Query 040935
Match_columns 139
No_of_seqs 104 out of 1585
Neff 11.2
Searched_HMMs 29240
Date Mon Mar 25 21:35:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040935.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040935hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3m19_A Variable lymphocyte rec 99.9 1.8E-21 6.1E-26 125.6 12.4 139 1-139 44-182 (251)
2 1ogq_A PGIP-2, polygalacturona 99.9 3.7E-21 1.3E-25 127.7 11.5 134 2-135 60-197 (313)
3 1ogq_A PGIP-2, polygalacturona 99.9 2.9E-21 1E-25 128.2 10.8 137 2-139 87-224 (313)
4 3rgz_A Protein brassinosteroid 99.9 1E-20 3.5E-25 138.3 13.3 138 2-139 500-707 (768)
5 3rgz_A Protein brassinosteroid 99.8 1.2E-20 4.2E-25 137.9 12.0 138 2-139 404-541 (768)
6 2o6q_A Variable lymphocyte rec 99.8 6.3E-20 2.2E-24 119.5 12.7 124 2-125 47-170 (270)
7 1ozn_A Reticulon 4 receptor; N 99.8 4.1E-20 1.4E-24 121.1 11.9 40 11-50 51-90 (285)
8 4fcg_A Uncharacterized protein 99.8 2.6E-20 9E-25 124.4 10.7 123 15-139 182-304 (328)
9 2v9t_B SLIT homolog 2 protein 99.8 5.3E-20 1.8E-24 116.7 11.5 123 16-138 32-154 (220)
10 3rfs_A Internalin B, repeat mo 99.8 7.1E-20 2.4E-24 119.4 12.1 129 11-139 80-208 (272)
11 1ozn_A Reticulon 4 receptor; N 99.8 1E-19 3.4E-24 119.2 12.6 138 2-139 66-204 (285)
12 2o6q_A Variable lymphocyte rec 99.8 1.1E-19 3.7E-24 118.3 12.7 138 2-139 71-208 (270)
13 2v9t_B SLIT homolog 2 protein 99.8 9.1E-20 3.1E-24 115.6 11.4 125 1-125 41-165 (220)
14 2v70_A SLIT-2, SLIT homolog 2 99.8 2E-19 6.8E-24 114.0 12.1 122 17-138 33-155 (220)
15 4g8a_A TOLL-like receptor 4; l 99.8 4.7E-20 1.6E-24 131.6 10.0 134 2-135 62-196 (635)
16 2v70_A SLIT-2, SLIT homolog 2 99.8 1.6E-19 5.3E-24 114.5 10.9 127 1-127 41-168 (220)
17 4fcg_A Uncharacterized protein 99.8 1.5E-19 5E-24 120.8 10.8 134 2-138 114-279 (328)
18 3e6j_A Variable lymphocyte rec 99.8 3.8E-19 1.3E-23 113.3 12.1 122 16-138 40-161 (229)
19 2z62_A TOLL-like receptor 4, v 99.8 1.5E-19 5.3E-24 117.9 10.1 136 2-137 38-174 (276)
20 2o6s_A Variable lymphocyte rec 99.8 4.6E-19 1.6E-23 111.3 11.7 123 2-124 38-160 (208)
21 3vq2_A TLR4, TOLL-like recepto 99.8 1.1E-19 3.9E-24 129.5 10.0 138 1-138 41-179 (606)
22 3rfs_A Internalin B, repeat mo 99.8 6.5E-19 2.2E-23 114.8 11.7 128 1-128 94-221 (272)
23 2z66_A Variable lymphocyte rec 99.8 6.4E-19 2.2E-23 116.4 11.8 129 10-138 120-250 (306)
24 3m19_A Variable lymphocyte rec 99.8 6.4E-19 2.2E-23 113.6 11.5 127 1-127 68-194 (251)
25 1p9a_G Platelet glycoprotein I 99.8 7.9E-19 2.7E-23 115.4 11.4 135 2-137 41-196 (290)
26 4eco_A Uncharacterized protein 99.8 1.3E-19 4.3E-24 130.2 8.1 135 2-139 193-356 (636)
27 2id5_A Lingo-1, leucine rich r 99.8 3.6E-19 1.2E-23 123.9 10.1 136 2-137 42-177 (477)
28 3e6j_A Variable lymphocyte rec 99.8 1.4E-18 4.9E-23 110.7 11.6 127 1-128 49-175 (229)
29 1p9a_G Platelet glycoprotein I 99.8 1.2E-18 4.1E-23 114.6 11.3 122 2-125 87-208 (290)
30 3t6q_A CD180 antigen; protein- 99.8 4.2E-19 1.4E-23 126.6 9.8 138 1-138 42-179 (606)
31 2xot_A Amphoterin-induced prot 99.8 3.9E-19 1.3E-23 120.1 8.8 124 2-125 49-176 (361)
32 3v47_A TOLL-like receptor 5B a 99.8 1.1E-18 3.7E-23 120.7 11.2 128 2-129 285-412 (455)
33 2o6s_A Variable lymphocyte rec 99.8 3.6E-18 1.2E-22 107.2 12.4 125 15-139 27-151 (208)
34 4g8a_A TOLL-like receptor 4; l 99.8 1.3E-18 4.3E-23 124.2 11.2 124 16-139 52-176 (635)
35 1w8a_A SLIT protein; signaling 99.8 1.6E-18 5.3E-23 107.8 9.8 121 7-129 22-143 (192)
36 4ezg_A Putative uncharacterize 99.8 9.4E-18 3.2E-22 104.6 13.4 130 2-139 54-184 (197)
37 2z63_A TOLL-like receptor 4, v 99.8 9.5E-19 3.2E-23 123.8 9.9 137 2-138 38-175 (570)
38 2id5_A Lingo-1, leucine rich r 99.8 1.2E-18 4E-23 121.3 10.1 139 1-139 65-203 (477)
39 3vq2_A TLR4, TOLL-like recepto 99.8 1.4E-18 4.7E-23 123.9 10.1 134 2-136 409-544 (606)
40 2ell_A Acidic leucine-rich nuc 99.8 1.4E-18 4.8E-23 105.7 8.7 121 15-138 23-149 (168)
41 4eco_A Uncharacterized protein 99.8 8.2E-19 2.8E-23 126.0 8.4 137 1-139 90-333 (636)
42 2z80_A TOLL-like receptor 2, v 99.8 3.6E-19 1.2E-23 119.8 6.1 135 3-137 63-199 (353)
43 3v47_A TOLL-like receptor 5B a 99.8 7E-18 2.4E-22 116.6 11.8 125 15-139 274-398 (455)
44 2z66_A Variable lymphocyte rec 99.8 3E-18 1E-22 113.2 9.1 130 9-138 94-225 (306)
45 3zyj_A Leucine-rich repeat-con 99.8 1.3E-17 4.6E-22 115.1 12.6 136 2-139 74-234 (440)
46 3oja_B Anopheles plasmodium-re 99.8 1.5E-17 5E-22 118.8 13.0 97 4-100 87-183 (597)
47 2ell_A Acidic leucine-rich nuc 99.8 1.3E-17 4.3E-22 101.5 10.9 128 2-132 34-166 (168)
48 3zyi_A Leucine-rich repeat-con 99.8 1.3E-17 4.5E-22 115.5 12.2 137 1-139 84-245 (452)
49 3t6q_A CD180 antigen; protein- 99.8 9.8E-18 3.4E-22 119.6 11.7 137 2-138 386-526 (606)
50 4ecn_A Leucine-rich repeat pro 99.8 2.4E-18 8.1E-23 127.0 8.6 134 2-139 435-598 (876)
51 2je0_A Acidic leucine-rich nuc 99.8 3.2E-18 1.1E-22 102.2 7.7 124 14-139 15-143 (149)
52 3zyi_A Leucine-rich repeat-con 99.8 8.4E-18 2.9E-22 116.5 10.9 136 2-139 109-269 (452)
53 2z81_A CD282 antigen, TOLL-lik 99.8 8.7E-19 3E-23 123.6 5.9 135 2-136 36-172 (549)
54 2wfh_A SLIT homolog 2 protein 99.7 2.7E-17 9.1E-22 102.3 11.4 109 16-125 31-139 (193)
55 3o6n_A APL1; leucine-rich repe 99.7 3E-17 1E-21 111.7 12.6 30 109-138 245-274 (390)
56 3oja_B Anopheles plasmodium-re 99.7 4.9E-18 1.7E-22 121.2 9.1 123 5-127 64-186 (597)
57 2z62_A TOLL-like receptor 4, v 99.7 1.4E-17 4.7E-22 108.6 10.4 137 2-138 62-226 (276)
58 3zyj_A Leucine-rich repeat-con 99.7 1.6E-17 5.4E-22 114.8 11.1 136 2-139 98-258 (440)
59 3o6n_A APL1; leucine-rich repe 99.7 7.1E-18 2.4E-22 114.8 9.0 115 11-125 64-178 (390)
60 2o6r_A Variable lymphocyte rec 99.7 2.8E-17 9.7E-22 100.7 10.6 115 15-129 27-141 (177)
61 1ziw_A TOLL-like receptor 3; i 99.7 5.3E-18 1.8E-22 122.4 8.3 123 3-125 36-158 (680)
62 1wwl_A Monocyte differentiatio 99.7 1.2E-17 4.2E-22 110.7 9.4 136 2-138 105-255 (312)
63 1xku_A Decorin; proteoglycan, 99.7 3.3E-17 1.1E-21 109.3 11.4 131 4-138 133-265 (330)
64 4ecn_A Leucine-rich repeat pro 99.7 4E-18 1.4E-22 125.8 7.4 107 32-139 440-576 (876)
65 2z7x_B TOLL-like receptor 1, v 99.7 5.4E-17 1.8E-21 114.0 12.4 135 1-139 333-471 (520)
66 2xot_A Amphoterin-induced prot 99.7 3.6E-17 1.2E-21 110.5 11.0 122 16-138 39-165 (361)
67 2xwt_C Thyrotropin receptor; s 99.7 9.1E-18 3.1E-22 107.4 7.6 136 2-138 41-207 (239)
68 1w8a_A SLIT protein; signaling 99.7 2.6E-17 9E-22 102.2 9.3 119 18-139 10-129 (192)
69 2z63_A TOLL-like receptor 4, v 99.7 1.4E-17 4.8E-22 117.9 9.0 127 12-138 392-520 (570)
70 2je0_A Acidic leucine-rich nuc 99.7 2.3E-17 8E-22 98.4 8.5 118 2-121 27-149 (149)
71 3j0a_A TOLL-like receptor 5; m 99.7 1.7E-17 5.9E-22 122.4 9.5 134 1-134 33-170 (844)
72 1ziw_A TOLL-like receptor 3; i 99.7 4.1E-17 1.4E-21 117.8 10.9 130 8-139 19-148 (680)
73 2xwt_C Thyrotropin receptor; s 99.7 4.5E-17 1.5E-21 104.2 9.5 133 2-138 91-231 (239)
74 1a9n_A U2A', U2A'; complex (nu 99.7 5.9E-17 2E-21 99.3 9.1 124 10-139 13-143 (176)
75 1xku_A Decorin; proteoglycan, 99.7 3.8E-16 1.3E-20 104.1 13.1 121 2-125 62-184 (330)
76 3a79_B TLR6, VLRB.59, TOLL-lik 99.7 1.7E-16 5.7E-21 112.6 11.7 134 2-139 363-500 (562)
77 2z81_A CD282 antigen, TOLL-lik 99.7 6.3E-17 2.1E-21 114.2 9.3 129 8-138 20-150 (549)
78 2ft3_A Biglycan; proteoglycan, 99.7 8.4E-17 2.9E-21 107.4 9.4 131 2-133 133-285 (332)
79 2z80_A TOLL-like receptor 2, v 99.7 8.1E-17 2.8E-21 108.3 9.2 123 16-138 52-176 (353)
80 2ft3_A Biglycan; proteoglycan, 99.7 2.7E-16 9.1E-21 105.0 11.4 96 2-100 64-159 (332)
81 2wfh_A SLIT homolog 2 protein 99.7 2.4E-16 8.4E-21 98.0 10.1 118 18-139 12-129 (193)
82 2z7x_B TOLL-like receptor 1, v 99.7 2.4E-16 8.1E-21 110.7 10.6 119 2-126 10-129 (520)
83 4glp_A Monocyte differentiatio 99.7 1E-16 3.6E-21 106.1 7.9 134 1-135 100-247 (310)
84 4b8c_D Glucose-repressible alc 99.7 3.9E-17 1.3E-21 118.9 6.3 124 7-134 215-338 (727)
85 4ezg_A Putative uncharacterize 99.7 2E-16 6.8E-21 98.6 8.7 122 12-139 40-162 (197)
86 1h6t_A Internalin B; cell adhe 99.7 8.1E-16 2.8E-20 101.1 11.9 117 12-138 86-202 (291)
87 1wwl_A Monocyte differentiatio 99.7 5.2E-17 1.8E-21 107.7 5.7 130 2-133 131-273 (312)
88 3oja_A Leucine-rich immune mol 99.7 6E-17 2E-21 113.3 6.2 120 15-138 119-239 (487)
89 3o53_A Protein LRIM1, AGAP0063 99.7 6.1E-17 2.1E-21 107.6 5.8 119 16-138 120-239 (317)
90 4fmz_A Internalin; leucine ric 99.7 1E-15 3.6E-20 102.5 11.4 120 12-139 217-336 (347)
91 2o6r_A Variable lymphocyte rec 99.7 9.7E-16 3.3E-20 93.9 10.3 120 17-139 8-127 (177)
92 3oja_A Leucine-rich immune mol 99.7 2.9E-16 1E-20 109.8 8.6 133 1-137 129-263 (487)
93 3j0a_A TOLL-like receptor 5; m 99.7 4.9E-16 1.7E-20 114.8 10.1 128 9-136 66-198 (844)
94 3o53_A Protein LRIM1, AGAP0063 99.7 4.4E-16 1.5E-20 103.5 8.5 133 2-138 130-264 (317)
95 1h6t_A Internalin B; cell adhe 99.7 3.4E-15 1.2E-19 98.2 12.4 119 11-139 63-181 (291)
96 1h6u_A Internalin H; cell adhe 99.6 2.6E-15 8.8E-20 99.5 11.6 17 109-125 192-208 (308)
97 3g39_A Variable lymphocyte rec 99.6 9.6E-16 3.3E-20 93.5 8.9 106 17-125 10-115 (170)
98 1h6u_A Internalin H; cell adhe 99.6 3.5E-15 1.2E-19 98.8 12.0 117 12-138 81-197 (308)
99 2r9u_A Variable lymphocyte rec 99.6 8.5E-16 2.9E-20 94.1 8.1 105 18-125 14-118 (174)
100 3a79_B TLR6, VLRB.59, TOLL-lik 99.6 1.7E-15 5.9E-20 107.4 10.8 108 16-126 52-160 (562)
101 1ds9_A Outer arm dynein; leuci 99.6 4.6E-18 1.6E-22 106.0 -2.3 124 11-139 43-177 (198)
102 1dce_A Protein (RAB geranylger 99.6 2.1E-15 7E-20 107.2 10.9 108 17-129 442-550 (567)
103 4glp_A Monocyte differentiatio 99.6 6.4E-16 2.2E-20 102.3 7.7 119 13-132 142-270 (310)
104 1xeu_A Internalin C; cellular 99.6 9.7E-15 3.3E-19 94.7 12.5 118 11-139 58-175 (263)
105 2ast_B S-phase kinase-associat 99.6 1.6E-16 5.6E-21 106.0 3.3 31 108-138 218-249 (336)
106 1m9s_A Internalin B; cell inva 99.6 5.7E-15 2E-19 105.6 11.2 107 11-125 60-166 (605)
107 1o6v_A Internalin A; bacterial 99.6 1.1E-14 3.8E-19 101.2 12.2 117 12-138 261-377 (466)
108 4fmz_A Internalin; leucine ric 99.6 1E-14 3.4E-19 97.7 10.8 120 12-139 195-314 (347)
109 1a9n_A U2A', U2A'; complex (nu 99.6 3.3E-15 1.1E-19 91.5 7.8 119 2-125 29-153 (176)
110 1m9s_A Internalin B; cell inva 99.6 1.7E-14 5.8E-19 103.2 12.5 126 2-139 75-200 (605)
111 1xeu_A Internalin C; cellular 99.6 5.9E-15 2E-19 95.8 8.9 118 11-139 36-153 (263)
112 2ast_B S-phase kinase-associat 99.6 7.2E-16 2.4E-20 102.9 4.4 136 3-139 81-225 (336)
113 3goz_A Leucine-rich repeat-con 99.6 2.9E-15 1E-19 101.1 5.6 124 2-125 8-151 (362)
114 1o6v_A Internalin A; bacterial 99.6 6E-14 2E-18 97.5 12.1 117 12-138 239-355 (466)
115 4b8c_D Glucose-repressible alc 99.6 1E-14 3.5E-19 106.3 8.0 105 31-139 215-319 (727)
116 3g39_A Variable lymphocyte rec 99.5 4.4E-14 1.5E-18 86.1 8.9 95 8-104 24-118 (170)
117 1dce_A Protein (RAB geranylger 99.5 5.1E-14 1.7E-18 100.1 10.5 113 2-119 451-567 (567)
118 3goz_A Leucine-rich repeat-con 99.5 1E-14 3.6E-19 98.4 4.9 119 10-128 44-183 (362)
119 2ca6_A RAN GTPase-activating p 99.5 5.2E-15 1.8E-19 100.6 3.0 126 13-138 91-246 (386)
120 2r9u_A Variable lymphocyte rec 99.5 1.7E-13 5.8E-18 83.8 9.0 96 6-103 25-120 (174)
121 2ifg_A High affinity nerve gro 99.5 1.2E-13 4E-18 92.7 8.2 88 12-100 27-115 (347)
122 2ca6_A RAN GTPase-activating p 99.5 6.1E-15 2.1E-19 100.2 1.5 68 59-126 211-288 (386)
123 3bz5_A Internalin-J, INLJ; leu 99.5 4.1E-13 1.4E-17 93.3 9.1 104 11-125 37-140 (457)
124 3cvr_A Invasion plasmid antige 99.4 1.7E-13 5.8E-18 97.4 7.2 109 14-135 138-253 (571)
125 2ifg_A High affinity nerve gro 99.4 4.1E-13 1.4E-17 90.0 8.6 104 19-125 11-116 (347)
126 3bz5_A Internalin-J, INLJ; leu 99.4 1.2E-12 4E-17 91.1 10.7 107 2-122 52-158 (457)
127 3cvr_A Invasion plasmid antige 99.4 7E-13 2.4E-17 94.3 9.1 105 17-138 121-232 (571)
128 4ay9_X Follicle-stimulating ho 99.4 4.2E-13 1.4E-17 90.3 7.6 76 2-77 40-117 (350)
129 1z7x_W Ribonuclease inhibitor; 99.4 2.1E-14 7.1E-19 99.4 0.9 86 41-126 314-412 (461)
130 4ay9_X Follicle-stimulating ho 99.4 6.5E-13 2.2E-17 89.3 7.4 128 9-138 97-228 (350)
131 3sb4_A Hypothetical leucine ri 99.4 5.6E-12 1.9E-16 84.1 9.7 99 39-139 225-324 (329)
132 1ds9_A Outer arm dynein; leuci 99.4 5.8E-15 2E-19 92.0 -4.5 120 14-139 16-143 (198)
133 1jl5_A Outer protein YOPM; leu 99.4 5E-12 1.7E-16 87.8 9.6 107 11-130 148-254 (454)
134 1z7x_W Ribonuclease inhibitor; 99.3 2.4E-13 8.1E-18 94.1 2.1 74 65-138 314-400 (461)
135 1jl5_A Outer protein YOPM; leu 99.3 1.9E-13 6.6E-18 94.9 1.5 33 6-38 24-56 (454)
136 3g06_A SSPH2 (leucine-rich rep 99.3 7.1E-12 2.4E-16 90.0 8.1 83 41-132 222-304 (622)
137 3g06_A SSPH2 (leucine-rich rep 99.2 5.1E-11 1.7E-15 85.6 9.8 101 7-125 54-154 (622)
138 3sb4_A Hypothetical leucine ri 99.2 1.2E-10 4.3E-15 77.6 7.8 74 63-138 225-299 (329)
139 3un9_A NLR family member X1; l 99.1 4.8E-12 1.6E-16 85.9 -0.5 88 40-127 155-254 (372)
140 3un9_A NLR family member X1; l 99.1 3.2E-11 1.1E-15 81.8 2.8 112 16-127 101-226 (372)
141 3ogk_B Coronatine-insensitive 99.0 1.3E-10 4.5E-15 82.7 3.5 124 14-138 110-245 (592)
142 4fdw_A Leucine rich hypothetic 98.9 1.5E-08 5.2E-13 69.4 9.9 65 7-73 171-235 (401)
143 1io0_A Tropomodulin; LRR prote 98.9 1.8E-09 6.2E-14 66.5 4.2 115 11-125 31-164 (185)
144 2p1m_B Transport inhibitor res 98.8 1E-09 3.5E-14 78.1 2.3 109 14-122 103-221 (594)
145 3ogk_B Coronatine-insensitive 98.8 6E-09 2.1E-13 74.2 5.9 82 14-96 162-251 (592)
146 4fdw_A Leucine rich hypothetic 98.8 6.5E-08 2.2E-12 66.3 10.4 101 32-135 263-368 (401)
147 2p1m_B Transport inhibitor res 98.8 4.4E-09 1.5E-13 74.9 4.4 86 38-123 103-195 (594)
148 3rw6_A Nuclear RNA export fact 98.7 3.8E-09 1.3E-13 68.5 2.2 81 37-118 167-257 (267)
149 3rw6_A Nuclear RNA export fact 98.7 6.1E-09 2.1E-13 67.6 2.4 67 61-129 167-237 (267)
150 3e4g_A ATP synthase subunit S, 98.7 2.6E-08 8.9E-13 60.6 4.5 83 41-123 62-150 (176)
151 2ra8_A Uncharacterized protein 98.5 2.8E-07 9.5E-12 62.4 7.3 112 15-126 192-321 (362)
152 3e4g_A ATP synthase subunit S, 98.5 1.5E-07 5.1E-12 57.3 4.5 85 15-99 60-150 (176)
153 1io0_A Tropomodulin; LRR prote 98.5 3.8E-08 1.3E-12 60.5 1.8 97 31-127 27-138 (185)
154 2ra8_A Uncharacterized protein 98.5 6.3E-08 2.2E-12 65.5 2.4 114 11-127 167-294 (362)
155 4gt6_A Cell surface protein; l 98.4 2.1E-06 7E-11 58.6 9.7 123 9-138 258-380 (394)
156 4h09_A Hypothetical leucine ri 98.4 4.4E-06 1.5E-10 56.6 10.2 123 10-136 234-356 (379)
157 4h09_A Hypothetical leucine ri 98.3 1.6E-05 5.4E-10 53.8 11.2 126 10-139 211-336 (379)
158 4fs7_A Uncharacterized protein 98.2 7.7E-06 2.6E-10 55.8 8.5 100 34-138 291-390 (394)
159 4fs7_A Uncharacterized protein 98.1 3.7E-05 1.3E-09 52.4 10.5 122 11-139 248-369 (394)
160 4gt6_A Cell surface protein; l 97.9 6E-05 2.1E-09 51.4 8.3 110 9-124 281-390 (394)
161 1pgv_A TMD-1, tropomodulin TMD 97.5 0.00015 5.2E-09 44.9 4.5 113 13-125 38-170 (197)
162 1pgv_A TMD-1, tropomodulin TMD 97.3 0.00019 6.6E-09 44.4 3.0 92 31-122 32-136 (197)
163 3rfe_A Platelet glycoprotein I 97.2 0.00076 2.6E-08 38.9 5.2 36 41-76 32-67 (130)
164 3rfe_A Platelet glycoprotein I 97.1 0.0015 5E-08 37.7 5.4 57 43-101 11-68 (130)
165 2lz0_A Uncharacterized protein 86.3 2.6 9.1E-05 22.8 5.4 45 5-50 9-53 (100)
166 2lz0_A Uncharacterized protein 76.6 3.4 0.00012 22.3 3.3 47 27-74 7-53 (100)
167 1g1p_A Conotoxin EVIA; three d 20.7 50 0.0017 13.2 1.1 10 129-138 6-15 (33)
No 1
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.87 E-value=1.8e-21 Score=125.56 Aligned_cols=139 Identities=28% Similarity=0.198 Sum_probs=118.5
Q ss_pred CCCccccCCccccCCCCccEEEccCCcceeechhhhccccccceeEeeccccccCcCccccCCCCccEEEccCCcccccc
Q 040935 1 MNNIPRSIPLEIGDLSKLQVLDLSSNHIVGEIRVQLGKLFSLNKLILNMNQLYGGMPLKLDSLTKLQYLDLSANKLWSLI 80 (139)
Q Consensus 1 ~n~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~ 80 (139)
+|.+.+..+..+.++++|++|++.+|.+++..+..|..+++|+.|++++|.+....+..|+.+++|+++++++|.++...
T Consensus 44 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 123 (251)
T 3m19_A 44 STGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLP 123 (251)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred CCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcC
Confidence 35667777778889999999999999998777777888999999999999997777778888999999999999998887
Q ss_pred hHhhhccccccEEecCCCcccccCchhhhccCCCCeEEccCcccccccCccccCcCCCC
Q 040935 81 LENIDNLLKLCYLNLSNNQFIQKIPIELEKLIPLSELDLNYNFLDVEIPFQICNMKSLE 139 (139)
Q Consensus 81 ~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~p~~~~~~~~L~ 139 (139)
+..+..+++|+.|++.+|.+++..+..+..+++|++|++++|.+++..+..+..+++|+
T Consensus 124 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 182 (251)
T 3m19_A 124 SGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQ 182 (251)
T ss_dssp TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCC
T ss_pred hhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCC
Confidence 77788899999999999999776666788899999999999999866666787777764
No 2
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.86 E-value=3.7e-21 Score=127.70 Aligned_cols=134 Identities=26% Similarity=0.399 Sum_probs=83.3
Q ss_pred CCccc--cCCccccCCCCccEEEccC-CcceeechhhhccccccceeEeeccccccCcCccccCCCCccEEEccCCcccc
Q 040935 2 NNIPR--SIPLEIGDLSKLQVLDLSS-NHIVGEIRVQLGKLFSLNKLILNMNQLYGGMPLKLDSLTKLQYLDLSANKLWS 78 (139)
Q Consensus 2 n~~~~--~~~~~~~~l~~L~~l~l~~-~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~ 78 (139)
|.+.+ .+|+.+..++.|++|++++ |.+.+..|..+..+++|+.+++++|.+.+..|..++.+++|+++++++|.+.+
T Consensus 60 ~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 139 (313)
T 1ogq_A 60 LNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSG 139 (313)
T ss_dssp CCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEES
T ss_pred CCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCC
Confidence 34444 5566666666666666663 66655566666666666666666666655566666666666666666666665
Q ss_pred cchHhhhccccccEEecCCCcccccCchhhhccC-CCCeEEccCcccccccCccccCc
Q 040935 79 LILENIDNLLKLCYLNLSNNQFIQKIPIELEKLI-PLSELDLNYNFLDVEIPFQICNM 135 (139)
Q Consensus 79 ~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~-~L~~l~l~~n~l~~~~p~~~~~~ 135 (139)
..+..+..+++|++|++.+|.+++.+|..++.++ .|+.|++++|.+++.+|..++.+
T Consensus 140 ~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l 197 (313)
T 1ogq_A 140 TLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL 197 (313)
T ss_dssp CCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGC
T ss_pred cCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCC
Confidence 5555566666666666666666555666666665 66666666666655555555544
No 3
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.86 E-value=2.9e-21 Score=128.22 Aligned_cols=137 Identities=25% Similarity=0.373 Sum_probs=117.9
Q ss_pred CCccccCCccccCCCCccEEEccCCcceeechhhhccccccceeEeeccccccCcCccccCCCCccEEEccCCcccccch
Q 040935 2 NNIPRSIPLEIGDLSKLQVLDLSSNHIVGEIRVQLGKLFSLNKLILNMNQLYGGMPLKLDSLTKLQYLDLSANKLWSLIL 81 (139)
Q Consensus 2 n~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~ 81 (139)
|.+.+.+|+.+..+++|++|++.+|.+.+..|..+..+++|+.+++++|.+.+..|..++.+++|+++++++|.+.+..+
T Consensus 87 n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p 166 (313)
T 1ogq_A 87 NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIP 166 (313)
T ss_dssp TTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECC
T ss_pred CcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCC
Confidence 66777888889999999999999999988888889999999999999999977888888999999999999999987777
Q ss_pred Hhhhccc-cccEEecCCCcccccCchhhhccCCCCeEEccCcccccccCccccCcCCCC
Q 040935 82 ENIDNLL-KLCYLNLSNNQFIQKIPIELEKLIPLSELDLNYNFLDVEIPFQICNMKSLE 139 (139)
Q Consensus 82 ~~~~~~~-~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~p~~~~~~~~L~ 139 (139)
..+..++ .|+.+++.+|.+++..|..+..++ |+.|++++|.+++..|..+..+++|+
T Consensus 167 ~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~ 224 (313)
T 1ogq_A 167 DSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQ 224 (313)
T ss_dssp GGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCS
T ss_pred HHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCC
Confidence 7788877 899999999988878888887776 88888888888877777777777664
No 4
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.85 E-value=1e-20 Score=138.26 Aligned_cols=138 Identities=36% Similarity=0.467 Sum_probs=88.3
Q ss_pred CCccccCCccccCCCCccEEEccCCcceeechhhhccccccceeEeeccccccCcCcc----------------------
Q 040935 2 NNIPRSIPLEIGDLSKLQVLDLSSNHIVGEIRVQLGKLFSLNKLILNMNQLYGGMPLK---------------------- 59 (139)
Q Consensus 2 n~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~---------------------- 59 (139)
|.+.+.+|..+..+++|++|++.+|.+.+..|..+..+++|+.+++++|.+.+.+|..
T Consensus 500 N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~ 579 (768)
T 3rgz_A 500 NRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIK 579 (768)
T ss_dssp SCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEE
T ss_pred CccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccc
Confidence 4555556666666666666666666666666666666666666666666554333322
Q ss_pred ------------------------------------------------ccCCCCccEEEccCCcccccchHhhhcccccc
Q 040935 60 ------------------------------------------------LDSLTKLQYLDLSANKLWSLILENIDNLLKLC 91 (139)
Q Consensus 60 ------------------------------------------------~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~ 91 (139)
++.+..|+.+++++|.+++..|..++.++.|+
T Consensus 580 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~ 659 (768)
T 3rgz_A 580 NDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLF 659 (768)
T ss_dssp CCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCC
T ss_pred cccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCC
Confidence 22234566666666666666666666777777
Q ss_pred EEecCCCcccccCchhhhccCCCCeEEccCcccccccCccccCcCCCC
Q 040935 92 YLNLSNNQFIQKIPIELEKLIPLSELDLNYNFLDVEIPFQICNMKSLE 139 (139)
Q Consensus 92 ~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~p~~~~~~~~L~ 139 (139)
.|++.+|.+++.+|..++.+++|+.||+++|.++|.+|.+++++++|+
T Consensus 660 ~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~ 707 (768)
T 3rgz_A 660 ILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLT 707 (768)
T ss_dssp EEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCS
T ss_pred EEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCC
Confidence 777777777777777777777777777777777777777777666653
No 5
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.85 E-value=1.2e-20 Score=137.88 Aligned_cols=138 Identities=33% Similarity=0.409 Sum_probs=94.8
Q ss_pred CCccccCCccccCCCCccEEEccCCcceeechhhhccccccceeEeeccccccCcCccccCCCCccEEEccCCcccccch
Q 040935 2 NNIPRSIPLEIGDLSKLQVLDLSSNHIVGEIRVQLGKLFSLNKLILNMNQLYGGMPLKLDSLTKLQYLDLSANKLWSLIL 81 (139)
Q Consensus 2 n~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~ 81 (139)
|.+.+.+|..+..+++|+.|++.+|.+++..|..+..+++|+.+++++|.+.+..|..++.+++|+++++.+|.+.+..+
T Consensus 404 n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p 483 (768)
T 3rgz_A 404 NGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIP 483 (768)
T ss_dssp SEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCC
T ss_pred CccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCC
Confidence 44455666666777777777777777766666666667777777777777666666666666777777777777766666
Q ss_pred HhhhccccccEEecCCCcccccCchhhhccCCCCeEEccCcccccccCccccCcCCCC
Q 040935 82 ENIDNLLKLCYLNLSNNQFIQKIPIELEKLIPLSELDLNYNFLDVEIPFQICNMKSLE 139 (139)
Q Consensus 82 ~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~p~~~~~~~~L~ 139 (139)
..+..+++|+.+++.+|.+++.+|..++.+++|++|++++|.+++.+|..++.+++|+
T Consensus 484 ~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~ 541 (768)
T 3rgz_A 484 SGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLI 541 (768)
T ss_dssp GGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCC
T ss_pred HHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCC
Confidence 6666677777777777777666666677777777777777777767777666666653
No 6
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.84 E-value=6.3e-20 Score=119.45 Aligned_cols=124 Identities=30% Similarity=0.273 Sum_probs=65.6
Q ss_pred CCccccCCccccCCCCccEEEccCCcceeechhhhccccccceeEeeccccccCcCccccCCCCccEEEccCCcccccch
Q 040935 2 NNIPRSIPLEIGDLSKLQVLDLSSNHIVGEIRVQLGKLFSLNKLILNMNQLYGGMPLKLDSLTKLQYLDLSANKLWSLIL 81 (139)
Q Consensus 2 n~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~ 81 (139)
|.+....+.++..+++|++|++.+|.++...+..|..+++|+.+++++|.+....+..+..+++|+++++++|.+....+
T Consensus 47 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 126 (270)
T 2o6q_A 47 NKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPP 126 (270)
T ss_dssp SCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCT
T ss_pred CCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCH
Confidence 34444444456666666666666666654444444556666666666666544444445555555555555555555544
Q ss_pred HhhhccccccEEecCCCcccccCchhhhccCCCCeEEccCcccc
Q 040935 82 ENIDNLLKLCYLNLSNNQFIQKIPIELEKLIPLSELDLNYNFLD 125 (139)
Q Consensus 82 ~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~l~ 125 (139)
..+..+++|+.|++.+|.+++..+..+..+++|+.|++++|.++
T Consensus 127 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 170 (270)
T 2o6q_A 127 RVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLK 170 (270)
T ss_dssp TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred HHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCc
Confidence 44455555555555555554333333444445555555544444
No 7
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.84 E-value=4.1e-20 Score=121.09 Aligned_cols=40 Identities=25% Similarity=0.161 Sum_probs=15.8
Q ss_pred cccCCCCccEEEccCCcceeechhhhccccccceeEeecc
Q 040935 11 EIGDLSKLQVLDLSSNHIVGEIRVQLGKLFSLNKLILNMN 50 (139)
Q Consensus 11 ~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~~ 50 (139)
.+..+++|++|++.+|.+++..+..+..+++|+.+++++|
T Consensus 51 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 51 SFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred HcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence 3334444444444444433333333333334444444333
No 8
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.84 E-value=2.6e-20 Score=124.37 Aligned_cols=123 Identities=22% Similarity=0.236 Sum_probs=93.1
Q ss_pred CCCccEEEccCCcceeechhhhccccccceeEeeccccccCcCccccCCCCccEEEccCCcccccchHhhhccccccEEe
Q 040935 15 LSKLQVLDLSSNHIVGEIRVQLGKLFSLNKLILNMNQLYGGMPLKLDSLTKLQYLDLSANKLWSLILENIDNLLKLCYLN 94 (139)
Q Consensus 15 l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~ 94 (139)
+++|++|++.+|.++ ..|..+..+++|+.+++++|.+. ..|..++.+++|+++++++|.+.+..+..+..+++|+.|+
T Consensus 182 l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~-~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~ 259 (328)
T 4fcg_A 182 LVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLI 259 (328)
T ss_dssp STTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC-CCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEE
T ss_pred CCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC-cCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEE
Confidence 666777777777666 56666777777777777777774 4455677777788888887777776677777778888888
Q ss_pred cCCCcccccCchhhhccCCCCeEEccCcccccccCccccCcCCCC
Q 040935 95 LSNNQFIQKIPIELEKLIPLSELDLNYNFLDVEIPFQICNMKSLE 139 (139)
Q Consensus 95 l~~n~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~p~~~~~~~~L~ 139 (139)
+.+|.+.+.+|..++.+++|+.|++++|.+.+.+|+.++++++|+
T Consensus 260 L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~ 304 (328)
T 4fcg_A 260 LKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANC 304 (328)
T ss_dssp CTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTC
T ss_pred CCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCce
Confidence 888777777777788888888888888888778888888887764
No 9
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.84 E-value=5.3e-20 Score=116.66 Aligned_cols=123 Identities=21% Similarity=0.152 Sum_probs=82.0
Q ss_pred CCccEEEccCCcceeechhhhccccccceeEeeccccccCcCccccCCCCccEEEccCCcccccchHhhhccccccEEec
Q 040935 16 SKLQVLDLSSNHIVGEIRVQLGKLFSLNKLILNMNQLYGGMPLKLDSLTKLQYLDLSANKLWSLILENIDNLLKLCYLNL 95 (139)
Q Consensus 16 ~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l 95 (139)
..++.|++.+|.++...+..|..+++|+.|++++|.+....|..|..+++|+++++++|.++...+..+..+++|+.|++
T Consensus 32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L 111 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLL 111 (220)
T ss_dssp TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEEC
Confidence 45667777777776555556666777777777777776666666677777777777777776665555666677777777
Q ss_pred CCCcccccCchhhhccCCCCeEEccCcccccccCccccCcCCC
Q 040935 96 SNNQFIQKIPIELEKLIPLSELDLNYNFLDVEIPFQICNMKSL 138 (139)
Q Consensus 96 ~~n~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~p~~~~~~~~L 138 (139)
.+|.+++..+..+..+++|+.|++++|.+++..+..|..+++|
T Consensus 112 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 154 (220)
T 2v9t_B 112 NANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAI 154 (220)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTC
T ss_pred CCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCC
Confidence 7777766556666667777777777777764444456655554
No 10
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.83 E-value=7.1e-20 Score=119.35 Aligned_cols=129 Identities=32% Similarity=0.300 Sum_probs=88.2
Q ss_pred cccCCCCccEEEccCCcceeechhhhccccccceeEeeccccccCcCccccCCCCccEEEccCCcccccchHhhhccccc
Q 040935 11 EIGDLSKLQVLDLSSNHIVGEIRVQLGKLFSLNKLILNMNQLYGGMPLKLDSLTKLQYLDLSANKLWSLILENIDNLLKL 90 (139)
Q Consensus 11 ~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L 90 (139)
.+..+++|++|++.+|.+++..+..+..+++|+.+++++|.+....+..++.+++|+++++++|.++...+..+..+++|
T Consensus 80 ~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 159 (272)
T 3rfs_A 80 ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNL 159 (272)
T ss_dssp GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccC
Confidence 56667777777777777765555556667777777777777765555556677777777777777766666666677777
Q ss_pred cEEecCCCcccccCchhhhccCCCCeEEccCcccccccCccccCcCCCC
Q 040935 91 CYLNLSNNQFIQKIPIELEKLIPLSELDLNYNFLDVEIPFQICNMKSLE 139 (139)
Q Consensus 91 ~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~p~~~~~~~~L~ 139 (139)
+.|++.+|.+++..+..++.+++|+.|++++|.+++..|..++.+++|+
T Consensus 160 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 208 (272)
T 3rfs_A 160 TELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQ 208 (272)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCC
T ss_pred CEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCC
Confidence 7777777777655555566777777777777777755555566666553
No 11
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.83 E-value=1e-19 Score=119.22 Aligned_cols=138 Identities=26% Similarity=0.205 Sum_probs=117.9
Q ss_pred CCccccCCccccCCCCccEEEccCCc-ceeechhhhccccccceeEeeccccccCcCccccCCCCccEEEccCCcccccc
Q 040935 2 NNIPRSIPLEIGDLSKLQVLDLSSNH-IVGEIRVQLGKLFSLNKLILNMNQLYGGMPLKLDSLTKLQYLDLSANKLWSLI 80 (139)
Q Consensus 2 n~~~~~~~~~~~~l~~L~~l~l~~~~-~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~ 80 (139)
|.+.+..+..+..+++|++|++.+|. +....+..+..+++|+.+++++|.+....+..+..+++|+++++++|.+....
