Your job contains 1 sequence.
>040934
MKKEDTVKLISAEGFEFVISKEAAMVSQTIRNMLTSPGGFAETEHGEVTFPEISTTILEK
ICQYFYWSLQYS
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 040934
(72 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2168454 - symbol:AT5G59140 species:3702 "Arabi... 298 1.9e-26 1
FB|FBgn0023211 - symbol:Elongin-C "Elongin C" species:722... 178 1.0e-13 1
UNIPROTKB|Q5ZJT7 - symbol:TCEB1 "Uncharacterized protein"... 174 2.7e-13 1
UNIPROTKB|Q2KII4 - symbol:TCEB1 "Transcription elongation... 174 2.7e-13 1
UNIPROTKB|E2R129 - symbol:TCEB1 "Uncharacterized protein"... 174 2.7e-13 1
UNIPROTKB|J9P2H3 - symbol:TCEB1 "Uncharacterized protein"... 174 2.7e-13 1
UNIPROTKB|E5RHG8 - symbol:TCEB1 "Transcription elongation... 174 2.7e-13 1
UNIPROTKB|Q15369 - symbol:TCEB1 "Transcription elongation... 174 2.7e-13 1
UNIPROTKB|F2Z545 - symbol:TCEB1 "Uncharacterized protein"... 174 2.7e-13 1
MGI|MGI:1915173 - symbol:Tceb1 "transcription elongation ... 174 2.7e-13 1
RGD|620658 - symbol:Tceb1 "transcription elongation facto... 174 2.7e-13 1
ZFIN|ZDB-GENE-040912-120 - symbol:tceb1a "transcription e... 174 2.7e-13 1
ZFIN|ZDB-GENE-040718-138 - symbol:tceb1b "transcription e... 174 2.7e-13 1
RGD|2318427 - symbol:LOC100365758 "elongin C-like" specie... 169 9.1e-13 1
WB|WBGene00001236 - symbol:elc-1 species:6239 "Caenorhabd... 166 1.9e-12 1
UNIPROTKB|Q9BKS1 - symbol:elc-1 "Protein ELC-1" species:6... 166 1.9e-12 1
POMBASE|SPBC1861.07 - symbol:SPBC1861.07 "elongin C (pred... 165 2.4e-12 1
DICTYBASE|DDB_G0284201 - symbol:DDB_G0284201 "putative tr... 153 4.5e-11 1
UNIPROTKB|G4NH96 - symbol:MGG_03902 "Uncharacterized prot... 146 2.5e-10 1
SGD|S000005967 - symbol:ELC1 "Elongin C, conserved among ... 114 6.1e-07 1
WB|WBGene00001237 - symbol:elc-2 species:6239 "Caenorhabd... 113 7.8e-07 1
CGD|CAL0005776 - symbol:ELC1 species:5476 "Candida albica... 104 7.0e-06 1
WB|WBGene00077680 - symbol:F54F7.10 species:6239 "Caenorh... 104 7.0e-06 1
DICTYBASE|DDB_G0269230 - symbol:fpaA "ubiquitin ligase su... 90 0.00026 1
DICTYBASE|DDB_G0273615 - symbol:fpaB-2 "ubiquitin ligase ... 90 0.00026 1
DICTYBASE|DDB_G0273251 - symbol:fpaB-1 "ubiquitin ligase ... 90 0.00026 1
ZFIN|ZDB-GENE-040426-1707 - symbol:skp1 "S-phase kinase-a... 87 0.00060 1
UNIPROTKB|E5RJ89 - symbol:TCEB1 "Transcription elongation... 85 0.00072 1
MGI|MGI:103575 - symbol:Skp1a "S-phase kinase-associated ... 86 0.00078 1
RGD|1359648 - symbol:Skp1 "S-phase kinase-associated prot... 86 0.00078 1
FB|FBgn0026175 - symbol:skpC "skpC" species:7227 "Drosoph... 85 0.00091 1
>TAIR|locus:2168454 [details] [associations]
symbol:AT5G59140 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0006511
"ubiquitin-dependent protein catabolic process" evidence=IEA]
[GO:0005829 "cytosol" evidence=IDA] [GO:0000394 "RNA splicing, via
endonucleolytic cleavage and ligation" evidence=RCA] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=RCA]
[GO:0009062 "fatty acid catabolic process" evidence=RCA]
InterPro:IPR016073 Pfam:PF03931 GO:GO:0005829 EMBL:CP002688
GenomeReviews:BA000015_GR Gene3D:3.30.710.10 InterPro:IPR011333
SUPFAM:SSF54695 GO:GO:0003746 GO:GO:0006511 EMBL:AB016890
eggNOG:NOG298860 HOGENOM:HOG000216525 KO:K03872 OMA:PGQFSEN
HSSP:Q03071 EMBL:AY045995 EMBL:AY096614 IPI:IPI00536842
RefSeq:NP_568900.1 UniGene:At.6930 ProteinModelPortal:Q9FIG0
SMR:Q9FIG0 IntAct:Q9FIG0 STRING:Q9FIG0 PaxDb:Q9FIG0 PRIDE:Q9FIG0
EnsemblPlants:AT5G59140.1 GeneID:836032 KEGG:ath:AT5G59140
TAIR:At5g59140 InParanoid:Q9FIG0 PhylomeDB:Q9FIG0
ProtClustDB:CLSN2690048 ArrayExpress:Q9FIG0 Genevestigator:Q9FIG0
Uniprot:Q9FIG0
Length = 96
Score = 298 (110.0 bits), Expect = 1.9e-26, P = 1.9e-26
Identities = 57/68 (83%), Positives = 64/68 (94%)
Query: 5 DTVKLISAEGFEFVISKEAAMVSQTIRNMLTSPGGFAETEHGEVTFPEISTTILEKICQY 64
+TVKLIS EGFEFVI +EAAMVSQTIR+MLTSPGGF+E++ G VTFP+ISTTILEKICQY
Sbjct: 3 ETVKLISMEGFEFVIDREAAMVSQTIRSMLTSPGGFSESKDGVVTFPDISTTILEKICQY 62
Query: 65 FYWSLQYS 72
FYWSLQYS
Sbjct: 63 FYWSLQYS 70
>FB|FBgn0023211 [details] [associations]
symbol:Elongin-C "Elongin C" species:7227 "Drosophila
melanogaster" [GO:0008023 "transcription elongation factor complex"
evidence=ISS] [GO:0006511 "ubiquitin-dependent protein catabolic
process" evidence=IEA] [GO:0048813 "dendrite morphogenesis"
evidence=IMP] [GO:0022008 "neurogenesis" evidence=IMP] [GO:0031462
"Cul2-RING ubiquitin ligase complex" evidence=IDA]
InterPro:IPR001232 InterPro:IPR016073 Pfam:PF03931 SMART:SM00512
EMBL:AE013599 Gene3D:3.30.710.10 InterPro:IPR011333 SUPFAM:SSF54695
GO:GO:0048813 GO:GO:0006511 eggNOG:NOG298860
GeneTree:ENSGT00390000011717 KO:K03872 OMA:PGQFSEN HSSP:Q03071
EMBL:AY070956 EMBL:AY113630 PIR:JC5794 RefSeq:NP_523794.1
RefSeq:NP_725894.1 UniGene:Dm.2829 SMR:Q7JWD6 IntAct:Q7JWD6
STRING:Q7JWD6 EnsemblMetazoa:FBtr0086540 EnsemblMetazoa:FBtr0086541
GeneID:37237 KEGG:dme:Dmel_CG9291 UCSC:CG9291-RA CTD:37237
FlyBase:FBgn0023211 InParanoid:Q7JWD6 OrthoDB:EOG4VT4DR
GenomeRNAi:37237 NextBio:802680 Uniprot:Q7JWD6
Length = 117
Score = 178 (67.7 bits), Expect = 1.0e-13, P = 1.0e-13
Identities = 34/66 (51%), Positives = 48/66 (72%)
Query: 7 VKLISAEGFEFVISKEAAMVSQTIRNMLTSPGGFAETEHGEVTFPEISTTILEKICQYFY 66
VKLIS++G EFV+ +E A+ S TIR ML+ PG FAE E EV F EI + +L+K+C YF
Sbjct: 24 VKLISSDGHEFVVKREHALTSGTIRAMLSGPGQFAENEANEVHFREIPSHVLQKVCMYFT 83
Query: 67 WSLQYS 72
+ ++Y+
Sbjct: 84 YKVRYT 89
>UNIPROTKB|Q5ZJT7 [details] [associations]
symbol:TCEB1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0006511 "ubiquitin-dependent protein catabolic process"
