Query 040935
Match_columns 139
No_of_seqs 104 out of 1585
Neff 11.2
Searched_HMMs 46136
Date Fri Mar 29 13:16:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040935.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040935hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 99.8 1.3E-18 2.9E-23 130.9 9.0 133 4-136 152-284 (968)
2 PLN00113 leucine-rich repeat r 99.8 2E-18 4.4E-23 129.9 9.1 137 2-138 174-310 (968)
3 KOG0617 Ras suppressor protein 99.7 1.5E-18 3.1E-23 104.8 -2.9 126 8-137 48-174 (264)
4 KOG4194 Membrane glycoprotein 99.6 4.3E-17 9.3E-22 113.8 0.4 135 1-135 302-439 (873)
5 KOG0617 Ras suppressor protein 99.6 1.4E-17 3.1E-22 100.5 -2.9 131 2-136 65-196 (264)
6 KOG4194 Membrane glycoprotein 99.5 2.5E-15 5.4E-20 105.2 2.0 124 2-125 183-330 (873)
7 KOG0472 Leucine-rich repeat pr 99.5 2.1E-15 4.5E-20 101.5 -2.5 128 2-135 170-297 (565)
8 KOG0472 Leucine-rich repeat pr 99.4 3.3E-14 7.3E-19 95.8 1.3 125 2-131 421-545 (565)
9 PF14580 LRR_9: Leucine-rich r 99.4 8.3E-13 1.8E-17 81.1 5.8 110 12-125 15-126 (175)
10 PLN03150 hypothetical protein; 99.4 2.8E-12 6E-17 93.0 8.4 107 18-124 420-527 (623)
11 PLN03150 hypothetical protein; 99.4 1.8E-12 4E-17 93.9 6.5 93 42-134 420-512 (623)
12 KOG0444 Cytoskeletal regulator 99.3 4.4E-13 9.5E-18 95.3 0.8 131 6-139 93-248 (1255)
13 KOG0444 Cytoskeletal regulator 99.3 1.3E-13 2.8E-18 98.0 -3.1 128 8-139 214-342 (1255)
14 KOG0532 Leucine-rich repeat (L 99.3 4.9E-13 1.1E-17 93.5 -1.0 129 4-139 109-237 (722)
15 KOG4237 Extracellular matrix p 99.2 7.5E-13 1.6E-17 89.0 -0.9 121 17-138 68-190 (498)
16 PF13855 LRR_8: Leucine rich r 99.2 3.1E-11 6.7E-16 61.9 3.7 15 38-52 23-37 (61)
17 PF13855 LRR_8: Leucine rich r 99.2 5.7E-11 1.2E-15 60.9 4.6 61 40-100 1-61 (61)
18 PF14580 LRR_9: Leucine-rich r 99.2 5.1E-11 1.1E-15 73.3 5.0 103 14-119 40-147 (175)
19 KOG0618 Serine/threonine phosp 99.1 4.1E-11 8.9E-16 87.9 1.2 119 2-123 369-487 (1081)
20 cd00116 LRR_RI Leucine-rich re 99.0 1.2E-10 2.5E-15 78.2 2.5 67 11-77 76-150 (319)
21 PLN03210 Resistant to P. syrin 99.0 2E-09 4.4E-14 83.1 9.2 105 15-122 610-714 (1153)
22 KOG4237 Extracellular matrix p 99.0 1.5E-11 3.2E-16 82.9 -2.9 121 2-123 77-199 (498)
23 PLN03210 Resistant to P. syrin 99.0 4.1E-09 8.9E-14 81.5 9.1 116 18-138 591-706 (1153)
24 KOG0618 Serine/threonine phosp 99.0 4.4E-11 9.4E-16 87.8 -1.5 110 14-126 357-466 (1081)
25 cd00116 LRR_RI Leucine-rich re 99.0 1.7E-10 3.8E-15 77.3 1.0 108 18-125 110-234 (319)
26 KOG1259 Nischarin, modulator o 98.9 2.6E-10 5.7E-15 75.0 0.2 114 11-130 302-416 (490)
27 PRK15387 E3 ubiquitin-protein 98.8 1.3E-08 2.8E-13 75.3 5.2 107 16-132 342-465 (788)
28 PRK15370 E3 ubiquitin-protein 98.7 3.1E-08 6.6E-13 73.4 5.1 38 89-130 347-384 (754)
29 KOG1259 Nischarin, modulator o 98.7 3.5E-09 7.7E-14 69.8 0.1 120 12-138 280-401 (490)
30 PRK15370 E3 ubiquitin-protein 98.7 5E-08 1.1E-12 72.3 5.8 62 64-132 346-407 (754)
31 PRK15387 E3 ubiquitin-protein 98.6 1.9E-07 4.2E-12 69.3 8.2 86 7-102 215-316 (788)
32 KOG0532 Leucine-rich repeat (L 98.6 4.3E-10 9.3E-15 79.1 -5.9 124 7-136 89-212 (722)
33 KOG4658 Apoptotic ATPase [Sign 98.5 1.5E-07 3.3E-12 70.9 4.2 106 16-122 545-652 (889)
34 KOG1644 U2-associated snRNP A' 98.4 4.5E-07 9.7E-12 56.6 4.2 100 19-120 45-148 (233)
35 COG4886 Leucine-rich repeat (L 98.4 1.9E-07 4.1E-12 64.7 2.6 82 16-100 116-198 (394)
36 COG4886 Leucine-rich repeat (L 98.4 3.1E-07 6.7E-12 63.7 3.2 123 9-137 132-278 (394)
37 PF12799 LRR_4: Leucine Rich r 98.4 5.8E-07 1.2E-11 42.7 3.0 36 89-125 2-37 (44)
38 KOG1859 Leucine-rich repeat pr 98.3 1.3E-08 2.8E-13 74.0 -4.7 110 10-125 181-292 (1096)
39 PF13306 LRR_5: Leucine rich r 98.3 5.2E-06 1.1E-10 48.6 6.8 125 9-139 5-129 (129)
40 KOG4579 Leucine-rich repeat (L 98.3 6.2E-08 1.3E-12 57.0 -1.5 108 17-129 28-139 (177)
41 KOG4658 Apoptotic ATPase [Sign 98.3 1.1E-06 2.3E-11 66.4 4.3 124 13-139 520-645 (889)
42 KOG1644 U2-associated snRNP A' 98.2 3.7E-06 8E-11 52.6 4.7 104 18-125 21-126 (233)
43 PF12799 LRR_4: Leucine Rich r 98.2 2.9E-06 6.2E-11 40.3 3.0 35 17-52 2-36 (44)
44 KOG0531 Protein phosphatase 1, 98.1 7.6E-07 1.6E-11 62.3 1.0 109 11-125 90-199 (414)
45 KOG1909 Ran GTPase-activating 98.1 1.2E-06 2.5E-11 58.8 1.4 111 14-124 183-310 (382)
46 KOG1859 Leucine-rich repeat pr 98.0 2.1E-07 4.5E-12 68.0 -3.2 104 16-125 164-267 (1096)
47 KOG4579 Leucine-rich repeat (L 98.0 6.2E-07 1.3E-11 52.9 -0.9 82 16-100 53-135 (177)
48 KOG3207 Beta-tubulin folding c 98.0 2.1E-06 4.5E-11 59.3 0.9 88 11-98 141-232 (505)
49 KOG1909 Ran GTPase-activating 98.0 1.4E-06 3E-11 58.5 -0.4 14 14-27 90-103 (382)
50 KOG2739 Leucine-rich acidic nu 97.9 1E-05 2.2E-10 52.4 2.8 113 8-122 35-153 (260)
51 KOG2123 Uncharacterized conser 97.8 1.3E-06 2.9E-11 57.3 -2.3 101 14-118 17-123 (388)
52 KOG0531 Protein phosphatase 1, 97.8 3.3E-06 7.1E-11 59.1 -0.9 107 15-127 71-177 (414)
53 KOG3207 Beta-tubulin folding c 97.7 5.8E-06 1.3E-10 57.2 -0.7 110 16-125 197-314 (505)
54 KOG3665 ZYG-1-like serine/thre 97.7 4.4E-05 9.6E-10 56.7 3.5 109 15-125 147-263 (699)
55 KOG3665 ZYG-1-like serine/thre 97.7 3.1E-05 6.7E-10 57.5 2.6 108 16-125 122-233 (699)
56 COG5238 RNA1 Ran GTPase-activa 97.6 0.00015 3.2E-09 47.9 5.0 116 10-125 86-227 (388)
57 PF00560 LRR_1: Leucine Rich R 97.5 4.1E-05 9E-10 30.6 1.1 22 113-135 1-22 (22)
58 PF13306 LRR_5: Leucine rich r 97.3 0.0014 3E-08 38.2 6.1 103 7-114 26-128 (129)
59 PRK15386 type III secretion pr 97.2 0.0014 3E-08 45.9 5.9 55 13-74 49-104 (426)
60 KOG2982 Uncharacterized conser 96.8 0.00059 1.3E-08 45.7 1.2 86 15-100 70-158 (418)
61 KOG2739 Leucine-rich acidic nu 96.7 0.00087 1.9E-08 43.7 1.7 88 11-98 60-153 (260)
62 COG5238 RNA1 Ran GTPase-activa 96.5 0.001 2.2E-08 44.1 0.8 117 10-126 114-256 (388)
63 KOG2123 Uncharacterized conser 96.4 0.00029 6.3E-09 46.7 -2.1 81 12-94 37-123 (388)
64 PF13504 LRR_7: Leucine rich r 96.4 0.0026 5.7E-08 23.6 1.3 16 113-129 2-17 (17)
65 KOG2982 Uncharacterized conser 96.3 0.0012 2.5E-08 44.3 0.4 85 39-123 70-157 (418)
66 KOG2120 SCF ubiquitin ligase, 95.7 0.0016 3.4E-08 43.8 -1.1 40 13-52 231-272 (419)
67 smart00369 LRR_TYP Leucine-ric 95.7 0.01 2.3E-07 24.4 1.7 20 112-132 2-21 (26)
68 smart00370 LRR Leucine-rich re 95.7 0.01 2.3E-07 24.4 1.7 20 112-132 2-21 (26)
69 KOG2120 SCF ubiquitin ligase, 95.5 0.0018 3.9E-08 43.5 -1.4 109 12-122 256-373 (419)
70 PRK15386 type III secretion pr 95.5 0.039 8.5E-07 38.9 5.0 87 35-135 47-137 (426)
71 PF13516 LRR_6: Leucine Rich r 95.5 0.0025 5.5E-08 25.8 -0.6 19 112-130 2-20 (24)
72 KOG3864 Uncharacterized conser 95.0 0.008 1.7E-07 38.1 0.4 81 41-121 102-185 (221)
73 KOG3864 Uncharacterized conser 94.9 0.0044 9.5E-08 39.2 -1.0 36 64-99 101-136 (221)
74 KOG0473 Leucine-rich repeat pr 92.3 0.0024 5.1E-08 41.5 -5.4 87 39-128 41-127 (326)
75 KOG1947 Leucine rich repeat pr 92.2 0.11 2.4E-06 36.9 2.2 109 15-123 187-306 (482)
76 smart00364 LRR_BAC Leucine-ric 92.1 0.11 2.4E-06 21.5 1.2 18 112-130 2-19 (26)
77 KOG0473 Leucine-rich repeat pr 90.5 0.0091 2E-07 38.9 -4.2 75 61-138 39-113 (326)
78 smart00368 LRR_RI Leucine rich 88.2 0.44 9.6E-06 19.9 1.5 15 112-126 2-16 (28)
79 smart00365 LRR_SD22 Leucine-ri 87.9 0.53 1.1E-05 19.4 1.6 14 112-125 2-15 (26)
80 KOG3763 mRNA export factor TAP 76.2 2.5 5.5E-05 31.2 2.3 12 63-74 243-254 (585)
81 KOG1947 Leucine rich repeat pr 71.0 3.9 8.5E-05 29.2 2.3 88 13-100 211-307 (482)
82 KOG3763 mRNA export factor TAP 64.7 4.7 0.0001 29.9 1.6 11 88-98 244-254 (585)
83 smart00367 LRR_CC Leucine-rich 61.0 6.6 0.00014 15.7 1.2 16 111-126 1-17 (26)
84 KOG4341 F-box protein containi 58.2 10 0.00022 27.5 2.3 36 87-122 400-436 (483)
85 TIGR00864 PCC polycystin catio 55.7 8.6 0.00019 34.2 1.9 32 46-77 1-32 (2740)
86 TIGR00864 PCC polycystin catio 41.3 17 0.00036 32.6 1.5 31 22-52 1-31 (2740)
87 smart00446 LRRcap occurring C- 24.7 44 0.00095 13.8 0.7 14 107-120 8-21 (26)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.77 E-value=1.3e-18 Score=130.86 Aligned_cols=133 Identities=37% Similarity=0.460 Sum_probs=63.6
Q ss_pred ccccCCccccCCCCccEEEccCCcceeechhhhccccccceeEeeccccccCcCccccCCCCccEEEccCCcccccchHh
Q 040935 4 IPRSIPLEIGDLSKLQVLDLSSNHIVGEIRVQLGKLFSLNKLILNMNQLYGGMPLKLDSLTKLQYLDLSANKLWSLILEN 83 (139)
Q Consensus 4 ~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~ 83 (139)
+.+.+|..+..+++|++|++.+|.+.+..|..+..+++|+.|++++|.+.+..|..++.+.+|+++++.+|.+.+..+..
T Consensus 152 ~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~ 231 (968)
T PLN00113 152 LSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYE 231 (968)
T ss_pred ccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChh
Confidence 33444444555555555555555544444444555555555555555544444444444445555555554444444444
Q ss_pred hhccccccEEecCCCcccccCchhhhccCCCCeEEccCcccccccCccccCcC
Q 040935 84 IDNLLKLCYLNLSNNQFIQKIPIELEKLIPLSELDLNYNFLDVEIPFQICNMK 136 (139)
Q Consensus 84 ~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~p~~~~~~~ 136 (139)
+..+++|++|++.+|.+++.+|..++.+++|+.|++++|.+.+.+|..+++++
T Consensus 232 l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~ 284 (968)
T PLN00113 232 IGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQ 284 (968)
T ss_pred HhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhcc
Confidence 44444444444444444444444444444444444444444444444443333
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.77 E-value=2e-18 Score=129.89 Aligned_cols=137 Identities=36% Similarity=0.501 Sum_probs=84.9
Q ss_pred CCccccCCccccCCCCccEEEccCCcceeechhhhccccccceeEeeccccccCcCccccCCCCccEEEccCCcccccch
Q 040935 2 NNIPRSIPLEIGDLSKLQVLDLSSNHIVGEIRVQLGKLFSLNKLILNMNQLYGGMPLKLDSLTKLQYLDLSANKLWSLIL 81 (139)
Q Consensus 2 n~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~ 81 (139)
|.+.+.+|..+.++++|++|++.+|.+.+..|..+..+.+|+.+++++|.+.+..|..++.+++|+++++.+|.+.+..+
T Consensus 174 n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p 253 (968)
T PLN00113 174 NVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIP 253 (968)
T ss_pred CcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccC
Confidence 44555666666666777777776666665666666666666666666666655566666666666666666666655555
Q ss_pred HhhhccccccEEecCCCcccccCchhhhccCCCCeEEccCcccccccCccccCcCCC
Q 040935 82 ENIDNLLKLCYLNLSNNQFIQKIPIELEKLIPLSELDLNYNFLDVEIPFQICNMKSL 138 (139)
Q Consensus 82 ~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~p~~~~~~~~L 138 (139)
..+..+++|+.|++.+|.+++..|..+..+++|+.|++++|.+.+.+|..+..+++|
T Consensus 254 ~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L 310 (968)
T PLN00113 254 SSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNL 310 (968)
T ss_pred hhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCC
Confidence 556666666666666666655555555555566666666665555555555555444
No 3
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.67 E-value=1.5e-18 Score=104.76 Aligned_cols=126 Identities=33% Similarity=0.446 Sum_probs=85.6
Q ss_pred CCccccCCCCccEEEccCCcceeechhhhccccccceeEeeccccccCcCccccCCCCccEEEccCCcccc-cchHhhhc
Q 040935 8 IPLEIGDLSKLQVLDLSSNHIVGEIRVQLGKLFSLNKLILNMNQLYGGMPLKLDSLTKLQYLDLSANKLWS-LILENIDN 86 (139)
Q Consensus 8 ~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~-~~~~~~~~ 86 (139)
.|+.++.+.+|+.|++.+|+++ ++|..++.++.|+.+.++.|++ ...|..|+.++-|+.++++-|++.. ..|..|..
T Consensus 48 vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl-~~lprgfgs~p~levldltynnl~e~~lpgnff~ 125 (264)
T KOG0617|consen 48 VPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRL-NILPRGFGSFPALEVLDLTYNNLNENSLPGNFFY 125 (264)
T ss_pred cCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhh-hcCccccCCCchhhhhhccccccccccCCcchhH
Confidence 3556677777777777777776 6777777777777777777777 5667777777777777777666653 34555555
Q ss_pred cccccEEecCCCcccccCchhhhccCCCCeEEccCcccccccCccccCcCC
Q 040935 87 LLKLCYLNLSNNQFIQKIPIELEKLIPLSELDLNYNFLDVEIPFQICNMKS 137 (139)
Q Consensus 87 ~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~p~~~~~~~~ 137 (139)
+..|+.+.+++|.+ +.+|..++.+++|+.|.+++|.+- .+|.+++.+..
