Query 040937
Match_columns 508
No_of_seqs 320 out of 1906
Neff 6.1
Searched_HMMs 46136
Date Fri Mar 29 13:18:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040937.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040937hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1677 CCCH-type Zn-finger pr 99.7 2.5E-16 5.4E-21 162.8 17.7 128 125-261 76-204 (332)
2 KOG1677 CCCH-type Zn-finger pr 99.5 1.5E-14 3.3E-19 149.5 8.3 125 307-475 79-204 (332)
3 KOG1492 C3H1-type Zn-finger pr 99.5 8E-15 1.7E-19 140.7 2.9 130 108-339 184-313 (377)
4 KOG1040 Polyadenylation factor 99.5 6.8E-14 1.5E-18 143.5 7.9 143 132-426 42-186 (325)
5 KOG1492 C3H1-type Zn-finger pr 99.4 7.3E-14 1.6E-18 134.1 5.7 141 186-483 205-345 (377)
6 KOG1040 Polyadenylation factor 99.4 5.5E-13 1.2E-17 136.8 8.5 154 132-425 74-228 (325)
7 KOG2494 C3H1-type Zn-finger pr 99.2 1E-11 2.2E-16 125.5 6.2 211 188-472 38-253 (331)
8 COG5084 YTH1 Cleavage and poly 99.1 1.6E-09 3.5E-14 109.3 14.9 198 136-476 3-237 (285)
9 COG5063 CTH1 CCCH-type Zn-fing 99.0 2.1E-09 4.6E-14 107.6 10.7 215 186-472 114-338 (351)
10 COG5084 YTH1 Cleavage and poly 98.8 5.1E-08 1.1E-12 98.5 14.2 116 134-339 73-190 (285)
11 COG5063 CTH1 CCCH-type Zn-fing 98.8 1E-07 2.2E-12 95.6 13.5 240 41-340 65-340 (351)
12 KOG1039 Predicted E3 ubiquitin 98.7 1E-08 2.2E-13 106.4 5.2 226 235-480 9-282 (344)
13 KOG4791 Uncharacterized conser 98.6 2.1E-08 4.5E-13 105.4 3.0 136 136-340 4-143 (667)
14 KOG2494 C3H1-type Zn-finger pr 98.5 1.5E-07 3.2E-12 95.7 6.4 102 136-259 38-154 (331)
15 KOG4791 Uncharacterized conser 98.2 9.3E-07 2E-11 93.3 3.5 141 188-425 4-144 (667)
16 PF00642 zf-CCCH: Zinc finger 98.1 5.3E-07 1.2E-11 59.8 -0.3 25 447-471 2-26 (27)
17 PF00642 zf-CCCH: Zinc finger 98.1 1E-06 2.2E-11 58.4 0.4 25 134-158 2-26 (27)
18 KOG1595 CCCH-type Zn-finger pr 98.0 2E-05 4.2E-10 85.1 9.3 58 398-474 236-293 (528)
19 KOG1763 Uncharacterized conser 97.8 3.7E-06 8.1E-11 84.3 0.1 83 395-478 89-196 (343)
20 KOG1595 CCCH-type Zn-finger pr 97.7 3.5E-05 7.5E-10 83.2 4.4 83 146-259 208-292 (528)
21 COG5252 Uncharacterized conser 97.6 1.5E-05 3.2E-10 77.8 -0.1 93 394-487 81-190 (299)
22 smart00356 ZnF_C3H1 zinc finge 97.5 6.4E-05 1.4E-09 49.1 2.4 25 447-472 3-27 (27)
23 KOG3702 Nuclear polyadenylated 97.5 0.00094 2E-08 73.8 12.5 22 235-260 545-566 (681)
24 smart00356 ZnF_C3H1 zinc finge 97.4 0.0001 2.2E-09 48.1 2.6 25 186-211 3-27 (27)
25 KOG2333 Uncharacterized conser 97.4 6.6E-05 1.4E-09 80.2 1.6 60 397-470 75-136 (614)
26 KOG1763 Uncharacterized conser 97.0 0.00013 2.8E-09 73.4 -0.6 78 182-260 87-192 (343)
27 KOG3702 Nuclear polyadenylated 96.3 0.015 3.3E-07 64.5 9.2 21 135-159 544-564 (681)
28 KOG2185 Predicted RNA-processi 96.2 0.002 4.2E-08 67.7 1.7 32 308-340 134-165 (486)
29 COG5252 Uncharacterized conser 96.1 0.0013 2.8E-08 64.5 -0.6 77 183-260 81-177 (299)
30 PF14608 zf-CCCH_2: Zinc finge 95.7 0.0084 1.8E-07 36.5 2.0 19 316-337 1-19 (19)
31 KOG2333 Uncharacterized conser 95.5 0.0059 1.3E-07 65.7 1.7 61 187-258 76-138 (614)
32 PF14608 zf-CCCH_2: Zinc finge 95.3 0.012 2.5E-07 35.9 1.8 19 450-471 1-19 (19)
33 KOG2185 Predicted RNA-processi 95.2 0.009 2E-07 62.9 1.6 34 128-162 133-166 (486)
34 COG5152 Uncharacterized conser 94.0 0.023 4.9E-07 54.7 1.2 25 136-160 142-166 (259)
35 COG5152 Uncharacterized conser 91.2 0.075 1.6E-06 51.3 0.5 26 188-213 142-167 (259)
36 KOG1039 Predicted E3 ubiquitin 91.0 0.097 2.1E-06 55.0 1.2 25 449-474 9-33 (344)
37 KOG2202 U2 snRNP splicing fact 90.1 0.07 1.5E-06 53.4 -0.8 29 313-341 14-42 (260)
38 KOG2202 U2 snRNP splicing fact 88.0 0.28 6E-06 49.2 1.8 28 132-159 12-39 (260)
39 KOG1813 Predicted E3 ubiquitin 86.1 0.23 5E-06 50.7 0.1 24 136-159 187-210 (313)
40 PF10650 zf-C3H1: Putative zin 82.8 0.83 1.8E-05 29.3 1.5 22 188-210 1-22 (23)
41 KOG1813 Predicted E3 ubiquitin 82.5 0.38 8.2E-06 49.2 -0.2 28 448-475 186-213 (313)
42 PF10650 zf-C3H1: Putative zin 79.7 1.1 2.5E-05 28.7 1.3 22 235-257 1-22 (23)
43 KOG0153 Predicted RNA-binding 66.8 3.7 7.9E-05 43.1 2.1 28 233-261 160-187 (377)
44 KOG0153 Predicted RNA-binding 52.5 8.6 0.00019 40.4 1.9 30 444-474 157-186 (377)
No 1
>KOG1677 consensus CCCH-type Zn-finger protein [General function prediction only]
Probab=99.71 E-value=2.5e-16 Score=162.78 Aligned_cols=128 Identities=31% Similarity=0.669 Sum_probs=100.6
Q ss_pred CCCCCCCCCCCcCccccccCCCCCCCCCCCccCCCCCCCCCCCCCCcccccccCCCCCCCCCCCCccccccCCCCCC-CC
Q 040937 125 NLPVYPQRPGEKDCAYYMQTRTCKFGDTCKFDHPIWVPEGGIPDWKEVPVIASSESLPERPGEPDCPYFLKTQRCKF-GS 203 (508)
Q Consensus 125 ~~~~~p~r~~~~~C~~f~~tG~C~~G~~CkF~H~~~~~~gg~~~~~~~~~~~~~~~~p~r~~~~~C~~f~~tG~C~~-G~ 203 (508)
....|+.++....|.+|.+++.|.++..|+|.|+...... ++.........+++.++++|++|.++|.|++ |+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~p~~~~~~------~~~~~~~~~~~p~~~kt~lc~~~~~~g~c~y~ge 149 (332)
T KOG1677|consen 76 GSSPYPERSGEGDCSAYLRTGVCGYGSSCRYNHPDLRLRP------RPVRRSRGERKPERYKTPLCRSFRKSGTCKYRGE 149 (332)
T ss_pred ccCcCCCCCCccccccccccCCCCCCCCCCccCccccccc------CCccccccccCcccccCCcceeeecCccccccCc
Confidence 3455888888899999999999999999999998622111 0000124567788999999999999999999 99
Q ss_pred CCCCCCCCCcccCCCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCCcCCCCCCCC
Q 040937 204 KCKFNHPKDKLIGSSDSGNGDVSALPERPSEPPCAFYLKNGTCKFGATCKFDHPKDFQ 261 (508)
Q Consensus 204 ~C~f~H~~~~~~~~~~~~~~~~~~~P~r~~~~~C~~f~ktG~C~~G~~C~F~H~~~~~ 261 (508)
+|+|.|...+..... ..+....+.+.++++|.+|+++|.|+||..|+|.|+....
T Consensus 150 ~crfah~~~e~r~~~---~~~~~~~~~~~kt~lC~~f~~tG~C~yG~rC~F~H~~~~~ 204 (332)
T KOG1677|consen 150 QCRFAHGLEELRLPS---SENQVGNPPKYKTKLCPKFQKTGLCKYGSRCRFIHGEPED 204 (332)
T ss_pred hhhhcCCcccccccc---cchhhcCCCCCCCcCCCccccCCCCCCCCcCeecCCCccc
Confidence 999999987762110 1234556677899999999999999999999999998754
No 2
>KOG1677 consensus CCCH-type Zn-finger protein [General function prediction only]
Probab=99.53 E-value=1.5e-14 Score=149.51 Aligned_cols=125 Identities=38% Similarity=0.796 Sum_probs=97.4
Q ss_pred CCCCCCCCCCCCCCCCcccCCCCCCCCCCCCCCCcCCCCCcccCCCcccCCccccCccccCCCcccccccCccccccccC
Q 040937 307 GLPIRPGELDCPFYLKTGSCKYGSTCRYNHPERTAINPPAAAIVHPLITSPAASLGISVVSPAASLYQTIDPRLAQATLG 386 (508)
Q Consensus 307 ~~P~rpg~~~C~~y~ktG~Ck~G~~Crf~Hp~~~~~~p~~~~~~~p~~~s~~~~~~~~~~~P~~~~~~~~~p~~s~~~~g 386 (508)
.+|.+++...|.+|..++.|.++..|+|.|+.......... .
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~p~~~~~~~~~~-----------~--------------------------- 120 (332)
T KOG1677|consen 79 PYPERSGEGDCSAYLRTGVCGYGSSCRYNHPDLRLRPRPVR-----------R--------------------------- 120 (332)
T ss_pred cCCCCCCccccccccccCCCCCCCCCCccCcccccccCCcc-----------c---------------------------
Confidence 46777777899999999999999999999997322210000 0
Q ss_pred CCCCCCCCCCCCcCchhhhcCCCCCC-CCCCCCCCCCCccccCCCchhhhhhcccCCCCCCCCCCcccccCccccCCCCC
Q 040937 387 VSPSLYPQRPGQMECDYYMKTGVCKF-GEKCKFHHPIDRSAAKTPSQETVKLTLAGLPRREGAVHCPYYMKTGTCKYGAT 465 (508)
Q Consensus 387 ~~p~~~p~r~k~~~C~~y~~~G~C~~-G~~C~f~H~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~C~~y~~~G~C~fG~~ 465 (508)
......+++.++++|++|.+.|.|+| |++|+|+|+..+++... .+...+.+.++++++|.+|.++|.|+||.+
T Consensus 121 ~~~~~~p~~~kt~lc~~~~~~g~c~y~ge~crfah~~~e~r~~~------~~~~~~~~~~~kt~lC~~f~~tG~C~yG~r 194 (332)
T KOG1677|consen 121 SRGERKPERYKTPLCRSFRKSGTCKYRGEQCRFAHGLEELRLPS------SENQVGNPPKYKTKLCPKFQKTGLCKYGSR 194 (332)
T ss_pred cccccCcccccCCcceeeecCccccccCchhhhcCCcccccccc------cchhhcCCCCCCCcCCCccccCCCCCCCCc
Confidence 01123356788999999999999999 99999999998877321 123456888999999999999999999999
Q ss_pred CCCCCCCCCc
Q 040937 466 CKFDHPPPGE 475 (508)
Q Consensus 466 C~f~H~~p~~ 475 (508)
|+|.|+.+..
T Consensus 195 C~F~H~~~~~ 204 (332)
T KOG1677|consen 195 CRFIHGEPED 204 (332)
T ss_pred CeecCCCccc
Confidence 9999997644
No 3
>KOG1492 consensus C3H1-type Zn-finger protein [General function prediction only]
Probab=99.49 E-value=8e-15 Score=140.71 Aligned_cols=130 Identities=28% Similarity=0.640 Sum_probs=106.5
Q ss_pred cccCCCCCCCcccccCCCCCCCCCCCCCcCccccccCCCCCCCCCCCccCCCCCCCCCCCCCCcccccccCCCCCCCCCC
Q 040937 108 WYSTNSLAKRPRIESASNLPVYPQRPGEKDCAYYMQTRTCKFGDTCKFDHPIWVPEGGIPDWKEVPVIASSESLPERPGE 187 (508)
Q Consensus 108 ~~~~~~~~kr~r~e~~s~~~~~p~r~~~~~C~~f~~tG~C~~G~~CkF~H~~~~~~gg~~~~~~~~~~~~~~~~p~r~~~ 187 (508)
|.+...+.|++|+-++ +...|....|+||...|.|.+|..|+|+|... ..