evidence=IEA] InterPro:IPR001232 InterPro:IPR016073 Pfam:PF03931
SMART:SM00512 Gene3D:3.30.710.10 InterPro:IPR011333 SUPFAM:SSF54695
GO:GO:0006511 CTD:6921 eggNOG:NOG298860
GeneTree:ENSGT00390000011717 HOGENOM:HOG000216525
HOVERGEN:HBG007440 KO:K03872 OMA:PGQFSEN OrthoDB:EOG41ZFCB
EMBL:AADN02024650 EMBL:AJ720347 IPI:IPI00593819
RefSeq:NP_001007889.1 UniGene:Gga.3347 SMR:Q5ZJT7 STRING:Q5ZJT7
Ensembl:ENSGALT00000025230 GeneID:420187 KEGG:gga:420187
InParanoid:Q5ZJT7 NextBio:20823136 Uniprot:Q5ZJT7
Length = 112
Score = 174 (66.3 bits), Expect = 2.7e-13, P = 2.7e-13
Identities = 32/66 (48%), Positives = 47/66 (71%)
Query: 7 VKLISAEGFEFVISKEAAMVSQTIRNMLTSPGGFAETEHGEVTFPEISTTILEKICQYFY 66
VKLIS++G EF++ +E A+ S TI+ ML+ PG FAE E EV F EI + +L K+C YF
Sbjct: 19 VKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFT 78
Query: 67 WSLQYS 72
+ ++Y+
Sbjct: 79 YKVRYT 84
>UNIPROTKB|Q2KII4 [details] [associations]
symbol:TCEB1 "Transcription elongation factor B polypeptide
1" species:9913 "Bos taurus" [GO:0005634 "nucleus" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006511 "ubiquitin-dependent protein catabolic
process" evidence=IEA] InterPro:IPR001232 InterPro:IPR016073
Pfam:PF03931 SMART:SM00512 GO:GO:0005634 GO:GO:0006355
GO:GO:0006351 Gene3D:3.30.710.10 InterPro:IPR011333 SUPFAM:SSF54695
GO:GO:0006511 EMBL:BC112626 IPI:IPI00697437 RefSeq:NP_001039958.1
UniGene:Bt.21769 ProteinModelPortal:Q2KII4 SMR:Q2KII4 STRING:Q2KII4
PRIDE:Q2KII4 Ensembl:ENSBTAT00000002843 GeneID:540859
KEGG:bta:540859 CTD:6921 eggNOG:NOG298860
GeneTree:ENSGT00390000011717 HOGENOM:HOG000216525
HOVERGEN:HBG007440 InParanoid:Q2KII4 KO:K03872 OMA:PGQFSEN
OrthoDB:EOG41ZFCB NextBio:20878879 Uniprot:Q2KII4
Length = 112
Score = 174 (66.3 bits), Expect = 2.7e-13, P = 2.7e-13
Identities = 32/66 (48%), Positives = 47/66 (71%)
Query: 7 VKLISAEGFEFVISKEAAMVSQTIRNMLTSPGGFAETEHGEVTFPEISTTILEKICQYFY 66
VKLIS++G EF++ +E A+ S TI+ ML+ PG FAE E EV F EI + +L K+C YF
Sbjct: 19 VKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFT 78
Query: 67 WSLQYS 72
+ ++Y+
Sbjct: 79 YKVRYT 84
>UNIPROTKB|E2R129 [details] [associations]
symbol:TCEB1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006511 "ubiquitin-dependent protein
catabolic process" evidence=IEA] InterPro:IPR001232
InterPro:IPR016073 Pfam:PF03931 SMART:SM00512 Gene3D:3.30.710.10
InterPro:IPR011333 SUPFAM:SSF54695 GO:GO:0006511
GeneTree:ENSGT00390000011717 EMBL:AAEX03015871
ProteinModelPortal:E2R129 PRIDE:E2R129 Ensembl:ENSCAFT00000012970
OMA:DEKSTEY NextBio:20853318 Uniprot:E2R129
Length = 151
Score = 174 (66.3 bits), Expect = 2.7e-13, P = 2.7e-13
Identities = 32/66 (48%), Positives = 47/66 (71%)
Query: 7 VKLISAEGFEFVISKEAAMVSQTIRNMLTSPGGFAETEHGEVTFPEISTTILEKICQYFY 66
VKLIS++G EF++ +E A+ S TI+ ML+ PG FAE E EV F EI + +L K+C YF
Sbjct: 59 VKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFT 118
Query: 67 WSLQYS 72
+ ++Y+
Sbjct: 119 YKVRYT 124
>UNIPROTKB|J9P2H3 [details] [associations]
symbol:TCEB1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006511 "ubiquitin-dependent protein
catabolic process" evidence=IEA] InterPro:IPR001232
InterPro:IPR016073 Pfam:PF03931 SMART:SM00512 Gene3D:3.30.710.10
InterPro:IPR011333 SUPFAM:SSF54695 GO:GO:0006511 CTD:6921
GeneTree:ENSGT00390000011717 KO:K03872 EMBL:AAEX03015871
RefSeq:XP_535104.1 ProteinModelPortal:J9P2H3
Ensembl:ENSCAFT00000043688 GeneID:477914 KEGG:cfa:477914
Uniprot:J9P2H3
Length = 112
Score = 174 (66.3 bits), Expect = 2.7e-13, P = 2.7e-13
Identities = 32/66 (48%), Positives = 47/66 (71%)
Query: 7 VKLISAEGFEFVISKEAAMVSQTIRNMLTSPGGFAETEHGEVTFPEISTTILEKICQYFY 66
VKLIS++G EF++ +E A+ S TI+ ML+ PG FAE E EV F EI + +L K+C YF
Sbjct: 19 VKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFT 78
Query: 67 WSLQYS 72
+ ++Y+
Sbjct: 79 YKVRYT 84
>UNIPROTKB|E5RHG8 [details] [associations]
symbol:TCEB1 "Transcription elongation factor B polypeptide
1" species:9606 "Homo sapiens" [GO:0006511 "ubiquitin-dependent
protein catabolic process" evidence=IEA] [GO:0030891 "VCB complex"
evidence=IEA] [GO:0032403 "protein complex binding" evidence=IEA]
[GO:0032968 "positive regulation of transcription elongation from
RNA polymerase II promoter" evidence=IEA] InterPro:IPR016073
Pfam:PF03931 Gene3D:3.30.710.10 InterPro:IPR011333 SUPFAM:SSF54695
GO:GO:0006511 EMBL:AC022868 HGNC:HGNC:11617 ChiTaRS:TCEB1
IPI:IPI00982721 ProteinModelPortal:E5RHG8 SMR:E5RHG8
Ensembl:ENST00000519082 ArrayExpress:E5RHG8 Bgee:E5RHG8
Uniprot:E5RHG8
Length = 89
Score = 174 (66.3 bits), Expect = 2.7e-13, P = 2.7e-13
Identities = 32/66 (48%), Positives = 47/66 (71%)
Query: 7 VKLISAEGFEFVISKEAAMVSQTIRNMLTSPGGFAETEHGEVTFPEISTTILEKICQYFY 66
VKLIS++G EF++ +E A+ S TI+ ML+ PG FAE E EV F EI + +L K+C YF
Sbjct: 19 VKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFT 78
Query: 67 WSLQYS 72
+ ++Y+
Sbjct: 79 YKVRYT 84
>UNIPROTKB|Q15369 [details] [associations]
symbol:TCEB1 "Transcription elongation factor B polypeptide
1" species:9606 "Homo sapiens" [GO:0006511 "ubiquitin-dependent
protein catabolic process" evidence=IEA] [GO:0019048 "virus-host
interaction" evidence=IEA] [GO:0030891 "VCB complex" evidence=IEA]
[GO:0032403 "protein complex binding" evidence=IEA] [GO:0032968
"positive regulation of transcription elongation from RNA
polymerase II promoter" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=TAS] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0005829 "cytosol" evidence=TAS] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=TAS]
[GO:0006368 "transcription elongation from RNA polymerase II
