BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040935
(139 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 70.9 bits (172), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 52/129 (40%), Positives = 68/129 (52%)
Query: 1 MNNIPRSIPLEIGDLSKLQVLDLSSNHIVGEIRVQLGKLFSLNKLILNMNQLYGGMPLKL 60
N + +IP +G LSKL+ L L N + GEI +L + +L LIL+ N L G +P L
Sbjct: 427 FNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGL 486
Query: 61 DSLTKLQYLDLSANKLWSLILENIDNLLKLCYLNLSNNQFIQKIPIELEKLIPLSELDLN 120
+ T L ++ LS N+L I + I L L L LSNN F IP EL L LDLN
Sbjct: 487 SNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLN 546
Query: 121 YNFLDVEIP 129
N + IP
Sbjct: 547 TNLFNGTIP 555
Score = 56.2 bits (134), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 69/137 (50%)
Query: 2 NNIPRSIPLEIGDLSKLQVLDLSSNHIVGEIRVQLGKLFSLNKLILNMNQLYGGMPLKLD 61
N IP + + S+L L LS N++ G I LG L L L L +N L G +P +L
Sbjct: 404 NGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELM 463
Query: 62 SLTKLQYLDLSANKLWSLILENIDNLLKLCYLNLSNNQFIQKIPIELEKLIPLSELDLNY 121
+ L+ L L N L I + N L +++LSNN+ +IP + +L L+ L L+
Sbjct: 464 YVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSN 523
Query: 122 NFLDVEIPFQICNMKSL 138
N IP ++ + +SL
Sbjct: 524 NSFSGNIPAELGDCRSL 540
Score = 48.9 bits (115), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 43/75 (57%)
Query: 8 IPLEIGDLSKLQVLDLSSNHIVGEIRVQLGKLFSLNKLILNMNQLYGGMPLKLDSLTKLQ 67
IP EIG + L +L+L N I G I ++G L LN L L+ N+L G +P + +LT L
Sbjct: 648 IPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLT 707
Query: 68 YLDLSANKLWSLILE 82
+DLS N L I E
Sbjct: 708 EIDLSNNNLSGPIPE 722
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 49/105 (46%), Gaps = 4/105 (3%)
Query: 2 NNIPRSIPLEIGDLSKLQVLDLSSNHIVGEIRVQLGKLFSLNKLILNMNQLYGGMPLKLD 61
NN IP +GD S LQ LD+S N + G+ + L L ++ NQ G P+
Sbjct: 210 NNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVG--PIPPL 266
Query: 62 SLTKLQYLDLSANKLWSLILENIDNLL-KLCYLNLSNNQFIQKIP 105
L LQYL L+ NK I + + L L+LS N F +P
Sbjct: 267 PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVP 311
Score = 47.0 bits (110), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 56/114 (49%), Gaps = 5/114 (4%)
Query: 16 SKLQVLDLSSNHIVGEIRVQLGKLFSLNKLILNMNQLYGGMPLKLDSLTKLQYLDLSANK 75
+L+ L +S N I G++ V + +L L ++ N G+P L + LQ+LD+S NK
Sbjct: 178 GELKHLAISGNKISGDVDVS--RCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNK 234
Query: 76 LWSLILENIDNLLKLCYLNLSNNQFIQKIPIELEKLIPLSELDLNYNFLDVEIP 129
L I +L LN+S+NQF+ IP L L L L N EIP
Sbjct: 235 LSGDFSRAISTCTELKLLNISSNQFVGPIPP--LPLKSLQYLSLAENKFTGEIP 286
Score = 43.5 bits (101), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 46/90 (51%)
Query: 16 SKLQVLDLSSNHIVGEIRVQLGKLFSLNKLILNMNQLYGGMPLKLDSLTKLQYLDLSANK 75
+ LD+S N + G I ++G + L L L N + G +P ++ L L LDLS+NK
Sbjct: 632 GSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNK 691
Query: 76 LWSLILENIDNLLKLCYLNLSNNQFIQKIP 105
L I + + L L ++LSNN IP
Sbjct: 692 LDGRIPQAMSALTMLTEIDLSNNNLSGPIP 721
Score = 43.5 bits (101), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 34/56 (60%)
Query: 2 NNIPRSIPLEIGDLSKLQVLDLSSNHIVGEIRVQLGKLFSLNKLILNMNQLYGGMP 57
N+I SIP E+GDL L +LDLSSN + G I + L L ++ L+ N L G +P
Sbjct: 666 NDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP 721
Score = 43.1 bits (100), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 48/141 (34%), Positives = 68/141 (48%), Gaps = 3/141 (2%)
Query: 1 MNNIPRSIPLEIGDLS-KLQVLDLSSNHIVGEIRVQLGK--LFSLNKLILNMNQLYGGMP 57
N +P + +LS L LDLSSN+ G I L + +L +L L N G +P
Sbjct: 352 FNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIP 411
Query: 58 LKLDSLTKLQYLDLSANKLWSLILENIDNLLKLCYLNLSNNQFIQKIPIELEKLIPLSEL 117
L + ++L L LS N L I ++ +L KL L L N +IP EL + L L
Sbjct: 412 PTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETL 471
Query: 118 DLNYNFLDVEIPFQICNMKSL 138
L++N L EIP + N +L
Sbjct: 472 ILDFNDLTGEIPSGLSNCTNL 492
Score = 40.8 bits (94), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 70/174 (40%), Gaps = 46/174 (26%)
Query: 2 NNIPRSIPLEIGDLSKLQVLDLSSNHIVGEIRV----QLGKLFS---------------- 41
N+ +IP E+GD L LDL++N G I Q GK+ +
Sbjct: 524 NSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGM 583
Query: 42 --------------------LNKLILN-----MNQLYGG-MPLKLDSLTKLQYLDLSANK 75
LN+L +++YGG D+ + +LD+S N
Sbjct: 584 KKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNM 643
Query: 76 LWSLILENIDNLLKLCYLNLSNNQFIQKIPIELEKLIPLSELDLNYNFLDVEIP 129
L I + I ++ L LNL +N IP E+ L L+ LDL+ N LD IP
Sbjct: 644 LSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIP 697
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 56/115 (48%)
Query: 15 LSKLQVLDLSSNHIVGEIRVQLGKLFSLNKLILNMNQLYGGMPLKLDSLTKLQYLDLSAN 74
LS +++S G S+ L ++ N L G +P ++ S+ L L+L N
Sbjct: 607 LSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHN 666
Query: 75 KLWSLILENIDNLLKLCYLNLSNNQFIQKIPIELEKLIPLSELDLNYNFLDVEIP 129
+ I + + +L L L+LS+N+ +IP + L L+E+DL+ N L IP
Sbjct: 667 DISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP 721
Score = 35.0 bits (79), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 40/161 (24%), Positives = 61/161 (37%), Gaps = 26/161 (16%)
Query: 2 NNIPRSIPLEIGDLSKLQVLDLSSNHIVGEIRVQLGKLFSLNKLILNMNQLYGGMPLKLD 61
N + IP IG L L +L LS+N G I +LG SL L LN N G +P +
Sbjct: 500 NRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMF 559
Query: 62 SLTKLQYLDLSANKLWSLILENIDNLLKLCY------------------------LNLSN 97
+ + A K + I D + K C+ N+++
Sbjct: 560 KQSGKIAANFIAGKRYVYIKN--DGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITS 617
Query: 98 NQFIQKIPIELEKLIPLSELDLNYNFLDVEIPFQICNMKSL 138
+ + + LD++YN L IP +I +M L
Sbjct: 618 RVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYL 658
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 70.5 bits (171), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 52/129 (40%), Positives = 68/129 (52%)
Query: 1 MNNIPRSIPLEIGDLSKLQVLDLSSNHIVGEIRVQLGKLFSLNKLILNMNQLYGGMPLKL 60
N + +IP +G LSKL+ L L N + GEI +L + +L LIL+ N L G +P L
Sbjct: 424 FNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGL 483
Query: 61 DSLTKLQYLDLSANKLWSLILENIDNLLKLCYLNLSNNQFIQKIPIELEKLIPLSELDLN 120
+ T L ++ LS N+L I + I L L L LSNN F IP EL L LDLN
Sbjct: 484 SNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLN 543
Query: 121 YNFLDVEIP 129
N + IP
Sbjct: 544 TNLFNGTIP 552
Score = 56.2 bits (134), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 69/137 (50%)
Query: 2 NNIPRSIPLEIGDLSKLQVLDLSSNHIVGEIRVQLGKLFSLNKLILNMNQLYGGMPLKLD 61
N IP + + S+L L LS N++ G I LG L L L L +N L G +P +L
Sbjct: 401 NGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELM 460
Query: 62 SLTKLQYLDLSANKLWSLILENIDNLLKLCYLNLSNNQFIQKIPIELEKLIPLSELDLNY 121
+ L+ L L N L I + N L +++LSNN+ +IP + +L L+ L L+
Sbjct: 461 YVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSN 520
Query: 122 NFLDVEIPFQICNMKSL 138
N IP ++ + +SL
Sbjct: 521 NSFSGNIPAELGDCRSL 537
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 43/75 (57%)
Query: 8 IPLEIGDLSKLQVLDLSSNHIVGEIRVQLGKLFSLNKLILNMNQLYGGMPLKLDSLTKLQ 67
IP EIG + L +L+L N I G I ++G L LN L L+ N+L G +P + +LT L
Sbjct: 645 IPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLT 704
Query: 68 YLDLSANKLWSLILE 82
+DLS N L I E
Sbjct: 705 EIDLSNNNLSGPIPE 719
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 49/105 (46%), Gaps = 4/105 (3%)
Query: 2 NNIPRSIPLEIGDLSKLQVLDLSSNHIVGEIRVQLGKLFSLNKLILNMNQLYGGMPLKLD 61
NN IP +GD S LQ LD+S N + G+ + L L ++ NQ G P+
Sbjct: 207 NNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVG--PIPPL 263
Query: 62 SLTKLQYLDLSANKLWSLILENIDNLL-KLCYLNLSNNQFIQKIP 105
L LQYL L+ NK I + + L L+LS N F +P
