Query 040937
Match_columns 508
No_of_seqs 320 out of 1906
Neff 6.1
Searched_HMMs 29240
Date Mon Mar 25 21:38:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040937.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040937hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2d9n_A Cleavage and polyadenyl 99.4 2.5E-13 8.6E-18 110.9 6.2 55 185-259 8-62 (77)
2 2d9n_A Cleavage and polyadenyl 99.3 7.7E-13 2.6E-17 108.0 5.9 68 133-244 8-75 (77)
3 1m9o_A Tristetraproline; Cys3H 99.3 5.6E-13 1.9E-17 108.3 4.2 67 395-473 9-75 (77)
4 1m9o_A Tristetraproline; Cys3H 99.3 1.2E-12 4E-17 106.4 4.1 70 130-213 7-76 (77)
5 2cqe_A KIAA1064 protein; CCCH 99.3 8.8E-13 3E-17 112.6 2.1 51 185-259 11-61 (98)
6 2rhk_C Cleavage and polyadenyl 99.2 7.7E-12 2.6E-16 100.9 2.6 55 185-259 14-68 (72)
7 2rhk_C Cleavage and polyadenyl 99.1 2.5E-11 8.4E-16 97.9 2.8 58 396-476 14-71 (72)
8 2cqe_A KIAA1064 protein; CCCH 99.1 6.7E-11 2.3E-15 100.9 5.5 58 127-213 5-62 (98)
9 3d2q_A Muscleblind-like protei 99.0 1.2E-10 4.3E-15 93.2 1.7 59 187-259 6-65 (70)
10 2e5s_A Otthump00000018578; ZF- 98.9 1.3E-10 4.4E-15 99.1 -0.4 60 186-259 19-79 (98)
11 2e5s_A Otthump00000018578; ZF- 98.9 3.1E-10 1.1E-14 96.8 0.8 68 390-474 12-80 (98)
12 3d2q_A Muscleblind-like protei 98.8 7.3E-10 2.5E-14 88.7 2.2 60 397-473 5-65 (70)
13 3d2n_A Muscleblind-like protei 98.8 3.4E-09 1.1E-13 87.7 3.3 57 187-259 9-66 (83)
14 2rpp_A Muscleblind-like protei 98.7 5.5E-09 1.9E-13 87.4 3.0 57 187-259 17-74 (89)
15 3d2n_A Muscleblind-like protei 98.7 7E-09 2.4E-13 85.8 2.5 58 136-214 10-68 (83)
16 2rpp_A Muscleblind-like protei 98.5 2.2E-08 7.5E-13 83.8 2.3 58 136-214 18-76 (89)
17 3u9g_A Zinc finger CCCH-type a 98.4 9.9E-08 3.4E-12 91.8 2.3 89 136-259 90-198 (229)
18 3u9g_A Zinc finger CCCH-type a 98.2 4.9E-07 1.7E-11 87.0 2.6 83 189-339 91-198 (229)
19 2lhn_A Nuclear polyadenylated 97.0 2.6E-06 8.7E-11 69.7 0.0 66 135-260 9-74 (80)
20 2lhn_A Nuclear polyadenylated 97.0 3.2E-06 1.1E-10 69.1 0.0 41 188-257 10-50 (80)
21 2d9m_A Zinc finger CCCH-type d 96.6 0.0005 1.7E-08 54.4 1.2 23 448-471 20-42 (69)
22 2d9m_A Zinc finger CCCH-type d 96.4 0.00064 2.2E-08 53.8 0.4 28 186-214 19-46 (69)
23 2fc6_A Nuclear, target of EGR1 95.6 0.0067 2.3E-07 44.7 2.8 28 396-423 18-45 (50)
24 2fc6_A Nuclear, target of EGR1 95.3 0.0047 1.6E-07 45.5 0.9 27 186-212 19-45 (50)
25 3u1l_A PRE-mRNA-splicing facto 90.7 0.061 2.1E-06 52.5 0.9 27 448-475 70-96 (240)
26 3u1l_A PRE-mRNA-splicing facto 89.4 0.1 3.4E-06 50.9 1.1 25 188-213 71-95 (240)
27 3v33_A Ribonuclease ZC3H12A; r 71.7 0.8 2.7E-05 44.1 0.0 24 448-474 192-215 (223)
28 3v33_A Ribonuclease ZC3H12A; r 66.9 1.2 4E-05 42.9 0.0 24 314-340 192-215 (223)
29 2kqb_A Aprataxin and PNK-like 20.5 52 0.0018 27.0 2.3 12 458-469 57-68 (89)
No 1
>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.40 E-value=2.5e-13 Score=110.92 Aligned_cols=55 Identities=35% Similarity=0.690 Sum_probs=48.1
Q ss_pred CCCCCccccccCCCCCCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCCcCCCCCC
Q 040937 185 PGEPDCPYFLKTQRCKFGSKCKFNHPKDKLIGSSDSGNGDVSALPERPSEPPCAFYLKNGTCKFGATCKFDHPKD 259 (508)
Q Consensus 185 ~~~~~C~~f~~tG~C~~G~~C~f~H~~~~~~~~~~~~~~~~~~~P~r~~~~~C~~f~ktG~C~~G~~C~F~H~~~ 259 (508)
.++++|+||++ |.|++|++|+|+|+.... .+++|+||+++|.|. |++|+|.|..+
T Consensus 8 ~k~~~C~~fl~-G~C~~G~~C~fsH~~~~~------------------~~~~C~~f~~~G~C~-~~~C~f~H~~~ 62 (77)
T 2d9n_A 8 EKTVVCKHWLR-GLCKKGDQCEFLHEYDMT------------------KMPECYFYSKFGECS-NKECPFLHIDP 62 (77)
T ss_dssp CTTSBCHHHHT-TCCSCTTSSSSBCSCCTT------------------TSCBCHHHHHTCCCC-CSSCSSBCCCT
T ss_pred CcceeCHhHcc-CcCCCCCCCCCccccccC------------------cCCCCcccCCCCccC-CCCeeccCCCc
Confidence 36689999999 999999999999987532 356899999889999 99999999875
No 2
>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.35 E-value=7.7e-13 Score=108.03 Aligned_cols=68 Identities=24% Similarity=0.530 Sum_probs=56.1
Q ss_pred CCCcCccccccCCCCCCCCCCCccCCCCCCCCCCCCCCcccccccCCCCCCCCCCCCccccccCCCCCCCCCCCCCCCCC
Q 040937 133 PGEKDCAYYMQTRTCKFGDTCKFDHPIWVPEGGIPDWKEVPVIASSESLPERPGEPDCPYFLKTQRCKFGSKCKFNHPKD 212 (508)
Q Consensus 133 ~~~~~C~~f~~tG~C~~G~~CkF~H~~~~~~gg~~~~~~~~~~~~~~~~p~r~~~~~C~~f~~tG~C~~G~~C~f~H~~~ 212 (508)
..+.+|+||++ |.|++|+.|+|+|+... .++++|++|++.|.|. |+.|+|.|...