T Consensus 184 wnnksyllkkkrflke-----vgnspsavycryynangicgkgaacrfvhept-------------------------rk 233 (377)
T KOG1492|consen 184 WNNKSYLLKKKRFLKE-----VGNSPSAVYCRYYNANGICGKGAACRFVHEPT-------------------------RK 233 (377)
T ss_pred EcChhHHHHHHHHHHH-----hCCCCceeEEEEecCCCcccCCceeeeecccc-------------------------cc
Confidence 4444557888888776 34556778999999999999999999999531 12
Q ss_pred CCccccccCCCCCCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCCcCCCCCCCCCCCCCC
Q 040937 188 PDCPYFLKTQRCKFGSKCKFNHPKDKLIGSSDSGNGDVSALPERPSEPPCAFYLKNGTCKFGATCKFDHPKDFQLPSVGQ 267 (508)
Q Consensus 188 ~~C~~f~~tG~C~~G~~C~f~H~~~~~~~~~~~~~~~~~~~P~r~~~~~C~~f~ktG~C~~G~~C~F~H~~~~~~~~~~~ 267 (508)
.+|..|++ |+|.+.+.|.++|..+.. ..+.|+||+- |.|. ..+|+|.|..-..
T Consensus 234 ticpkfln-grcnkaedcnlsheldpr------------------ripacryfll-gkcn-npncryvhihyse------ 286 (377)
T KOG1492|consen 234 TICPKFLN-GRCNKAEDCNLSHELDPR------------------RIPACRYFLL-GKCN-NPNCRYVHIHYSE------ 286 (377)
T ss_pred ccChHHhc-CccCchhcCCcccccCcc------------------ccchhhhhhh-ccCC-CCCceEEEEeecC------
Confidence 58999999 999999999999987643 3578999997 9998 8999999976321
Q ss_pred CCCCccccccccccccccCcCCCCCcccccCcccccCCCCCCCCCCCCCCCCCCCcccCCCCCCCCCCCCCC
Q 040937 268 ENGIGEQNESVIKTDETTGLLNPGMSLFSHAPAMLHNSKGLPIRPGELDCPFYLKTGSCKYGSTCRYNHPER 339 (508)
Q Consensus 268 ~~~~~~q~~s~~~~~~~~g~~~~~~~~~~~~Pa~~~~s~~~P~rpg~~~C~~y~ktG~Ck~G~~Crf~Hp~~ 339 (508)
..++|.-|.|.|+|..|..|+-.|...
T Consensus 287 ---------------------------------------------napicfefakygfcelgtscknqhilq 313 (377)
T KOG1492|consen 287 ---------------------------------------------NAPICFEFAKYGFCELGTSCKNQHILQ 313 (377)
T ss_pred ---------------------------------------------CCceeeeehhcceeccccccccceeee
Confidence 236899999999999999999999643
No 4
>KOG1040 consensus Polyadenylation factor I complex, subunit, Yth1 (CPSF subunit) [RNA processing and modification]
Probab=99.47 E-value=6.8e-14 Score=143.50 Aligned_cols=143 Identities=27% Similarity=0.628 Sum_probs=112.0
Q ss_pred CCCCcCccccccC-CCCCCCCCCCccCCCCCCCCCCCCCCcccccccCCCCCCCCCCCCccccccCCCCCCCCCCCCCCC
Q 040937 132 RPGEKDCAYYMQT-RTCKFGDTCKFDHPIWVPEGGIPDWKEVPVIASSESLPERPGEPDCPYFLKTQRCKFGSKCKFNHP 210 (508)
Q Consensus 132 r~~~~~C~~f~~t-G~C~~G~~CkF~H~~~~~~gg~~~~~~~~~~~~~~~~p~r~~~~~C~~f~~tG~C~~G~~C~f~H~ 210 (508)
+.+...|.++.+. -.|.+|..|.+.|.... ...++.+|++|++ |.|++||.|.|+|+
T Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~vcK~~l~-glC~kgD~C~Flhe 99 (325)
T KOG1040|consen 42 ESGRATCEFNESREKPCERGPICPKSHNDVS---------------------DSRGKVVCKHWLR-GLCKKGDQCEFLHE 99 (325)
T ss_pred ccccchhcccccCCCCccCCCCCccccCCcc---------------------ccCCceeehhhhh-hhhhccCcCcchhh
Confidence 3445688887632 46888899999996421 1225679999999 99999999999998
Q ss_pred CCcccCCCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCCcCCCCCCCCCCCCCCCCCCccccccccccccccCcCCC
Q 040937 211 KDKLIGSSDSGNGDVSALPERPSEPPCAFYLKNGTCKFGATCKFDHPKDFQLPSVGQENGIGEQNESVIKTDETTGLLNP 290 (508)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~P~r~~~~~C~~f~ktG~C~~G~~C~F~H~~~~~~~~~~~~~~~~~q~~s~~~~~~~~g~~~~ 290 (508)
.+.. ..+.|.||..+|.|.++.+|.|.|.....
T Consensus 100 ~~~~------------------k~rec~ff~~~g~c~~~~~c~y~h~dpqt----------------------------- 132 (325)
T KOG1040|consen 100 YDLT------------------KMRECKFFSLFGECTNGKDCPYLHGDPQT----------------------------- 132 (325)
T ss_pred hhhc------------------ccccccccccccccccccCCcccCCChhh-----------------------------
Confidence 7322 45789999999999999999999977410
Q ss_pred CCcccccCcccccCCCCCCCCCCCCCCCCCCCcccCCCCCCCCCCCCCCCcCCCCCcccCCCcccCCccccCccccCCCc
Q 040937 291 GMSLFSHAPAMLHNSKGLPIRPGELDCPFYLKTGSCKYGSTCRYNHPERTAINPPAAAIVHPLITSPAASLGISVVSPAA 370 (508)
Q Consensus 291 ~~~~~~~~Pa~~~~s~~~P~rpg~~~C~~y~ktG~Ck~G~~Crf~Hp~~~~~~p~~~~~~~p~~~s~~~~~~~~~~~P~~ 370 (508)
..++|.+|.+ |+|+-|+.|++.|...
T Consensus 133 ----------------------~~k~c~~~~~-g~c~~g~~c~~~h~~~------------------------------- 158 (325)
T KOG1040|consen 133 ----------------------AIKKCKWYKE-GFCRGGPSCKKRHERK------------------------------- 158 (325)
T ss_pred ----------------------hhhccchhhh-ccCCCcchhhhhhhcc-------------------------------
Confidence 2367999966 9999999999999643
Q ss_pred ccccccCccccccccCCCCCCCCCCCCCcCchhhhcCCCCCCCCC-CCCCCCCCccc
Q 040937 371 SLYQTIDPRLAQATLGVSPSLYPQRPGQMECDYYMKTGVCKFGEK-CKFHHPIDRSA 426 (508)
Q Consensus 371 ~~~~~~~p~~s~~~~g~~p~~~p~r~k~~~C~~y~~~G~C~~G~~-C~f~H~~~~~~ 426 (508)
++|..|. .|+|..|.+ |.+.|+...+.
T Consensus 159 ----------------------------~~c~~y~-~gfC~~g~q~c~~~hp~~~~~ 186 (325)
T KOG1040|consen 159 ----------------------------VLCPPYN-AGFCPKGPQRCDMLHPEFQQP 186 (325)
T ss_pred ----------------------------cCCCchh-hhhccCCCCcccccCCCCCCC
Confidence 3678888 599999988 99999877655
No 5
>KOG1492 consensus C3H1-type Zn-finger protein [General function prediction only]
Probab=99.45 E-value=7.3e-14 Score=134.13 Aligned_cols=141 Identities=26% Similarity=0.613 Sum_probs=113.9
Q ss_pred CCCCccccccCCCCCCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCCcCCCCCCCCCCCC
Q 040937 186 GEPDCPYFLKTQRCKFGSKCKFNHPKDKLIGSSDSGNGDVSALPERPSEPPCAFYLKNGTCKFGATCKFDHPKDFQLPSV 265 (508)
Q Consensus 186 ~~~~C~~f~~tG~C~~G~~C~f~H~~~~~~~~~~~~~~~~~~~P~r~~~~~C~~f~ktG~C~~G~~C~F~H~~~~~~~~~ 265 (508)
....|+||...|.|-+|..|+|.|.+... .+|.-|++ |.|....+|.+.|..+..
T Consensus 205 savycryynangicgkgaacrfvheptrk--------------------ticpkfln-grcnkaedcnlsheldpr---- 259 (377)
T KOG1492|consen 205 SAVYCRYYNANGICGKGAACRFVHEPTRK--------------------TICPKFLN-GRCNKAEDCNLSHELDPR---- 259 (377)
T ss_pred ceeEEEEecCCCcccCCceeeeecccccc--------------------ccChHHhc-CccCchhcCCcccccCcc----
Confidence 34579999999999999999999987543 68999998 999999999999987521
Q ss_pred CCCCCCccccccccccccccCcCCCCCcccccCcccccCCCCCCCCCCCCCCCCCCCcccCCCCCCCCCCCCCCCcCCCC
Q 040937 266 GQENGIGEQNESVIKTDETTGLLNPGMSLFSHAPAMLHNSKGLPIRPGELDCPFYLKTGSCKYGSTCRYNHPERTAINPP 345 (508)
Q Consensus 266 ~~~~~~~~q~~s~~~~~~~~g~~~~~~~~~~~~Pa~~~~s~~~P~rpg~~~C~~y~ktG~Ck~G~~Crf~Hp~~~~~~p~ 345 (508)
..+.|+||+- |.|. ..+|||.|..-..
T Consensus 260 -----------------------------------------------ripacryfll-gkcn-npncryvhihyse---- 286 (377)
T KOG1492|consen 260 -----------------------------------------------RIPACRYFLL-GKCN-NPNCRYVHIHYSE---- 286 (377)
T ss_pred -----------------------------------------------ccchhhhhhh-ccCC-CCCceEEEEeecC----
Confidence 2356999986 9996 6999999964311
Q ss_pred CcccCCCcccCCccccCccccCCCcccccccCccccccccCCCCCCCCCCCCCcCchhhhcCCCCCCCCCCCCCCCCCcc
Q 040937 346 AAAIVHPLITSPAASLGISVVSPAASLYQTIDPRLAQATLGVSPSLYPQRPGQMECDYYMKTGVCKFGEKCKFHHPIDRS 425 (508)
Q Consensus 346 ~~~~~~p~~~s~~~~~~~~~~~P~~~~~~~~~p~~s~~~~g~~p~~~p~r~k~~~C~~y~~~G~C~~G~~C~f~H~~~~~ 425 (508)
..++|-.|.+.|+|..|..|+-.|.+
T Consensus 287 ---------------------------------------------------napicfefakygfcelgtscknqhil--- 312 (377)
T KOG1492|consen 287 ---------------------------------------------------NAPICFEFAKYGFCELGTSCKNQHIL--- 312 (377)
T ss_pred ---------------------------------------------------CCceeeeehhcceeccccccccceee---
Confidence 13589999999999999999999953
Q ss_pred ccCCCchhhhhhcccCCCCCCCCCCcccccCccccCCCCCCCCCCCCCCcccccccCC
Q 040937 426 AAKTPSQETVKLTLAGLPRREGAVHCPYYMKTGTCKYGATCKFDHPPPGEVMAISALD 483 (508)
Q Consensus 426 ~~~~~~~~~~~~~~~~~p~~~~~~~C~~y~~~G~C~fG~~C~f~H~~p~~~~~~~~s~ 483 (508)
.|..|...|.|.. +.|-+.|-.....+.+.+.-
T Consensus 313 ------------------------qctdyamfgscnn-pqcslyhgavsadvpeqtea 345 (377)
T KOG1492|consen 313 ------------------------QCTDYAMFGSCNN-PQCSLYHGAVSADVPEQTEA 345 (377)
T ss_pred ------------------------eecchhhhcCCCC-CcceeecceeccCCcccccC
Confidence 5888988899998 89999997654444444433
No 6
>KOG1040 consensus Polyadenylation factor I complex, subunit, Yth1 (CPSF subunit) [RNA processing and modification]
Probab=99.40 E-value=5.5e-13 Score=136.81 Aligned_cols=154 Identities=25% Similarity=0.429 Sum_probs=117.3
Q ss_pred CCCCcCccccccCCCCCCCCCCCccCCCCCCCCCCCCCCcccccccCCCCCCCCCCCCccccccCCCCCCCCCCCCCCCC
Q 040937 132 RPGEKDCAYYMQTRTCKFGDTCKFDHPIWVPEGGIPDWKEVPVIASSESLPERPGEPDCPYFLKTQRCKFGSKCKFNHPK 211 (508)
Q Consensus 132 r~~~~~C~~f~~tG~C~~G~~CkF~H~~~~~~gg~~~~~~~~~~~~~~~~p~r~~~~~C~~f~~tG~C~~G~~C~f~H~~ 211 (508)
..+..+|+||++ |.|++||.|.|+|.... .+.+.|.||..+|.|..+..|.|.|..