promoter" evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0016032 "viral reproduction" evidence=TAS] [GO:0033554
"cellular response to stress" evidence=TAS] [GO:0050434 "positive
regulation of viral transcription" evidence=TAS] [GO:0061418
"regulation of transcription from RNA polymerase II promoter in
response to hypoxia" evidence=TAS] [GO:0071456 "cellular response
to hypoxia" evidence=TAS] Reactome:REACT_71 InterPro:IPR001232
InterPro:IPR016073 Pfam:PF03931 SMART:SM00512 Reactome:REACT_120956
GO:GO:0005829 Reactome:REACT_116125 Reactome:REACT_6900
GO:GO:0019048 GO:GO:0005654 GO:GO:0016032 Gene3D:3.30.710.10
InterPro:IPR011333 SUPFAM:SSF54695 GO:GO:0006368 GO:GO:0006511
Pathway_Interaction_DB:hif1apathway GO:GO:0061418 PDB:2XAI
PDBsum:2XAI Reactome:REACT_1788 GO:GO:0050434 Reactome:REACT_1892
PDB:1LM8 PDB:1LQB PDB:1VCB PDB:2C9W PDB:2IZV PDB:3DCG PDB:3ZRC
PDB:3ZRF PDB:3ZTC PDB:3ZTD PDB:3ZUN PDB:4AJY PDB:4AWJ PDB:4B95
PDB:4B9K PDBsum:1LM8 PDBsum:1LQB PDBsum:1VCB PDBsum:2C9W
PDBsum:2IZV PDBsum:3DCG PDBsum:3ZRC PDBsum:3ZRF PDBsum:3ZTC
PDBsum:3ZTD PDBsum:3ZUN PDBsum:4AJY PDBsum:4AWJ PDBsum:4B95
PDBsum:4B9K CTD:6921 eggNOG:NOG298860 HOGENOM:HOG000216525
HOVERGEN:HBG007440 KO:K03872 OMA:PGQFSEN OrthoDB:EOG41ZFCB
EMBL:L34587 EMBL:BX649138 EMBL:AC022868 EMBL:BC013809 EMBL:BC093065
EMBL:BC100028 EMBL:BC100283 IPI:IPI00300341 IPI:IPI00791185
RefSeq:NP_001191786.1 RefSeq:NP_001191787.1 RefSeq:NP_001191788.1
RefSeq:NP_001191789.1 RefSeq:NP_001191790.1 RefSeq:NP_001191791.1
RefSeq:NP_005639.1 UniGene:Hs.533437 UniGene:Hs.554594
UniGene:Hs.731928 ProteinModelPortal:Q15369 SMR:Q15369
DIP:DIP-29571N IntAct:Q15369 MINT:MINT-1323870 STRING:Q15369
PhosphoSite:Q15369 DMDM:32699511 PaxDb:Q15369 PRIDE:Q15369
DNASU:6921 Ensembl:ENST00000284811 Ensembl:ENST00000518127
Ensembl:ENST00000519487 Ensembl:ENST00000520210
Ensembl:ENST00000520242 Ensembl:ENST00000522337
Ensembl:ENST00000523815 GeneID:6921 KEGG:hsa:6921 UCSC:uc003xzx.2
GeneCards:GC08M074858 HGNC:HGNC:11617 MIM:600788 neXtProt:NX_Q15369
PharmGKB:PA36376 InParanoid:Q15369 ChiTaRS:TCEB1
EvolutionaryTrace:Q15369 GenomeRNAi:6921 NextBio:27077
ArrayExpress:Q15369 Bgee:Q15369 CleanEx:HS_TCEB1
Genevestigator:Q15369 GermOnline:ENSG00000154582 Uniprot:Q15369
Length = 112
Score = 174 (66.3 bits), Expect = 2.7e-13, P = 2.7e-13
Identities = 32/66 (48%), Positives = 47/66 (71%)
Query: 7 VKLISAEGFEFVISKEAAMVSQTIRNMLTSPGGFAETEHGEVTFPEISTTILEKICQYFY 66
VKLIS++G EF++ +E A+ S TI+ ML+ PG FAE E EV F EI + +L K+C YF
Sbjct: 19 VKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFT 78
Query: 67 WSLQYS 72
+ ++Y+
Sbjct: 79 YKVRYT 84
>UNIPROTKB|F2Z545 [details] [associations]
symbol:TCEB1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006511 "ubiquitin-dependent protein catabolic process"
evidence=IEA] InterPro:IPR001232 InterPro:IPR016073 Pfam:PF03931
SMART:SM00512 Gene3D:3.30.710.10 InterPro:IPR011333 SUPFAM:SSF54695
GO:GO:0006511 GeneTree:ENSGT00390000011717 KO:K03872 OMA:PGQFSEN
EMBL:CU210930 RefSeq:XP_001927356.3 RefSeq:XP_003355080.1
RefSeq:XP_003355081.1 RefSeq:XP_003355082.1
ProteinModelPortal:F2Z545 SMR:F2Z545 PRIDE:F2Z545
Ensembl:ENSSSCT00000006770 GeneID:100153381 KEGG:ssc:100153381
Uniprot:F2Z545
Length = 112
Score = 174 (66.3 bits), Expect = 2.7e-13, P = 2.7e-13
Identities = 32/66 (48%), Positives = 47/66 (71%)
Query: 7 VKLISAEGFEFVISKEAAMVSQTIRNMLTSPGGFAETEHGEVTFPEISTTILEKICQYFY 66
VKLIS++G EF++ +E A+ S TI+ ML+ PG FAE E EV F EI + +L K+C YF
Sbjct: 19 VKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFT 78
Query: 67 WSLQYS 72
+ ++Y+
Sbjct: 79 YKVRYT 84
>MGI|MGI:1915173 [details] [associations]
symbol:Tceb1 "transcription elongation factor B (SIII),
polypeptide 1" species:10090 "Mus musculus" [GO:0005515 "protein
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006511 "ubiquitin-dependent protein catabolic
process" evidence=IEA] [GO:0030891 "VCB complex" evidence=ISO]
[GO:0032403 "protein complex binding" evidence=ISO] [GO:0032968
"positive regulation of transcription elongation from RNA
polymerase II promoter" evidence=ISO] InterPro:IPR001232
InterPro:IPR016073 Pfam:PF03931 SMART:SM00512 MGI:MGI:1915173
GO:GO:0005634 GO:GO:0006355 GO:GO:0006351 Gene3D:3.30.710.10
InterPro:IPR011333 SUPFAM:SSF54695 GO:GO:0006511 PDB:2JZ3
PDBsum:2JZ3 PDB:2FNJ PDBsum:2FNJ CTD:6921 eggNOG:NOG298860
GeneTree:ENSGT00390000011717 HOGENOM:HOG000216525
HOVERGEN:HBG007440 KO:K03872 OMA:PGQFSEN OrthoDB:EOG41ZFCB
ChiTaRS:TCEB1 EMBL:AK013089 EMBL:AK011757 EMBL:AK011958
EMBL:AK012909 EMBL:AK039746 EMBL:BC009104 EMBL:BC028545
IPI:IPI00323130 RefSeq:NP_080732.1 RefSeq:XP_003946114.1
UniGene:Mm.289248 ProteinModelPortal:P83940 SMR:P83940
IntAct:P83940 MINT:MINT-1851784 STRING:P83940 PhosphoSite:P83940
PaxDb:P83940 PRIDE:P83940 Ensembl:ENSMUST00000115352
GeneID:101056616 GeneID:67923 KEGG:mmu:101056616 KEGG:mmu:67923
UCSC:uc007ajv.1 InParanoid:P83940 EvolutionaryTrace:P83940
NextBio:459323 Bgee:P83940 Genevestigator:P83940
GermOnline:ENSMUSG00000042730 Uniprot:P83940
Length = 112
Score = 174 (66.3 bits), Expect = 2.7e-13, P = 2.7e-13
Identities = 32/66 (48%), Positives = 47/66 (71%)
Query: 7 VKLISAEGFEFVISKEAAMVSQTIRNMLTSPGGFAETEHGEVTFPEISTTILEKICQYFY 66
VKLIS++G EF++ +E A+ S TI+ ML+ PG FAE E EV F EI + +L K+C YF
Sbjct: 19 VKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFT 78
Query: 67 WSLQYS 72
+ ++Y+
Sbjct: 79 YKVRYT 84
>RGD|620658 [details] [associations]
symbol:Tceb1 "transcription elongation factor B (SIII),
polypeptide 1" species:10116 "Rattus norvegicus" [GO:0005634
