCCCEEeecCCCCCCCCC
Q 040933 260 RTLSLCYCKLLD-IS-VTGELKKLEILCLRGSDIQQLPV 296 (298)
Q Consensus 260 ~~L~l~~~~l~~-p~-~i~~L~~L~~L~l~~~~l~~lP~ 296 (298)
++|++++|.+.. |. .++++++|++|++++|++..+|.
T Consensus 103 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 141 (208)
T 2o6s_A 103 KELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPD 141 (208)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred CEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCH
Confidence 777777777766 43 46677777777777777766664
No 8
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.44 E-value=9.1e-13 Score=110.65 Aligned_cols=112 Identities=21% Similarity=0.301 Sum_probs=69.2
Q ss_pred ccCccEEEEeCCCCccCCCCcCCCCCCCcEEecccccccccccccChHHHhCCCCccEEEecCCCCCCCCcc-ccCCCCC
Q 040933 181 VKLYTSIVLRDIKTNVLPDRVLPECPQLKLFSVRADHQESSSLTIPNNFFEKMIQVRVINLTYMNLLPLPSS-LGLLSNL 259 (298)
Q Consensus 181 ~~~~~~l~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~l~~~~i~~lP~~-i~~L~~L 259 (298)
..+++.|.+.+|.+..++...+..+++|+.|.+.+ +.+..+|...|..+++|++|++++|.++.+|.. ++.+.+|
T Consensus 58 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~----n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 133 (251)
T 3m19_A 58 LTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLAN----NQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKL 133 (251)
T ss_dssp CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT----SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred cccCCEEECCCCcCCccCHhHhccCCcCCEEECCC----CcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcc
Confidence 34566666666666666555556666666666665 445555555556666666666666666666543 4566666
Q ss_pred cEeecCCCCCCC-Cc-ccCCCCCCCEEeecCCCCCCCCC
Q 040933 260 RTLSLCYCKLLD-IS-VTGELKKLEILCLRGSDIQQLPV 296 (298)
Q Consensus 260 ~~L~l~~~~l~~-p~-~i~~L~~L~~L~l~~~~l~~lP~ 296 (298)
++|++++|.++. |. .++.+++|++|++++|++..+|.
T Consensus 134 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 172 (251)
T 3m19_A 134 KELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPH 172 (251)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred cEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCH
Confidence 666666666666 33 46666666666666666666554
No 9
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.43 E-value=6.7e-13 Score=109.35 Aligned_cols=109 Identities=21% Similarity=0.210 Sum_probs=63.8
Q ss_pred cCccEEEEeCCCCccCC-CCcCCCCCCCcEEecccccccccccccChHHHhCCCCccEEEecCCCCCCCCc-cccCCCCC
Q 040933 182 KLYTSIVLRDIKTNVLP-DRVLPECPQLKLFSVRADHQESSSLTIPNNFFEKMIQVRVINLTYMNLLPLPS-SLGLLSNL 259 (298)
Q Consensus 182 ~~~~~l~l~~~~~~~l~-~~~~~~~~~L~~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~l~~~~i~~lP~-~i~~L~~L 259 (298)
..++.|.+.+|.+..++ ..++..+++|+.|.+.+ +.+..++...|..+++|++|++++|.++.+|. .++.+.+|
T Consensus 32 ~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~----N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 107 (220)
T 2v70_A 32 QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSN----NKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESL 107 (220)
T ss_dssp TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCS----SCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSC
T ss_pred CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCC----CcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCC
Confidence 44556666666666553 23345566666666665 44555555445666666666666666666543 35566666
Q ss_pred cEeecCCCCCCC--CcccCCCCCCCEEeecCCCCCCC
Q 040933 260 RTLSLCYCKLLD--ISVTGELKKLEILCLRGSDIQQL 294 (298)
Q Consensus 260 ~~L~l~~~~l~~--p~~i~~L~~L~~L~l~~~~l~~l 294 (298)
++|++++|.++. |..++.+++|++|++++|++..+
T Consensus 108 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 144 (220)
T 2v70_A 108 KTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTV 144 (220)
T ss_dssp CEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCB
T ss_pred CEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEE
Confidence 666666666555 45566666666666666665555
No 10
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.42 E-value=1e-12 Score=108.87 Aligned_cols=109 Identities=18% Similarity=0.287 Sum_probs=100.3
Q ss_pred hccCccEEEEeCCCCccCCCCcCCCCCCCcEEecccccccccccccChHHHhCCCCccEEEecCCCCCCCCccccCCCCC
Q 040933 180 AVKLYTSIVLRDIKTNVLPDRVLPECPQLKLFSVRADHQESSSLTIPNNFFEKMIQVRVINLTYMNLLPLPSSLGLLSNL 259 (298)
Q Consensus 180 ~~~~~~~l~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~l~~~~i~~lP~~i~~L~~L 259 (298)
...+++.|.+.+|.+..++...|..+++|+.|.+++ +.+..+|...|..+++|++|++++|.++.+|..++.+.+|
T Consensus 62 ~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~----N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L 137 (229)
T 3e6j_A 62 SLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT----NQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHL 137 (229)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS----SCCCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTC
T ss_pred CccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC----CcCCccChhHhCcchhhCeEeccCCcccccCcccccCCCC
Confidence 457899999999999999988788999999999998 6788888888899999999999999999999999999999
Q ss_pred cEeecCCCCCCC-C-cccCCCCCCCEEeecCCCCC
Q 040933 260 RTLSLCYCKLLD-I-SVTGELKKLEILCLRGSDIQ 292 (298)
Q Consensus 260 ~~L~l~~~~l~~-p-~~i~~L~~L~~L~l~~~~l~ 292 (298)
++|++++|.+.. | ..+..+++|++|++++|.+.
T Consensus 138 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 138 THLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp SEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred CEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence 999999999998 5 56899999999999999765
No 11
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.40 E-value=6.3e-13 Score=125.53 Aligned_cols=112 Identities=20% Similarity=0.161 Sum_probs=94.4
Q ss_pred hhccCccEEEEeCCCCccCCCCcCCCCCCCcEEecccccccccccccChHHHhCCCCccEEEecCCCCCCCCc-cccCCC
Q 040933 179 NAVKLYTSIVLRDIKTNVLPDRVLPECPQLKLFSVRADHQESSSLTIPNNFFEKMIQVRVINLTYMNLLPLPS-SLGLLS 257 (298)
Q Consensus 179 ~~~~~~~~l~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~l~~~~i~~lP~-~i~~L~ 257 (298)
..+..++.|.+++|.++.+++..|..+++|++|++++ +.+..+|++.|..+++|++|+|++|+++.+|. .++.|.
T Consensus 49 ~lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~----N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~ 124 (635)
T 4g8a_A 49 NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSR----CEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLS 124 (635)
T ss_dssp SSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTT----CCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCT
T ss_pred CCCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCC----CcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCC
Confidence 3467889999999999999887788899999999987 67788888778889999999999999888874 578899
Q ss_pred CCcEeecCCCCCCC-C-cccCCCCCCCEEeecCCCCCCC
Q 040933 258 NLRTLSLCYCKLLD-I-SVTGELKKLEILCLRGSDIQQL 294 (298)
Q Consensus 258 ~L~~L~l~~~~l~~-p-~~i~~L~~L~~L~l~~~~l~~l 294 (298)
+|++|++++|.++. | ..++++++|++|++++|++..+
T Consensus 125 ~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~ 163 (635)
T 4g8a_A 125 SLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSF 163 (635)
T ss_dssp TCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCC
T ss_pred CCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccC
Confidence 99999999998888 4 4688889999999988887654
No 12
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.40 E-value=2.4e-12 Score=109.31 Aligned_cols=111 Identities=24% Similarity=0.365 Sum_probs=64.5
Q ss_pred cCccEEEEeCCCCccCCCCcCCCCCCCcEEecccccccccccccChHHHhCCCCccEEEecCCCCCCCC-ccccCCCCCc
Q 040933 182 KLYTSIVLRDIKTNVLPDRVLPECPQLKLFSVRADHQESSSLTIPNNFFEKMIQVRVINLTYMNLLPLP-SSLGLLSNLR 260 (298)
Q Consensus 182 ~~~~~l~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~l~~~~i~~lP-~~i~~L~~L~ 260 (298)
.+++.|.+.+|.+..++..+|..+++|++|.+.+ +.+..+|...|..+++|++|++++|.++.+| ..++.+++|+
T Consensus 61 ~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~----n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 136 (270)
T 2o6q_A 61 TKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTD----NKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLT 136 (270)
T ss_dssp TTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCS----SCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred CCCCEEECCCCccCeeChhhhcCCCCCCEEECCC----CcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCC
Confidence 4455555555555555555445555555555554 3445555555556666666666666666554 3355666666
Q ss_pred EeecCCCCCCC-Cc-ccCCCCCCCEEeecCCCCCCCCC
Q 040933 261 TLSLCYCKLLD-IS-VTGELKKLEILCLRGSDIQQLPV 296 (298)
Q Consensus 261 ~L~l~~~~l~~-p~-~i~~L~~L~~L~l~~~~l~~lP~ 296 (298)
+|++++|.+.. |. .++.+++|++|++++|++..+|.
T Consensus 137 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 174 (270)
T 2o6q_A 137 YLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPE 174 (270)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred EEECCCCcCCccCHhHccCCcccceeEecCCcCcEeCh
Confidence 66666666665 33 35666666666666666665554
No 13
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.40 E-value=2.5e-12 Score=109.10 Aligned_cols=112 Identities=21% Similarity=0.363 Sum_probs=82.5
Q ss_pred ccCccEEEEeCCCCccCCCCcCCCCCCCcEEecccccccccccccChHHHhCCCCccEEEecCCCCCCCCcc-ccCCCCC
Q 040933 181 VKLYTSIVLRDIKTNVLPDRVLPECPQLKLFSVRADHQESSSLTIPNNFFEKMIQVRVINLTYMNLLPLPSS-LGLLSNL 259 (298)
Q Consensus 181 ~~~~~~l~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~l~~~~i~~lP~~-i~~L~~L 259 (298)
..+++.|.+.+|.+..++...+..+++|+.|.+.+ +.+..++...|..+++|++|++++|.++.+|.. ++.+++|
T Consensus 84 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~----n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 159 (270)
T 2o6q_A 84 LKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDR----NQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSL 159 (270)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCS----SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred CCCCCEEECCCCcCCcCCHhHcccccCCCEEECCC----CccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCccc
Confidence 45677788888877777776667777888888776 556666666667777888888888877777644 6777778
Q ss_pred cEeecCCCCCCC-C-cccCCCCCCCEEeecCCCCCCCCC
Q 040933 260 RTLSLCYCKLLD-I-SVTGELKKLEILCLRGSDIQQLPV 296 (298)
Q Consensus 260 ~~L~l~~~~l~~-p-~~i~~L~~L~~L~l~~~~l~~lP~ 296 (298)
++|++++|.+.. | ..+.++++|++|++++|++..+|.
T Consensus 160 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 198 (270)
T 2o6q_A 160 KELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPE 198 (270)
T ss_dssp CEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred ceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCH
Confidence 888888777776 3 457777778888887777777765
No 14
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.39 E-value=1.7e-12 Score=102.16 Aligned_cols=113 Identities=20% Similarity=0.217 Sum_probs=97.1
Q ss_pred hhccCccEEEEeCCCCccCCCCcCCCCCCCcEEecccccccccccccChHHHhCCCCccEEEecCCCCCCCC--ccccCC
Q 040933 179 NAVKLYTSIVLRDIKTNVLPDRVLPECPQLKLFSVRADHQESSSLTIPNNFFEKMIQVRVINLTYMNLLPLP--SSLGLL 256 (298)
Q Consensus 179 ~~~~~~~~l~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~l~~~~i~~lP--~~i~~L 256 (298)
....+++.|.+.+|.+..+ ..+..+++|+.|.+++ +.+...++..+..+++|++|++++|.++.+| ..++.+
T Consensus 46 ~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~----N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l 119 (168)
T 2ell_A 46 AEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSE----NRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKL 119 (168)
T ss_dssp GGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEES----CCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSC
T ss_pred HhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcC----CcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcC
Confidence 4567899999999999888 3358899999999998 4555534445588999999999999999987 789999
Q ss_pred CCCcEeecCCCCCCC-Cc----ccCCCCCCCEEeecCCCCCCCCCC
Q 040933 257 SNLRTLSLCYCKLLD-IS----VTGELKKLEILCLRGSDIQQLPVE 297 (298)
Q Consensus 257 ~~L~~L~l~~~~l~~-p~----~i~~L~~L~~L~l~~~~l~~lP~~ 297 (298)
++|++|++++|.+.. |. .++.+++|++|++++|.+.++|.+
T Consensus 120 ~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 165 (168)
T 2ell_A 120 ECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAPDS 165 (168)
T ss_dssp SCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCCSS
T ss_pred CCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhcccc
Confidence 999999999999888 65 799999999999999999999864
No 15
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.39 E-value=1.9e-12 Score=106.55 Aligned_cols=110 Identities=14% Similarity=0.155 Sum_probs=100.2
Q ss_pred hhccCccEEEEeCCCCccCCCCcCCCCCCCcEEecccccccccccccChHHHhCCCCccEEEecCCCCCCC-CccccCCC
Q 040933 179 NAVKLYTSIVLRDIKTNVLPDRVLPECPQLKLFSVRADHQESSSLTIPNNFFEKMIQVRVINLTYMNLLPL-PSSLGLLS 257 (298)
Q Consensus 179 ~~~~~~~~l~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~l~~~~i~~l-P~~i~~L~ 257 (298)
....+++.|.+.+|.+..++...|..+++|+.|.+++ +.+..++...|..+++|++|++++|.++.+ |..++.+.
T Consensus 54 ~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~----N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 129 (220)
T 2v70_A 54 KKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS----NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLS 129 (220)
T ss_dssp GGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS----SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCT
T ss_pred ccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC----CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCc
Confidence 3467899999999999999987789999999999998 677888888889999999999999999997 67899999
Q ss_pred CCcEeecCCCCCCC--CcccCCCCCCCEEeecCCCCC
Q 040933 258 NLRTLSLCYCKLLD--ISVTGELKKLEILCLRGSDIQ 292 (298)
Q Consensus 258 ~L~~L~l~~~~l~~--p~~i~~L~~L~~L~l~~~~l~ 292 (298)
+|++|++++|.++. |..+..+++|++|++++|.+.
T Consensus 130 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 130 SVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp TCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred cCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 99999999999988 788999999999999999754
No 16
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.39 E-value=4.9e-12 Score=107.45 Aligned_cols=113 Identities=25% Similarity=0.401 Sum_probs=71.8
Q ss_pred hccCccEEEEeCCCCccCCCCcCCCCCCCcEEecccccccccccccChHHHhCCCCccEEEecCCCCCCCCcc-ccCCCC
Q 040933 180 AVKLYTSIVLRDIKTNVLPDRVLPECPQLKLFSVRADHQESSSLTIPNNFFEKMIQVRVINLTYMNLLPLPSS-LGLLSN 258 (298)
Q Consensus 180 ~~~~~~~l~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~l~~~~i~~lP~~-i~~L~~ 258 (298)
...+++.|.+.+|.+..++...+..+++|++|.+.+ +.+..++...|..+++|++|++++|.++.+|.. ++.+++
T Consensus 83 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~----n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 158 (272)
T 3rfs_A 83 ELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVE----NQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTN 158 (272)
T ss_dssp TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT----SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred CCCCCCEEECCCCccCccChhHhcCCcCCCEEECCC----CcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCcc
Confidence 345666667766666666665556666777777665 445556655556666777777777766665533 466666
Q ss_pred CcEeecCCCCCCC-C-cccCCCCCCCEEeecCCCCCCCCC
Q 040933 259 LRTLSLCYCKLLD-I-SVTGELKKLEILCLRGSDIQQLPV 296 (298)
Q Consensus 259 L~~L~l~~~~l~~-p-~~i~~L~~L~~L~l~~~~l~~lP~ 296 (298)
|++|++++|.++. | ..++.+++|++|++++|++..+|.
T Consensus 159 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 198 (272)
T 3rfs_A 159 LTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPD 198 (272)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred CCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCH
Confidence 7777777766666 3 335666677777776666666554
No 17
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.38 E-value=6.5e-12 Score=99.64 Aligned_cols=111 Identities=22% Similarity=0.297 Sum_probs=97.6
Q ss_pred hhccCccEEEEeCCCCccCCCCcCCCCCCCcEEecccccccccccccChHHHhCCCCccEEEecCCCCCCCCcc-ccCCC
Q 040933 179 NAVKLYTSIVLRDIKTNVLPDRVLPECPQLKLFSVRADHQESSSLTIPNNFFEKMIQVRVINLTYMNLLPLPSS-LGLLS 257 (298)
Q Consensus 179 ~~~~~~~~l~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~l~~~~i~~lP~~-i~~L~ 257 (298)
..+..++.+.+.+|.+..++...+..+++|++|.+.+ +.+..+|...|..+++|++|++++|.++.+|.. ++.+.
T Consensus 25 ~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~----n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~ 100 (177)
T 2o6r_A 25 GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQ----NQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLT 100 (177)
T ss_dssp TCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCS----SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred CCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCC----CcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCc
Confidence 3457899999999999999887778999999999998 677788888789999999999999999998755 68999
Q ss_pred CCcEeecCCCCCCC-Ccc-cCCCCCCCEEeecCCCCCC
Q 040933 258 NLRTLSLCYCKLLD-ISV-TGELKKLEILCLRGSDIQQ 293 (298)
Q Consensus 258 ~L~~L~l~~~~l~~-p~~-i~~L~~L~~L~l~~~~l~~ 293 (298)
+|++|++++|.++. |.. +..+++|++|++++|.+..
T Consensus 101 ~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 101 QLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp TCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred ccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeec
Confidence 99999999999988 654 6889999999999997653
No 18
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.38 E-value=3.8e-12 Score=106.85 Aligned_cols=113 Identities=21% Similarity=0.273 Sum_probs=101.0
Q ss_pred hccCccEEEEeCCCCccCCCCcCCCCCCCcEEecccccccccccccChHHHhCCCCccEEEecCCCCCCCC-ccccCCCC
Q 040933 180 AVKLYTSIVLRDIKTNVLPDRVLPECPQLKLFSVRADHQESSSLTIPNNFFEKMIQVRVINLTYMNLLPLP-SSLGLLSN 258 (298)
Q Consensus 180 ~~~~~~~l~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~l~~~~i~~lP-~~i~~L~~ 258 (298)
.+..++.|.+.+|.+..++...+..+++|+.|.+++ +.+..++...|..+++|++|++++|.++.+| ..++.+.+
T Consensus 33 ~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~----n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 108 (251)
T 3m19_A 33 IPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDY----NQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQ 108 (251)
T ss_dssp CCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT----SCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTT
T ss_pred CCCCCCEEEccCCCcCccCHhHhcCcccCCEEECCC----CcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCC
Confidence 446899999999999999887789999999999998 6677788777799999999999999999986 45789999
Q ss_pred CcEeecCCCCCCC-Cc-ccCCCCCCCEEeecCCCCCCCCC
Q 040933 259 LRTLSLCYCKLLD-IS-VTGELKKLEILCLRGSDIQQLPV 296 (298)
Q Consensus 259 L~~L~l~~~~l~~-p~-~i~~L~~L~~L~l~~~~l~~lP~ 296 (298)
|++|++++|.++. |. .++.+++|++|++++|++..+|.
T Consensus 109 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 148 (251)
T 3m19_A 109 LDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPA 148 (251)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred CCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCH
Confidence 9999999999998 54 47899999999999999998886
No 19
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.37 E-value=3.2e-12 Score=101.36 Aligned_cols=106 Identities=14% Similarity=0.184 Sum_probs=90.8
Q ss_pred ccEEEEeCCCCccCCCCcCCCCCCCcEEecccccccccccccChHHHhCCCCccEEEecCCCCCCCCcc-ccCCCCCcEe
Q 040933 184 YTSIVLRDIKTNVLPDRVLPECPQLKLFSVRADHQESSSLTIPNNFFEKMIQVRVINLTYMNLLPLPSS-LGLLSNLRTL 262 (298)
Q Consensus 184 ~~~l~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~l~~~~i~~lP~~-i~~L~~L~~L 262 (298)
.+.+.+.++.+..+|..+ .++|+.|.+++ +.+..+++..|..+++|++|+|++|+++.+|.. ++.+.+|++|
T Consensus 14 ~~~l~~~~n~l~~iP~~~---~~~L~~L~Ls~----N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L 86 (174)
T 2r9u_A 14 QTLVNCQNIRLASVPAGI---PTDKQRLWLNN----NQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQL 86 (174)
T ss_dssp SSEEECCSSCCSSCCSCC---CTTCSEEECCS----SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CcEEEeCCCCCCccCCCc---CCCCcEEEeCC----CCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEE
Confidence 367888889999998863 38899999998 677788777779999999999999999999866 5899999999
Q ss_pred ecCCCCCCC-Ccc-cCCCCCCCEEeecCCCCCCCCC
Q 040933 263 SLCYCKLLD-ISV-TGELKKLEILCLRGSDIQQLPV 296 (298)
Q Consensus 263 ~l~~~~l~~-p~~-i~~L~~L~~L~l~~~~l~~lP~ 296 (298)
++++|.++. |.. ++.+++|++|++++|.+...|.
T Consensus 87 ~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~ 122 (174)
T 2r9u_A 87 DLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDCECR 122 (174)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCSEEECCSSCBCTTBG
T ss_pred ECCCCccceeCHHHhccccCCCEEEeCCCCcccccc
Confidence 999999998 654 8999999999999998876654
No 20
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.36 E-value=1.6e-12 Score=115.17 Aligned_cols=109 Identities=17% Similarity=0.290 Sum_probs=50.1
Q ss_pred CccEEEEeCCCCccCCCCcCCCCCCCcEEecccccccccccccChHHHhCCCCccEEEecCCCCCCC-CccccCCCCCcE
Q 040933 183 LYTSIVLRDIKTNVLPDRVLPECPQLKLFSVRADHQESSSLTIPNNFFEKMIQVRVINLTYMNLLPL-PSSLGLLSNLRT 261 (298)
Q Consensus 183 ~~~~l~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~l~~~~i~~l-P~~i~~L~~L~~ 261 (298)
+++.|.+.+|.+..++...|..+++|+.|++++ +.+..++...|..+++|++|+|++|.+..+ |..+..+.+|++
T Consensus 65 ~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~----N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~ 140 (361)
T 2xot_A 65 NLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS----NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQK 140 (361)
T ss_dssp TCCEEECCSSCCCEECTTTTTTCTTCCEEECCS----SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCE
T ss_pred ccCEEECCCCcCCccChhhccCCCCCCEEECCC----CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCE
Confidence 344444444444444433334444444444444 334444444444445555555555544443 334445555555
Q ss_pred eecCCCCCCC-Cccc----CCCCCCCEEeecCCCCCCCC
Q 040933 262 LSLCYCKLLD-ISVT----GELKKLEILCLRGSDIQQLP 295 (298)
Q Consensus 262 L~l~~~~l~~-p~~i----~~L~~L~~L~l~~~~l~~lP 295 (298)
|+|++|.++. |..+ +.+++|++|+|++|++..+|
T Consensus 141 L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~ 179 (361)
T 2xot_A 141 LYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLP 179 (361)
T ss_dssp EECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCC
T ss_pred EECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccC
Confidence 5555555444 3332 34455555555555555444
No 21
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.35 E-value=8.5e-12 Score=105.98 Aligned_cols=118 Identities=23% Similarity=0.283 Sum_probs=101.5
Q ss_pred CCCchhhccCccEEEEeCCCCccCCCCcCCCCCCCcEEecccccccccccccChHHHhCCCCccEEEecCCCCCCCCcc-
Q 040933 174 EWSDENAVKLYTSIVLRDIKTNVLPDRVLPECPQLKLFSVRADHQESSSLTIPNNFFEKMIQVRVINLTYMNLLPLPSS- 252 (298)
Q Consensus 174 ~~~~~~~~~~~~~l~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~l~~~~i~~lP~~- 252 (298)
.++.......++.+.+.+|.+..++. +..+++|++|.+.+ +.+..++...|..+++|++|++++|.++.+|..
T Consensus 55 ~~~~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~----n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 128 (272)
T 3rfs_A 55 SVQGIQYLPNVRYLALGGNKLHDISA--LKELTNLTYLILTG----NQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGV 128 (272)
T ss_dssp CCTTGGGCTTCCEEECTTSCCCCCGG--GTTCTTCCEEECTT----SCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTT
T ss_pred cccccccCCCCcEEECCCCCCCCchh--hcCCCCCCEEECCC----CccCccChhHhcCCcCCCEEECCCCcCCccCHHH
Confidence 34445567889999999999988763 48899999999998 577788888789999999999999999998654
Q ss_pred ccCCCCCcEeecCCCCCCC-C-cccCCCCCCCEEeecCCCCCCCCCC
Q 040933 253 LGLLSNLRTLSLCYCKLLD-I-SVTGELKKLEILCLRGSDIQQLPVE 297 (298)
Q Consensus 253 i~~L~~L~~L~l~~~~l~~-p-~~i~~L~~L~~L~l~~~~l~~lP~~ 297 (298)
++.+.+|++|++++|.++. | ..++.+++|++|++++|++..+|..
T Consensus 129 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 175 (272)
T 3rfs_A 129 FDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEG 175 (272)
T ss_dssp TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred hccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHH
Confidence 7899999999999999988 4 4578999999999999999988753
No 22
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.35 E-value=6.7e-12 Score=107.71 Aligned_cols=113 Identities=19% Similarity=0.266 Sum_probs=84.9
Q ss_pred hccCccEEEEeCCCCccCCCCcCCCCCCCcEEecccccccccccccChHHHhCCCCccEEEecCCCCCCCCcc-ccCCCC
Q 040933 180 AVKLYTSIVLRDIKTNVLPDRVLPECPQLKLFSVRADHQESSSLTIPNNFFEKMIQVRVINLTYMNLLPLPSS-LGLLSN 258 (298)
Q Consensus 180 ~~~~~~~l~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~l~~~~i~~lP~~-i~~L~~ 258 (298)
....++.|.+.+|.+..+|.. +..+++|+.|.+++ +.+..+|...|..+++|++|++++|.++.+|.. +..+.+
T Consensus 75 ~l~~L~~L~Ls~N~l~~l~~~-~~~l~~L~~L~l~~----N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 149 (290)
T 1p9a_G 75 TLPVLGTLDLSHNQLQSLPLL-GQTLPALTVLDVSF----NRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPK 149 (290)
T ss_dssp CCTTCCEEECCSSCCSSCCCC-TTTCTTCCEEECCS----SCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTT
T ss_pred CCCcCCEEECCCCcCCcCchh-hccCCCCCEEECCC----CcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccC
Confidence 345677888888888777764 46778888888877 566677766668888888888888888877644 567888
Q ss_pred CcEeecCCCCCCC-Cc-ccCCCCCCCEEeecCCCCCCCCCC
Q 040933 259 LRTLSLCYCKLLD-IS-VTGELKKLEILCLRGSDIQQLPVE 297 (298)
Q Consensus 259 L~~L~l~~~~l~~-p~-~i~~L~~L~~L~l~~~~l~~lP~~ 297 (298)
|++|++++|+++. |. .+.++++|++|++++|++..+|.+
T Consensus 150 L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~ 190 (290)
T 1p9a_G 150 LEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKG 190 (290)
T ss_dssp CCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred CCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCccChh
Confidence 8888888888777 54 456788888888888888887764
No 23
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.35 E-value=4.7e-12 Score=101.97 Aligned_cols=109 Identities=17% Similarity=0.178 Sum_probs=94.3
Q ss_pred hccCccEEEEeCCCCccCCCC-cCCCCCCCcEEecccccccccccccChHHHhCCCCccEEEecCCCCCCCC-ccccCCC
Q 040933 180 AVKLYTSIVLRDIKTNVLPDR-VLPECPQLKLFSVRADHQESSSLTIPNNFFEKMIQVRVINLTYMNLLPLP-SSLGLLS 257 (298)
Q Consensus 180 ~~~~~~~l~l~~~~~~~l~~~-~~~~~~~L~~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~l~~~~i~~lP-~~i~~L~ 257 (298)
.+..++.+.+.+|.+..++.. .+..+++|++|.+++ +.+..+++..|..+++|++|++++|.++.+| ..++.++
T Consensus 27 ~~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~----N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 102 (192)
T 1w8a_A 27 IPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKR----NQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLH 102 (192)
T ss_dssp CCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCS----SCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCT
T ss_pred CCCCCCEEECCCCcCCccCCccccccCCCCCEEECCC----CCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCC
Confidence 345899999999999988864 468899999999998 6677776556699999999999999999975 4588999
Q ss_pred CCcEeecCCCCCCC--CcccCCCCCCCEEeecCCCCC
Q 040933 258 NLRTLSLCYCKLLD--ISVTGELKKLEILCLRGSDIQ 292 (298)
Q Consensus 258 ~L~~L~l~~~~l~~--p~~i~~L~~L~~L~l~~~~l~ 292 (298)
+|++|++++|.++. |..++.+++|++|++++|.+.
T Consensus 103 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 103 QLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp TCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred CCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 99999999999987 788999999999999999765
No 24
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.35 E-value=4.3e-12 Score=104.49 Aligned_cols=108 Identities=19% Similarity=0.223 Sum_probs=97.9
Q ss_pred hccCccEEEEeCCCCccCCCCcCCCCCCCcEEecccccccccccccChHHHhCCCCccEEEecCCCCCCC-CccccCCCC
Q 040933 180 AVKLYTSIVLRDIKTNVLPDRVLPECPQLKLFSVRADHQESSSLTIPNNFFEKMIQVRVINLTYMNLLPL-PSSLGLLSN 258 (298)
Q Consensus 180 ~~~~~~~l~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~l~~~~i~~l-P~~i~~L~~ 258 (298)
...+++.|.+.+|.+..+.+..|..+++|+.|.+++ +.+..+|...|..+++|++|++++|.++.+ |..++.+.+
T Consensus 54 ~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~----N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 129 (220)
T 2v9t_B 54 PYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYG----NKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHN 129 (220)
T ss_dssp TCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCS----SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred CCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCC----CcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCC
Confidence 346899999999999999777789999999999998 778899999889999999999999999997 577999999
Q ss_pred CcEeecCCCCCCC--CcccCCCCCCCEEeecCCCC
Q 040933 259 LRTLSLCYCKLLD--ISVTGELKKLEILCLRGSDI 291 (298)
Q Consensus 259 L~~L~l~~~~l~~--p~~i~~L~~L~~L~l~~~~l 291 (298)
|++|++++|.++. +..+..+++|++|++++|.+
T Consensus 130 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 130 LNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF 164 (220)
T ss_dssp CCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred CCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCc
Confidence 9999999999998 45699999999999999865
No 25
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.34 E-value=1e-11 Score=101.12 Aligned_cols=109 Identities=23% Similarity=0.370 Sum_probs=97.2
Q ss_pred hccCccEEEEeCCCCccCCCCcCCCCCCCcEEecccccccccccccChHHHhCCCCccEEEecCCCCCCCCcc-ccCCCC
Q 040933 180 AVKLYTSIVLRDIKTNVLPDRVLPECPQLKLFSVRADHQESSSLTIPNNFFEKMIQVRVINLTYMNLLPLPSS-LGLLSN 258 (298)
Q Consensus 180 ~~~~~~~l~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~l~~~~i~~lP~~-i~~L~~ 258 (298)
...+++.|.+.+|.+..++...+..+++|++|.+.+ +.+..+|...|..+++|++|++++|.++.+|.. ++.+.+
T Consensus 50 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~----n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 125 (208)
T 2o6s_A 50 ELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLST----NQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQ 125 (208)
T ss_dssp TCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS----SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred ccccCcEEECCCCccCccChhhcCCCCCcCEEECCC----CcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCc
Confidence 457899999999999999988778999999999998 667788888789999999999999999998755 789999
Q ss_pred CcEeecCCCCCCC-Cc-ccCCCCCCCEEeecCCCCC
Q 040933 259 LRTLSLCYCKLLD-IS-VTGELKKLEILCLRGSDIQ 292 (298)
Q Consensus 259 L~~L~l~~~~l~~-p~-~i~~L~~L~~L~l~~~~l~ 292 (298)
|++|++++|.++. |. .+..+++|++|++++|.+.
T Consensus 126 L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 161 (208)
T 2o6s_A 126 LKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD 161 (208)
T ss_dssp CCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC
T ss_pred CCEEECCCCccceeCHHHhccCCCccEEEecCCCee
Confidence 9999999999988 54 5889999999999999654
No 26
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.34 E-value=1.8e-12 Score=99.87 Aligned_cols=109 Identities=20% Similarity=0.185 Sum_probs=90.7
Q ss_pred ccCccEEEEeCCCCc--cCCCCcCCCCCCCcEEecccccccccccccChHHHhCCCCccEEEecCCCCCC-CCccccCCC
Q 040933 181 VKLYTSIVLRDIKTN--VLPDRVLPECPQLKLFSVRADHQESSSLTIPNNFFEKMIQVRVINLTYMNLLP-LPSSLGLLS 257 (298)
Q Consensus 181 ~~~~~~l~l~~~~~~--~l~~~~~~~~~~L~~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~l~~~~i~~-lP~~i~~L~ 257 (298)
+.+++.+.+.+|.+. .++.. +..+++|+.|.+.+ +.+..+ ..|..+++|++|++++|.++. +|..++.++
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~-~~~l~~L~~L~l~~----n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~ 88 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGL-TDEFEELEFLSTIN----VGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCP 88 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSC-CTTCTTCCEEECTT----SCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCT
T ss_pred CccCeEEEccCCcCChhHHHHH-HhhcCCCcEEECcC----CCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCC
Confidence 467899999999887 66664 57889999999987 455555 335889999999999999988 777777899
Q ss_pred CCcEeecCCCCCCC-C--cccCCCCCCCEEeecCCCCCCCCC
Q 040933 258 NLRTLSLCYCKLLD-I--SVTGELKKLEILCLRGSDIQQLPV 296 (298)
Q Consensus 258 ~L~~L~l~~~~l~~-p--~~i~~L~~L~~L~l~~~~l~~lP~ 296 (298)
+|++|++++|.++. | ..++.+++|++|++++|++..+|.
T Consensus 89 ~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 130 (149)
T 2je0_A 89 NLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLND 130 (149)
T ss_dssp TCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTT
T ss_pred CCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHH
Confidence 99999999999888 5 788999999999999998887764
No 27
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.32 E-value=4.4e-12 Score=112.26 Aligned_cols=115 Identities=18% Similarity=0.204 Sum_probs=103.0
Q ss_pred hhccCccEEEEeCCCCccCCCCcCC-CCCCCcEEecccccccccccccChHHHhCCCCccEEEecCCCCCCCCc-cccCC
Q 040933 179 NAVKLYTSIVLRDIKTNVLPDRVLP-ECPQLKLFSVRADHQESSSLTIPNNFFEKMIQVRVINLTYMNLLPLPS-SLGLL 256 (298)
Q Consensus 179 ~~~~~~~~l~l~~~~~~~l~~~~~~-~~~~L~~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~l~~~~i~~lP~-~i~~L 256 (298)
..+..++.|.+.+|.+..++...+. .+++|+.|.+++ +.+..++...|..+++|++|+|++|.++.+|. .+..+
T Consensus 36 ~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~----N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 111 (361)
T 2xot_A 36 SLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSH----NHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDL 111 (361)
T ss_dssp SCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCS----SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTC
T ss_pred cCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCC----CcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCC
Confidence 3456789999999999999888766 899999999998 67888887778999999999999999999764 68999
Q ss_pred CCCcEeecCCCCCCC--CcccCCCCCCCEEeecCCCCCCCCCC
Q 040933 257 SNLRTLSLCYCKLLD--ISVTGELKKLEILCLRGSDIQQLPVE 297 (298)
Q Consensus 257 ~~L~~L~l~~~~l~~--p~~i~~L~~L~~L~l~~~~l~~lP~~ 297 (298)
.+|++|+|++|.+.. |..+..+++|++|+|++|++..+|..
T Consensus 112 ~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~ 154 (361)
T 2xot_A 112 QALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVE 154 (361)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGG
T ss_pred cCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHH
Confidence 999999999999988 77899999999999999999998853
No 28
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.32 E-value=2.6e-12 Score=101.06 Aligned_cols=110 Identities=21% Similarity=0.230 Sum_probs=95.7
Q ss_pred hccCccEEEEeCCCCc--cCCCCcCCCCCCCcEEecccccccccccccChHHHhCCCCccEEEecCCCCCC-CCccccCC
Q 040933 180 AVKLYTSIVLRDIKTN--VLPDRVLPECPQLKLFSVRADHQESSSLTIPNNFFEKMIQVRVINLTYMNLLP-LPSSLGLL 256 (298)
Q Consensus 180 ~~~~~~~l~l~~~~~~--~l~~~~~~~~~~L~~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~l~~~~i~~-lP~~i~~L 256 (298)
.+..++.+.+.+|.+. .+|.. +..+++|+.|.+.+ +.+..+ ..|..+++|++|++++|.+.. +|..++.+
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~-~~~l~~L~~L~l~~----n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 94 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGL-TAEFVNLEFLSLIN----VGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKL 94 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSC-CGGGGGCCEEEEES----SCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHC
T ss_pred CcccCCEEECCCCCCChhhHHHH-HHhCCCCCEEeCcC----CCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhC
Confidence 3478999999999998 77765 58899999999998 446666 335899999999999999998 78778889
Q ss_pred CCCcEeecCCCCCCC-C--cccCCCCCCCEEeecCCCCCCCCC
Q 040933 257 SNLRTLSLCYCKLLD-I--SVTGELKKLEILCLRGSDIQQLPV 296 (298)
Q Consensus 257 ~~L~~L~l~~~~l~~-p--~~i~~L~~L~~L~l~~~~l~~lP~ 296 (298)
++|++|++++|.++. | ..++.+++|++|++++|.+..+|.
T Consensus 95 ~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~ 137 (168)
T 2ell_A 95 PNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLND 137 (168)
T ss_dssp TTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTT
T ss_pred CCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHH
Confidence 999999999999988 5 789999999999999999888775
No 29
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.32 E-value=9e-12 Score=117.47 Aligned_cols=109 Identities=18% Similarity=0.162 Sum_probs=80.9
Q ss_pred hccCccEEEEeCCCCccCCCCcCCCCCCCcEEecccccccccccccChHHHhCCCCccEEEecCCCCCCC-CccccCCCC
Q 040933 180 AVKLYTSIVLRDIKTNVLPDRVLPECPQLKLFSVRADHQESSSLTIPNNFFEKMIQVRVINLTYMNLLPL-PSSLGLLSN 258 (298)
Q Consensus 180 ~~~~~~~l~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~l~~~~i~~l-P~~i~~L~~ 258 (298)
.+..++.+.+.+|.+..++...+..+++|++|.+++ +.+..+++..|..+++|++|++++|.++.+ |..++.+.+
T Consensus 30 ~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~----n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~ 105 (606)
T 3vq2_A 30 IPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSR----CEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTS 105 (606)
T ss_dssp SCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTT----CCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTT
T ss_pred CCCCcCEEECCCCCcCEeChhhccCCccCcEEeCCC----CcccccCHHHhhchhhcCEeECCCCcccccChhhcCCccc
Confidence 446788888888888777776667788888888877 455666555567778888888888877776 667777777
Q ss_pred CcEeecCCCCCCC--CcccCCCCCCCEEeecCCCCC
Q 040933 259 LRTLSLCYCKLLD--ISVTGELKKLEILCLRGSDIQ 292 (298)
Q Consensus 259 L~~L~l~~~~l~~--p~~i~~L~~L~~L~l~~~~l~ 292 (298)
|++|++++|.+.. |..++++++|++|++++|++.
T Consensus 106 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 141 (606)
T 3vq2_A 106 LENLVAVETKLASLESFPIGQLITLKKLNVAHNFIH 141 (606)
T ss_dssp CCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCC
T ss_pred CCEEEccCCccccccccccCCCCCCCEEeCCCCccc
Confidence 8888887777766 366777777777777777665
No 30
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.32 E-value=2.8e-12 Score=112.08 Aligned_cols=113 Identities=19% Similarity=0.295 Sum_probs=96.6
Q ss_pred hhccCccEEEEeCCCCccCCCCcCCCCCCCcEEecccccccccccccChHHHhCCCCccEEEecCCC-CCCCCccccC--
Q 040933 179 NAVKLYTSIVLRDIKTNVLPDRVLPECPQLKLFSVRADHQESSSLTIPNNFFEKMIQVRVINLTYMN-LLPLPSSLGL-- 255 (298)
Q Consensus 179 ~~~~~~~~l~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~l~~~~-i~~lP~~i~~-- 255 (298)
....+++.|.+.+|.+..+|.. +..+++|++|++.+ +.+..+|..+ ..+++|++|++++|+ +..+|..++.
