Query 040938
Match_columns 487
No_of_seqs 203 out of 1491
Neff 8.6
Searched_HMMs 46136
Date Fri Mar 29 13:19:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040938.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040938hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR03389 laccase laccase, pla 100.0 1.1E-96 2E-101 779.3 54.2 478 1-487 61-539 (539)
2 PLN00044 multi-copper oxidase- 100.0 3.5E-93 7.6E-98 746.6 50.0 458 1-487 87-554 (596)
3 PLN02792 oxidoreductase 100.0 2.7E-92 5.9E-97 737.2 48.3 446 1-487 74-523 (536)
4 PLN02991 oxidoreductase 100.0 6.7E-91 1.5E-95 725.6 48.4 433 1-487 86-530 (543)
5 PLN02835 oxidoreductase 100.0 2.7E-90 6E-95 724.6 49.1 436 1-487 87-531 (539)
6 PLN02354 copper ion binding / 100.0 4.4E-90 9.6E-95 723.9 49.2 446 1-487 85-538 (552)
7 PLN02168 copper ion binding / 100.0 8.4E-90 1.8E-94 718.7 48.3 440 1-487 84-541 (545)
8 KOG1263 Multicopper oxidases [ 100.0 1.7E-89 3.8E-94 710.8 49.1 466 1-487 86-555 (563)
9 TIGR03388 ascorbase L-ascorbat 100.0 4.8E-86 1E-90 697.9 49.1 454 1-487 60-538 (541)
10 PLN02191 L-ascorbate oxidase 100.0 4.2E-86 9.2E-91 698.6 48.5 453 1-487 82-561 (574)
11 PLN02604 oxidoreductase 100.0 6.9E-85 1.5E-89 691.0 49.9 453 1-487 83-561 (566)
12 TIGR03390 ascorbOXfungal L-asc 100.0 4.7E-83 1E-87 673.2 45.3 434 1-470 67-534 (538)
13 TIGR01480 copper_res_A copper- 100.0 2.8E-66 6E-71 545.3 40.1 365 1-468 103-587 (587)
14 PRK10965 multicopper oxidase; 100.0 3.2E-64 6.8E-69 526.1 36.9 370 1-468 104-523 (523)
15 PRK10883 FtsI repressor; Provi 100.0 6E-63 1.3E-67 512.2 36.3 346 1-469 104-469 (471)
16 COG2132 SufI Putative multicop 100.0 2.3E-51 4.9E-56 427.5 33.8 356 1-468 91-449 (451)
17 TIGR02376 Cu_nitrite_red nitri 100.0 2.9E-37 6.4E-42 304.2 14.7 208 1-229 83-299 (311)
18 PF00394 Cu-oxidase: Multicopp 100.0 2.4E-29 5.3E-34 225.3 13.1 149 75-227 1-158 (159)
19 PF07731 Cu-oxidase_2: Multico 100.0 2.2E-29 4.7E-34 220.7 11.5 107 359-469 30-136 (138)
20 PF07732 Cu-oxidase_3: Multico 99.8 1.2E-21 2.5E-26 165.3 4.7 64 1-64 53-117 (117)
21 TIGR02376 Cu_nitrite_red nitri 99.6 8E-13 1.7E-17 130.7 23.8 248 106-469 47-297 (311)
22 TIGR03095 rusti_cyanin rusticy 99.4 5.1E-13 1.1E-17 117.1 4.1 56 3-61 79-148 (148)
23 PLN02604 oxidoreductase 99.1 7.1E-10 1.5E-14 118.6 12.8 91 364-471 56-146 (566)
24 PF07732 Cu-oxidase_3: Multico 98.9 9.3E-09 2E-13 86.8 8.6 91 362-470 25-116 (117)
25 TIGR03389 laccase laccase, pla 98.7 1.7E-06 3.7E-11 92.4 22.6 236 107-453 23-264 (539)
26 TIGR03388 ascorbase L-ascorbat 98.6 1.8E-07 3.9E-12 99.9 10.2 92 363-471 32-123 (541)
27 PLN02835 oxidoreductase 98.5 6.9E-06 1.5E-10 87.4 19.2 73 364-450 203-276 (539)
28 PLN02354 copper ion binding / 98.5 8.1E-06 1.8E-10 87.0 18.4 77 362-452 206-283 (552)
29 PLN02168 copper ion binding / 98.4 1.9E-05 4.1E-10 83.9 18.9 83 107-206 46-129 (545)
30 PLN02792 oxidoreductase 98.4 3.4E-05 7.5E-10 81.9 20.3 74 363-450 193-267 (536)
31 PF07731 Cu-oxidase_2: Multico 98.4 3.9E-06 8.5E-11 73.1 10.9 78 126-207 33-121 (138)
32 TIGR03390 ascorbOXfungal L-asc 98.3 7.5E-05 1.6E-09 79.8 22.0 232 107-444 28-266 (538)
33 PLN02991 oxidoreductase 98.3 2.1E-05 4.7E-10 83.4 17.7 83 107-206 48-131 (543)
34 PLN02191 L-ascorbate oxidase 98.3 4.9E-06 1.1E-10 89.3 11.0 85 363-470 54-144 (574)
35 PRK10883 FtsI repressor; Provi 98.3 0.00019 4.1E-09 75.4 22.5 74 364-451 221-295 (471)
36 TIGR03095 rusti_cyanin rusticy 98.2 6.8E-06 1.5E-10 72.2 9.5 90 363-468 52-148 (148)
37 PF00394 Cu-oxidase: Multicopp 98.2 6.1E-06 1.3E-10 73.8 9.1 94 362-469 59-157 (159)
38 TIGR01480 copper_res_A copper- 98.2 4.1E-06 8.9E-11 89.6 9.2 85 109-206 488-572 (587)
39 PRK10965 multicopper oxidase; 98.2 6.1E-06 1.3E-10 87.5 9.9 93 109-208 414-510 (523)
40 TIGR02656 cyanin_plasto plasto 97.8 0.00012 2.6E-09 59.9 8.1 82 364-468 18-99 (99)
41 COG2132 SufI Putative multicop 97.7 0.00038 8.3E-09 73.1 13.3 183 11-207 236-435 (451)
42 PLN00044 multi-copper oxidase- 97.7 0.00016 3.4E-09 77.6 9.3 90 363-471 60-150 (596)
43 KOG1263 Multicopper oxidases [ 97.7 0.0074 1.6E-07 64.3 21.6 229 107-452 48-286 (563)
44 TIGR03096 nitroso_cyanin nitro 97.4 0.0007 1.5E-08 57.8 8.1 59 364-453 62-120 (135)
45 PF00127 Copper-bind: Copper b 97.2 0.0018 4E-08 52.8 8.1 83 363-468 17-99 (99)
46 PRK02888 nitrous-oxide reducta 97.0 0.0034 7.4E-08 66.7 9.4 78 364-469 556-634 (635)
47 PF00127 Copper-bind: Copper b 96.9 0.0012 2.6E-08 53.9 4.2 37 21-61 63-99 (99)
48 TIGR02656 cyanin_plasto plasto 96.9 0.00099 2.1E-08 54.4 3.6 37 21-61 63-99 (99)
49 PF13473 Cupredoxin_1: Cupredo 96.9 0.0047 1E-07 50.9 7.6 68 364-466 36-103 (104)
50 PRK02710 plastocyanin; Provisi 96.5 0.012 2.6E-07 49.7 7.8 72 364-468 48-119 (119)
51 TIGR02375 pseudoazurin pseudoa 95.8 0.045 9.7E-07 45.9 7.6 38 431-472 54-91 (116)
52 TIGR03096 nitroso_cyanin nitro 95.8 0.045 9.8E-07 46.8 7.6 62 126-207 60-121 (135)
53 PF13473 Cupredoxin_1: Cupredo 95.2 0.085 1.8E-06 43.3 7.3 61 126-206 34-94 (104)
54 COG4454 Uncharacterized copper 94.9 0.05 1.1E-06 47.2 5.1 93 365-468 65-157 (158)
55 PRK02710 plastocyanin; Provisi 94.7 0.034 7.3E-07 47.0 3.6 37 21-61 83-119 (119)
56 TIGR03102 halo_cynanin halocya 94.2 0.41 9E-06 40.0 9.0 73 364-468 43-115 (115)
57 TIGR02657 amicyanin amicyanin. 94.2 0.42 9.2E-06 37.4 8.7 72 364-468 12-83 (83)
58 TIGR03102 halo_cynanin halocya 93.5 0.1 2.2E-06 43.7 4.1 36 22-61 80-115 (115)
59 PRK02888 nitrous-oxide reducta 93.0 0.1 2.3E-06 55.7 4.3 43 20-63 591-635 (635)
60 PF06525 SoxE: Sulfocyanin (So 93.0 1.4 3.1E-05 40.1 10.8 101 361-471 84-189 (196)
61 PF06525 SoxE: Sulfocyanin (So 92.8 0.15 3.3E-06 46.2 4.5 46 20-66 145-191 (196)
62 TIGR02657 amicyanin amicyanin. 92.2 0.17 3.8E-06 39.6 3.6 34 22-61 50-83 (83)
63 TIGR03094 sulfo_cyanin sulfocy 91.5 0.27 5.8E-06 43.9 4.3 44 21-65 145-189 (195)
64 TIGR03094 sulfo_cyanin sulfocy 91.3 2 4.4E-05 38.4 9.5 100 361-470 83-187 (195)
65 COG4454 Uncharacterized copper 90.9 0.5 1.1E-05 41.2 5.2 74 127-206 63-142 (158)
66 PF00116 COX2: Cytochrome C ox 89.7 3.8 8.2E-05 34.6 9.6 74 362-467 45-119 (120)
67 TIGR02375 pseudoazurin pseudoa 89.5 0.57 1.2E-05 39.3 4.4 38 23-64 53-90 (116)
68 COG3794 PetE Plastocyanin [Ene 89.2 2.2 4.8E-05 36.3 7.8 74 364-469 55-128 (128)
69 TIGR02866 CoxB cytochrome c ox 87.1 2.8 6E-05 38.9 7.8 74 363-470 117-193 (201)
70 PF12690 BsuPI: Intracellular 86.7 7.6 0.00017 30.3 8.9 68 136-204 3-82 (82)
71 TIGR02695 azurin azurin. Azuri 82.6 9.4 0.0002 32.2 8.1 81 126-206 15-112 (125)
72 PF00116 COX2: Cytochrome C ox 82.5 15 0.00033 30.9 9.6 60 127-207 46-105 (120)
73 COG3794 PetE Plastocyanin [Ene 81.0 1.8 4E-05 36.8 3.4 36 23-62 93-128 (128)
74 PF01835 A2M_N: MG2 domain; I 76.5 8.3 0.00018 30.9 6.0 72 130-206 10-85 (99)
75 COG1622 CyoA Heme/copper-type 71.7 23 0.00051 33.9 8.5 77 362-470 136-213 (247)
76 TIGR02695 azurin azurin. Azuri 67.4 6.3 0.00014 33.3 3.2 40 21-60 84-125 (125)
77 PF04151 PPC: Bacterial pre-pe 65.3 31 0.00067 25.6 6.6 66 126-205 4-69 (70)
78 PF07691 PA14: PA14 domain; I 64.1 58 0.0013 27.6 9.1 62 129-195 54-122 (145)
79 COG1470 Predicted membrane pro 63.4 40 0.00088 35.0 8.7 76 127-209 389-470 (513)
80 PF10633 NPCBM_assoc: NPCBM-as 62.8 65 0.0014 24.4 8.2 66 131-205 1-74 (78)
81 PF07705 CARDB: CARDB; InterP 60.9 78 0.0017 24.7 9.8 67 130-206 14-83 (101)
82 COG1622 CyoA Heme/copper-type 55.1 12 0.00026 35.8 3.2 46 19-65 168-215 (247)
83 smart00758 PA14 domain in bact 52.8 99 0.0021 26.0 8.5 63 128-195 51-114 (136)
84 MTH00047 COX2 cytochrome c oxi 51.5 1.3E+02 0.0029 27.6 9.4 76 363-470 116-192 (194)
85 PF14344 DUF4397: Domain of un 49.7 1.5E+02 0.0032 24.5 11.6 38 157-194 45-84 (122)
86 TIGR02866 CoxB cytochrome c ox 48.8 66 0.0014 29.6 7.1 60 127-207 117-176 (201)
87 PF11142 DUF2917: Protein of u 47.9 55 0.0012 24.0 5.1 46 129-186 2-47 (63)
88 TIGR01433 CyoA cytochrome o ub 46.5 61 0.0013 30.6 6.5 75 364-470 140-215 (226)
89 PRK10378 inactive ferrous ion 45.8 24 0.00053 35.9 3.9 39 21-64 81-119 (375)
90 PF15415 DUF4622: Protein of u 45.2 1.3E+02 0.0027 28.5 8.0 42 127-170 94-137 (310)
91 TIGR01432 QOXA cytochrome aa3 43.0 73 0.0016 29.8 6.5 74 364-469 131-205 (217)
92 PF14874 PapD-like: Flagellar- 42.1 1.7E+02 0.0038 23.1 9.2 60 130-201 15-81 (102)
93 COG3354 FlaG Putative archaeal 41.6 1.8E+02 0.0038 25.3 7.7 64 135-205 70-141 (154)
94 MTH00140 COX2 cytochrome c oxi 41.0 1.4E+02 0.0031 28.1 8.2 76 362-469 139-215 (228)
95 cd00918 Der-p2_like Several gr 38.9 35 0.00076 28.7 3.3 23 11-34 65-87 (120)
96 PTZ00047 cytochrome c oxidase 38.7 2E+02 0.0043 25.6 8.0 75 363-469 73-148 (162)
97 COG4263 NosZ Nitrous oxide red 38.2 1E+02 0.0022 32.0 6.8 43 426-468 593-636 (637)
98 PRK10378 inactive ferrous ion 36.1 1.5E+02 0.0032 30.3 7.8 38 428-470 81-118 (375)
99 PF11614 FixG_C: IG-like fold 34.1 1.3E+02 0.0028 24.8 6.1 49 136-193 34-84 (118)
100 PF12690 BsuPI: Intracellular 32.6 37 0.00079 26.5 2.2 34 10-43 41-80 (82)
101 PRK13211 N-acetylglucosamine-b 32.6 3.7E+02 0.008 28.5 10.2 22 126-147 210-231 (478)
102 PF14392 zf-CCHC_4: Zinc knuck 30.4 70 0.0015 22.0 3.2 41 419-459 4-45 (49)
103 MTH00129 COX2 cytochrome c oxi 29.8 1.9E+02 0.0041 27.4 7.0 76 362-469 139-215 (230)
104 PRK10525 cytochrome o ubiquino 28.6 1.5E+02 0.0032 29.6 6.2 73 364-468 152-225 (315)
105 MTH00139 COX2 cytochrome c oxi 28.0 2.1E+02 0.0045 27.0 6.9 75 362-468 139-214 (226)
106 PF10989 DUF2808: Protein of u 28.0 63 0.0014 28.1 3.2 27 428-454 98-128 (146)
107 MTH00185 COX2 cytochrome c oxi 27.6 3.7E+02 0.0081 25.4 8.5 74 362-467 139-213 (230)
108 PF14524 Wzt_C: Wzt C-terminal 27.6 2.4E+02 0.0052 23.5 6.8 74 130-206 30-107 (142)
109 PRK05461 apaG CO2+/MG2+ efflux 27.0 1.9E+02 0.0041 24.6 5.8 49 136-187 32-84 (127)
110 PF04379 DUF525: Protein of un 26.9 1.2E+02 0.0025 24.2 4.2 49 136-187 15-67 (90)
111 MTH00098 COX2 cytochrome c oxi 26.8 3.9E+02 0.0085 25.2 8.5 75 362-468 139-214 (227)
112 PF10989 DUF2808: Protein of u 26.7 1.7E+02 0.0038 25.3 5.8 32 179-210 99-131 (146)
113 cd08058 MPN_euk_mb Mpr1p, Pad1 26.5 26 0.00055 29.3 0.4 6 42-47 70-75 (119)
114 PF03459 TOBE: TOBE domain; I 25.8 41 0.0009 24.2 1.4 50 139-193 12-61 (64)
115 PF14326 DUF4384: Domain of un 24.8 3.2E+02 0.007 20.9 8.4 24 131-154 3-26 (83)
116 cd00912 ML The ML (MD-2-relate 24.6 62 0.0014 27.2 2.5 18 18-35 78-95 (127)
117 COG2967 ApaG Uncharacterized p 24.5 45 0.00098 27.8 1.5 22 12-34 66-87 (126)
118 MTH00038 COX2 cytochrome c oxi 24.0 3.7E+02 0.0079 25.4 7.8 69 362-462 139-207 (229)
119 PF13464 DUF4115: Domain of un 23.6 1.5E+02 0.0032 22.5 4.2 37 128-167 31-67 (77)
120 TIGR02745 ccoG_rdxA_fixG cytoc 23.5 2.5E+02 0.0053 29.4 7.0 51 136-194 349-400 (434)
121 MTH00117 COX2 cytochrome c oxi 23.4 4.6E+02 0.01 24.7 8.4 74 362-467 139-213 (227)
122 MTH00008 COX2 cytochrome c oxi 23.2 5E+02 0.011 24.5 8.5 75 362-468 139-214 (228)
123 KOG4063 Major epididymal secre 23.1 63 0.0014 28.2 2.2 17 19-35 107-123 (158)
124 PF14016 DUF4232: Protein of u 23.0 2.9E+02 0.0062 23.3 6.4 56 136-194 21-83 (131)
125 MTH00047 COX2 cytochrome c oxi 22.8 3.1E+02 0.0068 25.2 6.9 59 128-207 117-175 (194)
126 KOG1555 26S proteasome regulat 22.7 32 0.00069 33.9 0.3 8 41-48 119-126 (316)
127 PF02221 E1_DerP2_DerF2: ML do 22.4 63 0.0014 27.2 2.1 17 18-34 84-100 (134)
128 COG3241 Azurin [Energy product 22.1 1E+02 0.0022 25.9 3.1 40 167-206 93-136 (151)
129 PF05938 Self-incomp_S1: Plant 21.9 1.8E+02 0.004 23.6 4.7 42 426-470 28-71 (110)
130 PF08329 ChitinaseA_N: Chitina 21.6 1.8E+02 0.004 24.9 4.7 63 108-174 56-120 (133)
131 cd08067 MPN_2A_DUB Mov34/MPN/P 21.5 37 0.0008 31.0 0.5 8 42-49 84-91 (187)
132 PRK05461 apaG CO2+/MG2+ efflux 21.5 57 0.0012 27.8 1.6 20 11-31 66-85 (127)
133 MTH00023 COX2 cytochrome c oxi 21.3 5.7E+02 0.012 24.3 8.5 75 362-468 150-225 (240)
134 PF11611 DUF4352: Domain of un 21.0 4.5E+02 0.0098 21.3 8.4 66 137-205 40-113 (123)
135 PF07696 7TMR-DISMED2: 7TMR-DI 20.4 4.9E+02 0.011 21.6 7.4 60 135-194 48-129 (141)
136 PRK03999 translation initiatio 20.2 5.4E+02 0.012 21.8 8.3 41 105-155 13-60 (129)
137 PF11906 DUF3426: Protein of u 20.1 3.4E+02 0.0073 23.3 6.4 56 137-195 72-138 (149)
No 1
>TIGR03389 laccase laccase, plant. Members of this protein family include the copper-containing enzyme laccase (EC 1.10.3.2), often several from a single plant species, and additional, uncharacterized, closely related plant proteins termed laccase-like multicopper oxidases. This protein family shows considerable sequence similarity to the L-ascorbate oxidase (EC 1.10.3.3) family. Laccases are enzymes of rather broad specificity, and classification of all proteins scoring about the trusted cutoff of this model as laccases may be appropriate.
Probab=100.00 E-value=1.1e-96 Score=779.31 Aligned_cols=478 Identities=72% Similarity=1.278 Sum_probs=381.8
Q ss_pred CccccCCCCCCCCCCCcccccCCCCCeEEEEEEeCCCccceeeccccccccccceeeEEEeCCCCCCCCCCCCCcceeEE
Q 040938 1 HGVRQLRSGWADGPAYITQCPIQTGQSYVYNFTVTGQRGTLFWHAHISWLRATLYGPIVILPKRHASYPFPQPFKEVPMI 80 (487)
Q Consensus 1 HGl~~~~~~~~DGv~~vtq~~I~PG~~~~Y~f~~~~~~Gt~wYH~H~~~~~~Gl~G~liV~~~~~~~~~~~~~d~e~~l~ 80 (487)
|||+|++++||||||++|||||+||++|+|+|++++++||||||||.+.+++||+|+|||+++.+.+++++.+|+|++|+
T Consensus 61 HGl~q~~~~~~DGv~~vTq~pI~PG~s~~Y~f~~~~~~GT~WYHsH~~~~~~Gl~G~lIV~~~~~~~~~~~~~d~e~~l~ 140 (539)
T TIGR03389 61 HGVRQLRNGWADGPAYITQCPIQPGQSYVYNFTITGQRGTLWWHAHISWLRATVYGAIVILPKPGVPYPFPKPDREVPII 140 (539)
T ss_pred CCCCCCCCCCCCCCcccccCCcCCCCeEEEEEEecCCCeeEEEecCchhhhccceEEEEEcCCCCCCCCCCCCCceEEEE
Confidence 99999999999999999999999999999999986799999999999988899999999999877677777789999999
Q ss_pred eeeccccChHHHHHHHhhcCCCCCCCCeEEEcCcCCCCCCCCCCceeeEEEeCCCEEEEEEEecCCCceEEEEEcCceEE
Q 040938 81 FGEWWKADTEKIINQALQTGAAPNISDAFTINGLPGPLYNCSAKDTFKLKVKPGKTYLLRMINAALNDELFFSIANHTLT 160 (487)
Q Consensus 81 l~d~~~~~~~~~~~~~~~~g~~~~~~d~~lvNG~~~~~~~~~~~~~~~~~v~~G~~~rlR~iN~~~~~~~~~~i~~h~~~ 160 (487)
|+||++.+...++......|..+.++|++|||||.+++++|+....++|+|++||+|||||||+|+.+.+.|+|+||+|+
T Consensus 141 l~Dw~~~~~~~~~~~~~~~~~~~~~~d~~liNG~~~~~~~~~~~~~~~i~v~~G~~~RlRlINa~~~~~~~~~idgH~~~ 220 (539)
T TIGR03389 141 LGEWWNADVEAVINQANQTGGAPNVSDAYTINGHPGPLYNCSSKDTFKLTVEPGKTYLLRIINAALNDELFFAIANHTLT 220 (539)
T ss_pred ecccccCCHHHHHHHHHhcCCCCCccceEEECCCcCCCCCCCCCCceEEEECCCCEEEEEEEeccCCceEEEEECCCeEE
Confidence 99999998877766555556556678999999998888899877788999999999999999999999999999999999
Q ss_pred EEEecCcccceeEeeEEEeCCCceEEEEEEecCCCCCcceEEEeccCCCCCCCCCCcceEEEEEEecCCCCCCCCCCCCC
Q 040938 161 VVETDAVYVKPIKTKVVLITPGQTTNVLLKAKHKSPNASFLIAARPYATGPASFDNTTTAGVLEYEQPNNANKNKKLPLL 240 (487)
Q Consensus 161 via~DG~~v~P~~~~~l~l~pG~R~dv~v~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~~~~~ 240 (487)
|||+||.+++|++++.|.|++||||||+|++++.+ |+||||+.....+..........|+|+|.+..... .+..
T Consensus 221 VIa~DG~~~~P~~~~~l~i~~GqRydVlv~a~~~~--g~y~i~~~~~~~~~~~~~~~~~~ail~Y~~~~~~~----~p~~ 294 (539)
T TIGR03389 221 VVEVDATYTKPFKTKTIVIGPGQTTNVLLTADQSP--GRYFMAARPYMDAPGAFDNTTTTAILQYKGTSNSA----KPIL 294 (539)
T ss_pred EEEeCCcccCceEeCeEEecCCCEEEEEEECCCCC--ceEEEEEeccccCccCCCCcceEEEEEECCCCCCC----CCCC
Confidence 99999999999999999999999999999999876 99999998754443223345689999998764321 1112
Q ss_pred CCCCCCCCCchhhhhhhhhhhccccCCCCCCCCCCcccEEEEEecccccCCCCCCcccCCCCCceeeeecceeccCCChh
Q 040938 241 KPALPKFNDTNFAMQFSKKIRSLATAKFPAKVPRKVDRLFFFTVGLGLSPCPQNQTCQGPNNTMLAASINNVSFAQPNIA 320 (487)
Q Consensus 241 ~p~~p~~~~~~~~~~~~~~~~~~~~~~~p~~~p~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iN~~~~~~p~~~ 320 (487)
+..+...+......+...++.+..+.++..+|..+++++++.+.+...... ...+...++..+.|++|+++|..|..|
T Consensus 295 -~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~w~in~~s~~~p~~p 372 (539)
T TIGR03389 295 -PTLPAYNDTAAATNFSNKLRSLNSAQYPANVPVTIDRRLFFTIGLGLDPCP-NNTCQGPNGTRFAASMNNISFVMPTTA 372 (539)
T ss_pred -CCCCCCCchhhhhHHHhhcccccccCCCCCCCCCCCeEEEEEeecccccCc-ccccccCCCcEEEEEECCcccCCCCcc
Confidence 222223332221112223444433333444555667777766655432110 001112234568899999999999889
Q ss_pred hhhhhhcCcccCcccCCCCCCCCccccCCCCC-CCCcccCCCceEEEecCCCEEEEEEeeCCCCCCCCCCeeecCCceEE
Q 040938 321 LLQAHFFNKSKGVYTTDFPANPPFKFNYTGTP-PSNIMVSSGTRAVALPFNASVEVVMQDTSIIGAESHPLHLHGFNFFV 399 (487)
Q Consensus 321 ~l~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~-~~~~~~~~~~~~~~v~~g~~v~~~l~n~~~~~~~~HP~HlHg~~f~V 399 (487)
+|.+.+.+++ +.+..+++..+|+.|++++.. +.+...+.+++++.++.|++|+|+|+|........||||||||+|||
T Consensus 373 ~l~~~~~~~~-~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~V~ivi~n~~~~~~~~HP~HLHGh~F~V 451 (539)
T TIGR03389 373 LLQAHYFGIS-GVFTTDFPANPPTKFNYTGTNLPNNLFTTNGTKVVRLKFNSTVELVLQDTSILGSENHPIHLHGYNFFV 451 (539)
T ss_pred hhhhhhcccC-CccccCCccCCCccccCCCCCcccccccccCceEEEecCCCEEEEEEecCCcCCCCCCcEeEcCCceEE
Confidence 8877766544 555566777778777765532 11212344678999999999999999964323458999999999999
Q ss_pred EEecCCCCCCCCCCCCCCCCCCCccceEEecCCcEEEEEEEcCCCeeEEEeecchhhhhccceEEEEEeCCCCCCCCCCC
Q 040938 400 VGQGFGNFDPSKDPAKFNLVDPAERNTVGVPSGGWVAIRFLADNPGAWFMHCHLEVHTSWGLKMAWIVNDGKGPKQKLPP 479 (487)
Q Consensus 400 l~~g~g~~~~~~~~~~~n~~~p~~rDtv~v~~~~~~~irf~~dnpG~w~~HCHi~~H~~~GM~~~~~V~~~~~~~~~~~~ 479 (487)
|++|.|.|+..+....+|+.||++|||+.|+++||++|||++||||.|+|||||.||+..||+++|.+.++.+..+.+++
T Consensus 452 lg~g~g~~~~~~~~~~~nl~nP~rRDTv~vp~~g~vvirf~adNPG~W~~HCHi~~H~~~Gm~~~~~~~~~~~~~~~~~~ 531 (539)
T TIGR03389 452 VGTGFGNFDPKKDPAKFNLVDPPERNTVGVPTGGWAAIRFVADNPGVWFMHCHLEVHTTWGLKMAFLVDNGKGPNQSLLP 531 (539)
T ss_pred EEeccCCCCcccCccccccCCCCeeeeEEcCCCceEEEEEecCCCeEEEEEecccchhhhcceEEEEEccCCCCccccCC
Confidence 99999999876545578999999999999999999999999999999999999999999999999999988877889999
Q ss_pred CCCCCCCC
Q 040938 480 PPSDLPKC 487 (487)
Q Consensus 480 ~p~~~~~c 487 (487)
+|+.+|+|
T Consensus 532 ~p~~~~~c 539 (539)
T TIGR03389 532 PPSDLPSC 539 (539)
T ss_pred CCccCCCC
Confidence 99999999
No 2
>PLN00044 multi-copper oxidase-related protein; Provisional
Probab=100.00 E-value=3.5e-93 Score=746.60 Aligned_cols=458 Identities=27% Similarity=0.445 Sum_probs=363.4
Q ss_pred CccccCCCCCCCCCCCcccccCCCCCeEEEEEEeCCCccceeecccccccc-ccceeeEEEeCCCCCCCCCCCCC-ccee
Q 040938 1 HGVRQLRSGWADGPAYITQCPIQTGQSYVYNFTVTGQRGTLFWHAHISWLR-ATLYGPIVILPKRHASYPFPQPF-KEVP 78 (487)
Q Consensus 1 HGl~~~~~~~~DGv~~vtq~~I~PG~~~~Y~f~~~~~~Gt~wYH~H~~~~~-~Gl~G~liV~~~~~~~~~~~~~d-~e~~ 78 (487)
|||+|++++|||||++ |||||+||++|+|+|++++|+||||||||...|+ +||+|+|||++++..++|+...+ .|.+
T Consensus 87 HGl~q~~t~w~DGv~~-TQcPI~PG~sftY~F~~~dq~GT~WYHsH~~~Q~~~Gl~GalII~~~~~~~~P~~~~~~~e~~ 165 (596)
T PLN00044 87 HGVQQRKSAWQDGVGG-TNCAIPAGWNWTYQFQVKDQVGSFFYAPSTALHRAAGGYGAITINNRDVIPIPFGFPDGGDIT 165 (596)
T ss_pred CCccCCCCccccCCCC-CcCCcCCCCcEEEEEEeCCCCceeEeeccchhhhhCcCeeEEEEcCcccccccccCCcccceE
Confidence 9999999999999988 9999999999999999977999999999999998 79999999999876666665444 7999
Q ss_pred EEeeeccccChHHHHHHHhhcCCCCCCCCeEEEcCcCCCCCCCC----CCceeeEEEeCCCEEEEEEEecCCCceEEEEE
Q 040938 79 MIFGEWWKADTEKIINQALQTGAAPNISDAFTINGLPGPLYNCS----AKDTFKLKVKPGKTYLLRMINAALNDELFFSI 154 (487)
Q Consensus 79 l~l~d~~~~~~~~~~~~~~~~g~~~~~~d~~lvNG~~~~~~~~~----~~~~~~~~v~~G~~~rlR~iN~~~~~~~~~~i 154 (487)
|+|+||++.+...+ ......|..+..+|++||||++...++|+ +...++++|++||+|||||||+|..+.+.|+|
T Consensus 166 i~l~DW~~~~~~~~-~~~l~~g~~~~~~d~~lING~g~~~~n~~~~~~~~~~~~i~V~~Gk~yRlRiINaa~~~~~~fsI 244 (596)
T PLN00044 166 LFIADWYARDHRAL-RRALDAGDLLGAPDGVLINAFGPYQYNDSLVPPGITYERINVDPGKTYRFRVHNVGVATSLNFRI 244 (596)
T ss_pred EEecccccCCHHHH-HHHHhcCCCCCCCCceEEcccCccccCCccccCCCccceEEECCCCEEEEEEEEccCCceEEEEE
Confidence 99999999886654 33344554455789999999965445664 23456899999999999999999999999999
Q ss_pred cCceEEEEEecCcccceeEeeEEEeCCCceEEEEEEecCCCCCcceEEEeccC-CCCCCCCCCcceEEEEEEecCCCCCC
Q 040938 155 ANHTLTVVETDAVYVKPIKTKVVLITPGQTTNVLLKAKHKSPNASFLIAARPY-ATGPASFDNTTTAGVLEYEQPNNANK 233 (487)
Q Consensus 155 ~~h~~~via~DG~~v~P~~~~~l~l~pG~R~dv~v~~~~~~~~g~~~i~~~~~-~~~~~~~~~~~~~ail~y~~~~~~~~ 233 (487)
+||+|+|||+||.+++|+.++.|.|++||||||+|++++++ +++|||++... ..+. .+++..+.|||+|.++.....
T Consensus 245 dgH~mtVIa~DG~~v~P~~vd~i~I~~GQRydVLV~a~q~~-~~~Y~i~a~~~~~~~~-~~~~~~~~AIl~Y~~~~~~~~ 322 (596)
T PLN00044 245 QGHNLLLVEAEGSYTSQQNYTNLDIHVGQSYSFLLTMDQNA-STDYYVVASARFVDAA-VVDKLTGVAILHYSNSQGPAS 322 (596)
T ss_pred CCCEEEEEEeCCcccCceeeeeEEEcCCceEEEEEECCCCC-CCceEEEEecccccCc-cccCcceeEEEEECCCCCCCC
Confidence 99999999999999999999999999999999999999875 24899998642 2221 245567899999987532111
Q ss_pred CCCCCCCCCCCCC-CCCchhhhhhhhhhhccccCCCCCCCCCCcccEEEEEecccc-cCCCCCCcccCCCCCceeeeecc
Q 040938 234 NKKLPLLKPALPK-FNDTNFAMQFSKKIRSLATAKFPAKVPRKVDRLFFFTVGLGL-SPCPQNQTCQGPNNTMLAASINN 311 (487)
Q Consensus 234 ~~~~~~~~p~~p~-~~~~~~~~~~~~~~~~~~~~~~p~~~p~~~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~iN~ 311 (487)
. .+ |..+. +.++....++...++.+..++.+.+.|...+....+++.... ..+.....| . .++.|++||
T Consensus 323 ---~-~~-P~~p~~~~d~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~---~-g~~~~s~Nn 393 (596)
T PLN00044 323 ---G-PL-PDAPDDQYDTAFSINQARSIRWNVTASGARPNPQGSFHYGDITVTDVYLLQSMAPELI---D-GKLRATLNE 393 (596)
T ss_pred ---C-CC-CCCCcccCCchhhhhhhHhhhhccCCCcCCCCCcccceeeEEeeeeeeeecccccccc---C-CeEEEEECc
Confidence 1 13 44453 556554444555565443333223334333443333332111 011001112 1 367899999
Q ss_pred eeccCCChhhhhhhhcCcccCcccCCCCCCCCccccCCCCCCCCcccCCCceEEEecCCCEEEEEEeeCCCCCCCCCCee
Q 040938 312 VSFAQPNIALLQAHFFNKSKGVYTTDFPANPPFKFNYTGTPPSNIMVSSGTRAVALPFNASVEVVMQDTSIIGAESHPLH 391 (487)
Q Consensus 312 ~~~~~p~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~~l~n~~~~~~~~HP~H 391 (487)
.+|..|+.|+|.+++.+.+ |.|..+|++.||... ....+.++.++.|++|||+|+|.. ...||||
T Consensus 394 vsf~~p~~p~L~a~~~~~~-gv~~~~fp~~pp~~~-----------~~~~t~v~~~~~n~~VeiV~qn~~---~~~HP~H 458 (596)
T PLN00044 394 ISYIAPSTPLMLAQIFNVP-GVFKLDFPNHPMNRL-----------PKLDTSIINGTYKGFMEIIFQNNA---TNVQSYH 458 (596)
T ss_pred ccCCCCCCcchhhhhccCC-CcccCCCCCCCCccc-----------cccCceEEEcCCCCEEEEEEeCCC---CCCCCee
Confidence 9999999999877776665 888888887776311 123578899999999999999953 4689999
Q ss_pred ecCCceEEEEecCCCCCCCCCCCCCCCCCCCccceEEecCCcEEEEEEEcCCCeeEEEeecchhhhhccceEEEEEeCCC
Q 040938 392 LHGFNFFVVGQGFGNFDPSKDPAKFNLVDPAERNTVGVPSGGWVAIRFLADNPGAWFMHCHLEVHTSWGLKMAWIVNDGK 471 (487)
Q Consensus 392 lHg~~f~Vl~~g~g~~~~~~~~~~~n~~~p~~rDtv~v~~~~~~~irf~~dnpG~w~~HCHi~~H~~~GM~~~~~V~~~~ 471 (487)
||||+|+||++|.|.|++. .+..+|+.||++|||+.|+++||++|||++||||.|+|||||..|+..||...|.|+++.
T Consensus 459 LHGh~F~Vvg~G~G~~~~~-~~~~~Nl~nPp~RdTv~vp~~gW~aIRF~aDNPG~W~lHCH~~~h~~~Gm~~~~~v~~~~ 537 (596)
T PLN00044 459 LDGYAFFVVGMDYGLWTDN-SRGTYNKWDGVARSTIQVFPGAWTAILVFLDNAGIWNLRVENLDAWYLGQEVYINVVNPE 537 (596)
T ss_pred EcCccEEEEeecCCCCCCC-cccccccCCCCccceEEeCCCCeEEEEEecCCCEEehhhccCchhhcccCcEEEEEecCC
Confidence 9999999999999999965 456899999999999999999999999999999999999999999999999999999998
Q ss_pred CC-CCCCCCCCCCCCCC
Q 040938 472 GP-KQKLPPPPSDLPKC 487 (487)
Q Consensus 472 ~~-~~~~~~~p~~~~~c 487 (487)
+. .+++++||.++++|
T Consensus 538 ~~~~~~~~~pP~~~~~C 554 (596)
T PLN00044 538 DNSNKTVLPIPDNAIFC 554 (596)
T ss_pred CCccccccCCCcccCcc
Confidence 76 78999999999999
No 3
>PLN02792 oxidoreductase
Probab=100.00 E-value=2.7e-92 Score=737.20 Aligned_cols=446 Identities=24% Similarity=0.414 Sum_probs=349.9
Q ss_pred CccccCCCCCCCCCCCcccccCCCCCeEEEEEEeCCCccceeecccccccc-ccceeeEEEeCCCCCCCCCCCCCcceeE
Q 040938 1 HGVRQLRSGWADGPAYITQCPIQTGQSYVYNFTVTGQRGTLFWHAHISWLR-ATLYGPIVILPKRHASYPFPQPFKEVPM 79 (487)
Q Consensus 1 HGl~~~~~~~~DGv~~vtq~~I~PG~~~~Y~f~~~~~~Gt~wYH~H~~~~~-~Gl~G~liV~~~~~~~~~~~~~d~e~~l 79 (487)
|||+|++++|||||++ |||||+||++|+|+|++++|+||||||||...|+ +||+|+|||+++++.+.+++.++.|++|
T Consensus 74 HGl~q~~~~~~DGv~~-tqcPI~PG~sftY~F~~~~q~GT~WYHsH~~~q~~~Gl~G~liI~~~~~~~~p~~~~d~e~~i 152 (536)
T PLN02792 74 NGVHMRKNSYQDGVYG-TTCPIPPGKNYTYDFQVKDQVGSYFYFPSLAVQKAAGGYGSLRIYSLPRIPVPFPEPAGDFTF 152 (536)
T ss_pred CCcccCCCCccCCCCC-CcCccCCCCcEEEEEEeCCCccceEEecCcchhhhcccccceEEeCCcccCcCCCcccceeEE
Confidence 9999999999999988 9999999999999999877999999999999998 7999999999866555667778899999
Q ss_pred EeeeccccChHHHHHHHhhcCCC-CCCCCeEEEcCcCCCCCCCCCCceeeEEEeCCCEEEEEEEecCCCceEEEEEcCce
Q 040938 80 IFGEWWKADTEKIINQALQTGAA-PNISDAFTINGLPGPLYNCSAKDTFKLKVKPGKTYLLRMINAALNDELFFSIANHT 158 (487)
Q Consensus 80 ~l~d~~~~~~~~~~~~~~~~g~~-~~~~d~~lvNG~~~~~~~~~~~~~~~~~v~~G~~~rlR~iN~~~~~~~~~~i~~h~ 158 (487)
+|+||++.+...+.. ....+.. +..+|++||||+...+ .++|+|++||+|||||||+|..+.+.|+|+||+
T Consensus 153 ~l~Dw~~~~~~~~~~-~~~~g~~~~~~~d~~liNG~~~~~-------~~~~~v~~Gk~yRlRliNa~~~~~~~f~i~gH~ 224 (536)
T PLN02792 153 LIGDWYRRNHTTLKK-ILDGGRKLPLMPDGVMINGQGVSY-------VYSITVDKGKTYRFRISNVGLQTSLNFEILGHQ 224 (536)
T ss_pred EecccccCCHHHHHH-HhhccCcCCCCCCEEEEeccCCCC-------cceEEECCCCEEEEEEEEcCCCceEEEEECCcE
Confidence 999999988665433 3334433 3478999999996421 368999999999999999999999999999999
Q ss_pred EEEEEecCcccceeEeeEEEeCCCceEEEEEEecCCCCCcceEEEeccCCCCCCCCCCcceEEEEEEecCCCCCCCCCCC
Q 040938 159 LTVVETDAVYVKPIKTKVVLITPGQTTNVLLKAKHKSPNASFLIAARPYATGPASFDNTTTAGVLEYEQPNNANKNKKLP 238 (487)
Q Consensus 159 ~~via~DG~~v~P~~~~~l~l~pG~R~dv~v~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~~~ 238 (487)
|+|||+||++++|..++.|.|++||||||+|+++++. |+|||++.....+ .+....|||+|.++.... +
T Consensus 225 ~tVI~~DG~~v~p~~~~~l~i~~GqRydVlV~a~~~~--g~Y~i~a~~~~~~----~~~~~~ail~Y~g~~~~~-----~ 293 (536)
T PLN02792 225 LKLIEVEGTHTVQSMYTSLDIHVGQTYSVLVTMDQPP--QNYSIVVSTRFIA----AKVLVSSTLHYSNSKGHK-----I 293 (536)
T ss_pred EEEEEeCCccCCCcceeEEEEccCceEEEEEEcCCCC--ceEEEEEEeccCC----CCCceEEEEEECCCCCCC-----C
Confidence 9999999999999999999999999999999999876 8999999864322 234678999998763211 1
Q ss_pred CCCCCCCCCCCchhhhhhhhhhhccccCCCCCCCCCCcccEEEEEecccc-cCCCCCCcccCCCCCceeeeecceeccCC
Q 040938 239 LLKPALPKFNDTNFAMQFSKKIRSLATAKFPAKVPRKVDRLFFFTVGLGL-SPCPQNQTCQGPNNTMLAASINNVSFAQP 317 (487)
Q Consensus 239 ~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~p~~~p~~~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~iN~~~~~~p 317 (487)
.. |..|.+.+......+...++.+..++.+.++|+..++...+.++... ..+ .... .+.++.|++||.+|..|
T Consensus 294 ~~-p~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~-~~~~----~~~~~~~~iN~~s~~~p 367 (536)
T PLN02792 294 IH-ARQPDPDDLEWSIKQAQSIRTNLTASGPRTNPQGSYHYGKMKISRTLILES-SAAL----VKRKQRYAINGVSFVPS 367 (536)
T ss_pred CC-CCCCCcCCccccccchhhhhhccCCCCCCCCCCcccccceeccceeEEecc-cccc----cCceeEEEECCcccCCC
Confidence 11 33333444433322222233322222233344333322222211110 000 0011 11356899999999999
Q ss_pred ChhhhhhhhcCcccCcccCC-CCCCCCccccCCCCCCCCcccCCCceEEEecCCCEEEEEEeeCCCCCCCCCCeeecCCc
Q 040938 318 NIALLQAHFFNKSKGVYTTD-FPANPPFKFNYTGTPPSNIMVSSGTRAVALPFNASVEVVMQDTSIIGAESHPLHLHGFN 396 (487)
Q Consensus 318 ~~~~l~~~~~~~~~~~~~~~-~~~~~p~~~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~~l~n~~~~~~~~HP~HlHg~~ 396 (487)
+.|+|.+++.+++ |.+..+ ++..||..++ ...++.++.++.|++|||+|+|.. ...||||||||+
T Consensus 368 ~~p~L~a~~~~~~-g~~~~~~~~~~p~~~~~----------~~~~~~v~~~~~~~~VeiViqn~~---~~~HP~HLHGh~ 433 (536)
T PLN02792 368 DTPLKLADHFKIK-GVFKVGSIPDKPRRGGG----------MRLDTSVMGAHHNAFLEIIFQNRE---KIVQSYHLDGYN 433 (536)
T ss_pred CCchhhhhhhccC-CCcCcccCccCCcccCC----------CccCceEEEcCCCCEEEEEEECCC---CCCCCeeeCCCc
Confidence 9999988776665 666543 6666664322 123577899999999999999954 368999999999
Q ss_pred eEEEEecCCCCCCCCCCCCCCCCCCCccceEEecCCcEEEEEEEcCCCeeEEEeecchhhhhccceEEEEEeCCCCCCCC
Q 040938 397 FFVVGQGFGNFDPSKDPAKFNLVDPAERNTVGVPSGGWVAIRFLADNPGAWFMHCHLEVHTSWGLKMAWIVNDGKGPKQK 476 (487)
Q Consensus 397 f~Vl~~g~g~~~~~~~~~~~n~~~p~~rDtv~v~~~~~~~irf~~dnpG~w~~HCHi~~H~~~GM~~~~~V~~~~~~~~~ 476 (487)
||||++|.|.|++. .+..+|+.||++||||.|+++||++|||++||||+|+||||+..|+..||..+|.|+++.+..++
T Consensus 434 F~Vvg~G~G~~~~~-~~~~~Nl~nP~~RdTv~v~~~gw~aIRf~aDNPGvW~~HCh~~~h~~~Gm~~~~~v~~~~~~~~~ 512 (536)
T PLN02792 434 FWVVGINKGIWSRA-SRREYNLKDAISRSTTQVYPESWTAVYVALDNVGMWNLRSQFWARQYLGQQFYLRVYSPTHSLKD 512 (536)
T ss_pred eEEEeecCCCCCcc-cccccCcCCCCccceEEECCCCEEEEEEEeeCCEEEeeeEcchhccccceEEEEEEccCCCcccc
Confidence 99999999999874 45689999999999999999999999999999999999999999999999999999999988999
Q ss_pred CCCCCCCCCCC
Q 040938 477 LPPPPSDLPKC 487 (487)
Q Consensus 477 ~~~~p~~~~~c 487 (487)
+++||.++++|
T Consensus 513 ~~~pP~~~~~C 523 (536)
T PLN02792 513 EYPLPKNALLC 523 (536)
T ss_pred ccCCCcccCcc
Confidence 99999999999
No 4
>PLN02991 oxidoreductase
Probab=100.00 E-value=6.7e-91 Score=725.62 Aligned_cols=433 Identities=26% Similarity=0.448 Sum_probs=341.3
Q ss_pred CccccCCCCCCCCCCCcccccCCCCCeEEEEEEeCCCccceeecccccccc-ccceeeEEEeCCCCCCCCCCCCCcceeE
Q 040938 1 HGVRQLRSGWADGPAYITQCPIQTGQSYVYNFTVTGQRGTLFWHAHISWLR-ATLYGPIVILPKRHASYPFPQPFKEVPM 79 (487)
Q Consensus 1 HGl~~~~~~~~DGv~~vtq~~I~PG~~~~Y~f~~~~~~Gt~wYH~H~~~~~-~Gl~G~liV~~~~~~~~~~~~~d~e~~l 79 (487)
|||+|++++|||||++ |||||+||++|+|+|++++|+||||||||.+.|+ +||+|+|||+++++.+.|+..+++|++|
T Consensus 86 HGi~q~~~~~~DGv~~-tQcpI~PG~sftY~F~~~~q~GT~WYHsH~~~q~~~Gl~G~lIV~~~~~~~~p~~~~d~d~~i 164 (543)
T PLN02991 86 SGIRNWRNSYQDGVYG-TTCPIPPGKNYTYALQVKDQIGSFYYFPSLGFHKAAGGFGAIRISSRPLIPVPFPAPADDYTV 164 (543)
T ss_pred CCcccCCCccccCCCC-CCCccCCCCcEEEEEEeCCCCcceEEecCcchhhhCCCeeeEEEeCCcccCcccccccceeEE
Confidence 9999999999999998 9999999999999999877999999999999888 7999999999987666666677899999
Q ss_pred EeeeccccChHHHHHHHhhcCCCCCCCCeEEEcCcCCCCCCCCCCceeeEEEeCCCEEEEEEEecCCCceEEEEEcCceE
Q 040938 80 IFGEWWKADTEKIINQALQTGAAPNISDAFTINGLPGPLYNCSAKDTFKLKVKPGKTYLLRMINAALNDELFFSIANHTL 159 (487)
Q Consensus 80 ~l~d~~~~~~~~~~~~~~~~g~~~~~~d~~lvNG~~~~~~~~~~~~~~~~~v~~G~~~rlR~iN~~~~~~~~~~i~~h~~ 159 (487)
+|+||++++...+... ...+..++++|++|||||.. .++++|++||+|||||||+|..+.+.|+|+||+|
T Consensus 165 ~l~DW~~~~~~~~~~~-~~~~~~~~~~d~~liNG~~~---------~~~~~v~~G~~yRlRiINa~~~~~~~~~idgH~~ 234 (543)
T PLN02991 165 LIGDWYKTNHKDLRAQ-LDNGGKLPLPDGILINGRGS---------GATLNIEPGKTYRLRISNVGLQNSLNFRIQNHTM 234 (543)
T ss_pred EecceecCCHHHHHHH-hhcCCCCCCCCEEEEccCCC---------CceEEECCCCEEEEEEEeccCCeeEEEEECCCEE
Confidence 9999999886665433 33454556889999999963 3689999999999999999999999999999999
Q ss_pred EEEEecCcccceeEeeEEEeCCCceEEEEEEecCCCCCcceEEEeccCCCCCCCCCCcceEEEEEEecCCCCCCCCCCCC
Q 040938 160 TVVETDAVYVKPIKTKVVLITPGQTTNVLLKAKHKSPNASFLIAARPYATGPASFDNTTTAGVLEYEQPNNANKNKKLPL 239 (487)
Q Consensus 160 ~via~DG~~v~P~~~~~l~l~pG~R~dv~v~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~~~~ 239 (487)
+|||+||.+++|..++.|.|++||||||+|+++++. ++||||+...... ......|||+|++++.... ..