T Consensus 66 n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 145 (285)
T 1ozn_A 66 NVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALP 145 (285)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred CccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccC
Confidence 56667778888999999999999997 77666778888999999999999997777888888999999999999998877
Q ss_pred hHhhhccccccEEecCCCcccccCchhhhccCCCCeEEccCcccccccCccccCcCCCC
Q 040935 81 LENIDNLLKLCYLNLSNNQFIQKIPIELEKLIPLSELDLNYNFLDVEIPFQICNMKSLE 139 (139)
Q Consensus 81 ~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~p~~~~~~~~L~ 139 (139)
+..+..+++|+.|++.+|.+++..+..+..+++|+.|++++|.+++..|..+..+++|+
T Consensus 146 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 204 (285)
T 1ozn_A 146 DDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLM 204 (285)
T ss_dssp TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCC
T ss_pred HhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCccccc
Confidence 77788889999999999998776666688899999999999999877788888887764
No 12
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.83 E-value=1.1e-19 Score=118.33 Aligned_cols=138 Identities=30% Similarity=0.277 Sum_probs=116.4
Q ss_pred CCccccCCccccCCCCccEEEccCCcceeechhhhccccccceeEeeccccccCcCccccCCCCccEEEccCCcccccch
Q 040935 2 NNIPRSIPLEIGDLSKLQVLDLSSNHIVGEIRVQLGKLFSLNKLILNMNQLYGGMPLKLDSLTKLQYLDLSANKLWSLIL 81 (139)
Q Consensus 2 n~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~ 81 (139)
|.+....+..+..+++|++|++.+|.+....+..+..+++|+.+++++|.+....+..|+.+++|+++++++|.+....+
T Consensus 71 n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 150 (270)
T 2o6q_A 71 NKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPK 150 (270)
T ss_dssp SCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred CccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCH
Confidence 55665556667889999999999999987666778889999999999999977777888899999999999999988877
Q ss_pred HhhhccccccEEecCCCcccccCchhhhccCCCCeEEccCcccccccCccccCcCCCC
Q 040935 82 ENIDNLLKLCYLNLSNNQFIQKIPIELEKLIPLSELDLNYNFLDVEIPFQICNMKSLE 139 (139)
Q Consensus 82 ~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~p~~~~~~~~L~ 139 (139)
..+..+++|+.|++.+|.+++..+..+..+++|++|++++|.+++..+..+..+++|+
T Consensus 151 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 208 (270)
T 2o6q_A 151 GVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLK 208 (270)
T ss_dssp TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCC
T ss_pred hHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCC
Confidence 7788899999999999999776666788899999999999999855455577777664
No 13
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.83 E-value=9.1e-20 Score=115.58 Aligned_cols=125 Identities=27% Similarity=0.254 Sum_probs=113.7
Q ss_pred CCCccccCCccccCCCCccEEEccCCcceeechhhhccccccceeEeeccccccCcCccccCCCCccEEEccCCcccccc
Q 040935 1 MNNIPRSIPLEIGDLSKLQVLDLSSNHIVGEIRVQLGKLFSLNKLILNMNQLYGGMPLKLDSLTKLQYLDLSANKLWSLI 80 (139)
Q Consensus 1 ~n~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~ 80 (139)
+|.+....+..+..+++|+.|++.+|.++...+..|..+++|+.|++++|.+....+..|..+++|+++++++|.+....
T Consensus 41 ~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~ 120 (220)
T 2v9t_B 41 QNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLR 120 (220)
T ss_dssp SSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred CCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeC
Confidence 36677777778999999999999999999888999999999999999999997666677889999999999999999998
Q ss_pred hHhhhccccccEEecCCCcccccCchhhhccCCCCeEEccCcccc
Q 040935 81 LENIDNLLKLCYLNLSNNQFIQKIPIELEKLIPLSELDLNYNFLD 125 (139)
Q Consensus 81 ~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~l~ 125 (139)
+..+..+++|+.|++.+|.+++..+..+..+++|+.+++++|++.
T Consensus 121 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 121 VDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred HHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 888999999999999999998877777899999999999999874
No 14
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.82 E-value=2e-19 Score=114.01 Aligned_cols=122 Identities=19% Similarity=0.091 Sum_probs=76.3
Q ss_pred CccEEEccCCcceeech-hhhccccccceeEeeccccccCcCccccCCCCccEEEccCCcccccchHhhhccccccEEec
Q 040935 17 KLQVLDLSSNHIVGEIR-VQLGKLFSLNKLILNMNQLYGGMPLKLDSLTKLQYLDLSANKLWSLILENIDNLLKLCYLNL 95 (139)
Q Consensus 17 ~L~~l~l~~~~~~~~~~-~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l 95 (139)
.++.|++.+|.++...+ ..|..+++|+.+++++|.+....+..|..+++|+++++++|.+....+..+..+++|+.|++
T Consensus 33 ~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 112 (220)
T 2v70_A 33 YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLML 112 (220)
T ss_dssp TCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEEC
T ss_pred CCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEEC
Confidence 34566666666664422 23566666666666666665555556666666666666666666666666666666666666
Q ss_pred CCCcccccCchhhhccCCCCeEEccCcccccccCccccCcCCC
Q 040935 96 SNNQFIQKIPIELEKLIPLSELDLNYNFLDVEIPFQICNMKSL 138 (139)
Q Consensus 96 ~~n~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~p~~~~~~~~L 138 (139)
.+|.+++..+..+..+++|+.|++++|.+++..|..|..+++|
T Consensus 113 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 155 (220)
T 2v70_A 113 RSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSL 155 (220)
T ss_dssp TTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTC
T ss_pred CCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCC
Confidence 6666665555566666666666666666665556666666555
No 15
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.82 E-value=4.7e-20 Score=131.58 Aligned_cols=134 Identities=26% Similarity=0.177 Sum_probs=85.3
Q ss_pred CCccccCCccccCCCCccEEEccCCcceeechhhhccccccceeEeeccccccCcCccccCCCCccEEEccCCcccccch
Q 040935 2 NNIPRSIPLEIGDLSKLQVLDLSSNHIVGEIRVQLGKLFSLNKLILNMNQLYGGMPLKLDSLTKLQYLDLSANKLWSLIL 81 (139)
Q Consensus 2 n~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~ 81 (139)
|.+.+..+.+|.++++|++|++++|.++...++.|..+++|++|++++|.+....+..|+.+.+|+++++++|+++...+
T Consensus 62 N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~ 141 (635)
T 4g8a_A 62 NPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLEN 141 (635)
T ss_dssp SCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTT
T ss_pred CCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCCh
Confidence 55555555666666777777777766665555566666667777777666655555566666667777777666666555
Q ss_pred HhhhccccccEEecCCCccccc-CchhhhccCCCCeEEccCcccccccCccccCc
Q 040935 82 ENIDNLLKLCYLNLSNNQFIQK-IPIELEKLIPLSELDLNYNFLDVEIPFQICNM 135 (139)
Q Consensus 82 ~~~~~~~~L~~l~l~~n~~~~~-~~~~~~~~~~L~~l~l~~n~l~~~~p~~~~~~ 135 (139)
..++.+++|+.|++.+|.++.. .|..++.+++|++|++++|.+++..|..+..+
T Consensus 142 ~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L 196 (635)
T 4g8a_A 142 FPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVL 196 (635)
T ss_dssp CCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHH
T ss_pred hhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccch
Confidence 5566666777777776666442 35556666677777777776665555544433
No 16
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.82 E-value=1.6e-19 Score=114.51 Aligned_cols=127 Identities=21% Similarity=0.211 Sum_probs=114.1
Q ss_pred CCCccccCC-ccccCCCCccEEEccCCcceeechhhhccccccceeEeeccccccCcCccccCCCCccEEEccCCccccc
Q 040935 1 MNNIPRSIP-LEIGDLSKLQVLDLSSNHIVGEIRVQLGKLFSLNKLILNMNQLYGGMPLKLDSLTKLQYLDLSANKLWSL 79 (139)
Q Consensus 1 ~n~~~~~~~-~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~ 79 (139)
+|.+.+..+ ..+..+++|+.|++.+|.++...+..|..+++|+.|++++|.+....+..|+.+++|+++++++|.+...
T Consensus 41 ~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 120 (220)
T 2v70_A 41 NNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCV 120 (220)
T ss_dssp SSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCB
T ss_pred CCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeE
Confidence 356666654 4578999999999999999977777899999999999999999888788899999999999999999998
Q ss_pred chHhhhccccccEEecCCCcccccCchhhhccCCCCeEEccCcccccc
Q 040935 80 ILENIDNLLKLCYLNLSNNQFIQKIPIELEKLIPLSELDLNYNFLDVE 127 (139)
Q Consensus 80 ~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~l~~~ 127 (139)
.+..+..+++|+.|++.+|.+++..|..+..+++|+.+++++|++...
T Consensus 121 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 168 (220)
T 2v70_A 121 GNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCN 168 (220)
T ss_dssp CTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECS
T ss_pred CHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCC
Confidence 888899999999999999999888888899999999999999988643
No 17
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.82 E-value=1.5e-19 Score=120.79 Aligned_cols=134 Identities=21% Similarity=0.278 Sum_probs=71.4
Q ss_pred CCccccCCccccCCCCccEEEccCCcceeechhhhccccccceeEeeccccccCcCc-----------------------
Q 040935 2 NNIPRSIPLEIGDLSKLQVLDLSSNHIVGEIRVQLGKLFSLNKLILNMNQLYGGMPL----------------------- 58 (139)
Q Consensus 2 n~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~----------------------- 58 (139)
|.+. .+|+.+..+++|++|++++|.++ ..|..+..+++|+.+++++|...+..|.
T Consensus 114 n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~ 191 (328)
T 4fcg_A 114 AGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLE 191 (328)
T ss_dssp SCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEE
T ss_pred CCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECc
Confidence 3444 55666666666666666666665 5555566666666666666544444444
Q ss_pred ---------cccCCCCccEEEccCCcccccchHhhhccccccEEecCCCcccccCchhhhccCCCCeEEccCcccccccC
Q 040935 59 ---------KLDSLTKLQYLDLSANKLWSLILENIDNLLKLCYLNLSNNQFIQKIPIELEKLIPLSELDLNYNFLDVEIP 129 (139)
Q Consensus 59 ---------~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~p 129 (139)
.++.+++|+++++++|.+....+ .+..+++|+.|++.+|.+.+.+|..++.+++|+.|++++|.+.+.+|
T Consensus 192 ~n~l~~lp~~l~~l~~L~~L~L~~N~l~~l~~-~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p 270 (328)
T 4fcg_A 192 WTGIRSLPASIANLQNLKSLKIRNSPLSALGP-AIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLP 270 (328)
T ss_dssp EECCCCCCGGGGGCTTCCEEEEESSCCCCCCG-GGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCC
T ss_pred CCCcCcchHhhcCCCCCCEEEccCCCCCcCch-hhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcc
Confidence 34444444444444444443222 24444555555555555444455455555555555555555555555
Q ss_pred ccccCcCCC
Q 040935 130 FQICNMKSL 138 (139)
Q Consensus 130 ~~~~~~~~L 138 (139)
..++.+++|
T Consensus 271 ~~~~~l~~L 279 (328)
T 4fcg_A 271 LDIHRLTQL 279 (328)
T ss_dssp TTGGGCTTC
T ss_pred hhhhcCCCC
Confidence 555555444
No 18
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.82 E-value=3.8e-19 Score=113.33 Aligned_cols=122 Identities=31% Similarity=0.304 Sum_probs=83.2
Q ss_pred CCccEEEccCCcceeechhhhccccccceeEeeccccccCcCccccCCCCccEEEccCCcccccchHhhhccccccEEec
Q 040935 16 SKLQVLDLSSNHIVGEIRVQLGKLFSLNKLILNMNQLYGGMPLKLDSLTKLQYLDLSANKLWSLILENIDNLLKLCYLNL 95 (139)
Q Consensus 16 ~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l 95 (139)
+++++|++++|.+++..+..|..+++|+.|++++|.+....+..|..+++|+++++++|.++...+..+..+++|+.|++
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L 119 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFM 119 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEec
Confidence 56777777777777666666777777777777777775554555667777777777777777666666667777777777
Q ss_pred CCCcccccCchhhhccCCCCeEEccCcccccccCccccCcCCC
Q 040935 96 SNNQFIQKIPIELEKLIPLSELDLNYNFLDVEIPFQICNMKSL 138 (139)
Q Consensus 96 ~~n~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~p~~~~~~~~L 138 (139)
.+|.++ .+|..+..+++|++|++++|.+++..+..+..+++|
T Consensus 120 s~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 161 (229)
T 3e6j_A 120 CCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSL 161 (229)
T ss_dssp CSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTC
T ss_pred cCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCC
Confidence 777774 456666777777777777777764444456666555
No 19
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.81 E-value=1.5e-19 Score=117.86 Aligned_cols=136 Identities=26% Similarity=0.177 Sum_probs=100.3
Q ss_pred CCccccCCccccCCCCccEEEccCCcceeechhhhccccccceeEeeccccccCcCccccCCCCccEEEccCCcccccch
Q 040935 2 NNIPRSIPLEIGDLSKLQVLDLSSNHIVGEIRVQLGKLFSLNKLILNMNQLYGGMPLKLDSLTKLQYLDLSANKLWSLIL 81 (139)
Q Consensus 2 n~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~ 81 (139)
|.+.+..+..+.++++|++|++++|.+....+..+..+++|+.+++++|.+....+..+..+++|+++++.+|.+....+
T Consensus 38 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 117 (276)
T 2z62_A 38 NPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLEN 117 (276)
T ss_dssp CCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTT
T ss_pred CcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCc
Confidence 55555556677778888888888888776666677778888888888888766666777778888888888888777666
Q ss_pred HhhhccccccEEecCCCccccc-CchhhhccCCCCeEEccCcccccccCccccCcCC
Q 040935 82 ENIDNLLKLCYLNLSNNQFIQK-IPIELEKLIPLSELDLNYNFLDVEIPFQICNMKS 137 (139)
Q Consensus 82 ~~~~~~~~L~~l~l~~n~~~~~-~~~~~~~~~~L~~l~l~~n~l~~~~p~~~~~~~~ 137 (139)
..+..+++|+.|++.+|.+++. +|..++.+++|++|++++|.+++..+..+..+++
T Consensus 118 ~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 174 (276)
T 2z62_A 118 FPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQ 174 (276)
T ss_dssp CCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHT
T ss_pred hhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhh
Confidence 5677778888888888887653 4677788888888888888877555555554443
No 20
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.81 E-value=4.6e-19 Score=111.29 Aligned_cols=123 Identities=29% Similarity=0.206 Sum_probs=68.2
Q ss_pred CCccccCCccccCCCCccEEEccCCcceeechhhhccccccceeEeeccccccCcCccccCCCCccEEEccCCcccccch
Q 040935 2 NNIPRSIPLEIGDLSKLQVLDLSSNHIVGEIRVQLGKLFSLNKLILNMNQLYGGMPLKLDSLTKLQYLDLSANKLWSLIL 81 (139)
Q Consensus 2 n~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~ 81 (139)
|.+.+..+..+..+++|++|++.+|.++...+..|..+++|+.+++++|.+....+..+..+++|+++++++|.+....+
T Consensus 38 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 117 (208)
T 2o6s_A 38 NSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPD 117 (208)
T ss_dssp SCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred CccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCH
Confidence 34444444445556666666666666554444445555666666666666544444445555666666666666655555
Q ss_pred HhhhccccccEEecCCCcccccCchhhhccCCCCeEEccCccc
Q 040935 82 ENIDNLLKLCYLNLSNNQFIQKIPIELEKLIPLSELDLNYNFL 124 (139)
Q Consensus 82 ~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~l 124 (139)
..+..+++|+.+++.+|.+++..+..+..+++|+.+++++|.+
T Consensus 118 ~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 160 (208)
T 2o6s_A 118 GVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPW 160 (208)
T ss_dssp TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCB
T ss_pred hHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCe
Confidence 5455556666666666665544443455555666666655544
No 21
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.81 E-value=1.1e-19 Score=129.51 Aligned_cols=138 Identities=28% Similarity=0.285 Sum_probs=114.1
Q ss_pred CCCccccCCccccCCCCccEEEccCCcceeechhhhccccccceeEeeccccccCcCccccCCCCccEEEccCCcccccc
Q 040935 1 MNNIPRSIPLEIGDLSKLQVLDLSSNHIVGEIRVQLGKLFSLNKLILNMNQLYGGMPLKLDSLTKLQYLDLSANKLWSLI 80 (139)
Q Consensus 1 ~n~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~ 80 (139)
+|.+.+..+..+.++++|++|++++|.+++..|..|..+++|+.+++++|.+....|..|+.+++|+++++++|.+....
T Consensus 41 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~ 120 (606)
T 3vq2_A 41 FNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLE 120 (606)
T ss_dssp TSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSS
T ss_pred CCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCcccccc
Confidence 35667777778888999999999999888777778888899999999999887777888888999999999999888777
Q ss_pred hHhhhccccccEEecCCCcccc-cCchhhhccCCCCeEEccCcccccccCccccCcCCC
Q 040935 81 LENIDNLLKLCYLNLSNNQFIQ-KIPIELEKLIPLSELDLNYNFLDVEIPFQICNMKSL 138 (139)
Q Consensus 81 ~~~~~~~~~L~~l~l~~n~~~~-~~~~~~~~~~~L~~l~l~~n~l~~~~p~~~~~~~~L 138 (139)
+..++.+++|++|++.+|.+++ .+|..++.+++|++|++++|.+++..|..++.+++|
T Consensus 121 ~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 179 (606)
T 3vq2_A 121 SFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLREN 179 (606)
T ss_dssp SSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHC
T ss_pred ccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhcc
Confidence 6778888899999999998865 467888889999999999998887767666655543
No 22
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.80 E-value=6.5e-19 Score=114.82 Aligned_cols=128 Identities=30% Similarity=0.191 Sum_probs=112.9
Q ss_pred CCCccccCCccccCCCCccEEEccCCcceeechhhhccccccceeEeeccccccCcCccccCCCCccEEEccCCcccccc
Q 040935 1 MNNIPRSIPLEIGDLSKLQVLDLSSNHIVGEIRVQLGKLFSLNKLILNMNQLYGGMPLKLDSLTKLQYLDLSANKLWSLI 80 (139)
Q Consensus 1 ~n~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~ 80 (139)
+|.+.+..+..+..+++|++|++.+|.+++..+..+..+++|+.+++++|.+....+..++.+++|+++++++|.++...
T Consensus 94 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 173 (272)
T 3rfs_A 94 GNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLP 173 (272)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred CCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccC
Confidence 36677777777899999999999999999777777899999999999999997777777889999999999999999888
Q ss_pred hHhhhccccccEEecCCCcccccCchhhhccCCCCeEEccCccccccc
Q 040935 81 LENIDNLLKLCYLNLSNNQFIQKIPIELEKLIPLSELDLNYNFLDVEI 128 (139)
Q Consensus 81 ~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~ 128 (139)
+..+..+++|+.|++.+|.+++..+..+..+++|+.+++++|++.+..
T Consensus 174 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~ 221 (272)
T 3rfs_A 174 EGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTC 221 (272)
T ss_dssp TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCT
T ss_pred HHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccccC
Confidence 887889999999999999998877777899999999999998775443
No 23
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.80 E-value=6.4e-19 Score=116.40 Aligned_cols=129 Identities=26% Similarity=0.257 Sum_probs=104.4
Q ss_pred ccccCCCCccEEEccCCcceeechhhhccccccceeEeecccccc-CcCccccCCCCccEEEccCCcccccchHhhhccc
Q 040935 10 LEIGDLSKLQVLDLSSNHIVGEIRVQLGKLFSLNKLILNMNQLYG-GMPLKLDSLTKLQYLDLSANKLWSLILENIDNLL 88 (139)
Q Consensus 10 ~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~-~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~ 88 (139)
..+..+++|++|++.+|.+....+..+..+++|+.+++++|.+.. ..|..+..+++|+++++++|.+....+..+..++
T Consensus 120 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 199 (306)
T 2z66_A 120 SVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLS 199 (306)
T ss_dssp TTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCT
T ss_pred hhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCC
Confidence 467778888888888888877777777888888888888888855 4677788888888888888888887777788888
Q ss_pred cccEEecCCCcccccCchhhhccCCCCeEEccCcccccccCccccCcC-CC
Q 040935 89 KLCYLNLSNNQFIQKIPIELEKLIPLSELDLNYNFLDVEIPFQICNMK-SL 138 (139)
Q Consensus 89 ~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~p~~~~~~~-~L 138 (139)
+|+.|++.+|.+++..+..+..+++|+.|++++|.+++..|..+..++ +|
T Consensus 200 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L 250 (306)
T 2z66_A 200 SLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSL 250 (306)
T ss_dssp TCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTC
T ss_pred CCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccC
Confidence 888899988888776666778888889999999988877787777763 54
No 24
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.80 E-value=6.4e-19 Score=113.60 Aligned_cols=127 Identities=30% Similarity=0.275 Sum_probs=114.4
Q ss_pred CCCccccCCccccCCCCccEEEccCCcceeechhhhccccccceeEeeccccccCcCccccCCCCccEEEccCCcccccc
Q 040935 1 MNNIPRSIPLEIGDLSKLQVLDLSSNHIVGEIRVQLGKLFSLNKLILNMNQLYGGMPLKLDSLTKLQYLDLSANKLWSLI 80 (139)
Q Consensus 1 ~n~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~ 80 (139)
+|.+.+..+..+..+++|++|++++|.++...+..|..+++|+.|++++|.+....+..|..+++|+++++++|.+....
T Consensus 68 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 147 (251)
T 3m19_A 68 YNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIP 147 (251)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred CCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccC
Confidence 46777877888999999999999999999777778899999999999999997777777889999999999999999888
Q ss_pred hHhhhccccccEEecCCCcccccCchhhhccCCCCeEEccCcccccc
Q 040935 81 LENIDNLLKLCYLNLSNNQFIQKIPIELEKLIPLSELDLNYNFLDVE 127 (139)
Q Consensus 81 ~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~l~~~ 127 (139)
+..+..+++|+.|++.+|.+++..+..+..+++|+.+++++|++...
T Consensus 148 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 148 AGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred HHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 87899999999999999999877777889999999999999998754
No 25
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.80 E-value=7.9e-19 Score=115.44 Aligned_cols=135 Identities=24% Similarity=0.136 Sum_probs=67.9
Q ss_pred CCccccCCccccCCCCccEEEccCCcceee---------------------chhhhccccccceeEeeccccccCcCccc
Q 040935 2 NNIPRSIPLEIGDLSKLQVLDLSSNHIVGE---------------------IRVQLGKLFSLNKLILNMNQLYGGMPLKL 60 (139)
Q Consensus 2 n~~~~~~~~~~~~l~~L~~l~l~~~~~~~~---------------------~~~~~~~l~~L~~l~l~~~~~~~~~~~~~ 60 (139)
|.+.+..+..+..++.|++|++.+|.++.. .|..+..+++|+.+++++|.+....+..|
T Consensus 41 N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~ 120 (290)
T 1p9a_G 41 NLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGAL 120 (290)
T ss_dssp SCCSEEEGGGGTTCTTCCEEECTTSCCCEEECCSCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTT
T ss_pred CcCCccCHHHhhcCCCCCEEECCCCccCcccCCCCCCcCCEEECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHH
Confidence 445555555666666666666666655532 23333444444555555555443334444
Q ss_pred cCCCCccEEEccCCcccccchHhhhccccccEEecCCCcccccCchhhhccCCCCeEEccCcccccccCccccCcCC
Q 040935 61 DSLTKLQYLDLSANKLWSLILENIDNLLKLCYLNLSNNQFIQKIPIELEKLIPLSELDLNYNFLDVEIPFQICNMKS 137 (139)
Q Consensus 61 ~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~p~~~~~~~~ 137 (139)
..+++|+++++++|.+....+..+..+++|+.|++.+|.++...+..+..+++|+.|++++|.++ .+|..+..+.+
T Consensus 121 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~ 196 (290)
T 1p9a_G 121 RGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHL 196 (290)
T ss_dssp TTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCC
T ss_pred cCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhccccc
Confidence 55555555555555555444444444555555555555554333333444555555555555555 45554444433
No 26
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.80 E-value=1.3e-19 Score=130.24 Aligned_cols=135 Identities=21% Similarity=0.325 Sum_probs=118.5
Q ss_pred CCccccCCccccCCCCccEEEccCCcceee-----------------chhhhc--cccccceeEeeccccccCcCccccC
Q 040935 2 NNIPRSIPLEIGDLSKLQVLDLSSNHIVGE-----------------IRVQLG--KLFSLNKLILNMNQLYGGMPLKLDS 62 (139)
Q Consensus 2 n~~~~~~~~~~~~l~~L~~l~l~~~~~~~~-----------------~~~~~~--~l~~L~~l~l~~~~~~~~~~~~~~~ 62 (139)
|.+.+ +|+.+.++++|++|++++|.+++. .|..+. .+++|+.+++++|.+.+..|..++.
T Consensus 193 n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~ 271 (636)
T 4eco_A 193 NNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKA 271 (636)
T ss_dssp CEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTT
T ss_pred CCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhc
Confidence 45667 888999999999999999999864 888888 9999999999999998899999999
Q ss_pred CCCccEEEccCCc-ccc-cchHhhhcc------ccccEEecCCCcccccCch--hhhccCCCCeEEccCcccccccCccc
Q 040935 63 LTKLQYLDLSANK-LWS-LILENIDNL------LKLCYLNLSNNQFIQKIPI--ELEKLIPLSELDLNYNFLDVEIPFQI 132 (139)
Q Consensus 63 ~~~L~~l~l~~n~-~~~-~~~~~~~~~------~~L~~l~l~~n~~~~~~~~--~~~~~~~L~~l~l~~n~l~~~~p~~~ 132 (139)
+++|+++++++|. +++ ..|..++.+ ++|+.|++.+|.++ .+|. .++.+++|+.|++++|.++|.+| .+
T Consensus 272 l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~ 349 (636)
T 4eco_A 272 LPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AF 349 (636)
T ss_dssp CSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CC
T ss_pred CCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hh
Confidence 9999999999998 877 667777766 89999999999997 7777 89999999999999999998888 77
Q ss_pred cCcCCCC
Q 040935 133 CNMKSLE 139 (139)
Q Consensus 133 ~~~~~L~ 139 (139)
+.+++|+
T Consensus 350 ~~l~~L~ 356 (636)
T 4eco_A 350 GSEIKLA 356 (636)
T ss_dssp EEEEEES
T ss_pred CCCCCCC
Confidence 7776653
No 27
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.80 E-value=3.6e-19 Score=123.86 Aligned_cols=136 Identities=23% Similarity=0.210 Sum_probs=84.7
Q ss_pred CCccccCCccccCCCCccEEEccCCcceeechhhhccccccceeEeeccccccCcCccccCCCCccEEEccCCcccccch
Q 040935 2 NNIPRSIPLEIGDLSKLQVLDLSSNHIVGEIRVQLGKLFSLNKLILNMNQLYGGMPLKLDSLTKLQYLDLSANKLWSLIL 81 (139)
Q Consensus 2 n~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~ 81 (139)
|.+.+..+..+.++++|++|++.+|.++...|..|..+++|+.|++++|.+....+..|..+++|+++++++|.+....+
T Consensus 42 n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~ 121 (477)
T 2id5_A 42 NRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLD 121 (477)
T ss_dssp SCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECT
T ss_pred CccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCCh
Confidence 45555556667777777777777777766666667777777777777777655544556666777777777776666655
Q ss_pred HhhhccccccEEecCCCcccccCchhhhccCCCCeEEccCcccccccCccccCcCC
Q 040935 82 ENIDNLLKLCYLNLSNNQFIQKIPIELEKLIPLSELDLNYNFLDVEIPFQICNMKS 137 (139)
Q Consensus 82 ~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~p~~~~~~~~ 137 (139)
..+..+++|+.|++.+|.+++..+..+..+++|+.|++++|.+++..+..+..+++
T Consensus 122 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~ 177 (477)
T 2id5_A 122 YMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHG 177 (477)
T ss_dssp TTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTT
T ss_pred hHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCC
Confidence 55666666666666666665554555555555666666555555332233444433
No 28
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.79 E-value=1.4e-18 Score=110.67 Aligned_cols=127 Identities=29% Similarity=0.211 Sum_probs=111.6
Q ss_pred CCCccccCCccccCCCCccEEEccCCcceeechhhhccccccceeEeeccccccCcCccccCCCCccEEEccCCcccccc
Q 040935 1 MNNIPRSIPLEIGDLSKLQVLDLSSNHIVGEIRVQLGKLFSLNKLILNMNQLYGGMPLKLDSLTKLQYLDLSANKLWSLI 80 (139)
Q Consensus 1 ~n~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~ 80 (139)
+|.+.+..|..+..+++|+.|++.+|.+....+..|..+++|+.|++++|.+....+..|..+++|+++++++|.+...
T Consensus 49 ~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~l- 127 (229)
T 3e6j_A 49 DNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTEL- 127 (229)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCSC-
T ss_pred CCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccccc-
Confidence 4678888888999999999999999999866666789999999999999999777777789999999999999999854
Q ss_pred hHhhhccccccEEecCCCcccccCchhhhccCCCCeEEccCccccccc
Q 040935 81 LENIDNLLKLCYLNLSNNQFIQKIPIELEKLIPLSELDLNYNFLDVEI 128 (139)
Q Consensus 81 ~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~ 128 (139)
+..+..+++|+.|++.+|.+++..+..+..+++|+.+++++|++....
T Consensus 128 p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 175 (229)
T 3e6j_A 128 PRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCEC 175 (229)
T ss_dssp CTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTB
T ss_pred CcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCc
Confidence 566788999999999999998766667899999999999999887443
No 29
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.79 E-value=1.2e-18 Score=114.57 Aligned_cols=122 Identities=30% Similarity=0.205 Sum_probs=108.0
Q ss_pred CCccccCCccccCCCCccEEEccCCcceeechhhhccccccceeEeeccccccCcCccccCCCCccEEEccCCcccccch
Q 040935 2 NNIPRSIPLEIGDLSKLQVLDLSSNHIVGEIRVQLGKLFSLNKLILNMNQLYGGMPLKLDSLTKLQYLDLSANKLWSLIL 81 (139)
Q Consensus 2 n~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~ 81 (139)
|.+. .+|..+..+++|++|++++|.++...+..|..+++|+.|++++|.+....+..|..+++|+++++++|+++...+
T Consensus 87 N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~ 165 (290)
T 1p9a_G 87 NQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPA 165 (290)
T ss_dssp SCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCT
T ss_pred CcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCH
Confidence 3443 467778899999999999999997777889999999999999999987777788899999999999999998888
Q ss_pred HhhhccccccEEecCCCcccccCchhhhccCCCCeEEccCcccc
Q 040935 82 ENIDNLLKLCYLNLSNNQFIQKIPIELEKLIPLSELDLNYNFLD 125 (139)
Q Consensus 82 ~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~l~ 125 (139)
..+..+++|+.|++.+|.++ .+|..+.....|+.+++++|++.
T Consensus 166 ~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 166 GLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp TTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred HHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCcc
Confidence 88889999999999999996 67778888889999999999875
No 30
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.79 E-value=4.2e-19 Score=126.59 Aligned_cols=138 Identities=19% Similarity=0.107 Sum_probs=110.9
Q ss_pred CCCccccCCccccCCCCccEEEccCCcceeechhhhccccccceeEeeccccccCcCccccCCCCccEEEccCCcccccc
Q 040935 1 MNNIPRSIPLEIGDLSKLQVLDLSSNHIVGEIRVQLGKLFSLNKLILNMNQLYGGMPLKLDSLTKLQYLDLSANKLWSLI 80 (139)
Q Consensus 1 ~n~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~ 80 (139)
+|.+.+..|.++.++++|++|++++|.+....|..|..+++|+.+++++|.+....|..++.+++|+++++++|.+....
T Consensus 42 ~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~ 121 (606)
T 3t6q_A 42 FNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSID 121 (606)
T ss_dssp TCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGG
T ss_pred CCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCC
Confidence 36677777888888999999999998888777888888889999999988887777888888888999999888888776
Q ss_pred hHhhhccccccEEecCCCcccccCchhhhccCCCCeEEccCcccccccCccccCcCCC
Q 040935 81 LENIDNLLKLCYLNLSNNQFIQKIPIELEKLIPLSELDLNYNFLDVEIPFQICNMKSL 138 (139)
Q Consensus 81 ~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~p~~~~~~~~L 138 (139)
+..+..+++|++|++.+|.+++.....+..+++|++|++++|.+++..|..++.+++|
T Consensus 122 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 179 (606)
T 3t6q_A 122 FIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQA 179 (606)
T ss_dssp GSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTC
T ss_pred cchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhccc
Confidence 6777888888888888888866433344558888888888888886667677777665
No 31
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.79 E-value=3.9e-19 Score=120.10 Aligned_cols=124 Identities=27% Similarity=0.180 Sum_probs=91.4
Q ss_pred CCccccCCcccc-CCCCccEEEccCCcceeechhhhccccccceeEeeccccccCcCccccCCCCccEEEccCCcccccc
Q 040935 2 NNIPRSIPLEIG-DLSKLQVLDLSSNHIVGEIRVQLGKLFSLNKLILNMNQLYGGMPLKLDSLTKLQYLDLSANKLWSLI 80 (139)
Q Consensus 2 n~~~~~~~~~~~-~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~ 80 (139)
|.+.+..+..+. ++++|+.|++.+|.++...+..|..+++|+.|++++|.+....+..|..+++|++|++++|.+....