Sbjct: 264 PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVP 308
Score = 47.0 bits (110), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 56/114 (49%), Gaps = 5/114 (4%)
Query: 16 SKLQVLDLSSNHIVGEIRVQLGKLFSLNKLILNMNQLYGGMPLKLDSLTKLQYLDLSANK 75
+L+ L +S N I G++ V + +L L ++ N G+P L + LQ+LD+S NK
Sbjct: 175 GELKHLAISGNKISGDVDVS--RCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNK 231
Query: 76 LWSLILENIDNLLKLCYLNLSNNQFIQKIPIELEKLIPLSELDLNYNFLDVEIP 129
L I +L LN+S+NQF+ IP L L L L N EIP
Sbjct: 232 LSGDFSRAISTCTELKLLNISSNQFVGPIPP--LPLKSLQYLSLAENKFTGEIP 283
Score = 43.5 bits (101), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 46/90 (51%)
Query: 16 SKLQVLDLSSNHIVGEIRVQLGKLFSLNKLILNMNQLYGGMPLKLDSLTKLQYLDLSANK 75
+ LD+S N + G I ++G + L L L N + G +P ++ L L LDLS+NK
Sbjct: 629 GSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNK 688
Query: 76 LWSLILENIDNLLKLCYLNLSNNQFIQKIP 105
L I + + L L ++LSNN IP
Sbjct: 689 LDGRIPQAMSALTMLTEIDLSNNNLSGPIP 718
Score = 43.1 bits (100), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 34/56 (60%)
Query: 2 NNIPRSIPLEIGDLSKLQVLDLSSNHIVGEIRVQLGKLFSLNKLILNMNQLYGGMP 57
N+I SIP E+GDL L +LDLSSN + G I + L L ++ L+ N L G +P
Sbjct: 663 NDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP 718
Score = 43.1 bits (100), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 48/141 (34%), Positives = 68/141 (48%), Gaps = 3/141 (2%)
Query: 1 MNNIPRSIPLEIGDLS-KLQVLDLSSNHIVGEIRVQLGK--LFSLNKLILNMNQLYGGMP 57
N +P + +LS L LDLSSN+ G I L + +L +L L N G +P
Sbjct: 349 FNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIP 408
Query: 58 LKLDSLTKLQYLDLSANKLWSLILENIDNLLKLCYLNLSNNQFIQKIPIELEKLIPLSEL 117
L + ++L L LS N L I ++ +L KL L L N +IP EL + L L
Sbjct: 409 PTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETL 468
Query: 118 DLNYNFLDVEIPFQICNMKSL 138
L++N L EIP + N +L
Sbjct: 469 ILDFNDLTGEIPSGLSNCTNL 489
Score = 40.8 bits (94), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 2/96 (2%)
Query: 35 QLGKLFSLNKLILNMNQLYGG-MPLKLDSLTKLQYLDLSANKLWSLILENIDNLLKLCYL 93
QL +L + N + +++YGG D+ + +LD+S N L I + I ++ L L
Sbjct: 600 QLNRLSTRNPCNI-TSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFIL 658
Query: 94 NLSNNQFIQKIPIELEKLIPLSELDLNYNFLDVEIP 129
NL +N IP E+ L L+ LDL+ N LD IP
Sbjct: 659 NLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIP 694
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 56/115 (48%)
Query: 15 LSKLQVLDLSSNHIVGEIRVQLGKLFSLNKLILNMNQLYGGMPLKLDSLTKLQYLDLSAN 74
LS +++S G S+ L ++ N L G +P ++ S+ L L+L N
Sbjct: 604 LSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHN 663
Query: 75 KLWSLILENIDNLLKLCYLNLSNNQFIQKIPIELEKLIPLSELDLNYNFLDVEIP 129
+ I + + +L L L+LS+N+ +IP + L L+E+DL+ N L IP
Sbjct: 664 DISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP 718
Score = 35.0 bits (79), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 40/161 (24%), Positives = 61/161 (37%), Gaps = 26/161 (16%)
Query: 2 NNIPRSIPLEIGDLSKLQVLDLSSNHIVGEIRVQLGKLFSLNKLILNMNQLYGGMPLKLD 61
N + IP IG L L +L LS+N G I +LG SL L LN N G +P +
Sbjct: 497 NRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMF 556
Query: 62 SLTKLQYLDLSANKLWSLILENIDNLLKLCY------------------------LNLSN 97
+ + A K + I D + K C+ N+++
Sbjct: 557 KQSGKIAANFIAGKRYVYIKN--DGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITS 614
Query: 98 NQFIQKIPIELEKLIPLSELDLNYNFLDVEIPFQICNMKSL 138
+ + + LD++YN L IP +I +M L
Sbjct: 615 RVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYL 655
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/90 (44%), Positives = 52/90 (57%), Gaps = 2/90 (2%)
Query: 36 LGKLFSLNKLILNMNQLYGGMPLKLDSLTKLQYLDLSANKLWSLILENIDNLLKLCYLNL 95
L +L +L LIL NQL D LT L+ L L N+L SL D L L YLNL
Sbjct: 81 LKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNL 140
Query: 96 SNNQFIQKIPIEL-EKLIPLSELDLNYNFL 124
++NQ +Q +P + +KL L+ELDL+YN L
Sbjct: 141 AHNQ-LQSLPKGVFDKLTNLTELDLSYNQL 169
Score = 37.0 bits (84), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 41/112 (36%), Positives = 57/112 (50%), Gaps = 2/112 (1%)
Query: 14 DLSKLQVLDLSSNHIVGEIRVQLGKLFSLNKLILNMNQLYGGMPLKLDSLTKLQYLDLSA 73
+L+ L L L+ N + KL +L +L+L NQL D LT L YL+L+
Sbjct: 83 ELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAH 142
Query: 74 NKLWSLILENIDNLLKLCYLNLSNNQFIQKIPIEL-EKLIPLSELDLNYNFL 124
N+L SL D L L L+LS NQ +Q +P + +KL L +L L N L
Sbjct: 143 NQLQSLPKGVFDKLTNLTELDLSYNQ-LQSLPEGVFDKLTQLKDLRLYQNQL 193
Score = 30.0 bits (66), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 45/93 (48%), Gaps = 2/93 (2%)
Query: 38 KLFSLNKLILNMNQLYGGMPLKLDSLTKLQYLDLSANKLWSLILENIDNLLKLCYLNLSN 97
KL +L L L NQL D LT L LDLS N+L SL D L +L L L
Sbjct: 131 KLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQ 190
Query: 98 NQFIQKIPIEL-EKLIPLSELDLNYNFLDVEIP 129
NQ ++ +P + ++L L + L+ N D P
Sbjct: 191 NQ-LKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 222
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 42.4 bits (98), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 44/124 (35%), Positives = 57/124 (45%), Gaps = 3/124 (2%)
Query: 1 MNNIPRSIPLEIGDLSKLQVLDLSSNHIVGEIRVQLGKLFSLNKLILNMNQLYGGMPLKL 60
+ +P I E+ +L L V D N + +L +L +L L+ NQL P
Sbjct: 73 LQTLPAGIFKELKNLETLWVTD---NKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVF 129
Query: 61 DSLTKLQYLDLSANKLWSLILENIDNLLKLCYLNLSNNQFIQKIPIELEKLIPLSELDLN 120
DSLTKL YL L N+L SL D L L L L NNQ + +KL L L L+
Sbjct: 130 DSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLD 189
Query: 121 YNFL 124
N L
Sbjct: 190 NNQL 193
Score = 32.0 bits (71), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 46/96 (47%), Gaps = 1/96 (1%)
Query: 6 RSIPLEIGD-LSKLQVLDLSSNHIVGEIRVQLGKLFSLNKLILNMNQLYGGMPLKLDSLT 64
+S+P + D L+KL L L N + + KL SL +L L NQL D LT
Sbjct: 122 KSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLT 181
Query: 65 KLQYLDLSANKLWSLILENIDNLLKLCYLNLSNNQF 100
+L+ L L N+L + D+L KL L L N +
Sbjct: 182 ELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPW 217
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 48/101 (47%), Gaps = 1/101 (0%)
Query: 1 MNNIPRSIPLEIGD-LSKLQVLDLSSNHIVGEIRVQLGKLFSLNKLILNMNQLYGGMPLK 59
NN S+PL + D L++L L L N + +L L +L LN NQL
Sbjct: 91 ANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGA 150
Query: 60 LDSLTKLQYLDLSANKLWSLILENIDNLLKLCYLNLSNNQF 100
D LT LQ L LS N+L S+ D L KL + L NQF
Sbjct: 151 FDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQF 191
Score = 39.7 bits (91), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 55/124 (44%), Gaps = 6/124 (4%)
Query: 1 MNNIPRSIPLEIGDLSKLQVLDLSSNHIVGEIRVQLGKLFSLNKLILNMNQLYGGMPLKL 60
++++P IP + + LDL S + L L L L+ NQL
Sbjct: 26 LDSVPSGIPADT------EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVF 79
Query: 61 DSLTKLQYLDLSANKLWSLILENIDNLLKLCYLNLSNNQFIQKIPIELEKLIPLSELDLN 120
D LT+L L L+ N+L SL L D+L +L L L NQ ++L L EL LN
Sbjct: 80 DDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLN 139
Query: 121 YNFL 124
N L
Sbjct: 140 TNQL 143
Score = 39.7 bits (91), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 47/92 (51%), Gaps = 1/92 (1%)
Query: 14 DLSKLQVLDLSSNHIVGEIRVQLGKLFSLNKLILNMNQLYGGMPLKLDSLTKLQYLDLSA 73
DL++L L L++N + L L+KL L NQL D LTKL+ L L+
Sbjct: 81 DLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNT 140
Query: 74 NKLWSLILENIDNLLKLCYLNLSNNQFIQKIP 105
N+L S+ D L L L+LS NQ +Q +P
Sbjct: 141 NQLQSIPAGAFDKLTNLQTLSLSTNQ-LQSVP 171
Score = 34.7 bits (78), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 43/112 (38%), Positives = 54/112 (48%), Gaps = 4/112 (3%)
Query: 15 LSKLQVLDLSSNHIVGEIRVQLGKLFSLNKLILNMNQLYGGMPLKL-DSLTKLQYLDLSA 73
L+KL L+L N + L L L L NQL +PL + D LT+L L L