T Consensus 74 ~~~~~vcK~~l~-glC~kgD~C~Flhe~~~-----------------------~k~rec~ff~~~g~c~~~~~c~y~h~d 129 (325)
T KOG1040|consen 74 SRGKVVCKHWLR-GLCKKGDQCEFLHEYDL-----------------------TKMRECKFFSLFGECTNGKDCPYLHGD 129 (325)
T ss_pred cCCceeehhhhh-hhhhccCcCcchhhhhh-----------------------cccccccccccccccccccCCcccCCC
Confidence 355689999997 99999999999997531 134589999999999999999999987
Q ss_pred CcccCCCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCCcCCCCCCCCCCCCCCCCCCccccccccccccccCcCCCC
Q 040937 212 DKLIGSSDSGNGDVSALPERPSEPPCAFYLKNGTCKFGATCKFDHPKDFQLPSVGQENGIGEQNESVIKTDETTGLLNPG 291 (508)
Q Consensus 212 ~~~~~~~~~~~~~~~~~P~r~~~~~C~~f~ktG~C~~G~~C~F~H~~~~~~~~~~~~~~~~~q~~s~~~~~~~~g~~~~~ 291 (508)
.+. ....|.+|.. |.|..|+.|++.|...
T Consensus 130 pqt------------------~~k~c~~~~~-g~c~~g~~c~~~h~~~-------------------------------- 158 (325)
T KOG1040|consen 130 PQT------------------AIKKCKWYKE-GFCRGGPSCKKRHERK-------------------------------- 158 (325)
T ss_pred hhh------------------hhhccchhhh-ccCCCcchhhhhhhcc--------------------------------
Confidence 432 2468999988 9999999999999764
Q ss_pred CcccccCcccccCCCCCCCCCCCCCCCCCCCcccCCCCCC-CCCCCCCCCcCCCCCcccCCCcccCCccccCccccCCCc
Q 040937 292 MSLFSHAPAMLHNSKGLPIRPGELDCPFYLKTGSCKYGST-CRYNHPERTAINPPAAAIVHPLITSPAASLGISVVSPAA 370 (508)
Q Consensus 292 ~~~~~~~Pa~~~~s~~~P~rpg~~~C~~y~ktG~Ck~G~~-Crf~Hp~~~~~~p~~~~~~~p~~~s~~~~~~~~~~~P~~ 370 (508)
+.|..|+. |+|+.|.. |-+.|+.......
T Consensus 159 -----------------------~~c~~y~~-gfC~~g~q~c~~~hp~~~~~~~-------------------------- 188 (325)
T KOG1040|consen 159 -----------------------VLCPPYNA-GFCPKGPQRCDMLHPEFQQPPF-------------------------- 188 (325)
T ss_pred -----------------------cCCCchhh-hhccCCCCcccccCCCCCCChh--------------------------
Confidence 35888976 99999998 9999997532100
Q ss_pred ccccccCccccccccCCCCCCCCCCCCCcCchhhhcCCCCCCCCCCCCCCCCCcc
Q 040937 371 SLYQTIDPRLAQATLGVSPSLYPQRPGQMECDYYMKTGVCKFGEKCKFHHPIDRS 425 (508)
Q Consensus 371 ~~~~~~~p~~s~~~~g~~p~~~p~r~k~~~C~~y~~~G~C~~G~~C~f~H~~~~~ 425 (508)
.......-+++.++..+.++.. ..+.....|.+.+...+.
T Consensus 189 --------------~~~~~q~~~~~~~~~~~~~~~~-~~~~k~~~~~~~~~~~~~ 228 (325)
T KOG1040|consen 189 --------------HQGSVQHPPQRQSQQPGKISGE-EKIHKLLQDKQLPQQHEE 228 (325)
T ss_pred --------------hccccCCCCCCCCcCccccccc-cccchhhhhhhhhHHHHH
Confidence 0001122244566777888884 778888888888765543
No 7
>KOG2494 consensus C3H1-type Zn-finger protein [Transcription]
Probab=99.23 E-value=1e-11 Score=125.47 Aligned_cols=211 Identities=27% Similarity=0.463 Sum_probs=123.1
Q ss_pred CCccccccCCCCCCCCC-CCCCCCCCcccCCCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCCcCCCCCCCCCCCCC
Q 040937 188 PDCPYFLKTQRCKFGSK-CKFNHPKDKLIGSSDSGNGDVSALPERPSEPPCAFYLKNGTCKFGATCKFDHPKDFQLPSVG 266 (508)
Q Consensus 188 ~~C~~f~~tG~C~~G~~-C~f~H~~~~~~~~~~~~~~~~~~~P~r~~~~~C~~f~ktG~C~~G~~C~F~H~~~~~~~~~~ 266 (508)
++||.|++ |.|++||. |+|.|+..... ++. -.-.-|.+|+| |.|. .++|+|.|+......
T Consensus 38 eVCReF~r-n~C~R~d~~CkfaHP~~~~~---V~~----------g~v~aC~Ds~k-grCs-R~nCkylHpp~hlkd--- 98 (331)
T KOG2494|consen 38 EVCREFLR-NTCSRGDRECKFAHPPKNCQ---VSN----------GRVIACFDSQK-GRCS-RENCKYLHPPQHLKD--- 98 (331)
T ss_pred HHHHHHHh-ccccCCCccccccCCCCCCC---ccC----------CeEEEEecccc-CccC-cccceecCCChhhhh---
Confidence 58999999 99999999 99999976431 110 12346999999 9999 888999998752100
Q ss_pred CCCCCccccccccccccccCcCCCCCcccccCcccccCCCCCCCCCCCCCCC--CCCCcccCCCC-CCCCCCCCCCCcCC
Q 040937 267 QENGIGEQNESVIKTDETTGLLNPGMSLFSHAPAMLHNSKGLPIRPGELDCP--FYLKTGSCKYG-STCRYNHPERTAIN 343 (508)
Q Consensus 267 ~~~~~~~q~~s~~~~~~~~g~~~~~~~~~~~~Pa~~~~s~~~P~rpg~~~C~--~y~ktG~Ck~G-~~Crf~Hp~~~~~~ 343 (508)
|. ..++.++.. .....-+.+..... -+++++|. .| .++-|.-| ..|+|.|.....
T Consensus 99 -------ql-------~ingrn~l~--lq~~~aA~~~q~~~---~~g~Pi~~v~~f-~~~~~~~g~~~~s~~~y~~~~-- 156 (331)
T KOG2494|consen 99 -------QL-------KINGRNNLI--LQKTAAAMLAQQMQ---GPGTPICSVPMF-ATGPCLGGNTACSYWPYLPPV-- 156 (331)
T ss_pred -------hh-------hhcccccHH--HHHHHHhhhccccc---CCCccccccccc-cccccccCCCccccccccCCC--
Confidence 00 011111110 00000011111111 15778888 44 56778765 479999975421
Q ss_pred CCCcccCCCcccCCccccCccccCCCcccccccCccccccccCCCCCCCCCCCCCcCchhhhcCCCCCCC-CCCCCCCCC
Q 040937 344 PPAAAIVHPLITSPAASLGISVVSPAASLYQTIDPRLAQATLGVSPSLYPQRPGQMECDYYMKTGVCKFG-EKCKFHHPI 422 (508)
Q Consensus 344 p~~~~~~~p~~~s~~~~~~~~~~~P~~~~~~~~~p~~s~~~~g~~p~~~p~r~k~~~C~~y~~~G~C~~G-~~C~f~H~~ 422 (508)
| .-.+ +....|..+.+-...|.+ ....++++..+....+.++|+. . .|.|.++ .+|.|+|+.
T Consensus 157 P-g~~v-------------p~~~~p~~~~~~~g~p~v-~~~~~~~~~k~~r~~~~e~~~~-~-~gn~~r~e~d~~f~~~~ 219 (331)
T KOG2494|consen 157 P-GGLV-------------PADGLPTTPVFVPGGPGV-PGPGLVGGQKLLRSDRLEVCRE-Q-RGNCRRGEQDAQFAHPA 219 (331)
T ss_pred C-CCCC-------------CCcCCCCCccccCCCCcc-cccccccccccccCCCCCCCcc-c-ccccccchhHHHHhhhh
Confidence 0 0000 001111111111111111 1123345566666778899999 3 5899888 789999998
Q ss_pred CccccCCCchhhhhhcccCCCCCCCCCCcccccCccccCCCCCCCCCCCC
Q 040937 423 DRSAAKTPSQETVKLTLAGLPRREGAVHCPYYMKTGTCKYGATCKFDHPP 472 (508)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~C~~y~~~G~C~fG~~C~f~H~~ 472 (508)
+.+......+ ...+|..+.+ |.|.- ++|++.|..
T Consensus 220 k~~~~~s~~~--------------t~~~~~~~t~-~~~~~-en~~~~~~~ 253 (331)
T KOG2494|consen 220 KSIMIDSNDN--------------TVEVCLRYTK-GRCET-ENCKYFHAP 253 (331)
T ss_pred hhhhcccCCC--------------cchhcccccc-ceech-hcccccCch
Confidence 7766432211 2567888888 88887 788888864
No 8
>COG5084 YTH1 Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only]
Probab=99.10 E-value=1.6e-09 Score=109.26 Aligned_cols=198 Identities=25% Similarity=0.496 Sum_probs=134.2
Q ss_pred cCccccccCCCCCCCCCCCccCCCCCCCCCCCCC--------------------CcccccccCCCCCCCC-CCCCccccc
Q 040937 136 KDCAYYMQTRTCKFGDTCKFDHPIWVPEGGIPDW--------------------KEVPVIASSESLPERP-GEPDCPYFL 194 (508)
Q Consensus 136 ~~C~~f~~tG~C~~G~~CkF~H~~~~~~gg~~~~--------------------~~~~~~~~~~~~p~r~-~~~~C~~f~ 194 (508)
.+|.+++ .|.|..+..|.+.|-......+-..| +....+....-.+.-+ .+..|.+++
T Consensus 3 ~~~~~~~-~g~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~qi~p~~s~~~f~n~~~l~~~~~~~~~~gn~~~~~~~~ 81 (285)
T COG5084 3 NVCSFAI-DGKCNLGSGCTYNHSNYTSLNDGLQSVSSKYMGAKQISPSLSSPTFKNKANLMQNTNDNFVPGNTVACISRN 81 (285)
T ss_pred chhhhhc-ccccccccccceeeeccccccccccchhhcccchhhcCccccccccccccccccccccccCcCccccccccc
Confidence 5899998 59999999999888643211100000 0001111111111111 345699998
Q ss_pred cCCCCCCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCCcCCCCCCCCCCCCCCCCCCccc
Q 040937 195 KTQRCKFGSKCKFNHPKDKLIGSSDSGNGDVSALPERPSEPPCAFYLKNGTCKFGATCKFDHPKDFQLPSVGQENGIGEQ 274 (508)
Q Consensus 195 ~tG~C~~G~~C~f~H~~~~~~~~~~~~~~~~~~~P~r~~~~~C~~f~ktG~C~~G~~C~F~H~~~~~~~~~~~~~~~~~q 274 (508)
..+.+.....|++.|..... ...++|++|+. |.|+.+..|.|+|..+..-
T Consensus 82 ~~~~~~~~~s~~~~~~~~~~-----------------~s~V~c~~~~~-g~c~s~~~c~~lh~~d~~~------------ 131 (285)
T COG5084 82 FNSIRGSRLSTPNNHVNPVL-----------------SSSVVCKFFLR-GLCKSGFSCEFLHEYDLRS------------ 131 (285)
T ss_pred ccCCccccccCCccccCccc-----------------cCCcccchhcc-ccCcCCCccccccCCCccc------------
Confidence 86666555589999975432 23578999998 9999999999999876420
Q ss_pred cccccccccccCcCCCCCcccccCcccccCCCCCCCCCCCCCCCCCCCcccCCCCCCCCCCCCCCCcCCCCCcccCCCcc
Q 040937 275 NESVIKTDETTGLLNPGMSLFSHAPAMLHNSKGLPIRPGELDCPFYLKTGSCKYGSTCRYNHPERTAINPPAAAIVHPLI 354 (508)
Q Consensus 275 ~~s~~~~~~~~g~~~~~~~~~~~~Pa~~~~s~~~P~rpg~~~C~~y~ktG~Ck~G~~Crf~Hp~~~~~~p~~~~~~~p~~ 354 (508)
.-.+.|++|...|.|..|..|.|.|.+....
T Consensus 132 -------------------------------------s~~~~c~~Fs~~G~cs~g~~c~~~h~dp~~~------------ 162 (285)
T COG5084 132 -------------------------------------SQGPPCRSFSLKGSCSSGPSCGYSHIDPDSF------------ 162 (285)
T ss_pred -------------------------------------ccCCCcccccccceeccCCCCCccccCcccc------------
Confidence 0124699997779999999999999873210
Q ss_pred cCCccccCccccCCCcccccccCccccccccCCCCCCCCCCCCCcCchhhhc--CCCCCCCCCCCCCCCCCccccCCCch
Q 040937 355 TSPAASLGISVVSPAASLYQTIDPRLAQATLGVSPSLYPQRPGQMECDYYMK--TGVCKFGEKCKFHHPIDRSAAKTPSQ 432 (508)
Q Consensus 355 ~s~~~~~~~~~~~P~~~~~~~~~p~~s~~~~g~~p~~~p~r~k~~~C~~y~~--~G~C~~G~~C~f~H~~~~~~~~~~~~ 432 (508)
...|.+|.. .+.|+.|..|++.|......
T Consensus 163 -------------------------------------------~~~~~~~~~~~~~f~p~g~~c~~~H~~~~~~------ 193 (285)
T COG5084 163 -------------------------------------------AGNCDQYSGATYGFCPLGASCKFSHTLKRVS------ 193 (285)
T ss_pred -------------------------------------------cccccccCcccccccCCCCcccccccccccc------
Confidence 124666663 59999999999999865322
Q ss_pred hhhhhcccCCCCCCCCCCcccccCccccCCCCC--------------CCCCCCCCCcc
Q 040937 433 ETVKLTLAGLPRREGAVHCPYYMKTGTCKYGAT--------------CKFDHPPPGEV 476 (508)
Q Consensus 433 ~~~~~~~~~~p~~~~~~~C~~y~~~G~C~fG~~--------------C~f~H~~p~~~ 476 (508)
.....|..|.. +.|+-|.. |.+.||.-...