T Consensus 49 N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~ 128 (361)
T 2xot_A 49 NNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVD 128 (361)
T ss_dssp SCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEEC
T ss_pred CCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEEC
Confidence 556666666666 7788888888888887666667777888888888888876666667777888888888888887777
Q ss_pred hHhhhccccccEEecCCCcccccCchhh---hccCCCCeEEccCcccc
Q 040935 81 LENIDNLLKLCYLNLSNNQFIQKIPIEL---EKLIPLSELDLNYNFLD 125 (139)
Q Consensus 81 ~~~~~~~~~L~~l~l~~n~~~~~~~~~~---~~~~~L~~l~l~~n~l~ 125 (139)
+..+..+++|+.|++.+|.+++..+..+ ..+++|+.|++++|.++
T Consensus 129 ~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~ 176 (361)
T 2xot_A 129 RNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLK 176 (361)
T ss_dssp TTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCC
T ss_pred HHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCC
Confidence 7777778888888888888765433334 45778888888888877
No 32
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.79 E-value=1.1e-18 Score=120.72 Aligned_cols=128 Identities=27% Similarity=0.199 Sum_probs=89.1
Q ss_pred CCccccCCccccCCCCccEEEccCCcceeechhhhccccccceeEeeccccccCcCccccCCCCccEEEccCCcccccch
Q 040935 2 NNIPRSIPLEIGDLSKLQVLDLSSNHIVGEIRVQLGKLFSLNKLILNMNQLYGGMPLKLDSLTKLQYLDLSANKLWSLIL 81 (139)
Q Consensus 2 n~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~ 81 (139)
|.+.+..|..+..+++|+.|++.+|.+.+..+..|..+++|+.+++++|.+....+..++.+++|+++++++|.+....+
T Consensus 285 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 364 (455)
T 3v47_A 285 SKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGD 364 (455)
T ss_dssp SCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECT
T ss_pred ccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccCh
Confidence 44555566667777777777777777776666667777777777777777765656667777777777777777766666
Q ss_pred HhhhccccccEEecCCCcccccCchhhhccCCCCeEEccCcccccccC
Q 040935 82 ENIDNLLKLCYLNLSNNQFIQKIPIELEKLIPLSELDLNYNFLDVEIP 129 (139)
Q Consensus 82 ~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~p 129 (139)
..+..+++|+.|++.+|.+++..+..+..+++|+.+++++|++++..|
T Consensus 365 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 365 QSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred hhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 667777777777777777765555556677777777777777765555
No 33
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.79 E-value=3.6e-18 Score=107.23 Aligned_cols=125 Identities=30% Similarity=0.259 Sum_probs=109.1
Q ss_pred CCCccEEEccCCcceeechhhhccccccceeEeeccccccCcCccccCCCCccEEEccCCcccccchHhhhccccccEEe
Q 040935 15 LSKLQVLDLSSNHIVGEIRVQLGKLFSLNKLILNMNQLYGGMPLKLDSLTKLQYLDLSANKLWSLILENIDNLLKLCYLN 94 (139)
Q Consensus 15 l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~ 94 (139)
.+.+++|++.+|.++...+..+..+++|+.+++++|.+....+..|..+++|+++++++|.++...+..+..+++|+.|+
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 106 (208)
T 2o6s_A 27 PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELA 106 (208)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEE
Confidence 45899999999999976666788999999999999999766667788999999999999999988777788999999999
Q ss_pred cCCCcccccCchhhhccCCCCeEEccCcccccccCccccCcCCCC
Q 040935 95 LSNNQFIQKIPIELEKLIPLSELDLNYNFLDVEIPFQICNMKSLE 139 (139)
Q Consensus 95 l~~n~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~p~~~~~~~~L~ 139 (139)
+.+|.+++..+..+..+++|++|++++|.+++..+..+..+++|+
T Consensus 107 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~ 151 (208)
T 2o6s_A 107 LNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQ 151 (208)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCC
T ss_pred cCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCcc
Confidence 999999876666788999999999999999955555677787764
No 34
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.78 E-value=1.3e-18 Score=124.21 Aligned_cols=124 Identities=23% Similarity=0.190 Sum_probs=111.5
Q ss_pred CCccEEEccCCcceeechhhhccccccceeEeeccccccCcCccccCCCCccEEEccCCcccccchHhhhccccccEEec
Q 040935 16 SKLQVLDLSSNHIVGEIRVQLGKLFSLNKLILNMNQLYGGMPLKLDSLTKLQYLDLSANKLWSLILENIDNLLKLCYLNL 95 (139)
Q Consensus 16 ~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l 95 (139)
+.+++|++++|.++...+..|..+++|+.|++++|.+....+.+|+.+++|++|++++|+++...+..|.++++|++|++
T Consensus 52 ~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~L 131 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 131 (635)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEEC
T ss_pred cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEEC
Confidence 47899999999999777789999999999999999998777889999999999999999999988888999999999999
Q ss_pred CCCcccccCchhhhccCCCCeEEccCccccc-ccCccccCcCCCC
Q 040935 96 SNNQFIQKIPIELEKLIPLSELDLNYNFLDV-EIPFQICNMKSLE 139 (139)
Q Consensus 96 ~~n~~~~~~~~~~~~~~~L~~l~l~~n~l~~-~~p~~~~~~~~L~ 139 (139)
.+|.+++..+..++.+++|++|++++|.+.+ .+|..++.+++|+
T Consensus 132 s~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~ 176 (635)
T 4g8a_A 132 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLE 176 (635)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCC
T ss_pred CCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhh
Confidence 9999977666678999999999999999874 4677788887764
No 35
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.78 E-value=1.6e-18 Score=107.77 Aligned_cols=121 Identities=30% Similarity=0.295 Sum_probs=103.9
Q ss_pred cCCccccCCCCccEEEccCCcceeechh-hhccccccceeEeeccccccCcCccccCCCCccEEEccCCcccccchHhhh
Q 040935 7 SIPLEIGDLSKLQVLDLSSNHIVGEIRV-QLGKLFSLNKLILNMNQLYGGMPLKLDSLTKLQYLDLSANKLWSLILENID 85 (139)
Q Consensus 7 ~~~~~~~~l~~L~~l~l~~~~~~~~~~~-~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~ 85 (139)
.+|..+.. .++.|++.+|.+....+. .+..+++|+.|++++|.+++..|..|+.+++|+++++++|.+....+..+.
T Consensus 22 ~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 99 (192)
T 1w8a_A 22 EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFL 99 (192)
T ss_dssp SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSST
T ss_pred cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhc
Confidence 34554433 899999999999855543 488999999999999999888889999999999999999999988888888
Q ss_pred ccccccEEecCCCcccccCchhhhccCCCCeEEccCcccccccC
Q 040935 86 NLLKLCYLNLSNNQFIQKIPIELEKLIPLSELDLNYNFLDVEIP 129 (139)
Q Consensus 86 ~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~p 129 (139)
.+++|+.|++.+|.+++..+..+..+++|+.+++++|.+.+..+
T Consensus 100 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 100 GLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp TCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred CCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence 99999999999999988888889999999999999998875443
No 36
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.78 E-value=9.4e-18 Score=104.57 Aligned_cols=130 Identities=22% Similarity=0.287 Sum_probs=108.3
Q ss_pred CCccccCCccccCCCCccEEEccCCcceeechhhhccccccceeEeeccccccCcCccccCCCCccEEEccCCcccccch
Q 040935 2 NNIPRSIPLEIGDLSKLQVLDLSSNHIVGEIRVQLGKLFSLNKLILNMNQLYGGMPLKLDSLTKLQYLDLSANKLWSLIL 81 (139)
Q Consensus 2 n~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~ 81 (139)
|.+. .+| .+..+++|++|++.+|.+. .. ..+..+++|+.+++++|.+....+..++.+++|+++++++|.+....+
T Consensus 54 n~i~-~l~-~l~~l~~L~~L~l~~n~~~-~~-~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~ 129 (197)
T 4ezg_A 54 INVT-DLT-GIEYAHNIKDLTINNIHAT-NY-NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSIL 129 (197)
T ss_dssp SCCS-CCT-TGGGCTTCSEEEEESCCCS-CC-GGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGH
T ss_pred CCcc-ChH-HHhcCCCCCEEEccCCCCC-cc-hhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhH
Confidence 3444 334 5788999999999999775 33 378889999999999999977778889999999999999999988778
Q ss_pred HhhhccccccEEecCCCc-ccccCchhhhccCCCCeEEccCcccccccCccccCcCCCC
Q 040935 82 ENIDNLLKLCYLNLSNNQ-FIQKIPIELEKLIPLSELDLNYNFLDVEIPFQICNMKSLE 139 (139)
Q Consensus 82 ~~~~~~~~L~~l~l~~n~-~~~~~~~~~~~~~~L~~l~l~~n~l~~~~p~~~~~~~~L~ 139 (139)
..+..+++|+.|++.+|. + ..++ .+..+++|+.|++++|.++ .++ .+..+++|+
T Consensus 130 ~~l~~l~~L~~L~L~~n~~i-~~~~-~l~~l~~L~~L~l~~n~i~-~~~-~l~~l~~L~ 184 (197)
T 4ezg_A 130 TKINTLPKVNSIDLSYNGAI-TDIM-PLKTLPELKSLNIQFDGVH-DYR-GIEDFPKLN 184 (197)
T ss_dssp HHHTTCSSCCEEECCSCTBC-CCCG-GGGGCSSCCEEECTTBCCC-CCT-TGGGCSSCC
T ss_pred HHHhhCCCCCEEEccCCCCc-cccH-hhcCCCCCCEEECCCCCCc-ChH-HhccCCCCC
Confidence 888999999999999998 6 4455 6889999999999999998 455 677777764
No 37
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.78 E-value=9.5e-19 Score=123.84 Aligned_cols=137 Identities=26% Similarity=0.198 Sum_probs=103.1
Q ss_pred CCccccCCccccCCCCccEEEccCCcceeechhhhccccccceeEeeccccccCcCccccCCCCccEEEccCCcccccch
Q 040935 2 NNIPRSIPLEIGDLSKLQVLDLSSNHIVGEIRVQLGKLFSLNKLILNMNQLYGGMPLKLDSLTKLQYLDLSANKLWSLIL 81 (139)
Q Consensus 2 n~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~ 81 (139)
|.+.+..+.++.++++|++|++++|.+.+..+..|..+++|+.+++++|.+....+..|+.+.+|+++++.+|.+....+
T Consensus 38 n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~ 117 (570)
T 2z63_A 38 NPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLEN 117 (570)
T ss_dssp CCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTT
T ss_pred CccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccccccCCC
Confidence 55666666677888888888888888776666677788888888888888766666777888888888888888776655
Q ss_pred HhhhccccccEEecCCCcccc-cCchhhhccCCCCeEEccCcccccccCccccCcCCC
Q 040935 82 ENIDNLLKLCYLNLSNNQFIQ-KIPIELEKLIPLSELDLNYNFLDVEIPFQICNMKSL 138 (139)
Q Consensus 82 ~~~~~~~~L~~l~l~~n~~~~-~~~~~~~~~~~L~~l~l~~n~l~~~~p~~~~~~~~L 138 (139)
..++.+++|++|++.+|.+++ .+|..++.+++|++|++++|.+++..|..++.+++|
T Consensus 118 ~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 175 (570)
T 2z63_A 118 FPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 175 (570)
T ss_dssp CSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTC
T ss_pred ccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhcc
Confidence 557777888888888887765 357778888888888888888876656666655544
No 38
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.78 E-value=1.2e-18 Score=121.32 Aligned_cols=139 Identities=20% Similarity=0.151 Sum_probs=116.8
Q ss_pred CCCccccCCccccCCCCccEEEccCCcceeechhhhccccccceeEeeccccccCcCccccCCCCccEEEccCCcccccc
Q 040935 1 MNNIPRSIPLEIGDLSKLQVLDLSSNHIVGEIRVQLGKLFSLNKLILNMNQLYGGMPLKLDSLTKLQYLDLSANKLWSLI 80 (139)
Q Consensus 1 ~n~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~ 80 (139)
+|.+.+..|.++.++++|++|++.+|.+....+..|..+++|+.|++++|.+....+..+..+++|+++++.+|.+....
T Consensus 65 ~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 144 (477)
T 2id5_A 65 ENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYIS 144 (477)
T ss_dssp TSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEEC
T ss_pred CCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeC
Confidence 36677777888999999999999999988666666788999999999999997777888888999999999999998887
Q ss_pred hHhhhccccccEEecCCCcccccCchhhhccCCCCeEEccCcccccccCccccCcCCCC
Q 040935 81 LENIDNLLKLCYLNLSNNQFIQKIPIELEKLIPLSELDLNYNFLDVEIPFQICNMKSLE 139 (139)
Q Consensus 81 ~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~p~~~~~~~~L~ 139 (139)
+..+..+++|+.|++.+|.+++..+..+..+++|+.|++++|.+.+..+..|..+++|+
T Consensus 145 ~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~ 203 (477)
T 2id5_A 145 HRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLK 203 (477)
T ss_dssp TTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCC
T ss_pred hhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccc
Confidence 87888889999999999988776666788888999999999988866666777776653
No 39
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.78 E-value=1.4e-18 Score=123.93 Aligned_cols=134 Identities=25% Similarity=0.254 Sum_probs=94.1
Q ss_pred CCccccCC-ccccCCCCccEEEccCCcceeechhhhccccccceeEeecccccc-CcCccccCCCCccEEEccCCccccc
Q 040935 2 NNIPRSIP-LEIGDLSKLQVLDLSSNHIVGEIRVQLGKLFSLNKLILNMNQLYG-GMPLKLDSLTKLQYLDLSANKLWSL 79 (139)
Q Consensus 2 n~~~~~~~-~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~-~~~~~~~~~~~L~~l~l~~n~~~~~ 79 (139)
|.+.+..+ ..+..+++|+.|++.+|.+.+..|..+..+++|+.+++++|.+.+ ..|..++.+++|+++++++|.+...
T Consensus 409 n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 488 (606)
T 3vq2_A 409 STLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQI 488 (606)
T ss_dssp SEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEE
T ss_pred CccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCcc
Confidence 33444444 466667777777777777766666667777777777777777755 3566677777777777777777776
Q ss_pred chHhhhccccccEEecCCCcccccCchhhhccCCCCeEEccCcccccccCccccCcC
Q 040935 80 ILENIDNLLKLCYLNLSNNQFIQKIPIELEKLIPLSELDLNYNFLDVEIPFQICNMK 136 (139)
Q Consensus 80 ~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~p~~~~~~~ 136 (139)
.+..+..+++|+.|++.+|.+++..|..++.+++|+.|++++|.++ .+|..+..++
T Consensus 489 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~ 544 (606)
T 3vq2_A 489 SWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFP 544 (606)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSC
T ss_pred ChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhc
Confidence 6666777777777777777776666667777777777777777776 6666666554
No 40
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.77 E-value=1.4e-18 Score=105.72 Aligned_cols=121 Identities=26% Similarity=0.205 Sum_probs=76.0
Q ss_pred CCCccEEEccCCcce-eechhhhccccccceeEeeccccccCcCccccCCCCccEEEccCCcccccchHhhhccccccEE
Q 040935 15 LSKLQVLDLSSNHIV-GEIRVQLGKLFSLNKLILNMNQLYGGMPLKLDSLTKLQYLDLSANKLWSLILENIDNLLKLCYL 93 (139)
Q Consensus 15 l~~L~~l~l~~~~~~-~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l 93 (139)
.+.++.|++.+|.++ +..|..+..+++|+.+++++|.+... ..+..+++|+++++++|.+....+..+..+++|+.|
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence 356667777777665 34555566666777777777766444 555666677777777777666555555566777777
Q ss_pred ecCCCcccccCc-hhhhccCCCCeEEccCcccccccCc----cccCcCCC
Q 040935 94 NLSNNQFIQKIP-IELEKLIPLSELDLNYNFLDVEIPF----QICNMKSL 138 (139)
Q Consensus 94 ~l~~n~~~~~~~-~~~~~~~~L~~l~l~~n~l~~~~p~----~~~~~~~L 138 (139)
++.+|.+++... ..+..+++|+.|++++|.++ .+|. .+..+++|
T Consensus 101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~-~~~~~~~~~~~~l~~L 149 (168)
T 2ell_A 101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCEVT-NLNDYRESVFKLLPQL 149 (168)
T ss_dssp ECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGG-TSTTHHHHHHTTCSSC
T ss_pred eccCCccCcchhHHHHhcCCCCCEEEeeCCcCc-chHHHHHHHHHhCccC
Confidence 777776644321 45666667777777777766 3343 55556555
No 41
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.77 E-value=8.2e-19 Score=126.04 Aligned_cols=137 Identities=19% Similarity=0.274 Sum_probs=121.9
Q ss_pred CCCccccCCccccCCCCccEEEccCC------------------------------------------------------
Q 040935 1 MNNIPRSIPLEIGDLSKLQVLDLSSN------------------------------------------------------ 26 (139)
Q Consensus 1 ~n~~~~~~~~~~~~l~~L~~l~l~~~------------------------------------------------------ 26 (139)
++.+.+.+|+++..++.|++|++++|
T Consensus 90 ~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~ 169 (636)
T 4eco_A 90 GFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSD 169 (636)
T ss_dssp TSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHC
T ss_pred CcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcC
Confidence 36778889999999999999999887
Q ss_pred ------------------------cceeechhhhccccccceeEeeccccccC-----------------cCcccc--CC
Q 040935 27 ------------------------HIVGEIRVQLGKLFSLNKLILNMNQLYGG-----------------MPLKLD--SL 63 (139)
Q Consensus 27 ------------------------~~~~~~~~~~~~l~~L~~l~l~~~~~~~~-----------------~~~~~~--~~ 63 (139)
.+++ .|..+..+++|+.|++++|.+++. +|..++ .+
T Consensus 170 l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l 248 (636)
T 4eco_A 170 PQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNL 248 (636)
T ss_dssp TTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGC
T ss_pred ccccccccccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhccc
Confidence 3444 777899999999999999999774 888888 99
Q ss_pred CCccEEEccCCcccccchHhhhccccccEEecCCCc-ccc-cCchhhhcc------CCCCeEEccCcccccccCc--ccc
Q 040935 64 TKLQYLDLSANKLWSLILENIDNLLKLCYLNLSNNQ-FIQ-KIPIELEKL------IPLSELDLNYNFLDVEIPF--QIC 133 (139)
Q Consensus 64 ~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~-~~~-~~~~~~~~~------~~L~~l~l~~n~l~~~~p~--~~~ 133 (139)
++|+++++++|.+.+..|..+..+++|+.|++.+|. +++ .+|..++.+ ++|++|++++|.++ .+|. .++
T Consensus 249 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~ 327 (636)
T 4eco_A 249 KDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQ 327 (636)
T ss_dssp TTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHT
T ss_pred CCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhc
Confidence 999999999999988888889999999999999998 887 788888876 89999999999999 8998 899
Q ss_pred CcCCCC
Q 040935 134 NMKSLE 139 (139)
Q Consensus 134 ~~~~L~ 139 (139)
.+++|+
T Consensus 328 ~l~~L~ 333 (636)
T 4eco_A 328 KMKKLG 333 (636)
T ss_dssp TCTTCC
T ss_pred cCCCCC
Confidence 888874
No 42
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.77 E-value=3.6e-19 Score=119.77 Aligned_cols=135 Identities=24% Similarity=0.206 Sum_probs=69.7
Q ss_pred CccccCCccccCCCCccEEEccCCcceeechhhhccccccceeEeeccccccCcCccccCCCCccEEEccCCcccccch-
Q 040935 3 NIPRSIPLEIGDLSKLQVLDLSSNHIVGEIRVQLGKLFSLNKLILNMNQLYGGMPLKLDSLTKLQYLDLSANKLWSLIL- 81 (139)
Q Consensus 3 ~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~- 81 (139)
.+.+..+..+.++++|++|++.+|.+++..+..|..+++|+.+++++|.+....+..++.+++|+++++++|.+.....
T Consensus 63 ~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~ 142 (353)
T 2z80_A 63 RITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGET 142 (353)
T ss_dssp CCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSS
T ss_pred cCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCch
Confidence 3444334455555555555555555554444455555555555555555543333335555555555555555554433
Q ss_pred HhhhccccccEEecCCC-cccccCchhhhccCCCCeEEccCcccccccCccccCcCC
Q 040935 82 ENIDNLLKLCYLNLSNN-QFIQKIPIELEKLIPLSELDLNYNFLDVEIPFQICNMKS 137 (139)
Q Consensus 82 ~~~~~~~~L~~l~l~~n-~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~p~~~~~~~~ 137 (139)
..+..+++|+.+++.+| .+.+..+..++.+++|+.|++++|.+.+..|..++.+++
T Consensus 143 ~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~ 199 (353)
T 2z80_A 143 SLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQN 199 (353)
T ss_dssp CSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSE
T ss_pred hhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhcccc
Confidence 34445555555555555 233333444555555555555555555444555555444
No 43
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.76 E-value=7e-18 Score=116.65 Aligned_cols=125 Identities=28% Similarity=0.202 Sum_probs=113.8
Q ss_pred CCCccEEEccCCcceeechhhhccccccceeEeeccccccCcCccccCCCCccEEEccCCcccccchHhhhccccccEEe
Q 040935 15 LSKLQVLDLSSNHIVGEIRVQLGKLFSLNKLILNMNQLYGGMPLKLDSLTKLQYLDLSANKLWSLILENIDNLLKLCYLN 94 (139)
Q Consensus 15 l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~ 94 (139)
.++|+.+++.+|.+.+..+..+..+++|+.+++++|.+....+..++.+++|+++++++|.+....+..+..+++|+.|+
T Consensus 274 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 353 (455)
T 3v47_A 274 ASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLD 353 (455)
T ss_dssp TSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEE
T ss_pred ccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEE
Confidence 36899999999999988898999999999999999999888888999999999999999999988888899999999999
Q ss_pred cCCCcccccCchhhhccCCCCeEEccCcccccccCccccCcCCCC
Q 040935 95 LSNNQFIQKIPIELEKLIPLSELDLNYNFLDVEIPFQICNMKSLE 139 (139)
Q Consensus 95 l~~n~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~p~~~~~~~~L~ 139 (139)
+.+|.+++..+..+..+++|++|++++|.+++..+..+..+++|+
T Consensus 354 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 398 (455)
T 3v47_A 354 LSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQ 398 (455)
T ss_dssp CCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCC
T ss_pred CCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCccc
Confidence 999999888888899999999999999999965555677888774
No 44
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.76 E-value=3e-18 Score=113.21 Aligned_cols=130 Identities=20% Similarity=0.214 Sum_probs=86.3
Q ss_pred CccccCCCCccEEEccCCcceeech-hhhccccccceeEeeccccccCcCccccCCCCccEEEccCCcccc-cchHhhhc
Q 040935 9 PLEIGDLSKLQVLDLSSNHIVGEIR-VQLGKLFSLNKLILNMNQLYGGMPLKLDSLTKLQYLDLSANKLWS-LILENIDN 86 (139)
Q Consensus 9 ~~~~~~l~~L~~l~l~~~~~~~~~~-~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~-~~~~~~~~ 86 (139)
|+.+..+++|++|++.+|.+....+ ..+..+++|+.+++++|.+....+..+..+++|+++++++|.+.. ..+..+..
T Consensus 94 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~ 173 (306)
T 2z66_A 94 SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTE 173 (306)
T ss_dssp EEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTT
T ss_pred hhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhh
Confidence 4445666666666666666664333 356666777777777777666666666677777777777777665 34555666
Q ss_pred cccccEEecCCCcccccCchhhhccCCCCeEEccCcccccccCccccCcCCC
Q 040935 87 LLKLCYLNLSNNQFIQKIPIELEKLIPLSELDLNYNFLDVEIPFQICNMKSL 138 (139)
Q Consensus 87 ~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~p~~~~~~~~L 138 (139)
+++|+.|++.+|.+++..+..+..+++|+.|++++|.+++..+..+..+++|
T Consensus 174 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 225 (306)
T 2z66_A 174 LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSL 225 (306)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTC
T ss_pred CcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccC
Confidence 7777777777777766666667777777777777777775444456666655
No 45
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.76 E-value=1.3e-17 Score=115.10 Aligned_cols=136 Identities=30% Similarity=0.250 Sum_probs=93.1
Q ss_pred CCccccCCccccCCCCccEEEccCCcceeechhhhccccccceeEeeccccccCcCccccCCCCccEEEccCCcccccch
Q 040935 2 NNIPRSIPLEIGDLSKLQVLDLSSNHIVGEIRVQLGKLFSLNKLILNMNQLYGGMPLKLDSLTKLQYLDLSANKLWSLIL 81 (139)
Q Consensus 2 n~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~ 81 (139)
|.+....+..+.++++|+.|++++|.+....+..|..+++|+.|++++|.+....+..|..+++|+++++++|.+....+
T Consensus 74 n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~ 153 (440)
T 3zyj_A 74 NQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPS 153 (440)
T ss_dssp CCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECT
T ss_pred CcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCH
Confidence 56666667778888888888888888887777778888888888888888866656677778888888888887766555
Q ss_pred HhhhccccccEEecC-------------------------CCcccccCchhhhccCCCCeEEccCcccccccCccccCcC
Q 040935 82 ENIDNLLKLCYLNLS-------------------------NNQFIQKIPIELEKLIPLSELDLNYNFLDVEIPFQICNMK 136 (139)
Q Consensus 82 ~~~~~~~~L~~l~l~-------------------------~n~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~p~~~~~~~ 136 (139)
..+..+++|+.|++. +|.++. +| .+..+++|+.|++++|.+++..|..|..++
T Consensus 154 ~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 231 (440)
T 3zyj_A 154 YAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE-IP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLM 231 (440)
T ss_dssp TTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSS-CC-CCTTCSSCCEEECTTSCCCEECTTTTTTCT
T ss_pred HHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcc-cc-ccCCCcccCEEECCCCccCccChhhhccCc
Confidence 445555555555554 444422 22 244555666666667766655566666666
Q ss_pred CCC
Q 040935 137 SLE 139 (139)
Q Consensus 137 ~L~ 139 (139)
+|+
T Consensus 232 ~L~ 234 (440)
T 3zyj_A 232 HLQ 234 (440)
T ss_dssp TCC
T ss_pred cCC
Confidence 653
No 46
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.76 E-value=1.5e-17 Score=118.79 Aligned_cols=97 Identities=22% Similarity=0.121 Sum_probs=42.4
Q ss_pred ccccCCccccCCCCccEEEccCCcceeechhhhccccccceeEeeccccccCcCccccCCCCccEEEccCCcccccchHh
Q 040935 4 IPRSIPLEIGDLSKLQVLDLSSNHIVGEIRVQLGKLFSLNKLILNMNQLYGGMPLKLDSLTKLQYLDLSANKLWSLILEN 83 (139)
Q Consensus 4 ~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~ 83 (139)
+.+..+..+..++.|++|++.+|.+.+..+..|..+++|+.|++++|.+....+..|+.+++|+++++++|.+....+..
T Consensus 87 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 166 (597)
T 3oja_B 87 IEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDT 166 (597)
T ss_dssp CCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTT
T ss_pred CCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhh
Confidence 33333344444444444444444444433334444444444444444443332333344444444444444444444444
Q ss_pred hhccccccEEecCCCcc
Q 040935 84 IDNLLKLCYLNLSNNQF 100 (139)
Q Consensus 84 ~~~~~~L~~l~l~~n~~ 100 (139)
+..+++|+.|++.+|.+
T Consensus 167 ~~~l~~L~~L~L~~N~l 183 (597)
T 3oja_B 167 FQATTSLQNLQLSSNRL 183 (597)
T ss_dssp TTTCTTCCEEECTTSCC
T ss_pred hhcCCcCcEEECcCCCC
Confidence 44444444444444433
No 47
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.76 E-value=1.3e-17 Score=101.48 Aligned_cols=128 Identities=27% Similarity=0.245 Sum_probs=110.4
Q ss_pred CCcc-ccCCccccCCCCccEEEccCCcceeechhhhccccccceeEeeccccccCcCccccCCCCccEEEccCCcccccc
Q 040935 2 NNIP-RSIPLEIGDLSKLQVLDLSSNHIVGEIRVQLGKLFSLNKLILNMNQLYGGMPLKLDSLTKLQYLDLSANKLWSLI 80 (139)
Q Consensus 2 n~~~-~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~ 80 (139)
|.+. +.+|..+..+++|+.|++.+|.++.. ..+..+++|+.+++++|.+....|..+..+++|+++++++|.++...
T Consensus 34 n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 111 (168)
T 2ell_A 34 CKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDIS 111 (168)
T ss_dssp CBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSG
T ss_pred CCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcch
Confidence 5555 57788889999999999999999854 67889999999999999997767888778999999999999998764
Q ss_pred h-HhhhccccccEEecCCCcccccCc---hhhhccCCCCeEEccCcccccccCccc
Q 040935 81 L-ENIDNLLKLCYLNLSNNQFIQKIP---IELEKLIPLSELDLNYNFLDVEIPFQI 132 (139)
Q Consensus 81 ~-~~~~~~~~L~~l~l~~n~~~~~~~---~~~~~~~~L~~l~l~~n~l~~~~p~~~ 132 (139)
. ..+..+++|+.+++.+|.+++..+ ..+..+++|+.|++++|.+. .+|++.
T Consensus 112 ~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~~~ 166 (168)
T 2ell_A 112 TLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ-EAPDSD 166 (168)
T ss_dssp GGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC-BCCSSS
T ss_pred hHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh-hccccc
Confidence 3 678899999999999999976655 47899999999999999987 777643
No 48
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.76 E-value=1.3e-17 Score=115.48 Aligned_cols=137 Identities=29% Similarity=0.246 Sum_probs=94.2
Q ss_pred CCCccccCCccccCCCCccEEEccCCcceeechhhhccccccceeEeeccccccCcCccccCCCCccEEEccCCcccccc
Q 040935 1 MNNIPRSIPLEIGDLSKLQVLDLSSNHIVGEIRVQLGKLFSLNKLILNMNQLYGGMPLKLDSLTKLQYLDLSANKLWSLI 80 (139)
Q Consensus 1 ~n~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~ 80 (139)
+|.+.+..+..+.++++|+.|++++|.+....+..|..+++|+.|++++|.+....+..|+.+++|+++++++|.+....
T Consensus 84 ~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 163 (452)
T 3zyi_A 84 ENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIP 163 (452)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEEC
T ss_pred CCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeC
Confidence 35666667777888888888888888887766777788888888888888886666666777788888888887776655
Q ss_pred hHhhhcc-------------------------ccccEEecCCCcccccCchhhhccCCCCeEEccCcccccccCccccCc
Q 040935 81 LENIDNL-------------------------LKLCYLNLSNNQFIQKIPIELEKLIPLSELDLNYNFLDVEIPFQICNM 135 (139)
Q Consensus 81 ~~~~~~~-------------------------~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~p~~~~~~ 135 (139)
+..+..+ ++|+.|++.+|.+++. + .+..+++|+.|++++|.+++..|..|..+
T Consensus 164 ~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 241 (452)
T 3zyi_A 164 SYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM-P-NLTPLVGLEELEMSGNHFPEIRPGSFHGL 241 (452)
T ss_dssp TTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-C-CCTTCTTCCEEECTTSCCSEECGGGGTTC
T ss_pred HhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-c-cccccccccEEECcCCcCcccCcccccCc
Confidence 5444444 4455555555554332 2 34556667777777777776667777777
Q ss_pred CCCC
Q 040935 136 KSLE 139 (139)
Q Consensus 136 ~~L~ 139 (139)
++|+
T Consensus 242 ~~L~ 245 (452)
T 3zyi_A 242 SSLK 245 (452)
T ss_dssp TTCC
T ss_pred cCCC
Confidence 6664
No 49
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.76 E-value=9.8e-18 Score=119.57 Aligned_cols=137 Identities=20% Similarity=0.144 Sum_probs=78.5
Q ss_pred CCccccCCccccCCCCccEEEccCCcceeechh-hhccccccceeEeeccccccCcCccccCCCCccEEEccCCccccc-
Q 040935 2 NNIPRSIPLEIGDLSKLQVLDLSSNHIVGEIRV-QLGKLFSLNKLILNMNQLYGGMPLKLDSLTKLQYLDLSANKLWSL- 79 (139)
Q Consensus 2 n~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~-~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~- 79 (139)
|.+.+..|..+..+++|+.|++.+|.+.+..+. .+..+++|+.+++++|.+....+..++.+++|+++++++|.+.+.
T Consensus 386 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 465 (606)
T 3t6q_A 386 NEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGN 465 (606)
T ss_dssp CSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGE
T ss_pred CcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccc
Confidence 344444455555556666666666655543332 255555666666666665555555556666666666666665442
Q ss_pred --chHhhhccccccEEecCCCcccccCchhhhccCCCCeEEccCcccccccCccccCcCCC
Q 040935 80 --ILENIDNLLKLCYLNLSNNQFIQKIPIELEKLIPLSELDLNYNFLDVEIPFQICNMKSL 138 (139)
Q Consensus 80 --~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~p~~~~~~~~L 138 (139)
.+..+..+++|+.|++.+|.+++..+..++.+++|+.|++++|.+++..|..+..++.|
T Consensus 466 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L 526 (606)
T 3t6q_A 466 IQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI 526 (606)
T ss_dssp ECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC
T ss_pred cccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc
Confidence 12345556666666666666655555566666666666666666666666666555543
No 50
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.75 E-value=2.4e-18 Score=127.00 Aligned_cols=134 Identities=22% Similarity=0.260 Sum_probs=113.1
Q ss_pred CCccccCCccccCCCCccEEEccCCccee-----------------echhhhc--cccccceeEeeccccccCcCccccC
Q 040935 2 NNIPRSIPLEIGDLSKLQVLDLSSNHIVG-----------------EIRVQLG--KLFSLNKLILNMNQLYGGMPLKLDS 62 (139)
Q Consensus 2 n~~~~~~~~~~~~l~~L~~l~l~~~~~~~-----------------~~~~~~~--~l~~L~~l~l~~~~~~~~~~~~~~~ 62 (139)
|.+.+ +|+.+.++++|+.|++++|.+++ ..|..+. .+++|+.|++++|.+.+..|..++.
T Consensus 435 N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~ 513 (876)
T 4ecn_A 435 NRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYD 513 (876)
T ss_dssp CEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGG
T ss_pred Ccccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhC
Confidence 45556 78889999999999999999986 2777766 8999999999999988888999999
Q ss_pred CCCccEEEccCCc-ccc-cchHhhhccc-------cccEEecCCCcccccCch--hhhccCCCCeEEccCcccccccCcc
Q 040935 63 LTKLQYLDLSANK-LWS-LILENIDNLL-------KLCYLNLSNNQFIQKIPI--ELEKLIPLSELDLNYNFLDVEIPFQ 131 (139)
Q Consensus 63 ~~~L~~l~l~~n~-~~~-~~~~~~~~~~-------~L~~l~l~~n~~~~~~~~--~~~~~~~L~~l~l~~n~l~~~~p~~ 131 (139)
+++|+++++++|. +++ ..|..++.++ +|+.|++.+|.++ .+|. .++.+++|+.|++++|.++ .+| .
T Consensus 514 L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~ 590 (876)
T 4ecn_A 514 LPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-A 590 (876)
T ss_dssp CSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-C
T ss_pred CCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-h
Confidence 9999999999998 876 5676666665 9999999999987 6777 7888999999999999888 888 7
Q ss_pred ccCcCCCC
Q 040935 132 ICNMKSLE 139 (139)
Q Consensus 132 ~~~~~~L~ 139 (139)
++.+++|+
T Consensus 591 ~~~L~~L~ 598 (876)
T 4ecn_A 591 FGTNVKLT 598 (876)
T ss_dssp CCTTSEES
T ss_pred hcCCCcce
Confidence 77777653
No 51
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.75 E-value=3.2e-18 Score=102.21 Aligned_cols=124 Identities=23% Similarity=0.118 Sum_probs=103.6
Q ss_pred CCCCccEEEccCCcce-eechhhhccccccceeEeeccccccCcCccccCCCCccEEEccCCcccccchHhhhccccccE
Q 040935 14 DLSKLQVLDLSSNHIV-GEIRVQLGKLFSLNKLILNMNQLYGGMPLKLDSLTKLQYLDLSANKLWSLILENIDNLLKLCY 92 (139)
Q Consensus 14 ~l~~L~~l~l~~~~~~-~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~ 92 (139)
..+.++.|++.+|.++ +..|..+..+++|+.+++++|.+... ..++.+++|+++++++|.+....+..+..+++|+.
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 92 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTH 92 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCE
T ss_pred CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCE
Confidence 3477899999999987 56777888899999999999998655 77888999999999999998877777888999999
Q ss_pred EecCCCccccc-CchhhhccCCCCeEEccCcccccccC---ccccCcCCCC
Q 040935 93 LNLSNNQFIQK-IPIELEKLIPLSELDLNYNFLDVEIP---FQICNMKSLE 139 (139)
Q Consensus 93 l~l~~n~~~~~-~~~~~~~~~~L~~l~l~~n~l~~~~p---~~~~~~~~L~ 139 (139)
+++.+|.+++. .+..++.+++|++|++++|.+++..+ ..++.+++|+
T Consensus 93 L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~ 143 (149)
T 2je0_A 93 LNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLT 143 (149)
T ss_dssp EECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCC
T ss_pred EECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcc
Confidence 99999999663 23678999999999999999985444 3677777764
No 52
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.75 E-value=8.4e-18 Score=116.47 Aligned_cols=136 Identities=22% Similarity=0.192 Sum_probs=99.4
Q ss_pred CCccccCCccccCCCCccEEEccCCcceeechhhhccccccceeEeeccccccCcC------------------------
Q 040935 2 NNIPRSIPLEIGDLSKLQVLDLSSNHIVGEIRVQLGKLFSLNKLILNMNQLYGGMP------------------------ 57 (139)
Q Consensus 2 n~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~------------------------ 57 (139)
|.+.+..+..+.++++|++|++.+|.++...+..|..+++|+.|++++|.+....+
T Consensus 109 n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~ 188 (452)
T 3zyi_A 109 NSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYIS 188 (452)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEEC
T ss_pred CccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccC
Confidence 45555555666666666666666666664444455666666666666665543322
Q ss_pred -ccccCCCCccEEEccCCcccccchHhhhccccccEEecCCCcccccCchhhhccCCCCeEEccCcccccccCccccCcC
Q 040935 58 -LKLDSLTKLQYLDLSANKLWSLILENIDNLLKLCYLNLSNNQFIQKIPIELEKLIPLSELDLNYNFLDVEIPFQICNMK 136 (139)
Q Consensus 58 -~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~p~~~~~~~ 136 (139)
..|..+++|+++++++|.+.... .+..+++|+.|++.+|.+++..+..+..+++|+.|++++|.+++..|..|..++
T Consensus 189 ~~~~~~l~~L~~L~L~~n~l~~~~--~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 266 (452)
T 3zyi_A 189 EGAFEGLFNLKYLNLGMCNIKDMP--NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLA 266 (452)
T ss_dssp TTTTTTCTTCCEEECTTSCCSSCC--CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCT
T ss_pred hhhccCCCCCCEEECCCCcccccc--cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCC
Confidence 24556677777777777776542 366788999999999999888888999999999999999999988888898888
Q ss_pred CCC
Q 040935 137 SLE 139 (139)
Q Consensus 137 ~L~ 139 (139)
+|+
T Consensus 267 ~L~ 269 (452)
T 3zyi_A 267 SLV 269 (452)
T ss_dssp TCC
T ss_pred CCC
Confidence 874
No 53
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.75 E-value=8.7e-19 Score=123.65 Aligned_cols=135 Identities=26% Similarity=0.230 Sum_probs=68.6
Q ss_pred CCccccCCccccCCCCccEEEccCCcceeechhhhccccccceeEeeccccccCcCccccCCCCccEEEccCCccccc-c
Q 040935 2 NNIPRSIPLEIGDLSKLQVLDLSSNHIVGEIRVQLGKLFSLNKLILNMNQLYGGMPLKLDSLTKLQYLDLSANKLWSL-I 80 (139)
Q Consensus 2 n~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~-~ 80 (139)
|.+.+..|..+.++++|++|++++|.+.+..+..|..+++|+.+++++|.+....+..++.+++|+++++++|.+... .
