BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040934
(72 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P83941|ELOC_RAT Transcription elongation factor B polypeptide 1 OS=Rattus
norvegicus GN=Tceb1 PE=1 SV=1
Length = 112
Score = 73.9 bits (180), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 32/66 (48%), Positives = 47/66 (71%)
Query: 7 VKLISAEGFEFVISKEAAMVSQTIRNMLTSPGGFAETEHGEVTFPEISTTILEKICQYFY 66
VKLIS++G EF++ +E A+ S TI+ ML+ PG FAE E EV F EI + +L K+C YF
Sbjct: 19 VKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFT 78
Query: 67 WSLQYS 72
+ ++Y+
Sbjct: 79 YKVRYT 84
>sp|P83940|ELOC_MOUSE Transcription elongation factor B polypeptide 1 OS=Mus musculus
GN=Tceb1 PE=1 SV=1
Length = 112
Score = 73.9 bits (180), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 32/66 (48%), Positives = 47/66 (71%)
Query: 7 VKLISAEGFEFVISKEAAMVSQTIRNMLTSPGGFAETEHGEVTFPEISTTILEKICQYFY 66
VKLIS++G EF++ +E A+ S TI+ ML+ PG FAE E EV F EI + +L K+C YF
Sbjct: 19 VKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFT 78
Query: 67 WSLQYS 72
+ ++Y+
Sbjct: 79 YKVRYT 84
>sp|Q15369|ELOC_HUMAN Transcription elongation factor B polypeptide 1 OS=Homo sapiens
GN=TCEB1 PE=1 SV=1
Length = 112
Score = 73.9 bits (180), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 32/66 (48%), Positives = 47/66 (71%)
Query: 7 VKLISAEGFEFVISKEAAMVSQTIRNMLTSPGGFAETEHGEVTFPEISTTILEKICQYFY 66
VKLIS++G EF++ +E A+ S TI+ ML+ PG FAE E EV F EI + +L K+C YF
Sbjct: 19 VKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFT 78
Query: 67 WSLQYS 72
+ ++Y+
Sbjct: 79 YKVRYT 84
>sp|Q2KII4|ELOC_BOVIN Transcription elongation factor B polypeptide 1 OS=Bos taurus
GN=TCEB1 PE=3 SV=1
Length = 112
Score = 73.9 bits (180), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 32/66 (48%), Positives = 47/66 (71%)
Query: 7 VKLISAEGFEFVISKEAAMVSQTIRNMLTSPGGFAETEHGEVTFPEISTTILEKICQYFY 66
VKLIS++G EF++ +E A+ S TI+ ML+ PG FAE E EV F EI + +L K+C YF
Sbjct: 19 VKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFT 78
Query: 67 WSLQYS 72
+ ++Y+
Sbjct: 79 YKVRYT 84
>sp|Q9USX9|ELOC_SCHPO Elongin-C OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=elc1 PE=3 SV=1
Length = 97
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/72 (45%), Positives = 50/72 (69%), Gaps = 2/72 (2%)
Query: 1 MKKEDTVKLISAEGFEFVISKEAAMVSQTIRNMLTSPGGFAETEHGEVTFPEISTTILEK 60
M+KE V+LIS +GF F++ KE A +S TIR +L G F+E + E TFP+I T+LEK
Sbjct: 1 MEKE-YVRLISGDGFVFILEKEIACLSGTIRAILNE-GIFSEAQKNECTFPDIRATLLEK 58
Query: 61 ICQYFYWSLQYS 72
+C+Y +++ +Y
Sbjct: 59 VCEYLHYNYRYK 70
>sp|Q54Q05|ELOC_DICDI Transcription elongation factor B polypeptide 1 OS=Dictyostelium
discoideum GN=tceb1 PE=3 SV=1
Length = 109
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 48/69 (69%), Gaps = 1/69 (1%)
Query: 5 DTVKLISAEGFEFVISKEAAMVSQTIRNMLTSPG-GFAETEHGEVTFPEISTTILEKICQ 63
D ++L S+ G EFV+S++ + VS TI++ML+ F E ++ E+ F EIST +LEK+ Q
Sbjct: 13 DVLRLYSSTGHEFVLSRKMSYVSGTIKSMLSGDNSNFMEDQNNEIRFREISTPVLEKVIQ 72
Query: 64 YFYWSLQYS 72
YFY+ +Y+
Sbjct: 73 YFYFKNKYT 81
>sp|Q751F9|ELOC_ASHGO Elongin-C OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 /
FGSC 9923 / NRRL Y-1056) GN=ELC1 PE=3 SV=1
Length = 100
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 40/65 (61%), Gaps = 2/65 (3%)
Query: 7 VKLISAEGFEFVISKEAAMVSQTIRNMLTSPGGFAETEHGEVTFPEISTTILEKICQYFY 66