T Consensus 126 m~tlralyl~dndf-e~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~ 174 (264)
T KOG0617|consen 126 MTTLRALYLGDNDF-EILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTR 174 (264)
T ss_pred HHHHHHHHhcCCCc-ccCChhhhhhcceeEEeeccCchh-hCcHHHHHHHH
Confidence 66666666666665 455666666666666666666665 66666655443
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.63 E-value=4.3e-17 Score=113.81 Aligned_cols=135 Identities=29% Similarity=0.205 Sum_probs=112.4
Q ss_pred CCCccccCCccccCCCCccEEEccCCcceeechhhhccccccceeEeeccccccCcCccccCCCCccEEEccCCcccccc
Q 040935 1 MNNIPRSIPLEIGDLSKLQVLDLSSNHIVGEIRVQLGKLFSLNKLILNMNQLYGGMPLKLDSLTKLQYLDLSANKLWSLI 80 (139)
Q Consensus 1 ~n~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~ 80 (139)
+|.|....++++..+..|+.|++++|.++...++.|..+..|+.|.++.|++.......|.++.+|+.+++.+|.+++..
T Consensus 302 ~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~I 381 (873)
T KOG4194|consen 302 YNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCI 381 (873)
T ss_pred hhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEE
Confidence 46777777888888888888888888888777778888888888888888887777778888889999999999888765
Q ss_pred hH---hhhccccccEEecCCCcccccCchhhhccCCCCeEEccCcccccccCccccCc
Q 040935 81 LE---NIDNLLKLCYLNLSNNQFIQKIPIELEKLIPLSELDLNYNFLDVEIPFQICNM 135 (139)
Q Consensus 81 ~~---~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~p~~~~~~ 135 (139)
.+ .|.++++|+.|.+.+|++.....+.+.++..|++|++.+|.+...-|+.|..+
T Consensus 382 EDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m 439 (873)
T KOG4194|consen 382 EDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM 439 (873)
T ss_pred ecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc
Confidence 43 46678999999999999966666689999999999999999987778877765
No 5
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.61 E-value=1.4e-17 Score=100.49 Aligned_cols=131 Identities=28% Similarity=0.401 Sum_probs=115.5
Q ss_pred CCccccCCccccCCCCccEEEccCCcceeechhhhccccccceeEeecccccc-CcCccccCCCCccEEEccCCcccccc
Q 040935 2 NNIPRSIPLEIGDLSKLQVLDLSSNHIVGEIRVQLGKLFSLNKLILNMNQLYG-GMPLKLDSLTKLQYLDLSANKLWSLI 80 (139)
Q Consensus 2 n~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~-~~~~~~~~~~~L~~l~l~~n~~~~~~ 80 (139)
|.--..+|.+++.++.|++|++.-|++. ..|..|..++.|+++|+.+|.+.. .+|..|..+..|+.+.+++|.+...+
T Consensus 65 nnqie~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp 143 (264)
T KOG0617|consen 65 NNQIEELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILP 143 (264)
T ss_pred cchhhhcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCC
Confidence 3344568889999999999999999998 899999999999999999998864 67999999999999999999996655
Q ss_pred hHhhhccccccEEecCCCcccccCchhhhccCCCCeEEccCcccccccCccccCcC
Q 040935 81 LENIDNLLKLCYLNLSNNQFIQKIPIELEKLIPLSELDLNYNFLDVEIPFQICNMK 136 (139)
Q Consensus 81 ~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~p~~~~~~~ 136 (139)
++ .+.+++|+.+.+++|.+ -.+|++++.+++|+.|.+.+|.++ .+|++++.+.
T Consensus 144 ~d-vg~lt~lqil~lrdndl-l~lpkeig~lt~lrelhiqgnrl~-vlppel~~l~ 196 (264)
T KOG0617|consen 144 PD-VGKLTNLQILSLRDNDL-LSLPKEIGDLTRLRELHIQGNRLT-VLPPELANLD 196 (264)
T ss_pred hh-hhhhcceeEEeeccCch-hhCcHHHHHHHHHHHHhcccceee-ecChhhhhhh
Confidence 44 88999999999999988 468999999999999999999998 8888887654
No 6
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.53 E-value=2.5e-15 Score=105.19 Aligned_cols=124 Identities=28% Similarity=0.203 Sum_probs=59.2
Q ss_pred CCccccCCccccCCCCccEEEccCCcceeechhhhccccccceeEeeccccccCcCccccCCCCccEEEccCCc------
Q 040935 2 NNIPRSIPLEIGDLSKLQVLDLSSNHIVGEIRVQLGKLFSLNKLILNMNQLYGGMPLKLDSLTKLQYLDLSANK------ 75 (139)
Q Consensus 2 n~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~------ 75 (139)
|.|+...-..|.++.+|..|.++.|+++...+..|+.+++|+.|++..|.+....--.|+.+++|+.+.+.+|.
T Consensus 183 N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~D 262 (873)
T KOG4194|consen 183 NRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDD 262 (873)
T ss_pred ccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccC
Confidence 33444444445555555555555555554444455555555555555555522222333444444444444444
Q ss_pred ------------------ccccchHhhhccccccEEecCCCcccccCchhhhccCCCCeEEccCcccc
Q 040935 76 ------------------LWSLILENIDNLLKLCYLNLSNNQFIQKIPIELEKLIPLSELDLNYNFLD 125 (139)
Q Consensus 76 ------------------~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~l~ 125 (139)
+..+-..++.++..|++|++++|.+...-+..|..+++|+.|+++.|.++
T Consensus 263 G~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~ 330 (873)
T KOG4194|consen 263 GAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRIT 330 (873)
T ss_pred cceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccc
Confidence 44333333444444555555555444444444555555555555555555
No 7
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.46 E-value=2.1e-15 Score=101.48 Aligned_cols=128 Identities=28% Similarity=0.407 Sum_probs=104.6
Q ss_pred CCccccCCccccCCCCccEEEccCCcceeechhhhccccccceeEeeccccccCcCccccCCCCccEEEccCCcccccch
Q 040935 2 NNIPRSIPLEIGDLSKLQVLDLSSNHIVGEIRVQLGKLFSLNKLILNMNQLYGGMPLKLDSLTKLQYLDLSANKLWSLIL 81 (139)
Q Consensus 2 n~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~ 81 (139)
|++....|..+. |+.|++++...|-++ .+|+.+..+.+|..+++..|.+ ...| .|..+..|.++.++.|++.....
T Consensus 170 n~l~~l~~~~i~-m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki-~~lP-ef~gcs~L~Elh~g~N~i~~lpa 245 (565)
T KOG0472|consen 170 NKLKALPENHIA-MKRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRNKI-RFLP-EFPGCSLLKELHVGENQIEMLPA 245 (565)
T ss_pred cchhhCCHHHHH-HHHHHhcccchhhhh-cCChhhcchhhhHHHHhhhccc-ccCC-CCCccHHHHHHHhcccHHHhhHH
Confidence 444444444444 888888888888876 6777888888888888888888 4556 77788888888999999877766
Q ss_pred HhhhccccccEEecCCCcccccCchhhhccCCCCeEEccCcccccccCccccCc
Q 040935 82 ENIDNLLKLCYLNLSNNQFIQKIPIELEKLIPLSELDLNYNFLDVEIPFQICNM 135 (139)
Q Consensus 82 ~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~p~~~~~~ 135 (139)
.....++.+..+|+++|.++ ..|.++.-+++|+.||+++|.++ .+|.+++++
T Consensus 246 e~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is-~Lp~sLgnl 297 (565)
T KOG0472|consen 246 EHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDIS-SLPYSLGNL 297 (565)
T ss_pred HHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccc-cCCcccccc
Confidence 76778999999999999994 57888888999999999999998 889999987
No 8
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.43 E-value=3.3e-14 Score=95.76 Aligned_cols=125 Identities=34% Similarity=0.449 Sum_probs=109.2
Q ss_pred CCccccCCccccCCCCccEEEccCCcceeechhhhccccccceeEeeccccccCcCccccCCCCccEEEccCCcccccch
Q 040935 2 NNIPRSIPLEIGDLSKLQVLDLSSNHIVGEIRVQLGKLFSLNKLILNMNQLYGGMPLKLDSLTKLQYLDLSANKLWSLIL 81 (139)
Q Consensus 2 n~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~ 81 (139)
|+..+..|..++.+++++.|++++|.+. .+|..+..+..|+.++++.|++ ...|.....+..++.+-.++|++..+.+
T Consensus 421 nn~isfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrF-r~lP~~~y~lq~lEtllas~nqi~~vd~ 498 (565)
T KOG0472|consen 421 NNKISFVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRF-RMLPECLYELQTLETLLASNNQIGSVDP 498 (565)
T ss_pred cCccccchHHHHhhhcceeeecccchhh-hcchhhhhhhhhheeccccccc-ccchHHHhhHHHHHHHHhccccccccCh
Confidence 3455566778888999999999999998 7888888999999999999998 7778877777778888778899999999
Q ss_pred HhhhccccccEEecCCCcccccCchhhhccCCCCeEEccCcccccccCcc
Q 040935 82 ENIDNLLKLCYLNLSNNQFIQKIPIELEKLIPLSELDLNYNFLDVEIPFQ 131 (139)
Q Consensus 82 ~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~p~~ 131 (139)
+.+.++.+|.++++++|.+ ..+|..++.+++|++|++.+|+|+ .|++
T Consensus 499 ~~l~nm~nL~tLDL~nNdl-q~IPp~LgnmtnL~hLeL~gNpfr--~Pr~ 545 (565)
T KOG0472|consen 499 SGLKNMRNLTTLDLQNNDL-QQIPPILGNMTNLRHLELDGNPFR--QPRH 545 (565)
T ss_pred HHhhhhhhcceeccCCCch-hhCChhhccccceeEEEecCCccC--CCHH
Confidence 9899999999999999999 678889999999999999999996 5543
No 9
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.40 E-value=8.3e-13 Score=81.12 Aligned_cols=110 Identities=35% Similarity=0.286 Sum_probs=41.5
Q ss_pred ccCCCCccEEEccCCcceeechhhhc-cccccceeEeeccccccCcCccccCCCCccEEEccCCcccccchHhhhccccc
Q 040935 12 IGDLSKLQVLDLSSNHIVGEIRVQLG-KLFSLNKLILNMNQLYGGMPLKLDSLTKLQYLDLSANKLWSLILENIDNLLKL 90 (139)
Q Consensus 12 ~~~l~~L~~l~l~~~~~~~~~~~~~~-~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L 90 (139)
+.+...++.|++.++.++. .. .+. .+.+++.+++++|.+... +.+..+++|+++++.+|.++.........+++|
T Consensus 15 ~~n~~~~~~L~L~~n~I~~-Ie-~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L 90 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQIST-IE-NLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISSISEGLDKNLPNL 90 (175)
T ss_dssp -----------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S-CHHHHHH-TT-
T ss_pred ccccccccccccccccccc-cc-chhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCccccchHHhCCcC
Confidence 3455668889999999873 33 344 477899999999998543 346778899999999999987654433467899
Q ss_pred cEEecCCCcccccC-chhhhccCCCCeEEccCcccc
Q 040935 91 CYLNLSNNQFIQKI-PIELEKLIPLSELDLNYNFLD 125 (139)
Q Consensus 91 ~~l~l~~n~~~~~~-~~~~~~~~~L~~l~l~~n~l~ 125 (139)
+.|.+++|.+.+.- ...++.+++|+.|++.+|+++
T Consensus 91 ~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 91 QELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp -EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred CEEECcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence 99999999886532 245788899999999999987
No 10
>PLN03150 hypothetical protein; Provisional
Probab=99.38 E-value=2.8e-12 Score=93.01 Aligned_cols=107 Identities=29% Similarity=0.380 Sum_probs=90.0
Q ss_pred ccEEEccCCcceeechhhhccccccceeEeeccccccCcCccccCCCCccEEEccCCcccccchHhhhccccccEEecCC
Q 040935 18 LQVLDLSSNHIVGEIRVQLGKLFSLNKLILNMNQLYGGMPLKLDSLTKLQYLDLSANKLWSLILENIDNLLKLCYLNLSN 97 (139)
Q Consensus 18 L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~ 97 (139)
++.|++.++.+.+..|..+..+++|+.|++++|.+.+..|..++.+++|+.|++++|.+.+..|+.++.+++|+.|++.+
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 66788888888888888888889999999999988878888888888999999999998888888888889999999999
Q ss_pred CcccccCchhhhcc-CCCCeEEccCccc
Q 040935 98 NQFIQKIPIELEKL-IPLSELDLNYNFL 124 (139)
Q Consensus 98 n~~~~~~~~~~~~~-~~L~~l~l~~n~l 124 (139)
|.+++.+|..++.. ..+..+++.+|..
T Consensus 500 N~l~g~iP~~l~~~~~~~~~l~~~~N~~ 527 (623)
T PLN03150 500 NSLSGRVPAALGGRLLHRASFNFTDNAG 527 (623)
T ss_pred CcccccCChHHhhccccCceEEecCCcc
Confidence 98888888877654 3567788888753
No 11
>PLN03150 hypothetical protein; Provisional
Probab=99.36 E-value=1.8e-12 Score=93.92 Aligned_cols=93 Identities=31% Similarity=0.401 Sum_probs=86.9
Q ss_pred cceeEeeccccccCcCccccCCCCccEEEccCCcccccchHhhhccccccEEecCCCcccccCchhhhccCCCCeEEccC
Q 040935 42 LNKLILNMNQLYGGMPLKLDSLTKLQYLDLSANKLWSLILENIDNLLKLCYLNLSNNQFIQKIPIELEKLIPLSELDLNY 121 (139)
Q Consensus 42 L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~ 121 (139)
++.+++++|.+.+..|..++.+++|+.|++++|.+.+..|..+..++.|+.|++.+|.+++.+|..++.+++|+.|++++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 66789999999888999999999999999999999988888899999999999999999999999999999999999999
Q ss_pred cccccccCccccC
Q 040935 122 NFLDVEIPFQICN 134 (139)
Q Consensus 122 n~l~~~~p~~~~~ 134 (139)
|.+++.+|..++.
T Consensus 500 N~l~g~iP~~l~~ 512 (623)
T PLN03150 500 NSLSGRVPAALGG 512 (623)
T ss_pred CcccccCChHHhh
Confidence 9999999987765
No 12
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.30 E-value=4.4e-13 Score=95.34 Aligned_cols=131 Identities=34% Similarity=0.383 Sum_probs=101.1
Q ss_pred ccCCccccCCCCccEEEccCCcceeechhhhccccccceeEeeccccccCcCccccCCCCccEEEccCCcccccchHhhh
Q 040935 6 RSIPLEIGDLSKLQVLDLSSNHIVGEIRVQLGKLFSLNKLILNMNQLYGGMPLKLDSLTKLQYLDLSANKLWSLILENID 85 (139)
Q Consensus 6 ~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~ 85 (139)
..+|+.+..+..|+.|++++|++. +.|..+..-.++.+|.+++|.|.++.-..|-+++.|.++++++|++...+|. ..