T Consensus 36 n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 115 (549)
T 2z81_A 36 NKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGV 115 (549)
T ss_dssp SCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCS
T ss_pred CccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccch
Confidence 344444445555555555555555555544444555555555555555555444444455555555555555555432 2
Q ss_pred hHhhhccccccEEecCCCcccccC-chhhhccCCCCeEEccCcccccccCccccCcC
Q 040935 81 LENIDNLLKLCYLNLSNNQFIQKI-PIELEKLIPLSELDLNYNFLDVEIPFQICNMK 136 (139)
Q Consensus 81 ~~~~~~~~~L~~l~l~~n~~~~~~-~~~~~~~~~L~~l~l~~n~l~~~~p~~~~~~~ 136 (139)
+..+..+++|+.|++.+|...+.+ +..++.+++|++|++++|.+++..|..++.++
T Consensus 116 ~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~ 172 (549)
T 2z81_A 116 TSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIR 172 (549)
T ss_dssp SCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCS
T ss_pred hhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccc
Confidence 233445555555555555422222 23455555555556655555555555555444
No 54
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.75 E-value=2.7e-17 Score=102.31 Aligned_cols=109 Identities=24% Similarity=0.209 Sum_probs=98.7
Q ss_pred CCccEEEccCCcceeechhhhccccccceeEeeccccccCcCccccCCCCccEEEccCCcccccchHhhhccccccEEec
Q 040935 16 SKLQVLDLSSNHIVGEIRVQLGKLFSLNKLILNMNQLYGGMPLKLDSLTKLQYLDLSANKLWSLILENIDNLLKLCYLNL 95 (139)
Q Consensus 16 ~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l 95 (139)
.+++.|++.+|.++ ..|..|..+++|+.|++++|.++...+..|..+++|+++++++|.++...+..+..+++|+.|++
T Consensus 31 ~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L 109 (193)
T 2wfh_A 31 RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSL 109 (193)
T ss_dssp TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEEC
Confidence 58999999999998 67788999999999999999998887888999999999999999999988888999999999999
Q ss_pred CCCcccccCchhhhccCCCCeEEccCcccc
Q 040935 96 SNNQFIQKIPIELEKLIPLSELDLNYNFLD 125 (139)
Q Consensus 96 ~~n~~~~~~~~~~~~~~~L~~l~l~~n~l~ 125 (139)
.+|.++...+..+..+++|+.+++++|++.
T Consensus 110 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 110 HGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 999997766667889999999999999874
No 55
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.75 E-value=3e-17 Score=111.73 Aligned_cols=30 Identities=30% Similarity=0.360 Sum_probs=14.8
Q ss_pred hccCCCCeEEccCcccccccCccccCcCCC
Q 040935 109 EKLIPLSELDLNYNFLDVEIPFQICNMKSL 138 (139)
Q Consensus 109 ~~~~~L~~l~l~~n~l~~~~p~~~~~~~~L 138 (139)
..+++|+.|++++|.+.+..|..++.+++|
T Consensus 245 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 274 (390)
T 3o6n_A 245 LNYPGLVEVDLSYNELEKIMYHPFVKMQRL 274 (390)
T ss_dssp GGCTTCSEEECCSSCCCEEESGGGTTCSSC
T ss_pred cCCCCccEEECCCCcCCCcChhHccccccC
Confidence 344455555555555554445555544444
No 56
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.75 E-value=4.9e-18 Score=121.25 Aligned_cols=123 Identities=21% Similarity=0.184 Sum_probs=95.5
Q ss_pred cccCCccccCCCCccEEEccCCcceeechhhhccccccceeEeeccccccCcCccccCCCCccEEEccCCcccccchHhh
Q 040935 5 PRSIPLEIGDLSKLQVLDLSSNHIVGEIRVQLGKLFSLNKLILNMNQLYGGMPLKLDSLTKLQYLDLSANKLWSLILENI 84 (139)
Q Consensus 5 ~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~ 84 (139)
....+..+..++.|+.|++.+|.+.+..+..|..+++|+.|++++|.+....|..|+.+++|++|++++|.+....+..+
T Consensus 64 ~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~ 143 (597)
T 3oja_B 64 RKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIF 143 (597)
T ss_dssp SEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred CCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHh
Confidence 33334456677888888888888876666678888888888888888877777777888888888888888877766667
Q ss_pred hccccccEEecCCCcccccCchhhhccCCCCeEEccCcccccc
Q 040935 85 DNLLKLCYLNLSNNQFIQKIPIELEKLIPLSELDLNYNFLDVE 127 (139)
Q Consensus 85 ~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~l~~~ 127 (139)
..+++|+.|++.+|.+++..+..++.+++|+.|++++|.+++.
T Consensus 144 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 186 (597)
T 3oja_B 144 HNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV 186 (597)
T ss_dssp TTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC
T ss_pred ccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc
Confidence 7888888888888888777777778888888888888887743
No 57
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.75 E-value=1.4e-17 Score=108.63 Aligned_cols=137 Identities=27% Similarity=0.195 Sum_probs=95.3
Q ss_pred CCccccCCccccCCCCccEEEccCCcceeechhhhccccccceeEeeccccccCcCccccCCCCccEEEccCCcccccc-
Q 040935 2 NNIPRSIPLEIGDLSKLQVLDLSSNHIVGEIRVQLGKLFSLNKLILNMNQLYGGMPLKLDSLTKLQYLDLSANKLWSLI- 80 (139)
Q Consensus 2 n~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~- 80 (139)
|.+.+..+..+..+++|++|++.+|.+....+..+..+++|+.+++++|.+....+..++.+++|+++++++|.+....
T Consensus 62 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l 141 (276)
T 2z62_A 62 CEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKL 141 (276)
T ss_dssp CCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCC
T ss_pred CcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecC
Confidence 5566666667888888888888888887666677788888888888888876665656777888888888888877643
Q ss_pred hHhhhccccccEEecCCCcccccCchhhhccC---------------------------CCCeEEccCcccccccCcccc
Q 040935 81 LENIDNLLKLCYLNLSNNQFIQKIPIELEKLI---------------------------PLSELDLNYNFLDVEIPFQIC 133 (139)
Q Consensus 81 ~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~---------------------------~L~~l~l~~n~l~~~~p~~~~ 133 (139)
+..+..+++|+.|++.+|.+++..+..+..++ +|+.|++++|.+++..+..+.
T Consensus 142 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~ 221 (276)
T 2z62_A 142 PEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFD 221 (276)
T ss_dssp CGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSCCSCCCTTTTT
T ss_pred chhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccCCCcccEEECCCCceeecCHhHhc
Confidence 66677778888888888877655444443333 455666666666633333445
Q ss_pred CcCCC
Q 040935 134 NMKSL 138 (139)
Q Consensus 134 ~~~~L 138 (139)
.+++|
T Consensus 222 ~l~~L 226 (276)
T 2z62_A 222 RLTSL 226 (276)
T ss_dssp TCCSC
T ss_pred ccccc
Confidence 55554
No 58
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.75 E-value=1.6e-17 Score=114.76 Aligned_cols=136 Identities=25% Similarity=0.243 Sum_probs=92.8
Q ss_pred CCccccCCccccCCCCccEEEccCCcceeechhhhccccccceeEeeccccccCc-------------------------
Q 040935 2 NNIPRSIPLEIGDLSKLQVLDLSSNHIVGEIRVQLGKLFSLNKLILNMNQLYGGM------------------------- 56 (139)
Q Consensus 2 n~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~------------------------- 56 (139)
|.+....+.++.++++|++|++.+|.++...+..|..+++|+.|++++|.+....
T Consensus 98 n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~ 177 (440)
T 3zyj_A 98 NHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYIS 177 (440)
T ss_dssp SCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEEC
T ss_pred CcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeC
Confidence 3344444445555555555555555555333334555555555555555443322
Q ss_pred CccccCCCCccEEEccCCcccccchHhhhccccccEEecCCCcccccCchhhhccCCCCeEEccCcccccccCccccCcC
Q 040935 57 PLKLDSLTKLQYLDLSANKLWSLILENIDNLLKLCYLNLSNNQFIQKIPIELEKLIPLSELDLNYNFLDVEIPFQICNMK 136 (139)
Q Consensus 57 ~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~p~~~~~~~ 136 (139)
+..|..+++|+++++++|.++... .+..+++|+.|++.+|.+++..+..+..+++|+.|++++|.+++..+..|..++
T Consensus 178 ~~~~~~l~~L~~L~L~~n~l~~~~--~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 255 (440)
T 3zyj_A 178 EGAFEGLSNLRYLNLAMCNLREIP--NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQ 255 (440)
T ss_dssp TTTTTTCSSCCEEECTTSCCSSCC--CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCT
T ss_pred cchhhcccccCeecCCCCcCcccc--ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCC
Confidence 234556667777777777766442 366778999999999999888888999999999999999999988888888888
Q ss_pred CCC
Q 040935 137 SLE 139 (139)
Q Consensus 137 ~L~ 139 (139)
+|+
T Consensus 256 ~L~ 258 (440)
T 3zyj_A 256 SLV 258 (440)
T ss_dssp TCC
T ss_pred CCC
Confidence 874
No 59
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.74 E-value=7.1e-18 Score=114.77 Aligned_cols=115 Identities=23% Similarity=0.219 Sum_probs=74.5
Q ss_pred cccCCCCccEEEccCCcceeechhhhccccccceeEeeccccccCcCccccCCCCccEEEccCCcccccchHhhhccccc
Q 040935 11 EIGDLSKLQVLDLSSNHIVGEIRVQLGKLFSLNKLILNMNQLYGGMPLKLDSLTKLQYLDLSANKLWSLILENIDNLLKL 90 (139)
Q Consensus 11 ~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L 90 (139)
.+..+++|++|++.+|.+....+..|..+++|+.+++++|.+....|..++.+++|+++++++|.+....+..+..+++|
T Consensus 64 ~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L 143 (390)
T 3o6n_A 64 LLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKL 143 (390)
T ss_dssp HHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred HhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCC
Confidence 35556666666666666665555566666666667766666655555666666666777776666665555555666666
Q ss_pred cEEecCCCcccccCchhhhccCCCCeEEccCcccc
Q 040935 91 CYLNLSNNQFIQKIPIELEKLIPLSELDLNYNFLD 125 (139)
Q Consensus 91 ~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~l~ 125 (139)
++|++.+|.+++..+..+..+++|+.|++++|.++
T Consensus 144 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 178 (390)
T 3o6n_A 144 TTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT 178 (390)
T ss_dssp CEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCS
T ss_pred cEEECCCCccCccChhhccCCCCCCEEECCCCcCC
Confidence 77777666665555555666666666666666665
No 60
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.74 E-value=2.8e-17 Score=100.74 Aligned_cols=115 Identities=33% Similarity=0.271 Sum_probs=100.1
Q ss_pred CCCccEEEccCCcceeechhhhccccccceeEeeccccccCcCccccCCCCccEEEccCCcccccchHhhhccccccEEe
Q 040935 15 LSKLQVLDLSSNHIVGEIRVQLGKLFSLNKLILNMNQLYGGMPLKLDSLTKLQYLDLSANKLWSLILENIDNLLKLCYLN 94 (139)
Q Consensus 15 l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~ 94 (139)
.+.++.|++.+|.++...+..+..+++|+.+++++|.+....+..++.+++|+++++++|.++...+..+..+++|+.++
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~ 106 (177)
T 2o6r_A 27 PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELA 106 (177)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEE
Confidence 36899999999999866666788999999999999999776667788999999999999999988877788899999999
Q ss_pred cCCCcccccCchhhhccCCCCeEEccCcccccccC
Q 040935 95 LSNNQFIQKIPIELEKLIPLSELDLNYNFLDVEIP 129 (139)
Q Consensus 95 l~~n~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~p 129 (139)
+.+|.+++..+..+..+++|+.+++++|++.+..|
T Consensus 107 l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 107 LDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp CCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 99999976666567889999999999999876544
No 61
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.74 E-value=5.3e-18 Score=122.36 Aligned_cols=123 Identities=24% Similarity=0.134 Sum_probs=60.6
Q ss_pred CccccCCccccCCCCccEEEccCCcceeechhhhccccccceeEeeccccccCcCccccCCCCccEEEccCCcccccchH
Q 040935 3 NIPRSIPLEIGDLSKLQVLDLSSNHIVGEIRVQLGKLFSLNKLILNMNQLYGGMPLKLDSLTKLQYLDLSANKLWSLILE 82 (139)
Q Consensus 3 ~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~ 82 (139)
.+.+..+..+.+++.|++|++.+|.+.+..|..+..+++|+.+++++|.+....+..|+.+++|+++++++|.+....+.
T Consensus 36 ~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~ 115 (680)
T 1ziw_A 36 QLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNN 115 (680)
T ss_dssp CCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSC
T ss_pred CCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChh
Confidence 33343344455555555555555555544444455555555555555555333333455555555555555555444444
Q ss_pred hhhccccccEEecCCCcccccCchhhhccCCCCeEEccCcccc
Q 040935 83 NIDNLLKLCYLNLSNNQFIQKIPIELEKLIPLSELDLNYNFLD 125 (139)
Q Consensus 83 ~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~l~ 125 (139)
.+..+++|++|++.+|.+++..+..++.+++|++|++++|.++
T Consensus 116 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 158 (680)
T 1ziw_A 116 PFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQ 158 (680)
T ss_dssp TTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCC
T ss_pred HccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCccc
Confidence 4445555555555555554444444444445555555444444
No 62
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.74 E-value=1.2e-17 Score=110.70 Aligned_cols=136 Identities=18% Similarity=0.118 Sum_probs=101.1
Q ss_pred CCccccCCccc--cCCCCccEEEccCCcceeechhhhccc-----cccceeEeeccccccCcCccccCCCCccEEEccCC
Q 040935 2 NNIPRSIPLEI--GDLSKLQVLDLSSNHIVGEIRVQLGKL-----FSLNKLILNMNQLYGGMPLKLDSLTKLQYLDLSAN 74 (139)
Q Consensus 2 n~~~~~~~~~~--~~l~~L~~l~l~~~~~~~~~~~~~~~l-----~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n 74 (139)
|.+.+..|..+ ..+++|++|++++|.+++. |..+..+ ++|+.+++++|.+....+..++.+++|+++++++|
T Consensus 105 n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N 183 (312)
T 1wwl_A 105 LEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDN 183 (312)
T ss_dssp EBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSC
T ss_pred CcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCC
Confidence 56677778766 8899999999999999865 7777776 88999999999997777788889999999999999
Q ss_pred ccccc--chHhh--hccccccEEecCCCcccc--cCc-hhhhccCCCCeEEccCcccccccC-ccccCcCCC
Q 040935 75 KLWSL--ILENI--DNLLKLCYLNLSNNQFIQ--KIP-IELEKLIPLSELDLNYNFLDVEIP-FQICNMKSL 138 (139)
Q Consensus 75 ~~~~~--~~~~~--~~~~~L~~l~l~~n~~~~--~~~-~~~~~~~~L~~l~l~~n~l~~~~p-~~~~~~~~L 138 (139)
.+.+. .+..+ ..+++|+.|++.+|.+++ ..+ ..+..+++|+.|++++|.+++..| ..+..+++|
T Consensus 184 ~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L 255 (312)
T 1wwl_A 184 PELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQL 255 (312)
T ss_dssp TTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTC
T ss_pred CcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCC
Confidence 87543 12233 677888888888888852 122 233566788888888888876554 334444444
No 63
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.74 E-value=3.3e-17 Score=109.29 Aligned_cols=131 Identities=22% Similarity=0.224 Sum_probs=63.8
Q ss_pred ccccCCccccCCCCccEEEccCCccee--echhhhccccccceeEeeccccccCcCccccCCCCccEEEccCCcccccch
Q 040935 4 IPRSIPLEIGDLSKLQVLDLSSNHIVG--EIRVQLGKLFSLNKLILNMNQLYGGMPLKLDSLTKLQYLDLSANKLWSLIL 81 (139)
Q Consensus 4 ~~~~~~~~~~~l~~L~~l~l~~~~~~~--~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~ 81 (139)
+.+..+..+..+++|+.|++.+|.+.. ..+..+..+++|+.+++++|.+.. .|..+. ++|+++++++|.+....+
T Consensus 133 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~l~~~~~ 209 (330)
T 1xku_A 133 ITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQGLP--PSLTELHLDGNKITKVDA 209 (330)
T ss_dssp CCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-CCSSCC--TTCSEEECTTSCCCEECT
T ss_pred ccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc-CCcccc--ccCCEEECCCCcCCccCH
Confidence 333333345555555555555555432 334444555555555555554422 222211 344555555555544444
Q ss_pred HhhhccccccEEecCCCcccccCchhhhccCCCCeEEccCcccccccCccccCcCCC
Q 040935 82 ENIDNLLKLCYLNLSNNQFIQKIPIELEKLIPLSELDLNYNFLDVEIPFQICNMKSL 138 (139)
Q Consensus 82 ~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~p~~~~~~~~L 138 (139)
..+..+++|+.|++.+|.+++..+..+..+++|+.|++++|.++ .+|..+..+++|
T Consensus 210 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L 265 (330)
T 1xku_A 210 ASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYI 265 (330)
T ss_dssp GGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSC
T ss_pred HHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCc
Confidence 44555555555555555554444444555555555555555554 555555554444
No 64
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.74 E-value=4e-18 Score=125.77 Aligned_cols=107 Identities=19% Similarity=0.239 Sum_probs=95.4
Q ss_pred chhhhccccccceeEeecccccc-----------------CcCcccc--CCCCccEEEccCCcccccchHhhhccccccE
Q 040935 32 IRVQLGKLFSLNKLILNMNQLYG-----------------GMPLKLD--SLTKLQYLDLSANKLWSLILENIDNLLKLCY 92 (139)
Q Consensus 32 ~~~~~~~l~~L~~l~l~~~~~~~-----------------~~~~~~~--~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~ 92 (139)
+|..+..+++|+.|++++|.+++ .+|..++ .+++|+++++++|.+.+..|..+..+++|+.
T Consensus 440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~ 519 (876)
T 4ecn_A 440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQS 519 (876)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCE
T ss_pred hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCE
Confidence 67788999999999999999977 2788877 9999999999999988888888999999999
Q ss_pred EecCCCc-ccc-cCchhhhccC-------CCCeEEccCcccccccCc--cccCcCCCC
Q 040935 93 LNLSNNQ-FIQ-KIPIELEKLI-------PLSELDLNYNFLDVEIPF--QICNMKSLE 139 (139)
Q Consensus 93 l~l~~n~-~~~-~~~~~~~~~~-------~L~~l~l~~n~l~~~~p~--~~~~~~~L~ 139 (139)
|++.+|. +++ .+|..++.++ +|+.|++++|.++ .+|. .++.+++|+
T Consensus 520 L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~ 576 (876)
T 4ecn_A 520 LNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLG 576 (876)
T ss_dssp EECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCC
T ss_pred EECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCC
Confidence 9999998 877 7888777766 9999999999999 9998 899888874
No 65
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.73 E-value=5.4e-17 Score=113.98 Aligned_cols=135 Identities=24% Similarity=0.282 Sum_probs=109.3
Q ss_pred CCCccccCCccccCCCCccEEEccCCccee--echhhhccccccceeEeeccccccCcCc-cccCCCCccEEEccCCccc
Q 040935 1 MNNIPRSIPLEIGDLSKLQVLDLSSNHIVG--EIRVQLGKLFSLNKLILNMNQLYGGMPL-KLDSLTKLQYLDLSANKLW 77 (139)
Q Consensus 1 ~n~~~~~~~~~~~~l~~L~~l~l~~~~~~~--~~~~~~~~l~~L~~l~l~~~~~~~~~~~-~~~~~~~L~~l~l~~n~~~ 77 (139)
+|.+.+..|..+..+++|+.|++.+|.+.+ ..|..+..+++|+.+++++|.+....|. .+..+++|+++++++|.++
T Consensus 333 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~ 412 (520)
T 2z7x_B 333 NNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILT 412 (520)
T ss_dssp SSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCC
T ss_pred CCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCC
Confidence 366777778888899999999999998875 4556788899999999999998764554 4778889999999999887
Q ss_pred ccchHhhhccccccEEecCCCcccccCchhhhccCCCCeEEccCcccccccCcc-ccCcCCCC
Q 040935 78 SLILENIDNLLKLCYLNLSNNQFIQKIPIELEKLIPLSELDLNYNFLDVEIPFQ-ICNMKSLE 139 (139)
Q Consensus 78 ~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~p~~-~~~~~~L~ 139 (139)
+..+..+. ++|+.|++.+|.++ .+|..+..+++|++|++++|.++ .+|.. +..+++|+
T Consensus 413 ~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~ 471 (520)
T 2z7x_B 413 DTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQ 471 (520)
T ss_dssp GGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTCC
T ss_pred cchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCC-ccCHHHhccCCccc
Confidence 65554433 78999999999996 67777789999999999999998 67776 77777764
No 66
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.73 E-value=3.6e-17 Score=110.46 Aligned_cols=122 Identities=28% Similarity=0.290 Sum_probs=106.8
Q ss_pred CCccEEEccCCcceeechhhhc-cccccceeEeeccccccCcCccccCCCCccEEEccCCcccccchHhhhccccccEEe
Q 040935 16 SKLQVLDLSSNHIVGEIRVQLG-KLFSLNKLILNMNQLYGGMPLKLDSLTKLQYLDLSANKLWSLILENIDNLLKLCYLN 94 (139)
Q Consensus 16 ~~L~~l~l~~~~~~~~~~~~~~-~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~ 94 (139)
..++.|++++|.++...+..+. .+++|+.|++++|.+....+..|..+++|++|++++|.+....+..+..+++|+.|+
T Consensus 39 ~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 118 (361)
T 2xot_A 39 SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLL 118 (361)
T ss_dssp TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEE
Confidence 4588999999999977777777 899999999999999877778899999999999999999988888899999999999
Q ss_pred cCCCcccccCchhhhccCCCCeEEccCcccccccCccc----cCcCCC
Q 040935 95 LSNNQFIQKIPIELEKLIPLSELDLNYNFLDVEIPFQI----CNMKSL 138 (139)
Q Consensus 95 l~~n~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~p~~~----~~~~~L 138 (139)
+.+|.+++..+..+..+++|+.|++++|.++ .+|..+ ..+++|
T Consensus 119 L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~~~~l~~L 165 (361)
T 2xot_A 119 LYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS-RFPVELIKDGNKLPKL 165 (361)
T ss_dssp CCSSCCCEECTTTTTTCTTCCEEECCSSCCC-SCCGGGTC----CTTC
T ss_pred CCCCcccEECHHHhCCcccCCEEECCCCcCC-eeCHHHhcCcccCCcC
Confidence 9999998887888999999999999999998 566544 345555
No 67
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.73 E-value=9.1e-18 Score=107.43 Aligned_cols=136 Identities=16% Similarity=0.090 Sum_probs=64.4
Q ss_pred CCccccCCccccCCCCccEEEccCCc-ceeechhhhccccccceeEeec-cccccCcCccccCCCCccEEEccCC-----
Q 040935 2 NNIPRSIPLEIGDLSKLQVLDLSSNH-IVGEIRVQLGKLFSLNKLILNM-NQLYGGMPLKLDSLTKLQYLDLSAN----- 74 (139)
Q Consensus 2 n~~~~~~~~~~~~l~~L~~l~l~~~~-~~~~~~~~~~~l~~L~~l~l~~-~~~~~~~~~~~~~~~~L~~l~l~~n----- 74 (139)
|.+.+..+..+.++++|++|++.+|. ++...+..|..+++|+.+++++ |.+....+..|..+++|+++++.+|
T Consensus 41 n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~l 120 (239)
T 2xwt_C 41 THLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMF 120 (239)
T ss_dssp CCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCSC
T ss_pred CcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCccc
Confidence 33444444445555555555555554 4433333445555555555554 4443333344444444444444444
Q ss_pred ---------------------cccccchHhhhcccccc-EEecCCCcccccCchhhhccCCCCeEEccCcc-cccccCcc
Q 040935 75 ---------------------KLWSLILENIDNLLKLC-YLNLSNNQFIQKIPIELEKLIPLSELDLNYNF-LDVEIPFQ 131 (139)
Q Consensus 75 ---------------------~~~~~~~~~~~~~~~L~-~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~-l~~~~p~~ 131 (139)
.+....+..+..+++|+ .+++.+|.++. ++......++|+.+++++|. +++..+..
T Consensus 121 p~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~-i~~~~~~~~~L~~L~L~~n~~l~~i~~~~ 199 (239)
T 2xwt_C 121 PDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTS-VQGYAFNGTKLDAVYLNKNKYLTVIDKDA 199 (239)
T ss_dssp CCCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCE-ECTTTTTTCEEEEEECTTCTTCCEECTTT
T ss_pred cccccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcc-cCHhhcCCCCCCEEEcCCCCCcccCCHHH
Confidence 44444444455555555 55555555542 22222222455566666663 55333344
Q ss_pred ccCc-CCC
Q 040935 132 ICNM-KSL 138 (139)
Q Consensus 132 ~~~~-~~L 138 (139)
|..+ ++|
T Consensus 200 ~~~l~~~L 207 (239)
T 2xwt_C 200 FGGVYSGP 207 (239)
T ss_dssp TTTCSBCC
T ss_pred hhccccCC
Confidence 4444 443
No 68
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.73 E-value=2.6e-17 Score=102.21 Aligned_cols=119 Identities=21% Similarity=0.187 Sum_probs=104.3
Q ss_pred ccEEEccCCcceeechhhhccccccceeEeeccccccCcCc-cccCCCCccEEEccCCcccccchHhhhccccccEEecC
Q 040935 18 LQVLDLSSNHIVGEIRVQLGKLFSLNKLILNMNQLYGGMPL-KLDSLTKLQYLDLSANKLWSLILENIDNLLKLCYLNLS 96 (139)
Q Consensus 18 L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~-~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~ 96 (139)
-+.++++++.+. .+|..+.. .++.+++++|.+....+. .++.+++|+++++++|.++...+..+..+++|+.|++.
T Consensus 10 ~~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 86 (192)
T 1w8a_A 10 GTTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG 86 (192)
T ss_dssp TTEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CCEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECC
Confidence 368899999997 56654433 899999999999666554 48899999999999999999988899999999999999
Q ss_pred CCcccccCchhhhccCCCCeEEccCcccccccCccccCcCCCC
Q 040935 97 NNQFIQKIPIELEKLIPLSELDLNYNFLDVEIPFQICNMKSLE 139 (139)
Q Consensus 97 ~n~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~p~~~~~~~~L~ 139 (139)
+|.+++..+..+..+++|+.|++++|.+++..|..+..+++|+
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 129 (192)
T 1w8a_A 87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLT 129 (192)
T ss_dssp SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCC
T ss_pred CCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCC
Confidence 9999888887899999999999999999988899999888774
No 69
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.73 E-value=1.4e-17 Score=117.85 Aligned_cols=127 Identities=20% Similarity=0.214 Sum_probs=58.3
Q ss_pred ccCCCCccEEEccCCcceeech-hhhccccccceeEeeccccccCcCccccCCCCccEEEccCCccc-ccchHhhhcccc
Q 040935 12 IGDLSKLQVLDLSSNHIVGEIR-VQLGKLFSLNKLILNMNQLYGGMPLKLDSLTKLQYLDLSANKLW-SLILENIDNLLK 89 (139)
Q Consensus 12 ~~~l~~L~~l~l~~~~~~~~~~-~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~-~~~~~~~~~~~~ 89 (139)
+..+++|+.|++.+|.+.+..+ ..+..+++|+.+++++|.+....+..+..+++|+++++.+|.+. ...+..+..+++
T Consensus 392 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~ 471 (570)
T 2z63_A 392 FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRN 471 (570)
T ss_dssp EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTT
T ss_pred ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccC
Confidence 3444444444444444432222 23344444444444444444444444444455555555555443 223334444455
Q ss_pred ccEEecCCCcccccCchhhhccCCCCeEEccCcccccccCccccCcCCC
Q 040935 90 LCYLNLSNNQFIQKIPIELEKLIPLSELDLNYNFLDVEIPFQICNMKSL 138 (139)
Q Consensus 90 L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~p~~~~~~~~L 138 (139)
|+.|++.+|.+++..|..+..+++|+.|++++|.+++..|..+..+++|
T Consensus 472 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 520 (570)
T 2z63_A 472 LTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSL 520 (570)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTC
T ss_pred CCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCC
Confidence 5555555555544444444555555555555555544433444444443
No 70
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.73 E-value=2.3e-17 Score=98.45 Aligned_cols=118 Identities=25% Similarity=0.239 Sum_probs=102.4
Q ss_pred CCcc-ccCCccccCCCCccEEEccCCcceeechhhhccccccceeEeeccccccCcCccccCCCCccEEEccCCcccccc
Q 040935 2 NNIP-RSIPLEIGDLSKLQVLDLSSNHIVGEIRVQLGKLFSLNKLILNMNQLYGGMPLKLDSLTKLQYLDLSANKLWSLI 80 (139)
Q Consensus 2 n~~~-~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~ 80 (139)
|.+. +.+|..+..+++|+.|++.+|.+++. ..+..+++|+.+++++|.+....|..++.+++|+++++++|.+++..
T Consensus 27 n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~ 104 (149)
T 2je0_A 27 SRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLS 104 (149)
T ss_dssp CBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHH
T ss_pred CcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChH
Confidence 5565 57788889999999999999999854 67889999999999999997767888888999999999999998753
Q ss_pred -hHhhhccccccEEecCCCcccccCc---hhhhccCCCCeEEccC
Q 040935 81 -LENIDNLLKLCYLNLSNNQFIQKIP---IELEKLIPLSELDLNY 121 (139)
Q Consensus 81 -~~~~~~~~~L~~l~l~~n~~~~~~~---~~~~~~~~L~~l~l~~ 121 (139)
+..+..+++|+.+++.+|.+++..+ ..+..+++|+.|++++
T Consensus 105 ~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 105 TIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp HHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred HHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 4678899999999999999987665 5789999999998864
No 71
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.73 E-value=1.7e-17 Score=122.41 Aligned_cols=134 Identities=25% Similarity=0.210 Sum_probs=88.4
Q ss_pred CCCccccCCccccCCCCccEEEccCCcceeec-hhhhccccccceeEeeccccccCcCccccCCCCccEEEccCCccccc
Q 040935 1 MNNIPRSIPLEIGDLSKLQVLDLSSNHIVGEI-RVQLGKLFSLNKLILNMNQLYGGMPLKLDSLTKLQYLDLSANKLWSL 79 (139)
Q Consensus 1 ~n~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~-~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~ 79 (139)
+|.+.+..+..+.++++|++|++++|...... |..|..+++|+.|++++|.+....|..|+.+++|+++++++|.+.+.
T Consensus 33 ~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~ 112 (844)
T 3j0a_A 33 FNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDA 112 (844)
T ss_dssp SCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSC
T ss_pred CCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcc
Confidence 35566666677777777777777777433233 56677777777777777777666677777777777777777777653
Q ss_pred chH--hhhccccccEEecCCCcccccCc-hhhhccCCCCeEEccCcccccccCccccC
Q 040935 80 ILE--NIDNLLKLCYLNLSNNQFIQKIP-IELEKLIPLSELDLNYNFLDVEIPFQICN 134 (139)
Q Consensus 80 ~~~--~~~~~~~L~~l~l~~n~~~~~~~-~~~~~~~~L~~l~l~~n~l~~~~p~~~~~ 134 (139)
.+. .+..+++|++|++.+|.+++..+ ..++.+++|++|++++|.+++..|..++.