T Consensus 194 -------------~~~~p~~~y~~-~fsP~g~~~~~~~~~~~~~~~~~~~~~ps~~~~ 237 (285)
T COG5084 194 -------------YGSSPCGNYTP-PFSPPGTPSESVSSWGYGKGTSCSLSHPSLNID 237 (285)
T ss_pred -------------ccccccccCcC-CcCCCCCCccccccccccccccccCCCccccCC
Confidence 11338999998 99999999 99999875443
No 9
>COG5063 CTH1 CCCH-type Zn-finger protein [General function prediction only]
Probab=98.99 E-value=2.1e-09 Score=107.57 Aligned_cols=215 Identities=16% Similarity=0.240 Sum_probs=130.8
Q ss_pred CCCCccccccCCCCCCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCCcCCCCCCCCCCC-
Q 040937 186 GEPDCPYFLKTQRCKFGSKCKFNHPKDKLIGSSDSGNGDVSALPERPSEPPCAFYLKNGTCKFGATCKFDHPKDFQLPS- 264 (508)
Q Consensus 186 ~~~~C~~f~~tG~C~~G~~C~f~H~~~~~~~~~~~~~~~~~~~P~r~~~~~C~~f~ktG~C~~G~~C~F~H~~~~~~~~- 264 (508)
++++|+.-...+.|++++.|.|+|..... ....++.+.++..|..|++-+.|.++.+|-|.|-....+..
T Consensus 114 kt~~l~ss~~~~~~~~p~~n~fahs~~is---------sl~~~~~K~kt~slev~in~~~vp~s~~~~~~slP~t~~~~q 184 (351)
T COG5063 114 KTEMLRSSTEIPYCRYPDKNPFAHSKAIS---------SLAQTHPKYKTESLEVFINPGYVPYSKRCCFISLPLTDINLQ 184 (351)
T ss_pred cchhhhccccccccccCCCCcCCCccccc---------cccccCccccccceeEEecCCccccccccccccccccccCcc
Confidence 56777765444789999999999986543 11223344567789999999999999999999977654321
Q ss_pred --CCCCCCCccccccccccccccCcCCCCCcccccCcccccCCCCCCCCCC-CCCCCCCCCcccCCC---CCCCCCC---
Q 040937 265 --VGQENGIGEQNESVIKTDETTGLLNPGMSLFSHAPAMLHNSKGLPIRPG-ELDCPFYLKTGSCKY---GSTCRYN--- 335 (508)
Q Consensus 265 --~~~~~~~~~q~~s~~~~~~~~g~~~~~~~~~~~~Pa~~~~s~~~P~rpg-~~~C~~y~ktG~Ck~---G~~Crf~--- 335 (508)
.+..+....+..+.. .+......|..+..... +..| .+.+-+ --+|.-|...|.|++ |+.|.|.
T Consensus 185 ~l~~rkpks~~~~~s~t--~~kes~a~P~~~~~~~~--~e~n---~~L~kt~~~lc~~ft~kg~~p~~~sG~~~q~a~~~ 257 (351)
T COG5063 185 PLSQRKPKSGKNCTSYT--LGKESDAHPHDELIYQK--QEQN---KPLYKTNPELCESFTRKGTCPYWISGVKCQFACRG 257 (351)
T ss_pred hhhccCcccCcCccccc--cccccccCchhhhhhhh--hhcc---chhhcCCHHHhhccCcCCCCccccccccccccccc
Confidence 111111111111100 00111111111110000 0001 111111 136999998899999 9999999
Q ss_pred CCCCCcCCCCCcccCCCcccCCccccCccccCCCcccccccCccccccccCCCCCCCCCCCCCcCchhhhcCCCCCCCCC
Q 040937 336 HPERTAINPPAAAIVHPLITSPAASLGISVVSPAASLYQTIDPRLAQATLGVSPSLYPQRPGQMECDYYMKTGVCKFGEK 415 (508)
Q Consensus 336 Hp~~~~~~p~~~~~~~p~~~s~~~~~~~~~~~P~~~~~~~~~p~~s~~~~g~~p~~~p~r~k~~~C~~y~~~G~C~~G~~ 415 (508)
|+-.. ..+ ..--+..+++.|..|.+.|.|++|..
T Consensus 258 HGlN~-l~~---------------------------------------------k~k~~~frTePcinwe~sGyc~yg~R 291 (351)
T COG5063 258 HGLNE-LKS---------------------------------------------KKKKQNFRTEPCINWEKSGYCPYGLR 291 (351)
T ss_pred ccccc-ccc---------------------------------------------cccccccccCCccchhhcccCccccc
Confidence 87331 100 00012245789999999999999999
Q ss_pred CCCCCCCCccccCCCchhhhhhcccCCCCCCCCCCcccccCccccCCCCCCCCCCCC
Q 040937 416 CKFHHPIDRSAAKTPSQETVKLTLAGLPRREGAVHCPYYMKTGTCKYGATCKFDHPP 472 (508)
Q Consensus 416 C~f~H~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~C~~y~~~G~C~fG~~C~f~H~~ 472 (508)
|.|.|.-+..... ...... ......|+-++.+|.|++|.+|.|.|.+
T Consensus 292 c~F~hgd~~~ie~------~~~~~~----~y~~~~crt~~~~g~~p~g~~~c~~~dk 338 (351)
T COG5063 292 CCFKHGDDSDIEM------YEEASL----GYLDGPCRTRAKGGAFPSGGAVCKSFDK 338 (351)
T ss_pred cccccCChhhccc------cccccc----cccccccccccccCccCCCCchhhcccc
Confidence 9999987654310 000001 1235789999999999999999999976
No 10
>COG5084 YTH1 Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only]
Probab=98.84 E-value=5.1e-08 Score=98.55 Aligned_cols=116 Identities=24% Similarity=0.471 Sum_probs=89.2
Q ss_pred CCcCccccccCCCCCCCCCCCccCCCCCCCCCCCCCCcccccccCCCCCCCCCCCCccccccCCCCCCCCCCCCCCCCCc
Q 040937 134 GEKDCAYYMQTRTCKFGDTCKFDHPIWVPEGGIPDWKEVPVIASSESLPERPGEPDCPYFLKTQRCKFGSKCKFNHPKDK 213 (508)
Q Consensus 134 ~~~~C~~f~~tG~C~~G~~CkF~H~~~~~~gg~~~~~~~~~~~~~~~~p~r~~~~~C~~f~~tG~C~~G~~C~f~H~~~~ 213 (508)
.+..|.+++.-+.+.....|.+.|...+ -...++|++|+. |.|+.+..|.|+|..+.
T Consensus 73 n~~~~~~~~~~~~~~~~~s~~~~~~~~~----------------------~~s~V~c~~~~~-g~c~s~~~c~~lh~~d~ 129 (285)
T COG5084 73 NTVACISRNFNSIRGSRLSTPNNHVNPV----------------------LSSSVVCKFFLR-GLCKSGFSCEFLHEYDL 129 (285)
T ss_pred cccccccccccCCccccccCCccccCcc----------------------ccCCcccchhcc-ccCcCCCccccccCCCc
Confidence 3457999987677777678999985311 012368999999 99999999999999765
Q ss_pred ccCCCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCCcCCCCCCCCCCCCCCCCCCccccccccccccccCcCCCCCc
Q 040937 214 LIGSSDSGNGDVSALPERPSEPPCAFYLKNGTCKFGATCKFDHPKDFQLPSVGQENGIGEQNESVIKTDETTGLLNPGMS 293 (508)
Q Consensus 214 ~~~~~~~~~~~~~~~P~r~~~~~C~~f~ktG~C~~G~~C~F~H~~~~~~~~~~~~~~~~~q~~s~~~~~~~~g~~~~~~~ 293 (508)
. ++-.+.|++|...|.|..|..|.+.|.++..
T Consensus 130 ~----------------~s~~~~c~~Fs~~G~cs~g~~c~~~h~dp~~-------------------------------- 161 (285)
T COG5084 130 R----------------SSQGPPCRSFSLKGSCSSGPSCGYSHIDPDS-------------------------------- 161 (285)
T ss_pred c----------------cccCCCcccccccceeccCCCCCccccCccc--------------------------------
Confidence 4 1125789999555999999999999987421
Q ss_pred ccccCcccccCCCCCCCCCCCCCCCCCCC--cccCCCCCCCCCCCCCC
Q 040937 294 LFSHAPAMLHNSKGLPIRPGELDCPFYLK--TGSCKYGSTCRYNHPER 339 (508)
Q Consensus 294 ~~~~~Pa~~~~s~~~P~rpg~~~C~~y~k--tG~Ck~G~~Crf~Hp~~ 339 (508)
....|.+|.. +|+|++|..|++.|...
T Consensus 162 -------------------~~~~~~~~~~~~~~f~p~g~~c~~~H~~~ 190 (285)
T COG5084 162 -------------------FAGNCDQYSGATYGFCPLGASCKFSHTLK 190 (285)
T ss_pred -------------------ccccccccCcccccccCCCCccccccccc
Confidence 1235777764 69999999999999875
No 11
>COG5063 CTH1 CCCH-type Zn-finger protein [General function prediction only]
Probab=98.76 E-value=1e-07 Score=95.64 Aligned_cols=240 Identities=19% Similarity=0.283 Sum_probs=143.7
Q ss_pred cccccccCcCCCcchhhcccccccccccc--CCCCCC-CCCCC--CCCCCCCcccccccccCccccCCCCcccccCCCCC
Q 040937 41 HLSESTLRYDPDHSIYDSFRYSGYLSSQA--QQPWPP-GVDPT--DHLKRPSEALYHPTLLGTHTSIGQSEAWYSTNSLA 115 (508)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~--~~~~r~~~~~~~~~~~g~~~~~g~~~~~~~~~~~~ 115 (508)
|+|-++.+=..+++|=+++|..-.|++-+ -.+|++ +..+. .|+--+ +.++-.++++ ..+.+.. ..|.-
T Consensus 65 ~~s~s~dn~~~ss~e~~q~~~~ssass~SP~~~pw~~~~~~a~~p~g~~kt-~~l~ss~~~~-~~~~p~~-n~fah---- 137 (351)
T COG5063 65 HLSASLDNKEQSSSEKRQKAEDSSASSNSPQNYPWSPRGSNANKPYGLYKT-EMLRSSTEIP-YCRYPDK-NPFAH---- 137 (351)
T ss_pred cccccccccccccccccccccccchhccCCcCCCCCCCCCCccCccccccc-hhhhcccccc-ccccCCC-CcCCC----
Confidence 56666667778888989999876666555 567776 33332 332211 1222333444 2222222 11111
Q ss_pred CCcccccCCCCCCCCCCCCCcCccccccCCCCCCCCCCCccCCCCCCCCCC------CCC----CcccccccCCC-----
Q 040937 116 KRPRIESASNLPVYPQRPGEKDCAYYMQTRTCKFGDTCKFDHPIWVPEGGI------PDW----KEVPVIASSES----- 180 (508)
Q Consensus 116 kr~r~e~~s~~~~~p~r~~~~~C~~f~~tG~C~~G~~CkF~H~~~~~~gg~------~~~----~~~~~~~~~~~----- 180 (508)
+. .++....-+.|.+++-|..|+--+.|+++.+|-|.|-.-+..+-. ++. ..+++......
T Consensus 138 --s~--~issl~~~~~K~kt~slev~in~~~vp~s~~~~~~slP~t~~~~q~l~~rkpks~~~~~s~t~~kes~a~P~~~ 213 (351)
T COG5063 138 --SK--AISSLAQTHPKYKTESLEVFINPGYVPYSKRCCFISLPLTDINLQPLSQRKPKSGKNCTSYTLGKESDAHPHDE 213 (351)
T ss_pred --cc--ccccccccCccccccceeEEecCCccccccccccccccccccCcchhhccCcccCcCccccccccccccCchhh
Confidence 11 222344456667778898888789999999999988532111100 000 00111100000
Q ss_pred --------CCCCCCC--CCccccccCCCCCC---CCCCCCC---CCCCcccCCCCCCCCCCCCCCCCCCCcccccccccC
Q 040937 181 --------LPERPGE--PDCPYFLKTQRCKF---GSKCKFN---HPKDKLIGSSDSGNGDVSALPERPSEPPCAFYLKNG 244 (508)
Q Consensus 181 --------~p~r~~~--~~C~~f~~tG~C~~---G~~C~f~---H~~~~~~~~~~~~~~~~~~~P~r~~~~~C~~f~ktG 244 (508)
...-+++ .+|.-|-..|.|++ |+.|.|. |...++... ..-...++.+|..|.+.|
T Consensus 214 ~~~~~~e~n~~L~kt~~~lc~~ft~kg~~p~~~sG~~~q~a~~~HGlN~l~~k---------~k~~~frTePcinwe~sG 284 (351)
T COG5063 214 LIYQKQEQNKPLYKTNPELCESFTRKGTCPYWISGVKCQFACRGHGLNELKSK---------KKKQNFRTEPCINWEKSG 284 (351)
T ss_pred hhhhhhhccchhhcCCHHHhhccCcCCCCcccccccccccccccccccccccc---------ccccccccCCccchhhcc
Confidence 0011133 68999999999999 9999999 987665111 111223567899999999
Q ss_pred CCCCCCCCcCCCCCCCCCCCCCCCCCCccccccccccccccCcCCCCCcccccCcccccCCCCCCCCCCCCCCCCCCCcc
Q 040937 245 TCKFGATCKFDHPKDFQLPSVGQENGIGEQNESVIKTDETTGLLNPGMSLFSHAPAMLHNSKGLPIRPGELDCPFYLKTG 324 (508)
Q Consensus 245 ~C~~G~~C~F~H~~~~~~~~~~~~~~~~~q~~s~~~~~~~~g~~~~~~~~~~~~Pa~~~~s~~~P~rpg~~~C~~y~ktG 324 (508)
.|.+|..|.|.|..+..+.....+ +.+| ....|+-+++.|
T Consensus 285 yc~yg~Rc~F~hgd~~~ie~~~~~------------------------------------~~~y----~~~~crt~~~~g 324 (351)
T COG5063 285 YCPYGLRCCFKHGDDSDIEMYEEA------------------------------------SLGY----LDGPCRTRAKGG 324 (351)
T ss_pred cCccccccccccCChhhccccccc------------------------------------cccc----cccccccccccC
Confidence 999999999999987654331100 0000 123599999999
Q ss_pred cCCCCCCCCCCCCCCC
Q 040937 325 SCKYGSTCRYNHPERT 340 (508)
Q Consensus 325 ~Ck~G~~Crf~Hp~~~ 340 (508)
.|+.|-+|.+.|.+..