T Consensus 93 sGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ-~R 170 (1255)
T KOG0444|consen 93 SGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQ-IR 170 (1255)
T ss_pred CCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhhcCHH-HH
Confidence 346888889999999999999998 8888888888999999999999544334456788889999999998666444 66
Q ss_pred ccccccEEecCCCccc-------------------------ccCchhhhccCCCCeEEccCcccccccCccccCcCCCC
Q 040935 86 NLLKLCYLNLSNNQFI-------------------------QKIPIELEKLIPLSELDLNYNFLDVEIPFQICNMKSLE 139 (139)
Q Consensus 86 ~~~~L~~l~l~~n~~~-------------------------~~~~~~~~~~~~L~~l~l~~n~l~~~~p~~~~~~~~L~ 139 (139)
.+..|++|.+.+|++. ..+|..+-.+.+|..+|++.|.+. .+|+++.++++|+
T Consensus 171 RL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~Lr 248 (1255)
T KOG0444|consen 171 RLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLR 248 (1255)
T ss_pred HHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhh
Confidence 6777777777777552 235556667777788888888887 8888888777663
No 13
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.28 E-value=1.3e-13 Score=97.97 Aligned_cols=128 Identities=30% Similarity=0.420 Sum_probs=90.4
Q ss_pred CCccccCCCCccEEEccCCcceeechhhhccccccceeEeeccccccCcCccccCCCCccEEEccCCcccccchHhhhcc
Q 040935 8 IPLEIGDLSKLQVLDLSSNHIVGEIRVQLGKLFSLNKLILNMNQLYGGMPLKLDSLTKLQYLDLSANKLWSLILENIDNL 87 (139)
Q Consensus 8 ~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~ 87 (139)
+|.++..+.+|..++++.|.+. ..|.++-.+.+|+.|.+++|.++ .+.-..+.+-+++++++++|+++ ..|+.+..+
T Consensus 214 ~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL 290 (1255)
T KOG0444|consen 214 IPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLT-VLPDAVCKL 290 (1255)
T ss_pred CCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhc-cchHHHhhh
Confidence 5667777777777777777776 67777777777777777777773 33333345566777777777774 346667777
Q ss_pred ccccEEecCCCccc-ccCchhhhccCCCCeEEccCcccccccCccccCcCCCC
Q 040935 88 LKLCYLNLSNNQFI-QKIPIELEKLIPLSELDLNYNFLDVEIPFQICNMKSLE 139 (139)
Q Consensus 88 ~~L~~l~l~~n~~~-~~~~~~~~~~~~L~~l~l~~n~l~~~~p~~~~~~~~L~ 139 (139)
+.|+.|.+.+|.++ +.+|+.++.+.+|+++..++|.+. -.|+++|+|..|+
T Consensus 291 ~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~ 342 (1255)
T KOG0444|consen 291 TKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQ 342 (1255)
T ss_pred HHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHH
Confidence 77777777777664 346777777778888877777776 7788888777653
No 14
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.26 E-value=4.9e-13 Score=93.46 Aligned_cols=129 Identities=35% Similarity=0.494 Sum_probs=108.9
Q ss_pred ccccCCccccCCCCccEEEccCCcceeechhhhccccccceeEeeccccccCcCccccCCCCccEEEccCCcccccchHh
Q 040935 4 IPRSIPLEIGDLSKLQVLDLSSNHIVGEIRVQLGKLFSLNKLILNMNQLYGGMPLKLDSLTKLQYLDLSANKLWSLILEN 83 (139)
Q Consensus 4 ~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~ 83 (139)
....+|.+++.+..|++++++.|+++ .+|..+..++ |+.+.+++|++ +.+|..++....|..++.+.|.+... +..
T Consensus 109 ~~r~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sNNkl-~~lp~~ig~~~tl~~ld~s~nei~sl-psq 184 (722)
T KOG0532|consen 109 CIRTIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSNNKL-TSLPEEIGLLPTLAHLDVSKNEIQSL-PSQ 184 (722)
T ss_pred cceecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEecCcc-ccCCcccccchhHHHhhhhhhhhhhc-hHH
Confidence 34567888999999999999999998 6777766655 88999999998 78888888888999999999999765 555
Q ss_pred hhccccccEEecCCCcccccCchhhhccCCCCeEEccCcccccccCccccCcCCCC
Q 040935 84 IDNLLKLCYLNLSNNQFIQKIPIELEKLIPLSELDLNYNFLDVEIPFQICNMKSLE 139 (139)
Q Consensus 84 ~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~p~~~~~~~~L~ 139 (139)
++.+.+|+.+.++.|.+ ..+|.++..+ .|..||++.|+++ .+|-+|++|+.||
T Consensus 185 l~~l~slr~l~vrRn~l-~~lp~El~~L-pLi~lDfScNkis-~iPv~fr~m~~Lq 237 (722)
T KOG0532|consen 185 LGYLTSLRDLNVRRNHL-EDLPEELCSL-PLIRLDFSCNKIS-YLPVDFRKMRHLQ 237 (722)
T ss_pred hhhHHHHHHHHHhhhhh-hhCCHHHhCC-ceeeeecccCcee-ecchhhhhhhhhe
Confidence 88899999999999988 4567777744 6889999999998 9999999999886
No 15
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.24 E-value=7.5e-13 Score=89.00 Aligned_cols=121 Identities=24% Similarity=0.155 Sum_probs=101.8
Q ss_pred CccEEEccCCcceeechhhhccccccceeEeeccccccCcCccccCCCCccEEEccC-CcccccchHhhhccccccEEec
Q 040935 17 KLQVLDLSSNHIVGEIRVQLGKLFSLNKLILNMNQLYGGMPLKLDSLTKLQYLDLSA-NKLWSLILENIDNLLKLCYLNL 95 (139)
Q Consensus 17 ~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~-n~~~~~~~~~~~~~~~L~~l~l 95 (139)
..+.+.+..|+++...++.|+++++|+.++++.|.|+.+.|++|+++.++..+-+.+ |+|++...+.|+++..++.|.+
T Consensus 68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLll 147 (498)
T KOG4237|consen 68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLL 147 (498)
T ss_pred cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhc
Confidence 345688999999988888999999999999999999989999999999987777766 8999998899999999999999
Q ss_pred CCCcccccCchhhhccCCCCeEEccCcccccccCc-cccCcCCC
Q 040935 96 SNNQFIQKIPIELEKLIPLSELDLNYNFLDVEIPF-QICNMKSL 138 (139)
Q Consensus 96 ~~n~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~p~-~~~~~~~L 138 (139)
.-|.+.-.....++.+++++.|.+.+|.+. .++. .|..+.++
T Consensus 148 Nan~i~Cir~~al~dL~~l~lLslyDn~~q-~i~~~tf~~l~~i 190 (498)
T KOG4237|consen 148 NANHINCIRQDALRDLPSLSLLSLYDNKIQ-SICKGTFQGLAAI 190 (498)
T ss_pred ChhhhcchhHHHHHHhhhcchhcccchhhh-hhccccccchhcc
Confidence 888887667778999999999999999886 5554 55555443
No 16
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=99.18 E-value=3.1e-11 Score=61.89 Aligned_cols=15 Identities=40% Similarity=0.408 Sum_probs=5.4
Q ss_pred cccccceeEeecccc
Q 040935 38 KLFSLNKLILNMNQL 52 (139)
Q Consensus 38 ~l~~L~~l~l~~~~~ 52 (139)
.+++|+++++++|.+
T Consensus 23 ~l~~L~~L~l~~N~l 37 (61)
T PF13855_consen 23 NLPNLETLDLSNNNL 37 (61)
T ss_dssp TGTTESEEEETSSSE
T ss_pred CCCCCCEeEccCCcc
Confidence 333333333333333
No 17
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=99.18 E-value=5.7e-11 Score=60.90 Aligned_cols=61 Identities=39% Similarity=0.453 Sum_probs=55.7
Q ss_pred cccceeEeeccccccCcCccccCCCCccEEEccCCcccccchHhhhccccccEEecCCCcc
Q 040935 40 FSLNKLILNMNQLYGGMPLKLDSLTKLQYLDLSANKLWSLILENIDNLLKLCYLNLSNNQF 100 (139)
Q Consensus 40 ~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~~ 100 (139)
++|+.+++++|.+....+..|..+++|+++++++|.+....+..|..+++|+++++.+|++
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 4688999999999777778999999999999999999999999999999999999999874
No 18
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.17 E-value=5.1e-11 Score=73.26 Aligned_cols=103 Identities=39% Similarity=0.396 Sum_probs=53.6
Q ss_pred CCCCccEEEccCCcceeechhhhccccccceeEeeccccccCcCccc-cCCCCccEEEccCCcccccc-hHhhhcccccc
Q 040935 14 DLSKLQVLDLSSNHIVGEIRVQLGKLFSLNKLILNMNQLYGGMPLKL-DSLTKLQYLDLSANKLWSLI-LENIDNLLKLC 91 (139)
Q Consensus 14 ~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~-~~~~~L~~l~l~~n~~~~~~-~~~~~~~~~L~ 91 (139)
.+..|+.|++++|.++ ... .+..++.|++|++++|.+... .+.+ ..+++|+++.+++|++.... ...+..+++|+
T Consensus 40 ~l~~L~~L~Ls~N~I~-~l~-~l~~L~~L~~L~L~~N~I~~i-~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~ 116 (175)
T PF14580_consen 40 TLDKLEVLDLSNNQIT-KLE-GLPGLPRLKTLDLSNNRISSI-SEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLR 116 (175)
T ss_dssp T-TT--EEE-TTS--S---T-T----TT--EEE--SS---S--CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--
T ss_pred hhcCCCEEECCCCCCc-ccc-CccChhhhhhcccCCCCCCcc-ccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcc
Confidence 4678999999999998 444 578899999999999999654 3333 46899999999999997643 35677899999
Q ss_pred EEecCCCcccccC---chhhhccCCCCeEEc
Q 040935 92 YLNLSNNQFIQKI---PIELEKLIPLSELDL 119 (139)
Q Consensus 92 ~l~l~~n~~~~~~---~~~~~~~~~L~~l~l 119 (139)
.|++.+|+++... ...+..+++|+.||-
T Consensus 117 ~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 117 VLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred eeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence 9999999997653 225788999999984
No 19
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.06 E-value=4.1e-11 Score=87.90 Aligned_cols=119 Identities=29% Similarity=0.278 Sum_probs=66.3
Q ss_pred CCccccCCccccCCCCccEEEccCCcceeechhhhccccccceeEeeccccccCcCccccCCCCccEEEccCCcccccch
Q 040935 2 NNIPRSIPLEIGDLSKLQVLDLSSNHIVGEIRVQLGKLFSLNKLILNMNQLYGGMPLKLDSLTKLQYLDLSANKLWSLIL 81 (139)
Q Consensus 2 n~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~ 81 (139)
|.++...-+.+.++..|+.|.+++|++.......+..++.|+.|++++|.+ ..+|..+..+..|+++...+|.+... |
T Consensus 369 N~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL-~~Lp~tva~~~~L~tL~ahsN~l~~f-P 446 (1081)
T KOG0618|consen 369 NHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKL-TTLPDTVANLGRLHTLRAHSNQLLSF-P 446 (1081)
T ss_pred CcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchh-hhhhHHHHhhhhhHHHhhcCCceeec-h
Confidence 444444444555666666666666666544444455566666666666665 44455555556666665555555433 2
Q ss_pred HhhhccccccEEecCCCcccccCchhhhccCCCCeEEccCcc
Q 040935 82 ENIDNLLKLCYLNLSNNQFIQKIPIELEKLIPLSELDLNYNF 123 (139)
Q Consensus 82 ~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~ 123 (139)
.+..++.|+.+|++.|.++......--.+++|+.||+++|.
T Consensus 447 -e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 447 -ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNT 487 (1081)
T ss_pred -hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCc
Confidence 34556666666666666654432222233566666666664
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.03 E-value=1.2e-10 Score=78.20 Aligned_cols=67 Identities=33% Similarity=0.263 Sum_probs=31.1
Q ss_pred cccCCCCccEEEccCCcceeechhhhccccc---cceeEeecccccc----CcCccccCC-CCccEEEccCCccc
Q 040935 11 EIGDLSKLQVLDLSSNHIVGEIRVQLGKLFS---LNKLILNMNQLYG----GMPLKLDSL-TKLQYLDLSANKLW 77 (139)
Q Consensus 11 ~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~---L~~l~l~~~~~~~----~~~~~~~~~-~~L~~l~l~~n~~~ 77 (139)
.+..++.|+.|++.++.+....+..+..+.. |+.+++++|.++. .....+..+ ++|+.+++.+|.++
T Consensus 76 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~ 150 (319)
T cd00116 76 GLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLE 150 (319)
T ss_pred HHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCC
Confidence 3444555556666555554333333333333 5555555555431 111222333 44555555555544
No 21
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.03 E-value=2e-09 Score=83.14 Aligned_cols=105 Identities=22% Similarity=0.244 Sum_probs=55.8
Q ss_pred CCCccEEEccCCcceeechhhhccccccceeEeeccccccCcCccccCCCCccEEEccCCcccccchHhhhccccccEEe
Q 040935 15 LSKLQVLDLSSNHIVGEIRVQLGKLFSLNKLILNMNQLYGGMPLKLDSLTKLQYLDLSANKLWSLILENIDNLLKLCYLN 94 (139)
Q Consensus 15 l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~ 94 (139)
+.+|+.|++.++.+. .++..+..+++|+.++++++......| .++.+++|+.+++.+|......|..+..+++|+.|+
T Consensus 610 ~~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~ 687 (1153)
T PLN03210 610 PENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLD 687 (1153)
T ss_pred ccCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEe
Confidence 455666666666655 444455556666666666554323334 245556666666666544344455555666666666
Q ss_pred cCCCcccccCchhhhccCCCCeEEccCc
Q 040935 95 LSNNQFIQKIPIELEKLIPLSELDLNYN 122 (139)
Q Consensus 95 l~~n~~~~~~~~~~~~~~~L~~l~l~~n 122 (139)
+.+|...+.+|..+ .+++|+.|++++|
T Consensus 688 L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc 714 (1153)
T PLN03210 688 MSRCENLEILPTGI-NLKSLYRLNLSGC 714 (1153)
T ss_pred CCCCCCcCccCCcC-CCCCCCEEeCCCC
Confidence 66554333444332 3445555555544
No 22
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.00 E-value=1.5e-11 Score=82.94 Aligned_cols=121 Identities=28% Similarity=0.275 Sum_probs=106.1
Q ss_pred CCccccCCccccCCCCccEEEccCCcceeechhhhccccccceeEe-eccccccCcCccccCCCCccEEEccCCcccccc
Q 040935 2 NNIPRSIPLEIGDLSKLQVLDLSSNHIVGEIRVQLGKLFSLNKLIL-NMNQLYGGMPLKLDSLTKLQYLDLSANKLWSLI 80 (139)
Q Consensus 2 n~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l-~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~ 80 (139)
|.|+...+.+|..+++|+.++++.|.++...|..|+.+..+..+.+ ++|+|.......|..+.+++.+.+.-|.+.-..
T Consensus 77 N~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir 156 (498)
T KOG4237|consen 77 NQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIR 156 (498)
T ss_pred CCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchh
Confidence 7788888899999999999999999999999999999999877655 559997666688999999999999999998888
Q ss_pred hHhhhccccccEEecCCCcccccCch-hhhccCCCCeEEccCcc
Q 040935 81 LENIDNLLKLCYLNLSNNQFIQKIPI-ELEKLIPLSELDLNYNF 123 (139)
Q Consensus 81 ~~~~~~~~~L~~l~l~~n~~~~~~~~-~~~~~~~L~~l~l~~n~ 123 (139)
.+.+..++++..|.+-+|.+. .++. .+..+..++++.+..|.
T Consensus 157 ~~al~dL~~l~lLslyDn~~q-~i~~~tf~~l~~i~tlhlA~np 199 (498)
T KOG4237|consen 157 QDALRDLPSLSLLSLYDNKIQ-SICKGTFQGLAAIKTLHLAQNP 199 (498)
T ss_pred HHHHHHhhhcchhcccchhhh-hhccccccchhccchHhhhcCc
Confidence 899999999999999999984 4444 68888899998888776
No 23
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.98 E-value=4.1e-09 Score=81.50 Aligned_cols=116 Identities=25% Similarity=0.255 Sum_probs=71.2
Q ss_pred ccEEEccCCcceeechhhhccccccceeEeeccccccCcCccccCCCCccEEEccCCcccccchHhhhccccccEEecCC
Q 040935 18 LQVLDLSSNHIVGEIRVQLGKLFSLNKLILNMNQLYGGMPLKLDSLTKLQYLDLSANKLWSLILENIDNLLKLCYLNLSN 97 (139)
Q Consensus 18 L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~ 97 (139)
|+.|.+.++.+. ..|..| ...+|+.|++.++.+ ...+..++.+++|+.++++++......|. +..+++|+.|++.+
T Consensus 591 Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l-~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~ 666 (1153)
T PLN03210 591 LRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKL-EKLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSD 666 (1153)
T ss_pred cEEEEecCCCCC-CCCCcC-CccCCcEEECcCccc-cccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecC
Confidence 444444444433 334333 345666677776666 34455566777778888776543333333 55677888888887
Q ss_pred CcccccCchhhhccCCCCeEEccCcccccccCccccCcCCC
Q 040935 98 NQFIQKIPIELEKLIPLSELDLNYNFLDVEIPFQICNMKSL 138 (139)
Q Consensus 98 n~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~p~~~~~~~~L 138 (139)
|.....+|..++.+++|+.|++++|.-...+|..+ ++++|
T Consensus 667 c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL 706 (1153)
T PLN03210 667 CSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSL 706 (1153)
T ss_pred CCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCC
Confidence 76556677778888888888888764334667644 34433
No 24
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.97 E-value=4.4e-11 Score=87.78 Aligned_cols=110 Identities=35% Similarity=0.398 Sum_probs=95.0
Q ss_pred CCCCccEEEccCCcceeechhhhccccccceeEeeccccccCcCccccCCCCccEEEccCCcccccchHhhhccccccEE
Q 040935 14 DLSKLQVLDLSSNHIVGEIRVQLGKLFSLNKLILNMNQLYGGMPLKLDSLTKLQYLDLSANKLWSLILENIDNLLKLCYL 93 (139)
Q Consensus 14 ~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l 93 (139)
.++.|+.|++.+|.+++..-+.+.++.+|++|++++|++.......+..+..|+.|++++|.++.. ++....+..|++|
T Consensus 357 ~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~L-p~tva~~~~L~tL 435 (1081)
T KOG0618|consen 357 NHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTL-PDTVANLGRLHTL 435 (1081)
T ss_pred hhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhh-hHHHHhhhhhHHH
Confidence 356688899999999988888999999999999999999555556778899999999999999776 4778888999999
Q ss_pred ecCCCcccccCchhhhccCCCCeEEccCccccc
Q 040935 94 NLSNNQFIQKIPIELEKLIPLSELDLNYNFLDV 126 (139)
Q Consensus 94 ~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~l~~ 126 (139)
....|.+. ..| ++..+++|+.+|++.|.++.