T Consensus 235 tVIa~DG~~~~p~~~~~l~i~~GQRydvlv~a~~~~--~~y~i~~~~~~~~----~~~~~~AIl~Y~g~~~~~~----~~ 304 (543)
T PLN02991 235 KLVEVEGTHTIQTPFSSLDVHVGQSYSVLITADQPA--KDYYIVVSSRFTS----KILITTGVLHYSNSAGPVS----GP 304 (543)
T ss_pred EEEEeCCccccceeeeEEEEcCCcEEEEEEECCCCC--CcEEEEEeeccCC----CCcceEEEEEeCCCCCCCC----CC
Confidence 999999999999999999999999999999999987 8999999863221 2346789999988643111 01
Q ss_pred CCCCCCCCCCch--hhhhhhhhhhccccCCCCCCCCCCc--------ccEEEEEecccccCCCCCCcccCCCCCceeeee
Q 040938 240 LKPALPKFNDTN--FAMQFSKKIRSLATAKFPAKVPRKV--------DRLFFFTVGLGLSPCPQNQTCQGPNNTMLAASI 309 (487)
Q Consensus 240 ~~p~~p~~~~~~--~~~~~~~~~~~~~~~~~p~~~p~~~--------d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 309 (487)
. |..|...... ...+....+.+.. +.+.|... ++.+.+...+. .+ + .++.|++
T Consensus 305 ~-p~~p~~~~~~~~~~~~~~~~l~p~~----~~~~p~~~~~~~~~~~~~~~~~~~~~~--------~~---~-g~~~~~i 367 (543)
T PLN02991 305 I-PDGPIQLSWSFDQARAIKTNLTASG----PRPNPQGSYHYGKINITRTIRLANSAG--------NI---E-GKQRYAV 367 (543)
T ss_pred C-CCCCccccccccchhhhhhcccCCC----CCCCCCccccccccccceeEEEeeccc--------cc---C-ceEEEEE
Confidence 1 2221111000 0111112222211 11222221 22222221111 11 2 2568999
Q ss_pred cceeccCCChhhhhhhhcCcccCcccCC-CCCCCCccccCCCCCCCCcccCCCceEEEecCCCEEEEEEeeCCCCCCCCC
Q 040938 310 NNVSFAQPNIALLQAHFFNKSKGVYTTD-FPANPPFKFNYTGTPPSNIMVSSGTRAVALPFNASVEVVMQDTSIIGAESH 388 (487)
Q Consensus 310 N~~~~~~p~~~~l~~~~~~~~~~~~~~~-~~~~~p~~~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~~l~n~~~~~~~~H 388 (487)
|+.+|..|+.|+|.+++.+++ |.|..+ +++.+|.. .....+.++.++.|++|||+|+|.. ...|
T Consensus 368 N~~s~~~p~~p~L~~~~~~~~-g~~~~~~~~~~~~~~-----------~~~~~~~v~~~~~~~~VeiViqn~~---~~~H 432 (543)
T PLN02991 368 NSASFYPADTPLKLADYFKIA-GVYNPGSIPDQPTNG-----------AIFPVTSVMQTDYKAFVEIVFENWE---DIVQ 432 (543)
T ss_pred CCCccCCCCCChhhhhhhccc-CccccccccccCCCC-----------ccccCCcEEEcCCCCEEEEEEeCCC---CCCC
Confidence 999999999998887776655 666554 44433310 0122466889999999999999964 3689
Q ss_pred CeeecCCceEEEEecCCCCCCCCCCCCCCCCCCCccceEEecCCcEEEEEEEcCCCeeEEEeecchhhhhccceEEEEEe
Q 040938 389 PLHLHGFNFFVVGQGFGNFDPSKDPAKFNLVDPAERNTVGVPSGGWVAIRFLADNPGAWFMHCHLEVHTSWGLKMAWIVN 468 (487)
Q Consensus 389 P~HlHg~~f~Vl~~g~g~~~~~~~~~~~n~~~p~~rDtv~v~~~~~~~irf~~dnpG~w~~HCHi~~H~~~GM~~~~~V~ 468 (487)
|||||||+||||++|.|.|++. ....+|+.||++|||+.|+++||++|||++||||.|+|||||..|+..||..++.|.
T Consensus 433 P~HLHGh~F~Vvg~G~G~f~~~-~~~~~Nl~nP~rRDTv~vp~~Gw~vIRF~aDNPG~W~~HCHi~~h~~~gm~~~~~v~ 511 (543)
T PLN02991 433 TWHLDGYSFYVVGMELGKWSAA-SRKVYNLNDAVSRCTVQVYPRSWTAIYVSLDNVGMWNLRSELWERQYLGQQFYMRVY 511 (543)
T ss_pred CeeeCCcceEEEEeCCCCCCcc-cccccCCCCCCcccEEEECCCCEEEEEEECCCCEEeeeeeCccccccccEEEEEEec
Confidence 9999999999999999999876 456799999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCCCCC
Q 040938 469 DGKGPKQKLPPPPSDLPKC 487 (487)
Q Consensus 469 ~~~~~~~~~~~~p~~~~~c 487 (487)
++.+..+.+++||.++++|
T Consensus 512 ~~~~~~~~~~~~P~~~~~C 530 (543)
T PLN02991 512 TTSTSLRDEYLIPKNALLC 530 (543)
T ss_pred CCCCccccccCCCcccCcc
Confidence 9999999999999999999
No 5
>PLN02835 oxidoreductase
Probab=100.00 E-value=2.7e-90 Score=724.57 Aligned_cols=436 Identities=25% Similarity=0.412 Sum_probs=335.5
Q ss_pred CccccCCCCCCCCCCCcccccCCCCCeEEEEEEeCCCccceeecccccccc-ccceeeEEEeCCCCCCCCCCCCCcceeE
Q 040938 1 HGVRQLRSGWADGPAYITQCPIQTGQSYVYNFTVTGQRGTLFWHAHISWLR-ATLYGPIVILPKRHASYPFPQPFKEVPM 79 (487)
Q Consensus 1 HGl~~~~~~~~DGv~~vtq~~I~PG~~~~Y~f~~~~~~Gt~wYH~H~~~~~-~Gl~G~liV~~~~~~~~~~~~~d~e~~l 79 (487)
|||+|++++|||||++ |||||+||++|+|+|++++|+||||||||...|+ +||+|+|||++++..+++++.+|+|++|
T Consensus 87 HGl~~~~~~~~DGv~~-tQ~pI~PG~sf~Y~F~~~~q~GT~WYHsH~~~q~~~Gl~G~lIV~~~~~~~~p~~~~d~e~~l 165 (539)
T PLN02835 87 NGIKQRKNSWQDGVLG-TNCPIPPNSNYTYKFQTKDQIGTFTYFPSTLFHKAAGGFGAINVYERPRIPIPFPLPDGDFTL 165 (539)
T ss_pred CCcccCCCCCCCCCcc-CcCCCCCCCcEEEEEEECCCCEeEEEEeCccchhcCcccceeEEeCCCCCCcCCCCCCceEEE
Confidence 9999999999999999 9999999999999999867999999999999998 7999999998765555666678999999
Q ss_pred EeeeccccChHHHHHHHhhcCCCCCCCCeEEEcCcCCCCCCCCCCceeeEEEeCCCEEEEEEEecCCCceEEEEEcCceE
Q 040938 80 IFGEWWKADTEKIINQALQTGAAPNISDAFTINGLPGPLYNCSAKDTFKLKVKPGKTYLLRMINAALNDELFFSIANHTL 159 (487)
Q Consensus 80 ~l~d~~~~~~~~~~~~~~~~g~~~~~~d~~lvNG~~~~~~~~~~~~~~~~~v~~G~~~rlR~iN~~~~~~~~~~i~~h~~ 159 (487)
+|+||++++...+... ...|.....++++||||+.. +.++|++||+|||||||+|..+.+.|+|+||+|
T Consensus 166 ~l~Dw~~~~~~~~~~~-~~~g~~~~~~d~~liNG~~~----------~~~~v~~G~~yRlRliNa~~~~~~~f~i~gH~~ 234 (539)
T PLN02835 166 LVGDWYKTSHKTLQQR-LDSGKVLPFPDGVLINGQTQ----------STFSGDQGKTYMFRISNVGLSTSLNFRIQGHTM 234 (539)
T ss_pred EeeccccCCHHHHHHH-hhcCCCCCCCceEEEccccC----------ceEEECCCCEEEEEEEEcCCCccEEEEECCCEE
Confidence 9999999987665333 33555556789999999973 679999999999999999999999999999999
Q ss_pred EEEEecCcccceeEeeEEEeCCCceEEEEEEecCCCCCcceEEEeccCCCCCCCCCCcceEEEEEEecCCCCCCCCCCCC
Q 040938 160 TVVETDAVYVKPIKTKVVLITPGQTTNVLLKAKHKSPNASFLIAARPYATGPASFDNTTTAGVLEYEQPNNANKNKKLPL 239 (487)
Q Consensus 160 ~via~DG~~v~P~~~~~l~l~pG~R~dv~v~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~~~~ 239 (487)
+|||+||++++|..++.|.|++||||||+|++++.+ |+|||++.....+ ......|+|+|+++.... .+.
T Consensus 235 ~VI~~DG~~v~p~~~~~l~i~~GqRydvlv~~~~~~--g~y~i~a~~~~~~----~~~~~~ail~Y~~~~~~~----~~~ 304 (539)
T PLN02835 235 KLVEVEGSHTIQNIYDSLDVHVGQSVAVLVTLNQSP--KDYYIVASTRFTR----QILTATAVLHYSNSRTPA----SGP 304 (539)
T ss_pred EEEEECCccCCCceeeEEEECcCceEEEEEEcCCCC--CcEEEEEEccccC----CCcceEEEEEECCCCCCC----CCC
Confidence 999999999999999999999999999999999876 8999998642221 234688999998753211 111
Q ss_pred CCCCCCCC---CCchhhhhhhhhhhccccCCCCCC---C-CCCcccEEEEEecccccCCCCCCcccCCCCCceeeeecce
Q 040938 240 LKPALPKF---NDTNFAMQFSKKIRSLATAKFPAK---V-PRKVDRLFFFTVGLGLSPCPQNQTCQGPNNTMLAASINNV 312 (487)
Q Consensus 240 ~~p~~p~~---~~~~~~~~~~~~~~~~~~~~~p~~---~-p~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iN~~ 312 (487)
+ |..|.. .+......+...+.+....+.+.. . ....++++.+..... .+ + +...|++|++
T Consensus 305 ~-p~~p~~~~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~--------~~---~-g~~~w~iN~~ 371 (539)
T PLN02835 305 L-PALPSGELHWSMRQARTYRWNLTASAARPNPQGSFHYGKITPTKTIVLANSAP--------LI---N-GKQRYAVNGV 371 (539)
T ss_pred C-CCCCccccccccchhhccccccCccccCCCCCccccccccCCCceEEEecccc--------cc---C-CeEEEEECCc
Confidence 2 222211 011000010001111111110000 0 011233333322111 00 2 2467999999
Q ss_pred eccCCChhhhhhhhcCcccCcccCCC-CCCCCccccCCCCCCCCcccCCCceEEEecCCCEEEEEEeeCCCCCCCCCCee
Q 040938 313 SFAQPNIALLQAHFFNKSKGVYTTDF-PANPPFKFNYTGTPPSNIMVSSGTRAVALPFNASVEVVMQDTSIIGAESHPLH 391 (487)
Q Consensus 313 ~~~~p~~~~l~~~~~~~~~~~~~~~~-~~~~p~~~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~~l~n~~~~~~~~HP~H 391 (487)
+|..|+.|+|.+.+.+.+ +.++.+. ...++ +...+.++.++.++.|++|+|+|+|.. ...||||
T Consensus 372 s~~~p~~P~L~~~~~~~~-~~~~~~~~~~~~~-----------~~~~~~~t~~~~~~~~~~Veivi~N~~---~~~HP~H 436 (539)
T PLN02835 372 SYVNSDTPLKLADYFGIP-GVFSVNSIQSLPS-----------GGPAFVATSVMQTSLHDFLEVVFQNNE---KTMQSWH 436 (539)
T ss_pred ccCCCCCChhhhhhhcCC-CccccCccccCCC-----------CCccccCCeEEEcCCCCEEEEEEECCC---CCCCCCC
Confidence 999888888776665443 4444321 11111 111234578899999999999999964 4689999
Q ss_pred ecCCceEEEEecCCCCCCCCCCCCCCCCCCCccceEEecCCcEEEEEEEcCCCeeEEEeecchhhhhccceEEEEEeCCC
Q 040938 392 LHGFNFFVVGQGFGNFDPSKDPAKFNLVDPAERNTVGVPSGGWVAIRFLADNPGAWFMHCHLEVHTSWGLKMAWIVNDGK 471 (487)
Q Consensus 392 lHg~~f~Vl~~g~g~~~~~~~~~~~n~~~p~~rDtv~v~~~~~~~irf~~dnpG~w~~HCHi~~H~~~GM~~~~~V~~~~ 471 (487)
||||+||||++|.|.|+... ...+|+.+|++|||+.|+++||++|||++||||.|+|||||++|+..||+++|+|+++.
T Consensus 437 LHGh~F~Vlg~G~g~~~~~~-~~~~nl~nP~~RDTv~vp~~gw~~IrF~aDNPG~Wl~HCHi~~H~~~Gm~~~~~V~~~~ 515 (539)
T PLN02835 437 LDGYDFWVVGYGSGQWTPAK-RSLYNLVDALTRHTAQVYPKSWTTILVSLDNQGMWNMRSAIWERQYLGQQFYLRVWNQV 515 (539)
T ss_pred CCCccEEEEeccCCCCCccc-ccccCCCCCCccceEEeCCCCEEEEEEECcCCEEeeeeecchhhhhcccEEEEEEccCC
Confidence 99999999999999988653 45679999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCC
Q 040938 472 GPKQKLPPPPSDLPKC 487 (487)
Q Consensus 472 ~~~~~~~~~p~~~~~c 487 (487)
+..+.+++||.++|+|
T Consensus 516 ~~~~~~~~~P~~~~~C 531 (539)
T PLN02835 516 HSLANEYDIPDNALLC 531 (539)
T ss_pred CccccccCCCcccccc
Confidence 8899999999999999
No 6
>PLN02354 copper ion binding / oxidoreductase
Probab=100.00 E-value=4.4e-90 Score=723.91 Aligned_cols=446 Identities=25% Similarity=0.429 Sum_probs=342.4
Q ss_pred CccccCCCCCCCCCCCcccccCCCCCeEEEEEEeCCCccceeecccccccc-ccceeeEEEeCCCCCCCCCCCCCcceeE
Q 040938 1 HGVRQLRSGWADGPAYITQCPIQTGQSYVYNFTVTGQRGTLFWHAHISWLR-ATLYGPIVILPKRHASYPFPQPFKEVPM 79 (487)
Q Consensus 1 HGl~~~~~~~~DGv~~vtq~~I~PG~~~~Y~f~~~~~~Gt~wYH~H~~~~~-~Gl~G~liV~~~~~~~~~~~~~d~e~~l 79 (487)
|||+|++++||||||+ |||||+||++|+|+|++.+|+||||||||...|+ +||+|+|||+++.+.+.+++.+++|++|
T Consensus 85 HGi~q~~~~~~DGv~~-TQcpI~PG~sf~Y~F~~~~q~GT~WYHsH~~~Q~~~Gl~G~lII~~~~~~~~p~~~~d~e~~l 163 (552)
T PLN02354 85 SGIQQRKNSWQDGVPG-TNCPIPPGTNFTYHFQPKDQIGSYFYYPSTGMHRAAGGFGGLRVNSRLLIPVPYADPEDDYTV 163 (552)
T ss_pred ccccCCCCcccCCCcC-CcCCCCCCCcEEEEEEeCCCCcceEEecCccceecCCccceEEEcCCcCCCCCCCCcCceEEE
Confidence 9999999999999999 9999999999999999867999999999999998 8999999999987666677677899999
Q ss_pred EeeeccccChHHHHHHHhhcCCCCCCCCeEEEcCcCCCCCCCCCCceeeEEEeCCCEEEEEEEecCCCceEEEEEcCceE
Q 040938 80 IFGEWWKADTEKIINQALQTGAAPNISDAFTINGLPGPLYNCSAKDTFKLKVKPGKTYLLRMINAALNDELFFSIANHTL 159 (487)
Q Consensus 80 ~l~d~~~~~~~~~~~~~~~~g~~~~~~d~~lvNG~~~~~~~~~~~~~~~~~v~~G~~~rlR~iN~~~~~~~~~~i~~h~~ 159 (487)
+|+||+++....+.. ....+..+..++++||||+....+. ...+.++|++||+|||||||+|....+.|+|+||+|
T Consensus 164 ~l~Dw~~~~~~~~~~-~~~~g~~~~~~d~~liNG~~~~~~~---~~~~~~~v~~Gk~yRlRiINa~~~~~~~f~IdgH~~ 239 (552)
T PLN02354 164 LIGDWYTKSHTALKK-FLDSGRTLGRPDGVLINGKSGKGDG---KDEPLFTMKPGKTYRYRICNVGLKSSLNFRIQGHKM 239 (552)
T ss_pred EeeeeccCCHHHHHH-HHhcCCCCCCCCeEEEeCCcCCCCC---CCceEEEECCCCEEEEEEEecCCCceEEEEECCceE
Confidence 999999988666433 3344544456899999999653321 235789999999999999999999999999999999
Q ss_pred EEEEecCcccceeEeeEEEeCCCceEEEEEEecCCCCCcceEEEeccCCCCCCCCCCcceEEEEEEecCCCCCCCCCCCC
Q 040938 160 TVVETDAVYVKPIKTKVVLITPGQTTNVLLKAKHKSPNASFLIAARPYATGPASFDNTTTAGVLEYEQPNNANKNKKLPL 239 (487)
Q Consensus 160 ~via~DG~~v~P~~~~~l~l~pG~R~dv~v~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~~~~ 239 (487)
+|||+||++++|..++.|.|++||||||+|++++++ |+|||++...... ......|+|+|.++.... .+.
T Consensus 240 tVIa~DG~~v~p~~~~~l~i~~GqRydVlv~a~~~~--g~Y~i~a~~~~~~----~~~~~~ail~Y~g~~~~~----~~~ 309 (552)
T PLN02354 240 KLVEMEGSHVLQNDYDSLDVHVGQCFSVLVTANQAP--KDYYMVASTRFLK----KVLTTTGIIRYEGGKGPA----SPE 309 (552)
T ss_pred EEEEeCCcccCCcceeEEEEccCceEEEEEECCCCC--CcEEEEEeccccC----CCccEEEEEEECCCCCCC----CCC
Confidence 999999999999999999999999999999999876 8999998742221 235688999998764311 111
Q ss_pred CCCCCCC-CC-CchhhhhhhhhhhccccCCCCCCC----CCCcccEEEEEecccccCCCCCCcccCCCCCceeeeeccee
Q 040938 240 LKPALPK-FN-DTNFAMQFSKKIRSLATAKFPAKV----PRKVDRLFFFTVGLGLSPCPQNQTCQGPNNTMLAASINNVS 313 (487)
Q Consensus 240 ~~p~~p~-~~-~~~~~~~~~~~~~~~~~~~~p~~~----p~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iN~~~ 313 (487)
. |..+. +. ......++...+.+....+.+... ....++++.+...+. .+ + ....|++||++
T Consensus 310 ~-p~~~~~~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~--------~~---~-g~~~~~iNn~s 376 (552)
T PLN02354 310 L-PEAPVGWAWSLNQFRSFRWNLTASAARPNPQGSYHYGKINITRTIKLVNSAS--------KV---D-GKLRYALNGVS 376 (552)
T ss_pred C-CCCCcccccchhhhhhhhhcccccccCCCCCCccccccccccceEEEecccc--------cC---C-ceEEEEECCcc
Confidence 2 22111 00 000001111122211111111000 011233333332111 01 2 25679999999
Q ss_pred ccCCChhhhhhhhcCcccCcccCC-CCCCCCccccCCCCCCCCcccCCCceEEEecCCCEEEEEEeeCCCCCCCCCCeee
Q 040938 314 FAQPNIALLQAHFFNKSKGVYTTD-FPANPPFKFNYTGTPPSNIMVSSGTRAVALPFNASVEVVMQDTSIIGAESHPLHL 392 (487)
Q Consensus 314 ~~~p~~~~l~~~~~~~~~~~~~~~-~~~~~p~~~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~~l~n~~~~~~~~HP~Hl 392 (487)
|..|+.|+|.+.+.+++.|.++.+ ++..+|..++ ..+.++.++.++.|++|||+|+|.. ...|||||
T Consensus 377 ~~~p~~P~L~~~~~~~~~g~~~~~~~~~~pp~~~~---------~~~~~~~v~~~~~~~~VeiVi~n~~---~~~HP~HL 444 (552)
T PLN02354 377 HVDPETPLKLAEYFGVADKVFKYDTIKDNPPAKIT---------KIKIQPNVLNITFRTFVEIIFENHE---KSMQSWHL 444 (552)
T ss_pred CCCCCCChHHhhhhcccCCccccCccccCCccccC---------ccccCCeeEEcCCCCEEEEEEeCCC---CCCCCCcC
Confidence 999999988877655544555433 3344443221 0234567899999999999999964 46899999
Q ss_pred cCCceEEEEecCCCCCCCCCCCCCCCCCCCccceEEecCCcEEEEEEEcCCCeeEEEeecchhhhhccceEEEEEeCCCC
Q 040938 393 HGFNFFVVGQGFGNFDPSKDPAKFNLVDPAERNTVGVPSGGWVAIRFLADNPGAWFMHCHLEVHTSWGLKMAWIVNDGKG 472 (487)
Q Consensus 393 Hg~~f~Vl~~g~g~~~~~~~~~~~n~~~p~~rDtv~v~~~~~~~irf~~dnpG~w~~HCHi~~H~~~GM~~~~~V~~~~~ 472 (487)
|||+||||++|.|.|++.. ...+|+.||++|||+.|+++||++|||++||||+|+|||||..|+..||...|.|.++.+
T Consensus 445 HGh~F~Vlg~G~G~~~~~~-~~~~nl~nP~rRDTv~vp~~Gw~vIRF~aDNPGvW~~HCHi~~H~~~g~~l~~~v~~~~~ 523 (552)
T PLN02354 445 DGYSFFAVAVEPGTWTPEK-RKNYNLLDAVSRHTVQVYPKSWAAILLTFDNAGMWNIRSENWERRYLGQQLYASVLSPER 523 (552)
T ss_pred CCccEEEEeecCCCCCccc-cccCCcCCCCccceEEeCCCCeEEEEEEecCCeEEeeeccccccccccceEEEEEeCCcc
Confidence 9999999999999998753 567899999999999999999999999999999999999999999999999999998888
Q ss_pred CCCCCCCCCCCCCCC
Q 040938 473 PKQKLPPPPSDLPKC 487 (487)
Q Consensus 473 ~~~~~~~~p~~~~~c 487 (487)
..++++++|++++.|
T Consensus 524 ~~~~~~~~P~~~~~C 538 (552)
T PLN02354 524 SLRDEYNMPENALLC 538 (552)
T ss_pred ccCcCCCCCcccccc
Confidence 888888899999999
No 7
>PLN02168 copper ion binding / pectinesterase
Probab=100.00 E-value=8.4e-90 Score=718.73 Aligned_cols=440 Identities=28% Similarity=0.452 Sum_probs=332.3
Q ss_pred CccccCCCCCCCCCCCcccccCCCCCeEEEEEEeCCCccceeecccccccc-ccceeeEEEeCCCCCCCCCCCCCcceeE
Q 040938 1 HGVRQLRSGWADGPAYITQCPIQTGQSYVYNFTVTGQRGTLFWHAHISWLR-ATLYGPIVILPKRHASYPFPQPFKEVPM 79 (487)
Q Consensus 1 HGl~~~~~~~~DGv~~vtq~~I~PG~~~~Y~f~~~~~~Gt~wYH~H~~~~~-~Gl~G~liV~~~~~~~~~~~~~d~e~~l 79 (487)
|||+|++++||||||+ |||||+||++|+|+|++++|+||||||||.+.|+ +||+|+|||+++++++.|++.++.|++|
T Consensus 84 HGl~~~~~~~~DGv~g-tQcpI~PG~sftY~F~~~~q~GT~WYHsH~~~Q~~~GL~G~lII~~~~~~~~p~~~~d~e~~l 162 (545)
T PLN02168 84 NGLQLRKNSWQDGVRG-TNCPILPGTNWTYRFQVKDQIGSYFYFPSLLLQKAAGGYGAIRIYNPELVPVPFPKPDEEYDI 162 (545)
T ss_pred CCccCCCCCCcCCCCC-CcCCCCCCCcEEEEEEeCCCCceEEEecChhhhhhCcceeEEEEcCCcccCcCcCcccceeeE
Confidence 9999999999999999 9999999999999999867899999999999998 8999999999987766677778999999
Q ss_pred EeeeccccChHHHHHHHhhcCCCCCCCCeEEEcCcCCCCCCCCCCceeeEEEeCCCEEEEEEEecCCCceEEEEEcCceE
Q 040938 80 IFGEWWKADTEKIINQALQTGAAPNISDAFTINGLPGPLYNCSAKDTFKLKVKPGKTYLLRMINAALNDELFFSIANHTL 159 (487)
Q Consensus 80 ~l~d~~~~~~~~~~~~~~~~g~~~~~~d~~lvNG~~~~~~~~~~~~~~~~~v~~G~~~rlR~iN~~~~~~~~~~i~~h~~ 159 (487)
+|+||++.+...+.. ....+.....+|++||||+.. ..++++|++||+|||||||+|+.+.+.|+|+||+|
T Consensus 163 ~l~Dw~~~~~~~~~~-~~~~g~~~~~~d~~liNG~~~--------~~~~~~v~~G~~yRlRiiNa~~~~~~~~~IdgH~~ 233 (545)
T PLN02168 163 LIGDWFYADHTVMRA-SLDNGHSLPNPDGILFNGRGP--------EETFFAFEPGKTYRLRISNVGLKTCLNFRIQDHDM 233 (545)
T ss_pred EEEecCCCCHHHHHh-hhhcCCCCCCCCEEEEeccCC--------CcceEEeCCCCEEEEEEEeccCCceEEEEECCcEE
Confidence 999999987655432 233343345789999999963 13689999999999999999999999999999999
Q ss_pred EEEEecCcccceeEeeEEEeCCCceEEEEEEecCCCCC--cceEEEeccCCCCCCCCCCcceEEEEEEecCCCCCCCCCC
Q 040938 160 TVVETDAVYVKPIKTKVVLITPGQTTNVLLKAKHKSPN--ASFLIAARPYATGPASFDNTTTAGVLEYEQPNNANKNKKL 237 (487)
Q Consensus 160 ~via~DG~~v~P~~~~~l~l~pG~R~dv~v~~~~~~~~--g~~~i~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~~ 237 (487)
+|||+||.+++|..++.|.|++||||||+|+++++..| ++|||++.....+ ....+.|+|+|++++.... .
T Consensus 234 tVIa~DG~~v~p~~~~~l~i~~GqRydvlv~a~~~~~g~~~~Y~i~a~~~~~~----~~~~~~ail~Y~~~~~~~~---~ 306 (545)
T PLN02168 234 LLVETEGTYVQKRVYSSLDIHVGQSYSVLVTAKTDPVGIYRSYYIVATARFTD----AYLGGVALIRYPNSPLDPV---G 306 (545)
T ss_pred EEEEECCeECCCceeeEEEEcCCceEEEEEEcCCCCCCCcceEEEEEEecccC----CCcceEEEEEECCCCCCCC---C
Confidence 99999999999999999999999999999999876444 4899999863322 2356789999987543211 1
Q ss_pred CCCCCCCCCCCCchhhhhhhhhhhccccCCCCCCCCCC--------cccEEEEEecccccCCCCCCcccCCCCCceeeee
Q 040938 238 PLLKPALPKFNDTNFAMQFSKKIRSLATAKFPAKVPRK--------VDRLFFFTVGLGLSPCPQNQTCQGPNNTMLAASI 309 (487)
Q Consensus 238 ~~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~p~~~p~~--------~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 309 (487)
++ +..|...+.....++...++....+..+...|.. .+.++.+.... . . ......|++
T Consensus 307 -p~-p~~p~~~~~~~~~~~~~~~~~~l~p~~~~~~p~~~~~~~~~~~~~~~~~~~~~--~------~----~~g~~~~~i 372 (545)
T PLN02168 307 -PL-PLAPALHDYFSSVEQALSIRMDLNVGAARSNPQGSYHYGRINVTRTIILHNDV--M------L----SSGKLRYTI 372 (545)
T ss_pred -CC-CCCCcccccccccchhhhhhhcCCCCCCCCCCcccccccccccceeEEecccc--c------c----cCceEEEEE
Confidence 12 3333333332222221222211111111112211 12222221100 0 0 112568999
Q ss_pred cceeccCCChhhhhhhhcCcccCcccC-CCCCCCCccccCCCCCCCCcccCCCceEEEecCCCEEEEEEeeCCCCCCCCC
Q 040938 310 NNVSFAQPNIALLQAHFFNKSKGVYTT-DFPANPPFKFNYTGTPPSNIMVSSGTRAVALPFNASVEVVMQDTSIIGAESH 388 (487)
Q Consensus 310 N~~~~~~p~~~~l~~~~~~~~~~~~~~-~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~~l~n~~~~~~~~H 388 (487)
||.+|..|+.|+|.+.+..++ +.+.. +++..+|.. ....++.++.++.|++|+|+|+|.. ...|
T Consensus 373 N~~s~~~p~~P~l~~~~~~~~-~~~~~~~~~~~p~~~-----------~~~~~~~v~~~~~~~~VeiViqn~~---~~~H 437 (545)
T PLN02168 373 NGVSFVYPGTPLKLVDHFQLN-DTIIPGMFPVYPSNK-----------TPTLGTSVVDIHYKDFYHIVFQNPL---FSLE 437 (545)
T ss_pred CCCccCCCCCchhhhhhcccc-cccccCCCccCCCcC-----------ccccCceEEEecCCCEEEEEEeCCC---CCCC
Confidence 999999999888766654432 22222 233333310 0112467889999999999999964 4689
Q ss_pred CeeecCCceEEEEecCCCCCCCCCCCCCCCCCCCccceEEecCCcEEEEEEEcCCCeeEEEeecchhhhhccceEEEEEe
Q 040938 389 PLHLHGFNFFVVGQGFGNFDPSKDPAKFNLVDPAERNTVGVPSGGWVAIRFLADNPGAWFMHCHLEVHTSWGLKMAWIVN 468 (487)
Q Consensus 389 P~HlHg~~f~Vl~~g~g~~~~~~~~~~~n~~~p~~rDtv~v~~~~~~~irf~~dnpG~w~~HCHi~~H~~~GM~~~~~V~ 468 (487)
|||||||+||||++|.|.|++.. ...+|+.||++|||+.|+++||++|||++||||.|+|||||..|+..||...+.|+
T Consensus 438 P~HLHGh~F~Vvg~g~g~~~~~~-~~~~Nl~nP~rRDTv~vp~~Gw~vIRF~aDNPG~Wl~HCHi~~~~h~g~gl~~~v~ 516 (545)
T PLN02168 438 SYHIDGYNFFVVGYGFGAWSESK-KAGYNLVDAVSRSTVQVYPYSWTAILIAMDNQGMWNVRSQKAEQWYLGQELYMRVK 516 (545)
T ss_pred CeeeCCCceEEEECCCCCCCccc-cccCCCCCCCccceEEeCCCCEEEEEEEccCCeEEeeeecCcccceecCcEEEEEE
Confidence 99999999999999999998753 45789999999999999999999999999999999999999888888888888886
Q ss_pred CCCC-----C-CCCCCCCCCCCCCC
Q 040938 469 DGKG-----P-KQKLPPPPSDLPKC 487 (487)
Q Consensus 469 ~~~~-----~-~~~~~~~p~~~~~c 487 (487)
+++. . .+.+++||+++++|
T Consensus 517 ~~~~e~p~~~~~~~~~~~P~~~~~c 541 (545)
T PLN02168 517 GEGEEDPSTIPVRDENPIPGNVIRC 541 (545)
T ss_pred cccccCccccccccccCCChhhccc
Confidence 4433 2 56789999999999
No 8
>KOG1263 consensus Multicopper oxidases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1.7e-89 Score=710.77 Aligned_cols=466 Identities=50% Similarity=0.880 Sum_probs=402.0
Q ss_pred CccccCCCCCCCCCCCcccccCCCCCeEEEEEEeCCCccceeecccccccc-ccceeeEEEeCCCCCCCCCCCCCcceeE
Q 040938 1 HGVRQLRSGWADGPAYITQCPIQTGQSYVYNFTVTGQRGTLFWHAHISWLR-ATLYGPIVILPKRHASYPFPQPFKEVPM 79 (487)
Q Consensus 1 HGl~~~~~~~~DGv~~vtq~~I~PG~~~~Y~f~~~~~~Gt~wYH~H~~~~~-~Gl~G~liV~~~~~~~~~~~~~d~e~~l 79 (487)
|||+|+.++|||| +++|||||+||++|||+|++++|.||||||+|...|+ +|++|+|||.++...++|++.+|+|++|
T Consensus 86 hGv~q~kn~w~DG-~~~TqCPI~Pg~~~tY~F~v~~q~GT~~yh~h~~~~Ra~G~~G~liI~~~~~~p~pf~~pd~E~~i 164 (563)
T KOG1263|consen 86 HGVRQRKNPWQDG-VYITQCPIQPGENFTYRFTVKDQIGTLWYHSHVSWQRATGVFGALIINPRPGLPVPFPKPDKEFTI 164 (563)
T ss_pred ccccccCCccccC-CccccCCcCCCCeEEEEEEeCCcceeEEEeeccccccccCceeEEEEcCCccCCCCCCCCCceeEE
Confidence 9999999999999 8999999999999999999988999999999999999 6999999999998877889889999999
Q ss_pred Eeeecccc-ChHHHHHHHhhcCCCCCCCCeEEEcCcCCCCCCCCCCceeeEEEeCCCEEEEEEEecCCCceEEEEEcCce
Q 040938 80 IFGEWWKA-DTEKIINQALQTGAAPNISDAFTINGLPGPLYNCSAKDTFKLKVKPGKTYLLRMINAALNDELFFSIANHT 158 (487)
Q Consensus 80 ~l~d~~~~-~~~~~~~~~~~~g~~~~~~d~~lvNG~~~~~~~~~~~~~~~~~v~~G~~~rlR~iN~~~~~~~~~~i~~h~ 158 (487)
+|+||+++ +...+.......+..+..+|..+|||+.+..++| .++++|++||+|||||+|+|....+.|+|++|+
T Consensus 165 ll~dW~~~~~~~~l~~~~~~~~~~p~~~D~~~iNg~~g~~~~~----~~~l~v~pGktY~lRiiN~g~~~~l~F~I~~H~ 240 (563)
T KOG1263|consen 165 LLGDWYKNLNHKNLKNFLDRTGALPNPSDGVLINGRSGFLYNC----TPTLTVEPGKTYRLRIINAGLNTSLNFSIANHQ 240 (563)
T ss_pred EeEeeccccCHHHHHHhhccCCCCCCCCCceEECCCCCcccCc----eeEEEEcCCCEEEEEEEccccccceEEEECCeE
Confidence 99999996 6666666655566666558999999999888999 689999999999999999999999999999999
Q ss_pred EEEEEecCcccceeEeeEEEeCCCceEEEEEEecCCCCCcceEEEeccCCCCCCCCCCcceEEEEEEecCCCCCCCCCCC
Q 040938 159 LTVVETDAVYVKPIKTKVVLITPGQTTNVLLKAKHKSPNASFLIAARPYATGPASFDNTTTAGVLEYEQPNNANKNKKLP 238 (487)
Q Consensus 159 ~~via~DG~~v~P~~~~~l~l~pG~R~dv~v~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~~~ 238 (487)
|+||++||.+++|..+++|.|.||||+||+|++++.+ ++|+|++..+.++.....+....++|+|.++...... ..+
T Consensus 241 ltvVe~Dg~y~~p~~~~~l~i~~GQ~~~vLvtadq~~--~~Y~i~~~~~~~~~~~~~~~t~~~~l~y~~~~~~~s~-~~~ 317 (563)
T KOG1263|consen 241 LTVVEVDGAYTKPFTTDSLDIHPGQTYSVLLTADQSP--GDYYIAASPYFDASNVPFNLTTTGILRYSGSTHPASE-KLP 317 (563)
T ss_pred EEEEEecceEEeeeeeceEEEcCCcEEEEEEeCCCCC--CcEEEEEEeeeccCCcceeeeEEEEEEEeCCcccCcc-cCc
Confidence 9999999999999999999999999999999999998 7999999986654321116789999999984322211 112
Q ss_pred CCCCCCCCCCCchhhhhhhhhhhccccCCCCCCCCCCcccEEEEEecccccCCCCCCcccCCCCCceeeeecceeccCCC
Q 040938 239 LLKPALPKFNDTNFAMQFSKKIRSLATAKFPAKVPRKVDRLFFFTVGLGLSPCPQNQTCQGPNNTMLAASINNVSFAQPN 318 (487)
Q Consensus 239 ~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~p~~~p~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iN~~~~~~p~ 318 (487)
.. +.++...+...+..+...++.+....++.++|+..++....+++.+...+.... ..+++..+++|+.||..|+
T Consensus 318 ~~-~~~~~~~~~~~s~~~~~~~r~~~~~~~~~~~P~~~~~~~~~~i~~~~~~~~~~~----~~~~~~~~siN~isf~~P~ 392 (563)
T KOG1263|consen 318 IY-PFLPPGNDTAWSTYQARSIRSLLSASFARPVPQGSYHYGLITIGLTLKLCNSDN----KNNGKLRASINNISFVTPK 392 (563)
T ss_pred cc-ccCCcccCchhhhhhhhcccccccccCcccCCCccccccceeeeccEEeccCCC----CCCcEEEEEEcceEEECCC
Confidence 22 445656666667777778888877777788898888887777776665443211 2456778999999999998
Q ss_pred hh-hhhhhhcCcccCcccCCCCCCCCccccCCCCCCCCcccCCCceEEEecCCCEEEEEEeeCCCCCCCCCCeeecCCce
Q 040938 319 IA-LLQAHFFNKSKGVYTTDFPANPPFKFNYTGTPPSNIMVSSGTRAVALPFNASVEVVMQDTSIIGAESHPLHLHGFNF 397 (487)
Q Consensus 319 ~~-~l~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~~l~n~~~~~~~~HP~HlHg~~f 397 (487)
.| +|..++...+ +.+..+++..|+..|++++ .+.++.++.++.++.||++|+|.+......||||||||.|
T Consensus 393 tp~~l~~~~~~~~-~~~~~d~p~~P~~~~~~~~-------~~~~t~v~~~~~~~~veIVlqN~~~~~~~~hp~HLHG~~F 464 (563)
T KOG1263|consen 393 TPSLLAAYFKNIP-GYFTNDFPDKPPIKFDYTG-------PTLGTSVMKLEFNSFVEIVLQNTSTGTQENHPNHLHGYNF 464 (563)
T ss_pred CchhhhhhhccCC-ccccCccCCCCccccCCcc-------ccccceEEEeecCCEEEEEEeCCccccCCCCccceeceEE
Confidence 75 6666666554 7778889888887777654 3568999999999999999999887667789999999999
Q ss_pred EEEEecCCCCCCCCCC-CCCCCCCCCccceEEecCCcEEEEEEEcCCCeeEEEeecchhhhhccceEEEEEeCCCCCCCC
Q 040938 398 FVVGQGFGNFDPSKDP-AKFNLVDPAERNTVGVPSGGWVAIRFLADNPGAWFMHCHLEVHTSWGLKMAWIVNDGKGPKQK 476 (487)
Q Consensus 398 ~Vl~~g~g~~~~~~~~-~~~n~~~p~~rDtv~v~~~~~~~irf~~dnpG~w~~HCHi~~H~~~GM~~~~~V~~~~~~~~~ 476 (487)
+||+.|.|.|++.++. ..+|+.+|+.||||.|+||||++|||.|||||.|+||||+.+|+..||...|.|.++....+.
