BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040938
(487 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1AOZ|A Chain A, Refined Crystal Structure Of Ascorbate Oxidase At 1.9
Angstroms Resolution
pdb|1AOZ|B Chain B, Refined Crystal Structure Of Ascorbate Oxidase At 1.9
Angstroms Resolution
pdb|1ASO|A Chain A, X-Ray Structures And Mechanistic Implications Of Three
Functional Derivatives Of Ascorbate Oxidase From
Zucchini: Reduced-, Peroxide-, And Azide-Forms
pdb|1ASO|B Chain B, X-Ray Structures And Mechanistic Implications Of Three
Functional Derivatives Of Ascorbate Oxidase From
Zucchini: Reduced-, Peroxide-, And Azide-Forms
pdb|1ASP|A Chain A, X-ray Structures And Mechanistic Implications Of Three
Functional Derivatives Of Ascorbate Oxidase From
Zucchini: Reduced-, Peroxide-, And Azide-forms
pdb|1ASP|B Chain B, X-ray Structures And Mechanistic Implications Of Three
Functional Derivatives Of Ascorbate Oxidase From
Zucchini: Reduced-, Peroxide-, And Azide-forms
pdb|1ASQ|A Chain A, X-Ray Structures And Mechanistic Implications Of Three
Functional Derivatives Of Ascorbate Oxidase From
Zucchini: Reduced-, Peroxide-, And Azide-Forms
pdb|1ASQ|B Chain B, X-Ray Structures And Mechanistic Implications Of Three
Functional Derivatives Of Ascorbate Oxidase From
Zucchini: Reduced-, Peroxide-, And Azide-Forms
Length = 552
Score = 161 bits (407), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 135/490 (27%), Positives = 210/490 (42%), Gaps = 63/490 (12%)
Query: 1 HGVRQLRSGWADGPAYITQCPIQTGQSYVYNFTVTGQRGTLFWHAHISWLR-ATLYGPIV 59
HG+ Q + WADG A I+QC I G+++ YNFTV GT F+H H+ R A LYG ++
Sbjct: 62 HGILQRGTPWADGTASISQCAINPGETFFYNFTVD-NPGTFFYHGHLGMQRSAGLYGSLI 120
Query: 60 ILPKRHASYPFPQPFKEVPMIFGEWWKADTEKIINQALQTGAAP---------------- 103
+ P + PF E+ ++ +WW K Q + + P
Sbjct: 121 VDPPQGKKEPFHYD-GEINLLLSDWWHQSIHK---QEVGLSSKPIRWIGEPQTILLNGRG 176
Query: 104 ----NISDAFTINGLPGPLYNCSAKDTFKLKVKPGKTYLLRMINAALNDELFFSIANHTL 159
+I+ + N P L + + V P KTY +R+ + L F+I NH L
Sbjct: 177 QFDCSIAAKYDSNLEPCKLKGSESCAPYIFHVSPKKTYRIRIASTTALAALNFAIGNHQL 236
Query: 160 TVVETDAVYVKPIKTKVVLITPGQTTNVLLKAKHKSPNASFLIAARPYATGPASFDNTTT 219
VVE D YV+P T + I G++ +VL+ ++P+ ++ ++ A P + T
Sbjct: 237 LVVEADGNYVQPFYTSDIDIYSGESYSVLITTD-QNPSENYWVSVGTRARHPNTPPGLTL 295
Query: 220 AGVLEYEQXXXXXXXXXXXXXXXXXXXFNDTNFAMQFSKKIR-SLATAKFPAKVPRKVDR 278
L ++D + + F+ +I ++ + K P K R R
Sbjct: 296 LNYLP------NSVSKLPTSPPPQTPAWDDFDRSKNFTYRITAAMGSPKPPVKFNR---R 346
Query: 279 LFFFTVGLGLSPCPQNQTCQGPNNTMLAASINNVSFAQPNIALLQAHFFNKSKGVYTTDF 338
+F Q N + +IN+VS A P L A +N F
Sbjct: 347 IFLLNT-------------QNVINGYVKWAINDVSLALPPTPYLGAMKYNLLHA-----F 388
Query: 339 PANPP---FKFNYT-GTPPSNIMVSSGTRAVALPFNASVEVVMQDTSIIG---AESHPLH 391
NPP F +Y TPP+N G V+V++Q+ +++ +E+HP H
Sbjct: 389 DQNPPPEVFPEDYDIDTPPTNEKTRIGNGVYQFKIGEVVDVILQNANMMKENLSETHPWH 448
Query: 392 LHXXXXXXXXXXXXXXDPSKDPAKFNLVDPAERNTVGVPSGGWVAIRFLADNPGAWFMHC 451
LH +++ + NL +P RNTV + GW AIRF+ADNPG W HC
Sbjct: 449 LHGHDFWVLGYGDGKFS-AEEESSLNLKNPPLRNTVVIFPYGWTAIRFVADNPGVWAFHC 507
Query: 452 HLEVHTSWGL 461
H+E H G+
Sbjct: 508 HIEPHLHMGM 517
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 439 FLADNPGAWFMHCHLEVHTSWGLKMAWIVN 468
F DNPG +F H HL + S GL + IV+
Sbjct: 93 FTVDNPGTFFYHGHLGMQRSAGLYGSLIVD 122
>pdb|3T6V|A Chain A, Crystal Structure Of Laccase From Steccherinum Ochraceum
pdb|3T6V|B Chain B, Crystal Structure Of Laccase From Steccherinum Ochraceum
pdb|3T6V|C Chain C, Crystal Structure Of Laccase From Steccherinum Ochraceum
pdb|3T6W|A Chain A, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (10% Dose)
pdb|3T6W|B Chain B, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (10% Dose)
pdb|3T6W|C Chain C, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (10% Dose)
pdb|3T6X|A Chain A, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (20% Dose)
pdb|3T6X|B Chain B, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (20% Dose)
pdb|3T6X|C Chain C, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (20% Dose)
pdb|3T6Z|A Chain A, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (60% Dose)
pdb|3T6Z|B Chain B, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (60% Dose)
pdb|3T6Z|C Chain C, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (60% Dose)
pdb|3T71|A Chain A, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (90% Dose)
pdb|3T71|B Chain B, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (90% Dose)
pdb|3T71|C Chain C, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (90% Dose)
Length = 495
Score = 130 bits (327), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 120/469 (25%), Positives = 192/469 (40%), Gaps = 72/469 (15%)
Query: 1 HGVRQLRSGWADGPAYITQCPIQTGQSYVYNFTVTGQRGTLFWHAHISWLRAT-LYGPIV 59
HG Q + WADGPA+ITQCPI G S+ YNF V G GT ++H+H++ L GP V
Sbjct: 67 HGEFQKGTNWADGPAFITQCPIIVGNSFSYNFNVPGMAGTYWYHSHLTTQYCDGLRGPFV 126
Query: 60 IL-PKRHASYPFPQPFKEVPMIFGEWWKADTEKIINQALQTGAAPNISDAFTINGLPGPL 118
+ P + + + +W+ ++ + + G A +D+ I+GL
Sbjct: 127 VYDPNDPDANLYDVDDDTTIITLADWY-----HVLAKEMGAGGAIT-ADSTLIDGLGRTH 180
Query: 119 YNCSAKDTFKLKVKPGKTYLLRMINAALNDELFFSIANHTLTVVETDAVYVKPIKTKVVL 178
N +A + V+ GK Y +R+++ + + FSI H +T++ETD V + + +
Sbjct: 181 VNVAAVPLSVITVEVGKRYRMRLVSISCDPNYDFSIDGHDMTIIETDGVDSQELTVDEIQ 240
Query: 179 ITPGQTTNVLLKAKHKSPNASFLIAARPYATGPASFDNTTTAGVLEYEQXXXXXXXXXXX 238
I Q + +L A P ++ I A P + G FD + +L Y+
Sbjct: 241 IFAAQRYSFVLNANQ--PVGNYWIRANPNSGGEG-FDGGINSAILRYDG----------- 286
Query: 239 XXXXXXXXFNDTNFAMQFSKKIRSLATAKFPAKVPRKVDRLFFFTVGLGLSPCPQNQTCQ 298
AT P V V L P +N
Sbjct: 287 -------------------------ATTADPVTVASTVHTKCLIET--DLHPLSRNGVPG 319
Query: 299 GPNNTMLAASIN-NVSFAQPNIALLQAHFFNKSKGVYTTDFPANPPFKFNYTGTPPSNIM 357
P+ ++N ++ FA N + GV T P P +G + +
Sbjct: 320 NPHQGGADCNLNLSLGFACGNFVI---------NGVSFTP-PTVPVLLQICSGANTAADL 369
Query: 358 VSSGTRAVALPFNASVEVVMQDTSIIGAESHPLHLHXXXXXXXXXXXXXXDPSKDPAKFN 417
+ SG+ ++LP N+++E+ + + G HP HLH S + N
Sbjct: 370 LPSGS-VISLPSNSTIEIALPAGAAGGP--HPFHLHGHDFAVSE--------SASNSTSN 418
Query: 418 LVDPAERNTVGVPS-GGWVAIRFLADNPGAWFMHCHLEVHTSWGLKMAW 465
DP R+ V + G V IRF DNPG WF+HCH++ H G + +
Sbjct: 419 YDDPIWRDVVSIGGVGDNVTIRFCTDNPGPWFLHCHIDWHLDAGFAIVF 467
>pdb|2XYB|A Chain A, Crystal Structure Of A Fully Functional Laccase From The
Ligninolytic Fungus Pycnoporus Cinnabarinus
Length = 497
Score = 129 bits (324), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 127/475 (26%), Positives = 197/475 (41%), Gaps = 89/475 (18%)
Query: 1 HGVRQLRSGWADGPAYITQCPIQTGQSYVYNFTVTGQRGTLFWHAHISWLRAT-LYGPIV 59
HG Q + WADGPA++ QCPI +G S++Y+F V Q GT ++H+H+S L GP V