T Consensus 325 ~~p~g~~~c~~~dkkn 340 (351)
T COG5063 325 AFPSGGAVCKSFDKKN 340 (351)
T ss_pred ccCCCCchhhccccch
Confidence 9999999999998763
No 12
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.73 E-value=1e-08 Score=106.41 Aligned_cols=226 Identities=17% Similarity=0.304 Sum_probs=122.9
Q ss_pred cccccccccCCCCCCCCCcCCCCCCC-CCCCCCCCCCCccccccccccccccCcCCCCCccc-----ccC--cccccCCC
Q 040937 235 PPCAFYLKNGTCKFGATCKFDHPKDF-QLPSVGQENGIGEQNESVIKTDETTGLLNPGMSLF-----SHA--PAMLHNSK 306 (508)
Q Consensus 235 ~~C~~f~ktG~C~~G~~C~F~H~~~~-~~~~~~~~~~~~~q~~s~~~~~~~~g~~~~~~~~~-----~~~--Pa~~~~s~ 306 (508)
.+|+||++ |.|++|+.|+|.|..+. .......+-.+......+ ......+.++.++.. ... +.....+.
T Consensus 9 tic~~~~~-g~c~~g~~cr~~h~~~~~~~~~~~~~~~s~~~~~~~--~~~~~~~~~~~~~~s~~~s~~~~~~~~~~~~s~ 85 (344)
T KOG1039|consen 9 TICKYYQK-GNCKFGDLCRLSHSLPDEEFATLLTPTTSSAAASTG--LSQSLIWANAVADASATMSVSSRPVLTAIRASS 85 (344)
T ss_pred hhhhhccc-ccccccceeeeeccCchhhccccccccccccccccc--cchhhcccchhhccccccchhcccchhhhhhhh
Confidence 79999999 99999999999999873 111100000000000000 000000111100000 000 00111111
Q ss_pred CCCCCCCCCCCCCCCCcccCCCCCCCCCCCCCCCcCCCCCcccCCCcccCCcccc-CccccCCCcccccccCcccccccc
Q 040937 307 GLPIRPGELDCPFYLKTGSCKYGSTCRYNHPERTAINPPAAAIVHPLITSPAASL-GISVVSPAASLYQTIDPRLAQATL 385 (508)
Q Consensus 307 ~~P~rpg~~~C~~y~ktG~Ck~G~~Crf~Hp~~~~~~p~~~~~~~p~~~s~~~~~-~~~~~~P~~~~~~~~~p~~s~~~~ 385 (508)
..-.--..++|.+ ++.|.|.+|..|.+.|.....+ ......+|+...+..+. ..+. .... ..
T Consensus 86 ~~~~~s~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~--c~l~~~~pi~~~~~~~~~~~~~-----~~~~---------~~ 148 (344)
T KOG1039|consen 86 SISEPSSTQENPY-SNHGQCRFGNGDVTLNGNNPES--CGLGTQHPICKRQYKNSMKRGS-----SCAL---------SS 148 (344)
T ss_pred ccccccccccCcc-ccccccccCCcccccccccccc--cccccccchhHHHHhhhhcccc-----cccc---------hH
Confidence 1111123467875 4569999999999999754332 12233444443322221 0000 0000 01
Q ss_pred CCCCCCCCCCCCCcCchhhhcCCCCCC------C--CCCCCCCCCCccccCCC--c------------------------
Q 040937 386 GVSPSLYPQRPGQMECDYYMKTGVCKF------G--EKCKFHHPIDRSAAKTP--S------------------------ 431 (508)
Q Consensus 386 g~~p~~~p~r~k~~~C~~y~~~G~C~~------G--~~C~f~H~~~~~~~~~~--~------------------------ 431 (508)
.+.-.+.+++.+.++|.+.|....++. | ++|.+.+.+..++.+.. +
T Consensus 149 ~~e~~~a~~~s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~~v~pS~~ 228 (344)
T KOG1039|consen 149 AMERSFALQKSSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSSFVNPSSF 228 (344)
T ss_pred hhhhccCcCccccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCccccccccce
Confidence 112245566788899999998777665 4 78999988888874320 0
Q ss_pred ----hhhhhhcccCCCCCCCCCCcccccC-ccccCCCCCCCCCCCCCCcccccc
Q 040937 432 ----QETVKLTLAGLPRREGAVHCPYYMK-TGTCKYGATCKFDHPPPGEVMAIS 480 (508)
Q Consensus 432 ----~~~~~~~~~~~p~~~~~~~C~~y~~-~G~C~fG~~C~f~H~~p~~~~~~~ 480 (508)
.++...++..+...++.+.|.||.+ .|.|+||..|.|.|-.|.+.....
T Consensus 229 Wv~t~~~k~~li~e~~~~~s~~~c~yf~~~~g~cPf~s~~~y~h~~~~~~~~~~ 282 (344)
T KOG1039|consen 229 WVETKEEKQKLIEEYEAEMSAKDCKYFSQGLGSCPFGSKCFYKHLLPSGASTDP 282 (344)
T ss_pred eeeecccccccHHHHHHHhhccchhhhcCCCCCCCCCCcccccccccccccccc
Confidence 0122234444555678899999986 579999999999999998875544
No 13
>KOG4791 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.60 E-value=2.1e-08 Score=105.41 Aligned_cols=136 Identities=23% Similarity=0.402 Sum_probs=86.0
Q ss_pred cCccccccCCCCCCCCCCCccCCCCCCCCCCCCCCcccccccCCCCCCCCCCCCccccccCCCCCCCCCCCCCCCCCccc
Q 040937 136 KDCAYYMQTRTCKFGDTCKFDHPIWVPEGGIPDWKEVPVIASSESLPERPGEPDCPYFLKTQRCKFGSKCKFNHPKDKLI 215 (508)
Q Consensus 136 ~~C~~f~~tG~C~~G~~CkF~H~~~~~~gg~~~~~~~~~~~~~~~~p~r~~~~~C~~f~~tG~C~~G~~C~f~H~~~~~~ 215 (508)
.+|.||+. ..|++++.|.|.|...- +....+|++|+..-.|+. .|+|.|..-..
T Consensus 4 ~dcyff~y-s~cKk~d~c~~rh~E~a----------------------l~n~t~C~~w~~~~~C~k--~C~YRHSe~~~- 57 (667)
T KOG4791|consen 4 EDCYFFFY-STCKKGDSCPFRHCEAA----------------------LGNETVCTLWQEGRCCRK--VCRYRHSEIDK- 57 (667)
T ss_pred ccchhhhh-hhhhccCcCcchhhHHH----------------------hcCcchhhhhhhcCcccc--cccchhhHHhh-
Confidence 58999985 89999999999996421 012258999999545654 99999986443
Q ss_pred CCCCCCCCCCCCCCCCCCCcccccccccCC-CCCCCCCcCCCCCCC--C-CCCCCCCCCCccccccccccccccCcCCCC
Q 040937 216 GSSDSGNGDVSALPERPSEPPCAFYLKNGT-CKFGATCKFDHPKDF--Q-LPSVGQENGIGEQNESVIKTDETTGLLNPG 291 (508)
Q Consensus 216 ~~~~~~~~~~~~~P~r~~~~~C~~f~ktG~-C~~G~~C~F~H~~~~--~-~~~~~~~~~~~~q~~s~~~~~~~~g~~~~~ 291 (508)
-.....|.||++ +. |. .++|-|.|..+. . ++..+-++.-.++.. .++
T Consensus 58 ---------------kr~e~~CYwe~~-p~gC~-k~~CgfRH~~pPLkg~l~~~p~~pe~ev~~~------~~S------ 108 (667)
T KOG4791|consen 58 ---------------KRSEIPCYWENQ-PTGCQ-KLNCGFRHNRPPLKGVLPTVPESPEEEVKAS------QLS------ 108 (667)
T ss_pred ---------------hcCcccceeecC-CCccC-CCccccccCCCchhhhccCCCCCcccccccc------ccc------
Confidence 014578999998 76 99 899999995521 1 111000000001100 000
Q ss_pred CcccccCcccccCCCCCCCCCCCCCCCCCCCcccCCCCCCCCCCCCCCC
Q 040937 292 MSLFSHAPAMLHNSKGLPIRPGELDCPFYLKTGSCKYGSTCRYNHPERT 340 (508)
Q Consensus 292 ~~~~~~~Pa~~~~s~~~P~rpg~~~C~~y~ktG~Ck~G~~Crf~Hp~~~ 340 (508)
|+...-.. .-..|-||+| +.|..+|.|-|.|+.++
T Consensus 109 --------Aq~~sV~~-----~p~P~l~~~K-~~e~~~D~~s~Lh~P~A 143 (667)
T KOG4791|consen 109 --------AQQNSVQS-----NPSPQLRSVK-KVESSEDVPSPLHPPVA 143 (667)
T ss_pred --------CCCccccc-----CCchHHHHhh-hhhhhccccccCCCCcc
Confidence 00000000 1135889988 99999999999998754
No 14
>KOG2494 consensus C3H1-type Zn-finger protein [Transcription]
Probab=98.51 E-value=1.5e-07 Score=95.69 Aligned_cols=102 Identities=26% Similarity=0.517 Sum_probs=67.6
Q ss_pred cCccccccCCCCCCCCC-CCccCCCCCCCCCCCCCCcccccccCCCCCCCCCCCCccccccCCCCCCCCCCCCCCCCCcc
Q 040937 136 KDCAYYMQTRTCKFGDT-CKFDHPIWVPEGGIPDWKEVPVIASSESLPERPGEPDCPYFLKTQRCKFGSKCKFNHPKDKL 214 (508)
Q Consensus 136 ~~C~~f~~tG~C~~G~~-CkF~H~~~~~~gg~~~~~~~~~~~~~~~~p~r~~~~~C~~f~~tG~C~~G~~C~f~H~~~~~ 214 (508)
++||-|++ |.|++||. |||+|+..... +.+ -+...|..|++ |+|.+ ++|+|+|...++
T Consensus 38 eVCReF~r-n~C~R~d~~CkfaHP~~~~~-----V~~-------------g~v~aC~Ds~k-grCsR-~nCkylHpp~hl 96 (331)
T KOG2494|consen 38 EVCREFLR-NTCSRGDRECKFAHPPKNCQ-----VSN-------------GRVIACFDSQK-GRCSR-ENCKYLHPPQHL 96 (331)
T ss_pred HHHHHHHh-ccccCCCccccccCCCCCCC-----ccC-------------CeEEEEecccc-CccCc-ccceecCCChhh
Confidence 79999998 99999998 99999864321 111 12246999999 99975 789999998765
Q ss_pred cCCC---CCCC--------CCCCCCCCCCCCcccc--cccccCCCCCC-CCCcCCCCCC
Q 040937 215 IGSS---DSGN--------GDVSALPERPSEPPCA--FYLKNGTCKFG-ATCKFDHPKD 259 (508)
Q Consensus 215 ~~~~---~~~~--------~~~~~~P~r~~~~~C~--~f~ktG~C~~G-~~C~F~H~~~ 259 (508)
...- .... .-.......+.+++|. .|.- +.|.-| ..|+|.|...
T Consensus 97 kdql~ingrn~l~lq~~~aA~~~q~~~~~g~Pi~~v~~f~~-~~~~~g~~~~s~~~y~~ 154 (331)
T KOG2494|consen 97 KDQLKINGRNNLILQKTAAAMLAQQMQGPGTPICSVPMFAT-GPCLGGNTACSYWPYLP 154 (331)
T ss_pred hhhhhhcccccHHHHHHHHhhhcccccCCCccccccccccc-cccccCCCccccccccC
Confidence 2110 0000 0000112225678888 6664 788866 4699998765
No 15
>KOG4791 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.19 E-value=9.3e-07 Score=93.26 Aligned_cols=141 Identities=20% Similarity=0.357 Sum_probs=86.6
Q ss_pred CCccccccCCCCCCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCCcCCCCCCCCCCCCCC
Q 040937 188 PDCPYFLKTQRCKFGSKCKFNHPKDKLIGSSDSGNGDVSALPERPSEPPCAFYLKNGTCKFGATCKFDHPKDFQLPSVGQ 267 (508)
Q Consensus 188 ~~C~~f~~tG~C~~G~~C~f~H~~~~~~~~~~~~~~~~~~~P~r~~~~~C~~f~ktG~C~~G~~C~F~H~~~~~~~~~~~ 267 (508)
+.|.+|+. -.|++++.|.|.|...-. .....|.+|+. +.|- .+.|+|.|..-...