Sbjct: 58 LTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQL-ASLPLGVFDHLTQLDKLYLGG 116
Query: 74 NKLWSLILENIDNLLKLCYLNLSNNQFIQKIPI-ELEKLIPLSELDLNYNFL 124
N+L SL D L KL L L+ NQ +Q IP +KL L L L+ N L
Sbjct: 117 NQLKSLPSGVFDRLTKLKELRLNTNQ-LQSIPAGAFDKLTNLQTLSLSTNQL 167
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 48/101 (47%), Gaps = 1/101 (0%)
Query: 1 MNNIPRSIPLEIGD-LSKLQVLDLSSNHIVGEIRVQLGKLFSLNKLILNMNQLYGGMPLK 59
NN S+PL + D L++L L L N + +L L +L LN NQL
Sbjct: 91 ANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGA 150
Query: 60 LDSLTKLQYLDLSANKLWSLILENIDNLLKLCYLNLSNNQF 100
D LT LQ L LS N+L S+ D L KL + L NQF
Sbjct: 151 FDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQF 191
Score = 40.0 bits (92), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 41/125 (32%), Positives = 60/125 (48%), Gaps = 8/125 (6%)
Query: 1 MNNIPRSIPLEIGDLSKLQVLDLSSNHIVGEIRVQLGKLFSLNKLILNMNQLYGGMPLKL 60
++++P IP + + LDL S + L L L L+ NQL
Sbjct: 26 LDSVPSGIPADT------EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVF 79
Query: 61 DSLTKLQYLDLSANKLWSLILENIDNLLKLCYLNLSNNQFIQKIPIEL-EKLIPLSELDL 119
D LT+L L L+ N+L SL L D+L +L L L NQ ++ +P + ++L L EL L
Sbjct: 80 DDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQ-LKSLPSGVFDRLTKLKELRL 138
Query: 120 NYNFL 124
N N L
Sbjct: 139 NTNQL 143
Score = 39.7 bits (91), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 47/92 (51%), Gaps = 1/92 (1%)
Query: 14 DLSKLQVLDLSSNHIVGEIRVQLGKLFSLNKLILNMNQLYGGMPLKLDSLTKLQYLDLSA 73
DL++L L L++N + L L+KL L NQL D LTKL+ L L+
Sbjct: 81 DLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNT 140
Query: 74 NKLWSLILENIDNLLKLCYLNLSNNQFIQKIP 105
N+L S+ D L L L+LS NQ +Q +P
Sbjct: 141 NQLQSIPAGAFDKLTNLQTLSLSTNQ-LQSVP 171
Score = 34.7 bits (78), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 43/112 (38%), Positives = 54/112 (48%), Gaps = 4/112 (3%)
Query: 15 LSKLQVLDLSSNHIVGEIRVQLGKLFSLNKLILNMNQLYGGMPLKL-DSLTKLQYLDLSA 73
L+KL L+L N + L L L L NQL +PL + D LT+L L L
Sbjct: 58 LTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQL-ASLPLGVFDHLTQLDKLYLGG 116
Query: 74 NKLWSLILENIDNLLKLCYLNLSNNQFIQKIPI-ELEKLIPLSELDLNYNFL 124
N+L SL D L KL L L+ NQ +Q IP +KL L L L+ N L
Sbjct: 117 NQLKSLPSGVFDRLTKLKELRLNTNQ-LQSIPAGAFDKLTNLQTLSLSTNQL 167
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 40.8 bits (94), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 57/121 (47%), Gaps = 9/121 (7%)
Query: 4 IPRSIPLEIGDLSKLQVLDLSSNHIVGEIRVQ--LGKLFSLNKLILNMNQLYGGMPLKLD 61
IPR IPL +L L +++ +G I G+L L KL L NQL G P +
Sbjct: 23 IPRDIPLHTTEL-------LLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFE 75
Query: 62 SLTKLQYLDLSANKLWSLILENIDNLLKLCYLNLSNNQFIQKIPIELEKLIPLSELDLNY 121
+ +Q L L NK+ + + L +L LNL +NQ +P E L L+ L+L
Sbjct: 76 GASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLAS 135
Query: 122 N 122
N
Sbjct: 136 N 136
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 39.3 bits (90), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 53/118 (44%), Gaps = 3/118 (2%)
Query: 11 EIGDLSKLQVLDLSSNHIVGEIRVQLGKLFSLNKLILNMNQLYGGMPLKLDSLTKLQYLD 70
+ S+LQ LDLS I L L+ LIL N + P LT L+ L
Sbjct: 51 SFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLV 110
Query: 71 LSANKLWSLILENIDNLLKLCYLNLSNNQFIQ--KIPIELEKLIPLSELDLNYNFLDV 126
KL SL I L+ L LN+++N FI K+P L L +DL+YN++
Sbjct: 111 AVETKLASLESFPIGQLITLKKLNVAHN-FIHSCKLPAYFSNLTNLVHVDLSYNYIQT 167
Score = 27.7 bits (60), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 32/64 (50%)
Query: 64 TKLQYLDLSANKLWSLILENIDNLLKLCYLNLSNNQFIQKIPIELEKLIPLSELDLNYNF 123
T L +LDLS +L + D L +L LN+S+N + +L LS LD ++N
Sbjct: 473 TNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNR 532
Query: 124 LDVE 127
++
Sbjct: 533 IETS 536
Score = 26.6 bits (57), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 26/50 (52%), Gaps = 7/50 (14%)
Query: 32 IRVQLGKLFSLN-----KLILNMNQLYGGMPLKLDSLTKLQYLDLSANKL 76
IR QL + +L+ L L MN+ G + K +L L YLDLS N L
Sbjct: 315 IRCQLKQFPTLDLPFLKSLTLTMNK--GSISFKKVALPSLSYLDLSRNAL 362
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 38.9 bits (89), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 53/118 (44%), Gaps = 3/118 (2%)
Query: 11 EIGDLSKLQVLDLSSNHIVGEIRVQLGKLFSLNKLILNMNQLYGGMPLKLDSLTKLQYLD 70
+ S+LQ LDLS I L L+ LIL N + P LT L+ L
Sbjct: 46 SFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLV 105
Query: 71 LSANKLWSLILENIDNLLKLCYLNLSNNQFIQ--KIPIELEKLIPLSELDLNYNFLDV 126
KL SL I L+ L LN+++N FI K+P L L +DL+YN++
Sbjct: 106 AVETKLASLESFPIGQLITLKKLNVAHN-FIHSCKLPAYFSNLTNLVHVDLSYNYIQT 162
Score = 27.7 bits (60), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 32/64 (50%)
Query: 64 TKLQYLDLSANKLWSLILENIDNLLKLCYLNLSNNQFIQKIPIELEKLIPLSELDLNYNF 123
T L +LDLS +L + D L +L LN+S+N + +L LS LD ++N
Sbjct: 468 TNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNR 527
Query: 124 LDVE 127
++
Sbjct: 528 IETS 531
Score = 26.6 bits (57), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 26/50 (52%), Gaps = 7/50 (14%)
Query: 32 IRVQLGKLFSLN-----KLILNMNQLYGGMPLKLDSLTKLQYLDLSANKL 76
IR QL + +L+ L L MN+ G + K +L L YLDLS N L
Sbjct: 310 IRCQLKQFPTLDLPFLKSLTLTMNK--GSISFKKVALPSLSYLDLSRNAL 357
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/130 (32%), Positives = 59/130 (45%), Gaps = 8/130 (6%)
Query: 1 MNNIPRSIPLEIGDLSKLQVLDLSSNHIVGEIRVQLGKLFSLNKLILNMNQLYGGMPLKL 60
+ ++P IP S L+L SN + KL L KL L+ NQ+
Sbjct: 19 LTSVPTGIP------SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVF 72
Query: 61 DSLTKLQYLDLSANKLWSLILENIDNLLKLCYLNLSNNQFIQKIPIEL-EKLIPLSELDL 119
D LTKL L L NKL SL D L +L L L NQ ++ +P + ++L L ++ L
Sbjct: 73 DKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQ-LKSVPDGIFDRLTSLQKIWL 131
Query: 120 NYNFLDVEIP 129
+ N D P
Sbjct: 132 HTNPWDCSCP 141
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/112 (37%), Positives = 56/112 (50%), Gaps = 2/112 (1%)
Query: 14 DLSKLQVLDLSSNHIVGEIRVQLGKLFSLNKLILNMNQLYGGMPLKLDSLTKLQYLDLSA 73
+L+ L L L+ N + KL +L +L+L NQL D LT L YL L
Sbjct: 83 ELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLYLYH 142
Query: 74 NKLWSLILENIDNLLKLCYLNLSNNQFIQKIPIEL-EKLIPLSELDLNYNFL 124
N+L SL D L L L+L NNQ +Q +P + +KL L +L LN N L
Sbjct: 143 NQLQSLPKGVFDKLTNLTRLDLDNNQ-LQSLPEGVFDKLTQLKQLSLNDNQL 193
Score = 34.3 bits (77), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 37/90 (41%), Positives = 48/90 (53%), Gaps = 2/90 (2%)
Query: 36 LGKLFSLNKLILNMNQLYGGMPLKLDSLTKLQYLDLSANKLWSLILENIDNLLKLCYLNL 95
L +L +L LIL NQL D LT L+ L L N+L SL D L L YL L
Sbjct: 81 LKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLYL 140
Query: 96 SNNQFIQKIPIEL-EKLIPLSELDLNYNFL 124
+NQ +Q +P + +KL L+ LDL+ N L
Sbjct: 141 YHNQ-LQSLPKGVFDKLTNLTRLDLDNNQL 169
Score = 28.1 bits (61), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 48/96 (50%), Gaps = 1/96 (1%)
Query: 6 RSIPLEIGD-LSKLQVLDLSSNHIVGEIRVQLGKLFSLNKLILNMNQLYGGMPLKLDSLT 64
+S+P + D L+ L L L N + + KL +L +L L+ NQL D LT
Sbjct: 122 QSLPDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLT 181
Query: 65 KLQYLDLSANKLWSLILENIDNLLKLCYLNLSNNQF 100
+L+ L L+ N+L S+ D L L ++ L NN +
Sbjct: 182 QLKQLSLNDNQLKSVPDGVFDRLTSLTHIWLLNNPW 217
>pdb|3TWI|D Chain D, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|E Chain E, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|F Chain F, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
Length = 179
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 51/97 (52%), Gaps = 2/97 (2%)
Query: 33 RVQLGKLFSLNKLILNMNQLYGGMPLKLDSLTKLQYLDLSANKLWSLILENIDNLLKLCY 92
V G + L L +NQ+ P DSLT+L YL+L+ N+L +L + D L KL +
Sbjct: 33 SVPAGIPTTTQVLHLYINQITKLEPGVFDSLTQLTYLNLAVNQLTALPVGVFDKLTKLTH 92
Query: 93 LNLSNNQFIQKIPIEL-EKLIPLSELDLNYNFLDVEI 128