T Consensus 113 ~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~ 170 (844)
T 3j0a_A 113 VLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEP 170 (844)
T ss_dssp CSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHH
T ss_pred cccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHccc
Confidence 333 26667777777777777655433 45677777777777777776555555543
No 72
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.72 E-value=4.1e-17 Score=117.77 Aligned_cols=130 Identities=22% Similarity=0.199 Sum_probs=116.2
Q ss_pred CCccccCCCCccEEEccCCcceeechhhhccccccceeEeeccccccCcCccccCCCCccEEEccCCcccccchHhhhcc
Q 040935 8 IPLEIGDLSKLQVLDLSSNHIVGEIRVQLGKLFSLNKLILNMNQLYGGMPLKLDSLTKLQYLDLSANKLWSLILENIDNL 87 (139)
Q Consensus 8 ~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~ 87 (139)
+|..+. ..+++|++++|.+++..+..|..+++|+.+++++|.+....|..++.+++|+++++++|.+....+..+..+
T Consensus 19 ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l 96 (680)
T 1ziw_A 19 VPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFC 96 (680)
T ss_dssp CCSCSC--TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred cccccC--CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccC
Confidence 444443 689999999999997777789999999999999999988888999999999999999999998877789999
Q ss_pred ccccEEecCCCcccccCchhhhccCCCCeEEccCcccccccCccccCcCCCC
Q 040935 88 LKLCYLNLSNNQFIQKIPIELEKLIPLSELDLNYNFLDVEIPFQICNMKSLE 139 (139)
Q Consensus 88 ~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~p~~~~~~~~L~ 139 (139)
++|++|++.+|.+++..+..++.+++|++|++++|.+++..|..++.+++|+
T Consensus 97 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 148 (680)
T 1ziw_A 97 TNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQ 148 (680)
T ss_dssp TTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCC
T ss_pred CCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCC
Confidence 9999999999999777777899999999999999999988888888888774
No 73
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.72 E-value=4.5e-17 Score=104.18 Aligned_cols=133 Identities=19% Similarity=0.138 Sum_probs=92.9
Q ss_pred CCccccCCccccCCCCccEEEccCCcceeechhhhccccccc---eeEeecc-ccccCcCccccCCCCcc-EEEccCCcc
Q 040935 2 NNIPRSIPLEIGDLSKLQVLDLSSNHIVGEIRVQLGKLFSLN---KLILNMN-QLYGGMPLKLDSLTKLQ-YLDLSANKL 76 (139)
Q Consensus 2 n~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~---~l~l~~~-~~~~~~~~~~~~~~~L~-~l~l~~n~~ 76 (139)
|.+....+..+.++++|++|++.+|.+++ .|. +..+++++ .+++++| .+....+..|..+++|+ ++++++|.+
T Consensus 91 n~l~~i~~~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l 168 (239)
T 2xwt_C 91 RNLTYIDPDALKELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGF 168 (239)
T ss_dssp TTCCEECTTSEECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCC
T ss_pred CCeeEcCHHHhCCCCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCC
Confidence 33444444455555555555555555542 333 44555555 6666666 66555556688899999 999999999
Q ss_pred cccchHhhhccccccEEecCCCc-ccccCchhhhcc-CCCCeEEccCcccccccCc-cccCcCCC
Q 040935 77 WSLILENIDNLLKLCYLNLSNNQ-FIQKIPIELEKL-IPLSELDLNYNFLDVEIPF-QICNMKSL 138 (139)
Q Consensus 77 ~~~~~~~~~~~~~L~~l~l~~n~-~~~~~~~~~~~~-~~L~~l~l~~n~l~~~~p~-~~~~~~~L 138 (139)
....+..+.. ++|+.+++.+|. +++..+..+..+ ++|+.+++++|.++ .+|. .+.+++.|
T Consensus 169 ~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~-~l~~~~~~~L~~L 231 (239)
T 2xwt_C 169 TSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT-ALPSKGLEHLKEL 231 (239)
T ss_dssp CEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCC-CCCCTTCTTCSEE
T ss_pred cccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccc-cCChhHhccCcee
Confidence 8776666666 899999999995 876666778888 99999999999998 5554 45555543
No 74
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.71 E-value=5.9e-17 Score=99.29 Aligned_cols=124 Identities=19% Similarity=0.174 Sum_probs=100.4
Q ss_pred ccccCCCCccEEEccCCcceeechhhhcccc-ccceeEeeccccccCcCccccCCCCccEEEccCCcccccchHhhhccc
Q 040935 10 LEIGDLSKLQVLDLSSNHIVGEIRVQLGKLF-SLNKLILNMNQLYGGMPLKLDSLTKLQYLDLSANKLWSLILENIDNLL 88 (139)
Q Consensus 10 ~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~-~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~ 88 (139)
+.+..+.+++.|++.+|.++ ..+. +..+. +|+.+++++|.+... ..++.+++|+++++++|.++...+..+..++
T Consensus 13 ~~~~~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 88 (176)
T 1a9n_A 13 AQYTNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALP 88 (176)
T ss_dssp CEEECTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCT
T ss_pred HhcCCcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCC
Confidence 34667889999999999988 4454 44444 899999999998654 6778899999999999999887666678899
Q ss_pred cccEEecCCCcccccCch--hhhccCCCCeEEccCcccccccCcc----ccCcCCCC
Q 040935 89 KLCYLNLSNNQFIQKIPI--ELEKLIPLSELDLNYNFLDVEIPFQ----ICNMKSLE 139 (139)
Q Consensus 89 ~L~~l~l~~n~~~~~~~~--~~~~~~~L~~l~l~~n~l~~~~p~~----~~~~~~L~ 139 (139)
+|+.|++.+|.+. .++. .+..+++|+.+++++|+++ .+|.. ++.+++|+
T Consensus 89 ~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~ 143 (176)
T 1a9n_A 89 DLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVR 143 (176)
T ss_dssp TCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCS
T ss_pred CCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccc
Confidence 9999999999984 4454 6888999999999999998 66764 77777664
No 75
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.71 E-value=3.8e-16 Score=104.15 Aligned_cols=121 Identities=21% Similarity=0.228 Sum_probs=78.9
Q ss_pred CCccccCCccccCCCCccEEEccCCcceeechhhhccccccceeEeeccccccCcCccccCCCCccEEEccCCcccccch
Q 040935 2 NNIPRSIPLEIGDLSKLQVLDLSSNHIVGEIRVQLGKLFSLNKLILNMNQLYGGMPLKLDSLTKLQYLDLSANKLWSLIL 81 (139)
Q Consensus 2 n~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~ 81 (139)
|.+.+..+..+.++++|++|++.+|.++...|..+..+++|+.+++++|.+. ..|..+. ++|+++++++|.+....+
T Consensus 62 n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~ 138 (330)
T 1xku_A 62 NKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMP--KTLQELRVHENEITKVRK 138 (330)
T ss_dssp SCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCH
T ss_pred CcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCC-ccChhhc--ccccEEECCCCcccccCH
Confidence 5566666667778888888888888887666777788888888888888774 3343332 566777777777666666
Q ss_pred HhhhccccccEEecCCCcccc--cCchhhhccCCCCeEEccCcccc
Q 040935 82 ENIDNLLKLCYLNLSNNQFIQ--KIPIELEKLIPLSELDLNYNFLD 125 (139)
Q Consensus 82 ~~~~~~~~L~~l~l~~n~~~~--~~~~~~~~~~~L~~l~l~~n~l~ 125 (139)
..+..+++|+.+++.+|.+.. ..+..+..+++|+.|++++|.++
T Consensus 139 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~ 184 (330)
T 1xku_A 139 SVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT 184 (330)
T ss_dssp HHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC
T ss_pred hHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc
Confidence 666666777777777766632 33444555555555555444443
No 76
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.70 E-value=1.7e-16 Score=112.59 Aligned_cols=134 Identities=25% Similarity=0.310 Sum_probs=104.0
Q ss_pred CCccccCCccccCCCCccEEEccCCccee--echhhhccccccceeEeeccccccCcC-ccccCCCCccEEEccCCcccc
Q 040935 2 NNIPRSIPLEIGDLSKLQVLDLSSNHIVG--EIRVQLGKLFSLNKLILNMNQLYGGMP-LKLDSLTKLQYLDLSANKLWS 78 (139)
Q Consensus 2 n~~~~~~~~~~~~l~~L~~l~l~~~~~~~--~~~~~~~~l~~L~~l~l~~~~~~~~~~-~~~~~~~~L~~l~l~~n~~~~ 78 (139)
|.+.+..|..+..+++|+.|++.+|.+++ ..|..+..+++|+.+++++|.+....| ..+..+++|+++++++|.+++
T Consensus 363 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~ 442 (562)
T 3a79_B 363 NVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTG 442 (562)
T ss_dssp SCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCG
T ss_pred CccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCc
Confidence 56677777888888888888888888875 234567888888889998888866344 457778888888888888875
Q ss_pred cchHhhhccccccEEecCCCcccccCchhhhccCCCCeEEccCcccccccCcc-ccCcCCCC
Q 040935 79 LILENIDNLLKLCYLNLSNNQFIQKIPIELEKLIPLSELDLNYNFLDVEIPFQ-ICNMKSLE 139 (139)
Q Consensus 79 ~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~p~~-~~~~~~L~ 139 (139)
..+..+. ++|+.|++.+|.++ .+|..+..+++|+.|++++|.++ .+|.. +..+++|+
T Consensus 443 ~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~ 500 (562)
T 3a79_B 443 SVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQ 500 (562)
T ss_dssp GGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTTCC
T ss_pred chhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCCCC
Confidence 5444332 68999999999985 56777778999999999999998 67776 77777764
No 77
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.70 E-value=6.3e-17 Score=114.20 Aligned_cols=129 Identities=29% Similarity=0.258 Sum_probs=111.9
Q ss_pred CCccccCCCCccEEEccCCcceeechhhhccccccceeEeeccccccCcCccccCCCCccEEEccCCcccccchHhhhcc
Q 040935 8 IPLEIGDLSKLQVLDLSSNHIVGEIRVQLGKLFSLNKLILNMNQLYGGMPLKLDSLTKLQYLDLSANKLWSLILENIDNL 87 (139)
Q Consensus 8 ~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~ 87 (139)
+|+.+. +.+++|++++|.+++..+..|..+++|+.+++++|.+....|..|+.+++|+++++++|.+.+..+..+..+
T Consensus 20 ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 97 (549)
T 2z81_A 20 IPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPL 97 (549)
T ss_dssp CCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTC
T ss_pred ccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccC
Confidence 444432 789999999999998778899999999999999999988888899999999999999999999888889999
Q ss_pred ccccEEecCCCccccc-CchhhhccCCCCeEEccCcccccccC-ccccCcCCC
Q 040935 88 LKLCYLNLSNNQFIQK-IPIELEKLIPLSELDLNYNFLDVEIP-FQICNMKSL 138 (139)
Q Consensus 88 ~~L~~l~l~~n~~~~~-~~~~~~~~~~L~~l~l~~n~l~~~~p-~~~~~~~~L 138 (139)
++|++|++.+|.+++. .+..++.+++|++|++++|.+.+.+| ..++.+++|
T Consensus 98 ~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L 150 (549)
T 2z81_A 98 SSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSL 150 (549)
T ss_dssp TTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEE
T ss_pred CCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhccccc
Confidence 9999999999999763 45678999999999999998544665 577777765
No 78
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.70 E-value=8.4e-17 Score=107.44 Aligned_cols=131 Identities=22% Similarity=0.216 Sum_probs=72.6
Q ss_pred CCccccCCccccCCCCccEEEccCCccee--echhhhccc--------------------cccceeEeeccccccCcCcc
Q 040935 2 NNIPRSIPLEIGDLSKLQVLDLSSNHIVG--EIRVQLGKL--------------------FSLNKLILNMNQLYGGMPLK 59 (139)
Q Consensus 2 n~~~~~~~~~~~~l~~L~~l~l~~~~~~~--~~~~~~~~l--------------------~~L~~l~l~~~~~~~~~~~~ 59 (139)
|.+....+..+..+++|+.|++.+|.++. ..+..+..+ ++|+.+++++|.+....+..
T Consensus 133 n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~ 212 (332)
T 2ft3_A 133 NRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELED 212 (332)
T ss_dssp SCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCCSSSCSSCSCCBCCSSCCCCCCTTS
T ss_pred CccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEEECcCCCCCccCccccCCCCEEECCCCcCCccCHHH
Confidence 34444444456666667777766666542 333333333 23444445555554444455
Q ss_pred ccCCCCccEEEccCCcccccchHhhhccccccEEecCCCcccccCchhhhccCCCCeEEccCcccccccCcccc
Q 040935 60 LDSLTKLQYLDLSANKLWSLILENIDNLLKLCYLNLSNNQFIQKIPIELEKLIPLSELDLNYNFLDVEIPFQIC 133 (139)
Q Consensus 60 ~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~p~~~~ 133 (139)
+..+++|+++++++|.+....+..+..+++|+.+++.+|.++ .+|..+..+++|+.|++++|.+++..+..|+
T Consensus 213 l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~ 285 (332)
T 2ft3_A 213 LLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFC 285 (332)
T ss_dssp STTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSS
T ss_pred hcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHcc
Confidence 555666666666666666555555666666666666666664 4455566666666666666666644334443
No 79
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.70 E-value=8.1e-17 Score=108.32 Aligned_cols=123 Identities=25% Similarity=0.207 Sum_probs=106.8
Q ss_pred CCccEEEccCCcceeechhhhccccccceeEeeccccccCcCccccCCCCccEEEccCCcccccchHhhhccccccEEec
Q 040935 16 SKLQVLDLSSNHIVGEIRVQLGKLFSLNKLILNMNQLYGGMPLKLDSLTKLQYLDLSANKLWSLILENIDNLLKLCYLNL 95 (139)
Q Consensus 16 ~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l 95 (139)
+.+++|++++|.++...+..+..+++|+.+++++|.+....+..++.+++|+++++++|.++...+..+..+++|+.|++
T Consensus 52 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 131 (353)
T 2z80_A 52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNL 131 (353)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEEC
T ss_pred ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEEC
Confidence 48999999999999766668999999999999999998777888999999999999999999887777899999999999
Q ss_pred CCCcccccCc-hhhhccCCCCeEEccCc-ccccccCccccCcCCC
Q 040935 96 SNNQFIQKIP-IELEKLIPLSELDLNYN-FLDVEIPFQICNMKSL 138 (139)
Q Consensus 96 ~~n~~~~~~~-~~~~~~~~L~~l~l~~n-~l~~~~p~~~~~~~~L 138 (139)
.+|.+++... ..+..+++|++|++++| .+....+..++.+++|
T Consensus 132 ~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L 176 (353)
T 2z80_A 132 LGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFL 176 (353)
T ss_dssp TTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEE
T ss_pred CCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCC
Confidence 9999965443 36889999999999999 4765556778877765
No 80
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.70 E-value=2.7e-16 Score=105.01 Aligned_cols=96 Identities=22% Similarity=0.276 Sum_probs=56.8
Q ss_pred CCccccCCccccCCCCccEEEccCCcceeechhhhccccccceeEeeccccccCcCccccCCCCccEEEccCCcccccch
Q 040935 2 NNIPRSIPLEIGDLSKLQVLDLSSNHIVGEIRVQLGKLFSLNKLILNMNQLYGGMPLKLDSLTKLQYLDLSANKLWSLIL 81 (139)
Q Consensus 2 n~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~ 81 (139)
|.+....+..+.++++|++|++.+|.++...|..+..+++|+.+++++|.+. ..|..+. ++|+++++++|.+....+
T Consensus 64 n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~ 140 (332)
T 2ft3_A 64 NDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPK 140 (332)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCS
T ss_pred CcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCC-ccCcccc--ccCCEEECCCCccCccCH
Confidence 4555555666777777777777777777665666777777777777777663 3333222 445555555555554444
Q ss_pred HhhhccccccEEecCCCcc
Q 040935 82 ENIDNLLKLCYLNLSNNQF 100 (139)
Q Consensus 82 ~~~~~~~~L~~l~l~~n~~ 100 (139)
..+..+++|+.+++.+|.+
T Consensus 141 ~~~~~l~~L~~L~l~~n~l 159 (332)
T 2ft3_A 141 GVFSGLRNMNCIEMGGNPL 159 (332)
T ss_dssp GGGSSCSSCCEEECCSCCC
T ss_pred hHhCCCccCCEEECCCCcc
Confidence 4444555555555555444
No 81
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.69 E-value=2.4e-16 Score=97.96 Aligned_cols=118 Identities=24% Similarity=0.246 Sum_probs=101.4
Q ss_pred ccEEEccCCcceeechhhhccccccceeEeeccccccCcCccccCCCCccEEEccCCcccccchHhhhccccccEEecCC
Q 040935 18 LQVLDLSSNHIVGEIRVQLGKLFSLNKLILNMNQLYGGMPLKLDSLTKLQYLDLSANKLWSLILENIDNLLKLCYLNLSN 97 (139)
Q Consensus 18 L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~ 97 (139)
-+.+++.++.++ ..|..+ ...++.+++++|.+. .+|..+..+++|+++++++|.++...+..|..+++|+.|++.+
T Consensus 12 ~~~l~~~~~~l~-~ip~~~--~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~ 87 (193)
T 2wfh_A 12 DTVVRCSNKGLK-VLPKGI--PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSY 87 (193)
T ss_dssp TTEEECTTSCCS-SCCSCC--CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEcCCCCCC-cCCCCC--CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCC
Confidence 367899999987 566543 257999999999994 6678999999999999999999998888899999999999999
Q ss_pred CcccccCchhhhccCCCCeEEccCcccccccCccccCcCCCC
Q 040935 98 NQFIQKIPIELEKLIPLSELDLNYNFLDVEIPFQICNMKSLE 139 (139)
Q Consensus 98 n~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~p~~~~~~~~L~ 139 (139)
|.+++..+..+..+++|+.|++++|.++...+..|..+++|+
T Consensus 88 N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 129 (193)
T 2wfh_A 88 NRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALS 129 (193)
T ss_dssp SCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCC
T ss_pred CccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCcccc
Confidence 999888777899999999999999999954445677787764
No 82
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.69 E-value=2.4e-16 Score=110.72 Aligned_cols=119 Identities=28% Similarity=0.286 Sum_probs=90.6
Q ss_pred CCccccCCccccCCCCccEEEccCCcceeechhhhccccccceeEeeccccccCcCccccCCCCccEEEccCCcccccch
Q 040935 2 NNIPRSIPLEIGDLSKLQVLDLSSNHIVGEIRVQLGKLFSLNKLILNMNQLYGGMPLKLDSLTKLQYLDLSANKLWSLIL 81 (139)
Q Consensus 2 n~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~ 81 (139)
|.+. .+|..+. +.+++|++++|.+.+..+..|..+++|+.+++++|.+.+..|..|+.+++|+++++++|.++....
T Consensus 10 n~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~ 86 (520)
T 2z7x_B 10 NGLI-HVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISC 86 (520)
T ss_dssp SCCS-SCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEEEC
T ss_pred CCcc-ccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceeecCc
Confidence 4455 3555444 788888888888886666778888888888888888877777788888888888888888875433
Q ss_pred HhhhccccccEEecCCCcccc-cCchhhhccCCCCeEEccCccccc
Q 040935 82 ENIDNLLKLCYLNLSNNQFIQ-KIPIELEKLIPLSELDLNYNFLDV 126 (139)
Q Consensus 82 ~~~~~~~~L~~l~l~~n~~~~-~~~~~~~~~~~L~~l~l~~n~l~~ 126 (139)
. .+++|++|++.+|.+++ .+|..++.+++|++|++++|.+++
T Consensus 87 ~---~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~ 129 (520)
T 2z7x_B 87 H---PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK 129 (520)
T ss_dssp C---CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG
T ss_pred c---ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch
Confidence 3 67888888888888866 356778888888888888887764
No 83
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.68 E-value=1e-16 Score=106.13 Aligned_cols=134 Identities=16% Similarity=-0.006 Sum_probs=88.5
Q ss_pred CCCccccCCccc--cCCCCccEEEccCCcceeech----hhhccccccceeEeeccccccCcCccccCCCCccEEEccCC
Q 040935 1 MNNIPRSIPLEI--GDLSKLQVLDLSSNHIVGEIR----VQLGKLFSLNKLILNMNQLYGGMPLKLDSLTKLQYLDLSAN 74 (139)
Q Consensus 1 ~n~~~~~~~~~~--~~l~~L~~l~l~~~~~~~~~~----~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n 74 (139)
+|.+.+..|..+ ..+++|++|++++|.+.+..+ ..+..+++|+.+++++|.+....+..++.+++|+++++++|
T Consensus 100 ~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 179 (310)
T 4glp_A 100 DLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDN 179 (310)
T ss_dssp SCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSC
T ss_pred CCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCC
Confidence 356677777776 778888888888888764322 33446778888888888886666677778888888888888
Q ss_pred ccccc---ch-HhhhccccccEEecCCCcccccCch----hhhccCCCCeEEccCcccccccCccccCc
Q 040935 75 KLWSL---IL-ENIDNLLKLCYLNLSNNQFIQKIPI----ELEKLIPLSELDLNYNFLDVEIPFQICNM 135 (139)
Q Consensus 75 ~~~~~---~~-~~~~~~~~L~~l~l~~n~~~~~~~~----~~~~~~~L~~l~l~~n~l~~~~p~~~~~~ 135 (139)
.+.+. .. ..+..+++|+.|++.+|.++. ++. .++.+++|++|++++|.+++..|+.++.+
T Consensus 180 ~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~ 247 (310)
T 4glp_A 180 PGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRC 247 (310)
T ss_dssp TTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSC
T ss_pred CCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhc
Confidence 76432 11 112456677777777777642 222 23556777777777777765556666555
No 84
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.68 E-value=3.9e-17 Score=118.90 Aligned_cols=124 Identities=27% Similarity=0.308 Sum_probs=104.1
Q ss_pred cCCccccCCCCccEEEccCCcceeechhhhccccccceeEeeccccccCcCccccCCCCccEEEccCCcccccchHhhhc
Q 040935 7 SIPLEIGDLSKLQVLDLSSNHIVGEIRVQLGKLFSLNKLILNMNQLYGGMPLKLDSLTKLQYLDLSANKLWSLILENIDN 86 (139)
Q Consensus 7 ~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~ 86 (139)
..++.+..+..|+.|++++|.+. .+|..+..+++|+.|++++|.++ .+|..++.+++|++|++++|.++. .|..++.
T Consensus 215 ~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp~~~~~ 291 (727)
T 4b8c_D 215 MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLTS-LPAELGS 291 (727)
T ss_dssp -------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCSS-CCSSGGG
T ss_pred cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCCc-cChhhcC
Confidence 34677889999999999999998 67777779999999999999995 778889999999999999999984 4777899
Q ss_pred cccccEEecCCCcccccCchhhhccCCCCeEEccCcccccccCccccC
Q 040935 87 LLKLCYLNLSNNQFIQKIPIELEKLIPLSELDLNYNFLDVEIPFQICN 134 (139)
Q Consensus 87 ~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~p~~~~~ 134 (139)
+++|+.|++.+|.++ .+|..++.+++|+.|++++|.+++.+|..+..
T Consensus 292 l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~ 338 (727)
T 4b8c_D 292 CFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTE 338 (727)
T ss_dssp GTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHH
T ss_pred CCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhh
Confidence 999999999999995 67778999999999999999999888876643
No 85
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.68 E-value=2e-16 Score=98.56 Aligned_cols=122 Identities=17% Similarity=0.283 Sum_probs=105.4
Q ss_pred ccCCCCccEEEccCCcceeechhhhccccccceeEeeccccccCcCccccCCCCccEEEccCCcccccchHhhhcccccc
Q 040935 12 IGDLSKLQVLDLSSNHIVGEIRVQLGKLFSLNKLILNMNQLYGGMPLKLDSLTKLQYLDLSANKLWSLILENIDNLLKLC 91 (139)
Q Consensus 12 ~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~ 91 (139)
...++.++.|++.++.+. ..+ .+..+++|+.+++++|.+. .+..+..+++|+++++++|.+....+..+..+++|+
T Consensus 40 ~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 115 (197)
T 4ezg_A 40 EAQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLT 115 (197)
T ss_dssp HHHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCC
T ss_pred hhhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCC
Confidence 356788999999999998 566 6889999999999999763 335788899999999999999887777788999999
Q ss_pred EEecCCCcccccCchhhhccCCCCeEEccCcc-cccccCccccCcCCCC
Q 040935 92 YLNLSNNQFIQKIPIELEKLIPLSELDLNYNF-LDVEIPFQICNMKSLE 139 (139)
Q Consensus 92 ~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~-l~~~~p~~~~~~~~L~ 139 (139)
.|++.+|.+++..+..++.+++|++|++++|. ++ .+| .+..+++|+
T Consensus 116 ~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~ 162 (197)
T 4ezg_A 116 LLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELK 162 (197)
T ss_dssp EEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCC
T ss_pred EEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCC
Confidence 99999999988778889999999999999998 65 666 688888774
No 86
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.68 E-value=8.1e-16 Score=101.15 Aligned_cols=117 Identities=29% Similarity=0.372 Sum_probs=51.5
Q ss_pred ccCCCCccEEEccCCcceeechhhhccccccceeEeeccccccCcCccccCCCCccEEEccCCcccccchHhhhcccccc
Q 040935 12 IGDLSKLQVLDLSSNHIVGEIRVQLGKLFSLNKLILNMNQLYGGMPLKLDSLTKLQYLDLSANKLWSLILENIDNLLKLC 91 (139)
Q Consensus 12 ~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~ 91 (139)
+..+++|+.|++.+|.+.. .+ .+..+++|+.+++++|.+... ..+..+++|+++++++|.+... ..+..+++|+
T Consensus 86 l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~ 159 (291)
T 1h6t_A 86 LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLD 159 (291)
T ss_dssp GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCS
T ss_pred cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCC
Confidence 3344444444444444431 21 234444444444444444221 2334444444444444444433 2344445555
Q ss_pred EEecCCCcccccCchhhhccCCCCeEEccCcccccccCccccCcCCC
Q 040935 92 YLNLSNNQFIQKIPIELEKLIPLSELDLNYNFLDVEIPFQICNMKSL 138 (139)
Q Consensus 92 ~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~p~~~~~~~~L 138 (139)
.|++.+|.+++..+ +..+++|+.|++++|.++ .+|. +..+++|
T Consensus 160 ~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~-~l~~-l~~l~~L 202 (291)
T 1h6t_A 160 TLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS-DLRA-LAGLKNL 202 (291)
T ss_dssp EEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-BCGG-GTTCTTC
T ss_pred EEEccCCccccchh--hcCCCccCEEECCCCcCC-CChh-hccCCCC
Confidence 55555555533222 455555555555555554 3332 4444443
No 87
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.67 E-value=5.2e-17 Score=107.70 Aligned_cols=130 Identities=20% Similarity=0.166 Sum_probs=82.2
Q ss_pred CCccccCCccccCC-----CCccEEEccCCcceeechhhhccccccceeEeeccccccC--cCccc--cCCCCccEEEcc
Q 040935 2 NNIPRSIPLEIGDL-----SKLQVLDLSSNHIVGEIRVQLGKLFSLNKLILNMNQLYGG--MPLKL--DSLTKLQYLDLS 72 (139)
Q Consensus 2 n~~~~~~~~~~~~l-----~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~--~~~~~--~~~~~L~~l~l~ 72 (139)
|.+.+. |..+..+ ++|++|++++|.+.+..+..+..+++|+.+++++|.+.+. .+..+ +.+++|++++++
T Consensus 131 N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~ 209 (312)
T 1wwl_A 131 VSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALR 209 (312)
T ss_dssp CBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECT
T ss_pred CCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECC
Confidence 445554 5555554 7777777777777766666777777777777777775432 22233 666777777777
Q ss_pred CCccccc---chHhhhccccccEEecCCCcccccCc-hhhhccCCCCeEEccCcccccccCcccc
Q 040935 73 ANKLWSL---ILENIDNLLKLCYLNLSNNQFIQKIP-IELEKLIPLSELDLNYNFLDVEIPFQIC 133 (139)
Q Consensus 73 ~n~~~~~---~~~~~~~~~~L~~l~l~~n~~~~~~~-~~~~~~~~L~~l~l~~n~l~~~~p~~~~ 133 (139)
+|.++.. ....+..+++|+.|++.+|.+++..+ ..+..+++|++|++++|.++ .+|..+.
T Consensus 210 ~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~ 273 (312)
T 1wwl_A 210 NAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP 273 (312)
T ss_dssp TSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC
T ss_pred CCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc
Confidence 7777632 22334456777777777777766543 23445567777777777776 6665544
No 88
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.67 E-value=6e-17 Score=113.28 Aligned_cols=120 Identities=22% Similarity=0.123 Sum_probs=67.6
Q ss_pred CCCccEEEccCCcceeechhhhccccccceeEeeccccccCcCcccc-CCCCccEEEccCCcccccchHhhhccccccEE
Q 040935 15 LSKLQVLDLSSNHIVGEIRVQLGKLFSLNKLILNMNQLYGGMPLKLD-SLTKLQYLDLSANKLWSLILENIDNLLKLCYL 93 (139)
Q Consensus 15 l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~-~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l 93 (139)
+++|+.|++.+|.+++..|..+..+++|+.|++++|.+.+..|..+. .+++|+++++++|.+++..+ ...+++|+.|
T Consensus 119 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~--~~~l~~L~~L 196 (487)
T 3oja_A 119 GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG--QVVFAKLKTL 196 (487)
T ss_dssp CSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC--CCCCTTCCEE
T ss_pred cCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccccc--cccCCCCCEE
Confidence 45566666666666655555555566666666666666555555543 45666666666666654422 2235566666
Q ss_pred ecCCCcccccCchhhhccCCCCeEEccCcccccccCccccCcCCC
Q 040935 94 NLSNNQFIQKIPIELEKLIPLSELDLNYNFLDVEIPFQICNMKSL 138 (139)
Q Consensus 94 ~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~p~~~~~~~~L 138 (139)
++.+|.+++..+ .+..+++|+.|++++|.++ .+|..++.+++|
T Consensus 197 ~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~-~lp~~l~~l~~L 239 (487)
T 3oja_A 197 DLSSNKLAFMGP-EFQSAAGVTWISLRNNKLV-LIEKALRFSQNL 239 (487)
T ss_dssp ECCSSCCCEECG-GGGGGTTCSEEECTTSCCC-EECTTCCCCTTC
T ss_pred ECCCCCCCCCCH-hHcCCCCccEEEecCCcCc-ccchhhccCCCC
Confidence 666666654333 3555666666666666665 355555555444
No 89
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.67 E-value=6.1e-17 Score=107.58 Aligned_cols=119 Identities=21% Similarity=0.116 Sum_probs=53.7
Q ss_pred CCccEEEccCCcceeechhhhccccccceeEeeccccccCcCccc-cCCCCccEEEccCCcccccchHhhhccccccEEe
Q 040935 16 SKLQVLDLSSNHIVGEIRVQLGKLFSLNKLILNMNQLYGGMPLKL-DSLTKLQYLDLSANKLWSLILENIDNLLKLCYLN 94 (139)
Q Consensus 16 ~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~-~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~ 94 (139)
++|+.|++.+|.++...+..+..+++|+.+++++|.+....+..+ ..+++|+++++++|.++.... ...+++|+.|+
T Consensus 120 ~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~--~~~l~~L~~L~ 197 (317)
T 3o53_A 120 QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG--QVVFAKLKTLD 197 (317)
T ss_dssp SSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC--CCCCTTCCEEE
T ss_pred CCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccccc--ccccccCCEEE
Confidence 445555555555543333344445555555555555443333333 234445555555554443311 11244455555
Q ss_pred cCCCcccccCchhhhccCCCCeEEccCcccccccCccccCcCCC
Q 040935 95 LSNNQFIQKIPIELEKLIPLSELDLNYNFLDVEIPFQICNMKSL 138 (139)
Q Consensus 95 l~~n~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~p~~~~~~~~L 138 (139)
+.+|.+++. +..+..+++|+.|++++|.++ .+|..+..+++|
T Consensus 198 Ls~N~l~~l-~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L 239 (317)
T 3o53_A 198 LSSNKLAFM-GPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNL 239 (317)
T ss_dssp CCSSCCCEE-CGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTC
T ss_pred CCCCcCCcc-hhhhcccCcccEEECcCCccc-chhhHhhcCCCC
Confidence 555544332 223444445555555555544 344444444433
No 90
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.67 E-value=1e-15 Score=102.53 Aligned_cols=120 Identities=25% Similarity=0.353 Sum_probs=94.4
Q ss_pred ccCCCCccEEEccCCcceeechhhhccccccceeEeeccccccCcCccccCCCCccEEEccCCcccccchHhhhcccccc
Q 040935 12 IGDLSKLQVLDLSSNHIVGEIRVQLGKLFSLNKLILNMNQLYGGMPLKLDSLTKLQYLDLSANKLWSLILENIDNLLKLC 91 (139)
Q Consensus 12 ~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~ 91 (139)
+..+++|+.|++.+|.++. .+. +..+++|+.+++++|.+... ..+..+++|+++++++|.+... ..+..+++|+
T Consensus 217 ~~~~~~L~~L~l~~n~l~~-~~~-~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~ 290 (347)
T 4fmz_A 217 VANMTRLNSLKIGNNKITD-LSP-LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLN 290 (347)
T ss_dssp GGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCS
T ss_pred hhcCCcCCEEEccCCccCC-Ccc-hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCC
Confidence 6677888888888888874 333 77888888888888887543 4577888899999998888765 3477788999
Q ss_pred EEecCCCcccccCchhhhccCCCCeEEccCcccccccCccccCcCCCC
Q 040935 92 YLNLSNNQFIQKIPIELEKLIPLSELDLNYNFLDVEIPFQICNMKSLE 139 (139)
Q Consensus 92 ~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~p~~~~~~~~L~ 139 (139)
.+++.+|.+++..+..++.+++|+.|++++|.+++..| ++.+++|+
T Consensus 291 ~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~ 336 (347)
T 4fmz_A 291 SLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMD 336 (347)
T ss_dssp EEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCS
T ss_pred EEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccc
Confidence 99999999887777788889999999999999885544 66666653
No 91
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.67 E-value=9.7e-16 Score=93.87 Aligned_cols=120 Identities=28% Similarity=0.212 Sum_probs=100.0
Q ss_pred CccEEEccCCcceeechhhhccccccceeEeeccccccCcCccccCCCCccEEEccCCcccccchHhhhccccccEEecC
Q 040935 17 KLQVLDLSSNHIVGEIRVQLGKLFSLNKLILNMNQLYGGMPLKLDSLTKLQYLDLSANKLWSLILENIDNLLKLCYLNLS 96 (139)
Q Consensus 17 ~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~ 96 (139)
..+.+++.++++. ..|..+ .+.++.+++++|.+....+..++.+++|+++++++|.++...+..+..+++|+.|++.
T Consensus 8 ~~~~l~~~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 84 (177)
T 2o6r_A 8 SGTEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLH 84 (177)
T ss_dssp ETTEEECCSSCCS-SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEEecCCCCc-cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECC
Confidence 3567889999887 455433 3689999999999977767778899999999999999998887878899999999999
Q ss_pred CCcccccCchhhhccCCCCeEEccCcccccccCccccCcCCCC
Q 040935 97 NNQFIQKIPIELEKLIPLSELDLNYNFLDVEIPFQICNMKSLE 139 (139)
Q Consensus 97 ~n~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~p~~~~~~~~L~ 139 (139)
+|.+++..+..+..+++|+.|++++|.+++..+..+..+++|+
T Consensus 85 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~ 127 (177)
T 2o6r_A 85 ENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQ 127 (177)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCC
T ss_pred CCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccC
Confidence 9999877766788999999999999999855444567777764
No 92
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.66 E-value=2.9e-16 Score=109.80 Aligned_cols=133 Identities=27% Similarity=0.230 Sum_probs=106.3
Q ss_pred CCCccccCCccccCCCCccEEEccCCcceeechhhhc-cccccceeEeeccccccCcCccccCCCCccEEEccCCccccc
Q 040935 1 MNNIPRSIPLEIGDLSKLQVLDLSSNHIVGEIRVQLG-KLFSLNKLILNMNQLYGGMPLKLDSLTKLQYLDLSANKLWSL 79 (139)
Q Consensus 1 ~n~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~-~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~ 79 (139)
+|.+.+..|..+..+++|+.|++++|.+++..|..+. .+++|+.|++++|.+.+. + ....+++|+++++++|.+++.
T Consensus 129 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~~ 206 (487)
T 3oja_A 129 NNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLAFM 206 (487)
T ss_dssp SSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCCCEE
T ss_pred CCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc-c-ccccCCCCCEEECCCCCCCCC
Confidence 3667777777888899999999999999877777775 688999999999988655 2 234588899999999999877
Q ss_pred chHhhhccccccEEecCCCcccccCchhhhccCCCCeEEccCcccc-cccCccccCcCC
Q 040935 80 ILENIDNLLKLCYLNLSNNQFIQKIPIELEKLIPLSELDLNYNFLD-VEIPFQICNMKS 137 (139)
Q Consensus 80 ~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~l~-~~~p~~~~~~~~ 137 (139)
.+. +..+++|+.|++.+|.+++ +|..+..+++|+.+++++|.+. +.+|..+..++.
T Consensus 207 ~~~-~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~ 263 (487)
T 3oja_A 207 GPE-FQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQR 263 (487)
T ss_dssp CGG-GGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHH
T ss_pred CHh-HcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCC
Confidence 665 7788999999999999865 5667888889999999999886 666666666543
No 93
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.66 E-value=4.9e-16 Score=114.76 Aligned_cols=128 Identities=29% Similarity=0.281 Sum_probs=108.7
Q ss_pred CccccCCCCccEEEccCCcceeechhhhccccccceeEeeccccccCcCcc--ccCCCCccEEEccCCcccccch-Hhhh
Q 040935 9 PLEIGDLSKLQVLDLSSNHIVGEIRVQLGKLFSLNKLILNMNQLYGGMPLK--LDSLTKLQYLDLSANKLWSLIL-ENID 85 (139)
Q Consensus 9 ~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~--~~~~~~L~~l~l~~n~~~~~~~-~~~~ 85 (139)
|.++.++++|++|++++|.+....|..|..+++|+.|++++|.+....+.. ++.+++|+++++++|.+....+ ..++
T Consensus 66 ~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~ 145 (844)
T 3j0a_A 66 KEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFG 145 (844)
T ss_dssp TTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGG
T ss_pred HHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHh
Confidence 778999999999999999999888999999999999999999997655544 8899999999999999987654 5688
Q ss_pred ccccccEEecCCCcccccCchhhhcc--CCCCeEEccCcccccccCccccCcC
Q 040935 86 NLLKLCYLNLSNNQFIQKIPIELEKL--IPLSELDLNYNFLDVEIPFQICNMK 136 (139)
Q Consensus 86 ~~~~L~~l~l~~n~~~~~~~~~~~~~--~~L~~l~l~~n~l~~~~p~~~~~~~ 136 (139)
.+++|+.|++.+|.+++..+..+..+ ++|+.|++++|.+.+..|..++.+.
T Consensus 146 ~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~ 198 (844)
T 3j0a_A 146 KLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCM 198 (844)
T ss_dssp TCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSS
T ss_pred hCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcC
Confidence 99999999999999988777777766 7888888888888777776666544
No 94
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.66 E-value=4.4e-16 Score=103.45 Aligned_cols=133 Identities=27% Similarity=0.240 Sum_probs=107.2
Q ss_pred CCccccCCccccCCCCccEEEccCCcceeechhhh-ccccccceeEeeccccccCcCccccCCCCccEEEccCCcccccc
Q 040935 2 NNIPRSIPLEIGDLSKLQVLDLSSNHIVGEIRVQL-GKLFSLNKLILNMNQLYGGMPLKLDSLTKLQYLDLSANKLWSLI 80 (139)
Q Consensus 2 n~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~-~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~ 80 (139)
|.+.+..+..+..+++|++|++++|.+....+..+ ..+++|+.+++++|.+... + ....+++|+++++++|.++...
T Consensus 130 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~l~ 207 (317)
T 3o53_A 130 NKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLAFMG 207 (317)
T ss_dssp SCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCCCEEC
T ss_pred CCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-c-cccccccCCEEECCCCcCCcch
Confidence 56666667788889999999999999987666666 4688999999999998554 3 2335889999999999998776
Q ss_pred hHhhhccccccEEecCCCcccccCchhhhccCCCCeEEccCcccc-cccCccccCcCCC
Q 040935 81 LENIDNLLKLCYLNLSNNQFIQKIPIELEKLIPLSELDLNYNFLD-VEIPFQICNMKSL 138 (139)
Q Consensus 81 ~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~l~-~~~p~~~~~~~~L 138 (139)
+. +..+++|+.+++.+|.+++ +|..+..+++|+.+++++|.+. +.+|..+..++.|
T Consensus 208 ~~-~~~l~~L~~L~L~~N~l~~-l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L 264 (317)
T 3o53_A 208 PE-FQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRV 264 (317)
T ss_dssp GG-GGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHH
T ss_pred hh-hcccCcccEEECcCCcccc-hhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccc
Confidence 55 7888999999999999964 5667888899999999999987 6777766666543
No 95
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.65 E-value=3.4e-15 Score=98.17 Aligned_cols=119 Identities=26% Similarity=0.309 Sum_probs=98.3
Q ss_pred cccCCCCccEEEccCCcceeechhhhccccccceeEeeccccccCcCccccCCCCccEEEccCCcccccchHhhhccccc
Q 040935 11 EIGDLSKLQVLDLSSNHIVGEIRVQLGKLFSLNKLILNMNQLYGGMPLKLDSLTKLQYLDLSANKLWSLILENIDNLLKL 90 (139)
Q Consensus 11 ~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L 90 (139)
.+..+++|+.|++++|.+++..+ +..+++|+.+++++|.+.. .+ .+..+++|+++++++|.+... ..+..+++|
T Consensus 63 ~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L 136 (291)
T 1h6t_A 63 GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQL 136 (291)
T ss_dssp TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEECTTSCCCCC--GGGGGCTTC
T ss_pred hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCEEECCCCcCCCC--hhhcCCCCC
Confidence 47788999999999999985443 8889999999999999854 33 478899999999999999775 457788999
Q ss_pred cEEecCCCcccccCchhhhccCCCCeEEccCcccccccCccccCcCCCC
Q 040935 91 CYLNLSNNQFIQKIPIELEKLIPLSELDLNYNFLDVEIPFQICNMKSLE 139 (139)
Q Consensus 91 ~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~p~~~~~~~~L~ 139 (139)
+.|++.+|.+++. ..+..+++|+.|++++|.+++. +. +..+++|+
T Consensus 137 ~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~-~~-l~~l~~L~ 181 (291)
T 1h6t_A 137 ESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDI-VP-LAGLTKLQ 181 (291)
T ss_dssp CEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCC-GG-GTTCTTCC
T ss_pred CEEEccCCcCCcc--hhhccCCCCCEEEccCCccccc-hh-hcCCCccC
Confidence 9999999999654 5788999999999999999854 44 77777764
No 96
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.65 E-value=2.6e-15 Score=99.46 Aligned_cols=17 Identities=29% Similarity=0.325 Sum_probs=6.8
Q ss_pred hccCCCCeEEccCcccc
Q 040935 109 EKLIPLSELDLNYNFLD 125 (139)
Q Consensus 109 ~~~~~L~~l~l~~n~l~ 125 (139)
..+++|+.|++++|.++
T Consensus 192 ~~l~~L~~L~L~~N~l~ 208 (308)
T 1h6u_A 192 ASLPNLIEVHLKNNQIS 208 (308)
T ss_dssp GGCTTCCEEECTTSCCC
T ss_pred cCCCCCCEEEccCCccC
Confidence 33334444444444443
No 97
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.65 E-value=9.6e-16 Score=93.46 Aligned_cols=106 Identities=27% Similarity=0.245 Sum_probs=77.8
Q ss_pred CccEEEccCCcceeechhhhccccccceeEeeccccccCcCccccCCCCccEEEccCCcccccchHhhhccccccEEecC
Q 040935 17 KLQVLDLSSNHIVGEIRVQLGKLFSLNKLILNMNQLYGGMPLKLDSLTKLQYLDLSANKLWSLILENIDNLLKLCYLNLS 96 (139)
Q Consensus 17 ~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~ 96 (139)
..+.++++++.++ ..|..+ ...++.+++++|.+....+..|..+++|+++++++|+++...+..+..+++|+.|++.