Sbjct: 66 HGFFQQGTNWADGPAFVNQCPIASGHSFLYDFQVPDQAGTFWYHSHLSTQYCDGLRGPFV 125
Query: 60 ILPKR--HASYPFPQPFKEVPMIFGEWWKADTEKIINQALQTGAA-PNISDAFTINGLPG 116
+ HAS + + + +W+ A + G P SD+ INGL G
Sbjct: 126 VYDPNDPHASL-YDIDNDDTVITLADWYHV--------AAKLGPRFPFGSDSTLINGL-G 175
Query: 117 PLYNCSAKDTFKLKVKPGKTYLLRMINAALNDELFFSIANHTLTVVETDAVYVKPIKTKV 176
+ D +KV GK Y R+++ + + FSI NHT+T++E D++ +P++
Sbjct: 176 RTTGIAPSDLAVIKVTQGKRYRFRLVSLSCDPNHTFSIDNHTMTIIEADSINTQPLEVDS 235
Query: 177 VLITPGQTTNVLLKAKHKSPNASFLIAARPYATGPASFDNTTTAGVLEYEQXXXXXXXXX 236
+ I Q + +L A P ++ I A P +F NT AG +
Sbjct: 236 IQIFAAQRYSFVLDASQ--PVDNYWIRANP------AFGNTGFAGGI------------- 274
Query: 237 XXXXXXXXXXFNDTNFAMQFSKKIRSLATAKFPAKVPRKVDRLFFFTVGLGLSPCPQNQT 296
N + +I + P K +VD + + SP P
Sbjct: 275 -----------NSAILRYDGAPEIEPTSVQTTPTKPLNEVDLHPLSPMPVPGSPEPGG-- 321
Query: 297 CQGPNNTMLAAS-----INNVSFAQPNI-ALLQAHFFNKSKGVYTTDFPANPPFKFNYTG 350
P N + + IN+ +F P++ LLQ +G
Sbjct: 322 VDKPLNLVFNFNGTNFFINDHTFVPPSVPVLLQI-----------------------LSG 358
Query: 351 TPPSNIMVSSGTRAVALPFNASVEVVMQDTSIIGAESHPLHLHXXXXXXXXXXXXXXDPS 410
+ +V G+ V LP N+S+E+ T+ HP HLH S
Sbjct: 359 AQAAQDLVPEGSVFV-LPSNSSIEISFPATANAPGFPHPFHLHGHAFAVVR--------S 409
Query: 411 KDPAKFNLVDPAERNTV--GVPSGGWVAIRFLADNPGAWFMHCHLEVHTSWGLKM 463
+ +N +P R+ V G P G V IRF +NPG WF+HCH++ H G +
Sbjct: 410 AGSSVYNYDNPIFRDVVSTGQP-GDNVTIRFETNNPGPWFLHCHIDFHLDAGFAV 463
>pdb|1GYC|A Chain A, Crystal Structure Determination At Room Temperature Of A
Laccase From Trametes Versicolor In Its Oxidised Form
Containing A Full Complement Of Copper Ions
Length = 499
Score = 127 bits (320), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 121/472 (25%), Positives = 185/472 (39%), Gaps = 77/472 (16%)
Query: 1 HGVRQLRSGWADGPAYITQCPIQTGQSYVYNFTVTGQRGTLFWHAHISWLRAT-LYGPIV 59
HG Q + WADGPA++ QCPI +G S++Y+F V Q GT ++H+H+S L GP V
Sbjct: 66 HGFFQAGTNWADGPAFVNQCPIASGHSFLYDFHVPDQAGTFWYHSHLSTQYCDGLRGPFV 125
Query: 60 IL-PKRHASYPFPQPFKEVPMIFGEWWKADTEKIINQALQTGAAPNISDAFTINGLPGPL 118
+ PK + + + + +W+ T + GA DA INGL G
Sbjct: 126 VYDPKDPHASRYDVDNESTVITLTDWYH--TAARLGPRFPLGA-----DATLINGL-GRS 177
Query: 119 YNCSAKDTFKLKVKPGKTYLLRMINAALNDELFFSIANHTLTVVETDAVYVKPIKTKVVL 178
+ + V+ GK Y R+++ + + FSI H LTV+E D + +P+ +
Sbjct: 178 ASTPTAALAVINVQHGKRYRFRLVSISCDPNYTFSIDGHNLTVIEVDGINSQPLLVDSIQ 237
Query: 179 ITPGQTTNVLLKAKHKSPNASFLIAARPYATGPASFDNTTTAGVLEYEQXXXXXXXXXXX 238
I Q + +L A N + I A P G F + +L Y+
Sbjct: 238 IFAAQRYSFVLNANQTVGN--YWIRANP-NFGTVGFAGGINSAILRYQGAPVAEPTTTQT 294
Query: 239 XXXXXXXXFNDTNFAMQFSKKIRSLATAKFPAK-VPRKVDRLFFFTVGLGLSPCPQNQTC 297
T+ + LA P P VD+
Sbjct: 295 -----------TSVIPLIETNLHPLARMPVPGSPTPGGVDKALNLAFNF----------- 332
Query: 298 QGPNNTMLAASINNVSFAQPNI-ALLQAHFFNKSKGVYTTDFPANPPFKFNYTGTPPSNI 356
N T INN SF P + LLQ +G +
Sbjct: 333 ---NGTNFF--INNASFTPPTVPVLLQI-----------------------LSGAQTAQD 364
Query: 357 MVSSGTRAVALPFNASVEVVMQDTSIIGAESHPLHLHXXXXXXXXXXXXXXDPSKDPAKF 416
++ +G+ LP ++++E+ + T++ HP HLH S +
Sbjct: 365 LLPAGS-VYPLPAHSTIEITLPATALAPGAPHPFHLHGHAFAVVR--------SAGSTTY 415
Query: 417 NLVDPAERNTV--GVPSGGW-VAIRFLADNPGAWFMHCHLEVHTSWGLKMAW 465
N DP R+ V G P+ G V IRF DNPG WF+HCH++ H G + +
Sbjct: 416 NYNDPIFRDVVSTGTPAAGDNVTIRFQTDNPGPWFLHCHIDFHLEAGFAIVF 467
>pdb|2H5U|A Chain A, Crystal Structure Of Laccase From Cerrena Maxima At 1.9a
Resolution
Length = 499
Score = 123 bits (309), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 127/471 (26%), Positives = 190/471 (40%), Gaps = 79/471 (16%)
Query: 1 HGVRQLRSGWADGPAYITQCPIQTGQSYVYNFTVTGQRGTLFWHAHISWLRAT-LYGPIV 59
HG Q + WADGPA+I QCPI G S++Y+F V Q GT ++H+H+S L GP V
Sbjct: 66 HGFFQQGTNWADGPAFINQCPISPGHSFLYDFQVPNQAGTFWYHSHLSTQYCDGLRGPFV 125
Query: 60 ILPKR--HASYPFPQPFKEVPMIFGEWWKADTEKIINQALQTGAA-PNISDAFTINGLPG 116
+ HAS + + + +W+ A + G A PN +D+ ING
Sbjct: 126 VYDPNDPHASR-YDVDNDDTTITLADWYHT--------AAKLGPAFPNGADSTLINGKGR 176
Query: 117 PLYNCSAKDTFKLKVKPGKTYLLRMINAALNDELFFSIANHTLTVVETDAVYVKPIKTKV 176
+ SA+ + + V GK R+++ + + FSI H T++ETD+V +P+ T
Sbjct: 177 APSDSSAQLSV-VSVTKGKRXRFRLVSLSCDPNFTFSIDGHNNTIIETDSVNSQPLNTDS 235
Query: 177 VLITPGQTTNVLLKAKHKSPNASFLIAARPYATGPASFDNTTTAGVLEYEQXXXXXXXXX 236
+ I Q + L A N + I A P G F+ + +L Y+
Sbjct: 236 IQIFAAQRYSFTLNANQAVDN--YWIRANP-NFGNVGFNGGINSAILRYD---GAPAVEP 289
Query: 237 XXXXXXXXXXFNDTNFAMQFSKKIRSLATAKFPAKVPRKVDRLFFFTVGLGLSPCPQNQT 296
N+TN S + A V + ++ F F
Sbjct: 290 TTNQSTSTQPLNETNLHPLVSTPVPGSPAA---GGVDKAINMAFNF-------------- 332
Query: 297 CQGPNNTMLAASINNVSFAQPNI-ALLQAHFFNKSKGVYTTDFPANPPFKFNYTGTPPSN 355
G N IN SF P++ LLQ +G +
Sbjct: 333 -NGSN-----FFINGASFTPPSVPVLLQI-----------------------LSGAQTAQ 363
Query: 356 IMVSSGTRAVALPFNASVEVVMQDTSIIGAESHPLHLHXXXXXXXXXXXXXXDPSKDPAK 415
++ SG+ LP NAS+E+ T+ HP HLH S
Sbjct: 364 DLLPSGS-VXTLPSNASIEISFPATAAAPGAPHPFHLHGHVFAVVR--------SAGSTV 414
Query: 416 FNLVDPAERNTV--GVPSGGW-VAIRFLADNPGAWFMHCHLEVHTSWGLKM 463
+N +P R+ V G P+ G V IRFL +NPG WF+HCH++ H G +
Sbjct: 415 YNYSNPIFRDVVSTGTPAAGDNVTIRFLTNNPGPWFLHCHIDFHLEGGFAV 465
>pdb|1V10|A Chain A, Structure Of Rigidoporus Lignosus Laccase From
Hemihedrally Twinned Crystals
Length = 521
Score = 122 bits (306), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 120/470 (25%), Positives = 188/470 (40%), Gaps = 74/470 (15%)
Query: 1 HGVRQLRSGWADGPAYITQCPIQTGQSYVYNFTVTGQRGTLFWHAHISWLRAT-LYGPIV 59
HG Q + DGPA++ QCPI +S+VY+F V GQ GT ++H+H+S L G V
Sbjct: 87 HGFFQAGTTEMDGPAFVNQCPIIPNESFVYDFVVPGQAGTYWYHSHLSTQYCDGLRGAFV 146
Query: 60 IL-PKRHASYPFPQPFKEVPMIFGEWWKADTEKIINQALQTGAAPNISDAFTINGLPGPL 118
+ P + + +W+ + + + + A D INGL
Sbjct: 147 VYDPNDPHLSLYDVDDASTVITIADWYHSLSTVLFPNPNKAPPA---PDTTLINGLGRNS 203
Query: 119 YNCSAKDTFKLKVKPGKTYLLRMINAALNDELFFSIANHTLTVVETDAVYVKPIKTKVVL 178
N SA + V+ GK Y R+++ + FSI H +TV+E D V +P+ +
Sbjct: 204 ANPSAGQLAVVSVQSGKRYRFRIVSTSCFPNYAFSIDGHRMTVIEVDGVSHQPLTVDSLT 263
Query: 179 ITPGQTTNVLLKAKHKSPNASFLIAARPYATGPASFDNTTTAGVLEYEQXXXXXXXXXXX 238
I GQ +V+++A N + I A P + G F + + Y+
Sbjct: 264 IFAGQRYSVVVEANQAVGN--YWIRANP-SNGRNGFTGGINSAIFRYQGAAVAEPTTS-- 318
Query: 239 XXXXXXXXFNDTNFAMQFSKKIRSLATAKFPAKVPRKVDRLFFFTVGLGLSPCPQNQTCQ 298
++ A+ + I + VP D + L L
Sbjct: 319 ---------QNSGTALNEANLIPLINPGAPGNPVPGGAD------INLNLR--------I 355
Query: 299 GPNNTMLAASINNVSFAQPNIALLQAHFFNKSKGVYTTDFPANPPFKFNYTGTPPSNIMV 358
G N T +IN F P + +L GV T P++++
Sbjct: 356 GRNATTADFTINGAPFIPPTVPVL----LQILSGV-----------------TNPNDLL- 393
Query: 359 SSGTRAVALPFNASVEVVMQDTSIIGAESHPLHLHXXXXXXXXXXXXXXDPSKDPAK--F 416
G ++LP N +E+ SI G +HP HLH D + P +
Sbjct: 394 -PGGAVISLPANQVIEI-----SIPGGGNHPFHLH----------GHNFDVVRTPGSSVY 437
Query: 417 NLVDPAERNTVGVPSGGW-VAIRFLADNPGAWFMHCHLEVHTSWGLKMAW 465