"nucleus" evidence=TAS] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=TAS] [GO:0006511
"ubiquitin-dependent protein catabolic process" evidence=IEA]
[GO:0030891 "VCB complex" evidence=IDA] [GO:0032403 "protein
complex binding" evidence=IPI] [GO:0032968 "positive regulation of
transcription elongation from RNA polymerase II promoter"
evidence=IDA] [GO:0004842 "ubiquitin-protein ligase activity"
evidence=IC] InterPro:IPR001232 InterPro:IPR016073 Pfam:PF03931
SMART:SM00512 RGD:620658 GO:GO:0005634 GO:GO:0006351
Gene3D:3.30.710.10 InterPro:IPR011333 SUPFAM:SSF54695 GO:GO:0006511
GO:GO:0032968 GO:GO:0030891 CTD:6921 eggNOG:NOG298860
HOGENOM:HOG000216525 HOVERGEN:HBG007440 KO:K03872 OrthoDB:EOG41ZFCB
EMBL:L29259 EMBL:BC060566 IPI:IPI00206015 RefSeq:NP_001257490.1
RefSeq:NP_001257491.1 RefSeq:NP_001257492.1 RefSeq:NP_072115.1
UniGene:Rn.38378 UniGene:Rn.48516 UniGene:Rn.5996
ProteinModelPortal:P83941 SMR:P83941 IntAct:P83941 STRING:P83941
PhosphoSite:P83941 PRIDE:P83941 Ensembl:ENSRNOT00000000132
GeneID:64525 KEGG:rno:64525 UCSC:RGD:620658 InParanoid:P83941
NextBio:613346 Genevestigator:P83941 GermOnline:ENSRNOG00000000120
Uniprot:P83941
Length = 112
Score = 174 (66.3 bits), Expect = 2.7e-13, P = 2.7e-13
Identities = 32/66 (48%), Positives = 47/66 (71%)
Query: 7 VKLISAEGFEFVISKEAAMVSQTIRNMLTSPGGFAETEHGEVTFPEISTTILEKICQYFY 66
VKLIS++G EF++ +E A+ S TI+ ML+ PG FAE E EV F EI + +L K+C YF
Sbjct: 19 VKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFT 78
Query: 67 WSLQYS 72
+ ++Y+
Sbjct: 79 YKVRYT 84
>ZFIN|ZDB-GENE-040912-120 [details] [associations]
symbol:tceb1a "transcription elongation factor B
(SIII), polypeptide 1a" species:7955 "Danio rerio" [GO:0006511
"ubiquitin-dependent protein catabolic process" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] InterPro:IPR001232
InterPro:IPR016073 Pfam:PF03931 SMART:SM00512
ZFIN:ZDB-GENE-040912-120 Gene3D:3.30.710.10 InterPro:IPR011333
SUPFAM:SSF54695 GO:GO:0006511 eggNOG:NOG298860
GeneTree:ENSGT00390000011717 HOGENOM:HOG000216525
HOVERGEN:HBG007440 OrthoDB:EOG41ZFCB OMA:DEKSTEY EMBL:CR405710
EMBL:BC081421 IPI:IPI00503491 RefSeq:NP_001004673.1
UniGene:Dr.48734 SMR:Q66IB1 STRING:Q66IB1
Ensembl:ENSDART00000066700 Ensembl:ENSDART00000146911 GeneID:447935
KEGG:dre:447935 CTD:447935 InParanoid:Q66IB1 NextBio:20832453
Uniprot:Q66IB1
Length = 113
Score = 174 (66.3 bits), Expect = 2.7e-13, P = 2.7e-13
Identities = 32/66 (48%), Positives = 47/66 (71%)
Query: 7 VKLISAEGFEFVISKEAAMVSQTIRNMLTSPGGFAETEHGEVTFPEISTTILEKICQYFY 66
VKLIS++G EF++ +E A+ S TI+ ML+ PG FAE E EV F EI + +L K+C YF
Sbjct: 20 VKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFT 79
Query: 67 WSLQYS 72
+ ++Y+
Sbjct: 80 YKVRYT 85
>ZFIN|ZDB-GENE-040718-138 [details] [associations]
symbol:tceb1b "transcription elongation factor B
(SIII), polypeptide 1b" species:7955 "Danio rerio" [GO:0006511
"ubiquitin-dependent protein catabolic process" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] InterPro:IPR001232
InterPro:IPR016073 Pfam:PF03931 SMART:SM00512
ZFIN:ZDB-GENE-040718-138 Gene3D:3.30.710.10 InterPro:IPR011333
SUPFAM:SSF54695 GO:GO:0006511 eggNOG:NOG298860
GeneTree:ENSGT00390000011717 HOGENOM:HOG000216525
HOVERGEN:HBG007440 KO:K03872 OrthoDB:EOG41ZFCB EMBL:CR788254
EMBL:BC095636 IPI:IPI00506773 RefSeq:NP_001002440.2
UniGene:Dr.31373 SMR:Q502M9 STRING:Q502M9
Ensembl:ENSDART00000142575 GeneID:436713 KEGG:dre:436713 CTD:436713
InParanoid:Q502M9 NextBio:20831155 Uniprot:Q502M9
Length = 112
Score = 174 (66.3 bits), Expect = 2.7e-13, P = 2.7e-13
Identities = 32/66 (48%), Positives = 47/66 (71%)
Query: 7 VKLISAEGFEFVISKEAAMVSQTIRNMLTSPGGFAETEHGEVTFPEISTTILEKICQYFY 66
VKLIS++G EF++ +E A+ S TI+ ML+ PG FAE E EV F EI + +L K+C YF
Sbjct: 19 VKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFT 78
Query: 67 WSLQYS 72
+ ++Y+
Sbjct: 79 YKVRYT 84
>RGD|2318427 [details] [associations]
symbol:LOC100365758 "elongin C-like" species:10116 "Rattus
norvegicus" [GO:0006511 "ubiquitin-dependent protein catabolic
process" evidence=IEA] InterPro:IPR001232 InterPro:IPR016073
Pfam:PF03931 SMART:SM00512 RGD:2318427 Gene3D:3.30.710.10
InterPro:IPR011333 SUPFAM:SSF54695 GO:GO:0006511 OrthoDB:EOG41ZFCB
IPI:IPI00781199 Ensembl:ENSRNOT00000060096 Uniprot:D3ZIW0
Length = 121
Score = 169 (64.5 bits), Expect = 9.1e-13, P = 9.1e-13
Identities = 32/66 (48%), Positives = 46/66 (69%)
Query: 7 VKLISAEGFEFVISKEAAMVSQTIRNMLTSPGGFAETEHGEVTFPEISTTILEKICQYFY 66
VKLIS++G EF++ +E A+ S TI+ ML+ PG FAE E EV F EI + L K+C YF
Sbjct: 19 VKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEVNFREIPSHALSKVCMYFT 78
Query: 67 WSLQYS 72
+ ++Y+
Sbjct: 79 YRVRYT 84
>WB|WBGene00001236 [details] [associations]
symbol:elc-1 species:6239 "Caenorhabditis elegans"
[GO:0006511 "ubiquitin-dependent protein catabolic process"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP] [GO:0006898
"receptor-mediated endocytosis" evidence=IMP] [GO:0051759 "sister
chromosome movement towards spindle pole involved in meiotic sister
chromatid segregation" evidence=IMP] [GO:0007138 "meiotic anaphase
II" evidence=IMP] [GO:0008595 "anterior/posterior axis
specification, embryo" evidence=IMP] [GO:0019904 "protein domain
specific binding" evidence=IPI] InterPro:IPR001232
InterPro:IPR016073 Pfam:PF03931 SMART:SM00512 GO:GO:0009792
GO:GO:0006898 GO:GO:0040007 GO:GO:0002119 GO:GO:0008595
Gene3D:3.30.710.10 InterPro:IPR011333 SUPFAM:SSF54695 GO:GO:0006511
EMBL:FO081643 GO:GO:0007138 GO:GO:0051759 eggNOG:NOG298860
GeneTree:ENSGT00390000011717 HOGENOM:HOG000216525 KO:K03872
OMA:PGQFSEN HSSP:Q03071 RefSeq:NP_497405.1