L L NQ ++ IP+ + + L L+ + L N D E
Sbjct: 93 LALHINQ-LKSIPMGVFDNLKSLTHIYLFNNPWDCEC 128
Score = 29.3 bits (64), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 43/78 (55%), Gaps = 4/78 (5%)
Query: 64 TKLQYLDLSANKLWSLILENIDNLLKLCYLNLSNNQFIQKIPIEL-EKLIPLSELDLNYN 122
T Q L L N++ L D+L +L YLNL+ NQ + +P+ + +KL L+ L L+ N
Sbjct: 40 TTTQVLHLYINQITKLEPGVFDSLTQLTYLNLAVNQ-LTALPVGVFDKLTKLTHLALHIN 98
Query: 123 FLDVEIPFQIC-NMKSLE 139
L IP + N+KSL
Sbjct: 99 QLK-SIPMGVFDNLKSLT 115
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 37.4 bits (85), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 37/69 (53%), Gaps = 2/69 (2%)
Query: 8 IPLEIGDLSKLQVLDLSSNHIVGEIRVQLGKLFSLNKLILNMNQLYGGMPLKLDSLTKLQ 67
+P EI +LS L+VLDLS N + + +LG F L K + + +P + +L LQ
Sbjct: 262 LPAEIKNLSNLRVLDLSHNRLTS-LPAELGSCFQL-KYFYFFDNMVTTLPWEFGNLCNLQ 319
Query: 68 YLDLSANKL 76
+L + N L
Sbjct: 320 FLGVEGNPL 328
Score = 35.0 bits (79), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 56/114 (49%), Gaps = 19/114 (16%)
Query: 14 DLSKLQVLDLSSNHIVGEIRVQLGKLFSLNKLILNMNQLYGGMPLKLDSLTKLQYLDLSA 73
DLS LQ+ ++S+N + K L +L LN N L +P ++ +L+ L+ LDLS
Sbjct: 230 DLSNLQIFNISAN---------IFKYDFLTRLYLNGNSL-TELPAEIKNLSNLRVLDLSH 279
Query: 74 NKLWSLILENIDNLLKLCYLNLSNNQFIQKIPIELEKLIPLSELDLNYNFLDVE 127
N+L SL E + + +L Y +N + +P E L N FL VE
Sbjct: 280 NRLTSLPAE-LGSCFQLKYFYFFDN-MVTTLPWEFGNLC-------NLQFLGVE 324
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 37.4 bits (85), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 45/128 (35%), Positives = 67/128 (52%), Gaps = 11/128 (8%)
Query: 14 DLSKLQVLDLSSNHIVGEIRVQLGKLFSLNKLILNMNQLYGGMPLKLDSLTKLQYLDLSA 73
+L+ L L+LSSN I +I L L SL +L + NQ+ PL +LT L+ LD+S+
Sbjct: 127 NLTNLNRLELSSNTI-SDISA-LSGLTSLQQLSFSSNQVTDLKPLA--NLTTLERLDISS 182
Query: 74 NKLWSL-ILENIDNLLKLCYLNLSNNQFIQKIPIELEKLIPLSELDLNYNFL-DVEIPFQ 131
NK+ + +L + NL L +NNQ P+ + L L EL LN N L D+
Sbjct: 183 NKVSDISVLAKLTNLESLIA---TNNQISDITPLGI--LTNLDELSLNGNQLKDIGTLAS 237
Query: 132 ICNMKSLE 139
+ N+ L+
Sbjct: 238 LTNLTDLD 245
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 37.4 bits (85), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 45/128 (35%), Positives = 67/128 (52%), Gaps = 11/128 (8%)
Query: 14 DLSKLQVLDLSSNHIVGEIRVQLGKLFSLNKLILNMNQLYGGMPLKLDSLTKLQYLDLSA 73
+L+ L L+LSSN I +I L L SL +L + NQ+ PL +LT L+ LD+S+
Sbjct: 127 NLTNLNRLELSSNTI-SDISA-LSGLTSLQQLSFSSNQVTDLKPLA--NLTTLERLDISS 182
Query: 74 NKLWSL-ILENIDNLLKLCYLNLSNNQFIQKIPIELEKLIPLSELDLNYNFL-DVEIPFQ 131
NK+ + +L + NL L +NNQ P+ + L L EL LN N L D+
Sbjct: 183 NKVSDISVLAKLTNLESLIA---TNNQISDITPLGI--LTNLDELSLNGNQLKDIGTLAS 237
Query: 132 ICNMKSLE 139
+ N+ L+
Sbjct: 238 LTNLTDLD 245
Score = 26.6 bits (57), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 54/126 (42%), Gaps = 26/126 (20%)
Query: 15 LSKLQVLDLSSNHIVGEIRVQLGKLFSLNKLILNMNQLYGGMPLK--------------- 59
L+KL L L +N I L L +L L LN NQL P+
Sbjct: 260 LTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNI 317
Query: 60 -----LDSLTKLQYLDLSANKLWSLILENIDNLLKLCYLNLSNNQFIQKIPIELEKLIPL 114
+ SLTKLQ L S NK+ + ++ NL + +L+ +NQ P L L +
Sbjct: 318 SDISPVSSLTKLQRLFFSNNKVSD--VSSLANLTNINWLSAGHNQISDLTP--LANLTRI 373
Query: 115 SELDLN 120
++L LN
Sbjct: 374 TQLGLN 379
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 36.6 bits (83), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 45/128 (35%), Positives = 67/128 (52%), Gaps = 11/128 (8%)
Query: 14 DLSKLQVLDLSSNHIVGEIRVQLGKLFSLNKLILNMNQLYGGMPLKLDSLTKLQYLDLSA 73
+L+ L L+LSSN I +I L L SL +L + NQ+ PL +LT L+ LD+S+
Sbjct: 127 NLTNLNRLELSSNTI-SDISA-LSGLTSLQQLNFSSNQVTDLKPLA--NLTTLERLDISS 182
Query: 74 NKLWSL-ILENIDNLLKLCYLNLSNNQFIQKIPIELEKLIPLSELDLNYNFL-DVEIPFQ 131
NK+ + +L + NL L +NNQ P+ + L L EL LN N L D+
Sbjct: 183 NKVSDISVLAKLTNLESLIA---TNNQISDITPLGI--LTNLDELSLNGNQLKDIGTLAS 237
Query: 132 ICNMKSLE 139
+ N+ L+
Sbjct: 238 LTNLTDLD 245
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 36.6 bits (83), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 43/80 (53%), Gaps = 5/80 (6%)
Query: 12 IGDLSKLQVLDLSSNHIVGEIRVQLGKLFSLNKLILNMNQLYGGMPLKL----DSLTKLQ 67
DL L+VL L +NHIV R + L KL L+ NQ+ P++L + L KL
Sbjct: 108 FSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQI-SRFPVELIKDGNKLPKLM 166
Query: 68 YLDLSANKLWSLILENIDNL 87
LDLS+NKL L L ++ L
Sbjct: 167 LLDLSSNKLKKLPLTDLQKL 186
Score = 30.0 bits (66), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 43/79 (54%), Gaps = 9/79 (11%)
Query: 3 NIPRSIPLEIGDLSKLQVLDLSSNHIVGEIRVQLG--KLFSLNKLILNMNQLYGGMPLKL 60
N+P+S+P S +LDLS N++ +R + +L +L+ L+L+ N L
Sbjct: 32 NVPQSLP------SYTALLDLSHNNL-SRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAF 84
Query: 61 DSLTKLQYLDLSANKLWSL 79
+ L+YLDLS+N L +L
Sbjct: 85 VPVPNLRYLDLSSNHLHTL 103
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 35.4 bits (80), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 60/129 (46%), Gaps = 3/129 (2%)
Query: 2 NNIPRSIPLEIGDLSKL-QVLDLSSNHIVGEIRVQLGKLFSLNKLILNMNQLYGGMPLKL 60
N I +IP G SKL + +S N + G+I L +L + L+ N L G +
Sbjct: 159 NRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASVLF 217
Query: 61 DSLTKLQYLDLSANKLWSLILENIDNLLKLCYLNLSNNQFIQKIPIELEKLIPLSELDLN 120
S Q + L+ N L + L + L L+L NN+ +P L +L L L+++
Sbjct: 218 GSDKNTQKIHLAKNSL-AFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVS 276
Query: 121 YNFLDVEIP 129
+N L EIP
Sbjct: 277 FNNLCGEIP 285
Score = 27.3 bits (59), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 46/96 (47%), Gaps = 4/96 (4%)
Query: 12 IGDLSKLQVLDLSSNHIVGEI-RVQLGKLFSLNKLILNMNQLYGGMPLKLDSLTKLQYLD 70
G Q + L+ N + ++ +V L K +LN L L N++YG +P L L L L+
Sbjct: 217 FGSDKNTQKIHLAKNSLAFDLGKVGLSK--NLNGLDLRNNRIYGTLPQGLTQLKFLHSLN 274
Query: 71 LSANKLWSLILENIDNLLKLCYLNLSNNQFIQKIPI 106
+S N L I + NL + +NN+ + P+
Sbjct: 275 VSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCGSPL 309
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 35.0 bits (79), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 59/124 (47%), Gaps = 8/124 (6%)
Query: 2 NNIPRSIPLEIGDLSKLQVLDLSSNHIVGEIRVQLGKLFSLNKLILNMNQLYGGMPLKLD 61
++P IP + LDL +N + +L SL +L L N+L +
Sbjct: 20 TSVPTGIPAQT------TYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFN 73
Query: 62 SLTKLQYLDLSANKLWSLILENIDNLLKLCYLNLSNNQFIQKIPIEL-EKLIPLSELDLN 120
LT L YL+LS N+L SL D L +L L L+ NQ +Q +P + +KL L +L L
Sbjct: 74 KLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQ-LQSLPDGVFDKLTQLKDLRLY 132
Query: 121 YNFL 124
N L
Sbjct: 133 QNQL 136
Score = 32.3 bits (72), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 43/91 (47%)
Query: 15 LSKLQVLDLSSNHIVGEIRVQLGKLFSLNKLILNMNQLYGGMPLKLDSLTKLQYLDLSAN 74
L+ L L+LS+N + KL L +L LN NQL D LT+L+ L L N
Sbjct: 75 LTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQN 134
Query: 75 KLWSLILENIDNLLKLCYLNLSNNQFIQKIP 105
+L S+ D L L Y+ L +N + P
Sbjct: 135 QLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 165
Score = 30.4 bits (67), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 60/126 (47%), Gaps = 3/126 (2%)
Query: 6 RSIPLEIGD-LSKLQVLDLSSNHIVGEIRVQLGKLFSLNKLILNMNQLYGGMPLKLDSLT 64
+S+P + D L+ L L L N + KL SL L L+ NQL D LT
Sbjct: 41 KSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLT 100
Query: 65 KLQYLDLSANKLWSLILENIDNLLKLCYLNLSNNQFIQKIPIEL-EKLIPLSELDLNYNF 123
+L+ L L+ N+L SL D L +L L L NQ ++ +P + ++L L + L+ N
Sbjct: 101 QLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQ-LKSVPDGVFDRLTSLQYIWLHDNP 159
Query: 124 LDVEIP 129
D P
Sbjct: 160 WDCTCP 165
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 34.3 bits (77), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 48/95 (50%), Gaps = 2/95 (2%)
Query: 7 SIPLEIGD-LSKLQVLDLSSNHIVGEIRVQLGKLFSLNKLILNMNQLYGGMPLKLDSLTK 65