N V+P R+ V + GG V RF+ DNPG WF+HCH++ H GL + +
Sbjct: 438 NYVNPVRRDVVSIGGGGDNVTFRFVTDNPGPWFLHCHIDWHLEAGLAVVF 487
>pdb|4A2F|A Chain A, Coriolopsis Gallica Laccase Collected At 12.65 Kev
Length = 497
Score = 108 bits (269), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 75/229 (32%), Positives = 113/229 (49%), Gaps = 16/229 (6%)
Query: 1 HGVRQLRSGWADGPAYITQCPIQTGQSYVYNFTVTGQRGTLFWHAHISWLRAT-LYGPIV 59
HG Q + WADGPA++ QCPI TG +++Y+F V Q GT ++H+H+S L GPIV
Sbjct: 66 HGFFQHGTNWADGPAFVNQCPISTGHAFLYDFQVPDQAGTFWYHSHLSTQYCDGLRGPIV 125
Query: 60 ILPKR--HASYPFPQPFKEVPMIFGEWWKADTEKIINQALQTGAAPNISDAFTINGLPGP 117
+ HAS + + +W+ + A + GA +DA INGL G
Sbjct: 126 VYDPNDPHASL-YDVDDDSTVITLADWY--------HLAAKVGAPVPTADATLINGL-GR 175
Query: 118 LYNCSAKDTFKLKVKPGKTYLLRMINAALNDELFFSIANHTLTVVETDAVYVKPIKTKVV 177
A D + V GK Y R+++ + + FSI H+LTV+E D+V +KP +
Sbjct: 176 SAATLAADLAVITVTKGKRYRFRLVSLSCDPNYTFSIDGHSLTVIEADSVNLKPHTVDSL 235
Query: 178 LITPGQTTNVLLKAKHKSPNASFLIAARPYATGPASFDNTTTAGVLEYE 226
I Q + +L A N + I A P +G +F T + +L Y+
Sbjct: 236 QIFAAQRYSFVLNADQDVDN--YWIRALP-NSGTQNFAGGTNSAILRYD 281
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 47/100 (47%), Gaps = 11/100 (11%)
Query: 366 ALPFNASVEVVMQDTSIIGAESHPLHLHXXXXXXXXXXXXXXDPSKDPAKFNLVDPAERN 425
+LP NA +E+ + T+ HP HLH S + +N +P R+
Sbjct: 372 SLPANADIEISLPATAAAPGFPHPFHLHGHVFAVVR--------SAGSSTYNYANPVYRD 423
Query: 426 TV--GVPSGGWVAIRFLADNPGAWFMHCHLEVHTSWGLKM 463
V G P G V IRF DNPG WF+HCH++ H G +
Sbjct: 424 VVSTGAP-GDNVTIRFRTDNPGPWFLHCHIDFHLEAGFAV 462
>pdb|4A2D|A Chain A, Coriolopsis Gallica Laccase T2 Copper Depleted At Ph 4.5
pdb|4A2E|A Chain A, Crystal Structure Of A Coriolopsis Gallica Laccase At 1.7
A Resolution Ph 5.5
pdb|4A2H|A Chain A, Crystal Structure Of Laccase From Coriolopsis Gallica Ph
7.0
pdb|4A2G|A Chain A, Coriolopsis Gallica Laccase Collected At 8.98 Kev
Length = 496
Score = 108 bits (269), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 75/229 (32%), Positives = 113/229 (49%), Gaps = 16/229 (6%)
Query: 1 HGVRQLRSGWADGPAYITQCPIQTGQSYVYNFTVTGQRGTLFWHAHISWLRAT-LYGPIV 59
HG Q + WADGPA++ QCPI TG +++Y+F V Q GT ++H+H+S L GPIV
Sbjct: 66 HGFFQHGTNWADGPAFVNQCPISTGHAFLYDFQVPDQAGTFWYHSHLSTQYCDGLRGPIV 125
Query: 60 ILPKR--HASYPFPQPFKEVPMIFGEWWKADTEKIINQALQTGAAPNISDAFTINGLPGP 117
+ HAS + + +W+ + A + GA +DA INGL G
Sbjct: 126 VYDPNDPHASL-YDVDDDSTVITLADWY--------HLAAKVGAPVPTADATLINGL-GR 175
Query: 118 LYNCSAKDTFKLKVKPGKTYLLRMINAALNDELFFSIANHTLTVVETDAVYVKPIKTKVV 177
A D + V GK Y R+++ + + FSI H+LTV+E D+V +KP +
Sbjct: 176 SAATLAADLAVITVTKGKRYRFRLVSLSCDPNYTFSIDGHSLTVIEADSVNLKPHTVDSL 235
Query: 178 LITPGQTTNVLLKAKHKSPNASFLIAARPYATGPASFDNTTTAGVLEYE 226
I Q + +L A N + I A P +G +F T + +L Y+
Sbjct: 236 QIFAAQRYSFVLNADQDVDN--YWIRALP-NSGTQNFAGGTNSAILRYD 281
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 47/100 (47%), Gaps = 11/100 (11%)
Query: 366 ALPFNASVEVVMQDTSIIGAESHPLHLHXXXXXXXXXXXXXXDPSKDPAKFNLVDPAERN 425
+LP NA +E+ + T+ HP HLH S + +N +P R+
Sbjct: 372 SLPANADIEISLPATAAAPGFPHPFHLHGHVFAVVR--------SAGSSTYNYANPVYRD 423
Query: 426 TV--GVPSGGWVAIRFLADNPGAWFMHCHLEVHTSWGLKM 463
V G P G V IRF DNPG WF+HCH++ H G +
Sbjct: 424 VVSTGAP-GDNVTIRFRTDNPGPWFLHCHIDFHLEAGFAV 462
>pdb|2HRG|A Chain A, Crystal Structure Of Blue Laccase From Trametes Trogii
Complexed With P-Methylbenzoate
pdb|2HRH|A Chain A, Crystal Strucure Of Blue Laccase From Trametes Trogii
Length = 496
Score = 107 bits (268), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 71/228 (31%), Positives = 112/228 (49%), Gaps = 14/228 (6%)
Query: 1 HGVRQLRSGWADGPAYITQCPIQTGQSYVYNFTVTGQRGTLFWHAHISWLRAT-LYGPIV 59
HG Q + WADGPA++ QCPI TG +++Y+F V Q GT ++H+H+S L GPIV
Sbjct: 66 HGFFQHGTNWADGPAFVNQCPISTGHAFLYDFQVPDQAGTFWYHSHLSTQYCDGLRGPIV 125
Query: 60 IL-PKRHASYPFPQPFKEVPMIFGEWWKADTEKIINQALQTGAAPNISDAFTINGLPGPL 118
+ P+ + + +W+ + A + G+ +DA INGL G
Sbjct: 126 VYDPQDPHKSLYDVDDDSTVITLADWY--------HLAAKVGSPVPTADATLINGL-GRS 176
Query: 119 YNCSAKDTFKLKVKPGKTYLLRMINAALNDELFFSIANHTLTVVETDAVYVKPIKTKVVL 178
+ D + V GK Y R+++ + + FSI H+LTV+E D+V +KP +
Sbjct: 177 IDTLNADLAVITVTKGKRYRFRLVSLSCDPNHVFSIDGHSLTVIEADSVNLKPQTVDSIQ 236
Query: 179 ITPGQTTNVLLKAKHKSPNASFLIAARPYATGPASFDNTTTAGVLEYE 226
I Q + +L A N + I A P +G +FD + +L Y+
Sbjct: 237 IFAAQRYSFVLNADQDVGN--YWIRALP-NSGTRNFDGGVNSAILRYD 281
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 54/116 (46%), Gaps = 10/116 (8%)
Query: 349 TGTPPSNIMVSSGTRAVALPFNASVEVVMQDTSIIGAESHPLHLHXXXXXXXXXXXXXXD 408
+G + ++ SG+ +LP NA +E+ + T+ HP HLH
Sbjct: 356 SGAQSAQDLLPSGS-VYSLPANADIEISLPATAAAPGFPHPFHLHGHTFAVVR------- 407
Query: 409 PSKDPAKFNLVDPAERNTVGVPS-GGWVAIRFLADNPGAWFMHCHLEVHTSWGLKM 463
S + +N +P R+ V S G V IRF DNPG WF+HCH++ H G +
Sbjct: 408 -SAGSSTYNYENPVYRDVVSTGSPGDNVTIRFRTDNPGPWFLHCHIDFHLEAGFAV 462
>pdb|2QT6|A Chain A, Crystal Structure Determination Of A Blue Laccase From
Lentinus Tigrinus
pdb|2QT6|B Chain B, Crystal Structure Determination Of A Blue Laccase From
Lentinus Tigrinus
Length = 498
Score = 103 bits (258), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 70/230 (30%), Positives = 109/230 (47%), Gaps = 15/230 (6%)
Query: 1 HGVRQLRSGWADGPAYITQCPIQTGQSYVYNFTVTGQRGTLFWHAHISWLRAT-LYGPIV 59
HG Q + WADGPA+I QCPI +G S++Y+F V GQ GT ++H+H+S L GP V
Sbjct: 66 HGFFQKGTNWADGPAFINQCPIASGNSFLYDFQVPGQAGTFWYHSHLSTQYCDGLRGPFV 125
Query: 60 IL-PKRHASYPFPQPFKEVPMIFGEWWKADTEKIINQALQTGAA-PNISDAFTINGLPGP 117
+ P + + + + +W+ A + G P +D+ INGL G
Sbjct: 126 VYDPNDPHANLYDVDDESTVITLADWYHV--------AAKLGPRFPKGADSTLINGL-GR 176
Query: 118 LYNCSAKDTFKLKVKPGKTYLLRMINAALNDELFFSIANHTLTVVETDAVYVKPIKTKVV 177
+ D + V GK Y R+++ + + FSI +H LTV+E D V +P+ +
Sbjct: 177 STSTPTADLAVISVTKGKRYRFRLVSLSCDPNYTFSIDSHQLTVIEADGVSTQPVTVDSI 236
Query: 178 LITPGQTTNVLLKAKHKSPNASFLIAARPYATGPASFDNTTTAGVLEYEQ 227
I Q + +L A N + I A P G F + + +L Y+
Sbjct: 237 QIFAAQRYSFVLNANQDVDN--YWIRANP-NFGTTGFADGVNSAILRYDD 283
Score = 61.6 bits (148), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 47/101 (46%), Gaps = 11/101 (10%)
Query: 366 ALPFNASVEVVMQDTSIIGAESHPLHLHXXXXXXXXXXXXXXDPSKDPAKFNLVDPAERN 425
+LP N+S+E+ T+ HP HLH S +N DP R+
Sbjct: 372 SLPSNSSIEITFPATTAAPGAPHPFHLHGHVFAVVR--------SAGSTSYNYDDPVWRD 423
Query: 426 TV--GVP-SGGWVAIRFLADNPGAWFMHCHLEVHTSWGLKM 463
V G P +G V IRF DNPG WF+HCH++ H G +
Sbjct: 424 VVSTGTPQAGDNVTIRFQTDNPGPWFLHCHIDFHLDAGFAV 464
>pdb|3FPX|A Chain A, Native Fungus Laccase From Trametes Hirsuta
pdb|3V9C|A Chain A, Type-2 Cu-Depleted Fungus Laccase From Trametes Hirsuta At
Low Dose Of Ionization Radiation
Length = 499
Score = 103 bits (258), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 73/230 (31%), Positives = 110/230 (47%), Gaps = 17/230 (7%)