T Consensus 465 ~Vvg~g~G~~~~~~d~~~~yNl~dp~~R~Tv~V~pggw~aIrf~adNPG~W~~HCHie~H~~~G~~~~f~V~~~~~~~~~ 544 (563)
T KOG1263|consen 465 YVVGYGFGNWDPAKDPRKKYNLVDPVSRDTVQVPPGGWTAIRFVADNPGVWLMHCHIEDHLYLGMETVFIVGNGEESLSS 544 (563)
T ss_pred EEEEecccccCcCcChhhhcccCCCcccceEEeCCCCEEEEEEEcCCCcEEEEEEecHHHHhccCeEEEEEeCCCccCCc
Confidence 9999999999995555 789999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCC
Q 040938 477 LPPPPSDLPKC 487 (487)
Q Consensus 477 ~~~~p~~~~~c 487 (487)
+.+||.+.++|
T Consensus 545 ~~~~P~~~~~c 555 (563)
T KOG1263|consen 545 EYPPPKNLPKC 555 (563)
T ss_pred CCCCCCCcccc
Confidence 99999999999
No 9
>TIGR03388 ascorbase L-ascorbate oxidase, plant type. Members of this protein family are the copper-containing enzyme L-ascorbate oxidase (EC 1.10.3.3), also called ascorbase. This family is found in flowering plants, and shows greater sequence similarity to a family of laccases (EC 1.10.3.2) from plants than to other known ascorbate oxidases.
Probab=100.00 E-value=4.8e-86 Score=697.93 Aligned_cols=454 Identities=32% Similarity=0.555 Sum_probs=332.8
Q ss_pred CccccCCCCCCCCCCCcccccCCCCCeEEEEEEeCCCccceeecccccccc-ccceeeEEEeCCCCCCCCCCCCCcceeE
Q 040938 1 HGVRQLRSGWADGPAYITQCPIQTGQSYVYNFTVTGQRGTLFWHAHISWLR-ATLYGPIVILPKRHASYPFPQPFKEVPM 79 (487)
Q Consensus 1 HGl~~~~~~~~DGv~~vtq~~I~PG~~~~Y~f~~~~~~Gt~wYH~H~~~~~-~Gl~G~liV~~~~~~~~~~~~~d~e~~l 79 (487)
|||+|.+++||||+++||||+|+||++|+|+|++ .++||||||||...|+ +||+|+|||+++.++..++ .+|+|++|
T Consensus 60 HGl~~~~~~~~DG~~~vtq~~I~PG~s~~y~f~~-~~~Gt~wyH~H~~~q~~~Gl~G~liV~~~~~~~~p~-~~d~e~~l 137 (541)
T TIGR03388 60 HGIRQIGTPWADGTAGVTQCAINPGETFIYNFVV-DRPGTYFYHGHYGMQRSAGLYGSLIVDVPDGEKEPF-HYDGEFNL 137 (541)
T ss_pred cCcCCcCCcccCCCCccccCCcCCCCEEEEEEEc-CCCEEEEEEecchHHhhccceEEEEEecCCCCCCCc-cccceEEE
Confidence 9999999999999999999999999999999998 7999999999999888 7999999999886544444 46899999
Q ss_pred EeeeccccChHHHHHHHhhcC-CCCCCCCeEEEcCcCCCCCCCCCC-------------------ceeeEEEeCCCEEEE
Q 040938 80 IFGEWWKADTEKIINQALQTG-AAPNISDAFTINGLPGPLYNCSAK-------------------DTFKLKVKPGKTYLL 139 (487)
Q Consensus 80 ~l~d~~~~~~~~~~~~~~~~g-~~~~~~d~~lvNG~~~~~~~~~~~-------------------~~~~~~v~~G~~~rl 139 (487)
+|+||+++............. .....++++||||++. +.|... ....++|++|++|||
T Consensus 138 ~l~Dw~~~~~~~~~~~~~~~~~~~~~~~d~~liNG~g~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~~~Rl 215 (541)
T TIGR03388 138 LLSDWWHKSIHEQEVGLSSKPMRWIGEPQSLLINGRGQ--FNCSLAAKFSSTNLPQCNLKGNEQCAPQILHVEPGKTYRL 215 (541)
T ss_pred EeecccCCCHHHHHhhcccCCCcCCCCCcceEECCCCC--CCCccccccCccccchhhccCCCCCCceEEEECCCCEEEE
Confidence 999999987655433222111 1123568999999963 344211 224689999999999
Q ss_pred EEEecCCCceEEEEEcCceEEEEEecCcccceeEeeEEEeCCCceEEEEEEecCCCCCcceEEEeccCCCCCCCCCCcce
Q 040938 140 RMINAALNDELFFSIANHTLTVVETDAVYVKPIKTKVVLITPGQTTNVLLKAKHKSPNASFLIAARPYATGPASFDNTTT 219 (487)
Q Consensus 140 R~iN~~~~~~~~~~i~~h~~~via~DG~~v~P~~~~~l~l~pG~R~dv~v~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~ 219 (487)
||||+|+.+.+.|+|++|+|+|||+||++++|++++.|.|++||||||+|++++.+ +++||||+.....+ ......
T Consensus 216 RliNa~~~~~~~~~id~h~~~VIa~DG~~v~P~~v~~l~i~~GqR~dvlv~~~~~~-~~~y~ira~~~~~~---~~~~~~ 291 (541)
T TIGR03388 216 RIASTTALAALNFAIEGHKLTVVEADGNYVEPFTVKDIDIYSGETYSVLLTTDQDP-SRNYWISVGVRGRK---PNTPPG 291 (541)
T ss_pred EEEcccccceEEEEECCCEEEEEEeCCEecccceeCeEEecCCCEEEEEEeCCCCC-CCcEEEEEecccCC---CCCccE
Confidence 99999999999999999999999999999999999999999999999999998754 36899999864332 123468
Q ss_pred EEEEEEecCCCCCCCCCCCCCCCCCCCCCCchhhhhhhhhhhccccCCCCCCCCCCcccEEEEEecccccCCCCCCcccC
Q 040938 220 AGVLEYEQPNNANKNKKLPLLKPALPKFNDTNFAMQFSKKIRSLATAKFPAKVPRKVDRLFFFTVGLGLSPCPQNQTCQG 299 (487)
Q Consensus 220 ~ail~y~~~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~p~~~p~~~d~~~~~~~~~~~~~~~~~~~~~~ 299 (487)
+|||+|.+......+ .... +..+.+.+......+. +..+..... ...+..+++++++......
T Consensus 292 ~aiL~Y~~~~~~~~p--~~~~-~~~p~~~~~~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~~----------- 354 (541)
T TIGR03388 292 LTVLNYYPNSPSRLP--PTPP-PVTPAWDDFDRSKAFS--LAIKAAMGS-PKPPETSDRRIVLLNTQNK----------- 354 (541)
T ss_pred EEEEEECCCCCCCCC--CCCC-CCCCCccccchhhccc--hhhhccccC-CCCCCCCCcEEEEeccCcc-----------
Confidence 899999875432110 0001 2233333322211111 111111111 1223456777655332211
Q ss_pred CCCCceeeeecceeccCCChhhhhhhhcCcccCcccCCCC-CCCCccccCCCCCCCCcccCCCceEEEecCCCEEEEEEe
Q 040938 300 PNNTMLAASINNVSFAQPNIALLQAHFFNKSKGVYTTDFP-ANPPFKFNYTGTPPSNIMVSSGTRAVALPFNASVEVVMQ 378 (487)
Q Consensus 300 ~~~~~~~~~iN~~~~~~p~~~~l~~~~~~~~~~~~~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~~l~ 378 (487)
.+....|++|+.+|..|..|+|.+.+.++. +.+..+.+ ...+..|+..... .+...+.|+.++.++.|++||++|+
T Consensus 355 -~~~~~~~~~n~~s~~~p~~p~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~Vdivi~ 431 (541)
T TIGR03388 355 -INGYTKWAINNVSLTLPHTPYLGSLKYNLL-NAFDQKPPPENYPRDYDIFKPP-PNPNTTTGNGIYRLKFNTTVDVILQ 431 (541)
T ss_pred -cCceEEEEECcccCCCCCccHHHHHhhcCC-ccccCCCCcccccccccccCCC-cccccccCceEEEecCCCeEEEEEE
Confidence 112356999999999888888777654332 22221110 0111112111100 0112345678899999999999999
Q ss_pred eCCCC---CCCCCCeeecCCceEEEEecCCCCCCCCCCCCCCCCCCCccceEEecCCcEEEEEEEcCCCeeEEEeecchh
Q 040938 379 DTSII---GAESHPLHLHGFNFFVVGQGFGNFDPSKDPAKFNLVDPAERNTVGVPSGGWVAIRFLADNPGAWFMHCHLEV 455 (487)
Q Consensus 379 n~~~~---~~~~HP~HlHg~~f~Vl~~g~g~~~~~~~~~~~n~~~p~~rDtv~v~~~~~~~irf~~dnpG~w~~HCHi~~ 455 (487)
|.... ....||||||||+||||++|.|.|+.......+|+.+|++|||+.|+++||++|||++||||.|+|||||+|
T Consensus 432 n~~~~~~~~~~~HP~HLHGh~F~vlg~g~g~~~~~~~~~~~n~~nP~~RDTv~vp~~gwvvIRF~adNPG~W~~HCHi~~ 511 (541)
T TIGR03388 432 NANTLNGNNSETHPWHLHGHDFWVLGYGEGKFRPGVDEKSYNLKNPPLRNTVVIFPYGWTALRFVADNPGVWAFHCHIEP 511 (541)
T ss_pred CCccccCCCCCCCcEEecCCceEEEeeccCCCCcccCcccccCCCCCEeceEEeCCCceEEEEEECCCCeEeeeeccchh
Confidence 96421 246899999999999999999999866555679999999999999999999999999999999999999999
Q ss_pred hhhccceEEEEEeCCCCCCCCCCCCCCCCCCC
Q 040938 456 HTSWGLKMAWIVNDGKGPKQKLPPPPSDLPKC 487 (487)
Q Consensus 456 H~~~GM~~~~~V~~~~~~~~~~~~~p~~~~~c 487 (487)
|+..||+++|.+. .++++++|+++++|
T Consensus 512 H~~~GM~~~~~e~-----~~~~~~~P~~~~~C 538 (541)
T TIGR03388 512 HLHMGMGVVFAEG-----VEKVGKLPKEALGC 538 (541)
T ss_pred hhhcccEEEEecc-----ccccCCCCccccCC
Confidence 9999999999652 35678899999999
No 10
>PLN02191 L-ascorbate oxidase
Probab=100.00 E-value=4.2e-86 Score=698.65 Aligned_cols=453 Identities=30% Similarity=0.562 Sum_probs=325.7
Q ss_pred CccccCCCCCCCCCCCcccccCCCCCeEEEEEEeCCCccceeecccccccc-ccceeeEEEeCCCCCCCCCCCCCcceeE
Q 040938 1 HGVRQLRSGWADGPAYITQCPIQTGQSYVYNFTVTGQRGTLFWHAHISWLR-ATLYGPIVILPKRHASYPFPQPFKEVPM 79 (487)
Q Consensus 1 HGl~~~~~~~~DGv~~vtq~~I~PG~~~~Y~f~~~~~~Gt~wYH~H~~~~~-~Gl~G~liV~~~~~~~~~~~~~d~e~~l 79 (487)
|||+|++++||||||++|||||+||++|+|+|++ .++||||||||...|+ +||+|+|||+++.+...++ .+|+|++|
T Consensus 82 HGl~~~~~~~~DGv~gvtq~pI~PG~s~~Y~f~~-~~~GT~wYHsH~~~q~~~Gl~G~liV~~~~~~~~~~-~~d~e~~l 159 (574)
T PLN02191 82 HGIRQKGSPWADGAAGVTQCAINPGETFTYKFTV-EKPGTHFYHGHYGMQRSAGLYGSLIVDVAKGPKERL-RYDGEFNL 159 (574)
T ss_pred CCCCCCCCccccCCCccccCCcCCCCeEEEEEEC-CCCeEEEEeeCcHHHHhCCCEEEEEEccCCCCCCCC-CCCeeEEE
Confidence 9999999999999999999999999999999998 7999999999999998 8999999999765433232 46999999
Q ss_pred EeeeccccChHHHHHHHhh-cCCCCCCCCeEEEcCcCCCCCCCCC--------------------CceeeEEEeCCCEEE
Q 040938 80 IFGEWWKADTEKIINQALQ-TGAAPNISDAFTINGLPGPLYNCSA--------------------KDTFKLKVKPGKTYL 138 (487)
Q Consensus 80 ~l~d~~~~~~~~~~~~~~~-~g~~~~~~d~~lvNG~~~~~~~~~~--------------------~~~~~~~v~~G~~~r 138 (487)
+|+||++............ ......+++++||||++. +.|+. ....+++|++||+||
T Consensus 160 ~l~Dw~~~~~~~~~~~~~~~~~~~~~~~d~~liNG~g~--~~~~~~~~~~~~~~~~~~~~~~n~~~~p~~~~v~~G~~yR 237 (574)
T PLN02191 160 LLSDWWHESIPSQELGLSSKPMRWIGEAQSILINGRGQ--FNCSLAAQFSNGTELPMCTFKEGDQCAPQTLRVEPNKTYR 237 (574)
T ss_pred eeeccccCChHHHHHhhccCCCCcCCCCCceEECCCCC--CCCcccccccCCcccccceeccCCCCCceEEEEcCCCEEE
Confidence 9999999865433222111 111224678999999863 34421 122379999999999
Q ss_pred EEEEecCCCceEEEEEcCceEEEEEecCcccceeEeeEEEeCCCceEEEEEEecCCCCCcceEEEeccCCCCCCCCCCcc
Q 040938 139 LRMINAALNDELFFSIANHTLTVVETDAVYVKPIKTKVVLITPGQTTNVLLKAKHKSPNASFLIAARPYATGPASFDNTT 218 (487)
Q Consensus 139 lR~iN~~~~~~~~~~i~~h~~~via~DG~~v~P~~~~~l~l~pG~R~dv~v~~~~~~~~g~~~i~~~~~~~~~~~~~~~~ 218 (487)
|||||+|+.+.+.|+|+||+|+|||+||.+++|++++.|.|++||||||+|++++.+ +++||||+.....+. ....
T Consensus 238 lRiINa~~~~~~~~~idgH~~tVIa~DG~~v~P~~v~~l~i~~GqRydVlV~a~~~~-~~~y~ira~~~~~~~---~~~~ 313 (574)
T PLN02191 238 IRLASTTALASLNLAVQGHKLVVVEADGNYITPFTTDDIDIYSGESYSVLLTTDQDP-SQNYYISVGVRGRKP---NTTQ 313 (574)
T ss_pred EEEEecCCceeEEEEECCCeEEEEEcCCeeccceEeeeEEEcCCCeEEEEEECCCCC-CCCEEEEEEccccCC---CCCC
Confidence 999999999999999999999999999999999999999999999999999999864 358999997533221 2234
Q ss_pred eEEEEEEecCCCCCCCCCCCCCCCCCCCCCCchhhhhhhhhhhccccCCCCCCCCC-CcccEEEEEecccccCCCCCCcc
Q 040938 219 TAGVLEYEQPNNANKNKKLPLLKPALPKFNDTNFAMQFSKKIRSLATAKFPAKVPR-KVDRLFFFTVGLGLSPCPQNQTC 297 (487)
Q Consensus 219 ~~ail~y~~~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~p~~~p~-~~d~~~~~~~~~~~~~~~~~~~~ 297 (487)
..|||+|.+......+ .... +..|.+.+......+...+ +.....+ ..|. ..+.++.+.... .
T Consensus 314 ~~ail~Y~~~~~~~~p--~~~~-~~~p~~~~~~~~~~~~~~~--~~~~~~~-~~p~~~~~~~~~~~~~~--~-------- 377 (574)
T PLN02191 314 ALTILNYVTAPASKLP--SSPP-PVTPRWDDFERSKNFSKKI--FSAMGSP-SPPKKYRKRLILLNTQN--L-------- 377 (574)
T ss_pred ceEEEEECCCCCCCCC--CCCC-CCCCcccccchhhcccccc--cccccCC-CCCCcccceEEEecccc--e--------
Confidence 5799999876432111 0001 1222333322111111111 1111111 1121 234444333111 0
Q ss_pred cCCCCCceeeeecceeccCCChhhhhhhhcCcccCcccCCCCCCC-CccccCCCCCCCCcccCCCceEEEecCCCEEEEE
Q 040938 298 QGPNNTMLAASINNVSFAQPNIALLQAHFFNKSKGVYTTDFPANP-PFKFNYTGTPPSNIMVSSGTRAVALPFNASVEVV 376 (487)
Q Consensus 298 ~~~~~~~~~~~iN~~~~~~p~~~~l~~~~~~~~~~~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~~ 376 (487)
......|++|+.+|..|..|+|.+.+.+.. +.+..+.+... +..|+..+.... ...+.++.++.++.|++|||+
T Consensus 378 ---~~~~~~~~~n~~s~~~p~~P~L~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~Vdiv 452 (574)
T PLN02191 378 ---IDGYTKWAINNVSLVTPATPYLGSVKYNLK-LGFNRKSPPRSYRMDYDIMNPPPF-PNTTTGNGIYVFPFNVTVDVI 452 (574)
T ss_pred ---eCCeEEEEECcccCcCCCcchHHHHhhccC-cccccCCCcccccccccccCCCcc-ccccccceeEEecCCCEEEEE
Confidence 112357999999999888887777654432 33333322111 112221111000 012346778999999999999
Q ss_pred EeeCCCC---CCCCCCeeecCCceEEEEecCCCCCCCCCCCCCCCCCCCccceEEecCCcEEEEEEEcCCCeeEEEeecc
Q 040938 377 MQDTSII---GAESHPLHLHGFNFFVVGQGFGNFDPSKDPAKFNLVDPAERNTVGVPSGGWVAIRFLADNPGAWFMHCHL 453 (487)
Q Consensus 377 l~n~~~~---~~~~HP~HlHg~~f~Vl~~g~g~~~~~~~~~~~n~~~p~~rDtv~v~~~~~~~irf~~dnpG~w~~HCHi 453 (487)
|+|.... ....||||||||+||||++|.|.|++......+|+.||++|||+.|+++||++|||++||||.|+|||||
T Consensus 453 i~n~~~~~~~~~~~HP~HLHGh~F~Vlg~G~g~~~~~~~~~~~nl~nP~rRDTv~vp~~Gw~vIRf~aDNPG~Wl~HCHi 532 (574)
T PLN02191 453 IQNANVLKGVVSEIHPWHLHGHDFWVLGYGDGKFKPGIDEKTYNLKNPPLRNTAILYPYGWTAIRFVTDNPGVWFFHCHI 532 (574)
T ss_pred EECCCcccCCCCCCCCEEeCCCCeEEEEecCCCCCcccCcccccCCCCCcCCeEEeCCCCEEEEEEECCCCEEEEEecCc
Confidence 9996411 2578999999999999999999998754445789999999999999999999999999999999999999
Q ss_pred hhhhhccceEEEEEeCCCCCCCCCCCCCCCCCCC
Q 040938 454 EVHTSWGLKMAWIVNDGKGPKQKLPPPPSDLPKC 487 (487)
Q Consensus 454 ~~H~~~GM~~~~~V~~~~~~~~~~~~~p~~~~~c 487 (487)
.||+..||.++|.. + .++++.+|+++++|
T Consensus 533 ~~Hl~~Gm~~~~~e--~---~~~~~~~p~~~~~C 561 (574)
T PLN02191 533 EPHLHMGMGVVFAE--G---LNRIGKIPDEALGC 561 (574)
T ss_pred hhhhhcCCEEEEec--C---hhhccCCCcchhhh
Confidence 99999999999953 2 24456678889999
No 11
>PLN02604 oxidoreductase
Probab=100.00 E-value=6.9e-85 Score=691.00 Aligned_cols=453 Identities=33% Similarity=0.560 Sum_probs=334.2
Q ss_pred CccccCCCCCCCCCCCcccccCCCCCeEEEEEEeCCCccceeecccccccc-ccceeeEEEeCCCCCCCCCCCCCcceeE
Q 040938 1 HGVRQLRSGWADGPAYITQCPIQTGQSYVYNFTVTGQRGTLFWHAHISWLR-ATLYGPIVILPKRHASYPFPQPFKEVPM 79 (487)
Q Consensus 1 HGl~~~~~~~~DGv~~vtq~~I~PG~~~~Y~f~~~~~~Gt~wYH~H~~~~~-~Gl~G~liV~~~~~~~~~~~~~d~e~~l 79 (487)
||++|.+++||||++++|||+|+||++|+|+|++ +++||||||||...|+ +||+|+|||+++.++..|+ .+|.|.+|
T Consensus 83 HG~~~~~~~~~DG~~~~tq~~i~pg~s~~y~f~~-~~~Gt~wyH~H~~~q~~~Gl~G~liV~~~~~~~~p~-~~d~d~~l 160 (566)
T PLN02604 83 HGIRQIGTPWFDGTEGVTQCPILPGETFTYEFVV-DRPGTYLYHAHYGMQREAGLYGSIRVSLPRGKSEPF-SYDYDRSI 160 (566)
T ss_pred CCCCCCCCccccCCCccccCccCCCCeEEEEEEc-CCCEEEEEeeCcHHHHhCCCeEEEEEEecCCCCCcc-ccCcceEE
Confidence 8999999999999999999999999999999998 8999999999999888 7999999999886544455 46889999
Q ss_pred EeeeccccChHHHHHHHhh-cCCCCCCCCeEEEcCcCCCCCCCCC-----------------CceeeEEEeCCCEEEEEE
Q 040938 80 IFGEWWKADTEKIINQALQ-TGAAPNISDAFTINGLPGPLYNCSA-----------------KDTFKLKVKPGKTYLLRM 141 (487)
Q Consensus 80 ~l~d~~~~~~~~~~~~~~~-~g~~~~~~d~~lvNG~~~~~~~~~~-----------------~~~~~~~v~~G~~~rlR~ 141 (487)
+|+||+++...+....... ......++++++|||++. +.|+. ...++++|++|++|||||
T Consensus 161 ~l~Dw~~~~~~~~~~~~~~~~~~~~~~~d~~liNG~G~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~~~RlRl 238 (566)
T PLN02604 161 ILTDWYHKSTYEQALGLSSIPFDWVGEPQSLLIQGKGR--YNCSLVSSPYLKAGVCNATNPECSPYVLTVVPGKTYRLRI 238 (566)
T ss_pred EeeccccCCHHHHHHhhccCCCccCCCCCceEEcCCCC--CCCccccCccccccccccCCCCCCceEEEecCCCEEEEEE
Confidence 9999999887654433221 111123679999999963 44531 134589999999999999
Q ss_pred EecCCCceEEEEEcCceEEEEEecCcccceeEeeEEEeCCCceEEEEEEecCCCCCcceEEEeccCCCCCCCCCCcceEE
Q 040938 142 INAALNDELFFSIANHTLTVVETDAVYVKPIKTKVVLITPGQTTNVLLKAKHKSPNASFLIAARPYATGPASFDNTTTAG 221 (487)
Q Consensus 142 iN~~~~~~~~~~i~~h~~~via~DG~~v~P~~~~~l~l~pG~R~dv~v~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~a 221 (487)
||+|+.+.+.|+||||+|+|||+||.+++|++++.|.|++||||||+|++++.+ +++||||+.....+ .+...++|
T Consensus 239 INa~~~~~~~~sidgH~~~VIa~DG~~v~P~~v~~l~l~~GqRydvlV~~~~~~-~~~y~ira~~~~~~---~~~~~~~a 314 (566)
T PLN02604 239 SSLTALSALSFQIEGHNMTVVEADGHYVEPFVVKNLFIYSGETYSVLVKADQDP-SRNYWVTTSVVSRN---NTTPPGLA 314 (566)
T ss_pred EeccccceEEEEECCCEEEEEEeCCEecccceeeeEEEccCCeEEEEEECCCCC-CCCEEEEEecccCC---CCCcceeE
Confidence 999999999999999999999999999999999999999999999999998864 35899998754332 13356899
Q ss_pred EEEEecCCCCCCCCCCCCCCCCCCCCCCchhhhhhhhhhhccccCCCCCCCCCCcccEEEEEecccccCCCCCCcccCCC
Q 040938 222 VLEYEQPNNANKNKKLPLLKPALPKFNDTNFAMQFSKKIRSLATAKFPAKVPRKVDRLFFFTVGLGLSPCPQNQTCQGPN 301 (487)
Q Consensus 222 il~y~~~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~p~~~p~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 301 (487)
||+|++...... .+...+..+.+.+..........+..+.. .+...+...++++.+...... .
T Consensus 315 IL~Y~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~d~~~~~~~~~~~------------~ 377 (566)
T PLN02604 315 IFNYYPNHPRRS---PPTVPPSGPLWNDVEPRLNQSLAIKARHG--YIHPPPLTSDRVIVLLNTQNE------------V 377 (566)
T ss_pred EEEECCCCCCCC---CCCCCCCCCcccccchhhcchhccccccc--CcCCCCCCCCeEEEEeccccc------------c
Confidence 999986432111 11111212223222111111111111111 111123345666655322211 1
Q ss_pred CCceeeeecceeccCCChhhhhhhhcCcccCcccCCCCCCCCccccC---CCCC-CCCcccCCCceEEEecCCCEEEEEE
Q 040938 302 NTMLAASINNVSFAQPNIALLQAHFFNKSKGVYTTDFPANPPFKFNY---TGTP-PSNIMVSSGTRAVALPFNASVEVVM 377 (487)
Q Consensus 302 ~~~~~~~iN~~~~~~p~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~~---~~~~-~~~~~~~~~~~~~~v~~g~~v~~~l 377 (487)
+..+.|++|+.+|..|..|+|.+.+.... +.++.+. ++..+.. +... ..+...+.+..++.++.|++||++|
T Consensus 378 ~~~~~w~in~~~~~~p~~p~L~~~~~~~~-~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~Vdivi 453 (566)
T PLN02604 378 NGYRRWSVNNVSFNLPHTPYLIALKENLT-GAFDQTP---PPEGYDFANYDIYAKPNNSNATSSDSIYRLQFNSTVDIIL 453 (566)
T ss_pred CCeEEEEECcccCCCCCCchhHhhhhcCC-CcccCCC---CCcccccccccccCCccccccccCceEEEccCCCeEEEEE
Confidence 12467999999999888888777655432 4444221 1211111 0000 0011123467789999999999999
Q ss_pred eeCCCC---CCCCCCeeecCCceEEEEecCCCCCCCCCCCCCCCCCCCccceEEecCCcEEEEEEEcCCCeeEEEeecch
Q 040938 378 QDTSII---GAESHPLHLHGFNFFVVGQGFGNFDPSKDPAKFNLVDPAERNTVGVPSGGWVAIRFLADNPGAWFMHCHLE 454 (487)
Q Consensus 378 ~n~~~~---~~~~HP~HlHg~~f~Vl~~g~g~~~~~~~~~~~n~~~p~~rDtv~v~~~~~~~irf~~dnpG~w~~HCHi~ 454 (487)
+|.... ....||||||||+||||++|.|.|++......+|+.+|++|||+.|+++||++|||++||||.|+|||||+
T Consensus 454 ~n~~~~~~~~~~~HP~HLHGH~F~Vlg~G~G~~~~~~~~~~~nl~nP~rRDTv~vp~~gwvvIRF~aDNPG~WlfHCHI~ 533 (566)
T PLN02604 454 QNANTMNANNSETHPWHLHGHDFWVLGYGEGKFNMSSDPKKYNLVDPIMKNTVPVHPYGWTALRFRADNPGVWAFHCHIE 533 (566)
T ss_pred ECCccccCCCCCCCCEEecCCceEEEEecCCCCCccccccccCCCCCCccceEEeCCCceEEEEEECCCCeEeeEeecch
Confidence 996421 24679999999999999999999987765668999999999999999999999999999999999999999
Q ss_pred hhhhccceEEEEEeCCCCCCCCCCCCCCCCCCC
Q 040938 455 VHTSWGLKMAWIVNDGKGPKQKLPPPPSDLPKC 487 (487)
Q Consensus 455 ~H~~~GM~~~~~V~~~~~~~~~~~~~p~~~~~c 487 (487)
||+..||+++|.+. .+.++++|.++++|
T Consensus 534 ~Hl~~GM~~v~~e~-----~~~~~~~p~~~~~C 561 (566)
T PLN02604 534 SHFFMGMGVVFEEG-----IERVGKLPSSIMGC 561 (566)
T ss_pred hHhhcCCEEEEeeC-----hhhccCCCCCcCcc
Confidence 99999999999652 35678899999999
No 12
>TIGR03390 ascorbOXfungal L-ascorbate oxidase, fungal type. This model describes a family of fungal ascorbate oxidases, within a larger family of multicopper oxidases that also includes plant ascorbate oxidases (TIGR03388), plant laccases and laccase-like proteins (TIGR03389), and related proteins. The member from Acremonium sp. HI-25 is characterized.
Probab=100.00 E-value=4.7e-83 Score=673.22 Aligned_cols=434 Identities=27% Similarity=0.471 Sum_probs=318.8
Q ss_pred CccccCCCCCCCCCCCcccccCCCCCeEEEEEEeC-CCccceeeccccccccccceeeEEEeCCCCCCCCCCCCCcceeE
Q 040938 1 HGVRQLRSGWADGPAYITQCPIQTGQSYVYNFTVT-GQRGTLFWHAHISWLRATLYGPIVILPKRHASYPFPQPFKEVPM 79 (487)
Q Consensus 1 HGl~~~~~~~~DGv~~vtq~~I~PG~~~~Y~f~~~-~~~Gt~wYH~H~~~~~~Gl~G~liV~~~~~~~~~~~~~d~e~~l 79 (487)
|||+|++++||||||++|||||+||++|+|+|+++ +++||||||||.+.|+.||+|+|||+++.+.++ .+|+|++|
T Consensus 67 HGi~~~~~~~~DGvp~vTQcpI~PG~sf~Y~f~~~~~q~GT~WYHsH~~~Q~~~l~G~lIV~~~~~~~~---~~d~e~~l 143 (538)
T TIGR03390 67 HGLTQRTAPFSDGTPLASQWPIPPGHFFDYEIKPEPGDAGSYFYHSHVGFQAVTAFGPLIVEDCEPPPY---KYDDERIL 143 (538)
T ss_pred CCCCCCCCCCCCCCcccccCCCCCCCcEEEEEEecCCCCeeeEEecCCchhhhcceeEEEEccCCccCC---CccCcEEE
Confidence 99999999999999999999999999999999974 689999999999999988999999998764333 35899999
Q ss_pred EeeeccccChHHHHHHHhhcC-CCCCCCCeEEEcCcCCCCCCC----C---CCceeeEEEeCCCEEEEEEEecCCCceEE
Q 040938 80 IFGEWWKADTEKIINQALQTG-AAPNISDAFTINGLPGPLYNC----S---AKDTFKLKVKPGKTYLLRMINAALNDELF 151 (487)
Q Consensus 80 ~l~d~~~~~~~~~~~~~~~~g-~~~~~~d~~lvNG~~~~~~~~----~---~~~~~~~~v~~G~~~rlR~iN~~~~~~~~ 151 (487)
+|+||+++...++........ ....+++++|||||..... | + ....++++|++||+|||||||+|+.+.+.
T Consensus 144 ~l~Dw~~~~~~~~~~~~~~~~~~~~~~~d~~liNG~~~~~~-~~~~~~~~~~~~~~~~~v~~G~~yRlRlINa~~~~~~~ 222 (538)
T TIGR03390 144 LVSDFFSATDEEIEQGLLSTPFTWSGETEAVLLNGKSGNKS-FYAQINPSGSCMLPVIDVEPGKTYRLRFIGATALSLIS 222 (538)
T ss_pred EEeCCCCCCHHHHHhhhhccCCccCCCCceEEECCcccccc-ccccccCCCCCcceEEEECCCCEEEEEEEccCCceEEE
Confidence 999999998777654433221 1124568999999965332 1 0 11357899999999999999999999999
Q ss_pred EEEcCce-EEEEEecCcccceeEeeEEEeCCCceEEEEEEecCCCC-----CcceEEEeccCCCCCCCCCCcceEEEEEE
Q 040938 152 FSIANHT-LTVVETDAVYVKPIKTKVVLITPGQTTNVLLKAKHKSP-----NASFLIAARPYATGPASFDNTTTAGVLEY 225 (487)
Q Consensus 152 ~~i~~h~-~~via~DG~~v~P~~~~~l~l~pG~R~dv~v~~~~~~~-----~g~~~i~~~~~~~~~~~~~~~~~~ail~y 225 (487)
|+|+||+ |+|||+||++++|+.++.|.|++||||||+|++++..+ .++||||+.....+ +.....|+|+|
T Consensus 223 ~~idgH~~~~VIa~DG~~~~P~~v~~l~l~~GqRydVlv~~~~~~~~~~~~~~~Y~ir~~~~~~~----~~~~~~aiL~Y 298 (538)
T TIGR03390 223 LGIEDHENLTIIEADGSYTKPAKIDHLQLGGGQRYSVLFKAKTEDELCGGDKRQYFIQFETRDRP----KVYRGYAVLRY 298 (538)
T ss_pred EEECCCCeEEEEEeCCCCCCceEeCeEEEccCCEEEEEEECCCccccccCCCCcEEEEEeecCCC----CcceEEEEEEe
Confidence 9999999 99999999999999999999999999999999987521 27999999764322 23457899999
Q ss_pred ecCCCCCCCCCCCCCCCCCCCCCCc-hhhhhhhhhhhccccCCCC-CCCCCCcccEEEEEecccccCCCCCCcccCCCCC
Q 040938 226 EQPNNANKNKKLPLLKPALPKFNDT-NFAMQFSKKIRSLATAKFP-AKVPRKVDRLFFFTVGLGLSPCPQNQTCQGPNNT 303 (487)
Q Consensus 226 ~~~~~~~~~~~~~~~~p~~p~~~~~-~~~~~~~~~~~~~~~~~~p-~~~p~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (487)
++..... .+.. |..+..... .........+.++.....+ .+.+..+++++.+.+.+.... ...
T Consensus 299 ~~~~~~~----~~~~-p~~~~~~~~~~~~~~~~~~l~pl~~~~~~~~~~~~~~d~~~~l~~~~~~~~----------~~g 363 (538)
T TIGR03390 299 RSDKASK----LPSV-PETPPLPLPNSTYDWLEYELEPLSEENNQDFPTLDEVTRRVVIDAHQNVDP----------LNG 363 (538)
T ss_pred CCCCCCC----CCCC-CCCCCCCccCcchhhhheeeEecCccccCCCCCCCcCceEEEEEccccccc----------cCC
Confidence 7653211 1111 111111000 0000111123333221111 112345677777766543210 123
Q ss_pred ceeeeecceeccC--CChhhhhhhhcCcccCcccCCCCCCCCccccCCCCCCCCcccCCCceEEEecCCCEEEEEEeeCC
Q 040938 304 MLAASINNVSFAQ--PNIALLQAHFFNKSKGVYTTDFPANPPFKFNYTGTPPSNIMVSSGTRAVALPFNASVEVVMQDTS 381 (487)
Q Consensus 304 ~~~~~iN~~~~~~--p~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~~l~n~~ 381 (487)
.+.|++|+++|.. |..|+|...+.+ +. +..++ |+.. . ........+.++.++.|++|+|+|+|..
T Consensus 364 ~~~~~~N~~s~~~~~~~~P~L~~~~~~---~~-----~~~~~--~~~~--~-~~~~~~~~~~~~~~~~~~~V~ivi~n~~ 430 (538)
T TIGR03390 364 RVAWLQNGLSWTESVRQTPYLVDIYEN---GL-----PATPN--YTAA--L-ANYGFDPETRAFPAKVGEVLEIVWQNTG 430 (538)
T ss_pred eEEEEECCcccCCCCCCCchHHHHhcC---CC-----CcCCC--cccc--c-ccCCcCcCceEEEcCCCCEEEEEEECCc
Confidence 4679999999985 677877665432 10 00010 1100 0 0001123456788999999999999964
Q ss_pred CC-----CCCCCCeeecCCceEEEEecCCCCCCCCCCCCCCCCCCCccceEEec----------CCcEEEEEEEcCCCee
Q 040938 382 II-----GAESHPLHLHGFNFFVVGQGFGNFDPSKDPAKFNLVDPAERNTVGVP----------SGGWVAIRFLADNPGA 446 (487)
Q Consensus 382 ~~-----~~~~HP~HlHg~~f~Vl~~g~g~~~~~~~~~~~n~~~p~~rDtv~v~----------~~~~~~irf~~dnpG~ 446 (487)
.. ....||||||||+||||++|.|.|++......+|+.||++|||+.|+ +++|++|||++||||.
T Consensus 431 ~~~~~~~~~~~HP~HlHGh~F~vlg~G~G~~~~~~~~~~~nl~nP~rRDTv~vp~~~~~~~~~~~~~~~~ir~~~dNPG~ 510 (538)
T TIGR03390 431 SYTGPNGGVDTHPFHAHGRHFYDIGGGDGEYNATANEAKLENYTPVLRDTTMLYRYAVKVVPGAPAGWRAWRIRVTNPGV 510 (538)
T ss_pred ccccCCCCCCCCCeeecCCcEEEEcccccccCCccChhhhccCCCCeecceeeccccccccccCCCceEEEEEEcCCCee
Confidence 11 24789999999999999999999987654457889999999999996 8899999999999999
Q ss_pred EEEeecchhhhhccceEEEEEeCC
Q 040938 447 WFMHCHLEVHTSWGLKMAWIVNDG 470 (487)
Q Consensus 447 w~~HCHi~~H~~~GM~~~~~V~~~ 470 (487)
|+|||||.||+..||+++|.|.+.
T Consensus 511 W~~HCHi~~H~~~Gm~~~~~~~~~ 534 (538)
T TIGR03390 511 WMMHCHILQHMVMGMQTVWVFGDA 534 (538)
T ss_pred EEEeccchhhhhccceEEEEeCCh
Confidence 999999999999999999998654
No 13
>TIGR01480 copper_res_A copper-resistance protein, CopA family. This model represents the CopA copper resistance protein family. CopA is related to laccase (benzenediol:oxygen oxidoreductase) and L-ascorbate oxidase, both copper-containing enzymes. Most members have a typical TAT (twin-arginine translocation) signal sequence with an Arg-Arg pair. Twin-arginine translocation is observed for a large number of periplasmic proteins that cross the inner membrane with metal-containing cofactors already bound. The combination of copper-binding sites and TAT translocation motif suggests a mechansism of resistance by packaging and export.
Probab=100.00 E-value=2.8e-66 Score=545.31 Aligned_cols=365 Identities=26% Similarity=0.425 Sum_probs=261.1
Q ss_pred CccccCCCCCCCCCCCcccccCCCCCeEEEEEEeCCCccceeecccccccc-ccceeeEEEeCCCCCCCCCCCCCcceeE
Q 040938 1 HGVRQLRSGWADGPAYITQCPIQTGQSYVYNFTVTGQRGTLFWHAHISWLR-ATLYGPIVILPKRHASYPFPQPFKEVPM 79 (487)
Q Consensus 1 HGl~~~~~~~~DGv~~vtq~~I~PG~~~~Y~f~~~~~~Gt~wYH~H~~~~~-~Gl~G~liV~~~~~~~~~~~~~d~e~~l 79 (487)
|||++++ +|||||++|||+|+||++|+|+|++ .++||||||||...|. .||+|+|||+++.+.++ .+|+|++|
T Consensus 103 HGl~~~~--~~DGvP~vt~~~I~PG~s~~Y~f~~-~~~GTyWYHsH~~~q~~~GL~G~lIV~~~~~~p~---~~D~E~vl 176 (587)
T TIGR01480 103 HGILLPF--QMDGVPGVSFAGIAPGETFTYRFPV-RQSGTYWYHSHSGFQEQAGLYGPLIIDPAEPDPV---RADREHVV 176 (587)
T ss_pred CCCcCCc--cccCCCcccccccCCCCeEEEEEEC-CCCeeEEEecCchhHhhccceEEEEECCCccccC---CCCceEEE
Confidence 9999875 5999999999999999999999998 7899999999998887 79999999998754433 46899999
Q ss_pred EeeeccccChHHHHHHHhh---------------------cCCC---------------C-------CCCCeEEEcCcCC
Q 040938 80 IFGEWWKADTEKIINQALQ---------------------TGAA---------------P-------NISDAFTINGLPG 116 (487)
Q Consensus 80 ~l~d~~~~~~~~~~~~~~~---------------------~g~~---------------~-------~~~d~~lvNG~~~ 116 (487)
+|+||++.+...++..+.. .|.. + .....+||||+..
T Consensus 177 ~L~Dw~~~~p~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~d~~dv~G~~~~~LiNG~~~ 256 (587)
T TIGR01480 177 LLSDWTDLDPAALFRKLKVMAGHDNYYKRTVADFFRDVRNDGLKQTLADRKMWGQMRMTPTDLADVNGSTYTYLMNGTTP 256 (587)
T ss_pred EeeecccCCHHHHHHhhhcccccccccccchhhhhhhhccccccccccccccccccccCCcccccccCccceEEEcCccC
Confidence 9999998766554332210 0100 0 0012478999853
Q ss_pred CCCCCCCCceeeEEEeCCCEEEEEEEecCCCceEEEEEcCceEEEEEecCcccceeEeeEEEeCCCceEEEEEEecCCCC
Q 040938 117 PLYNCSAKDTFKLKVKPGKTYLLRMINAALNDELFFSIANHTLTVVETDAVYVKPIKTKVVLITPGQTTNVLLKAKHKSP 196 (487)
Q Consensus 117 ~~~~~~~~~~~~~~v~~G~~~rlR~iN~~~~~~~~~~i~~h~~~via~DG~~v~P~~~~~l~l~pG~R~dv~v~~~~~~~ 196 (487)
...+++.|++|++|||||||+|+.+.+.|+|+||+|+|||+||++|+|+.++.|.|++||||||+|++.+.
T Consensus 257 -------~~~~~~~v~~G~rvRLR~INas~~~~f~l~I~gh~m~VIa~DG~~v~Pv~vd~l~I~pGeRyDVlV~~~~~-- 327 (587)
T TIGR01480 257 -------AGNWTGLFRPGEKVRLRFINGSAMTYFDVRIPGLKLTVVAVDGQYVHPVSVDEFRIAPAETFDVIVEPTGD-- 327 (587)
T ss_pred -------CCCceEEECCCCEEEEEEEecCCCceEEEEECCCEEEEEEcCCcCcCceEeCeEEEcCcceeEEEEecCCC--
Confidence 12467999999999999999999999999999999999999999999999999999999999999998753
Q ss_pred CcceEEEeccCCCCCCCCCCcceEEEEEEecCCCCCCCCCCCCCCC-CCCCCCCchh-hh---------hh--------h
Q 040938 197 NASFLIAARPYATGPASFDNTTTAGVLEYEQPNNANKNKKLPLLKP-ALPKFNDTNF-AM---------QF--------S 257 (487)
Q Consensus 197 ~g~~~i~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~~~~~~p-~~p~~~~~~~-~~---------~~--------~ 257 (487)
|.|+|.+....+ .....++|++.+... . ..|.+++ ......+... .. .+ .