ProteinModelPortal:Q9BKS1 SMR:Q9BKS1 DIP:DIP-26192N IntAct:Q9BKS1
MINT:MINT-1088427 STRING:Q9BKS1 PaxDb:Q9BKS1
EnsemblMetazoa:Y82E9BR.15 GeneID:190775 KEGG:cel:CELE_Y82E9BR.15
UCSC:Y82E9BR.15 CTD:190775 WormBase:Y82E9BR.15 InParanoid:Q9BKS1
NextBio:946924 Uniprot:Q9BKS1
Length = 124
Score = 166 (63.5 bits), Expect = 1.9e-12, P = 1.9e-12
Identities = 31/66 (46%), Positives = 47/66 (71%)
Query: 7 VKLISAEGFEFVISKEAAMVSQTIRNMLTSPGGFAETEHGEVTFPEISTTILEKICQYFY 66
VKL+S++ EF+I +E A+ S TIR ML+ PG +AE E V F EI + +L+K+CQYF
Sbjct: 31 VKLVSSDDHEFIIKRELALTSGTIRAMLSGPGVYAENESNVVYFREIPSHVLQKVCQYFA 90
Query: 67 WSLQYS 72
+ ++Y+
Sbjct: 91 YKVRYT 96
>UNIPROTKB|Q9BKS1 [details] [associations]
symbol:elc-1 "Protein ELC-1" species:6239 "Caenorhabditis
elegans" [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR001232 InterPro:IPR016073 Pfam:PF03931 SMART:SM00512
GO:GO:0009792 GO:GO:0006898 GO:GO:0040007 GO:GO:0002119
GO:GO:0008595 Gene3D:3.30.710.10 InterPro:IPR011333 SUPFAM:SSF54695
GO:GO:0006511 EMBL:FO081643 GO:GO:0007138 GO:GO:0051759
eggNOG:NOG298860 GeneTree:ENSGT00390000011717 HOGENOM:HOG000216525
KO:K03872 OMA:PGQFSEN HSSP:Q03071 RefSeq:NP_497405.1
ProteinModelPortal:Q9BKS1 SMR:Q9BKS1 DIP:DIP-26192N IntAct:Q9BKS1
MINT:MINT-1088427 STRING:Q9BKS1 PaxDb:Q9BKS1
EnsemblMetazoa:Y82E9BR.15 GeneID:190775 KEGG:cel:CELE_Y82E9BR.15
UCSC:Y82E9BR.15 CTD:190775 WormBase:Y82E9BR.15 InParanoid:Q9BKS1
NextBio:946924 Uniprot:Q9BKS1
Length = 124
Score = 166 (63.5 bits), Expect = 1.9e-12, P = 1.9e-12
Identities = 31/66 (46%), Positives = 47/66 (71%)
Query: 7 VKLISAEGFEFVISKEAAMVSQTIRNMLTSPGGFAETEHGEVTFPEISTTILEKICQYFY 66
VKL+S++ EF+I +E A+ S TIR ML+ PG +AE E V F EI + +L+K+CQYF
Sbjct: 31 VKLVSSDDHEFIIKRELALTSGTIRAMLSGPGVYAENESNVVYFREIPSHVLQKVCQYFA 90
Query: 67 WSLQYS 72
+ ++Y+
Sbjct: 91 YKVRYT 96
>POMBASE|SPBC1861.07 [details] [associations]
symbol:SPBC1861.07 "elongin C (predicted)" species:4896
"Schizosaccharomyces pombe" [GO:0003674 "molecular_function"
evidence=ND] [GO:0005634 "nucleus" evidence=IDA] [GO:0005829
"cytosol" evidence=IDA] [GO:0006511 "ubiquitin-dependent protein
catabolic process" evidence=IEA] [GO:0016567 "protein
ubiquitination" evidence=ISM] [GO:0034243 "regulation of
transcription elongation from RNA polymerase II promoter"
evidence=ISO] [GO:0070449 "elongin complex" evidence=ISO]
InterPro:IPR001232 InterPro:IPR016073 Pfam:PF03931 SMART:SM00512
PomBase:SPBC1861.07 GO:GO:0005829 EMBL:CU329671
GenomeReviews:CU329671_GR GO:GO:0016567 Gene3D:3.30.710.10
InterPro:IPR011333 SUPFAM:SSF54695 GO:GO:0006511 GO:GO:0034243
GO:GO:0070449 eggNOG:NOG298860 HOGENOM:HOG000216525 KO:K03872
OMA:PGQFSEN HSSP:P83940 PIR:T39746 RefSeq:NP_596724.1
ProteinModelPortal:Q9USX9 STRING:Q9USX9 EnsemblFungi:SPBC1861.07.1
GeneID:2539714 KEGG:spo:SPBC1861.07 OrthoDB:EOG405W9Q
NextBio:20800866 Uniprot:Q9USX9
Length = 97
Score = 165 (63.1 bits), Expect = 2.4e-12, P = 2.4e-12
Identities = 33/71 (46%), Positives = 50/71 (70%)
Query: 1 MKKEDTVKLISAEGFEFVISKEAAMVSQTIRNMLTSPGGFAETEHGEVTFPEISTTILEK 60
M+KE V+LIS +GF F++ KE A +S TIR +L G F+E + E TFP+I T+LEK
Sbjct: 1 MEKE-YVRLISGDGFVFILEKEIACLSGTIRAILNE-GIFSEAQKNECTFPDIRATLLEK 58
Query: 61 ICQYFYWSLQY 71
+C+Y +++ +Y
Sbjct: 59 VCEYLHYNYRY 69
>DICTYBASE|DDB_G0284201 [details] [associations]
symbol:DDB_G0284201 "putative transcription
elongation factor B polypeptide 1" species:44689 "Dictyostelium
discoideum" [GO:0006511 "ubiquitin-dependent protein catabolic
process" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0003674 "molecular_function" evidence=ND] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0044351 "macropinocytosis"
evidence=RCA] InterPro:IPR016073 Pfam:PF03931
dictyBase:DDB_G0284201 GO:GO:0005634 GenomeReviews:CM000153_GR
GO:GO:0006355 GO:GO:0006351 Gene3D:3.30.710.10 InterPro:IPR011333
SUPFAM:SSF54695 GO:GO:0006511 EMBL:AAFI02000064 eggNOG:NOG298860
KO:K03872 OMA:PGQFSEN RefSeq:XP_638640.1 HSSP:P83940
ProteinModelPortal:Q54Q05 STRING:Q54Q05 EnsemblProtists:DDB0238113
GeneID:8624471 KEGG:ddi:DDB_G0284201 ProtClustDB:CLSZ2430280
Uniprot:Q54Q05
Length = 109
Score = 153 (58.9 bits), Expect = 4.5e-11, P = 4.5e-11
Identities = 30/69 (43%), Positives = 48/69 (69%)
Query: 5 DTVKLISAEGFEFVISKEAAMVSQTIRNMLTSPGG-FAETEHGEVTFPEISTTILEKICQ 63
D ++L S+ G EFV+S++ + VS TI++ML+ F E ++ E+ F EIST +LEK+ Q
Sbjct: 13 DVLRLYSSTGHEFVLSRKMSYVSGTIKSMLSGDNSNFMEDQNNEIRFREISTPVLEKVIQ 72
Query: 64 YFYWSLQYS 72
YFY+ +Y+
Sbjct: 73 YFYFKNKYT 81
>UNIPROTKB|G4NH96 [details] [associations]
symbol:MGG_03902 "Uncharacterized protein" species:242507
"Magnaporthe oryzae 70-15" [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR016073 Pfam:PF03931 Gene3D:3.30.710.10
InterPro:IPR011333 SUPFAM:SSF54695 GO:GO:0006511 EMBL:CM001236
KO:K03872 RefSeq:XP_003719973.1 ProteinModelPortal:G4NH96
EnsemblFungi:MGG_03902T0 GeneID:2677196 KEGG:mgr:MGG_03902
Uniprot:G4NH96
Length = 106
Score = 146 (56.5 bits), Expect = 2.5e-10, P = 2.5e-10
Identities = 31/66 (46%), Positives = 43/66 (65%)
Query: 3 KEDTVKLISAEGFEFVISKEAAMVSQTIRNMLTSPGGFAETEHGEVTFPEISTTILEKIC 62
K + LIS EG+EFV+ +EAA VS TIR M+ G F+E+E G F +I+ +L K+
Sbjct: 8 KSKYITLISREGYEFVVLREAAAVSSTIRKMVN--GMFSESETGRCHFEDINGVVLSKVV 65
Query: 63 QYF-YW 67
+YF YW
Sbjct: 66 EYFHYW 71
>SGD|S000005967 [details] [associations]
symbol:ELC1 "Elongin C, conserved among eukaryotes"
species:4932 "Saccharomyces cerevisiae" [GO:0004842
"ubiquitin-protein ligase activity" evidence=IDA] [GO:0006511
"ubiquitin-dependent protein catabolic process" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0070449 "elongin complex" evidence=IPI]