Query: 1 HGVRQLRSGWADGPAYITQCPIQTGQSYVYNFTVTGQRGTLFWHAHISWLRAT-LYGPIV 59
HG Q + WADGPA+I QCPI G S++Y+F V Q GT ++H+H+S L GP V
Sbjct: 66 HGFFQHGTNWADGPAFINQCPISPGHSFLYDFQVPDQAGTFWYHSHLSTQYCDGLRGPFV 125
Query: 60 ILPKR--HASYPFPQPFKEVPMIFGEWWKADTEKIINQALQTGAA-PNISDAFTINGLPG 116
+ HAS + + + +W+ A + G P +DA ING G
Sbjct: 126 VYDPNDPHASR-YDVDNDDTVITLADWYHT--------AAKLGPRFPGGADATLING-KG 175
Query: 117 PLYNCSAKDTFKLKVKPGKTYLLRMINAALNDELFFSIANHTLTVVETDAVYVKPIKTKV 176
+ S + +KV GK Y R+++ + N FSI H LT++E D+V +P++
Sbjct: 176 RAPSDSVAELSVIKVTKGKRYRFRLVSLSCNPNHTFSIDGHNLTIIEVDSVNSQPLEVDS 235
Query: 177 VLITPGQTTNVLLKAKHKSPNASFLIAARPYATGPASFDNTTTAGVLEYE 226
+ I Q + +L A N + I A P G FD + +L Y+
Sbjct: 236 IQIFAAQRYSFVLDANQAVDN--YWIRANP-NFGNVGFDGGINSAILRYD 282
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 55/118 (46%), Gaps = 12/118 (10%)
Query: 349 TGTPPSNIMVSSGTRAVALPFNASVEVVMQDTSIIGAESHPLHLHXXXXXXXXXXXXXXD 408
+G + ++ SG+ V LP NAS+E+ T+ HP HLH
Sbjct: 357 SGAQTAQDLLPSGSVYV-LPSNASIEISFPATAAAPGAPHPFHLHGHTFAVVR------- 408
Query: 409 PSKDPAKFNLVDPAERNTV--GVPSGGW-VAIRFLADNPGAWFMHCHLEVHTSWGLKM 463
S +N +P R+ V G P+ G V IRF +NPG WF+HCH++ H G +
Sbjct: 409 -SAGSTVYNYDNPIFRDVVSTGTPAAGDNVTIRFDTNNPGPWFLHCHIDFHLEGGFAV 465
>pdb|3PXL|A Chain A, Type-2 Cu-Depleted Fungus Laccase From Trametes Hirsuta
Length = 499
Score = 103 bits (257), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 73/230 (31%), Positives = 110/230 (47%), Gaps = 17/230 (7%)
Query: 1 HGVRQLRSGWADGPAYITQCPIQTGQSYVYNFTVTGQRGTLFWHAHISWLRAT-LYGPIV 59
HG Q + WADGPA+I QCPI G S++Y+F V Q GT ++H+H+S L GP V
Sbjct: 66 HGFFQHGTNWADGPAFINQCPISPGHSFLYDFQVPDQAGTFWYHSHLSTQYCDGLRGPFV 125
Query: 60 ILPKR--HASYPFPQPFKEVPMIFGEWWKADTEKIINQALQTGAA-PNISDAFTINGLPG 116
+ HAS + + + +W+ A + G P +DA ING G
Sbjct: 126 VYDPNDPHASR-YDVDNDDTVITLADWYHT--------AAKLGPRFPGGADATLING-KG 175
Query: 117 PLYNCSAKDTFKLKVKPGKTYLLRMINAALNDELFFSIANHTLTVVETDAVYVKPIKTKV 176
+ S + +KV GK Y R+++ + N FSI H LT++E D+V +P++
Sbjct: 176 RAPSDSVAELSVIKVTKGKRYRFRLVSLSCNPNHTFSIDGHNLTIIEVDSVNSQPLEVDS 235
Query: 177 VLITPGQTTNVLLKAKHKSPNASFLIAARPYATGPASFDNTTTAGVLEYE 226
+ I Q + +L A N + I A P G FD + +L Y+
Sbjct: 236 IQIFAAQRYSFVLDANQAVDN--YWIRANP-NFGNVGFDGGINSAILRYD 282
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 55/118 (46%), Gaps = 12/118 (10%)
Query: 349 TGTPPSNIMVSSGTRAVALPFNASVEVVMQDTSIIGAESHPLHLHXXXXXXXXXXXXXXD 408
+G + ++ SG+ V LP NAS+E+ T+ HP HLH
Sbjct: 357 SGAQTAQDLLPSGSVYV-LPSNASIEISFPATAAAPGAPHPFHLHGHTFAVVR------- 408
Query: 409 PSKDPAKFNLVDPAERNTV--GVPSGGW-VAIRFLADNPGAWFMHCHLEVHTSWGLKM 463
S +N +P R+ V G P+ G V IRF +NPG WF+HCH++ H G +
Sbjct: 409 -SAGSTVYNYDNPIFRDVVSTGTPAAGDNVTIRFDTNNPGPWFLHCHIDFHLEGGFAV 465
>pdb|1KYA|A Chain A, Active Laccase From Trametes Versicolor Complexed With
2,5-Xylidine
pdb|1KYA|B Chain B, Active Laccase From Trametes Versicolor Complexed With
2,5-Xylidine
pdb|1KYA|C Chain C, Active Laccase From Trametes Versicolor Complexed With
2,5-Xylidine
pdb|1KYA|D Chain D, Active Laccase From Trametes Versicolor Complexed With
2,5-Xylidine
Length = 499
Score = 103 bits (257), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 69/228 (30%), Positives = 110/228 (48%), Gaps = 13/228 (5%)
Query: 1 HGVRQLRSGWADGPAYITQCPIQTGQSYVYNFTVTGQRGTLFWHAHISWLRAT-LYGPIV 59
HG Q + WADGPA+I QCPI +G S++Y+F V Q GT ++H+H+S L GP V
Sbjct: 66 HGFFQKGTNWADGPAFINQCPISSGHSFLYDFQVPDQAGTFWYHSHLSTQYCDGLRGPFV 125
Query: 60 IL-PKRHASYPFPQPFKEVPMIFGEWWKADTEKIINQALQTGAAPNISDAFTINGLPGPL 118
+ P A+ + + + +W+ + + A GA DA ING G
Sbjct: 126 VYDPNDPAADLYDVDNDDTVITLVDWYHVAAK--LGPAFPLGA-----DATLING-KGRS 177
Query: 119 YNCSAKDTFKLKVKPGKTYLLRMINAALNDELFFSIANHTLTVVETDAVYVKPIKTKVVL 178
+ + D + V PGK Y R+++ + + FSI H +T++ETD++ P+ +
Sbjct: 178 PSTTTADLSVISVTPGKRYRFRLVSLSCDPNYTFSIDGHNMTIIETDSINTAPLVVDSIQ 237
Query: 179 ITPGQTTNVLLKAKHKSPNASFLIAARPYATGPASFDNTTTAGVLEYE 226
I Q + +L+A N + I A P G F + +L Y+
Sbjct: 238 IFAAQRYSFVLEANQAVDN--YWIRANP-NFGNVGFTGGINSAILRYD 282
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 47/103 (45%), Gaps = 11/103 (10%)
Query: 366 ALPFNASVEVVMQDTSIIGAESHPLHLHXXXXXXXXXXXXXXDPSKDPAKFNLVDPAERN 425
+LP NA +E+ T+ HP HLH S +N +P R+
Sbjct: 373 SLPSNADIEISFPATAAAPGAPHPFHLHGHAFAVVR--------SAGSTVYNYDNPIFRD 424
Query: 426 TV--GVPSGGW-VAIRFLADNPGAWFMHCHLEVHTSWGLKMAW 465
V G P+ G V IRF DNPG WF+HCH++ H G + +
Sbjct: 425 VVSTGTPAAGDNVTIRFRTDNPGPWFLHCHIDFHLEAGFAVVF 467
>pdb|1ZPU|A Chain A, Crystal Structure Of Fet3p, A Multicopper Oxidase That
Functions In Iron Import
pdb|1ZPU|B Chain B, Crystal Structure Of Fet3p, A Multicopper Oxidase That
Functions In Iron Import
pdb|1ZPU|C Chain C, Crystal Structure Of Fet3p, A Multicopper Oxidase That
Functions In Iron Import
pdb|1ZPU|D Chain D, Crystal Structure Of Fet3p, A Multicopper Oxidase That
Functions In Iron Import
pdb|1ZPU|E Chain E, Crystal Structure Of Fet3p, A Multicopper Oxidase That
Functions In Iron Import
pdb|1ZPU|F Chain F, Crystal Structure Of Fet3p, A Multicopper Oxidase That
Functions In Iron Import
Length = 534
Score = 103 bits (257), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 121/486 (24%), Positives = 191/486 (39%), Gaps = 109/486 (22%)
Query: 1 HGVRQLRSGWADGPAYITQCPIQTGQSYVYNFTVTGQRGTLFWHAHIS-WLRATLYGPIV 59
HG+ Q + DG ++TQCPI G + +YNFTV GT ++H+H + G +
Sbjct: 62 HGLFQNGTASMDGVPFLTQCPIAPGSTMLYNFTVDYNVGTYWYHSHTDGQYEDGMKGLFI 121
Query: 60 ILPKRHASYPFPQPFKEVPMIFGEWWKADTEKIINQALQ----TGAAPNISDAFTINGLP 115
I + S+P+ +E+ + EW+ + + TGA P +P
Sbjct: 122 I---KDDSFPYDYD-EELSLSLSEWYHDLVTDLTKSFMSVYNPTGAEP----------IP 167
Query: 116 GPLYNCSAKDTFKL--KVKPGKTYLLRMINAALNDELFFSIANHTLTVVETDAVYVKPIK 173
N +T L +V+P TYLLR++N +F I +H +TVVE D + +
Sbjct: 168 Q---NLIVNNTMNLTWEVQPDTTYLLRIVNVGGFVSQYFWIEDHEMTVVEIDGITTEKNV 224
Query: 174 TKVVLITPGQTTNVLLKAKHKSPNASFLIAARPYATGPASFDNTTTAGVLEYEQXXXXXX 233
T ++ IT Q VL+ K+ + + +F I + FD+T + Q
Sbjct: 225 TDMLYITVAQRYTVLVHTKNDT-DKNFAIMQK--------FDDTMLDVIPSDLQ------ 269
Query: 234 XXXXXXXXXXXXXFNDTNFAMQFSKKIRSLATAKFPAKVPRKVDRLFFFTVGLGLSPCPQ 293
N T++ M ++K TA P + VD + F L P +
Sbjct: 270 -------------LNATSY-MVYNK------TAALPTQ--NYVDSIDNFLDDFYLQPYEK 307
Query: 294 NQTCQGPNNTMLA-------------ASINNVSFAQPNIALLQAHFFNKSKGVYTTDFPA 340
P++ + A NN+++ P + L V ++ A
Sbjct: 308 EAIYGEPDHVITVDVVMDNLKNGVNYAFFNNITYTAPKVPTLMT--------VLSSGDQA 359
Query: 341 NPPFKFNYTGTPPSNIMVSSGTRAVALPFNASVEVVM--QDTSIIGAESHPLHLHXXXXX 398
N ++ + S T L + VE+V+ QDT +HP HLH
Sbjct: 360 N------------NSEIYGSNTHTFILEKDEIVEIVLNNQDTG-----THPFHLHGHAFQ 402
Query: 399 XXXXXXXXXDPSKD-PAKFNLVD-------PAERNTVGVPSGGWVAIRFLADNPGAWFMH 450