T Consensus 101 ~~l~~L~~L~L~~n~l~~lp~~-~~~l~~L~~L~Ls~----n~l~~lp~~l-~~l~~L~~L~L~~n~~~~~~p~~~~~~~ 174 (328)
T 4fcg_A 101 FRLSHLQHMTIDAAGLMELPDT-MQQFAGLETLTLAR----NPLRALPASI-ASLNRLRELSIRACPELTELPEPLASTD 174 (328)
T ss_dssp GGGTTCSEEEEESSCCCCCCSC-GGGGTTCSEEEEES----CCCCCCCGGG-GGCTTCCEEEEEEETTCCCCCSCSEEEC
T ss_pred hhCCCCCEEECCCCCccchhHH-HhccCCCCEEECCC----CccccCcHHH-hcCcCCCEEECCCCCCccccChhHhhcc
Confidence 3467899999999999988875 48889999999998 5566888875 899999999999974 5558887765
Q ss_pred -------CCCCcEeecCCCCCCC-CcccCCCCCCCEEeecCCCCCCCCCC
Q 040933 256 -------LSNLRTLSLCYCKLLD-ISVTGELKKLEILCLRGSDIQQLPVE 297 (298)
Q Consensus 256 -------L~~L~~L~l~~~~l~~-p~~i~~L~~L~~L~l~~~~l~~lP~~ 297 (298)
+.+|++|++++|.++. |..++++++|++|++++|++..+|..
T Consensus 175 ~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~ 224 (328)
T 4fcg_A 175 ASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPA 224 (328)
T ss_dssp -CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCCCCGG
T ss_pred chhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCcCchh
Confidence 9999999999999988 99999999999999999999888853
No 31
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.32 E-value=1.5e-11 Score=99.15 Aligned_cols=107 Identities=22% Similarity=0.288 Sum_probs=87.4
Q ss_pred hccCccEEEEeCCCCccCCCCcCCCCCCCcEEecccccccccccccChHHHhCCCCccEEEecCCCCCCCC-ccccCCCC
Q 040933 180 AVKLYTSIVLRDIKTNVLPDRVLPECPQLKLFSVRADHQESSSLTIPNNFFEKMIQVRVINLTYMNLLPLP-SSLGLLSN 258 (298)
Q Consensus 180 ~~~~~~~l~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~l~~~~i~~lP-~~i~~L~~ 258 (298)
.+..++.|.+.+|.+..+|. .+..+++|+.|.+++ +.+..++...|..+++|++|++++|.++.+| ..++.+.+
T Consensus 29 ~~~~l~~L~L~~n~i~~ip~-~~~~l~~L~~L~Ls~----N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~ 103 (193)
T 2wfh_A 29 IPRDVTELYLDGNQFTLVPK-ELSNYKHLTLIDLSN----NRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKS 103 (193)
T ss_dssp CCTTCCEEECCSSCCCSCCG-GGGGCTTCCEEECCS----SCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTT
T ss_pred CCCCCCEEECCCCcCchhHH-HhhcccCCCEEECCC----CcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCC
Confidence 45678889999888888874 467888899998887 6677777777788899999999999888875 46888889
Q ss_pred CcEeecCCCCCCC-Cc-ccCCCCCCCEEeecCCCC
Q 040933 259 LRTLSLCYCKLLD-IS-VTGELKKLEILCLRGSDI 291 (298)
Q Consensus 259 L~~L~l~~~~l~~-p~-~i~~L~~L~~L~l~~~~l 291 (298)
|++|++++|.++. |. .+..+++|++|++++|.+
T Consensus 104 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 104 LRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp CCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred CCEEECCCCCCCeeChhhhhcCccccEEEeCCCCe
Confidence 9999999988888 54 578888999999988764
No 32
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.32 E-value=5.8e-12 Score=101.56 Aligned_cols=105 Identities=23% Similarity=0.338 Sum_probs=91.8
Q ss_pred cEEEEeCCCCccCCCCcCCCCCCCcEEecccccccccccccChHHHhCCCCccEEEecCCCCCCCC-ccccCCCCCcEee
Q 040933 185 TSIVLRDIKTNVLPDRVLPECPQLKLFSVRADHQESSSLTIPNNFFEKMIQVRVINLTYMNLLPLP-SSLGLLSNLRTLS 263 (298)
Q Consensus 185 ~~l~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~l~~~~i~~lP-~~i~~L~~L~~L~ 263 (298)
+.+.+.++.+..+|..+ .++++.|.+.+ +.+..+|.. |..+++|++|++++|.++.+| ..+..+.+|++|+
T Consensus 13 ~~l~~~~~~l~~ip~~~---~~~l~~L~L~~----n~i~~ip~~-~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ 84 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGI---PRDVTELYLDG----NQFTLVPKE-LSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLI 84 (193)
T ss_dssp TEEECTTSCCSSCCSCC---CTTCCEEECCS----SCCCSCCGG-GGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CEEEcCCCCCCcCCCCC---CCCCCEEECCC----CcCchhHHH-hhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEE
Confidence 56788888999998753 46899999998 677788854 599999999999999999986 5699999999999
Q ss_pred cCCCCCCC--CcccCCCCCCCEEeecCCCCCCCCCC
Q 040933 264 LCYCKLLD--ISVTGELKKLEILCLRGSDIQQLPVE 297 (298)
Q Consensus 264 l~~~~l~~--p~~i~~L~~L~~L~l~~~~l~~lP~~ 297 (298)
+++|.++. |..++.+++|++|++++|++..+|..
T Consensus 85 Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~ 120 (193)
T 2wfh_A 85 LSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEG 120 (193)
T ss_dssp CCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTT
T ss_pred CCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChh
Confidence 99999988 56799999999999999999998864
No 33
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.31 E-value=2e-12 Score=124.55 Aligned_cols=109 Identities=17% Similarity=0.279 Sum_probs=98.8
Q ss_pred hccCccEEEEeCCCCccCCCCcCCCCCCCcEEecccccccccccccChHHHhCCCCccEEEecCCCCCCCCccccCCCCC
Q 040933 180 AVKLYTSIVLRDIKTNVLPDRVLPECPQLKLFSVRADHQESSSLTIPNNFFEKMIQVRVINLTYMNLLPLPSSLGLLSNL 259 (298)
Q Consensus 180 ~~~~~~~l~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~l~~~~i~~lP~~i~~L~~L 259 (298)
....++.|.+.+|.+..++..+ ..+++|++|.+++ +.+..+|..+ ..+++|++|+|++|.|+.+|..++.|.+|
T Consensus 222 ~l~~L~~L~Ls~n~l~~l~~~~-~~l~~L~~L~Ls~----N~l~~lp~~~-~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L 295 (727)
T 4b8c_D 222 DDQLWHALDLSNLQIFNISANI-FKYDFLTRLYLNG----NSLTELPAEI-KNLSNLRVLDLSHNRLTSLPAELGSCFQL 295 (727)
T ss_dssp CCCCCCEEECTTSCCSCCCGGG-GGCCSCSCCBCTT----SCCSCCCGGG-GGGTTCCEEECTTSCCSSCCSSGGGGTTC
T ss_pred cCCCCcEEECCCCCCCCCChhh-cCCCCCCEEEeeC----CcCcccChhh-hCCCCCCEEeCcCCcCCccChhhcCCCCC
Confidence 3467999999999999998775 4899999999998 5666899776 99999999999999999999999999999
Q ss_pred cEeecCCCCCCC-CcccCCCCCCCEEeecCCCCCCC
Q 040933 260 RTLSLCYCKLLD-ISVTGELKKLEILCLRGSDIQQL 294 (298)
Q Consensus 260 ~~L~l~~~~l~~-p~~i~~L~~L~~L~l~~~~l~~l 294 (298)
++|+|++|.++. |..|++|++|++|+|++|++...
T Consensus 296 ~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~ 331 (727)
T 4b8c_D 296 KYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQ 331 (727)
T ss_dssp SEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCCSH
T ss_pred CEEECCCCCCCccChhhhcCCCccEEeCCCCccCCC
Confidence 999999999999 99999999999999999998754
No 34
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.31 E-value=4.7e-12 Score=119.53 Aligned_cols=112 Identities=16% Similarity=0.200 Sum_probs=102.2
Q ss_pred hccCccEEEEeCCCCccCCCCcCCCCCCCcEEecccccccccccccChHHHhCCCCccEEEecCCCCCCCCc-cccCCCC
Q 040933 180 AVKLYTSIVLRDIKTNVLPDRVLPECPQLKLFSVRADHQESSSLTIPNNFFEKMIQVRVINLTYMNLLPLPS-SLGLLSN 258 (298)
Q Consensus 180 ~~~~~~~l~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~l~~~~i~~lP~-~i~~L~~ 258 (298)
...+++.|.+++|.+..+++.+|..+++|++|++++ +.+..+|...|..+++|++|++++|+++.+|. .++.+++
T Consensus 74 ~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~----N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~ 149 (635)
T 4g8a_A 74 SFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTG----NPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKT 149 (635)
T ss_dssp TCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTT----CCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTT
T ss_pred CCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccC----CcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcc
Confidence 356899999999999999998889999999999998 67889999888999999999999999999875 5899999
Q ss_pred CcEeecCCCCCCC---CcccCCCCCCCEEeecCCCCCCCC
Q 040933 259 LRTLSLCYCKLLD---ISVTGELKKLEILCLRGSDIQQLP 295 (298)
Q Consensus 259 L~~L~l~~~~l~~---p~~i~~L~~L~~L~l~~~~l~~lP 295 (298)
|++|++++|.+.. |..++.+++|++|++++|++..++
T Consensus 150 L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 189 (635)
T 4g8a_A 150 LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY 189 (635)
T ss_dssp CCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEEC
T ss_pred cCeeccccCccccCCCchhhccchhhhhhcccCccccccc
Confidence 9999999999865 778899999999999999988765
No 35
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.31 E-value=2.1e-11 Score=96.65 Aligned_cols=107 Identities=21% Similarity=0.291 Sum_probs=92.5
Q ss_pred ccEEEEeCCCCccCCCCcCCCCCCCcEEecccccccccccccChHHHhCCCCccEEEecCCCCCCCCcc-ccCCCCCcEe
Q 040933 184 YTSIVLRDIKTNVLPDRVLPECPQLKLFSVRADHQESSSLTIPNNFFEKMIQVRVINLTYMNLLPLPSS-LGLLSNLRTL 262 (298)
Q Consensus 184 ~~~l~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~l~~~~i~~lP~~-i~~L~~L~~L 262 (298)
.+.+.+.++.+..+|.. -.++|+.|.+.+ +.+..+|...|..+++|++|++++|.++.+|.. ++.+.+|++|
T Consensus 9 ~~~l~~~~~~l~~~p~~---~~~~l~~L~l~~----n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 81 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPTG---IPSSATRLELES----NKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTIL 81 (177)
T ss_dssp TTEEECCSSCCSSCCTT---CCTTCSEEECCS----SCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCEEEecCCCCccCCCC---CCCCCcEEEeCC----CcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEE
Confidence 45677888888888864 347999999998 567788888789999999999999999998755 6899999999
Q ss_pred ecCCCCCCC-Cc-ccCCCCCCCEEeecCCCCCCCCCC
Q 040933 263 SLCYCKLLD-IS-VTGELKKLEILCLRGSDIQQLPVE 297 (298)
Q Consensus 263 ~l~~~~l~~-p~-~i~~L~~L~~L~l~~~~l~~lP~~ 297 (298)
++++|.++. |. .++.+++|++|++++|++..+|..
T Consensus 82 ~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~ 118 (177)
T 2o6r_A 82 YLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDG 118 (177)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred ECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHH
Confidence 999999998 54 578999999999999999998864
No 36
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.30 E-value=1.2e-11 Score=97.60 Aligned_cols=105 Identities=17% Similarity=0.195 Sum_probs=88.9
Q ss_pred ccEEEEeCCCCccCCCCcCCCCCCCcEEecccccccccccccChHHHhCCCCccEEEecCCCCCCCCcc-ccCCCCCcEe
Q 040933 184 YTSIVLRDIKTNVLPDRVLPECPQLKLFSVRADHQESSSLTIPNNFFEKMIQVRVINLTYMNLLPLPSS-LGLLSNLRTL 262 (298)
Q Consensus 184 ~~~l~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~l~~~~i~~lP~~-i~~L~~L~~L 262 (298)
.+.+.+.++.+..+|..+ .++++.|.+++ +.+..+++..|..+++|++|++++|+++.+|.. +..+.+|++|
T Consensus 11 ~~~l~~s~n~l~~ip~~~---~~~l~~L~L~~----N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L 83 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGI---PTTTQVLYLYD----NQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQL 83 (170)
T ss_dssp TTEEECTTSCCSSCCSCC---CTTCSEEECCS----SCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCEEEeCCCCcCccCccC---CCCCcEEEcCC----CcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEE
Confidence 467888899999998753 48899999998 677788777679999999999999999998765 5899999999
Q ss_pred ecCCCCCCC-Cc-ccCCCCCCCEEeecCCCCCCCC
Q 040933 263 SLCYCKLLD-IS-VTGELKKLEILCLRGSDIQQLP 295 (298)
Q Consensus 263 ~l~~~~l~~-p~-~i~~L~~L~~L~l~~~~l~~lP 295 (298)
++++|.++. |. .++++++|++|++++|.+.-.+
T Consensus 84 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c 118 (170)
T 3g39_A 84 SLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCAC 118 (170)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCTTB
T ss_pred ECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCCCc
Confidence 999999988 54 5899999999999999776443
No 37
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.30 E-value=1.4e-11 Score=105.21 Aligned_cols=112 Identities=18% Similarity=0.194 Sum_probs=60.4
Q ss_pred cCccEEEEeCCCCccCCCCcCCCCCCCcEEecccccccccccccChHHHhCCCCccEEEecCCCCCCC-CccccCCCCCc
Q 040933 182 KLYTSIVLRDIKTNVLPDRVLPECPQLKLFSVRADHQESSSLTIPNNFFEKMIQVRVINLTYMNLLPL-PSSLGLLSNLR 260 (298)
Q Consensus 182 ~~~~~l~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~l~~~~i~~l-P~~i~~L~~L~ 260 (298)
.+++.|.+.+|.+..+....+..+++|++|.+.+ +..+..++...|..+++|++|++++|.+..+ |..++.+++|+
T Consensus 56 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~---n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 132 (285)
T 1ozn_A 56 RNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD---NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQ 132 (285)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS---CTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred CCCCEEECCCCccceeCHhhcCCccCCCEEeCCC---CCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCC
Confidence 3455555555555444333345555555555554 2224444444445566666666666665554 34455566666
Q ss_pred EeecCCCCCCC-C-cccCCCCCCCEEeecCCCCCCCCC
Q 040933 261 TLSLCYCKLLD-I-SVTGELKKLEILCLRGSDIQQLPV 296 (298)
Q Consensus 261 ~L~l~~~~l~~-p-~~i~~L~~L~~L~l~~~~l~~lP~ 296 (298)
+|++++|.+.. | ..++.+++|++|++++|++..+|.
T Consensus 133 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 170 (285)
T 1ozn_A 133 YLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPE 170 (285)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECT
T ss_pred EEECCCCcccccCHhHhccCCCccEEECCCCcccccCH
Confidence 66666666555 3 335566666666666666555543
No 38
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.29 E-value=1.3e-11 Score=106.00 Aligned_cols=110 Identities=21% Similarity=0.251 Sum_probs=85.1
Q ss_pred ccCccEEEEeCCCCccCCCCcCCCCCCCcEEecccccccccccccChHHHhCCCCccEEEecCCCCCCCC-ccccCCCCC
Q 040933 181 VKLYTSIVLRDIKTNVLPDRVLPECPQLKLFSVRADHQESSSLTIPNNFFEKMIQVRVINLTYMNLLPLP-SSLGLLSNL 259 (298)
Q Consensus 181 ~~~~~~l~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~l~~~~i~~lP-~~i~~L~~L 259 (298)
..+++.|.+.+|.+..++.. ..+++|++|.+++ +.+..+|..+ ..+++|++|++++|+++.+| ..++.+.+|
T Consensus 54 l~~L~~L~L~~n~l~~~~~~--~~l~~L~~L~Ls~----N~l~~l~~~~-~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L 126 (290)
T 1p9a_G 54 YTRLTQLNLDRAELTKLQVD--GTLPVLGTLDLSH----NQLQSLPLLG-QTLPALTVLDVSFNRLTSLPLGALRGLGEL 126 (290)
T ss_dssp CTTCCEEECTTSCCCEEECC--SCCTTCCEEECCS----SCCSSCCCCT-TTCTTCCEEECCSSCCCCCCSSTTTTCTTC
T ss_pred CCCCCEEECCCCccCcccCC--CCCCcCCEEECCC----CcCCcCchhh-ccCCCCCEEECCCCcCcccCHHHHcCCCCC
Confidence 35677777777777766654 6677788887776 5666777654 78888888888888888876 568888889
Q ss_pred cEeecCCCCCCC-C-cccCCCCCCCEEeecCCCCCCCCCC
Q 040933 260 RTLSLCYCKLLD-I-SVTGELKKLEILCLRGSDIQQLPVE 297 (298)
Q Consensus 260 ~~L~l~~~~l~~-p-~~i~~L~~L~~L~l~~~~l~~lP~~ 297 (298)
++|++++|.++. | ..+..+++|+.|++++|++..+|.+
T Consensus 127 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~ 166 (290)
T 1p9a_G 127 QELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAG 166 (290)
T ss_dssp CEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTT
T ss_pred CEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHH
Confidence 999998888888 4 4567888899999988888888864
No 39
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.29 E-value=1.1e-11 Score=105.79 Aligned_cols=111 Identities=15% Similarity=0.219 Sum_probs=68.9
Q ss_pred ccCccEEEEeCCCCccCCCCcCCCCCCCcEEecccccccccccccChHHHhCCCCccEEEecCCCCCCCCc-cccCCCCC
Q 040933 181 VKLYTSIVLRDIKTNVLPDRVLPECPQLKLFSVRADHQESSSLTIPNNFFEKMIQVRVINLTYMNLLPLPS-SLGLLSNL 259 (298)
Q Consensus 181 ~~~~~~l~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~l~~~~i~~lP~-~i~~L~~L 259 (298)
..+++.|.+.+|.+..+++..+..+++|+.|.+.+ +.+..++...|..+++|++|++++|.++.+|. .+..+.+|
T Consensus 104 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~----n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 179 (285)
T 1ozn_A 104 LGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQD----NALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSL 179 (285)
T ss_dssp CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCS----SCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTC
T ss_pred CcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCC----CcccccCHhHhccCCCccEEECCCCcccccCHHHhcCcccc
Confidence 34566666666666666554455666666666665 44555555555666666666666666666553 36666666
Q ss_pred cEeecCCCCCCC--CcccCCCCCCCEEeecCCCCCCCC
Q 040933 260 RTLSLCYCKLLD--ISVTGELKKLEILCLRGSDIQQLP 295 (298)
Q Consensus 260 ~~L~l~~~~l~~--p~~i~~L~~L~~L~l~~~~l~~lP 295 (298)
++|++++|.+.. |..++++++|++|++++|++..+|
T Consensus 180 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 217 (285)
T 1ozn_A 180 DRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALP 217 (285)
T ss_dssp CEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred CEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCC
Confidence 666666666655 556666666666666666666555
No 40
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.29 E-value=6.9e-12 Score=117.39 Aligned_cols=108 Identities=18% Similarity=0.180 Sum_probs=97.9
Q ss_pred cCccEEEEeCCCCccCCCCcCCCCCCCcEEecccccccccccccChHHHhCCCCccEEEecCCCCCCCCccccCCCCCcE
Q 040933 182 KLYTSIVLRDIKTNVLPDRVLPECPQLKLFSVRADHQESSSLTIPNNFFEKMIQVRVINLTYMNLLPLPSSLGLLSNLRT 261 (298)
Q Consensus 182 ~~~~~l~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~l~~~~i~~lP~~i~~L~~L~~ 261 (298)
..++.|.+.+|.+..+|. +..+++|+.|.+++ +.+..+|..+ +.+++|++|+|++|.++.+| .++.+++|++
T Consensus 441 ~~L~~L~Ls~n~l~~lp~--~~~l~~L~~L~Ls~----N~l~~lp~~~-~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~ 512 (567)
T 1dce_A 441 ADVRVLHLAHKDLTVLCH--LEQLLLVTHLDLSH----NRLRALPPAL-AALRCLEVLQASDNALENVD-GVANLPRLQE 512 (567)
T ss_dssp TTCSEEECTTSCCSSCCC--GGGGTTCCEEECCS----SCCCCCCGGG-GGCTTCCEEECCSSCCCCCG-GGTTCSSCCE
T ss_pred cCceEEEecCCCCCCCcC--ccccccCcEeecCc----ccccccchhh-hcCCCCCEEECCCCCCCCCc-ccCCCCCCcE
Confidence 358899999999999986 58999999999998 6677899875 99999999999999999999 9999999999
Q ss_pred eecCCCCCCC---CcccCCCCCCCEEeecCCCCCCCCCC
Q 040933 262 LSLCYCKLLD---ISVTGELKKLEILCLRGSDIQQLPVE 297 (298)
Q Consensus 262 L~l~~~~l~~---p~~i~~L~~L~~L~l~~~~l~~lP~~ 297 (298)
|++++|.++. |..++.+++|++|++++|++..+|+.
T Consensus 513 L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~ 551 (567)
T 1dce_A 513 LLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGI 551 (567)
T ss_dssp EECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSC
T ss_pred EECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccH
Confidence 9999999877 57899999999999999999887753
No 41
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.28 E-value=1.3e-11 Score=107.71 Aligned_cols=111 Identities=23% Similarity=0.260 Sum_probs=71.6
Q ss_pred ccCccEEEEeCCCCccCCCCcCCCCCCCcEEecccccccccccccChHHHhCCCCccEEEecCCCCCC-CCccccCCCCC
Q 040933 181 VKLYTSIVLRDIKTNVLPDRVLPECPQLKLFSVRADHQESSSLTIPNNFFEKMIQVRVINLTYMNLLP-LPSSLGLLSNL 259 (298)
Q Consensus 181 ~~~~~~l~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~l~~~~i~~-lP~~i~~L~~L 259 (298)
..+++.|.+.+|.+..+|.. +..+++|+.|.+.+ +.+..+|..+ ..+++|++|++++|++.. +|..++.+.+|
T Consensus 182 l~~L~~L~L~~n~l~~lp~~-l~~l~~L~~L~L~~----N~l~~l~~~l-~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L 255 (328)
T 4fcg_A 182 LVNLQSLRLEWTGIRSLPAS-IANLQNLKSLKIRN----SPLSALGPAI-HHLPKLEELDLRGCTALRNYPPIFGGRAPL 255 (328)
T ss_dssp STTCCEEEEEEECCCCCCGG-GGGCTTCCEEEEES----SCCCCCCGGG-GGCTTCCEEECTTCTTCCBCCCCTTCCCCC
T ss_pred CCCCCEEECcCCCcCcchHh-hcCCCCCCEEEccC----CCCCcCchhh-ccCCCCCEEECcCCcchhhhHHHhcCCCCC
Confidence 45566666666666666554 35666777777766 4455566653 667777777777765443 56667777777
Q ss_pred cEeecCCCCCCC--CcccCCCCCCCEEeecCCC-CCCCCCC
Q 040933 260 RTLSLCYCKLLD--ISVTGELKKLEILCLRGSD-IQQLPVE 297 (298)
Q Consensus 260 ~~L~l~~~~l~~--p~~i~~L~~L~~L~l~~~~-l~~lP~~ 297 (298)
++|++++|.+.. |..++++++|++|++++|+ +..+|..
T Consensus 256 ~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~ 296 (328)
T 4fcg_A 256 KRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSL 296 (328)
T ss_dssp CEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGG
T ss_pred CEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHH
Confidence 777777776444 6667777777777777764 5566653
No 42
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.27 E-value=1.3e-11 Score=104.82 Aligned_cols=108 Identities=17% Similarity=0.215 Sum_probs=49.8
Q ss_pred CccEEEEeCCCCccCCCCcCCCCCCCcEEecccccccccccccChHHHhCCCCccEEEecCCCCCCCCc-cccCCCCCcE
Q 040933 183 LYTSIVLRDIKTNVLPDRVLPECPQLKLFSVRADHQESSSLTIPNNFFEKMIQVRVINLTYMNLLPLPS-SLGLLSNLRT 261 (298)
Q Consensus 183 ~~~~l~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~l~~~~i~~lP~-~i~~L~~L~~ 261 (298)
+++.+.+.+|.+..++...+..+++|++|.+.+ +.+..++...|..+++|++|++++|.+..++. .++.+.+|++
T Consensus 53 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~----n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 128 (276)
T 2z62_A 53 ELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTG----NPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKE 128 (276)
T ss_dssp TCSEEECTTCCCCEECTTTTTTCTTCCEEECTT----CCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCE
T ss_pred CCcEEECCCCcCCccCHHHccCCcCCCEEECCC----CccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCE
Confidence 344444444444444433334444444444443 23333333333444455555555554444432 3445555555
Q ss_pred eecCCCCCCC---CcccCCCCCCCEEeecCCCCCCC
Q 040933 262 LSLCYCKLLD---ISVTGELKKLEILCLRGSDIQQL 294 (298)
Q Consensus 262 L~l~~~~l~~---p~~i~~L~~L~~L~l~~~~l~~l 294 (298)
|++++|.+.. |..++++++|++|++++|++..+
T Consensus 129 L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~ 164 (276)
T 2z62_A 129 LNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 164 (276)
T ss_dssp EECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEE
T ss_pred EECcCCccceecCchhhccCCCCCEEECCCCCCCcC
Confidence 5555555433 44455555555555555554443
No 43
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.27 E-value=9.7e-12 Score=103.47 Aligned_cols=112 Identities=15% Similarity=0.206 Sum_probs=63.8
Q ss_pred hccCccEEEEeCCCCccCCCCcCCCCCCCcEEecccccccccccccChHHHhCCCCccEEEecC-CCCCCCC-ccccCCC
Q 040933 180 AVKLYTSIVLRDIKTNVLPDRVLPECPQLKLFSVRADHQESSSLTIPNNFFEKMIQVRVINLTY-MNLLPLP-SSLGLLS 257 (298)
Q Consensus 180 ~~~~~~~l~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~l~~-~~i~~lP-~~i~~L~ 257 (298)
.+..++.+.+.+|.+..++...+..+++|++|.+.+ +..+..++...|..+++|++|++++ |.++.+| ..++.++
T Consensus 29 ~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~---n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~ 105 (239)
T 2xwt_C 29 LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSI---DVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELP 105 (239)
T ss_dssp CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEEC---CSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCT
T ss_pred CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCC---CCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCC
Confidence 444666666666666666665556666666666665 2225555555456666666666665 5665554 3455566
Q ss_pred CCcEeecCCCCCCC-CcccCCCCCCC---EEeecCC-CCCCCC
Q 040933 258 NLRTLSLCYCKLLD-ISVTGELKKLE---ILCLRGS-DIQQLP 295 (298)
Q Consensus 258 ~L~~L~l~~~~l~~-p~~i~~L~~L~---~L~l~~~-~l~~lP 295 (298)
+|++|++++|.++. |. ++.+.+|+ +|++++| ++..+|
T Consensus 106 ~L~~L~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~ 147 (239)
T 2xwt_C 106 LLKFLGIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIP 147 (239)
T ss_dssp TCCEEEEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEEC
T ss_pred CCCEEeCCCCCCccccc-cccccccccccEEECCCCcchhhcC
Confidence 66666666655555 43 44444444 5555555 444444
No 44
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.26 E-value=1.8e-11 Score=98.54 Aligned_cols=104 Identities=15% Similarity=0.177 Sum_probs=90.2
Q ss_pred cEEEEeCCCCccCCCCcCCCCCCCcEEecccccccccccccChH-HHhCCCCccEEEecCCCCCCC-CccccCCCCCcEe
Q 040933 185 TSIVLRDIKTNVLPDRVLPECPQLKLFSVRADHQESSSLTIPNN-FFEKMIQVRVINLTYMNLLPL-PSSLGLLSNLRTL 262 (298)
Q Consensus 185 ~~l~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~lp~~-~~~~l~~Lr~L~l~~~~i~~l-P~~i~~L~~L~~L 262 (298)
+.+.+.++.+..+|..+ ..+++.|.+.+ +.+..++.. .|..+++|++|++++|.++.+ |..++.+.+|++|
T Consensus 11 ~~l~~s~~~l~~ip~~~---~~~l~~L~l~~----n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 83 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDI---PLHTTELLLND----NELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQEL 83 (192)
T ss_dssp TEEECTTSCCSSCCSCC---CTTCSEEECCS----CCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEE
T ss_pred CEEEcCCCCcCcCccCC---CCCCCEEECCC----CcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEE
Confidence 67888899999999753 34899999998 567777754 569999999999999999996 7889999999999
Q ss_pred ecCCCCCCC--CcccCCCCCCCEEeecCCCCCCCC
Q 040933 263 SLCYCKLLD--ISVTGELKKLEILCLRGSDIQQLP 295 (298)
Q Consensus 263 ~l~~~~l~~--p~~i~~L~~L~~L~l~~~~l~~lP 295 (298)
++++|.++. |..++.+++|++|++++|++..++
T Consensus 84 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 118 (192)
T 1w8a_A 84 QLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVM 118 (192)
T ss_dssp ECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEEC
T ss_pred ECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeC
Confidence 999999998 556999999999999999988663
No 45
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.26 E-value=5.4e-12 Score=100.05 Aligned_cols=102 Identities=17% Similarity=0.188 Sum_probs=66.2
Q ss_pred CccEEEEeCCCCccCCCCcCCCCCCCcEEecccccccccccccChHHHhCCCCccEEEecCCCCCCCCc--cccCCCCCc
Q 040933 183 LYTSIVLRDIKTNVLPDRVLPECPQLKLFSVRADHQESSSLTIPNNFFEKMIQVRVINLTYMNLLPLPS--SLGLLSNLR 260 (298)
Q Consensus 183 ~~~~l~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~l~~~~i~~lP~--~i~~L~~L~ 260 (298)
+++.+.+.+|.+..++. +..+++|++|.+++ +.+..+|+.+|..+++|++|++++|.+..+|. .++.+++|+
T Consensus 43 ~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~----N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~ 116 (176)
T 1a9n_A 43 QFDAIDFSDNEIRKLDG--FPLLRRLKTLLVNN----NRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLT 116 (176)
T ss_dssp CCSEEECCSSCCCEECC--CCCCSSCCEEECCS----SCCCEECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCC
T ss_pred CCCEEECCCCCCCcccc--cccCCCCCEEECCC----CcccccCcchhhcCCCCCEEECCCCcCCcchhhHhhhcCCCCC
Confidence 66667777666666632 36666677777665 45556665555666777777777776666665 566666777
Q ss_pred EeecCCCCCCC-Ccc----cCCCCCCCEEeecCCC
Q 040933 261 TLSLCYCKLLD-ISV----TGELKKLEILCLRGSD 290 (298)
Q Consensus 261 ~L~l~~~~l~~-p~~----i~~L~~L~~L~l~~~~ 290 (298)
+|++++|++.. |.. ++.+++|++||+++|.
T Consensus 117 ~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 117 YLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp EEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred EEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 77777776655 543 6666777777766654
No 46
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.26 E-value=2.4e-11 Score=108.47 Aligned_cols=112 Identities=15% Similarity=0.196 Sum_probs=85.7
Q ss_pred hccCccEEEEeCCCCccCCCCcCCCCCCCcEEecccccccccccccChHHHhCCCCccEEEecCCCCCCCCcc-ccCCCC
Q 040933 180 AVKLYTSIVLRDIKTNVLPDRVLPECPQLKLFSVRADHQESSSLTIPNNFFEKMIQVRVINLTYMNLLPLPSS-LGLLSN 258 (298)
Q Consensus 180 ~~~~~~~l~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~l~~~~i~~lP~~-i~~L~~ 258 (298)
..++++.+.+.+|.+..++...+..+++|++|.+.+ +.+..+++..|..+++|++|++++|.++.+|.. ++.+++
T Consensus 67 ~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~----n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~ 142 (390)
T 3o6n_A 67 SFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGF----NAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPK 142 (390)
T ss_dssp HCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCS----SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred ccccCcEEECCCCcccccChhhccCCCCcCEEECCC----CCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCC
Confidence 346788888888888777766667788888888877 556667666668888888888888888888766 477888
Q ss_pred CcEeecCCCCCCC--CcccCCCCCCCEEeecCCCCCCCC
Q 040933 259 LRTLSLCYCKLLD--ISVTGELKKLEILCLRGSDIQQLP 295 (298)
Q Consensus 259 L~~L~l~~~~l~~--p~~i~~L~~L~~L~l~~~~l~~lP 295 (298)
|++|++++|.+.. |..++.+++|++|++++|++..+|
T Consensus 143 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 181 (390)
T 3o6n_A 143 LTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD 181 (390)
T ss_dssp CCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC
T ss_pred CcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc
Confidence 8888888888776 556788888888888888776554
No 47
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.25 E-value=8.8e-12 Score=103.74 Aligned_cols=112 Identities=10% Similarity=0.061 Sum_probs=77.1
Q ss_pred ccCccEEEEeCCC-CccCCCCcCCCCCCCcEEecccccccccccccChHHHhCCCCccEEEecCCCCCCCCccccCCCCC
Q 040933 181 VKLYTSIVLRDIK-TNVLPDRVLPECPQLKLFSVRADHQESSSLTIPNNFFEKMIQVRVINLTYMNLLPLPSSLGLLSNL 259 (298)
Q Consensus 181 ~~~~~~l~l~~~~-~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~l~~~~i~~lP~~i~~L~~L 259 (298)
..+++.+.+.+|. +..++...|..+++|++|.+.+ ++.+..+|...|..+++|++|++++|.++.+|. ++.+.+|
T Consensus 54 l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~---~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~lp~-~~~l~~L 129 (239)
T 2xwt_C 54 LPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRN---TRNLTYIDPDALKELPLLKFLGIFNTGLKMFPD-LTKVYST 129 (239)
T ss_dssp CTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEE---ETTCCEECTTSEECCTTCCEEEEEEECCCSCCC-CTTCCBC
T ss_pred CCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCC---CCCeeEcCHHHhCCCCCCCEEeCCCCCCccccc-ccccccc
Confidence 4567777777775 7777765566777777777765 356666666666777777777777777777765 6666666
Q ss_pred c---EeecCCC-CCCC-C-cccCCCCCCC-EEeecCCCCCCCCC
Q 040933 260 R---TLSLCYC-KLLD-I-SVTGELKKLE-ILCLRGSDIQQLPV 296 (298)
Q Consensus 260 ~---~L~l~~~-~l~~-p-~~i~~L~~L~-~L~l~~~~l~~lP~ 296 (298)
+ +|++++| .++. | ..++.+++|+ +|++++|++..+|.
T Consensus 130 ~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~ 173 (239)
T 2xwt_C 130 DIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQG 173 (239)
T ss_dssp CSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECT
T ss_pred ccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCH
Confidence 6 7777777 5666 3 3466777777 77777776666664
No 48
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.25 E-value=1.9e-11 Score=103.84 Aligned_cols=109 Identities=19% Similarity=0.159 Sum_probs=77.3
Q ss_pred ccCccEEEEeCCCCccCCCCcCCCCCCCcEEecccccccccccccChHHHhCCCCccEEEecCCCCCCCC-ccccCCCCC
Q 040933 181 VKLYTSIVLRDIKTNVLPDRVLPECPQLKLFSVRADHQESSSLTIPNNFFEKMIQVRVINLTYMNLLPLP-SSLGLLSNL 259 (298)
Q Consensus 181 ~~~~~~l~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~l~~~~i~~lP-~~i~~L~~L 259 (298)
+..++.+.+.+|.+..++...+..+++|++|.+.+ +.+..++...|..+++|++|++++|.++.+| ..++.+.+|
T Consensus 27 ~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~----n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 102 (276)
T 2z62_A 27 PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSR----CEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSL 102 (276)
T ss_dssp CTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTT----CCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTC
T ss_pred CCCccEEECCCCcccccCHhHhccccCCcEEECCC----CcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccc
Confidence 45677777777777777665567777777777776 4555666655677777777777777777654 567777777
Q ss_pred cEeecCCCCCCC--CcccCCCCCCCEEeecCCCCCC
Q 040933 260 RTLSLCYCKLLD--ISVTGELKKLEILCLRGSDIQQ 293 (298)
Q Consensus 260 ~~L~l~~~~l~~--p~~i~~L~~L~~L~l~~~~l~~ 293 (298)
++|++++|.+.. +..++++++|++|++++|++..
T Consensus 103 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 138 (276)
T 2z62_A 103 QKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQS 138 (276)
T ss_dssp CEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCC
T ss_pred cEEECCCCCccccCchhcccCCCCCEEECcCCccce
Confidence 777777777666 3357777777777777777665
No 49
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.25 E-value=2.6e-11 Score=110.23 Aligned_cols=112 Identities=25% Similarity=0.380 Sum_probs=90.6
Q ss_pred hccCccEEEEeCCCCccCCCCcCCCCCCCcEEecccccccccccccChHHHhCCCCccEEEecCCCCCCC-CccccCCCC
Q 040933 180 AVKLYTSIVLRDIKTNVLPDRVLPECPQLKLFSVRADHQESSSLTIPNNFFEKMIQVRVINLTYMNLLPL-PSSLGLLSN 258 (298)
Q Consensus 180 ~~~~~~~l~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~l~~~~i~~l-P~~i~~L~~ 258 (298)
.++.++.|.+.+|.+..+++..+..+++|++|.+.+ +.....++...|..+++|++|++++|.+..+ |..++.+.+
T Consensus 28 l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~---n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 104 (455)
T 3v47_A 28 LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQ---QTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLAN 104 (455)
T ss_dssp CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCC---CSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTT
T ss_pred CCCccCEEEecCCccCcCChhHhccCccccEEECcC---CcccceECcccccccccCCEEeCCCCccCccChhhccCccc
Confidence 557899999999999888666678899999999988 4444467666678889999999999988875 778888888
Q ss_pred CcEeecCCCCCCC--Ccc--cCCCCCCCEEeecCCCCCCC
Q 040933 259 LRTLSLCYCKLLD--ISV--TGELKKLEILCLRGSDIQQL 294 (298)
Q Consensus 259 L~~L~l~~~~l~~--p~~--i~~L~~L~~L~l~~~~l~~l 294 (298)
|++|++++|.+.. |.. ++++++|++|++++|++..+
T Consensus 105 L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 144 (455)
T 3v47_A 105 LEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKI 144 (455)
T ss_dssp CCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSC
T ss_pred CCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCcc
Confidence 8888888888876 444 88888888888888887766
No 50
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.25 E-value=2.2e-11 Score=114.82 Aligned_cols=111 Identities=15% Similarity=0.194 Sum_probs=92.4
Q ss_pred ccCccEEEEeCCCCccCCCCcCCCCCCCcEEecccccccccccccChHHHhCCCCccEEEecCCCCCCCCcc-ccCCCCC
Q 040933 181 VKLYTSIVLRDIKTNVLPDRVLPECPQLKLFSVRADHQESSSLTIPNNFFEKMIQVRVINLTYMNLLPLPSS-LGLLSNL 259 (298)
Q Consensus 181 ~~~~~~l~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~l~~~~i~~lP~~-i~~L~~L 259 (298)
...++.|.+.+|.+..+++..+..+++|++|.+.+ +.+..+|+..|..+++|++|++++|.++.+|.. ++.+++|
T Consensus 74 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~----n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L 149 (597)
T 3oja_B 74 FRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGF----NAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKL 149 (597)
T ss_dssp CCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCS----SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred CCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCC----CcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCC
Confidence 46788899988888888876678888999999887 567777777778899999999999998888766 4888999
Q ss_pred cEeecCCCCCCC--CcccCCCCCCCEEeecCCCCCCCC
Q 040933 260 RTLSLCYCKLLD--ISVTGELKKLEILCLRGSDIQQLP 295 (298)
Q Consensus 260 ~~L~l~~~~l~~--p~~i~~L~~L~~L~l~~~~l~~lP 295 (298)
++|++++|.+.. |..++.+++|++|++++|++..+|
T Consensus 150 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 187 (597)
T 3oja_B 150 TTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD 187 (597)
T ss_dssp CEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC
T ss_pred CEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC
Confidence 999999998877 557888999999999988877654
No 51
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.24 E-value=5.1e-11 Score=116.76 Aligned_cols=117 Identities=23% Similarity=0.323 Sum_probs=99.0
Q ss_pred CCCchhhccCccEEEEeCCCCccCCCCcCCCCCCCcEEecccccccccccccChHHHhCCCCccEEEecCCCCCCC-Ccc
Q 040933 174 EWSDENAVKLYTSIVLRDIKTNVLPDRVLPECPQLKLFSVRADHQESSSLTIPNNFFEKMIQVRVINLTYMNLLPL-PSS 252 (298)
Q Consensus 174 ~~~~~~~~~~~~~l~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~l~~~~i~~l-P~~ 252 (298)
..|. .+..++.|.+++|.+..+.+..+..+++|++|++++ +.....+++..|..+++|++|+|++|.+..+ |..