T Consensus 8 ~k~~~C~~fl~-G~C~~G~~C~fsH~~~~-----------------------~~~~~C~~f~~~G~C~-~~~C~f~H~~~ 62 (77)
T 2d9n_A 8 EKTVVCKHWLR-GLCKKGDQCEFLHEYDM-----------------------TKMPECYFYSKFGECS-NKECPFLHIDP 62 (77)
T ss_dssp CTTSBCHHHHT-TCCSCTTSSSSBCSCCT-----------------------TTSCBCHHHHHTCCCC-CSSCSSBCCCT
T ss_pred CcceeCHhHcc-CcCCCCCCCCCcccccc-----------------------CcCCCCcccCCCCccC-CCCeeccCCCc
Confidence 44589999997 99999999999997531 1346899999989998 99999999875
Q ss_pred cccCCCCCCCCCCCCCCCCCCCcccccccccC
Q 040937 213 KLIGSSDSGNGDVSALPERPSEPPCAFYLKNG 244 (508)
Q Consensus 213 ~~~~~~~~~~~~~~~~P~r~~~~~C~~f~ktG 244 (508)
.. .+++|.+|++ |
T Consensus 63 ~~------------------~~~~C~~f~~-g 75 (77)
T 2d9n_A 63 ES------------------KIKDCPWSGP-S 75 (77)
T ss_dssp TS------------------SCSSSSCCTT-T
T ss_pred cc------------------cCCCCccccc-C
Confidence 43 4579999987 5
No 3
>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A
Probab=99.33 E-value=5.6e-13 Score=108.33 Aligned_cols=67 Identities=28% Similarity=0.667 Sum_probs=29.6
Q ss_pred CCCCcCchhhhcCCCCCCCCCCCCCCCCCccccCCCchhhhhhcccCCCCCCCCCCcccccCccccCCCCCCCCCCCCC
Q 040937 395 RPGQMECDYYMKTGVCKFGEKCKFHHPIDRSAAKTPSQETVKLTLAGLPRREGAVHCPYYMKTGTCKYGATCKFDHPPP 473 (508)
Q Consensus 395 r~k~~~C~~y~~~G~C~~G~~C~f~H~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~C~~y~~~G~C~fG~~C~f~H~~p 473 (508)
+.++.+|++|++.|.|++|++|+|+|+..+++... .....++.+|++|..+|.|++|.+|+|+|...
T Consensus 9 ~~kt~~C~~f~~~G~C~~G~~C~f~H~~~e~~~~~------------~~~~~k~~~C~~f~~~G~C~~G~~C~f~H~~~ 75 (77)
T 1m9o_A 9 RYKTELCRTYSESGRCRYGAKCQFAHGLGELRQAN------------RHPKYKTELCHKFKLQGRCPYGSRCHFIHNPT 75 (77)
T ss_dssp CCCSCCCSGGGGTSCCTTTTTCSSCSSSCCGGGTC--------------------------------------------
T ss_pred CccchhCHHhhhCCCcCCCCCccCCCCChhhcccc------------ccccccCCcccchhhCcCCCCcCcCCCCCCCC
Confidence 46789999998789999999999999988766321 11234578999988889999999999999864
No 4
>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A
Probab=99.29 E-value=1.2e-12 Score=106.38 Aligned_cols=70 Identities=24% Similarity=0.552 Sum_probs=27.4
Q ss_pred CCCCCCcCccccccCCCCCCCCCCCccCCCCCCCCCCCCCCcccccccCCCCCCCCCCCCccccccCCCCCCCCCCCCCC
Q 040937 130 PQRPGEKDCAYYMQTRTCKFGDTCKFDHPIWVPEGGIPDWKEVPVIASSESLPERPGEPDCPYFLKTQRCKFGSKCKFNH 209 (508)
Q Consensus 130 p~r~~~~~C~~f~~tG~C~~G~~CkF~H~~~~~~gg~~~~~~~~~~~~~~~~p~r~~~~~C~~f~~tG~C~~G~~C~f~H 209 (508)
..+.++.+|++|+++|.|++|++|+|+|+..... ......+.++.+|++|+.+|.|++|++|+|+|
T Consensus 7 ~~~~kt~~C~~f~~~G~C~~G~~C~f~H~~~e~~--------------~~~~~~~~k~~~C~~f~~~G~C~~G~~C~f~H 72 (77)
T 1m9o_A 7 SSRYKTELCRTYSESGRCRYGAKCQFAHGLGELR--------------QANRHPKYKTELCHKFKLQGRCPYGSRCHFIH 72 (77)
T ss_dssp SSCCCSCCCSGGGGTSCCTTTTTCSSCSSSCCGG--------------GTC-----------------------------
T ss_pred CCCccchhCHHhhhCCCcCCCCCccCCCCChhhc--------------cccccccccCCcccchhhCcCCCCcCcCCCCC
Confidence 3456778999998889999999999999864210 00112345678999888779999999999999
Q ss_pred CCCc
Q 040937 210 PKDK 213 (508)
Q Consensus 210 ~~~~ 213 (508)
...+
T Consensus 73 ~~~e 76 (77)
T 1m9o_A 73 NPTE 76 (77)
T ss_dssp ----
T ss_pred CCCC
Confidence 8654
No 5
>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1
Probab=99.27 E-value=8.8e-13 Score=112.58 Aligned_cols=51 Identities=25% Similarity=0.691 Sum_probs=45.2
Q ss_pred CCCCCccccccCCCCCCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCCcCCCCCC
Q 040937 185 PGEPDCPYFLKTQRCKFGSKCKFNHPKDKLIGSSDSGNGDVSALPERPSEPPCAFYLKNGTCKFGATCKFDHPKD 259 (508)
Q Consensus 185 ~~~~~C~~f~~tG~C~~G~~C~f~H~~~~~~~~~~~~~~~~~~~P~r~~~~~C~~f~ktG~C~~G~~C~F~H~~~ 259 (508)
.++.+|++|++ |.|++|++|+|+|+ ..+|++|+++|.|++|+.|+|.|...