D + P F+ + P R+T+ V IRF ADNPG WF H
Sbjct: 403 TIQRDRTYDDALGEVPHSFDPDNHPAFPEYPMRRDTLYVRPQSNFVIRFKADNPGVWFFH 462
Query: 451 CHLEVH 456
CH+E H
Sbjct: 463 CHIEWH 468
>pdb|3SQR|A Chain A, Crystal Structure Of Laccase From Botrytis Aclada At 1.67
A Resolution
Length = 580
Score = 102 bits (254), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 75/237 (31%), Positives = 114/237 (48%), Gaps = 21/237 (8%)
Query: 1 HGVRQLRSGWADGPAYITQCPIQTGQSYVYNFTVTGQRGTLFWHAHISWLRAT-LYGPIV 59
HG+RQL S DG +TQCPI G + Y F VT Q GT ++H+H S L+GP++
Sbjct: 126 HGIRQLGSLEYDGVPGVTQCPIAPGDTLTYKFQVT-QYGTTWYHSHFSLQYGDGLFGPLI 184
Query: 60 ILPKRHASYPFPQPFKEVPMIFGEWWKADTEKIINQALQTGAAPNISDAFTINGLPGPLY 119
I A Y ++V +IF + W ++ I + GA P + + +NG +
Sbjct: 185 INGPATADYD-----EDVGVIFLQDWAHESVFEIWDTARLGAPPALENTL-MNGTN--TF 236
Query: 120 NCSAK---------DTFKLKVKPGKTYLLRMINAALNDELFFSIANHTLTVVETDAVYVK 170
+CSA F+L G Y LR+IN ++ F+I NHTLTV+ D V +
Sbjct: 237 DCSASTDPNCVGGGKKFELTFVEGTKYRLRLINVGIDSHFEFAIDNHTLTVIANDLVPIV 296
Query: 171 PIKTKVVLITPGQTTNVLLKAKHKSPNASFLIAARPYATGPASFDNTTTAGVLEYEQ 227
P T +LI GQ +V+++A + N + I T + + G+L Y+
Sbjct: 297 PYTTDTLLIGIGQRYDVIVEANAAADN--YWIRGNWGTTCSTNNEAANATGILRYDS 351
Score = 76.3 bits (186), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 36/94 (38%), Positives = 52/94 (55%), Gaps = 1/94 (1%)
Query: 373 VEVVMQDTSIIGAESHPLHLHXXXXXXXXXXXXXXDPSKDPAKFNLVDPAERNTVGVPSG 432
V V++D + G HP+HLH + + PAKFNLV+P R+ +P
Sbjct: 449 VVYVIEDLTGFGIW-HPIHLHGHDFFIVAQETDVFNSDESPAKFNLVNPPRRDVAALPGN 507
Query: 433 GWVAIRFLADNPGAWFMHCHLEVHTSWGLKMAWI 466
G++AI F DNPG+W +HCH+ H S GL M ++
Sbjct: 508 GYLAIAFKLDNPGSWLLHCHIAWHASEGLAMQFV 541
>pdb|3V9E|A Chain A, Structure Of The L513m Mutant Of The Laccase From B.aclada
Length = 580
Score = 102 bits (254), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 75/237 (31%), Positives = 114/237 (48%), Gaps = 21/237 (8%)
Query: 1 HGVRQLRSGWADGPAYITQCPIQTGQSYVYNFTVTGQRGTLFWHAHISWLRAT-LYGPIV 59
HG+RQL S DG +TQCPI G + Y F VT Q GT ++H+H S L+GP++
Sbjct: 126 HGIRQLGSLEYDGVPGVTQCPIAPGDTLTYKFQVT-QYGTTWYHSHFSLQYGDGLFGPLI 184
Query: 60 ILPKRHASYPFPQPFKEVPMIFGEWWKADTEKIINQALQTGAAPNISDAFTINGLPGPLY 119
I A Y ++V +IF + W ++ I + GA P + + +NG +
Sbjct: 185 INGPATADYD-----EDVGVIFLQDWAHESVFEIWDTARLGAPPALENTL-MNGTN--TF 236
Query: 120 NCSAK---------DTFKLKVKPGKTYLLRMINAALNDELFFSIANHTLTVVETDAVYVK 170
+CSA F+L G Y LR+IN ++ F+I NHTLTV+ D V +
Sbjct: 237 DCSASTDPNCVGGGKKFELTFVEGTKYRLRLINVGIDSHFEFAIDNHTLTVIANDLVPIV 296
Query: 171 PIKTKVVLITPGQTTNVLLKAKHKSPNASFLIAARPYATGPASFDNTTTAGVLEYEQ 227
P T +LI GQ +V+++A + N + I T + + G+L Y+
Sbjct: 297 PYTTDTLLIGIGQRYDVIVEANAAADN--YWIRGNWGTTCSTNNEAANATGILRYDS 351
Score = 75.5 bits (184), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 52/94 (55%), Gaps = 1/94 (1%)
Query: 373 VEVVMQDTSIIGAESHPLHLHXXXXXXXXXXXXXXDPSKDPAKFNLVDPAERNTVGVPSG 432
V V++D + G HP+HLH + + PAKFNLV+P R+ +P
Sbjct: 449 VVYVIEDLTGFGIW-HPIHLHGHDFFIVAQETDVFNSDESPAKFNLVNPPRRDVAALPGN 507
Query: 433 GWVAIRFLADNPGAWFMHCHLEVHTSWGLKMAWI 466
G++AI F DNPG+W +HCH+ H S G+ M ++
Sbjct: 508 GYLAIAFKLDNPGSWLLHCHIAWHASEGMAMQFV 541
>pdb|3KW7|A Chain A, Crystal Structure Of Lacb From Trametes Sp. Ah28-2
pdb|3KW7|B Chain B, Crystal Structure Of Lacb From Trametes Sp. Ah28-2
Length = 502
Score = 100 bits (248), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 61/200 (30%), Positives = 100/200 (50%), Gaps = 12/200 (6%)
Query: 1 HGVRQLRSGWADGPAYITQCPIQTGQSYVYNFTVTGQRGTLFWHAHISWLRAT-LYGPIV 59
HG+ Q + WADGPA++ QCPI +G S++Y+FTV Q GT ++H+H+S L GP+V
Sbjct: 66 HGLFQHGTNWADGPAFVNQCPIASGNSFLYDFTVPDQAGTFWYHSHLSTQYCDGLRGPLV 125
Query: 60 IL-PKRHASYPFPQPFKEVPMIFGEWWKADTEKIINQALQTGAA-PNISDAFTINGLPGP 117
+ P + + + +W+ A + G A P +D+ INGL G
Sbjct: 126 VYDPSDPYASMYDVDDDTTVITLSDWYHT--------AAKLGPAFPPNADSVLINGL-GR 176
Query: 118 LYNCSAKDTFKLKVKPGKTYLLRMINAALNDELFFSIANHTLTVVETDAVYVKPIKTKVV 177
+A D + V+ K Y R+++ + + FSI H +T++E D V +P++ +
Sbjct: 177 FAGGNASDLAVITVEQNKRYRFRLVSLSCDPNFTFSIDGHNMTIIEVDGVNHEPLEVDSI 236
Query: 178 LITPGQTTNVLLKAKHKSPN 197
I Q + +L A N
Sbjct: 237 QIFASQRYSFVLNATQSVDN 256
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 50/105 (47%), Gaps = 14/105 (13%)
Query: 367 LPFNASVEVVMQDTSIIGAES-----HPLHLHXXXXXXXXXXXXXXDPSKDPAKFNLVDP 421
LP N+++E+ T++ G + HP HLH S + +N V+P
Sbjct: 374 LPLNSTIELSFPITTVNGVTNAPGAPHPFHLHGHAFSVVR--------SAGSSDYNYVNP 425
Query: 422 AERNTVGVPS-GGWVAIRFLADNPGAWFMHCHLEVHTSWGLKMAW 465
R+TV + G V IRF DN G WF+HCH++ H G + +
Sbjct: 426 VRRDTVSTGNPGDNVTIRFTTDNAGPWFLHCHIDFHLEAGFAIVF 470
>pdb|3DIV|A Chain A, Crystal Structure Of Laccase From Cerrena Maxima At 1.76a
Resolution
Length = 499
Score = 95.9 bits (237), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 69/229 (30%), Positives = 107/229 (46%), Gaps = 15/229 (6%)
Query: 1 HGVRQLRSGWADGPAYITQCPIQTGQSYVYNFTVTGQRGTLFWHAHISWLRAT-LYGPIV 59
HG Q + WADGPA+I QCPI G S++Y+F V Q GT ++H+H+S L GP V
Sbjct: 66 HGFFQQGTNWADGPAFINQCPISPGHSFLYDFQVPNQAGTFWYHSHLSTQYCDGLRGPFV 125
Query: 60 ILPKR--HASYPFPQPFKEVPMIFGEWWKADTEKIINQALQTGAAPNISDAFTINGLPGP 117
+ HAS + + + +W+ T + GA DA ING
Sbjct: 126 VYDPNDPHASR-YDVDNDDTVITLADWYH--TAAKLGPRFPAGA-----DATLINGKGRA 177
Query: 118 LYNCSAKDTFKLKVKPGKTYLLRMINAALNDELFFSIANHTLTVVETDAVYVKPIKTKVV 177
+ SA+ + +KV GK R+++ + + FSI H LT++E D+ +P+ +
Sbjct: 178 PSDTSAELSV-IKVTKGKRXRFRLVSLSCDPNFTFSIDGHNLTIIEVDSSNSQPLSVDSI 236
Query: 178 LITPGQTTNVLLKAKHKSPNASFLIAARPYATGPASFDNTTTAGVLEYE 226
I Q + +L A N + I A P G F+ + +L Y+
Sbjct: 237 QIFAAQRYSFVLNANQAVDN--YWIRANP-NFGNVGFNGGINSAILRYD 282
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 56/118 (47%), Gaps = 12/118 (10%)
Query: 349 TGTPPSNIMVSSGTRAVALPFNASVEVVMQDTSIIGAESHPLHLHXXXXXXXXXXXXXXD 408
+G + ++ SG+ V LP NAS+E+ T+ HP HLH
Sbjct: 357 SGAQTAQDLLPSGSVXV-LPSNASIEISFPATAAAPGAPHPFHLHGHTFAVVR------- 408
Query: 409 PSKDPAKFNLVDPAERNTV--GVPSGGW-VAIRFLADNPGAWFMHCHLEVHTSWGLKM 463
S +N +P R+ V G P+ G V IRFL +NPG WF+HCH++ H G +
Sbjct: 409 -SAGSTVYNYSNPIFRDVVSTGTPAAGDNVTIRFLTNNPGPWFLHCHIDFHLEGGFAV 465
>pdb|2HZH|A Chain A, Crystal Structure Of Laccase From Coriolus Zonatus At 2.6
A Resolution
Length = 499
Score = 94.4 bits (233), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 69/234 (29%), Positives = 110/234 (47%), Gaps = 25/234 (10%)
Query: 1 HGVRQLRSGWADGPAYITQCPIQTGQSYVYNFTVTGQRGTLFWHAHISWLRATLY----- 55
HG Q + WADGPA++ QCPI G S++Y+F+ Q GT ++H+H+S T Y
Sbjct: 66 HGFFQKGTNWADGPAFVNQCPIAAGSSFLYDFSTPIQAGTFWYHSHLS----TQYCDGDR 121
Query: 56 GPIVIL-PKRHASYPFPQPFKEVPMIFGEWWKADTEKIINQALQTG-AAPNISDAFTING 113
GP V+ P ++ + + +W+ A Q G A P +DA ING
Sbjct: 122 GPFVVYDPNDPSANLYDVDNLNTVITLTDWYHT--------AAQNGPAKPGGADATLING 173