T Consensus 328 -g~~~i~a~~~~~------~~~~~~~l~~~~~~~--~--~~p~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (587)
T TIGR01480 328 -DAFTIFAQDSDR------TGYARGTLAVRLGLT--A--PVPALDPRPLLTMKDMGMGGMHHGMDHSKMSMGGMPGMDMS 396 (587)
T ss_pred -ceEEEEEEecCC------CceEEEEEecCCCCC--C--CCCCCCCccccChhhcccccccccccccccccCcccccCcc
Confidence 799999876432 235778888765411 1 1222211 0000101000 00 00 0
Q ss_pred ---------------------------------------------------------hhhhccccCCCCCCCCCCcccEE
Q 040938 258 ---------------------------------------------------------KKIRSLATAKFPAKVPRKVDRLF 280 (487)
Q Consensus 258 ---------------------------------------------------------~~~~~~~~~~~p~~~p~~~d~~~ 280 (487)
.....|... .+...+...++++
T Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~l~~~-~~~~~~~~p~r~~ 475 (587)
T TIGR01480 397 MRAQSNAPMDHSQMAMDASPKHPASEPLNPLVDMIVDMPMDRMDDPGIGLRDNGRRVLTYADLHSL-FPPPDGRAPGREI 475 (587)
T ss_pred ccccccccCccccccccccccCcccccCCccccccccCcccccCCCCcccccCCcceeehhhcccc-ccccCcCCCCceE
Confidence 000000000 0000001122222
Q ss_pred EEEecccccCCCCCCcccCCCCCceeeeecceeccCCChhhhhhhhcCcccCcccCCCCCCCCccccCCCCCCCCcccCC
Q 040938 281 FFTVGLGLSPCPQNQTCQGPNNTMLAASINNVSFAQPNIALLQAHFFNKSKGVYTTDFPANPPFKFNYTGTPPSNIMVSS 360 (487)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iN~~~~~~p~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 360 (487)
.+.+.- +..++.|++||..|.
T Consensus 476 ~~~L~g--------------~m~~~~wtiNG~~~~--------------------------------------------- 496 (587)
T TIGR01480 476 ELHLTG--------------NMERFAWSFDGEAFG--------------------------------------------- 496 (587)
T ss_pred EEEEcC--------------CCceeEEEECCccCC---------------------------------------------
Confidence 222210 112456778776541
Q ss_pred CceEEEecCCCEEEEEEeeCCCCCCCCCCeeecCCceEEEEecCCCCCCCCCCCCCCCCCCCccceEEecCCcEEEEEEE
Q 040938 361 GTRAVALPFNASVEVVMQDTSIIGAESHPLHLHGFNFFVVGQGFGNFDPSKDPAKFNLVDPAERNTVGVPSGGWVAIRFL 440 (487)
Q Consensus 361 ~~~~~~v~~g~~v~~~l~n~~~~~~~~HP~HlHg~~f~Vl~~g~g~~~~~~~~~~~n~~~p~~rDtv~v~~~~~~~irf~ 440 (487)
....+.++.|++|+|.|.|.. .+.|||||||+.|+|+..+ |. .+.++||+.|+||+.++++|+
T Consensus 497 ~~~pl~v~~Gervri~l~N~t---~~~HpmHlHG~~f~v~~~~-G~-------------~~~~~dTv~V~Pg~t~~~~f~ 559 (587)
T TIGR01480 497 LKTPLRFNYGERLRVVLVNDT---MMAHPIHLHGMWSELEDGQ-GE-------------FQVRKHTVDVPPGGKRSFRVT 559 (587)
T ss_pred CCCceEecCCCEEEEEEECCC---CCCcceeEcCceeeeecCC-Cc-------------ccccCCceeeCCCCEEEEEEE
Confidence 012356889999999999975 4899999999999998643 21 134789999999999999999
Q ss_pred cCCCeeEEEeecchhhhhccceEEEEEe
Q 040938 441 ADNPGAWFMHCHLEVHTSWGLKMAWIVN 468 (487)
Q Consensus 441 ~dnpG~w~~HCHi~~H~~~GM~~~~~V~ 468 (487)
+||||.|+||||++.|++.|||+.|.|.
T Consensus 560 ad~pG~w~~HCH~l~H~~~GM~~~~~v~ 587 (587)
T TIGR01480 560 ADALGRWAYHCHMLLHMEAGMFREVTVR 587 (587)
T ss_pred CCCCeEEEEcCCCHHHHhCcCcEEEEeC
Confidence 9999999999999999999999999873
No 14
>PRK10965 multicopper oxidase; Provisional
Probab=100.00 E-value=3.2e-64 Score=526.06 Aligned_cols=370 Identities=21% Similarity=0.231 Sum_probs=248.1
Q ss_pred CccccCCCCCCCCCCCcccccCCCCCeEEEEEEeCCCccceeecccccc----cc-ccceeeEEEeCCCCCCCCCCC--C
Q 040938 1 HGVRQLRSGWADGPAYITQCPIQTGQSYVYNFTVTGQRGTLFWHAHISW----LR-ATLYGPIVILPKRHASYPFPQ--P 73 (487)
Q Consensus 1 HGl~~~~~~~~DGv~~vtq~~I~PG~~~~Y~f~~~~~~Gt~wYH~H~~~----~~-~Gl~G~liV~~~~~~~~~~~~--~ 73 (487)
||+++++. |||+| ||+|+||++|+|+|++++++||||||||.++ |. +||+|+|||+++.+...+++. .
T Consensus 104 HGl~~~~~--~DG~p---q~~I~PG~s~~Y~f~~~q~aGT~WYH~H~~g~t~~Qv~~GL~G~lIV~d~~~~~~~lp~~~~ 178 (523)
T PRK10965 104 HGLEVPGE--VDGGP---QGIIAPGGKRTVTFTVDQPAATCWFHPHQHGKTGRQVAMGLAGLVLIEDDESLKLGLPKQWG 178 (523)
T ss_pred ccccCCCc--cCCCC---CCCCCCCCEEEEEeccCCCCceEEEecCCCCCcHHHHhCcCeEEEEEcCccccccCCcccCC
Confidence 99999875 99997 9999999999999998667999999999853 54 799999999998765544443 3
Q ss_pred CcceeEEeeeccccChHHHHHHHh-hcCCCCCCCCeEEEcCcCCCCCCCCCCceeeEEEeCCCEEEEEEEecCCCceEEE
Q 040938 74 FKEVPMIFGEWWKADTEKIINQAL-QTGAAPNISDAFTINGLPGPLYNCSAKDTFKLKVKPGKTYLLRMINAALNDELFF 152 (487)
Q Consensus 74 d~e~~l~l~d~~~~~~~~~~~~~~-~~g~~~~~~d~~lvNG~~~~~~~~~~~~~~~~~v~~G~~~rlR~iN~~~~~~~~~ 152 (487)
..|++|+|+||+++...++..... ........+|.++|||+.. |.+.++ +++|||||||+|+.+.|.|
T Consensus 179 ~~d~~lvlqD~~~~~~g~~~~~~~~~~~~~g~~gd~~lVNG~~~----------p~~~v~-~~~~RlRliNas~~r~~~l 247 (523)
T PRK10965 179 VDDIPVILQDKRFSADGQIDYQLDVMTAAVGWFGDTLLTNGAIY----------PQHAAP-RGWLRLRLLNGCNARSLNL 247 (523)
T ss_pred CceeeEEEEeeeeCCCCceeccccccccccCccCCeEEECCccc----------ceeecC-CCEEEEEEEeccCCceEEE
Confidence 469999999998876554321110 0111234679999999974 667775 5799999999999999999
Q ss_pred EE-cCceEEEEEecCccc-ceeEeeEEEeCCCceEEEEEEecCCCCCcceEEEeccCCCCCC-CCCCcceEEEEEEecCC
Q 040938 153 SI-ANHTLTVVETDAVYV-KPIKTKVVLITPGQTTNVLLKAKHKSPNASFLIAARPYATGPA-SFDNTTTAGVLEYEQPN 229 (487)
Q Consensus 153 ~i-~~h~~~via~DG~~v-~P~~~~~l~l~pG~R~dv~v~~~~~~~~g~~~i~~~~~~~~~~-~~~~~~~~ail~y~~~~ 229 (487)
++ ++|+|+|||+||+++ +|+.++.|.|+|||||||+|++++. ++|.+.+........ .........++++....
T Consensus 248 ~~~dg~~~~vIa~DG~~l~~P~~v~~l~lapGeR~dvlv~~~~~---~~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 324 (523)
T PRK10965 248 ATSDGRPLYVIASDGGLLAEPVKVSELPILMGERFEVLVDTSDG---KAFDLVTLPVSQMGMALAPFDKPLPVLRIQPLL 324 (523)
T ss_pred EEcCCceEEEEEeCCCcccCccEeCeEEECccceEEEEEEcCCC---ceEEEEEecccCcccccccCCCceeEEEEeccC
Confidence 98 799999999999997 8999999999999999999999874 789998865432110 00011134555555431
Q ss_pred CCCCCCCCCCCCCCCCCCCCchhhhhhhhhhhccccCCCCCCCCCCcccEEEEEecccccC-------CCCC-CcccC--
Q 040938 230 NANKNKKLPLLKPALPKFNDTNFAMQFSKKIRSLATAKFPAKVPRKVDRLFFFTVGLGLSP-------CPQN-QTCQG-- 299 (487)
Q Consensus 230 ~~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~p~~~p~~~d~~~~~~~~~~~~~-------~~~~-~~~~~-- 299 (487)
.. . ...+ |. .++.+... +. ......+++.+.+...... .... ....+
T Consensus 325 ~~-~---~~~~-P~---------------~l~~~~~~--~~-~~~~~~r~~~l~~~~~~~~~~m~~~~~~~~~~~~~~~~ 381 (523)
T PRK10965 325 IS-A---SGTL-PD---------------SLASLPAL--PS-LEGLTVRRLQLSMDPRLDMMGMQMLMEKYGDQAMAGMD 381 (523)
T ss_pred cC-C---CCcC-Ch---------------hhccCCCC--Cc-ccccceeEEEEeeccccchhhhhhcccccccccccccc
Confidence 11 0 0011 10 11111100 00 0001123333322110000 0000 00000
Q ss_pred ----------------CC-----CC--c--eeeeecceeccCCChhhhhhhhcCcccCcccCCCCCCCCccccCCCCCCC
Q 040938 300 ----------------PN-----NT--M--LAASINNVSFAQPNIALLQAHFFNKSKGVYTTDFPANPPFKFNYTGTPPS 354 (487)
Q Consensus 300 ----------------~~-----~~--~--~~~~iN~~~~~~p~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 354 (487)
.. +. . ..|+|||++|..
T Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ING~~~~~-------------------------------------- 423 (523)
T PRK10965 382 MDHMMGHMGHGNMDHMNHGAADAGPAFDFHHANKINGKAFDM-------------------------------------- 423 (523)
T ss_pred ccccccccccccccccccccccccccccccccccCCCeECCC--------------------------------------
Confidence 00 00 0 013566655521
Q ss_pred CcccCCCceEEEecCCCEEEEEEeeCCCCCCCCCCeeecCCceEEEEecCCCCCCCCCCCCCCCCCCCccceEEecCCcE
Q 040938 355 NIMVSSGTRAVALPFNASVEVVMQDTSIIGAESHPLHLHGFNFFVVGQGFGNFDPSKDPAKFNLVDPAERNTVGVPSGGW 434 (487)
Q Consensus 355 ~~~~~~~~~~~~v~~g~~v~~~l~n~~~~~~~~HP~HlHg~~f~Vl~~g~g~~~~~~~~~~~n~~~p~~rDtv~v~~~~~ 434 (487)
....+.++.|++++|.|.|.+. .+.|||||||++||||+++... .....+.|||||.|++ +.
T Consensus 424 ------~~~~~~~~~G~~e~w~i~N~~~--~~~Hp~HlHg~~F~Vl~~~g~~---------~~~~~~~wkDTv~v~~-~~ 485 (523)
T PRK10965 424 ------NKPMFAAKKGQYERWVISGVGD--MMLHPFHIHGTQFRILSENGKP---------PAAHRAGWKDTVRVEG-GR 485 (523)
T ss_pred ------CCcceecCCCCEEEEEEEeCCC--CCccCeEEeCcEEEEEEecCCC---------CCccccccccEEEECC-cE
Confidence 1223568899999999999752 3689999999999999996321 1123457999999987 66
Q ss_pred EEEEEEc----CCCeeEEEeecchhhhhccceEEEEEe
Q 040938 435 VAIRFLA----DNPGAWFMHCHLEVHTSWGLKMAWIVN 468 (487)
Q Consensus 435 ~~irf~~----dnpG~w~~HCHi~~H~~~GM~~~~~V~ 468 (487)
++|++++ +++|.|||||||++|||.|||+.|.|.
T Consensus 486 ~~i~~~f~~~~~~~g~~~~HCHiL~Hed~GMM~~~~V~ 523 (523)
T PRK10965 486 SEVLVKFDHDAPKEHAYMAHCHLLEHEDTGMMLGFTVS 523 (523)
T ss_pred EEEEEEecCCCCCCCCEEEEeCchhhhccCccceeEeC
Confidence 6665554 567899999999999999999999883
No 15
>PRK10883 FtsI repressor; Provisional
Probab=100.00 E-value=6e-63 Score=512.16 Aligned_cols=346 Identities=17% Similarity=0.215 Sum_probs=243.1
Q ss_pred CccccCCCCCCCCCCCcccccCCCCCeEEEEEEeCCCccceeecccccc----cc-ccceeeEEEeCCCCCCCCCCC--C
Q 040938 1 HGVRQLRSGWADGPAYITQCPIQTGQSYVYNFTVTGQRGTLFWHAHISW----LR-ATLYGPIVILPKRHASYPFPQ--P 73 (487)
Q Consensus 1 HGl~~~~~~~~DGv~~vtq~~I~PG~~~~Y~f~~~~~~Gt~wYH~H~~~----~~-~Gl~G~liV~~~~~~~~~~~~--~ 73 (487)
||++++++ .+||+ +++|+||++|+|+|++.+++||||||||.++ |. +||+|+|||+++.++..+++. .
T Consensus 104 HGl~~~~~-~~~g~----~~~I~PG~~~~y~f~~~~~aGT~WYH~H~~~~t~~qv~~GL~G~lII~d~~~~~~~~p~~~~ 178 (471)
T PRK10883 104 SGLQVPGP-LMGGP----ARMMSPNADWAPVLPIRQNAATCWYHANTPNRMAQHVYNGLAGMWLVEDEVSKSLPIPNHYG 178 (471)
T ss_pred CCccCCCC-CCCCc----cccCCCCCeEEEEEecCCCceeeEEccCCCCchhhhHhcCCeEEEEEeCCcccccCCcccCC
Confidence 99999986 68887 5789999999999998677999999999876 44 799999999998765555543 3
Q ss_pred CcceeEEeeeccccChHHHHHHHhhcCCCCCCCCeEEEcCcCCCCCCCCCCceeeEEEeCCCEEEEEEEecCCCceEEEE
Q 040938 74 FKEVPMIFGEWWKADTEKIINQALQTGAAPNISDAFTINGLPGPLYNCSAKDTFKLKVKPGKTYLLRMINAALNDELFFS 153 (487)
Q Consensus 74 d~e~~l~l~d~~~~~~~~~~~~~~~~g~~~~~~d~~lvNG~~~~~~~~~~~~~~~~~v~~G~~~rlR~iN~~~~~~~~~~ 153 (487)
..|++|+|+||+++........ ........+|.+||||+.. |.++|++ ++|||||||+|+.+.+.|+
T Consensus 179 ~~d~~l~l~D~~~~~~g~~~~~--~~~~~g~~gd~~lvNG~~~----------p~~~v~~-~~~RlRliNas~~~~~~l~ 245 (471)
T PRK10883 179 VDDFPVIIQDKRLDNFGTPEYN--EPGSGGFVGDTLLVNGVQS----------PYVEVSR-GWVRLRLLNASNARRYQLQ 245 (471)
T ss_pred CcceeEEeeeeeeccCCCcccc--ccccCCccCCeeEECCccC----------CeEEecC-CEEEEEEEEccCCceEEEE
Confidence 4599999999988764432111 1111235689999999974 6899987 5899999999999999999
Q ss_pred E-cCceEEEEEecCccc-ceeEeeEEEeCCCceEEEEEEecCCCCCcceEEEeccCCCCC----CCCCCc---ceEEEEE
Q 040938 154 I-ANHTLTVVETDAVYV-KPIKTKVVLITPGQTTNVLLKAKHKSPNASFLIAARPYATGP----ASFDNT---TTAGVLE 224 (487)
Q Consensus 154 i-~~h~~~via~DG~~v-~P~~~~~l~l~pG~R~dv~v~~~~~~~~g~~~i~~~~~~~~~----~~~~~~---~~~ail~ 224 (487)
| ++|+|+|||+||+++ +|+.++.|.|+|||||||+|++++. +.+.+.+....... ..+... ....+++
T Consensus 246 l~d~~~~~vIa~DGg~~~~P~~~~~l~l~pGeR~dvlVd~~~~---~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (471)
T PRK10883 246 MSDGRPLHVIAGDQGFLPAPVSVKQLSLAPGERREILVDMSNG---DEVSITAGEAAGIVDRLRGFFEPSSILVSTLVLT 322 (471)
T ss_pred EcCCCeEEEEEeCCCcccCCcEeCeEEECCCCeEEEEEECCCC---ceEEEECCCccccccccccccCCccccccceeEE
Confidence 9 899999999998877 8999999999999999999999763 57777653211000 000000 0112233
Q ss_pred EecCCCCCCCCCCCCCCCCCCCCCCchhhhhhhhhhhccccCCCCCCCCCCcccEEEEEecccccCCCCCCcccCCCCCc
Q 040938 225 YEQPNNANKNKKLPLLKPALPKFNDTNFAMQFSKKIRSLATAKFPAKVPRKVDRLFFFTVGLGLSPCPQNQTCQGPNNTM 304 (487)
Q Consensus 225 y~~~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~p~~~p~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (487)
....... +......| .++.. .. ..+....+++.+.++. .
T Consensus 323 ~~~~~~~------~~~~~~~p------------~~l~~---~~---~~~~~~~~~~~~~l~~----------------~- 361 (471)
T PRK10883 323 LRPTGLL------PLVTDNLP------------MRLLP---DE---IMEGSPIRSREISLGD----------------D- 361 (471)
T ss_pred EEccccc------cCCCCcCC------------hhhcC---CC---CCCCCCcceEEEEecC----------------C-
Confidence 3221000 00000000 01110 00 0111223444343321 1
Q ss_pred eeeeecceeccCCChhhhhhhhcCcccCcccCCCCCCCCccccCCCCCCCCcccCCCceEEEecCCCEEEEEEeeCCCCC
Q 040938 305 LAASINNVSFAQPNIALLQAHFFNKSKGVYTTDFPANPPFKFNYTGTPPSNIMVSSGTRAVALPFNASVEVVMQDTSIIG 384 (487)
Q Consensus 305 ~~~~iN~~~~~~p~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~~l~n~~~~~ 384 (487)
.|.|||+.|... ...+.++.|++++|.|.|.
T Consensus 362 -~~~INg~~~~~~--------------------------------------------~~~~~~~~g~~e~W~~~n~---- 392 (471)
T PRK10883 362 -LPGINGALWDMN--------------------------------------------RIDVTAQQGTWERWTVRAD---- 392 (471)
T ss_pred -cCccCCcccCCC--------------------------------------------cceeecCCCCEEEEEEECC----
Confidence 256898877311 1124578899999999883
Q ss_pred CCCCCeeecCCceEEEEecCCCCCCCCCCCCCCCCCCCccceEEecCCcEEEEEEEcCCCe----eEEEeecchhhhhcc
Q 040938 385 AESHPLHLHGFNFFVVGQGFGNFDPSKDPAKFNLVDPAERNTVGVPSGGWVAIRFLADNPG----AWFMHCHLEVHTSWG 460 (487)
Q Consensus 385 ~~~HP~HlHg~~f~Vl~~g~g~~~~~~~~~~~n~~~p~~rDtv~v~~~~~~~irf~~dnpG----~w~~HCHi~~H~~~G 460 (487)
+.|||||||+.|||++++..... ..+..|||||.|+ +.++|+++++++| .|||||||++|||.|
T Consensus 393 -~~HP~HlHg~~FqVl~~~G~~~~---------~~~~gwkDTV~v~--~~v~i~~~f~~~~~~~~~~m~HCHiLeHeD~G 460 (471)
T PRK10883 393 -MPQAFHIEGVMFLIRNVNGAMPF---------PEDRGWKDTVWVD--GQVELLVYFGQPSWAHFPFLFYSQTLEMADRG 460 (471)
T ss_pred -CCcCEeECCccEEEEEecCCCCC---------ccccCcCcEEEcC--CeEEEEEEecCCCCCCCcEEeecccccccccC
Confidence 58999999999999999632111 1123699999995 4699999999887 899999999999999
Q ss_pred ceEEEEEeC
Q 040938 461 LKMAWIVND 469 (487)
Q Consensus 461 M~~~~~V~~ 469 (487)
||+.|.|.+
T Consensus 461 MM~~~~V~~ 469 (471)
T PRK10883 461 SIGQLLVNP 469 (471)
T ss_pred CccCeEEec
Confidence 999999965
No 16
>COG2132 SufI Putative multicopper oxidases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=2.3e-51 Score=427.52 Aligned_cols=356 Identities=23% Similarity=0.333 Sum_probs=246.7
Q ss_pred CccccCCCCCCCCCCCcccccCCCCCeEEEEEEeCCCccceeecccccccc-ccceeeEEEeCCCCCCCCCCCCCcceeE
Q 040938 1 HGVRQLRSGWADGPAYITQCPIQTGQSYVYNFTVTGQRGTLFWHAHISWLR-ATLYGPIVILPKRHASYPFPQPFKEVPM 79 (487)
Q Consensus 1 HGl~~~~~~~~DGv~~vtq~~I~PG~~~~Y~f~~~~~~Gt~wYH~H~~~~~-~Gl~G~liV~~~~~~~~~~~~~d~e~~l 79 (487)
||+..++ .|||++..+|+++.||++++|.|+. +++||||||+|.++|. +||+|++||+++.+.+. .+|.+.++
T Consensus 91 HG~~~p~--~~dG~~~~~~~~~~~~~~~~y~f~~-~~~gT~wyh~H~~~Q~~~Gl~G~~II~~~~~~~~---~~d~~~~i 164 (451)
T COG2132 91 HGLPVPG--EMDGVPPLTQIPPGPGETPTYTFTQ-DVPGTYWYHPHTHGQVYDGLAGALIIEDENSEPL---GVDDEPVI 164 (451)
T ss_pred cCcccCc--cccCCCcccccCCCCCCcEEEeecC-CCCcceEeccCCCchhhcccceeEEEeCCCCCCC---CCCceEEE
Confidence 8988884 5999999999999999999999997 6677999999999997 89999999999976543 45778888
Q ss_pred EeeeccccChHHHHHHHhhcCCCCCCCCeEEEcCcCCCCCCCCCCceeeEEEeCCCEEEEEEEecCCCceEEEEEcCceE
Q 040938 80 IFGEWWKADTEKIINQALQTGAAPNISDAFTINGLPGPLYNCSAKDTFKLKVKPGKTYLLRMINAALNDELFFSIANHTL 159 (487)
Q Consensus 80 ~l~d~~~~~~~~~~~~~~~~g~~~~~~d~~lvNG~~~~~~~~~~~~~~~~~v~~G~~~rlR~iN~~~~~~~~~~i~~h~~ 159 (487)
++.+|+.......... ........++..+|||+.. +.+.+ ++++||||++|+++.+.+.+++.+++|
T Consensus 165 ~~~~~~~~~~~~~~~~--~~~~~~~~g~~~~vnG~~~----------p~~~~-~~g~~rlRl~n~~~~~~~~~~~~~~~~ 231 (451)
T COG2132 165 LQDDWLDEDGTDLYQE--GPAMGGFPGDTLLVNGAIL----------PFKAV-PGGVVRLRLLNAGNARTYHLALGGGPL 231 (451)
T ss_pred EEeeeecCCCCccccC--CccccCCCCCeEEECCCcc----------ceeec-CCCeEEEEEEecCCceEEEEEecCceE
Confidence 8888877655443222 1222335679999999753 44555 456799999999988999999999999
Q ss_pred EEEEecCcccceeEeeEEEeCCCceEEEEEEecCCCCCcceEEEeccCCCCCCCCCCcceEEEEEEecCCCCCCCCCCCC
Q 040938 160 TVVETDAVYVKPIKTKVVLITPGQTTNVLLKAKHKSPNASFLIAARPYATGPASFDNTTTAGVLEYEQPNNANKNKKLPL 239 (487)
Q Consensus 160 ~via~DG~~v~P~~~~~l~l~pG~R~dv~v~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~~~~ 239 (487)
+||++||.+++|..++.+.|+|||||||+|++... +.+.+.+.. .+.. + ...+......... . +.+.
T Consensus 232 ~Vi~~DG~~v~~~~~d~~~l~p~er~~v~v~~~~~---~~~~l~~~~-~~~~---~--~~~~~~~~~~~~~-~---~~~~ 298 (451)
T COG2132 232 TVIAVDGGPLPPVSVDELYLAPGERYEVLVDMNDG---GAVTLTALG-EDMP---D--TLKGFRAPNPILT-P---SYPV 298 (451)
T ss_pred EEEEeCCcCcCceeeeeEEecCcceEEEEEEcCCC---CeEEEEecc-ccCC---c--eeeeeeccccccc-c---cccc
Confidence 99999999998899999999999999999999984 788888765 1110 1 1111111111000 0 0000
Q ss_pred CCCCC-CCCCCchhhhhhhhhhhccccCCCCCCCCC-CcccEEEEEecccccCCCCCCcccCCCCCceeeeecceeccCC
Q 040938 240 LKPAL-PKFNDTNFAMQFSKKIRSLATAKFPAKVPR-KVDRLFFFTVGLGLSPCPQNQTCQGPNNTMLAASINNVSFAQP 317 (487)
Q Consensus 240 ~~p~~-p~~~~~~~~~~~~~~~~~~~~~~~p~~~p~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iN~~~~~~p 317 (487)
+++.. ....+. . ......+...... .+. ..+....+.. .-..+.|.+|++.|..
T Consensus 299 ~~~~~~~~~~d~--~---~~~~~~~~~~~~~--~~~~~~~~~~~l~~----------------~~~~~~~~~n~~~~~~- 354 (451)
T COG2132 299 LNGRVGAPTGDM--A---DHAPVGLLVTILV--EPGPNRDTDFHLIG----------------GIGGYVWAINGKAFDD- 354 (451)
T ss_pred ccccccCCCcch--h---hccccccchhhcC--CCcccccccchhhc----------------ccccccccccCccCCC-
Confidence 10000 000000 0 0000000000000 000 0001000000 0012245555544310
Q ss_pred ChhhhhhhhcCcccCcccCCCCCCCCccccCCCCCCCCcccCCCceEEEecCCCEEEEEEeeCCCCCCCCCCeeecCCce
Q 040938 318 NIALLQAHFFNKSKGVYTTDFPANPPFKFNYTGTPPSNIMVSSGTRAVALPFNASVEVVMQDTSIIGAESHPLHLHGFNF 397 (487)
Q Consensus 318 ~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~~l~n~~~~~~~~HP~HlHg~~f 397 (487)
....+.++.|++++|+|.|.. .+.||||+||+.|
T Consensus 355 -------------------------------------------~~~~~~~~~G~~~~~~i~n~~---~~~HP~HlHg~~F 388 (451)
T COG2132 355 -------------------------------------------NRVTLIAKAGTRERWVLTNDT---PMPHPFHLHGHFF 388 (451)
T ss_pred -------------------------------------------CcCceeecCCCEEEEEEECCC---CCccCeEEcCceE
Confidence 123467889999999999975 4899999999999
Q ss_pred EEEEecCCCCCCCCCCCCCCCCCCCccceEEecCCcEEEEEEEcCCCeeEEEeecchhhhhccceEEEEEe
Q 040938 398 FVVGQGFGNFDPSKDPAKFNLVDPAERNTVGVPSGGWVAIRFLADNPGAWFMHCHLEVHTSWGLKMAWIVN 468 (487)
Q Consensus 398 ~Vl~~g~g~~~~~~~~~~~n~~~p~~rDtv~v~~~~~~~irf~~dnpG~w~~HCHi~~H~~~GM~~~~~V~ 468 (487)
+|++.+ . ......+.||||+.+.+++.++|+|.+++||.|+||||+++|++.|||..+.|.
T Consensus 389 ~v~~~~-~---------~~~~~~~~~kDTv~v~~~~~~~v~~~a~~~g~~~~HCH~l~H~~~Gm~~~~~v~ 449 (451)
T COG2132 389 QVLSGD-A---------PAPGAAPGWKDTVLVAPGERLLVRFDADYPGPWMFHCHILEHEDNGMMGQFGVV 449 (451)
T ss_pred EEEecC-C---------CcccccCccceEEEeCCCeEEEEEEeCCCCCceEEeccchhHhhcCCeeEEEec
Confidence 999986 1 122245679999999999999999999999999999999999999999999885
No 17
>TIGR02376 Cu_nitrite_red nitrite reductase, copper-containing. This family consists of copper-type nitrite reductase. It reduces nitrite to nitric oxide, the first step in denitrification.
Probab=100.00 E-value=2.9e-37 Score=304.17 Aligned_cols=208 Identities=16% Similarity=0.158 Sum_probs=164.0
Q ss_pred CccccCCCCCCCCCCCcccccCCCCCeEEEEEEeCCCccceeecccccc----cc-ccceeeEEEeCCCCCCCCCCCCCc
Q 040938 1 HGVRQLRSGWADGPAYITQCPIQTGQSYVYNFTVTGQRGTLFWHAHISW----LR-ATLYGPIVILPKRHASYPFPQPFK 75 (487)
Q Consensus 1 HGl~~~~~~~~DGv~~vtq~~I~PG~~~~Y~f~~~~~~Gt~wYH~H~~~----~~-~Gl~G~liV~~~~~~~~~~~~~d~ 75 (487)
|+++..+..++||+++++| |+||++|+|+|++ +++||||||||.++ |. +||+|+|||++++.. +..|+
T Consensus 83 h~~h~H~~~~~dg~~~~~~--I~PG~t~ty~F~~-~~~Gty~YH~H~~~~~~~q~~~Gl~G~liV~~~~~~----~~~d~ 155 (311)
T TIGR02376 83 HNVDFHAATGALGGAALTQ--VNPGETATLRFKA-TRPGAFVYHCAPPGMVPWHVVSGMNGAIMVLPREGL----PEYDK 155 (311)
T ss_pred eeeeecCCCccCCCCccee--ECCCCeEEEEEEc-CCCEEEEEEcCCCCchhHHhhcCcceEEEeeccCCC----cCcce
Confidence 5566655567999999988 9999999999997 78999999999654 54 799999999987532 25689
Q ss_pred ceeEEeeeccccChHHHHHHHhhc-C-CCCCCCCeEEEcCcCCCCCCCCCCceeeEEEeCCCEEEEEEEecCCCceEEEE
Q 040938 76 EVPMIFGEWWKADTEKIINQALQT-G-AAPNISDAFTINGLPGPLYNCSAKDTFKLKVKPGKTYLLRMINAALNDELFFS 153 (487)
Q Consensus 76 e~~l~l~d~~~~~~~~~~~~~~~~-g-~~~~~~d~~lvNG~~~~~~~~~~~~~~~~~v~~G~~~rlR~iN~~~~~~~~~~ 153 (487)
|++|+++||+++............ + .....++.++|||+.+++ .+.+++++|+++||||||++..+.+.|+
T Consensus 156 e~~l~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iNG~~~~~-------~~~~~v~~G~~~RlRiiNa~~~~~~~~~ 228 (311)
T TIGR02376 156 EYYIGESDLYTPKDEGEGGAYEDDVAAMRTLTPTHVVFNGAVGAL-------TGDNALTAGVGERVLFVHSQPNRDSRPH 228 (311)
T ss_pred eEEEeeeeEeccccccccccccchHHHHhcCCCCEEEECCccCCC-------CCCcccccCCcEEEEEEcCCCCCCCCCe
Confidence 999999999986543210000000 0 011356899999996532 2467999999999999999999999999
Q ss_pred EcCceEEEEEecCccccee--EeeEEEeCCCceEEEEEEecCCCCCcceEEEeccCCCCCCCCCCcceEEEEEEecCC
Q 040938 154 IANHTLTVVETDAVYVKPI--KTKVVLITPGQTTNVLLKAKHKSPNASFLIAARPYATGPASFDNTTTAGVLEYEQPN 229 (487)
Q Consensus 154 i~~h~~~via~DG~~v~P~--~~~~l~l~pG~R~dv~v~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~ail~y~~~~ 229 (487)
+.++.+++|+.||+++.|. .++++.|+||||+||+|+++++ |.|++++..+.... +....|+|+|++..
T Consensus 229 ~~g~~~~~v~~DG~~~~~~~~~~~~~~i~PG~R~dv~v~~~~p---G~y~~~~~~~~~~~----~~g~~~~i~~~g~~ 299 (311)
T TIGR02376 229 LIGGHGDYVWVTGKFANPPNRDVETWFIPGGSAAAALYTFEQP---GVYAYVDHNLIEAF----EKGAAAQVKVEGAW 299 (311)
T ss_pred EecCCceEEEECCcccCCCCCCcceEEECCCceEEEEEEeCCC---eEEEEECcHHHHHH----hCCCEEEEEECCCC
Confidence 9999999999999999753 4899999999999999999985 89999998654321 23477999998753
No 18
>PF00394 Cu-oxidase: Multicopper oxidase; InterPro: IPR001117 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 1 (blue) domains. These domains are also present in proteins that have lost the ability to bind copper.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1RZP_A 2AVF_D 1NIA_A 1KCB_A 2NRD_A 1NIB_A 2BW4_A 1RZQ_C 2BWD_A 2BWI_A ....
Probab=99.96 E-value=2.4e-29 Score=225.28 Aligned_cols=149 Identities=31% Similarity=0.592 Sum_probs=120.8
Q ss_pred cceeEEeeeccccChHHHHHHHhhcC----CCCCCCCeEEEcCcCCCCCCCC-----CCceeeEEEeCCCEEEEEEEecC
Q 040938 75 KEVPMIFGEWWKADTEKIINQALQTG----AAPNISDAFTINGLPGPLYNCS-----AKDTFKLKVKPGKTYLLRMINAA 145 (487)
Q Consensus 75 ~e~~l~l~d~~~~~~~~~~~~~~~~g----~~~~~~d~~lvNG~~~~~~~~~-----~~~~~~~~v~~G~~~rlR~iN~~ 145 (487)
+|++|+|+||+|+....+.......+ ..+.++++++|||+.. +.|+ ....+.++|++|++|||||||+|
T Consensus 1 ~e~~i~l~DW~~~~~~~~~~~~~~~~~~~~~~~~~~d~~liNG~~~--~~~~~~~~~~~~~~~~~v~~g~~~rlRliNa~ 78 (159)
T PF00394_consen 1 EEYVIMLSDWYHDDSDDLLQQYFAPGKGPMGMPPIPDSILINGKGR--FDCSSADYTGGEPPVIKVKPGERYRLRLINAG 78 (159)
T ss_dssp GGGEEEEEEETSSCTTTHBH-HSSCHHHSHSCTSSCSEEEETTBTC--BTTCTTGSTTSTSGEEEEETTTEEEEEEEEES
T ss_pred CeEEEEEeECCCCCHHHhhhhhccccccccCCCcCCcEEEECCccc--cccccccccccccceEEEcCCcEEEEEEEecc
Confidence 48999999999988877665444332 2367899999999975 4554 24578999999999999999999
Q ss_pred CCceEEEEEcCceEEEEEecCcccceeEeeEEEeCCCceEEEEEEecCCCCCcceEEEeccCCCCCCCCCCcceEEEEEE
Q 040938 146 LNDELFFSIANHTLTVVETDAVYVKPIKTKVVLITPGQTTNVLLKAKHKSPNASFLIAARPYATGPASFDNTTTAGVLEY 225 (487)
Q Consensus 146 ~~~~~~~~i~~h~~~via~DG~~v~P~~~~~l~l~pG~R~dv~v~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~ail~y 225 (487)
+.+.+.|+|+||+|+|||+||.+++|+.++.|.|++||||||+|++++++ |+|+|++................|+|+|
T Consensus 79 ~~~~~~~~i~gh~~~Via~DG~~v~p~~~~~l~l~~G~R~dvlv~~~~~~--g~y~i~~~~~~~~~~~~~~~~~~aiL~Y 156 (159)
T PF00394_consen 79 ASTSFNFSIDGHPMTVIAADGVPVEPYKVDTLVLAPGQRYDVLVTADQPP--GNYWIRASYQHDSINDPQNGNALAILRY 156 (159)
T ss_dssp SS-BEEEEETTBCEEEEEETTEEEEEEEESBEEE-TTEEEEEEEEECSCS--SEEEEEEEESSSSSHSHGGGTTEEEEEE
T ss_pred CCeeEEEEeeccceeEeeeccccccccccceEEeeCCeEEEEEEEeCCCC--CeEEEEEecccCCCccCCCcEEEEEEEE
Confidence 99999999999999999999999999999999999999999999999854 9999999632221112345678999999
Q ss_pred ec
Q 040938 226 EQ 227 (487)
Q Consensus 226 ~~ 227 (487)
.+
T Consensus 157 ~~ 158 (159)
T PF00394_consen 157 DG 158 (159)
T ss_dssp TT
T ss_pred CC
Confidence 75
No 19
>PF07731 Cu-oxidase_2: Multicopper oxidase; InterPro: IPR011706 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 2 domains.; GO: 0005507 copper ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GDC_C 3ZX1_A 2YAH_A 2YAR_A 2YAQ_A 2YAO_A 2YAM_A 2YAF_A 2YAP_A 2XU9_A ....
Probab=99.96 E-value=2.2e-29 Score=220.66 Aligned_cols=107 Identities=41% Similarity=0.821 Sum_probs=94.9
Q ss_pred CCCceEEEecCCCEEEEEEeeCCCCCCCCCCeeecCCceEEEEecCCCCCCCCCCCCCCCCCCCccceEEecCCcEEEEE
Q 040938 359 SSGTRAVALPFNASVEVVMQDTSIIGAESHPLHLHGFNFFVVGQGFGNFDPSKDPAKFNLVDPAERNTVGVPSGGWVAIR 438 (487)
Q Consensus 359 ~~~~~~~~v~~g~~v~~~l~n~~~~~~~~HP~HlHg~~f~Vl~~g~g~~~~~~~~~~~n~~~p~~rDtv~v~~~~~~~ir 438 (487)
..+..++.++.|++|+|+|.|.+ ...|||||||++|+|++++.+.++.. ....+++.+|.||||+.|+++++++||
T Consensus 30 ~~~~~~~~~~~g~~v~~~l~N~~---~~~Hp~HlHG~~F~vl~~~~~~~~~~-~~~~~~~~~~~~~DTv~v~~~~~~~i~ 105 (138)
T PF07731_consen 30 FGNTPVIEVKNGDVVEIVLQNNG---SMPHPFHLHGHSFQVLGRGGGPWNPD-DTQSYNPENPGWRDTVLVPPGGWVVIR 105 (138)
T ss_dssp SSTTSEEEEETTSEEEEEEEECT---TSSEEEEETTSEEEEEEETTEESTTH-CGGCCCSSSSSEESEEEEETTEEEEEE
T ss_pred CCCcceEEEeCCCEEEEEEECCC---CCccceEEEeeEEEeeecCCcccccc-cccccccccCcccccccccceeEEEEE
Confidence 45678999999999999999965 47999999999999999987665433 345678889999999999999999999
Q ss_pred EEcCCCeeEEEeecchhhhhccceEEEEEeC
Q 040938 439 FLADNPGAWFMHCHLEVHTSWGLKMAWIVND 469 (487)
Q Consensus 439 f~~dnpG~w~~HCHi~~H~~~GM~~~~~V~~ 469 (487)
|++||||.|+||||+++|++.|||++|.|.+
T Consensus 106 ~~~~~~G~w~~HCHi~~H~~~GM~~~~~v~~ 136 (138)
T PF07731_consen 106 FRADNPGPWLFHCHILEHEDNGMMAVFVVGP 136 (138)
T ss_dssp EEETSTEEEEEEESSHHHHHTT-EEEEEECH
T ss_pred EEeecceEEEEEEchHHHHhCCCeEEEEEcC
Confidence 9999999999999999999999999999864
No 20
>PF07732 Cu-oxidase_3: Multicopper oxidase; InterPro: IPR011707 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 3 (or coupled binuclear) domains. ; GO: 0005507 copper ion binding; PDB: 2QT6_B 3KW7_B 2R7E_A 3CDZ_A 1SDD_A 3G5W_D 3UAC_A 2YXV_A 3OD3_A 3NSY_A ....
Probab=99.84 E-value=1.2e-21 Score=165.35 Aligned_cols=64 Identities=42% Similarity=0.841 Sum_probs=59.4
Q ss_pred CccccCCCCCCCCCCCcccccCCCCCeEEEEEEeCCCccceeecccccccc-ccceeeEEEeCCC
Q 040938 1 HGVRQLRSGWADGPAYITQCPIQTGQSYVYNFTVTGQRGTLFWHAHISWLR-ATLYGPIVILPKR 64 (487)
Q Consensus 1 HGl~~~~~~~~DGv~~vtq~~I~PG~~~~Y~f~~~~~~Gt~wYH~H~~~~~-~Gl~G~liV~~~~ 64 (487)
||+++++++||||+++++||+|+||++|+|+|++++++||||||||.+.+. +||+|+|||++++
T Consensus 53 HG~~~~~~~~~DG~~~~~~~~i~pG~~~~Y~~~~~~~~Gt~wYH~H~~~~~~~GL~G~~iV~~~~ 117 (117)
T PF07732_consen 53 HGLHQPPSPWMDGVPGVTQCPIAPGESFTYEFTANQQAGTYWYHSHVHGQQVMGLYGAIIVEPPE 117 (117)
T ss_dssp ETSBSTTGGGGSGGTTTSGSSBSTTEEEEEEEEESSCSEEEEEEECSTTHHHTTEEEEEEEE-TT
T ss_pred ceeeeeeeeecCCcccccceeEEeecceeeeEeeeccccceeEeeCCCchhcCcCEEEEEEcCCC
Confidence 899999999999999999999999999999999966699999999999875 8999999999873
No 21
>TIGR02376 Cu_nitrite_red nitrite reductase, copper-containing. This family consists of copper-type nitrite reductase. It reduces nitrite to nitric oxide, the first step in denitrification.
Probab=99.56 E-value=8e-13 Score=130.75 Aligned_cols=248 Identities=19% Similarity=0.163 Sum_probs=149.8
Q ss_pred CCeEEEcCcCCCCCCCCCCceeeEEEeCCCEEEEEEEecCCC-ceEEEEEcCceEEEEEecCcccceeEeeEEEeCCCce
Q 040938 106 SDAFTINGLPGPLYNCSAKDTFKLKVKPGKTYLLRMINAALN-DELFFSIANHTLTVVETDAVYVKPIKTKVVLITPGQT 184 (487)
Q Consensus 106 ~d~~lvNG~~~~~~~~~~~~~~~~~v~~G~~~rlR~iN~~~~-~~~~~~i~~h~~~via~DG~~v~P~~~~~l~l~pG~R 184 (487)
.+..++||+.. .|.|++++|++++++|.|.... ....++++++. +.||... ...|.||++
T Consensus 47 ~~~~~~nG~~p---------GP~irv~~Gd~v~v~v~N~~~~~~~h~~h~H~~~----~~dg~~~------~~~I~PG~t 107 (311)
T TIGR02376 47 YQAMTFDGSVP---------GPLIRVHEGDYVELTLINPPTNTMPHNVDFHAAT----GALGGAA------LTQVNPGET 107 (311)
T ss_pred EEEEEECCccc---------CceEEEECCCEEEEEEEeCCCCCCceeeeecCCC----ccCCCCc------ceeECCCCe
Confidence 35788999852 4899999999999999998632 35677887763 4577531 223899999
Q ss_pred EEEEEEecCCCCCcceEEEeccCCCCCCCCCCcceEEEEEEecCCCCCCCCCCCCCCCCCCCCCCchhhhhhhhhhhccc
Q 040938 185 TNVLLKAKHKSPNASFLIAARPYATGPASFDNTTTAGVLEYEQPNNANKNKKLPLLKPALPKFNDTNFAMQFSKKIRSLA 264 (487)
Q Consensus 185 ~dv~v~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~~~ 264 (487)
+.+.++++++ |.||..++........ -.....+.|....... .+.. |. ++.--++...