[GO:0042787 "protein ubiquitination involved in ubiquitin-dependent
protein catabolic process" evidence=IDA;IMP] [GO:0031463 "Cul3-RING
ubiquitin ligase complex" evidence=IMP;IPI] [GO:0070911 "global
genome nucleotide-excision repair" evidence=IMP] InterPro:IPR001232
InterPro:IPR016073 Pfam:PF03931 SMART:SM00512 SGD:S000005967
GO:GO:0005737 Gene3D:3.30.710.10 InterPro:IPR011333 SUPFAM:SSF54695
GO:GO:0070911 EMBL:BK006949 GO:GO:0042787 GO:GO:0031463 EMBL:U44030
GO:GO:0070449 eggNOG:NOG298860 GeneTree:ENSGT00390000011717
HOGENOM:HOG000216525 KO:K03872 OMA:PGQFSEN OrthoDB:EOG405W9Q
EMBL:AB007691 EMBL:AY558329 PIR:JC5792 RefSeq:NP_015279.1 PDB:1HV2
PDBsum:1HV2 ProteinModelPortal:Q03071 SMR:Q03071 DIP:DIP-6531N
IntAct:Q03071 MINT:MINT-708160 STRING:Q03071 PaxDb:Q03071
EnsemblFungi:YPL046C GeneID:856061 KEGG:sce:YPL046C CYGD:YPL046c
EvolutionaryTrace:Q03071 NextBio:981038 Genevestigator:Q03071
GermOnline:YPL046C Uniprot:Q03071
Length = 99
Score = 114 (45.2 bits), Expect = 6.1e-07, P = 6.1e-07
Identities = 25/69 (36%), Positives = 43/69 (62%)
Query: 4 EDTVKLISAEGFEFVISKEAAMVSQTIRNMLTSPGGFAETEHGEVTFPEISTTILEKICQ 63
+D V L+S + E+ IS+ AAM+S T++ M+ P F E++ G + + + ILEK +
Sbjct: 3 QDFVTLVSKDDKEYEISRSAAMISPTLKAMIEGP--FRESK-GRIELKQFDSHILEKAVE 59
Query: 64 YFYWSLQYS 72
Y ++L+YS
Sbjct: 60 YLNYNLKYS 68
>WB|WBGene00001237 [details] [associations]
symbol:elc-2 species:6239 "Caenorhabditis elegans"
[GO:0006511 "ubiquitin-dependent protein catabolic process"
evidence=IEA] InterPro:IPR001232 InterPro:IPR016073 Pfam:PF03931
SMART:SM00512 Gene3D:3.30.710.10 InterPro:IPR011333 SUPFAM:SSF54695
GO:GO:0006511 eggNOG:NOG298860 GeneTree:ENSGT00390000011717
HOGENOM:HOG000216525 EMBL:FO081264 PIR:T16211 PIR:T26129
HSSP:Q03071 ProteinModelPortal:Q23153 SMR:Q23153 STRING:Q23153
EnsemblMetazoa:W03H1.2 UCSC:W03H1.2 WormBase:W03H1.2
InParanoid:Q23153 NextBio:941466 Uniprot:Q23153
Length = 163
Score = 113 (44.8 bits), Expect = 7.8e-07, P = 7.8e-07
Identities = 21/65 (32%), Positives = 37/65 (56%)
Query: 7 VKLISAEGFEFVISKEAAMVSQTIRNMLTSPGGFAETEHGEVTFPEISTTILEKICQYFY 66
VKL+S + EF+I +E AM S+++R + +P + V F + + IL+K+C Y
Sbjct: 71 VKLVSNDDHEFIIKREVAMTSKSLRELFANPTVDLAAANNTVYFSDFQSHILQKVCHYLA 130
Query: 67 WSLQY 71
+ +Y
Sbjct: 131 YKTKY 135
>CGD|CAL0005776 [details] [associations]
symbol:ELC1 species:5476 "Candida albicans" [GO:0005829
"cytosol" evidence=IEA] [GO:0070449 "elongin complex" evidence=IEA]
[GO:0031463 "Cul3-RING ubiquitin ligase complex" evidence=IEA]
[GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA]
[GO:0070911 "global genome nucleotide-excision repair"
evidence=IEA] [GO:0042787 "protein ubiquitination involved in
ubiquitin-dependent protein catabolic process" evidence=IEA]
CGD:CAL0005776 Gene3D:3.30.710.10 InterPro:IPR011333
SUPFAM:SSF54695 eggNOG:NOG298860 HOGENOM:HOG000216525 KO:K03872
EMBL:AACQ01000163 EMBL:AACQ01000164 RefSeq:XP_712207.1
RefSeq:XP_712237.1 ProteinModelPortal:Q59RB3 STRING:Q59RB3
GeneID:3646151 GeneID:3646181 KEGG:cal:CaO19.14139
KEGG:cal:CaO19.6849 Uniprot:Q59RB3
Length = 100
Score = 104 (41.7 bits), Expect = 7.0e-06, P = 7.0e-06
Identities = 24/65 (36%), Positives = 39/65 (60%)
Query: 7 VKLISAEGFEFVISKEAAMVSQTIRNMLTSPGGFAETEHGEVTFPEISTTILEKICQYFY 66
V L+S++ F+FVISK+ A +S +RN GF E + G++ ++ ILE I +Y Y
Sbjct: 9 VTLVSSDNFKFVISKDVASISSVLRNSQ----GFEEGKTGKIKL-DMDGDILECIVEYLY 63
Query: 67 WSLQY 71
+ +Y
Sbjct: 64 YHYKY 68
>WB|WBGene00077680 [details] [associations]
symbol:F54F7.10 species:6239 "Caenorhabditis elegans"
[GO:0006511 "ubiquitin-dependent protein catabolic process"
evidence=IEA] InterPro:IPR016073 Pfam:PF03931 Gene3D:3.30.710.10
InterPro:IPR011333 SUPFAM:SSF54695 GO:GO:0006511
GeneTree:ENSGT00390000011717 EMBL:Z67755 RefSeq:NP_001123148.1
UniGene:Cel.37154 ProteinModelPortal:B1Q256 SMR:B1Q256
STRING:B1Q256 EnsemblMetazoa:F54F7.10 GeneID:6418855
KEGG:cel:CELE_F54F7.10 UCSC:F54F7.10 CTD:6418855 WormBase:F54F7.10
eggNOG:NOG275005 HOGENOM:HOG000020620 InParanoid:B1Q256 OMA:LVSNDNH
NextBio:20901907 Uniprot:B1Q256
Length = 138
Score = 104 (41.7 bits), Expect = 7.0e-06, P = 7.0e-06
Identities = 23/71 (32%), Positives = 39/71 (54%)
Query: 1 MKKEDTVKLISAEGFEFVISKEAAMVSQTIRNMLTSPGGFAETEHGEVTFPEISTTILEK 60
+K + VKL+S + E+ I ++ A S+ IR+ML PG T + V +++ L+K
Sbjct: 41 VKHREYVKLVSNDNHEYYIQRDLAETSRIIRDMLHCPG--RSTSNCTVYLHMVNSRTLQK 98
Query: 61 ICQYFYWSLQY 71
+C Y + QY
Sbjct: 99 VCHYLAYQKQY 109
>DICTYBASE|DDB_G0269230 [details] [associations]
symbol:fpaA "ubiquitin ligase subunit SKP1"
species:44689 "Dictyostelium discoideum" [GO:0005515 "protein
binding" evidence=IPI] [GO:0030587 "sorocarp development"
evidence=IMP] [GO:0005938 "cell cortex" evidence=IDA] [GO:0005634
"nucleus" evidence=IEA;IDA] [GO:0016567 "protein ubiquitination"
evidence=TAS] [GO:0019005 "SCF ubiquitin ligase complex"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA;IDA] [GO:0006511
"ubiquitin-dependent protein catabolic process" evidence=IEA]
InterPro:IPR001232 InterPro:IPR016072 InterPro:IPR016073
Pfam:PF01466 Pfam:PF03931 SMART:SM00512 dictyBase:DDB_G0269230
GO:GO:0005938 GO:GO:0005634 EMBL:AAFI02000005
GenomeReviews:CM000150_GR GO:GO:0016567 Gene3D:3.30.710.10
InterPro:IPR011333 SUPFAM:SSF54695 GO:GO:0030587 GO:GO:0006511
GO:GO:0019005 eggNOG:COG5201 KO:K03094 InterPro:IPR016897
PANTHER:PTHR11165 PIRSF:PIRSF028729 SUPFAM:SSF81382 EMBL:U18063
EMBL:U73685 PIR:A55969 RefSeq:XP_646453.1 ProteinModelPortal:P52285
SMR:P52285 IntAct:P52285 GlycoSuiteDB:P52285 PRIDE:P52285
EnsemblProtists:DDB0191107 GeneID:8617413 KEGG:ddi:DDB_G0269230