Query: 114 LP-GPLYNCSAKDTFKLKVKPGKTYLLRMINAALNDELFFSIANHTLTVVETDAVYVKPI 172
GP + + D + V GK Y R+++ + + FSI H +T+++ D++ V+P+
Sbjct: 174 QGRGP--SSPSADLAVISVTAGKRYRFRLVSNSCDPNYTFSIDGHQMTIIQVDSINVQPL 231
Query: 173 KTKVVLITPGQTTNVLLKAKHKSPNASFLIAARPYATGPASFDNTTTAGVLEYE 226
+ I Q + +L A N + I A P G F N + +L Y
Sbjct: 232 VVLKIQIYAAQRYSFILNANQAVNN--YWIRANP-NQGNVGFTNGINSAILRYS 282
Score = 59.3 bits (142), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 47/154 (30%), Positives = 69/154 (44%), Gaps = 15/154 (9%)
Query: 318 NIALLQAHFFNKSKG-VYTTDF--PANPPFKFNYTGTPPSNIMVSSGTRAVALPFNASVE 374
N+A+ QA FN + V F P P +G + +++SG +LP +A++E
Sbjct: 323 NLAINQAFNFNGTNHFVDGASFVPPTVPVLSQIVSGAQSAADLLASGL-VYSLPSDANIE 381
Query: 375 VVMQDTSIIGAESHPLHLHXXXXXXXXXXXXXXDPSKDPAKFNLVDPAERNTV--GVPSG 432
+ TS HP HLH S +N DP R+TV G P+
Sbjct: 382 ISFPATSAAAGGPHPFHLHGHAFAVVR--------SAGSTTYNYNDPIFRDTVSTGTPAA 433
Query: 433 GW-VAIRFLADNPGAWFMHCHLEVHTSWGLKMAW 465
V IRF +NPG WF+HCH++ H G + +
Sbjct: 434 NDNVTIRFKTNNPGPWFLHCHIDFHLEAGFAVVF 467
>pdb|1HFU|A Chain A, Type-2 Cu-Depleted Laccase From Coprinus Cinereus At 1.68
A Resolution
Length = 503
Score = 89.4 bits (220), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 67/231 (29%), Positives = 106/231 (45%), Gaps = 18/231 (7%)
Query: 1 HGVRQLRSGWADGPAYITQCPIQTGQSYVYNFTVTGQRGTLFWHAHISWLRAT-LYGPIV 59
HG+ Q + WADG + QCPI G +++Y FT G GT ++H+H L GP+V
Sbjct: 66 HGLFQRGTNWADGADGVNQCPISPGHAFLYKFTPAGHAGTFWYHSHFGTQYCDGLRGPMV 125
Query: 60 ILPKR--HASYPFPQPFKEVPMIFGEWWKADTEKIINQALQTGAAPNISDAFTINGLPGP 117
I HA+ + + + + +W+ I ++Q A P DA ING G
Sbjct: 126 IYDDNDPHAAL-YDEDDENTIITLADWY-----HIPAPSIQGAAQP---DATLING-KGR 175
Query: 118 LYNCSAKDTFKLKVKPGKTYLLRMINAALNDELFFSIANHTLTVVETDAVYVKPIKTKVV 177
A + + V+ GK Y +R+I+ + + FSI H LT++E D +P +
Sbjct: 176 YVGGPAAELSIVNVEQGKKYRMRLISLSCDPNWQFSIDGHELTIIEVDGELTEPHTVDRL 235
Query: 178 LITPGQTTNVLLKAKHKSPNASFLIAARPYATG---PASFDNTTTAGVLEY 225
I GQ + +L A P ++ I A+P +F N + +L Y
Sbjct: 236 QIFTGQRYSFVLDANQ--PVDNYWIRAQPNKGRNGLAGTFANGVNSAILRY 284
Score = 62.4 bits (150), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 63/128 (49%), Gaps = 12/128 (9%)
Query: 339 PANPPFKFNYTGTPPSNIMVSSGTRAVALPFNASVEVVMQDTSIIGAESHPLHLHXXXXX 398
P+ P +G +N ++ +G+ LP N VE+V+ ++G HP HLH
Sbjct: 350 PSVPTLLQIMSGAQSANDLLPAGS-VYELPRNQVVELVVP-AGVLGG-PHPFHLHGHAFS 406
Query: 399 XXXXXXXXXDPSKDPAKFNLVDPAERNTVGVP-SGGWVAIRFLADNPGAWFMHCHLEVHT 457
S + +N V+P +R+ V + +G V IRF+ DNPG WF HCH+E H
Sbjct: 407 VVR--------SAGSSTYNFVNPVKRDVVSLGVTGDEVTIRFVTDNPGPWFFHCHIEFHL 458
Query: 458 SWGLKMAW 465
GL + +
Sbjct: 459 MNGLAIVF 466
>pdb|1A65|A Chain A, Type-2 Cu-depleted Laccase From Coprinus Cinereus
Length = 504
Score = 89.4 bits (220), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 67/231 (29%), Positives = 106/231 (45%), Gaps = 18/231 (7%)
Query: 1 HGVRQLRSGWADGPAYITQCPIQTGQSYVYNFTVTGQRGTLFWHAHISWLRAT-LYGPIV 59
HG+ Q + WADG + QCPI G +++Y FT G GT ++H+H L GP+V
Sbjct: 66 HGLFQRGTNWADGADGVNQCPISPGHAFLYKFTPAGHAGTFWYHSHFGTQYCDGLRGPMV 125
Query: 60 ILPKR--HASYPFPQPFKEVPMIFGEWWKADTEKIINQALQTGAAPNISDAFTINGLPGP 117
I HA+ + + + + +W+ I ++Q A P DA ING G
Sbjct: 126 IYDDNDPHAAL-YDEDDENTIITLADWY-----HIPAPSIQGAAQP---DATLING-KGR 175
Query: 118 LYNCSAKDTFKLKVKPGKTYLLRMINAALNDELFFSIANHTLTVVETDAVYVKPIKTKVV 177
A + + V+ GK Y +R+I+ + + FSI H LT++E D +P +
Sbjct: 176 YVGGPAAELSIVNVEQGKKYRMRLISLSCDPNWQFSIDGHELTIIEVDGELTEPHTVDRL 235
Query: 178 LITPGQTTNVLLKAKHKSPNASFLIAARPYATG---PASFDNTTTAGVLEY 225
I GQ + +L A P ++ I A+P +F N + +L Y
Sbjct: 236 QIFTGQRYSFVLDANQ--PVDNYWIRAQPNKGRNGLAGTFANGVNSAILRY 284
Score = 62.4 bits (150), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 63/128 (49%), Gaps = 12/128 (9%)
Query: 339 PANPPFKFNYTGTPPSNIMVSSGTRAVALPFNASVEVVMQDTSIIGAESHPLHLHXXXXX 398
P+ P +G +N ++ +G+ LP N VE+V+ ++G HP HLH
Sbjct: 350 PSVPTLLQIMSGAQSANDLLPAGS-VYELPRNQVVELVVP-AGVLGG-PHPFHLHGHAFS 406
Query: 399 XXXXXXXXXDPSKDPAKFNLVDPAERNTVGVP-SGGWVAIRFLADNPGAWFMHCHLEVHT 457
S + +N V+P +R+ V + +G V IRF+ DNPG WF HCH+E H
Sbjct: 407 VVR--------SAGSSTYNFVNPVKRDVVSLGVTGDEVTIRFVTDNPGPWFFHCHIEFHL 458
Query: 458 SWGLKMAW 465
GL + +
Sbjct: 459 MNGLAIVF 466
>pdb|3PPS|A Chain A, Crystal Structure Of An Ascomycete Fungal Laccase From
Thielavia Arenaria
pdb|3PPS|B Chain B, Crystal Structure Of An Ascomycete Fungal Laccase From
Thielavia Arenaria
pdb|3PPS|C Chain C, Crystal Structure Of An Ascomycete Fungal Laccase From
Thielavia Arenaria
pdb|3PPS|D Chain D, Crystal Structure Of An Ascomycete Fungal Laccase From
Thielavia Arenaria
Length = 604
Score = 69.7 bits (169), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 63/230 (27%), Positives = 101/230 (43%), Gaps = 16/230 (6%)
Query: 1 HGVRQLRSGWADGPAYITQCPIQ-TGQSYVYNFTVTGQRGTLFWHAHISWLRATLYGPIV 59
HG+RQL + + DG +T+CPI G Y F T Q GT ++H+H S YG V
Sbjct: 136 HGLRQLGNVFNDGANGVTECPIPPKGGRKTYKFRAT-QYGTSWYHSHFS----AQYGNGV 190
Query: 60 ---ILPKRHASYPFPQPFKEVPMIFGEWWKADTEKIINQALQTGAAPNISDAFTINGLPG 116
I AS P+ P++ +++ +++++ GA P SD NG
Sbjct: 191 VGTIQIDGPASLPYDIDLGVFPLM--DYYYRSADELVHFTQSNGAPP--SDNVLFNGT-A 245
Query: 117 PLYNCSAKDTFKLKVKPGKTYLLRMINAALNDELFFSIANHTLTVVETDAVYVKPIKTKV 176
A + + + PGK + LR+IN + ++ S+ H +TV+ TD V V
Sbjct: 246 RHPETGAGQWYNVTLTPGKRHRLRIINTSTDNHFQVSLVGHNMTVIATDMVPVNAFTVSS 305
Query: 177 VLITPGQTTNVLLKAKHKSPNASFLIAARPYATGPASFDNTTTAGVLEYE 226
+ + GQ +V + A N F + G S +N A + Y+
Sbjct: 306 LFLAVGQRYDVTIDANSPVGNYWFNVTFGDGLCG--SSNNKFPAAIFRYQ 353
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 42/88 (47%), Gaps = 9/88 (10%)
Query: 388 HPLHLHXXXXXX---------XXXXXXXXDPSKDPAKFNLVDPAERNTVGVPSGGWVAIR 438
HP+HLH DP+KD + +P R+ +P+GGW+ +
Sbjct: 472 HPMHLHGHDFLVLGRSPDELPSAGVRHIFDPAKDLPRLKGNNPVRRDVTMLPAGGWLLLA 531
Query: 439 FLADNPGAWFMHCHLEVHTSWGLKMAWI 466
F DNPGAW HCH+ H S GL + ++
Sbjct: 532 FKTDNPGAWLFHCHIAWHVSGGLSVDFL 559
>pdb|1GW0|A Chain A, Crystal Structure Of Laccase From Melanocarpus Albomyces
In Four Copper Form
pdb|1GW0|B Chain B, Crystal Structure Of Laccase From Melanocarpus Albomyces
In Four Copper Form
pdb|2IH8|A Chain A, A Low-dose Crystal Structure Of A Recombinant Melanocarpus
Albomyces Laccase
pdb|2IH8|B Chain B, A Low-dose Crystal Structure Of A Recombinant Melanocarpus
Albomyces Laccase
pdb|2IH9|A Chain A, A High-Dose Crystal Structure Of A Recombinant
Melanocarbus Albomyces Laccase
pdb|2IH9|B Chain B, A High-Dose Crystal Structure Of A Recombinant
Melanocarbus Albomyces Laccase
pdb|3FU7|B Chain B, Melanocarpus Albomyces Laccase Crystal Soaked (4 Sec) With
2,6- Dimethoxyphenol
pdb|3FU9|A Chain A, Melanocarpus Albomyces Laccase Crystal Soaked (20 Min)