T Consensus 18 ~vP~--lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~---n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~ 92 (844)
T 3j0a_A 18 QVPQ--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGS---QYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDA 92 (844)
T ss_dssp CCCS--SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECT---TCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTS
T ss_pred CCCC--CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCC---CCCccccCHHHhcCCCCCCEEECCCCcCcccCHhH
Confidence 4554 678999999999999988777779999999999998 5567777666679999999999999999885 788
Q ss_pred ccCCCCCcEeecCCCCCCC--Ccc--cCCCCCCCEEeecCCCCCCCC
Q 040933 253 LGLLSNLRTLSLCYCKLLD--ISV--TGELKKLEILCLRGSDIQQLP 295 (298)
Q Consensus 253 i~~L~~L~~L~l~~~~l~~--p~~--i~~L~~L~~L~l~~~~l~~lP 295 (298)
++.+.+|++|++++|.+.. |.. ++++++|++|++++|++..++
T Consensus 93 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~ 139 (844)
T 3j0a_A 93 FQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLY 139 (844)
T ss_dssp SCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCC
T ss_pred ccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccc
Confidence 9999999999999999876 554 889999999999999877654
No 52
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.24 E-value=3.7e-11 Score=112.28 Aligned_cols=108 Identities=19% Similarity=0.160 Sum_probs=58.8
Q ss_pred ccCccEEEEeCCCCccCCCCcCCCCCCCcEEecccccccccccccChHHHhCCCCccEEEecCCCCCCCC-ccccCCCCC
Q 040933 181 VKLYTSIVLRDIKTNVLPDRVLPECPQLKLFSVRADHQESSSLTIPNNFFEKMIQVRVINLTYMNLLPLP-SSLGLLSNL 259 (298)
Q Consensus 181 ~~~~~~l~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~l~~~~i~~lP-~~i~~L~~L 259 (298)
+..++.+.+.+|.+..++...|..+++|++|++++ +.+..+++..|..+++|++|++++|.++.+| ..++.+.+|
T Consensus 27 ~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~----n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 102 (570)
T 2z63_A 27 PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSR----CEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSL 102 (570)
T ss_dssp CSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTT----CCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTC
T ss_pred cccccEEEccCCccCccChhHhhCCCCceEEECCC----CcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCcccc
Confidence 44566666666666665554456666666666665 3344454444455555555555555555543 445555555
Q ss_pred cEeecCCCCCCC-C-cccCCCCCCCEEeecCCCCC
Q 040933 260 RTLSLCYCKLLD-I-SVTGELKKLEILCLRGSDIQ 292 (298)
Q Consensus 260 ~~L~l~~~~l~~-p-~~i~~L~~L~~L~l~~~~l~ 292 (298)
++|++++|.+.. | ..++++++|++|++++|.+.
T Consensus 103 ~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~ 137 (570)
T 2z63_A 103 QKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQ 137 (570)
T ss_dssp CEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCC
T ss_pred ccccccccccccCCCccccccccccEEecCCCccc
Confidence 555555555544 2 23555555555555555444
No 53
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.24 E-value=2.3e-11 Score=107.17 Aligned_cols=111 Identities=22% Similarity=0.272 Sum_probs=73.9
Q ss_pred ccCccEEEEeCCCCccCCCCcCCCCCCCcEEecccccccccccccChHHHhCCCCccEEEecCCCCCCCCcc-ccCCCCC
Q 040933 181 VKLYTSIVLRDIKTNVLPDRVLPECPQLKLFSVRADHQESSSLTIPNNFFEKMIQVRVINLTYMNLLPLPSS-LGLLSNL 259 (298)
Q Consensus 181 ~~~~~~l~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~l~~~~i~~lP~~-i~~L~~L 259 (298)
..+++.+.+.+|.+..++...+..+++|++|.+.+ +.+..++...|..+++|++|++++|.++.+|.. ++.+++|
T Consensus 51 ~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~----n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 126 (353)
T 2z80_A 51 TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTS----NGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSL 126 (353)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTT----SCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTC
T ss_pred cccCcEEECCCCcCcccCHHHhccCCCCCEEECCC----CccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccC
Confidence 35677777777777777665557777777777766 455555554456777777777777777776654 6667777
Q ss_pred cEeecCCCCCCC-Cc--ccCCCCCCCEEeecCC-CCCCCC
Q 040933 260 RTLSLCYCKLLD-IS--VTGELKKLEILCLRGS-DIQQLP 295 (298)
Q Consensus 260 ~~L~l~~~~l~~-p~--~i~~L~~L~~L~l~~~-~l~~lP 295 (298)
++|++++|.+.. |. .++++++|++|++++| .+..+|
T Consensus 127 ~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~ 166 (353)
T 2z80_A 127 TFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQ 166 (353)
T ss_dssp SEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEEC
T ss_pred CEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccC
Confidence 777777777666 44 5666777777777766 355443
No 54
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.23 E-value=1.2e-11 Score=119.02 Aligned_cols=97 Identities=23% Similarity=0.271 Sum_probs=84.1
Q ss_pred CCCCcCCCCCCCcEEecccccccccccccChHHHhCCCCccEEEecCCCCCCCCccccCCCCCcEeecCCCCCCC-Cccc
Q 040933 197 LPDRVLPECPQLKLFSVRADHQESSSLTIPNNFFEKMIQVRVINLTYMNLLPLPSSLGLLSNLRTLSLCYCKLLD-ISVT 275 (298)
Q Consensus 197 l~~~~~~~~~~L~~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~l~~~~i~~lP~~i~~L~~L~~L~l~~~~l~~-p~~i 275 (298)
+++..+..+++|+.|.+++ +.+..+|..+| .+++|++|+|++|.++.+|..++.|.+|++|+|++|.++. |..+
T Consensus 215 ~~~~~~~~l~~L~~L~Ls~----n~l~~l~~~~~-~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~ 289 (727)
T 4b8c_D 215 MPKDSKYDDQLWHALDLSN----LQIFNISANIF-KYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAEL 289 (727)
T ss_dssp -------CCCCCCEEECTT----SCCSCCCGGGG-GCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSG
T ss_pred cChhhhccCCCCcEEECCC----CCCCCCChhhc-CCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhh
Confidence 3344468889999999998 56778998884 8999999999999999999999999999999999999999 9999
Q ss_pred CCCCCCCEEeecCCCCCCCCCCC
Q 040933 276 GELKKLEILCLRGSDIQQLPVEL 298 (298)
Q Consensus 276 ~~L~~L~~L~l~~~~l~~lP~~i 298 (298)
++|.+|++|+|++|.|..+|.++
T Consensus 290 ~~l~~L~~L~L~~N~l~~lp~~~ 312 (727)
T 4b8c_D 290 GSCFQLKYFYFFDNMVTTLPWEF 312 (727)
T ss_dssp GGGTTCSEEECCSSCCCCCCSST
T ss_pred cCCCCCCEEECCCCCCCccChhh
Confidence 99999999999999999999754
No 55
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.23 E-value=1.9e-11 Score=96.88 Aligned_cols=109 Identities=16% Similarity=0.181 Sum_probs=93.3
Q ss_pred hccCccEEEEeCCCCccCCCCcCCCC-CCCcEEecccccccccccccChHHHhCCCCccEEEecCCCCCCCCccc-cCCC
Q 040933 180 AVKLYTSIVLRDIKTNVLPDRVLPEC-PQLKLFSVRADHQESSSLTIPNNFFEKMIQVRVINLTYMNLLPLPSSL-GLLS 257 (298)
Q Consensus 180 ~~~~~~~l~l~~~~~~~l~~~~~~~~-~~L~~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~l~~~~i~~lP~~i-~~L~ 257 (298)
.+.+++.+.+.+|.+..++.. ..+ ++|+.|.+++ +.+..++ .|..+++|++|++++|.++.+|+.+ +.++
T Consensus 17 ~~~~L~~L~l~~n~l~~i~~~--~~~~~~L~~L~Ls~----N~l~~~~--~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 88 (176)
T 1a9n_A 17 NAVRDRELDLRGYKIPVIENL--GATLDQFDAIDFSD----NEIRKLD--GFPLLRRLKTLLVNNNRICRIGEGLDQALP 88 (176)
T ss_dssp CTTSCEEEECTTSCCCSCCCG--GGGTTCCSEEECCS----SCCCEEC--CCCCCSSCCEEECCSSCCCEECSCHHHHCT
T ss_pred CcCCceEEEeeCCCCchhHHh--hhcCCCCCEEECCC----CCCCccc--ccccCCCCCEEECCCCcccccCcchhhcCC
Confidence 346789999999999988653 444 4999999998 5666663 2589999999999999999998665 8999
Q ss_pred CCcEeecCCCCCCC-Cc--ccCCCCCCCEEeecCCCCCCCCC
Q 040933 258 NLRTLSLCYCKLLD-IS--VTGELKKLEILCLRGSDIQQLPV 296 (298)
Q Consensus 258 ~L~~L~l~~~~l~~-p~--~i~~L~~L~~L~l~~~~l~~lP~ 296 (298)
+|++|++++|.+.. |. .++.+++|++|++++|.+..+|.
T Consensus 89 ~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~ 130 (176)
T 1a9n_A 89 DLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKH 130 (176)
T ss_dssp TCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTT
T ss_pred CCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHh
Confidence 99999999999988 76 89999999999999999887775
No 56
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.23 E-value=6.1e-11 Score=95.70 Aligned_cols=105 Identities=16% Similarity=0.158 Sum_probs=48.2
Q ss_pred cCccEEEEeCCCCccCCCCcCCCCCCCcEEecccccccccccccChHHHhCCCCccEEEecCCC-CCCCCccccCCCCCc
Q 040933 182 KLYTSIVLRDIKTNVLPDRVLPECPQLKLFSVRADHQESSSLTIPNNFFEKMIQVRVINLTYMN-LLPLPSSLGLLSNLR 260 (298)
Q Consensus 182 ~~~~~l~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~l~~~~-i~~lP~~i~~L~~L~ 260 (298)
.+++.+.+.+|.+.......+..+++|+.|.+++ +.+.......|..+++|++|++++|. +..+| .++.+++|+
T Consensus 88 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~----n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~ 162 (197)
T 4ezg_A 88 SNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISH----SAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELK 162 (197)
T ss_dssp TTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCS----SBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCC
T ss_pred CCCCEEEeECCccCcccChhhcCCCCCCEEEecC----CccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCC
Confidence 4445555555544432111234455555555554 22222111223555555555555554 44454 455555555
Q ss_pred EeecCCCCCCCCcccCCCCCCCEEeecCCCC
Q 040933 261 TLSLCYCKLLDISVTGELKKLEILCLRGSDI 291 (298)
Q Consensus 261 ~L~l~~~~l~~p~~i~~L~~L~~L~l~~~~l 291 (298)
+|++++|.+.....+..+++|++|++++|++
T Consensus 163 ~L~l~~n~i~~~~~l~~l~~L~~L~l~~N~i 193 (197)
T 4ezg_A 163 SLNIQFDGVHDYRGIEDFPKLNQLYAFSQTI 193 (197)
T ss_dssp EEECTTBCCCCCTTGGGCSSCCEEEECBC--
T ss_pred EEECCCCCCcChHHhccCCCCCEEEeeCccc
Confidence 5555555555522455555555555555544
No 57
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.23 E-value=1.5e-10 Score=93.32 Aligned_cols=115 Identities=10% Similarity=0.186 Sum_probs=96.6
Q ss_pred CCCchhhccCccEEEEeCCCCccCCCCcCCCCCCCcEEecccccccccccc-cChHHHhCCCCccEEEecCCCCCC-CCc
Q 040933 174 EWSDENAVKLYTSIVLRDIKTNVLPDRVLPECPQLKLFSVRADHQESSSLT-IPNNFFEKMIQVRVINLTYMNLLP-LPS 251 (298)
Q Consensus 174 ~~~~~~~~~~~~~l~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~-lp~~~~~~l~~Lr~L~l~~~~i~~-lP~ 251 (298)
..+......+++.+.+.+|.+..++. +..+++|++|.+.+ +.+.. .|.. |..+++|++|++++|.++. .|.
T Consensus 58 ~l~~l~~l~~L~~L~l~~n~~~~~~~--l~~l~~L~~L~l~~----n~l~~~~~~~-l~~l~~L~~L~Ls~n~i~~~~~~ 130 (197)
T 4ezg_A 58 DLTGIEYAHNIKDLTINNIHATNYNP--ISGLSNLERLRIMG----KDVTSDKIPN-LSGLTSLTLLDISHSAHDDSILT 130 (197)
T ss_dssp CCTTGGGCTTCSEEEEESCCCSCCGG--GTTCTTCCEEEEEC----TTCBGGGSCC-CTTCTTCCEEECCSSBCBGGGHH
T ss_pred ChHHHhcCCCCCEEEccCCCCCcchh--hhcCCCCCEEEeEC----CccCcccChh-hcCCCCCCEEEecCCccCcHhHH
Confidence 34455667899999999998877764 48899999999998 44443 4544 4899999999999999987 678
Q ss_pred cccCCCCCcEeecCCCC-CCCCcccCCCCCCCEEeecCCCCCCCC
Q 040933 252 SLGLLSNLRTLSLCYCK-LLDISVTGELKKLEILCLRGSDIQQLP 295 (298)
Q Consensus 252 ~i~~L~~L~~L~l~~~~-l~~p~~i~~L~~L~~L~l~~~~l~~lP 295 (298)
.++.+++|++|++++|. +...+.++.+++|++|++++|++..+|
T Consensus 131 ~l~~l~~L~~L~L~~n~~i~~~~~l~~l~~L~~L~l~~n~i~~~~ 175 (197)
T 4ezg_A 131 KINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHDYR 175 (197)
T ss_dssp HHTTCSSCCEEECCSCTBCCCCGGGGGCSSCCEEECTTBCCCCCT
T ss_pred HHhhCCCCCEEEccCCCCccccHhhcCCCCCCEEECCCCCCcChH
Confidence 89999999999999998 887447999999999999999988876
No 58
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.22 E-value=3.7e-11 Score=109.09 Aligned_cols=112 Identities=22% Similarity=0.295 Sum_probs=65.9
Q ss_pred ccCccEEEEeCCCCccCCCCcCCCCCCCcEEecccccccccccccChHHHhCCCCccEEEecCCCCCCCCccccCCCCCc
Q 040933 181 VKLYTSIVLRDIKTNVLPDRVLPECPQLKLFSVRADHQESSSLTIPNNFFEKMIQVRVINLTYMNLLPLPSSLGLLSNLR 260 (298)
Q Consensus 181 ~~~~~~l~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~l~~~~i~~lP~~i~~L~~L~ 260 (298)
..+++.|.+.+|.+..++...+..+++|+.|.+.+ ++.+..++...|..+++|++|++++|+++.+| .+..+.+|+
T Consensus 135 l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~---~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~ 210 (440)
T 3zyj_A 135 LSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGE---LKRLSYISEGAFEGLSNLRYLNLAMCNLREIP-NLTPLIKLD 210 (440)
T ss_dssp CSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCC---CTTCCEECTTTTTTCSSCCEEECTTSCCSSCC-CCTTCSSCC
T ss_pred cccCceeeCCCCcccccCHHHhhhCcccCEeCCCC---CCCcceeCcchhhcccccCeecCCCCcCcccc-ccCCCcccC
Confidence 35666777777777666665556666666666665 45555556555566666666666666655555 344455555
Q ss_pred EeecCCCCCC------------------------C--CcccCCCCCCCEEeecCCCCCCCCC
Q 040933 261 TLSLCYCKLL------------------------D--ISVTGELKKLEILCLRGSDIQQLPV 296 (298)
Q Consensus 261 ~L~l~~~~l~------------------------~--p~~i~~L~~L~~L~l~~~~l~~lP~ 296 (298)
+|++++|.++ . |..+..+++|++|+|++|++..+|.
T Consensus 211 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 272 (440)
T 3zyj_A 211 ELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPH 272 (440)
T ss_dssp EEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCT
T ss_pred EEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccCh
Confidence 5555555444 4 3345555666666666666665554
No 59
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.22 E-value=2e-11 Score=109.01 Aligned_cols=113 Identities=14% Similarity=0.177 Sum_probs=100.4
Q ss_pred hccCccEEEEeCCCCccCCCCcCCCCCCCcEEecccccccccccccChHHHhCCCCccEEEecCCCCCCCC-ccccCCCC
Q 040933 180 AVKLYTSIVLRDIKTNVLPDRVLPECPQLKLFSVRADHQESSSLTIPNNFFEKMIQVRVINLTYMNLLPLP-SSLGLLSN 258 (298)
Q Consensus 180 ~~~~~~~l~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~l~~~~i~~lP-~~i~~L~~ 258 (298)
...+++.+.+.++.+..+|..++..+++|++|.+.+ +.+..++...|..+++|++|++++|.+..+| ..++.+++
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~----n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 118 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLND----LQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPL 118 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTT----SCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCC----CcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCC
Confidence 457899999999999999987778899999999998 5677788766799999999999999999975 56899999
Q ss_pred CcEeecCCCCCCC-Ccc-cCCCCCCCEEeecCCCCCCCCC
Q 040933 259 LRTLSLCYCKLLD-ISV-TGELKKLEILCLRGSDIQQLPV 296 (298)
Q Consensus 259 L~~L~l~~~~l~~-p~~-i~~L~~L~~L~l~~~~l~~lP~ 296 (298)
|++|++++|.+.. |.. ++++++|++|++++|++..+|.
T Consensus 119 L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~ 158 (390)
T 3o6n_A 119 LTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIED 158 (390)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCT
T ss_pred CCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccCh
Confidence 9999999999999 765 5899999999999999887764
No 60
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.22 E-value=3.1e-11 Score=113.74 Aligned_cols=113 Identities=14% Similarity=0.130 Sum_probs=98.0
Q ss_pred hccCccEEEEeCCCCccCCCCcCCCCCCCcEEecccccccccccccChHHHhCCCCccEEEecCCCCCCCC-ccccCCCC
Q 040933 180 AVKLYTSIVLRDIKTNVLPDRVLPECPQLKLFSVRADHQESSSLTIPNNFFEKMIQVRVINLTYMNLLPLP-SSLGLLSN 258 (298)
Q Consensus 180 ~~~~~~~l~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~l~~~~i~~lP-~~i~~L~~ 258 (298)
...+++.+.+.+|.+..+++..|..+++|++|.+++ +.+..+++..|..+++|++|++++|.+..+| ..++.+.+
T Consensus 54 ~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~----n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 129 (606)
T 3vq2_A 54 NFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTG----NPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLIT 129 (606)
T ss_dssp TCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTT----CCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTT
T ss_pred CCccCcEEeCCCCcccccCHHHhhchhhcCEeECCC----CcccccChhhcCCcccCCEEEccCCccccccccccCCCCC
Confidence 457899999999999998877778999999999998 5566775555699999999999999999876 78999999
Q ss_pred CcEeecCCCCCCC---CcccCCCCCCCEEeecCCCCCCCCC
Q 040933 259 LRTLSLCYCKLLD---ISVTGELKKLEILCLRGSDIQQLPV 296 (298)
Q Consensus 259 L~~L~l~~~~l~~---p~~i~~L~~L~~L~l~~~~l~~lP~ 296 (298)
|++|++++|.+.. |..++++++|++|++++|++..+|.
T Consensus 130 L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~ 170 (606)
T 3vq2_A 130 LKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITV 170 (606)
T ss_dssp CCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECT
T ss_pred CCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecCh
Confidence 9999999999773 8899999999999999998887653
No 61
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.21 E-value=4e-11 Score=114.57 Aligned_cols=112 Identities=19% Similarity=0.182 Sum_probs=81.8
Q ss_pred hccCccEEEEeCCCCccCCCCcCCCCCCCcEEecccccccccccccChHHHhCCCCccEEEecCCCCCCCCc-cccCCCC
Q 040933 180 AVKLYTSIVLRDIKTNVLPDRVLPECPQLKLFSVRADHQESSSLTIPNNFFEKMIQVRVINLTYMNLLPLPS-SLGLLSN 258 (298)
Q Consensus 180 ~~~~~~~l~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~l~~~~i~~lP~-~i~~L~~ 258 (298)
.+..++++.+.+|.+..++...+..+++|++|.+++ +.+..+++..|..+++|++|++++|.++.+|. .++.+.+
T Consensus 23 ~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~----n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~ 98 (680)
T 1ziw_A 23 LPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGF----NTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTN 98 (680)
T ss_dssp SCTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCS----SCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred cCCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCC----CccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCC
Confidence 346788888888888877776667778888888876 44555555556777788888888877777765 4777777
Q ss_pred CcEeecCCCCCCC--CcccCCCCCCCEEeecCCCCCCCC
Q 040933 259 LRTLSLCYCKLLD--ISVTGELKKLEILCLRGSDIQQLP 295 (298)
Q Consensus 259 L~~L~l~~~~l~~--p~~i~~L~~L~~L~l~~~~l~~lP 295 (298)
|++|++++|.+.. |..++++++|++|++++|++...|
T Consensus 99 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 137 (680)
T 1ziw_A 99 LTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTK 137 (680)
T ss_dssp CSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCC
T ss_pred CCEEECCCCccCccChhHccccCCCCEEECCCCcccccC
Confidence 8888887777766 456777777777777777666544
No 62
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.21 E-value=2.7e-11 Score=113.21 Aligned_cols=112 Identities=16% Similarity=0.200 Sum_probs=98.1
Q ss_pred hccCccEEEEeCCCCccCCCCcCCCCCCCcEEecccccccccccccChHHHhCCCCccEEEecCCCCCCCCc-cccCCCC
Q 040933 180 AVKLYTSIVLRDIKTNVLPDRVLPECPQLKLFSVRADHQESSSLTIPNNFFEKMIQVRVINLTYMNLLPLPS-SLGLLSN 258 (298)
Q Consensus 180 ~~~~~~~l~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~l~~~~i~~lP~-~i~~L~~ 258 (298)
...+++.+.+.+|.+..+++..|..+++|++|.+.+ +.+..+++..|..+++|++|++++|.++.+|. .++.+.+
T Consensus 50 ~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~----n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~ 125 (570)
T 2z63_A 50 SFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTG----NPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKT 125 (570)
T ss_dssp TCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTT----CCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTT
T ss_pred CCCCceEEECCCCcCCccCcccccCchhCCEEeCcC----CcCCccCHhhhcCccccccccccccccccCCCcccccccc
Confidence 456899999999999998887788999999999998 56777777677999999999999999999875 6999999
Q ss_pred CcEeecCCCCCCC---CcccCCCCCCCEEeecCCCCCCCC
Q 040933 259 LRTLSLCYCKLLD---ISVTGELKKLEILCLRGSDIQQLP 295 (298)
Q Consensus 259 L~~L~l~~~~l~~---p~~i~~L~~L~~L~l~~~~l~~lP 295 (298)
|++|++++|.+.. |..++++++|++|++++|++..+|
T Consensus 126 L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~ 165 (570)
T 2z63_A 126 LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY 165 (570)
T ss_dssp CCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEEC
T ss_pred ccEEecCCCccceecChhhhcccCCCCEEeCcCCccceec
Confidence 9999999999774 888999999999999999887664
No 63
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.21 E-value=5.2e-11 Score=108.25 Aligned_cols=107 Identities=20% Similarity=0.241 Sum_probs=56.3
Q ss_pred cCccEEEEeCCCCccCCCCcCCCCCCCcEEecccccccccccccChHHHhCCCCccEEEecCCCCCCC-CccccCCCCCc
Q 040933 182 KLYTSIVLRDIKTNVLPDRVLPECPQLKLFSVRADHQESSSLTIPNNFFEKMIQVRVINLTYMNLLPL-PSSLGLLSNLR 260 (298)
Q Consensus 182 ~~~~~l~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~l~~~~i~~l-P~~i~~L~~L~ 260 (298)
.+++.+.+.+|.+..+++..+..+++|+.|.+++ +.+..++...|..+++|++|++++|.++.+ |..++.+++|+
T Consensus 299 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~----N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 374 (455)
T 3v47_A 299 TDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQ----NFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLK 374 (455)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS----SCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCC
T ss_pred CCCCEEECCCCcccccChhHhcCcccCCEEECCC----CccCCcChhHhcCcccCCEEECCCCcccccChhhcccccccc
Confidence 3455555555555554444345555555555554 334444444445555555555555555553 44555555555
Q ss_pred EeecCCCCCCC-Cc-ccCCCCCCCEEeecCCCCC
Q 040933 261 TLSLCYCKLLD-IS-VTGELKKLEILCLRGSDIQ 292 (298)
Q Consensus 261 ~L~l~~~~l~~-p~-~i~~L~~L~~L~l~~~~l~ 292 (298)
+|++++|.++. |. .++.+++|++|++++|++.
T Consensus 375 ~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 408 (455)
T 3v47_A 375 ELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 408 (455)
T ss_dssp EEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred EEECCCCccccCCHhHhccCCcccEEEccCCCcc
Confidence 55555555555 32 3455555555555555443
No 64
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.20 E-value=7e-11 Score=109.98 Aligned_cols=111 Identities=23% Similarity=0.269 Sum_probs=83.2
Q ss_pred ccCccEEEEeCCCCccCCCCcCCCCCCCcEEecccccccccccccChHHHhCCCCccEEEecCCCCCCCCcc-ccCCCCC
Q 040933 181 VKLYTSIVLRDIKTNVLPDRVLPECPQLKLFSVRADHQESSSLTIPNNFFEKMIQVRVINLTYMNLLPLPSS-LGLLSNL 259 (298)
Q Consensus 181 ~~~~~~l~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~l~~~~i~~lP~~-i~~L~~L 259 (298)
+..++.+.+.+|.+..+++..+..+++|++|.+++ +.+..+++..|..+++|++|++++|.++.+|+. ++.+.+|
T Consensus 25 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~----n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 100 (549)
T 2z81_A 25 TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKS----SRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSL 100 (549)
T ss_dssp CTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTT----SCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTC
T ss_pred CCCccEEECcCCccCccChhhhhcCCcccEEECCC----CCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCC
Confidence 46788888888888777665567788888888887 456666655567888888888888888777654 7888888
Q ss_pred cEeecCCCCCCC---CcccCCCCCCCEEeecCCC-CCCCC
Q 040933 260 RTLSLCYCKLLD---ISVTGELKKLEILCLRGSD-IQQLP 295 (298)
Q Consensus 260 ~~L~l~~~~l~~---p~~i~~L~~L~~L~l~~~~-l~~lP 295 (298)
++|++++|.+.. |..++++++|++|++++|+ +..+|
T Consensus 101 ~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~ 140 (549)
T 2z81_A 101 KYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIR 140 (549)
T ss_dssp CEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEEC
T ss_pred cEEECCCCcccccchhhhhhccCCccEEECCCCccccccC
Confidence 888888887763 5677788888888888775 55555
No 65
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.19 E-value=4.9e-11 Score=108.62 Aligned_cols=113 Identities=20% Similarity=0.273 Sum_probs=67.0
Q ss_pred ccCccEEEEeCCCCccCCCCcCCCCCCCcEEecccccccccccccChHHHhCCCCccEEEecCCCCCCCC----------
Q 040933 181 VKLYTSIVLRDIKTNVLPDRVLPECPQLKLFSVRADHQESSSLTIPNNFFEKMIQVRVINLTYMNLLPLP---------- 250 (298)
Q Consensus 181 ~~~~~~l~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~l~~~~i~~lP---------- 250 (298)
..+++.|.+.+|.+..++...+..+++|+.|.+.+ ++.+..++...|..+++|++|++++|+++.+|
T Consensus 146 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~---~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~ 222 (452)
T 3zyi_A 146 LSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGE---LKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEE 222 (452)
T ss_dssp CTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCC---CTTCCEECTTTTTTCTTCCEEECTTSCCSSCCCCTTCTTCCE
T ss_pred cCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCC---CCCccccChhhccCCCCCCEEECCCCcccccccccccccccE
Confidence 35667777777777666665556666666666665 45555555555566666666666655555544
Q ss_pred -------------ccccCCCCCcEeecCCCCCCC--CcccCCCCCCCEEeecCCCCCCCCC
Q 040933 251 -------------SSLGLLSNLRTLSLCYCKLLD--ISVTGELKKLEILCLRGSDIQQLPV 296 (298)
Q Consensus 251 -------------~~i~~L~~L~~L~l~~~~l~~--p~~i~~L~~L~~L~l~~~~l~~lP~ 296 (298)
..++.+.+|++|++++|.+.. |..+..+++|++|++++|++..+|.
T Consensus 223 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 283 (452)
T 3zyi_A 223 LEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPH 283 (452)
T ss_dssp EECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred EECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccCh
Confidence 344455555555555555444 4455566666666666666666654
No 66
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.19 E-value=5.8e-11 Score=108.77 Aligned_cols=109 Identities=17% Similarity=0.208 Sum_probs=63.3
Q ss_pred ccCccEEEEeCCCCccCCCCcCCCCCCCcEEecccccccccccccChHHHhCCCCccEEEecCCCCCCCCcc-ccCCCCC
Q 040933 181 VKLYTSIVLRDIKTNVLPDRVLPECPQLKLFSVRADHQESSSLTIPNNFFEKMIQVRVINLTYMNLLPLPSS-LGLLSNL 259 (298)
Q Consensus 181 ~~~~~~l~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~l~~~~i~~lP~~-i~~L~~L 259 (298)
+..++.|.+.+|.+..++...|..+++|++|.+.+ +.+..+++..|..+++|++|++++|.++.+|.. ++.+.+|
T Consensus 31 ~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~----n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 106 (477)
T 2id5_A 31 PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNE----NIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNL 106 (477)
T ss_dssp CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTT----SCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTC
T ss_pred CCCCcEEECCCCccceECHhHccCCCCCCEEECCC----CccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCC
Confidence 45666677777766666555556666666666665 344444333446666666666666666665533 4556666
Q ss_pred cEeecCCCCCCC--CcccCCCCCCCEEeecCCCCCC
Q 040933 260 RTLSLCYCKLLD--ISVTGELKKLEILCLRGSDIQQ 293 (298)
Q Consensus 260 ~~L~l~~~~l~~--p~~i~~L~~L~~L~l~~~~l~~ 293 (298)
++|++++|.+.. |..++++++|++|++++|.+..
T Consensus 107 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~ 142 (477)
T 2id5_A 107 TKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVY 142 (477)
T ss_dssp CEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCE
T ss_pred CEEECCCCccccCChhHccccccCCEEECCCCccce
Confidence 666666665554 4445555555555555554443
No 67
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.18 E-value=1.8e-11 Score=106.13 Aligned_cols=111 Identities=21% Similarity=0.310 Sum_probs=72.6
Q ss_pred cCccEEEEeCCCCcc---CCCCcCCCCCCCcEEecccccccccccccChHHHhCCCCccEEEecCCCCC-CCCccccCCC
Q 040933 182 KLYTSIVLRDIKTNV---LPDRVLPECPQLKLFSVRADHQESSSLTIPNNFFEKMIQVRVINLTYMNLL-PLPSSLGLLS 257 (298)
Q Consensus 182 ~~~~~l~l~~~~~~~---l~~~~~~~~~~L~~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~l~~~~i~-~lP~~i~~L~ 257 (298)
..++.+.+.++.+.. +|.. +..+++|++|.+.+. +.....+|..+ ..+++|++|++++|.+. .+|..++.+.
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~-l~~l~~L~~L~L~~~--n~l~~~~p~~l-~~l~~L~~L~Ls~n~l~~~~p~~~~~l~ 125 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSS-LANLPYLNFLYIGGI--NNLVGPIPPAI-AKLTQLHYLYITHTNVSGAIPDFLSQIK 125 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGG-GGGCTTCSEEEEEEE--TTEESCCCGGG-GGCTTCSEEEEEEECCEEECCGGGGGCT
T ss_pred ceEEEEECCCCCccCCcccChh-HhCCCCCCeeeCCCC--CcccccCChhH-hcCCCCCEEECcCCeeCCcCCHHHhCCC
Confidence 467777777777763 4443 466777777777630 22333455554 67777777777777776 4676777777
Q ss_pred CCcEeecCCCCCCC--CcccCCCCCCCEEeecCCCCC-CCCC
Q 040933 258 NLRTLSLCYCKLLD--ISVTGELKKLEILCLRGSDIQ-QLPV 296 (298)
Q Consensus 258 ~L~~L~l~~~~l~~--p~~i~~L~~L~~L~l~~~~l~-~lP~ 296 (298)
+|++|++++|.+.. |..++++++|++|++++|++. .+|.
T Consensus 126 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~ 167 (313)
T 1ogq_A 126 TLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPD 167 (313)
T ss_dssp TCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCG
T ss_pred CCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCH
Confidence 77777777777663 666777777777777777665 4553
No 68
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.18 E-value=7.8e-11 Score=111.02 Aligned_cols=112 Identities=13% Similarity=0.118 Sum_probs=94.7
Q ss_pred hhccCccEEEEeCCCCccCCCCcCCCCCCCcEEecccccccccccccChHHHhCCCCccEEEecCCCCCCC-CccccCCC
Q 040933 179 NAVKLYTSIVLRDIKTNVLPDRVLPECPQLKLFSVRADHQESSSLTIPNNFFEKMIQVRVINLTYMNLLPL-PSSLGLLS 257 (298)
Q Consensus 179 ~~~~~~~~l~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~l~~~~i~~l-P~~i~~L~ 257 (298)
..+..++.+.+.+|.+..+++..+..+++|++|.+++ +.+..+++..|..+++|++|++++|.+..+ |..++.+.