T Consensus 4 ~dcyff~y-s~cKk~d~c~~rh~E~al-----------------~n~t~C~~w~~-~~~C-~k~C~YRHSe~~~k----- 58 (667)
T KOG4791|consen 4 EDCYFFFY-STCKKGDSCPFRHCEAAL-----------------GNETVCTLWQE-GRCC-RKVCRYRHSEIDKK----- 58 (667)
T ss_pred ccchhhhh-hhhhccCcCcchhhHHHh-----------------cCcchhhhhhh-cCcc-cccccchhhHHhhh-----
Confidence 57999988 789999999999987544 23578999998 5544 34999999763210
Q ss_pred CCCCccccccccccccccCcCCCCCcccccCcccccCCCCCCCCCCCCCCCCCCCcccCCCCCCCCCCCCCCCcCCCCCc
Q 040937 268 ENGIGEQNESVIKTDETTGLLNPGMSLFSHAPAMLHNSKGLPIRPGELDCPFYLKTGSCKYGSTCRYNHPERTAINPPAA 347 (508)
Q Consensus 268 ~~~~~~q~~s~~~~~~~~g~~~~~~~~~~~~Pa~~~~s~~~P~rpg~~~C~~y~ktG~Ck~G~~Crf~Hp~~~~~~p~~~ 347 (508)
..+-+|.|+.+..-|. .++|-|.|.....- .+
T Consensus 59 --------------------------------------------r~e~~CYwe~~p~gC~-k~~CgfRH~~pPLk---g~ 90 (667)
T KOG4791|consen 59 --------------------------------------------RSEIPCYWENQPTGCQ-KLNCGFRHNRPPLK---GV 90 (667)
T ss_pred --------------------------------------------cCcccceeecCCCccC-CCccccccCCCchh---hh
Confidence 0234799999833496 59999999542110 11
Q ss_pred ccCCCcccCCccccCccccCCCcccccccCccccccccCCCCCCCCCCCCCcCchhhhcCCCCCCCCCCCCCCCCCcc
Q 040937 348 AIVHPLITSPAASLGISVVSPAASLYQTIDPRLAQATLGVSPSLYPQRPGQMECDYYMKTGVCKFGEKCKFHHPIDRS 425 (508)
Q Consensus 348 ~~~~p~~~s~~~~~~~~~~~P~~~~~~~~~p~~s~~~~g~~p~~~p~r~k~~~C~~y~~~G~C~~G~~C~f~H~~~~~ 425 (508)
+.+.|..+. .. +..+ +...+.. .+ ..-...|-+|.+ ++|..++.|-|.|+....
T Consensus 91 l~~~p~~pe--~e----v~~~-----~~SAq~~---sV---------~~~p~P~l~~~K-~~e~~~D~~s~Lh~P~A~ 144 (667)
T KOG4791|consen 91 LPTVPESPE--EE----VKAS-----QLSAQQN---SV---------QSNPSPQLRSVK-KVESSEDVPSPLHPPVAI 144 (667)
T ss_pred ccCCCCCcc--cc----cccc-----cccCCCc---cc---------ccCCchHHHHhh-hhhhhccccccCCCCccc
Confidence 111111100 00 0000 0000000 00 111247999996 999999999999988443
No 16
>PF00642 zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and similar); InterPro: IPR000571 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents C-x8-C-x5-C-x3-H (CCCH) type Zinc finger (Znf) domains. Proteins containing CCCH Znf domains include Znf proteins from eukaryotes involved in cell cycle or growth phase-related regulation, e.g. human TIS11B (butyrate response factor 1), a probable regulatory protein involved in regulating the response to growth factors, and the mouse TTP growth factor-inducible nuclear protein, which has the same function. The mouse TTP protein is induced by growth factors. Another protein containing this domain is the human splicing factor U2AF 35kDa subunit, which plays a critical role in both constitutive and enhancer-dependent splicing by mediating essential protein-protein interactions and protein-RNA interactions required for 3' splice site selection. It has been shown that different CCCH-type Znf proteins interact with the 3'-untranslated region of various mRNA [, ]. This type of Znf is very often present in two copies. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding; PDB: 1M9O_A 1RGO_A 2CQE_A 2FC6_A 2D9M_A 2E5S_A 2RHK_C 2D9N_A 3D2S_A 3D2Q_C ....
Probab=98.10 E-value=5.3e-07 Score=59.76 Aligned_cols=25 Identities=40% Similarity=1.105 Sum_probs=20.6
Q ss_pred CCCCcccccCccccCCCCCCCCCCC
Q 040937 447 GAVHCPYYMKTGTCKYGATCKFDHP 471 (508)
Q Consensus 447 ~~~~C~~y~~~G~C~fG~~C~f~H~ 471 (508)
++.+|++|+++|.|+||++|+|.|+
T Consensus 2 k~~~C~~f~~~g~C~~G~~C~f~H~ 26 (27)
T PF00642_consen 2 KTKLCRFFMRTGTCPFGDKCRFAHG 26 (27)
T ss_dssp TSSB-HHHHHTS--TTGGGSSSBSS
T ss_pred ccccChhhccCCccCCCCCcCccCC
Confidence 5789999999999999999999997
No 17
>PF00642 zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and similar); InterPro: IPR000571 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents C-x8-C-x5-C-x3-H (CCCH) type Zinc finger (Znf) domains. Proteins containing CCCH Znf domains include Znf proteins from eukaryotes involved in cell cycle or growth phase-related regulation, e.g. human TIS11B (butyrate response factor 1), a probable regulatory protein involved in regulating the response to growth factors, and the mouse TTP growth factor-inducible nuclear protein, which has the same function. The mouse TTP protein is induced by growth factors. Another protein containing this domain is the human splicing factor U2AF 35kDa subunit, which plays a critical role in both constitutive and enhancer-dependent splicing by mediating essential protein-protein interactions and protein-RNA interactions required for 3' splice site selection. It has been shown that different CCCH-type Znf proteins interact with the 3'-untranslated region of various mRNA [, ]. This type of Znf is very often present in two copies. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding; PDB: 1M9O_A 1RGO_A 2CQE_A 2FC6_A 2D9M_A 2E5S_A 2RHK_C 2D9N_A 3D2S_A 3D2Q_C ....
Probab=98.06 E-value=1e-06 Score=58.43 Aligned_cols=25 Identities=48% Similarity=1.112 Sum_probs=20.3
Q ss_pred CCcCccccccCCCCCCCCCCCccCC
Q 040937 134 GEKDCAYYMQTRTCKFGDTCKFDHP 158 (508)
Q Consensus 134 ~~~~C~~f~~tG~C~~G~~CkF~H~ 158 (508)
++++|++|+++|.|++|++|+|+|+
T Consensus 2 k~~~C~~f~~~g~C~~G~~C~f~H~ 26 (27)
T PF00642_consen 2 KTKLCRFFMRTGTCPFGDKCRFAHG 26 (27)
T ss_dssp TSSB-HHHHHTS--TTGGGSSSBSS
T ss_pred ccccChhhccCCccCCCCCcCccCC
Confidence 4679999999999999999999996
No 18
>KOG1595 consensus CCCH-type Zn-finger protein [General function prediction only]
Probab=98.02 E-value=2e-05 Score=85.05 Aligned_cols=58 Identities=29% Similarity=0.628 Sum_probs=48.0
Q ss_pred CcCchhhhcCCCCCCCCCCCCCCCCCccccCCCchhhhhhcccCCCCCCCCCCcccccCccccCCCCCCCCCCCCCC
Q 040937 398 QMECDYYMKTGVCKFGEKCKFHHPIDRSAAKTPSQETVKLTLAGLPRREGAVHCPYYMKTGTCKYGATCKFDHPPPG 474 (508)
Q Consensus 398 ~~~C~~y~~~G~C~~G~~C~f~H~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~C~~y~~~G~C~fG~~C~f~H~~p~ 474 (508)
-..|..|.+ |.|+.||.|.|+|...+.- + .|.++++..|+.- |.|+. .-|+|+|.+.+
T Consensus 236 ~tpCPefrk-G~C~rGD~CEyaHgvfEcw----------L----HPa~YRT~~CkDg---~~C~R-rvCfFAH~~eq 293 (528)
T KOG1595|consen 236 STPCPEFRK-GSCERGDSCEYAHGVFECW----------L----HPARYRTRKCKDG---GYCPR-RVCFFAHSPEQ 293 (528)
T ss_pred CccCccccc-CCCCCCCccccccceehhh----------c----CHHHhccccccCC---CCCcc-ceEeeecChHH
Confidence 468999996 9999999999999976533 1 4567779999987 88999 89999997543
No 19
>KOG1763 consensus Uncharacterized conserved protein, contains CCCH-type Zn-finger [General function prediction only]
Probab=97.83 E-value=3.7e-06 Score=84.26 Aligned_cols=83 Identities=28% Similarity=0.687 Sum_probs=59.8
Q ss_pred CCCCcCchhhhcCCCCCCCCCCCCCCCCCccccCCC---------c------hhhhhhcccCCCCCCCCCCcccccC---
Q 040937 395 RPGQMECDYYMKTGVCKFGEKCKFHHPIDRSAAKTP---------S------QETVKLTLAGLPRREGAVHCPYYMK--- 456 (508)
Q Consensus 395 r~k~~~C~~y~~~G~C~~G~~C~f~H~~~~~~~~~~---------~------~~~~~~~~~~~p~~~~~~~C~~y~~--- 456 (508)
+++..+|-+|. .|.|..|+.|+|+|++...+...- + ...+++.--+-|.-....+|.||+.
T Consensus 89 DPKSvvCafFk-~g~C~KG~kCKFsHdl~~~~k~eK~dly~d~rdemWD~~kl~~vv~~K~~k~k~~tdiVCKfFLeAvE 167 (343)
T KOG1763|consen 89 DPKSVVCAFFK-QGTCTKGDKCKFSHDLAVERKKEKIDLYPDTRDEMWDEEKLEEVVLKKHGKPKPTTDIVCKFFLEAVE 167 (343)
T ss_pred CchHHHHHHHh-ccCCCCCCcccccchHHHhhhccchhccccchhhhhhHHHHHHHHHhhccCCCCchhHHHHHHHHHHh
Confidence 57889999999 599999999999999876653211 0 1123333334444445678999964
Q ss_pred ---cc---ccCCCC-CCCCCCCCCCcccc
Q 040937 457 ---TG---TCKYGA-TCKFDHPPPGEVMA 478 (508)
Q Consensus 457 ---~G---~C~fG~-~C~f~H~~p~~~~~ 478 (508)
+| .|++|. .|.|.|-+|.+.+.
T Consensus 168 ~~kYGWfW~CPnGg~~C~YrHaLP~GyVL 196 (343)
T KOG1763|consen 168 NGKYGWFWECPNGGDKCIYRHALPEGYVL 196 (343)
T ss_pred cCCccceeECCCCCCeeeeeecCCcchhh
Confidence 45 899975 89999999988644
No 20
>KOG1595 consensus CCCH-type Zn-finger protein [General function prediction only]
Probab=97.68 E-value=3.5e-05 Score=83.18 Aligned_cols=83 Identities=25% Similarity=0.448 Sum_probs=62.8
Q ss_pred CCCCCCCCCccCCCCCCCCCCCCCCcccccccCCCCCCCC--CCCCccccccCCCCCCCCCCCCCCCCCcccCCCCCCCC
Q 040937 146 TCKFGDTCKFDHPIWVPEGGIPDWKEVPVIASSESLPERP--GEPDCPYFLKTQRCKFGSKCKFNHPKDKLIGSSDSGNG 223 (508)
Q Consensus 146 ~C~~G~~CkF~H~~~~~~gg~~~~~~~~~~~~~~~~p~r~--~~~~C~~f~~tG~C~~G~~C~f~H~~~~~~~~~~~~~~ 223 (508)
.|.-+..|.|+|+-.+ .+...|.|+ .-+.|.-|-+ |.|++||.|.|.|..-+.
T Consensus 208 ~shDwteCPf~HpgEk---------------ARRRDPRkyhYs~tpCPefrk-G~C~rGD~CEyaHgvfEc--------- 262 (528)
T KOG1595|consen 208 RSHDWTECPFAHPGEK---------------ARRRDPRKYHYSSTPCPEFRK-GSCERGDSCEYAHGVFEC--------- 262 (528)
T ss_pred cCCCcccCCccCCCcc---------------cccCCcccccccCccCccccc-CCCCCCCccccccceehh---------
Confidence 4556689999996432 122234433 3468999998 999999999999987654
Q ss_pred CCCCCCCCCCCcccccccccCCCCCCCCCcCCCCCC
Q 040937 224 DVSALPERPSEPPCAFYLKNGTCKFGATCKFDHPKD 259 (508)
Q Consensus 224 ~~~~~P~r~~~~~C~~f~ktG~C~~G~~C~F~H~~~ 259 (508)
---|+++++..|++= |.|++ .-|-|+|...