T Consensus 436 ~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~ 466 (1081)
T KOG0618|consen 436 RAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSE 466 (1081)
T ss_pred hhcCCcee-ech-hhhhcCcceEEecccchhhh
Confidence 99999984 456 88999999999999998864
No 25
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.96 E-value=1.7e-10 Score=77.34 Aligned_cols=108 Identities=30% Similarity=0.346 Sum_probs=44.0
Q ss_pred ccEEEccCCccee----echhhhccc-cccceeEeeccccccC----cCccccCCCCccEEEccCCcccccch----Hhh
Q 040935 18 LQVLDLSSNHIVG----EIRVQLGKL-FSLNKLILNMNQLYGG----MPLKLDSLTKLQYLDLSANKLWSLIL----ENI 84 (139)
Q Consensus 18 L~~l~l~~~~~~~----~~~~~~~~l-~~L~~l~l~~~~~~~~----~~~~~~~~~~L~~l~l~~n~~~~~~~----~~~ 84 (139)
|++|++.+|.+.+ .....+..+ ++++.+++++|.++.. .+..+..+..|+++++.+|.+.+... ..+
T Consensus 110 L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l 189 (319)
T cd00116 110 LQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGL 189 (319)
T ss_pred ccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHH
Confidence 5555555554441 111222333 4455555555554311 12223333445555555554442111 112
Q ss_pred hccccccEEecCCCccccc----CchhhhccCCCCeEEccCcccc
Q 040935 85 DNLLKLCYLNLSNNQFIQK----IPIELEKLIPLSELDLNYNFLD 125 (139)
Q Consensus 85 ~~~~~L~~l~l~~n~~~~~----~~~~~~~~~~L~~l~l~~n~l~ 125 (139)
...+.|+.+++.+|.+.+. +...+..+++|++|++++|.++
T Consensus 190 ~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~ 234 (319)
T cd00116 190 KANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLT 234 (319)
T ss_pred HhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCc
Confidence 2233455555555544321 1112233444555555554443
No 26
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.90 E-value=2.6e-10 Score=75.03 Aligned_cols=114 Identities=29% Similarity=0.216 Sum_probs=66.4
Q ss_pred cccCCCCccEEEccCCcceeechhhhccccccceeEeeccccccCcCccccCCCCccEEEccCCcccccchHhhhccccc
Q 040935 11 EIGDLSKLQVLDLSSNHIVGEIRVQLGKLFSLNKLILNMNQLYGGMPLKLDSLTKLQYLDLSANKLWSLILENIDNLLKL 90 (139)
Q Consensus 11 ~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L 90 (139)
++.-++.++.|++++|++. ... .+..+++|+.+|+++|.+ ..+.+.-..+.+++++.+.+|.+.+. ..+..+.+|
T Consensus 302 SvKL~Pkir~L~lS~N~i~-~v~-nLa~L~~L~~LDLS~N~L-s~~~Gwh~KLGNIKtL~La~N~iE~L--SGL~KLYSL 376 (490)
T KOG1259|consen 302 SVKLAPKLRRLILSQNRIR-TVQ-NLAELPQLQLLDLSGNLL-AECVGWHLKLGNIKTLKLAQNKIETL--SGLRKLYSL 376 (490)
T ss_pred hhhhccceeEEecccccee-eeh-hhhhcccceEeecccchh-HhhhhhHhhhcCEeeeehhhhhHhhh--hhhHhhhhh
Confidence 3444455555555555554 222 245555555555555555 23333333444555555555555332 334556778
Q ss_pred cEEecCCCcccccC-chhhhccCCCCeEEccCcccccccCc
Q 040935 91 CYLNLSNNQFIQKI-PIELEKLIPLSELDLNYNFLDVEIPF 130 (139)
Q Consensus 91 ~~l~l~~n~~~~~~-~~~~~~~~~L~~l~l~~n~l~~~~p~ 130 (139)
..||+.+|++.... ...++.++.|+++.+.+|++. .+|+
T Consensus 377 vnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~-~~vd 416 (490)
T KOG1259|consen 377 VNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLA-GSVD 416 (490)
T ss_pred eeccccccchhhHHHhcccccccHHHHHhhcCCCcc-ccch
Confidence 88888888884322 335788899999999999887 4443
No 27
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.76 E-value=1.3e-08 Score=75.32 Aligned_cols=107 Identities=27% Similarity=0.282 Sum_probs=66.3
Q ss_pred CCccEEEccCCcceeechhhhcc-----------------ccccceeEeeccccccCcCccccCCCCccEEEccCCcccc
Q 040935 16 SKLQVLDLSSNHIVGEIRVQLGK-----------------LFSLNKLILNMNQLYGGMPLKLDSLTKLQYLDLSANKLWS 78 (139)
Q Consensus 16 ~~L~~l~l~~~~~~~~~~~~~~~-----------------l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~ 78 (139)
.+|+.|++++|.++ .+|..... ...|+.+++++|.+. .+|.. ..+|+.+++++|.+..
T Consensus 342 ~~Lq~LdLS~N~Ls-~LP~lp~~L~~L~Ls~N~L~~LP~l~~~L~~LdLs~N~Lt-~LP~l---~s~L~~LdLS~N~Lss 416 (788)
T PRK15387 342 SGLQELSVSDNQLA-SLPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLT-SLPVL---PSELKELMVSGNRLTS 416 (788)
T ss_pred cccceEecCCCccC-CCCCCCcccceehhhccccccCcccccccceEEecCCccc-CCCCc---ccCCCEEEccCCcCCC
Confidence 36777788777776 33321111 123555566666553 23322 2356667777777654
Q ss_pred cchHhhhccccccEEecCCCcccccCchhhhccCCCCeEEccCcccccccCccc
Q 040935 79 LILENIDNLLKLCYLNLSNNQFIQKIPIELEKLIPLSELDLNYNFLDVEIPFQI 132 (139)
Q Consensus 79 ~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~p~~~ 132 (139)
.+ .. ...|+.|++.+|.++ .+|..+..++.|+.+++++|++++..|.++
T Consensus 417 IP-~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L 465 (788)
T PRK15387 417 LP-ML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQAL 465 (788)
T ss_pred CC-cc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHH
Confidence 32 21 245677788888874 567778888888889999998887766655
No 28
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.69 E-value=3.1e-08 Score=73.38 Aligned_cols=38 Identities=32% Similarity=0.452 Sum_probs=17.4
Q ss_pred cccEEecCCCcccccCchhhhccCCCCeEEccCcccccccCc
Q 040935 89 KLCYLNLSNNQFIQKIPIELEKLIPLSELDLNYNFLDVEIPF 130 (139)
Q Consensus 89 ~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~p~ 130 (139)
+|+.|++.+|.++ .+|..+ .++|+.|++++|.++ .+|+
T Consensus 347 sL~~L~Ls~N~L~-~LP~~l--p~~L~~LdLs~N~Lt-~LP~ 384 (754)
T PRK15370 347 ELQVLDVSKNQIT-VLPETL--PPTITTLDVSRNALT-NLPE 384 (754)
T ss_pred cccEEECCCCCCC-cCChhh--cCCcCEEECCCCcCC-CCCH
Confidence 4445555555443 233222 134555555555555 4443
No 29
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.68 E-value=3.5e-09 Score=69.83 Aligned_cols=120 Identities=33% Similarity=0.330 Sum_probs=90.0
Q ss_pred ccCCCCccEEEccCCcceeechhhhccccccceeEeeccccccCcCccccCCCCccEEEccCCcccccchHhhhcccccc
Q 040935 12 IGDLSKLQVLDLSSNHIVGEIRVQLGKLFSLNKLILNMNQLYGGMPLKLDSLTKLQYLDLSANKLWSLILENIDNLLKLC 91 (139)
Q Consensus 12 ~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~ 91 (139)
+..+..|+.+++++|.++ ......+-.|.++.++++.|.+..+ +.+..+++|+.+++++|.++.... .-..+-+++
T Consensus 280 ~dTWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls~~~G-wh~KLGNIK 355 (490)
T KOG1259|consen 280 ADTWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLAECVG-WHLKLGNIK 355 (490)
T ss_pred cchHhhhhhccccccchh-hhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhHhhhh-hHhhhcCEe
Confidence 345677888999999987 6777778888999999999998544 447888999999999998875432 223456888
Q ss_pred EEecCCCcccccCchhhhccCCCCeEEccCccccccc--CccccCcCCC
Q 040935 92 YLNLSNNQFIQKIPIELEKLIPLSELDLNYNFLDVEI--PFQICNMKSL 138 (139)
Q Consensus 92 ~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~--p~~~~~~~~L 138 (139)
+|.+..|.+. ....+..+.+|..||+++|+|. .+ -.++++++.|
T Consensus 356 tL~La~N~iE--~LSGL~KLYSLvnLDl~~N~Ie-~ldeV~~IG~LPCL 401 (490)
T KOG1259|consen 356 TLKLAQNKIE--TLSGLRKLYSLVNLDLSSNQIE-ELDEVNHIGNLPCL 401 (490)
T ss_pred eeehhhhhHh--hhhhhHhhhhheeccccccchh-hHHHhcccccccHH
Confidence 8999999872 2345677788899999999874 22 2456666654
No 30
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.67 E-value=5e-08 Score=72.30 Aligned_cols=62 Identities=27% Similarity=0.377 Sum_probs=33.7
Q ss_pred CCccEEEccCCcccccchHhhhccccccEEecCCCcccccCchhhhccCCCCeEEccCcccccccCccc
Q 040935 64 TKLQYLDLSANKLWSLILENIDNLLKLCYLNLSNNQFIQKIPIELEKLIPLSELDLNYNFLDVEIPFQI 132 (139)
Q Consensus 64 ~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~p~~~ 132 (139)
++|+.|++++|.+... |..+ .+.|+.|++.+|.++. +|..+. ..|+.|++++|.+. .+|+++
T Consensus 346 ~sL~~L~Ls~N~L~~L-P~~l--p~~L~~LdLs~N~Lt~-LP~~l~--~sL~~LdLs~N~L~-~LP~sl 407 (754)
T PRK15370 346 PELQVLDVSKNQITVL-PETL--PPTITTLDVSRNALTN-LPENLP--AALQIMQASRNNLV-RLPESL 407 (754)
T ss_pred CcccEEECCCCCCCcC-Chhh--cCCcCEEECCCCcCCC-CCHhHH--HHHHHHhhccCCcc-cCchhH
Confidence 3556666666655432 2222 2466677777776643 343332 24666667777665 555544
No 31
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.65 E-value=1.9e-07 Score=69.29 Aligned_cols=86 Identities=22% Similarity=0.222 Sum_probs=46.9
Q ss_pred cCCccccCCCCccEEEccCCcceeechhhhccccccceeEeeccccccCcCccccCCCCccEEEccCCcccccch--Hhh
Q 040935 7 SIPLEIGDLSKLQVLDLSSNHIVGEIRVQLGKLFSLNKLILNMNQLYGGMPLKLDSLTKLQYLDLSANKLWSLIL--ENI 84 (139)
Q Consensus 7 ~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~--~~~ 84 (139)
.+|+.+. ..++.|.+.+|.++ .+|. .+++|+.|++++|.+.. +|.. .++|+.|++.+|.+..... ..+
T Consensus 215 sLP~~l~--~~L~~L~L~~N~Lt-~LP~---lp~~Lk~LdLs~N~Lts-LP~l---p~sL~~L~Ls~N~L~~Lp~lp~~L 284 (788)
T PRK15387 215 TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLTS-LPVL---PPGLLELSIFSNPLTHLPALPSGL 284 (788)
T ss_pred cCCcchh--cCCCEEEccCCcCC-CCCC---CCCCCcEEEecCCccCc-ccCc---ccccceeeccCCchhhhhhchhhc
Confidence 3455443 36777888888777 3443 24577888888887743 3422 2345555555554432211 000
Q ss_pred --------------hccccccEEecCCCcccc
Q 040935 85 --------------DNLLKLCYLNLSNNQFIQ 102 (139)
Q Consensus 85 --------------~~~~~L~~l~l~~n~~~~ 102 (139)
...++|+.|++.+|.+++
T Consensus 285 ~~L~Ls~N~Lt~LP~~p~~L~~LdLS~N~L~~ 316 (788)
T PRK15387 285 CKLWIFGNQLTSLPVLPPGLQELSVSDNQLAS 316 (788)
T ss_pred CEEECcCCccccccccccccceeECCCCcccc
Confidence 012567777777776654
No 32
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.61 E-value=4.3e-10 Score=79.14 Aligned_cols=124 Identities=35% Similarity=0.448 Sum_probs=100.1
Q ss_pred cCCccccCCCCccEEEccCCcceeechhhhccccccceeEeeccccccCcCccccCCCCccEEEccCCcccccchHhhhc
Q 040935 7 SIPLEIGDLSKLQVLDLSSNHIVGEIRVQLGKLFSLNKLILNMNQLYGGMPLKLDSLTKLQYLDLSANKLWSLILENIDN 86 (139)
Q Consensus 7 ~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~ 86 (139)
++|..++.+..|..+.++.|.+. ..|..+.++..|..++++.|.+ ...|..+..++ |+.+-+.+|+++.. |..++.
T Consensus 89 elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~Nql-S~lp~~lC~lp-Lkvli~sNNkl~~l-p~~ig~ 164 (722)
T KOG0532|consen 89 ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQL-SHLPDGLCDLP-LKVLIVSNNKLTSL-PEEIGL 164 (722)
T ss_pred cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchh-hcCChhhhcCc-ceeEEEecCccccC-Cccccc
Confidence 35555666677777788888887 6788888899999999999998 66677766665 88888999998655 444668
Q ss_pred cccccEEecCCCcccccCchhhhccCCCCeEEccCcccccccCccccCcC
Q 040935 87 LLKLCYLNLSNNQFIQKIPIELEKLIPLSELDLNYNFLDVEIPFQICNMK 136 (139)
Q Consensus 87 ~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~p~~~~~~~ 136 (139)
...|.+++...|.+ ..+|..++.+.+|+.+.+..|++. .+|++++.++
T Consensus 165 ~~tl~~ld~s~nei-~slpsql~~l~slr~l~vrRn~l~-~lp~El~~Lp 212 (722)
T KOG0532|consen 165 LPTLAHLDVSKNEI-QSLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSLP 212 (722)
T ss_pred chhHHHhhhhhhhh-hhchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCCc
Confidence 88999999999998 567888999999999999999998 8898888765
No 33
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.49 E-value=1.5e-07 Score=70.87 Aligned_cols=106 Identities=31% Similarity=0.339 Sum_probs=70.4
Q ss_pred CCccEEEccCCc--ceeechhhhccccccceeEeeccccccCcCccccCCCCccEEEccCCcccccchHhhhccccccEE
Q 040935 16 SKLQVLDLSSNH--IVGEIRVQLGKLFSLNKLILNMNQLYGGMPLKLDSLTKLQYLDLSANKLWSLILENIDNLLKLCYL 93 (139)
Q Consensus 16 ~~L~~l~l~~~~--~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l 93 (139)
+.++.|.+.++. +.......|..++.|++||+++|.-.+.+|..++.+.+|++|++.+..+. ..|..+..+..|.+|
T Consensus 545 ~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~L 623 (889)
T KOG4658|consen 545 PKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYL 623 (889)
T ss_pred CccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhhee
Confidence 356677776664 33334444667777777777776655677777777777777777777775 345667777777777
Q ss_pred ecCCCcccccCchhhhccCCCCeEEccCc
Q 040935 94 NLSNNQFIQKIPIELEKLIPLSELDLNYN 122 (139)
Q Consensus 94 ~l~~n~~~~~~~~~~~~~~~L~~l~l~~n 122 (139)
++..+.-...++.....+.+|++|.+...
T Consensus 624 nl~~~~~l~~~~~i~~~L~~Lr~L~l~~s 652 (889)
T KOG4658|consen 624 NLEVTGRLESIPGILLELQSLRVLRLPRS 652 (889)
T ss_pred ccccccccccccchhhhcccccEEEeecc
Confidence 77766544445555566777777766544
No 34
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.41 E-value=4.5e-07 Score=56.61 Aligned_cols=100 Identities=31% Similarity=0.304 Sum_probs=55.5
Q ss_pred cEEEccCCcceeechhhhccccccceeEeeccccccCcCccccCCCCccEEEccCCcccccc-hHhhhccccccEEecCC
Q 040935 19 QVLDLSSNHIVGEIRVQLGKLFSLNKLILNMNQLYGGMPLKLDSLTKLQYLDLSANKLWSLI-LENIDNLLKLCYLNLSN 97 (139)
Q Consensus 19 ~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~-~~~~~~~~~L~~l~l~~ 97 (139)
..+++.+|.+. . .+.|..++.|.+|.+++|++..+.|.--..++.+..|.+++|++.... .+.+..++.|+.|.+-+
T Consensus 45 d~iDLtdNdl~-~-l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~ 122 (233)
T KOG1644|consen 45 DAIDLTDNDLR-K-LDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLG 122 (233)
T ss_pred ceecccccchh-h-cccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecC
Confidence 34555666553 2 224556666666667666665554544444556666666666665432 23344566666666666
Q ss_pred Cccccc---CchhhhccCCCCeEEcc
Q 040935 98 NQFIQK---IPIELEKLIPLSELDLN 120 (139)
Q Consensus 98 n~~~~~---~~~~~~~~~~L~~l~l~ 120 (139)
|+++.. ....+..+++|++||+.