T Consensus 30 ~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~----n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 105 (606)
T 3t6q_A 30 TLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTR----CQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPK 105 (606)
T ss_dssp TSCTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTT----CCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCT
T ss_pred CCCCcCcEEEccCCccCcCChhHhccCccceEEECCC----CccceeChhhccCccccCeeeCCCCcccccChhhhcccc
Confidence 3456899999999999988777778999999999988 556666555568999999999999988875 77889999
Q ss_pred CCcEeecCCCCCCC--CcccCCCCCCCEEeecCCCCCCC
Q 040933 258 NLRTLSLCYCKLLD--ISVTGELKKLEILCLRGSDIQQL 294 (298)
Q Consensus 258 ~L~~L~l~~~~l~~--p~~i~~L~~L~~L~l~~~~l~~l 294 (298)
+|++|++++|.+.. |..++++++|++|++++|++..+
T Consensus 106 ~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~ 144 (606)
T 3t6q_A 106 ALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSI 144 (606)
T ss_dssp TCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCC
T ss_pred cccEeeccccCcccCCcchhccCCcccEEECCCCccccc
Confidence 99999999999888 67888999999999999988776
No 69
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.18 E-value=6.5e-11 Score=107.81 Aligned_cols=104 Identities=17% Similarity=0.139 Sum_probs=57.4
Q ss_pred ccCccEEEEeCCCCccCCCCcCCCCCCCcEEecccccccccccccChHHHhCCCCccEEEecCCCCCCCCcc-ccCCCCC
Q 040933 181 VKLYTSIVLRDIKTNVLPDRVLPECPQLKLFSVRADHQESSSLTIPNNFFEKMIQVRVINLTYMNLLPLPSS-LGLLSNL 259 (298)
Q Consensus 181 ~~~~~~l~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~l~~~~i~~lP~~-i~~L~~L 259 (298)
+..++.|.+.+|.+..++...|..+++|+.|.+++ +.+..++...|..+++|++|+|++|.++.+|.. ++.+.+|
T Consensus 74 ~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~----n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 149 (452)
T 3zyi_A 74 PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGR----NSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKL 149 (452)
T ss_dssp CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCS----SCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTC
T ss_pred CCCccEEECcCCcCceECHHHcCCCCCCCEEECCC----CccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCC
Confidence 35566666666666666555556666666666665 344455544455666666666666666655433 5556666
Q ss_pred cEeecCCCCCCC-C-cccCCCCCCCEEeecC
Q 040933 260 RTLSLCYCKLLD-I-SVTGELKKLEILCLRG 288 (298)
Q Consensus 260 ~~L~l~~~~l~~-p-~~i~~L~~L~~L~l~~ 288 (298)
++|++++|.+.. | ..+.++++|++|++++
T Consensus 150 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~ 180 (452)
T 3zyi_A 150 RELWLRNNPIESIPSYAFNRVPSLMRLDLGE 180 (452)
T ss_dssp CEEECCSCCCCEECTTTTTTCTTCCEEECCC
T ss_pred CEEECCCCCcceeCHhHHhcCCcccEEeCCC
Confidence 666666655554 2 2333333333333333
No 70
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.18 E-value=1.9e-10 Score=98.69 Aligned_cols=106 Identities=25% Similarity=0.282 Sum_probs=65.5
Q ss_pred hccCccEEEEeCCCCccCCCCcCCCCCCCcEEecccccccccccccChHHHhCCCCccEEEecCCCCCCCCccccCCCCC
Q 040933 180 AVKLYTSIVLRDIKTNVLPDRVLPECPQLKLFSVRADHQESSSLTIPNNFFEKMIQVRVINLTYMNLLPLPSSLGLLSNL 259 (298)
Q Consensus 180 ~~~~~~~l~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~l~~~~i~~lP~~i~~L~~L 259 (298)
...+++.|.+.+|.+..++. +..+++|+.|.+.+ +.+..++. +..+++|++|++++|.++.+ ..++.+++|
T Consensus 88 ~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~----n~i~~~~~--l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L 158 (291)
T 1h6t_A 88 NLKNLGWLFLDENKVKDLSS--LKDLKKLKSLSLEH----NGISDING--LVHLPQLESLYLGNNKITDI-TVLSRLTKL 158 (291)
T ss_dssp TCTTCCEEECCSSCCCCGGG--GTTCTTCCEEECTT----SCCCCCGG--GGGCTTCCEEECCSSCCCCC-GGGGGCTTC
T ss_pred cCCCCCEEECCCCcCCCChh--hccCCCCCEEECCC----CcCCCChh--hcCCCCCCEEEccCCcCCcc-hhhccCCCC
Confidence 34455556666555555544 25566666666665 34444432 36666677777777766666 366677777
Q ss_pred cEeecCCCCCCC-CcccCCCCCCCEEeecCCCCCCCC
Q 040933 260 RTLSLCYCKLLD-ISVTGELKKLEILCLRGSDIQQLP 295 (298)
Q Consensus 260 ~~L~l~~~~l~~-p~~i~~L~~L~~L~l~~~~l~~lP 295 (298)
++|++++|.+.. +. ++.+++|++|++++|++..+|
T Consensus 159 ~~L~L~~N~l~~~~~-l~~l~~L~~L~L~~N~i~~l~ 194 (291)
T 1h6t_A 159 DTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDLR 194 (291)
T ss_dssp SEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBCG
T ss_pred CEEEccCCccccchh-hcCCCccCEEECCCCcCCCCh
Confidence 777777777666 33 677777777777777666554
No 71
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.18 E-value=4.6e-11 Score=105.21 Aligned_cols=111 Identities=16% Similarity=0.178 Sum_probs=95.5
Q ss_pred hccCccEEEEeCCCCccCCCCcCCCCCCCcEEecccccccccccccChHHHhCCCCccEEEecCCCCCCCCc--cccCCC
Q 040933 180 AVKLYTSIVLRDIKTNVLPDRVLPECPQLKLFSVRADHQESSSLTIPNNFFEKMIQVRVINLTYMNLLPLPS--SLGLLS 257 (298)
Q Consensus 180 ~~~~~~~l~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~l~~~~i~~lP~--~i~~L~ 257 (298)
...+++.+.+.+|.+..+++..+..+++|++|.+++ +.+..+|...|..+++|++|++++|.++.+|. .++.++
T Consensus 74 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~----n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~ 149 (353)
T 2z80_A 74 RCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSY----NYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLT 149 (353)
T ss_dssp TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS----SCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCT
T ss_pred cCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCC----CcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCC
Confidence 457899999999999988776678899999999987 67778888877999999999999999999886 688999
Q ss_pred CCcEeecCCCC-CCC--CcccCCCCCCCEEeecCCCCCCC
Q 040933 258 NLRTLSLCYCK-LLD--ISVTGELKKLEILCLRGSDIQQL 294 (298)
Q Consensus 258 ~L~~L~l~~~~-l~~--p~~i~~L~~L~~L~l~~~~l~~l 294 (298)
+|++|++++|. +.. |..++++++|++|++++|++..+
T Consensus 150 ~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~ 189 (353)
T 2z80_A 150 KLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSY 189 (353)
T ss_dssp TCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEE
T ss_pred CCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCcc
Confidence 99999999985 666 56788999999999999887755
No 72
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.17 E-value=1e-10 Score=106.16 Aligned_cols=105 Identities=15% Similarity=0.160 Sum_probs=69.4
Q ss_pred hccCccEEEEeCCCCccCCCCcCCCCCCCcEEecccccccccccccChHHHhCCCCccEEEecCCCCCCCCc-cccCCCC
Q 040933 180 AVKLYTSIVLRDIKTNVLPDRVLPECPQLKLFSVRADHQESSSLTIPNNFFEKMIQVRVINLTYMNLLPLPS-SLGLLSN 258 (298)
Q Consensus 180 ~~~~~~~l~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~l~~~~i~~lP~-~i~~L~~ 258 (298)
.+..++.+.+.+|.+..++...|..+++|+.|.+++ +.+..++...|..+++|++|++++|.++.+|. .+..+.+
T Consensus 62 ~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~----n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 137 (440)
T 3zyj_A 62 ISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSR----NHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSK 137 (440)
T ss_dssp CCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCS----SCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSS
T ss_pred CCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCC----CcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhcccc
Confidence 346677778887777777766667777777777776 45666666666777777777777777777654 4667777
Q ss_pred CcEeecCCCCCCC-C-cccCCCCCCCEEeecC
Q 040933 259 LRTLSLCYCKLLD-I-SVTGELKKLEILCLRG 288 (298)
Q Consensus 259 L~~L~l~~~~l~~-p-~~i~~L~~L~~L~l~~ 288 (298)
|++|++++|.+.. | ..+.++++|++|++++
T Consensus 138 L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~ 169 (440)
T 3zyj_A 138 LKELWLRNNPIESIPSYAFNRIPSLRRLDLGE 169 (440)
T ss_dssp CCEEECCSCCCCEECTTTTTTCTTCCEEECCC
T ss_pred CceeeCCCCcccccCHHHhhhCcccCEeCCCC
Confidence 7777777776655 3 2344444444444444
No 73
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.17 E-value=2.2e-10 Score=99.02 Aligned_cols=104 Identities=16% Similarity=0.241 Sum_probs=56.3
Q ss_pred cCccEEEEeCCCCccCCCCcCCCCCCCcEEecccccccccccccChHHHhCCCCccEEEecCCCCCCCCccccCCCCCcE
Q 040933 182 KLYTSIVLRDIKTNVLPDRVLPECPQLKLFSVRADHQESSSLTIPNNFFEKMIQVRVINLTYMNLLPLPSSLGLLSNLRT 261 (298)
Q Consensus 182 ~~~~~l~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~l~~~~i~~lP~~i~~L~~L~~ 261 (298)
.+++.|.+.+|.+..++. +..+++|+.|.+++ +.+..++. +..+++|++|++++|.++.+|. ++.+.+|++
T Consensus 85 ~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~----n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~ 155 (308)
T 1h6u_A 85 TKITELELSGNPLKNVSA--IAGLQSIKTLDLTS----TQITDVTP--LAGLSNLQVLYLDLNQITNISP-LAGLTNLQY 155 (308)
T ss_dssp CSCCEEECCSCCCSCCGG--GTTCTTCCEEECTT----SCCCCCGG--GTTCTTCCEEECCSSCCCCCGG-GGGCTTCCE
T ss_pred CCCCEEEccCCcCCCchh--hcCCCCCCEEECCC----CCCCCchh--hcCCCCCCEEECCCCccCcCcc-ccCCCCccE
Confidence 444555555555444432 24455555555554 33344433 3555566666666665555543 556666666
Q ss_pred eecCCCCCCC-CcccCCCCCCCEEeecCCCCCCCC
Q 040933 262 LSLCYCKLLD-ISVTGELKKLEILCLRGSDIQQLP 295 (298)
Q Consensus 262 L~l~~~~l~~-p~~i~~L~~L~~L~l~~~~l~~lP 295 (298)
|++++|.+.. +. ++.+++|++|++++|++..+|
T Consensus 156 L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~ 189 (308)
T 1h6u_A 156 LSIGNAQVSDLTP-LANLSKLTTLKADDNKISDIS 189 (308)
T ss_dssp EECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCG
T ss_pred EEccCCcCCCChh-hcCCCCCCEEECCCCccCcCh
Confidence 6666666555 33 566666666666666655544
No 74
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.17 E-value=1.5e-10 Score=100.85 Aligned_cols=110 Identities=16% Similarity=0.273 Sum_probs=85.4
Q ss_pred hccCccEEEEeCCCCccCCCCcCCCCCCCcEEecccccccccccccChHHHhCCCCccEEEecCCCCCCCC-ccccCCCC
Q 040933 180 AVKLYTSIVLRDIKTNVLPDRVLPECPQLKLFSVRADHQESSSLTIPNNFFEKMIQVRVINLTYMNLLPLP-SSLGLLSN 258 (298)
Q Consensus 180 ~~~~~~~l~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~l~~~~i~~lP-~~i~~L~~ 258 (298)
...+++.+.+.+|.+..+|... .++|+.|.+.+ +.+..++...|..+++|++|++++|.++.++ ..++.+++
T Consensus 169 ~l~~L~~L~l~~n~l~~l~~~~---~~~L~~L~l~~----n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 241 (330)
T 1xku_A 169 GMKKLSYIRIADTNITTIPQGL---PPSLTELHLDG----NKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPH 241 (330)
T ss_dssp GCTTCCEEECCSSCCCSCCSSC---CTTCSEEECTT----SCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTT
T ss_pred CCCCcCEEECCCCccccCCccc---cccCCEEECCC----CcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCC
Confidence 3467778888888887777642 27788888877 4566665555688888888888888888764 46888888
Q ss_pred CcEeecCCCCCCC-CcccCCCCCCCEEeecCCCCCCCCC
Q 040933 259 LRTLSLCYCKLLD-ISVTGELKKLEILCLRGSDIQQLPV 296 (298)
Q Consensus 259 L~~L~l~~~~l~~-p~~i~~L~~L~~L~l~~~~l~~lP~ 296 (298)
|++|++++|.+.. |..++.+++|++|++++|++..+|.
T Consensus 242 L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~i~~~~~ 280 (330)
T 1xku_A 242 LRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGS 280 (330)
T ss_dssp CCEEECCSSCCSSCCTTTTTCSSCCEEECCSSCCCCCCT
T ss_pred CCEEECCCCcCccCChhhccCCCcCEEECCCCcCCccCh
Confidence 8888888888888 8888888888888888888888775
No 75
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.16 E-value=1.1e-10 Score=110.80 Aligned_cols=112 Identities=17% Similarity=0.167 Sum_probs=85.4
Q ss_pred cCccEEEEeCCCCccCCCCcCCCCC-------CCcEEecccccccccccccChHHH-hCCCCccEEEecCCCCCCCCccc
Q 040933 182 KLYTSIVLRDIKTNVLPDRVLPECP-------QLKLFSVRADHQESSSLTIPNNFF-EKMIQVRVINLTYMNLLPLPSSL 253 (298)
Q Consensus 182 ~~~~~l~l~~~~~~~l~~~~~~~~~-------~L~~L~l~~~~~~~~~~~lp~~~~-~~l~~Lr~L~l~~~~i~~lP~~i 253 (298)
..++.+.+.+|.+..+|...+.... +|+.|.+++ +.+..+|..++ ..+++|+.|++++|.++.+|..+
T Consensus 457 ~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~----N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~ip~~~ 532 (636)
T 4eco_A 457 SPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRF----NKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQP 532 (636)
T ss_dssp CCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCS----SCCCBCCGGGSTTTCTTCCEEECCSSCCSSCCCGG
T ss_pred CCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcC----CcCCccChhhhhccCCCcCEEECCCCCCCCcChhh
Confidence 4566666666666666655433322 777888776 45667887764 48889999999999988899889
Q ss_pred cCCCCCcEeecC------CCCCCC--CcccCCCCCCCEEeecCCCCCCCCCC
Q 040933 254 GLLSNLRTLSLC------YCKLLD--ISVTGELKKLEILCLRGSDIQQLPVE 297 (298)
Q Consensus 254 ~~L~~L~~L~l~------~~~l~~--p~~i~~L~~L~~L~l~~~~l~~lP~~ 297 (298)
+.+++|++|+++ +|.+.. |..++++++|++|++++|++..+|..
T Consensus 533 ~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ip~~ 584 (636)
T 4eco_A 533 LNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEK 584 (636)
T ss_dssp GGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCCBCCSC
T ss_pred hcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcCCccCHh
Confidence 999999999994 455444 88899999999999999988888875
No 76
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.16 E-value=8.6e-11 Score=107.62 Aligned_cols=111 Identities=16% Similarity=0.228 Sum_probs=71.4
Q ss_pred ccCccEEEEeCCCCccCCCCcCCCCCCCcEEecccccccccccccChHHHhCCCCccEEEecCCCCCCC-CccccCCCCC
Q 040933 181 VKLYTSIVLRDIKTNVLPDRVLPECPQLKLFSVRADHQESSSLTIPNNFFEKMIQVRVINLTYMNLLPL-PSSLGLLSNL 259 (298)
Q Consensus 181 ~~~~~~l~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~l~~~~i~~l-P~~i~~L~~L 259 (298)
..+++.|.+.+|.+..+.+..|..+++|++|.+.+ +.+..+|...|..+++|++|++++|.+..+ |..++.+.+|
T Consensus 55 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~----n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L 130 (477)
T 2id5_A 55 FPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRS----NRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNL 130 (477)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS----SCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred CCCCCEEECCCCccCEeChhhhhCCccCCEEECCC----CcCCccCcccccCCCCCCEEECCCCccccCChhHccccccC
Confidence 35666777777766666555556667777777665 455566666556667777777777666653 4556666666
Q ss_pred cEeecCCCCCCC--CcccCCCCCCCEEeecCCCCCCCC
Q 040933 260 RTLSLCYCKLLD--ISVTGELKKLEILCLRGSDIQQLP 295 (298)
Q Consensus 260 ~~L~l~~~~l~~--p~~i~~L~~L~~L~l~~~~l~~lP 295 (298)
++|++++|.+.. |..++.+++|++|++++|++..+|
T Consensus 131 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 168 (477)
T 2id5_A 131 KSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIP 168 (477)
T ss_dssp CEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCC
T ss_pred CEEECCCCccceeChhhccCCCCCCEEECCCCcCcccC
Confidence 666666666655 456666666666666666665554
No 77
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.16 E-value=5.7e-11 Score=102.43 Aligned_cols=110 Identities=16% Similarity=0.258 Sum_probs=81.9
Q ss_pred hccCccEEEEeCCCCccCCCCcCCCCCCCcEEecccccccccccc--cChHHHhCCCCccEEEecCCCCCCC-CccccCC
Q 040933 180 AVKLYTSIVLRDIKTNVLPDRVLPECPQLKLFSVRADHQESSSLT--IPNNFFEKMIQVRVINLTYMNLLPL-PSSLGLL 256 (298)
Q Consensus 180 ~~~~~~~l~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~--lp~~~~~~l~~Lr~L~l~~~~i~~l-P~~i~~L 256 (298)
...+++.+.+.+|.+.......+..+++|+.|.+.+ +.+.. +|.. |..+++|++|++++|.++.+ |..++.+
T Consensus 124 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~----n~l~~~~~~~~-~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 198 (306)
T 2z66_A 124 SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAG----NSFQENFLPDI-FTELRNLTFLDLSQCQLEQLSPTAFNSL 198 (306)
T ss_dssp TCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTT----CEEGGGEECSC-CTTCTTCCEEECTTSCCCEECTTTTTTC
T ss_pred hccCCCEEECCCCcCCccchhhcccCcCCCEEECCC----CccccccchhH-HhhCcCCCEEECCCCCcCCcCHHHhcCC
Confidence 345677788877777766665567778888888877 33332 4444 47888888888888888875 6678888
Q ss_pred CCCcEeecCCCCCCC--CcccCCCCCCCEEeecCCCCCCC
Q 040933 257 SNLRTLSLCYCKLLD--ISVTGELKKLEILCLRGSDIQQL 294 (298)
Q Consensus 257 ~~L~~L~l~~~~l~~--p~~i~~L~~L~~L~l~~~~l~~l 294 (298)
++|++|++++|.+.. +..+..+++|++|++++|++...
T Consensus 199 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 238 (306)
T 2z66_A 199 SSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTS 238 (306)
T ss_dssp TTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBC
T ss_pred CCCCEEECCCCccCccChhhccCcccCCEeECCCCCCccc
Confidence 888888888888777 44678888888888888877654
No 78
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.15 E-value=1.3e-10 Score=108.67 Aligned_cols=108 Identities=15% Similarity=0.173 Sum_probs=95.5
Q ss_pred hccCccEEEEeCCCCccCCCCcCCCCCCCcEEecccccccccccccChHHHhCCCCccEEEecCCCCCCCCccccCCCCC
Q 040933 180 AVKLYTSIVLRDIKTNVLPDRVLPECPQLKLFSVRADHQESSSLTIPNNFFEKMIQVRVINLTYMNLLPLPSSLGLLSNL 259 (298)
Q Consensus 180 ~~~~~~~l~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~l~~~~i~~lP~~i~~L~~L 259 (298)
.+..++.+.+.+|.+..+++..+..+++|++|.+++ +.+..+++..|..+++|++|++++|.++.+|.. .+.+|
T Consensus 50 ~~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~----N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L 123 (562)
T 3a79_B 50 LPPRTKALSLSQNSISELRMPDISFLSELRVLRLSH----NRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCC--PMASL 123 (562)
T ss_dssp SCTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCS----CCCCEECTTTTTTCTTCCEEECTTSCCCEECSC--CCTTC
T ss_pred CCCCcCEEECCCCCccccChhhhccCCCccEEECCC----CCCCcCCHHHhCCCCCCCEEECCCCcCCccCcc--ccccC
Confidence 347899999999999999877779999999999998 567777666679999999999999999999977 89999
Q ss_pred cEeecCCCCCCC---CcccCCCCCCCEEeecCCCCCC
Q 040933 260 RTLSLCYCKLLD---ISVTGELKKLEILCLRGSDIQQ 293 (298)
Q Consensus 260 ~~L~l~~~~l~~---p~~i~~L~~L~~L~l~~~~l~~ 293 (298)
++|++++|.+.. |..++++++|++|++++|++..
T Consensus 124 ~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~ 160 (562)
T 3a79_B 124 RHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ 160 (562)
T ss_dssp SEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCT
T ss_pred CEEECCCCCccccCchHhhcccCcccEEecCCCcccc
Confidence 999999999877 4789999999999999997764
No 79
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.15 E-value=5.3e-11 Score=112.21 Aligned_cols=113 Identities=14% Similarity=0.179 Sum_probs=99.8
Q ss_pred hccCccEEEEeCCCCccCCCCcCCCCCCCcEEecccccccccccccChHHHhCCCCccEEEecCCCCCCCCc-cccCCCC
Q 040933 180 AVKLYTSIVLRDIKTNVLPDRVLPECPQLKLFSVRADHQESSSLTIPNNFFEKMIQVRVINLTYMNLLPLPS-SLGLLSN 258 (298)
Q Consensus 180 ~~~~~~~l~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~l~~~~i~~lP~-~i~~L~~ 258 (298)
....++.+.+.++.+..+|..++..+++|++|.+.+ +.+..+++..|..+++|++|++++|.+..+|+ .++.+++
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~----n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 124 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLND----LQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPL 124 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTT----SCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCC----CCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCC
Confidence 346789999999999999988778899999999998 56777777667999999999999999999864 5799999
Q ss_pred CcEeecCCCCCCC-Ccc-cCCCCCCCEEeecCCCCCCCCC
Q 040933 259 LRTLSLCYCKLLD-ISV-TGELKKLEILCLRGSDIQQLPV 296 (298)
Q Consensus 259 L~~L~l~~~~l~~-p~~-i~~L~~L~~L~l~~~~l~~lP~ 296 (298)
|++|++++|.+.. |.. ++++++|++|++++|++..+|.
T Consensus 125 L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~ 164 (597)
T 3oja_B 125 LTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIED 164 (597)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCT
T ss_pred CCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCCh
Confidence 9999999999999 665 6899999999999999887764
No 80
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.14 E-value=7.5e-11 Score=109.16 Aligned_cols=106 Identities=13% Similarity=0.181 Sum_probs=91.9
Q ss_pred ccCccEEEEeCCCCccCCCCcCCCCCCCcEEecccccccccccccChHHHhCCCCccEEEecCCCCCCCCccccCCCCCc
Q 040933 181 VKLYTSIVLRDIKTNVLPDRVLPECPQLKLFSVRADHQESSSLTIPNNFFEKMIQVRVINLTYMNLLPLPSSLGLLSNLR 260 (298)
Q Consensus 181 ~~~~~~l~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~l~~~~i~~lP~~i~~L~~L~ 260 (298)
+.+++++.+++|.+..+++..+..+++|++|.+++ +.+..+++..|..+++|++|++++|.++.+|.. .+.+|+
T Consensus 20 ~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~----n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~ 93 (520)
T 2z7x_B 20 SQKTTILNISQNYISELWTSDILSLSKLRILIISH----NRIQYLDISVFKFNQELEYLDLSHNKLVKISCH--PTVNLK 93 (520)
T ss_dssp CTTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCS----SCCCEEEGGGGTTCTTCCEEECCSSCCCEEECC--CCCCCS
T ss_pred cccccEEECCCCcccccChhhccccccccEEecCC----CccCCcChHHhhcccCCCEEecCCCceeecCcc--ccCCcc
Confidence 37899999999999988866678899999999998 566677555669999999999999999999876 899999
Q ss_pred EeecCCCCCCC---CcccCCCCCCCEEeecCCCCC
Q 040933 261 TLSLCYCKLLD---ISVTGELKKLEILCLRGSDIQ 292 (298)
Q Consensus 261 ~L~l~~~~l~~---p~~i~~L~~L~~L~l~~~~l~ 292 (298)
+|++++|.+.. |..++++++|++|++++|++.
T Consensus 94 ~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~ 128 (520)
T 2z7x_B 94 HLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLE 128 (520)
T ss_dssp EEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCC
T ss_pred EEeccCCccccccchhhhccCCcceEEEecCcccc
Confidence 99999999775 688999999999999998765
No 81
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.14 E-value=2.1e-10 Score=112.10 Aligned_cols=114 Identities=15% Similarity=0.208 Sum_probs=92.9
Q ss_pred ccCccEEEEeCCCCccCCCCcCCCC-------CCCcEEecccccccccccccChHHH-hCCCCccEEEecCCCCCCCCcc
Q 040933 181 VKLYTSIVLRDIKTNVLPDRVLPEC-------PQLKLFSVRADHQESSSLTIPNNFF-EKMIQVRVINLTYMNLLPLPSS 252 (298)
Q Consensus 181 ~~~~~~l~l~~~~~~~l~~~~~~~~-------~~L~~L~l~~~~~~~~~~~lp~~~~-~~l~~Lr~L~l~~~~i~~lP~~ 252 (298)
...++.|.+.+|.+..+|..++... ++|+.|.+++ +.+..+|..++ ..+++|+.|++++|.++.+|..
T Consensus 696 l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~----N~L~~lp~~l~~~~l~~L~~L~Ls~N~L~~lp~~ 771 (876)
T 4ecn_A 696 GSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRF----NKLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQ 771 (876)
T ss_dssp TCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCS----SCCCCCCGGGSTTTCTTCCEEECCSSCCSSCCCG
T ss_pred CCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCC----CCCccchHHhhhccCCCcCEEEeCCCCCCccchh
Confidence 3567888888888887777654433 3888999887 56668888763 4899999999999999999999
Q ss_pred ccCCCCCcEeecCC------CCCCC--CcccCCCCCCCEEeecCCCCCCCCCCC
Q 040933 253 LGLLSNLRTLSLCY------CKLLD--ISVTGELKKLEILCLRGSDIQQLPVEL 298 (298)
Q Consensus 253 i~~L~~L~~L~l~~------~~l~~--p~~i~~L~~L~~L~l~~~~l~~lP~~i 298 (298)
++.+++|+.|++++ |.+.. |..++++++|+.|++++|++..+|..+
T Consensus 772 l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L~~Ip~~l 825 (876)
T 4ecn_A 772 PLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDEKL 825 (876)
T ss_dssp GGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCCBCCSCC
T ss_pred hhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCCCccCHhh
Confidence 99999999999976 66554 889999999999999999998898753
No 82
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.14 E-value=4e-11 Score=104.11 Aligned_cols=111 Identities=15% Similarity=0.125 Sum_probs=71.6
Q ss_pred cCccEEEEeCCCCccCCCCcCCCCCCCcEEecccccccccccccC-hHHHhCCCCccEEEecCCCCCCCCccccCCCCCc
Q 040933 182 KLYTSIVLRDIKTNVLPDRVLPECPQLKLFSVRADHQESSSLTIP-NNFFEKMIQVRVINLTYMNLLPLPSSLGLLSNLR 260 (298)
Q Consensus 182 ~~~~~l~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~lp-~~~~~~l~~Lr~L~l~~~~i~~lP~~i~~L~~L~ 260 (298)
..++.+.+.+|.+..+++..+..+++|+.|.+++ +.+..++ ..++..+++|++|++++|.++.+|. ...+.+|+
T Consensus 120 ~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~----N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~l~~L~ 194 (317)
T 3o53_A 120 QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKL----NEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG-QVVFAKLK 194 (317)
T ss_dssp SSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTT----SCCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC-CCCCTTCC
T ss_pred CCCCEEECCCCCCCCccchhhhccCCCCEEECCC----CCCCcccHHHHhhccCcCCEEECCCCcCccccc-ccccccCC
Confidence 4567777777777766655456667777777776 3444433 3333466777777777777766653 33466777
Q ss_pred EeecCCCCCCC-CcccCCCCCCCEEeecCCCCCCCCCC
Q 040933 261 TLSLCYCKLLD-ISVTGELKKLEILCLRGSDIQQLPVE 297 (298)
Q Consensus 261 ~L~l~~~~l~~-p~~i~~L~~L~~L~l~~~~l~~lP~~ 297 (298)
+|++++|.++. |..++.+++|++|++++|++..+|..
T Consensus 195 ~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~~l~~~ 232 (317)
T 3o53_A 195 TLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKA 232 (317)
T ss_dssp EEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTT
T ss_pred EEECCCCcCCcchhhhcccCcccEEECcCCcccchhhH
Confidence 77777777766 66677777777777777766666643
No 83
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.14 E-value=1.7e-10 Score=97.54 Aligned_cols=111 Identities=24% Similarity=0.217 Sum_probs=82.7
Q ss_pred CCCchhhccCccEEEEeCCCCccCCCCcCCCCCCCcEEecccccccccccccChHHHhCCCCccEEEecCCCCCCCCccc
Q 040933 174 EWSDENAVKLYTSIVLRDIKTNVLPDRVLPECPQLKLFSVRADHQESSSLTIPNNFFEKMIQVRVINLTYMNLLPLPSSL 253 (298)
Q Consensus 174 ~~~~~~~~~~~~~l~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~l~~~~i~~lP~~i 253 (298)
..+.......++.|.+.+|.+..++. +..+++|+.|.+++ +.+..+|.. .. ++|++|++++|.++.+| .+
T Consensus 55 ~l~~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~----N~l~~l~~~--~~-~~L~~L~L~~N~l~~~~-~l 124 (263)
T 1xeu_A 55 SLAGMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNR----NRLKNLNGI--PS-ACLSRLFLDNNELRDTD-SL 124 (263)
T ss_dssp CCTTGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCS----SCCSCCTTC--CC-SSCCEEECCSSCCSBSG-GG
T ss_pred cchHHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCC----CccCCcCcc--cc-CcccEEEccCCccCCCh-hh
Confidence 33444456678888888888877776 47788888888887 556666652 23 77888888888888775 58
Q ss_pred cCCCCCcEeecCCCCCCCCcccCCCCCCCEEeecCCCCCCC
Q 040933 254 GLLSNLRTLSLCYCKLLDISVTGELKKLEILCLRGSDIQQL 294 (298)
Q Consensus 254 ~~L~~L~~L~l~~~~l~~p~~i~~L~~L~~L~l~~~~l~~l 294 (298)
+.+.+|++|++++|.++..+.++.+++|++|++++|++..+
T Consensus 125 ~~l~~L~~L~Ls~N~i~~~~~l~~l~~L~~L~L~~N~i~~~ 165 (263)
T 1xeu_A 125 IHLKNLEILSIRNNKLKSIVMLGFLSKLEVLDLHGNEITNT 165 (263)
T ss_dssp TTCTTCCEEECTTSCCCBCGGGGGCTTCCEEECTTSCCCBC
T ss_pred cCcccccEEECCCCcCCCChHHccCCCCCEEECCCCcCcch
Confidence 88888888888888887733688888888888888877655
No 84
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.14 E-value=5.3e-11 Score=91.52 Aligned_cols=104 Identities=19% Similarity=0.190 Sum_probs=88.3
Q ss_pred hhccCccEEEEeCCCCccCCCCcCCCCCCCcEEecccccccccccccChHHHhCCCCccEEEecCCCCCCCC--ccccCC
Q 040933 179 NAVKLYTSIVLRDIKTNVLPDRVLPECPQLKLFSVRADHQESSSLTIPNNFFEKMIQVRVINLTYMNLLPLP--SSLGLL 256 (298)
Q Consensus 179 ~~~~~~~~l~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~l~~~~i~~lP--~~i~~L 256 (298)
....+++.+.+.+|.+..+ ..+..+++|++|.+++ +.+....+..+..+++|++|++++|.++.+| ..++.+
T Consensus 39 ~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~----n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l 112 (149)
T 2je0_A 39 DEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSD----NRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKL 112 (149)
T ss_dssp TTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCS----SCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGC
T ss_pred hhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCC----CcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhC
Confidence 3457899999999999888 3358899999999998 5566534445588999999999999999975 889999
Q ss_pred CCCcEeecCCCCCCC-Cc----ccCCCCCCCEEeecC
Q 040933 257 SNLRTLSLCYCKLLD-IS----VTGELKKLEILCLRG 288 (298)
Q Consensus 257 ~~L~~L~l~~~~l~~-p~----~i~~L~~L~~L~l~~ 288 (298)
++|++|++++|.++. |. .++.+++|++|++++
T Consensus 113 ~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 113 ENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp TTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred CCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 999999999999888 54 689999999999863
No 85
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.13 E-value=1.3e-10 Score=100.10 Aligned_cols=111 Identities=18% Similarity=0.169 Sum_probs=85.8
Q ss_pred hhccCccEEEEeCCCCccCCCCcCCCCCCCcEEeccccccccccccc---ChHHHhCCCCccEEEecCCCCCCCCccccC
Q 040933 179 NAVKLYTSIVLRDIKTNVLPDRVLPECPQLKLFSVRADHQESSSLTI---PNNFFEKMIQVRVINLTYMNLLPLPSSLGL 255 (298)
Q Consensus 179 ~~~~~~~~l~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~l---p~~~~~~l~~Lr~L~l~~~~i~~lP~~i~~ 255 (298)
..+.+++++.+.+|.+..++..++..+++|+.|.+.+ +.+..+ +..+ ..+++|++|++++|.+..+|..+..
T Consensus 25 ~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~----n~l~~~~~~~~~~-~~~~~L~~L~Ls~n~i~~l~~~~~~ 99 (306)
T 2z66_A 25 GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSS----NGLSFKGCCSQSD-FGTTSLKYLDLSFNGVITMSSNFLG 99 (306)
T ss_dssp CCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCS----SCCCEEEEEEHHH-HSCSCCCEEECCSCSEEEEEEEEET
T ss_pred CCCCCCCEEECCCCccCccCHhHhhccccCCEEECCC----CccCcccCccccc-ccccccCEEECCCCccccChhhcCC
Confidence 3457899999999999999988778999999999988 444433 4444 6788888888888888888777888
Q ss_pred CCCCcEeecCCCCCCC-C--cccCCCCCCCEEeecCCCCCCC
Q 040933 256 LSNLRTLSLCYCKLLD-I--SVTGELKKLEILCLRGSDIQQL 294 (298)
Q Consensus 256 L~~L~~L~l~~~~l~~-p--~~i~~L~~L~~L~l~~~~l~~l 294 (298)
+++|++|++++|.+.. + ..+.++++|++|++++|.+...
T Consensus 100 l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~ 141 (306)
T 2z66_A 100 LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVA 141 (306)
T ss_dssp CTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEEC
T ss_pred CCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCcc
Confidence 8888888888887666 3 4677777788888777765543
No 86
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.13 E-value=3.7e-10 Score=96.87 Aligned_cols=105 Identities=20% Similarity=0.285 Sum_probs=51.5
Q ss_pred ccCccEEEEeCCCCccCCCCcCCCCCCCcEEecccccccccccccChHHHhCCCCccEEEecCCCCCCCCccccCCCCCc
Q 040933 181 VKLYTSIVLRDIKTNVLPDRVLPECPQLKLFSVRADHQESSSLTIPNNFFEKMIQVRVINLTYMNLLPLPSSLGLLSNLR 260 (298)
Q Consensus 181 ~~~~~~l~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~l~~~~i~~lP~~i~~L~~L~ 260 (298)
..+++.|.+.+|.+..++. +..+++|+.|.+.+ +.+..++. +..+++|++|++++|.+..+| .++.+++|+
T Consensus 67 l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~----n~l~~~~~--l~~l~~L~~L~L~~n~i~~~~-~l~~l~~L~ 137 (291)
T 1h6t_A 67 LPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDE----NKVKDLSS--LKDLKKLKSLSLEHNGISDIN-GLVHLPQLE 137 (291)
T ss_dssp CTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCS----SCCCCGGG--GTTCTTCCEEECTTSCCCCCG-GGGGCTTCC
T ss_pred CCCCCEEEccCCccCCCcc--cccCCCCCEEECCC----CcCCCChh--hccCCCCCEEECCCCcCCCCh-hhcCCCCCC
Confidence 3445555555555544443 24555555555554 23333333 345555555555555555443 445555555
Q ss_pred EeecCCCCCCCCcccCCCCCCCEEeecCCCCCCC
Q 040933 261 TLSLCYCKLLDISVTGELKKLEILCLRGSDIQQL 294 (298)
Q Consensus 261 ~L~l~~~~l~~p~~i~~L~~L~~L~l~~~~l~~l 294 (298)
+|++++|.++....++.+++|++|++++|++..+
T Consensus 138 ~L~l~~n~l~~~~~l~~l~~L~~L~L~~N~l~~~ 171 (291)
T 1h6t_A 138 SLYLGNNKITDITVLSRLTKLDTLSLEDNQISDI 171 (291)
T ss_dssp EEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCC
T ss_pred EEEccCCcCCcchhhccCCCCCEEEccCCccccc
Confidence 5555555544433445555555555555544443
No 87
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.13 E-value=6.5e-11 Score=102.40 Aligned_cols=113 Identities=15% Similarity=0.151 Sum_probs=62.4
Q ss_pred ccCccEEEEeCCCCccCCCCcCCCCCCCcEEecccccc------------------------cccccccChH---HHhCC
Q 040933 181 VKLYTSIVLRDIKTNVLPDRVLPECPQLKLFSVRADHQ------------------------ESSSLTIPNN---FFEKM 233 (298)
Q Consensus 181 ~~~~~~l~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~------------------------~~~~~~lp~~---~~~~l 233 (298)
..+++.+.+.+|.+..++...+..+++|++|+++++.- .+.+..++.. ++..+
T Consensus 144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l 223 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAG 223 (310)
T ss_dssp CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHT
T ss_pred ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcC
Confidence 45777888888887777766566777777777776210 0111111111 23445
Q ss_pred CCccEEEecCCCCCCC-CccccCC---CCCcEeecCCCCCCC-CcccCCCCCCCEEeecCCCCCCCC
Q 040933 234 IQVRVINLTYMNLLPL-PSSLGLL---SNLRTLSLCYCKLLD-ISVTGELKKLEILCLRGSDIQQLP 295 (298)
Q Consensus 234 ~~Lr~L~l~~~~i~~l-P~~i~~L---~~L~~L~l~~~~l~~-p~~i~~L~~L~~L~l~~~~l~~lP 295 (298)
++|++|++++|.+... |..++.+ ++|++|++++|.++. |..+. ++|++|++++|++..+|
T Consensus 224 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~--~~L~~L~Ls~N~l~~~~ 288 (310)
T 4glp_A 224 VQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGLP--AKLRVLDLSSNRLNRAP 288 (310)
T ss_dssp CCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCCC--SCCSCEECCSCCCCSCC
T ss_pred CCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhhc--CCCCEEECCCCcCCCCc
Confidence 5555555555555553 5555544 355555555555555 54443 45555555555555543
No 88
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.12 E-value=4.6e-10 Score=97.05 Aligned_cols=107 Identities=18% Similarity=0.232 Sum_probs=63.8
Q ss_pred hccCccEEEEeCCCCccCCCCcCCCCCCCcEEecccccccccccccChHHHhCCCCccEEEecCCCCCCCCccccCCCCC
Q 040933 180 AVKLYTSIVLRDIKTNVLPDRVLPECPQLKLFSVRADHQESSSLTIPNNFFEKMIQVRVINLTYMNLLPLPSSLGLLSNL 259 (298)
Q Consensus 180 ~~~~~~~l~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~l~~~~i~~lP~~i~~L~~L 259 (298)
...+++.|.+.+|.+..++. +..+++|+.|.+.+ +.+..++. +..+++|++|++++|.++.+|. ++.+.+|
T Consensus 105 ~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~----n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L 175 (308)
T 1h6u_A 105 GLQSIKTLDLTSTQITDVTP--LAGLSNLQVLYLDL----NQITNISP--LAGLTNLQYLSIGNAQVSDLTP-LANLSKL 175 (308)
T ss_dssp TCTTCCEEECTTSCCCCCGG--GTTCTTCCEEECCS----SCCCCCGG--GGGCTTCCEEECCSSCCCCCGG-GTTCTTC
T ss_pred CCCCCCEEECCCCCCCCchh--hcCCCCCCEEECCC----CccCcCcc--ccCCCCccEEEccCCcCCCChh-hcCCCCC
Confidence 34556666666666665554 35666666666665 34444444 4566666666666666666654 6666666
Q ss_pred cEeecCCCCCCCCcccCCCCCCCEEeecCCCCCCCC
Q 040933 260 RTLSLCYCKLLDISVTGELKKLEILCLRGSDIQQLP 295 (298)
Q Consensus 260 ~~L~l~~~~l~~p~~i~~L~~L~~L~l~~~~l~~lP 295 (298)
++|++++|.++....+..+++|++|++++|++..+|
T Consensus 176 ~~L~l~~n~l~~~~~l~~l~~L~~L~L~~N~l~~~~ 211 (308)
T 1h6u_A 176 TTLKADDNKISDISPLASLPNLIEVHLKNNQISDVS 211 (308)
T ss_dssp CEEECCSSCCCCCGGGGGCTTCCEEECTTSCCCBCG
T ss_pred CEEECCCCccCcChhhcCCCCCCEEEccCCccCccc
Confidence 666666666665222566666666666666655443
No 89
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.12 E-value=3.5e-10 Score=98.55 Aligned_cols=111 Identities=16% Similarity=0.200 Sum_probs=66.8
Q ss_pred cCccEEEEeCCCCccCCCCcCCCCCCCcEEecccccccccccccChHHHhCCCCccEEEecCCCCCCCCcc---------
Q 040933 182 KLYTSIVLRDIKTNVLPDRVLPECPQLKLFSVRADHQESSSLTIPNNFFEKMIQVRVINLTYMNLLPLPSS--------- 252 (298)
Q Consensus 182 ~~~~~l~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~l~~~~i~~lP~~--------- 252 (298)
..++.+.+.+|.+..++...+..+++|++|.+.+ +.+..+++..|..+++|++|++++|.++.+|..
T Consensus 52 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~----n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~L~~L~ 127 (330)
T 1xku_A 52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILIN----NKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELR 127 (330)
T ss_dssp TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS----SCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCCTTCCEEE
T ss_pred CCCeEEECCCCcCCEeChhhhccCCCCCEEECCC----CcCCeeCHHHhcCCCCCCEEECCCCcCCccChhhcccccEEE
Confidence 4566666666666666655456666666666665 344444333346666666666666665555433
Q ss_pred -------------ccCCCCCcEeecCCCCCCC----CcccCCCCCCCEEeecCCCCCCCCC
Q 040933 253 -------------LGLLSNLRTLSLCYCKLLD----ISVTGELKKLEILCLRGSDIQQLPV 296 (298)
Q Consensus 253 -------------i~~L~~L~~L~l~~~~l~~----p~~i~~L~~L~~L~l~~~~l~~lP~ 296 (298)
++.+.+|++|++++|.+.. |..++++++|++|++++|++..+|.
T Consensus 128 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~ 188 (330)
T 1xku_A 128 VHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQ 188 (330)
T ss_dssp CCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCS
T ss_pred CCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCc
Confidence 4555666666666666542 4556667777777777776666664
No 90
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.12 E-value=3.4e-10 Score=98.78 Aligned_cols=106 Identities=14% Similarity=0.194 Sum_probs=85.2
Q ss_pred ccCccEEEEeCCCCccCCCCcCCCCCCCcEEecccccccccccccChHHHhCCCCccEEEecCCCCCCCCccccCCCCCc
Q 040933 181 VKLYTSIVLRDIKTNVLPDRVLPECPQLKLFSVRADHQESSSLTIPNNFFEKMIQVRVINLTYMNLLPLPSSLGLLSNLR 260 (298)
Q Consensus 181 ~~~~~~l~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~l~~~~i~~lP~~i~~L~~L~ 260 (298)
+..++.+.+.+|.+..+++..+..+++|++|.+.+ +.+..+++..|..+++|++|++++|.++.+|..+. .+|+
T Consensus 53 ~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~----n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~--~~L~ 126 (332)
T 2ft3_A 53 SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVN----NKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLP--SSLV 126 (332)
T ss_dssp CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS----SCCCEECGGGSTTCTTCCEEECCSSCCCSCCSSCC--TTCC
T ss_pred CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCC----CccCccCHhHhhCcCCCCEEECCCCcCCccCcccc--ccCC
Confidence 46788999999998888776678889999999987 55666655556889999999999998888887766 6788
Q ss_pred EeecCCCCCCC-C-cccCCCCCCCEEeecCCCCC
Q 040933 261 TLSLCYCKLLD-I-SVTGELKKLEILCLRGSDIQ 292 (298)
Q Consensus 261 ~L~l~~~~l~~-p-~~i~~L~~L~~L~l~~~~l~ 292 (298)
+|++++|.+.. | ..++++++|++|++++|.+.