With 2,6- Dimethoxyphenol
pdb|3FU9|B Chain B, Melanocarpus Albomyces Laccase Crystal Soaked (20 Min)
With 2,6- Dimethoxyphenol
pdb|3QPK|A Chain A, Probing Oxygen Channels In Melanocarpus Albomyces Laccase
pdb|3QPK|B Chain B, Probing Oxygen Channels In Melanocarpus Albomyces Laccase
Length = 559
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 44/88 (50%), Gaps = 9/88 (10%)
Query: 388 HPLHLHXXX---------XXXXXXXXXXXDPSKDPAKFNLVDPAERNTVGVPSGGWVAIR 438
HP+HLH DP+ D A+ N +P R+T +P+GGW+ +
Sbjct: 431 HPMHLHGHDFLVLGRSPDVPAASQQRFVFDPAVDLARLNGDNPPRRDTTMLPAGGWLLLA 490
Query: 439 FLADNPGAWFMHCHLEVHTSWGLKMAWI 466
F DNPGAW HCH+ H S GL + ++
Sbjct: 491 FRTDNPGAWLFHCHIAWHVSGGLSVDFL 518
Score = 61.6 bits (148), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 57/203 (28%), Positives = 85/203 (41%), Gaps = 12/203 (5%)
Query: 1 HGVRQLRSGWADGPAYITQCPIQ-TGQSYVYNFTVTGQRGTLFWHAHISWLRAT-LYGPI 58
HG+ Q + DG +T+CPI G Y + Q GT ++H+H S + G I
Sbjct: 95 HGIHQKDTNLHDGANGVTECPIPPKGGQRTYRWRAR-QYGTSWYHSHFSAQYGNGVVGTI 153
Query: 59 VILPKRHASYPFPQPFKEVPMIFGEWWKADTEKIINQALQTGAAPNISDAFTINGLP-GP 117
I AS P+ P+ + AD Q AP SD ING P
Sbjct: 154 QI--NGPASLPYDIDLGVFPITDYYYRAADDLVHFTQ----NNAPPFSDNVLINGTAVNP 207
Query: 118 LYNCSAKDTFKLKVKPGKTYLLRMINAALNDELFFSIANHTLTVVETDAVYVKPIKTKVV 177
N + + PGK + LR++N + + S+ NHT+TV+ D V V + +
Sbjct: 208 --NTGEGQYANVTLTPGKRHRLRILNTSTENHFQVSLVNHTMTVIAADMVPVNAMTVDSL 265
Query: 178 LITPGQTTNVLLKAKHKSPNASF 200
+ GQ +V++ A N F
Sbjct: 266 FLAVGQRYDVVIDASRAPDNYWF 288
>pdb|3DKH|A Chain A, L559a Mutant Of Melanocarpus Albomyces Laccase
pdb|3DKH|B Chain B, L559a Mutant Of Melanocarpus Albomyces Laccase
Length = 559
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 44/88 (50%), Gaps = 9/88 (10%)
Query: 388 HPLHLHXXX---------XXXXXXXXXXXDPSKDPAKFNLVDPAERNTVGVPSGGWVAIR 438
HP+HLH DP+ D A+ N +P R+T +P+GGW+ +
Sbjct: 431 HPMHLHGHDFLVLGRSPDVPAASQQRFVFDPAVDLARLNGDNPPRRDTTMLPAGGWLLLA 490
Query: 439 FLADNPGAWFMHCHLEVHTSWGLKMAWI 466
F DNPGAW HCH+ H S GL + ++
Sbjct: 491 FRTDNPGAWLFHCHIAWHVSGGLSVDFL 518
Score = 61.6 bits (148), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 57/203 (28%), Positives = 85/203 (41%), Gaps = 12/203 (5%)
Query: 1 HGVRQLRSGWADGPAYITQCPIQ-TGQSYVYNFTVTGQRGTLFWHAHISWLRAT-LYGPI 58
HG+ Q + DG +T+CPI G Y + Q GT ++H+H S + G I
Sbjct: 95 HGIHQKDTNLHDGANGVTECPIPPKGGQRTYRWRAR-QYGTSWYHSHFSAQYGNGVVGTI 153
Query: 59 VILPKRHASYPFPQPFKEVPMIFGEWWKADTEKIINQALQTGAAPNISDAFTINGLP-GP 117
I AS P+ P+ + AD Q AP SD ING P
Sbjct: 154 QI--NGPASLPYDIDLGVFPITDYYYRAADDLVHFTQ----NNAPPFSDNVLINGTAVNP 207
Query: 118 LYNCSAKDTFKLKVKPGKTYLLRMINAALNDELFFSIANHTLTVVETDAVYVKPIKTKVV 177
N + + PGK + LR++N + + S+ NHT+TV+ D V V + +
Sbjct: 208 --NTGEGQYANVTLTPGKRHRLRILNTSTENHFQVSLVNHTMTVIAADMVPVNAMTVDSL 265
Query: 178 LITPGQTTNVLLKAKHKSPNASF 200
+ GQ +V++ A N F
Sbjct: 266 FLAVGQRYDVVIDASRAPDNYWF 288
>pdb|2Q9O|A Chain A, Near-Atomic Resolution Structure Of A Melanocarpus
Albomyces Laccase
pdb|2Q9O|B Chain B, Near-Atomic Resolution Structure Of A Melanocarpus
Albomyces Laccase
pdb|3FU7|A Chain A, Melanocarpus Albomyces Laccase Crystal Soaked (4 Sec) With
2,6- Dimethoxyphenol
pdb|3FU8|A Chain A, Melanocarpus Albomyces Laccase Crystal Soaked (10 Sec)
With 2,6- Dimethoxyphenol
pdb|3FU8|B Chain B, Melanocarpus Albomyces Laccase Crystal Soaked (10 Sec)
With 2,6- Dimethoxyphenol
Length = 559
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 44/88 (50%), Gaps = 9/88 (10%)
Query: 388 HPLHLHXXX---------XXXXXXXXXXXDPSKDPAKFNLVDPAERNTVGVPSGGWVAIR 438
HP+HLH DP+ D A+ N +P R+T +P+GGW+ +
Sbjct: 431 HPMHLHGHDFLVLGRSPDVPAASQQRFVFDPAVDLARLNGDNPPRRDTTMLPAGGWLLLA 490
Query: 439 FLADNPGAWFMHCHLEVHTSWGLKMAWI 466
F DNPGAW HCH+ H S GL + ++
Sbjct: 491 FRTDNPGAWLFHCHIAWHVSGGLSVDFL 518
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 57/203 (28%), Positives = 85/203 (41%), Gaps = 12/203 (5%)
Query: 1 HGVRQLRSGWADGPAYITQCPIQ-TGQSYVYNFTVTGQRGTLFWHAHISWLRAT-LYGPI 58
HG+ Q + DG +T+CPI G Y + Q GT ++H+H S + G I
Sbjct: 95 HGIXQKDTNLHDGANGVTECPIPPKGGQRTYRWRAR-QYGTSWYHSHFSAQYGNGVVGTI 153
Query: 59 VILPKRHASYPFPQPFKEVPMIFGEWWKADTEKIINQALQTGAAPNISDAFTINGLP-GP 117
I AS P+ P+ + AD Q AP SD ING P
Sbjct: 154 QI--NGPASLPYDIDLGVFPITDYYYRAADDLVHFTQ----NNAPPFSDNVLINGTAVNP 207
Query: 118 LYNCSAKDTFKLKVKPGKTYLLRMINAALNDELFFSIANHTLTVVETDAVYVKPIKTKVV 177
N + + PGK + LR++N + + S+ NHT+TV+ D V V + +
Sbjct: 208 --NTGEGQYANVTLTPGKRHRLRILNTSTENHFQVSLVNHTMTVIAADMVPVNAMTVDSL 265
Query: 178 LITPGQTTNVLLKAKHKSPNASF 200
+ GQ +V++ A N F
Sbjct: 266 FLAVGQRYDVVIDASRAPDNYWF 288
>pdb|3G5W|A Chain A, Crystal Structure Of Blue Copper Oxidase From Nitrosomonas
Europaea
pdb|3G5W|B Chain B, Crystal Structure Of Blue Copper Oxidase From Nitrosomonas
Europaea
pdb|3G5W|C Chain C, Crystal Structure Of Blue Copper Oxidase From Nitrosomonas
Europaea
pdb|3G5W|D Chain D, Crystal Structure Of Blue Copper Oxidase From Nitrosomonas
Europaea
pdb|3G5W|E Chain E, Crystal Structure Of Blue Copper Oxidase From Nitrosomonas
Europaea
pdb|3G5W|F Chain F, Crystal Structure Of Blue Copper Oxidase From Nitrosomonas
Europaea
Length = 318
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/197 (25%), Positives = 89/197 (45%), Gaps = 25/197 (12%)
Query: 1 HGVRQLRSGWADGPAYITQCPIQTGQSYVYNFTVTGQRGTLFWHAHIS-----WLRATLY 55
HG+ Q + +DG + TQ I+ G ++ Y F GT+++H H++ +R ++
Sbjct: 61 HGMLQRGTWQSDGVPHATQHAIEPGDTFTYKFKAE-PAGTMWYHCHVNVNEHVTMRG-MW 118
Query: 56 GPIVILPKRHASYPFPQP---FKEVPMIFGEWWKADTEKIINQALQTGAAPNISDAFTIN 112
GP+++ PK P P K+ ++ +W N+ + G ++ D +TIN
Sbjct: 119 GPLIVEPKN----PLPIEKTVTKDYILMLSDW----VSSWANKPGEGGIPGDVFDYYTIN 170
Query: 113 GLPGPLYNCSAKDTFKLKVKPGKTYLLRMINAALNDELFFSIANHTLTVVETDAVYVKPI 172
P +T ++VK G LR+I A + + + + + KPI
Sbjct: 171 AKSFP-------ETQPIRVKKGDVIRLRLIGAGDHVHAIHTHGHISQIAFKDGFPLDKPI 223
Query: 173 KTKVVLITPGQTTNVLL 189
K VLI PG+ +V+L
Sbjct: 224 KGDTVLIGPGERYDVIL 240
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 25/47 (53%)
Query: 416 FNLVDPAERNTVGVPSGGWVAIRFLADNPGAWFMHCHLEVHTSWGLK 462
F L P + +TV + G + DNPG W +H H++ HT+ G K
Sbjct: 217 FPLDKPIKGDTVLIGPGERYDVILNMDNPGLWMIHDHVDTHTTNGDK 263
>pdb|2XU9|A Chain A, Crystal Structure Of Laccase From Thermus Thermophilus
Hb27
pdb|2XUW|A Chain A, Crystal Structure Of Apolaccase From Thermus Thermophilus
Hb27
pdb|2XVB|A Chain A, Crystal Structure Of Laccase From Thermus Thermophilus
Hb27 Complexed With Hg, Crystal Of The Apoenzyme Soaked
For 5 Min. In 5 Mm Hgcl2 At 278 K.
pdb|4AI7|A Chain A, Crystal Structure Of Laccase From Thermus Thermophilus
Hb27 Complexed With Hg, Crystal Of The Apoenzyme Soaked
For 2 H In 5 Mm Hgcl2 At 278 K.