++P+ + D L++L VLDL +N + +L L +L + N+L +P ++ LT
Sbjct: 78 ALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTH 136
Query: 66 LQYLDLSANKLWSLILENIDNLLKLCYLNLSNNQF 100
L +L L N+L S+ D L L + L N +
Sbjct: 137 LTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPW 171
Score = 33.5 bits (75), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 45/88 (51%), Gaps = 1/88 (1%)
Query: 45 LILNMNQLYGGMPLKLDSLTKLQYLDLSANKLWSLILENIDNLLKLCYLNLSNNQFIQKI 104
L L+ NQ+ P DSL L+ L L +N+L +L + D+L +L L+L NQ
Sbjct: 45 LYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLP 104
Query: 105 PIELEKLIPLSELDLNYNFLDVEIPFQI 132
++L+ L EL + N L E+P I
Sbjct: 105 SAVFDRLVHLKELFMCCNKL-TELPRGI 131
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 32.7 bits (73), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 45/128 (35%), Positives = 66/128 (51%), Gaps = 12/128 (9%)
Query: 14 DLSKLQVLDLSSNHIVGEIRVQLGKLFSLNKLILNMNQLYGGMPLKLDSLTKLQYLDLSA 73
+L+ L L+LSSN I +I L L SL +L NQ+ PL +LT L+ LD+S+
Sbjct: 131 NLTNLNRLELSSNTI-SDISA-LSGLTSLQQLSFG-NQVTDLKPLA--NLTTLERLDISS 185
Query: 74 NKLWSL-ILENIDNLLKLCYLNLSNNQFIQKIPIELEKLIPLSELDLNYNFL-DVEIPFQ 131
NK+ + +L + NL L +NNQ P+ + L L EL LN N L D+
Sbjct: 186 NKVSDISVLAKLTNLESLIA---TNNQISDITPLGI--LTNLDELSLNGNQLKDIGTLAS 240
Query: 132 ICNMKSLE 139
+ N+ L+
Sbjct: 241 LTNLTDLD 248
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 32.7 bits (73), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 45/128 (35%), Positives = 66/128 (51%), Gaps = 12/128 (9%)
Query: 14 DLSKLQVLDLSSNHIVGEIRVQLGKLFSLNKLILNMNQLYGGMPLKLDSLTKLQYLDLSA 73
+L+ L L+LSSN I +I L L SL +L NQ+ PL +LT L+ LD+S+
Sbjct: 132 NLTNLNRLELSSNTI-SDISA-LSGLTSLQQLSFG-NQVTDLKPLA--NLTTLERLDISS 186
Query: 74 NKLWSL-ILENIDNLLKLCYLNLSNNQFIQKIPIELEKLIPLSELDLNYNFL-DVEIPFQ 131
NK+ + +L + NL L +NNQ P+ + L L EL LN N L D+
Sbjct: 187 NKVSDISVLAKLTNLESLIA---TNNQISDITPLGI--LTNLDELSLNGNQLKDIGTLAS 241
Query: 132 ICNMKSLE 139
+ N+ L+
Sbjct: 242 LTNLTDLD 249
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 32.3 bits (72), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 36/76 (47%), Gaps = 1/76 (1%)
Query: 14 DLSKLQVLDLSSNHIVGEIRVQLGKLFSLNKLILNMNQLYGGMPLKLDSLTKLQYLDLSA 73
+L KL+VLDLS NHI L +L +L L+ NQL D LT LQ + L
Sbjct: 345 NLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHT 404
Query: 74 NKLWSLILENIDNLLK 89
N W ID L +
Sbjct: 405 NP-WDCSCPRIDYLSR 419
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 32.3 bits (72), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 45/98 (45%), Gaps = 6/98 (6%)
Query: 3 NIPRSIPLEIGDLSKLQVLDLSSNHIVGEIRVQLGKLFSLNKLILNMNQLYGGMPLKLDS 62
++P IP + Q L L++N I L +L +L N N+L D
Sbjct: 26 SVPAGIPTD------KQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDK 79
Query: 63 LTKLQYLDLSANKLWSLILENIDNLLKLCYLNLSNNQF 100
LT+L LDL+ N L S+ DNL L ++ L NN +
Sbjct: 80 LTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPW 117
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 32.0 bits (71), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 45/128 (35%), Positives = 66/128 (51%), Gaps = 12/128 (9%)
Query: 14 DLSKLQVLDLSSNHIVGEIRVQLGKLFSLNKLILNMNQLYGGMPLKLDSLTKLQYLDLSA 73
+L+ L L+LSSN I +I L L SL +L NQ+ PL +LT L+ LD+S+
Sbjct: 127 NLTNLNRLELSSNTI-SDISA-LSGLTSLQQLNFG-NQVTDLKPLA--NLTTLERLDISS 181
Query: 74 NKLWSL-ILENIDNLLKLCYLNLSNNQFIQKIPIELEKLIPLSELDLNYNFL-DVEIPFQ 131
NK+ + +L + NL L +NNQ P+ + L L EL LN N L D+
Sbjct: 182 NKVSDISVLAKLTNLESLIA---TNNQISDITPLGI--LTNLDELSLNGNQLKDIGTLAS 236
Query: 132 ICNMKSLE 139
+ N+ L+
Sbjct: 237 LTNLTDLD 244
Score = 26.6 bits (57), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 54/126 (42%), Gaps = 26/126 (20%)
Query: 15 LSKLQVLDLSSNHIVGEIRVQLGKLFSLNKLILNMNQLYGGMPLK--------------- 59
L+KL L L +N I L L +L L LN NQL P+
Sbjct: 259 LTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNI 316
Query: 60 -----LDSLTKLQYLDLSANKLWSLILENIDNLLKLCYLNLSNNQFIQKIPIELEKLIPL 114
+ SLTKLQ L S NK+ + ++ NL + +L+ +NQ P L L +
Sbjct: 317 SDISPVSSLTKLQRLFFSNNKVSD--VSSLANLTNINWLSAGHNQISDLTP--LANLTRI 372
Query: 115 SELDLN 120
++L LN
Sbjct: 373 TQLGLN 378
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 32.0 bits (71), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 45/128 (35%), Positives = 66/128 (51%), Gaps = 12/128 (9%)
Query: 14 DLSKLQVLDLSSNHIVGEIRVQLGKLFSLNKLILNMNQLYGGMPLKLDSLTKLQYLDLSA 73
+L+ L L+LSSN I +I L L SL +L NQ+ PL +LT L+ LD+S+
Sbjct: 127 NLTNLNRLELSSNTI-SDISA-LSGLTSLQQLNFG-NQVTDLKPLA--NLTTLERLDISS 181
Query: 74 NKLWSL-ILENIDNLLKLCYLNLSNNQFIQKIPIELEKLIPLSELDLNYNFL-DVEIPFQ 131
NK+ + +L + NL L +NNQ P+ + L L EL LN N L D+
Sbjct: 182 NKVSDISVLAKLTNLESLIA---TNNQISDITPLGI--LTNLDELSLNGNQLKDIGTLAS 236
Query: 132 ICNMKSLE 139
+ N+ L+
Sbjct: 237 LTNLTDLD 244
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 30.8 bits (68), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 51/103 (49%), Gaps = 8/103 (7%)
Query: 15 LSKLQVLDLSSNHI-VGEIRV--QLGKLFSLNKLILNMNQLYGGMPLKLDSLTKLQYLDL 71
L LQ L+L NH G I+ L L L L+L+ L SL + ++DL
Sbjct: 448 LPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDL 507
Query: 72 SANKLWSLILENIDNLLKLCYLNLSNNQFIQKIPIELEKLIPL 114
S N+L S +E + + LK YLNL++N I I L L+P+
Sbjct: 508 SHNRLTSSSIEALSH-LKGIYLNLASNH----ISIILPSLLPI 545
Score = 27.3 bits (59), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 43/82 (52%), Gaps = 4/82 (4%)
Query: 56 MPLKLDSLTKLQYLDLSANKLWSLILENIDNLLKLCYLNLSNNQFIQKIPIE-LEKLIPL 114
+P L L+ L+ L LSANK +L + N L +L++ N ++ LE L L
Sbjct: 293 LPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENL 352
Query: 115 SELDLNYNFLDVEIPFQICNMK 136
ELDL+++ D+E CN++
Sbjct: 353 RELDLSHD--DIETS-DCCNLQ 371
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 30.8 bits (68), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 41/91 (45%)
Query: 8 IPLEIGDLSKLQVLDLSSNHIVGEIRVQLGKLFSLNKLILNMNQLYGGMPLKLDSLTKLQ 67
+P E+ + L ++DLS+N I + L LIL+ N+L P D L L+
Sbjct: 46 VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLR 105
Query: 68 YLDLSANKLWSLILENIDNLLKLCYLNLSNN 98
L L N + + ++L L +L + N
Sbjct: 106 LLSLHGNDISVVPEGAFNDLSALSHLAIGAN 136
>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
Length = 170
Score = 30.8 bits (68), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 46/100 (46%), Gaps = 6/100 (6%)
Query: 1 MNNIPRSIPLEIGDLSKLQVLDLSSNHIVGEIRVQLGKLFSLNKLILNMNQLYGGMPLKL 60
+ ++P IP + QVL L N I +L L +L L+ NQL
Sbjct: 21 LASVPTGIP------TTTQVLYLYDNRITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVF 74
Query: 61 DSLTKLQYLDLSANKLWSLILENIDNLLKLCYLNLSNNQF 100
D LT+L L L+ N+L S+ DNL L ++ L NN +
Sbjct: 75 DKLTQLTQLSLNDNQLKSIPRGAFDNLRSLTHIWLLNNPW 114
Score = 26.9 bits (58), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 57 PLKLDSLTKLQYLDLSANKLWSLILENIDNLLKLCYLNLSNNQFIQKIP 105
P D LT+L LDL N+L L D L +L L+L++NQ ++ IP
Sbjct: 47 PGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ-LKSIP 94
>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor
Length = 170
Score = 30.8 bits (68), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 46/100 (46%), Gaps = 6/100 (6%)
Query: 1 MNNIPRSIPLEIGDLSKLQVLDLSSNHIVGEIRVQLGKLFSLNKLILNMNQLYGGMPLKL 60
+ ++P IP + QVL L N I +L L +L L+ NQL
Sbjct: 21 LASVPTGIP------TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVF 74
Query: 61 DSLTKLQYLDLSANKLWSLILENIDNLLKLCYLNLSNNQF 100
D LT+L L L+ N+L S+ DNL L ++ L NN +
Sbjct: 75 DKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPW 114
Score = 28.1 bits (61), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Query: 34 VQLGKLFSLNKLILNMNQLYGGMPLKLDSLTKLQYLDLSANKLWSLILENIDNLLKLCYL 93
V G + L L NQ+ P D LT+L LDL N+L L D L +L L
Sbjct: 24 VPTGIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQL 83