T Consensus 11 ~k~~lC~~f~~-G~C~~G~~C~f~H~-----------------------~~~C~~f~~~G~C~~G~~C~f~H~~~ 61 (98)
T 2cqe_A 11 KKRELCKFYIT-GFCARAENCPYMHG-----------------------DFPCKLYHTTGNCINGDDCMFSHDPL 61 (98)
T ss_dssp CCCSBCTTTTT-TCCSCSTTCSSBSS-----------------------SSBCSHHHHTSCCSSCTTCSSBCCCC
T ss_pred CCCccCccccc-CcCCCCCCCCCCCC-----------------------CCcCcCcccCCcCCCCCCCcccCCCC
Confidence 46789999986 99999999999998 15799997569999999999999864
No 6
>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens}
Probab=99.16 E-value=7.7e-12 Score=100.86 Aligned_cols=55 Identities=33% Similarity=0.626 Sum_probs=47.8
Q ss_pred CCCCCccccccCCCCCCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCCcCCCCCC
Q 040937 185 PGEPDCPYFLKTQRCKFGSKCKFNHPKDKLIGSSDSGNGDVSALPERPSEPPCAFYLKNGTCKFGATCKFDHPKD 259 (508)
Q Consensus 185 ~~~~~C~~f~~tG~C~~G~~C~f~H~~~~~~~~~~~~~~~~~~~P~r~~~~~C~~f~ktG~C~~G~~C~F~H~~~ 259 (508)
.++++|+||++ |.|++|++|+|+|+.... .+++|+||++.|.|.+ ++|+|.|..+
T Consensus 14 ~k~~vCk~fl~-G~C~~G~~C~fsH~~~~~------------------~~~~C~~f~~~G~C~~-~~C~y~H~~p 68 (72)
T 2rhk_C 14 EKTVVCKHWLR-GLCKKGDQCEFLHEYDMT------------------KMSECYFYSKFGECSN-KECPFLHIDP 68 (72)
T ss_dssp CCCSBCHHHHT-TCCCCGGGSSSBCSCCTT------------------SCCBCHHHHHHSCCSB-TTCCSBCCCC
T ss_pred CcCeeCHHHhc-CCCCCCCCCCCccccccc------------------cCCcccccCCCCCCCC-CCeeccCCCc
Confidence 35679999999 999999999999986432 3578999998899998 9999999875
No 7
>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens}
Probab=99.10 E-value=2.5e-11 Score=97.89 Aligned_cols=58 Identities=31% Similarity=0.757 Sum_probs=49.3
Q ss_pred CCCcCchhhhcCCCCCCCCCCCCCCCCCccccCCCchhhhhhcccCCCCCCCCCCcccccCccccCCCCCCCCCCCCCCc
Q 040937 396 PGQMECDYYMKTGVCKFGEKCKFHHPIDRSAAKTPSQETVKLTLAGLPRREGAVHCPYYMKTGTCKYGATCKFDHPPPGE 475 (508)
Q Consensus 396 ~k~~~C~~y~~~G~C~~G~~C~f~H~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~C~~y~~~G~C~fG~~C~f~H~~p~~ 475 (508)
.++++|++|++ |.|++|++|+|+|+.+.. +..+|+||+++|.|.+ ++|+|.|..|..
T Consensus 14 ~k~~vCk~fl~-G~C~~G~~C~fsH~~~~~---------------------~~~~C~~f~~~G~C~~-~~C~y~H~~p~~ 70 (72)
T 2rhk_C 14 EKTVVCKHWLR-GLCKKGDQCEFLHEYDMT---------------------KMSECYFYSKFGECSN-KECPFLHIDPES 70 (72)
T ss_dssp CCCSBCHHHHT-TCCCCGGGSSSBCSCCTT---------------------SCCBCHHHHHHSCCSB-TTCCSBCCCCC-
T ss_pred CcCeeCHHHhc-CCCCCCCCCCCccccccc---------------------cCCcccccCCCCCCCC-CCeeccCCCccc
Confidence 56789999997 999999999999986432 2578999999999999 999999999865
Q ss_pred c
Q 040937 476 V 476 (508)
Q Consensus 476 ~ 476 (508)
.
T Consensus 71 k 71 (72)
T 2rhk_C 71 K 71 (72)
T ss_dssp -
T ss_pred c
Confidence 4
No 8
>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1
Probab=99.09 E-value=6.7e-11 Score=100.89 Aligned_cols=58 Identities=22% Similarity=0.481 Sum_probs=48.4
Q ss_pred CCCCCCCCCcCccccccCCCCCCCCCCCccCCCCCCCCCCCCCCcccccccCCCCCCCCCCCCccccccCCCCCCCCCCC
Q 040937 127 PVYPQRPGEKDCAYYMQTRTCKFGDTCKFDHPIWVPEGGIPDWKEVPVIASSESLPERPGEPDCPYFLKTQRCKFGSKCK 206 (508)
Q Consensus 127 ~~~p~r~~~~~C~~f~~tG~C~~G~~CkF~H~~~~~~gg~~~~~~~~~~~~~~~~p~r~~~~~C~~f~~tG~C~~G~~C~ 206 (508)
..+..+..+.+|+||+ +|.|++|+.|+|+|+. .+|++|+..|.|++|+.|+
T Consensus 5 H~~~~~~k~~lC~~f~-~G~C~~G~~C~f~H~~----------------------------~~C~~f~~~G~C~~G~~C~ 55 (98)
T 2cqe_A 5 SSGELPKKRELCKFYI-TGFCARAENCPYMHGD----------------------------FPCKLYHTTGNCINGDDCM 55 (98)
T ss_dssp CCCCCSCCCSBCTTTT-TTCCSCSTTCSSBSSS----------------------------SBCSHHHHTSCCSSCTTCS
T ss_pred ccCCCCCCCccCcccc-cCcCCCCCCCCCCCCC----------------------------CcCcCcccCCcCCCCCCCc
Confidence 3445556778999997 6999999999999962 4899997569999999999
Q ss_pred CCCCCCc
Q 040937 207 FNHPKDK 213 (508)
Q Consensus 207 f~H~~~~ 213 (508)
|+|....
T Consensus 56 f~H~~~~ 62 (98)
T 2cqe_A 56 FSHDPLT 62 (98)
T ss_dssp SBCCCCC
T ss_pred ccCCCCc
Confidence 9998643
No 9
>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A
Probab=98.96 E-value=1.2e-10 Score=93.21 Aligned_cols=59 Identities=29% Similarity=0.651 Sum_probs=46.1
Q ss_pred CCCccccccCCCCCCCC-CCCCCCCCCcccCCCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCCcCCCCCC
Q 040937 187 EPDCPYFLKTQRCKFGS-KCKFNHPKDKLIGSSDSGNGDVSALPERPSEPPCAFYLKNGTCKFGATCKFDHPKD 259 (508)
Q Consensus 187 ~~~C~~f~~tG~C~~G~-~C~f~H~~~~~~~~~~~~~~~~~~~P~r~~~~~C~~f~ktG~C~~G~~C~F~H~~~ 259 (508)
.++|++|++ |.|++|+ .|+|+|+...... -+.....++|++|++ |.|.++ +|+|.|+..