pdb|2YAE|A Chain A, X-Ray Induced Reduction Of Laccase From Thermus
Thermophilus Hb27(0.0-12.5 Percent Dose)
pdb|2YAF|A Chain A, X-Ray Induced Reduction Of Laccase From Thermus
Thermophilus Hb27 (12.5-25.0 Percent Dose)
pdb|2YAH|A Chain A, X-Ray Induced Reduction Of Laccase From Thermus
Thermophilus Hb27 (25.0-37.5 Percent Dose)
pdb|2YAM|A Chain A, X-Ray Induced Reduction Of Laccase From Thermus
Thermophilus Hb27 (37.5-50.0 Percent Dose)
pdb|2YAO|A Chain A, X-Ray Induced Reduction Of Laccase From Thermus
Thermophilus Hb27 (50.0-62.5 Percent Dose)
pdb|2YAP|A Chain A, X-Ray Induced Reduction Of Laccase From Thermus
Thermophilus Hb27 (62.5-75.0 Percent Dose)
pdb|2YAQ|A Chain A, X-Ray Induced Reduction Of Laccase From Thermus
Thermophilus Hb27 (75.0-87.5 Percent Dose)
pdb|2YAR|A Chain A, X-Ray Induced Reduction Of Laccase From Thermus
Thermophilus Hb27 (87.5-100.0 Percent Dose)
Length = 439
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 49/197 (24%), Positives = 86/197 (43%), Gaps = 31/197 (15%)
Query: 22 IQTGQSYVYNFTVTGQRGTLFW-HAHIS-----WLRATLYGPIVILPKRHASYPFPQPFK 75
I G+S+ Y FTV + FW H H+ L A L G +V+
Sbjct: 89 IPPGESWTYEFTVPKELAGTFWYHPHLHGRVAPQLFAGLLGALVV----------ESSLD 138
Query: 76 EVPMIFGEWWKADTEKII--NQALQTGAAPNISDAFTINGLPGP--LYNCSAKDTFKLKV 131
+P E +A+ ++ + ALQ G + +NG G L N + + T V
Sbjct: 139 AIP----ELREAEEHLLVLKDLALQGGRPAPHTPMDWMNGKEGDLVLVNGALRPTL---V 191
Query: 132 KPGKTYLLRMINAALNDELFFSIANHTLTVVETDAVYV-KPIKTKVVLITPGQTTNVLLK 190
T LR++NA+ ++ +H L ++ D ++ +P++ +L+ PG+ VL++
Sbjct: 192 AQKATLRLRLLNASNARYYRLALQDHPLYLIAADGGFLEEPLEVSELLLAPGERAEVLVR 251
Query: 191 AKHKSPNASFLIAARPY 207
+ + FL+ A PY
Sbjct: 252 LRKE---GRFLLQALPY 265
>pdb|3AW5|A Chain A, Structure Of A Multicopper Oxidase From The
Hyperthermophilic Archaeon Pyrobaculum Aerophilum
Length = 448
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 37/179 (20%), Positives = 71/179 (39%), Gaps = 21/179 (11%)
Query: 22 IQTGQSYVYNFTVTGQRGTLFWHAHISWLRATLYG----PIVILPKRHASYPFPQPFKEV 77
I G+SY Y+F V + GT +H H L A + +VI+ + F ++
Sbjct: 81 ITPGESYNYSFDVVNRAGTYLYHPHPHGLTAKQFYMGQLGLVIVEDSGSDLGFKYGVNDL 140
Query: 78 PMIFGEWWKADTEKIINQALQTGAAPNISDAFTINGLPGPLYNCSAKDTFKLKVKPGKTY 137
P++ + + N A + +A +NG+ ++ S G +Y
Sbjct: 141 PLVISDRRFIGGAPVYNPTPMEMIAGFLGNAVLVNGVKDAVFKLS-----------GGSY 189
Query: 138 LLRMINAALNDELFFSIANHTLTVVETDAVYV------KPIKTKVVLITPGQTTNVLLK 190
LR++N + SI VV + V +PI+ + + + P + V+++
Sbjct: 190 RLRLVNGSNARLYMLSIVKKNGDVVPMRLIAVDQGFLARPIEVRALFLAPAERAEVVVE 248
>pdb|3ZX1|A Chain A, Multicopper Oxidase From Campylobacter Jejuni: A
Metallo-Oxidase
Length = 481
Score = 32.3 bits (72), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 41/178 (23%), Positives = 65/178 (36%), Gaps = 23/178 (12%)
Query: 21 PIQTGQSYVYNFTV-TGQRGTLFWHAHISWLRAT-----LYGPIVILPKRHASYPFPQPF 74
PI G+ +Y F + GT ++H H + + L G VI K+ A
Sbjct: 124 PILAGEERIYRFEIPQDSAGTYWYHPHPHYTASKQVFMGLAGAFVIKAKKDAL----SHL 179
Query: 75 KEVPMIFGEWWKADTEKIINQALQTGAAPNISDAFTINGLPGPLYNCSAKDTFKLKVKPG 134
KE ++ + + +I N L + ING FK K+K
Sbjct: 180 KEKDLMISDLRLDENAQIPNNNLNDWLNGREGEFVLING------------QFKPKIKLA 227
Query: 135 KTYLLRMINAALNDELFFSIANHTLTVVETDAVYV-KPIKTKVVLITPGQTTNVLLKA 191
+R+ NA L I +V TD + K I + + ++P VL+ A
Sbjct: 228 TNERIRIYNATAARYLNLRIQGAKFILVGTDGGLIEKTIYKEELFLSPASRVEVLIDA 285
>pdb|3GDC|A Chain A, Crystal Structure Of Multicopper Oxidase
pdb|3GDC|B Chain B, Crystal Structure Of Multicopper Oxidase
pdb|3GDC|C Chain C, Crystal Structure Of Multicopper Oxidase
Length = 288
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 38/152 (25%), Positives = 58/152 (38%), Gaps = 32/152 (21%)
Query: 1 HGVRQLRSGWADGPAYITQCPIQTGQSYVYNFTVTGQRGTLFWHAHIS----WLRATLYG 56
HGV + DG I I GQS+ Y F T GT +H H S + LYG
Sbjct: 93 HGVHRAT---MDGTPGIGAGSIAPGQSFTYEFDAT-PFGTHLYHCHQSPLAPHIAKGLYG 148
Query: 57 PIVILPKRHASYPFPQPFKEVPMIFGEWWKADTEKIINQALQTGAAPNISDAFTINGLPG 116
++ PK +P AD E ++ + ++ +++NGLP
Sbjct: 149 GFIVEPKE------GRP------------PADDEMVMVMNGYNTDGGDDNEFYSVNGLPF 190
Query: 117 PLYNCSAKDTFKLKVKPGKTYLLRMINAALND 148
+ F +KVK + + +IN D
Sbjct: 191 HFMD------FPVKVKQHELVRIHLINVLEYD 216
>pdb|1KCW|A Chain A, X-Ray Crystal Structure Of Human Ceruloplasmin At 3.0
Angstroms
Length = 1046
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 10/36 (27%), Positives = 17/36 (47%)
Query: 432 GGWVAIRFLADNPGAWFMHCHLEVHTSWGLKMAWIV 467
G + + PG W +HCH+ H G++ + V
Sbjct: 1002 GTYQTLEMFPRTPGIWLLHCHVTDHIHAGMETTYTV 1037
>pdb|2J5W|A Chain A, Ceruloplasmin Revisited: Structural And Functional Roles Of
Various Metal Cation Binding Sites
Length = 1065
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 10/36 (27%), Positives = 17/36 (47%)
Query: 432 GGWVAIRFLADNPGAWFMHCHLEVHTSWGLKMAWIV 467
G + + PG W +HCH+ H G++ + V
Sbjct: 1021 GTYQTLEMFPRTPGIWLLHCHVTDHIHAGMETTYTV 1056
>pdb|3CG8|A Chain A, Laccase From Streptomyces Coelicolor
pdb|3CG8|B Chain B, Laccase From Streptomyces Coelicolor
pdb|3CG8|C Chain C, Laccase From Streptomyces Coelicolor
Length = 343
Score = 28.5 bits (62), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 445 GAWFMHCHLEVHTSWGLKMAWIV 467
GAW HCH++ H+ G+ ++V
Sbjct: 282 GAWMYHCHVQSHSDMGMVGLFLV 304
>pdb|3T9W|A Chain A, Small Laccase From Amycolatopsis Sp. Atcc 39116
pdb|3TA4|F Chain F, Small Laccase From Amycolatopsis Sp. Atcc 39116 Complexed
With 1-(3,4-
Dimethoxyphenyl)-2-(2-Methoxyphenoxy)-1,
3-Dihydroxypropane
pdb|3TA4|D Chain D, Small Laccase From Amycolatopsis Sp. Atcc 39116 Complexed
With 1-(3,4-
Dimethoxyphenyl)-2-(2-Methoxyphenoxy)-1,
3-Dihydroxypropane
pdb|3TA4|E Chain E, Small Laccase From Amycolatopsis Sp. Atcc 39116 Complexed
With 1-(3,4-
Dimethoxyphenyl)-2-(2-Methoxyphenoxy)-1,
3-Dihydroxypropane
Length = 299
Score = 28.5 bits (62), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 9/25 (36%), Positives = 15/25 (60%)
Query: 443 NPGAWFMHCHLEVHTSWGLKMAWIV 467
PG W HCH++ H+ G+ ++V
Sbjct: 261 GPGMWMYHCHVQNHSDMGMAGMFLV 285
>pdb|4GXF|A Chain A, Role Of The Biradical Intermediate Observed During The
Turnover Of Slac: A Two-Domain Laccase From Streptomyces
Coelicolor
pdb|4GXF|B Chain B, Role Of The Biradical Intermediate Observed During The
Turnover Of Slac: A Two-Domain Laccase From Streptomyces
Coelicolor
pdb|4GXF|C Chain C, Role Of The Biradical Intermediate Observed During The
Turnover Of Slac: A Two-Domain Laccase From Streptomyces
Coelicolor
Length = 279
Score = 28.5 bits (62), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 445 GAWFMHCHLEVHTSWGLKMAWIV 467
GAW HCH++ H+ G+ ++V
Sbjct: 245 GAWMYHCHVQSHSDMGMVGLFLV 267
>pdb|4GY4|A Chain A, Role Of The Biradical Intermediate Observed During The
Turnover Of Slac: A Two-Domain Laccase From Streptomyces
Coelicolor
pdb|4GY4|B Chain B, Role Of The Biradical Intermediate Observed During The
Turnover Of Slac: A Two-Domain Laccase From Streptomyces
Coelicolor
pdb|4GY4|C Chain C, Role Of The Biradical Intermediate Observed During The
Turnover Of Slac: A Two-Domain Laccase From Streptomyces
Coelicolor
Length = 278
Score = 28.5 bits (62), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 445 GAWFMHCHLEVHTSWGLKMAWIV 467
GAW HCH++ H+ G+ ++V
Sbjct: 244 GAWMYHCHVQSHSDMGMVGLFLV 266
>pdb|3TAS|A Chain A, Small Laccase From Streptomyces Viridosporus T7a
pdb|3TAS|B Chain B, Small Laccase From Streptomyces Viridosporus T7a
pdb|3TAS|C Chain C, Small Laccase From Streptomyces Viridosporus T7a
pdb|3TBB|A Chain A, Small Laccase From Streptomyces Viridosporus T7a;
Alternate Crystal Form.
pdb|3TBB|B Chain B, Small Laccase From Streptomyces Viridosporus T7a;
Alternate Crystal Form.
pdb|3TBB|C Chain C, Small Laccase From Streptomyces Viridosporus T7a;
Alternate Crystal Form.
pdb|3TBC|A Chain A, Small Laccase From Streptomyces Viridosporus T7a;
Alternate Crystal Form Complexed With Acetovanillone.
pdb|3TBC|B Chain B, Small Laccase From Streptomyces Viridosporus T7a;
Alternate Crystal Form Complexed With Acetovanillone.
pdb|3TBC|C Chain C, Small Laccase From Streptomyces Viridosporus T7a;
Alternate Crystal Form Complexed With Acetovanillone
Length = 313
Score = 28.5 bits (62), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 445 GAWFMHCHLEVHTSWGLKMAWIV 467
GAW HCH++ H+ G+ ++V
Sbjct: 247 GAWMYHCHVQSHSDMGMVGLFLV 269
>pdb|3KW8|A Chain A, Two-Domain Laccase From Streptomyces Coelicolor At 2.3 A
Resolution
Length = 276
Score = 28.5 bits (62), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 445 GAWFMHCHLEVHTSWGLKMAWIV 467
GAW HCH++ H+ G+ ++V
Sbjct: 241 GAWMYHCHVQSHSDMGMVGLFLV 263
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.425
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,772,124
Number of Sequences: 62578
Number of extensions: 540446
Number of successful extensions: 1134
Number of sequences better than 100.0: 39
Number of HSP's better than 100.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1021
Number of HSP's gapped (non-prelim): 76
length of query: 487
length of database: 14,973,337
effective HSP length: 103
effective length of query: 384
effective length of database: 8,527,803
effective search space: 3274676352
effective search space used: 3274676352
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)