OMA:KNWDADF ProtClustDB:CLSZ2729221 Uniprot:P52285
Length = 162
Score = 90 (36.7 bits), Expect = 0.00026, P = 0.00026
Identities = 23/58 (39%), Positives = 35/58 (60%)
Query: 7 VKLISAEGFEFVISKEAAMVSQTIRNMLTSPGGFAETEHGEVTFPEISTTILEKICQY 64
VKL S++ F I KE A +S TI+NM+ G E++ + P +++TILEK+ Y
Sbjct: 4 VKLESSDEKVFEIEKEIACMSVTIKNMIEDIG---ESD-SPIPLPNVTSTILEKVLDY 57
>DICTYBASE|DDB_G0273615 [details] [associations]
symbol:fpaB-2 "ubiquitin ligase subunit SKP1"
species:44689 "Dictyostelium discoideum" [GO:0030587 "sorocarp
development" evidence=IMP] [GO:0005938 "cell cortex" evidence=IDA]
[GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0016567 "protein
ubiquitination" evidence=TAS] [GO:0019005 "SCF ubiquitin ligase
complex" evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA;IDA]
[GO:0006511 "ubiquitin-dependent protein catabolic process"
evidence=IEA] [GO:0044351 "macropinocytosis" evidence=RCA]
InterPro:IPR001232 InterPro:IPR016072 InterPro:IPR016073
Pfam:PF01466 Pfam:PF03931 SMART:SM00512 dictyBase:DDB_G0273615
dictyBase:DDB_G0273251 GO:GO:0005938 GO:GO:0005634
GenomeReviews:CM000151_GR GO:GO:0016567 Gene3D:3.30.710.10
InterPro:IPR011333 SUPFAM:SSF54695 GO:GO:0030587 EMBL:AAFI02000011
EMBL:AAFI02000009 GO:GO:0006511 GO:GO:0019005 HSSP:P63208
eggNOG:COG5201 KO:K03094 InterPro:IPR016897 PANTHER:PTHR11165
PIRSF:PIRSF028729 SUPFAM:SSF81382 PIR:A55969
ProtClustDB:CLSZ2729221 EMBL:U73686 RefSeq:XP_644424.1
RefSeq:XP_644826.1 ProteinModelPortal:Q557E4 SMR:Q557E4
PRIDE:Q557E4 EnsemblProtists:DDB0185043 EnsemblProtists:DDB0266780
GeneID:8618928 GeneID:8619049 KEGG:ddi:DDB_G0273251
KEGG:ddi:DDB_G0273615 OMA:VIQWCTY Uniprot:Q557E4
Length = 162
Score = 90 (36.7 bits), Expect = 0.00026, P = 0.00026
Identities = 23/58 (39%), Positives = 35/58 (60%)
Query: 7 VKLISAEGFEFVISKEAAMVSQTIRNMLTSPGGFAETEHGEVTFPEISTTILEKICQY 64
VKL S++ F I KE A +S TI+NM+ G E++ + P +++TILEK+ Y
Sbjct: 4 VKLESSDEKVFEIEKEIACMSVTIKNMIEDIG---ESD-APIPLPNVTSTILEKVLDY 57
>DICTYBASE|DDB_G0273251 [details] [associations]
symbol:fpaB-1 "ubiquitin ligase subunit SKP1"
species:44689 "Dictyostelium discoideum" [GO:0030587 "sorocarp
development" evidence=IMP] [GO:0005938 "cell cortex" evidence=IDA]
[GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0016567 "protein
ubiquitination" evidence=TAS] [GO:0019005 "SCF ubiquitin ligase
complex" evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA;IDA]
[GO:0006511 "ubiquitin-dependent protein catabolic process"
evidence=IEA] [GO:0044351 "macropinocytosis" evidence=RCA]
InterPro:IPR001232 InterPro:IPR016072 InterPro:IPR016073
Pfam:PF01466 Pfam:PF03931 SMART:SM00512 dictyBase:DDB_G0273615
dictyBase:DDB_G0273251 GO:GO:0005938 GO:GO:0005634
GenomeReviews:CM000151_GR GO:GO:0016567 Gene3D:3.30.710.10
InterPro:IPR011333 SUPFAM:SSF54695 GO:GO:0030587 EMBL:AAFI02000011
EMBL:AAFI02000009 GO:GO:0006511 GO:GO:0019005 HSSP:P63208
eggNOG:COG5201 KO:K03094 InterPro:IPR016897 PANTHER:PTHR11165
PIRSF:PIRSF028729 SUPFAM:SSF81382 PIR:A55969
ProtClustDB:CLSZ2729221 EMBL:U73686 RefSeq:XP_644424.1
RefSeq:XP_644826.1 ProteinModelPortal:Q557E4 SMR:Q557E4
PRIDE:Q557E4 EnsemblProtists:DDB0185043 EnsemblProtists:DDB0266780
GeneID:8618928 GeneID:8619049 KEGG:ddi:DDB_G0273251
KEGG:ddi:DDB_G0273615 OMA:VIQWCTY Uniprot:Q557E4
Length = 162
Score = 90 (36.7 bits), Expect = 0.00026, P = 0.00026
Identities = 23/58 (39%), Positives = 35/58 (60%)
Query: 7 VKLISAEGFEFVISKEAAMVSQTIRNMLTSPGGFAETEHGEVTFPEISTTILEKICQY 64
VKL S++ F I KE A +S TI+NM+ G E++ + P +++TILEK+ Y
Sbjct: 4 VKLESSDEKVFEIEKEIACMSVTIKNMIEDIG---ESD-APIPLPNVTSTILEKVLDY 57
>ZFIN|ZDB-GENE-040426-1707 [details] [associations]
symbol:skp1 "S-phase kinase-associated protein 1"
species:7955 "Danio rerio" [GO:0006511 "ubiquitin-dependent protein
catabolic process" evidence=IEA] [GO:0016310 "phosphorylation"
evidence=IEA] [GO:0016301 "kinase activity" evidence=IEA]
InterPro:IPR001232 InterPro:IPR016072 InterPro:IPR016073
Pfam:PF01466 Pfam:PF03931 SMART:SM00512 ZFIN:ZDB-GENE-040426-1707
Gene3D:3.30.710.10 InterPro:IPR011333 SUPFAM:SSF54695 GO:GO:0016301
GO:GO:0006511 eggNOG:COG5201 HOGENOM:HOG000172184 KO:K03094
InterPro:IPR016897 PANTHER:PTHR11165 PIRSF:PIRSF028729
SUPFAM:SSF81382 OMA:KNWDADF CTD:6500 GeneTree:ENSGT00390000012652
HOVERGEN:HBG057008 OrthoDB:EOG498V26 EMBL:FP017197 EMBL:BC059536
EMBL:AY648843 IPI:IPI00501108 RefSeq:NP_957037.1 UniGene:Dr.83245
SMR:Q6PBY8 STRING:Q6PBY8 Ensembl:ENSDART00000008454 GeneID:393716
KEGG:dre:393716 InParanoid:Q6PBY8 NextBio:20814718 Uniprot:Q6PBY8
Length = 163
Score = 87 (35.7 bits), Expect = 0.00060, P = 0.00060
Identities = 21/59 (35%), Positives = 32/59 (54%)
Query: 6 TVKLISAEGFEFVISKEAAMVSQTIRNMLTSPGGFAETEHGEVTFPEISTTILEKICQY 64
T+KL S++G F + E A S TI+ ML G E + V P ++ IL+K+ Q+
Sbjct: 3 TIKLQSSDGEMFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQW 61
>UNIPROTKB|E5RJ89 [details] [associations]
symbol:TCEB1 "Transcription elongation factor B polypeptide
1" species:9606 "Homo sapiens" [GO:0006511 "ubiquitin-dependent
protein catabolic process" evidence=IEA] InterPro:IPR016073
Pfam:PF03931 Gene3D:3.30.710.10 InterPro:IPR011333 SUPFAM:SSF54695
GO:GO:0006511 EMBL:AC022868 HGNC:HGNC:11617 ChiTaRS:TCEB1
IPI:IPI00973924 ProteinModelPortal:E5RJ89 SMR:E5RJ89
Ensembl:ENST00000519021 ArrayExpress:E5RJ89 Bgee:E5RJ89
Uniprot:E5RJ89
Length = 99
Score = 85 (35.0 bits), Expect = 0.00073, P = 0.00072
Identities = 16/31 (51%), Positives = 24/31 (77%)
Query: 7 VKLISAEGFEFVISKEAAMVSQTIRNMLTSP 37
VKLIS++G EF++ +E A+ S TI+ ML+ P