T Consensus 6 ~~vC~~f~~-G~C~rg~~~C~f~H~~~~~~~-----------~~~~~~~~vC~~flk-G~C~r~-~C~y~H~~~ 65 (70)
T 3d2q_A 6 LEVCREYQR-GNCNRGENDCRFAHPADSTMI-----------DTNDNTVTVCMDYIK-GRCSRE-KCKYFHPPA 65 (70)
T ss_dssp EEBCHHHHT-TCCSSCTTTCSSBCCCTTSCC-----------BTTTTEEEBCHHHHT-TCCCCT-TCCSBCCCH
T ss_pred chhCHHHhc-CCCCCCCCCCCCccCcccccc-----------cccCCcceeccccCc-CCCCCC-CcCeeCCHH
Confidence 358999998 9999999 5999998754310 011124679999999 999988 999999763
No 10
>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.90 E-value=1.3e-10 Score=99.10 Aligned_cols=60 Identities=30% Similarity=0.625 Sum_probs=47.9
Q ss_pred CCCCccccccCCCCCCCC-CCCCCCCCCcccCCCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCCcCCCCCC
Q 040937 186 GEPDCPYFLKTQRCKFGS-KCKFNHPKDKLIGSSDSGNGDVSALPERPSEPPCAFYLKNGTCKFGATCKFDHPKD 259 (508)
Q Consensus 186 ~~~~C~~f~~tG~C~~G~-~C~f~H~~~~~~~~~~~~~~~~~~~P~r~~~~~C~~f~ktG~C~~G~~C~F~H~~~ 259 (508)
+.++|++|++ |.|++|+ .|+|+|+...... .+.....++|.+|++ |.|.++ +|+|.|+..
T Consensus 19 k~~VCr~Flr-G~C~rgd~~C~FsH~~~~~~~-----------~~~~~~~~vC~~flk-G~C~r~-~C~y~H~~~ 79 (98)
T 2e5s_A 19 KLEVCREFQR-GNCARGETDCRFAHPADSTMI-----------DTSDNTVTVCMDYIK-GRCMRE-KCKYFHPPA 79 (98)
T ss_dssp EEEBCSHHHH-TCCSSHHHHCSSBCCSSCCSC-----------CTTTCEEEBCHHHHH-TCCCCT-TCCSBCCCH
T ss_pred hhhhhHHHhc-CcCCCCCCCCCCcCCchhccc-----------cccCCccccchhhcc-CCCCCC-CcCccCChH
Confidence 3469999999 9999999 7999999865310 011224679999999 999988 999999874
No 11
>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.87 E-value=3.1e-10 Score=96.78 Aligned_cols=68 Identities=29% Similarity=0.652 Sum_probs=52.9
Q ss_pred CCCCCCCCCcCchhhhcCCCCCCCC-CCCCCCCCCccccCCCchhhhhhcccCCCCCCCCCCcccccCccccCCCCCCCC
Q 040937 390 SLYPQRPGQMECDYYMKTGVCKFGE-KCKFHHPIDRSAAKTPSQETVKLTLAGLPRREGAVHCPYYMKTGTCKYGATCKF 468 (508)
Q Consensus 390 ~~~p~r~k~~~C~~y~~~G~C~~G~-~C~f~H~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~C~~y~~~G~C~fG~~C~f 468 (508)
..+....+..+|++|++ |.|.+|+ .|+|+|+.+..... +......+|.+|++ |.|.+| +|+|
T Consensus 12 ~K~~~~~k~~VCr~Flr-G~C~rgd~~C~FsH~~~~~~~~--------------~~~~~~~vC~~flk-G~C~r~-~C~y 74 (98)
T 2e5s_A 12 QKLLRTDKLEVCREFQR-GNCARGETDCRFAHPADSTMID--------------TSDNTVTVCMDYIK-GRCMRE-KCKY 74 (98)
T ss_dssp CCCCCSSEEEBCSHHHH-TCCSSHHHHCSSBCCSSCCSCC--------------TTTCEEEBCHHHHH-TCCCCT-TCCS
T ss_pred ccccChhhhhhhHHHhc-CcCCCCCCCCCCcCCchhcccc--------------ccCCccccchhhcc-CCCCCC-CcCc
Confidence 33334456789999997 9999998 89999998754321 11234789999999 999998 9999
Q ss_pred CCCCCC
Q 040937 469 DHPPPG 474 (508)
Q Consensus 469 ~H~~p~ 474 (508)
.|+++.
T Consensus 75 ~H~~~~ 80 (98)
T 2e5s_A 75 FHPPAH 80 (98)
T ss_dssp BCCCHH
T ss_pred cCChHH
Confidence 999753
No 12
>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A
Probab=98.85 E-value=7.3e-10 Score=88.73 Aligned_cols=60 Identities=35% Similarity=0.800 Sum_probs=47.8
Q ss_pred CCcCchhhhcCCCCCCCC-CCCCCCCCCccccCCCchhhhhhcccCCCCCCCCCCcccccCccccCCCCCCCCCCCCC
Q 040937 397 GQMECDYYMKTGVCKFGE-KCKFHHPIDRSAAKTPSQETVKLTLAGLPRREGAVHCPYYMKTGTCKYGATCKFDHPPP 473 (508)
Q Consensus 397 k~~~C~~y~~~G~C~~G~-~C~f~H~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~C~~y~~~G~C~fG~~C~f~H~~p 473 (508)
+..+|++|++ |.|.+|+ .|+|+|+.+..... +...++.+|.+|++ |.|..| +|+|.|+++
T Consensus 5 k~~vC~~f~~-G~C~rg~~~C~f~H~~~~~~~~--------------~~~~~~~vC~~flk-G~C~r~-~C~y~H~~~ 65 (70)
T 3d2q_A 5 RLEVCREYQR-GNCNRGENDCRFAHPADSTMID--------------TNDNTVTVCMDYIK-GRCSRE-KCKYFHPPA 65 (70)
T ss_dssp EEEBCHHHHT-TCCSSCTTTCSSBCCCTTSCCB--------------TTTTEEEBCHHHHT-TCCCCT-TCCSBCCCH
T ss_pred cchhCHHHhc-CCCCCCCCCCCCccCccccccc--------------ccCCcceeccccCc-CCCCCC-CcCeeCCHH
Confidence 3569999985 9999999 59999997654311 11234789999999 999998 999999964
No 13
>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens}
Probab=98.75 E-value=3.4e-09 Score=87.66 Aligned_cols=57 Identities=30% Similarity=0.546 Sum_probs=45.8
Q ss_pred CCCccccccCCCCCCCC-CCCCCCCCCcccCCCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCCcCCCCCC
Q 040937 187 EPDCPYFLKTQRCKFGS-KCKFNHPKDKLIGSSDSGNGDVSALPERPSEPPCAFYLKNGTCKFGATCKFDHPKD 259 (508)
Q Consensus 187 ~~~C~~f~~tG~C~~G~-~C~f~H~~~~~~~~~~~~~~~~~~~P~r~~~~~C~~f~ktG~C~~G~~C~F~H~~~ 259 (508)
.++|++|++ |.|.+|+ .|+|+|+...... . ....++|.+|++ |.|.++ .|+|.|+..