T Consensus 263 --wLHPa~YRT~~CkDg---~~C~R-rvCfFAH~~e 292 (528)
T KOG1595|consen 263 --WLHPARYRTRKCKDG---GYCPR-RVCFFAHSPE 292 (528)
T ss_pred --hcCHHHhccccccCC---CCCcc-ceEeeecChH
Confidence 234778888999997 78996 9999999875
No 21
>COG5252 Uncharacterized conserved protein, contains CCCH-type Zn-finger protein [General function prediction only]
Probab=97.58 E-value=1.5e-05 Score=77.82 Aligned_cols=93 Identities=23% Similarity=0.431 Sum_probs=63.4
Q ss_pred CCCCCcCchhhhcCCCCCCCCCCCCCCCCCccccCCC----chhhhhhcccC---CCCCCCCCCcccccC------cc--
Q 040937 394 QRPGQMECDYYMKTGVCKFGEKCKFHHPIDRSAAKTP----SQETVKLTLAG---LPRREGAVHCPYYMK------TG-- 458 (508)
Q Consensus 394 ~r~k~~~C~~y~~~G~C~~G~~C~f~H~~~~~~~~~~----~~~~~~~~~~~---~p~~~~~~~C~~y~~------~G-- 458 (508)
..++.++|-.|. .+.|..|+.|+|+|.....+...- ++......... .|.-....+|.||+. +|
T Consensus 81 vdpK~~vcalF~-~~~c~kg~~ckF~h~~ee~r~~eK~DLYsDvRd~~ed~pl~krP~intd~VCkffieA~e~GkYgw~ 159 (299)
T COG5252 81 VDPKTVVCALFL-NKTCAKGDACKFAHGKEEARKTEKPDLYSDVRDKEEDVPLGKRPWINTDRVCKFFIEAMESGKYGWG 159 (299)
T ss_pred cCchhHHHHHhc-cCccccCchhhhhcchHHHhhhcccchhhhhhhhhccCCcccCCCCChhHHHHHHHHHHhcCCccce
Confidence 457899999999 699999999999999776663221 11111111122 233234578999964 33
Q ss_pred -ccCCC-CCCCCCCCCCCcccccccCCCCCc
Q 040937 459 -TCKYG-ATCKFDHPPPGEVMAISALDGTST 487 (508)
Q Consensus 459 -~C~fG-~~C~f~H~~p~~~~~~~~s~~~s~ 487 (508)
.|++| ++|.|.|.+|.+.+-....+.-++
T Consensus 160 W~CPng~~~C~y~H~Lp~GyVLsrdk~Kd~t 190 (299)
T COG5252 160 WTCPNGNMRCSYIHKLPDGYVLSRDKIKDST 190 (299)
T ss_pred eeCCCCCceeeeeeccCccceeccccccccc
Confidence 89997 799999999998766555544443
No 22
>smart00356 ZnF_C3H1 zinc finger.
Probab=97.53 E-value=6.4e-05 Score=49.06 Aligned_cols=25 Identities=44% Similarity=1.092 Sum_probs=21.8
Q ss_pred CCCCcccccCccccCCCCCCCCCCCC
Q 040937 447 GAVHCPYYMKTGTCKYGATCKFDHPP 472 (508)
Q Consensus 447 ~~~~C~~y~~~G~C~fG~~C~f~H~~ 472 (508)
++.+|++| ++|.|++|++|+|.|..
T Consensus 3 k~~~C~~~-~~g~C~~g~~C~~~H~~ 27 (27)
T smart00356 3 KTELCKFF-KRGYCPYGDRCKFAHPL 27 (27)
T ss_pred CCCcCcCc-cCCCCCCCCCcCCCCcC
Confidence 46789999 55999999999999973
No 23
>KOG3702 consensus Nuclear polyadenylated RNA binding protein [RNA processing and modification]
Probab=97.51 E-value=0.00094 Score=73.75 Aligned_cols=22 Identities=32% Similarity=0.810 Sum_probs=18.1
Q ss_pred cccccccccCCCCCCCCCcCCCCCCC
Q 040937 235 PPCAFYLKNGTCKFGATCKFDHPKDF 260 (508)
Q Consensus 235 ~~C~~f~ktG~C~~G~~C~F~H~~~~ 260 (508)
..|++|.. |. ++.|.|.|+...
T Consensus 545 ~~Cky~~~---Ct-~a~Ce~~HPtaa 566 (681)
T KOG3702|consen 545 TRCKYGPA---CT-SAECEFAHPTAA 566 (681)
T ss_pred ccccCCCc---CC-chhhhhcCCcch
Confidence 57999987 88 899999997753
No 24
>smart00356 ZnF_C3H1 zinc finger.
Probab=97.44 E-value=0.0001 Score=48.14 Aligned_cols=25 Identities=36% Similarity=0.983 Sum_probs=21.5
Q ss_pred CCCCccccccCCCCCCCCCCCCCCCC
Q 040937 186 GEPDCPYFLKTQRCKFGSKCKFNHPK 211 (508)
Q Consensus 186 ~~~~C~~f~~tG~C~~G~~C~f~H~~ 211 (508)
++.+|++|.+ |.|.+|++|+|+|+.
T Consensus 3 k~~~C~~~~~-g~C~~g~~C~~~H~~ 27 (27)
T smart00356 3 KTELCKFFKR-GYCPYGDRCKFAHPL 27 (27)
T ss_pred CCCcCcCccC-CCCCCCCCcCCCCcC
Confidence 4568999955 999999999999973
No 25
>KOG2333 consensus Uncharacterized conserved protein [General function prediction only]
Probab=97.37 E-value=6.6e-05 Score=80.15 Aligned_cols=60 Identities=28% Similarity=0.695 Sum_probs=49.0
Q ss_pred CCcCchhhhcC--CCCCCCCCCCCCCCCCccccCCCchhhhhhcccCCCCCCCCCCcccccCccccCCCCCCCCCC
Q 040937 397 GQMECDYYMKT--GVCKFGEKCKFHHPIDRSAAKTPSQETVKLTLAGLPRREGAVHCPYYMKTGTCKYGATCKFDH 470 (508)
Q Consensus 397 k~~~C~~y~~~--G~C~~G~~C~f~H~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~C~~y~~~G~C~fG~~C~f~H 470 (508)
...+|+-.... ..|.||++|+|.|+.+...+....+. ...|+.|...|.|+||-+|||.-
T Consensus 75 ~n~LCPsli~g~~~~C~f~d~Crf~HDi~ayLatK~~Di--------------g~~Cp~f~s~G~Cp~G~~CRFl~ 136 (614)
T KOG2333|consen 75 QNRLCPSLIQGDISKCSFGDNCRFVHDIEAYLATKAPDI--------------GPSCPVFESLGFCPYGFKCRFLG 136 (614)
T ss_pred hhccChHhhcCCCccCcccccccccccHHHHHhccCccc--------------CCccceeeccccCCccceeehhh
Confidence 35689998875 47999999999999987765443332 46799999999999999999974
No 26
>KOG1763 consensus Uncharacterized conserved protein, contains CCCH-type Zn-finger [General function prediction only]
Probab=97.01 E-value=0.00013 Score=73.43 Aligned_cols=78 Identities=26% Similarity=0.540 Sum_probs=50.4
Q ss_pred CCCCCCCCccccccCCCCCCCCCCCCCCCCCcccCCCCCC----CCCC--------------CCCCCCCCCcccccccc-
Q 040937 182 PERPGEPDCPYFLKTQRCKFGSKCKFNHPKDKLIGSSDSG----NGDV--------------SALPERPSEPPCAFYLK- 242 (508)
Q Consensus 182 p~r~~~~~C~~f~~tG~C~~G~~C~f~H~~~~~~~~~~~~----~~~~--------------~~~P~r~~~~~C~~f~k- 242 (508)
...+++.+|.+|.. |.|..|+.|+|+|+........... ..+. .+.|......+|+||+-
T Consensus 87 gvDPKSvvCafFk~-g~C~KG~kCKFsHdl~~~~k~eK~dly~d~rdemWD~~kl~~vv~~K~~k~k~~tdiVCKfFLeA 165 (343)
T KOG1763|consen 87 GVDPKSVVCAFFKQ-GTCTKGDKCKFSHDLAVERKKEKIDLYPDTRDEMWDEEKLEEVVLKKHGKPKPTTDIVCKFFLEA 165 (343)
T ss_pred CCCchHHHHHHHhc-cCCCCCCcccccchHHHhhhccchhccccchhhhhhHHHHHHHHHhhccCCCCchhHHHHHHHHH
Confidence 34557789999998 9999999999999986542111000 0000 01111123458999984
Q ss_pred -----cC---CCCCCC-CCcCCCCCCC
Q 040937 243 -----NG---TCKFGA-TCKFDHPKDF 260 (508)
Q Consensus 243 -----tG---~C~~G~-~C~F~H~~~~ 260 (508)
.| .|++|- .|.|.|-.+.
T Consensus 166 vE~~kYGWfW~CPnGg~~C~YrHaLP~ 192 (343)
T KOG1763|consen 166 VENGKYGWFWECPNGGDKCIYRHALPE 192 (343)
T ss_pred HhcCCccceeECCCCCCeeeeeecCCc
Confidence 22 599875 8999998763
No 27
>KOG3702 consensus Nuclear polyadenylated RNA binding protein [RNA processing and modification]
Probab=96.32 E-value=0.015 Score=64.47 Aligned_cols=21 Identities=33% Similarity=0.846 Sum_probs=16.6
Q ss_pred CcCccccccCCCCCCCCCCCccCCC
Q 040937 135 EKDCAYYMQTRTCKFGDTCKFDHPI 159 (508)
Q Consensus 135 ~~~C~~f~~tG~C~~G~~CkF~H~~ 159 (508)
...|.||.. |. +..|.|.|+.
T Consensus 544 l~~Cky~~~---Ct-~a~Ce~~HPt 564 (681)
T KOG3702|consen 544 LTRCKYGPA---CT-SAECEFAHPT 564 (681)
T ss_pred eccccCCCc---CC-chhhhhcCCc
Confidence 368888874 88 7889999975
No 28
>KOG2185 consensus Predicted RNA-processing protein, contains G-patch domain [RNA processing and modification]
Probab=96.25 E-value=0.002 Score=67.68 Aligned_cols=32 Identities=31% Similarity=0.896 Sum_probs=26.7
Q ss_pred CCCCCCCCCCCCCCCcccCCCCCCCCCCCCCCC
Q 040937 308 LPIRPGELDCPFYLKTGSCKYGSTCRYNHPERT 340 (508)
Q Consensus 308 ~P~rpg~~~C~~y~ktG~Ck~G~~Crf~Hp~~~ 340 (508)
+|......+|+||+. |.|+|+++|||.|+...
T Consensus 134 ~PTh~sMkpC~ffLe-g~CRF~enCRfSHG~~V 165 (486)
T KOG2185|consen 134 TPTHESMKPCKFFLE-GRCRFGENCRFSHGLDV 165 (486)
T ss_pred cCcchhhccchHhhc-cccccCcccccccCccc
Confidence 344456788999998 99999999999998754
No 29
>COG5252 Uncharacterized conserved protein, contains CCCH-type Zn-finger protein [General function prediction only]
Probab=96.05 E-value=0.0013 Score=64.52 Aligned_cols=77 Identities=26% Similarity=0.563 Sum_probs=50.9
Q ss_pred CCCCCCCccccccCCCCCCCCCCCCCCCCCcccCCCCC----------CCCCCCCCCCCCCCcccccccc---cC-----
Q 040937 183 ERPGEPDCPYFLKTQRCKFGSKCKFNHPKDKLIGSSDS----------GNGDVSALPERPSEPPCAFYLK---NG----- 244 (508)
Q Consensus 183 ~r~~~~~C~~f~~tG~C~~G~~C~f~H~~~~~~~~~~~----------~~~~~~~~P~r~~~~~C~~f~k---tG----- 244 (508)
..+++.+|..|+. +.|..|+.|+|+|+..+....... ++.....-|-.....+|+||+- +|
T Consensus 81 vdpK~~vcalF~~-~~c~kg~~ckF~h~~ee~r~~eK~DLYsDvRd~~ed~pl~krP~intd~VCkffieA~e~GkYgw~ 159 (299)
T COG5252 81 VDPKTVVCALFLN-KTCAKGDACKFAHGKEEARKTEKPDLYSDVRDKEEDVPLGKRPWINTDRVCKFFIEAMESGKYGWG 159 (299)
T ss_pred cCchhHHHHHhcc-CccccCchhhhhcchHHHhhhcccchhhhhhhhhccCCcccCCCCChhHHHHHHHHHHhcCCccce
Confidence 3457889999998 999999999999997654221110 0111111121124568999974 23
Q ss_pred -CCCCC-CCCcCCCCCCC
Q 040937 245 -TCKFG-ATCKFDHPKDF 260 (508)
Q Consensus 245 -~C~~G-~~C~F~H~~~~ 260 (508)
.|++| ..|.|.|..+.