T Consensus 108 ~ty~F~~~~~---Gty~YH~H~~~~~~~q-~~~Gl~G~liV~~~~~------~~~~--------d~----e~~l~l~d~~ 165 (311)
T TIGR02376 108 ATLRFKATRP---GAFVYHCAPPGMVPWH-VVSGMNGAIMVLPREG------LPEY--------DK----EYYIGESDLY 165 (311)
T ss_pred EEEEEEcCCC---EEEEEEcCCCCchhHH-hhcCcceEEEeeccCC------CcCc--------ce----eEEEeeeeEe
Confidence 9999998765 9999999842110000 0112334444433210 0000 00 0000000000
Q ss_pred cCCCCCCCCCCcccEEEEEecccccCCCCCCcccCCCCCceeeeecceeccCCChhhhhhhhcCcccCcccCCCCCCCCc
Q 040938 265 TAKFPAKVPRKVDRLFFFTVGLGLSPCPQNQTCQGPNNTMLAASINNVSFAQPNIALLQAHFFNKSKGVYTTDFPANPPF 344 (487)
Q Consensus 265 ~~~~p~~~p~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iN~~~~~~p~~~~l~~~~~~~~~~~~~~~~~~~~p~ 344 (487)
... .......+ ....... ....+ -...+||+....
T Consensus 166 ~~~-----~~~~~~~~--~~~~~~~--------~~~~~--~~~~iNG~~~~~---------------------------- 200 (311)
T TIGR02376 166 TPK-----DEGEGGAY--EDDVAAM--------RTLTP--THVVFNGAVGAL---------------------------- 200 (311)
T ss_pred ccc-----cccccccc--cchHHHH--------hcCCC--CEEEECCccCCC----------------------------
Confidence 000 00000000 0000000 00000 124566543210
Q ss_pred cccCCCCCCCCcccCCCceEEEecCCCEEEEEEeeCCCCCCCCCCeeecCCceEEEEecCCCCCCCCCCCCCCCCCCC-c
Q 040938 345 KFNYTGTPPSNIMVSSGTRAVALPFNASVEVVMQDTSIIGAESHPLHLHGFNFFVVGQGFGNFDPSKDPAKFNLVDPA-E 423 (487)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~~l~n~~~~~~~~HP~HlHg~~f~Vl~~g~g~~~~~~~~~~~n~~~p~-~ 423 (487)
...+.++.|++++|.|.|.+. ...+.||++|++|.++... |.+- ..+. .
T Consensus 201 -----------------~~~~~v~~G~~~RlRiiNa~~--~~~~~~~~~g~~~~~v~~D-G~~~----------~~~~~~ 250 (311)
T TIGR02376 201 -----------------TGDNALTAGVGERVLFVHSQP--NRDSRPHLIGGHGDYVWVT-GKFA----------NPPNRD 250 (311)
T ss_pred -----------------CCCcccccCCcEEEEEEcCCC--CCCCCCeEecCCceEEEEC-Cccc----------CCCCCC
Confidence 011356789999999999763 4678999999999999984 3211 1122 3
Q ss_pred cceEEecCCcEEEEEEEcCCCeeEEEeecchhhh-hccceEEEEEeC
Q 040938 424 RNTVGVPSGGWVAIRFLADNPGAWFMHCHLEVHT-SWGLKMAWIVND 469 (487)
Q Consensus 424 rDtv~v~~~~~~~irf~~dnpG~w~~HCHi~~H~-~~GM~~~~~V~~ 469 (487)
.|++.|.||+...|.++++.||.|++|||...|. ..||++.+.|+.
T Consensus 251 ~~~~~i~PG~R~dv~v~~~~pG~y~~~~~~~~~~~~~g~~~~i~~~g 297 (311)
T TIGR02376 251 VETWFIPGGSAAAALYTFEQPGVYAYVDHNLIEAFEKGAAAQVKVEG 297 (311)
T ss_pred cceEEECCCceEEEEEEeCCCeEEEEECcHHHHHHhCCCEEEEEECC
Confidence 6899999999999999999999999999999997 889999998853
No 22
>TIGR03095 rusti_cyanin rusticyanin. Rusticyanin is a blue copper protein, described in an obligate acidophilic chemolithoautroph, Acidithiobacillus ferrooxidans, as an electron transfer protein. It can constitute up to 5 percent of protein in cells grown on Fe(II) and is thought to be part of an electron chain for Fe(II) oxidation, with two c-type cytochromes, an aa3-type cytochrome oxidase, and 02 as terminal electron acceptor. It is rather closely related to sulfocyanin (TIGR03094).
Probab=99.35 E-value=5.1e-13 Score=117.06 Aligned_cols=56 Identities=18% Similarity=0.417 Sum_probs=44.9
Q ss_pred cccCCCCC-----CCCCCCcccccCCCC--------CeEEEEEEeCCCccceeecccccccc-ccceeeEEEe
Q 040938 3 VRQLRSGW-----ADGPAYITQCPIQTG--------QSYVYNFTVTGQRGTLFWHAHISWLR-ATLYGPIVIL 61 (487)
Q Consensus 3 l~~~~~~~-----~DGv~~vtq~~I~PG--------~~~~Y~f~~~~~~Gt~wYH~H~~~~~-~Gl~G~liV~ 61 (487)
|++.+.+| |||+++++||+|.|+ .+|+|+| .++||||||||..+++ +||+|+|||+
T Consensus 79 I~~~g~~~~~~p~mdG~~~~~~~~i~p~~~~g~~~~~~~tf~f---~~aGtywyhC~~pgH~~~GM~G~iiV~ 148 (148)
T TIGR03095 79 ISKRGPPYPYMPGMDGLGFVAGTGFLPPPKSGKFGYTDFTYHF---STAGTYWYLCTYPGHAENGMYGKIVVK 148 (148)
T ss_pred eecCCCccccccccCCCCccccCcccCCCCCCccceeEEEEEC---CCCeEEEEEcCChhHHHCCCEEEEEEC
Confidence 34455555 999999999999884 3445555 4799999999998888 6999999995
No 23
>PLN02604 oxidoreductase
Probab=99.09 E-value=7.1e-10 Score=118.61 Aligned_cols=91 Identities=21% Similarity=0.331 Sum_probs=71.2
Q ss_pred EEEecCCCEEEEEEeeCCCCCCCCCCeeecCCceEEEEecCCCCCCCCCCCCCCCCCCCccceEEecCCcEEEEEEEcCC
Q 040938 364 AVALPFNASVEVVMQDTSIIGAESHPLHLHGFNFFVVGQGFGNFDPSKDPAKFNLVDPAERNTVGVPSGGWVAIRFLADN 443 (487)
Q Consensus 364 ~~~v~~g~~v~~~l~n~~~~~~~~HP~HlHg~~f~Vl~~g~g~~~~~~~~~~~n~~~p~~rDtv~v~~~~~~~irf~~dn 443 (487)
++.++.|++|++.+.|.. ....|+||+||... .+.. -.+. ........|+||+..+++|++++
T Consensus 56 ~i~~~~Gd~v~v~v~N~l--~~~~~~iH~HG~~~--~~~~--~~DG-----------~~~~tq~~i~pg~s~~y~f~~~~ 118 (566)
T PLN02604 56 TILAQQGDTVIVELKNSL--LTENVAIHWHGIRQ--IGTP--WFDG-----------TEGVTQCPILPGETFTYEFVVDR 118 (566)
T ss_pred cEEEECCCEEEEEEEeCC--CCCCCCEEeCCCCC--CCCc--cccC-----------CCccccCccCCCCeEEEEEEcCC
Confidence 567889999999999974 24679999999942 1110 0010 01123457899999999999999
Q ss_pred CeeEEEeecchhhhhccceEEEEEeCCC
Q 040938 444 PGAWFMHCHLEVHTSWGLKMAWIVNDGK 471 (487)
Q Consensus 444 pG~w~~HCHi~~H~~~GM~~~~~V~~~~ 471 (487)
+|.|.||||...|.+.||++.+.|+++.
T Consensus 119 ~Gt~wyH~H~~~q~~~Gl~G~liV~~~~ 146 (566)
T PLN02604 119 PGTYLYHAHYGMQREAGLYGSIRVSLPR 146 (566)
T ss_pred CEEEEEeeCcHHHHhCCCeEEEEEEecC
Confidence 9999999999999999999999998764
No 24
>PF07732 Cu-oxidase_3: Multicopper oxidase; InterPro: IPR011707 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 3 (or coupled binuclear) domains. ; GO: 0005507 copper ion binding; PDB: 2QT6_B 3KW7_B 2R7E_A 3CDZ_A 1SDD_A 3G5W_D 3UAC_A 2YXV_A 3OD3_A 3NSY_A ....
Probab=98.87 E-value=9.3e-09 Score=86.79 Aligned_cols=91 Identities=20% Similarity=0.291 Sum_probs=68.7
Q ss_pred ceEEEecCCCEEEEEEeeCCCCCCCCCCeeecCCceEEEEecCCCCCCCCCCCCCCCCCCCccceEEecCCcEEEEEEEc
Q 040938 362 TRAVALPFNASVEVVMQDTSIIGAESHPLHLHGFNFFVVGQGFGNFDPSKDPAKFNLVDPAERNTVGVPSGGWVAIRFLA 441 (487)
Q Consensus 362 ~~~~~v~~g~~v~~~l~n~~~~~~~~HP~HlHg~~f~Vl~~g~g~~~~~~~~~~~n~~~p~~rDtv~v~~~~~~~irf~~ 441 (487)
.+++.++.|+.|++.+.|.. ..++.+|+||...---...+|. +.. -.-.|.||+..+.+|++
T Consensus 25 GPtI~v~~Gd~v~i~~~N~l---~~~~siH~HG~~~~~~~~~DG~--------------~~~-~~~~i~pG~~~~Y~~~~ 86 (117)
T PF07732_consen 25 GPTIRVREGDTVRITVTNNL---DEPTSIHWHGLHQPPSPWMDGV--------------PGV-TQCPIAPGESFTYEFTA 86 (117)
T ss_dssp EEEEEEETTEEEEEEEEEES---SSGBSEEEETSBSTTGGGGSGG--------------TTT-SGSSBSTTEEEEEEEEE
T ss_pred CCEEEEEcCCeeEEEEEecc---ccccccccceeeeeeeeecCCc--------------ccc-cceeEEeecceeeeEee
Confidence 45789999999999999975 4789999999653100000110 000 01358899999999999
Q ss_pred CC-CeeEEEeecchhhhhccceEEEEEeCC
Q 040938 442 DN-PGAWFMHCHLEVHTSWGLKMAWIVNDG 470 (487)
Q Consensus 442 dn-pG~w~~HCHi~~H~~~GM~~~~~V~~~ 470 (487)
+. +|.|.||||...|...||.+.|.|++.
T Consensus 87 ~~~~Gt~wYH~H~~~~~~~GL~G~~iV~~~ 116 (117)
T PF07732_consen 87 NQQAGTYWYHSHVHGQQVMGLYGAIIVEPP 116 (117)
T ss_dssp SSCSEEEEEEECSTTHHHTTEEEEEEEE-T
T ss_pred eccccceeEeeCCCchhcCcCEEEEEEcCC
Confidence 88 999999999999988999999999865
No 25
>TIGR03389 laccase laccase, plant. Members of this protein family include the copper-containing enzyme laccase (EC 1.10.3.2), often several from a single plant species, and additional, uncharacterized, closely related plant proteins termed laccase-like multicopper oxidases. This protein family shows considerable sequence similarity to the L-ascorbate oxidase (EC 1.10.3.3) family. Laccases are enzymes of rather broad specificity, and classification of all proteins scoring about the trusted cutoff of this model as laccases may be appropriate.
Probab=98.73 E-value=1.7e-06 Score=92.42 Aligned_cols=236 Identities=16% Similarity=0.137 Sum_probs=138.4
Q ss_pred CeEEEcCcCCCCCCCCCCceeeEEEeCCCEEEEEEEecCCCceEEEEEcCceEEEE-EecCcccceeEeeEEEeCCCceE
Q 040938 107 DAFTINGLPGPLYNCSAKDTFKLKVKPGKTYLLRMINAALNDELFFSIANHTLTVV-ETDAVYVKPIKTKVVLITPGQTT 185 (487)
Q Consensus 107 d~~lvNG~~~~~~~~~~~~~~~~~v~~G~~~rlR~iN~~~~~~~~~~i~~h~~~vi-a~DG~~v~P~~~~~l~l~pG~R~ 185 (487)
..+++||+.. .|.|+++.|+++++++.|--.. ...+|.+|....-- ..||.+ .+..-.|.||+.+
T Consensus 23 ~~~~~NG~~P---------GP~i~~~~GD~v~v~v~N~l~~-~tsiHwHGl~q~~~~~~DGv~----~vTq~pI~PG~s~ 88 (539)
T TIGR03389 23 SILTVNGKFP---------GPTLYAREGDTVIVNVTNNVQY-NVTIHWHGVRQLRNGWADGPA----YITQCPIQPGQSY 88 (539)
T ss_pred EEEEECCccc---------CCEEEEEcCCEEEEEEEeCCCC-CeeEecCCCCCCCCCCCCCCc----ccccCCcCCCCeE
Confidence 5799999862 5899999999999999999764 34566666432211 258864 2233358999999
Q ss_pred EEEEEecCCCCCcceEEEeccCCCCCCCCCCcceEEEEEEecCCCCCCCCCCCCCCCC----CCCCCCchhhhhhhhhhh
Q 040938 186 NVLLKAKHKSPNASFLIAARPYATGPASFDNTTTAGVLEYEQPNNANKNKKLPLLKPA----LPKFNDTNFAMQFSKKIR 261 (487)
Q Consensus 186 dv~v~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~~~~~~p~----~p~~~~~~~~~~~~~~~~ 261 (487)
...+++.+.. |.||-.++.... .. ...+-|...+...... +....+.. +.+|.... ... .+.
T Consensus 89 ~Y~f~~~~~~--GT~WYHsH~~~~----~~--Gl~G~lIV~~~~~~~~--~~~~~d~e~~l~l~Dw~~~~-~~~---~~~ 154 (539)
T TIGR03389 89 VYNFTITGQR--GTLWWHAHISWL----RA--TVYGAIVILPKPGVPY--PFPKPDREVPIILGEWWNAD-VEA---VIN 154 (539)
T ss_pred EEEEEecCCC--eeEEEecCchhh----hc--cceEEEEEcCCCCCCC--CCCCCCceEEEEecccccCC-HHH---HHH
Confidence 9999986344 999999885211 11 2333343333211000 00000000 00000000 000 000
Q ss_pred ccccCCCCCCCCCCcccEEEEEecccccCCCCCCcccCCCCCceeeeecceeccCCChhhhhhhhcCcccCcccCCCCCC
Q 040938 262 SLATAKFPAKVPRKVDRLFFFTVGLGLSPCPQNQTCQGPNNTMLAASINNVSFAQPNIALLQAHFFNKSKGVYTTDFPAN 341 (487)
Q Consensus 262 ~~~~~~~p~~~p~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iN~~~~~~p~~~~l~~~~~~~~~~~~~~~~~~~ 341 (487)
... ..+. . +. ..-...+||+.+... . +.
T Consensus 155 ~~~------------------~~~~--~----------~~-~~d~~liNG~~~~~~--------------~--~~----- 182 (539)
T TIGR03389 155 QAN------------------QTGG--A----------PN-VSDAYTINGHPGPLY--------------N--CS----- 182 (539)
T ss_pred HHH------------------hcCC--C----------CC-ccceEEECCCcCCCC--------------C--CC-----
Confidence 000 0000 0 00 000245676532100 0 00
Q ss_pred CCccccCCCCCCCCcccCCCceEEEecCCCEEEEEEeeCCCCCCCCCCeeecCCceEEEEecCCCCCCCCCCCCCCCCCC
Q 040938 342 PPFKFNYTGTPPSNIMVSSGTRAVALPFNASVEVVMQDTSIIGAESHPLHLHGFNFFVVGQGFGNFDPSKDPAKFNLVDP 421 (487)
Q Consensus 342 ~p~~~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~~l~n~~~~~~~~HP~HlHg~~f~Vl~~g~g~~~~~~~~~~~n~~~p 421 (487)
.....++.++.|++++|.|+|.+. ...+.|||+||.|.||+.. |. +..|
T Consensus 183 -----------------~~~~~~i~v~~G~~~RlRlINa~~--~~~~~~~idgH~~~VIa~D-G~-----------~~~P 231 (539)
T TIGR03389 183 -----------------SKDTFKLTVEPGKTYLLRIINAAL--NDELFFAIANHTLTVVEVD-AT-----------YTKP 231 (539)
T ss_pred -----------------CCCceEEEECCCCEEEEEEEeccC--CceEEEEECCCeEEEEEeC-Cc-----------ccCc
Confidence 011346889999999999999863 4568899999999999985 22 2356
Q ss_pred CccceEEecCCcEEEEEEEcCC-CeeEEEeecc
Q 040938 422 AERNTVGVPSGGWVAIRFLADN-PGAWFMHCHL 453 (487)
Q Consensus 422 ~~rDtv~v~~~~~~~irf~~dn-pG~w~~HCHi 453 (487)
...|++.|.+|+...|.++++. +|.|.++-+.
T Consensus 232 ~~~~~l~i~~GqRydVlv~a~~~~g~y~i~~~~ 264 (539)
T TIGR03389 232 FKTKTIVIGPGQTTNVLLTADQSPGRYFMAARP 264 (539)
T ss_pred eEeCeEEecCCCEEEEEEECCCCCceEEEEEec
Confidence 7889999999999999999975 7988877553
No 26
>TIGR03388 ascorbase L-ascorbate oxidase, plant type. Members of this protein family are the copper-containing enzyme L-ascorbate oxidase (EC 1.10.3.3), also called ascorbase. This family is found in flowering plants, and shows greater sequence similarity to a family of laccases (EC 1.10.3.2) from plants than to other known ascorbate oxidases.
Probab=98.60 E-value=1.8e-07 Score=99.85 Aligned_cols=92 Identities=22% Similarity=0.363 Sum_probs=70.6
Q ss_pred eEEEecCCCEEEEEEeeCCCCCCCCCCeeecCCceEEEEecCCCCCCCCCCCCCCCCCCCccceEEecCCcEEEEEEEcC
Q 040938 363 RAVALPFNASVEVVMQDTSIIGAESHPLHLHGFNFFVVGQGFGNFDPSKDPAKFNLVDPAERNTVGVPSGGWVAIRFLAD 442 (487)
Q Consensus 363 ~~~~v~~g~~v~~~l~n~~~~~~~~HP~HlHg~~f~Vl~~g~g~~~~~~~~~~~n~~~p~~rDtv~v~~~~~~~irf~~d 442 (487)
+.+.++.|+.|++.+.|.. ....+.||+||... .+. .|.. . ..--..-.|+||+..+.+|+++
T Consensus 32 P~i~~~~Gd~v~v~v~N~l--~~~~t~iHwHGl~~--~~~---~~~D---G-------~~~vtq~~I~PG~s~~y~f~~~ 94 (541)
T TIGR03388 32 PTIRAQAGDTIVVELTNKL--HTEGVVIHWHGIRQ--IGT---PWAD---G-------TAGVTQCAINPGETFIYNFVVD 94 (541)
T ss_pred CeEEEEcCCEEEEEEEECC--CCCCccEEecCcCC--cCC---cccC---C-------CCccccCCcCCCCEEEEEEEcC
Confidence 4678899999999999974 23679999999842 111 0000 0 0011234689999999999999
Q ss_pred CCeeEEEeecchhhhhccceEEEEEeCCC
Q 040938 443 NPGAWFMHCHLEVHTSWGLKMAWIVNDGK 471 (487)
Q Consensus 443 npG~w~~HCHi~~H~~~GM~~~~~V~~~~ 471 (487)
.+|.|.||||...|...||.+.+.|+++.
T Consensus 95 ~~Gt~wyH~H~~~q~~~Gl~G~liV~~~~ 123 (541)
T TIGR03388 95 RPGTYFYHGHYGMQRSAGLYGSLIVDVPD 123 (541)
T ss_pred CCEEEEEEecchHHhhccceEEEEEecCC
Confidence 99999999999999999999999998764
No 27
>PLN02835 oxidoreductase
Probab=98.51 E-value=6.9e-06 Score=87.39 Aligned_cols=73 Identities=11% Similarity=0.139 Sum_probs=59.3
Q ss_pred EEEecCCCEEEEEEeeCCCCCCCCCCeeecCCceEEEEecCCCCCCCCCCCCCCCCCCCccceEEecCCcEEEEEEEcCC
Q 040938 364 AVALPFNASVEVVMQDTSIIGAESHPLHLHGFNFFVVGQGFGNFDPSKDPAKFNLVDPAERNTVGVPSGGWVAIRFLADN 443 (487)
Q Consensus 364 ~~~v~~g~~v~~~l~n~~~~~~~~HP~HlHg~~f~Vl~~g~g~~~~~~~~~~~n~~~p~~rDtv~v~~~~~~~irf~~dn 443 (487)
.+.++.|++++|.|+|.+. ....-||+.||.|.||+.... +..|...|++.|.+|+...|-++++.
T Consensus 203 ~~~v~~G~~yRlRliNa~~--~~~~~f~i~gH~~~VI~~DG~------------~v~p~~~~~l~i~~GqRydvlv~~~~ 268 (539)
T PLN02835 203 TFSGDQGKTYMFRISNVGL--STSLNFRIQGHTMKLVEVEGS------------HTIQNIYDSLDVHVGQSVAVLVTLNQ 268 (539)
T ss_pred eEEECCCCEEEEEEEEcCC--CccEEEEECCCEEEEEEECCc------------cCCCceeeEEEECcCceEEEEEEcCC
Confidence 4678899999999999874 467999999999999998532 23355689999999999999999864
Q ss_pred -CeeEEEe
Q 040938 444 -PGAWFMH 450 (487)
Q Consensus 444 -pG~w~~H 450 (487)
+|.|-++
T Consensus 269 ~~g~y~i~ 276 (539)
T PLN02835 269 SPKDYYIV 276 (539)
T ss_pred CCCcEEEE
Confidence 6866555
No 28
>PLN02354 copper ion binding / oxidoreductase
Probab=98.46 E-value=8.1e-06 Score=87.02 Aligned_cols=77 Identities=12% Similarity=0.188 Sum_probs=62.9
Q ss_pred ceEEEecCCCEEEEEEeeCCCCCCCCCCeeecCCceEEEEecCCCCCCCCCCCCCCCCCCCccceEEecCCcEEEEEEEc
Q 040938 362 TRAVALPFNASVEVVMQDTSIIGAESHPLHLHGFNFFVVGQGFGNFDPSKDPAKFNLVDPAERNTVGVPSGGWVAIRFLA 441 (487)
Q Consensus 362 ~~~~~v~~g~~v~~~l~n~~~~~~~~HP~HlHg~~f~Vl~~g~g~~~~~~~~~~~n~~~p~~rDtv~v~~~~~~~irf~~ 441 (487)
...+.++.|++++|.|+|.+. ....-||+.||.|.||+.... +..|...|++.|.+|+...|.+++
T Consensus 206 ~~~~~v~~Gk~yRlRiINa~~--~~~~~f~IdgH~~tVIa~DG~------------~v~p~~~~~l~i~~GqRydVlv~a 271 (552)
T PLN02354 206 EPLFTMKPGKTYRYRICNVGL--KSSLNFRIQGHKMKLVEMEGS------------HVLQNDYDSLDVHVGQCFSVLVTA 271 (552)
T ss_pred ceEEEECCCCEEEEEEEecCC--CceEEEEECCceEEEEEeCCc------------ccCCcceeEEEEccCceEEEEEEC
Confidence 346889999999999999874 567899999999999998532 234556799999999999999999
Q ss_pred CC-CeeEEEeec
Q 040938 442 DN-PGAWFMHCH 452 (487)
Q Consensus 442 dn-pG~w~~HCH 452 (487)
+. +|.|-+.-.
T Consensus 272 ~~~~g~Y~i~a~ 283 (552)
T PLN02354 272 NQAPKDYYMVAS 283 (552)
T ss_pred CCCCCcEEEEEe
Confidence 74 787766654
No 29
>PLN02168 copper ion binding / pectinesterase
Probab=98.39 E-value=1.9e-05 Score=83.94 Aligned_cols=83 Identities=14% Similarity=0.125 Sum_probs=62.4
Q ss_pred CeEEEcCcCCCCCCCCCCceeeEEEeCCCEEEEEEEecCCCceEEEEEcCceEEEE-EecCcccceeEeeEEEeCCCceE
Q 040938 107 DAFTINGLPGPLYNCSAKDTFKLKVKPGKTYLLRMINAALNDELFFSIANHTLTVV-ETDAVYVKPIKTKVVLITPGQTT 185 (487)
Q Consensus 107 d~~lvNG~~~~~~~~~~~~~~~~~v~~G~~~rlR~iN~~~~~~~~~~i~~h~~~vi-a~DG~~v~P~~~~~l~l~pG~R~ 185 (487)
..+++||+.. .|.|+++.|+++++++.|--.. ...+|.+|..+.-- ..||.+- ..-.|.||+++
T Consensus 46 ~~~~vNG~~P---------GP~I~~~~GD~v~V~v~N~L~~-~ttiHWHGl~~~~~~~~DGv~g-----tQcpI~PG~sf 110 (545)
T PLN02168 46 QVIVINDMFP---------GPLLNATANDVINVNIFNNLTE-PFLMTWNGLQLRKNSWQDGVRG-----TNCPILPGTNW 110 (545)
T ss_pred EEEEECCcCC---------CCcEEEECCCEEEEEEEeCCCC-CccEeeCCccCCCCCCcCCCCC-----CcCCCCCCCcE
Confidence 5789999852 5899999999999999999863 45667766443222 2499653 12369999999
Q ss_pred EEEEEecCCCCCcceEEEecc
Q 040938 186 NVLLKAKHKSPNASFLIAARP 206 (487)
Q Consensus 186 dv~v~~~~~~~~g~~~i~~~~ 206 (487)
...+++.... |+||..++.
T Consensus 111 tY~F~~~~q~--GT~WYHsH~ 129 (545)
T PLN02168 111 TYRFQVKDQI--GSYFYFPSL 129 (545)
T ss_pred EEEEEeCCCC--ceEEEecCh
Confidence 9999986334 999999884
No 30
>PLN02792 oxidoreductase
Probab=98.37 E-value=3.4e-05 Score=81.91 Aligned_cols=74 Identities=7% Similarity=0.108 Sum_probs=60.0
Q ss_pred eEEEecCCCEEEEEEeeCCCCCCCCCCeeecCCceEEEEecCCCCCCCCCCCCCCCCCCCccceEEecCCcEEEEEEEcC
Q 040938 363 RAVALPFNASVEVVMQDTSIIGAESHPLHLHGFNFFVVGQGFGNFDPSKDPAKFNLVDPAERNTVGVPSGGWVAIRFLAD 442 (487)
Q Consensus 363 ~~~~v~~g~~v~~~l~n~~~~~~~~HP~HlHg~~f~Vl~~g~g~~~~~~~~~~~n~~~p~~rDtv~v~~~~~~~irf~~d 442 (487)
..+.++.|++++|.|+|.+. ....-|++.||.|.||+.... +..|...|++.|.+|+...|.++++
T Consensus 193 ~~~~v~~Gk~yRlRliNa~~--~~~~~f~i~gH~~tVI~~DG~------------~v~p~~~~~l~i~~GqRydVlV~a~ 258 (536)
T PLN02792 193 YSITVDKGKTYRFRISNVGL--QTSLNFEILGHQLKLIEVEGT------------HTVQSMYTSLDIHVGQTYSVLVTMD 258 (536)
T ss_pred ceEEECCCCEEEEEEEEcCC--CceEEEEECCcEEEEEEeCCc------------cCCCcceeEEEEccCceEEEEEEcC
Confidence 35788999999999999864 567899999999999998532 2345567999999999999999997
Q ss_pred C-CeeEEEe
Q 040938 443 N-PGAWFMH 450 (487)
Q Consensus 443 n-pG~w~~H 450 (487)
. +|.|-+.
T Consensus 259 ~~~g~Y~i~ 267 (536)
T PLN02792 259 QPPQNYSIV 267 (536)
T ss_pred CCCceEEEE
Confidence 5 5765554
No 31
>PF07731 Cu-oxidase_2: Multicopper oxidase; InterPro: IPR011706 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 2 domains.; GO: 0005507 copper ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GDC_C 3ZX1_A 2YAH_A 2YAR_A 2YAQ_A 2YAO_A 2YAM_A 2YAF_A 2YAP_A 2XU9_A ....
Probab=98.36 E-value=3.9e-06 Score=73.05 Aligned_cols=78 Identities=19% Similarity=0.236 Sum_probs=70.8
Q ss_pred eeeEEEeCCCEEEEEEEecCCCceEEEEEcCceEEEEEecCccc-----------ceeEeeEEEeCCCceEEEEEEecCC
Q 040938 126 TFKLKVKPGKTYLLRMINAALNDELFFSIANHTLTVVETDAVYV-----------KPIKTKVVLITPGQTTNVLLKAKHK 194 (487)
Q Consensus 126 ~~~~~v~~G~~~rlR~iN~~~~~~~~~~i~~h~~~via~DG~~v-----------~P~~~~~l~l~pG~R~dv~v~~~~~ 194 (487)
...+.++.|++++|+|+|.+.. ...|+|+|+.|+|++.++... .|...|++.|.+|+++.|.++++.+
T Consensus 33 ~~~~~~~~g~~v~~~l~N~~~~-~Hp~HlHG~~F~vl~~~~~~~~~~~~~~~~~~~~~~~DTv~v~~~~~~~i~~~~~~~ 111 (138)
T PF07731_consen 33 TPVIEVKNGDVVEIVLQNNGSM-PHPFHLHGHSFQVLGRGGGPWNPDDTQSYNPENPGWRDTVLVPPGGWVVIRFRADNP 111 (138)
T ss_dssp TSEEEEETTSEEEEEEEECTTS-SEEEEETTSEEEEEEETTEESTTHCGGCCCSSSSSEESEEEEETTEEEEEEEEETST
T ss_pred cceEEEeCCCEEEEEEECCCCC-ccceEEEeeEEEeeecCCcccccccccccccccCcccccccccceeEEEEEEEeecc
Confidence 4789999999999999998764 789999999999999999884 5788999999999999999999866
Q ss_pred CCCcceEEEeccC
Q 040938 195 SPNASFLIAARPY 207 (487)
Q Consensus 195 ~~~g~~~i~~~~~ 207 (487)
|.|.+.++..
T Consensus 112 ---G~w~~HCHi~ 121 (138)
T PF07731_consen 112 ---GPWLFHCHIL 121 (138)
T ss_dssp ---EEEEEEESSH
T ss_pred ---eEEEEEEchH
Confidence 9999999863
No 32
>TIGR03390 ascorbOXfungal L-ascorbate oxidase, fungal type. This model describes a family of fungal ascorbate oxidases, within a larger family of multicopper oxidases that also includes plant ascorbate oxidases (TIGR03388), plant laccases and laccase-like proteins (TIGR03389), and related proteins. The member from Acremonium sp. HI-25 is characterized.
Probab=98.34 E-value=7.5e-05 Score=79.79 Aligned_cols=232 Identities=13% Similarity=0.109 Sum_probs=133.2
Q ss_pred CeEEEcCcCCCCCCCCCCceeeEEEeCCCEEEEEEEecCCCceEEEEEcCceEEE-EEecCcccceeEeeEEEeCCCceE
Q 040938 107 DAFTINGLPGPLYNCSAKDTFKLKVKPGKTYLLRMINAALNDELFFSIANHTLTV-VETDAVYVKPIKTKVVLITPGQTT 185 (487)
Q Consensus 107 d~~lvNG~~~~~~~~~~~~~~~~~v~~G~~~rlR~iN~~~~~~~~~~i~~h~~~v-ia~DG~~v~P~~~~~l~l~pG~R~ 185 (487)
..++|||+.. .|+|++++|+++++++.|.-......+|.+|..+.- -..||.+.. ..-.|.||+.+
T Consensus 28 ~~~~~NG~~P---------GP~I~~~~GD~v~V~v~N~L~~~~ttiHwHGi~~~~~~~~DGvp~v----TQcpI~PG~sf 94 (538)
T TIGR03390 28 YSVVVNGTSP---------GPEIRLQEGQTTWIRVYNDIPDNNVTMHWHGLTQRTAPFSDGTPLA----SQWPIPPGHFF 94 (538)
T ss_pred EEEEECCcCC---------CCeEEEeCCCEEEEEEEECCCCCCceEECCCCCCCCCCCCCCCccc----ccCCCCCCCcE
Confidence 5799999852 599999999999999999864445567777765422 337888642 11247899988
Q ss_pred EEEEEecC-CCCCcceEEEeccCCCCCCCCCCcceEEEEEEecCCCCCCCCCCCCCCCC----CCCCCCchhhhhhhhhh
Q 040938 186 NVLLKAKH-KSPNASFLIAARPYATGPASFDNTTTAGVLEYEQPNNANKNKKLPLLKPA----LPKFNDTNFAMQFSKKI 260 (487)
Q Consensus 186 dv~v~~~~-~~~~g~~~i~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~~~~~~p~----~p~~~~~~~~~~~~~~~ 260 (487)
.-.+++.. .. |.||..++... + .. ...+.|..++... . ....+.. +.+|.-.. ..+. .
T Consensus 95 ~Y~f~~~~~q~--GT~WYHsH~~~--Q--~~--~l~G~lIV~~~~~--~---~~~~d~e~~l~l~Dw~~~~-~~~~---~ 157 (538)
T TIGR03390 95 DYEIKPEPGDA--GSYFYHSHVGF--Q--AV--TAFGPLIVEDCEP--P---PYKYDDERILLVSDFFSAT-DEEI---E 157 (538)
T ss_pred EEEEEecCCCC--eeeEEecCCch--h--hh--cceeEEEEccCCc--c---CCCccCcEEEEEeCCCCCC-HHHH---H
Confidence 88888742 34 99999988521 1 11 2334444433210 0 0000000 00000000 0000 0
Q ss_pred hccccCCCCCCCCCCcccEEEEEecccccCCCCCCcccCCCCCceeeeecceeccCCChhhhhhhhcCcccCcccCCCCC
Q 040938 261 RSLATAKFPAKVPRKVDRLFFFTVGLGLSPCPQNQTCQGPNNTMLAASINNVSFAQPNIALLQAHFFNKSKGVYTTDFPA 340 (487)
Q Consensus 261 ~~~~~~~~p~~~p~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iN~~~~~~p~~~~l~~~~~~~~~~~~~~~~~~ 340 (487)
..+. ...... .+..-...+||+..... +..
T Consensus 158 ~~~~------------------~~~~~~------------~~~~d~~liNG~~~~~~-----------------~~~--- 187 (538)
T TIGR03390 158 QGLL------------------STPFTW------------SGETEAVLLNGKSGNKS-----------------FYA--- 187 (538)
T ss_pred hhhh------------------ccCCcc------------CCCCceEEECCcccccc-----------------ccc---
Confidence 0000 000000 00001245676532100 000
Q ss_pred CCCccccCCCCCCCCcccCCCceEEEecCCCEEEEEEeeCCCCCCCCCCeeecCCc-eEEEEecCCCCCCCCCCCCCCCC
Q 040938 341 NPPFKFNYTGTPPSNIMVSSGTRAVALPFNASVEVVMQDTSIIGAESHPLHLHGFN-FFVVGQGFGNFDPSKDPAKFNLV 419 (487)
Q Consensus 341 ~~p~~~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~~l~n~~~~~~~~HP~HlHg~~-f~Vl~~g~g~~~~~~~~~~~n~~ 419 (487)
..+ + ...| ....+.++.|++++|.|+|.+. ....-|+|.||. |+||+.... +.
T Consensus 188 ----~~~--~-----~~~~-~~~~~~v~~G~~yRlRlINa~~--~~~~~~~idgH~~~~VIa~DG~------------~~ 241 (538)
T TIGR03390 188 ----QIN--P-----SGSC-MLPVIDVEPGKTYRLRFIGATA--LSLISLGIEDHENLTIIEADGS------------YT 241 (538)
T ss_pred ----ccc--C-----CCCC-cceEEEECCCCEEEEEEEccCC--ceEEEEEECCCCeEEEEEeCCC------------CC
Confidence 000 0 0001 1346889999999999999863 456889999999 999998522 34
Q ss_pred CCCccceEEecCCcEEEEEEEcCCC
Q 040938 420 DPAERNTVGVPSGGWVAIRFLADNP 444 (487)
Q Consensus 420 ~p~~rDtv~v~~~~~~~irf~~dnp 444 (487)
.|...|++.|.+|+...|.++++.+
T Consensus 242 ~P~~v~~l~l~~GqRydVlv~~~~~ 266 (538)
T TIGR03390 242 KPAKIDHLQLGGGQRYSVLFKAKTE 266 (538)
T ss_pred CceEeCeEEEccCCEEEEEEECCCc
Confidence 6778899999999999999999763
No 33
>PLN02991 oxidoreductase
Probab=98.34 E-value=2.1e-05 Score=83.41 Aligned_cols=83 Identities=19% Similarity=0.191 Sum_probs=63.6
Q ss_pred CeEEEcCcCCCCCCCCCCceeeEEEeCCCEEEEEEEecCCCceEEEEEcCceEE-EEEecCcccceeEeeEEEeCCCceE
Q 040938 107 DAFTINGLPGPLYNCSAKDTFKLKVKPGKTYLLRMINAALNDELFFSIANHTLT-VVETDAVYVKPIKTKVVLITPGQTT 185 (487)
Q Consensus 107 d~~lvNG~~~~~~~~~~~~~~~~~v~~G~~~rlR~iN~~~~~~~~~~i~~h~~~-via~DG~~v~P~~~~~l~l~pG~R~ 185 (487)
..++|||+.. .|.|+++.|+++++++.|.-. ....+|-+|..+. --..||.+. + .-.|.||+.+
T Consensus 48 ~~~~vNG~~P---------GP~I~~~~GD~v~V~V~N~L~-~~ttiHWHGi~q~~~~~~DGv~~----t-QcpI~PG~sf 112 (543)
T PLN02991 48 QGILINGKFP---------GPDIISVTNDNLIINVFNHLD-EPFLISWSGIRNWRNSYQDGVYG----T-TCPIPPGKNY 112 (543)
T ss_pred EEEEEcCCCC---------CCcEEEECCCEEEEEecCCCC-CCccEEECCcccCCCccccCCCC----C-CCccCCCCcE
Confidence 5789999852 589999999999999999975 4456777665532 234799643 1 3469999999
Q ss_pred EEEEEecCCCCCcceEEEecc
Q 040938 186 NVLLKAKHKSPNASFLIAARP 206 (487)
Q Consensus 186 dv~v~~~~~~~~g~~~i~~~~ 206 (487)
.-.+++.... |+||..++.
T Consensus 113 tY~F~~~~q~--GT~WYHsH~ 131 (543)
T PLN02991 113 TYALQVKDQI--GSFYYFPSL 131 (543)
T ss_pred EEEEEeCCCC--cceEEecCc
Confidence 9999986334 999999885
No 34
>PLN02191 L-ascorbate oxidase
Probab=98.26 E-value=4.9e-06 Score=89.28 Aligned_cols=85 Identities=21% Similarity=0.334 Sum_probs=70.0
Q ss_pred eEEEecCCCEEEEEEeeCCCCCCCCCCeeecCCceEEEEecCCCCCCCCCCCCCCCCCCCccce------EEecCCcEEE
Q 040938 363 RAVALPFNASVEVVMQDTSIIGAESHPLHLHGFNFFVVGQGFGNFDPSKDPAKFNLVDPAERNT------VGVPSGGWVA 436 (487)
Q Consensus 363 ~~~~v~~g~~v~~~l~n~~~~~~~~HP~HlHg~~f~Vl~~g~g~~~~~~~~~~~n~~~p~~rDt------v~v~~~~~~~ 436 (487)
+++.++.|+.|++.+.|.. ....+.+|.||.... +. .|.|- -.|+||+..+
T Consensus 54 P~i~~~~Gd~v~v~v~N~l--~~~~tsiHwHGl~~~--~~-------------------~~~DGv~gvtq~pI~PG~s~~ 110 (574)
T PLN02191 54 PTIDAVAGDTIVVHLTNKL--TTEGLVIHWHGIRQK--GS-------------------PWADGAAGVTQCAINPGETFT 110 (574)
T ss_pred CeEEEEcCCEEEEEEEECC--CCCCccEECCCCCCC--CC-------------------ccccCCCccccCCcCCCCeEE
Confidence 4688999999999999973 235799999998621 10 12332 4689999999
Q ss_pred EEEEcCCCeeEEEeecchhhhhccceEEEEEeCC
Q 040938 437 IRFLADNPGAWFMHCHLEVHTSWGLKMAWIVNDG 470 (487)
Q Consensus 437 irf~~dnpG~w~~HCHi~~H~~~GM~~~~~V~~~ 470 (487)
.+|+++.+|.|.||||...+...||.+.+.|++.
T Consensus 111 Y~f~~~~~GT~wYHsH~~~q~~~Gl~G~liV~~~ 144 (574)
T PLN02191 111 YKFTVEKPGTHFYHGHYGMQRSAGLYGSLIVDVA 144 (574)
T ss_pred EEEECCCCeEEEEeeCcHHHHhCCCEEEEEEccC
Confidence 9999999999999999999999999999999754
No 35
>PRK10883 FtsI repressor; Provisional
Probab=98.26 E-value=0.00019 Score=75.44 Aligned_cols=74 Identities=18% Similarity=0.169 Sum_probs=58.5
Q ss_pred EEEecCCCEEEEEEeeCCCCCCCCCCeee-cCCceEEEEecCCCCCCCCCCCCCCCCCCCccceEEecCCcEEEEEEEcC
Q 040938 364 AVALPFNASVEVVMQDTSIIGAESHPLHL-HGFNFFVVGQGFGNFDPSKDPAKFNLVDPAERNTVGVPSGGWVAIRFLAD 442 (487)
Q Consensus 364 ~~~v~~g~~v~~~l~n~~~~~~~~HP~Hl-Hg~~f~Vl~~g~g~~~~~~~~~~~n~~~p~~rDtv~v~~~~~~~irf~~d 442 (487)
.+.++.+ +++|.|+|.+. ....-++| +||.|+||+...|. +..|...|.+.+.||+.+.|-+.++
T Consensus 221 ~~~v~~~-~~RlRliNas~--~~~~~l~l~d~~~~~vIa~DGg~-----------~~~P~~~~~l~l~pGeR~dvlVd~~ 286 (471)
T PRK10883 221 YVEVSRG-WVRLRLLNASN--ARRYQLQMSDGRPLHVIAGDQGF-----------LPAPVSVKQLSLAPGERREILVDMS 286 (471)
T ss_pred eEEecCC-EEEEEEEEccC--CceEEEEEcCCCeEEEEEeCCCc-----------ccCCcEeCeEEECCCCeEEEEEECC
Confidence 4566654 78999999863 45677787 89999999986553 2346667899999999999999998
Q ss_pred CCeeEEEee
Q 040938 443 NPGAWFMHC 451 (487)
Q Consensus 443 npG~w~~HC 451 (487)
..+.+.+++
T Consensus 287 ~~~~~~l~~ 295 (471)
T PRK10883 287 NGDEVSITA 295 (471)
T ss_pred CCceEEEEC
Confidence 877888877
No 36
>TIGR03095 rusti_cyanin rusticyanin. Rusticyanin is a blue copper protein, described in an obligate acidophilic chemolithoautroph, Acidithiobacillus ferrooxidans, as an electron transfer protein. It can constitute up to 5 percent of protein in cells grown on Fe(II) and is thought to be part of an electron chain for Fe(II) oxidation, with two c-type cytochromes, an aa3-type cytochrome oxidase, and 02 as terminal electron acceptor. It is rather closely related to sulfocyanin (TIGR03094).