T Consensus 10 ~~~~l~~s~n~l~-~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 10 SGTTVDCSGKSLA-SVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp ETTEEECTTSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEEeCCCCcC-ccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence 3467777777776 455443 2567778888888866667777777888888888888877766667777888888888
Q ss_pred CCcccccCchhhhccCCCCeEEccCcccc
Q 040935 97 NNQFIQKIPIELEKLIPLSELDLNYNFLD 125 (139)
Q Consensus 97 ~n~~~~~~~~~~~~~~~L~~l~l~~n~l~ 125 (139)
+|.+++..+..+..+++|+.|++++|++.
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CCccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 88876655556777788888888888765
No 98
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.65 E-value=3.5e-15 Score=98.81 Aligned_cols=117 Identities=26% Similarity=0.369 Sum_probs=80.8
Q ss_pred ccCCCCccEEEccCCcceeechhhhccccccceeEeeccccccCcCccccCCCCccEEEccCCcccccchHhhhcccccc
Q 040935 12 IGDLSKLQVLDLSSNHIVGEIRVQLGKLFSLNKLILNMNQLYGGMPLKLDSLTKLQYLDLSANKLWSLILENIDNLLKLC 91 (139)
Q Consensus 12 ~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~ 91 (139)
+..+++|++|++++|.+.. .+ .+..+++|+.+++++|.+... + .+..+++|+++++++|.+....+ +..+++|+
T Consensus 81 ~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~ 154 (308)
T 1h6u_A 81 LKNLTKITELELSGNPLKN-VS-AIAGLQSIKTLDLTSTQITDV-T-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQ 154 (308)
T ss_dssp GTTCCSCCEEECCSCCCSC-CG-GGTTCTTCCEEECTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCC
T ss_pred HccCCCCCEEEccCCcCCC-ch-hhcCCCCCCEEECCCCCCCCc-h-hhcCCCCCCEEECCCCccCcCcc--ccCCCCcc
Confidence 6777788888888887763 33 567777788888888877443 3 26777778888888877766543 66777788
Q ss_pred EEecCCCcccccCchhhhccCCCCeEEccCcccccccCccccCcCCC
Q 040935 92 YLNLSNNQFIQKIPIELEKLIPLSELDLNYNFLDVEIPFQICNMKSL 138 (139)
Q Consensus 92 ~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~p~~~~~~~~L 138 (139)
.|++.+|.+++. +. +..+++|+.|++++|.++ .++. +..+++|
T Consensus 155 ~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~-~~~~-l~~l~~L 197 (308)
T 1h6u_A 155 YLSIGNAQVSDL-TP-LANLSKLTTLKADDNKIS-DISP-LASLPNL 197 (308)
T ss_dssp EEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCC-CCGG-GGGCTTC
T ss_pred EEEccCCcCCCC-hh-hcCCCCCCEEECCCCccC-cChh-hcCCCCC
Confidence 888887777543 32 677777888888888776 3333 5555554
No 99
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.64 E-value=8.5e-16 Score=94.06 Aligned_cols=105 Identities=24% Similarity=0.261 Sum_probs=81.8
Q ss_pred ccEEEccCCcceeechhhhccccccceeEeeccccccCcCccccCCCCccEEEccCCcccccchHhhhccccccEEecCC
Q 040935 18 LQVLDLSSNHIVGEIRVQLGKLFSLNKLILNMNQLYGGMPLKLDSLTKLQYLDLSANKLWSLILENIDNLLKLCYLNLSN 97 (139)
Q Consensus 18 L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~ 97 (139)
-+.+++.++++. .+|..+. ..++.|++++|.+....|..|+.+++|+++++++|+++...+..+..+++|+.|++.+
T Consensus 14 ~~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 14 QTLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SSEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CcEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence 467788888876 5555443 6788888888888777777888888888888888888877777677888888888888
Q ss_pred CcccccCchhhhccCCCCeEEccCcccc
Q 040935 98 NQFIQKIPIELEKLIPLSELDLNYNFLD 125 (139)
Q Consensus 98 n~~~~~~~~~~~~~~~L~~l~l~~n~l~ 125 (139)
|.+++..+..+..+++|+.|++++|++.
T Consensus 91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 91 NHLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp SCCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred CccceeCHHHhccccCCCEEEeCCCCcc
Confidence 8886655555788888888888888776
No 100
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.64 E-value=1.7e-15 Score=107.41 Aligned_cols=108 Identities=26% Similarity=0.193 Sum_probs=78.7
Q ss_pred CCccEEEccCCcceeechhhhccccccceeEeeccccccCcCccccCCCCccEEEccCCcccccchHhhhccccccEEec
Q 040935 16 SKLQVLDLSSNHIVGEIRVQLGKLFSLNKLILNMNQLYGGMPLKLDSLTKLQYLDLSANKLWSLILENIDNLLKLCYLNL 95 (139)
Q Consensus 16 ~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l 95 (139)
+.++.|++++|.+.+..+..|..+++|+.|++++|.+....|..|+.+++|+++++++|.++..... .+++|++|++
T Consensus 52 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~---~l~~L~~L~L 128 (562)
T 3a79_B 52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCC---PMASLRHLDL 128 (562)
T ss_dssp TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCEECSC---CCTTCSEEEC
T ss_pred CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCccCcc---ccccCCEEEC
Confidence 6777778888777766666777777788888888777666677777777788888877777654333 6677777888
Q ss_pred CCCccccc-CchhhhccCCCCeEEccCccccc
Q 040935 96 SNNQFIQK-IPIELEKLIPLSELDLNYNFLDV 126 (139)
Q Consensus 96 ~~n~~~~~-~~~~~~~~~~L~~l~l~~n~l~~ 126 (139)
.+|.+++. .|..++.+++|++|++++|.+.+
T Consensus 129 s~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~ 160 (562)
T 3a79_B 129 SFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ 160 (562)
T ss_dssp CSSCCSBCCCCGGGGGCTTCCEEEEECSBCCT
T ss_pred CCCCccccCchHhhcccCcccEEecCCCcccc
Confidence 77777653 34667777777777777777763
No 101
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.64 E-value=4.6e-18 Score=106.05 Aligned_cols=124 Identities=27% Similarity=0.216 Sum_probs=103.9
Q ss_pred cccCCCCccEEEccCCcceeechhhhccccccceeEeeccccccCcCccccCCCCccEEEccCCcccccchHhhhccccc
Q 040935 11 EIGDLSKLQVLDLSSNHIVGEIRVQLGKLFSLNKLILNMNQLYGGMPLKLDSLTKLQYLDLSANKLWSLILENIDNLLKL 90 (139)
Q Consensus 11 ~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L 90 (139)
.+..++.|++|++++|.+.. .| .+..+++|+.+++++|.+. ..|..+..+++|+++++++|.+... + .+..+++|
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~l-~-~~~~l~~L 117 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIASL-S-GIEKLVNL 117 (198)
T ss_dssp HHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCCH-H-HHHHHHHS
T ss_pred HHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCcC-C-ccccCCCC
Confidence 78899999999999999985 66 8889999999999999995 5677777788999999999999875 3 57888999
Q ss_pred cEEecCCCcccccCc-hhhhccCCCCeEEccCcccccccCcc----------ccCcCCCC
Q 040935 91 CYLNLSNNQFIQKIP-IELEKLIPLSELDLNYNFLDVEIPFQ----------ICNMKSLE 139 (139)
Q Consensus 91 ~~l~l~~n~~~~~~~-~~~~~~~~L~~l~l~~n~l~~~~p~~----------~~~~~~L~ 139 (139)
+.+++.+|.+++..+ ..+..+++|+.+++++|.+.+.+|.. +..+++|+
T Consensus 118 ~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~ 177 (198)
T 1ds9_A 118 RVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLK 177 (198)
T ss_dssp SEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCS
T ss_pred CEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcE
Confidence 999999999965332 46889999999999999998766543 66666653
No 102
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.64 E-value=2.1e-15 Score=107.23 Aligned_cols=108 Identities=30% Similarity=0.280 Sum_probs=96.8
Q ss_pred CccEEEccCCcceeechhhhccccccceeEeeccccccCcCccccCCCCccEEEccCCcccccchHhhhccccccEEecC
Q 040935 17 KLQVLDLSSNHIVGEIRVQLGKLFSLNKLILNMNQLYGGMPLKLDSLTKLQYLDLSANKLWSLILENIDNLLKLCYLNLS 96 (139)
Q Consensus 17 ~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~ 96 (139)
.|+.|++++|.+++ +|. +..+++|+.|++++|.+. .+|..++.+++|+.|++++|.++.. | .++.+++|+.|++.
T Consensus 442 ~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~l-p-~l~~l~~L~~L~Ls 516 (567)
T 1dce_A 442 DVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALENV-D-GVANLPRLQELLLC 516 (567)
T ss_dssp TCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCC-G-GGTTCSSCCEEECC
T ss_pred CceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCCC-c-ccCCCCCCcEEECC
Confidence 48899999999984 665 899999999999999995 7788999999999999999999875 4 68899999999999
Q ss_pred CCcccccC-chhhhccCCCCeEEccCcccccccC
Q 040935 97 NNQFIQKI-PIELEKLIPLSELDLNYNFLDVEIP 129 (139)
Q Consensus 97 ~n~~~~~~-~~~~~~~~~L~~l~l~~n~l~~~~p 129 (139)
+|.+++.. |..++.+++|+.|++++|.+++..|
T Consensus 517 ~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~ 550 (567)
T 1dce_A 517 NNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG 550 (567)
T ss_dssp SSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSS
T ss_pred CCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCcc
Confidence 99998776 8899999999999999999985433
No 103
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.64 E-value=6.4e-16 Score=102.35 Aligned_cols=119 Identities=19% Similarity=0.161 Sum_probs=67.6
Q ss_pred cCCCCccEEEccCCcceeechhhhccccccceeEeeccccccC--c--CccccCCCCccEEEccCCcccccchH---hhh
Q 040935 13 GDLSKLQVLDLSSNHIVGEIRVQLGKLFSLNKLILNMNQLYGG--M--PLKLDSLTKLQYLDLSANKLWSLILE---NID 85 (139)
Q Consensus 13 ~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~--~--~~~~~~~~~L~~l~l~~n~~~~~~~~---~~~ 85 (139)
..+++|++|++.+|.+....+..+..+++|+.|++++|.+.+. . +..++.+++|+++++++|.++..... .+.
T Consensus 142 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~ 221 (310)
T 4glp_A 142 WLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAA 221 (310)
T ss_dssp TBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHH
T ss_pred hhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHh
Confidence 3566666777777766655555666666677777766664321 1 12224556666666666666432221 234
Q ss_pred ccccccEEecCCCcccccCchhhhcc---CCCCeEEccCcccccccCccc
Q 040935 86 NLLKLCYLNLSNNQFIQKIPIELEKL---IPLSELDLNYNFLDVEIPFQI 132 (139)
Q Consensus 86 ~~~~L~~l~l~~n~~~~~~~~~~~~~---~~L~~l~l~~n~l~~~~p~~~ 132 (139)
.+++|++|++.+|.+++..|..+..+ ++|++|++++|.++ .+|..+
T Consensus 222 ~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~ 270 (310)
T 4glp_A 222 AGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGL 270 (310)
T ss_dssp HTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCC
T ss_pred cCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhh
Confidence 55666666666666655545444444 46666666666665 555544
No 104
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.63 E-value=9.7e-15 Score=94.74 Aligned_cols=118 Identities=27% Similarity=0.243 Sum_probs=79.7
Q ss_pred cccCCCCccEEEccCCcceeechhhhccccccceeEeeccccccCcCccccCCCCccEEEccCCcccccchHhhhccccc
Q 040935 11 EIGDLSKLQVLDLSSNHIVGEIRVQLGKLFSLNKLILNMNQLYGGMPLKLDSLTKLQYLDLSANKLWSLILENIDNLLKL 90 (139)
Q Consensus 11 ~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L 90 (139)
.+..+++|+.|++++|.+++ .+. +..+++|+.+++++|.+... +.. .. .+|+++++++|.++.. ..+..+++|
T Consensus 58 ~l~~l~~L~~L~L~~N~i~~-~~~-l~~l~~L~~L~L~~N~l~~l-~~~-~~-~~L~~L~L~~N~l~~~--~~l~~l~~L 130 (263)
T 1xeu_A 58 GMQFFTNLKELHLSHNQISD-LSP-LKDLTKLEELSVNRNRLKNL-NGI-PS-ACLSRLFLDNNELRDT--DSLIHLKNL 130 (263)
T ss_dssp TGGGCTTCCEEECCSSCCCC-CGG-GTTCSSCCEEECCSSCCSCC-TTC-CC-SSCCEEECCSSCCSBS--GGGTTCTTC
T ss_pred HHhhCCCCCEEECCCCccCC-Chh-hccCCCCCEEECCCCccCCc-Ccc-cc-CcccEEEccCCccCCC--hhhcCcccc
Confidence 56677777788888777774 333 77777778888877777443 322 22 6677777777777654 236677778
Q ss_pred cEEecCCCcccccCchhhhccCCCCeEEccCcccccccCccccCcCCCC
Q 040935 91 CYLNLSNNQFIQKIPIELEKLIPLSELDLNYNFLDVEIPFQICNMKSLE 139 (139)
Q Consensus 91 ~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~p~~~~~~~~L~ 139 (139)
+.|++.+|.+++. + .++.+++|+.|++++|.+++. ..+..+++|+
T Consensus 131 ~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~ 175 (263)
T 1xeu_A 131 EILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVN 175 (263)
T ss_dssp CEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCC
T ss_pred cEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--HHhccCCCCC
Confidence 8888888877553 3 567777888888888877743 5566666553
No 105
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.62 E-value=1.6e-16 Score=105.98 Aligned_cols=31 Identities=19% Similarity=0.226 Sum_probs=14.3
Q ss_pred hhccCCCCeEEccCcc-cccccCccccCcCCC
Q 040935 108 LEKLIPLSELDLNYNF-LDVEIPFQICNMKSL 138 (139)
Q Consensus 108 ~~~~~~L~~l~l~~n~-l~~~~p~~~~~~~~L 138 (139)
+..+++|+.|++++|. +++..+..++.+++|
T Consensus 218 ~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L 249 (336)
T 2ast_B 218 VRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYL 249 (336)
T ss_dssp HHHCTTCSEEECTTCTTCCGGGGGGGGGCTTC
T ss_pred HhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCC
Confidence 3444455555555554 443444444444443
No 106
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.61 E-value=5.7e-15 Score=105.63 Aligned_cols=107 Identities=28% Similarity=0.338 Sum_probs=49.1
Q ss_pred cccCCCCccEEEccCCcceeechhhhccccccceeEeeccccccCcCccccCCCCccEEEccCCcccccchHhhhccccc
Q 040935 11 EIGDLSKLQVLDLSSNHIVGEIRVQLGKLFSLNKLILNMNQLYGGMPLKLDSLTKLQYLDLSANKLWSLILENIDNLLKL 90 (139)
Q Consensus 11 ~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L 90 (139)
.+..+++|+.|++++|.+.+..+ +..+++|+.|++++|.+.. .+ .+..+++|++|++++|.+... ..+..+++|
T Consensus 60 ~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L 133 (605)
T 1m9s_A 60 GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-LS-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQL 133 (605)
T ss_dssp TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-CT-TSTTCTTCCEEECTTSCCCCC--GGGGGCTTC
T ss_pred HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-Ch-hhccCCCCCEEEecCCCCCCC--ccccCCCcc
Confidence 34555556666666655553222 4555555555555555532 12 344445555555555544432 123344444
Q ss_pred cEEecCCCcccccCchhhhccCCCCeEEccCcccc
Q 040935 91 CYLNLSNNQFIQKIPIELEKLIPLSELDLNYNFLD 125 (139)
Q Consensus 91 ~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~l~ 125 (139)
+.|++.+|.+++. ..+..+++|+.|++++|.+.
T Consensus 134 ~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~ 166 (605)
T 1m9s_A 134 ESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQIS 166 (605)
T ss_dssp SEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCC
T ss_pred CEEECCCCccCCc--hhhcccCCCCEEECcCCcCC
Confidence 4444444444322 23334444444444444443
No 107
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.61 E-value=1.1e-14 Score=101.24 Aligned_cols=117 Identities=30% Similarity=0.361 Sum_probs=56.8
Q ss_pred ccCCCCccEEEccCCcceeechhhhccccccceeEeeccccccCcCccccCCCCccEEEccCCcccccchHhhhcccccc
Q 040935 12 IGDLSKLQVLDLSSNHIVGEIRVQLGKLFSLNKLILNMNQLYGGMPLKLDSLTKLQYLDLSANKLWSLILENIDNLLKLC 91 (139)
Q Consensus 12 ~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~ 91 (139)
+..+++|+.|++.+|.+.+..+ +..+++|+.+++++|.+....+ ++.+++|+.+++++|.+.+..+ +..+++|+
T Consensus 261 ~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~ 334 (466)
T 1o6v_A 261 LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQ 334 (466)
T ss_dssp GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCC
T ss_pred hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCC
Confidence 3444455555555554442222 4445555555555555433222 4445555555555555544333 34455555
Q ss_pred EEecCCCcccccCchhhhccCCCCeEEccCcccccccCccccCcCCC
Q 040935 92 YLNLSNNQFIQKIPIELEKLIPLSELDLNYNFLDVEIPFQICNMKSL 138 (139)
Q Consensus 92 ~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~p~~~~~~~~L 138 (139)
.+++.+|.+++. ..+..+++|+.|++++|.+++..| ++.+++|
T Consensus 335 ~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L 377 (466)
T 1o6v_A 335 RLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRI 377 (466)
T ss_dssp EEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTC
T ss_pred EeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCC
Confidence 555555555432 244555555555555555554433 4444444
No 108
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.60 E-value=1e-14 Score=97.75 Aligned_cols=120 Identities=27% Similarity=0.351 Sum_probs=85.8
Q ss_pred ccCCCCccEEEccCCcceeechhhhccccccceeEeeccccccCcCccccCCCCccEEEccCCcccccchHhhhcccccc
Q 040935 12 IGDLSKLQVLDLSSNHIVGEIRVQLGKLFSLNKLILNMNQLYGGMPLKLDSLTKLQYLDLSANKLWSLILENIDNLLKLC 91 (139)
Q Consensus 12 ~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~ 91 (139)
+..++.|+.+++.+|.+....+ +..+++|+.+++++|.+....+ +..+++|+++++++|.+... ..+..+++|+
T Consensus 195 ~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~ 268 (347)
T 4fmz_A 195 LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI--NAVKDLTKLK 268 (347)
T ss_dssp GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCC
T ss_pred ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC--hhHhcCCCcC
Confidence 4455555555555555553222 6667778888888887744433 67778888888888877664 3467788888
Q ss_pred EEecCCCcccccCchhhhccCCCCeEEccCcccccccCccccCcCCCC
Q 040935 92 YLNLSNNQFIQKIPIELEKLIPLSELDLNYNFLDVEIPFQICNMKSLE 139 (139)
Q Consensus 92 ~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~p~~~~~~~~L~ 139 (139)
.+++.+|.+++. ..+..+++|+.|++++|.+++..|..++.+++|+
T Consensus 269 ~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 314 (347)
T 4fmz_A 269 MLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLT 314 (347)
T ss_dssp EEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCS
T ss_pred EEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCC
Confidence 888888888653 3578888999999999988877777788777764
No 109
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.60 E-value=3.3e-15 Score=91.47 Aligned_cols=119 Identities=25% Similarity=0.227 Sum_probs=96.8
Q ss_pred CCccccCCccccCCC-CccEEEccCCcceeechhhhccccccceeEeeccccccCcCccccCCCCccEEEccCCcccccc
Q 040935 2 NNIPRSIPLEIGDLS-KLQVLDLSSNHIVGEIRVQLGKLFSLNKLILNMNQLYGGMPLKLDSLTKLQYLDLSANKLWSLI 80 (139)
Q Consensus 2 n~~~~~~~~~~~~l~-~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~ 80 (139)
|.+.. ++. +..+. +|+.|++++|.+++. ..+..+++|+.+++++|.+....+..+..+++|+++++++|.+....
T Consensus 29 n~l~~-i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~ 104 (176)
T 1a9n_A 29 YKIPV-IEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELG 104 (176)
T ss_dssp SCCCS-CCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCCCGG
T ss_pred CCCch-hHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCCcch
Confidence 45553 343 44544 999999999999854 57889999999999999997655555689999999999999997654
Q ss_pred h-HhhhccccccEEecCCCcccccCch----hhhccCCCCeEEccCcccc
Q 040935 81 L-ENIDNLLKLCYLNLSNNQFIQKIPI----ELEKLIPLSELDLNYNFLD 125 (139)
Q Consensus 81 ~-~~~~~~~~L~~l~l~~n~~~~~~~~----~~~~~~~L~~l~l~~n~l~ 125 (139)
. ..+..+++|+.+++.+|.++.. +. .++.+++|+.+++++|...
T Consensus 105 ~~~~l~~l~~L~~L~l~~N~i~~~-~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 105 DLDPLASLKSLTYLCILRNPVTNK-KHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp GGGGGGGCTTCCEEECCSSGGGGS-TTHHHHHHHHCTTCSEETTEECCHH
T ss_pred hhHhhhcCCCCCEEEecCCCCCCc-HhHHHHHHHHCCccceeCCCcCCHH
Confidence 3 3688899999999999999654 44 4899999999999999764
No 110
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.60 E-value=1.7e-14 Score=103.20 Aligned_cols=126 Identities=29% Similarity=0.386 Sum_probs=105.0
Q ss_pred CCccccCCccccCCCCccEEEccCCcceeechhhhccccccceeEeeccccccCcCccccCCCCccEEEccCCcccccch
Q 040935 2 NNIPRSIPLEIGDLSKLQVLDLSSNHIVGEIRVQLGKLFSLNKLILNMNQLYGGMPLKLDSLTKLQYLDLSANKLWSLIL 81 (139)
Q Consensus 2 n~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~ 81 (139)
|.+.+..+ +..+++|+.|++.+|.+.. ++ .+..+++|+.|++++|.+... ..+..+++|+.|++++|.+...
T Consensus 75 N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l-- 146 (605)
T 1m9s_A 75 NKLTDIKP--LTNLKNLGWLFLDENKIKD-LS-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI-- 146 (605)
T ss_dssp SCCCCCGG--GGGCTTCCEEECCSSCCCC-CT-TSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--
T ss_pred CCCCCChh--hccCCCCCEEECcCCCCCC-Ch-hhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--
Confidence 44554433 7899999999999999974 44 688999999999999999653 4578899999999999999876
Q ss_pred HhhhccccccEEecCCCcccccCchhhhccCCCCeEEccCcccccccCccccCcCCCC
Q 040935 82 ENIDNLLKLCYLNLSNNQFIQKIPIELEKLIPLSELDLNYNFLDVEIPFQICNMKSLE 139 (139)
Q Consensus 82 ~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~p~~~~~~~~L~ 139 (139)
..+..+++|+.|++.+|.+++..+ +..+++|+.|++++|.++ .+| .+..+++|+
T Consensus 147 ~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~-~l~-~l~~l~~L~ 200 (605)
T 1m9s_A 147 TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS-DLR-ALAGLKNLD 200 (605)
T ss_dssp GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-BCG-GGTTCTTCS
T ss_pred hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCC-CCh-HHccCCCCC
Confidence 568889999999999999976555 889999999999999998 444 578887764
No 111
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.60 E-value=5.9e-15 Score=95.78 Aligned_cols=118 Identities=29% Similarity=0.292 Sum_probs=98.6
Q ss_pred cccCCCCccEEEccCCcceeechhhhccccccceeEeeccccccCcCccccCCCCccEEEccCCcccccchHhhhccccc
Q 040935 11 EIGDLSKLQVLDLSSNHIVGEIRVQLGKLFSLNKLILNMNQLYGGMPLKLDSLTKLQYLDLSANKLWSLILENIDNLLKL 90 (139)
Q Consensus 11 ~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L 90 (139)
.+..++.|+.|++.+|.+. ..+ .+..+++|+.+++++|.+....+ +..+++|+++++++|.++.... +.. ++|
T Consensus 36 ~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~l~~l~~--~~~-~~L 108 (263)
T 1xeu_A 36 SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKNLNG--IPS-ACL 108 (263)
T ss_dssp CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSCCSCCTT--CCC-SSC
T ss_pred chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCCccCCcCc--ccc-Ccc
Confidence 4678899999999999998 455 68899999999999999965544 8899999999999999987543 223 899
Q ss_pred cEEecCCCcccccCchhhhccCCCCeEEccCcccccccCccccCcCCCC
Q 040935 91 CYLNLSNNQFIQKIPIELEKLIPLSELDLNYNFLDVEIPFQICNMKSLE 139 (139)
Q Consensus 91 ~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~p~~~~~~~~L~ 139 (139)
+.|++.+|.+++. ..+..+++|+.|++++|.++ .++ .++.+++|+
T Consensus 109 ~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~-~~~-~l~~l~~L~ 153 (263)
T 1xeu_A 109 SRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLK-SIV-MLGFLSKLE 153 (263)
T ss_dssp CEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCC-BCG-GGGGCTTCC
T ss_pred cEEEccCCccCCC--hhhcCcccccEEECCCCcCC-CCh-HHccCCCCC
Confidence 9999999999663 35889999999999999998 454 677777764
No 112
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.59 E-value=7.2e-16 Score=102.87 Aligned_cols=136 Identities=19% Similarity=0.182 Sum_probs=108.6
Q ss_pred CccccCCccccCCCCccEEEccCCcceee-chhhhccccccceeEeeccccccCcCccccCCCCccEEEccCC-ccccc-
Q 040935 3 NIPRSIPLEIGDLSKLQVLDLSSNHIVGE-IRVQLGKLFSLNKLILNMNQLYGGMPLKLDSLTKLQYLDLSAN-KLWSL- 79 (139)
Q Consensus 3 ~~~~~~~~~~~~l~~L~~l~l~~~~~~~~-~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n-~~~~~- 79 (139)
.+.+..+. +..+++|++|++++|.+.+. .+..+..+++|+.+++++|.+....+..++.+++|+++++++| .+++.
T Consensus 81 ~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~ 159 (336)
T 2ast_B 81 FMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFA 159 (336)
T ss_dssp EECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHH
T ss_pred cccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHH
Confidence 34444443 56789999999999998755 7778889999999999999987777888888999999999999 67653
Q ss_pred chHhhhccccccEEecCCC-ccccc-CchhhhccC-CCCeEEccCc--ccc-cccCccccCcCCCC
Q 040935 80 ILENIDNLLKLCYLNLSNN-QFIQK-IPIELEKLI-PLSELDLNYN--FLD-VEIPFQICNMKSLE 139 (139)
Q Consensus 80 ~~~~~~~~~~L~~l~l~~n-~~~~~-~~~~~~~~~-~L~~l~l~~n--~l~-~~~p~~~~~~~~L~ 139 (139)
.+..+..+++|+.|++.+| .+++. ++..+..++ +|++|++++| .++ +.+|..+..+++|+
T Consensus 160 l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~ 225 (336)
T 2ast_B 160 LQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLV 225 (336)
T ss_dssp HHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCS
T ss_pred HHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCC
Confidence 4556778999999999999 88654 566788899 9999999999 454 46666666676663
No 113
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.57 E-value=2.9e-15 Score=101.12 Aligned_cols=124 Identities=21% Similarity=0.155 Sum_probs=60.1
Q ss_pred CCccccCCccccCCCCccEEEccCCcceeech----hhhcccc-ccceeEeeccccccCcCccccCC-----CCccEEEc
Q 040935 2 NNIPRSIPLEIGDLSKLQVLDLSSNHIVGEIR----VQLGKLF-SLNKLILNMNQLYGGMPLKLDSL-----TKLQYLDL 71 (139)
Q Consensus 2 n~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~----~~~~~l~-~L~~l~l~~~~~~~~~~~~~~~~-----~~L~~l~l 71 (139)
|.+.+.+|..+....+|++|++++|.+++..+ ..+..++ +|+.+++++|.+....+..+..+ ++|+++++
T Consensus 8 n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~L 87 (362)
T 3goz_A 8 HPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNL 87 (362)
T ss_dssp CTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEEC
T ss_pred ccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEEC
Confidence 34444444444444446666666665554443 4445555 56666666665544444444332 55555555
Q ss_pred cCCcccccchHhhhc----c-ccccEEecCCCcccccCchhhhc-----cCCCCeEEccCcccc
Q 040935 72 SANKLWSLILENIDN----L-LKLCYLNLSNNQFIQKIPIELEK-----LIPLSELDLNYNFLD 125 (139)
Q Consensus 72 ~~n~~~~~~~~~~~~----~-~~L~~l~l~~n~~~~~~~~~~~~-----~~~L~~l~l~~n~l~ 125 (139)
++|.++...+..+.. . ++|+.|++.+|.+++..+..+.. .++|++|++++|.++
T Consensus 88 s~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~ 151 (362)
T 3goz_A 88 SGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLG 151 (362)
T ss_dssp CSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGG
T ss_pred cCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCC
Confidence 555555444432222 2 45555555555554433332222 134555555555444
No 114
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.56 E-value=6e-14 Score=97.55 Aligned_cols=117 Identities=32% Similarity=0.388 Sum_probs=65.1
Q ss_pred ccCCCCccEEEccCCcceeechhhhccccccceeEeeccccccCcCccccCCCCccEEEccCCcccccchHhhhcccccc
Q 040935 12 IGDLSKLQVLDLSSNHIVGEIRVQLGKLFSLNKLILNMNQLYGGMPLKLDSLTKLQYLDLSANKLWSLILENIDNLLKLC 91 (139)
Q Consensus 12 ~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~ 91 (139)
+..+++|+.|++.+|.+.+..+ +..+++|+.+++++|.+....+ +..+++|+.+++++|.+.+..+ +..+++|+
T Consensus 239 l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~ 312 (466)
T 1o6v_A 239 LASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLT 312 (466)
T ss_dssp GGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCS
T ss_pred hhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCC
Confidence 4445555555555555543222 4555555555555555533322 4555666666666666654433 45566666
Q ss_pred EEecCCCcccccCchhhhccCCCCeEEccCcccccccCccccCcCCC
Q 040935 92 YLNLSNNQFIQKIPIELEKLIPLSELDLNYNFLDVEIPFQICNMKSL 138 (139)
Q Consensus 92 ~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~p~~~~~~~~L 138 (139)
.|++.+|.+++..+ +..+++|+.|++++|.+++. +.++.+++|
T Consensus 313 ~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L 355 (466)
T 1o6v_A 313 YLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNI 355 (466)
T ss_dssp EEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTC
T ss_pred EEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCC
Confidence 66666666654433 56666777777777766632 345555555
No 115
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.55 E-value=1e-14 Score=106.27 Aligned_cols=105 Identities=23% Similarity=0.250 Sum_probs=88.7
Q ss_pred echhhhccccccceeEeeccccccCcCccccCCCCccEEEccCCcccccchHhhhccccccEEecCCCcccccCchhhhc
Q 040935 31 EIRVQLGKLFSLNKLILNMNQLYGGMPLKLDSLTKLQYLDLSANKLWSLILENIDNLLKLCYLNLSNNQFIQKIPIELEK 110 (139)
Q Consensus 31 ~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~ 110 (139)
..+..+..+..|+.|++++|.+. .+|..+..+++|++|++++|.++ ..|..+..+++|+.|++.+|.++ .+|..++.
T Consensus 215 ~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~ 291 (727)
T 4b8c_D 215 MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGS 291 (727)
T ss_dssp -------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGG
T ss_pred cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcC
Confidence 45677888999999999999995 66777778999999999999998 45677899999999999999997 67888999
Q ss_pred cCCCCeEEccCcccccccCccccCcCCCC
Q 040935 111 LIPLSELDLNYNFLDVEIPFQICNMKSLE 139 (139)
Q Consensus 111 ~~~L~~l~l~~n~l~~~~p~~~~~~~~L~ 139 (139)
+++|+.|++++|.++ .+|.+|+.+++|+
T Consensus 292 l~~L~~L~L~~N~l~-~lp~~~~~l~~L~ 319 (727)
T 4b8c_D 292 CFQLKYFYFFDNMVT-TLPWEFGNLCNLQ 319 (727)
T ss_dssp GTTCSEEECCSSCCC-CCCSSTTSCTTCC
T ss_pred CCCCCEEECCCCCCC-ccChhhhcCCCcc
Confidence 999999999999998 8999999998875
No 116
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.54 E-value=4.4e-14 Score=86.10 Aligned_cols=95 Identities=33% Similarity=0.270 Sum_probs=84.2
Q ss_pred CCccccCCCCccEEEccCCcceeechhhhccccccceeEeeccccccCcCccccCCCCccEEEccCCcccccchHhhhcc
Q 040935 8 IPLEIGDLSKLQVLDLSSNHIVGEIRVQLGKLFSLNKLILNMNQLYGGMPLKLDSLTKLQYLDLSANKLWSLILENIDNL 87 (139)
Q Consensus 8 ~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~ 87 (139)
+|..+ ...+++|++++|.+++..+..|..+++|+.|++++|.+....+..|..+++|+++++++|.++...+..+..+
T Consensus 24 ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l 101 (170)
T 3g39_A 24 VPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNL 101 (170)
T ss_dssp CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred cCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCC
Confidence 45444 3789999999999997778889999999999999999987777788999999999999999998888889999
Q ss_pred ccccEEecCCCcccccC
Q 040935 88 LKLCYLNLSNNQFIQKI 104 (139)
Q Consensus 88 ~~L~~l~l~~n~~~~~~ 104 (139)
++|+.+++.+|+++...
T Consensus 102 ~~L~~L~L~~N~~~c~c 118 (170)
T 3g39_A 102 KSLTHIWLLNNPWDCAC 118 (170)
T ss_dssp TTCCEEECCSSCBCTTB
T ss_pred CCCCEEEeCCCCCCCCc
Confidence 99999999999986543
No 117
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.54 E-value=5.1e-14 Score=100.12 Aligned_cols=113 Identities=26% Similarity=0.261 Sum_probs=97.7
Q ss_pred CCccccCCccccCCCCccEEEccCCcceeechhhhccccccceeEeeccccccCcCccccCCCCccEEEccCCcccccc-
Q 040935 2 NNIPRSIPLEIGDLSKLQVLDLSSNHIVGEIRVQLGKLFSLNKLILNMNQLYGGMPLKLDSLTKLQYLDLSANKLWSLI- 80 (139)
Q Consensus 2 n~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~- 80 (139)
|.+.+ +|. +..+++|+.|++++|.++ .+|..+..+++|+.|++++|.+++ +| .++.+++|++|++++|.++...
T Consensus 451 n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~ 525 (567)
T 1dce_A 451 KDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAA 525 (567)
T ss_dssp SCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSST
T ss_pred CCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCC
Confidence 55665 565 899999999999999998 788899999999999999999965 56 8899999999999999999886
Q ss_pred hHhhhccccccEEecCCCcccccCch---hhhccCCCCeEEc
Q 040935 81 LENIDNLLKLCYLNLSNNQFIQKIPI---ELEKLIPLSELDL 119 (139)
Q Consensus 81 ~~~~~~~~~L~~l~l~~n~~~~~~~~---~~~~~~~L~~l~l 119 (139)
|..+..+++|+.|++.+|.+++..+. .+..+++|+.|++
T Consensus 526 p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 526 IQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp TGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred cHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 88899999999999999999876543 3455788988864
No 118
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.51 E-value=1e-14 Score=98.44 Aligned_cols=119 Identities=21% Similarity=0.144 Sum_probs=63.8
Q ss_pred ccccCCC-CccEEEccCCcceeechhhhccc-----cccceeEeeccccccCcCccc----cCC-CCccEEEccCCcccc
Q 040935 10 LEIGDLS-KLQVLDLSSNHIVGEIRVQLGKL-----FSLNKLILNMNQLYGGMPLKL----DSL-TKLQYLDLSANKLWS 78 (139)
Q Consensus 10 ~~~~~l~-~L~~l~l~~~~~~~~~~~~~~~l-----~~L~~l~l~~~~~~~~~~~~~----~~~-~~L~~l~l~~n~~~~ 78 (139)
.++..++ .|++|++++|.+.+..+..+..+ ++|+.+++++|.+....+..+ ..+ ++|+++++++|.++.