Query: 94 NLSNNQFIQKIP 105
+L++NQ ++ IP
Sbjct: 84 SLNDNQ-LKSIP 94
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 30.8 bits (68), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 43/124 (34%), Positives = 62/124 (50%), Gaps = 16/124 (12%)
Query: 12 IGDLSKLQVLDLSSNHIV-GEIRVQ--LGKLFSLNKLILNMNQLYGGMPLKLDSLTKLQY 68
+ L L+ L+L NH G I L + SL LIL+ L SL K+ +
Sbjct: 442 LAGLPVLRHLNLKGNHFQDGTITKTNLLQTVGSLEVLILSSCGLLSIDQQAFHSLGKMSH 501
Query: 69 LDLSANKLWSLILENIDNL--LKLCYLNLSNNQFIQKIPIELEKLIPL----SELDLNYN 122
+DLS N SL ++ID+L LK YLNL+ N I I +L+P+ S ++L++N
Sbjct: 502 VDLSHN---SLTCDSIDSLSHLKGIYLNLAAN----SINIISPRLLPILSQQSTINLSHN 554
Query: 123 FLDV 126
LD
Sbjct: 555 PLDC 558
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 30.4 bits (67), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 45/100 (45%), Gaps = 6/100 (6%)
Query: 1 MNNIPRSIPLEIGDLSKLQVLDLSSNHIVGEIRVQLGKLFSLNKLILNMNQLYGGMPLKL 60
+N+IP G ++ LDLS+N I L + +L L+L N +
Sbjct: 17 LNSIPS------GLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSF 70
Query: 61 DSLTKLQYLDLSANKLWSLILENIDNLLKLCYLNLSNNQF 100
SL L++LDLS N L +L L L +LNL N +
Sbjct: 71 SSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPY 110
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 30.4 bits (67), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 48/95 (50%), Gaps = 5/95 (5%)
Query: 34 VQLGKLFSLNKLILNMNQLYGGMPLKLD--SLTKLQYLDLSANKLWSLILENIDNLLKLC 91
+ + K S ILN++Q Y D SL+KL+ L +S N++ L + +L
Sbjct: 13 IHVPKDLSQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELE 72
Query: 92 YLNLSNNQFIQKIPIELEKLIPLSELDLNYNFLDV 126
YL+LS+N+ ++ I + L LDL++N D
Sbjct: 73 YLDLSHNKLVK---ISCHPTVNLKHLDLSFNAFDA 104
Score = 26.9 bits (58), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 56/127 (44%), Gaps = 26/127 (20%)
Query: 21 LDLSSNHIVGEIRVQLGKLFSLNKLILNMNQLY--GGMPLKLDSLTKLQYLDLSANKL-- 76
LD S+N + + G L L LIL MNQL + + LQ LD+S N +
Sbjct: 329 LDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSY 388
Query: 77 --------WS---LILENIDNLL----------KLCYLNLSNNQFIQKIPIELEKLIPLS 115
W+ L L N+L ++ L+L +N+ I+ IP ++ KL L
Sbjct: 389 DEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNK-IKSIPKQVVKLEALQ 447
Query: 116 ELDLNYN 122
EL++ N
Sbjct: 448 ELNVASN 454
Score = 26.6 bits (57), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 6 RSIPLEIGDLSKLQVLDLSSNHIVGEIRVQLGKLFSLNKLILNMNQLYGGMPLKLDSLTK 65
+SIP ++ L LQ L+++SN + +L SL K+ L+ N P ++D L++
Sbjct: 434 KSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP-RIDYLSR 492
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 30.4 bits (67), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 42/89 (47%), Gaps = 6/89 (6%)
Query: 6 RSIPLEIGDLSKLQVLDLSSNHIVGEIRVQLGKLFSLNKLILNMNQLYGGMPLKLDSLTK 65
+S+PL L L VLD+S N + L L L +L L N+L P L K
Sbjct: 90 QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPK 149
Query: 66 LQYLDLSANKLWSLI------LENIDNLL 88
L+ L L+ N+L L LEN+D LL
Sbjct: 150 LEKLSLANNQLTELPAGLLNGLENLDTLL 178
Score = 28.9 bits (63), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 46/98 (46%), Gaps = 2/98 (2%)
Query: 37 GKLFSLNKLILNMNQLYGGMPLKLDSLTKLQYLDLSANKLWSLILENIDNLLKLCYLNLS 96
G L L L L+ NQL +PL +L L LD+S N+L SL L + L +L L L
Sbjct: 74 GTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 97 NNQFIQKIPIELEKLIPLSELDLNYNFLDVEIPFQICN 134
N+ P L L +L L N L E+P + N
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNQL-TELPAGLLN 169
>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
Length = 178
Score = 30.4 bits (67), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 46/100 (46%), Gaps = 6/100 (6%)
Query: 1 MNNIPRSIPLEIGDLSKLQVLDLSSNHIVGEIRVQLGKLFSLNKLILNMNQLYGGMPLKL 60
+ ++P IP + QVL L N I +L L +L L+ NQL
Sbjct: 29 LASVPTGIP------TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVF 82
Query: 61 DSLTKLQYLDLSANKLWSLILENIDNLLKLCYLNLSNNQF 100
D LT+L L L+ N+L S+ DNL L ++ L NN +
Sbjct: 83 DKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPW 122
Score = 28.1 bits (61), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Query: 34 VQLGKLFSLNKLILNMNQLYGGMPLKLDSLTKLQYLDLSANKLWSLILENIDNLLKLCYL 93
V G + L L NQ+ P D LT+L LDL N+L L D L +L L
Sbjct: 32 VPTGIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQL 91
Query: 94 NLSNNQFIQKIP 105
+L++NQ ++ IP
Sbjct: 92 SLNDNQ-LKSIP 102
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 30.4 bits (67), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 42/89 (47%), Gaps = 6/89 (6%)
Query: 6 RSIPLEIGDLSKLQVLDLSSNHIVGEIRVQLGKLFSLNKLILNMNQLYGGMPLKLDSLTK 65
+S+PL L L VLD+S N + L L L +L L N+L P L K
Sbjct: 90 QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPK 149
Query: 66 LQYLDLSANKLWSLI------LENIDNLL 88
L+ L L+ N+L L LEN+D LL
Sbjct: 150 LEKLSLANNQLTELPAGLLNGLENLDTLL 178
Score = 28.9 bits (63), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 46/98 (46%), Gaps = 2/98 (2%)
Query: 37 GKLFSLNKLILNMNQLYGGMPLKLDSLTKLQYLDLSANKLWSLILENIDNLLKLCYLNLS 96
G L L L L+ NQL +PL +L L LD+S N+L SL L + L +L L L
Sbjct: 74 GTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 97 NNQFIQKIPIELEKLIPLSELDLNYNFLDVEIPFQICN 134
N+ P L L +L L N L E+P + N
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNQL-TELPAGLLN 169
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 30.4 bits (67), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 42/89 (47%), Gaps = 6/89 (6%)
Query: 6 RSIPLEIGDLSKLQVLDLSSNHIVGEIRVQLGKLFSLNKLILNMNQLYGGMPLKLDSLTK 65
+S+PL L L VLD+S N + L L L +L L N+L P L K
Sbjct: 90 QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPK 149
Query: 66 LQYLDLSANKLWSLI------LENIDNLL 88
L+ L L+ N+L L LEN+D LL
Sbjct: 150 LEKLSLANNQLTELPAGLLNGLENLDTLL 178
Score = 28.9 bits (63), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 46/98 (46%), Gaps = 2/98 (2%)
Query: 37 GKLFSLNKLILNMNQLYGGMPLKLDSLTKLQYLDLSANKLWSLILENIDNLLKLCYLNLS 96
G L L L L+ NQL +PL +L L LD+S N+L SL L + L +L L L
Sbjct: 74 GTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 97 NNQFIQKIPIELEKLIPLSELDLNYNFLDVEIPFQICN 134
N+ P L L +L L N L E+P + N
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNQL-TELPAGLLN 169
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 30.0 bits (66), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 45/100 (45%), Gaps = 6/100 (6%)
Query: 1 MNNIPRSIPLEIGDLSKLQVLDLSSNHIVGEIRVQLGKLFSLNKLILNMNQLYGGMPLKL 60
+N+IP G ++ LDLS+N I L + +L L+L N +
Sbjct: 43 LNSIPS------GLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSF 96
Query: 61 DSLTKLQYLDLSANKLWSLILENIDNLLKLCYLNLSNNQF 100
SL L++LDLS N L +L L L +LNL N +
Sbjct: 97 SSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPY 136
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 30.0 bits (66), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 42/89 (47%), Gaps = 6/89 (6%)
Query: 6 RSIPLEIGDLSKLQVLDLSSNHIVGEIRVQLGKLFSLNKLILNMNQLYGGMPLKLDSLTK 65
+S+PL L L VLD+S N + L L L +L L N+L P L K
Sbjct: 90 QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPK 149
Query: 66 LQYLDLSANKLWSLI------LENIDNLL 88
L+ L L+ N+L L LEN+D LL
Sbjct: 150 LEKLSLANNQLTELPAGLLNGLENLDTLL 178
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 46/98 (46%), Gaps = 2/98 (2%)
Query: 37 GKLFSLNKLILNMNQLYGGMPLKLDSLTKLQYLDLSANKLWSLILENIDNLLKLCYLNLS 96
G L L L L+ NQL +PL +L L LD+S N+L SL L + L +L L L
Sbjct: 74 GTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 97 NNQFIQKIPIELEKLIPLSELDLNYNFLDVEIPFQICN 134
N+ P L L +L L N L E+P + N
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNQL-TELPAGLLN 169
>pdb|4ARN|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|C Chain C, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|D Chain D, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARR|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