Probab=98.24 E-value=6.8e-06 Score=72.16 Aligned_cols=90 Identities=16% Similarity=0.232 Sum_probs=58.9
Q ss_pred eEEEecCCCEEEEEEeeCCCCCCCCCCeeecCCce--EEEEecCCCCCCCCCCCCCCCCCCCccceEEecC---C--cEE
Q 040938 363 RAVALPFNASVEVVMQDTSIIGAESHPLHLHGFNF--FVVGQGFGNFDPSKDPAKFNLVDPAERNTVGVPS---G--GWV 435 (487)
Q Consensus 363 ~~~~v~~g~~v~~~l~n~~~~~~~~HP~HlHg~~f--~Vl~~g~g~~~~~~~~~~~n~~~p~~rDtv~v~~---~--~~~ 435 (487)
+.+.++.|+.|++++.|... ...|.|-||.+.- .......|. +.....-.+++ | ++.
T Consensus 52 P~I~v~~Gd~V~v~v~N~~~--~~~H~~~I~~~g~~~~~~p~mdG~--------------~~~~~~~i~p~~~~g~~~~~ 115 (148)
T TIGR03095 52 PTIVIPEGVTVHFTVINTDT--DSGHNFDISKRGPPYPYMPGMDGL--------------GFVAGTGFLPPPKSGKFGYT 115 (148)
T ss_pred CEEEEcCCCEEEEEEEeCCC--CccccEEeecCCCccccccccCCC--------------CccccCcccCCCCCCcccee
Confidence 46889999999999999752 3567666653221 110000000 11111112222 2 246
Q ss_pred EEEEEcCCCeeEEEeecchhhhhccceEEEEEe
Q 040938 436 AIRFLADNPGAWFMHCHLEVHTSWGLKMAWIVN 468 (487)
Q Consensus 436 ~irf~~dnpG~w~~HCHi~~H~~~GM~~~~~V~ 468 (487)
.+.|+++.+|.+.||||+..|...||.+.+.|+
T Consensus 116 ~~tf~f~~aGtywyhC~~pgH~~~GM~G~iiV~ 148 (148)
T TIGR03095 116 DFTYHFSTAGTYWYLCTYPGHAENGMYGKIVVK 148 (148)
T ss_pred EEEEECCCCeEEEEEcCChhHHHCCCEEEEEEC
Confidence 788998999999999999999999999999884
No 37
>PF00394 Cu-oxidase: Multicopper oxidase; InterPro: IPR001117 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 1 (blue) domains. These domains are also present in proteins that have lost the ability to bind copper.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1RZP_A 2AVF_D 1NIA_A 1KCB_A 2NRD_A 1NIB_A 2BW4_A 1RZQ_C 2BWD_A 2BWI_A ....
Probab=98.22 E-value=6.1e-06 Score=73.81 Aligned_cols=94 Identities=15% Similarity=0.226 Sum_probs=77.6
Q ss_pred ceEEEecCCCEEEEEEeeCCCCCCCCCCeeecCCceEEEEecCCCCCCCCCCCCCCCCCCCccceEEecCCcEEEEEEEc
Q 040938 362 TRAVALPFNASVEVVMQDTSIIGAESHPLHLHGFNFFVVGQGFGNFDPSKDPAKFNLVDPAERNTVGVPSGGWVAIRFLA 441 (487)
Q Consensus 362 ~~~~~v~~g~~v~~~l~n~~~~~~~~HP~HlHg~~f~Vl~~g~g~~~~~~~~~~~n~~~p~~rDtv~v~~~~~~~irf~~ 441 (487)
..++.++.|++++|.|+|.+. ...+.|++.||.|+||+.... ...|...|++.|.+|+.+.|.+++
T Consensus 59 ~~~~~v~~g~~~rlRliNa~~--~~~~~~~i~gh~~~Via~DG~------------~v~p~~~~~l~l~~G~R~dvlv~~ 124 (159)
T PF00394_consen 59 PPVIKVKPGERYRLRLINAGA--STSFNFSIDGHPMTVIAADGV------------PVEPYKVDTLVLAPGQRYDVLVTA 124 (159)
T ss_dssp SGEEEEETTTEEEEEEEEESS--S-BEEEEETTBCEEEEEETTE------------EEEEEEESBEEE-TTEEEEEEEEE
T ss_pred cceEEEcCCcEEEEEEEeccC--CeeEEEEeeccceeEeeeccc------------cccccccceEEeeCCeEEEEEEEe
Confidence 468899999999999999863 467999999999999998422 233778999999999999999999
Q ss_pred CC-CeeEEEee----cchhhhhccceEEEEEeC
Q 040938 442 DN-PGAWFMHC----HLEVHTSWGLKMAWIVND 469 (487)
Q Consensus 442 dn-pG~w~~HC----Hi~~H~~~GM~~~~~V~~ 469 (487)
+. +|.|.+++ +...+...|+...+++.+
T Consensus 125 ~~~~g~y~i~~~~~~~~~~~~~~~~~~aiL~Y~ 157 (159)
T PF00394_consen 125 DQPPGNYWIRASYQHDSINDPQNGNALAILRYD 157 (159)
T ss_dssp CSCSSEEEEEEEESSSSSHSHGGGTTEEEEEET
T ss_pred CCCCCeEEEEEecccCCCccCCCcEEEEEEEEC
Confidence 87 99999999 667778888887777654
No 38
>TIGR01480 copper_res_A copper-resistance protein, CopA family. This model represents the CopA copper resistance protein family. CopA is related to laccase (benzenediol:oxygen oxidoreductase) and L-ascorbate oxidase, both copper-containing enzymes. Most members have a typical TAT (twin-arginine translocation) signal sequence with an Arg-Arg pair. Twin-arginine translocation is observed for a large number of periplasmic proteins that cross the inner membrane with metal-containing cofactors already bound. The combination of copper-binding sites and TAT translocation motif suggests a mechansism of resistance by packaging and export.
Probab=98.22 E-value=4.1e-06 Score=89.63 Aligned_cols=85 Identities=9% Similarity=0.125 Sum_probs=71.5
Q ss_pred EEEcCcCCCCCCCCCCceeeEEEeCCCEEEEEEEecCCCceEEEEEcCceEEEEEecCcccceeEeeEEEeCCCceEEEE
Q 040938 109 FTINGLPGPLYNCSAKDTFKLKVKPGKTYLLRMINAALNDELFFSIANHTLTVVETDAVYVKPIKTKVVLITPGQTTNVL 188 (487)
Q Consensus 109 ~lvNG~~~~~~~~~~~~~~~~~v~~G~~~rlR~iN~~~~~~~~~~i~~h~~~via~DG~~v~P~~~~~l~l~pG~R~dv~ 188 (487)
++|||+.++ ..+.|.++.|+++||||+|.+. ....+|++||.|.++..||.+. | ..+++.|.|||++++.
T Consensus 488 wtiNG~~~~-------~~~pl~v~~Gervri~l~N~t~-~~HpmHlHG~~f~v~~~~G~~~-~-~~dTv~V~Pg~t~~~~ 557 (587)
T TIGR01480 488 WSFDGEAFG-------LKTPLRFNYGERLRVVLVNDTM-MAHPIHLHGMWSELEDGQGEFQ-V-RKHTVDVPPGGKRSFR 557 (587)
T ss_pred EEECCccCC-------CCCceEecCCCEEEEEEECCCC-CCcceeEcCceeeeecCCCccc-c-cCCceeeCCCCEEEEE
Confidence 689998642 1246889999999999999875 5689999999999998888632 2 2377999999999999
Q ss_pred EEecCCCCCcceEEEecc
Q 040938 189 LKAKHKSPNASFLIAARP 206 (487)
Q Consensus 189 v~~~~~~~~g~~~i~~~~ 206 (487)
++++++ |.|++.++.
T Consensus 558 f~ad~p---G~w~~HCH~ 572 (587)
T TIGR01480 558 VTADAL---GRWAYHCHM 572 (587)
T ss_pred EECCCC---eEEEEcCCC
Confidence 999987 999999985
No 39
>PRK10965 multicopper oxidase; Provisional
Probab=98.20 E-value=6.1e-06 Score=87.48 Aligned_cols=93 Identities=13% Similarity=0.074 Sum_probs=75.1
Q ss_pred EEEcCcCCCCCCCCCCceeeEEEeCCCEEEEEEEecCCCceEEEEEcCceEEEEEecCcccce---eEeeEEEeCCCceE
Q 040938 109 FTINGLPGPLYNCSAKDTFKLKVKPGKTYLLRMINAALNDELFFSIANHTLTVVETDAVYVKP---IKTKVVLITPGQTT 185 (487)
Q Consensus 109 ~lvNG~~~~~~~~~~~~~~~~~v~~G~~~rlR~iN~~~~~~~~~~i~~h~~~via~DG~~v~P---~~~~~l~l~pG~R~ 185 (487)
.+|||+.+. . ..+.++++.|++.+|+|+|.+....+.|||+|+.|+|++.||.+..+ ...|+|.|.+ +++
T Consensus 414 ~~ING~~~~---~---~~~~~~~~~G~~e~w~i~N~~~~~~Hp~HlHg~~F~Vl~~~g~~~~~~~~~wkDTv~v~~-~~~ 486 (523)
T PRK10965 414 NKINGKAFD---M---NKPMFAAKKGQYERWVISGVGDMMLHPFHIHGTQFRILSENGKPPAAHRAGWKDTVRVEG-GRS 486 (523)
T ss_pred ccCCCeECC---C---CCcceecCCCCEEEEEEEeCCCCCccCeEEeCcEEEEEEecCCCCCccccccccEEEECC-cEE
Confidence 389999742 1 24668899999999999999975678999999999999999998753 4579999976 889
Q ss_pred EEEEEecCCC-CCcceEEEeccCC
Q 040938 186 NVLLKAKHKS-PNASFLIAARPYA 208 (487)
Q Consensus 186 dv~v~~~~~~-~~g~~~i~~~~~~ 208 (487)
.|+|+++... ..|.|.+.|+.+.
T Consensus 487 ~i~~~f~~~~~~~g~~~~HCHiL~ 510 (523)
T PRK10965 487 EVLVKFDHDAPKEHAYMAHCHLLE 510 (523)
T ss_pred EEEEEecCCCCCCCCEEEEeCchh
Confidence 9999998532 1278999998643
No 40
>TIGR02656 cyanin_plasto plastocyanin. Members of this family are plastocyanin, a blue copper protein related to pseudoazurin, halocyanin, amicyanin, etc. This protein, located in the thylakoid luman, performs electron transport to photosystem I in Cyanobacteria and chloroplasts.
Probab=97.78 E-value=0.00012 Score=59.90 Aligned_cols=82 Identities=16% Similarity=0.239 Sum_probs=58.3
Q ss_pred EEEecCCCEEEEEEeeCCCCCCCCCCeeecCCceEEEEecCCCCCCCCCCCCCCCCCCCccceEEecCCcEEEEEEEcCC
Q 040938 364 AVALPFNASVEVVMQDTSIIGAESHPLHLHGFNFFVVGQGFGNFDPSKDPAKFNLVDPAERNTVGVPSGGWVAIRFLADN 443 (487)
Q Consensus 364 ~~~v~~g~~v~~~l~n~~~~~~~~HP~HlHg~~f~Vl~~g~g~~~~~~~~~~~n~~~p~~rDtv~v~~~~~~~irf~~dn 443 (487)
.+.++.|++|+|+ |.+ ...|.+.++...+..-.. . .......+++.+.||+...+.|..
T Consensus 18 ~i~v~~G~~V~~~--N~~---~~~H~~~~~~~~~~~~~~-----~---------~~~~~~~~~~~~~pG~t~~~tF~~-- 76 (99)
T TIGR02656 18 KISIAAGDTVEWV--NNK---GGPHNVVFDEDAVPAGVK-----E---------LAKSLSHKDLLNSPGESYEVTFST-- 76 (99)
T ss_pred EEEECCCCEEEEE--ECC---CCCceEEECCCCCccchh-----h---------hcccccccccccCCCCEEEEEeCC--
Confidence 5789999999987 533 367888876543211100 0 001123467888999998887765
Q ss_pred CeeEEEeecchhhhhccceEEEEEe
Q 040938 444 PGAWFMHCHLEVHTSWGLKMAWIVN 468 (487)
Q Consensus 444 pG~w~~HCHi~~H~~~GM~~~~~V~ 468 (487)
+|.|.|||- -|...||.+.+.|+
T Consensus 77 ~G~y~y~C~--~H~~aGM~G~I~V~ 99 (99)
T TIGR02656 77 PGTYTFYCE--PHRGAGMVGKITVE 99 (99)
T ss_pred CEEEEEEcC--CccccCCEEEEEEC
Confidence 999999998 89999999999884
No 41
>COG2132 SufI Putative multicopper oxidases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.74 E-value=0.00038 Score=73.07 Aligned_cols=183 Identities=17% Similarity=0.129 Sum_probs=112.8
Q ss_pred CCCCC----CcccccCCCCCeEEEEEEeCCCccceeeccccccccccceeeEEEeCCCCCCCC-------CCCCC---cc
Q 040938 11 ADGPA----YITQCPIQTGQSYVYNFTVTGQRGTLFWHAHISWLRATLYGPIVILPKRHASYP-------FPQPF---KE 76 (487)
Q Consensus 11 ~DGv~----~vtq~~I~PG~~~~Y~f~~~~~~Gt~wYH~H~~~~~~Gl~G~liV~~~~~~~~~-------~~~~d---~e 76 (487)
.||.+ .+.+-.+.||+.|....+. ..-|++=+.|......+-+.+..-.........+ .+.++ ..
T Consensus 236 ~DG~~v~~~~~d~~~l~p~er~~v~v~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 314 (451)
T COG2132 236 VDGGPLPPVSVDELYLAPGERYEVLVDM-NDGGAVTLTALGEDMPDTLKGFRAPNPILTPSYPVLNGRVGAPTGDMADHA 314 (451)
T ss_pred eCCcCcCceeeeeEEecCcceEEEEEEc-CCCCeEEEEeccccCCceeeeeeccccccccccccccccccCCCcchhhcc
Confidence 46655 5677889999999999987 4578888888872211222222222211100000 00111 11
Q ss_pred eeEEeeeccccChHHHHHHHhhcCCCCCCCCeEEEcCcCCCCCCCCCCceeeEEEeCCCEEEEEEEecCCCceEEEEEcC
Q 040938 77 VPMIFGEWWKADTEKIINQALQTGAAPNISDAFTINGLPGPLYNCSAKDTFKLKVKPGKTYLLRMINAALNDELFFSIAN 156 (487)
Q Consensus 77 ~~l~l~d~~~~~~~~~~~~~~~~g~~~~~~d~~lvNG~~~~~~~~~~~~~~~~~v~~G~~~rlR~iN~~~~~~~~~~i~~ 156 (487)
....+.....+............ .......+.+||+..+. ....+.++.|+++||+|.|-+. -.+.|+|+|
T Consensus 315 ~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~~~~~n~~~~~~------~~~~~~~~~G~~~~~~i~n~~~-~~HP~HlHg 385 (451)
T COG2132 315 PVGLLVTILVEPGPNRDTDFHLI--GGIGGYVWAINGKAFDD------NRVTLIAKAGTRERWVLTNDTP-MPHPFHLHG 385 (451)
T ss_pred ccccchhhcCCCcccccccchhh--cccccccccccCccCCC------CcCceeecCCCEEEEEEECCCC-CccCeEEcC
Confidence 11111111111110000000000 00122457788876421 2467899999999999999997 778999999
Q ss_pred ceEEEEEecCccc---ceeEeeEEEeCCCceEEEEEEecCCCCCcceEEEeccC
Q 040938 157 HTLTVVETDAVYV---KPIKTKVVLITPGQTTNVLLKAKHKSPNASFLIAARPY 207 (487)
Q Consensus 157 h~~~via~DG~~v---~P~~~~~l~l~pG~R~dv~v~~~~~~~~g~~~i~~~~~ 207 (487)
+.|.|++.| ... .+...|++.+.+|+|+.|.++++.+ |.|.+.|+..
T Consensus 386 ~~F~v~~~~-~~~~~~~~~~kDTv~v~~~~~~~v~~~a~~~---g~~~~HCH~l 435 (451)
T COG2132 386 HFFQVLSGD-APAPGAAPGWKDTVLVAPGERLLVRFDADYP---GPWMFHCHIL 435 (451)
T ss_pred ceEEEEecC-CCcccccCccceEEEeCCCeEEEEEEeCCCC---CceEEeccch
Confidence 999999999 332 3577899999999999999999988 7999999864
No 42
>PLN00044 multi-copper oxidase-related protein; Provisional
Probab=97.68 E-value=0.00016 Score=77.56 Aligned_cols=90 Identities=20% Similarity=0.200 Sum_probs=70.8
Q ss_pred eEEEecCCCEEEEEEeeCCCCCCCCCCeeecCCceEEEEecCCCCCCCCCCCCCCCCCCCccceEEecCCcEEEEEEEc-
Q 040938 363 RAVALPFNASVEVVMQDTSIIGAESHPLHLHGFNFFVVGQGFGNFDPSKDPAKFNLVDPAERNTVGVPSGGWVAIRFLA- 441 (487)
Q Consensus 363 ~~~~v~~g~~v~~~l~n~~~~~~~~HP~HlHg~~f~Vl~~g~g~~~~~~~~~~~n~~~p~~rDtv~v~~~~~~~irf~~- 441 (487)
+.+.+..|++|++.+.|.. .....+|.||-+..--...+|. + . ....|+||+..+.+|++
T Consensus 60 PtI~~~~GD~v~V~V~N~L---~~~ttIHWHGl~q~~t~w~DGv--------------~-~-TQcPI~PG~sftY~F~~~ 120 (596)
T PLN00044 60 PALNVTTNWNLVVNVRNAL---DEPLLLTWHGVQQRKSAWQDGV--------------G-G-TNCAIPAGWNWTYQFQVK 120 (596)
T ss_pred CcEEEECCCEEEEEEEeCC---CCCccEEECCccCCCCccccCC--------------C-C-CcCCcCCCCcEEEEEEeC
Confidence 3578889999999999974 3678999999753211111111 1 1 24578999999999999
Q ss_pred CCCeeEEEeecchhhhhccceEEEEEeCCC
Q 040938 442 DNPGAWFMHCHLEVHTSWGLKMAWIVNDGK 471 (487)
Q Consensus 442 dnpG~w~~HCHi~~H~~~GM~~~~~V~~~~ 471 (487)
|.+|.+.||+|..++...||.+.+.|++++
T Consensus 121 dq~GT~WYHsH~~~Q~~~Gl~GalII~~~~ 150 (596)
T PLN00044 121 DQVGSFFYAPSTALHRAAGGYGAITINNRD 150 (596)
T ss_pred CCCceeEeeccchhhhhCcCeeEEEEcCcc
Confidence 689999999999999999999999998764
No 43
>KOG1263 consensus Multicopper oxidases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.67 E-value=0.0074 Score=64.25 Aligned_cols=229 Identities=18% Similarity=0.230 Sum_probs=136.6
Q ss_pred CeEEEcCcCCCCCCCCCCceeeEEEeCCCEEEEEEEecCCCceEEEEEcCce-EEEEEecCcccceeEeeEEEeCCCceE
Q 040938 107 DAFTINGLPGPLYNCSAKDTFKLKVKPGKTYLLRMINAALNDELFFSIANHT-LTVVETDAVYVKPIKTKVVLITPGQTT 185 (487)
Q Consensus 107 d~~lvNG~~~~~~~~~~~~~~~~~v~~G~~~rlR~iN~~~~~~~~~~i~~h~-~~via~DG~~v~P~~~~~l~l~pG~R~ 185 (487)
..++|||+-. .|.|.++.|+++.++++|-.. ..+.++-+|.. ..--..||.++. .=.|.|||.+
T Consensus 48 ~vi~iNG~fP---------GP~I~~~~gD~ivV~v~N~~~-~~~sihWhGv~q~kn~w~DG~~~T-----qCPI~Pg~~~ 112 (563)
T KOG1263|consen 48 QVITINGQFP---------GPTINAEEGDTIVVNVVNRLD-EPFSIHWHGVRQRKNPWQDGVYIT-----QCPIQPGENF 112 (563)
T ss_pred eeEeecCCCC---------CCeEEEEeCCEEEEEEEeCCC-CceEEEeccccccCCccccCCccc-----cCCcCCCCeE
Confidence 5789999852 599999999999999999954 66777777754 334445995552 2237999999
Q ss_pred EEEEEecCCCCCcceEEEeccCCCCCCCCCCcceEEEEEEecCCCCCCCCCCCCCCCCCCCCCCchhhhhhhhhhhcccc
Q 040938 186 NVLLKAKHKSPNASFLIAARPYATGPASFDNTTTAGVLEYEQPNNANKNKKLPLLKPALPKFNDTNFAMQFSKKIRSLAT 265 (487)
Q Consensus 186 dv~v~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~~~~ 265 (487)
--.++.+... |+||-.++..... .....+-|.....+. .+ . | .+
T Consensus 113 tY~F~v~~q~--GT~~yh~h~~~~R-----a~G~~G~liI~~~~~------~p-~-p-f~-------------------- 156 (563)
T KOG1263|consen 113 TYRFTVKDQI--GTLWYHSHVSWQR-----ATGVFGALIINPRPG------LP-V-P-FP-------------------- 156 (563)
T ss_pred EEEEEeCCcc--eeEEEeecccccc-----ccCceeEEEEcCCcc------CC-C-C-CC--------------------
Confidence 9999999665 9988887752211 111344444432210 01 0 1 00
Q ss_pred CCCCCCCCCCcccEEEEEecccccC-C------CCCCcccCCCCCceeeeecceeccCCChhhhhhhhcCcccCcccCCC
Q 040938 266 AKFPAKVPRKVDRLFFFTVGLGLSP-C------PQNQTCQGPNNTMLAASINNVSFAQPNIALLQAHFFNKSKGVYTTDF 338 (487)
Q Consensus 266 ~~~p~~~p~~~d~~~~~~~~~~~~~-~------~~~~~~~~~~~~~~~~~iN~~~~~~p~~~~l~~~~~~~~~~~~~~~~ 338 (487)
..++.+.+.++--... . ..+.....+.. .-...+||.+.
T Consensus 157 ---------~pd~E~~ill~dW~~~~~~~~l~~~~~~~~~~p~~-~D~~~iNg~~g------------------------ 202 (563)
T KOG1263|consen 157 ---------KPDKEFTILLGDWYKNLNHKNLKNFLDRTGALPNP-SDGVLINGRSG------------------------ 202 (563)
T ss_pred ---------CCCceeEEEeEeeccccCHHHHHHhhccCCCCCCC-CCceEECCCCC------------------------
Confidence 0122222211100000 0 00000000000 00012333220
Q ss_pred CCCCCccccCCCCCCCCcccCCCceEEEecCCCEEEEEEeeCCCCCCCCCCeeecCCceEEEEecCCCCCCCCCCCCCCC
Q 040938 339 PANPPFKFNYTGTPPSNIMVSSGTRAVALPFNASVEVVMQDTSIIGAESHPLHLHGFNFFVVGQGFGNFDPSKDPAKFNL 418 (487)
Q Consensus 339 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~~l~n~~~~~~~~HP~HlHg~~f~Vl~~g~g~~~~~~~~~~~n~ 418 (487)
..-.|...+++..|+++.|.|+|.+. ....+ |.+-||.+.||+.. | ..
T Consensus 203 ------------------~~~~~~~~l~v~pGktY~lRiiN~g~-~~~l~-F~I~~H~ltvVe~D-g-----------~y 250 (563)
T KOG1263|consen 203 ------------------FLYNCTPTLTVEPGKTYRLRIINAGL-NTSLN-FSIANHQLTVVEVD-G-----------AY 250 (563)
T ss_pred ------------------cccCceeEEEEcCCCEEEEEEEcccc-ccceE-EEECCeEEEEEEec-c-----------eE
Confidence 01234678899999999999999875 23334 99999999999985 2 23
Q ss_pred CCCCccceEEecCCcEEEEEEEcCC-Ce-eEEEeec
Q 040938 419 VDPAERNTVGVPSGGWVAIRFLADN-PG-AWFMHCH 452 (487)
Q Consensus 419 ~~p~~rDtv~v~~~~~~~irf~~dn-pG-~w~~HCH 452 (487)
..|.--|++.|.+|+...+-.++|. ++ .|+-=|=
T Consensus 251 ~~p~~~~~l~i~~GQ~~~vLvtadq~~~~Y~i~~~~ 286 (563)
T KOG1263|consen 251 TKPFTTDSLDIHPGQTYSVLLTADQSPGDYYIAASP 286 (563)
T ss_pred EeeeeeceEEEcCCcEEEEEEeCCCCCCcEEEEEEe
Confidence 4566789999999999999999975 44 4665553
No 44
>TIGR03096 nitroso_cyanin nitrosocyanin. Nitrosocyanin, as described from the obligate chemolithoautotroph Nitrosomonas europaea, is a red copper protein of unknown function with sequence similarity to a number of blue copper redox proteins.
Probab=97.43 E-value=0.0007 Score=57.78 Aligned_cols=59 Identities=24% Similarity=0.435 Sum_probs=48.0
Q ss_pred EEEecCCCEEEEEEeeCCCCCCCCCCeeecCCceEEEEecCCCCCCCCCCCCCCCCCCCccceEEecCCcEEEEEEEcCC
Q 040938 364 AVALPFNASVEVVMQDTSIIGAESHPLHLHGFNFFVVGQGFGNFDPSKDPAKFNLVDPAERNTVGVPSGGWVAIRFLADN 443 (487)
Q Consensus 364 ~~~v~~g~~v~~~l~n~~~~~~~~HP~HlHg~~f~Vl~~g~g~~~~~~~~~~~n~~~p~~rDtv~v~~~~~~~irf~~dn 443 (487)
.+.++.|+.|+|++.|.+ ..+|.+-++++.+ ...++||+..+++|.++.
T Consensus 62 ~I~VkaGD~Vtl~vtN~d---~~~H~f~i~~~gi----------------------------s~~I~pGet~TitF~adK 110 (135)
T TIGR03096 62 ALVVKKGTPVKVTVENKS---PISEGFSIDAYGI----------------------------SEVIKAGETKTISFKADK 110 (135)
T ss_pred EEEECCCCEEEEEEEeCC---CCccceEECCCCc----------------------------ceEECCCCeEEEEEECCC
Confidence 578999999999999965 3567766665411 456788999999999999
Q ss_pred CeeEEEeecc
Q 040938 444 PGAWFMHCHL 453 (487)
Q Consensus 444 pG~w~~HCHi 453 (487)
||.|.|||-.
T Consensus 111 pG~Y~y~C~~ 120 (135)
T TIGR03096 111 AGAFTIWCQL 120 (135)
T ss_pred CEEEEEeCCC
Confidence 9999999964
No 45
>PF00127 Copper-bind: Copper binding proteins, plastocyanin/azurin family; InterPro: IPR000923 Blue (type 1) copper proteins are small proteins which bind a single copper atom and which are characterised by an intense electronic absorption band near 600 nm [, ]. The most well known members of this class of proteins are the plant chloroplastic plastocyanins, which exchange electrons with cytochrome c6, and the distantly related bacterial azurins, which exchange electrons with cytochrome c551. This family of proteins also includes amicyanin from bacteria such as Methylobacterium extorquens or Paracoccus versutus (Thiobacillus versutus) that can grow on methylamine; auracyanins A and B from Chloroflexus aurantiacus []; blue copper protein from Alcaligenes faecalis; cupredoxin (CPC) from Cucumis sativus (Cucumber) peelings []; cusacyanin (basic blue protein; plantacyanin, CBP) from cucumber; halocyanin from Natronomonas pharaonis (Natronobacterium pharaonis) [], a membrane associated copper-binding protein; pseudoazurin from Pseudomonas; rusticyanin from Thiobacillus ferrooxidans []; stellacyanin from Rhus vernicifera (Japanese lacquer tree); umecyanin from the roots of Armoracia rusticana (Horseradish); and allergen Ra3 from ragweed. This pollen protein is evolutionary related to the above proteins, but seems to have lost the ability to bind copper. Although there is an appreciable amount of divergence in the sequences of all these proteins, the copper ligand sites are conserved.; GO: 0005507 copper ion binding, 0009055 electron carrier activity; PDB: 1UAT_A 1CUO_A 1PLC_A 4PCY_A 3PCY_A 1PND_A 1PNC_A 1JXG_A 6PCY_A 1TKW_A ....
Probab=97.20 E-value=0.0018 Score=52.82 Aligned_cols=83 Identities=19% Similarity=0.334 Sum_probs=55.4
Q ss_pred eEEEecCCCEEEEEEeeCCCCCCCCCCeeecCCceEEEEecCCCCCCCCCCCCCCCCCCCccceEEecCCcEEEEEEEcC
Q 040938 363 RAVALPFNASVEVVMQDTSIIGAESHPLHLHGFNFFVVGQGFGNFDPSKDPAKFNLVDPAERNTVGVPSGGWVAIRFLAD 442 (487)
Q Consensus 363 ~~~~v~~g~~v~~~l~n~~~~~~~~HP~HlHg~~f~Vl~~g~g~~~~~~~~~~~n~~~p~~rDtv~v~~~~~~~irf~~d 442 (487)
..+.++.|++|.|+..+ ...|.+.+=- .+ .......... +..-.+..+.+|....+.|.
T Consensus 17 ~~i~V~~G~tV~~~n~~-----~~~Hnv~~~~-------~~---~~~~~~~~~~----~~~~~~~~~~~G~~~~~tF~-- 75 (99)
T PF00127_consen 17 SEITVKAGDTVTFVNND-----SMPHNVVFVA-------DG---MPAGADSDYV----PPGDSSPLLAPGETYSVTFT-- 75 (99)
T ss_dssp SEEEEETTEEEEEEEES-----SSSBEEEEET-------TS---SHTTGGHCHH----STTCEEEEBSTTEEEEEEEE--
T ss_pred CEEEECCCCEEEEEECC-----CCCceEEEec-------cc---cccccccccc----CccccceecCCCCEEEEEeC--
Confidence 35789999999998763 3567665532 11 0000000000 01115667888998888877
Q ss_pred CCeeEEEeecchhhhhccceEEEEEe
Q 040938 443 NPGAWFMHCHLEVHTSWGLKMAWIVN 468 (487)
Q Consensus 443 npG~w~~HCHi~~H~~~GM~~~~~V~ 468 (487)
.+|.|.|+|- - |...||.+.+.|+
T Consensus 76 ~~G~y~y~C~-P-H~~~GM~G~i~V~ 99 (99)
T PF00127_consen 76 KPGTYEYYCT-P-HYEAGMVGTIIVE 99 (99)
T ss_dssp SSEEEEEEET-T-TGGTTSEEEEEEE
T ss_pred CCeEEEEEcC-C-CcccCCEEEEEEC
Confidence 9999999999 5 9999999999984
No 46
>PRK02888 nitrous-oxide reductase; Validated
Probab=96.98 E-value=0.0034 Score=66.72 Aligned_cols=78 Identities=15% Similarity=0.348 Sum_probs=58.9
Q ss_pred EEEecCCCEEEEEEeeCCCCCCCCCCeeecCCceEEEEecCCCCCCCCCCCCCCCCCCCccceEEecCCcEEEEEEEcCC
Q 040938 364 AVALPFNASVEVVMQDTSIIGAESHPLHLHGFNFFVVGQGFGNFDPSKDPAKFNLVDPAERNTVGVPSGGWVAIRFLADN 443 (487)
Q Consensus 364 ~~~v~~g~~v~~~l~n~~~~~~~~HP~HlHg~~f~Vl~~g~g~~~~~~~~~~~n~~~p~~rDtv~v~~~~~~~irf~~dn 443 (487)
-+.++.|+.|.|+|.|.....+..|-|-+-++.. -+.+.||....+.|+++.
T Consensus 556 ~i~Vk~GDeVt~~lTN~d~~~DViHGF~Ip~~nI----------------------------~~dv~PG~t~svtF~adk 607 (635)
T PRK02888 556 EFTVKQGDEVTVIVTNLDKVEDLTHGFAIPNYGV----------------------------NMEVAPQATASVTFTADK 607 (635)
T ss_pred eEEecCCCEEEEEEEeCCcccccccceeecccCc----------------------------cEEEcCCceEEEEEEcCC
Confidence 4678999999999999543235677777744421 245668999999999999
Q ss_pred CeeEEEeecchhhh-hccceEEEEEeC
Q 040938 444 PGAWFMHCHLEVHT-SWGLKMAWIVND 469 (487)
Q Consensus 444 pG~w~~HCHi~~H~-~~GM~~~~~V~~ 469 (487)
||.|.+||...-|. ..+|.+.+.|++
T Consensus 608 PGvy~~~CtefCGa~H~~M~G~~iVep 634 (635)
T PRK02888 608 PGVYWYYCTWFCHALHMEMRGRMLVEP 634 (635)
T ss_pred CEEEEEECCcccccCcccceEEEEEEe
Confidence 99999999874332 249999999864
No 47
>PF00127 Copper-bind: Copper binding proteins, plastocyanin/azurin family; InterPro: IPR000923 Blue (type 1) copper proteins are small proteins which bind a single copper atom and which are characterised by an intense electronic absorption band near 600 nm [, ]. The most well known members of this class of proteins are the plant chloroplastic plastocyanins, which exchange electrons with cytochrome c6, and the distantly related bacterial azurins, which exchange electrons with cytochrome c551. This family of proteins also includes amicyanin from bacteria such as Methylobacterium extorquens or Paracoccus versutus (Thiobacillus versutus) that can grow on methylamine; auracyanins A and B from Chloroflexus aurantiacus []; blue copper protein from Alcaligenes faecalis; cupredoxin (CPC) from Cucumis sativus (Cucumber) peelings []; cusacyanin (basic blue protein; plantacyanin, CBP) from cucumber; halocyanin from Natronomonas pharaonis (Natronobacterium pharaonis) [], a membrane associated copper-binding protein; pseudoazurin from Pseudomonas; rusticyanin from Thiobacillus ferrooxidans []; stellacyanin from Rhus vernicifera (Japanese lacquer tree); umecyanin from the roots of Armoracia rusticana (Horseradish); and allergen Ra3 from ragweed. This pollen protein is evolutionary related to the above proteins, but seems to have lost the ability to bind copper. Although there is an appreciable amount of divergence in the sequences of all these proteins, the copper ligand sites are conserved.; GO: 0005507 copper ion binding, 0009055 electron carrier activity; PDB: 1UAT_A 1CUO_A 1PLC_A 4PCY_A 3PCY_A 1PND_A 1PNC_A 1JXG_A 6PCY_A 1TKW_A ....
Probab=96.90 E-value=0.0012 Score=53.91 Aligned_cols=37 Identities=24% Similarity=0.433 Sum_probs=31.3
Q ss_pred cCCCCCeEEEEEEeCCCccceeeccccccccccceeeEEEe
Q 040938 21 PIQTGQSYVYNFTVTGQRGTLFWHAHISWLRATLYGPIVIL 61 (487)
Q Consensus 21 ~I~PG~~~~Y~f~~~~~~Gt~wYH~H~~~~~~Gl~G~liV~ 61 (487)
.+.||+++++.|+ .+|+|.|+|-. ...+||.|.|+|+
T Consensus 63 ~~~~G~~~~~tF~---~~G~y~y~C~P-H~~~GM~G~i~V~ 99 (99)
T PF00127_consen 63 LLAPGETYSVTFT---KPGTYEYYCTP-HYEAGMVGTIIVE 99 (99)
T ss_dssp EBSTTEEEEEEEE---SSEEEEEEETT-TGGTTSEEEEEEE
T ss_pred ecCCCCEEEEEeC---CCeEEEEEcCC-CcccCCEEEEEEC
Confidence 3689999999997 69999999983 3347999999995
No 48
>TIGR02656 cyanin_plasto plastocyanin. Members of this family are plastocyanin, a blue copper protein related to pseudoazurin, halocyanin, amicyanin, etc. This protein, located in the thylakoid luman, performs electron transport to photosystem I in Cyanobacteria and chloroplasts.
Probab=96.88 E-value=0.00099 Score=54.41 Aligned_cols=37 Identities=24% Similarity=0.339 Sum_probs=30.7
Q ss_pred cCCCCCeEEEEEEeCCCccceeeccccccccccceeeEEEe
Q 040938 21 PIQTGQSYVYNFTVTGQRGTLFWHAHISWLRATLYGPIVIL 61 (487)
Q Consensus 21 ~I~PG~~~~Y~f~~~~~~Gt~wYH~H~~~~~~Gl~G~liV~ 61 (487)
-+.||+++++.|.. +|+|+|||- ....+||.|.|+|+
T Consensus 63 ~~~pG~t~~~tF~~---~G~y~y~C~-~H~~aGM~G~I~V~ 99 (99)
T TIGR02656 63 LNSPGESYEVTFST---PGTYTFYCE-PHRGAGMVGKITVE 99 (99)
T ss_pred ccCCCCEEEEEeCC---CEEEEEEcC-CccccCCEEEEEEC
Confidence 46899999999963 999999998 33347999999985
No 49
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=96.86 E-value=0.0047 Score=50.87 Aligned_cols=68 Identities=15% Similarity=0.332 Sum_probs=42.8
Q ss_pred EEEecCCCEEEEEEeeCCCCCCCCCCeeecCCceEEEEecCCCCCCCCCCCCCCCCCCCccceEEecCCcEEEEEEEcCC
Q 040938 364 AVALPFNASVEVVMQDTSIIGAESHPLHLHGFNFFVVGQGFGNFDPSKDPAKFNLVDPAERNTVGVPSGGWVAIRFLADN 443 (487)
Q Consensus 364 ~~~v~~g~~v~~~l~n~~~~~~~~HP~HlHg~~f~Vl~~g~g~~~~~~~~~~~n~~~p~~rDtv~v~~~~~~~irf~~dn 443 (487)
.+.++.|+.|.+++.|.+. ..|-|.+.+. +. ...+.+|+..++.|.++.
T Consensus 36 ~i~v~~G~~v~l~~~N~~~---~~h~~~i~~~---------------------------~~-~~~l~~g~~~~~~f~~~~ 84 (104)
T PF13473_consen 36 TITVKAGQPVTLTFTNNDS---RPHEFVIPDL---------------------------GI-SKVLPPGETATVTFTPLK 84 (104)
T ss_dssp EEEEETTCEEEEEEEE-SS---S-EEEEEGGG---------------------------TE-EEEE-TT-EEEEEEEE-S
T ss_pred EEEEcCCCeEEEEEEECCC---CcEEEEECCC---------------------------ce-EEEECCCCEEEEEEcCCC
Confidence 6789999999999999753 4455544441 12 378889999999999999
Q ss_pred CeeEEEeecchhhhhccceEEEE
Q 040938 444 PGAWFMHCHLEVHTSWGLKMAWI 466 (487)
Q Consensus 444 pG~w~~HCHi~~H~~~GM~~~~~ 466 (487)
||.|-|+|-+.. . |-+.+.
T Consensus 85 ~G~y~~~C~~~~--~--m~G~li 103 (104)
T PF13473_consen 85 PGEYEFYCTMHP--N--MKGTLI 103 (104)
T ss_dssp -EEEEEB-SSS---T--TB----
T ss_pred CEEEEEEcCCCC--c--ceeccc
Confidence 999999999544 3 555544
No 50
>PRK02710 plastocyanin; Provisional
Probab=96.51 E-value=0.012 Score=49.71 Aligned_cols=72 Identities=15% Similarity=0.252 Sum_probs=51.2
Q ss_pred EEEecCCCEEEEEEeeCCCCCCCCCCeeecCCceEEEEecCCCCCCCCCCCCCCCCCCCccceEEecCCcEEEEEEEcCC
Q 040938 364 AVALPFNASVEVVMQDTSIIGAESHPLHLHGFNFFVVGQGFGNFDPSKDPAKFNLVDPAERNTVGVPSGGWVAIRFLADN 443 (487)
Q Consensus 364 ~~~v~~g~~v~~~l~n~~~~~~~~HP~HlHg~~f~Vl~~g~g~~~~~~~~~~~n~~~p~~rDtv~v~~~~~~~irf~~dn 443 (487)
.+.++.|++|+|+ |.+ ...|.+.+.+... + ..+ ...+.+|+...+.|..
T Consensus 48 ~i~v~~Gd~V~~~--N~~---~~~H~v~~~~~~~---------~--------------~~~-~~~~~pg~t~~~tF~~-- 96 (119)
T PRK02710 48 TLTIKAGDTVKWV--NNK---LAPHNAVFDGAKE---------L--------------SHK-DLAFAPGESWEETFSE-- 96 (119)
T ss_pred EEEEcCCCEEEEE--ECC---CCCceEEecCCcc---------c--------------ccc-ccccCCCCEEEEEecC--
Confidence 4788999999986 432 3678876543210 0 011 2346788887777765
Q ss_pred CeeEEEeecchhhhhccceEEEEEe
Q 040938 444 PGAWFMHCHLEVHTSWGLKMAWIVN 468 (487)
Q Consensus 444 pG~w~~HCHi~~H~~~GM~~~~~V~ 468 (487)
||.|.|+|= -|...||-+.+.|+
T Consensus 97 ~G~y~y~C~--~H~~~gM~G~I~V~ 119 (119)
T PRK02710 97 AGTYTYYCE--PHRGAGMVGKITVE 119 (119)
T ss_pred CEEEEEEcC--CCccCCcEEEEEEC
Confidence 999999997 89999999999884
No 51
>TIGR02375 pseudoazurin pseudoazurin. Pseudoazurin, also called cupredoxin, is a small, blue periplasmic protein with a single bound copper atom. Pseudoazurin is related plastocyanins. Several examples of pseudoazurin are encoded by a neighboring gene for, or have been shown to transfer electrons to, copper-containing nitrite reductases (TIGR02376) of the same species.
Probab=95.81 E-value=0.045 Score=45.90 Aligned_cols=38 Identities=16% Similarity=0.191 Sum_probs=30.7
Q ss_pred CCcEEEEEEEcCCCeeEEEeecchhhhhccceEEEEEeCCCC
Q 040938 431 SGGWVAIRFLADNPGAWFMHCHLEVHTSWGLKMAWIVNDGKG 472 (487)
Q Consensus 431 ~~~~~~irf~~dnpG~w~~HCHi~~H~~~GM~~~~~V~~~~~ 472 (487)
++.. +.++++.+|.+-|+|- -|...||.+.+.|.++..
T Consensus 54 ~g~~--~~~tF~~~G~Y~Y~C~--pH~~~GM~G~V~Vg~~~~ 91 (116)
T TIGR02375 54 INEE--YTVTVTEEGVYGVKCT--PHYGMGMVALIQVGDPPA 91 (116)
T ss_pred CCCE--EEEEeCCCEEEEEEcC--CCccCCCEEEEEECCCCc
Confidence 3554 4455578999999998 999999999999987643
No 52
>TIGR03096 nitroso_cyanin nitrosocyanin. Nitrosocyanin, as described from the obligate chemolithoautotroph Nitrosomonas europaea, is a red copper protein of unknown function with sequence similarity to a number of blue copper redox proteins.
Probab=95.77 E-value=0.045 Score=46.83 Aligned_cols=62 Identities=24% Similarity=0.191 Sum_probs=51.1
Q ss_pred eeeEEEeCCCEEEEEEEecCCCceEEEEEcCceEEEEEecCcccceeEeeEEEeCCCceEEEEEEecCCCCCcceEEEec
Q 040938 126 TFKLKVKPGKTYLLRMINAALNDELFFSIANHTLTVVETDAVYVKPIKTKVVLITPGQTTNVLLKAKHKSPNASFLIAAR 205 (487)
Q Consensus 126 ~~~~~v~~G~~~rlR~iN~~~~~~~~~~i~~h~~~via~DG~~v~P~~~~~l~l~pG~R~dv~v~~~~~~~~g~~~i~~~ 205 (487)
...|+|++|++++|++.|.+. ....+.++++. -...|.||++..+.++++++ |.|+..+.
T Consensus 60 P~~I~VkaGD~Vtl~vtN~d~-~~H~f~i~~~g----------------is~~I~pGet~TitF~adKp---G~Y~y~C~ 119 (135)
T TIGR03096 60 PEALVVKKGTPVKVTVENKSP-ISEGFSIDAYG----------------ISEVIKAGETKTISFKADKA---GAFTIWCQ 119 (135)
T ss_pred CCEEEECCCCEEEEEEEeCCC-CccceEECCCC----------------cceEECCCCeEEEEEECCCC---EEEEEeCC
Confidence 478999999999999999986 45666666542 15668999999999999998 99999987
Q ss_pred cC
Q 040938 206 PY 207 (487)
Q Consensus 206 ~~ 207 (487)
..