T Consensus 9 ~~VCr~Flr-G~C~r~d~~C~f~H~~~~~~~---------~----~~~~~vC~dflk-G~C~r~-~C~y~H~~~ 66 (83)
T 3d2n_A 9 LEVCREFQR-GTCSRPDTECKFAHPSKSCQV---------E----NGRVIACFDSLK-GRCSRE-NCKYLHPPP 66 (83)
T ss_dssp EEBCTTGGG-TCCCSCTTTCSSBCCCTTCCE---------E----TTEEECCHHHHT-TCCCCS-SCSSCCCCH
T ss_pred chhcHHHhc-CCCCCCCCCCCCcCCCccccc---------c----CCceeehhHhhh-ccccCC-CcceeCChH
Confidence 368999999 9999997 9999999754200 0 113579999999 999987 999999874
No 14
>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens}
Probab=98.70 E-value=5.5e-09 Score=87.44 Aligned_cols=57 Identities=30% Similarity=0.563 Sum_probs=46.1
Q ss_pred CCCccccccCCCCCCCC-CCCCCCCCCcccCCCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCCcCCCCCC
Q 040937 187 EPDCPYFLKTQRCKFGS-KCKFNHPKDKLIGSSDSGNGDVSALPERPSEPPCAFYLKNGTCKFGATCKFDHPKD 259 (508)
Q Consensus 187 ~~~C~~f~~tG~C~~G~-~C~f~H~~~~~~~~~~~~~~~~~~~P~r~~~~~C~~f~ktG~C~~G~~C~F~H~~~ 259 (508)
.++|++|++ |.|.+|+ .|+|+|+....... ....++|.+|++ |.|.++ .|+|.|+..
T Consensus 17 ~~VCrdFlr-G~C~r~d~~CrfsH~~~~~~v~-------------~~~~~vC~dflk-G~C~r~-~Cky~H~~~ 74 (89)
T 2rpp_A 17 LEVCRQFQR-GTCSRSDEECKFAHPPKSCQVE-------------NGRVIACFDSLK-GRCSRE-NCKYLHPPT 74 (89)
T ss_dssp ECBCHHHHH-TCCCCCTTTSSSBCCCSSSCCB-------------TTBEEBCHHHHH-TCCCCT-TCCSBCCCH
T ss_pred hhhchHHhc-CCCCCCCCCCCCcCCCcccccc-------------CCceeeehhhhh-CcCCCC-CcceecCHH
Confidence 469999999 9999998 99999997643100 113578999999 999966 999999874
No 15
>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens}
Probab=98.66 E-value=7e-09 Score=85.75 Aligned_cols=58 Identities=34% Similarity=0.615 Sum_probs=45.6
Q ss_pred cCccccccCCCCCCCC-CCCccCCCCCCCCCCCCCCcccccccCCCCCCCCCCCCccccccCCCCCCCCCCCCCCCCCcc
Q 040937 136 KDCAYYMQTRTCKFGD-TCKFDHPIWVPEGGIPDWKEVPVIASSESLPERPGEPDCPYFLKTQRCKFGSKCKFNHPKDKL 214 (508)
Q Consensus 136 ~~C~~f~~tG~C~~G~-~CkF~H~~~~~~gg~~~~~~~~~~~~~~~~p~r~~~~~C~~f~~tG~C~~G~~C~f~H~~~~~ 214 (508)
++|++|++ |.|.+|| .|+|+|+..... + .....++|.+|++ |.|.++ .|+|.|.....
T Consensus 10 ~VCr~Flr-G~C~r~d~~C~f~H~~~~~~-----------~-------~~~~~~vC~dflk-G~C~r~-~C~y~H~~~~l 68 (83)
T 3d2n_A 10 EVCREFQR-GTCSRPDTECKFAHPSKSCQ-----------V-------ENGRVIACFDSLK-GRCSRE-NCKYLHPPPHL 68 (83)
T ss_dssp EBCTTGGG-TCCCSCTTTCSSBCCCTTCC-----------E-------ETTEEECCHHHHT-TCCCCS-SCSSCCCCHHH
T ss_pred hhcHHHhc-CCCCCCCCCCCCcCCCcccc-----------c-------cCCceeehhHhhh-ccccCC-CcceeCChHHH
Confidence 69999998 9999997 999999863210 0 0112468999999 999998 99999997654
No 16
>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens}
Probab=98.54 E-value=2.2e-08 Score=83.77 Aligned_cols=58 Identities=33% Similarity=0.586 Sum_probs=45.8
Q ss_pred cCccccccCCCCCCCC-CCCccCCCCCCCCCCCCCCcccccccCCCCCCCCCCCCccccccCCCCCCCCCCCCCCCCCcc
Q 040937 136 KDCAYYMQTRTCKFGD-TCKFDHPIWVPEGGIPDWKEVPVIASSESLPERPGEPDCPYFLKTQRCKFGSKCKFNHPKDKL 214 (508)
Q Consensus 136 ~~C~~f~~tG~C~~G~-~CkF~H~~~~~~gg~~~~~~~~~~~~~~~~p~r~~~~~C~~f~~tG~C~~G~~C~f~H~~~~~ 214 (508)
++|++|++ |.|.+|+ .|+|+|+..... +. .....+|.+|++ |.|.++ .|+|.|.....