T Consensus 127 ~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~ 160 (332)
T 2ft3_A 127 ELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLE 160 (332)
T ss_dssp EEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCB
T ss_pred EEECCCCccCccCHhHhCCCccCCEEECCCCccc
Confidence 88888888777 4 45778888888888887664
No 91
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.12 E-value=5.2e-11 Score=109.56 Aligned_cols=112 Identities=14% Similarity=0.100 Sum_probs=76.3
Q ss_pred cCccEEEEeCCCCccCCCCcCCCCCCCcEEecccccccccccccChHHHhCCCCccEEEecCCCCCCCCccccCCCCCcE
Q 040933 182 KLYTSIVLRDIKTNVLPDRVLPECPQLKLFSVRADHQESSSLTIPNNFFEKMIQVRVINLTYMNLLPLPSSLGLLSNLRT 261 (298)
Q Consensus 182 ~~~~~l~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~l~~~~i~~lP~~i~~L~~L~~ 261 (298)
..++.|.+.+|.+..+++..+..+++|+.|++++ +......|..++..+++|++|++++|.++.+|. ...+++|++
T Consensus 120 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~---N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~-~~~l~~L~~ 195 (487)
T 3oja_A 120 QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKL---NEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG-QVVFAKLKT 195 (487)
T ss_dssp SSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTT---SCCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC-CCCCTTCCE
T ss_pred CCCCEEECCCCCCCCCCchhhcCCCCCCEEECCC---CCCCCcChHHHhhhCCcccEEecCCCccccccc-cccCCCCCE
Confidence 4677777777777776555456677778887777 332233444443467777777777777777653 345777777
Q ss_pred eecCCCCCCC-CcccCCCCCCCEEeecCCCCCCCCCC
Q 040933 262 LSLCYCKLLD-ISVTGELKKLEILCLRGSDIQQLPVE 297 (298)
Q Consensus 262 L~l~~~~l~~-p~~i~~L~~L~~L~l~~~~l~~lP~~ 297 (298)
|++++|.++. |+.++.+++|+.|++++|++..+|..
T Consensus 196 L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~ 232 (487)
T 3oja_A 196 LDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKA 232 (487)
T ss_dssp EECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTT
T ss_pred EECCCCCCCCCCHhHcCCCCccEEEecCCcCcccchh
Confidence 7777777777 66677777777777777777766653
No 92
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.11 E-value=1.9e-10 Score=109.90 Aligned_cols=111 Identities=19% Similarity=0.204 Sum_probs=70.9
Q ss_pred ccCccEEEEeCCCCccCCCCcCCCCCCCcEEecccccccccccccChHHHhCCCCccEEEecCCCCCCCC-ccccCCCCC
Q 040933 181 VKLYTSIVLRDIKTNVLPDRVLPECPQLKLFSVRADHQESSSLTIPNNFFEKMIQVRVINLTYMNLLPLP-SSLGLLSNL 259 (298)
Q Consensus 181 ~~~~~~l~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~l~~~~i~~lP-~~i~~L~~L 259 (298)
..+++.+.+.+|.+..+++..+..+++|++|.+.+ +.+..+|...|..+++|++|++++|.+..+| ..++.+.+|
T Consensus 48 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~----n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 123 (680)
T 1ziw_A 48 YSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQH----NELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNL 123 (680)
T ss_dssp GTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCS----SCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTC
T ss_pred CCcCcEEECCCCccCccCHHHHhcccCcCEEECCC----CccCccChhhhccCCCCCEEECCCCccCccChhHccccCCC
Confidence 35666677766666666555555666677776665 4555666655566667777777776666654 456666677
Q ss_pred cEeecCCCCCCC--CcccCCCCCCCEEeecCCCCCCCC
Q 040933 260 RTLSLCYCKLLD--ISVTGELKKLEILCLRGSDIQQLP 295 (298)
Q Consensus 260 ~~L~l~~~~l~~--p~~i~~L~~L~~L~l~~~~l~~lP 295 (298)
++|++++|.+.. |..++++++|++|++++|++..+|
T Consensus 124 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 161 (680)
T 1ziw_A 124 ITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALK 161 (680)
T ss_dssp CEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBC
T ss_pred CEEECCCCcccccCchhhcccccCCEEEccCCcccccC
Confidence 777777666555 455666666666666666655543
No 93
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.08 E-value=3.6e-10 Score=97.84 Aligned_cols=113 Identities=13% Similarity=0.094 Sum_probs=73.7
Q ss_pred cCccEEEEeCCCCccCCCCcCCCCCCCcEEecccccccccccc--cChHH-HhCCCCccEEEecCCCCCCCC----cccc
Q 040933 182 KLYTSIVLRDIKTNVLPDRVLPECPQLKLFSVRADHQESSSLT--IPNNF-FEKMIQVRVINLTYMNLLPLP----SSLG 254 (298)
Q Consensus 182 ~~~~~l~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~--lp~~~-~~~l~~Lr~L~l~~~~i~~lP----~~i~ 254 (298)
.+++.+.+.+|.+..++...+..+++|+.|++++ +..... +|..+ |..+++|++|++++|.++.+| ..+.
T Consensus 149 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~---N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~ 225 (312)
T 1wwl_A 149 PGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSD---NPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAA 225 (312)
T ss_dssp TTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCS---CTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHH
T ss_pred CCCcEEEeeCCCCccchHHHhccCCCCCEEECCC---CCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHh
Confidence 6788888888888887766667888888888887 332221 12221 256677777777777776433 1224
Q ss_pred CCCCCcEeecCCCCCCC-C--cccCCCCCCCEEeecCCCCCCCCCC
Q 040933 255 LLSNLRTLSLCYCKLLD-I--SVTGELKKLEILCLRGSDIQQLPVE 297 (298)
Q Consensus 255 ~L~~L~~L~l~~~~l~~-p--~~i~~L~~L~~L~l~~~~l~~lP~~ 297 (298)
.+++|++|++++|.+.. + ..+..+++|++|++++|++..+|..
T Consensus 226 ~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~ 271 (312)
T 1wwl_A 226 ARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKG 271 (312)
T ss_dssp TTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCSS
T ss_pred cCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhhhh
Confidence 56677777777777666 3 3455567777777777777777654
No 94
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.08 E-value=6.9e-10 Score=93.72 Aligned_cols=108 Identities=16% Similarity=0.203 Sum_probs=86.3
Q ss_pred hhhccCccEEEEeCCCCccCCCCcCCCCCCCcEEecccccccccccccChHHHhCCCCccEEEecCCCCCCCCccccCCC
Q 040933 178 ENAVKLYTSIVLRDIKTNVLPDRVLPECPQLKLFSVRADHQESSSLTIPNNFFEKMIQVRVINLTYMNLLPLPSSLGLLS 257 (298)
Q Consensus 178 ~~~~~~~~~l~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~l~~~~i~~lP~~i~~L~ 257 (298)
.....+++.+.+.+|.+..++.. .. ++|+.|.+.+ +.+..++. +..+++|++|++++|+++.+| .++.+.
T Consensus 81 l~~l~~L~~L~L~~N~l~~l~~~--~~-~~L~~L~L~~----N~l~~~~~--l~~l~~L~~L~Ls~N~i~~~~-~l~~l~ 150 (263)
T 1xeu_A 81 LKDLTKLEELSVNRNRLKNLNGI--PS-ACLSRLFLDN----NELRDTDS--LIHLKNLEILSIRNNKLKSIV-MLGFLS 150 (263)
T ss_dssp GTTCSSCCEEECCSSCCSCCTTC--CC-SSCCEEECCS----SCCSBSGG--GTTCTTCCEEECTTSCCCBCG-GGGGCT
T ss_pred hccCCCCCEEECCCCccCCcCcc--cc-CcccEEEccC----CccCCChh--hcCcccccEEECCCCcCCCCh-HHccCC
Confidence 44567788889999888888765 33 8888998887 55666653 588889999999999888886 788888
Q ss_pred CCcEeecCCCCCCCCcccCCCCCCCEEeecCCCCCCCC
Q 040933 258 NLRTLSLCYCKLLDISVTGELKKLEILCLRGSDIQQLP 295 (298)
Q Consensus 258 ~L~~L~l~~~~l~~p~~i~~L~~L~~L~l~~~~l~~lP 295 (298)
+|++|++++|.+.....+..+++|++|++++|.+...|
T Consensus 151 ~L~~L~L~~N~i~~~~~l~~l~~L~~L~l~~N~~~~~~ 188 (263)
T 1xeu_A 151 KLEVLDLHGNEITNTGGLTRLKKVNWIDLTGQKCVNEP 188 (263)
T ss_dssp TCCEEECTTSCCCBCTTSTTCCCCCEEEEEEEEEECCC
T ss_pred CCCEEECCCCcCcchHHhccCCCCCEEeCCCCcccCCc
Confidence 89999999988877667888888999999888766555
No 95
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.08 E-value=9.4e-11 Score=101.62 Aligned_cols=109 Identities=13% Similarity=0.193 Sum_probs=65.5
Q ss_pred hccCccEEEEeC-CCCccCCCCcCCCCCCCcEEecccccccccccccChHHHhCCCCccEEEecCCCCC-CCCccccCCC
Q 040933 180 AVKLYTSIVLRD-IKTNVLPDRVLPECPQLKLFSVRADHQESSSLTIPNNFFEKMIQVRVINLTYMNLL-PLPSSLGLLS 257 (298)
Q Consensus 180 ~~~~~~~l~l~~-~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~l~~~~i~-~lP~~i~~L~ 257 (298)
....++.+.+.+ |.+....+..+..+++|++|.+.+ +.....+|..+ ..+++|++|++++|.+. .+|..++.++
T Consensus 74 ~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~---n~l~~~~p~~~-~~l~~L~~L~Ls~N~l~~~~p~~~~~l~ 149 (313)
T 1ogq_A 74 NLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITH---TNVSGAIPDFL-SQIKTLVTLDFSYNALSGTLPPSISSLP 149 (313)
T ss_dssp GCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEE---ECCEEECCGGG-GGCTTCCEEECCSSEEESCCCGGGGGCT
T ss_pred CCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcC---CeeCCcCCHHH-hCCCCCCEEeCCCCccCCcCChHHhcCC
Confidence 345666677763 555432222246666777777666 22222455443 66667777777776666 3566666666
Q ss_pred CCcEeecCCCCCCC--CcccCCCC-CCCEEeecCCCCC
Q 040933 258 NLRTLSLCYCKLLD--ISVTGELK-KLEILCLRGSDIQ 292 (298)
Q Consensus 258 ~L~~L~l~~~~l~~--p~~i~~L~-~L~~L~l~~~~l~ 292 (298)
+|++|++++|.+.. |..++++. +|++|++++|++.
T Consensus 150 ~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~ 187 (313)
T 1ogq_A 150 NLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT 187 (313)
T ss_dssp TCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEE
T ss_pred CCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeee
Confidence 77777777766653 66666666 6666666666554
No 96
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.07 E-value=1e-09 Score=103.36 Aligned_cols=108 Identities=24% Similarity=0.268 Sum_probs=67.0
Q ss_pred hhhccCccEEEEeCCCCccCCCCcCCCCCCCcEEecccccccccccccChHHHhCCCCccEEEecCCCCCCCCccccCCC
Q 040933 178 ENAVKLYTSIVLRDIKTNVLPDRVLPECPQLKLFSVRADHQESSSLTIPNNFFEKMIQVRVINLTYMNLLPLPSSLGLLS 257 (298)
Q Consensus 178 ~~~~~~~~~l~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~l~~~~i~~lP~~i~~L~ 257 (298)
......++.|.+.+|.+..++. +..+++|+.|.+++ +.+..++. +..+++|+.|+|++|.+..+ ..++.+.
T Consensus 83 l~~l~~L~~L~Ls~N~l~~l~~--l~~l~~L~~L~Ls~----N~l~~l~~--l~~l~~L~~L~Ls~N~l~~l-~~l~~l~ 153 (605)
T 1m9s_A 83 LTNLKNLGWLFLDENKIKDLSS--LKDLKKLKSLSLEH----NGISDING--LVHLPQLESLYLGNNKITDI-TVLSRLT 153 (605)
T ss_dssp GGGCTTCCEEECCSSCCCCCTT--STTCTTCCEEECTT----SCCCCCGG--GGGCTTCSEEECCSSCCCCC-GGGGSCT
T ss_pred hccCCCCCEEECcCCCCCCChh--hccCCCCCEEEecC----CCCCCCcc--ccCCCccCEEECCCCccCCc-hhhcccC
Confidence 3445567777777777766653 36677777777766 34444433 46666666666666666666 3566666
Q ss_pred CCcEeecCCCCCCC-CcccCCCCCCCEEeecCCCCCCCC
Q 040933 258 NLRTLSLCYCKLLD-ISVTGELKKLEILCLRGSDIQQLP 295 (298)
Q Consensus 258 ~L~~L~l~~~~l~~-p~~i~~L~~L~~L~l~~~~l~~lP 295 (298)
+|+.|+|++|.+.. ++ ++.+++|+.|+|++|++..+|
T Consensus 154 ~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~i~~l~ 191 (605)
T 1m9s_A 154 KLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDLR 191 (605)
T ss_dssp TCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBCG
T ss_pred CCCEEECcCCcCCCchh-hccCCCCCEEECcCCCCCCCh
Confidence 66666666666666 33 666666666666666555543
No 97
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.06 E-value=5.8e-10 Score=88.21 Aligned_cols=94 Identities=16% Similarity=0.148 Sum_probs=83.7
Q ss_pred hccCccEEEEeCCCCccCCCCcCCCCCCCcEEecccccccccccccChHHHhCCCCccEEEecCCCCCCCCcc-ccCCCC
Q 040933 180 AVKLYTSIVLRDIKTNVLPDRVLPECPQLKLFSVRADHQESSSLTIPNNFFEKMIQVRVINLTYMNLLPLPSS-LGLLSN 258 (298)
Q Consensus 180 ~~~~~~~l~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~l~~~~i~~lP~~-i~~L~~ 258 (298)
.+..++.|.+.+|.+..+++..+..+++|+.|++++ +.+..+|...|..+++|++|++++|.++.+|.. ++.+.+
T Consensus 31 ~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~----N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~ 106 (174)
T 2r9u_A 31 IPTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNS----NKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKS 106 (174)
T ss_dssp CCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS----SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred cCCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCC----CCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccC
Confidence 357899999999999999887789999999999998 678889998889999999999999999999865 999999
Q ss_pred CcEeecCCCCCCC-CcccCC
Q 040933 259 LRTLSLCYCKLLD-ISVTGE 277 (298)
Q Consensus 259 L~~L~l~~~~l~~-p~~i~~ 277 (298)
|++|++++|++.. +..+..
T Consensus 107 L~~L~L~~N~~~c~~~~~~~ 126 (174)
T 2r9u_A 107 LTHIYLYNNPWDCECRDIMY 126 (174)
T ss_dssp CSEEECCSSCBCTTBGGGHH
T ss_pred CCEEEeCCCCcccccccHHH
Confidence 9999999999887 654433
No 98
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.06 E-value=1.8e-10 Score=100.53 Aligned_cols=65 Identities=23% Similarity=0.266 Sum_probs=30.9
Q ss_pred hCCCCccEEEecCCCCCCCC-ccccCCCCCcEeecCCCCCCC-CcccCCCCCCCEEeecCCCCCCCC
Q 040933 231 EKMIQVRVINLTYMNLLPLP-SSLGLLSNLRTLSLCYCKLLD-ISVTGELKKLEILCLRGSDIQQLP 295 (298)
Q Consensus 231 ~~l~~Lr~L~l~~~~i~~lP-~~i~~L~~L~~L~l~~~~l~~-p~~i~~L~~L~~L~l~~~~l~~lP 295 (298)
..+++|++|++++|.+..+| ..++.+++|++|++++|.+.. |..++.+++|++|++++|++..+|
T Consensus 214 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~l~~~~ 280 (332)
T 2ft3_A 214 LRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVG 280 (332)
T ss_dssp TTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCCTTGGGCTTCCEEECCSSCCCBCC
T ss_pred cCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeecChhhhcCccCCEEECCCCCCCccC
Confidence 44444445555444444433 234444445555555444444 444444445555555444444443
No 99
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.06 E-value=4.9e-10 Score=103.67 Aligned_cols=101 Identities=13% Similarity=0.077 Sum_probs=90.0
Q ss_pred cEEEEeCCCCccCCCCcCCCCCCCcEEecccccccccccccChHHHhCCCCccEEEecCCCCCCC-CccccCCCCCcEee
Q 040933 185 TSIVLRDIKTNVLPDRVLPECPQLKLFSVRADHQESSSLTIPNNFFEKMIQVRVINLTYMNLLPL-PSSLGLLSNLRTLS 263 (298)
Q Consensus 185 ~~l~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~l~~~~i~~l-P~~i~~L~~L~~L~ 263 (298)
+.+.++++.+..+|..+. ++++.|.+++ +.+..+++..|..+++|++|++++|.++.+ |..++.+++|++|+
T Consensus 3 ~~l~ls~n~l~~ip~~~~---~~L~~L~Ls~----n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 75 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPKDLS---QKTTILNISQ----NYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLD 75 (520)
T ss_dssp CEEECTTSCCSSCCCSCC---TTCSEEECCS----SCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEE
T ss_pred ceEecCCCCccccccccc---ccccEEECCC----CcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEe
Confidence 578889999999997632 8999999998 667788877779999999999999999997 78999999999999
Q ss_pred cCCCCCCC-CcccCCCCCCCEEeecCCCCCCC
Q 040933 264 LCYCKLLD-ISVTGELKKLEILCLRGSDIQQL 294 (298)
Q Consensus 264 l~~~~l~~-p~~i~~L~~L~~L~l~~~~l~~l 294 (298)
+++|.++. |.. .+++|++|++++|++..+
T Consensus 76 Ls~N~l~~lp~~--~l~~L~~L~L~~N~l~~~ 105 (520)
T 2z7x_B 76 LSHNKLVKISCH--PTVNLKHLDLSFNAFDAL 105 (520)
T ss_dssp CCSSCCCEEECC--CCCCCSEEECCSSCCSSC
T ss_pred cCCCceeecCcc--ccCCccEEeccCCccccc
Confidence 99999999 766 899999999999998864
No 100
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.05 E-value=1.9e-09 Score=94.41 Aligned_cols=110 Identities=15% Similarity=0.196 Sum_probs=68.8
Q ss_pred CchhhccCccEEEEeCCCCccCCCCcCCCCCCCcEEecccccccccccccChHHHhCCCCccEEEecCCCCCCCCccccC
Q 040933 176 SDENAVKLYTSIVLRDIKTNVLPDRVLPECPQLKLFSVRADHQESSSLTIPNNFFEKMIQVRVINLTYMNLLPLPSSLGL 255 (298)
Q Consensus 176 ~~~~~~~~~~~l~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~l~~~~i~~lP~~i~~ 255 (298)
+......+++.+.+.+|.+..++. +..+++|++|.+.+ +.+..++. |..+++|++|++++|.+..+|. +..
T Consensus 60 ~~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~----n~i~~~~~--~~~l~~L~~L~l~~n~i~~~~~-~~~ 130 (347)
T 4fmz_A 60 QGIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGT----NKITDISA--LQNLTNLRELYLNEDNISDISP-LAN 130 (347)
T ss_dssp TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCS----SCCCCCGG--GTTCTTCSEEECTTSCCCCCGG-GTT
T ss_pred hhhhhcCCccEEEccCCccccchh--hhcCCcCCEEEccC----CcccCchH--HcCCCcCCEEECcCCcccCchh-hcc
Confidence 333445677777777777776665 36777777777776 34445543 4677777777777777766664 666
Q ss_pred CCCCcEeecCCCCCCC-CcccCCCCCCCEEeecCCCCCCC
Q 040933 256 LSNLRTLSLCYCKLLD-ISVTGELKKLEILCLRGSDIQQL 294 (298)
Q Consensus 256 L~~L~~L~l~~~~l~~-p~~i~~L~~L~~L~l~~~~l~~l 294 (298)
+++|++|++++|.... +..++.+++|++|++++|.+..+
T Consensus 131 l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~ 170 (347)
T 4fmz_A 131 LTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDV 170 (347)
T ss_dssp CTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCC
T ss_pred CCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCc
Confidence 6666666666665333 44455666666666655554443
No 101
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.05 E-value=4.3e-10 Score=104.67 Aligned_cols=113 Identities=14% Similarity=0.200 Sum_probs=98.8
Q ss_pred hccCccEEEEeCCCCccCCCCcCCCCCCCcEEecccccccccccccChHHHhCCCCccEEEecCCCCCC--CCccccCCC
Q 040933 180 AVKLYTSIVLRDIKTNVLPDRVLPECPQLKLFSVRADHQESSSLTIPNNFFEKMIQVRVINLTYMNLLP--LPSSLGLLS 257 (298)
Q Consensus 180 ~~~~~~~l~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~l~~~~i~~--lP~~i~~L~ 257 (298)
...+++.+.+.+|.+..+++..+..+++|++|++++ +.+..+++..|..+++|++|++++|.++. .|..++.++
T Consensus 48 ~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~----n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~ 123 (549)
T 2z81_A 48 ACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSD----NHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLT 123 (549)
T ss_dssp SCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTT----SCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCT
T ss_pred cCCcccEEECCCCCcCccChhhccccccCCEEECCC----CccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccC
Confidence 457899999999999999877789999999999998 67788888877999999999999999985 477899999
Q ss_pred CCcEeecCCCC-CCC-C-cccCCCCCCCEEeecCCCCCC-CCC
Q 040933 258 NLRTLSLCYCK-LLD-I-SVTGELKKLEILCLRGSDIQQ-LPV 296 (298)
Q Consensus 258 ~L~~L~l~~~~-l~~-p-~~i~~L~~L~~L~l~~~~l~~-lP~ 296 (298)
+|++|++++|. +.. | ..++++++|++|++++|++.. .|.
T Consensus 124 ~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 166 (549)
T 2z81_A 124 NLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQ 166 (549)
T ss_dssp TCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTT
T ss_pred CccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChh
Confidence 99999999998 555 5 689999999999999998775 443
No 102
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.04 E-value=2.3e-10 Score=111.79 Aligned_cols=61 Identities=26% Similarity=0.328 Sum_probs=31.9
Q ss_pred CccEEEecCCCCCCCCc--cccCCCCCcEeecCCCCCCC-CcccCCCCCCCEEeecCCCCCCCCC
Q 040933 235 QVRVINLTYMNLLPLPS--SLGLLSNLRTLSLCYCKLLD-ISVTGELKKLEILCLRGSDIQQLPV 296 (298)
Q Consensus 235 ~Lr~L~l~~~~i~~lP~--~i~~L~~L~~L~l~~~~l~~-p~~i~~L~~L~~L~l~~~~l~~lP~ 296 (298)
+|++|++++|.+..+|. .++.+++|++|++++|.+.. | .++++++|++|++++|++..+|.
T Consensus 549 ~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~~L~Ls~N~l~~lp~ 612 (876)
T 4ecn_A 549 KIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLKLDYNQIEEIPE 612 (876)
T ss_dssp TCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCBCC-CCCTTSEESEEECCSSCCSCCCT
T ss_pred CccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcccch-hhcCCCcceEEECcCCccccchH
Confidence 44444444444444554 45555555555555555444 4 55555555555555555555553
No 103
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.04 E-value=7.1e-10 Score=105.30 Aligned_cols=89 Identities=17% Similarity=0.136 Sum_probs=55.6
Q ss_pred CCCCCcEEecccccccccccccChHHHhCCCCccEEEecCCCCCCCCccccCC--------CCCcEeecCCCCCCC-Ccc
Q 040933 204 ECPQLKLFSVRADHQESSSLTIPNNFFEKMIQVRVINLTYMNLLPLPSSLGLL--------SNLRTLSLCYCKLLD-ISV 274 (298)
Q Consensus 204 ~~~~L~~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~l~~~~i~~lP~~i~~L--------~~L~~L~l~~~~l~~-p~~ 274 (298)
.+++|+.|.+++ +.+..+|..+|..+++|++|++++|.++.+|..+... ++|++|++++|.++. |..
T Consensus 431 ~~~~L~~L~Ls~----N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~ 506 (636)
T 4eco_A 431 KGINVSSINLSN----NQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDD 506 (636)
T ss_dssp CCCCEEEEECCS----SCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGG
T ss_pred cCCCCCEEECcC----CccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCCccChh
Confidence 344566666665 4455677776666777777777777666666544332 266666666666666 666
Q ss_pred cC--CCCCCCEEeecCCCCCCCCC
Q 040933 275 TG--ELKKLEILCLRGSDIQQLPV 296 (298)
Q Consensus 275 i~--~L~~L~~L~l~~~~l~~lP~ 296 (298)
++ .+++|++|++++|++..+|.
T Consensus 507 ~~~~~l~~L~~L~Ls~N~l~~ip~ 530 (636)
T 4eco_A 507 FRATTLPYLVGIDLSYNSFSKFPT 530 (636)
T ss_dssp GSTTTCTTCCEEECCSSCCSSCCC
T ss_pred hhhccCCCcCEEECCCCCCCCcCh
Confidence 65 66666666666666666664
No 104
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.04 E-value=9.4e-10 Score=96.51 Aligned_cols=103 Identities=15% Similarity=0.143 Sum_probs=85.1
Q ss_pred EEEEeCC-CCccCCCCcCCCCCCCcEEecccccccccccccChHHHhCCCCccEEEecCCCCCCCC-ccccCCCCCcEee
Q 040933 186 SIVLRDI-KTNVLPDRVLPECPQLKLFSVRADHQESSSLTIPNNFFEKMIQVRVINLTYMNLLPLP-SSLGLLSNLRTLS 263 (298)
Q Consensus 186 ~l~l~~~-~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~l~~~~i~~lP-~~i~~L~~L~~L~ 263 (298)
.+...++ .+..+|. +..+++|+.|++++ .+.+..+|...|..+++|++|+|++|.|+.+| ..++.|.+|++|+
T Consensus 12 ~v~~~~~n~l~~ip~--l~~~~~L~~L~l~~---~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~ 86 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH--LPGAENLTELYIEN---QQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLN 86 (347)
T ss_dssp CEECCSSCCCTTTTT--SCSCSCCSEEECCS---CSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEE
T ss_pred EEEcCCCCCCCccCC--CCCCCCeeEEEccC---CCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEe
Confidence 3566666 7888888 58889999999985 47888888887899999999999999999875 5679999999999
Q ss_pred cCCCCCCC-CcccCCCCCCCEEeecCCCCCC
Q 040933 264 LCYCKLLD-ISVTGELKKLEILCLRGSDIQQ 293 (298)
Q Consensus 264 l~~~~l~~-p~~i~~L~~L~~L~l~~~~l~~ 293 (298)
|++|.++. |..+....+|+.|++.+|.+..
T Consensus 87 l~~N~l~~~~~~~~~~~~L~~l~l~~N~~~c 117 (347)
T 2ifg_A 87 LSFNALESLSWKTVQGLSLQELVLSGNPLHC 117 (347)
T ss_dssp CCSSCCSCCCSTTTCSCCCCEEECCSSCCCC
T ss_pred CCCCccceeCHHHcccCCceEEEeeCCCccC
Confidence 99999998 7665554459999999987763
No 105
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.03 E-value=5.6e-10 Score=105.19 Aligned_cols=112 Identities=12% Similarity=0.097 Sum_probs=88.0
Q ss_pred hccCccEEEEeCCCCccCCCCcCCCCCCCcEEecccccccccccccChHHHhCCCCccEEEecCCCCCCC-CccccCCCC
Q 040933 180 AVKLYTSIVLRDIKTNVLPDRVLPECPQLKLFSVRADHQESSSLTIPNNFFEKMIQVRVINLTYMNLLPL-PSSLGLLSN 258 (298)
Q Consensus 180 ~~~~~~~l~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~l~~~~i~~l-P~~i~~L~~ 258 (298)
...+++.|.+.+|.+..+.+..|..+++|++|.+++ +.+..+++..|..+++|++|++++|.++.+ |..++.+.+
T Consensus 55 ~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~----n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~ 130 (606)
T 3t6q_A 55 RLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTA----NPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKT 130 (606)
T ss_dssp TCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTT----CCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTT
T ss_pred cCccceEEECCCCccceeChhhccCccccCeeeCCC----CcccccChhhhcccccccEeeccccCcccCCcchhccCCc
Confidence 346788899998888888776678888999999887 455555555568888899999998888886 677888888
Q ss_pred CcEeecCCCCCCC--CcccCCCCCCCEEeecCCCCCCCC
Q 040933 259 LRTLSLCYCKLLD--ISVTGELKKLEILCLRGSDIQQLP 295 (298)
Q Consensus 259 L~~L~l~~~~l~~--p~~i~~L~~L~~L~l~~~~l~~lP 295 (298)
|++|++++|.+.. ++.+..+++|++|++++|++..++
T Consensus 131 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 169 (606)
T 3t6q_A 131 LESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLS 169 (606)
T ss_dssp CCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEEC
T ss_pred ccEEECCCCcccccCcccccCCcccCEEEcccCcccccC
Confidence 8888888888776 355556888888888888776553
No 106
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.03 E-value=6.9e-10 Score=103.78 Aligned_cols=103 Identities=17% Similarity=0.190 Sum_probs=92.2
Q ss_pred ccEEEEeCCCCccCCCCcCCCCCCCcEEecccccccccccccChHHHhCCCCccEEEecCCCCCCC-CccccCCCCCcEe
Q 040933 184 YTSIVLRDIKTNVLPDRVLPECPQLKLFSVRADHQESSSLTIPNNFFEKMIQVRVINLTYMNLLPL-PSSLGLLSNLRTL 262 (298)
Q Consensus 184 ~~~l~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~l~~~~i~~l-P~~i~~L~~L~~L 262 (298)
.+.+.+.++.+..+|..+ .++++.|++++ +.+..+++..|..+++|++|++++|.++.+ |..++.+++|++|
T Consensus 33 ~~~l~ls~~~L~~ip~~~---~~~L~~L~Ls~----N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 105 (562)
T 3a79_B 33 ESMVDYSNRNLTHVPKDL---PPRTKALSLSQ----NSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYL 105 (562)
T ss_dssp CCEEECTTSCCCSCCTTS---CTTCCEEECCS----SCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEE
T ss_pred CcEEEcCCCCCccCCCCC---CCCcCEEECCC----CCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEE
Confidence 488999999999999753 38999999998 677888877779999999999999999996 6789999999999
Q ss_pred ecCCCCCCC-CcccCCCCCCCEEeecCCCCCCCC
Q 040933 263 SLCYCKLLD-ISVTGELKKLEILCLRGSDIQQLP 295 (298)
Q Consensus 263 ~l~~~~l~~-p~~i~~L~~L~~L~l~~~~l~~lP 295 (298)
++++|.++. |.. .+++|++|++++|++..+|
T Consensus 106 ~Ls~N~l~~lp~~--~l~~L~~L~Ls~N~l~~l~ 137 (562)
T 3a79_B 106 DVSHNRLQNISCC--PMASLRHLDLSFNDFDVLP 137 (562)
T ss_dssp ECTTSCCCEECSC--CCTTCSEEECCSSCCSBCC
T ss_pred ECCCCcCCccCcc--ccccCCEEECCCCCccccC
Confidence 999999999 776 8999999999999998775
No 107
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.01 E-value=6.7e-10 Score=96.11 Aligned_cols=84 Identities=20% Similarity=0.229 Sum_probs=38.0
Q ss_pred CCCcEEecccccccccccccChHHHhCCCCccEEEecCCCCCC---CCccc--cCCCCCcEeecCCCCCCC-C----ccc
Q 040933 206 PQLKLFSVRADHQESSSLTIPNNFFEKMIQVRVINLTYMNLLP---LPSSL--GLLSNLRTLSLCYCKLLD-I----SVT 275 (298)
Q Consensus 206 ~~L~~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~l~~~~i~~---lP~~i--~~L~~L~~L~l~~~~l~~-p----~~i 275 (298)
++|++|.+.+ +.+..++...|..+++|++|++++|.+.. +|..+ +.+.+|++|++++|.++. | ..+
T Consensus 149 ~~L~~L~L~~----N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~ 224 (312)
T 1wwl_A 149 PGLKVLSIAQ----AHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALA 224 (312)
T ss_dssp TTCCEEEEES----CSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHH
T ss_pred CCCcEEEeeC----CCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHH
Confidence 4444444444 33333443333445555555555554332 22233 445555555555555443 1 112
Q ss_pred CCCCCCCEEeecCCCCCC
Q 040933 276 GELKKLEILCLRGSDIQQ 293 (298)
Q Consensus 276 ~~L~~L~~L~l~~~~l~~ 293 (298)
.++++|++|++++|++..
T Consensus 225 ~~l~~L~~L~Ls~N~l~~ 242 (312)
T 1wwl_A 225 AARVQLQGLDLSHNSLRD 242 (312)
T ss_dssp HTTCCCSEEECTTSCCCS
T ss_pred hcCCCCCEEECCCCcCCc
Confidence 344555555555555544
No 108
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.99 E-value=1.6e-09 Score=85.26 Aligned_cols=88 Identities=18% Similarity=0.207 Sum_probs=80.2
Q ss_pred hccCccEEEEeCCCCccCCCCcCCCCCCCcEEecccccccccccccChHHHhCCCCccEEEecCCCCCCCCc-cccCCCC
Q 040933 180 AVKLYTSIVLRDIKTNVLPDRVLPECPQLKLFSVRADHQESSSLTIPNNFFEKMIQVRVINLTYMNLLPLPS-SLGLLSN 258 (298)
Q Consensus 180 ~~~~~~~l~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~l~~~~i~~lP~-~i~~L~~ 258 (298)
.+..++.|.+.+|.+..+++..|..+++|+.|++++ +.+..+|...|..+++|++|++++|.++.+|. .++.+.+
T Consensus 28 ~~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~----N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 103 (170)
T 3g39_A 28 IPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDN----NQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKS 103 (170)
T ss_dssp CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCS----SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred CCCCCcEEEcCCCcCCccChhhhcCcccCCEEECCC----CCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCC
Confidence 357899999999999999887789999999999998 67889999888999999999999999999876 4899999
Q ss_pred CcEeecCCCCCCC
Q 040933 259 LRTLSLCYCKLLD 271 (298)
Q Consensus 259 L~~L~l~~~~l~~ 271 (298)
|++|++++|++..
T Consensus 104 L~~L~L~~N~~~c 116 (170)
T 3g39_A 104 LTHIWLLNNPWDC 116 (170)
T ss_dssp CCEEECCSSCBCT
T ss_pred CCEEEeCCCCCCC
Confidence 9999999999776
No 109
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.99 E-value=1.5e-09 Score=102.20 Aligned_cols=112 Identities=20% Similarity=0.272 Sum_probs=96.0
Q ss_pred CchhhccCccEEEEeCCCCccCCCCcCCCCCCCcEEecccccccccccccChHHHhCCCCccEEEecCCCCCCCCccccC
Q 040933 176 SDENAVKLYTSIVLRDIKTNVLPDRVLPECPQLKLFSVRADHQESSSLTIPNNFFEKMIQVRVINLTYMNLLPLPSSLGL 255 (298)
Q Consensus 176 ~~~~~~~~~~~l~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~l~~~~i~~lP~~i~~ 255 (298)
+.......++.|.+.+|.+..++. +..+++|+.|.+++ +.+..++ .+..+++|+.|+|++|.+..+++ ++.
T Consensus 103 ~~l~~l~~L~~L~Ls~N~l~~l~~--l~~l~~L~~L~Ls~----N~l~~l~--~l~~l~~L~~L~Ls~N~l~~~~~-l~~ 173 (605)
T 1m9s_A 103 SSLKDLKKLKSLSLEHNGISDING--LVHLPQLESLYLGN----NKITDIT--VLSRLTKLDTLSLEDNQISDIVP-LAG 173 (605)
T ss_dssp TTSTTCTTCCEEECTTSCCCCCGG--GGGCTTCSEEECCS----SCCCCCG--GGGSCTTCSEEECCSSCCCCCGG-GTT
T ss_pred hhhccCCCCCEEEecCCCCCCCcc--ccCCCccCEEECCC----CccCCch--hhcccCCCCEEECcCCcCCCchh-hcc
Confidence 344456789999999999998865 48899999999998 5666663 36999999999999999999876 999
Q ss_pred CCCCcEeecCCCCCCCCcccCCCCCCCEEeecCCCCCCCCC
Q 040933 256 LSNLRTLSLCYCKLLDISVTGELKKLEILCLRGSDIQQLPV 296 (298)
Q Consensus 256 L~~L~~L~l~~~~l~~p~~i~~L~~L~~L~l~~~~l~~lP~ 296 (298)
+.+|+.|+|++|.+...+.++.+++|+.|+|++|++...|.
T Consensus 174 l~~L~~L~Ls~N~i~~l~~l~~l~~L~~L~L~~N~l~~~p~ 214 (605)
T 1m9s_A 174 LTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQECLNKPI 214 (605)
T ss_dssp CTTCCEEECCSSCCCBCGGGTTCTTCSEEECCSEEEECCCC
T ss_pred CCCCCEEECcCCCCCCChHHccCCCCCEEEccCCcCcCCcc
Confidence 99999999999999885579999999999999998776653
No 110
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.99 E-value=8.7e-10 Score=103.16 Aligned_cols=84 Identities=20% Similarity=0.251 Sum_probs=76.4
Q ss_pred CCcEEecccccccccccccChHHHhCCCCccEEEecCCCCCCCCccccCCCCCcEeecCCCCCCC-CcccCCCCCCCEEe
Q 040933 207 QLKLFSVRADHQESSSLTIPNNFFEKMIQVRVINLTYMNLLPLPSSLGLLSNLRTLSLCYCKLLD-ISVTGELKKLEILC 285 (298)
Q Consensus 207 ~L~~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~l~~~~i~~lP~~i~~L~~L~~L~l~~~~l~~-p~~i~~L~~L~~L~ 285 (298)
.|+.|.+++ +.+..+|. |..+++|++|++++|.++.+|..++.+++|++|+|++|.++. | .++++++|++|+
T Consensus 442 ~L~~L~Ls~----n~l~~lp~--~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~ 514 (567)
T 1dce_A 442 DVRVLHLAH----KDLTVLCH--LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELL 514 (567)
T ss_dssp TCSEEECTT----SCCSSCCC--GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEE
T ss_pred CceEEEecC----CCCCCCcC--ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEE
Confidence 477888887 67778887 699999999999999999999999999999999999999999 7 999999999999
Q ss_pred ecCCCCCCC--CCC
Q 040933 286 LRGSDIQQL--PVE 297 (298)
Q Consensus 286 l~~~~l~~l--P~~ 297 (298)
+++|++..+ |..