pdb|4ARR|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
Length = 279
Score = 29.6 bits (65), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 33/76 (43%), Gaps = 1/76 (1%)
Query: 14 DLSKLQVLDLSSNHIVGEIRVQLGKLFSLNKLILNMNQLYGGMPLKLDSLTKLQYLDLSA 73
DL L+ ++ SN + R GK+ L +L L NQL D LT LQ + L
Sbjct: 168 DLENLESIEFGSNKLRQMPRGIFGKMPKLKQLNLASNQLKSVPDGIFDRLTSLQKIWLHT 227
Query: 74 NKLWSLILENIDNLLK 89
N W ID L +
Sbjct: 228 NP-WDCSCPRIDYLSR 242
Score = 27.3 bits (59), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 40/76 (52%), Gaps = 3/76 (3%)
Query: 56 MPLKL-DSLTKLQYLDLSANKLWSLILENIDNLLKLCYLNLSNNQFIQKIPIEL-EKLIP 113
MP L D L L+ ++ +NKL + + KL LNL++NQ ++ +P + ++L
Sbjct: 161 MPSHLFDDLENLESIEFGSNKLRQMPRGIFGKMPKLKQLNLASNQ-LKSVPDGIFDRLTS 219
Query: 114 LSELDLNYNFLDVEIP 129
L ++ L+ N D P
Sbjct: 220 LQKIWLHTNPWDCSCP 235
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 29.3 bits (64), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 41/89 (46%), Gaps = 6/89 (6%)
Query: 6 RSIPLEIGDLSKLQVLDLSSNHIVGEIRVQLGKLFSLNKLILNMNQLYGGMPLKLDSLTK 65
+S+PL L L VLD+S N + L L L +L L N+L P L K
Sbjct: 91 QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPK 150
Query: 66 LQYLDLSANKLWSLI------LENIDNLL 88
L+ L L+ N L L LEN+D LL
Sbjct: 151 LEKLSLANNNLTELPAGLLNGLENLDTLL 179
Score = 28.9 bits (63), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 46/98 (46%), Gaps = 2/98 (2%)
Query: 37 GKLFSLNKLILNMNQLYGGMPLKLDSLTKLQYLDLSANKLWSLILENIDNLLKLCYLNLS 96
G L L L L+ NQL +PL +L L LD+S N+L SL L + L +L L L
Sbjct: 75 GTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 133
Query: 97 NNQFIQKIPIELEKLIPLSELDLNYNFLDVEIPFQICN 134
N+ P L L +L L N L E+P + N
Sbjct: 134 GNELKTLPPGLLTPTPKLEKLSLANNNL-TELPAGLLN 170
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 29.3 bits (64), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 43/94 (45%), Gaps = 2/94 (2%)
Query: 7 SIPLEIGDLSKLQVLDLSSNHIVGEIRVQLGKLFSLNKLILNMNQLYGGMPLKLDSLTKL 66
SIP G + ++ LDLS N I L +L LIL +++ SL L
Sbjct: 19 SIP--SGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSL 76
Query: 67 QYLDLSANKLWSLILENIDNLLKLCYLNLSNNQF 100
++LDLS N L SL L L YLNL N +
Sbjct: 77 EHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPY 110
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 29.3 bits (64), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 41/89 (46%), Gaps = 6/89 (6%)
Query: 6 RSIPLEIGDLSKLQVLDLSSNHIVGEIRVQLGKLFSLNKLILNMNQLYGGMPLKLDSLTK 65
+S+PL L L VLD+S N + L L L +L L N+L P L K
Sbjct: 90 QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPK 149
Query: 66 LQYLDLSANKLWSLI------LENIDNLL 88
L+ L L+ N L L LEN+D LL
Sbjct: 150 LEKLSLANNNLTELPAGLLNGLENLDTLL 178
Score = 28.9 bits (63), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 46/98 (46%), Gaps = 2/98 (2%)
Query: 37 GKLFSLNKLILNMNQLYGGMPLKLDSLTKLQYLDLSANKLWSLILENIDNLLKLCYLNLS 96
G L L L L+ NQL +PL +L L LD+S N+L SL L + L +L L L
Sbjct: 74 GTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 97 NNQFIQKIPIELEKLIPLSELDLNYNFLDVEIPFQICN 134
N+ P L L +L L N L E+P + N
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNNL-TELPAGLLN 169
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 29.3 bits (64), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 41/89 (46%), Gaps = 6/89 (6%)
Query: 6 RSIPLEIGDLSKLQVLDLSSNHIVGEIRVQLGKLFSLNKLILNMNQLYGGMPLKLDSLTK 65
+S+PL L L VLD+S N + L L L +L L N+L P L K
Sbjct: 90 QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPK 149
Query: 66 LQYLDLSANKLWSLI------LENIDNLL 88
L+ L L+ N L L LEN+D LL
Sbjct: 150 LEKLSLANNNLTELPAGLLNGLENLDTLL 178
Score = 28.5 bits (62), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 46/98 (46%), Gaps = 2/98 (2%)
Query: 37 GKLFSLNKLILNMNQLYGGMPLKLDSLTKLQYLDLSANKLWSLILENIDNLLKLCYLNLS 96
G L L L L+ NQL +PL +L L LD+S N+L SL L + L +L L L
Sbjct: 74 GTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 97 NNQFIQKIPIELEKLIPLSELDLNYNFLDVEIPFQICN 134
N+ P L L +L L N L E+P + N
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNNL-TELPAGLLN 169
>pdb|3O53|A Chain A, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain
pdb|3O53|B Chain B, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain
Length = 317
Score = 29.3 bits (64), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
Query: 66 LQYLDLSANKLWSLILENIDNLLKLCYLNLSNNQFIQKIPIELEKLIPLSELDLNYNFL 124
++ LDLS N L + ++ KL LNLS+N + ++LE L L LDLN N++
Sbjct: 36 VKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYE--TLDLESLSTLRTLDLNNNYV 92
>pdb|3OJA|A Chain A, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 487
Score = 29.3 bits (64), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Query: 69 LDLSANKLWSLILENIDNLLKLCYLNLSNNQFIQKIPIELEKLIPLSELDLNYNFL 124
LDLS N L + ++ KL LNLS+N + ++LE L L LDLN N++
Sbjct: 39 LDLSGNPLSQISAADLAPFTKLELLNLSSNVLYE--TLDLESLSTLRTLDLNNNYV 92
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 29.3 bits (64), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 43/94 (45%), Gaps = 2/94 (2%)
Query: 7 SIPLEIGDLSKLQVLDLSSNHIVGEIRVQLGKLFSLNKLILNMNQLYGGMPLKLDSLTKL 66
SIP G + ++ LDLS N I L +L LIL +++ SL L
Sbjct: 45 SIP--SGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSL 102
Query: 67 QYLDLSANKLWSLILENIDNLLKLCYLNLSNNQF 100
++LDLS N L SL L L YLNL N +
Sbjct: 103 EHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPY 136
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 29.3 bits (64), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 41/89 (46%), Gaps = 6/89 (6%)
Query: 6 RSIPLEIGDLSKLQVLDLSSNHIVGEIRVQLGKLFSLNKLILNMNQLYGGMPLKLDSLTK 65
+S+PL L L VLD+S N + L L L +L L N+L P L K
Sbjct: 90 QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPK 149
Query: 66 LQYLDLSANKLWSLI------LENIDNLL 88
L+ L L+ N L L LEN+D LL
Sbjct: 150 LEKLSLANNDLTELPAGLLNGLENLDTLL 178
Score = 28.5 bits (62), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 46/98 (46%), Gaps = 2/98 (2%)
Query: 37 GKLFSLNKLILNMNQLYGGMPLKLDSLTKLQYLDLSANKLWSLILENIDNLLKLCYLNLS 96
G L L L L+ NQL +PL +L L LD+S N+L SL L + L +L L L
Sbjct: 74 GTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 97 NNQFIQKIPIELEKLIPLSELDLNYNFLDVEIPFQICN 134
N+ P L L +L L N L E+P + N
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNDL-TELPAGLLN 169
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 29.3 bits (64), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 41/89 (46%), Gaps = 6/89 (6%)
Query: 6 RSIPLEIGDLSKLQVLDLSSNHIVGEIRVQLGKLFSLNKLILNMNQLYGGMPLKLDSLTK 65
+S+PL L L VLD+S N + L L L +L L N+L P L K
Sbjct: 90 QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPK 149
Query: 66 LQYLDLSANKLWSLI------LENIDNLL 88
L+ L L+ N L L LEN+D LL
Sbjct: 150 LEKLSLANNNLTELPAGLLNGLENLDTLL 178
Score = 28.9 bits (63), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 46/98 (46%), Gaps = 2/98 (2%)
Query: 37 GKLFSLNKLILNMNQLYGGMPLKLDSLTKLQYLDLSANKLWSLILENIDNLLKLCYLNLS 96
G L L L L+ NQL +PL +L L LD+S N+L SL L + L +L L L
Sbjct: 74 GTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 97 NNQFIQKIPIELEKLIPLSELDLNYNFLDVEIPFQICN 134
N+ P L L +L L N L E+P + N
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNNL-TELPAGLLN 169
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 29.3 bits (64), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 41/89 (46%), Gaps = 6/89 (6%)
Query: 6 RSIPLEIGDLSKLQVLDLSSNHIVGEIRVQLGKLFSLNKLILNMNQLYGGMPLKLDSLTK 65
+S+PL L L VLD+S N + L L L +L L N+L P L K
Sbjct: 90 QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPK 149
Query: 66 LQYLDLSANKLWSLI------LENIDNLL 88
L+ L L+ N L L LEN+D LL