T Consensus 18 ~VCrdFlr-G~C~r~d~~CrfsH~~~~~~-----v~-------------~~~~~vC~dflk-G~C~r~-~Cky~H~~~hl 76 (89)
T 2rpp_A 18 EVCRQFQR-GTCSRSDEECKFAHPPKSCQ-----VE-------------NGRVIACFDSLK-GRCSRE-NCKYLHPPTHL 76 (89)
T ss_dssp CBCHHHHH-TCCCCCTTTSSSBCCCSSSC-----CB-------------TTBEEBCHHHHH-TCCCCT-TCCSBCCCHHH
T ss_pred hhchHHhc-CCCCCCCCCCCCcCCCcccc-----cc-------------CCceeeehhhhh-CcCCCC-CcceecCHHHH
Confidence 69999998 9999998 999999864210 00 113468999999 999887 99999997654
No 17
>3u9g_A Zinc finger CCCH-type antiviral protein 1; zinc finger protein; 1.80A {Rattus norvegicus}
Probab=98.36 E-value=9.9e-08 Score=91.78 Aligned_cols=89 Identities=21% Similarity=0.547 Sum_probs=63.9
Q ss_pred cCccccccCCCCC----CCCCCCccCCCCCCCC-------CCCCCCccc---ccccCCC--CCCCCCCCCccccccC---
Q 040937 136 KDCAYYMQTRTCK----FGDTCKFDHPIWVPEG-------GIPDWKEVP---VIASSES--LPERPGEPDCPYFLKT--- 196 (508)
Q Consensus 136 ~~C~~f~~tG~C~----~G~~CkF~H~~~~~~g-------g~~~~~~~~---~~~~~~~--~p~r~~~~~C~~f~~t--- 196 (508)
.+|++|+. |.|. .+..|+|.|++..+++ ++....+.. ++-.+.+ +| ++|.+| +.
T Consensus 90 HLCK~~l~-G~C~~~~~~~~~Ck~SHdi~s~~N~~vLk~h~l~~L~~~eL~~LLLQnDp~lLP-----eiC~~Y-kG~g~ 162 (229)
T 3u9g_A 90 HLCKLNLL-GRCHYAQSQRNLCKYSHDVLSEQNFQILKNHELSGLNQEELACLLVQSDPFFLP-----EICKSY-KGEGR 162 (229)
T ss_dssp CCCHHHHT-TCCGGGTCCSSCCSSCSCTTCHHHHHHHHHTTCTTCCHHHHHHHHHTTCGGGSC-----CBCTTC-CCSSS
T ss_pred eechhhhc-CcCCcccCCCCCcccccccCchhHHHHHHHcCcccCCHhHhhheeccCCCccCc-----hHHHHh-CCCCC
Confidence 79999995 9993 3578999999865332 222222110 1111111 23 699999 72
Q ss_pred -CCCCCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCCcCCCCCC
Q 040937 197 -QRCKFGSKCKFNHPKDKLIGSSDSGNGDVSALPERPSEPPCAFYLKNGTCKFGATCKFDHPKD 259 (508)
Q Consensus 197 -G~C~~G~~C~f~H~~~~~~~~~~~~~~~~~~~P~r~~~~~C~~f~ktG~C~~G~~C~F~H~~~ 259 (508)
|.|++++.|..+| +|++|++ |.|+| ..|+-+|...
T Consensus 163 ~g~C~~~~~C~kLH--------------------------IC~~Fl~-G~C~f-~~CkRsH~~~ 198 (229)
T 3u9g_A 163 KQTCGQPQPCERLH--------------------------ICEHFTR-GNCSY-LNCLRSHNLM 198 (229)
T ss_dssp CCSCSSSSCCCSBC--------------------------SCHHHHT-TCCCC-SSCSSCCCTT
T ss_pred CCcCCCCCCCccee--------------------------ccchhhc-CCcCC-CCccCccCcc
Confidence 5899999999999 6999998 99999 8999999874
No 18
>3u9g_A Zinc finger CCCH-type antiviral protein 1; zinc finger protein; 1.80A {Rattus norvegicus}
Probab=98.19 E-value=4.9e-07 Score=86.99 Aligned_cols=83 Identities=28% Similarity=0.472 Sum_probs=61.8
Q ss_pred CccccccCCCC----CCCCCCCCCCCCCcccCCCCCC-----------------CCCCCCCCCCCCCcccccccc----c
Q 040937 189 DCPYFLKTQRC----KFGSKCKFNHPKDKLIGSSDSG-----------------NGDVSALPERPSEPPCAFYLK----N 243 (508)
Q Consensus 189 ~C~~f~~tG~C----~~G~~C~f~H~~~~~~~~~~~~-----------------~~~~~~~P~r~~~~~C~~f~k----t 243 (508)
+|++|+- |.| ..+..|+|+|+.....+..... .+|..-+| .+|.+| + .
T Consensus 91 LCK~~l~-G~C~~~~~~~~~Ck~SHdi~s~~N~~vLk~h~l~~L~~~eL~~LLLQnDp~lLP-----eiC~~Y-kG~g~~ 163 (229)
T 3u9g_A 91 LCKLNLL-GRCHYAQSQRNLCKYSHDVLSEQNFQILKNHELSGLNQEELACLLVQSDPFFLP-----EICKSY-KGEGRK 163 (229)
T ss_dssp CCHHHHT-TCCGGGTCCSSCCSSCSCTTCHHHHHHHHHTTCTTCCHHHHHHHHHTTCGGGSC-----CBCTTC-CCSSSC
T ss_pred echhhhc-CcCCcccCCCCCcccccccCchhHHHHHHHcCcccCCHhHhhheeccCCCccCc-----hHHHHh-CCCCCC
Confidence 8999998 999 3457899999986542111000 11222334 489999 7 3
Q ss_pred CCCCCCCCCcCCCCCCCCCCCCCCCCCCccccccccccccccCcCCCCCcccccCcccccCCCCCCCCCCCCCCCCCCCc
Q 040937 244 GTCKFGATCKFDHPKDFQLPSVGQENGIGEQNESVIKTDETTGLLNPGMSLFSHAPAMLHNSKGLPIRPGELDCPFYLKT 323 (508)
Q Consensus 244 G~C~~G~~C~F~H~~~~~~~~~~~~~~~~~q~~s~~~~~~~~g~~~~~~~~~~~~Pa~~~~s~~~P~rpg~~~C~~y~kt 323 (508)
|.|++++.|...| +|++|++
T Consensus 164 g~C~~~~~C~kLH-----------------------------------------------------------IC~~Fl~- 183 (229)
T 3u9g_A 164 QTCGQPQPCERLH-----------------------------------------------------------ICEHFTR- 183 (229)
T ss_dssp CSCSSSSCCCSBC-----------------------------------------------------------SCHHHHT-
T ss_pred CcCCCCCCCccee-----------------------------------------------------------ccchhhc-
Confidence 5899999999999 5999998
Q ss_pred ccCCCCCCCCCCCCCC
Q 040937 324 GSCKYGSTCRYNHPER 339 (508)
Q Consensus 324 G~Ck~G~~Crf~Hp~~ 339 (508)
|.|+| ..|+-.|.-.