T Consensus 515 Ls~N~l~~~~~p~~ 528 (567)
T 1dce_A 515 LCNNRLQQSAAIQP 528 (567)
T ss_dssp CCSSCCCSSSTTGG
T ss_pred CCCCCCCCCCCcHH
Confidence 999999988 643
No 111
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=98.98 E-value=8.7e-10 Score=100.73 Aligned_cols=106 Identities=16% Similarity=0.203 Sum_probs=65.8
Q ss_pred ccCccEEEEeCCCCccCCCCcCCCCCCCcEEecccccccccccccChHHHhCCCCccEEEecCCCCCCCCccccCCCCCc
Q 040933 181 VKLYTSIVLRDIKTNVLPDRVLPECPQLKLFSVRADHQESSSLTIPNNFFEKMIQVRVINLTYMNLLPLPSSLGLLSNLR 260 (298)
Q Consensus 181 ~~~~~~l~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~l~~~~i~~lP~~i~~L~~L~ 260 (298)
...++.+.+.++.+..++.. ..+++|++|++++ +.+..+|+ |..+++|++|++++|.+..+|. ++.+++|+
T Consensus 45 l~~l~~L~l~~~~i~~l~~~--~~l~~L~~L~Ls~----n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~ 115 (466)
T 1o6v_A 45 LDQVTTLQADRLGIKSIDGV--EYLNNLTQINFSN----NQLTDITP--LKNLTKLVDILMNNNQIADITP-LANLTNLT 115 (466)
T ss_dssp HHTCCEEECCSSCCCCCTTG--GGCTTCCEEECCS----SCCCCCGG--GTTCTTCCEEECCSSCCCCCGG-GTTCTTCC
T ss_pred hccccEEecCCCCCccCcch--hhhcCCCEEECCC----CccCCchh--hhccccCCEEECCCCccccChh-hcCCCCCC
Confidence 35566666666666666542 5566666666665 34555554 4666666777776666666654 66666667
Q ss_pred EeecCCCCCCCCcccCCCCCCCEEeecCCCCCCCC
Q 040933 261 TLSLCYCKLLDISVTGELKKLEILCLRGSDIQQLP 295 (298)
Q Consensus 261 ~L~l~~~~l~~p~~i~~L~~L~~L~l~~~~l~~lP 295 (298)
+|++++|.+...+.++++++|++|++++|++..+|
T Consensus 116 ~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~ 150 (466)
T 1o6v_A 116 GLTLFNNQITDIDPLKNLTNLNRLELSSNTISDIS 150 (466)
T ss_dssp EEECCSSCCCCCGGGTTCTTCSEEEEEEEEECCCG
T ss_pred EEECCCCCCCCChHHcCCCCCCEEECCCCccCCCh
Confidence 77766666666222666666666666666555443
No 112
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=98.98 E-value=7.7e-10 Score=95.60 Aligned_cols=82 Identities=21% Similarity=0.258 Sum_probs=66.7
Q ss_pred CCCCCcEEeccccccccccccc-ChHHHhCC---CCccEEEecCCCCCCCCccccCCCCCcEeecCCCCCCC-CcccCCC
Q 040933 204 ECPQLKLFSVRADHQESSSLTI-PNNFFEKM---IQVRVINLTYMNLLPLPSSLGLLSNLRTLSLCYCKLLD-ISVTGEL 278 (298)
Q Consensus 204 ~~~~L~~L~l~~~~~~~~~~~l-p~~~~~~l---~~Lr~L~l~~~~i~~lP~~i~~L~~L~~L~l~~~~l~~-p~~i~~L 278 (298)
.+++|+.|++++ +.+..+ |..+ ..+ ++|++|++++|.++.+|..+. .+|++|++++|+++. |. +..+
T Consensus 222 ~l~~L~~L~Ls~----N~l~~~~p~~~-~~~~~~~~L~~L~Ls~N~l~~lp~~~~--~~L~~L~Ls~N~l~~~~~-~~~l 293 (310)
T 4glp_A 222 AGVQPHSLDLSH----NSLRATVNPSA-PRCMWSSALNSLNLSFAGLEQVPKGLP--AKLRVLDLSSNRLNRAPQ-PDEL 293 (310)
T ss_dssp HTCCCSSEECTT----SCCCCCCCSCC-SSCCCCTTCCCEECCSSCCCSCCSCCC--SCCSCEECCSCCCCSCCC-TTSC
T ss_pred cCCCCCEEECCC----CCCCccchhhH-HhccCcCcCCEEECCCCCCCchhhhhc--CCCCEEECCCCcCCCCch-hhhC
Confidence 456777777776 444444 6554 444 799999999999999998886 799999999999998 65 7899
Q ss_pred CCCCEEeecCCCCCC
Q 040933 279 KKLEILCLRGSDIQQ 293 (298)
Q Consensus 279 ~~L~~L~l~~~~l~~ 293 (298)
++|+.|++++|++..
T Consensus 294 ~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 294 PEVDNLTLDGNPFLV 308 (310)
T ss_dssp CCCSCEECSSTTTSC
T ss_pred CCccEEECcCCCCCC
Confidence 999999999998763
No 113
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=98.97 E-value=2.5e-09 Score=93.68 Aligned_cols=107 Identities=17% Similarity=0.260 Sum_probs=93.6
Q ss_pred hhccCccEEEEeCCCCccCCCCcCCCCCCCcEEecccccccccccccChHHHhCCCCccEEEecCCCCCCCCccccCCCC
Q 040933 179 NAVKLYTSIVLRDIKTNVLPDRVLPECPQLKLFSVRADHQESSSLTIPNNFFEKMIQVRVINLTYMNLLPLPSSLGLLSN 258 (298)
Q Consensus 179 ~~~~~~~~l~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~l~~~~i~~lP~~i~~L~~ 258 (298)
...++++.+.+.++.+..++. +..+++|++|.+.+ +.+..++. |..+++|++|++++|.++.+| .++.+++
T Consensus 41 ~~l~~L~~L~l~~~~i~~~~~--~~~~~~L~~L~l~~----n~i~~~~~--~~~l~~L~~L~L~~n~i~~~~-~~~~l~~ 111 (347)
T 4fmz_A 41 EELESITKLVVAGEKVASIQG--IEYLTNLEYLNLNG----NQITDISP--LSNLVKLTNLYIGTNKITDIS-ALQNLTN 111 (347)
T ss_dssp HHHTTCSEEECCSSCCCCCTT--GGGCTTCCEEECCS----SCCCCCGG--GTTCTTCCEEECCSSCCCCCG-GGTTCTT
T ss_pred hhcccccEEEEeCCccccchh--hhhcCCccEEEccC----Cccccchh--hhcCCcCCEEEccCCcccCch-HHcCCCc
Confidence 456789999999999998876 48899999999998 56777777 699999999999999999987 6999999
Q ss_pred CcEeecCCCCCCC-CcccCCCCCCCEEeecCC-CCCCCC
Q 040933 259 LRTLSLCYCKLLD-ISVTGELKKLEILCLRGS-DIQQLP 295 (298)
Q Consensus 259 L~~L~l~~~~l~~-p~~i~~L~~L~~L~l~~~-~l~~lP 295 (298)
|++|++++|.+.. |. ++.+++|++|++++| .+..+|
T Consensus 112 L~~L~l~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~ 149 (347)
T 4fmz_A 112 LRELYLNEDNISDISP-LANLTKMYSLNLGANHNLSDLS 149 (347)
T ss_dssp CSEEECTTSCCCCCGG-GTTCTTCCEEECTTCTTCCCCG
T ss_pred CCEEECcCCcccCchh-hccCCceeEEECCCCCCccccc
Confidence 9999999999998 54 999999999999999 454443
No 114
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=98.96 E-value=2.7e-09 Score=97.33 Aligned_cols=104 Identities=14% Similarity=0.126 Sum_probs=66.2
Q ss_pred hhhccCccEEEEeCCCCccCCCCcCCCCCCCcEEecccccccccccccChHHHhCCCCccEEEecCCCCCCCCccccCCC
Q 040933 178 ENAVKLYTSIVLRDIKTNVLPDRVLPECPQLKLFSVRADHQESSSLTIPNNFFEKMIQVRVINLTYMNLLPLPSSLGLLS 257 (298)
Q Consensus 178 ~~~~~~~~~l~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~l~~~~i~~lP~~i~~L~ 257 (298)
.....+++.+.+.+|.+..++ +..+++|+.|.+++ +.+..++ +..+++|++|++++|.++.+| ++.++
T Consensus 60 l~~l~~L~~L~Ls~n~l~~~~---~~~l~~L~~L~Ls~----N~l~~~~---~~~l~~L~~L~L~~N~l~~l~--~~~l~ 127 (457)
T 3bz5_A 60 IEKLTGLTKLICTSNNITTLD---LSQNTNLTYLACDS----NKLTNLD---VTPLTKLTYLNCDTNKLTKLD--VSQNP 127 (457)
T ss_dssp GGGCTTCSEEECCSSCCSCCC---CTTCTTCSEEECCS----SCCSCCC---CTTCTTCCEEECCSSCCSCCC--CTTCT
T ss_pred hcccCCCCEEEccCCcCCeEc---cccCCCCCEEECcC----CCCceee---cCCCCcCCEEECCCCcCCeec--CCCCC
Confidence 344556667777777666664 36666777777766 3444444 466777777777777776665 66777
Q ss_pred CCcEeecCCCCCCCCcccCCCCCCCEEeecCC-CCCCC
Q 040933 258 NLRTLSLCYCKLLDISVTGELKKLEILCLRGS-DIQQL 294 (298)
Q Consensus 258 ~L~~L~l~~~~l~~p~~i~~L~~L~~L~l~~~-~l~~l 294 (298)
+|++|++++|.++.. .++++++|++|++++| .+..+
T Consensus 128 ~L~~L~l~~N~l~~l-~l~~l~~L~~L~l~~n~~~~~~ 164 (457)
T 3bz5_A 128 LLTYLNCARNTLTEI-DVSHNTQLTELDCHLNKKITKL 164 (457)
T ss_dssp TCCEEECTTSCCSCC-CCTTCTTCCEEECTTCSCCCCC
T ss_pred cCCEEECCCCcccee-ccccCCcCCEEECCCCCccccc
Confidence 777777777776662 1666777777777776 34433
No 115
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=98.96 E-value=1e-09 Score=106.52 Aligned_cols=109 Identities=18% Similarity=0.166 Sum_probs=58.4
Q ss_pred CccEEEEeCCCCccCCCCcCCCCCCCcEEecccccccccccccChHHHhCCCCccEEEecCCCCC-CCCccccCCCCCcE
Q 040933 183 LYTSIVLRDIKTNVLPDRVLPECPQLKLFSVRADHQESSSLTIPNNFFEKMIQVRVINLTYMNLL-PLPSSLGLLSNLRT 261 (298)
Q Consensus 183 ~~~~l~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~l~~~~i~-~lP~~i~~L~~L~~ 261 (298)
+++.+.+.+|.+....+..+..+++|++|.+.+ +.....+|..+ ..+++|++|++++|.+. .+|..++.+++|++
T Consensus 443 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~---N~l~~~~p~~l-~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~ 518 (768)
T 3rgz_A 443 KLRDLKLWLNMLEGEIPQELMYVKTLETLILDF---NDLTGEIPSGL-SNCTNLNWISLSNNRLTGEIPKWIGRLENLAI 518 (768)
T ss_dssp TCCEEECCSSCCCSCCCGGGGGCTTCCEEECCS---SCCCSCCCGGG-GGCTTCCEEECCSSCCCSCCCGGGGGCTTCCE
T ss_pred CCCEEECCCCcccCcCCHHHcCCCCceEEEecC---CcccCcCCHHH-hcCCCCCEEEccCCccCCcCChHHhcCCCCCE
Confidence 444444444444422222234455555555555 22222344433 56666666666666655 35666666666666
Q ss_pred eecCCCCCCC--CcccCCCCCCCEEeecCCCCC-CCC
Q 040933 262 LSLCYCKLLD--ISVTGELKKLEILCLRGSDIQ-QLP 295 (298)
Q Consensus 262 L~l~~~~l~~--p~~i~~L~~L~~L~l~~~~l~-~lP 295 (298)
|++++|.+.. |..++.+++|++|++++|++. .+|
T Consensus 519 L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip 555 (768)
T 3rgz_A 519 LKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIP 555 (768)
T ss_dssp EECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCC
T ss_pred EECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCC
Confidence 6666666553 566666666666666666543 454
No 116
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=98.95 E-value=6.7e-10 Score=96.35 Aligned_cols=107 Identities=13% Similarity=0.103 Sum_probs=91.9
Q ss_pred hccCccEEEEeCCCCccCCCCcC-CCCCCCcEEecccccccccccccChHHHhCCCCccEEEecCCCCCCCCccccCCCC
Q 040933 180 AVKLYTSIVLRDIKTNVLPDRVL-PECPQLKLFSVRADHQESSSLTIPNNFFEKMIQVRVINLTYMNLLPLPSSLGLLSN 258 (298)
Q Consensus 180 ~~~~~~~l~l~~~~~~~l~~~~~-~~~~~L~~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~l~~~~i~~lP~~i~~L~~ 258 (298)
...+++.+.+.+|.+..++...+ ..+++|+.|.+++ +.+..++.. ..+++|++|++++|.++.+|..++.+++
T Consensus 142 ~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~----N~l~~~~~~--~~l~~L~~L~Ls~N~l~~l~~~~~~l~~ 215 (317)
T 3o53_A 142 CRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQY----NFIYDVKGQ--VVFAKLKTLDLSSNKLAFMGPEFQSAAG 215 (317)
T ss_dssp GGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTT----SCCCEEECC--CCCTTCCEEECCSSCCCEECGGGGGGTT
T ss_pred ccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCC----CcCcccccc--cccccCCEEECCCCcCCcchhhhcccCc
Confidence 35789999999999987754433 4679999999998 566666553 4589999999999999999988999999
Q ss_pred CcEeecCCCCCCC-CcccCCCCCCCEEeecCCCCC
Q 040933 259 LRTLSLCYCKLLD-ISVTGELKKLEILCLRGSDIQ 292 (298)
Q Consensus 259 L~~L~l~~~~l~~-p~~i~~L~~L~~L~l~~~~l~ 292 (298)
|++|++++|.++. |..++.+++|+.|++++|.+.
T Consensus 216 L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 216 VTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFH 250 (317)
T ss_dssp CSEEECTTSCCCEECTTCCCCTTCCEEECTTCCCB
T ss_pred ccEEECcCCcccchhhHhhcCCCCCEEEccCCCcc
Confidence 9999999999999 999999999999999999875
No 117
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=98.95 E-value=3e-09 Score=104.19 Aligned_cols=110 Identities=21% Similarity=0.180 Sum_probs=93.1
Q ss_pred cCccEEEEeCCCCccCCCCcCCCCCCCcEEecccccccccccccChHHHhCCCCccEEEecCCCCCCC-CccccCCCCCc
Q 040933 182 KLYTSIVLRDIKTNVLPDRVLPECPQLKLFSVRADHQESSSLTIPNNFFEKMIQVRVINLTYMNLLPL-PSSLGLLSNLR 260 (298)
Q Consensus 182 ~~~~~l~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~l~~~~i~~l-P~~i~~L~~L~ 260 (298)
..++.+.+.+|.+..+++..+..+++|+.|.+.+ +.+..+++..|..+++|++|++++|.+..+ |..++.+++|+
T Consensus 266 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~----n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 341 (844)
T 3j0a_A 266 SSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAY----NKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVA 341 (844)
T ss_dssp SCCCEEECTTCCCCEECSCCSSSCCCCCEEEEES----CCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCC
T ss_pred CCccEEECCCCcccccChhhhhcCCCCCEEECCC----CcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCC
Confidence 5788999999998888777778899999999987 566666666678999999999999999886 67899999999
Q ss_pred EeecCCCCCCC--CcccCCCCCCCEEeecCCCCCCCC
Q 040933 261 TLSLCYCKLLD--ISVTGELKKLEILCLRGSDIQQLP 295 (298)
Q Consensus 261 ~L~l~~~~l~~--p~~i~~L~~L~~L~l~~~~l~~lP 295 (298)
+|++++|.+.. +..++.+++|++|++++|.+..+|
T Consensus 342 ~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~ 378 (844)
T 3j0a_A 342 YIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIH 378 (844)
T ss_dssp EEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCS
T ss_pred EEECCCCCCCccChhhhcCCCCCCEEECCCCCCCccc
Confidence 99999999887 556888999999999998877655
No 118
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=98.94 E-value=1.5e-09 Score=105.23 Aligned_cols=111 Identities=21% Similarity=0.221 Sum_probs=72.2
Q ss_pred cCccEEEEeCCCCccCCCCcCCCCCCCcEEecccccccccccccChHHHhCCCCccEEEecCCCCCC-CCccccCCCCCc
Q 040933 182 KLYTSIVLRDIKTNVLPDRVLPECPQLKLFSVRADHQESSSLTIPNNFFEKMIQVRVINLTYMNLLP-LPSSLGLLSNLR 260 (298)
Q Consensus 182 ~~~~~l~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~l~~~~i~~-lP~~i~~L~~L~ 260 (298)
..++.+.+.+|.+....+..+..+++|+.|.+.+ +.....+|..+ ..+++|++|++++|.+.. +|..++.+++|+
T Consensus 418 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~---n~l~~~~p~~~-~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~ 493 (768)
T 3rgz_A 418 SELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWL---NMLEGEIPQEL-MYVKTLETLILDFNDLTGEIPSGLSNCTNLN 493 (768)
T ss_dssp TTCCEEECCSSEEESCCCGGGGGCTTCCEEECCS---SCCCSCCCGGG-GGCTTCCEEECCSSCCCSCCCGGGGGCTTCC
T ss_pred CCCCEEECcCCcccCcccHHHhcCCCCCEEECCC---CcccCcCCHHH-cCCCCceEEEecCCcccCcCCHHHhcCCCCC
Confidence 4555666666655533333345666666666666 33333555544 677777777777777764 677777777777
Q ss_pred EeecCCCCCCC--CcccCCCCCCCEEeecCCCCC-CCCC
Q 040933 261 TLSLCYCKLLD--ISVTGELKKLEILCLRGSDIQ-QLPV 296 (298)
Q Consensus 261 ~L~l~~~~l~~--p~~i~~L~~L~~L~l~~~~l~-~lP~ 296 (298)
+|++++|++.. |..++.+++|++|++++|++. .+|.
T Consensus 494 ~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~ 532 (768)
T 3rgz_A 494 WISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPA 532 (768)
T ss_dssp EEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCG
T ss_pred EEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCH
Confidence 77777777664 777777777777777777665 4553
No 119
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.94 E-value=8.6e-09 Score=96.27 Aligned_cols=35 Identities=23% Similarity=0.279 Sum_probs=15.3
Q ss_pred CCccEEEecCCCCCCCCccccCCCCCcEeecCCCCCCC
Q 040933 234 IQVRVINLTYMNLLPLPSSLGLLSNLRTLSLCYCKLLD 271 (298)
Q Consensus 234 ~~Lr~L~l~~~~i~~lP~~i~~L~~L~~L~l~~~~l~~ 271 (298)
++|++|++++|.++.+|. ++ .+|++|++++|.++.
T Consensus 160 ~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N~L~~ 194 (571)
T 3cvr_A 160 TSLEVLSVRNNQLTFLPE-LP--ESLEALDVSTNLLES 194 (571)
T ss_dssp TTCCEEECCSSCCSCCCC-CC--TTCCEEECCSSCCSS
T ss_pred CCcCEEECCCCCCCCcch-hh--CCCCEEECcCCCCCc
Confidence 344444444444444443 33 344444444444444
No 120
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.92 E-value=6.7e-09 Score=97.00 Aligned_cols=97 Identities=14% Similarity=0.157 Sum_probs=60.5
Q ss_pred ccCccEEEEeCCCCccCCCCcCCCCCCCcEEecccccccccccccChHHHhCCCCccEEEecCCCCCCCCccccCCCCC-
Q 040933 181 VKLYTSIVLRDIKTNVLPDRVLPECPQLKLFSVRADHQESSSLTIPNNFFEKMIQVRVINLTYMNLLPLPSSLGLLSNL- 259 (298)
Q Consensus 181 ~~~~~~l~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~l~~~~i~~lP~~i~~L~~L- 259 (298)
..+++.|.+.+|.+..+|. .+++|+.|.+++ +.+..+|. + . ++|++|++++|.|+.+|. ++. +|
T Consensus 139 l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~----N~L~~lp~-l-~--~~L~~L~Ls~N~L~~lp~-~~~--~L~ 203 (571)
T 3cvr_A 139 PALLEYINADNNQLTMLPE----LPTSLEVLSVRN----NQLTFLPE-L-P--ESLEALDVSTNLLESLPA-VPV--RNH 203 (571)
T ss_dssp CTTCCEEECCSSCCSCCCC----CCTTCCEEECCS----SCCSCCCC-C-C--TTCCEEECCSSCCSSCCC-CC------
T ss_pred CccccEEeCCCCccCcCCC----cCCCcCEEECCC----CCCCCcch-h-h--CCCCEEECcCCCCCchhh-HHH--hhh
Confidence 3455555555555555543 345666666665 44555665 2 3 677777777777777766 544 56
Q ss_pred ------cEeecCCCCCCC-CcccCCCCCCCEEeecCCCCC
Q 040933 260 ------RTLSLCYCKLLD-ISVTGELKKLEILCLRGSDIQ 292 (298)
Q Consensus 260 ------~~L~l~~~~l~~-p~~i~~L~~L~~L~l~~~~l~ 292 (298)
++|++++|.++. |..++++++|++|++++|++.
T Consensus 204 ~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~ 243 (571)
T 3cvr_A 204 HSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLS 243 (571)
T ss_dssp ----CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCC
T ss_pred cccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcCC
Confidence 777777777777 776777777777777777654
No 121
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.90 E-value=1.1e-09 Score=100.83 Aligned_cols=107 Identities=13% Similarity=0.103 Sum_probs=92.3
Q ss_pred hccCccEEEEeCCCCccCCCCcC-CCCCCCcEEecccccccccccccChHHHhCCCCccEEEecCCCCCCCCccccCCCC
Q 040933 180 AVKLYTSIVLRDIKTNVLPDRVL-PECPQLKLFSVRADHQESSSLTIPNNFFEKMIQVRVINLTYMNLLPLPSSLGLLSN 258 (298)
Q Consensus 180 ~~~~~~~l~l~~~~~~~l~~~~~-~~~~~L~~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~l~~~~i~~lP~~i~~L~~ 258 (298)
....++.|.+++|.+..+++..+ ..+++|++|.+++ +.+..+|.. ..+++|++|++++|.++.+|+.++.+++
T Consensus 142 ~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~----N~l~~~~~~--~~l~~L~~L~Ls~N~l~~~~~~~~~l~~ 215 (487)
T 3oja_A 142 CRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQY----NFIYDVKGQ--VVFAKLKTLDLSSNKLAFMGPEFQSAAG 215 (487)
T ss_dssp GGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTT----SCCCEEECC--CCCTTCCEEECCSSCCCEECGGGGGGTT
T ss_pred CCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCC----Ccccccccc--ccCCCCCEEECCCCCCCCCCHhHcCCCC
Confidence 35789999999999987544433 3689999999998 556666552 4699999999999999999989999999
Q ss_pred CcEeecCCCCCCC-CcccCCCCCCCEEeecCCCCC
Q 040933 259 LRTLSLCYCKLLD-ISVTGELKKLEILCLRGSDIQ 292 (298)
Q Consensus 259 L~~L~l~~~~l~~-p~~i~~L~~L~~L~l~~~~l~ 292 (298)
|++|++++|.+.. |..++.+++|+.|++++|.+.
T Consensus 216 L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 216 VTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp CSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBC
T ss_pred ccEEEecCCcCcccchhhccCCCCCEEEcCCCCCc
Confidence 9999999999999 999999999999999999765
No 122
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.89 E-value=3.2e-09 Score=93.33 Aligned_cols=114 Identities=18% Similarity=0.137 Sum_probs=87.7
Q ss_pred ccCccEEEEeCCCCccCCCCcCCCCCCCcEEecccccccccccccChHHHhCCC-CccEEEecCCCCCCCCccccCCCCC
Q 040933 181 VKLYTSIVLRDIKTNVLPDRVLPECPQLKLFSVRADHQESSSLTIPNNFFEKMI-QVRVINLTYMNLLPLPSSLGLLSNL 259 (298)
Q Consensus 181 ~~~~~~l~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~lp~~~~~~l~-~Lr~L~l~~~~i~~lP~~i~~L~~L 259 (298)
..+++.+.+.+|.+..++...+....++..+.+.+ +..+..++...|..+. .+++|++++|+|+.+|..+....+|
T Consensus 103 l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~---~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L 179 (350)
T 4ay9_X 103 LPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQD---NINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQL 179 (350)
T ss_dssp CTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEES---CTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEE
T ss_pred ccccccccccccccccCCchhhcccchhhhhhhcc---ccccccccccchhhcchhhhhhccccccccCCChhhccccch
Confidence 45788888888888887776555666677777766 5667777776666654 5888999999998888887777888
Q ss_pred cEeecCCCC-CCC-Cc-ccCCCCCCCEEeecCCCCCCCCCC
Q 040933 260 RTLSLCYCK-LLD-IS-VTGELKKLEILCLRGSDIQQLPVE 297 (298)
Q Consensus 260 ~~L~l~~~~-l~~-p~-~i~~L~~L~~L~l~~~~l~~lP~~ 297 (298)
+.|+++++. ++. |. .++.+++|++|++++|+|+.+|.+
T Consensus 180 ~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~ 220 (350)
T 4ay9_X 180 DELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSY 220 (350)
T ss_dssp EEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSS
T ss_pred hHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChh
Confidence 899888654 777 54 578889999999999988888864
No 123
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.84 E-value=1e-08 Score=90.04 Aligned_cols=106 Identities=13% Similarity=0.093 Sum_probs=75.3
Q ss_pred hccCccEEEEeCCCCccCCCCcCCCCCCCcEEecccccccccccccChHHHhCCCCccE-EEecCCCCCCC-CccccCCC
Q 040933 180 AVKLYTSIVLRDIKTNVLPDRVLPECPQLKLFSVRADHQESSSLTIPNNFFEKMIQVRV-INLTYMNLLPL-PSSLGLLS 257 (298)
Q Consensus 180 ~~~~~~~l~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~-L~l~~~~i~~l-P~~i~~L~ 257 (298)
.+.+++.|.+.+|.++.++..+|.++++|++|++++ +.....+|...|..++++.. +.+.+|++..+ |..+..++
T Consensus 28 l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~---N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~ 104 (350)
T 4ay9_X 28 LPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQ---NDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLP 104 (350)
T ss_dssp CCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEEC---CTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCT
T ss_pred cCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcC---CCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhcc
Confidence 457899999999999999988889999999999998 44445677766777776654 55666777776 45567788
Q ss_pred CCcEeecCCCCCCC-C-cccCCCCCCCEEeecC
Q 040933 258 NLRTLSLCYCKLLD-I-SVTGELKKLEILCLRG 288 (298)
Q Consensus 258 ~L~~L~l~~~~l~~-p-~~i~~L~~L~~L~l~~ 288 (298)
+|++|++++|.+.. | ..+....++..|++.+
T Consensus 105 ~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~ 137 (350)
T 4ay9_X 105 NLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQD 137 (350)
T ss_dssp TCCEEEEEEECCSSCCCCTTCCBSSCEEEEEES
T ss_pred ccccccccccccccCCchhhcccchhhhhhhcc
Confidence 88888888777766 3 2233333444444443
No 124
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=98.84 E-value=1.8e-08 Score=95.07 Aligned_cols=113 Identities=19% Similarity=0.213 Sum_probs=90.3
Q ss_pred EEecCCccccCCCCCchhhccCccEEEEeCCCCccCCCCcCCCCCCCcEEecccccccccccccChHHHhCCCCccEEEe
Q 040933 162 FTATGELFDGCMEWSDENAVKLYTSIVLRDIKTNVLPDRVLPECPQLKLFSVRADHQESSSLTIPNNFFEKMIQVRVINL 241 (298)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~l 241 (298)
....+..+. ..|. ..+.+++.|.+.+|.+..+|. .+++|++|++++ +.+..+|. .+++|++|++
T Consensus 45 L~ls~n~L~---~lp~-~l~~~L~~L~L~~N~l~~lp~----~l~~L~~L~Ls~----N~l~~lp~----~l~~L~~L~L 108 (622)
T 3g06_A 45 LNVGESGLT---TLPD-CLPAHITTLVIPDNNLTSLPA----LPPELRTLEVSG----NQLTSLPV----LPPGLLELSI 108 (622)
T ss_dssp EECCSSCCS---CCCS-CCCTTCSEEEECSCCCSCCCC----CCTTCCEEEECS----CCCSCCCC----CCTTCCEEEE
T ss_pred EEecCCCcC---ccCh-hhCCCCcEEEecCCCCCCCCC----cCCCCCEEEcCC----CcCCcCCC----CCCCCCEEEC
Confidence 444444444 3343 234789999999999998886 478999999998 56777886 6789999999
Q ss_pred cCCCCCCCCccccCCCCCcEeecCCCCCCC-CcccCCCCCCCEEeecCCCCCCCCC
Q 040933 242 TYMNLLPLPSSLGLLSNLRTLSLCYCKLLD-ISVTGELKKLEILCLRGSDIQQLPV 296 (298)
Q Consensus 242 ~~~~i~~lP~~i~~L~~L~~L~l~~~~l~~-p~~i~~L~~L~~L~l~~~~l~~lP~ 296 (298)
++|.++.+|. .+.+|++|++++|.++. |.. +++|++|++++|++..+|.
T Consensus 109 s~N~l~~l~~---~l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N~l~~l~~ 158 (622)
T 3g06_A 109 FSNPLTHLPA---LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLASLPA 158 (622)
T ss_dssp CSCCCCCCCC---CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSCCCC
T ss_pred cCCcCCCCCC---CCCCcCEEECCCCCCCcCCCC---CCCCCEEECcCCcCCCcCC
Confidence 9999999987 66889999999999888 764 4889999999998888775
No 125
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=98.84 E-value=2e-08 Score=91.66 Aligned_cols=60 Identities=18% Similarity=0.306 Sum_probs=25.1
Q ss_pred hCCCCccEEEecCCCCCCCCccccCCCCCcEeecCCCCCCCCcccCCCCCCCEEeecCCCC
Q 040933 231 EKMIQVRVINLTYMNLLPLPSSLGLLSNLRTLSLCYCKLLDISVTGELKKLEILCLRGSDI 291 (298)
Q Consensus 231 ~~l~~Lr~L~l~~~~i~~lP~~i~~L~~L~~L~l~~~~l~~p~~i~~L~~L~~L~l~~~~l 291 (298)
..+++|++|++++|.+..+++ ++.+++|++|++++|.+...+.++++++|+.|++++|++
T Consensus 306 ~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l 365 (466)
T 1o6v_A 306 SNLKNLTYLTLYFNNISDISP-VSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQI 365 (466)
T ss_dssp GGCTTCSEEECCSSCCSCCGG-GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCC
T ss_pred cCCCCCCEEECcCCcCCCchh-hccCccCCEeECCCCccCCchhhccCCCCCEEeCCCCcc
Confidence 344444444444444444332 334444444444444433322344444444444444433
No 126
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=98.84 E-value=4e-08 Score=92.79 Aligned_cols=103 Identities=18% Similarity=0.177 Sum_probs=82.6
Q ss_pred hccCccEEEEeCCCCccCCCCcCCCCCCCcEEecccccccccccccChHHHhCCCCccEEEecCCCCCCCCccccCCCCC
Q 040933 180 AVKLYTSIVLRDIKTNVLPDRVLPECPQLKLFSVRADHQESSSLTIPNNFFEKMIQVRVINLTYMNLLPLPSSLGLLSNL 259 (298)
Q Consensus 180 ~~~~~~~l~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~l~~~~i~~lP~~i~~L~~L 259 (298)
.+.+++.|.+.+|.+..+|. .+++|+.|.+++ +.+..+|. .+++|+.|++++|+++.+|.. +++|
T Consensus 79 ~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~----N~l~~l~~----~l~~L~~L~L~~N~l~~lp~~---l~~L 143 (622)
T 3g06_A 79 LPPELRTLEVSGNQLTSLPV----LPPGLLELSIFS----NPLTHLPA----LPSGLCKLWIFGNQLTSLPVL---PPGL 143 (622)
T ss_dssp CCTTCCEEEECSCCCSCCCC----CCTTCCEEEECS----CCCCCCCC----CCTTCCEEECCSSCCSCCCCC---CTTC
T ss_pred cCCCCCEEEcCCCcCCcCCC----CCCCCCEEECcC----CcCCCCCC----CCCCcCEEECCCCCCCcCCCC---CCCC
Confidence 56789999999999998886 579999999988 66777776 568899999999999999865 4789
Q ss_pred cEeecCCCCCCC-CcccCCC-----------------CCCCEEeecCCCCCCCCCC
Q 040933 260 RTLSLCYCKLLD-ISVTGEL-----------------KKLEILCLRGSDIQQLPVE 297 (298)
Q Consensus 260 ~~L~l~~~~l~~-p~~i~~L-----------------~~L~~L~l~~~~l~~lP~~ 297 (298)
++|++++|.++. |..+.+| ++|+.|++++|++..+|..
T Consensus 144 ~~L~Ls~N~l~~l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~l~~l~~~ 199 (622)
T 3g06_A 144 QELSVSDNQLASLPALPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQLASLPTL 199 (622)
T ss_dssp CEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCCCC
T ss_pred CEEECcCCcCCCcCCccCCCCEEECCCCCCCCCcccCCCCcEEECCCCCCCCCCCc
Confidence 999999998877 5433332 6777788887777777753
No 127
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.84 E-value=5.6e-09 Score=91.51 Aligned_cols=83 Identities=14% Similarity=0.092 Sum_probs=72.2
Q ss_pred EEecccccccccccccChHHHhCCCCccEEEecC-CCCCCCC-ccccCCCCCcEeecCCCCCCC--CcccCCCCCCCEEe
Q 040933 210 LFSVRADHQESSSLTIPNNFFEKMIQVRVINLTY-MNLLPLP-SSLGLLSNLRTLSLCYCKLLD--ISVTGELKKLEILC 285 (298)
Q Consensus 210 ~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~l~~-~~i~~lP-~~i~~L~~L~~L~l~~~~l~~--p~~i~~L~~L~~L~ 285 (298)
.+...+ .+.+..+|. +..+.+|++|+|++ |.++.+| ..++.|.+|++|+|++|.++. |..|++|++|++|+
T Consensus 12 ~v~~~~---~n~l~~ip~--l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~ 86 (347)
T 2ifg_A 12 GLRCTR---DGALDSLHH--LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLN 86 (347)
T ss_dssp CEECCS---SCCCTTTTT--SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEE
T ss_pred EEEcCC---CCCCCccCC--CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEe
Confidence 345554 337888998 59999999999996 9999987 679999999999999999998 56789999999999
Q ss_pred ecCCCCCCCCCC
Q 040933 286 LRGSDIQQLPVE 297 (298)
Q Consensus 286 l~~~~l~~lP~~ 297 (298)
|++|+|..+|..
T Consensus 87 l~~N~l~~~~~~ 98 (347)
T 2ifg_A 87 LSFNALESLSWK 98 (347)
T ss_dssp CCSSCCSCCCST
T ss_pred CCCCccceeCHH
Confidence 999999999865
No 128
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=98.83 E-value=4.7e-08 Score=89.07 Aligned_cols=105 Identities=12% Similarity=0.051 Sum_probs=75.1
Q ss_pred hhccCccEEEEeCCCCccCCCCcCCCCCCCcEEecccccccccccccChHHHhCCCCccEEEecCCCCCCCCccccCCCC
Q 040933 179 NAVKLYTSIVLRDIKTNVLPDRVLPECPQLKLFSVRADHQESSSLTIPNNFFEKMIQVRVINLTYMNLLPLPSSLGLLSN 258 (298)
Q Consensus 179 ~~~~~~~~l~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~l~~~~i~~lP~~i~~L~~ 258 (298)
....+++.+.+.+|.+..++ +..+++|+.|.+.+ +.+..+| +..+++|++|++++|.++.+| ++.+.+
T Consensus 82 ~~l~~L~~L~Ls~N~l~~~~---~~~l~~L~~L~L~~----N~l~~l~---~~~l~~L~~L~l~~N~l~~l~--l~~l~~ 149 (457)
T 3bz5_A 82 SQNTNLTYLACDSNKLTNLD---VTPLTKLTYLNCDT----NKLTKLD---VSQNPLLTYLNCARNTLTEID--VSHNTQ 149 (457)
T ss_dssp TTCTTCSEEECCSSCCSCCC---CTTCTTCCEEECCS----SCCSCCC---CTTCTTCCEEECTTSCCSCCC--CTTCTT
T ss_pred ccCCCCCEEECcCCCCceee---cCCCCcCCEEECCC----CcCCeec---CCCCCcCCEEECCCCccceec--cccCCc
Confidence 34567778888888777764 37777888888876 4555555 477788888888888877774 777788
Q ss_pred CcEeecCCCCCCCCcccCCCCCCCEEeecCCCCCCCC
Q 040933 259 LRTLSLCYCKLLDISVTGELKKLEILCLRGSDIQQLP 295 (298)
Q Consensus 259 L~~L~l~~~~l~~p~~i~~L~~L~~L~l~~~~l~~lP 295 (298)
|++|++++|.....-.++.+++|++|++++|++..+|
T Consensus 150 L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~l~ 186 (457)
T 3bz5_A 150 LTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITELD 186 (457)
T ss_dssp CCEEECTTCSCCCCCCCTTCTTCCEEECCSSCCCCCC
T ss_pred CCEEECCCCCcccccccccCCcCCEEECCCCccceec
Confidence 8888888875333114677788888888888777665
No 129
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=98.82 E-value=2.3e-08 Score=91.07 Aligned_cols=101 Identities=17% Similarity=0.255 Sum_probs=57.8
Q ss_pred cCccEEEEeCCCCccCCCCcCCCCCCCcEEecccccccccccccChHHHhCCCCccEEEecCCCCCCCCccccCCCCCcE
Q 040933 182 KLYTSIVLRDIKTNVLPDRVLPECPQLKLFSVRADHQESSSLTIPNNFFEKMIQVRVINLTYMNLLPLPSSLGLLSNLRT 261 (298)
Q Consensus 182 ~~~~~l~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~l~~~~i~~lP~~i~~L~~L~~ 261 (298)
.+++.+.+.+|.+..++.. .++|++|.+.+ +.+..+|. |..+++|++|++++|.++.+|..+ .+|++
T Consensus 111 ~~L~~L~l~~n~l~~l~~~----~~~L~~L~L~~----n~l~~lp~--~~~l~~L~~L~l~~N~l~~lp~~~---~~L~~ 177 (454)
T 1jl5_A 111 QSLKSLLVDNNNLKALSDL----PPLLEYLGVSN----NQLEKLPE--LQNSSFLKIIDVDNNSLKKLPDLP---PSLEF 177 (454)
T ss_dssp TTCCEEECCSSCCSCCCSC----CTTCCEEECCS----SCCSSCCC--CTTCTTCCEEECCSSCCSCCCCCC---TTCCE
T ss_pred CCCcEEECCCCccCcccCC----CCCCCEEECcC----CCCCCCcc--cCCCCCCCEEECCCCcCcccCCCc---ccccE
Confidence 3455555555555444322 14566666665 34445553 466666666666666666666433 35666
Q ss_pred eecCCCCCCC-CcccCCCCCCCEEeecCCCCCCCCC
Q 040933 262 LSLCYCKLLD-ISVTGELKKLEILCLRGSDIQQLPV 296 (298)
Q Consensus 262 L~l~~~~l~~-p~~i~~L~~L~~L~l~~~~l~~lP~ 296 (298)
|++++|.++. | .++++++|++|++++|++..+|.
T Consensus 178 L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~l~~l~~ 212 (454)
T 1jl5_A 178 IAAGNNQLEELP-ELQNLPFLTAIYADNNSLKKLPD 212 (454)
T ss_dssp EECCSSCCSSCC-CCTTCTTCCEEECCSSCCSSCCC
T ss_pred EECcCCcCCcCc-cccCCCCCCEEECCCCcCCcCCC
Confidence 6666666666 4 46666666666666666555543
No 130
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.82 E-value=7.7e-11 Score=95.17 Aligned_cols=104 Identities=21% Similarity=0.246 Sum_probs=82.5
Q ss_pred hccCccEEEEeCCCCccCCCCcCCCCCCCcEEecccccccccccccChHHHhCCCCccEEEecCCCCCCCCccccCCCCC
Q 040933 180 AVKLYTSIVLRDIKTNVLPDRVLPECPQLKLFSVRADHQESSSLTIPNNFFEKMIQVRVINLTYMNLLPLPSSLGLLSNL 259 (298)
Q Consensus 180 ~~~~~~~l~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~l~~~~i~~lP~~i~~L~~L 259 (298)
....++.+.+.+|.+..++ .+..+++|+.|.+.+ +.+..+|..+ ..+++|++|++++|.++.+| .++.+++|
T Consensus 46 ~l~~L~~L~ls~n~l~~l~--~~~~l~~L~~L~l~~----n~l~~l~~~~-~~~~~L~~L~L~~N~l~~l~-~~~~l~~L 117 (198)
T 1ds9_A 46 TLKACKHLALSTNNIEKIS--SLSGMENLRILSLGR----NLIKKIENLD-AVADTLEELWISYNQIASLS-GIEKLVNL 117 (198)
T ss_dssp HTTTCSEEECSEEEESCCC--CHHHHTTCCEEEEEE----EEECSCSSHH-HHHHHCSEEEEEEEECCCHH-HHHHHHHS
T ss_pred cCCCCCEEECCCCCCcccc--ccccCCCCCEEECCC----CCcccccchh-hcCCcCCEEECcCCcCCcCC-ccccCCCC
Confidence 4567888888888888877 347788888888887 5566777644 67788888888888888877 68888888
Q ss_pred cEeecCCCCCCC-C--cccCCCCCCCEEeecCCCC
Q 040933 260 RTLSLCYCKLLD-I--SVTGELKKLEILCLRGSDI 291 (298)
Q Consensus 260 ~~L~l~~~~l~~-p--~~i~~L~~L~~L~l~~~~l 291 (298)
++|++++|.+.. | ..++.+++|++|++++|.+
T Consensus 118 ~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l 152 (198)
T 1ds9_A 118 RVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPL 152 (198)
T ss_dssp SEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHH
T ss_pred CEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcc
Confidence 888888888887 4 3688888888888888865
No 131
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=98.77 E-value=7.6e-08 Score=87.60 Aligned_cols=62 Identities=16% Similarity=0.110 Sum_probs=31.3
Q ss_pred hCCCCccEEEecCCCCCCCCccccCCCCCcEeecCCCCCCC-CcccCCCCCCCEEeecCCCCCCCCC
Q 040933 231 EKMIQVRVINLTYMNLLPLPSSLGLLSNLRTLSLCYCKLLD-ISVTGELKKLEILCLRGSDIQQLPV 296 (298)
Q Consensus 231 ~~l~~Lr~L~l~~~~i~~lP~~i~~L~~L~~L~l~~~~l~~-p~~i~~L~~L~~L~l~~~~l~~lP~ 296 (298)
..+++|++|++++|.++.+|... .+|++|++++|.+.. | .++.+++|++|++++|++..+|.