T Consensus 120 ~H 121 (135)
T TIGR03096 120 LH 121 (135)
T ss_pred CC
Confidence 53
No 53
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=95.20 E-value=0.085 Score=43.32 Aligned_cols=61 Identities=18% Similarity=0.240 Sum_probs=42.8
Q ss_pred eeeEEEeCCCEEEEEEEecCCCceEEEEEcCceEEEEEecCcccceeEeeEEEeCCCceEEEEEEecCCCCCcceEEEec
Q 040938 126 TFKLKVKPGKTYLLRMINAALNDELFFSIANHTLTVVETDAVYVKPIKTKVVLITPGQTTNVLLKAKHKSPNASFLIAAR 205 (487)
Q Consensus 126 ~~~~~v~~G~~~rlR~iN~~~~~~~~~~i~~h~~~via~DG~~v~P~~~~~l~l~pG~R~dv~v~~~~~~~~g~~~i~~~ 205 (487)
...+++++|+.++|.+.|.+... ..|.+++. -....|.||+...+.+...++ |.|.+.+.
T Consensus 34 P~~i~v~~G~~v~l~~~N~~~~~-h~~~i~~~----------------~~~~~l~~g~~~~~~f~~~~~---G~y~~~C~ 93 (104)
T PF13473_consen 34 PSTITVKAGQPVTLTFTNNDSRP-HEFVIPDL----------------GISKVLPPGETATVTFTPLKP---GEYEFYCT 93 (104)
T ss_dssp S-EEEEETTCEEEEEEEE-SSS--EEEEEGGG----------------TEEEEE-TT-EEEEEEEE-S----EEEEEB-S
T ss_pred cCEEEEcCCCeEEEEEEECCCCc-EEEEECCC----------------ceEEEECCCCEEEEEEcCCCC---EEEEEEcC
Confidence 35899999999999999998754 66777661 112679999999999988887 99999887
Q ss_pred c
Q 040938 206 P 206 (487)
Q Consensus 206 ~ 206 (487)
.
T Consensus 94 ~ 94 (104)
T PF13473_consen 94 M 94 (104)
T ss_dssp S
T ss_pred C
Confidence 4
No 54
>COG4454 Uncharacterized copper-binding protein [Inorganic ion transport and metabolism]
Probab=94.87 E-value=0.05 Score=47.22 Aligned_cols=93 Identities=13% Similarity=0.143 Sum_probs=63.2
Q ss_pred EEecCCCEEEEEEeeCCCCCCCCCCeeecCCceEEEEecCCCCCCCCCCCCCCCCCCCccceEEecCCcEEEEEEEcCCC
Q 040938 365 VALPFNASVEVVMQDTSIIGAESHPLHLHGFNFFVVGQGFGNFDPSKDPAKFNLVDPAERNTVGVPSGGWVAIRFLADNP 444 (487)
Q Consensus 365 ~~v~~g~~v~~~l~n~~~~~~~~HP~HlHg~~f~Vl~~g~g~~~~~~~~~~~n~~~p~~rDtv~v~~~~~~~irf~~dnp 444 (487)
+.++.|++++.++.|.+. .-|=|-+- ++....+ .+.... ...-..-.-..++.+.||....+-+.+.++
T Consensus 65 ~~v~aG~tv~~v~~n~~e---l~hef~~~---~~~~~~~--~~~~~~---~~~Dme~d~~~~v~L~PG~s~elvv~ft~~ 133 (158)
T COG4454 65 FEVKAGETVRFVLKNEGE---LKHEFTMD---APDKNLE--HVTHMI---LADDMEHDDPNTVTLAPGKSGELVVVFTGA 133 (158)
T ss_pred ccccCCcEEeeeecCccc---ceEEEecc---Cccccch--hHHHhh---hCCccccCCcceeEeCCCCcEEEEEEecCC
Confidence 467789999999999653 34444333 1111111 000000 000011123568999999999999999999
Q ss_pred eeEEEeecchhhhhccceEEEEEe
Q 040938 445 GAWFMHCHLEVHTSWGLKMAWIVN 468 (487)
Q Consensus 445 G~w~~HCHi~~H~~~GM~~~~~V~ 468 (487)
|.+-|-|-|-+|-+.||-+.+.|.
T Consensus 134 g~ye~~C~iPGHy~AGM~g~itV~ 157 (158)
T COG4454 134 GKYEFACNIPGHYEAGMVGEITVS 157 (158)
T ss_pred ccEEEEecCCCcccCCcEEEEEeC
Confidence 999999999999999999999884
No 55
>PRK02710 plastocyanin; Provisional
Probab=94.70 E-value=0.034 Score=47.00 Aligned_cols=37 Identities=22% Similarity=0.314 Sum_probs=30.6
Q ss_pred cCCCCCeEEEEEEeCCCccceeeccccccccccceeeEEEe
Q 040938 21 PIQTGQSYVYNFTVTGQRGTLFWHAHISWLRATLYGPIVIL 61 (487)
Q Consensus 21 ~I~PG~~~~Y~f~~~~~~Gt~wYH~H~~~~~~Gl~G~liV~ 61 (487)
.+.||++++|.|+. +|+|-|+|=.| ..+||.|.|+|+
T Consensus 83 ~~~pg~t~~~tF~~---~G~y~y~C~~H-~~~gM~G~I~V~ 119 (119)
T PRK02710 83 AFAPGESWEETFSE---AGTYTYYCEPH-RGAGMVGKITVE 119 (119)
T ss_pred ccCCCCEEEEEecC---CEEEEEEcCCC-ccCCcEEEEEEC
Confidence 47899999999973 89999999732 237999999994
No 56
>TIGR03102 halo_cynanin halocyanin domain. Halocyanins are blue (type I) copper redox proteins found in halophilic archaea such as Natronobacterium pharaonis. This model represents a domain duplicated in some halocyanins, while appearing once in others. This domain includes the characteristic copper ligand residues. This family does not include plastocyanins, and does not include certain divergent paralogs of halocyanin.
Probab=94.23 E-value=0.41 Score=40.02 Aligned_cols=73 Identities=23% Similarity=0.338 Sum_probs=48.0
Q ss_pred EEEecCCCEEEEEEeeCCCCCCCCCCeeecCCceEEEEecCCCCCCCCCCCCCCCCCCCccceEEecCCcEEEEEEEcCC
Q 040938 364 AVALPFNASVEVVMQDTSIIGAESHPLHLHGFNFFVVGQGFGNFDPSKDPAKFNLVDPAERNTVGVPSGGWVAIRFLADN 443 (487)
Q Consensus 364 ~~~v~~g~~v~~~l~n~~~~~~~~HP~HlHg~~f~Vl~~g~g~~~~~~~~~~~n~~~p~~rDtv~v~~~~~~~irf~~dn 443 (487)
.++++.|++|.|+..+. ...|.... .+.+.|+.. .....+|+...+.| +.
T Consensus 43 ~ltV~~GdTVtw~~~~d----~~~HnV~s---------~~~~~f~s~---------------~~~~~~G~t~s~Tf--~~ 92 (115)
T TIGR03102 43 AIRVDPGTTVVWEWTGE----GGGHNVVS---------DGDGDLDES---------------ERVSEEGTTYEHTF--EE 92 (115)
T ss_pred EEEECCCCEEEEEECCC----CCCEEEEE---------CCCCCcccc---------------ccccCCCCEEEEEe--cC
Confidence 57899999999986542 24565532 222223210 11234555555554 78
Q ss_pred CeeEEEeecchhhhhccceEEEEEe
Q 040938 444 PGAWFMHCHLEVHTSWGLKMAWIVN 468 (487)
Q Consensus 444 pG~w~~HCHi~~H~~~GM~~~~~V~ 468 (487)
||.|.|+|- .|...||.+.+.|+
T Consensus 93 ~G~Y~Y~C~--pH~~~gM~G~I~V~ 115 (115)
T TIGR03102 93 PGIYLYVCV--PHEALGMKGAVVVE 115 (115)
T ss_pred CcEEEEEcc--CCCCCCCEEEEEEC
Confidence 999999998 89999999999884
No 57
>TIGR02657 amicyanin amicyanin. Members of this family are amicyanin, a type I blue copper protein that accepts electrons from the tryptophan tryptophylquinone (TTQ) cofactor of the methylamine dehydrogenase light chain and then transfers them to the heme group of cytochrome c-551i. Amicyanin, methylamine dehydrogenase, and cytochrome c-551i are periplasmic and form a complex. This system has been studied primarily in Paracoccus denitrificans and Methylobacterium extorquens. Related type I blue copper proteins include plastocyanin, pseudoazurin, halocyanin, etc.
Probab=94.21 E-value=0.42 Score=37.40 Aligned_cols=72 Identities=14% Similarity=0.188 Sum_probs=45.5
Q ss_pred EEEecCCCEEEEEEeeCCCCCCCCCCeeecCCceEEEEecCCCCCCCCCCCCCCCCCCCccceEEecCCcEEEEEEEcCC
Q 040938 364 AVALPFNASVEVVMQDTSIIGAESHPLHLHGFNFFVVGQGFGNFDPSKDPAKFNLVDPAERNTVGVPSGGWVAIRFLADN 443 (487)
Q Consensus 364 ~~~v~~g~~v~~~l~n~~~~~~~~HP~HlHg~~f~Vl~~g~g~~~~~~~~~~~n~~~p~~rDtv~v~~~~~~~irf~~dn 443 (487)
.+.+..|+.|.|+ |.. ...|.++++.-.+ +..+ +. ...+.+|.. ++++++.
T Consensus 12 ~i~v~~GdtVt~~--N~d---~~~Hnv~~~~g~~-------~~~~--------------~~-~~~~~~g~~--~~~tf~~ 62 (83)
T TIGR02657 12 ELHVKVGDTVTWI--NRE---AMPHNVHFVAGVL-------GEAA--------------LK-GPMMKKEQA--YSLTFTE 62 (83)
T ss_pred EEEECCCCEEEEE--ECC---CCCccEEecCCCC-------cccc--------------cc-ccccCCCCE--EEEECCC
Confidence 5788999999985 432 3679888753221 1000 11 112344544 4456789
Q ss_pred CeeEEEeecchhhhhccceEEEEEe
Q 040938 444 PGAWFMHCHLEVHTSWGLKMAWIVN 468 (487)
Q Consensus 444 pG~w~~HCHi~~H~~~GM~~~~~V~ 468 (487)
||.|.|||=+ |- .|-+.+.|+
T Consensus 63 ~G~y~y~C~~--Hp--~M~G~v~V~ 83 (83)
T TIGR02657 63 AGTYDYHCTP--HP--FMRGKVVVE 83 (83)
T ss_pred CEEEEEEcCC--CC--CCeEEEEEC
Confidence 9999999986 44 499998874
No 58
>TIGR03102 halo_cynanin halocyanin domain. Halocyanins are blue (type I) copper redox proteins found in halophilic archaea such as Natronobacterium pharaonis. This model represents a domain duplicated in some halocyanins, while appearing once in others. This domain includes the characteristic copper ligand residues. This family does not include plastocyanins, and does not include certain divergent paralogs of halocyanin.
Probab=93.52 E-value=0.1 Score=43.73 Aligned_cols=36 Identities=17% Similarity=0.319 Sum_probs=29.7
Q ss_pred CCCCCeEEEEEEeCCCccceeeccccccccccceeeEEEe
Q 040938 22 IQTGQSYVYNFTVTGQRGTLFWHAHISWLRATLYGPIVIL 61 (487)
Q Consensus 22 I~PG~~~~Y~f~~~~~~Gt~wYH~H~~~~~~Gl~G~liV~ 61 (487)
..||++|+|.|. ++|+|=|+|=.| ...||.|.|+|+
T Consensus 80 ~~~G~t~s~Tf~---~~G~Y~Y~C~pH-~~~gM~G~I~V~ 115 (115)
T TIGR03102 80 SEEGTTYEHTFE---EPGIYLYVCVPH-EALGMKGAVVVE 115 (115)
T ss_pred cCCCCEEEEEec---CCcEEEEEccCC-CCCCCEEEEEEC
Confidence 478999999994 599999999754 336999999984
No 59
>PRK02888 nitrous-oxide reductase; Validated
Probab=93.03 E-value=0.1 Score=55.73 Aligned_cols=43 Identities=14% Similarity=0.281 Sum_probs=35.8
Q ss_pred ccCCCCCeEEEEEEeCCCccceeeccccc-cc-cccceeeEEEeCC
Q 040938 20 CPIQTGQSYVYNFTVTGQRGTLFWHAHIS-WL-RATLYGPIVILPK 63 (487)
Q Consensus 20 ~~I~PG~~~~Y~f~~~~~~Gt~wYH~H~~-~~-~~Gl~G~liV~~~ 63 (487)
.-|.||++-+..|++ +++|+|||||..- +. -.+|.|.|+|+++
T Consensus 591 ~dv~PG~t~svtF~a-dkPGvy~~~CtefCGa~H~~M~G~~iVep~ 635 (635)
T PRK02888 591 MEVAPQATASVTFTA-DKPGVYWYYCTWFCHALHMEMRGRMLVEPK 635 (635)
T ss_pred EEEcCCceEEEEEEc-CCCEEEEEECCcccccCcccceEEEEEEeC
Confidence 346799999999996 8999999999862 22 2699999999874
No 60
>PF06525 SoxE: Sulfocyanin (SoxE); InterPro: IPR010532 Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterised as functionally different are the rusticyanins.
Probab=92.99 E-value=1.4 Score=40.10 Aligned_cols=101 Identities=17% Similarity=0.260 Sum_probs=61.8
Q ss_pred CceEEEecCCCEEEEEEeeCCCCCCCCCCeeecCCceEEEEecCCCCCCCC---CCCCCC--CCCCCccceEEecCCcEE
Q 040938 361 GTRAVALPFNASVEVVMQDTSIIGAESHPLHLHGFNFFVVGQGFGNFDPSK---DPAKFN--LVDPAERNTVGVPSGGWV 435 (487)
Q Consensus 361 ~~~~~~v~~g~~v~~~l~n~~~~~~~~HP~HlHg~~f~Vl~~g~g~~~~~~---~~~~~n--~~~p~~rDtv~v~~~~~~ 435 (487)
+.-.+.++.|-.|.+.+.|.+ .+.| .|-|+..+....+... +.+.+. ...+.--..=-+.+|...
T Consensus 84 G~m~i~VPAGw~V~i~f~N~~---~l~H-------nl~iv~~~~~~p~~~~i~~DgkIl~~~G~s~~~~~~~GI~~G~s~ 153 (196)
T PF06525_consen 84 GQMTIYVPAGWNVQITFTNQE---SLPH-------NLVIVQNDTPTPNNPPISSDGKILLYVGASPGNYTSNGISSGQSA 153 (196)
T ss_pred CcEEEEEcCCCEEEEEEEcCC---CCCe-------eEEEEeCCCCCCCccccCCCCceeeeccCCCCccccCCccCCcee
Confidence 345688999999999999964 3555 5666654422111100 000000 000000001123356666
Q ss_pred EEEEEcCCCeeEEEeecchhhhhccceEEEEEeCCC
Q 040938 436 AIRFLADNPGAWFMHCHLEVHTSWGLKMAWIVNDGK 471 (487)
Q Consensus 436 ~irf~~dnpG~w~~HCHi~~H~~~GM~~~~~V~~~~ 471 (487)
..-+..-.+|.|.|=|-+.-|...||-+.+.|.+..
T Consensus 154 ~~~~~~l~aG~YwlvC~ipGHA~sGMw~~LiVs~~v 189 (196)
T PF06525_consen 154 SGVYNDLPAGYYWLVCGIPGHAESGMWGVLIVSSNV 189 (196)
T ss_pred eEEEccCCCceEEEEccCCChhhcCCEEEEEEecCc
Confidence 555666689999999999999999999999997653
No 61
>PF06525 SoxE: Sulfocyanin (SoxE); InterPro: IPR010532 Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterised as functionally different are the rusticyanins.
Probab=92.82 E-value=0.15 Score=46.24 Aligned_cols=46 Identities=15% Similarity=0.162 Sum_probs=38.7
Q ss_pred ccCCCCCeEEEEEEeCCCccceeecccccccc-ccceeeEEEeCCCCC
Q 040938 20 CPIQTGQSYVYNFTVTGQRGTLFWHAHISWLR-ATLYGPIVILPKRHA 66 (487)
Q Consensus 20 ~~I~PG~~~~Y~f~~~~~~Gt~wYH~H~~~~~-~Gl~G~liV~~~~~~ 66 (487)
..|.+|++..-.|.. -++|+|||=|-.-+.+ +||++-|+|.+.-..
T Consensus 145 ~GI~~G~s~~~~~~~-l~aG~YwlvC~ipGHA~sGMw~~LiVs~~vt~ 191 (196)
T PF06525_consen 145 NGISSGQSASGVYND-LPAGYYWLVCGIPGHAESGMWGVLIVSSNVTV 191 (196)
T ss_pred CCccCCceeeEEEcc-CCCceEEEEccCCChhhcCCEEEEEEecCccc
Confidence 368899999877763 6899999999998877 899999999987543
No 62
>TIGR02657 amicyanin amicyanin. Members of this family are amicyanin, a type I blue copper protein that accepts electrons from the tryptophan tryptophylquinone (TTQ) cofactor of the methylamine dehydrogenase light chain and then transfers them to the heme group of cytochrome c-551i. Amicyanin, methylamine dehydrogenase, and cytochrome c-551i are periplasmic and form a complex. This system has been studied primarily in Paracoccus denitrificans and Methylobacterium extorquens. Related type I blue copper proteins include plastocyanin, pseudoazurin, halocyanin, etc.
Probab=92.21 E-value=0.17 Score=39.62 Aligned_cols=34 Identities=24% Similarity=0.394 Sum_probs=27.8
Q ss_pred CCCCCeEEEEEEeCCCccceeeccccccccccceeeEEEe
Q 040938 22 IQTGQSYVYNFTVTGQRGTLFWHAHISWLRATLYGPIVIL 61 (487)
Q Consensus 22 I~PG~~~~Y~f~~~~~~Gt~wYH~H~~~~~~Gl~G~liV~ 61 (487)
+.||++|++.| .++|+|=|||=.|. +|.|.++|+
T Consensus 50 ~~~g~~~~~tf---~~~G~y~y~C~~Hp---~M~G~v~V~ 83 (83)
T TIGR02657 50 MKKEQAYSLTF---TEAGTYDYHCTPHP---FMRGKVVVE 83 (83)
T ss_pred cCCCCEEEEEC---CCCEEEEEEcCCCC---CCeEEEEEC
Confidence 56788888877 46999999998766 599999985
No 63
>TIGR03094 sulfo_cyanin sulfocyanin. Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterized as functionally different are the rustacyanins.
Probab=91.54 E-value=0.27 Score=43.86 Aligned_cols=44 Identities=11% Similarity=0.181 Sum_probs=35.0
Q ss_pred cCCCCCeEEEEEEeCCCccceeecccccccc-ccceeeEEEeCCCC
Q 040938 21 PIQTGQSYVYNFTVTGQRGTLFWHAHISWLR-ATLYGPIVILPKRH 65 (487)
Q Consensus 21 ~I~PG~~~~Y~f~~~~~~Gt~wYH~H~~~~~-~Gl~G~liV~~~~~ 65 (487)
.|.+|++-.=.|. +-++|+|||=|-.-+.. +||+|-+||-..-.
T Consensus 145 Gi~~Gqs~sg~~~-~~~~G~YwlvCgipGHAesGMw~~lIVSs~vt 189 (195)
T TIGR03094 145 GISSGHSRSGWWN-DTSAGKYWLVCGITGHAESGMWAVVIVSSNVT 189 (195)
T ss_pred cccccceeEEEec-cCCCeeEEEEcccCChhhcCcEEEEEEecCcc
Confidence 4567788555555 47999999999998776 89999999987654
No 64
>TIGR03094 sulfo_cyanin sulfocyanin. Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterized as functionally different are the rustacyanins.
Probab=91.31 E-value=2 Score=38.44 Aligned_cols=100 Identities=18% Similarity=0.243 Sum_probs=60.6
Q ss_pred CceEEEecCCCEEEEEEeeCCCCCCCCCCeeecCCceEEEEecCCCC-CC--CCCCCCCCC--CCCCccceEEecCCcEE
Q 040938 361 GTRAVALPFNASVEVVMQDTSIIGAESHPLHLHGFNFFVVGQGFGNF-DP--SKDPAKFNL--VDPAERNTVGVPSGGWV 435 (487)
Q Consensus 361 ~~~~~~v~~g~~v~~~l~n~~~~~~~~HP~HlHg~~f~Vl~~g~g~~-~~--~~~~~~~n~--~~p~~rDtv~v~~~~~~ 435 (487)
+...+.++.|-.|.++|.|.. .++| .+-|+..+.... .+ ..+.+.++. ..+.--..=-+..|...
T Consensus 83 G~mtIyiPaGw~V~V~f~N~e---~~pH-------nl~iv~n~t~~P~~~~~s~dgkil~~vG~~~s~~~~NGi~~Gqs~ 152 (195)
T TIGR03094 83 GAMTIYLPAGWNVYVTFTNYE---SLPH-------NLKLLPNSTQTPRGPIWAHTGKIINSTGATTSIYYGNGISSGHSR 152 (195)
T ss_pred CceEEEEeCCCEEEEEEEcCC---CCCc-------cEEEecCCCCCCCccccccCceeEeecccccCcccccccccccee
Confidence 346788999999999999964 3554 445554432110 00 000011100 00000011112345566
Q ss_pred EEEEEcCCCeeEEEeecchhhhhccceEEEEEeCC
Q 040938 436 AIRFLADNPGAWFMHCHLEVHTSWGLKMAWIVNDG 470 (487)
Q Consensus 436 ~irf~~dnpG~w~~HCHi~~H~~~GM~~~~~V~~~ 470 (487)
..-+..--||.+.+=|-+.-|.+.||-+.+.|...
T Consensus 153 sg~~~~~~~G~YwlvCgipGHAesGMw~~lIVSs~ 187 (195)
T TIGR03094 153 SGWWNDTSAGKYWLVCGITGHAESGMWAVVIVSSN 187 (195)
T ss_pred EEEeccCCCeeEEEEcccCChhhcCcEEEEEEecC
Confidence 66677789999999999999999999999998654
No 65
>COG4454 Uncharacterized copper-binding protein [Inorganic ion transport and metabolism]
Probab=90.85 E-value=0.5 Score=41.17 Aligned_cols=74 Identities=16% Similarity=0.259 Sum_probs=53.4
Q ss_pred eeEEEeCCCEEEEEEEecCCCceEEEEEc------CceEEEEEecCcccceeEeeEEEeCCCceEEEEEEecCCCCCcce
Q 040938 127 FKLKVKPGKTYLLRMINAALNDELFFSIA------NHTLTVVETDAVYVKPIKTKVVLITPGQTTNVLLKAKHKSPNASF 200 (487)
Q Consensus 127 ~~~~v~~G~~~rlR~iN~~~~~~~~~~i~------~h~~~via~DG~~v~P~~~~~l~l~pG~R~dv~v~~~~~~~~g~~ 200 (487)
..++++.|+++|+-+.|.+-.. +.|.++ +|.-..+.+|- .+=-..+.+.|.||+...++|++.++ |.|
T Consensus 63 ~~~~v~aG~tv~~v~~n~~el~-hef~~~~~~~~~~~~~~~~~~~D--me~d~~~~v~L~PG~s~elvv~ft~~---g~y 136 (158)
T COG4454 63 SSFEVKAGETVRFVLKNEGELK-HEFTMDAPDKNLEHVTHMILADD--MEHDDPNTVTLAPGKSGELVVVFTGA---GKY 136 (158)
T ss_pred CcccccCCcEEeeeecCcccce-EEEeccCccccchhHHHhhhCCc--cccCCcceeEeCCCCcEEEEEEecCC---ccE
Confidence 4689999999999999998644 455555 22222222331 11124568999999999999999998 999
Q ss_pred EEEecc
Q 040938 201 LIAARP 206 (487)
Q Consensus 201 ~i~~~~ 206 (487)
.+++..
T Consensus 137 e~~C~i 142 (158)
T COG4454 137 EFACNI 142 (158)
T ss_pred EEEecC
Confidence 999864
No 66
>PF00116 COX2: Cytochrome C oxidase subunit II, periplasmic domain This family corresponds to chains b and o.; InterPro: IPR002429 Cytochrome c oxidase (1.9.3.1 from EC) [, ] is an oligomeric enzymatic complex which is a component of the respiratory chain and is involved in the transfer of electrons from cytochrome c to oxygen. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. The number of polypeptides in the complex ranges from 3-4 (prokaryotes), up to 13(mammals). Subunit 2 (CO II) transfers the electrons from cytochrome c to the catalytic subunit 1. It contains two adjacent transmembrane regions in its N terminus and the major part of the protein is exposed to the periplasmic or to the mitochondrial intermembrane space, respectively. CO II provides the substrate-binding site and contains a copper centre called Cu(A), probably the primary acceptor in cytochrome c oxidase. An exception is the corresponding subunit of the cbb3-type oxidase which lacks the copper A redox-centre. Several bacterial CO II have a C-terminal extension that contains a covalently bound haem c.; GO: 0004129 cytochrome-c oxidase activity, 0005507 copper ion binding, 0016020 membrane; PDB: 3OMN_D 3OMA_B 3OMI_D 3OM3_B 3EHB_B 1AR1_B 1QLE_B 3HB3_B 2IWK_B 2IWF_A ....
Probab=89.66 E-value=3.8 Score=34.56 Aligned_cols=74 Identities=16% Similarity=0.293 Sum_probs=52.9
Q ss_pred ceEEEecCCCEEEEEEeeCCCCCCCCCCeeecCCceEEEEecCCCCCCCCCCCCCCCCCCCccceEEecCCcEEEEEEEc
Q 040938 362 TRAVALPFNASVEVVMQDTSIIGAESHPLHLHGFNFFVVGQGFGNFDPSKDPAKFNLVDPAERNTVGVPSGGWVAIRFLA 441 (487)
Q Consensus 362 ~~~~~v~~g~~v~~~l~n~~~~~~~~HP~HlHg~~f~Vl~~g~g~~~~~~~~~~~n~~~p~~rDtv~v~~~~~~~irf~~ 441 (487)
.+.+.++.|+.|.+.+.+.. ..|.|.+-+... -+.+.||....+.|++
T Consensus 45 ~~~l~lp~g~~v~~~ltS~D----ViHsf~ip~~~~----------------------------k~d~~PG~~~~~~~~~ 92 (120)
T PF00116_consen 45 DNELVLPAGQPVRFHLTSED----VIHSFWIPELGI----------------------------KMDAIPGRTNSVTFTP 92 (120)
T ss_dssp SSEEEEETTSEEEEEEEESS----S-EEEEETTCTE----------------------------EEEEBTTCEEEEEEEE
T ss_pred cceecccccceEeEEEEcCC----ccccccccccCc----------------------------ccccccccceeeeeee
Confidence 34688999999999999954 578777764432 3456788889999999
Q ss_pred CCCeeEEEeecchhhhhc-cceEEEEE
Q 040938 442 DNPGAWFMHCHLEVHTSW-GLKMAWIV 467 (487)
Q Consensus 442 dnpG~w~~HCHi~~H~~~-GM~~~~~V 467 (487)
+.||.+-..|...=-... .|.+.+.|
T Consensus 93 ~~~G~y~~~C~e~CG~gH~~M~~~v~V 119 (120)
T PF00116_consen 93 DKPGTYYGQCAEYCGAGHSFMPGKVIV 119 (120)
T ss_dssp SSSEEEEEEE-SSSSTTGGG-EEEEEE
T ss_pred ccCCcEEEcCccccCcCcCCCeEEEEE
Confidence 999999999987655433 34444443
No 67
>TIGR02375 pseudoazurin pseudoazurin. Pseudoazurin, also called cupredoxin, is a small, blue periplasmic protein with a single bound copper atom. Pseudoazurin is related plastocyanins. Several examples of pseudoazurin are encoded by a neighboring gene for, or have been shown to transfer electrons to, copper-containing nitrite reductases (TIGR02376) of the same species.
Probab=89.47 E-value=0.57 Score=39.29 Aligned_cols=38 Identities=8% Similarity=0.062 Sum_probs=28.9
Q ss_pred CCCCeEEEEEEeCCCccceeeccccccccccceeeEEEeCCC
Q 040938 23 QTGQSYVYNFTVTGQRGTLFWHAHISWLRATLYGPIVILPKR 64 (487)
Q Consensus 23 ~PG~~~~Y~f~~~~~~Gt~wYH~H~~~~~~Gl~G~liV~~~~ 64 (487)
.+|++|++.| +.+|+|=|+|= ....+||.|.|+|.++.
T Consensus 53 ~~g~~~~~tF---~~~G~Y~Y~C~-pH~~~GM~G~V~Vg~~~ 90 (116)
T TIGR02375 53 KINEEYTVTV---TEEGVYGVKCT-PHYGMGMVALIQVGDPP 90 (116)
T ss_pred CCCCEEEEEe---CCCEEEEEEcC-CCccCCCEEEEEECCCC
Confidence 3577777777 46999999997 22347999999998853
No 68
>COG3794 PetE Plastocyanin [Energy production and conversion]
Probab=89.21 E-value=2.2 Score=36.30 Aligned_cols=74 Identities=20% Similarity=0.279 Sum_probs=47.3
Q ss_pred EEEecCCCEEEEEEeeCCCCCCCCCCeeecCCceEEEEecCCCCCCCCCCCCCCCCCCCccceEEecCCcEEEEEEEcCC
Q 040938 364 AVALPFNASVEVVMQDTSIIGAESHPLHLHGFNFFVVGQGFGNFDPSKDPAKFNLVDPAERNTVGVPSGGWVAIRFLADN 443 (487)
Q Consensus 364 ~~~v~~g~~v~~~l~n~~~~~~~~HP~HlHg~~f~Vl~~g~g~~~~~~~~~~~n~~~p~~rDtv~v~~~~~~~irf~~dn 443 (487)
.++++.|++|+|+-.. ...|..+.=+-. . |..-+++..-.+.....- ++.
T Consensus 55 ~v~v~pGDTVtw~~~d-----~~~Hnv~~~~~~---------~--------------~~g~~~~~~~~~~s~~~T--fe~ 104 (128)
T COG3794 55 EVTVKPGDTVTWVNTD-----SVGHNVTAVGGM---------D--------------PEGSGTLKAGINESFTHT--FET 104 (128)
T ss_pred EEEECCCCEEEEEECC-----CCCceEEEeCCC---------C--------------cccccccccCCCcceEEE--ecc
Confidence 4688899999997643 236766543322 0 111223333334444444 445
Q ss_pred CeeEEEeecchhhhhccceEEEEEeC
Q 040938 444 PGAWFMHCHLEVHTSWGLKMAWIVND 469 (487)
Q Consensus 444 pG~w~~HCHi~~H~~~GM~~~~~V~~ 469 (487)
||.|.|.|- -|...||-+.+.|++
T Consensus 105 ~G~Y~Y~C~--PH~~~gM~G~IvV~~ 128 (128)
T COG3794 105 PGEYTYYCT--PHPGMGMKGKIVVGE 128 (128)
T ss_pred cceEEEEec--cCCCCCcEEEEEeCC
Confidence 999999995 588999999999853
No 69
>TIGR02866 CoxB cytochrome c oxidase, subunit II. Cytochrome c oxidase is the terminal electron acceptor of mitochondria (and one of several possible acceptors in prokaryotes) in the electron transport chain of aerobic respiration. The enzyme couples the oxidation of reduced cytochrome c with the reduction of molecular oxygen to water. This process results in the pumping of four protons across the membrane which are used in the proton gradient powered synthesis of ATP. The oxidase contains two heme a cofactors and three copper atoms as well as other bound ions.
Probab=87.06 E-value=2.8 Score=38.86 Aligned_cols=74 Identities=18% Similarity=0.330 Sum_probs=55.0
Q ss_pred eEEEecCCCEEEEEEeeCCCCCCCCCCeeecCCceEEEEecCCCCCCCCCCCCCCCCCCCccceEEecCCcEEEEEEEcC
Q 040938 363 RAVALPFNASVEVVMQDTSIIGAESHPLHLHGFNFFVVGQGFGNFDPSKDPAKFNLVDPAERNTVGVPSGGWVAIRFLAD 442 (487)
Q Consensus 363 ~~~~v~~g~~v~~~l~n~~~~~~~~HP~HlHg~~f~Vl~~g~g~~~~~~~~~~~n~~~p~~rDtv~v~~~~~~~irf~~d 442 (487)
+.+.++.|+.|++.+.+.+ ..|.|.+-+. +--..+-||....+.|+++
T Consensus 117 ~~l~vp~g~~v~~~~ts~D----V~Hsf~ip~~----------------------------~~k~da~PG~~~~~~~~~~ 164 (201)
T TIGR02866 117 NELVVPAGTPVRLQVTSKD----VIHSFWVPEL----------------------------GGKIDAIPGQYNALWFNAD 164 (201)
T ss_pred CEEEEEcCCEEEEEEEeCc----hhhccccccc----------------------------CceEEecCCcEEEEEEEeC
Confidence 4578999999999999854 4455544322 1123456788899999999
Q ss_pred CCeeEEEeecc---hhhhhccceEEEEEeCC
Q 040938 443 NPGAWFMHCHL---EVHTSWGLKMAWIVNDG 470 (487)
Q Consensus 443 npG~w~~HCHi---~~H~~~GM~~~~~V~~~ 470 (487)
.||.+...|-. ..| ..|.+.+.|.++
T Consensus 165 ~~G~y~~~c~e~cG~~h--~~M~~~v~v~~~ 193 (201)
T TIGR02866 165 EPGVYYGYCAELCGAGH--SLMLFKVVVVER 193 (201)
T ss_pred CCEEEEEEehhhCCcCc--cCCeEEEEEECH
Confidence 99999999988 445 678888887654
No 70
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=86.75 E-value=7.6 Score=30.30 Aligned_cols=68 Identities=12% Similarity=0.159 Sum_probs=38.8
Q ss_pred EEEEEEEecCCCceEEEEEc-Cc--eEEEEEecCcccc--------eeEeeEEEeCCCceEEEEEEecCCCC-CcceEEE
Q 040938 136 TYLLRMINAALNDELFFSIA-NH--TLTVVETDAVYVK--------PIKTKVVLITPGQTTNVLLKAKHKSP-NASFLIA 203 (487)
Q Consensus 136 ~~rlR~iN~~~~~~~~~~i~-~h--~~~via~DG~~v~--------P~~~~~l~l~pG~R~dv~v~~~~~~~-~g~~~i~ 203 (487)
...|++.|.+. ..+.|.+. |+ .+.|...+|..|- -+......|.|||...+-.+.+.... .|.|.+.
T Consensus 3 ~~~l~v~N~s~-~~v~l~f~sgq~~D~~v~d~~g~~vwrwS~~~~FtQal~~~~l~pGe~~~~~~~~~~~~~~~G~Y~~~ 81 (82)
T PF12690_consen 3 EFTLTVTNNSD-EPVTLQFPSGQRYDFVVKDKEGKEVWRWSDGKMFTQALQEETLEPGESLTYEETWDLKDLSPGEYTLE 81 (82)
T ss_dssp EEEEEEEE-SS-S-EEEEESSS--EEEEEE-TT--EEEETTTT-------EEEEE-TT-EEEEEEEESS----SEEEEEE
T ss_pred EEEEEEEeCCC-CeEEEEeCCCCEEEEEEECCCCCEEEEecCCchhhheeeEEEECCCCEEEEEEEECCCCCCCceEEEe
Confidence 35688888885 45667765 44 4556656777661 23567899999999999999887531 3889876
Q ss_pred e
Q 040938 204 A 204 (487)
Q Consensus 204 ~ 204 (487)
+
T Consensus 82 a 82 (82)
T PF12690_consen 82 A 82 (82)
T ss_dssp E
T ss_pred C
Confidence 4
No 71
>TIGR02695 azurin azurin. Azurin is a blue copper-binding protein in the plastocyanin/azurin family (see Pfam model pfam00127). It serves as a redox partner to enzymes such as nitrite reductase or arsenite oxidase. The most closely related copper-binding proteins to this family are auracyanins, as in Chloroflexus aurantiacus, which have similar redox activities.
Probab=82.60 E-value=9.4 Score=32.23 Aligned_cols=81 Identities=19% Similarity=0.270 Sum_probs=51.9
Q ss_pred eeeEEEeCC-CEEEEEEEecCCCc----eEEEEEc-CceEEEEE-------ecCcccce----eEeeEEEeCCCceEEEE
Q 040938 126 TFKLKVKPG-KTYLLRMINAALND----ELFFSIA-NHTLTVVE-------TDAVYVKP----IKTKVVLITPGQTTNVL 188 (487)
Q Consensus 126 ~~~~~v~~G-~~~rlR~iN~~~~~----~~~~~i~-~h~~~via-------~DG~~v~P----~~~~~l~l~pG~R~dv~ 188 (487)
...|+|+++ +.+.+.|-|.|... .+++-|- .-.+.-|+ .|-.||.+ +...+=.|++||..+|.
T Consensus 15 ~~~i~V~a~~k~vtv~l~h~G~lpk~~MgHN~Vl~k~~d~~~v~~~g~~ag~~~~Yvp~~d~~ViAhTkliggGes~svt 94 (125)
T TIGR02695 15 TKSISVPKSCKEFTVNLKHTGKLPKAVMGHNWVLAKSADMQAVATDGMSAGADNNYVKPGDARVIAHTKVIGGGEKTSVT 94 (125)
T ss_pred ccEEEEcCCCcEEEEEEecCCcCchhccCccEEEeccccHHHHHHHHHhcccccCccCCCCcceEEEccccCCCceEEEE
Confidence 357999984 88999999998532 2232231 11222222 34566743 24456679999999999
Q ss_pred EEecCCCCCcceEEEecc
Q 040938 189 LKAKHKSPNASFLIAARP 206 (487)
Q Consensus 189 v~~~~~~~~g~~~i~~~~ 206 (487)
++++.-.+|++|...++.
T Consensus 95 F~~~~l~~g~~Y~f~CSF 112 (125)
T TIGR02695 95 FDVSKLSAGEDYTFFCSF 112 (125)
T ss_pred EECCCCCCCCcceEEEcC
Confidence 998753334679888863
No 72
>PF00116 COX2: Cytochrome C oxidase subunit II, periplasmic domain This family corresponds to chains b and o.; InterPro: IPR002429 Cytochrome c oxidase (1.9.3.1 from EC) [, ] is an oligomeric enzymatic complex which is a component of the respiratory chain and is involved in the transfer of electrons from cytochrome c to oxygen. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. The number of polypeptides in the complex ranges from 3-4 (prokaryotes), up to 13(mammals). Subunit 2 (CO II) transfers the electrons from cytochrome c to the catalytic subunit 1. It contains two adjacent transmembrane regions in its N terminus and the major part of the protein is exposed to the periplasmic or to the mitochondrial intermembrane space, respectively. CO II provides the substrate-binding site and contains a copper centre called Cu(A), probably the primary acceptor in cytochrome c oxidase. An exception is the corresponding subunit of the cbb3-type oxidase which lacks the copper A redox-centre. Several bacterial CO II have a C-terminal extension that contains a covalently bound haem c.; GO: 0004129 cytochrome-c oxidase activity, 0005507 copper ion binding, 0016020 membrane; PDB: 3OMN_D 3OMA_B 3OMI_D 3OM3_B 3EHB_B 1AR1_B 1QLE_B 3HB3_B 2IWK_B 2IWF_A ....
Probab=82.54 E-value=15 Score=30.87 Aligned_cols=60 Identities=15% Similarity=0.230 Sum_probs=46.5
Q ss_pred eeEEEeCCCEEEEEEEecCCCceEEEEEcCceEEEEEecCcccceeEeeEEEeCCCceEEEEEEecCCCCCcceEEEecc
Q 040938 127 FKLKVKPGKTYLLRMINAALNDELFFSIANHTLTVVETDAVYVKPIKTKVVLITPGQTTNVLLKAKHKSPNASFLIAARP 206 (487)
Q Consensus 127 ~~~~v~~G~~~rlR~iN~~~~~~~~~~i~~h~~~via~DG~~v~P~~~~~l~l~pG~R~dv~v~~~~~~~~g~~~i~~~~ 206 (487)
..+.++.|+.++|++-+.. -.+.|.|.+..+++ .+-||+.-.+-++++++ |.|++++..
T Consensus 46 ~~l~lp~g~~v~~~ltS~D--ViHsf~ip~~~~k~----------------d~~PG~~~~~~~~~~~~---G~y~~~C~e 104 (120)
T PF00116_consen 46 NELVLPAGQPVRFHLTSED--VIHSFWIPELGIKM----------------DAIPGRTNSVTFTPDKP---GTYYGQCAE 104 (120)
T ss_dssp SEEEEETTSEEEEEEEESS--S-EEEEETTCTEEE----------------EEBTTCEEEEEEEESSS---EEEEEEE-S
T ss_pred ceecccccceEeEEEEcCC--ccccccccccCccc----------------ccccccceeeeeeeccC---CcEEEcCcc
Confidence 5799999999999998855 45677887765443 45688888888999887 999999985
Q ss_pred C
Q 040938 207 Y 207 (487)
Q Consensus 207 ~ 207 (487)
+
T Consensus 105 ~ 105 (120)
T PF00116_consen 105 Y 105 (120)
T ss_dssp S
T ss_pred c
Confidence 4
No 73
>COG3794 PetE Plastocyanin [Energy production and conversion]
Probab=80.96 E-value=1.8 Score=36.79 Aligned_cols=36 Identities=17% Similarity=0.189 Sum_probs=27.5
Q ss_pred CCCCeEEEEEEeCCCccceeeccccccccccceeeEEEeC
Q 040938 23 QTGQSYVYNFTVTGQRGTLFWHAHISWLRATLYGPIVILP 62 (487)
Q Consensus 23 ~PG~~~~Y~f~~~~~~Gt~wYH~H~~~~~~Gl~G~liV~~ 62 (487)
.+|++|++.|. .+|+|=|.|-.|. .+||.|.|+|++
T Consensus 93 ~~~~s~~~Tfe---~~G~Y~Y~C~PH~-~~gM~G~IvV~~ 128 (128)
T COG3794 93 GINESFTHTFE---TPGEYTYYCTPHP-GMGMKGKIVVGE 128 (128)
T ss_pred CCCcceEEEec---ccceEEEEeccCC-CCCcEEEEEeCC
Confidence 45577777775 4999999996432 269999999974
No 74
>PF01835 A2M_N: MG2 domain; InterPro: IPR002890 The proteinase-binding alpha-macroglobulins (A2M) [] are large glycoproteins found in the plasma of vertebrates, in the hemolymph of some invertebrates and in reptilian and avian egg white. A2M-like proteins are able to inhibit all four classes of proteinases by a 'trapping' mechanism. They have a peptide stretch, called the 'bait region', which contains specific cleavage sites for different proteinases. When a proteinase cleaves the bait region, a conformational change is induced in the protein, thus trapping the proteinase. The entrapped enzyme remains active against low molecular weight substrates, whilst its activity toward larger substrates is greatly reduced, due to steric hindrance. Following cleavage in the bait region, a thiol ester bond, formed between the side chains of a cysteine and a glutamine, is cleaved and mediates the covalent binding of the A2M-like protein to the proteinase. This family includes the N-terminal region of the alpha-2-macroglobulin family. The inhibitor domains belong to MEROPS inhibitor family I39.; GO: 0004866 endopeptidase inhibitor activity; PDB: 2B39_B 3KLS_B 3PRX_C 3KM9_B 3PVM_C 3CU7_A 4E0S_A 4A5W_A 4ACQ_C 2P9R_B ....
Probab=76.48 E-value=8.3 Score=30.89 Aligned_cols=72 Identities=17% Similarity=0.140 Sum_probs=43.9
Q ss_pred EEeCCCEEEEEEE--ecCCCceEEEEEc--CceEEEEEecCcccceeEeeEEEeCCCceEEEEEEecCCCCCcceEEEec
Q 040938 130 KVKPGKTYLLRMI--NAALNDELFFSIA--NHTLTVVETDAVYVKPIKTKVVLITPGQTTNVLLKAKHKSPNASFLIAAR 205 (487)
Q Consensus 130 ~v~~G~~~rlR~i--N~~~~~~~~~~i~--~h~~~via~DG~~v~P~~~~~l~l~pG~R~dv~v~~~~~~~~g~~~i~~~ 205 (487)
.-+||+++.||++ +..+ .. -... ...++|..-+|..+.-... ........++.-+.+++.+..|.|.|++.