T Consensus 184 G~C~f-~~CkRsH~~~ 198 (229)
T 3u9g_A 184 GNCSY-LNCLRSHNLM 198 (229)
T ss_dssp TCCCC-SSCSSCCCTT
T ss_pred CCcCC-CCccCccCcc
Confidence 99999 8999999753
No 19
>2lhn_A Nuclear polyadenylated RNA-binding protein NAB2; nuclear protein; NMR {Saccharomyces cerevisiae S288C}
Probab=97.03 E-value=2.6e-06 Score=69.71 Aligned_cols=66 Identities=29% Similarity=0.622 Sum_probs=52.8
Q ss_pred CcCccccccCCCCCCCCCCCccCCCCCCCCCCCCCCcccccccCCCCCCCCCCCCccccccCCCCCCCCCCCCCCCCCcc
Q 040937 135 EKDCAYYMQTRTCKFGDTCKFDHPIWVPEGGIPDWKEVPVIASSESLPERPGEPDCPYFLKTQRCKFGSKCKFNHPKDKL 214 (508)
Q Consensus 135 ~~~C~~f~~tG~C~~G~~CkF~H~~~~~~gg~~~~~~~~~~~~~~~~p~r~~~~~C~~f~~tG~C~~G~~C~f~H~~~~~ 214 (508)
.+.|+||. .|+. ..|.|.|+.. ...|+++.. |+. ..|.|.|+.
T Consensus 9 ~e~CKf~~---~Ctn-~~C~f~Hp~~--------------------------~~~Cr~g~~---C~~-~~C~f~HP~--- 51 (80)
T 2lhn_A 9 LEQCKFGT---HCTN-KRCKYRHARS--------------------------HIMCREGAN---CTR-IDCLFGHPI--- 51 (80)
Confidence 47999997 4999 9999999641 137999876 986 789999973
Q ss_pred cCCCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCCcCCCCCCC
Q 040937 215 IGSSDSGNGDVSALPERPSEPPCAFYLKNGTCKFGATCKFDHPKDF 260 (508)
Q Consensus 215 ~~~~~~~~~~~~~~P~r~~~~~C~~f~ktG~C~~G~~C~F~H~~~~ 260 (508)
...|+|+.. |++ ..|.|.|+...
T Consensus 52 -------------------~~~Crf~~~---C~n-~~C~F~Hp~g~ 74 (80)
T 2lhn_A 52 -------------------NEDCRFGVN---CKN-IYCLFRHPPGR 74 (80)
Confidence 246999876 995 89999997654
No 20
>2lhn_A Nuclear polyadenylated RNA-binding protein NAB2; nuclear protein; NMR {Saccharomyces cerevisiae S288C}
Probab=96.98 E-value=3.2e-06 Score=69.13 Aligned_cols=41 Identities=27% Similarity=0.708 Sum_probs=34.3
Q ss_pred CCccccccCCCCCCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCCcCCCC
Q 040937 188 PDCPYFLKTQRCKFGSKCKFNHPKDKLIGSSDSGNGDVSALPERPSEPPCAFYLKNGTCKFGATCKFDHP 257 (508)
Q Consensus 188 ~~C~~f~~tG~C~~G~~C~f~H~~~~~~~~~~~~~~~~~~~P~r~~~~~C~~f~ktG~C~~G~~C~F~H~ 257 (508)
+.|+||.. |.. ..|+|.|... .++|+++.. |++ .+|.|.|+
T Consensus 10 e~CKf~~~---Ctn-~~C~f~Hp~~---------------------~~~Cr~g~~---C~~-~~C~f~HP 50 (80)
T 2lhn_A 10 EQCKFGTH---CTN-KRCKYRHARS---------------------HIMCREGAN---CTR-IDCLFGHP 50 (80)
Confidence 58999987 988 9999999742 248999976 995 88999996
No 21
>2d9m_A Zinc finger CCCH-type domain containing protein 7A; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.63 E-value=0.0005 Score=54.41 Aligned_cols=23 Identities=48% Similarity=0.974 Sum_probs=20.9
Q ss_pred CCCcccccCccccCCCCCCCCCCC
Q 040937 448 AVHCPYYMKTGTCKYGATCKFDHP 471 (508)
Q Consensus 448 ~~~C~~y~~~G~C~fG~~C~f~H~ 471 (508)
..+|..|+. |.|+||++|.|+|-
T Consensus 20 ~~LC~~~~~-G~C~~G~~C~FAHG 42 (69)
T 2d9m_A 20 FSICDRYMN-GTCPEGNSCKFAHG 42 (69)
T ss_dssp CSBCHHHHH-SCCSSCSSCSSBSS
T ss_pred cccCcccCc-CCCCCCCccCCcCC
Confidence 589999954 99999999999996
No 22
>2d9m_A Zinc finger CCCH-type domain containing protein 7A; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.37 E-value=0.00064 Score=53.80 Aligned_cols=28 Identities=29% Similarity=0.611 Sum_probs=24.8
Q ss_pred CCCCccccccCCCCCCCCCCCCCCCCCcc
Q 040937 186 GEPDCPYFLKTQRCKFGSKCKFNHPKDKL 214 (508)
Q Consensus 186 ~~~~C~~f~~tG~C~~G~~C~f~H~~~~~ 214 (508)
+..+|+.|++ |.|++|+.|.|+|...++
T Consensus 19 k~~LC~~~~~-G~C~~G~~C~FAHG~~EL 46 (69)
T 2d9m_A 19 YFSICDRYMN-GTCPEGNSCKFAHGNAEL 46 (69)
T ss_dssp CCSBCHHHHH-SCCSSCSSCSSBSSHHHH
T ss_pred CcccCcccCc-CCCCCCCccCCcCCHHHH
Confidence 4479999966 999999999999998776
No 23
>2fc6_A Nuclear, target of EGR1, member 1; structure genomics, ZF-CCCH domain, member 1(nuclear), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.66.1.1
Probab=95.62 E-value=0.0067 Score=44.68 Aligned_cols=28 Identities=29% Similarity=0.617 Sum_probs=25.7
Q ss_pred CCCcCchhhhcCCCCCCCCCCCCCCCCC
Q 040937 396 PGQMECDYYMKTGVCKFGEKCKFHHPID 423 (508)