T Consensus 192 ~~l~~L~~L~l~~N~l~~l~~~~---~~L~~L~l~~n~l~~lp-~~~~l~~L~~L~l~~N~l~~l~~ 254 (454)
T 1jl5_A 192 QNLPFLTAIYADNNSLKKLPDLP---LSLESIVAGNNILEELP-ELQNLPFLTTIYADNNLLKTLPD 254 (454)
T ss_dssp TTCTTCCEEECCSSCCSSCCCCC---TTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSSCCS
T ss_pred cCCCCCCEEECCCCcCCcCCCCc---CcccEEECcCCcCCccc-ccCCCCCCCEEECCCCcCCcccc
Confidence 44444444444444444443221 244455555555444 4 35566666666666666555553
No 132
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.70 E-value=5.6e-11 Score=95.99 Aligned_cols=104 Identities=13% Similarity=0.196 Sum_probs=84.8
Q ss_pred ccEEEEeCC--CCccCCCCcCCCCCCCcEEecccccccccccccChHHHhCCCCccEEEecCCCCCCCCccccCCCCCcE
Q 040933 184 YTSIVLRDI--KTNVLPDRVLPECPQLKLFSVRADHQESSSLTIPNNFFEKMIQVRVINLTYMNLLPLPSSLGLLSNLRT 261 (298)
Q Consensus 184 ~~~l~l~~~--~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~l~~~~i~~lP~~i~~L~~L~~ 261 (298)
++...+... .++.++. .+..+++|++|.+++ +.+..+| . +..+++|++|++++|.++.+|..++.+++|++
T Consensus 25 l~~~~l~~~~~~l~~l~~-~~~~l~~L~~L~ls~----n~l~~l~-~-~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~ 97 (198)
T 1ds9_A 25 AEKVELHGMIPPIEKMDA-TLSTLKACKHLALST----NNIEKIS-S-LSGMENLRILSLGRNLIKKIENLDAVADTLEE 97 (198)
T ss_dssp CSEEECCBCCTTCCCCHH-HHHHTTTCSEEECSE----EEESCCC-C-HHHHTTCCEEEEEEEEECSCSSHHHHHHHCSE
T ss_pred hheeEeccccCcHhhhhH-HHhcCCCCCEEECCC----CCCcccc-c-cccCCCCCEEECCCCCcccccchhhcCCcCCE
Confidence 444444432 4444544 347789999999998 5667788 3 58999999999999999999988888899999
Q ss_pred eecCCCCCCC-CcccCCCCCCCEEeecCCCCCCCC
Q 040933 262 LSLCYCKLLD-ISVTGELKKLEILCLRGSDIQQLP 295 (298)
Q Consensus 262 L~l~~~~l~~-p~~i~~L~~L~~L~l~~~~l~~lP 295 (298)
|++++|.++. | .++.+++|++|++++|++..+|
T Consensus 98 L~L~~N~l~~l~-~~~~l~~L~~L~l~~N~i~~~~ 131 (198)
T 1ds9_A 98 LWISYNQIASLS-GIEKLVNLRVLYMSNNKITNWG 131 (198)
T ss_dssp EEEEEEECCCHH-HHHHHHHSSEEEESEEECCCHH
T ss_pred EECcCCcCCcCC-ccccCCCCCEEECCCCcCCchh
Confidence 9999999999 6 7899999999999999887654
No 133
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=98.49 E-value=5.2e-08 Score=84.73 Aligned_cols=105 Identities=22% Similarity=0.287 Sum_probs=71.5
Q ss_pred hccCccEEEEeCCCCcc--CCCCcCCCCCCCcEEecccccccccccccChHHHhCCCCccEEEecCC-CCCC--CCcccc
Q 040933 180 AVKLYTSIVLRDIKTNV--LPDRVLPECPQLKLFSVRADHQESSSLTIPNNFFEKMIQVRVINLTYM-NLLP--LPSSLG 254 (298)
Q Consensus 180 ~~~~~~~l~l~~~~~~~--l~~~~~~~~~~L~~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~l~~~-~i~~--lP~~i~ 254 (298)
...+++.+.+.+|.+.. ++. .+..+++|+.|.+.+ +......+.. +..+++|++|++++| .++. +|..++
T Consensus 91 ~~~~L~~L~L~~~~l~~~~~~~-~~~~~~~L~~L~L~~---~~l~~~~~~~-l~~~~~L~~L~L~~~~~l~~~~l~~~~~ 165 (336)
T 2ast_B 91 SPFRVQHMDLSNSVIEVSTLHG-ILSQCSKLQNLSLEG---LRLSDPIVNT-LAKNSNLVRLNLSGCSGFSEFALQTLLS 165 (336)
T ss_dssp CCBCCCEEECTTCEECHHHHHH-HHTTBCCCSEEECTT---CBCCHHHHHH-HTTCTTCSEEECTTCBSCCHHHHHHHHH
T ss_pred cCCCCCEEEccCCCcCHHHHHH-HHhhCCCCCEEeCcC---cccCHHHHHH-HhcCCCCCEEECCCCCCCCHHHHHHHHh
Confidence 34677778877776543 222 246677888888877 3322233443 367888888888888 6663 666677
Q ss_pred CCCCCcEeecCCC-CCCC---CcccCCCC-CCCEEeecCC
Q 040933 255 LLSNLRTLSLCYC-KLLD---ISVTGELK-KLEILCLRGS 289 (298)
Q Consensus 255 ~L~~L~~L~l~~~-~l~~---p~~i~~L~-~L~~L~l~~~ 289 (298)
.+++|++|++++| .++. +..++.++ +|++|++++|
T Consensus 166 ~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~ 205 (336)
T 2ast_B 166 SCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGY 205 (336)
T ss_dssp HCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSC
T ss_pred cCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCC
Confidence 7888888888888 6764 55677777 8888888887
No 134
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.41 E-value=3.5e-08 Score=87.71 Aligned_cols=112 Identities=17% Similarity=0.108 Sum_probs=77.6
Q ss_pred ccCccEEEEeCCCCccCCCC----cCCCCCCCcEEecccccccccccccChHH------HhCCCCccEEEecCCCCCC--
Q 040933 181 VKLYTSIVLRDIKTNVLPDR----VLPECPQLKLFSVRADHQESSSLTIPNNF------FEKMIQVRVINLTYMNLLP-- 248 (298)
Q Consensus 181 ~~~~~~l~l~~~~~~~l~~~----~~~~~~~L~~L~l~~~~~~~~~~~lp~~~------~~~l~~Lr~L~l~~~~i~~-- 248 (298)
...++.|.+.+|.+...... .+..+++|++|.++++..+.....+|..+ |..+++|++|++++|.+..
T Consensus 31 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~ 110 (386)
T 2ca6_A 31 DDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTA 110 (386)
T ss_dssp CSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTT
T ss_pred CCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHH
Confidence 45688888888877543111 24678889999888732112222344433 3678899999999998876
Q ss_pred ---CCccccCCCCCcEeecCCCCCCC--CcccC----CC---------CCCCEEeecCCCCC
Q 040933 249 ---LPSSLGLLSNLRTLSLCYCKLLD--ISVTG----EL---------KKLEILCLRGSDIQ 292 (298)
Q Consensus 249 ---lP~~i~~L~~L~~L~l~~~~l~~--p~~i~----~L---------~~L~~L~l~~~~l~ 292 (298)
+|..+..+++|++|++++|.+.. +..++ .+ ++|++|++++|++.
T Consensus 111 ~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~ 172 (386)
T 2ca6_A 111 QEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLE 172 (386)
T ss_dssp HHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCT
T ss_pred HHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCC
Confidence 67788888899999999988764 33333 33 78888888888775
No 135
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=98.34 E-value=3.3e-08 Score=85.96 Aligned_cols=108 Identities=13% Similarity=0.166 Sum_probs=82.1
Q ss_pred ccCccEEEEeCCCCccCCCCcCCCCCCCcEEecccccccccccc--cChHHHhCCCCccEEEecCC-CCCC--CCccccC
Q 040933 181 VKLYTSIVLRDIKTNVLPDRVLPECPQLKLFSVRADHQESSSLT--IPNNFFEKMIQVRVINLTYM-NLLP--LPSSLGL 255 (298)
Q Consensus 181 ~~~~~~l~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~--lp~~~~~~l~~Lr~L~l~~~-~i~~--lP~~i~~ 255 (298)
..+++.+.+.+|.+.......+..+++|++|.+.+ +..+.. ++. .+..+++|++|++++| .++. +|..++.
T Consensus 117 ~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~---~~~l~~~~l~~-~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~ 192 (336)
T 2ast_B 117 CSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSG---CSGFSEFALQT-LLSSCSRLDELNLSWCFDFTEKHVQVAVAH 192 (336)
T ss_dssp BCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTT---CBSCCHHHHHH-HHHHCTTCCEEECCCCTTCCHHHHHHHHHH
T ss_pred CCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCC---CCCCCHHHHHH-HHhcCCCCCEEcCCCCCCcChHHHHHHHHh
Confidence 46888999998877533222346689999999988 434442 443 3488999999999999 8875 6777888
Q ss_pred CC-CCcEeecCCC--CCCC---CcccCCCCCCCEEeecCCC-CC
Q 040933 256 LS-NLRTLSLCYC--KLLD---ISVTGELKKLEILCLRGSD-IQ 292 (298)
Q Consensus 256 L~-~L~~L~l~~~--~l~~---p~~i~~L~~L~~L~l~~~~-l~ 292 (298)
++ +|++|++++| .+.. |..++++++|++|++++|. +.
T Consensus 193 l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~ 236 (336)
T 2ast_B 193 VSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLK 236 (336)
T ss_dssp SCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCC
T ss_pred cccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCC
Confidence 99 9999999999 4542 6777889999999999996 54
No 136
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.29 E-value=1.2e-07 Score=83.68 Aligned_cols=107 Identities=14% Similarity=0.165 Sum_probs=61.1
Q ss_pred CccEEEEeCCCCccCCCCcCCC-----CCCCcEEecccccccccccccChHH----HhCC-CCccEEEecCCCCCCCCc-
Q 040933 183 LYTSIVLRDIKTNVLPDRVLPE-----CPQLKLFSVRADHQESSSLTIPNNF----FEKM-IQVRVINLTYMNLLPLPS- 251 (298)
Q Consensus 183 ~~~~l~l~~~~~~~l~~~~~~~-----~~~L~~L~l~~~~~~~~~~~lp~~~----~~~l-~~Lr~L~l~~~~i~~lP~- 251 (298)
+++.|.+.+|.+.......+.. +++|+.|.+++ +.+...+... +..+ ++|++|++++|.++..+.
T Consensus 52 ~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~----n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~ 127 (362)
T 3goz_A 52 SVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSG----NFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSS 127 (362)
T ss_dssp TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCS----SCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHH
T ss_pred ceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcC----CcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHH
Confidence 5677777777665543322222 26677777776 3344333321 2333 677777777777766542
Q ss_pred cc----cC-CCCCcEeecCCCCCCC------CcccCCCC-CCCEEeecCCCCCC
Q 040933 252 SL----GL-LSNLRTLSLCYCKLLD------ISVTGELK-KLEILCLRGSDIQQ 293 (298)
Q Consensus 252 ~i----~~-L~~L~~L~l~~~~l~~------p~~i~~L~-~L~~L~l~~~~l~~ 293 (298)
.+ .. ..+|++|++++|.+.. +..+..++ +|++|++++|++..
T Consensus 128 ~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~ 181 (362)
T 3goz_A 128 EFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLAS 181 (362)
T ss_dssp HHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGG
T ss_pred HHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCch
Confidence 22 22 2467777777777663 23344454 77777777776654
No 137
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.27 E-value=8.4e-08 Score=85.27 Aligned_cols=108 Identities=18% Similarity=0.170 Sum_probs=78.1
Q ss_pred cCccEEEEeCCCCc--cCCC--CcCCCCCCCcEEecccccccccccc-----cChHHHhCCCCccEEEecCCCC-----C
Q 040933 182 KLYTSIVLRDIKTN--VLPD--RVLPECPQLKLFSVRADHQESSSLT-----IPNNFFEKMIQVRVINLTYMNL-----L 247 (298)
Q Consensus 182 ~~~~~l~l~~~~~~--~l~~--~~~~~~~~L~~L~l~~~~~~~~~~~-----lp~~~~~~l~~Lr~L~l~~~~i-----~ 247 (298)
..++.|.+.+|.+. .++. ..+..+++|++|.+.+ +.+.. +.+..+..+++|++|++++|.+ .
T Consensus 159 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~----n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~ 234 (386)
T 2ca6_A 159 PPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQ----NGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSS 234 (386)
T ss_dssp CCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCS----SCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHH
T ss_pred CCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcC----CCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHH
Confidence 68888888888875 2221 1234677889998887 33331 2221347888999999999988 4
Q ss_pred CCCccccCCCCCcEeecCCCCCCC------Cccc--CCCCCCCEEeecCCCCCC
Q 040933 248 PLPSSLGLLSNLRTLSLCYCKLLD------ISVT--GELKKLEILCLRGSDIQQ 293 (298)
Q Consensus 248 ~lP~~i~~L~~L~~L~l~~~~l~~------p~~i--~~L~~L~~L~l~~~~l~~ 293 (298)
.+|..+..+++|++|++++|.+.. |..+ +++++|++|++++|.+..
T Consensus 235 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~ 288 (386)
T 2ca6_A 235 ALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIEL 288 (386)
T ss_dssp HHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBH
T ss_pred HHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCH
Confidence 478888888999999999998775 2344 458899999999988765
No 138
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.19 E-value=2.1e-07 Score=81.98 Aligned_cols=108 Identities=18% Similarity=0.165 Sum_probs=82.4
Q ss_pred ccCccEEEEeCCCCccCCC----CcCCCCC-CCcEEecccccccccccccChHHHhCC-----CCccEEEecCCCCCCCC
Q 040933 181 VKLYTSIVLRDIKTNVLPD----RVLPECP-QLKLFSVRADHQESSSLTIPNNFFEKM-----IQVRVINLTYMNLLPLP 250 (298)
Q Consensus 181 ~~~~~~l~l~~~~~~~l~~----~~~~~~~-~L~~L~l~~~~~~~~~~~lp~~~~~~l-----~~Lr~L~l~~~~i~~lP 250 (298)
+..++.|.+.+|.+...+. ..+..++ +|+.|.+++ +.+.......|..+ ++|++|++++|.++..+
T Consensus 21 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~----N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~ 96 (362)
T 3goz_A 21 PHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSG----NSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKS 96 (362)
T ss_dssp CTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCS----SCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSC
T ss_pred CCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcC----CCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHH
Confidence 4569999999999988775 3456777 899999998 45555544434443 99999999999998754
Q ss_pred -cc----ccCC-CCCcEeecCCCCCCC-C-cc----cCCC-CCCCEEeecCCCCC
Q 040933 251 -SS----LGLL-SNLRTLSLCYCKLLD-I-SV----TGEL-KKLEILCLRGSDIQ 292 (298)
Q Consensus 251 -~~----i~~L-~~L~~L~l~~~~l~~-p-~~----i~~L-~~L~~L~l~~~~l~ 292 (298)
.. +..+ .+|++|++++|.+.. + .. +..+ .+|++|++++|++.
T Consensus 97 ~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~ 151 (362)
T 3goz_A 97 SDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLG 151 (362)
T ss_dssp HHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGG
T ss_pred HHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCC
Confidence 33 4444 799999999999877 3 33 3443 69999999999876
No 139
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.17 E-value=3.4e-06 Score=73.19 Aligned_cols=100 Identities=13% Similarity=0.114 Sum_probs=86.2
Q ss_pred ccCccEEEEeCCCCccCCCCcCCCCCCCcEEecccccccccccccChHHHhCCCCcc-EEEecCCCCCCCC-ccccCCCC
Q 040933 181 VKLYTSIVLRDIKTNVLPDRVLPECPQLKLFSVRADHQESSSLTIPNNFFEKMIQVR-VINLTYMNLLPLP-SSLGLLSN 258 (298)
Q Consensus 181 ~~~~~~l~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~lp~~~~~~l~~Lr-~L~l~~~~i~~lP-~~i~~L~~ 258 (298)
...++.+.+.+|.+..++..+|.++++|+.+.+.. + +..+++..|..+.+|+ .+++.. +++.++ ..+..+.+
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~----n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~ 298 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPH----N-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDN 298 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCT----T-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTT
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCc----c-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCcc
Confidence 46788999998889999999999999999999887 2 7889999899999999 999988 777764 67889999
Q ss_pred CcEeecCCCCCCC--CcccCCCCCCCEEee
Q 040933 259 LRTLSLCYCKLLD--ISVTGELKKLEILCL 286 (298)
Q Consensus 259 L~~L~l~~~~l~~--p~~i~~L~~L~~L~l 286 (298)
|+.++++++.+.. +..|.++++|+.+..
T Consensus 299 L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 299 LRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp EEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred CCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 9999999988888 567888999998864
No 140
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.05 E-value=6.2e-07 Score=81.31 Aligned_cols=34 Identities=32% Similarity=0.461 Sum_probs=16.6
Q ss_pred CCcEeecCCCCCCC------CcccCCCCCCCEEeecCCCC
Q 040933 258 NLRTLSLCYCKLLD------ISVTGELKKLEILCLRGSDI 291 (298)
Q Consensus 258 ~L~~L~l~~~~l~~------p~~i~~L~~L~~L~l~~~~l 291 (298)
+|++|++++|.+.. +..+..+++|++|++++|.+
T Consensus 143 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i 182 (461)
T 1z7x_W 143 RLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDI 182 (461)
T ss_dssp CCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBC
T ss_pred cceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCc
Confidence 45555555554443 22333445555555555543
No 141
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=97.95 E-value=9.2e-07 Score=80.16 Aligned_cols=109 Identities=19% Similarity=0.190 Sum_probs=81.3
Q ss_pred hccCccEEEEeCCCCcc-----CCCCcCCCCCCCcEEecccccccccccc-cChHHHhCCC----CccEEEecCCCCC--
Q 040933 180 AVKLYTSIVLRDIKTNV-----LPDRVLPECPQLKLFSVRADHQESSSLT-IPNNFFEKMI----QVRVINLTYMNLL-- 247 (298)
Q Consensus 180 ~~~~~~~l~l~~~~~~~-----l~~~~~~~~~~L~~L~l~~~~~~~~~~~-lp~~~~~~l~----~Lr~L~l~~~~i~-- 247 (298)
..++++.+.+.+|.+.. ++. .+..+++|++|.+++ +.+.. .+..++..++ +|++|++++|.++
T Consensus 26 ~~~~L~~L~L~~~~l~~~~~~~l~~-~l~~~~~L~~L~Ls~----n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~ 100 (461)
T 1z7x_W 26 LLQQCQVVRLDDCGLTEARCKDISS-ALRVNPALAELNLRS----NELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGA 100 (461)
T ss_dssp HHTTCSEEEEESSCCCHHHHHHHHH-HHHTCTTCCEEECTT----CCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGG
T ss_pred hcCCccEEEccCCCCCHHHHHHHHH-HHHhCCCcCEEeCCC----CcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHH
Confidence 45689999999998763 232 246678999999988 33333 3444555666 6999999999988
Q ss_pred ---CCCccccCCCCCcEeecCCCCCCC--CcccC-----CCCCCCEEeecCCCCCC
Q 040933 248 ---PLPSSLGLLSNLRTLSLCYCKLLD--ISVTG-----ELKKLEILCLRGSDIQQ 293 (298)
Q Consensus 248 ---~lP~~i~~L~~L~~L~l~~~~l~~--p~~i~-----~L~~L~~L~l~~~~l~~ 293 (298)
.+|..+..+++|++|++++|.+.. +..+. ..++|++|++++|++..
T Consensus 101 ~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~ 156 (461)
T 1z7x_W 101 GCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSA 156 (461)
T ss_dssp GHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBG
T ss_pred HHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCH
Confidence 368888999999999999999875 43332 35689999999998764
No 142
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=97.88 E-value=1.7e-05 Score=68.75 Aligned_cols=87 Identities=21% Similarity=0.206 Sum_probs=76.8
Q ss_pred CCCCcEEecccccccccccccChHHHhCCCCccEEEecCCCCCCCC-ccccCCCCCc-EeecCCCCCCC--CcccCCCCC
Q 040933 205 CPQLKLFSVRADHQESSSLTIPNNFFEKMIQVRVINLTYMNLLPLP-SSLGLLSNLR-TLSLCYCKLLD--ISVTGELKK 280 (298)
Q Consensus 205 ~~~L~~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~l~~~~i~~lP-~~i~~L~~L~-~L~l~~~~l~~--p~~i~~L~~ 280 (298)
+++|+++.+.+ +.+..+|+..|..+.+|+.+++..+ ++.++ ..+..+.+|+ .+.+.+ .++. +..|..+.+
T Consensus 225 ~~~L~~l~L~~----n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~ 298 (329)
T 3sb4_A 225 MPNLVSLDISK----TNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDN 298 (329)
T ss_dssp CTTCCEEECTT----BCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTT
T ss_pred cCCCeEEECCC----CCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCcc
Confidence 78999999987 6688999999999999999999997 77775 5688999999 999998 7777 688999999
Q ss_pred CCEEeecCCCCCCCCCC
Q 040933 281 LEILCLRGSDIQQLPVE 297 (298)
Q Consensus 281 L~~L~l~~~~l~~lP~~ 297 (298)
|+.++++++++..++..
T Consensus 299 L~~l~l~~n~i~~I~~~ 315 (329)
T 3sb4_A 299 LRYVLATGDKITTLGDE 315 (329)
T ss_dssp EEEEEECSSCCCEECTT
T ss_pred CCEEEeCCCccCccchh
Confidence 99999999988887753
No 143
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.88 E-value=5e-06 Score=65.12 Aligned_cols=84 Identities=15% Similarity=0.225 Sum_probs=58.6
Q ss_pred CCCcEEecccccccccccccChHHHhCCCCccEEEecCC-CCCCC-CccccCC----CCCcEeecCCCC-CCC--CcccC
Q 040933 206 PQLKLFSVRADHQESSSLTIPNNFFEKMIQVRVINLTYM-NLLPL-PSSLGLL----SNLRTLSLCYCK-LLD--ISVTG 276 (298)
Q Consensus 206 ~~L~~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~l~~~-~i~~l-P~~i~~L----~~L~~L~l~~~~-l~~--p~~i~ 276 (298)
.+|+.|++++ +. +....-..+..+++|+.|+|++| .|+.- -..++.+ .+|++|++++|. ++. ...+.
T Consensus 61 ~~L~~LDLs~---~~-Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~ 136 (176)
T 3e4g_A 61 YKIQAIDATD---SC-IMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALH 136 (176)
T ss_dssp CCEEEEEEES---CC-CCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGG
T ss_pred ceEeEEeCcC---CC-ccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHh
Confidence 4678888887 33 33322222478889999999998 56641 1345554 368999999987 777 66778
Q ss_pred CCCCCCEEeecCC-CCCC
Q 040933 277 ELKKLEILCLRGS-DIQQ 293 (298)
Q Consensus 277 ~L~~L~~L~l~~~-~l~~ 293 (298)
++++|++|++++| +++.
T Consensus 137 ~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 137 HFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp GCTTCCEEEEESCTTCCC
T ss_pred cCCCCCEEECCCCCCCCc
Confidence 8899999999998 4653
No 144
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.87 E-value=1e-05 Score=67.99 Aligned_cols=77 Identities=19% Similarity=0.229 Sum_probs=43.3
Q ss_pred CCCCCcEEecccccccccccccCh--HHHhCCCCccEEEecCCCCCCCCccccCCC--CCcEeecCCCCCCC--C-----
Q 040933 204 ECPQLKLFSVRADHQESSSLTIPN--NFFEKMIQVRVINLTYMNLLPLPSSLGLLS--NLRTLSLCYCKLLD--I----- 272 (298)
Q Consensus 204 ~~~~L~~L~l~~~~~~~~~~~lp~--~~~~~l~~Lr~L~l~~~~i~~lP~~i~~L~--~L~~L~l~~~~l~~--p----- 272 (298)
.+++|++|.+++ +.+..++. ..+..+++|++|+|++|.|..+ ..+..+. +|+.|+|++|++.. |
T Consensus 168 ~l~~L~~L~Ls~----N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y 242 (267)
T 3rw6_A 168 NIPELLSLNLSN----NRLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGNSLCDTFRDQSTY 242 (267)
T ss_dssp HCTTCCEEECTT----SCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHH
T ss_pred hCCCCCEEECCC----CCCCCCccchhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEEccCCcCccccCcchhH
Confidence 355666666666 33333321 2235666777777777766665 2344444 66677777766553 2
Q ss_pred --cccCCCCCCCEEe
Q 040933 273 --SVTGELKKLEILC 285 (298)
Q Consensus 273 --~~i~~L~~L~~L~ 285 (298)
..+..+++|+.||
T Consensus 243 ~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 243 ISAIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHHHCTTCCEES
T ss_pred HHHHHHHCcccCeEC
Confidence 1255666666665
No 145
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.83 E-value=2.6e-06 Score=75.33 Aligned_cols=106 Identities=16% Similarity=0.101 Sum_probs=76.2
Q ss_pred cCccEEEEeCCCCccCCCCcC-----CCCCCCcEEecccccccccccc-----cChHHHhCCCCccEEEecCCCCCC---
Q 040933 182 KLYTSIVLRDIKTNVLPDRVL-----PECPQLKLFSVRADHQESSSLT-----IPNNFFEKMIQVRVINLTYMNLLP--- 248 (298)
Q Consensus 182 ~~~~~l~l~~~~~~~l~~~~~-----~~~~~L~~L~l~~~~~~~~~~~-----lp~~~~~~l~~Lr~L~l~~~~i~~--- 248 (298)
.+++.|.+.+|.+.......+ ...++|++|.+++ +.+.. ++.. +...++|++|+|++|.+..
T Consensus 126 ~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~----n~l~~~~~~~l~~~-L~~~~~L~~L~Ls~N~l~~~g~ 200 (372)
T 3un9_A 126 LRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSN----NPLTAAGVAVLMEG-LAGNTSVTHLSLLHTGLGDEGL 200 (372)
T ss_dssp HTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCS----SCCHHHHHHHHHHH-HHTCSSCCEEECTTSSCHHHHH
T ss_pred HhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCC----CCCChHHHHHHHHH-HhcCCCcCEEeCCCCCCCcHHH
Confidence 468889999888753221111 2457899999988 33432 3332 3678899999999998864
Q ss_pred --CCccccCCCCCcEeecCCCCCCC--C----cccCCCCCCCEEeecCCCCC
Q 040933 249 --LPSSLGLLSNLRTLSLCYCKLLD--I----SVTGELKKLEILCLRGSDIQ 292 (298)
Q Consensus 249 --lP~~i~~L~~L~~L~l~~~~l~~--p----~~i~~L~~L~~L~l~~~~l~ 292 (298)
++..+....+|++|++++|.++. . ..+...++|++|++++|.|.
T Consensus 201 ~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 201 ELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp HHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred HHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCC
Confidence 45667777889999999999875 2 34556688999999999775
No 146
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.80 E-value=2e-05 Score=66.20 Aligned_cols=62 Identities=29% Similarity=0.320 Sum_probs=52.9
Q ss_pred hCCCCccEEEecCCCCCCCC---ccccCCCCCcEeecCCCCCCCCcccCCCC--CCCEEeecCCCCC
Q 040933 231 EKMIQVRVINLTYMNLLPLP---SSLGLLSNLRTLSLCYCKLLDISVTGELK--KLEILCLRGSDIQ 292 (298)
Q Consensus 231 ~~l~~Lr~L~l~~~~i~~lP---~~i~~L~~L~~L~l~~~~l~~p~~i~~L~--~L~~L~l~~~~l~ 292 (298)
..+++|+.|+|++|.+..++ ..++.+++|++|+|++|.+.....+..+. +|++|++++|.+.
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l~L~~L~L~~Npl~ 233 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLC 233 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTSCCSEEECTTSTTG
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccCCcceEEccCCcCc
Confidence 67899999999999998854 56778999999999999998854555555 9999999999875
No 147
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=97.77 E-value=4.7e-06 Score=77.97 Aligned_cols=112 Identities=19% Similarity=0.165 Sum_probs=73.6
Q ss_pred ccCccEEEEe----CCCCccCCCC-----cCCCCCCCcEEecccccccccccccChHHHhCCCCccEEEecCCCCCC--C
Q 040933 181 VKLYTSIVLR----DIKTNVLPDR-----VLPECPQLKLFSVRADHQESSSLTIPNNFFEKMIQVRVINLTYMNLLP--L 249 (298)
Q Consensus 181 ~~~~~~l~l~----~~~~~~l~~~-----~~~~~~~L~~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~l~~~~i~~--l 249 (298)
.++++.+.+. .+.+...|.. .+..+++|+.|.+..+. +......+..+...+++|++|++++|+++. +
T Consensus 402 ~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~-~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~ 480 (592)
T 3ogk_B 402 LKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQ-GGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGL 480 (592)
T ss_dssp CCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCG-GGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHH
T ss_pred CCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCC-CCccHHHHHHHHHhCccceEeeccCCCCCHHHH
Confidence 3456666664 3344432211 12447788888875411 111222233344568899999999998875 5
Q ss_pred CccccCCCCCcEeecCCCCCCC---CcccCCCCCCCEEeecCCCCCC
Q 040933 250 PSSLGLLSNLRTLSLCYCKLLD---ISVTGELKKLEILCLRGSDIQQ 293 (298)
Q Consensus 250 P~~i~~L~~L~~L~l~~~~l~~---p~~i~~L~~L~~L~l~~~~l~~ 293 (298)
|..+..+++|++|++++|.++. +..+..+++|++|++++|++..
T Consensus 481 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~ 527 (592)
T 3ogk_B 481 MEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASM 527 (592)
T ss_dssp HHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCT
T ss_pred HHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCH
Confidence 6667888999999999999765 3445678999999999998653
No 148
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.64 E-value=3.2e-06 Score=74.83 Aligned_cols=107 Identities=15% Similarity=0.083 Sum_probs=78.0
Q ss_pred cCccEEEEeCCCCccCCC-CcCCCCCCCcEEecccccccccccccChHHH-----hCCCCccEEEecCCCCCC-----CC
Q 040933 182 KLYTSIVLRDIKTNVLPD-RVLPECPQLKLFSVRADHQESSSLTIPNNFF-----EKMIQVRVINLTYMNLLP-----LP 250 (298)
Q Consensus 182 ~~~~~l~l~~~~~~~l~~-~~~~~~~~L~~L~l~~~~~~~~~~~lp~~~~-----~~l~~Lr~L~l~~~~i~~-----lP 250 (298)
..++.+.+.+|.+..... .+...+++|+.|++++ +.+.......+ ...++|+.|+|++|.++. ++
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~----n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~ 176 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQL----NSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLM 176 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCS----SCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHH
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCC----CCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHH
Confidence 578899999988753211 1123456899999998 34433222222 346889999999999865 55
Q ss_pred ccccCCCCCcEeecCCCCCCC------CcccCCCCCCCEEeecCCCCC
Q 040933 251 SSLGLLSNLRTLSLCYCKLLD------ISVTGELKKLEILCLRGSDIQ 292 (298)
Q Consensus 251 ~~i~~L~~L~~L~l~~~~l~~------p~~i~~L~~L~~L~l~~~~l~ 292 (298)
..+...++|++|+|++|.+.. +..+...++|++|++++|+|.
T Consensus 177 ~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~ 224 (372)
T 3un9_A 177 EGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAG 224 (372)
T ss_dssp HHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCC
T ss_pred HHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCC
Confidence 566788999999999999875 345677889999999999876
No 149
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=97.56 E-value=0.00025 Score=63.23 Aligned_cols=111 Identities=14% Similarity=0.128 Sum_probs=80.0
Q ss_pred cCccEEEEeCCCCccCCCCcCCCCCCCcEEecccccc-cccccccChHHHhCCCCccEEEecCCCCCCCC-ccccCCCCC
Q 040933 182 KLYTSIVLRDIKTNVLPDRVLPECPQLKLFSVRADHQ-ESSSLTIPNNFFEKMIQVRVINLTYMNLLPLP-SSLGLLSNL 259 (298)
Q Consensus 182 ~~~~~l~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~-~~~~~~lp~~~~~~l~~Lr~L~l~~~~i~~lP-~~i~~L~~L 259 (298)
..++.+.+. +.+..++..+|..+++|+.+.+.+... ......++...|..+.+|+.+++.. +++.++ ..+..+.+|
T Consensus 248 ~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L 325 (401)
T 4fdw_A 248 SGITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKV 325 (401)
T ss_dssp CCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSC
T ss_pred CCccEEEeC-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCc
Confidence 356777773 457778888888899999998876210 1122357888888899999998884 476664 567778889
Q ss_pred cEeecCCCCCCC--CcccCCCCCCCEEeecCCCCCCCCC
Q 040933 260 RTLSLCYCKLLD--ISVTGELKKLEILCLRGSDIQQLPV 296 (298)
Q Consensus 260 ~~L~l~~~~l~~--p~~i~~L~~L~~L~l~~~~l~~lP~ 296 (298)
+.+.+..+ ++. ...|..+ +|+.+++.++.+..++.
T Consensus 326 ~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~ 362 (401)
T 4fdw_A 326 TQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFE 362 (401)
T ss_dssp CEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCC
T ss_pred cEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCccccc
Confidence 99988554 655 5677777 89999998887666553
No 150
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=97.35 E-value=6.5e-05 Score=70.12 Aligned_cols=85 Identities=13% Similarity=0.229 Sum_probs=55.9
Q ss_pred CCCCCCcEEecccccccccccccChHHHhCCCCccEEEecCCCCCCC-Cccc-cCCCCCcEeecCCCCCCC--C-cccCC
Q 040933 203 PECPQLKLFSVRADHQESSSLTIPNNFFEKMIQVRVINLTYMNLLPL-PSSL-GLLSNLRTLSLCYCKLLD--I-SVTGE 277 (298)
Q Consensus 203 ~~~~~L~~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~l~~~~i~~l-P~~i-~~L~~L~~L~l~~~~l~~--p-~~i~~ 277 (298)
..+++|+.|.+.+ ......+..+...+++|++|++++|.++.. +..+ ..+++|++|++++|.++. + ..+..
T Consensus 429 ~~~~~L~~L~L~~----~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~ 504 (594)
T 2p1m_B 429 EHCKDLRRLSLSG----LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASK 504 (594)
T ss_dssp HHCTTCCEEECCS----SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGG
T ss_pred hhCCCccEEeecC----cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHh
Confidence 3456777777744 111122223323478888999988887542 2233 568889999999999855 3 34556
Q ss_pred CCCCCEEeecCCCC
Q 040933 278 LKKLEILCLRGSDI 291 (298)
Q Consensus 278 L~~L~~L~l~~~~l 291 (298)
+++|++|++++|++
T Consensus 505 l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 505 LETMRSLWMSSCSV 518 (594)
T ss_dssp GGGSSEEEEESSCC
T ss_pred CCCCCEEeeeCCCC
Confidence 88999999999865
No 151
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=97.27 E-value=9.3e-05 Score=69.09 Aligned_cols=57 Identities=11% Similarity=0.109 Sum_probs=30.2
Q ss_pred ccCccEEEEeCCCCccCCCC----cCCCCCCCcEEecccccccccccccChHHHhCCCCccEEEec
Q 040933 181 VKLYTSIVLRDIKTNVLPDR----VLPECPQLKLFSVRADHQESSSLTIPNNFFEKMIQVRVINLT 242 (298)
Q Consensus 181 ~~~~~~l~l~~~~~~~l~~~----~~~~~~~L~~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~l~ 242 (298)
...++.|.+..+.+..+... ++..+++|++|.+.+ +....+|. .+..+++|+.|+++
T Consensus 191 ~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~----~~~~~l~~-~~~~~~~L~~L~l~ 251 (592)
T 3ogk_B 191 NTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGD----FEILELVG-FFKAAANLEEFCGG 251 (592)
T ss_dssp CCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSS----CBGGGGHH-HHHHCTTCCEEEEC
T ss_pred CCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccC----ccHHHHHH-HHhhhhHHHhhccc
Confidence 35677777776666522211 123466777777766 23333443 23555555555555
No 152
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.17 E-value=0.00026 Score=55.30 Aligned_cols=86 Identities=9% Similarity=-0.046 Sum_probs=62.8
Q ss_pred cCccEEEEeCCCCccCCCCcCCCCCCCcEEecccccccccccccChHHHhCC----CCccEEEecCC-CCCC--CCcccc
Q 040933 182 KLYTSIVLRDIKTNVLPDRVLPECPQLKLFSVRADHQESSSLTIPNNFFEKM----IQVRVINLTYM-NLLP--LPSSLG 254 (298)
Q Consensus 182 ~~~~~l~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~lp~~~~~~l----~~Lr~L~l~~~-~i~~--lP~~i~ 254 (298)
-.++.+.++++.+....-..+..+++|+.|.+.+ +..++.-.-..+..+ ++|++|++++| +|+. + ..+.
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~---C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl-~~L~ 136 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCK---CHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGI-IALH 136 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEES---CTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHH-HHGG
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCC---CCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHH-HHHh
Confidence 4689999999887543222347899999999998 554443222223443 47999999999 5876 3 3577
Q ss_pred CCCCCcEeecCCCC-CCC
Q 040933 255 LLSNLRTLSLCYCK-LLD 271 (298)
Q Consensus 255 ~L~~L~~L~l~~~~-l~~ 271 (298)
.+++|++|++++|+ ++.
T Consensus 137 ~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 137 HFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp GCTTCCEEEEESCTTCCC
T ss_pred cCCCCCEEECCCCCCCCc
Confidence 89999999999998 765
No 153
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.17 E-value=0.00015 Score=57.28 Aligned_cols=105 Identities=14% Similarity=0.072 Sum_probs=75.7
Q ss_pred ccCccEEEEeCC-CCcc-----CCCCcCCCCCCCcEEecccccccccccc-----cChHHHhCCCCccEEEecCCCCCC-
Q 040933 181 VKLYTSIVLRDI-KTNV-----LPDRVLPECPQLKLFSVRADHQESSSLT-----IPNNFFEKMIQVRVINLTYMNLLP- 248 (298)
Q Consensus 181 ~~~~~~l~l~~~-~~~~-----l~~~~~~~~~~L~~L~l~~~~~~~~~~~-----lp~~~~~~l~~Lr~L~l~~~~i~~- 248 (298)
...++.|.+.+| .+.. +.. .+...++|++|.+++ +.+.. +... +...+.|++|+|++|.|..