T Consensus 123 Npv~~k~~YR~yvl~klp~l~~LDF~ 148 (233)
T KOG1644|consen 123 NPVEHKKNYRLYVLYKLPSLRTLDFQ 148 (233)
T ss_pred CchhcccCceeEEEEecCcceEeehh
Confidence 665432 11234555666666654
No 35
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.39 E-value=1.9e-07 Score=64.73 Aligned_cols=82 Identities=38% Similarity=0.493 Sum_probs=33.1
Q ss_pred CCccEEEccCCcceeechhhhcccc-ccceeEeeccccccCcCccccCCCCccEEEccCCcccccchHhhhccccccEEe
Q 040935 16 SKLQVLDLSSNHIVGEIRVQLGKLF-SLNKLILNMNQLYGGMPLKLDSLTKLQYLDLSANKLWSLILENIDNLLKLCYLN 94 (139)
Q Consensus 16 ~~L~~l~l~~~~~~~~~~~~~~~l~-~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~ 94 (139)
..++.+.+.++.+. ..+....... +|+.+++++|.+ ...|..+..++.|+.+++..|.+....+. ....+.|+.++
T Consensus 116 ~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i-~~l~~~~~~l~~L~~L~l~~N~l~~l~~~-~~~~~~L~~L~ 192 (394)
T COG4886 116 TNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKI-ESLPSPLRNLPNLKNLDLSFNDLSDLPKL-LSNLSNLNNLD 192 (394)
T ss_pred cceeEEecCCcccc-cCccccccchhhcccccccccch-hhhhhhhhccccccccccCCchhhhhhhh-hhhhhhhhhee
Confidence 33444444444444 2333333332 444444444444 22223334444444444444444333221 11334444444
Q ss_pred cCCCcc
Q 040935 95 LSNNQF 100 (139)
Q Consensus 95 l~~n~~ 100 (139)
+.+|.+
T Consensus 193 ls~N~i 198 (394)
T COG4886 193 LSGNKI 198 (394)
T ss_pred ccCCcc
Confidence 444444
No 36
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.37 E-value=3.1e-07 Score=63.67 Aligned_cols=123 Identities=37% Similarity=0.483 Sum_probs=71.1
Q ss_pred CccccCCC-CccEEEccCCcceeechhhhccccccceeEeeccccccCcCccccCCCCccEEEccCCcccccchHhhhcc
Q 040935 9 PLEIGDLS-KLQVLDLSSNHIVGEIRVQLGKLFSLNKLILNMNQLYGGMPLKLDSLTKLQYLDLSANKLWSLILENIDNL 87 (139)
Q Consensus 9 ~~~~~~l~-~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~ 87 (139)
++....+. +|+.+++.+|.+. ..+..+..++.|+.|+++.|.+ ...+...+..+.+..+++++|++....+. ....
T Consensus 132 ~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l-~~l~~~~~~~~~L~~L~ls~N~i~~l~~~-~~~~ 208 (394)
T COG4886 132 PPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDL-SDLPKLLSNLSNLNNLDLSGNKISDLPPE-IELL 208 (394)
T ss_pred ccccccchhhcccccccccchh-hhhhhhhccccccccccCCchh-hhhhhhhhhhhhhhheeccCCccccCchh-hhhh
Confidence 33334443 7777777777776 4545567777777777777777 34444434566677777777777654332 1222
Q ss_pred ccccEEecCCC-----------------------cccccCchhhhccCCCCeEEccCcccccccCccccCcCC
Q 040935 88 LKLCYLNLSNN-----------------------QFIQKIPIELEKLIPLSELDLNYNFLDVEIPFQICNMKS 137 (139)
Q Consensus 88 ~~L~~l~l~~n-----------------------~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~p~~~~~~~~ 137 (139)
..|..+.+.+| .+. ..+..++.++.++.+++++|.++ .++. ++.+..
T Consensus 209 ~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~-~i~~-~~~~~~ 278 (394)
T COG4886 209 SALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQIS-SISS-LGSLTN 278 (394)
T ss_pred hhhhhhhhcCCcceecchhhhhcccccccccCCceee-eccchhccccccceecccccccc-cccc-ccccCc
Confidence 33444444444 432 12345566667777777777776 4444 444433
No 37
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.36 E-value=5.8e-07 Score=42.72 Aligned_cols=36 Identities=42% Similarity=0.529 Sum_probs=23.5
Q ss_pred cccEEecCCCcccccCchhhhccCCCCeEEccCcccc
Q 040935 89 KLCYLNLSNNQFIQKIPIELEKLIPLSELDLNYNFLD 125 (139)
Q Consensus 89 ~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~l~ 125 (139)
+|+.|++.+|.+++ ++..++.+++|+.|++++|+++
T Consensus 2 ~L~~L~l~~N~i~~-l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQITD-LPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-SS-HGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCcc-cCchHhCCCCCCEEEecCCCCC
Confidence 56677777777753 4445777777777777777776
No 38
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.31 E-value=1.3e-08 Score=73.96 Aligned_cols=110 Identities=33% Similarity=0.308 Sum_probs=73.6
Q ss_pred ccccCCCCccEEEccCCcceeechhhhccccccceeEeeccccccCcCc-cccCCCCccEEEccCCcccccchHhhhccc
Q 040935 10 LEIGDLSKLQVLDLSSNHIVGEIRVQLGKLFSLNKLILNMNQLYGGMPL-KLDSLTKLQYLDLSANKLWSLILENIDNLL 88 (139)
Q Consensus 10 ~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~-~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~ 88 (139)
.++.-++.++.|++++|++++ .. .+..++.|..||++.|.+. ..|. ....+. |+.+.+.+|.++.. ..+.++.
T Consensus 181 ~SLqll~ale~LnLshNk~~~-v~-~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~-L~~L~lrnN~l~tL--~gie~Lk 254 (1096)
T KOG1859|consen 181 ESLQLLPALESLNLSHNKFTK-VD-NLRRLPKLKHLDLSYNCLR-HVPQLSMVGCK-LQLLNLRNNALTTL--RGIENLK 254 (1096)
T ss_pred HHHHHHHHhhhhccchhhhhh-hH-HHHhcccccccccccchhc-cccccchhhhh-heeeeecccHHHhh--hhHHhhh
Confidence 344556677788888888763 33 6777888888888888873 3332 223333 78888888877653 3355677
Q ss_pred cccEEecCCCcccccCc-hhhhccCCCCeEEccCcccc
Q 040935 89 KLCYLNLSNNQFIQKIP-IELEKLIPLSELDLNYNFLD 125 (139)
Q Consensus 89 ~L~~l~l~~n~~~~~~~-~~~~~~~~L~~l~l~~n~l~ 125 (139)
+|+.||+.+|-+.+.-. ..++.+..|+.|.+.+|++.
T Consensus 255 sL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 255 SLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred hhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 88888888887765422 23566777778888888763
No 39
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=98.30 E-value=5.2e-06 Score=48.57 Aligned_cols=125 Identities=14% Similarity=0.075 Sum_probs=71.1
Q ss_pred CccccCCCCccEEEccCCcceeechhhhccccccceeEeeccccccCcCccccCCCCccEEEccCCcccccchHhhhccc
Q 040935 9 PLEIGDLSKLQVLDLSSNHIVGEIRVQLGKLFSLNKLILNMNQLYGGMPLKLDSLTKLQYLDLSANKLWSLILENIDNLL 88 (139)
Q Consensus 9 ~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~ 88 (139)
..+|.++..|+.+.+.. .+.......|..+..++.+.+..+ +.......|..+.+++.+.+.+ .+.......+....
T Consensus 5 ~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~ 81 (129)
T PF13306_consen 5 NNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCT 81 (129)
T ss_dssp TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-T
T ss_pred HHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccc
Confidence 45778888999999885 566567778888889999999875 6555567788888899999976 55555666788889
Q ss_pred cccEEecCCCcccccCchhhhccCCCCeEEccCcccccccCccccCcCCCC
Q 040935 89 KLCYLNLSNNQFIQKIPIELEKLIPLSELDLNYNFLDVEIPFQICNMKSLE 139 (139)
Q Consensus 89 ~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~p~~~~~~~~L~ 139 (139)
+++.+.+..+ +.......+... .++.+.+.. .+...-...|.+|++|+
T Consensus 82 ~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l~ 129 (129)
T PF13306_consen 82 NLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKLK 129 (129)
T ss_dssp TECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG------
T ss_pred cccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccCC
Confidence 9999999765 433333456666 899998876 44435567888888774
No 40
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.28 E-value=6.2e-08 Score=57.03 Aligned_cols=108 Identities=31% Similarity=0.346 Sum_probs=66.9
Q ss_pred CccEEEccCCcceeechh---hhccccccceeEeeccccccCcCcccc-CCCCccEEEccCCcccccchHhhhccccccE
Q 040935 17 KLQVLDLSSNHIVGEIRV---QLGKLFSLNKLILNMNQLYGGMPLKLD-SLTKLQYLDLSANKLWSLILENIDNLLKLCY 92 (139)
Q Consensus 17 ~L~~l~l~~~~~~~~~~~---~~~~l~~L~~l~l~~~~~~~~~~~~~~-~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~ 92 (139)
.+..++++.+.+- ..++ -+.....|..+.+++|.+ ...|+.|. .++.+..+++.+|.+++++.+ +..++.|+.
T Consensus 28 E~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~f-k~fp~kft~kf~t~t~lNl~~neisdvPeE-~Aam~aLr~ 104 (177)
T KOG4579|consen 28 ELHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGF-KKFPKKFTIKFPTATTLNLANNEISDVPEE-LAAMPALRS 104 (177)
T ss_pred Hhhhcccccchhh-HHHHHHHHHhCCceEEEEecccchh-hhCCHHHhhccchhhhhhcchhhhhhchHH-HhhhHHhhh
Confidence 3455566666543 2222 223334456667777777 44455553 344677777777777766555 777777788
Q ss_pred EecCCCcccccCchhhhccCCCCeEEccCcccccccC
Q 040935 93 LNLSNNQFIQKIPIELEKLIPLSELDLNYNFLDVEIP 129 (139)
Q Consensus 93 l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~p 129 (139)
++++.|++ ...|..+..+.++..|+..+|.+. .+|
T Consensus 105 lNl~~N~l-~~~p~vi~~L~~l~~Lds~~na~~-eid 139 (177)
T KOG4579|consen 105 LNLRFNPL-NAEPRVIAPLIKLDMLDSPENARA-EID 139 (177)
T ss_pred cccccCcc-ccchHHHHHHHhHHHhcCCCCccc-cCc
Confidence 88877777 345666666777777777777654 444
No 41
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.27 E-value=1.1e-06 Score=66.45 Aligned_cols=124 Identities=28% Similarity=0.294 Sum_probs=95.3
Q ss_pred cCCCCccEEEccCCcceeechhhhccccccceeEeeccc--cccCcCccccCCCCccEEEccCCcccccchHhhhccccc
Q 040935 13 GDLSKLQVLDLSSNHIVGEIRVQLGKLFSLNKLILNMNQ--LYGGMPLKLDSLTKLQYLDLSANKLWSLILENIDNLLKL 90 (139)
Q Consensus 13 ~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~--~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L 90 (139)
......+...+.++.+. ..+.. ...+.+++|-+.+|. +.....+.|..++.|+.|++++|.--+..|+.++.+-+|
T Consensus 520 ~~~~~~rr~s~~~~~~~-~~~~~-~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~L 597 (889)
T KOG4658|consen 520 KSWNSVRRMSLMNNKIE-HIAGS-SENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHL 597 (889)
T ss_pred cchhheeEEEEeccchh-hccCC-CCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhh
Confidence 34466677778888775 34433 344478898888886 433444557889999999999887767788889999999
Q ss_pred cEEecCCCcccccCchhhhccCCCCeEEccCcccccccCccccCcCCCC
Q 040935 91 CYLNLSNNQFIQKIPIELEKLIPLSELDLNYNFLDVEIPFQICNMKSLE 139 (139)
Q Consensus 91 ~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~p~~~~~~~~L~ 139 (139)
+.|++.++.+. .+|..++.++.|.+|++..+.....+|.....+++|+
T Consensus 598 ryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr 645 (889)
T KOG4658|consen 598 RYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLR 645 (889)
T ss_pred hcccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhccccc
Confidence 99999999984 6888999999999999998865546666666677764
No 42
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.19 E-value=3.7e-06 Score=52.64 Aligned_cols=104 Identities=27% Similarity=0.162 Sum_probs=77.7
Q ss_pred ccEEEccCCcceeechhhhcc-ccccceeEeeccccccCcCccccCCCCccEEEccCCcccccchHhhhccccccEEecC
Q 040935 18 LQVLDLSSNHIVGEIRVQLGK-LFSLNKLILNMNQLYGGMPLKLDSLTKLQYLDLSANKLWSLILENIDNLLKLCYLNLS 96 (139)
Q Consensus 18 L~~l~l~~~~~~~~~~~~~~~-l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~ 96 (139)
-+.+++.+.++.. .. .+.. +.+...+|+++|.+ .. ...|..+++|.+|.+++|+++.+.+..-..+++|..|.+.
T Consensus 21 e~e~~LR~lkip~-ie-nlg~~~d~~d~iDLtdNdl-~~-l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~Lt 96 (233)
T KOG1644|consen 21 ERELDLRGLKIPV-IE-NLGATLDQFDAIDLTDNDL-RK-LDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILT 96 (233)
T ss_pred ccccccccccccc-hh-hccccccccceecccccch-hh-cccCCCccccceEEecCCcceeeccchhhhccccceEEec
Confidence 3456677766542 11 1222 33567889999988 33 3567788999999999999999988866677899999999
Q ss_pred CCcccccC-chhhhccCCCCeEEccCcccc
Q 040935 97 NNQFIQKI-PIELEKLIPLSELDLNYNFLD 125 (139)
Q Consensus 97 ~n~~~~~~-~~~~~~~~~L~~l~l~~n~l~ 125 (139)
+|.+.+.. ..-+..+++|+.|.+-+|+++
T Consensus 97 nNsi~~l~dl~pLa~~p~L~~Ltll~Npv~ 126 (233)
T KOG1644|consen 97 NNSIQELGDLDPLASCPKLEYLTLLGNPVE 126 (233)
T ss_pred CcchhhhhhcchhccCCccceeeecCCchh
Confidence 99885432 224688899999999999886
No 43
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.16 E-value=2.9e-06 Score=40.30 Aligned_cols=35 Identities=37% Similarity=0.529 Sum_probs=18.7
Q ss_pred CccEEEccCCcceeechhhhccccccceeEeecccc
Q 040935 17 KLQVLDLSSNHIVGEIRVQLGKLFSLNKLILNMNQL 52 (139)
Q Consensus 17 ~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~ 52 (139)
+|++|++++|.++ .+|+.+..+++|+.+++++|.+
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i 36 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPI 36 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCC
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCC
Confidence 4555666666665 3444455555666666655555
No 44
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.13 E-value=7.6e-07 Score=62.26 Aligned_cols=109 Identities=34% Similarity=0.422 Sum_probs=73.3
Q ss_pred cccCCCCccEEEccCCcceeechhhhccccccceeEeeccccccCcCccccCCCCccEEEccCCcccccchHhhhccccc
Q 040935 11 EIGDLSKLQVLDLSSNHIVGEIRVQLGKLFSLNKLILNMNQLYGGMPLKLDSLTKLQYLDLSANKLWSLILENIDNLLKL 90 (139)
Q Consensus 11 ~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L 90 (139)
.+..+..+..+++.+|.+. .....+..+++|+.+++++|.++.. ..+..+..|+.|++.+|.+... ..+..+..|
T Consensus 90 ~l~~~~~l~~l~l~~n~i~-~i~~~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L~l~~N~i~~~--~~~~~l~~L 164 (414)
T KOG0531|consen 90 HLSKLKSLEALDLYDNKIE-KIENLLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKELNLSGNLISDI--SGLESLKSL 164 (414)
T ss_pred ccccccceeeeeccccchh-hcccchhhhhcchheeccccccccc--cchhhccchhhheeccCcchhc--cCCccchhh
Confidence 3566778888888888876 3333366788888888888888544 2334556688888888888654 223446778
Q ss_pred cEEecCCCcccccCc-hhhhccCCCCeEEccCcccc
Q 040935 91 CYLNLSNNQFIQKIP-IELEKLIPLSELDLNYNFLD 125 (139)
Q Consensus 91 ~~l~l~~n~~~~~~~-~~~~~~~~L~~l~l~~n~l~ 125 (139)
+.+++.+|.+....+ . ...+.+++.+.+.+|.+.