Q Consensus 396 ~k~~~C~~y~~~G~C~~G~~C~f~H~~~ 423 (508)
.++.+|..|...|+|+.|.+|.+.|+.+
T Consensus 18 ~~~~iC~~FSayGwCp~G~~Cp~SHDiD 45 (50)
T 2fc6_A 18 HPTSICDNFSAYGWCPLGPQCPQSHDIS 45 (50)
T ss_dssp CCSCBCSHHHHTCCCTTGGGCSSBCCCC
T ss_pred cccchhhhccccccCCCCCCCCccccCC
Confidence 4578999999999999999999999876
No 24
>2fc6_A Nuclear, target of EGR1, member 1; structure genomics, ZF-CCCH domain, member 1(nuclear), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.66.1.1
Probab=95.26 E-value=0.0047 Score=45.50 Aligned_cols=27 Identities=22% Similarity=0.477 Sum_probs=24.8
Q ss_pred CCCCccccccCCCCCCCCCCCCCCCCC
Q 040937 186 GEPDCPYFLKTQRCKFGSKCKFNHPKD 212 (508)
Q Consensus 186 ~~~~C~~f~~tG~C~~G~~C~f~H~~~ 212 (508)
.+.+|..|...|+|++|..|+++|+.+
T Consensus 19 ~~~iC~~FSayGwCp~G~~Cp~SHDiD 45 (50)
T 2fc6_A 19 PTSICDNFSAYGWCPLGPQCPQSHDIS 45 (50)
T ss_dssp CSCBCSHHHHTCCCTTGGGCSSBCCCC
T ss_pred ccchhhhccccccCCCCCCCCccccCC
Confidence 567999999999999999999999975
No 25
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=90.73 E-value=0.061 Score=52.46 Aligned_cols=27 Identities=33% Similarity=0.861 Sum_probs=24.8
Q ss_pred CCCcccccCccccCCCCCCCCCCCCCCc
Q 040937 448 AVHCPYYMKTGTCKYGATCKFDHPPPGE 475 (508)
Q Consensus 448 ~~~C~~y~~~G~C~fG~~C~f~H~~p~~ 475 (508)
..+|.||.+ |.|+.|..|.|.|..|..
T Consensus 70 ~~~C~ffak-G~C~~G~~C~y~H~lPt~ 96 (240)
T 3u1l_A 70 LFFCLFFAK-GMCCLGPKCEYLHHIPDE 96 (240)
T ss_dssp CSBCHHHHT-TCCSCGGGCSSBBSCCCH
T ss_pred CeEcCcccc-CCCCCCCCCCccCCCCCc
Confidence 469999999 999999999999998875
No 26
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=89.36 E-value=0.1 Score=50.92 Aligned_cols=25 Identities=32% Similarity=0.675 Sum_probs=22.6
Q ss_pred CCccccccCCCCCCCCCCCCCCCCCc
Q 040937 188 PDCPYFLKTQRCKFGSKCKFNHPKDK 213 (508)
Q Consensus 188 ~~C~~f~~tG~C~~G~~C~f~H~~~~ 213 (508)
.+|.||.+ |.|++|+.|+|+|....
T Consensus 71 ~~C~ffak-G~C~~G~~C~y~H~lPt 95 (240)
T 3u1l_A 71 FFCLFFAK-GMCCLGPKCEYLHHIPD 95 (240)
T ss_dssp SBCHHHHT-TCCSCGGGCSSBBSCCC
T ss_pred eEcCcccc-CCCCCCCCCCccCCCCC
Confidence 58999999 99999999999998644
No 27
>3v33_A Ribonuclease ZC3H12A; rossmann-like sandwich fold, RNAse, cytoplastic, hydrolase; 2.00A {Homo sapiens}
Probab=71.66 E-value=0.8 Score=44.06 Aligned_cols=24 Identities=46% Similarity=1.027 Sum_probs=0.0
Q ss_pred CCCcccccCccccCCCCCCCCCCCCCC
Q 040937 448 AVHCPYYMKTGTCKYGATCKFDHPPPG 474 (508)
Q Consensus 448 ~~~C~~y~~~G~C~fG~~C~f~H~~p~ 474 (508)
..+|+|=.+ |.||.+|+|.||...
T Consensus 192 ~~~~~~~~~---~~~~~~~~~~~~~~~ 215 (223)
T 3v33_A 192 KQPCPYGRK---CTYGIKCRFFHPERP 215 (223)
T ss_dssp ---------------------------
T ss_pred CCCCCCCcc---cccCCcceecCCccC
Confidence 568999866 999999999999643
No 28
>3v33_A Ribonuclease ZC3H12A; rossmann-like sandwich fold, RNAse, cytoplastic, hydrolase; 2.00A {Homo sapiens}
Probab=66.89 E-value=1.2 Score=42.93 Aligned_cols=24 Identities=46% Similarity=1.131 Sum_probs=0.0
Q ss_pred CCCCCCCCCcccCCCCCCCCCCCCCCC
Q 040937 314 ELDCPFYLKTGSCKYGSTCRYNHPERT 340 (508)
Q Consensus 314 ~~~C~~y~ktG~Ck~G~~Crf~Hp~~~ 340 (508)
.+.|+|-- .|.||.+|+|.||++.
T Consensus 192 ~~~~~~~~---~~~~~~~~~~~~~~~~ 215 (223)
T 3v33_A 192 KQPCPYGR---KCTYGIKCRFFHPERP 215 (223)
T ss_dssp ---------------------------
T ss_pred CCCCCCCc---ccccCCcceecCCccC
Confidence 57899853 5999999999999874
No 29
>2kqb_A Aprataxin and PNK-like factor; ADP-ribosylation, DNA damage, DNA repair, metal-binding, nucleotide-binding, nucleus, zinc, zinc-finger, lyase; NMR {Homo sapiens} PDB: 2kqc_A 2kqd_A* 2kqe_A*
Probab=20.52 E-value=52 Score=26.97 Aligned_cols=12 Identities=33% Similarity=0.891 Sum_probs=0.0
Q ss_pred cccCCCCCCCCC
Q 040937 458 GTCKYGATCKFD 469 (508)
Q Consensus 458 G~C~fG~~C~f~ 469 (508)
-.|+||.+|.-.
T Consensus 57 p~C~YG~~CYRk 68 (89)
T 2kqb_A 57 PECPYGPSCYRK 68 (89)
T ss_dssp ------------
T ss_pred CCCCCchhhhcC
Confidence 579999999643
Done!