T Consensus 44 ~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~ 123 (362)
T 3goz_A 44 QAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSS 123 (362)
T ss_dssp HHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGG
T ss_pred HHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCc
Confidence 4555566 67777777776665555555443 666677777666654444322 223 566666666666655
Q ss_pred cchHhhhc-----cccccEEecCCCcccccCch----hhhccC-CCCeEEccCccccccc
Q 040935 79 LILENIDN-----LLKLCYLNLSNNQFIQKIPI----ELEKLI-PLSELDLNYNFLDVEI 128 (139)
Q Consensus 79 ~~~~~~~~-----~~~L~~l~l~~n~~~~~~~~----~~~~~~-~L~~l~l~~n~l~~~~ 128 (139)
.....+.. ..+|+.|++.+|.+++.... .+...+ +|++|++++|.+++..
T Consensus 124 ~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~ 183 (362)
T 3goz_A 124 KSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKN 183 (362)
T ss_dssp SCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSC
T ss_pred HHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhh
Confidence 54433322 13566666666655432222 223333 5555555555554333
No 119
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.51 E-value=5.2e-15 Score=100.61 Aligned_cols=126 Identities=21% Similarity=0.141 Sum_probs=58.1
Q ss_pred cCCCCccEEEccCCccee----echhhhccccccceeEeeccccccCcCcccc----CC---------CCccEEEccCCc
Q 040935 13 GDLSKLQVLDLSSNHIVG----EIRVQLGKLFSLNKLILNMNQLYGGMPLKLD----SL---------TKLQYLDLSANK 75 (139)
Q Consensus 13 ~~l~~L~~l~l~~~~~~~----~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~----~~---------~~L~~l~l~~n~ 75 (139)
..+++|++|++++|.+.. .++..+..+++|+.|++++|.+....+..+. .+ ++|+++++++|.
T Consensus 91 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~ 170 (386)
T 2ca6_A 91 LKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR 170 (386)
T ss_dssp TTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC
T ss_pred hhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCC
Confidence 455555555555555543 2444455555555555555555322222221 12 455555555555
Q ss_pred cccc-ch---HhhhccccccEEecCCCcccc-----cCchhhhccCCCCeEEccCcccc----cccCccccCcCCC
Q 040935 76 LWSL-IL---ENIDNLLKLCYLNLSNNQFIQ-----KIPIELEKLIPLSELDLNYNFLD----VEIPFQICNMKSL 138 (139)
Q Consensus 76 ~~~~-~~---~~~~~~~~L~~l~l~~n~~~~-----~~~~~~~~~~~L~~l~l~~n~l~----~~~p~~~~~~~~L 138 (139)
+... .+ ..+..+++|+.|++.+|.++. ..+..+..+++|+.|++++|.++ ..+|..+..+++|
T Consensus 171 l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L 246 (386)
T 2ca6_A 171 LENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNL 246 (386)
T ss_dssp CTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTC
T ss_pred CCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCc
Confidence 5421 11 233344455555555555431 11113444555555555555553 3444444444443
No 120
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.50 E-value=1.7e-13 Score=83.80 Aligned_cols=96 Identities=32% Similarity=0.307 Sum_probs=83.8
Q ss_pred ccCCccccCCCCccEEEccCCcceeechhhhccccccceeEeeccccccCcCccccCCCCccEEEccCCcccccchHhhh
Q 040935 6 RSIPLEIGDLSKLQVLDLSSNHIVGEIRVQLGKLFSLNKLILNMNQLYGGMPLKLDSLTKLQYLDLSANKLWSLILENID 85 (139)
Q Consensus 6 ~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~ 85 (139)
..+|..+. ..++.|++.+|.+++..|..|..+++|+.|++++|.+....+..|..+++|+++++++|.+....+..+.
T Consensus 25 ~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~ 102 (174)
T 2r9u_A 25 ASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFD 102 (174)
T ss_dssp SSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred CccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhc
Confidence 34555443 7899999999999977788999999999999999999776666788999999999999999988777799
Q ss_pred ccccccEEecCCCccccc
Q 040935 86 NLLKLCYLNLSNNQFIQK 103 (139)
Q Consensus 86 ~~~~L~~l~l~~n~~~~~ 103 (139)
.+++|+.+++.+|++...
T Consensus 103 ~l~~L~~L~L~~N~~~c~ 120 (174)
T 2r9u_A 103 NLKSLTHIYLYNNPWDCE 120 (174)
T ss_dssp TCTTCSEEECCSSCBCTT
T ss_pred cccCCCEEEeCCCCcccc
Confidence 999999999999998644
No 121
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.49 E-value=1.2e-13 Score=92.67 Aligned_cols=88 Identities=26% Similarity=0.199 Sum_probs=44.2
Q ss_pred ccCCCCccEEEccC-CcceeechhhhccccccceeEeeccccccCcCccccCCCCccEEEccCCcccccchHhhhccccc
Q 040935 12 IGDLSKLQVLDLSS-NHIVGEIRVQLGKLFSLNKLILNMNQLYGGMPLKLDSLTKLQYLDLSANKLWSLILENIDNLLKL 90 (139)
Q Consensus 12 ~~~l~~L~~l~l~~-~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L 90 (139)
+..+.+|+.|++++ |.+....+..|..+++|+.|++++|.+++..|..|..+++|++|+|++|.+....+..+..+. |
T Consensus 27 l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L 105 (347)
T 2ifg_A 27 LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-L 105 (347)
T ss_dssp SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-C
T ss_pred CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-c
Confidence 44555555555553 555544444455555555555555555444444555555555555555555544444333333 5
Q ss_pred cEEecCCCcc
Q 040935 91 CYLNLSNNQF 100 (139)
Q Consensus 91 ~~l~l~~n~~ 100 (139)
+.|++.+|.+
T Consensus 106 ~~l~l~~N~~ 115 (347)
T 2ifg_A 106 QELVLSGNPL 115 (347)
T ss_dssp CEEECCSSCC
T ss_pred eEEEeeCCCc
Confidence 5555555544
No 122
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.48 E-value=6.1e-15 Score=100.24 Aligned_cols=68 Identities=25% Similarity=0.301 Sum_probs=31.0
Q ss_pred cccCCCCccEEEccCCccc----ccchHhhhccccccEEecCCCccccc----Cchhhhc--cCCCCeEEccCccccc
Q 040935 59 KLDSLTKLQYLDLSANKLW----SLILENIDNLLKLCYLNLSNNQFIQK----IPIELEK--LIPLSELDLNYNFLDV 126 (139)
Q Consensus 59 ~~~~~~~L~~l~l~~n~~~----~~~~~~~~~~~~L~~l~l~~n~~~~~----~~~~~~~--~~~L~~l~l~~n~l~~ 126 (139)
.+..+++|+++++++|.++ ...+..+..+++|+.|++.+|.+++. ++..+.. +++|+.|++++|.+++
T Consensus 211 ~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~ 288 (386)
T 2ca6_A 211 GLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIEL 288 (386)
T ss_dssp TGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBH
T ss_pred HhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCH
Confidence 3344444555555555443 22233344445555555555554432 2223322 4555555555555553
No 123
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.45 E-value=4.1e-13 Score=93.29 Aligned_cols=104 Identities=31% Similarity=0.362 Sum_probs=55.2
Q ss_pred cccCCCCccEEEccCCcceeechhhhccccccceeEeeccccccCcCccccCCCCccEEEccCCcccccchHhhhccccc
Q 040935 11 EIGDLSKLQVLDLSSNHIVGEIRVQLGKLFSLNKLILNMNQLYGGMPLKLDSLTKLQYLDLSANKLWSLILENIDNLLKL 90 (139)
Q Consensus 11 ~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L 90 (139)
.+..++.|++|+++++.+++ .| .+..+++|+.+++++|.+.+. + ++.+++|+++++++|.+++.. ++.+++|
T Consensus 37 ~~~~l~~L~~L~Ls~n~l~~-~~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~~---~~~l~~L 108 (457)
T 3bz5_A 37 SEEQLATLTSLDCHNSSITD-MT-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNLD---VTPLTKL 108 (457)
T ss_dssp EHHHHTTCCEEECCSSCCCC-CT-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCCC---CTTCTTC
T ss_pred ChhHcCCCCEEEccCCCccc-Ch-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCceee---cCCCCcC
Confidence 44455556666666665553 23 355555566666666555332 2 455555555555555555431 4455555
Q ss_pred cEEecCCCcccccCchhhhccCCCCeEEccCcccc
Q 040935 91 CYLNLSNNQFIQKIPIELEKLIPLSELDLNYNFLD 125 (139)
Q Consensus 91 ~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~l~ 125 (139)
++|++.+|.+++ ++ ++.+++|+.|++++|.++
T Consensus 109 ~~L~L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~ 140 (457)
T 3bz5_A 109 TYLNCDTNKLTK-LD--VSQNPLLTYLNCARNTLT 140 (457)
T ss_dssp CEEECCSSCCSC-CC--CTTCTTCCEEECTTSCCS
T ss_pred CEEECCCCcCCe-ec--CCCCCcCCEEECCCCccc
Confidence 555555555543 22 455555555555555554
No 124
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.45 E-value=1.7e-13 Score=97.42 Aligned_cols=109 Identities=25% Similarity=0.239 Sum_probs=66.4
Q ss_pred CCCCccEEEccCCcceeechhhhccccccceeEeeccccccCcCccccCCCCccEEEccCCcccccchHhhhccccc---
Q 040935 14 DLSKLQVLDLSSNHIVGEIRVQLGKLFSLNKLILNMNQLYGGMPLKLDSLTKLQYLDLSANKLWSLILENIDNLLKL--- 90 (139)
Q Consensus 14 ~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L--- 90 (139)
.+++|+.|++++|.++. +|. .+++|+.|++++|.++. +|. +. ++|+.+++++|.++..+. +.. +|
T Consensus 138 ~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~~lp~--~~~--~L~~~ 205 (571)
T 3cvr_A 138 LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLESLPA--VPV--RNHHS 205 (571)
T ss_dssp CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCSSCCC--CC--------
T ss_pred cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCCchhh--HHH--hhhcc
Confidence 45556666666666653 333 34566666666666643 444 43 667777777777664433 322 55
Q ss_pred ----cEEecCCCcccccCchhhhccCCCCeEEccCcccccccCccccCc
Q 040935 91 ----CYLNLSNNQFIQKIPIELEKLIPLSELDLNYNFLDVEIPFQICNM 135 (139)
Q Consensus 91 ----~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~p~~~~~~ 135 (139)
+.|++.+|.++ .+|..+..+++|+.|++++|.+++.+|..++.+
T Consensus 206 ~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l 253 (571)
T 3cvr_A 206 EETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQ 253 (571)
T ss_dssp --CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHH
T ss_pred cccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHh
Confidence 77777777775 456666667777777777777777777665544
No 125
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.45 E-value=4.1e-13 Score=90.03 Aligned_cols=104 Identities=22% Similarity=0.140 Sum_probs=90.3
Q ss_pred cEEEccCC-cceeechhhhccccccceeEeec-cccccCcCccccCCCCccEEEccCCcccccchHhhhccccccEEecC
Q 040935 19 QVLDLSSN-HIVGEIRVQLGKLFSLNKLILNM-NQLYGGMPLKLDSLTKLQYLDLSANKLWSLILENIDNLLKLCYLNLS 96 (139)
Q Consensus 19 ~~l~l~~~-~~~~~~~~~~~~l~~L~~l~l~~-~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~ 96 (139)
..++..++ +++ .+|. +..+.+|+.|++++ |.+....+..|+.+.+|++|++++|.+++..+..|..+++|+.|++.
T Consensus 11 ~~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 11 SGLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp SCEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred CEEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence 45688887 887 5777 99999999999996 99977777889999999999999999999999999999999999999
Q ss_pred CCcccccCchhhhccCCCCeEEccCcccc
Q 040935 97 NNQFIQKIPIELEKLIPLSELDLNYNFLD 125 (139)
Q Consensus 97 ~n~~~~~~~~~~~~~~~L~~l~l~~n~l~ 125 (139)
+|.+++..+..+..++ |+.|++.+|.+.
T Consensus 89 ~N~l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 89 FNALESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp SSCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred CCccceeCHHHcccCC-ceEEEeeCCCcc
Confidence 9999765555555554 999999999886
No 126
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.44 E-value=1.2e-12 Score=91.05 Aligned_cols=107 Identities=31% Similarity=0.354 Sum_probs=66.5
Q ss_pred CCccccCCccccCCCCccEEEccCCcceeechhhhccccccceeEeeccccccCcCccccCCCCccEEEccCCcccccch
Q 040935 2 NNIPRSIPLEIGDLSKLQVLDLSSNHIVGEIRVQLGKLFSLNKLILNMNQLYGGMPLKLDSLTKLQYLDLSANKLWSLIL 81 (139)
Q Consensus 2 n~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~ 81 (139)
|.+.+. | .+..+++|++|++++|.+++ .+ +..+++|+.+++++|.+.+. + ++.+++|+++++++|.+....
T Consensus 52 n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~-~~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~L~~N~l~~l~- 122 (457)
T 3bz5_A 52 SSITDM-T-GIEKLTGLTKLICTSNNITT-LD--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLNCDTNKLTKLD- 122 (457)
T ss_dssp SCCCCC-T-TGGGCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEECCSSCCSCCC-
T ss_pred CCcccC-h-hhcccCCCCEEEccCCcCCe-Ec--cccCCCCCEEECcCCCCcee-e--cCCCCcCCEEECCCCcCCeec-
Confidence 344443 3 56777788888888887764 33 66777777777777777543 2 666777777777777776542
Q ss_pred HhhhccccccEEecCCCcccccCchhhhccCCCCeEEccCc
Q 040935 82 ENIDNLLKLCYLNLSNNQFIQKIPIELEKLIPLSELDLNYN 122 (139)
Q Consensus 82 ~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n 122 (139)
+..+++|+.+++.+|.+++. + ++.+++|+.+++++|
T Consensus 123 --~~~l~~L~~L~l~~N~l~~l-~--l~~l~~L~~L~l~~n 158 (457)
T 3bz5_A 123 --VSQNPLLTYLNCARNTLTEI-D--VSHNTQLTELDCHLN 158 (457)
T ss_dssp --CTTCTTCCEEECTTSCCSCC-C--CTTCTTCCEEECTTC
T ss_pred --CCCCCcCCEEECCCCcccee-c--cccCCcCCEEECCCC
Confidence 55666777777777766542 1 333444444444444
No 127
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.43 E-value=7e-13 Score=94.29 Aligned_cols=105 Identities=23% Similarity=0.197 Sum_probs=58.6
Q ss_pred CccEEEccCCcceeechhhhccccccceeEeeccccccCcCccccCCCCccEEEccCCcccccchHhhhccccccEEecC
Q 040935 17 KLQVLDLSSNHIVGEIRVQLGKLFSLNKLILNMNQLYGGMPLKLDSLTKLQYLDLSANKLWSLILENIDNLLKLCYLNLS 96 (139)
Q Consensus 17 ~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~ 96 (139)
+|+.|++.+|.+++ +|. .+++|+.|++++|.++. +|. .+++|+.+++++|.++.... +. ++|+.|++.
T Consensus 121 ~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~lp~--l~--~~L~~L~Ls 188 (571)
T 3cvr_A 121 SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTFLPE--LP--ESLEALDVS 188 (571)
T ss_dssp TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSCCCC--CC--TTCCEEECC
T ss_pred CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCCcch--hh--CCCCEEECc
Confidence 45555555555442 332 34455555555555533 332 34556666666666655332 33 667777777
Q ss_pred CCcccccCchhhhccCCC-------CeEEccCcccccccCccccCcCCC
Q 040935 97 NNQFIQKIPIELEKLIPL-------SELDLNYNFLDVEIPFQICNMKSL 138 (139)
Q Consensus 97 ~n~~~~~~~~~~~~~~~L-------~~l~l~~n~l~~~~p~~~~~~~~L 138 (139)
+|.++ .+|. +.. +| +.|++++|.++ .+|..++.+++|
T Consensus 189 ~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L 232 (571)
T 3cvr_A 189 TNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPT 232 (571)
T ss_dssp SSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTT
T ss_pred CCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCC
Confidence 77765 3443 332 55 77778877777 677777767665
No 128
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.43 E-value=4.2e-13 Score=90.26 Aligned_cols=76 Identities=21% Similarity=0.242 Sum_probs=33.6
Q ss_pred CCccccCCccccCCCCccEEEccCCcceeec-hhhhccccccce-eEeeccccccCcCccccCCCCccEEEccCCccc
Q 040935 2 NNIPRSIPLEIGDLSKLQVLDLSSNHIVGEI-RVQLGKLFSLNK-LILNMNQLYGGMPLKLDSLTKLQYLDLSANKLW 77 (139)
Q Consensus 2 n~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~-~~~~~~l~~L~~-l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~ 77 (139)
|.+....+.+|.++++|++|++++|.+.+.. +..|..++++.. +.+..|.+....+..|+.+++|+++++.+|.+.
T Consensus 40 N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~ 117 (350)
T 4ay9_X 40 TKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIK 117 (350)
T ss_dssp CCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCS
T ss_pred CcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccccccccccc
Confidence 3344333344555555555555555443222 223444444332 333344444444444455555555555555443
No 129
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.42 E-value=2.1e-14 Score=99.42 Aligned_cols=86 Identities=22% Similarity=0.149 Sum_probs=44.9
Q ss_pred ccceeEeeccccccC----cCccccCCCCccEEEccCCcccccchHhhhc-----cccccEEecCCCcccc----cCchh
Q 040935 41 SLNKLILNMNQLYGG----MPLKLDSLTKLQYLDLSANKLWSLILENIDN-----LLKLCYLNLSNNQFIQ----KIPIE 107 (139)
Q Consensus 41 ~L~~l~l~~~~~~~~----~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~-----~~~L~~l~l~~n~~~~----~~~~~ 107 (139)
+|+.+++++|.++.. .+..+..+++|+++++++|.+.+..+..+.. .+.|+.|++.+|.+++ .++..
T Consensus 314 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~ 393 (461)
T 1z7x_W 314 QLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAAT 393 (461)
T ss_dssp CCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHH
T ss_pred cceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHH
Confidence 444444444444322 2233344456666666666655443333321 3466666666666654 44555
Q ss_pred hhccCCCCeEEccCccccc
Q 040935 108 LEKLIPLSELDLNYNFLDV 126 (139)
Q Consensus 108 ~~~~~~L~~l~l~~n~l~~ 126 (139)
+..+++|+.|++++|.+++
T Consensus 394 l~~~~~L~~L~l~~N~i~~ 412 (461)
T 1z7x_W 394 LLANHSLRELDLSNNCLGD 412 (461)
T ss_dssp HHHCCCCCEEECCSSSCCH
T ss_pred HHhCCCccEEECCCCCCCH
Confidence 5566666666666666653
No 130
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.41 E-value=6.5e-13 Score=89.33 Aligned_cols=128 Identities=20% Similarity=0.094 Sum_probs=70.1
Q ss_pred CccccCCCCccEEEccCCcceeechhhhccccccceeEeec-cccccCcCccccCCC-CccEEEccCCcccccchHhhhc
Q 040935 9 PLEIGDLSKLQVLDLSSNHIVGEIRVQLGKLFSLNKLILNM-NQLYGGMPLKLDSLT-KLQYLDLSANKLWSLILENIDN 86 (139)
Q Consensus 9 ~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~-~~~~~~~~~~~~~~~-~L~~l~l~~n~~~~~~~~~~~~ 86 (139)
|..+..+++|+++++.+|.+....+..+.....+..+++.+ +.+....+..|..+. .++.+++++|+++.+.+..+ .
T Consensus 97 ~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f-~ 175 (350)
T 4ay9_X 97 PEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAF-N 175 (350)
T ss_dssp TTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSS-T
T ss_pred chhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhc-c
Confidence 33444444444444444444322222223333333333322 223222223344443 46778888888876655544 3
Q ss_pred cccccEEecCC-CcccccCchhhhccCCCCeEEccCcccccccCc-cccCcCCC
Q 040935 87 LLKLCYLNLSN-NQFIQKIPIELEKLIPLSELDLNYNFLDVEIPF-QICNMKSL 138 (139)
Q Consensus 87 ~~~L~~l~l~~-n~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~p~-~~~~~~~L 138 (139)
..+++.+++.+ |.++...+..+..+++|+.|++++|.++ .+|. .+.++++|
T Consensus 176 ~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~-~lp~~~~~~L~~L 228 (350)
T 4ay9_X 176 GTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH-SLPSYGLENLKKL 228 (350)
T ss_dssp TEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCC-CCCSSSCTTCCEE
T ss_pred ccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcC-ccChhhhccchHh
Confidence 46788888865 5553333345788999999999999998 5554 45555544
No 131
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.36 E-value=5.6e-12 Score=84.10 Aligned_cols=99 Identities=12% Similarity=-0.085 Sum_probs=79.3
Q ss_pred ccccceeEeeccccccCcCccccCCCCccEEEccCCcccccchHhhhcccccc-EEecCCCcccccCchhhhccCCCCeE
Q 040935 39 LFSLNKLILNMNQLYGGMPLKLDSLTKLQYLDLSANKLWSLILENIDNLLKLC-YLNLSNNQFIQKIPIELEKLIPLSEL 117 (139)
Q Consensus 39 l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~-~l~l~~n~~~~~~~~~~~~~~~L~~l 117 (139)
+++|+.+++.+|.+....+.+|..+.+|+.+++.+| +.......|.++.+|+ .+.+.. .++...+..+..+++|+.+
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l 302 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV 302 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence 567888888888786666778888888999988887 7777778888888898 888887 5555556678889999999
Q ss_pred EccCcccccccCccccCcCCCC
Q 040935 118 DLNYNFLDVEIPFQICNMKSLE 139 (139)
Q Consensus 118 ~l~~n~l~~~~p~~~~~~~~L~ 139 (139)
++.+|.+....+..|.+|++|+
T Consensus 303 ~l~~n~i~~I~~~aF~~~~~L~ 324 (329)
T 3sb4_A 303 LATGDKITTLGDELFGNGVPSK 324 (329)
T ss_dssp EECSSCCCEECTTTTCTTCCCC
T ss_pred EeCCCccCccchhhhcCCcchh
Confidence 9988888856666888888875
No 132
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.36 E-value=5.8e-15 Score=91.97 Aligned_cols=120 Identities=21% Similarity=0.230 Sum_probs=93.5
Q ss_pred CCCCccEEEccCCcceeech------hhhccccccceeEeeccccccCcCccccCCCCccEEEccCCcccccchHhhhcc
Q 040935 14 DLSKLQVLDLSSNHIVGEIR------VQLGKLFSLNKLILNMNQLYGGMPLKLDSLTKLQYLDLSANKLWSLILENIDNL 87 (139)
Q Consensus 14 ~l~~L~~l~l~~~~~~~~~~------~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~ 87 (139)
....++.+++..+.+.+..| ..+..+++|+.+++++|.+.. .| .++.+++|+++++++|.+... +..+..+
T Consensus 16 ~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~~l-~~~~~~~ 92 (198)
T 1ds9_A 16 ERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIKKI-ENLDAVA 92 (198)
T ss_dssp HTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEECSC-SSHHHHH
T ss_pred hcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcccc-cchhhcC
Confidence 34445555555555554444 388999999999999999965 56 888899999999999999854 4556777
Q ss_pred ccccEEecCCCcccccCchhhhccCCCCeEEccCcccccccC--ccccCcCCCC
Q 040935 88 LKLCYLNLSNNQFIQKIPIELEKLIPLSELDLNYNFLDVEIP--FQICNMKSLE 139 (139)
Q Consensus 88 ~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~p--~~~~~~~~L~ 139 (139)
++|+.|++.+|.+++ ++ .+..+++|+.|++++|.++ .++ ..+..+++|+
T Consensus 93 ~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~-~~~~~~~l~~l~~L~ 143 (198)
T 1ds9_A 93 DTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKIT-NWGEIDKLAALDKLE 143 (198)
T ss_dssp HHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECC-CHHHHHHHTTTTTCS
T ss_pred CcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCC-chhHHHHHhcCCCCC
Confidence 999999999999965 44 6888999999999999998 434 3677777764
No 133
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.36 E-value=5e-12 Score=87.80 Aligned_cols=107 Identities=27% Similarity=0.289 Sum_probs=56.1
Q ss_pred cccCCCCccEEEccCCcceeechhhhccccccceeEeeccccccCcCccccCCCCccEEEccCCcccccchHhhhccccc
Q 040935 11 EIGDLSKLQVLDLSSNHIVGEIRVQLGKLFSLNKLILNMNQLYGGMPLKLDSLTKLQYLDLSANKLWSLILENIDNLLKL 90 (139)
Q Consensus 11 ~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L 90 (139)
.+..+++|++|++.+|.+++ .|.. ..+|+.+++++|.+.+ .| .++.+++|+++++++|.+.+... ..++|
T Consensus 148 ~~~~l~~L~~L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~l~~----~~~~L 217 (454)
T 1jl5_A 148 ELQNSSFLKIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKKLPD----LPLSL 217 (454)
T ss_dssp CCTTCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSSCCC----CCTTC
T ss_pred ccCCCCCCCEEECCCCcCcc-cCCC---cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCcCCC----CcCcc
Confidence 35556666666666665552 3321 2355566666665533 33 35556666666666665544211 11355
Q ss_pred cEEecCCCcccccCchhhhccCCCCeEEccCcccccccCc
Q 040935 91 CYLNLSNNQFIQKIPIELEKLIPLSELDLNYNFLDVEIPF 130 (139)
Q Consensus 91 ~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~p~ 130 (139)
+.+++.+|.++ .+| .++.+++|+.|++++|.++ .+|.
T Consensus 218 ~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~-~l~~ 254 (454)
T 1jl5_A 218 ESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLK-TLPD 254 (454)
T ss_dssp CEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCS-SCCS
T ss_pred cEEECcCCcCC-ccc-ccCCCCCCCEEECCCCcCC-cccc
Confidence 55555555554 334 2555666666666666665 3443
No 134
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.34 E-value=2.4e-13 Score=94.11 Aligned_cols=74 Identities=19% Similarity=0.013 Sum_probs=37.3
Q ss_pred CccEEEccCCcccccc----hHhhhccccccEEecCCCcccccCchhhhc-----cCCCCeEEccCccccc----ccCcc
Q 040935 65 KLQYLDLSANKLWSLI----LENIDNLLKLCYLNLSNNQFIQKIPIELEK-----LIPLSELDLNYNFLDV----EIPFQ 131 (139)
Q Consensus 65 ~L~~l~l~~n~~~~~~----~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~-----~~~L~~l~l~~n~l~~----~~p~~ 131 (139)
+|+++++.+|.++... +..+...++|+.+++.+|.+++..+..+.. .++|+.|++++|.+++ .+|..
T Consensus 314 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~ 393 (461)
T 1z7x_W 314 QLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAAT 393 (461)
T ss_dssp CCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHH
T ss_pred cceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHH
Confidence 4555555555444332 222334456666666666554433333322 4466666666666654 45555
Q ss_pred ccCcCCC
Q 040935 132 ICNMKSL 138 (139)
Q Consensus 132 ~~~~~~L 138 (139)
+..+++|
T Consensus 394 l~~~~~L 400 (461)
T 1z7x_W 394 LLANHSL 400 (461)
T ss_dssp HHHCCCC
T ss_pred HHhCCCc
Confidence 5555544
No 135
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.34 E-value=1.9e-13 Score=94.87 Aligned_cols=33 Identities=9% Similarity=0.042 Sum_probs=11.4
Q ss_pred ccCCccccCCCCccEEEccCCcceeechhhhcc
Q 040935 6 RSIPLEIGDLSKLQVLDLSSNHIVGEIRVQLGK 38 (139)
Q Consensus 6 ~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~ 38 (139)
+.+|+++.+++.|++|++.+|.+.+..|..+..
T Consensus 24 ~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~ 56 (454)
T 1jl5_A 24 TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGE 56 (454)
T ss_dssp ----------CCHHHHHHHHHHHHHTSCTTSCC
T ss_pred hhCChhHhcccchhhhhccCCcccccCCccccc
Confidence 445555555555555555555554444444433
No 136
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.31 E-value=7.1e-12 Score=90.01 Aligned_cols=83 Identities=28% Similarity=0.293 Sum_probs=44.8
Q ss_pred ccceeEeeccccccCcCccccCCCCccEEEccCCcccccchHhhhccccccEEecCCCcccccCchhhhccCCCCeEEcc
Q 040935 41 SLNKLILNMNQLYGGMPLKLDSLTKLQYLDLSANKLWSLILENIDNLLKLCYLNLSNNQFIQKIPIELEKLIPLSELDLN 120 (139)
Q Consensus 41 ~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~ 120 (139)
+|+.+++++|.+.. +| ..+++|+.+++++|.++.... .+++|+.|++.+|.++ .+|..+..+++|+.|+++
T Consensus 222 ~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~~lp~----~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~ 292 (622)
T 3g06_A 222 GLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLTSLPM----LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLE 292 (622)
T ss_dssp TCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECC
T ss_pred CCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCCcCCc----ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEec
Confidence 44445555554422 22 233455555555555554322 3455666666666664 445556666666666666
Q ss_pred CcccccccCccc
Q 040935 121 YNFLDVEIPFQI 132 (139)
Q Consensus 121 ~n~l~~~~p~~~ 132 (139)
+|.+++..|..+
T Consensus 293 ~N~l~~~~~~~l 304 (622)
T 3g06_A 293 GNPLSERTLQAL 304 (622)
T ss_dssp SCCCCHHHHHHH
T ss_pred CCCCCCcCHHHH
Confidence 666665555443
No 137
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.25 E-value=5.1e-11 Score=85.64 Aligned_cols=101 Identities=25% Similarity=0.275 Sum_probs=55.3
Q ss_pred cCCccccCCCCccEEEccCCcceeechhhhccccccceeEeeccccccCcCccccCCCCccEEEccCCcccccchHhhhc
Q 040935 7 SIPLEIGDLSKLQVLDLSSNHIVGEIRVQLGKLFSLNKLILNMNQLYGGMPLKLDSLTKLQYLDLSANKLWSLILENIDN 86 (139)
Q Consensus 7 ~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~ 86 (139)
.+|..+. ++|+.|++.+|.++ .+|. .+++|+.|++++|.+. .+|. .+++|+++++++|.+..... .
T Consensus 54 ~lp~~l~--~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls~N~l~~l~~----~ 119 (622)
T 3g06_A 54 TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPV---LPPGLLELSIFSNPLTHLPA----L 119 (622)
T ss_dssp CCCSCCC--TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCS-CCCC---CCTTCCEEEECSCCCCCCCC----C
T ss_pred ccChhhC--CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEECcCCcCCCCCC----C
Confidence 3444443 67777777777776 3443 4567777777777764 3343 45666777777766655432 2
Q ss_pred cccccEEecCCCcccccCchhhhccCCCCeEEccCcccc
Q 040935 87 LLKLCYLNLSNNQFIQKIPIELEKLIPLSELDLNYNFLD 125 (139)
Q Consensus 87 ~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~l~ 125 (139)
+++|+.|++.+|.++. +|. .+++|++|++++|.++
T Consensus 120 l~~L~~L~L~~N~l~~-lp~---~l~~L~~L~Ls~N~l~ 154 (622)
T 3g06_A 120 PSGLCKLWIFGNQLTS-LPV---LPPGLQELSVSDNQLA 154 (622)
T ss_dssp CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCS
T ss_pred CCCcCEEECCCCCCCc-CCC---CCCCCCEEECcCCcCC
Confidence 3445555555554432 221 1244444444444444
No 138
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.16 E-value=1.2e-10 Score=77.58 Aligned_cols=74 Identities=15% Similarity=0.020 Sum_probs=42.1
Q ss_pred CCCccEEEccCCcccccchHhhhccccccEEecCCCcccccCchhhhccCCCC-eEEccCcccccccCccccCcCCC
Q 040935 63 LTKLQYLDLSANKLWSLILENIDNLLKLCYLNLSNNQFIQKIPIELEKLIPLS-ELDLNYNFLDVEIPFQICNMKSL 138 (139)
Q Consensus 63 ~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~-~l~l~~n~l~~~~p~~~~~~~~L 138 (139)
+++|+.+++.+|++.......|.++.+|+.+++..| ++......+..+++|+ .+++.+ .++..-+..|.+|++|
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L 299 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNL 299 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccC
Confidence 445666666666665555556666666666666665 4333344566666666 666655 4543434556555554
No 139
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.12 E-value=4.8e-12 Score=85.86 Aligned_cols=88 Identities=23% Similarity=0.146 Sum_probs=42.0
Q ss_pred cccceeEeeccccccC----cCccccCCCCccEEEccCCcccccc----hHhhhccccccEEecCCCccccc----Cchh
Q 040935 40 FSLNKLILNMNQLYGG----MPLKLDSLTKLQYLDLSANKLWSLI----LENIDNLLKLCYLNLSNNQFIQK----IPIE 107 (139)
Q Consensus 40 ~~L~~l~l~~~~~~~~----~~~~~~~~~~L~~l~l~~n~~~~~~----~~~~~~~~~L~~l~l~~n~~~~~----~~~~ 107 (139)
+.|+.|++++|.++.. ++..+..+++|+++++++|.+.+.. ...+...+.|+.|++.+|.+++. +...
T Consensus 155 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~ 234 (372)
T 3un9_A 155 CQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARA 234 (372)
T ss_dssp CCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHH
T ss_pred CccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHH
Confidence 4455555555554321 1222344555555555555554432 22233445566666666555432 1222
Q ss_pred hhccCCCCeEEccCcccccc
Q 040935 108 LEKLIPLSELDLNYNFLDVE 127 (139)
Q Consensus 108 ~~~~~~L~~l~l~~n~l~~~ 127 (139)
+...++|++|++++|.+++.
T Consensus 235 L~~~~~L~~L~Ls~N~i~~~ 254 (372)
T 3un9_A 235 AREHPSLELLHLYFNELSSE 254 (372)
T ss_dssp HHHCSSCCEEECTTSSCCHH
T ss_pred HHhCCCCCEEeccCCCCCHH
Confidence 33445566666666655533
No 140
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.10 E-value=3.2e-11 Score=81.82 Aligned_cols=112 Identities=21% Similarity=0.178 Sum_probs=85.1
Q ss_pred CCccEEEccCCcceeechhhh-ccccccceeEeeccccccCcCccc-----cCCCCccEEEccCCcccccchH----hhh
Q 040935 16 SKLQVLDLSSNHIVGEIRVQL-GKLFSLNKLILNMNQLYGGMPLKL-----DSLTKLQYLDLSANKLWSLILE----NID 85 (139)
Q Consensus 16 ~~L~~l~l~~~~~~~~~~~~~-~~l~~L~~l~l~~~~~~~~~~~~~-----~~~~~L~~l~l~~n~~~~~~~~----~~~ 85 (139)
..|+.|++++|.++......+ ..+.+++.+++++|.++......+ ...+.|+++++++|.++..... .+.
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~ 180 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLA 180 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHH
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHh
Confidence 689999999999875444433 346789999999999865433433 3467899999999999764333 346
Q ss_pred ccccccEEecCCCccccc----CchhhhccCCCCeEEccCcccccc
Q 040935 86 NLLKLCYLNLSNNQFIQK----IPIELEKLIPLSELDLNYNFLDVE 127 (139)
Q Consensus 86 ~~~~L~~l~l~~n~~~~~----~~~~~~~~~~L~~l~l~~n~l~~~ 127 (139)
..+.|++|++.+|.+.+. +...+...++|+.|++++|.+++.
T Consensus 181 ~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~ 226 (372)
T 3un9_A 181 GNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDT 226 (372)
T ss_dssp TCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHH
T ss_pred cCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHH
Confidence 678999999999998653 244567778999999999999753
No 141
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.02 E-value=1.3e-10 Score=82.67 Aligned_cols=124 Identities=15% Similarity=0.050 Sum_probs=84.4
Q ss_pred CCCCccEEEccCCcceeechhhhcc-ccc-cceeEeecccc-cc-CcCccccCCCCccEEEccCCcccccc----hHhhh
Q 040935 14 DLSKLQVLDLSSNHIVGEIRVQLGK-LFS-LNKLILNMNQL-YG-GMPLKLDSLTKLQYLDLSANKLWSLI----LENID 85 (139)
Q Consensus 14 ~l~~L~~l~l~~~~~~~~~~~~~~~-l~~-L~~l~l~~~~~-~~-~~~~~~~~~~~L~~l~l~~n~~~~~~----~~~~~ 85 (139)
.+++|++|++.++.+++..+..+.. ++. |+.|++.+|.. .. ..+.....+++|+++++.+|.+.+.. +....