V L+S++G F + +E AM+S T+ ML S FAE + +VT P I +++L K+ +Y
Sbjct: 7 VTLVSSDGKSFEVPRERAMLSPTLAKMLDS--SFAEAKEAKVTLPTIESSMLAKVVEYLE 64
Query: 67 WSLQY 71
+ +Y
Sbjct: 65 YLEEY 69
>sp|Q03071|ELOC_YEAST Elongin-C OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=ELC1 PE=1 SV=1
Length = 99
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 43/69 (62%), Gaps = 3/69 (4%)
Query: 4 EDTVKLISAEGFEFVISKEAAMVSQTIRNMLTSPGGFAETEHGEVTFPEISTTILEKICQ 63
+D V L+S + E+ IS+ AAM+S T++ M+ P F E++ G + + + ILEK +
Sbjct: 3 QDFVTLVSKDDKEYEISRSAAMISPTLKAMIEGP--FRESK-GRIELKQFDSHILEKAVE 59
Query: 64 YFYWSLQYS 72
Y ++L+YS
Sbjct: 60 YLNYNLKYS 68
>sp|Q6PEC4|SKP1_RAT S-phase kinase-associated protein 1 OS=Rattus norvegicus GN=Skp1
PE=2 SV=3
Length = 163
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 32/59 (54%)
Query: 6 TVKLISAEGFEFVISKEAAMVSQTIRNMLTSPGGFAETEHGEVTFPEISTTILEKICQY 64
T+KL S++G F + E A S TI+ ML G E + V P ++ IL+K+ Q+
Sbjct: 3 TIKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQW 61
>sp|Q9WTX5|SKP1_MOUSE S-phase kinase-associated protein 1 OS=Mus musculus GN=Skp1 PE=1
SV=3
Length = 163
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 32/59 (54%)
Query: 6 TVKLISAEGFEFVISKEAAMVSQTIRNMLTSPGGFAETEHGEVTFPEISTTILEKICQY 64
T+KL S++G F + E A S TI+ ML G E + V P ++ IL+K+ Q+
Sbjct: 3 TIKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQW 61
>sp|Q557E4|SKP1B_DICDI SCF ubiquitin ligase complex protein SKP1b OS=Dictyostelium
discoideum GN=fpaB-1 PE=1 SV=1
Length = 162
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 34/65 (52%), Gaps = 4/65 (6%)
Query: 7 VKLISAEGFEFVISKEAAMVSQTIRNMLTSPGGFAETEHGEVTFPEISTTILEKICQYFY 66
VKL S++ F I KE A +S TI+NM+ G + P +++TILEK+ Y
Sbjct: 4 VKLESSDEKVFEIEKEIACMSVTIKNMIEDIG----ESDAPIPLPNVTSTILEKVLDYCR 59
Query: 67 WSLQY 71
Q+
Sbjct: 60 HHHQH 64
>sp|P52285|SKP1A_DICDI SCF ubiquitin ligase complex protein SKP1a OS=Dictyostelium
discoideum GN=fpaA PE=1 SV=1
Length = 162
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 34/65 (52%), Gaps = 4/65 (6%)
Query: 7 VKLISAEGFEFVISKEAAMVSQTIRNMLTSPGGFAETEHGEVTFPEISTTILEKICQYFY 66
VKL S++ F I KE A +S TI+NM+ G + P +++TILEK+ Y
Sbjct: 4 VKLESSDEKVFEIEKEIACMSVTIKNMIEDIG----ESDSPIPLPNVTSTILEKVLDYCR 59
Query: 67 WSLQY 71
Q+
Sbjct: 60 HHHQH 64
>sp|Q71U00|SKP1_XENLA S-phase kinase-associated protein 1 OS=Xenopus laevis GN=skp1
PE=1 SV=3
Length = 163
Score = 37.4 bits (85), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 32/59 (54%)
Query: 6 TVKLISAEGFEFVISKEAAMVSQTIRNMLTSPGGFAETEHGEVTFPEISTTILEKICQY 64
++KL S++G F + E A S TI+ ML G E + V P ++ IL+K+ Q+
Sbjct: 3 SIKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQW 61
>sp|Q5R512|SKP1_PONAB S-phase kinase-associated protein 1 OS=Pongo abelii GN=SKP1 PE=2
SV=1
Length = 163
Score = 37.4 bits (85), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 32/59 (54%)
Query: 6 TVKLISAEGFEFVISKEAAMVSQTIRNMLTSPGGFAETEHGEVTFPEISTTILEKICQY 64
++KL S++G F + E A S TI+ ML G E + V P ++ IL+K+ Q+
Sbjct: 3 SIKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQW 61
>sp|Q4R5B9|SKP1_MACFA S-phase kinase-associated protein 1 OS=Macaca fascicularis
GN=SKP1 PE=2 SV=1
Length = 163
Score = 37.4 bits (85), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 32/59 (54%)
Query: 6 TVKLISAEGFEFVISKEAAMVSQTIRNMLTSPGGFAETEHGEVTFPEISTTILEKICQY 64
++KL S++G F + E A S TI+ ML G E + V P ++ IL+K+ Q+