T Consensus 165 ~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~ 199 (414)
T KOG0531|consen 165 KLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIR 199 (414)
T ss_pred hcccCCcchhhhhhhhh-hhhccchHHHhccCCchh
Confidence 888888887754333 1 356667777777777654
No 45
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.10 E-value=1.2e-06 Score=58.81 Aligned_cols=111 Identities=23% Similarity=0.164 Sum_probs=54.0
Q ss_pred CCCCccEEEccCCccee----echhhhccccccceeEeecccccc----CcCccccCCCCccEEEccCCcccccchHhhh
Q 040935 14 DLSKLQVLDLSSNHIVG----EIRVQLGKLFSLNKLILNMNQLYG----GMPLKLDSLTKLQYLDLSANKLWSLILENID 85 (139)
Q Consensus 14 ~l~~L~~l~l~~~~~~~----~~~~~~~~l~~L~~l~l~~~~~~~----~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~ 85 (139)
..+.|+.+.+.+|++.. ..-..+.++++|++|++.+|.++. .+...+..++.|+.+++++|.+.......+.
T Consensus 183 ~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~ 262 (382)
T KOG1909|consen 183 SHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFV 262 (382)
T ss_pred hccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHH
Confidence 33455555555554432 122344555566666666665532 2233444555566666666655543332222
Q ss_pred -----ccccccEEecCCCcccccCch----hhhccCCCCeEEccCccc
Q 040935 86 -----NLLKLCYLNLSNNQFIQKIPI----ELEKLIPLSELDLNYNFL 124 (139)
Q Consensus 86 -----~~~~L~~l~l~~n~~~~~~~~----~~~~~~~L~~l~l~~n~l 124 (139)
..++|+.+.+.+|.++..-.. .+...+.|..|++++|.+
T Consensus 263 ~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 263 DALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred HHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 235566666666655432111 223345556666666655
No 46
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.04 E-value=2.1e-07 Score=67.96 Aligned_cols=104 Identities=36% Similarity=0.353 Sum_probs=73.4
Q ss_pred CCccEEEccCCcceeechhhhccccccceeEeeccccccCcCccccCCCCccEEEccCCcccccchHhhhccccccEEec
Q 040935 16 SKLQVLDLSSNHIVGEIRVQLGKLFSLNKLILNMNQLYGGMPLKLDSLTKLQYLDLSANKLWSLILENIDNLLKLCYLNL 95 (139)
Q Consensus 16 ~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l 95 (139)
..|...++++|.+. .....+.-++.++.|+++.|.+... +.+.+++.|++++++-|.++.+..-.. .-+.|..|.+
T Consensus 164 n~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~~vp~l~~-~gc~L~~L~l 239 (1096)
T KOG1859|consen 164 NKLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLRHVPQLSM-VGCKLQLLNL 239 (1096)
T ss_pred hhHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhccccccch-hhhhheeeee
Confidence 34556677777776 5666677777888888888887433 267788888888888888765532222 2245888888
Q ss_pred CCCcccccCchhhhccCCCCeEEccCcccc
Q 040935 96 SNNQFIQKIPIELEKLIPLSELDLNYNFLD 125 (139)
Q Consensus 96 ~~n~~~~~~~~~~~~~~~L~~l~l~~n~l~ 125 (139)
++|.++. ...+..+++|+.||+++|-+.
T Consensus 240 rnN~l~t--L~gie~LksL~~LDlsyNll~ 267 (1096)
T KOG1859|consen 240 RNNALTT--LRGIENLKSLYGLDLSYNLLS 267 (1096)
T ss_pred cccHHHh--hhhHHhhhhhhccchhHhhhh
Confidence 8888743 235678888888888888665
No 47
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.03 E-value=6.2e-07 Score=52.91 Aligned_cols=82 Identities=24% Similarity=0.257 Sum_probs=45.8
Q ss_pred CCccEEEccCCcceeechhhhccc-cccceeEeeccccccCcCccccCCCCccEEEccCCcccccchHhhhccccccEEe
Q 040935 16 SKLQVLDLSSNHIVGEIRVQLGKL-FSLNKLILNMNQLYGGMPLKLDSLTKLQYLDLSANKLWSLILENIDNLLKLCYLN 94 (139)
Q Consensus 16 ~~L~~l~l~~~~~~~~~~~~~~~l-~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~ 94 (139)
..|+..++++|.+. ..|..|... +..+++.+.+|.+ ...|..+..++.|+.+++..|.+... +..+..+.++-.|+
T Consensus 53 ~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~nei-sdvPeE~Aam~aLr~lNl~~N~l~~~-p~vi~~L~~l~~Ld 129 (177)
T KOG4579|consen 53 YELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEI-SDVPEELAAMPALRSLNLRFNPLNAE-PRVIAPLIKLDMLD 129 (177)
T ss_pred ceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhh-hhchHHHhhhHHhhhcccccCccccc-hHHHHHHHhHHHhc
Confidence 34445566666665 444445443 3566666666666 44455566666666666666666433 23233355666666
Q ss_pred cCCCcc
Q 040935 95 LSNNQF 100 (139)
Q Consensus 95 l~~n~~ 100 (139)
..+|..
T Consensus 130 s~~na~ 135 (177)
T KOG4579|consen 130 SPENAR 135 (177)
T ss_pred CCCCcc
Confidence 666554
No 48
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=97.99 E-value=2.1e-06 Score=59.30 Aligned_cols=88 Identities=25% Similarity=0.090 Sum_probs=53.2
Q ss_pred cccCCCCccEEEccCCcceeech--hhhccccccceeEeeccccccCcCccc-cCCCCccEEEccCCcccccch-Hhhhc
Q 040935 11 EIGDLSKLQVLDLSSNHIVGEIR--VQLGKLFSLNKLILNMNQLYGGMPLKL-DSLTKLQYLDLSANKLWSLIL-ENIDN 86 (139)
Q Consensus 11 ~~~~l~~L~~l~l~~~~~~~~~~--~~~~~l~~L~~l~l~~~~~~~~~~~~~-~~~~~L~~l~l~~n~~~~~~~-~~~~~ 86 (139)
....+++++.|+++.|-+..+.+ ....++++|+.|.++.|++........ ..+..++.|.++.|.+++... .....
T Consensus 141 ~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~ 220 (505)
T KOG3207|consen 141 YSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLT 220 (505)
T ss_pred hhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHh
Confidence 45567888888888876553322 244667888888888887743222221 245567777777777765332 22334
Q ss_pred cccccEEecCCC
Q 040935 87 LLKLCYLNLSNN 98 (139)
Q Consensus 87 ~~~L~~l~l~~n 98 (139)
+|++..|.+..|
T Consensus 221 fPsl~~L~L~~N 232 (505)
T KOG3207|consen 221 FPSLEVLYLEAN 232 (505)
T ss_pred CCcHHHhhhhcc
Confidence 555555555555
No 49
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.95 E-value=1.4e-06 Score=58.45 Aligned_cols=14 Identities=57% Similarity=0.610 Sum_probs=6.2
Q ss_pred CCCCccEEEccCCc
Q 040935 14 DLSKLQVLDLSSNH 27 (139)
Q Consensus 14 ~l~~L~~l~l~~~~ 27 (139)
.++.|+.++++.|.
T Consensus 90 ~~~~L~~ldLSDNA 103 (382)
T KOG1909|consen 90 GCPKLQKLDLSDNA 103 (382)
T ss_pred cCCceeEeeccccc
Confidence 33344444444443
No 50
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.90 E-value=1e-05 Score=52.39 Aligned_cols=113 Identities=25% Similarity=0.248 Sum_probs=78.0
Q ss_pred CCccccCCCCccEEEccCCcceeechhhhccccccceeEeecc--ccccCcCccccCCCCccEEEccCCcccccc-hHhh
Q 040935 8 IPLEIGDLSKLQVLDLSSNHIVGEIRVQLGKLFSLNKLILNMN--QLYGGMPLKLDSLTKLQYLDLSANKLWSLI-LENI 84 (139)
Q Consensus 8 ~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~~--~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~-~~~~ 84 (139)
+......+..++.+.+.+.+++. . ..+..+++|+.|.++.| ++....+-....+++|+++++++|+++.+. ...+
T Consensus 35 ~~gl~d~~~~le~ls~~n~gltt-~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl 112 (260)
T KOG2739|consen 35 LGGLTDEFVELELLSVINVGLTT-L-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPL 112 (260)
T ss_pred cccccccccchhhhhhhccceee-c-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchh
Confidence 44444566777888888888762 2 24677889999999999 554444444456699999999999997521 1234
Q ss_pred hccccccEEecCCCccccc---CchhhhccCCCCeEEccCc
Q 040935 85 DNLLKLCYLNLSNNQFIQK---IPIELEKLIPLSELDLNYN 122 (139)
Q Consensus 85 ~~~~~L~~l~l~~n~~~~~---~~~~~~~~~~L~~l~l~~n 122 (139)
..+.+|..|++++|..+.. -...+.-+++|..+|-.+-
T Consensus 113 ~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv 153 (260)
T KOG2739|consen 113 KELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDV 153 (260)
T ss_pred hhhcchhhhhcccCCccccccHHHHHHHHhhhhcccccccc
Confidence 4667788899988876542 2335666778888775543
No 51
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.81 E-value=1.3e-06 Score=57.30 Aligned_cols=101 Identities=29% Similarity=0.219 Sum_probs=79.4
Q ss_pred CCCCccEEEccCCcceeechhhhccccccceeEeeccccccCcCccccCCCCccEEEccCCcccccch-HhhhccccccE
Q 040935 14 DLSKLQVLDLSSNHIVGEIRVQLGKLFSLNKLILNMNQLYGGMPLKLDSLTKLQYLDLSANKLWSLIL-ENIDNLLKLCY 92 (139)
Q Consensus 14 ~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~-~~~~~~~~L~~ 92 (139)
.+.+.+.|+.-|+++.+ + .....++.|++|.++-|.|++. ..+..|.+|+.+.|..|.|.+... ..+.++++|+.
T Consensus 17 dl~~vkKLNcwg~~L~D-I-sic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~ 92 (388)
T KOG2123|consen 17 DLENVKKLNCWGCGLDD-I-SICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRT 92 (388)
T ss_pred HHHHhhhhcccCCCccH-H-HHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhh
Confidence 35567788899998873 2 2456799999999999999554 456789999999999999987643 56789999999
Q ss_pred EecCCCcccccCch-----hhhccCCCCeEE
Q 040935 93 LNLSNNQFIQKIPI-----ELEKLIPLSELD 118 (139)
Q Consensus 93 l~l~~n~~~~~~~~-----~~~~~~~L~~l~ 118 (139)
|.+..|+..+.-+. .+..+++|+.||
T Consensus 93 LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 93 LWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred HhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 99999998776443 456778888876
No 52
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.79 E-value=3.3e-06 Score=59.13 Aligned_cols=107 Identities=40% Similarity=0.387 Sum_probs=75.4
Q ss_pred CCCccEEEccCCcceeechhhhccccccceeEeeccccccCcCccccCCCCccEEEccCCcccccchHhhhccccccEEe
Q 040935 15 LSKLQVLDLSSNHIVGEIRVQLGKLFSLNKLILNMNQLYGGMPLKLDSLTKLQYLDLSANKLWSLILENIDNLLKLCYLN 94 (139)
Q Consensus 15 l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~ 94 (139)
+..+..+.+..+.+. ..-..+..+..+..+++.+|.+. .+...+..+.+|++++++.|.++... .+..++.|+.|+
T Consensus 71 l~~l~~l~l~~n~i~-~~~~~l~~~~~l~~l~l~~n~i~-~i~~~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~ 146 (414)
T KOG0531|consen 71 LTSLKELNLRQNLIA-KILNHLSKLKSLEALDLYDNKIE-KIENLLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKELN 146 (414)
T ss_pred hHhHHhhccchhhhh-hhhcccccccceeeeeccccchh-hcccchhhhhcchheecccccccccc--chhhccchhhhe
Confidence 344445556666665 22334667778888999999884 33333677889999999999997653 344566789999
Q ss_pred cCCCcccccCchhhhccCCCCeEEccCcccccc
Q 040935 95 LSNNQFIQKIPIELEKLIPLSELDLNYNFLDVE 127 (139)
Q Consensus 95 l~~n~~~~~~~~~~~~~~~L~~l~l~~n~l~~~ 127 (139)
+.+|.++.. ..+..++.|+.+++++|.++..
T Consensus 147 l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~i 177 (414)
T KOG0531|consen 147 LSGNLISDI--SGLESLKSLKLLDLSYNRIVDI 177 (414)
T ss_pred eccCcchhc--cCCccchhhhcccCCcchhhhh
Confidence 999988543 3455688889999999988733
No 53
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=97.70 E-value=5.8e-06 Score=57.18 Aligned_cols=110 Identities=27% Similarity=0.179 Sum_probs=52.8
Q ss_pred CCccEEEccCCcceeech-hhhccccccceeEeeccccccCcCccccCCCCccEEEccCCcccccch-HhhhccccccEE
Q 040935 16 SKLQVLDLSSNHIVGEIR-VQLGKLFSLNKLILNMNQLYGGMPLKLDSLTKLQYLDLSANKLWSLIL-ENIDNLLKLCYL 93 (139)
Q Consensus 16 ~~L~~l~l~~~~~~~~~~-~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~-~~~~~~~~L~~l 93 (139)
+.++.|.++.|+++-.-. .....+|.+..|+++.|..-..-.....-+..|+.|++++|++.+... -..+.++.|+.+
T Consensus 197 ~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~L 276 (505)
T KOG3207|consen 197 SHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQL 276 (505)
T ss_pred hhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhh
Confidence 344455555555442111 122345555555555553111111111223456666666666654432 224456666666
Q ss_pred ecCCCcccccC-chh-----hhccCCCCeEEccCcccc
Q 040935 94 NLSNNQFIQKI-PIE-----LEKLIPLSELDLNYNFLD 125 (139)
Q Consensus 94 ~l~~n~~~~~~-~~~-----~~~~~~L~~l~l~~n~l~ 125 (139)
.++.+.+...- |.. .-..++|+.|++..|++.
T Consensus 277 nls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~ 314 (505)
T KOG3207|consen 277 NLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIR 314 (505)
T ss_pred hccccCcchhcCCCccchhhhcccccceeeecccCccc
Confidence 66666554321 111 123457777777777775
No 54
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.68 E-value=4.4e-05 Score=56.67 Aligned_cols=109 Identities=20% Similarity=0.117 Sum_probs=48.3
Q ss_pred CCCccEEEccCCcce-eechhhhccccccceeEeeccccccCcCccccCCCCccEEEccCCcccc-cchHhhhccccccE
Q 040935 15 LSKLQVLDLSSNHIV-GEIRVQLGKLFSLNKLILNMNQLYGGMPLKLDSLTKLQYLDLSANKLWS-LILENIDNLLKLCY 92 (139)
Q Consensus 15 l~~L~~l~l~~~~~~-~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~-~~~~~~~~~~~L~~ 92 (139)
+|.|+.|.+.+..+. ++......++++|..||+++..++.. ..++.+.+|+.|.+.+=.+.. .....+..+.+|+.
T Consensus 147 LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~v 224 (699)
T KOG3665|consen 147 LPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRV 224 (699)
T ss_pred CcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCe
Confidence 455555555554432 12233334455555555555555222 334455555555444433322 11122445556666
Q ss_pred EecCCCcccccC--ch----hhhccCCCCeEEccCcccc
Q 040935 93 LNLSNNQFIQKI--PI----ELEKLIPLSELDLNYNFLD 125 (139)
Q Consensus 93 l~l~~n~~~~~~--~~----~~~~~~~L~~l~l~~n~l~ 125 (139)
||++........ .. --..++.|+.||.+++.+.
T Consensus 225 LDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~ 263 (699)
T KOG3665|consen 225 LDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDIN 263 (699)
T ss_pred eeccccccccchHHHHHHHHhcccCccccEEecCCcchh
Confidence 665544322111 00 0123455566666555544
No 55
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.67 E-value=3.1e-05 Score=57.46 Aligned_cols=108 Identities=26% Similarity=0.295 Sum_probs=76.9
Q ss_pred CCccEEEccCCcc-eeechhhh-ccccccceeEeeccccccCc-CccccCCCCccEEEccCCcccccchHhhhccccccE
Q 040935 16 SKLQVLDLSSNHI-VGEIRVQL-GKLFSLNKLILNMNQLYGGM-PLKLDSLTKLQYLDLSANKLWSLILENIDNLLKLCY 92 (139)
Q Consensus 16 ~~L~~l~l~~~~~-~~~~~~~~-~~l~~L~~l~l~~~~~~~~~-~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~ 92 (139)
.+|++|++.|... ....+..+ .-+|.|+.|.+.+-.+.... ......+++|..||+++.+++.. ...+.+.+|+.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence 4678888888542 11233333 45889999999887663222 23335788999999999999765 55778899999
Q ss_pred EecCCCcccc-cCchhhhccCCCCeEEccCcccc
Q 040935 93 LNLSNNQFIQ-KIPIELEKLIPLSELDLNYNFLD 125 (139)
Q Consensus 93 l~l~~n~~~~-~~~~~~~~~~~L~~l~l~~n~l~ 125 (139)
|.+++-.+.. ..-..+..+++|++||++.....