T Consensus 110 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~ 189 (592)
T 3ogk_B 110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQ 189 (592)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHH
T ss_pred hCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHh
Confidence 6788888888888877655555554 344 88888887752 11 11222346788999999988876553 23445
Q ss_pred ccccccEEecCCCccc----ccCchhhhccCCCCeEEccCcccccccCccccCcCCC
Q 040935 86 NLLKLCYLNLSNNQFI----QKIPIELEKLIPLSELDLNYNFLDVEIPFQICNMKSL 138 (139)
Q Consensus 86 ~~~~L~~l~l~~n~~~----~~~~~~~~~~~~L~~l~l~~n~l~~~~p~~~~~~~~L 138 (139)
.+++|+.|++.+|.++ +.++..+..+++|+.|++++|.+. .+|..+..+++|
T Consensus 190 ~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~-~l~~~~~~~~~L 245 (592)
T 3ogk_B 190 HNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEIL-ELVGFFKAAANL 245 (592)
T ss_dssp HCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGG-GGHHHHHHCTTC
T ss_pred cCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHH-HHHHHHhhhhHH
Confidence 6788889998888875 233445567888999999888876 455555555554
No 142
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.90 E-value=1.5e-08 Score=69.40 Aligned_cols=65 Identities=12% Similarity=0.033 Sum_probs=37.4
Q ss_pred cCCccccCCCCccEEEccCCcceeechhhhccccccceeEeeccccccCcCccccCCCCccEEEccC
Q 040935 7 SIPLEIGDLSKLQVLDLSSNHIVGEIRVQLGKLFSLNKLILNMNQLYGGMPLKLDSLTKLQYLDLSA 73 (139)
Q Consensus 7 ~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~ 73 (139)
.-+.+|.++.+|+.+.+.++.++......|. ...|+.+.+..+ +......+|..+.+|+.+.+..
T Consensus 171 I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~ 235 (401)
T 4fdw_A 171 LKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPE 235 (401)
T ss_dssp ECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCT
T ss_pred ehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCC
Confidence 3345677777777777777666544444443 355666655533 4344455566666666666654
No 143
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.87 E-value=1.8e-09 Score=66.46 Aligned_cols=115 Identities=15% Similarity=0.099 Sum_probs=87.5
Q ss_pred cccCCCCccEEEccCC-cceee----chhhhccccccceeEeeccccccC----cCccccCCCCccEEEccCCcccccch
Q 040935 11 EIGDLSKLQVLDLSSN-HIVGE----IRVQLGKLFSLNKLILNMNQLYGG----MPLKLDSLTKLQYLDLSANKLWSLIL 81 (139)
Q Consensus 11 ~~~~l~~L~~l~l~~~-~~~~~----~~~~~~~l~~L~~l~l~~~~~~~~----~~~~~~~~~~L~~l~l~~n~~~~~~~ 81 (139)
.+...+.|++|++.+| .+... +...+...+.|+.|++++|.+... +...+...++|+++++++|.+.....
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~ 110 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI 110 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHH
Confidence 4567889999999999 87643 344566678899999999998542 23445566889999999999987543
Q ss_pred ----HhhhccccccEEec--CCCccccc----CchhhhccCCCCeEEccCcccc
Q 040935 82 ----ENIDNLLKLCYLNL--SNNQFIQK----IPIELEKLIPLSELDLNYNFLD 125 (139)
Q Consensus 82 ----~~~~~~~~L~~l~l--~~n~~~~~----~~~~~~~~~~L~~l~l~~n~l~ 125 (139)
..+...+.|+.|++ .+|.+.+. +...+...++|+.|++++|.+.
T Consensus 111 ~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 111 LALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 34555678999999 88988654 3345566789999999999886
No 144
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.83 E-value=1e-09 Score=78.08 Aligned_cols=109 Identities=15% Similarity=0.121 Sum_probs=59.3
Q ss_pred CCCCccEEEccCCcceeechhhhc-cccccceeEeecc-ccccC-cCccccCCCCccEEEccCCcccccchHhhh----c
Q 040935 14 DLSKLQVLDLSSNHIVGEIRVQLG-KLFSLNKLILNMN-QLYGG-MPLKLDSLTKLQYLDLSANKLWSLILENID----N 86 (139)
Q Consensus 14 ~l~~L~~l~l~~~~~~~~~~~~~~-~l~~L~~l~l~~~-~~~~~-~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~----~ 86 (139)
.+++|++|++.++.+++..+..+. .+++|+.|++.+| .+... .+..+..+++|+++++.+|.+++.....+. .
T Consensus 103 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~ 182 (594)
T 2p1m_B 103 SYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDT 182 (594)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTT
T ss_pred hCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhc
Confidence 466777777777766655444443 4667777777766 33221 223334566777777777666554333332 3
Q ss_pred cccccEEecCCCc--cccc-CchhhhccCCCCeEEccCc
Q 040935 87 LLKLCYLNLSNNQ--FIQK-IPIELEKLIPLSELDLNYN 122 (139)
Q Consensus 87 ~~~L~~l~l~~n~--~~~~-~~~~~~~~~~L~~l~l~~n 122 (139)
+++|+.|++.+|. +... +......+++|+.|++++|
T Consensus 183 ~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~ 221 (594)
T 2p1m_B 183 YTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRA 221 (594)
T ss_dssp CCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTT
T ss_pred CCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCC
Confidence 4466666666654 2111 1112234466666666655
No 145
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.82 E-value=6e-09 Score=74.18 Aligned_cols=82 Identities=11% Similarity=0.059 Sum_probs=37.9
Q ss_pred CCCCccEEEccCCcceee----chhhhccccccceeEeecccccc----CcCccccCCCCccEEEccCCcccccchHhhh
Q 040935 14 DLSKLQVLDLSSNHIVGE----IRVQLGKLFSLNKLILNMNQLYG----GMPLKLDSLTKLQYLDLSANKLWSLILENID 85 (139)
Q Consensus 14 ~l~~L~~l~l~~~~~~~~----~~~~~~~l~~L~~l~l~~~~~~~----~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~ 85 (139)
.+++|++|++.+|.+++. .+.....+++|+.|++++|.+.. ..+..+..+++|+++++.+|.+... +..+.
T Consensus 162 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l-~~~~~ 240 (592)
T 3ogk_B 162 HCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILEL-VGFFK 240 (592)
T ss_dssp HCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGG-HHHHH
T ss_pred hCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHH-HHHHh
Confidence 345555555555554332 22233344555555555555431 1222233455555665555555432 23344
Q ss_pred ccccccEEecC
Q 040935 86 NLLKLCYLNLS 96 (139)
Q Consensus 86 ~~~~L~~l~l~ 96 (139)
.+++|+.+++.
T Consensus 241 ~~~~L~~L~l~ 251 (592)
T 3ogk_B 241 AAANLEEFCGG 251 (592)
T ss_dssp HCTTCCEEEEC
T ss_pred hhhHHHhhccc
Confidence 44455554443
No 146
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.80 E-value=6.5e-08 Score=66.29 Aligned_cols=101 Identities=11% Similarity=-0.007 Sum_probs=50.5
Q ss_pred chhhhccccccceeEeeccccc-----cCcCccccCCCCccEEEccCCcccccchHhhhccccccEEecCCCcccccCch
Q 040935 32 IRVQLGKLFSLNKLILNMNQLY-----GGMPLKLDSLTKLQYLDLSANKLWSLILENIDNLLKLCYLNLSNNQFIQKIPI 106 (139)
Q Consensus 32 ~~~~~~~l~~L~~l~l~~~~~~-----~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~ 106 (139)
....|..+.+|+.+.+.++.+. .....+|..+.+|+.+.+. +.+.......|.++.+|+.+.+..+ ++.....
T Consensus 263 ~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~ 340 (401)
T 4fdw_A 263 ASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQINFS 340 (401)
T ss_dssp CTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEECTT
T ss_pred ChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEEcHH
Confidence 3444555555555555554432 2334455555555555555 2344444555555566666665443 3233333
Q ss_pred hhhccCCCCeEEccCcccccccCccccCc
Q 040935 107 ELEKLIPLSELDLNYNFLDVEIPFQICNM 135 (139)
Q Consensus 107 ~~~~~~~L~~l~l~~n~l~~~~p~~~~~~ 135 (139)
.+..+ +|+.+++.+|.+....+..|..+
T Consensus 341 aF~~~-~L~~l~l~~n~~~~l~~~~F~~~ 368 (401)
T 4fdw_A 341 AFNNT-GIKEVKVEGTTPPQVFEKVWYGF 368 (401)
T ss_dssp SSSSS-CCCEEEECCSSCCBCCCSSCCCS
T ss_pred hCCCC-CCCEEEEcCCCCcccccccccCC
Confidence 45555 66666666665543333344443
No 147
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.79 E-value=4.4e-09 Score=74.86 Aligned_cols=86 Identities=14% Similarity=0.032 Sum_probs=36.7
Q ss_pred cccccceeEeeccccccCcCcccc-CCCCccEEEccCC-ccccc-chHhhhccccccEEecCCCcccccCchhhh----c
Q 040935 38 KLFSLNKLILNMNQLYGGMPLKLD-SLTKLQYLDLSAN-KLWSL-ILENIDNLLKLCYLNLSNNQFIQKIPIELE----K 110 (139)
Q Consensus 38 ~l~~L~~l~l~~~~~~~~~~~~~~-~~~~L~~l~l~~n-~~~~~-~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~----~ 110 (139)
.+++|+.++++++.+....+..+. .+++|+++++.+| .+... .+.....+++|+.|++.+|.+++..+..+. .
T Consensus 103 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~ 182 (594)
T 2p1m_B 103 SYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDT 182 (594)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTT
T ss_pred hCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhc
Confidence 344555555555544333333332 3445555555554 23221 112222445555555555554333222222 3
Q ss_pred cCCCCeEEccCcc
Q 040935 111 LIPLSELDLNYNF 123 (139)
Q Consensus 111 ~~~L~~l~l~~n~ 123 (139)
+++|+.|++++|.
T Consensus 183 ~~~L~~L~l~~~~ 195 (594)
T 2p1m_B 183 YTSLVSLNISCLA 195 (594)
T ss_dssp CCCCCEEECTTCC
T ss_pred CCcCcEEEecccC
Confidence 3355555555443
No 148
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.72 E-value=3.8e-09 Score=68.50 Aligned_cols=81 Identities=32% Similarity=0.325 Sum_probs=44.8
Q ss_pred ccccccceeEeeccccccC--cCccccCCCCccEEEccCCcccccc-hHhhhccccccEEecCCCcccccCc-------h
Q 040935 37 GKLFSLNKLILNMNQLYGG--MPLKLDSLTKLQYLDLSANKLWSLI-LENIDNLLKLCYLNLSNNQFIQKIP-------I 106 (139)
Q Consensus 37 ~~l~~L~~l~l~~~~~~~~--~~~~~~~~~~L~~l~l~~n~~~~~~-~~~~~~~~~L~~l~l~~n~~~~~~~-------~ 106 (139)
..++.|+.|++++|.+.+. ++..++.+++|+.|++++|.+.+.. ...+..+ .|+.|++.+|++++..+ .
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCccccCcchhHHHH
Confidence 3456666666666666542 2344455666666666666665541 1222222 66666666666654333 2
Q ss_pred hhhccCCCCeEE
Q 040935 107 ELEKLIPLSELD 118 (139)
Q Consensus 107 ~~~~~~~L~~l~ 118 (139)
.+..+++|+.||
T Consensus 246 il~~~P~L~~LD 257 (267)
T 3rw6_A 246 IRERFPKLLRLD 257 (267)
T ss_dssp HHHHCTTCCEES
T ss_pred HHHHCcccCeEC
Confidence 345666666665
No 149
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.69 E-value=6.1e-09 Score=67.56 Aligned_cols=67 Identities=33% Similarity=0.364 Sum_probs=55.0
Q ss_pred cCCCCccEEEccCCcccccc--hHhhhccccccEEecCCCcccccCchhhhccC--CCCeEEccCcccccccC
Q 040935 61 DSLTKLQYLDLSANKLWSLI--LENIDNLLKLCYLNLSNNQFIQKIPIELEKLI--PLSELDLNYNFLDVEIP 129 (139)
Q Consensus 61 ~~~~~L~~l~l~~n~~~~~~--~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~--~L~~l~l~~n~l~~~~p 129 (139)
..++.|++|++++|.++... +..+..+++|+.|++++|.+++. ..+..++ +|+.|++.+|++++.+|
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~ 237 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFR 237 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCS
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccC
Confidence 45789999999999998743 45677899999999999999764 3345555 99999999999987666
No 150
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.66 E-value=2.6e-08 Score=60.65 Aligned_cols=83 Identities=13% Similarity=0.035 Sum_probs=58.8
Q ss_pred ccceeEeeccccccCcCccccCCCCccEEEccCCc-ccccchHhhhcc----ccccEEecCCCc-ccccCchhhhccCCC
Q 040935 41 SLNKLILNMNQLYGGMPLKLDSLTKLQYLDLSANK-LWSLILENIDNL----LKLCYLNLSNNQ-FIQKIPIELEKLIPL 114 (139)
Q Consensus 41 ~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~-~~~~~~~~~~~~----~~L~~l~l~~n~-~~~~~~~~~~~~~~L 114 (139)
.|+.++++++.++...-..+..+++|++|++++|. +++.....+..+ ++|+.|++.+|. +++.--..+.++++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 57788888887765555666778888888888874 666555555543 368888888774 666544566778888
Q ss_pred CeEEccCcc
Q 040935 115 SELDLNYNF 123 (139)
Q Consensus 115 ~~l~l~~n~ 123 (139)
+.|+++++.
T Consensus 142 ~~L~L~~c~ 150 (176)
T 3e4g_A 142 KYLFLSDLP 150 (176)
T ss_dssp CEEEEESCT
T ss_pred CEEECCCCC
Confidence 888888873
No 151
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.54 E-value=2.8e-07 Score=62.38 Aligned_cols=112 Identities=18% Similarity=0.273 Sum_probs=59.0
Q ss_pred CCCccEEEccCCcceeechhhhc--cccccceeEeec--cccccC-----cCccc--cCCCCccEEEccCCcccccchHh
Q 040935 15 LSKLQVLDLSSNHIVGEIRVQLG--KLFSLNKLILNM--NQLYGG-----MPLKL--DSLTKLQYLDLSANKLWSLILEN 83 (139)
Q Consensus 15 l~~L~~l~l~~~~~~~~~~~~~~--~l~~L~~l~l~~--~~~~~~-----~~~~~--~~~~~L~~l~l~~n~~~~~~~~~ 83 (139)
+++|+.|.+..+.+.......+. .+++|+.|++.. +...+. +...+ ..+++|++|++.+|.+.......
T Consensus 192 ~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~ 271 (362)
T 2ra8_A 192 RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEM 271 (362)
T ss_dssp CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHH
T ss_pred CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHH
Confidence 44555555554444322222222 466777776642 111000 01112 24667777777777765433322
Q ss_pred hh---ccccccEEecCCCccccc----CchhhhccCCCCeEEccCccccc
Q 040935 84 ID---NLLKLCYLNLSNNQFIQK----IPIELEKLIPLSELDLNYNFLDV 126 (139)
Q Consensus 84 ~~---~~~~L~~l~l~~n~~~~~----~~~~~~~~~~L~~l~l~~n~l~~ 126 (139)
+. .++.|++|+++.|.+.+. +...+..++.|+.|++++|.++.
T Consensus 272 la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d 321 (362)
T 2ra8_A 272 FLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSD 321 (362)
T ss_dssp HHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCH
T ss_pred HHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCH
Confidence 22 466788888877777543 22233456777888887777654
No 152
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.49 E-value=1.5e-07 Score=57.31 Aligned_cols=85 Identities=18% Similarity=0.164 Sum_probs=68.4
Q ss_pred CCCccEEEccCCcceeechhhhccccccceeEeeccc-cccCcCccccCC----CCccEEEccCCc-ccccchHhhhccc
Q 040935 15 LSKLQVLDLSSNHIVGEIRVQLGKLFSLNKLILNMNQ-LYGGMPLKLDSL----TKLQYLDLSANK-LWSLILENIDNLL 88 (139)
Q Consensus 15 l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~-~~~~~~~~~~~~----~~L~~l~l~~n~-~~~~~~~~~~~~~ 88 (139)
-..|+.|+++++.+++..-..+..+++|+.|++++|. ++...-..++.+ ++|++|++++|. +++.....+..++
T Consensus 60 ~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~ 139 (176)
T 3e4g_A 60 KYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFR 139 (176)
T ss_dssp CCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCT
T ss_pred CceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCC
Confidence 3579999999999887666677889999999999985 544434445553 479999999984 8887777788899
Q ss_pred cccEEecCCCc
Q 040935 89 KLCYLNLSNNQ 99 (139)
Q Consensus 89 ~L~~l~l~~n~ 99 (139)
+|+.|++.++.
T Consensus 140 ~L~~L~L~~c~ 150 (176)
T 3e4g_A 140 NLKYLFLSDLP 150 (176)
T ss_dssp TCCEEEEESCT
T ss_pred CCCEEECCCCC
Confidence 99999999986
No 153
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.49 E-value=3.8e-08 Score=60.55 Aligned_cols=97 Identities=15% Similarity=0.065 Sum_probs=74.2
Q ss_pred echhhhccccccceeEeecc-ccccC----cCccccCCCCccEEEccCCcccccch----HhhhccccccEEecCCCccc
Q 040935 31 EIRVQLGKLFSLNKLILNMN-QLYGG----MPLKLDSLTKLQYLDLSANKLWSLIL----ENIDNLLKLCYLNLSNNQFI 101 (139)
Q Consensus 31 ~~~~~~~~l~~L~~l~l~~~-~~~~~----~~~~~~~~~~L~~l~l~~n~~~~~~~----~~~~~~~~L~~l~l~~n~~~ 101 (139)
.+...+...+.|+.+++++| .+... +...+...++|+++++++|.+..... ..+...+.|++|++.+|.+.
T Consensus 27 ~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~ 106 (185)
T 1io0_A 27 TLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFIS 106 (185)
T ss_dssp HHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCC
T ss_pred HHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCC
Confidence 45556777889999999999 87532 33455677899999999999976543 33445578999999999996
Q ss_pred cc----CchhhhccCCCCeEEc--cCcccccc
Q 040935 102 QK----IPIELEKLIPLSELDL--NYNFLDVE 127 (139)
Q Consensus 102 ~~----~~~~~~~~~~L~~l~l--~~n~l~~~ 127 (139)
+. +...+...+.|++|++ ++|.++..
T Consensus 107 ~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~ 138 (185)
T 1io0_A 107 GSGILALVEALQSNTSLIELRIDNQSQPLGNN 138 (185)
T ss_dssp HHHHHHHHHGGGGCSSCCEEECCCCSSCCCHH
T ss_pred HHHHHHHHHHHHhCCCceEEEecCCCCCCCHH
Confidence 54 3445677789999999 88988754
No 154
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.46 E-value=6.3e-08 Score=65.51 Aligned_cols=114 Identities=16% Similarity=0.112 Sum_probs=62.7
Q ss_pred cccCCCCccEEEccCCcceeechhhhccccccceeEeeccccccCcCcccc--CCCCccEEEccC--Cccc-cc----ch
Q 040935 11 EIGDLSKLQVLDLSSNHIVGEIRVQLGKLFSLNKLILNMNQLYGGMPLKLD--SLTKLQYLDLSA--NKLW-SL----IL 81 (139)
Q Consensus 11 ~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~--~~~~L~~l~l~~--n~~~-~~----~~ 81 (139)
.+..++.|+.|.+.++.-. ..+. + .+++|+.|++..+.+.......+. .+++|++|++.. +... .. ..
T Consensus 167 ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~ 243 (362)
T 2ra8_A 167 VLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFR 243 (362)
T ss_dssp HHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTG
T ss_pred HHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHH
Confidence 3445666777777665311 1222 2 256677777766655332222332 567788877742 1111 10 00
Q ss_pred Hhh--hccccccEEecCCCcccccCchhhh---ccCCCCeEEccCcccccc
Q 040935 82 ENI--DNLLKLCYLNLSNNQFIQKIPIELE---KLIPLSELDLNYNFLDVE 127 (139)
Q Consensus 82 ~~~--~~~~~L~~l~l~~n~~~~~~~~~~~---~~~~L~~l~l~~n~l~~~ 127 (139)
..+ ..+++|++|++.+|.+.+.....+. .+++|++|+++.|.+++.
T Consensus 244 ~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~ 294 (362)
T 2ra8_A 244 PLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDE 294 (362)
T ss_dssp GGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHH
T ss_pred HHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChH
Confidence 112 2467888888888877543333333 466888888888887653
No 155
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.45 E-value=2.1e-06 Score=58.58 Aligned_cols=123 Identities=7% Similarity=0.032 Sum_probs=89.9
Q ss_pred CccccCCCCccEEEccCCcceeechhhhccccccceeEeeccccccCcCccccCCCCccEEEccCCcccccchHhhhccc
Q 040935 9 PLEIGDLSKLQVLDLSSNHIVGEIRVQLGKLFSLNKLILNMNQLYGGMPLKLDSLTKLQYLDLSANKLWSLILENIDNLL 88 (139)
Q Consensus 9 ~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~ 88 (139)
..+|.++..|+.+.+...... .....|..+..|+.+.+... +......+|..+.+|+.+.+.++ ++......|.++.
T Consensus 258 ~~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~ 334 (394)
T 4gt6_A 258 THAFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFSSR-ITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCE 334 (394)
T ss_dssp TTTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCT
T ss_pred cceeeecccccEEecccccce-ecCcccccccccccccCCCc-ccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCC
Confidence 446778888888888776554 66678888888998888643 44556678888999999998764 6666777888889
Q ss_pred cccEEecCCCcccccCchhhhccCCCCeEEccCcccccccCccccCcCCC
Q 040935 89 KLCYLNLSNNQFIQKIPIELEKLIPLSELDLNYNFLDVEIPFQICNMKSL 138 (139)
Q Consensus 89 ~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~p~~~~~~~~L 138 (139)
+|+.+.+..+ ++..-...+..+++|+.+++.++.... ..+..+..|
T Consensus 335 ~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~L 380 (394)
T 4gt6_A 335 QLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQW---NAISTDSGL 380 (394)
T ss_dssp TCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH---HTCBCCCCC
T ss_pred CCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceeeh---hhhhccCCC
Confidence 9999998765 444445578899999999998875431 344444444
No 156
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.39 E-value=4.4e-06 Score=56.55 Aligned_cols=123 Identities=11% Similarity=0.028 Sum_probs=74.6
Q ss_pred ccccCCCCccEEEccCCcceeechhhhccccccceeEeeccccccCcCccccCCCCccEEEccCCcccccchHhhhcccc
Q 040935 10 LEIGDLSKLQVLDLSSNHIVGEIRVQLGKLFSLNKLILNMNQLYGGMPLKLDSLTKLQYLDLSANKLWSLILENIDNLLK 89 (139)
Q Consensus 10 ~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~ 89 (139)
.++.++..|+.+.+..+ ++......|..+..++.+.+..+ +......+|..+.+|+.+.+.++.+.......|.++.+
T Consensus 234 ~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~ 311 (379)
T 4h09_A 234 GAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVK 311 (379)
T ss_dssp TTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTT
T ss_pred ccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCC
Confidence 34555666666666554 33344556666667777766544 33444556777777888777777776666677777777
Q ss_pred ccEEecCCCcccccCchhhhccCCCCeEEccCcccccccCccccCcC
Q 040935 90 LCYLNLSNNQFIQKIPIELEKLIPLSELDLNYNFLDVEIPFQICNMK 136 (139)
Q Consensus 90 L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~p~~~~~~~ 136 (139)
|+.+.+..+ ++..-...+..+++|+.+.+..+ ++..-..+|.+|.
T Consensus 312 L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~ 356 (379)
T 4h09_A 312 LSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGSS 356 (379)
T ss_dssp CCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTSS
T ss_pred CCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCCC
Confidence 888777654 33333445677777777766543 4323334454443
No 157
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.30 E-value=1.6e-05 Score=53.84 Aligned_cols=126 Identities=16% Similarity=0.103 Sum_probs=93.4
Q ss_pred ccccCCCCccEEEccCCcceeechhhhccccccceeEeeccccccCcCccccCCCCccEEEccCCcccccchHhhhcccc
Q 040935 10 LEIGDLSKLQVLDLSSNHIVGEIRVQLGKLFSLNKLILNMNQLYGGMPLKLDSLTKLQYLDLSANKLWSLILENIDNLLK 89 (139)
Q Consensus 10 ~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~ 89 (139)
.++.....++.+.+..+- .......|..+..|+.+.+..+ +......+|..+..++.+.+.. .+.......|..+.+
T Consensus 211 ~~f~~~~~l~~i~~~~~~-~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~-~i~~i~~~aF~~c~~ 287 (379)
T 4h09_A 211 YGFSYGKNLKKITITSGV-TTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYA-KVKTVPYLLCSGCSN 287 (379)
T ss_dssp TTTTTCSSCSEEECCTTC-CEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECC-CCSEECTTTTTTCTT
T ss_pred cccccccccceeeeccce-eEEccccccCCccceEEEcCCC-ccEeCccccceeehhccccccc-cceeccccccccccc
Confidence 345566677777775553 3355667778888998888766 4455567888888999998865 355666677889999
Q ss_pred ccEEecCCCcccccCchhhhccCCCCeEEccCcccccccCccccCcCCCC
Q 040935 90 LCYLNLSNNQFIQKIPIELEKLIPLSELDLNYNFLDVEIPFQICNMKSLE 139 (139)
Q Consensus 90 L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~p~~~~~~~~L~ 139 (139)
|+.+.+.++.++......+..+.+|+.+++..+ ++..-...|.+|.+|+
T Consensus 288 L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~ 336 (379)
T 4h09_A 288 LTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALS 336 (379)
T ss_dssp CCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCC
T ss_pred cccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCC
Confidence 999999888776555667899999999999755 6534456788888774
No 158
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.23 E-value=7.7e-06 Score=55.77 Aligned_cols=100 Identities=14% Similarity=0.071 Sum_probs=66.5
Q ss_pred hhhccccccceeEeeccccccCcCccccCCCCccEEEccCCcccccchHhhhccccccEEecCCCcccccCchhhhccCC
Q 040935 34 VQLGKLFSLNKLILNMNQLYGGMPLKLDSLTKLQYLDLSANKLWSLILENIDNLLKLCYLNLSNNQFIQKIPIELEKLIP 113 (139)
Q Consensus 34 ~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~ 113 (139)
..|..+.+|+.+.+..+ +......+|..+.+|+.+.+..+ +......+|.++.+|+.+.+..+ ++..-...+..+++
T Consensus 291 ~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~ 367 (394)
T 4fs7_A 291 KTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCIN 367 (394)
T ss_dssp TTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTT
T ss_pred ccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCC
Confidence 34555666777766554 43455567777888888887643 66666677888888888888766 44444556778888
Q ss_pred CCeEEccCcccccccCccccCcCCC
Q 040935 114 LSELDLNYNFLDVEIPFQICNMKSL 138 (139)
Q Consensus 114 L~~l~l~~n~l~~~~p~~~~~~~~L 138 (139)
|+.+++..+ +. .+...|.+|.+|
T Consensus 368 L~~i~lp~~-~~-~~~~~F~~c~~L 390 (394)
T 4fs7_A 368 LKKVELPKR-LE-QYRYDFEDTTKF 390 (394)
T ss_dssp CCEEEEEGG-GG-GGGGGBCTTCEE
T ss_pred CCEEEECCC-CE-EhhheecCCCCC
Confidence 888887654 33 445667777665
No 159
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.15 E-value=3.7e-05 Score=52.38 Aligned_cols=122 Identities=11% Similarity=0.027 Sum_probs=80.4
Q ss_pred cccCCCCccEEEccCCcceeechhhhccccccceeEeeccccccCcCccccCCCCccEEEccCCcccccchHhhhccccc
Q 040935 11 EIGDLSKLQVLDLSSNHIVGEIRVQLGKLFSLNKLILNMNQLYGGMPLKLDSLTKLQYLDLSANKLWSLILENIDNLLKL 90 (139)
Q Consensus 11 ~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L 90 (139)
++..+..++.+.+..+... .....|..+..++........+ ....|..+.+|+.+.+.++ +.......|.++.+|
T Consensus 248 ~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i---~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L 322 (394)
T 4fs7_A 248 VFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIV---PEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSL 322 (394)
T ss_dssp TTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEE---CTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTC
T ss_pred cccccccceeEEcCCCcce-eeccccccccccceeccCceee---ccccccccccccccccccc-cceechhhhcCCCCC
Confidence 3444555555555444332 3444555555555555544332 2345667788888888654 666677788889999
Q ss_pred cEEecCCCcccccCchhhhccCCCCeEEccCcccccccCccccCcCCCC
Q 040935 91 CYLNLSNNQFIQKIPIELEKLIPLSELDLNYNFLDVEIPFQICNMKSLE 139 (139)
Q Consensus 91 ~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~p~~~~~~~~L~ 139 (139)
+.+++..+ ++..-...+..+.+|+.+++..+ ++..-...|.+|.+|+
T Consensus 323 ~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~ 369 (394)
T 4fs7_A 323 VSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLK 369 (394)
T ss_dssp CEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCC
T ss_pred CEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCC
Confidence 99999755 44444557889999999999776 6645567888888874
No 160
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.93 E-value=6e-05 Score=51.35 Aligned_cols=110 Identities=12% Similarity=0.063 Sum_probs=79.1
Q ss_pred CccccCCCCccEEEccCCcceeechhhhccccccceeEeeccccccCcCccccCCCCccEEEccCCcccccchHhhhccc
Q 040935 9 PLEIGDLSKLQVLDLSSNHIVGEIRVQLGKLFSLNKLILNMNQLYGGMPLKLDSLTKLQYLDLSANKLWSLILENIDNLL 88 (139)
Q Consensus 9 ~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~ 88 (139)
..++.++..|+.+.+.. .+.......|..+.+|+.+.+..+ +......+|..+.+|+.+.+..+ ++.....+|.++.
T Consensus 281 ~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~ 357 (394)
T 4gt6_A 281 TGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCT 357 (394)
T ss_dssp TTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCT
T ss_pred CcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCC
Confidence 45778899999999864 455467778999999999999865 54666789999999999999754 7777788899999
Q ss_pred cccEEecCCCcccccCchhhhccCCCCeEEccCccc
Q 040935 89 KLCYLNLSNNQFIQKIPIELEKLIPLSELDLNYNFL 124 (139)
Q Consensus 89 ~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~l 124 (139)
+|+.+.+.++.... ..+.....|+.+.+..+.+
T Consensus 358 ~L~~i~~~~~~~~~---~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 358 ALNNIEYSGSRSQW---NAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp TCCEEEESSCHHHH---HTCBCCCCC----------
T ss_pred CCCEEEECCceeeh---hhhhccCCCCEEEeCCCCE
Confidence 99999998875422 3456667888887766543
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.50 E-value=0.00015 Score=44.89 Aligned_cols=113 Identities=11% Similarity=0.146 Sum_probs=73.9
Q ss_pred cCCCCccEEEccCC-ccee----echhhhccccccceeEeeccccccC----cCccccCCCCccEEEccCCcccccchHh
Q 040935 13 GDLSKLQVLDLSSN-HIVG----EIRVQLGKLFSLNKLILNMNQLYGG----MPLKLDSLTKLQYLDLSANKLWSLILEN 83 (139)
Q Consensus 13 ~~l~~L~~l~l~~~-~~~~----~~~~~~~~l~~L~~l~l~~~~~~~~----~~~~~~~~~~L~~l~l~~n~~~~~~~~~ 83 (139)
..-+.|+.|++.++ .+.+ .+-..+..-+.|+.|++++|.+... +.+.+.....|++|++..|.+.......
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~a 117 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR 117 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHH
Confidence 34567888888875 6543 2344556666788899988888633 3344456678899999999887654433
Q ss_pred ----hhccccccEEecCCC---cccc----cCchhhhccCCCCeEEccCcccc
Q 040935 84 ----IDNLLKLCYLNLSNN---QFIQ----KIPIELEKLIPLSELDLNYNFLD 125 (139)
Q Consensus 84 ----~~~~~~L~~l~l~~n---~~~~----~~~~~~~~~~~L~~l~l~~n~l~ 125 (139)
+..-..|+.|++.++ .+.. .+...+..-+.|+.++++.|.+.
T Consensus 118 la~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~g 170 (197)
T 1pgv_A 118 LLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASME 170 (197)
T ss_dssp HHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHH
T ss_pred HHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCcc
Confidence 333356888888754 3322 13345566678888888877653
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.26 E-value=0.00019 Score=44.41 Aligned_cols=92 Identities=11% Similarity=0.026 Sum_probs=66.6
Q ss_pred echhhhccccccceeEeecc-cccc----CcCccccCCCCccEEEccCCcccccchH----hhhccccccEEecCCCccc
Q 040935 31 EIRVQLGKLFSLNKLILNMN-QLYG----GMPLKLDSLTKLQYLDLSANKLWSLILE----NIDNLLKLCYLNLSNNQFI 101 (139)
Q Consensus 31 ~~~~~~~~l~~L~~l~l~~~-~~~~----~~~~~~~~~~~L~~l~l~~n~~~~~~~~----~~~~~~~L~~l~l~~n~~~ 101 (139)
.+...+..-+.|+.|+++++ .+.. .+.+.+.....|+.|++.+|.+.+.... .+..=..|++|++..|.+.
T Consensus 32 ~l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig 111 (197)
T 1pgv_A 32 CINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT 111 (197)
T ss_dssp HHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred HHHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCC
Confidence 34445556678999999885 6642 2345667788999999999999865433 3434478999999999996
Q ss_pred cc----CchhhhccCCCCeEEccCc
Q 040935 102 QK----IPIELEKLIPLSELDLNYN 122 (139)
Q Consensus 102 ~~----~~~~~~~~~~L~~l~l~~n 122 (139)
+. +...+..-+.|+.|++++|
T Consensus 112 ~~Ga~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 112 PELLARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp HHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred HHHHHHHHHHHhhCCceeEEECCCC
Confidence 53 2334566678999999865
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.23 E-value=0.00076 Score=38.91 Aligned_cols=36 Identities=33% Similarity=0.335 Sum_probs=18.4
Q ss_pred ccceeEeeccccccCcCccccCCCCccEEEccCCcc
Q 040935 41 SLNKLILNMNQLYGGMPLKLDSLTKLQYLDLSANKL 76 (139)
Q Consensus 41 ~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~ 76 (139)
+++.|++++|.++...+..|..+++|+++++.+|.+
T Consensus 32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred CCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 355555555555444444445555555555555543
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.09 E-value=0.0015 Score=37.71 Aligned_cols=57 Identities=21% Similarity=0.158 Sum_probs=44.7
Q ss_pred ceeEeeccccc-cCcCccccCCCCccEEEccCCcccccchHhhhccccccEEecCCCccc
Q 040935 43 NKLILNMNQLY-GGMPLKLDSLTKLQYLDLSANKLWSLILENIDNLLKLCYLNLSNNQFI 101 (139)
Q Consensus 43 ~~l~l~~~~~~-~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~ 101 (139)
..++.+++.++ ..+|..+ ..++++|+|++|+++.+.+..|..+++|+.+++.+|++.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 35677777773 1555432 236899999999999988888999999999999999874
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=86.29 E-value=2.6 Score=22.76 Aligned_cols=45 Identities=13% Similarity=-0.043 Sum_probs=23.3
Q ss_pred cccCCccccCCCCccEEEccCCcceeechhhhccccccceeEeecc
Q 040935 5 PRSIPLEIGDLSKLQVLDLSSNHIVGEIRVQLGKLFSLNKLILNMN 50 (139)
Q Consensus 5 ~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~~ 50 (139)
+..-..+|.++..|+.+.+..+-- ..-...|..+.+|+.+.+...
T Consensus 9 t~I~~~aF~~c~~L~~i~iP~~v~-~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 9 VGMDKSLFAGNTVIREITVQPNIG-LLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CSSCSCTTTTCTTCCCEEECTTSS-CCCTTSSTTCTTCCCEEECCS
T ss_pred CEecHHHhcCCCCCcEEEcCCchh-eEcHHHHhccCCccEEEEcCC
Confidence 333445566666666666555432 244445555556655555443
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=76.57 E-value=3.4 Score=22.33 Aligned_cols=47 Identities=15% Similarity=0.036 Sum_probs=29.6
Q ss_pred cceeechhhhccccccceeEeeccccccCcCccccCCCCccEEEccCC
Q 040935 27 HIVGEIRVQLGKLFSLNKLILNMNQLYGGMPLKLDSLTKLQYLDLSAN 74 (139)
Q Consensus 27 ~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n 74 (139)
.++..-...|..+..|+.+.+..+- ..+...+|..+.+|+.+.+...
T Consensus 7 ~vt~I~~~aF~~c~~L~~i~iP~~v-~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 7 PVVGMDKSLFAGNTVIREITVQPNI-GLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCCSSCSCTTTTCTTCCCEEECTTS-SCCCTTSSTTCTTCCCEEECCS
T ss_pred ccCEecHHHhcCCCCCcEEEcCCch-heEcHHHHhccCCccEEEEcCC
Confidence 3444445566777777777776653 3555667777777777776543
No 167
>1g1p_A Conotoxin EVIA; three disulfide linkages, CIS/trans isomerism of Leu12- Pro13 peptide bond, hydroxyproline; HET: HYP; NMR {Synthetic} SCOP: g.3.6.1 PDB: 1g1z_A*
Probab=20.74 E-value=50 Score=13.18 Aligned_cols=10 Identities=30% Similarity=0.982 Sum_probs=6.2
Q ss_pred CccccCcCCC
Q 040935 129 PFQICNMKSL 138 (139)
Q Consensus 129 p~~~~~~~~L 138 (139)
|..|++++-|
T Consensus 6 pygfcslpil 15 (33)
T 1g1p_A 6 PYGFCSLPIL 15 (33)
T ss_dssp TTSBCCCSSS
T ss_pred cccceechhh
Confidence 6666666654
Done!