Sbjct: 3 SIKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQW 61
>sp|P63208|SKP1_HUMAN S-phase kinase-associated protein 1 OS=Homo sapiens GN=SKP1 PE=1
SV=2
Length = 163
Score = 37.4 bits (85), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 32/59 (54%)
Query: 6 TVKLISAEGFEFVISKEAAMVSQTIRNMLTSPGGFAETEHGEVTFPEISTTILEKICQY 64
++KL S++G F + E A S TI+ ML G E + V P ++ IL+K+ Q+
Sbjct: 3 SIKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQW 61
>sp|Q5ZKF5|SKP1_CHICK S-phase kinase-associated protein 1 OS=Gallus gallus GN=SKP1 PE=2
SV=1
Length = 163
Score = 37.4 bits (85), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 32/59 (54%)
Query: 6 TVKLISAEGFEFVISKEAAMVSQTIRNMLTSPGGFAETEHGEVTFPEISTTILEKICQY 64
++KL S++G F + E A S TI+ ML G E + V P ++ IL+K+ Q+
Sbjct: 3 SIKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQW 61
>sp|P63209|SKP1_CAVPO S-phase kinase-associated protein 1 OS=Cavia porcellus GN=SKP1
PE=2 SV=2
Length = 163
Score = 37.4 bits (85), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 32/59 (54%)
Query: 6 TVKLISAEGFEFVISKEAAMVSQTIRNMLTSPGGFAETEHGEVTFPEISTTILEKICQY 64
++KL S++G F + E A S TI+ ML G E + V P ++ IL+K+ Q+
Sbjct: 3 SIKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQW 61
>sp|Q3ZCF3|SKP1_BOVIN S-phase kinase-associated protein 1 OS=Bos taurus GN=SKP1 PE=2
SV=1
Length = 163
Score = 37.4 bits (85), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 32/59 (54%)
Query: 6 TVKLISAEGFEFVISKEAAMVSQTIRNMLTSPGGFAETEHGEVTFPEISTTILEKICQY 64
++KL S++G F + E A S TI+ ML G E + V P ++ IL+K+ Q+
Sbjct: 3 SIKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQW 61
>sp|Q9Y709|SKP1_SCHPO Suppressor of kinetochore protein 1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=skp1 PE=1 SV=1
Length = 161
Score = 36.2 bits (82), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 4/58 (6%)
Query: 7 VKLISAEGFEFVISKEAAMVSQTIRNMLTSPGGFAETEHGEVTFPEISTTILEKICQY 64
+KLIS++ EFV+ + A S I+NML G + + P +S+ +L K+ ++
Sbjct: 4 IKLISSDNEEFVVDQLIAERSMLIKNMLEDVGEI----NVPIPLPNVSSNVLRKVLEW 57
>sp|Q9LSX8|ASK10_ARATH SKP1-like protein 10 OS=Arabidopsis thaliana GN=ASK10 PE=1 SV=1
Length = 152
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 5/56 (8%)
Query: 9 LISAEGFEFVISKEAAMVSQTIRNMLTSPGGFAETEHGEVTFPEISTTILEKICQY 64
L S++G F + +EAA QTI +M T++G + PE++ ILE + +Y
Sbjct: 8 LKSSDGHSFEVEEEAACQCQTIAHMSEDDC----TDNG-IPLPEVTGKILEMVIEY 58
>sp|Q68EH8|FAD1_DANRE FAD synthase OS=Danio rerio GN=flad1 PE=2 SV=1
Length = 497
Score = 29.6 bits (65), Expect = 5.7, Method: Composition-based stats.
Identities = 16/44 (36%), Positives = 28/44 (63%), Gaps = 2/44 (4%)
Query: 18 VISKEAAMVSQTIRNMLTSPGGFAETEHGEVTFPEISTTILEKI 61
VI+KE + +S T+ +++TS GG T H +VTF ++ E++
Sbjct: 63 VIAKEVSQLSSTVTHLITS-GGIGPT-HDDVTFESVAMAFGEEL 104
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.130 0.370
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,200,451
Number of Sequences: 539616
Number of extensions: 673412
Number of successful extensions: 1957
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1936
Number of HSP's gapped (non-prelim): 22
length of query: 72
length of database: 191,569,459
effective HSP length: 44
effective length of query: 28
effective length of database: 167,826,355
effective search space: 4699137940
effective search space used: 4699137940
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)