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~ 233 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNN 233 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccc
Confidence 9888876643 23346789999999999887543
No 56
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.64 E-value=0.00015 Score=47.90 Aligned_cols=116 Identities=22% Similarity=0.101 Sum_probs=78.3
Q ss_pred ccccCCCCccEEEccCCcceeechh----hhccccccceeEeeccccccCcCcc-------------ccCCCCccEEEcc
Q 040935 10 LEIGDLSKLQVLDLSSNHIVGEIRV----QLGKLFSLNKLILNMNQLYGGMPLK-------------LDSLTKLQYLDLS 72 (139)
Q Consensus 10 ~~~~~l~~L~~l~l~~~~~~~~~~~----~~~~l~~L~~l~l~~~~~~~~~~~~-------------~~~~~~L~~l~l~ 72 (139)
+++.+|+.++.++++.|.+....|. .++..+.+..|.+++|.+...--.. ...-|.|+++...
T Consensus 86 ~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicg 165 (388)
T COG5238 86 KALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICG 165 (388)
T ss_pred HHHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEec
Confidence 4567889999999999887655444 4556677889999988774222111 1245678888888
Q ss_pred CCcccccchH----hhhccccccEEecCCCcccccC-----chhhhccCCCCeEEccCcccc
Q 040935 73 ANKLWSLILE----NIDNLLKLCYLNLSNNQFIQKI-----PIELEKLIPLSELDLNYNFLD 125 (139)
Q Consensus 73 ~n~~~~~~~~----~~~~~~~L~~l~l~~n~~~~~~-----~~~~~~~~~L~~l~l~~n~l~ 125 (139)
+|++...... .+.....|+.+.+..|.+...- ...+..+.+|++||+.+|-++
T Consensus 166 rNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft 227 (388)
T COG5238 166 RNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFT 227 (388)
T ss_pred cchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchh
Confidence 8887654332 3444567888888888774331 113466788899999988765
No 57
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=97.55 E-value=4.1e-05 Score=30.60 Aligned_cols=22 Identities=41% Similarity=0.483 Sum_probs=16.9
Q ss_pred CCCeEEccCcccccccCccccCc
Q 040935 113 PLSELDLNYNFLDVEIPFQICNM 135 (139)
Q Consensus 113 ~L~~l~l~~n~l~~~~p~~~~~~ 135 (139)
+|++|++++|.++ .+|++|++|
T Consensus 1 ~L~~Ldls~n~l~-~ip~~~~~l 22 (22)
T PF00560_consen 1 NLEYLDLSGNNLT-SIPSSFSNL 22 (22)
T ss_dssp TESEEEETSSEES-EEGTTTTT-
T ss_pred CccEEECCCCcCE-eCChhhcCC
Confidence 4678899999888 888877654
No 58
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.32 E-value=0.0014 Score=38.19 Aligned_cols=103 Identities=14% Similarity=0.131 Sum_probs=57.8
Q ss_pred cCCccccCCCCccEEEccCCcceeechhhhccccccceeEeeccccccCcCccccCCCCccEEEccCCcccccchHhhhc
Q 040935 7 SIPLEIGDLSKLQVLDLSSNHIVGEIRVQLGKLFSLNKLILNMNQLYGGMPLKLDSLTKLQYLDLSANKLWSLILENIDN 86 (139)
Q Consensus 7 ~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~ 86 (139)
.-..+|..+..++.+.+.++ +.......|..+..++.+.+.. .+.......|..+..++.+.+..+ +.......+..
T Consensus 26 I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~~-~~~i~~~~f~~ 102 (129)
T PF13306_consen 26 IGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIPSN-ITEIGSSSFSN 102 (129)
T ss_dssp E-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEETTT--BEEHTTTTTT
T ss_pred eChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccccccCcc-ccEEchhhhcC
Confidence 33457888889999999885 6556677888888899999976 443455667788999999999775 65555666777
Q ss_pred cccccEEecCCCcccccCchhhhccCCC
Q 040935 87 LLKLCYLNLSNNQFIQKIPIELEKLIPL 114 (139)
Q Consensus 87 ~~~L~~l~l~~n~~~~~~~~~~~~~~~L 114 (139)
. .++.+.+..+ +.......+..+++|
T Consensus 103 ~-~l~~i~~~~~-~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 103 C-NLKEINIPSN-ITKIEENAFKNCTKL 128 (129)
T ss_dssp --T--EEE-TTB--SS----GGG-----
T ss_pred C-CceEEEECCC-ccEECCccccccccC
Confidence 5 8888887653 222333345555444
No 59
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.21 E-value=0.0014 Score=45.93 Aligned_cols=55 Identities=13% Similarity=0.102 Sum_probs=31.3
Q ss_pred cCCCCccEEEccCCcceeechhhhcccc-ccceeEeeccccccCcCccccCCCCccEEEccCC
Q 040935 13 GDLSKLQVLDLSSNHIVGEIRVQLGKLF-SLNKLILNMNQLYGGMPLKLDSLTKLQYLDLSAN 74 (139)
Q Consensus 13 ~~l~~L~~l~l~~~~~~~~~~~~~~~l~-~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n 74 (139)
..+.+++.|++++|.+. .+| .++ +|+.|.+.++.-....|+.+ ..+|+.|.+.+|
T Consensus 49 ~~~~~l~~L~Is~c~L~-sLP----~LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~C 104 (426)
T PRK15386 49 EEARASGRLYIKDCDIE-SLP----VLPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHC 104 (426)
T ss_pred HHhcCCCEEEeCCCCCc-ccC----CCCCCCcEEEccCCCCcccCCchh--hhhhhheEccCc
Confidence 34567778888887766 444 223 47777776643334444433 235666666655
No 60
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.77 E-value=0.00059 Score=45.69 Aligned_cols=86 Identities=28% Similarity=0.296 Sum_probs=55.5
Q ss_pred CCCccEEEccCCcceee--chhhhccccccceeEeeccccccCcCccccCCCCccEEEccCCcccccch-Hhhhcccccc
Q 040935 15 LSKLQVLDLSSNHIVGE--IRVQLGKLFSLNKLILNMNQLYGGMPLKLDSLTKLQYLDLSANKLWSLIL-ENIDNLLKLC 91 (139)
Q Consensus 15 l~~L~~l~l~~~~~~~~--~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~-~~~~~~~~L~ 91 (139)
...++.+++.+|.++++ ....+.++|.+++|.++.|.+...+...-....+|+++-+++..+.+... ..+..+|.++
T Consensus 70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vt 149 (418)
T KOG2982|consen 70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVT 149 (418)
T ss_pred hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhh
Confidence 34556677888877743 22345678888888888887754332221355678888888887776543 3455677777
Q ss_pred EEecCCCcc
Q 040935 92 YLNLSNNQF 100 (139)
Q Consensus 92 ~l~l~~n~~ 100 (139)
.++++.|.+
T Consensus 150 elHmS~N~~ 158 (418)
T KOG2982|consen 150 ELHMSDNSL 158 (418)
T ss_pred hhhhccchh
Confidence 777777744
No 61
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.74 E-value=0.00087 Score=43.67 Aligned_cols=88 Identities=27% Similarity=0.238 Sum_probs=63.1
Q ss_pred cccCCCCccEEEccCC--cceeechhhhccccccceeEeeccccccC-cCccccCCCCccEEEccCCcccc---cchHhh
Q 040935 11 EIGDLSKLQVLDLSSN--HIVGEIRVQLGKLFSLNKLILNMNQLYGG-MPLKLDSLTKLQYLDLSANKLWS---LILENI 84 (139)
Q Consensus 11 ~~~~l~~L~~l~l~~~--~~~~~~~~~~~~l~~L~~l~l~~~~~~~~-~~~~~~~~~~L~~l~l~~n~~~~---~~~~~~ 84 (139)
.+..+++|+.|.++.| ++....+.....+++|+++.+++|.+... .-..+..+.+|..+++.+|..+. -....|
T Consensus 60 ~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf 139 (260)
T KOG2739|consen 60 NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTNLDDYREKVF 139 (260)
T ss_pred cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCccccccHHHHHH
Confidence 4567889999999999 66666666666679999999999998421 11233456677888888886654 334567
Q ss_pred hccccccEEecCCC
Q 040935 85 DNLLKLCYLNLSNN 98 (139)
Q Consensus 85 ~~~~~L~~l~l~~n 98 (139)
..+++|+.++-.+.
T Consensus 140 ~ll~~L~~LD~~dv 153 (260)
T KOG2739|consen 140 LLLPSLKYLDGCDV 153 (260)
T ss_pred HHhhhhcccccccc
Confidence 78889988875443
No 62
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.50 E-value=0.001 Score=44.10 Aligned_cols=117 Identities=22% Similarity=0.172 Sum_probs=79.3
Q ss_pred ccccCCCCccEEEccCCcceeechhhh-------------ccccccceeEeeccccccCcC----ccccCCCCccEEEcc
Q 040935 10 LEIGDLSKLQVLDLSSNHIVGEIRVQL-------------GKLFSLNKLILNMNQLYGGMP----LKLDSLTKLQYLDLS 72 (139)
Q Consensus 10 ~~~~~l~~L~~l~l~~~~~~~~~~~~~-------------~~l~~L~~l~l~~~~~~~~~~----~~~~~~~~L~~l~l~ 72 (139)
+.+++-+.+.+|.+++|++.......+ .+-|.|+++....|++..... ..+.....++.+.+.
T Consensus 114 d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~ 193 (388)
T COG5238 114 DLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENLKEVKIQ 193 (388)
T ss_pred HHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCceeEEee
Confidence 356778899999999998764332222 346778899999998843211 122334568888999
Q ss_pred CCcccccchH-----hhhccccccEEecCCCccccc----CchhhhccCCCCeEEccCccccc
Q 040935 73 ANKLWSLILE-----NIDNLLKLCYLNLSNNQFIQK----IPIELEKLIPLSELDLNYNFLDV 126 (139)
Q Consensus 73 ~n~~~~~~~~-----~~~~~~~L~~l~l~~n~~~~~----~~~~~~~~~~L~~l~l~~n~l~~ 126 (139)
.|.+...... .+....+|..|++++|-++-. +...+..|+.|+.|.+++|-++.
T Consensus 194 qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~ 256 (388)
T COG5238 194 QNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSN 256 (388)
T ss_pred ecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhcc
Confidence 9988644221 233567899999999977532 33356778888899888886653
No 63
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.38 E-value=0.00029 Score=46.67 Aligned_cols=81 Identities=26% Similarity=0.173 Sum_probs=63.8
Q ss_pred ccCCCCccEEEccCCcceeechhhhccccccceeEeeccccccCcC-ccccCCCCccEEEccCCcccccch-----Hhhh
Q 040935 12 IGDLSKLQVLDLSSNHIVGEIRVQLGKLFSLNKLILNMNQLYGGMP-LKLDSLTKLQYLDLSANKLWSLIL-----ENID 85 (139)
Q Consensus 12 ~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~-~~~~~~~~L~~l~l~~n~~~~~~~-----~~~~ 85 (139)
..+|+.|+.|.++-|.++...| +..+..|+.+++..|.|..... .-+.++++|+.|.+..|...+... ..+.
T Consensus 37 c~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR 114 (388)
T KOG2123|consen 37 CEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLR 114 (388)
T ss_pred HHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCcccccchhHHHHHHH
Confidence 4579999999999999985444 6789999999999999965432 445789999999999998866433 3456
Q ss_pred ccccccEEe
Q 040935 86 NLLKLCYLN 94 (139)
Q Consensus 86 ~~~~L~~l~ 94 (139)
.+++|+.||
T Consensus 115 ~LPnLkKLD 123 (388)
T KOG2123|consen 115 VLPNLKKLD 123 (388)
T ss_pred Hcccchhcc
Confidence 778888886
No 64
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=96.35 E-value=0.0026 Score=23.56 Aligned_cols=16 Identities=44% Similarity=0.630 Sum_probs=7.8
Q ss_pred CCCeEEccCcccccccC
Q 040935 113 PLSELDLNYNFLDVEIP 129 (139)
Q Consensus 113 ~L~~l~l~~n~l~~~~p 129 (139)
+|+.|++++|.++ .+|
T Consensus 2 ~L~~L~l~~n~L~-~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLT-SLP 17 (17)
T ss_dssp T-SEEEETSS--S-SE-
T ss_pred ccCEEECCCCCCC-CCc
Confidence 5667777777765 443
No 65
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.34 E-value=0.0012 Score=44.33 Aligned_cols=85 Identities=26% Similarity=0.188 Sum_probs=47.4
Q ss_pred ccccceeEeeccccccC--cCccccCCCCccEEEccCCcccccchHhhhccccccEEecCCCccccc-CchhhhccCCCC
Q 040935 39 LFSLNKLILNMNQLYGG--MPLKLDSLTKLQYLDLSANKLWSLILENIDNLLKLCYLNLSNNQFIQK-IPIELEKLIPLS 115 (139)
Q Consensus 39 l~~L~~l~l~~~~~~~~--~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~~~-~~~~~~~~~~L~ 115 (139)
...++.+++.+|.++.. +...+..+|.+++++++.|++.......--...+|+.+-+.+..+... ....+..++.++
T Consensus 70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vt 149 (418)
T KOG2982|consen 70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVT 149 (418)
T ss_pred hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhh
Confidence 33466677777777432 122335677777777777777543222112445677777766655322 122345556666
Q ss_pred eEEccCcc
Q 040935 116 ELDLNYNF 123 (139)
Q Consensus 116 ~l~l~~n~ 123 (139)
.|.++.|.
T Consensus 150 elHmS~N~ 157 (418)
T KOG2982|consen 150 ELHMSDNS 157 (418)
T ss_pred hhhhccch
Confidence 66666663
No 66
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=95.71 E-value=0.0016 Score=43.76 Aligned_cols=40 Identities=25% Similarity=0.237 Sum_probs=17.4
Q ss_pred cCCCCccEEEccCCc-ceee-chhhhccccccceeEeecccc
Q 040935 13 GDLSKLQVLDLSSNH-IVGE-IRVQLGKLFSLNKLILNMNQL 52 (139)
Q Consensus 13 ~~l~~L~~l~l~~~~-~~~~-~~~~~~~l~~L~~l~l~~~~~ 52 (139)
++-.+|+.++++.+. ++.. ..--+.++..|+.|.++++..
T Consensus 231 AkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l 272 (419)
T KOG2120|consen 231 AKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFL 272 (419)
T ss_pred hccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhc
Confidence 334455555555542 2211 111234455555555555544
No 67
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=95.65 E-value=0.01 Score=24.36 Aligned_cols=20 Identities=40% Similarity=0.448 Sum_probs=14.2
Q ss_pred CCCCeEEccCcccccccCccc
Q 040935 112 IPLSELDLNYNFLDVEIPFQI 132 (139)
Q Consensus 112 ~~L~~l~l~~n~l~~~~p~~~ 132 (139)
++|+.|++++|.+. .+|+..
T Consensus 2 ~~L~~L~L~~N~l~-~lp~~~ 21 (26)
T smart00369 2 PNLRELDLSNNQLS-SLPPGA 21 (26)
T ss_pred CCCCEEECCCCcCC-cCCHHH
Confidence 56778888888887 666544
No 68
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=95.65 E-value=0.01 Score=24.36 Aligned_cols=20 Identities=40% Similarity=0.448 Sum_probs=14.2
Q ss_pred CCCCeEEccCcccccccCccc
Q 040935 112 IPLSELDLNYNFLDVEIPFQI 132 (139)
Q Consensus 112 ~~L~~l~l~~n~l~~~~p~~~ 132 (139)
++|+.|++++|.+. .+|+..
T Consensus 2 ~~L~~L~L~~N~l~-~lp~~~ 21 (26)
T smart00370 2 PNLRELDLSNNQLS-SLPPGA 21 (26)
T ss_pred CCCCEEECCCCcCC-cCCHHH
Confidence 56778888888887 666544
No 69
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=95.51 E-value=0.0018 Score=43.50 Aligned_cols=109 Identities=24% Similarity=0.116 Sum_probs=64.3
Q ss_pred ccCCCCccEEEccCCcceeechhhhcc--ccccceeEeeccccc---cCcCccccCCCCccEEEccCCc-ccccchHhhh
Q 040935 12 IGDLSKLQVLDLSSNHIVGEIRVQLGK--LFSLNKLILNMNQLY---GGMPLKLDSLTKLQYLDLSANK-LWSLILENID 85 (139)
Q Consensus 12 ~~~l~~L~~l~l~~~~~~~~~~~~~~~--l~~L~~l~l~~~~~~---~~~~~~~~~~~~L~~l~l~~n~-~~~~~~~~~~ 85 (139)
+.++..|..|+++.|......-..+.. -+.+..|.+++++-. ..+..-...++++.+++++++- ++...-..+.