Sbjct: 150 LEKLSLANNNLTELPAGLLNGLENLDTLL 178
Score = 28.9 bits (63), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 46/98 (46%), Gaps = 2/98 (2%)
Query: 37 GKLFSLNKLILNMNQLYGGMPLKLDSLTKLQYLDLSANKLWSLILENIDNLLKLCYLNLS 96
G L L L L+ NQL +PL +L L LD+S N+L SL L + L +L L L
Sbjct: 74 GTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 97 NNQFIQKIPIELEKLIPLSELDLNYNFLDVEIPFQICN 134
N+ P L L +L L N L E+P + N
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNNL-TELPAGLLN 169
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 27.3 bits (59), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 52/117 (44%), Gaps = 3/117 (2%)
Query: 15 LSKLQVLDLSSNHIVGEIRVQLGKLFSLNKLILNMNQLYGG-MPLKLDSLTKLQYLDLSA 73
L L LD+S H L SL L + N +P L L +LDLS
Sbjct: 420 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ 479
Query: 74 NKLWSLILENIDNLLKLCYLNLSNNQFIQKIPIEL-EKLIPLSELDLNYNFLDVEIP 129
+L L ++L L LN+++NQ ++ +P + ++L L ++ L+ N D P
Sbjct: 480 CQLEQLSPTAFNSLSSLQVLNMASNQ-LKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 535
Score = 26.6 bits (57), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 9 PLEIGDLSKLQVLDLSSNHIVGEIRVQLGKLFSLNKLILNMNQLYGGMPLKLDSLTK 65
P LS LQVL+++SN + +L SL K+ L+ N P ++D L++
Sbjct: 487 PTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP-RIDYLSR 542
>pdb|3BZ5|A Chain A, Functional Domain Of Inlj From Listeria Monocytogenes
Includes A Cysteine Ladder
Length = 457
Score = 26.9 bits (58), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 53/111 (47%), Gaps = 12/111 (10%)
Query: 12 IGDLSKLQVLDLSSNHIVGEIRVQLGKLFSLNKLILNMNQLYGGMPLKLDSLTKLQYLDL 71
I L+ L L +SN+I + L + +L L + N+L L + LTKL YL+
Sbjct: 60 IEKLTGLTKLICTSNNIT---TLDLSQNTNLTYLACDSNKLTN---LDVTPLTKLTYLNC 113
Query: 72 SANKLWSLILENIDNLLKLCYLNLSNNQFIQKIPIELEKLIPLSELDLNYN 122
NKL L + N L L YLN + N + I++ L+ELD + N
Sbjct: 114 DTNKLTKLDVSQ--NPL-LTYLNCARNTLTE---IDVSHNTQLTELDCHLN 158
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 26.9 bits (58), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
Query: 17 KLQVLDLSSNHIVGEIRVQLGKLFSLNKLILNMNQLYGGMPLKLDSLTKLQYLDLSANKL 76
K++VLDL +N I+ I + L +L +L + NQL D LT LQY+ L N
Sbjct: 451 KVKVLDLHNNRIMS-IPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNP- 508
Query: 77 WSLILENI 84
W I
Sbjct: 509 WDCTCPGI 516
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 26.9 bits (58), Expect = 4.1, Method: Composition-based stats.
Identities = 26/92 (28%), Positives = 42/92 (45%), Gaps = 2/92 (2%)
Query: 11 EIGDLSKLQVLDLSSNHIVGEIRVQLGKLFSLNKLILNMNQLYGGMPLKL-DSLTKLQYL 69
E L+ L+L+ N + LF+L L L N+L +PL + L+ L L
Sbjct: 51 EFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRL-KLIPLGVFTGLSNLTKL 109
Query: 70 DLSANKLWSLILENIDNLLKLCYLNLSNNQFI 101
D+S NK+ L+ +L L L + +N +
Sbjct: 110 DISENKIVILLDYMFQDLYNLKSLEVGDNDLV 141
>pdb|2ELL|A Chain A, Solution Structure Of The Leucine Rich Repeat Of Human
Acidic Leucine- Rich Nuclear Phosphoprotein 32 Family
Member B
pdb|2RR6|A Chain A, Solution Structure Of The Leucine Rich Repeat Of Human
Acidic Leucine- Rich Nuclear Phosphoprotein 32 Family
Member B
Length = 168
Score = 26.6 bits (57), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 47/87 (54%), Gaps = 5/87 (5%)
Query: 47 LNMNQLYGGMPLKLDSLTKLQYLDLSANKLWSL-ILENIDNLLKLCYLNLSNNQF--IQK 103
L+ N+++GG+ + + L L +L+LS NKL + LE + L L L+L N + +
Sbjct: 78 LSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLND 137
Query: 104 IPIELEKLIP-LSELDLNYNFLDVEIP 129
+ KL+P L+ LD Y+ D E P
Sbjct: 138 YRESVFKLLPQLTYLD-GYDREDQEAP 163
>pdb|2FGE|A Chain A, Crystal Structure Of Presequence Protease Prep From
Arabidopsis Thaliana
pdb|2FGE|B Chain B, Crystal Structure Of Presequence Protease Prep From
Arabidopsis Thaliana
Length = 995
Score = 26.6 bits (57), Expect = 4.8, Method: Composition-based stats.
Identities = 24/79 (30%), Positives = 40/79 (50%), Gaps = 12/79 (15%)
Query: 5 PRSIPLEIGDLSKLQVL--DLSSNHIV-GEIRVQLGKLFSLNKLILNMNQLYGGMPLKLD 61
P +P E+GD++ ++VL DL +N I+ E+ +G L ++L +PL
Sbjct: 549 PTYVPTEVGDINGVKVLRHDLFTNDIIYTEVVFDIGSL---------KHELLPLVPLFCQ 599
Query: 62 SLTKLQYLDLSANKLWSLI 80
SL + DL+ +L LI
Sbjct: 600 SLLEXGTKDLTFVQLNQLI 618
>pdb|1I6Z|A Chain A, Bag Domain Of Bag1 Cochaperone
Length = 135
Score = 26.6 bits (57), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 41/83 (49%), Gaps = 7/83 (8%)
Query: 6 RSIPLEIGDLSKLQVLDLSSNHIVGEIRVQLGKLFSLNKLILNMNQLYGGMPLKLDSLTK 65
+S P E +L KL+ L++S+ I ++ LNK + + Q + L+ ++L K
Sbjct: 11 KSNPEEEVELKKLKDLEVSAEKIANHLQ-------ELNKELSGIQQGFLAKELQAEALCK 63
Query: 66 LQYLDLSANKLWSLILENIDNLL 88
L + + + ILE ID ++
Sbjct: 64 LDRKVKATIEQFMKILEEIDTMV 86
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 25.8 bits (55), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Query: 12 IGDLSKLQVLDLSSNHIVGEIRVQLGKLFSLNKLILNMNQLYG-GMPLKLDSLTKLQYLD 70
LS LQ L ++ +G L +L +L + N + +P +LT L++LD
Sbjct: 97 FSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLD 156
Query: 71 LSANKLWSLILENI 84
LS+NK+ S+ ++
Sbjct: 157 LSSNKIQSIYCTDL 170
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 25.8 bits (55), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Query: 12 IGDLSKLQVLDLSSNHIVGEIRVQLGKLFSLNKLILNMNQLYG-GMPLKLDSLTKLQYLD 70
LS LQ L ++ +G L +L +L + N + +P +LT L++LD
Sbjct: 96 FSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLD 155
Query: 71 LSANKLWSLILENI 84
LS+NK+ S+ ++
Sbjct: 156 LSSNKIQSIYCTDL 169
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 25.8 bits (55), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Query: 12 IGDLSKLQVLDLSSNHIVGEIRVQLGKLFSLNKLILNMNQLYG-GMPLKLDSLTKLQYLD 70
LS LQ L ++ +G L +L +L + N + +P +LT L++LD
Sbjct: 98 FSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLD 157
Query: 71 LSANKLWSLILENI 84
LS+NK+ S+ ++
Sbjct: 158 LSSNKIQSIYCTDL 171
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 25.8 bits (55), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Query: 12 IGDLSKLQVLDLSSNHIVGEIRVQLGKLFSLNKLILNMNQLYG-GMPLKLDSLTKLQYLD 70
LS LQ L ++ +G L +L +L + N + +P +LT L++LD
Sbjct: 120 FSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLD 179
Query: 71 LSANKLWSLILENI 84
LS+NK+ S+ ++
Sbjct: 180 LSSNKIQSIYCTDL 193
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 25.8 bits (55), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Query: 12 IGDLSKLQVLDLSSNHIVGEIRVQLGKLFSLNKLILNMNQLYG-GMPLKLDSLTKLQYLD 70
LS LQ L ++ +G L +L +L + N + +P +LT L++LD
Sbjct: 96 FSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLD 155
Query: 71 LSANKLWSLILENI 84
LS+NK+ S+ ++
Sbjct: 156 LSSNKIQSIYCTDL 169
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 25.4 bits (54), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Query: 12 IGDLSKLQVLDLSSNHIVGEIRVQLGKLFSLNKLILNMNQLYG-GMPLKLDSLTKLQYLD 70
LS LQ L ++ +G L +L +L + N + +P +LT L++LD
Sbjct: 97 FSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLD 156
Query: 71 LSANKLWSLILENI 84
LS+NK+ S+ ++
Sbjct: 157 LSSNKIQSIYCTDL 170
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.141 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,819,379
Number of Sequences: 62578
Number of extensions: 143153
Number of successful extensions: 625
Number of sequences better than 100.0: 89
Number of HSP's better than 100.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 30
Number of HSP's that attempted gapping in prelim test: 331
Number of HSP's gapped (non-prelim): 255
length of query: 139
length of database: 14,973,337
effective HSP length: 89
effective length of query: 50
effective length of database: 9,403,895
effective search space: 470194750
effective search space used: 470194750
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 46 (22.3 bits)