Sbjct: 19 VKLISSDGHEFIVKREHALTSGTIKAMLSGP 49
>MGI|MGI:103575 [details] [associations]
symbol:Skp1a "S-phase kinase-associated protein 1A"
species:10090 "Mus musculus" [GO:0004842 "ubiquitin-protein ligase
activity" evidence=ISO;IC] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005829 "cytosol" evidence=IDA] [GO:0006511
"ubiquitin-dependent protein catabolic process" evidence=IC]
[GO:0016301 "kinase activity" evidence=IEA] [GO:0016310
"phosphorylation" evidence=IEA] [GO:0016567 "protein
ubiquitination" evidence=ISO;IC] [GO:0019005 "SCF ubiquitin ligase
complex" evidence=ISO;IDA] [GO:0031146 "SCF-dependent proteasomal
ubiquitin-dependent protein catabolic process" evidence=ISO;IDA]
[GO:0035518 "histone H2A monoubiquitination" evidence=ISO]
InterPro:IPR001232 InterPro:IPR016072 InterPro:IPR016073
Pfam:PF01466 Pfam:PF03931 SMART:SM00512 UniPathway:UPA00143
MGI:MGI:103575 GO:GO:0005829 Gene3D:3.30.710.10 InterPro:IPR011333
SUPFAM:SSF54695 GO:GO:0019005 GO:GO:0004842 eggNOG:COG5201
HOGENOM:HOG000172184 KO:K03094 InterPro:IPR016897 PANTHER:PTHR11165
PIRSF:PIRSF028729 SUPFAM:SSF81382 GO:GO:0035518 GO:GO:0031519
GO:GO:0031146 OMA:VIQWCTY GeneTree:ENSGT00390000012652
HOVERGEN:HBG057008 OrthoDB:EOG498V26 ChiTaRS:SKP1 EMBL:AF083214
EMBL:AK002983 EMBL:AK010628 EMBL:AK012498 EMBL:AK014245
EMBL:AK027909 EMBL:AK078330 EMBL:AK088339 EMBL:BC002115
IPI:IPI00331163 RefSeq:NP_035673.3 UniGene:Mm.42944
ProteinModelPortal:Q9WTX5 SMR:Q9WTX5 IntAct:Q9WTX5 STRING:Q9WTX5
PhosphoSite:Q9WTX5 REPRODUCTION-2DPAGE:Q9WTX5 PaxDb:Q9WTX5
PRIDE:Q9WTX5 Ensembl:ENSMUST00000037324 Ensembl:ENSMUST00000109072
GeneID:21402 KEGG:mmu:21402 CTD:21402 InParanoid:Q9WTX5
NextBio:300668 Bgee:Q9WTX5 CleanEx:MM_SKP1A Genevestigator:Q9WTX5
GermOnline:ENSMUSG00000036309 Uniprot:Q9WTX5
Length = 163
Score = 86 (35.3 bits), Expect = 0.00078, P = 0.00078
Identities = 21/59 (35%), Positives = 32/59 (54%)
Query: 6 TVKLISAEGFEFVISKEAAMVSQTIRNMLTSPGGFAETEHGEVTFPEISTTILEKICQY 64
T+KL S++G F + E A S TI+ ML G E + V P ++ IL+K+ Q+
Sbjct: 3 TIKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQW 61
>RGD|1359648 [details] [associations]
symbol:Skp1 "S-phase kinase-associated protein 1" species:10116
"Rattus norvegicus" [GO:0004842 "ubiquitin-protein ligase activity"
evidence=IEA;ISO] [GO:0005829 "cytosol" evidence=ISO;ISS]
[GO:0006511 "ubiquitin-dependent protein catabolic process"
evidence=IEA] [GO:0016567 "protein ubiquitination" evidence=ISO]
[GO:0019005 "SCF ubiquitin ligase complex" evidence=ISO;ISS]
[GO:0031146 "SCF-dependent proteasomal ubiquitin-dependent protein
catabolic process" evidence=ISO;ISS] [GO:0031519 "PcG protein
complex" evidence=IEA;ISO] [GO:0035518 "histone H2A
monoubiquitination" evidence=IEA;ISO] InterPro:IPR001232
InterPro:IPR016072 InterPro:IPR016073 Pfam:PF01466 Pfam:PF03931
SMART:SM00512 UniPathway:UPA00143 RGD:1359648 GO:GO:0005829
Gene3D:3.30.710.10 InterPro:IPR011333 SUPFAM:SSF54695 GO:GO:0019005
GO:GO:0004842 eggNOG:COG5201 HOGENOM:HOG000172184 KO:K03094
InterPro:IPR016897 PANTHER:PTHR11165 PIRSF:PIRSF028729
SUPFAM:SSF81382 GO:GO:0035518 GO:GO:0031519 GO:GO:0031146
OMA:VIQWCTY CTD:6500 GeneTree:ENSGT00390000012652
HOVERGEN:HBG057008 OrthoDB:EOG498V26 EMBL:BC058152 IPI:IPI00369350
RefSeq:NP_001007609.1 UniGene:Rn.3477 ProteinModelPortal:Q6PEC4
SMR:Q6PEC4 DIP:DIP-29863N IntAct:Q6PEC4 STRING:Q6PEC4
PhosphoSite:Q6PEC4 PRIDE:Q6PEC4 Ensembl:ENSRNOT00000007676
GeneID:287280 KEGG:rno:287280 UCSC:RGD:1359648 InParanoid:Q6PEC4
NextBio:625795 ArrayExpress:Q6PEC4 Genevestigator:Q6PEC4
GermOnline:ENSRNOG00000005828 Uniprot:Q6PEC4
Length = 163
Score = 86 (35.3 bits), Expect = 0.00078, P = 0.00078
Identities = 21/59 (35%), Positives = 32/59 (54%)
Query: 6 TVKLISAEGFEFVISKEAAMVSQTIRNMLTSPGGFAETEHGEVTFPEISTTILEKICQY 64
T+KL S++G F + E A S TI+ ML G E + V P ++ IL+K+ Q+
Sbjct: 3 TIKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQW 61
>FB|FBgn0026175 [details] [associations]
symbol:skpC "skpC" species:7227 "Drosophila melanogaster"
[GO:0006511 "ubiquitin-dependent protein catabolic process"
evidence=IEA] InterPro:IPR001232 InterPro:IPR016072
InterPro:IPR016073 Pfam:PF01466 Pfam:PF03931 SMART:SM00512
EMBL:AE014298 Gene3D:3.30.710.10 InterPro:IPR011333 SUPFAM:SSF54695
GO:GO:0006511 eggNOG:COG5201 KO:K03094 InterPro:IPR016897
PANTHER:PTHR11165 PIRSF:PIRSF028729 SUPFAM:SSF81382
GeneTree:ENSGT00390000012652 HSSP:P34991 OrthoDB:EOG4K6DMM
EMBL:AF220068 EMBL:BT120007 RefSeq:NP_608358.1 UniGene:Dm.26675
SMR:Q9VWC4 IntAct:Q9VWC4 MINT:MINT-763311 STRING:Q9VWC4
EnsemblMetazoa:FBtr0074797 GeneID:32996 KEGG:dme:Dmel_CG11941
UCSC:CG11941-RA CTD:32996 FlyBase:FBgn0026175 InParanoid:Q9VWC4
OMA:HMIEESS GenomeRNAi:32996 NextBio:781428 Uniprot:Q9VWC4
Length = 158
Score = 85 (35.0 bits), Expect = 0.00091, P = 0.00091
Identities = 21/61 (34%), Positives = 32/61 (52%)
Query: 6 TVKLISAEGFEFVISKEAAMVSQTIRNMLTSPGGFAETEHGEVTFPEISTTILEKICQYF 65
T+KL S++G F AA +S+TI+ ML E+ V P+++ IL KI +
Sbjct: 5 TIKLESSDGMIFSTEVRAAKLSETIKTML-EVSAVENDENAIVPLPKVNAFILSKILTWI 63
Query: 66 Y 66
Y
Sbjct: 64 Y 64
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.317 0.130 0.370 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 72 72 0.00091 102 3 11 22 0.49 28
29 0.43 29
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 31
No. of states in DFA: 499 (53 KB)
Total size of DFA: 92 KB (2068 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 8.51u 0.11s 8.62t Elapsed: 00:00:00
Total cpu time: 8.51u 0.11s 8.62t Elapsed: 00:00:00
Start: Mon May 20 23:42:12 2013 End: Mon May 20 23:42:12 2013