T Consensus 160 W~CPng~~~C~y~H~Lp~ 177 (299)
T COG5252 160 WTCPNGNMRCSYIHKLPD 177 (299)
T ss_pred eeCCCCCceeeeeeccCc
Confidence 49998 57999998764
No 30
>PF14608 zf-CCCH_2: Zinc finger C-x8-C-x5-C-x3-H type
Probab=95.66 E-value=0.0084 Score=36.52 Aligned_cols=19 Identities=37% Similarity=1.046 Sum_probs=16.6
Q ss_pred CCCCCCCcccCCCCCCCCCCCC
Q 040937 316 DCPFYLKTGSCKYGSTCRYNHP 337 (508)
Q Consensus 316 ~C~~y~ktG~Ck~G~~Crf~Hp 337 (508)
.|+|+.. |+++++|.|.||
T Consensus 1 ~Ck~~~~---C~~~~~C~f~HP 19 (19)
T PF14608_consen 1 PCKFGPN---CTNGDNCPFSHP 19 (19)
T ss_pred CCcCcCC---CCCCCcCccCCc
Confidence 4898864 999999999996
No 31
>KOG2333 consensus Uncharacterized conserved protein [General function prediction only]
Probab=95.53 E-value=0.0059 Score=65.69 Aligned_cols=61 Identities=25% Similarity=0.755 Sum_probs=45.7
Q ss_pred CCCccccccC--CCCCCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCCcCCCCC
Q 040937 187 EPDCPYFLKT--QRCKFGSKCKFNHPKDKLIGSSDSGNGDVSALPERPSEPPCAFYLKNGTCKFGATCKFDHPK 258 (508)
Q Consensus 187 ~~~C~~f~~t--G~C~~G~~C~f~H~~~~~~~~~~~~~~~~~~~P~r~~~~~C~~f~ktG~C~~G~~C~F~H~~ 258 (508)
..+|.-.... ..|++|++|+|.|+...-.+.... + -.+.|.+|...|.|.+|-.|+|+-..
T Consensus 76 n~LCPsli~g~~~~C~f~d~Crf~HDi~ayLatK~~---------D--ig~~Cp~f~s~G~Cp~G~~CRFl~aH 138 (614)
T KOG2333|consen 76 NRLCPSLIQGDISKCSFGDNCRFVHDIEAYLATKAP---------D--IGPSCPVFESLGFCPYGFKCRFLGAH 138 (614)
T ss_pred hccChHhhcCCCccCcccccccccccHHHHHhccCc---------c--cCCccceeeccccCCccceeehhhcc
Confidence 3589988885 369999999999997644121111 0 13679999999999999999997544
No 32
>PF14608 zf-CCCH_2: Zinc finger C-x8-C-x5-C-x3-H type
Probab=95.33 E-value=0.012 Score=35.93 Aligned_cols=19 Identities=37% Similarity=1.022 Sum_probs=16.9
Q ss_pred CcccccCccccCCCCCCCCCCC
Q 040937 450 HCPYYMKTGTCKYGATCKFDHP 471 (508)
Q Consensus 450 ~C~~y~~~G~C~fG~~C~f~H~ 471 (508)
+|+|+.. |++|++|.|.||
T Consensus 1 ~Ck~~~~---C~~~~~C~f~HP 19 (19)
T PF14608_consen 1 PCKFGPN---CTNGDNCPFSHP 19 (19)
T ss_pred CCcCcCC---CCCCCcCccCCc
Confidence 4888866 999999999997
No 33
>KOG2185 consensus Predicted RNA-processing protein, contains G-patch domain [RNA processing and modification]
Probab=95.16 E-value=0.009 Score=62.85 Aligned_cols=34 Identities=32% Similarity=0.968 Sum_probs=27.8
Q ss_pred CCCCCCCCcCccccccCCCCCCCCCCCccCCCCCC
Q 040937 128 VYPQRPGEKDCAYYMQTRTCKFGDTCKFDHPIWVP 162 (508)
Q Consensus 128 ~~p~r~~~~~C~~f~~tG~C~~G~~CkF~H~~~~~ 162 (508)
.+|.-..-++|+||+. |.|+|+++|+|.|...++
T Consensus 133 l~PTh~sMkpC~ffLe-g~CRF~enCRfSHG~~V~ 166 (486)
T KOG2185|consen 133 LTPTHESMKPCKFFLE-GRCRFGENCRFSHGLDVP 166 (486)
T ss_pred ecCcchhhccchHhhc-cccccCcccccccCcccc
Confidence 3555556689999995 999999999999997653
No 34
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=94.03 E-value=0.023 Score=54.72 Aligned_cols=25 Identities=40% Similarity=0.789 Sum_probs=23.0
Q ss_pred cCccccccCCCCCCCCCCCccCCCC
Q 040937 136 KDCAYYMQTRTCKFGDTCKFDHPIW 160 (508)
Q Consensus 136 ~~C~~f~~tG~C~~G~~CkF~H~~~ 160 (508)
.+|+.|-.||.|.+||.|+|+|...
T Consensus 142 dVCKdyk~TGYCGYGDsCKflH~R~ 166 (259)
T COG5152 142 DVCKDYKETGYCGYGDSCKFLHDRS 166 (259)
T ss_pred ccccchhhcccccCCchhhhhhhhh
Confidence 6899999999999999999999753
No 35
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=91.16 E-value=0.075 Score=51.27 Aligned_cols=26 Identities=31% Similarity=0.754 Sum_probs=24.0
Q ss_pred CCccccccCCCCCCCCCCCCCCCCCc
Q 040937 188 PDCPYFLKTQRCKFGSKCKFNHPKDK 213 (508)
Q Consensus 188 ~~C~~f~~tG~C~~G~~C~f~H~~~~ 213 (508)
.+|+.|-.||.|-+||.|+|+|...+
T Consensus 142 dVCKdyk~TGYCGYGDsCKflH~R~D 167 (259)
T COG5152 142 DVCKDYKETGYCGYGDSCKFLHDRSD 167 (259)
T ss_pred ccccchhhcccccCCchhhhhhhhhh
Confidence 58999999999999999999999764
No 36
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=90.99 E-value=0.097 Score=55.01 Aligned_cols=25 Identities=44% Similarity=1.157 Sum_probs=23.9
Q ss_pred CCcccccCccccCCCCCCCCCCCCCC
Q 040937 449 VHCPYYMKTGTCKYGATCKFDHPPPG 474 (508)
Q Consensus 449 ~~C~~y~~~G~C~fG~~C~f~H~~p~ 474 (508)
++|+||.+ |.|+||..|+|.|.+|.
T Consensus 9 tic~~~~~-g~c~~g~~cr~~h~~~~ 33 (344)
T KOG1039|consen 9 TICKYYQK-GNCKFGDLCRLSHSLPD 33 (344)
T ss_pred hhhhhccc-ccccccceeeeeccCch
Confidence 79999999 99999999999999995
No 37
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=90.05 E-value=0.07 Score=53.39 Aligned_cols=29 Identities=34% Similarity=0.870 Sum_probs=24.9
Q ss_pred CCCCCCCCCCcccCCCCCCCCCCCCCCCc
Q 040937 313 GELDCPFYLKTGSCKYGSTCRYNHPERTA 341 (508)
Q Consensus 313 g~~~C~~y~ktG~Ck~G~~Crf~Hp~~~~ 341 (508)
.+.-|+||.|+|.|++|+.|-=.|..++.
T Consensus 14 dKv~c~fy~k~gacR~gdrcsR~h~kpt~ 42 (260)
T KOG2202|consen 14 DKVNCSFYFKIGACRHGDRCSRLHEKPTF 42 (260)
T ss_pred cccccchHHhhcccccccHHHHhhccccc
Confidence 34679999999999999999999987653
No 38
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=87.98 E-value=0.28 Score=49.24 Aligned_cols=28 Identities=25% Similarity=0.740 Sum_probs=23.7
Q ss_pred CCCCcCccccccCCCCCCCCCCCccCCC
Q 040937 132 RPGEKDCAYYMQTRTCKFGDTCKFDHPI 159 (508)
Q Consensus 132 r~~~~~C~~f~~tG~C~~G~~CkF~H~~ 159 (508)
...+.-|.||+++|.|..|+.|.=+|..
T Consensus 12 ekdKv~c~fy~k~gacR~gdrcsR~h~k 39 (260)
T KOG2202|consen 12 EKDKVNCSFYFKIGACRHGDRCSRLHEK 39 (260)
T ss_pred cccccccchHHhhcccccccHHHHhhcc
Confidence 3455789999999999999999877863
No 39
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=86.10 E-value=0.23 Score=50.72 Aligned_cols=24 Identities=42% Similarity=0.855 Sum_probs=22.7
Q ss_pred cCccccccCCCCCCCCCCCccCCC
Q 040937 136 KDCAYYMQTRTCKFGDTCKFDHPI 159 (508)
Q Consensus 136 ~~C~~f~~tG~C~~G~~CkF~H~~ 159 (508)
-+|+-|-.||.|.||++|+|+|+.
T Consensus 187 DicKdykeTgycg~gdSckFlh~r 210 (313)
T KOG1813|consen 187 DICKDYKETGYCGYGDSCKFLHDR 210 (313)
T ss_pred hhhhhhHhhCcccccchhhhhhhh
Confidence 689999999999999999999985
No 40
>PF10650 zf-C3H1: Putative zinc-finger domain; InterPro: IPR019607 This domain is conserved in fungi and might be a zinc-finger domain as it contains three conserved Cs and an H in the C-x8-C-x5-C-x3-H conformation typical of a zinc-finger.
Probab=82.84 E-value=0.83 Score=29.30 Aligned_cols=22 Identities=41% Similarity=0.887 Sum_probs=18.2
Q ss_pred CCccccccCCCCCCCCCCCCCCC
Q 040937 188 PDCPYFLKTQRCKFGSKCKFNHP 210 (508)
Q Consensus 188 ~~C~~f~~tG~C~~G~~C~f~H~ 210 (508)
++|.|-++.|.| ..+.|.|.|-
T Consensus 1 ~lC~yEl~Gg~C-nd~~C~~QHf 22 (23)
T PF10650_consen 1 PLCPYELTGGVC-NDPDCEFQHF 22 (23)
T ss_pred CCCccccCCCee-CCCCCCcccc
Confidence 379999995599 5789999994
No 41
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=82.52 E-value=0.38 Score=49.18 Aligned_cols=28 Identities=39% Similarity=0.762 Sum_probs=24.9
Q ss_pred CCCcccccCccccCCCCCCCCCCCCCCc
Q 040937 448 AVHCPYYMKTGTCKYGATCKFDHPPPGE 475 (508)
Q Consensus 448 ~~~C~~y~~~G~C~fG~~C~f~H~~p~~ 475 (508)
.-+|..|..||+|-||+.|+|.|..-+.
T Consensus 186 pDicKdykeTgycg~gdSckFlh~r~Dy 213 (313)
T KOG1813|consen 186 PDICKDYKETGYCGYGDSCKFLHDRSDY 213 (313)
T ss_pred chhhhhhHhhCcccccchhhhhhhhhhc
Confidence 4579999999999999999999987654
No 42
>PF10650 zf-C3H1: Putative zinc-finger domain; InterPro: IPR019607 This domain is conserved in fungi and might be a zinc-finger domain as it contains three conserved Cs and an H in the C-x8-C-x5-C-x3-H conformation typical of a zinc-finger.
Probab=79.74 E-value=1.1 Score=28.67 Aligned_cols=22 Identities=36% Similarity=1.001 Sum_probs=18.7
Q ss_pred cccccccccCCCCCCCCCcCCCC
Q 040937 235 PPCAFYLKNGTCKFGATCKFDHP 257 (508)
Q Consensus 235 ~~C~~f~ktG~C~~G~~C~F~H~ 257 (508)
++|.|-++.|.|. .+.|.|.|-
T Consensus 1 ~lC~yEl~Gg~Cn-d~~C~~QHf 22 (23)
T PF10650_consen 1 PLCPYELTGGVCN-DPDCEFQHF 22 (23)
T ss_pred CCCccccCCCeeC-CCCCCcccc
Confidence 4799999855998 899999995
No 43
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=66.77 E-value=3.7 Score=43.08 Aligned_cols=28 Identities=39% Similarity=0.869 Sum_probs=24.6
Q ss_pred CCcccccccccCCCCCCCCCcCCCCCCCC
Q 040937 233 SEPPCAFYLKNGTCKFGATCKFDHPKDFQ 261 (508)
Q Consensus 233 ~~~~C~~f~ktG~C~~G~~C~F~H~~~~~ 261 (508)
...+|.||.+ |.|++|+.|.|.|..+..
T Consensus 160 ~p~Icsf~v~-geckRG~ec~yrhEkp~d 187 (377)
T KOG0153|consen 160 RPHICSFFVK-GECKRGAECPYRHEKPPD 187 (377)
T ss_pred CCccccceee-ccccccccccccccCCCC
Confidence 4458999999 999999999999998744
No 44
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=52.49 E-value=8.6 Score=40.43 Aligned_cols=30 Identities=37% Similarity=0.946 Sum_probs=25.8
Q ss_pred CCCCCCCcccccCccccCCCCCCCCCCCCCC
Q 040937 444 RREGAVHCPYYMKTGTCKYGATCKFDHPPPG 474 (508)
Q Consensus 444 ~~~~~~~C~~y~~~G~C~fG~~C~f~H~~p~ 474 (508)
.+..-.+|.||.+ |.|+.|..|-|.|..|.
T Consensus 157 krn~p~Icsf~v~-geckRG~ec~yrhEkp~ 186 (377)
T KOG0153|consen 157 KRNRPHICSFFVK-GECKRGAECPYRHEKPP 186 (377)
T ss_pred cCCCCccccceee-ccccccccccccccCCC
Confidence 3444678999999 99999999999999983
Done!