T Consensus 35 ~~~L~~L~L~~n~~i~~~g~~~l~~-~L~~~~~L~~L~Ls~----n~i~~~g~~~l~~~-L~~n~~L~~L~L~~N~i~~~ 108 (185)
T 1io0_A 35 DPDLEEVNLNNIMNIPVPTLKACAE-ALKTNTYVKKFSIVG----TRSNDPVAFALAEM-LKVNNTLKSLNVESNFISGS 108 (185)
T ss_dssp CTTCCEEECTTCTTCCHHHHHHHHH-HHTTCCSCCEEECTT----SCCCHHHHHHHHHH-HHHCSSCCEEECCSSCCCHH
T ss_pred CCCCCEEEecCCCCCCHHHHHHHHH-HHHhCCCcCEEECcC----CCCChHHHHHHHHH-HHhCCCcCEEECcCCcCCHH
Confidence 467899999988 7742 222 135568899999988 33322 2222 3667889999999999875
Q ss_pred ----CCccccCCCCCcEeec--CCCCCCC--C----cccCCCCCCCEEeecCCCC
Q 040933 249 ----LPSSLGLLSNLRTLSL--CYCKLLD--I----SVTGELKKLEILCLRGSDI 291 (298)
Q Consensus 249 ----lP~~i~~L~~L~~L~l--~~~~l~~--p----~~i~~L~~L~~L~l~~~~l 291 (298)
+...+....+|++|++ ++|.+.. . ..+...++|++|++++|.+
T Consensus 109 g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 109 GILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp HHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred HHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence 5667777888999999 7888876 2 3445558899999998865
No 154
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=97.15 E-value=5.2e-05 Score=70.81 Aligned_cols=105 Identities=10% Similarity=0.036 Sum_probs=58.3
Q ss_pred cCccEEEEeCCCCccCCCCcC-CCCCCCcEEecccccccccccc-cChHHHhCCCCccEEEecCCCCCC-----CCcccc
Q 040933 182 KLYTSIVLRDIKTNVLPDRVL-PECPQLKLFSVRADHQESSSLT-IPNNFFEKMIQVRVINLTYMNLLP-----LPSSLG 254 (298)
Q Consensus 182 ~~~~~l~l~~~~~~~l~~~~~-~~~~~L~~L~l~~~~~~~~~~~-lp~~~~~~l~~Lr~L~l~~~~i~~-----lP~~i~ 254 (298)
..++.+.+.++.+.......+ ..+++|++|.+.+ +..+.. ....++..+++|++|++++|.++. ++....
T Consensus 105 ~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~---~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~ 181 (594)
T 2p1m_B 105 TWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSS---CEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPD 181 (594)
T ss_dssp TTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEES---CEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCT
T ss_pred CCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCC---cCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhh
Confidence 467777777766543211111 2467777777776 323322 122333567778888877776544 222233
Q ss_pred CCCCCcEeecCCCC--CCC---CcccCCCCCCCEEeecCC
Q 040933 255 LLSNLRTLSLCYCK--LLD---ISVTGELKKLEILCLRGS 289 (298)
Q Consensus 255 ~L~~L~~L~l~~~~--l~~---p~~i~~L~~L~~L~l~~~ 289 (298)
.+++|++|++++|. +.. +.-+.++++|++|++++|
T Consensus 182 ~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~ 221 (594)
T 2p1m_B 182 TYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRA 221 (594)
T ss_dssp TCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTT
T ss_pred cCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCC
Confidence 55677777777775 221 112234577777777766
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.13 E-value=3.4e-05 Score=61.11 Aligned_cols=87 Identities=10% Similarity=0.064 Sum_probs=60.8
Q ss_pred CCCCCCCcEEecccccccccccc-----cChHHHhCCCCccEEEecCCCCCC-----CCccccCCCCCcEeecCCCCCCC
Q 040933 202 LPECPQLKLFSVRADHQESSSLT-----IPNNFFEKMIQVRVINLTYMNLLP-----LPSSLGLLSNLRTLSLCYCKLLD 271 (298)
Q Consensus 202 ~~~~~~L~~L~l~~~~~~~~~~~-----lp~~~~~~l~~Lr~L~l~~~~i~~-----lP~~i~~L~~L~~L~l~~~~l~~ 271 (298)
+...+.|+.|.+.+ +..+.. +... +...++|++|+|++|.+.. +...+....+|++|+|++|.+..
T Consensus 32 l~~~~~L~~L~L~~---n~~i~~~g~~~l~~~-L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~ 107 (185)
T 1io0_A 32 QNNDPDLEEVNLNN---IMNIPVPTLKACAEA-LKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISG 107 (185)
T ss_dssp HTTCTTCCEEECTT---CTTCCHHHHHHHHHH-HTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCH
T ss_pred HhcCCCCCEEEecC---CCCCCHHHHHHHHHH-HHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCH
Confidence 35678888888887 313322 2222 3667889999999998764 34455566788999999988876
Q ss_pred ------CcccCCCCCCCEEee--cCCCCC
Q 040933 272 ------ISVTGELKKLEILCL--RGSDIQ 292 (298)
Q Consensus 272 ------p~~i~~L~~L~~L~l--~~~~l~ 292 (298)
...+...++|++|++ ++|.+.
T Consensus 108 ~g~~~l~~~L~~n~~L~~L~L~~~~N~i~ 136 (185)
T 1io0_A 108 SGILALVEALQSNTSLIELRIDNQSQPLG 136 (185)
T ss_dssp HHHHHHHHGGGGCSSCCEEECCCCSSCCC
T ss_pred HHHHHHHHHHHhCCCceEEEecCCCCCCC
Confidence 245667778999999 667664
No 156
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=96.88 E-value=0.0011 Score=58.25 Aligned_cols=112 Identities=10% Similarity=0.097 Sum_probs=61.2
Q ss_pred ccCccEEEEeCCCCccCCCC--cCCCCCCCcEEeccccc----ccccccccChHHH-hCCCCccEEEecCCCCCC-CCcc
Q 040933 181 VKLYTSIVLRDIKTNVLPDR--VLPECPQLKLFSVRADH----QESSSLTIPNNFF-EKMIQVRVINLTYMNLLP-LPSS 252 (298)
Q Consensus 181 ~~~~~~l~l~~~~~~~l~~~--~~~~~~~L~~L~l~~~~----~~~~~~~lp~~~~-~~l~~Lr~L~l~~~~i~~-lP~~ 252 (298)
..++++|.+..+.+..-.-. ....+++|+.|.+.... +......+...+- ..+++|++|++.+|.+.. .+..
T Consensus 192 ~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~ 271 (362)
T 2ra8_A 192 RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEM 271 (362)
T ss_dssp CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHH
T ss_pred CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHH
Confidence 45677777766554311000 01256777777764210 0011111111110 246788888888877653 1111
Q ss_pred c---cCCCCCcEeecCCCCCCC--C----cccCCCCCCCEEeecCCCCC
Q 040933 253 L---GLLSNLRTLSLCYCKLLD--I----SVTGELKKLEILCLRGSDIQ 292 (298)
Q Consensus 253 i---~~L~~L~~L~l~~~~l~~--p----~~i~~L~~L~~L~l~~~~l~ 292 (298)
+ +.+++|++|+|+.|.+.. + ..+.++++|+.|++++|.+.
T Consensus 272 la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 272 FLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp HHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred HHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence 2 346778888888887765 2 23356688888888877654
No 157
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=96.84 E-value=0.00014 Score=63.91 Aligned_cols=107 Identities=11% Similarity=0.185 Sum_probs=68.2
Q ss_pred hccCccEEEEeCCCCccCCCCcCCCCCCCcEEecccccccccccccChHHH-hCCCCccEEEecCC--C------CCCCC
Q 040933 180 AVKLYTSIVLRDIKTNVLPDRVLPECPQLKLFSVRADHQESSSLTIPNNFF-EKMIQVRVINLTYM--N------LLPLP 250 (298)
Q Consensus 180 ~~~~~~~l~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~lp~~~~-~~l~~Lr~L~l~~~--~------i~~lP 250 (298)
..+.++.|.+.++.-..++. ...++|+.|.+.. +.........+. ..+++|+.|+|+.+ . +..+.
T Consensus 170 ~~P~L~~L~L~g~~~l~l~~---~~~~~L~~L~L~~---~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~ 243 (362)
T 2ra8_A 170 AMPLLNNLKIKGTNNLSIGK---KPRPNLKSLEIIS---GGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFR 243 (362)
T ss_dssp TCTTCCEEEEECCBTCBCCS---CBCTTCSEEEEEC---SBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTG
T ss_pred cCCCCcEEEEeCCCCceecc---ccCCCCcEEEEec---CCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHH
Confidence 34689999998874334444 2378999999876 221111111221 36899999998632 1 22222
Q ss_pred ccc--cCCCCCcEeecCCCCCCC--Cccc---CCCCCCCEEeecCCCCC
Q 040933 251 SSL--GLLSNLRTLSLCYCKLLD--ISVT---GELKKLEILCLRGSDIQ 292 (298)
Q Consensus 251 ~~i--~~L~~L~~L~l~~~~l~~--p~~i---~~L~~L~~L~l~~~~l~ 292 (298)
..+ +.+++|++|++++|.+.. +..+ +.+++|++|+|+.|.+.
T Consensus 244 ~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~ 292 (362)
T 2ra8_A 244 PLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLT 292 (362)
T ss_dssp GGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCB
T ss_pred HHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCC
Confidence 222 357899999999998764 2222 36789999999988765
No 158
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=96.76 E-value=0.0031 Score=56.09 Aligned_cols=98 Identities=11% Similarity=0.139 Sum_probs=59.9
Q ss_pred CccEEEEeCCCCccCCCCcCCCCCCCcEEecccccccccccccChHHHhCCCCccEEEecCCCCCCCCccccCCCCCcEe
Q 040933 183 LYTSIVLRDIKTNVLPDRVLPECPQLKLFSVRADHQESSSLTIPNNFFEKMIQVRVINLTYMNLLPLPSSLGLLSNLRTL 262 (298)
Q Consensus 183 ~~~~l~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~l~~~~i~~lP~~i~~L~~L~~L 262 (298)
+++.+.+..+ +..+....|.++ +|+.+.+.. .+..++...|..+.+|+.++++.++++.+|.......+|+.+
T Consensus 136 ~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-----~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l 208 (401)
T 4fdw_A 136 QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-----TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEV 208 (401)
T ss_dssp CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-----TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEE
T ss_pred CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-----CccEehHHHhhCcccCCeeecCCCcceEechhhEeecccCEE
Confidence 3555554433 555665555553 566666543 455666666777788888888777777766554445667777
Q ss_pred ecCCCCCCC--CcccCCCCCCCEEeecC
Q 040933 263 SLCYCKLLD--ISVTGELKKLEILCLRG 288 (298)
Q Consensus 263 ~l~~~~l~~--p~~i~~L~~L~~L~l~~ 288 (298)
.+..+ +.. ...+..+.+|+.+++..
T Consensus 209 ~lp~~-l~~I~~~aF~~~~~L~~l~l~~ 235 (401)
T 4fdw_A 209 LLPVT-LKEIGSQAFLKTSQLKTIEIPE 235 (401)
T ss_dssp ECCTT-CCEECTTTTTTCTTCCCEECCT
T ss_pred EeCCc-hheehhhHhhCCCCCCEEecCC
Confidence 76633 444 44566666666666654
No 159
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.67 E-value=0.0033 Score=46.53 Aligned_cols=48 Identities=27% Similarity=0.255 Sum_probs=32.5
Q ss_pred cccc--ccChHHHhCCCCccEEEecCCCCCCCCcc-ccCCCCCcEeecCCCCCC
Q 040933 220 SSSL--TIPNNFFEKMIQVRVINLTYMNLLPLPSS-LGLLSNLRTLSLCYCKLL 270 (298)
Q Consensus 220 ~~~~--~lp~~~~~~l~~Lr~L~l~~~~i~~lP~~-i~~L~~L~~L~l~~~~l~ 270 (298)
..+. .+|.. -..+|+.|+|++|+|+.+|.. +..+.+|++|+|++|++.
T Consensus 18 ~~L~~~~vP~~---lp~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 18 RGLTWASLPTA---FPVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp SCCCTTTSCSC---CCTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CCCccccCCCC---CCcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 4444 66653 234578888888888887643 566778888888877643
No 160
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=95.55 E-value=0.038 Score=48.26 Aligned_cols=98 Identities=14% Similarity=0.151 Sum_probs=66.3
Q ss_pred CccEEEEeCCCCccCCCCcCCCCCCCcEEecccccccccccccChHHHhCCCCccEEEecCCCCCCCC-ccccCCCCCcE
Q 040933 183 LYTSIVLRDIKTNVLPDRVLPECPQLKLFSVRADHQESSSLTIPNNFFEKMIQVRVINLTYMNLLPLP-SSLGLLSNLRT 261 (298)
Q Consensus 183 ~~~~l~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~l~~~~i~~lP-~~i~~L~~L~~ 261 (298)
.++.+.+..+ +..+....|..+.+|+.+.+.. .+..++...|..+.+|+.+.+..+.++.++ ..+.++.+|+.
T Consensus 241 ~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~-----~i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~ 314 (379)
T 4h09_A 241 ALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYA-----KVKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSS 314 (379)
T ss_dssp SCCEEEECTT-CCEECTTTTTTCTTCCEEEECC-----CCSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCE
T ss_pred cceEEEcCCC-ccEeCccccceeehhccccccc-----cceeccccccccccccccccccccccceehhhhhcCCCCCCE
Confidence 3444554432 4555555666677777776643 456677777888888988888888887764 45778888888
Q ss_pred eecCCCCCCC--CcccCCCCCCCEEeec
Q 040933 262 LSLCYCKLLD--ISVTGELKKLEILCLR 287 (298)
Q Consensus 262 L~l~~~~l~~--p~~i~~L~~L~~L~l~ 287 (298)
+.+..+ ++. ...|.+..+|+.+.+.
T Consensus 315 i~lp~~-l~~I~~~aF~~C~~L~~i~ip 341 (379)
T 4h09_A 315 VTLPTA-LKTIQVYAFKNCKALSTISYP 341 (379)
T ss_dssp EECCTT-CCEECTTTTTTCTTCCCCCCC
T ss_pred EEcCcc-ccEEHHHHhhCCCCCCEEEEC
Confidence 888643 554 4566677777777653
No 161
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.10 E-value=0.041 Score=40.50 Aligned_cols=55 Identities=9% Similarity=0.057 Sum_probs=42.7
Q ss_pred EEEEeCCCCc--cCCCCcCCCCCCCcEEecccccccccccccChHHHhCCCCccEEEecCCCCC
Q 040933 186 SIVLRDIKTN--VLPDRVLPECPQLKLFSVRADHQESSSLTIPNNFFEKMIQVRVINLTYMNLL 247 (298)
Q Consensus 186 ~l~l~~~~~~--~l~~~~~~~~~~L~~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~l~~~~i~ 247 (298)
.+...++.+. .+|.. -.++|+.|++++ +.+..+|...|..+++|++|+|++|.+.
T Consensus 12 ~v~Cs~~~L~~~~vP~~---lp~~l~~L~Ls~----N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTA---FPVDTTELVLTG----NNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSC---CCTTCSEEECTT----SCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCC---CCcCCCEEECCC----CcCCccChhhhhhccccCEEEecCCCee
Confidence 5566666776 77753 234688999987 7788899988899999999999998764
No 162
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=94.48 E-value=0.099 Score=45.99 Aligned_cols=87 Identities=15% Similarity=0.244 Sum_probs=55.6
Q ss_pred cCCCCcCCCCCCCcEEecccccccccccccChHHHhCCCCccEEEecCCCCCCCC-ccccCCCCCcEeecCCCCCCC--C
Q 040933 196 VLPDRVLPECPQLKLFSVRADHQESSSLTIPNNFFEKMIQVRVINLTYMNLLPLP-SSLGLLSNLRTLSLCYCKLLD--I 272 (298)
Q Consensus 196 ~l~~~~~~~~~~L~~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~l~~~~i~~lP-~~i~~L~~L~~L~l~~~~l~~--p 272 (298)
.+....|..++.|+.+.+. ..+..++...|..+.+|+.+++..+ ++.+. ..+..+.+|+.+.+..+ ++. .
T Consensus 278 ~I~~~aF~~c~~L~~i~l~-----~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~ 350 (394)
T 4gt6_A 278 SIGTGAFMNCPALQDIEFS-----SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPE 350 (394)
T ss_dssp EECTTTTTTCTTCCEEECC-----TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCG
T ss_pred eecCcccccccccccccCC-----CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhH
Confidence 3444445566666666553 2455677777777778888777653 55543 45667777888877543 544 4
Q ss_pred cccCCCCCCCEEeecCC
Q 040933 273 SVTGELKKLEILCLRGS 289 (298)
Q Consensus 273 ~~i~~L~~L~~L~l~~~ 289 (298)
..|.++.+|+.+++.++
T Consensus 351 ~aF~~C~~L~~i~~~~~ 367 (394)
T 4gt6_A 351 SAFSNCTALNNIEYSGS 367 (394)
T ss_dssp GGGTTCTTCCEEEESSC
T ss_pred hHhhCCCCCCEEEECCc
Confidence 56777778888877654
No 163
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=93.67 E-value=0.1 Score=45.90 Aligned_cols=85 Identities=18% Similarity=0.227 Sum_probs=60.0
Q ss_pred CCCcCCCCCCCcEEecccccccccccccChHHHhCCCCccEEEecCCCCCCCC-ccccCCCCCcEeecCCCCCCC--Ccc
Q 040933 198 PDRVLPECPQLKLFSVRADHQESSSLTIPNNFFEKMIQVRVINLTYMNLLPLP-SSLGLLSNLRTLSLCYCKLLD--ISV 274 (298)
Q Consensus 198 ~~~~~~~~~~L~~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~l~~~~i~~lP-~~i~~L~~L~~L~l~~~~l~~--p~~ 274 (298)
+...|..+.+|+.+.+.. .+..+++..|..+.+|+.+++..+ ++.++ ..+.++.+|+.+.+..+ ++. ...
T Consensus 289 ~~~~F~~~~~L~~i~l~~-----~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~a 361 (394)
T 4fs7_A 289 PEKTFYGCSSLTEVKLLD-----SVKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANA 361 (394)
T ss_dssp CTTTTTTCTTCCEEEECT-----TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTT
T ss_pred cccccccccccccccccc-----ccceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHH
Confidence 344456666777766643 356677777888888888888643 66653 45777888888888765 655 567
Q ss_pred cCCCCCCCEEeecCC
Q 040933 275 TGELKKLEILCLRGS 289 (298)
Q Consensus 275 i~~L~~L~~L~l~~~ 289 (298)
+..+.+|+.+++..+
T Consensus 362 F~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 362 FQGCINLKKVELPKR 376 (394)
T ss_dssp BTTCTTCCEEEEEGG
T ss_pred hhCCCCCCEEEECCC
Confidence 888888988888654
No 164
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=93.65 E-value=0.094 Score=46.14 Aligned_cols=99 Identities=16% Similarity=0.211 Sum_probs=69.3
Q ss_pred CccEEEEeCCCCccCCCCcCCCCCCCcEEecccccccccccccChHHHhCCCCccEEEecCCCCCCCC-ccccCCCCCcE
Q 040933 183 LYTSIVLRDIKTNVLPDRVLPECPQLKLFSVRADHQESSSLTIPNNFFEKMIQVRVINLTYMNLLPLP-SSLGLLSNLRT 261 (298)
Q Consensus 183 ~~~~l~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~l~~~~i~~lP-~~i~~L~~L~~ 261 (298)
.++.+.+. +.+..++...|.++.+|+.+.+.. .+..+.+..|..+.+|+.+.+..+ ++.++ ..+.++.+|+.
T Consensus 289 ~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~-----~v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~ 361 (394)
T 4gt6_A 289 ALQDIEFS-SRITELPESVFAGCISLKSIDIPE-----GITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNN 361 (394)
T ss_dssp TCCEEECC-TTCCEECTTTTTTCTTCCEEECCT-----TCCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCE
T ss_pred ccccccCC-CcccccCceeecCCCCcCEEEeCC-----cccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCE
Confidence 34555543 456778888899999999999865 477888888999999999999654 77775 56889999999
Q ss_pred eecCCCCCCCCcccCCCCCCCEEeecCC
Q 040933 262 LSLCYCKLLDISVTGELKKLEILCLRGS 289 (298)
Q Consensus 262 L~l~~~~l~~p~~i~~L~~L~~L~l~~~ 289 (298)
+.+.++... ...+....+|+.+.+..+
T Consensus 362 i~~~~~~~~-~~~~~~~~~L~~i~i~~~ 388 (394)
T 4gt6_A 362 IEYSGSRSQ-WNAISTDSGLQNLPVAPG 388 (394)
T ss_dssp EEESSCHHH-HHTCBCCCCC--------
T ss_pred EEECCceee-hhhhhccCCCCEEEeCCC
Confidence 999886421 234556677888877655
No 165
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=92.22 E-value=0.14 Score=45.01 Aligned_cols=94 Identities=16% Similarity=0.145 Sum_probs=69.3
Q ss_pred cCccEEEEeCCCCccCCCCcCCCCCCCcEEecccccccccccccChHHHhCCCCccEEEecCCCCCCCC-ccccCCCCCc
Q 040933 182 KLYTSIVLRDIKTNVLPDRVLPECPQLKLFSVRADHQESSSLTIPNNFFEKMIQVRVINLTYMNLLPLP-SSLGLLSNLR 260 (298)
Q Consensus 182 ~~~~~l~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~l~~~~i~~lP-~~i~~L~~L~ 260 (298)
..++.+.+.. .+..+....|..+.+|+++.+.. .+..++...|..+.+|+.+.+..+ ++.++ ..+..+.+|+
T Consensus 297 ~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~-----~v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~ 369 (394)
T 4fs7_A 297 SSLTEVKLLD-SVKFIGEEAFESCTSLVSIDLPY-----LVEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLK 369 (394)
T ss_dssp TTCCEEEECT-TCCEECTTTTTTCTTCCEECCCT-----TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCC
T ss_pred cccccccccc-ccceechhhhcCCCCCCEEEeCC-----cccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCC
Confidence 3566666654 47778888889999999998854 477888888999999999999766 66664 5688899999
Q ss_pred EeecCCCCCCC-CcccCCCCCCCE
Q 040933 261 TLSLCYCKLLD-ISVTGELKKLEI 283 (298)
Q Consensus 261 ~L~l~~~~l~~-p~~i~~L~~L~~ 283 (298)
.+.+..+ ++. ...+.+..+|+.
T Consensus 370 ~i~lp~~-~~~~~~~F~~c~~L~~ 392 (394)
T 4fs7_A 370 KVELPKR-LEQYRYDFEDTTKFKW 392 (394)
T ss_dssp EEEEEGG-GGGGGGGBCTTCEEEE
T ss_pred EEEECCC-CEEhhheecCCCCCcE
Confidence 9988653 332 344555555554
No 166
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=91.75 E-value=0.58 Score=40.62 Aligned_cols=89 Identities=15% Similarity=0.119 Sum_probs=67.1
Q ss_pred CccCCCCcCCCCCCCcEEecccccccccccccChHHHhCCCCccEEEecCCCCCCCC-ccccCCCCCcEeecCCCCCCC-
Q 040933 194 TNVLPDRVLPECPQLKLFSVRADHQESSSLTIPNNFFEKMIQVRVINLTYMNLLPLP-SSLGLLSNLRTLSLCYCKLLD- 271 (298)
Q Consensus 194 ~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~l~~~~i~~lP-~~i~~L~~L~~L~l~~~~l~~- 271 (298)
+..+....+..+..|+.+.+.. .+..+....|..+..|+.+.+..+ +..++ ..+..+.+|+.+.+.++.++.
T Consensus 228 ~~~i~~~~f~~~~~L~~i~lp~-----~v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I 301 (379)
T 4h09_A 228 VTTLGDGAFYGMKALDEIAIPK-----NVTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETL 301 (379)
T ss_dssp CCEECTTTTTTCSSCCEEEECT-----TCCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEE
T ss_pred eeEEccccccCCccceEEEcCC-----CccEeCccccceeehhcccccccc-ceecccccccccccccccccccccccee
Confidence 4455555667778888887754 366777777888899999988654 55554 457788999999999888877
Q ss_pred -CcccCCCCCCCEEeecC
Q 040933 272 -ISVTGELKKLEILCLRG 288 (298)
Q Consensus 272 -p~~i~~L~~L~~L~l~~ 288 (298)
...+.++.+|+.+.+..
T Consensus 302 ~~~aF~~c~~L~~i~lp~ 319 (379)
T 4h09_A 302 EPRVFMDCVKLSSVTLPT 319 (379)
T ss_dssp CTTTTTTCTTCCEEECCT
T ss_pred hhhhhcCCCCCCEEEcCc
Confidence 56788889999998753
No 167
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=86.79 E-value=0.22 Score=39.34 Aligned_cols=102 Identities=13% Similarity=0.104 Sum_probs=54.0
Q ss_pred cCccEEEEeCC-CCcc-----CCCCcCCCCCCCcEEecccccccccccc-----cChHHHhCCCCccEEEecCCCCCC--
Q 040933 182 KLYTSIVLRDI-KTNV-----LPDRVLPECPQLKLFSVRADHQESSSLT-----IPNNFFEKMIQVRVINLTYMNLLP-- 248 (298)
Q Consensus 182 ~~~~~l~l~~~-~~~~-----l~~~~~~~~~~L~~L~l~~~~~~~~~~~-----lp~~~~~~l~~Lr~L~l~~~~i~~-- 248 (298)
..++.|.+.++ .+.. +-. .+..-..|+.|.+.+ +.+.. +.. .+..-+.|+.|+|+.|.|..
T Consensus 41 ~~L~~L~L~~nn~igd~ga~~la~-aL~~N~~L~~L~L~~----n~igd~ga~alA~-aL~~N~tL~~L~L~~N~Ig~~G 114 (197)
T 1pgv_A 41 TDLKEVNINNMKRVSKERIRSLIE-AACNSKHIEKFSLAN----TAISDSEARGLIE-LIETSPSLRVLNVESNFLTPEL 114 (197)
T ss_dssp SSCCEEECTTCCSSCHHHHHHHHH-HHTTCSCCCEEECTT----SCCBHHHHTTHHH-HHHHCSSCCEEECCSSBCCHHH
T ss_pred CCccEEECCCCCCCCHHHHHHHHH-HHhhCCCcCEEEccC----CCCChHHHHHHHH-HHhcCCccCeEecCCCcCCHHH
Confidence 45777777664 4431 111 123345677777776 22221 222 23455677888888877753
Q ss_pred ---CCccccCCCCCcEeecCCCCC---CC--C----cccCCCCCCCEEeecCC
Q 040933 249 ---LPSSLGLLSNLRTLSLCYCKL---LD--I----SVTGELKKLEILCLRGS 289 (298)
Q Consensus 249 ---lP~~i~~L~~L~~L~l~~~~l---~~--p----~~i~~L~~L~~L~l~~~ 289 (298)
+-+.+..=..|+.|+|+++.. .. - ..+..-+.|..|+++.+
T Consensus 115 a~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~ 167 (197)
T 1pgv_A 115 LARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA 167 (197)
T ss_dssp HHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred HHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCC
Confidence 223333344577777775532 21 1 22333456777777654
No 168
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=81.70 E-value=0.64 Score=36.67 Aligned_cols=83 Identities=11% Similarity=0.022 Sum_probs=59.3
Q ss_pred CCCCCCcEEecccccccccccc-----cChHHHhCCCCccEEEecCCCCCC-----CCccccCCCCCcEeecCCCCCCC-
Q 040933 203 PECPQLKLFSVRADHQESSSLT-----IPNNFFEKMIQVRVINLTYMNLLP-----LPSSLGLLSNLRTLSLCYCKLLD- 271 (298)
Q Consensus 203 ~~~~~L~~L~l~~~~~~~~~~~-----lp~~~~~~l~~Lr~L~l~~~~i~~-----lP~~i~~L~~L~~L~l~~~~l~~- 271 (298)
..-+.|+.|.+.+ ++.+.. +... +..-..|+.|+|++|.|.. +-..+..=..|+.|+|++|.|..
T Consensus 38 ~~n~~L~~L~L~~---nn~igd~ga~~la~a-L~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~ 113 (197)
T 1pgv_A 38 EDDTDLKEVNINN---MKRVSKERIRSLIEA-ACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPE 113 (197)
T ss_dssp TTCSSCCEEECTT---CCSSCHHHHHHHHHH-HTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHH
T ss_pred hcCCCccEEECCC---CCCCCHHHHHHHHHH-HhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHH
Confidence 5567899999876 223321 2222 3667889999999999864 34445455679999999999886
Q ss_pred -C----cccCCCCCCCEEeecCC
Q 040933 272 -I----SVTGELKKLEILCLRGS 289 (298)
Q Consensus 272 -p----~~i~~L~~L~~L~l~~~ 289 (298)
- ..+..-..|+.|+|++|
T Consensus 114 Ga~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 114 LLARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp HHHHHHHHTTTTCCCSEEECCCC
T ss_pred HHHHHHHHHhhCCceeEEECCCC
Confidence 2 34556678999999865
No 169
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=81.26 E-value=5.4 Score=33.63 Aligned_cols=115 Identities=12% Similarity=0.085 Sum_probs=60.9
Q ss_pred HHHHHHHHHcCCchhHHHHHHHHhcC-CCHHHHH-HHHHHhcCCCCCCCCCchhhhh-hHHhhhhcCCCCchhHHHHHHh
Q 040933 13 CVARDVAKECVGLPVSIVAVARALRS-ASIFKWK-DALKQLRRPSSTNFKHIQPEAY-KATALSYDKLEGEELKNLFLLI 89 (298)
Q Consensus 13 ~i~~~i~~~c~GlPLal~~~g~~L~~-k~~~~W~-~~~~~l~~~~~~~~~~~~~~~~-~~l~~sY~~L~~~~lk~cfl~~ 89 (298)
+...++++.|+|.|+++..++..+.. .+...+- ...+.. ...+. .+-.+.+ . ++. .+..+..+
T Consensus 226 ~~~~~i~~~tgG~P~~l~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~l~~l~~-~-~~~-~~~~l~~l 291 (350)
T 2qen_A 226 NEIEEAVELLDGIPGWLVVFGVEYLRNGDFGRAMKRTLEVA-----------KGLIMGELEELRR-R-SPR-YVDILRAI 291 (350)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCHHHHHHHHHHHH-----------HHHHHHHHHHHHH-H-CHH-HHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHhccccHhHHHHHHHHHH-----------HHHHHHHHHHHHh-C-Chh-HHHHHHHH
Confidence 46678999999999999999876532 2322221 111110 00011 1111222 2 555 68888888
Q ss_pred cC-CCCCCHHHHHHHHhhcCCCCCcccHHHHHHHHHHHHHHHHhcCCcccCC--ccc-hHHHHHH
Q 040933 90 GY-AYVESIDELLRYGVGLGLFQGISKLDEARDRVSTLVYKLKASCMLLDEG--LPM-HDVIRDV 150 (298)
Q Consensus 90 a~-p~~~~~~~li~~wia~g~i~~~~~~~~~~~~~~~~i~~L~~~~l~~~~~--~~m-hdlv~~l 150 (298)
|. + .+...+.....+.. - + .+..+ ...+++.|.+.+++...+ |++ |.++++.
T Consensus 292 a~g~--~~~~~l~~~~~~~~-~-~-~~~~~----~~~~l~~L~~~gli~~~~~~y~~~~p~~~~~ 347 (350)
T 2qen_A 292 ALGY--NRWSLIRDYLAVKG-T-K-IPEPR----LYALLENLKKMNWIVEEDNTYKIADPVVATV 347 (350)
T ss_dssp HTTC--CSHHHHHHHHHHTT-C-C-CCHHH----HHHHHHHHHHTTSEEEETTEEEESSHHHHHH
T ss_pred HhCC--CCHHHHHHHHHHHh-C-C-CCHHH----HHHHHHHHHhCCCEEecCCEEEEecHHHHHH
Confidence 87 4 34455544432211 0 1 11222 334577788899997533 555 4455543
No 170
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=76.02 E-value=12 Score=31.40 Aligned_cols=113 Identities=12% Similarity=0.035 Sum_probs=61.5
Q ss_pred HHHHHHcCCchhHHHHHHHHhcC-CCHHHHHH-HHHHhcCCCCCCCCCchhhhhhHHh-hhhc--CCCCchhHHHHHHhc
Q 040933 16 RDVAKECVGLPVSIVAVARALRS-ASIFKWKD-ALKQLRRPSSTNFKHIQPEAYKATA-LSYD--KLEGEELKNLFLLIG 90 (298)
Q Consensus 16 ~~i~~~c~GlPLal~~~g~~L~~-k~~~~W~~-~~~~l~~~~~~~~~~~~~~~~~~l~-~sY~--~L~~~~lk~cfl~~a 90 (298)
.+|++.|+|.|+++..++..+.. .+...|-. +.+.. ...+...+. ..++ .|++. .+..+..+|
T Consensus 233 ~~i~~~t~G~P~~l~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~l~~~~~~~~~l~~~-~~~~l~~la 300 (357)
T 2fna_A 233 EVVYEKIGGIPGWLTYFGFIYLDNKNLDFAINQTLEYA-----------KKLILKEFENFLHGREIARKR-YLNIMRTLS 300 (357)
T ss_dssp HHHHHHHCSCHHHHHHHHHHHHHHCCHHHHHHHHHHHH-----------HHHHHHHHHHHHTTCGGGHHH-HHHHHHHHT
T ss_pred HHHHHHhCCCHHHHHHHHHHHccccchHHHHHHHHHHH-----------HHHHHHHHHHHhhccccccHH-HHHHHHHHH
Confidence 78999999999999999987653 23333321 11110 011111111 1221 57777 688888888
Q ss_pred C-CCCCCHHHHHHHHh-hcCCCCCcccHHHHHHHHHHHHHHHHhcCCcccCC--ccc-hHHHHHH
Q 040933 91 Y-AYVESIDELLRYGV-GLGLFQGISKLDEARDRVSTLVYKLKASCMLLDEG--LPM-HDVIRDV 150 (298)
Q Consensus 91 ~-p~~~~~~~li~~wi-a~g~i~~~~~~~~~~~~~~~~i~~L~~~~l~~~~~--~~m-hdlv~~l 150 (298)
+ + +...+..... ..|. ..+..+ ...+++.|.+.+++...+ |++ |+++++.
T Consensus 301 ~g~---~~~~l~~~~~~~~g~---~~~~~~----~~~~L~~L~~~gli~~~~~~y~f~~~~~~~~ 355 (357)
T 2fna_A 301 KCG---KWSDVKRALELEEGI---EISDSE----IYNYLTQLTKHSWIIKEGEKYCPSEPLISLA 355 (357)
T ss_dssp TCB---CHHHHHHHHHHHHCS---CCCHHH----HHHHHHHHHHTTSEEESSSCEEESSHHHHHH
T ss_pred cCC---CHHHHHHHHHHhcCC---CCCHHH----HHHHHHHHHhCCCEEecCCEEEecCHHHHHh
Confidence 7 4 4444443221 1231 001122 344577788899997643 664 5666653
No 171
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=61.20 E-value=11 Score=25.83 Aligned_cols=47 Identities=9% Similarity=0.070 Sum_probs=34.7
Q ss_pred CCccCCCCcCCCCCCCcEEecccccccccccccChHHHhCCCCccEEEecCC
Q 040933 193 KTNVLPDRVLPECPQLKLFSVRADHQESSSLTIPNNFFEKMIQVRVINLTYM 244 (298)
Q Consensus 193 ~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~l~~~ 244 (298)
.+..+....|.++.+|+.+.+-. .+..+....|..+.+|+.+.+...
T Consensus 7 ~vt~I~~~aF~~c~~L~~i~iP~-----~v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 7 PVVGMDKSLFAGNTVIREITVQP-----NIGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCCSSCSCTTTTCTTCCCEEECT-----TSSCCCTTSSTTCTTCCCEEECCS
T ss_pred ccCEecHHHhcCCCCCcEEEcCC-----chheEcHHHHhccCCccEEEEcCC
Confidence 45667777778888888887754 566677777788888888887765
No 172
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=44.49 E-value=14 Score=30.72 Aligned_cols=24 Identities=13% Similarity=0.099 Sum_probs=16.8
Q ss_pred HHHHHHHHHcCCchhHHHHHHHHh
Q 040933 13 CVARDVAKECVGLPVSIVAVARAL 36 (298)
Q Consensus 13 ~i~~~i~~~c~GlPLal~~~g~~L 36 (298)
+....++++|.|.|-.+..+...+
T Consensus 191 ~~~~~l~~~~~G~~r~l~~~l~~~ 214 (324)
T 1hqc_A 191 EAALEIGRRSRGTMRVAKRLFRRV 214 (324)
T ss_dssp HHHHHHHHHSCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHccCCHHHHHHHHHHH
Confidence 455677888888887776665544
No 173
>2kz2_A Calmodulin, CAM; TR2C, metal binding protein; NMR {Gallus gallus}
Probab=43.54 E-value=66 Score=20.98 Aligned_cols=80 Identities=11% Similarity=0.068 Sum_probs=45.1
Q ss_pred CCchhHHHHHHHHhcCC-CHHHHHHHHHHhcCCCCCCCCCchhhhhhHHhhhhcCCCCchhHHHHHHhcC-C-CCCCHHH
Q 040933 23 VGLPVSIVAVARALRSA-SIFKWKDALKQLRRPSSTNFKHIQPEAYKATALSYDKLEGEELKNLFLLIGY-A-YVESIDE 99 (298)
Q Consensus 23 ~GlPLal~~~g~~L~~k-~~~~W~~~~~~l~~~~~~~~~~~~~~~~~~l~~sY~~L~~~~lk~cfl~~a~-p-~~~~~~~ 99 (298)
.+.|--+.+++..+... ..++++.+...+.......+ ...++..+++..-..++..+++..|-.+-. . ..++.++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~l~~~F~~~D~d~~G~I--~~~El~~~l~~~g~~~~~~e~~~l~~~~D~d~dG~I~~~E 86 (94)
T 2kz2_A 9 HGSSGENLYFQSLMKDTDSEEEIREAFRVEDKDGNGYI--SAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEE 86 (94)
T ss_dssp CCSSCCTHHHHHHHCCCSCHHHHHHHHHHHCTTCCSCB--CHHHHHHHHHHHTCCCCHHHHHHHHHHHCTTCSSSBCHHH
T ss_pred cCcccHHHHHHHHhcCCCHHHHHHHHHHHHCCCCcCcC--CHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcEeHHH
Confidence 34444455667777654 77888888888776655444 345556665544444544445555554433 2 4455555
Q ss_pred HHHHH
Q 040933 100 LLRYG 104 (298)
Q Consensus 100 li~~w 104 (298)
.+.++
T Consensus 87 F~~~~ 91 (94)
T 2kz2_A 87 FVQMM 91 (94)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44433
No 174
>2vda_B Maltoporin; sugar transport, protein transport, protein targeting, transmembrane, outer membrane, signal peptide; NMR {Escherichia coli}
Probab=40.69 E-value=15 Score=17.95 Aligned_cols=18 Identities=17% Similarity=0.353 Sum_probs=14.4
Q ss_pred HcCCchhHHHHHHHHhcC
Q 040933 21 ECVGLPVSIVAVARALRS 38 (298)
Q Consensus 21 ~c~GlPLal~~~g~~L~~ 38 (298)
+-.-+|||..+.++.++.
T Consensus 7 krrklplavav~agv~~a 24 (28)
T 2vda_B 7 KRRKLPLAVAVAAGVMSA 24 (28)
T ss_dssp CCCCCTHHHHHHHHTTCC
T ss_pred ccccCchHHHHHHHHhHh
Confidence 445799999999998764
No 175
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=29.29 E-value=14 Score=27.77 Aligned_cols=81 Identities=15% Similarity=0.153 Sum_probs=48.8
Q ss_pred hcCCCHHHHHHHHHHhcCCCCCCCCCchhhhhhHHhhhhcCCCCchhHHHHHHhcCCCCCCHHHHHHHHhhcCCCCCccc
Q 040933 36 LRSASIFKWKDALKQLRRPSSTNFKHIQPEAYKATALSYDKLEGEELKNLFLLIGYAYVESIDELLRYGVGLGLFQGISK 115 (298)
Q Consensus 36 L~~k~~~~W~~~~~~l~~~~~~~~~~~~~~~~~~l~~sY~~L~~~~lk~cfl~~a~p~~~~~~~li~~wia~g~i~~~~~ 115 (298)
+..++.+.|-..+..++...........+.+.++..-....+|+. .....++.|.+|+-.-......+
T Consensus 8 ~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~------------k~~~wrrYI~LWIrYA~~~ei~D 75 (161)
T 4h7y_A 8 MMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPD------------KYGQNESFARIQVRFAELKAIQE 75 (161)
T ss_dssp --CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGG------------GGTTCHHHHHHHHHHHHHHHHHC
T ss_pred eCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCcc------------ccccHHHHHHHHHHHHHHHHhcC
Confidence 345699999998888775532211011244555555566666665 23456888999987666544445
Q ss_pred HHHHHHHHHHHHH
Q 040933 116 LDEARDRVSTLVY 128 (298)
Q Consensus 116 ~~~~~~~~~~~i~ 128 (298)
.+++.+.+...+.
T Consensus 76 ~d~aR~vy~~a~~ 88 (161)
T 4h7y_A 76 PDDARDYFQMARA 88 (161)
T ss_dssp GGGCHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5566666666655
Done!