T Consensus 256 ~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~ 335 (419)
T KOG2120|consen 256 LSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFF 335 (419)
T ss_pred HHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHH
Confidence 456778888888888765433322222 235666777666421 1111122467888888888764 3332233456
Q ss_pred ccccccEEecCCCcccccCch---hhhccCCCCeEEccCc
Q 040935 86 NLLKLCYLNLSNNQFIQKIPI---ELEKLIPLSELDLNYN 122 (139)
Q Consensus 86 ~~~~L~~l~l~~n~~~~~~~~---~~~~~~~L~~l~l~~n 122 (139)
.++.|+++++..|.. .+|. .+...+.|..|++.++
T Consensus 336 kf~~L~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 336 KFNYLQHLSLSRCYD--IIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred hcchheeeehhhhcC--CChHHeeeeccCcceEEEEeccc
Confidence 677888888877753 3444 3456677777776654
No 70
>PRK15386 type III secretion protein GogB; Provisional
Probab=95.51 E-value=0.039 Score=38.95 Aligned_cols=87 Identities=11% Similarity=0.221 Sum_probs=53.6
Q ss_pred hhccccccceeEeeccccccCcCccccCCCCccEEEccCCcccccchHhhhccccccEEecCCC-cccccCchhhhccCC
Q 040935 35 QLGKLFSLNKLILNMNQLYGGMPLKLDSLTKLQYLDLSANKLWSLILENIDNLLKLCYLNLSNN-QFIQKIPIELEKLIP 113 (139)
Q Consensus 35 ~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n-~~~~~~~~~~~~~~~ 113 (139)
.+..+.++..|++++|.+ ..+|. -..+|++|.+.++.--...|+.+ .++|+.|.+.+| .+ ..+|. .
T Consensus 47 r~~~~~~l~~L~Is~c~L-~sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L-~sLP~------s 113 (426)
T PRK15386 47 QIEEARASGRLYIKDCDI-ESLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEI-SGLPE------S 113 (426)
T ss_pred HHHHhcCCCEEEeCCCCC-cccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccc-ccccc------c
Confidence 455578899999999987 44452 23469999998754334444434 268899999887 44 33443 4
Q ss_pred CCeEEccCcc---cccccCccccCc
Q 040935 114 LSELDLNYNF---LDVEIPFQICNM 135 (139)
Q Consensus 114 L~~l~l~~n~---l~~~~p~~~~~~ 135 (139)
|+.|++..+. +. .+|.++..+
T Consensus 114 Le~L~L~~n~~~~L~-~LPssLk~L 137 (426)
T PRK15386 114 VRSLEIKGSATDSIK-NVPNGLTSL 137 (426)
T ss_pred cceEEeCCCCCcccc-cCcchHhhe
Confidence 5555555543 32 556554433
No 71
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=95.46 E-value=0.0025 Score=25.77 Aligned_cols=19 Identities=32% Similarity=0.186 Sum_probs=10.3
Q ss_pred CCCCeEEccCcccccccCc
Q 040935 112 IPLSELDLNYNFLDVEIPF 130 (139)
Q Consensus 112 ~~L~~l~l~~n~l~~~~p~ 130 (139)
++|++|++++|.+++....
T Consensus 2 ~~L~~L~l~~n~i~~~g~~ 20 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEGAS 20 (24)
T ss_dssp TT-SEEE-TSSBEHHHHHH
T ss_pred CCCCEEEccCCcCCHHHHH
Confidence 4566777777766654443
No 72
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.01 E-value=0.008 Score=38.06 Aligned_cols=81 Identities=21% Similarity=0.125 Sum_probs=45.5
Q ss_pred ccceeEeeccccccCcCccccCCCCccEEEccCCccc-ccchHhhh-ccccccEEecCCCc-ccccCchhhhccCCCCeE
Q 040935 41 SLNKLILNMNQLYGGMPLKLDSLTKLQYLDLSANKLW-SLILENID-NLLKLCYLNLSNNQ-FIQKIPIELEKLIPLSEL 117 (139)
Q Consensus 41 ~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~-~~~~~~~~-~~~~L~~l~l~~n~-~~~~~~~~~~~~~~L~~l 117 (139)
.++.++.++..+...--+.+.++.+++.+.+.++.-. +-..+-++ ..++|+.|++.+|. +|+.-...+..+++|+.|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 3556666666665555566666677777666665432 11111121 34677777777553 554444455666666666
Q ss_pred EccC
Q 040935 118 DLNY 121 (139)
Q Consensus 118 ~l~~ 121 (139)
.+.+
T Consensus 182 ~l~~ 185 (221)
T KOG3864|consen 182 HLYD 185 (221)
T ss_pred HhcC
Confidence 6544
No 73
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.88 E-value=0.0044 Score=39.19 Aligned_cols=36 Identities=25% Similarity=0.310 Sum_probs=19.7
Q ss_pred CCccEEEccCCcccccchHhhhccccccEEecCCCc
Q 040935 64 TKLQYLDLSANKLWSLILENIDNLLKLCYLNLSNNQ 99 (139)
Q Consensus 64 ~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~ 99 (139)
..++.++-++..+....-+.+..++.++.+.+.+|.
T Consensus 101 ~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck 136 (221)
T KOG3864|consen 101 VKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCK 136 (221)
T ss_pred ceEEEEecCCchHHHHHHHHHhccchhhhheecccc
Confidence 345555555555555555555555555555555553
No 74
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=92.32 E-value=0.0024 Score=41.48 Aligned_cols=87 Identities=18% Similarity=0.122 Sum_probs=50.3
Q ss_pred ccccceeEeeccccccCcCccccCCCCccEEEccCCcccccchHhhhccccccEEecCCCcccccCchhhhccCCCCeEE
Q 040935 39 LFSLNKLILNMNQLYGGMPLKLDSLTKLQYLDLSANKLWSLILENIDNLLKLCYLNLSNNQFIQKIPIELEKLIPLSELD 118 (139)
Q Consensus 39 l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~ 118 (139)
....+.+|++.|+. .-+-..|+-+.++..++++.|.+.-. |..++....+++++...|.. ...|...+..+.++.++
T Consensus 41 ~kr~tvld~~s~r~-vn~~~n~s~~t~~~rl~~sknq~~~~-~~d~~q~~e~~~~~~~~n~~-~~~p~s~~k~~~~k~~e 117 (326)
T KOG0473|consen 41 FKRVTVLDLSSNRL-VNLGKNFSILTRLVRLDLSKNQIKFL-PKDAKQQRETVNAASHKNNH-SQQPKSQKKEPHPKKNE 117 (326)
T ss_pred cceeeeehhhhhHH-HhhccchHHHHHHHHHhccHhhHhhC-hhhHHHHHHHHHHHhhccch-hhCCccccccCCcchhh
Confidence 33455566666655 34445555566666666666666433 33355556666666666665 34555666666666666
Q ss_pred ccCccccccc
Q 040935 119 LNYNFLDVEI 128 (139)
Q Consensus 119 l~~n~l~~~~ 128 (139)
...|.+...+
T Consensus 118 ~k~~~~~~~~ 127 (326)
T KOG0473|consen 118 QKKTEFFRKL 127 (326)
T ss_pred hccCcchHHH
Confidence 6666655333
No 75
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=92.17 E-value=0.11 Score=36.92 Aligned_cols=109 Identities=27% Similarity=0.166 Sum_probs=61.3
Q ss_pred CCCccEEEccCCcceee--chhhhccccccceeEeecc-ccccCc----CccccCCCCccEEEccCCc-ccccchHhhh-
Q 040935 15 LSKLQVLDLSSNHIVGE--IRVQLGKLFSLNKLILNMN-QLYGGM----PLKLDSLTKLQYLDLSANK-LWSLILENID- 85 (139)
Q Consensus 15 l~~L~~l~l~~~~~~~~--~~~~~~~l~~L~~l~l~~~-~~~~~~----~~~~~~~~~L~~l~l~~n~-~~~~~~~~~~- 85 (139)
++.++.+.+.++.-... .......++.|+.++++++ ...... ......+..++++++..+. +++..-..+.
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 56666666666532222 2344566777888887763 111111 1223445677788887766 5544433333
Q ss_pred ccccccEEecCCCc-ccccCch-hhhccCCCCeEEccCcc
Q 040935 86 NLLKLCYLNLSNNQ-FIQKIPI-ELEKLIPLSELDLNYNF 123 (139)
Q Consensus 86 ~~~~L~~l~l~~n~-~~~~~~~-~~~~~~~L~~l~l~~n~ 123 (139)
..++|+.+.+..+. +++.--. ....++.|++++++.+.
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~ 306 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCH 306 (482)
T ss_pred hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCc
Confidence 35678888876666 4443222 33556678888887664
No 76
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=92.09 E-value=0.11 Score=21.51 Aligned_cols=18 Identities=33% Similarity=0.462 Sum_probs=14.2
Q ss_pred CCCCeEEccCcccccccCc
Q 040935 112 IPLSELDLNYNFLDVEIPF 130 (139)
Q Consensus 112 ~~L~~l~l~~n~l~~~~p~ 130 (139)
.+|+.|++++|.++ .+|+
T Consensus 2 ~~L~~L~vs~N~Lt-~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLT-SLPE 19 (26)
T ss_pred cccceeecCCCccc-cCcc
Confidence 36778888888887 7776
No 77
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=90.46 E-value=0.0091 Score=38.88 Aligned_cols=75 Identities=25% Similarity=0.247 Sum_probs=59.6
Q ss_pred cCCCCccEEEccCCcccccchHhhhccccccEEecCCCcccccCchhhhccCCCCeEEccCcccccccCccccCcCCC
Q 040935 61 DSLTKLQYLDLSANKLWSLILENIDNLLKLCYLNLSNNQFIQKIPIELEKLIPLSELDLNYNFLDVEIPFQICNMKSL 138 (139)
Q Consensus 61 ~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~p~~~~~~~~L 138 (139)
........++++.|++..... .+.-++.+..+++..|.+ .+.|...++...+..++...|..+ ..|.+++..+.+
T Consensus 39 ~~~kr~tvld~~s~r~vn~~~-n~s~~t~~~rl~~sknq~-~~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~ 113 (326)
T KOG0473|consen 39 ASFKRVTVLDLSSNRLVNLGK-NFSILTRLVRLDLSKNQI-KFLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHP 113 (326)
T ss_pred hccceeeeehhhhhHHHhhcc-chHHHHHHHHHhccHhhH-hhChhhHHHHHHHHHHHhhccchh-hCCccccccCCc
Confidence 344567788888888765433 366677888899998888 678888999999999999999998 889999887765
No 78
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=88.19 E-value=0.44 Score=19.88 Aligned_cols=15 Identities=47% Similarity=0.426 Sum_probs=12.0
Q ss_pred CCCCeEEccCccccc
Q 040935 112 IPLSELDLNYNFLDV 126 (139)
Q Consensus 112 ~~L~~l~l~~n~l~~ 126 (139)
++|++|++++|.+..
T Consensus 2 ~~L~~LdL~~N~i~~ 16 (28)
T smart00368 2 PSLRELDLSNNKLGD 16 (28)
T ss_pred CccCEEECCCCCCCH
Confidence 478889999998864
No 79
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=87.88 E-value=0.53 Score=19.44 Aligned_cols=14 Identities=43% Similarity=0.524 Sum_probs=10.5
Q ss_pred CCCCeEEccCcccc
Q 040935 112 IPLSELDLNYNFLD 125 (139)
Q Consensus 112 ~~L~~l~l~~n~l~ 125 (139)
++|+.|+++.|.|+
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 46778888888775
No 80
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=76.22 E-value=2.5 Score=31.24 Aligned_cols=12 Identities=58% Similarity=0.656 Sum_probs=6.3
Q ss_pred CCCccEEEccCC
Q 040935 63 LTKLQYLDLSAN 74 (139)
Q Consensus 63 ~~~L~~l~l~~n 74 (139)
.+.+.+|+|++|
T Consensus 243 apklk~L~LS~N 254 (585)
T KOG3763|consen 243 APKLKTLDLSHN 254 (585)
T ss_pred cchhheeecccc
Confidence 344555555555
No 81
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=70.98 E-value=3.9 Score=29.18 Aligned_cols=88 Identities=23% Similarity=0.061 Sum_probs=42.7
Q ss_pred cCCCCccEEEccCC-cceee----chhhhccccccceeEeeccc-cccCcCcccc-CCCCccEEEccCCc-ccccchH-h
Q 040935 13 GDLSKLQVLDLSSN-HIVGE----IRVQLGKLFSLNKLILNMNQ-LYGGMPLKLD-SLTKLQYLDLSANK-LWSLILE-N 83 (139)
Q Consensus 13 ~~l~~L~~l~l~~~-~~~~~----~~~~~~~l~~L~~l~l~~~~-~~~~~~~~~~-~~~~L~~l~l~~n~-~~~~~~~-~ 83 (139)
..++.|+.+.+.++ ..... .......+.+++.++++.+. ++...-..+. .+++|+.+.+..+. +++..-. .
T Consensus 211 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i 290 (482)
T KOG1947|consen 211 LKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSI 290 (482)
T ss_pred hhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHH
Confidence 45566667776652 11001 11122334556666666665 3322222222 35667777665555 4433322 2
Q ss_pred hhccccccEEecCCCcc
Q 040935 84 IDNLLKLCYLNLSNNQF 100 (139)
Q Consensus 84 ~~~~~~L~~l~l~~n~~ 100 (139)
....+.|+++++..+..
T Consensus 291 ~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 291 AERCPSLRELDLSGCHG 307 (482)
T ss_pred HHhcCcccEEeeecCcc
Confidence 33455677777765543
No 82
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=64.73 E-value=4.7 Score=29.95 Aligned_cols=11 Identities=55% Similarity=0.534 Sum_probs=5.3
Q ss_pred ccccEEecCCC
Q 040935 88 LKLCYLNLSNN 98 (139)
Q Consensus 88 ~~L~~l~l~~n 98 (139)
++|..|+|++|
T Consensus 244 pklk~L~LS~N 254 (585)
T KOG3763|consen 244 PKLKTLDLSHN 254 (585)
T ss_pred chhheeecccc
Confidence 44444444444
No 83
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=61.04 E-value=6.6 Score=15.72 Aligned_cols=16 Identities=31% Similarity=0.148 Sum_probs=11.4
Q ss_pred cCCCCeEEccCc-cccc
Q 040935 111 LIPLSELDLNYN-FLDV 126 (139)
Q Consensus 111 ~~~L~~l~l~~n-~l~~ 126 (139)
+++|+.|+++++ .+++
T Consensus 1 c~~L~~L~l~~C~~itD 17 (26)
T smart00367 1 CPNLRELDLSGCTNITD 17 (26)
T ss_pred CCCCCEeCCCCCCCcCH
Confidence 357888888888 3553
No 84
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=58.21 E-value=10 Score=27.45 Aligned_cols=36 Identities=25% Similarity=0.155 Sum_probs=16.7
Q ss_pred cccccEEecCCCccc-ccCchhhhccCCCCeEEccCc
Q 040935 87 LLKLCYLNLSNNQFI-QKIPIELEKLIPLSELDLNYN 122 (139)
Q Consensus 87 ~~~L~~l~l~~n~~~-~~~~~~~~~~~~L~~l~l~~n 122 (139)
+..+..+.+.+++.+ +...+.+..++.|+.+++-++
T Consensus 400 ~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~ 436 (483)
T KOG4341|consen 400 LEGLEVLELDNCPLITDATLEHLSICRNLERIELIDC 436 (483)
T ss_pred ccccceeeecCCCCchHHHHHHHhhCcccceeeeech
Confidence 344555555555432 222233445555555555444
No 85
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=55.65 E-value=8.6 Score=34.21 Aligned_cols=32 Identities=22% Similarity=0.099 Sum_probs=25.9
Q ss_pred EeeccccccCcCccccCCCCccEEEccCCccc
Q 040935 46 ILNMNQLYGGMPLKLDSLTKLQYLDLSANKLW 77 (139)
Q Consensus 46 ~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~ 77 (139)
+|++|.+..+.+..|..+.+|+.|+|.+|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 46788887777778888889999999988764
No 86
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=41.27 E-value=17 Score=32.64 Aligned_cols=31 Identities=26% Similarity=0.246 Sum_probs=27.1
Q ss_pred EccCCcceeechhhhccccccceeEeecccc
Q 040935 22 DLSSNHIVGEIRVQLGKLFSLNKLILNMNQL 52 (139)
Q Consensus 22 ~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~ 52 (139)
+|++|.++...+..|..+++|+.|+|++|.+
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw 31 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPF 31 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCcc
Confidence 4788999877778889999999999999977
No 87
>smart00446 LRRcap occurring C-terminal to leucine-rich repeats. A motif occurring C-terminal to leucine-rich repeats in "sds22-like" and "typical" LRR-containing proteins.
Probab=24.74 E-value=44 Score=13.77 Aligned_cols=14 Identities=29% Similarity=0.321 Sum_probs=10.1
Q ss_pred hhhccCCCCeEEcc
Q 040935 107 ELEKLIPLSELDLN 120 (139)
Q Consensus 107 ~~~~~~~L~~l~l~ 120 (139)
.+..+++|+.||..
T Consensus 8 Vi~~LPqL~~LD~~ 21 (26)
T smart00446 8 VIRLLPQLRKLDXX 21 (26)
T ss_pred HHHHCCccceeccc
Confidence 46677888888754
Done!