T Consensus 10 iYrPGetV~~~~~~~~~~~-~~--~~~~~~~~~v~i~dp~g~~v~~~~~--~~~~~~G~~~~~~~lp~~~~~G~y~i~~~ 84 (99)
T PF01835_consen 10 IYRPGETVHFRAIVRDLDN-DF--KPPANSPVTVTIKDPSGNEVFRWSV--NTTNENGIFSGSFQLPDDAPLGTYTIRVK 84 (99)
T ss_dssp EE-TTSEEEEEEEEEEECT-TC--SCESSEEEEEEEEETTSEEEEEEEE--EETTCTTEEEEEEE--SS---EEEEEEEE
T ss_pred CcCCCCEEEEEEEEecccc-cc--ccccCCceEEEEECCCCCEEEEEEe--eeeCCCCEEEEEEECCCCCCCEeEEEEEE
Confidence 4579999999999 6662 10 1112 2346677777775532222 24577889999999988766699999987
Q ss_pred c
Q 040938 206 P 206 (487)
Q Consensus 206 ~ 206 (487)
.
T Consensus 85 ~ 85 (99)
T PF01835_consen 85 T 85 (99)
T ss_dssp E
T ss_pred E
Confidence 5
No 75
>COG1622 CyoA Heme/copper-type cytochrome/quinol oxidases, subunit 2 [Energy production and conversion]
Probab=71.67 E-value=23 Score=33.86 Aligned_cols=77 Identities=14% Similarity=0.216 Sum_probs=54.4
Q ss_pred ceEEEecCCCEEEEEEeeCCCCCCCCCCeeecCCceEEEEecCCCCCCCCCCCCCCCCCCCccceEEecCCcEEEEEEEc
Q 040938 362 TRAVALPFNASVEVVMQDTSIIGAESHPLHLHGFNFFVVGQGFGNFDPSKDPAKFNLVDPAERNTVGVPSGGWVAIRFLA 441 (487)
Q Consensus 362 ~~~~~v~~g~~v~~~l~n~~~~~~~~HP~HlHg~~f~Vl~~g~g~~~~~~~~~~~n~~~p~~rDtv~v~~~~~~~irf~~ 441 (487)
.+.+.++.|+.|++.+...+ ..|.|.+-+- +.-+.+-||-...+.+.+
T Consensus 136 ~n~l~lPv~~~V~f~ltS~D----ViHsF~IP~l----------------------------~~k~d~iPG~~~~~~~~~ 183 (247)
T COG1622 136 VNELVLPVGRPVRFKLTSAD----VIHSFWIPQL----------------------------GGKIDAIPGMTTELWLTA 183 (247)
T ss_pred cceEEEeCCCeEEEEEEech----hceeEEecCC----------------------------CceeeecCCceEEEEEec
Confidence 34678999999999998753 4455544432 223455677888899999
Q ss_pred CCCeeEEEeecchhhhh-ccceEEEEEeCC
Q 040938 442 DNPGAWFMHCHLEVHTS-WGLKMAWIVNDG 470 (487)
Q Consensus 442 dnpG~w~~HCHi~~H~~-~GM~~~~~V~~~ 470 (487)
+.+|.|-.+|+..-=.. ..|-+.+.|.+.
T Consensus 184 ~~~G~Y~g~Cae~CG~gH~~M~~~v~vvs~ 213 (247)
T COG1622 184 NKPGTYRGICAEYCGPGHSFMRFKVIVVSQ 213 (247)
T ss_pred CCCeEEEEEcHhhcCCCcccceEEEEEEcH
Confidence 99999999999876443 345556666544
No 76
>TIGR02695 azurin azurin. Azurin is a blue copper-binding protein in the plastocyanin/azurin family (see Pfam model pfam00127). It serves as a redox partner to enzymes such as nitrite reductase or arsenite oxidase. The most closely related copper-binding proteins to this family are auracyanins, as in Chloroflexus aurantiacus, which have similar redox activities.
Probab=67.39 E-value=6.3 Score=33.26 Aligned_cols=40 Identities=18% Similarity=0.233 Sum_probs=33.7
Q ss_pred cCCCCCeEEEEEEeC-CCccc-eeeccccccccccceeeEEE
Q 040938 21 PIQTGQSYVYNFTVT-GQRGT-LFWHAHISWLRATLYGPIVI 60 (487)
Q Consensus 21 ~I~PG~~~~Y~f~~~-~~~Gt-~wYH~H~~~~~~Gl~G~liV 60 (487)
-|.||++.+-.|+++ -++|+ |=|-|-+-+....|.|.|.+
T Consensus 84 liggGes~svtF~~~~l~~g~~Y~f~CSFPGH~~~MkG~l~l 125 (125)
T TIGR02695 84 VIGGGEKTSVTFDVSKLSAGEDYTFFCSFPGHWAMMRGTVKL 125 (125)
T ss_pred ccCCCceEEEEEECCCCCCCCcceEEEcCCCcHHhceEEEeC
Confidence 378999999999985 36886 99999998888889998753
No 77
>PF04151 PPC: Bacterial pre-peptidase C-terminal domain; InterPro: IPR007280 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. This domain is normally found at the C terminus of secreted archaeal and bacterial peptidases, the majority of which belong to MEROPS peptidase families M4 (vibriolysin, IPR001570 from INTERPRO), M9A amd M9B (microbial collangenase, IPR002169 from INTERPRO), M28 (aminopeptidase Ap1, IPR007484 from INTERPRO) and S8 (subtilisin family peptidases, IPR000209 from INTERPRO).; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 4DY5_B 4DXZ_A 4DY3_B 3JQW_A 3JQX_C 1NQJ_B 1NQD_A 2O8O_A 1WMF_A 1WME_A ....
Probab=65.30 E-value=31 Score=25.59 Aligned_cols=66 Identities=11% Similarity=0.221 Sum_probs=37.6
Q ss_pred eeeEEEeCCCEEEEEEEecCCCceEEEEEcCceEEEEEecCcccceeEeeEEEeCCCceEEEEEEecCCCCCcceEEEec
Q 040938 126 TFKLKVKPGKTYLLRMINAALNDELFFSIANHTLTVVETDAVYVKPIKTKVVLITPGQTTNVLLKAKHKSPNASFLIAAR 205 (487)
Q Consensus 126 ~~~~~v~~G~~~rlR~iN~~~~~~~~~~i~~h~~~via~DG~~v~P~~~~~l~l~pG~R~dv~v~~~~~~~~g~~~i~~~ 205 (487)
...|++++|+++++.+-+.+. +..+.|...+|..+....-.. -..+..-.+.+.+.++ |.|+|++.
T Consensus 4 ~y~f~v~ag~~l~i~l~~~~~---------d~dl~l~~~~g~~~~~~d~~~--~~~~~~~~i~~~~~~~---GtYyi~V~ 69 (70)
T PF04151_consen 4 YYSFTVPAGGTLTIDLSGGSG---------DADLYLYDSNGNSLASYDDSS--QSGGNDESITFTAPAA---GTYYIRVY 69 (70)
T ss_dssp EEEEEESTTEEEEEEECETTS---------SEEEEEEETTSSSCEECCCCT--CETTSEEEEEEEESSS---EEEEEEEE
T ss_pred EEEEEEcCCCEEEEEEcCCCC---------CeEEEEEcCCCCchhhheecC--CCCCCccEEEEEcCCC---EEEEEEEE
Confidence 467899999998888866664 334667777765432211111 0112223333455444 89998864
No 78
>PF07691 PA14: PA14 domain; InterPro: IPR011658 The PA14 domain forms an insert in bacterial beta-glucosidases, other glycosidases, glycosyltransferases, proteases, amidases, yeast adhesins and bacterial toxins, including anthrax protective antigen (PA). The domain also occurs in a Dictyostelium pre-spore cell-inducing factor Psi and in fibrocystin, the mammalian protein whose mutation leads to polycystic kidney and hepatic disease. The crystal structure of PA shows that this domain (named PA14 after its location in the PA20 pro-peptide) has a beta-barrel structure. The PA14 domain sequence suggests a binding function, rather than a catalytic role. The PA14 domain distribution is compatible with carbohydrate binding [].; PDB: 2XVG_A 2XVK_A 2XVL_A 2XJU_A 2XJT_A 2XJQ_A 2XJS_A 2XJV_A 2XJP_A 2XJR_A ....
Probab=64.09 E-value=58 Score=27.64 Aligned_cols=62 Identities=11% Similarity=0.101 Sum_probs=44.7
Q ss_pred EEEeCCCEEEEEEEecCCCceEEEEEcCceEEEEEecCccc-------ceeEeeEEEeCCCceEEEEEEecCCC
Q 040938 129 LKVKPGKTYLLRMINAALNDELFFSIANHTLTVVETDAVYV-------KPIKTKVVLITPGQTTNVLLKAKHKS 195 (487)
Q Consensus 129 ~~v~~G~~~rlR~iN~~~~~~~~~~i~~h~~~via~DG~~v-------~P~~~~~l~l~pG~R~dv~v~~~~~~ 195 (487)
|++.....|+|++-..+ ..+|.|+|.. ||+.++..- .+.....+.|..|++|.|.|...+..
T Consensus 54 ~~~~~~G~y~f~~~~~d---~~~l~idg~~--vid~~~~~~~~~~~~~~~~~~~~v~l~~g~~y~i~i~y~~~~ 122 (145)
T PF07691_consen 54 FKPPETGTYTFSLTSDD---GARLWIDGKL--VIDNWGNQGGGFFNSGPSSTSGTVTLEAGGKYPIRIEYFNRG 122 (145)
T ss_dssp EEESSSEEEEEEEEESS---EEEEEETTEE--EEECSCTTTSTTTTTSBCCEEEEEEE-TT-EEEEEEEEEECS
T ss_pred EecccCceEEEEEEecc---cEEEEECCEE--EEcCCccccccccccccceEEEEEEeeCCeeEEEEEEEEECC
Confidence 67777778999998433 4778899877 577776543 35567788999999999999986653
No 79
>COG1470 Predicted membrane protein [Function unknown]
Probab=63.45 E-value=40 Score=34.98 Aligned_cols=76 Identities=12% Similarity=0.265 Sum_probs=52.4
Q ss_pred eeEEEeCCC--EEEEEEEecCCCce--EEEEEcCceEEEEEecCcccceeEeeEEEeCCCceE--EEEEEecCCCCCcce
Q 040938 127 FKLKVKPGK--TYLLRMINAALNDE--LFFSIANHTLTVVETDAVYVKPIKTKVVLITPGQTT--NVLLKAKHKSPNASF 200 (487)
Q Consensus 127 ~~~~v~~G~--~~rlR~iN~~~~~~--~~~~i~~h~~~via~DG~~v~P~~~~~l~l~pG~R~--dv~v~~~~~~~~g~~ 200 (487)
.++++++|+ ..|++|-|.|+... +.+.+++-.=|-+.+|+..+ +. |.||+|- ++-|++++....|+|
T Consensus 389 ~~lt~taGee~~i~i~I~NsGna~LtdIkl~v~~PqgWei~Vd~~~I-----~s--L~pge~~tV~ltI~vP~~a~aGdY 461 (513)
T COG1470 389 YRLTITAGEEKTIRISIENSGNAPLTDIKLTVNGPQGWEIEVDESTI-----PS--LEPGESKTVSLTITVPEDAGAGDY 461 (513)
T ss_pred EEEEecCCccceEEEEEEecCCCccceeeEEecCCccceEEECcccc-----cc--cCCCCcceEEEEEEcCCCCCCCcE
Confidence 578888985 67999999996543 67777776668888877733 22 5566654 455556665556899
Q ss_pred EEEeccCCC
Q 040938 201 LIAARPYAT 209 (487)
Q Consensus 201 ~i~~~~~~~ 209 (487)
.+....-.+
T Consensus 462 ~i~i~~ksD 470 (513)
T COG1470 462 RITITAKSD 470 (513)
T ss_pred EEEEEEeec
Confidence 998776443
No 80
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=62.82 E-value=65 Score=24.43 Aligned_cols=66 Identities=18% Similarity=0.366 Sum_probs=30.8
Q ss_pred EeCCCE--EEEEEEecCCCc--eEEEEEcCceEEEEEecCccc--ceeEeeEEEeCCCceEEEEEEe--cCCCCCcceEE
Q 040938 131 VKPGKT--YLLRMINAALND--ELFFSIANHTLTVVETDAVYV--KPIKTKVVLITPGQTTNVLLKA--KHKSPNASFLI 202 (487)
Q Consensus 131 v~~G~~--~rlR~iN~~~~~--~~~~~i~~h~~~via~DG~~v--~P~~~~~l~l~pG~R~dv~v~~--~~~~~~g~~~i 202 (487)
|++|+. +++.+-|.+... .+.++++ .=+|-.+ .|..+. .|.||+...+-++. ......|+|.|
T Consensus 1 v~~G~~~~~~~tv~N~g~~~~~~v~~~l~-------~P~GW~~~~~~~~~~--~l~pG~s~~~~~~V~vp~~a~~G~y~v 71 (78)
T PF10633_consen 1 VTPGETVTVTLTVTNTGTAPLTNVSLSLS-------LPEGWTVSASPASVP--SLPPGESVTVTFTVTVPADAAPGTYTV 71 (78)
T ss_dssp --TTEEEEEEEEEE--SSS-BSS-EEEEE---------TTSE---EEEEE----B-TTSEEEEEEEEEE-TT--SEEEEE
T ss_pred CCCCCEEEEEEEEEECCCCceeeEEEEEe-------CCCCccccCCccccc--cCCCCCEEEEEEEEECCCCCCCceEEE
Confidence 346654 468888887543 2344443 2344332 344444 78999777665555 44433488988
Q ss_pred Eec
Q 040938 203 AAR 205 (487)
Q Consensus 203 ~~~ 205 (487)
.+.
T Consensus 72 ~~~ 74 (78)
T PF10633_consen 72 TVT 74 (78)
T ss_dssp EEE
T ss_pred EEE
Confidence 765
No 81
>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins.; PDB: 2KUT_A 2L0D_A 3IDU_A 2KL6_A.
Probab=60.92 E-value=78 Score=24.73 Aligned_cols=67 Identities=21% Similarity=0.266 Sum_probs=40.5
Q ss_pred EEeCCCEE--EEEEEecCCCceEEEEEcCceEEEEEecCcccceeEeeEE-EeCCCceEEEEEEecCCCCCcceEEEecc
Q 040938 130 KVKPGKTY--LLRMINAALNDELFFSIANHTLTVVETDAVYVKPIKTKVV-LITPGQTTNVLLKAKHKSPNASFLIAARP 206 (487)
Q Consensus 130 ~v~~G~~~--rlR~iN~~~~~~~~~~i~~h~~~via~DG~~v~P~~~~~l-~l~pG~R~dv~v~~~~~~~~g~~~i~~~~ 206 (487)
.+.+|+.+ .+.+-|.|....-.+.+. +-.||..+ ....| .|.+|+...+-+....+. .|.|.|++..
T Consensus 14 ~~~~g~~~~i~~~V~N~G~~~~~~~~v~------~~~~~~~~---~~~~i~~L~~g~~~~v~~~~~~~~-~G~~~i~~~i 83 (101)
T PF07705_consen 14 NVVPGEPVTITVTVKNNGTADAENVTVR------LYLDGNSV---STVTIPSLAPGESETVTFTWTPPS-PGSYTIRVVI 83 (101)
T ss_dssp EEETTSEEEEEEEEEE-SSS-BEEEEEE------EEETTEEE---EEEEESEB-TTEEEEEEEEEE-SS--CEEEEEEEE
T ss_pred cccCCCEEEEEEEEEECCCCCCCCEEEE------EEECCcee---ccEEECCcCCCcEEEEEEEEEeCC-CCeEEEEEEE
Confidence 45567655 578889987654444432 33455555 33344 789999999988886642 2888888764
No 82
>COG1622 CyoA Heme/copper-type cytochrome/quinol oxidases, subunit 2 [Energy production and conversion]
Probab=55.14 E-value=12 Score=35.82 Aligned_cols=46 Identities=9% Similarity=0.001 Sum_probs=38.3
Q ss_pred cccCCCCCeEEEEEEeCCCccceeecccc-cccc-ccceeeEEEeCCCC
Q 040938 19 QCPIQTGQSYVYNFTVTGQRGTLFWHAHI-SWLR-ATLYGPIVILPKRH 65 (487)
Q Consensus 19 q~~I~PG~~~~Y~f~~~~~~Gt~wYH~H~-~~~~-~Gl~G~liV~~~~~ 65 (487)
|.-.-||...+..+++ ++.|+|.-+|+. .|.. +.|.|.++|.++++
T Consensus 168 k~d~iPG~~~~~~~~~-~~~G~Y~g~Cae~CG~gH~~M~~~v~vvs~~~ 215 (247)
T COG1622 168 KIDAIPGMTTELWLTA-NKPGTYRGICAEYCGPGHSFMRFKVIVVSQED 215 (247)
T ss_pred eeeecCCceEEEEEec-CCCeEEEEEcHhhcCCCcccceEEEEEEcHHH
Confidence 4446789999999996 999999999985 5555 79999999998864
No 83
>smart00758 PA14 domain in bacterial beta-glucosidases other glycosidases, glycosyltransferases, proteases, amidases, yeast adhesins, and bacterial toxins.
Probab=52.76 E-value=99 Score=26.04 Aligned_cols=63 Identities=13% Similarity=0.143 Sum_probs=40.1
Q ss_pred eEEEeCCCEEEEEEEecCCCceEEEEEcCceEEEEEecCccc-ceeEeeEEEeCCCceEEEEEEecCCC
Q 040938 128 KLKVKPGKTYLLRMINAALNDELFFSIANHTLTVVETDAVYV-KPIKTKVVLITPGQTTNVLLKAKHKS 195 (487)
Q Consensus 128 ~~~v~~G~~~rlR~iN~~~~~~~~~~i~~h~~~via~DG~~v-~P~~~~~l~l~pG~R~dv~v~~~~~~ 195 (487)
.|.+.....|+|.+...+ ..+|.|+|.. ||..++..- .+.....+.|..|++|.|.|...+..
T Consensus 51 ~i~~~~~G~y~f~~~~~~---~~~l~Idg~~--vid~~~~~~~~~~~~~~v~l~~g~~~~i~v~y~~~~ 114 (136)
T smart00758 51 YLKPPEDGEYTFSITSDD---GARLWIDGKL--VIDNWGKHEARPSTSSTLYLLAGGTYPIRIEYFEAG 114 (136)
T ss_pred EEECCCCccEEEEEEcCC---cEEEEECCcE--EEcCCccCCCccccceeEEEeCCcEEEEEEEEEeCC
Confidence 356655567999985433 3678888763 555444322 23334568888888888888876543
No 84
>MTH00047 COX2 cytochrome c oxidase subunit II; Provisional
Probab=51.52 E-value=1.3e+02 Score=27.59 Aligned_cols=76 Identities=13% Similarity=0.207 Sum_probs=53.3
Q ss_pred eEEEecCCCEEEEEEeeCCCCCCCCCCeeecCCceEEEEecCCCCCCCCCCCCCCCCCCCccceEEecCCcEEEEEEEcC
Q 040938 363 RAVALPFNASVEVVMQDTSIIGAESHPLHLHGFNFFVVGQGFGNFDPSKDPAKFNLVDPAERNTVGVPSGGWVAIRFLAD 442 (487)
Q Consensus 363 ~~~~v~~g~~v~~~l~n~~~~~~~~HP~HlHg~~f~Vl~~g~g~~~~~~~~~~~n~~~p~~rDtv~v~~~~~~~irf~~d 442 (487)
+.+.++.|+.+++.+...+ -.|.|.+-.... -+.+-||-...+.|.++
T Consensus 116 ~~l~lp~g~~v~~~ltS~D----ViHsf~vp~l~~----------------------------k~d~~PG~~~~~~~~~~ 163 (194)
T MTH00047 116 KPLRLVYGVPYHLLVTSSD----VIHSFSVPDLNL----------------------------KMDAIPGRINHLFFCPD 163 (194)
T ss_pred ceEEEeCCCEEEeeeecCc----cccceeccccCc----------------------------eeecCCCceEEEEEEcC
Confidence 4578899999999998753 567666543321 23344788889999999
Q ss_pred CCeeEEEeecchhhh-hccceEEEEEeCC
Q 040938 443 NPGAWFMHCHLEVHT-SWGLKMAWIVNDG 470 (487)
Q Consensus 443 npG~w~~HCHi~~H~-~~GM~~~~~V~~~ 470 (487)
.+|.+-.-|.-.-=. ...|-..++|.++
T Consensus 164 ~~G~y~g~C~e~CG~~H~~M~~~v~v~~~ 192 (194)
T MTH00047 164 RHGVFVGYCSELCGVGHSYMPIVIEVVDV 192 (194)
T ss_pred CCEEEEEEeehhhCcCcccCcEEEEEEcC
Confidence 999999999865433 3446566666544
No 85
>PF14344 DUF4397: Domain of unknown function (DUF4397)
Probab=49.71 E-value=1.5e+02 Score=24.50 Aligned_cols=38 Identities=11% Similarity=0.217 Sum_probs=21.8
Q ss_pred ceEEEEEecCccc--ceeEeeEEEeCCCceEEEEEEecCC
Q 040938 157 HTLTVVETDAVYV--KPIKTKVVLITPGQTTNVLLKAKHK 194 (487)
Q Consensus 157 h~~~via~DG~~v--~P~~~~~l~l~pG~R~dv~v~~~~~ 194 (487)
++++|...++... .+.....+.|.+|..|.+.+.-...
T Consensus 45 ~~i~v~~~g~~~~~~~~l~~~~i~l~~g~~yTl~~~g~~~ 84 (122)
T PF14344_consen 45 YTIEVTPAGTTPDVSTPLLSTTITLEAGKSYTLFAVGTAA 84 (122)
T ss_pred EEEEEEECCCCCccceEEEeccEEEcCCCEEEEEEECCCC
Confidence 4555544444432 2455566777777777777665543
No 86
>TIGR02866 CoxB cytochrome c oxidase, subunit II. Cytochrome c oxidase is the terminal electron acceptor of mitochondria (and one of several possible acceptors in prokaryotes) in the electron transport chain of aerobic respiration. The enzyme couples the oxidation of reduced cytochrome c with the reduction of molecular oxygen to water. This process results in the pumping of four protons across the membrane which are used in the proton gradient powered synthesis of ATP. The oxidase contains two heme a cofactors and three copper atoms as well as other bound ions.
Probab=48.83 E-value=66 Score=29.65 Aligned_cols=60 Identities=15% Similarity=0.134 Sum_probs=43.4
Q ss_pred eeEEEeCCCEEEEEEEecCCCceEEEEEcCceEEEEEecCcccceeEeeEEEeCCCceEEEEEEecCCCCCcceEEEecc
Q 040938 127 FKLKVKPGKTYLLRMINAALNDELFFSIANHTLTVVETDAVYVKPIKTKVVLITPGQTTNVLLKAKHKSPNASFLIAARP 206 (487)
Q Consensus 127 ~~~~v~~G~~~rlR~iN~~~~~~~~~~i~~h~~~via~DG~~v~P~~~~~l~l~pG~R~dv~v~~~~~~~~g~~~i~~~~ 206 (487)
..+.+..|+.+||++-+... .+.|.+.+... .+..-||..-.+.++++++ |.|..++..
T Consensus 117 ~~l~vp~g~~v~~~~ts~DV--~Hsf~ip~~~~----------------k~da~PG~~~~~~~~~~~~---G~y~~~c~e 175 (201)
T TIGR02866 117 NELVVPAGTPVRLQVTSKDV--IHSFWVPELGG----------------KIDAIPGQYNALWFNADEP---GVYYGYCAE 175 (201)
T ss_pred CEEEEEcCCEEEEEEEeCch--hhcccccccCc----------------eEEecCCcEEEEEEEeCCC---EEEEEEehh
Confidence 47899999999999776543 23444443322 2446689999999998887 999999986
Q ss_pred C
Q 040938 207 Y 207 (487)
Q Consensus 207 ~ 207 (487)
+
T Consensus 176 ~ 176 (201)
T TIGR02866 176 L 176 (201)
T ss_pred h
Confidence 4
No 87
>PF11142 DUF2917: Protein of unknown function (DUF2917); InterPro: IPR021317 This bacterial family of proteins appears to be restricted to Proteobacteria.
Probab=47.85 E-value=55 Score=24.04 Aligned_cols=46 Identities=13% Similarity=0.265 Sum_probs=27.5
Q ss_pred EEEeCCCEEEEEEEecCCCceEEEEEcCceEEEEEecCcccceeEeeEEEeCCCceEE
Q 040938 129 LKVKPGKTYLLRMINAALNDELFFSIANHTLTVVETDAVYVKPIKTKVVLITPGQTTN 186 (487)
Q Consensus 129 ~~v~~G~~~rlR~iN~~~~~~~~~~i~~h~~~via~DG~~v~P~~~~~l~l~pG~R~d 186 (487)
+++.+|+..+||.-... .|.+.+-..+|.. +|. .+-+.|.+||++.
T Consensus 2 ~~L~~g~~~~lr~~~~~-----~l~v~~G~vWlT~-~g~------~~D~~L~~G~~l~ 47 (63)
T PF11142_consen 2 FELAPGETLSLRAAAGQ-----RLRVESGRVWLTR-EGD------PDDYWLQAGDSLR 47 (63)
T ss_pred EEeCCCceEEeEcCCCc-----EEEEccccEEEEC-CCC------CCCEEECCCCEEE
Confidence 56778888888854433 3667666777754 442 3334455555544
No 88
>TIGR01433 CyoA cytochrome o ubiquinol oxidase subunit II. This enzyme catalyzes the oxidation of ubiquinol with the concomitant reduction of molecular oxygen to water. This acts as the terminal electron acceptor in the respiratory chain. Subunit II is responsible for binding and oxidation of the ubiquinone substrate. This sequence is closely related to QoxA, which oxidizes quinol in gram positive bacteria but which is in complex with subunits which utilize cytochromes a in the reduction of molecular oxygen. Slightly more distantly related is subunit II of cytochrome c oxidase which uses cyt. c as the oxidant.
Probab=46.54 E-value=61 Score=30.57 Aligned_cols=75 Identities=20% Similarity=0.328 Sum_probs=50.5
Q ss_pred EEEecCCCEEEEEEeeCCCCCCCCCCeeecCCceEEEEecCCCCCCCCCCCCCCCCCCCccceEEecCCcEEEEEEEcCC
Q 040938 364 AVALPFNASVEVVMQDTSIIGAESHPLHLHGFNFFVVGQGFGNFDPSKDPAKFNLVDPAERNTVGVPSGGWVAIRFLADN 443 (487)
Q Consensus 364 ~~~v~~g~~v~~~l~n~~~~~~~~HP~HlHg~~f~Vl~~g~g~~~~~~~~~~~n~~~p~~rDtv~v~~~~~~~irf~~dn 443 (487)
-+.++.|+.|++.+...+ -.|. |+|-+-+ ..+|.+ ||-...+.|+++.
T Consensus 140 el~lP~g~pV~~~ltS~D----ViHS-------F~VP~l~------------------~K~Dai---PG~~n~~~~~~~~ 187 (226)
T TIGR01433 140 EIAFPVNTPINFKITSNS----VMNS-------FFIPQLG------------------SQIYAM---AGMQTKLHLIANE 187 (226)
T ss_pred eEEEECCCEEEEEEEECc----hhhh-------hhhhhcC------------------CeeecC---CCceEEEEEEeCC
Confidence 468899999999998754 3454 4443321 134443 7888889999999
Q ss_pred CeeEEEeecchhhh-hccceEEEEEeCC
Q 040938 444 PGAWFMHCHLEVHT-SWGLKMAWIVNDG 470 (487)
Q Consensus 444 pG~w~~HCHi~~H~-~~GM~~~~~V~~~ 470 (487)
||.|.-.|--.-=. ...|...+.|.++
T Consensus 188 ~G~y~g~CaE~CG~~Ha~M~~~V~v~~~ 215 (226)
T TIGR01433 188 PGVYDGISANYSGPGFSGMKFKAIATDR 215 (226)
T ss_pred CEEEEEEchhhcCcCccCCeEEEEEECH
Confidence 99999999643322 1456666665543
No 89
>PRK10378 inactive ferrous ion transporter periplasmic protein EfeO; Provisional
Probab=45.76 E-value=24 Score=35.87 Aligned_cols=39 Identities=15% Similarity=0.147 Sum_probs=30.9
Q ss_pred cCCCCCeEEEEEEeCCCccceeeccccccccccceeeEEEeCCC
Q 040938 21 PIQTGQSYVYNFTVTGQRGTLFWHAHISWLRATLYGPIVILPKR 64 (487)
Q Consensus 21 ~I~PG~~~~Y~f~~~~~~Gt~wYH~H~~~~~~Gl~G~liV~~~~ 64 (487)
.|.||.+.++.+++ .+|||=|+|=.+ ..+.|.|+|.+..
T Consensus 81 nIaPG~s~~l~~~L--~pGtY~~~C~~~---~~~~g~l~Vtg~~ 119 (375)
T PRK10378 81 NIAPGFSQKMTANL--QPGEYDMTCGLL---TNPKGKLIVKGEA 119 (375)
T ss_pred ccCCCCceEEEEec--CCceEEeecCcC---CCCCceEEEeCCC
Confidence 68999999988775 699999999332 3458999998754
No 90
>PF15415 DUF4622: Protein of unknown function (DUF4622)
Probab=45.18 E-value=1.3e+02 Score=28.53 Aligned_cols=42 Identities=29% Similarity=0.381 Sum_probs=30.6
Q ss_pred eeEEEeCCCEEEEEEEecCCCce--EEEEEcCceEEEEEecCcccc
Q 040938 127 FKLKVKPGKTYLLRMINAALNDE--LFFSIANHTLTVVETDAVYVK 170 (487)
Q Consensus 127 ~~~~v~~G~~~rlR~iN~~~~~~--~~~~i~~h~~~via~DG~~v~ 170 (487)
..+-+++| +|.||+|.-+-... ..+.| +.-++++|+|+.+.+
T Consensus 94 tPLyl~aG-tY~F~~iSPAka~~~dgk~~I-~NGeYl~aTd~rytq 137 (310)
T PF15415_consen 94 TPLYLNAG-TYYFRMISPAKASNSDGKMNI-DNGEYLYATDNRYTQ 137 (310)
T ss_pred CceEEecc-eEEEEEeccccccccCceEEe-CCceEEEEcCCceeE
Confidence 45778896 79999998763222 33444 567899999999974
No 91
>TIGR01432 QOXA cytochrome aa3 quinol oxidase, subunit II. This enzyme catalyzes the oxidation of quinol with the concomitant reduction of molecular oxygen to water. This acts as the terminal electron acceptor in the respiratory chain. This subunit contains two transmembrane helices and a large external domain responsible for the binding and oxidation of quinol. QuoX is (presently) only found in gram positive bacteria of the Bacillus/Staphylococcus group. Like CyoA, the ubiquinol oxidase found in proteobacteria, the residues responsible for the ligation of Cu(a) and cytochrome c (found in the related cyt. c oxidases) are absent. Unlike CyoA, QoxA is in complex with a subunit I which contains cytochromes a similar to the cyt. c oxidases (as opposed to cytochromes b).
Probab=43.03 E-value=73 Score=29.81 Aligned_cols=74 Identities=12% Similarity=0.067 Sum_probs=48.8
Q ss_pred EEEecCCCEEEEEEeeCCCCCCCCCCeeecCCceEEEEecCCCCCCCCCCCCCCCCCCCccceEEecCCcEEEEEEEcCC
Q 040938 364 AVALPFNASVEVVMQDTSIIGAESHPLHLHGFNFFVVGQGFGNFDPSKDPAKFNLVDPAERNTVGVPSGGWVAIRFLADN 443 (487)
Q Consensus 364 ~~~v~~g~~v~~~l~n~~~~~~~~HP~HlHg~~f~Vl~~g~g~~~~~~~~~~~n~~~p~~rDtv~v~~~~~~~irf~~dn 443 (487)
-+.++.|+.|++.+...+ -.|. |+|=+-+ ..+|. -||-...+.|.++.
T Consensus 131 ~l~iP~g~~v~~~ltS~D----ViHs-------f~vP~l~------------------~k~da---iPG~~~~~~~~~~~ 178 (217)
T TIGR01432 131 YLNIPKDRPVLFKLQSAD----TMTS-------FWIPQLG------------------GQKYA---MTGMTMNWYLQADQ 178 (217)
T ss_pred cEEEECCCEEEEEEECCc----hhhh-------hhchhhC------------------ceeec---CCCceEEEEEEeCC
Confidence 467889999999998753 3454 4442221 13444 47888999999999
Q ss_pred CeeEEEeecchhhh-hccceEEEEEeC
Q 040938 444 PGAWFMHCHLEVHT-SWGLKMAWIVND 469 (487)
Q Consensus 444 pG~w~~HCHi~~H~-~~GM~~~~~V~~ 469 (487)
||.|--.|=-.-=. ..-|...+.|.+
T Consensus 179 ~G~y~g~Cae~CG~~Hs~M~~~v~v~~ 205 (217)
T TIGR01432 179 VGTYRGRNANFNGEGFADQTFDVNAVS 205 (217)
T ss_pred CEEEEEEehhhcCccccCCeEEEEEeC
Confidence 99999999543211 224555555543
No 92
>PF14874 PapD-like: Flagellar-associated PapD-like
Probab=42.08 E-value=1.7e+02 Score=23.12 Aligned_cols=60 Identities=18% Similarity=0.354 Sum_probs=35.4
Q ss_pred EEeCCCEE--EEEEEecCCCceEEEEEc--C---ceEEEEEecCcccceeEeeEEEeCCCceEEEEEEecCCCCCcceE
Q 040938 130 KVKPGKTY--LLRMINAALNDELFFSIA--N---HTLTVVETDAVYVKPIKTKVVLITPGQTTNVLLKAKHKSPNASFL 201 (487)
Q Consensus 130 ~v~~G~~~--rlR~iN~~~~~~~~~~i~--~---h~~~via~DG~~v~P~~~~~l~l~pG~R~dv~v~~~~~~~~g~~~ 201 (487)
++..|++| .+.|.|.|... .+|++. . ..|.+ +| ..-.|+||+..++.|.+....+-|.|.
T Consensus 15 ~v~~g~~~~~~v~l~N~s~~p-~~f~v~~~~~~~~~~~v--------~~---~~g~l~PG~~~~~~V~~~~~~~~g~~~ 81 (102)
T PF14874_consen 15 NVFVGQTYSRTVTLTNTSSIP-ARFRVRQPESLSSFFSV--------EP---PSGFLAPGESVELEVTFSPTKPLGDYE 81 (102)
T ss_pred EEccCCEEEEEEEEEECCCCC-EEEEEEeCCcCCCCEEE--------EC---CCCEECCCCEEEEEEEEEeCCCCceEE
Confidence 44556666 59999998644 444443 2 11222 22 234599999999999988322125553
No 93
>COG3354 FlaG Putative archaeal flagellar protein G [Cell motility and secretion]
Probab=41.63 E-value=1.8e+02 Score=25.28 Aligned_cols=64 Identities=22% Similarity=0.340 Sum_probs=43.8
Q ss_pred CEEEEEEEecCCCceEEEEEcCceEEEEEecCcccceeEe-------eEEEeCCCceE-EEEEEecCCCCCcceEEEec
Q 040938 135 KTYLLRMINAALNDELFFSIANHTLTVVETDAVYVKPIKT-------KVVLITPGQTT-NVLLKAKHKSPNASFLIAAR 205 (487)
Q Consensus 135 ~~~rlR~iN~~~~~~~~~~i~~h~~~via~DG~~v~P~~~-------~~l~l~pG~R~-dv~v~~~~~~~~g~~~i~~~ 205 (487)
.+|-|-+-|.|... +.++...++|+ +||.++.|..+ +.+.|.|||-- +|.|.-... |...+...
T Consensus 70 ~t~t~yiKNtG~~~---~~fd~~sitVl-iDG~iv~~a~~~~~~~~gs~i~l~PG~Vg~ev~vn~~lS---Gyhri~V~ 141 (154)
T COG3354 70 YTYTFYIKNTGSDS---IAFDNTSITVL-IDGNIVTPAYVTFTSVNGSSIRLSPGQVGREVTVNEALS---GYHRIVVS 141 (154)
T ss_pred eEEEEEEecCCCcc---cccCCCeEEEE-EcCcEeccceEEEEecCCCeeEecCCceeeEEEeccCCC---cceEEEEE
Confidence 47889999999743 56788888876 79998876433 46779999977 544443332 55555544
No 94
>MTH00140 COX2 cytochrome c oxidase subunit II; Provisional
Probab=40.96 E-value=1.4e+02 Score=28.09 Aligned_cols=76 Identities=13% Similarity=0.257 Sum_probs=53.2
Q ss_pred ceEEEecCCCEEEEEEeeCCCCCCCCCCeeecCCceEEEEecCCCCCCCCCCCCCCCCCCCccceEEecCCcEEEEEEEc
Q 040938 362 TRAVALPFNASVEVVMQDTSIIGAESHPLHLHGFNFFVVGQGFGNFDPSKDPAKFNLVDPAERNTVGVPSGGWVAIRFLA 441 (487)
Q Consensus 362 ~~~~~v~~g~~v~~~l~n~~~~~~~~HP~HlHg~~f~Vl~~g~g~~~~~~~~~~~n~~~p~~rDtv~v~~~~~~~irf~~ 441 (487)
.+.+.++.|+.|++.+.+.+ -.|.|.+=... =.+.+-||....+.|.+
T Consensus 139 ~n~l~lP~~~~v~~~~ts~D----ViHsf~ip~~~----------------------------~k~d~~Pg~~~~~~~~~ 186 (228)
T MTH00140 139 DNRLVLPYSVDTRVLVTSAD----VIHSWTVPSLG----------------------------VKVDAIPGRLNQLSFEP 186 (228)
T ss_pred CCeEEEeeCcEEEEEEEcCc----cccceeccccC----------------------------ceeECCCCcceeEEEEe
Confidence 34678999999999999854 45555443221 12445578888899999
Q ss_pred CCCeeEEEeecchhhhh-ccceEEEEEeC
Q 040938 442 DNPGAWFMHCHLEVHTS-WGLKMAWIVND 469 (487)
Q Consensus 442 dnpG~w~~HCHi~~H~~-~GM~~~~~V~~ 469 (487)
+.||.+...|.-.-... ..|-..++|.+
T Consensus 187 ~~~g~y~~~C~e~CG~~H~~M~~~v~v~~ 215 (228)
T MTH00140 187 KRPGVFYGQCSEICGANHSFMPIVVEAVP 215 (228)
T ss_pred CCCEEEEEECccccCcCcCCCeEEEEEEC
Confidence 99999999998766553 44555555543
No 95
>cd00918 Der-p2_like Several group 2 allergen proteins belong to the ML domain family. They include Dermatophagoides pteronyssinus, group 2 (Der p 2) and D. farinae, group 2 (Der f 2) allergens. These house dust mites cause heavy atopic diseases such as asthma and dermatitis. Although the allergenic properties of these proteins have been well characterized, their biological function in mites is unknown.
Probab=38.90 E-value=35 Score=28.72 Aligned_cols=23 Identities=43% Similarity=0.935 Sum_probs=18.3
Q ss_pred CCCCCCcccccCCCCCeEEEEEEe
Q 040938 11 ADGPAYITQCPIQTGQSYVYNFTV 34 (487)
Q Consensus 11 ~DGv~~vtq~~I~PG~~~~Y~f~~ 34 (487)
.||=-++ .|||..|+.++|.+..
T Consensus 65 ~daC~~l-~CPl~~G~~~~y~~~~ 87 (120)
T cd00918 65 TDGCKYV-KCPIKKGQHYDIKYTW 87 (120)
T ss_pred CCCcccE-eCCCcCCcEEEEEEee
Confidence 5664333 7999999999999986
No 96
>PTZ00047 cytochrome c oxidase subunit II; Provisional
Probab=38.73 E-value=2e+02 Score=25.61 Aligned_cols=75 Identities=12% Similarity=0.157 Sum_probs=50.2
Q ss_pred eEEEecCCCEEEEEEeeCCCCCCCCCCeeecCCceEEEEecCCCCCCCCCCCCCCCCCCCccceEEecCCcEEEEEEEcC
Q 040938 363 RAVALPFNASVEVVMQDTSIIGAESHPLHLHGFNFFVVGQGFGNFDPSKDPAKFNLVDPAERNTVGVPSGGWVAIRFLAD 442 (487)
Q Consensus 363 ~~~~v~~g~~v~~~l~n~~~~~~~~HP~HlHg~~f~Vl~~g~g~~~~~~~~~~~n~~~p~~rDtv~v~~~~~~~irf~~d 442 (487)
+.+.++.|+.|++.+.... -.|.|.+-... --+.+.||-...+.|.++
T Consensus 73 n~LvLP~g~~Vr~~lTS~D----VIHSF~VP~lg----------------------------vK~DavPGr~n~l~~~~~ 120 (162)
T PTZ00047 73 KRLTLPTRTHIRFLITATD----VIHSWSVPSLG----------------------------IKADAIPGRLHKINTFIL 120 (162)
T ss_pred CCEEEeCCCEEEEEEEeCc----cceeeeccccC----------------------------ceeeccCCceEEEEEecC
Confidence 3467899999999998753 45665554321 123344777788899999
Q ss_pred CCeeEEEeecchhhhh-ccceEEEEEeC
Q 040938 443 NPGAWFMHCHLEVHTS-WGLKMAWIVND 469 (487)
Q Consensus 443 npG~w~~HCHi~~H~~-~GM~~~~~V~~ 469 (487)
.+|.+...|.-+-=.. ..|-..+.|..
T Consensus 121 ~~G~y~gqCsElCG~gHs~M~~~V~vvs 148 (162)
T PTZ00047 121 REGVFYGQCSEMCGTLHGFMPIVVEAVS 148 (162)
T ss_pred CCeEEEEEcchhcCcCccCceEEEEEeC
Confidence 9999999998644222 23555555543
No 97
>COG4263 NosZ Nitrous oxide reductase [Energy production and conversion]
Probab=38.24 E-value=1e+02 Score=32.03 Aligned_cols=43 Identities=21% Similarity=0.355 Sum_probs=30.5
Q ss_pred eEEecCCcEEEEEEEcCCCeeEEEeecchhhh-hccceEEEEEe
Q 040938 426 TVGVPSGGWVAIRFLADNPGAWFMHCHLEVHT-SWGLKMAWIVN 468 (487)
Q Consensus 426 tv~v~~~~~~~irf~~dnpG~w~~HCHi~~H~-~~GM~~~~~V~ 468 (487)
.+.+-|....++-|.+|.||.|++-|--.-|. ..-|.+-++|+
T Consensus 593 ~~~v~pq~tasvtf~a~kpgv~w~ycs~fchalh~em~~rmlve 636 (637)
T COG4263 593 NMEVKPQRTASVTFYADKPGVAWYYCSWFCHALHMEMAGRMLVE 636 (637)
T ss_pred EEEEccCCceEEEEEccCCeeeehhhhhHHHHHHHhhccceeec
Confidence 45666778888999999999999988655552 44455545543
No 98
>PRK10378 inactive ferrous ion transporter periplasmic protein EfeO; Provisional
Probab=36.06 E-value=1.5e+02 Score=30.30 Aligned_cols=38 Identities=21% Similarity=0.230 Sum_probs=26.9
Q ss_pred EecCCcEEEEEEEcCCCeeEEEeecchhhhhccceEEEEEeCC
Q 040938 428 GVPSGGWVAIRFLADNPGAWFMHCHLEVHTSWGLKMAWIVNDG 470 (487)
Q Consensus 428 ~v~~~~~~~irf~~dnpG~w~~HCHi~~H~~~GM~~~~~V~~~ 470 (487)
.|.||....+.+.. .||.|-|+| ..| ..|-+.|.|..+
T Consensus 81 nIaPG~s~~l~~~L-~pGtY~~~C--~~~--~~~~g~l~Vtg~ 118 (375)
T PRK10378 81 NIAPGFSQKMTANL-QPGEYDMTC--GLL--TNPKGKLIVKGE 118 (375)
T ss_pred ccCCCCceEEEEec-CCceEEeec--CcC--CCCCceEEEeCC
Confidence 56677655555555 699999999 446 446788988754
No 99
>PF11614 FixG_C: IG-like fold at C-terminal of FixG, putative oxidoreductase; PDB: 2R39_A.
Probab=34.09 E-value=1.3e+02 Score=24.80 Aligned_cols=49 Identities=16% Similarity=0.274 Sum_probs=27.6
Q ss_pred EEEEEEEecCCCc-eEEEEEcCce-EEEEEecCcccceeEeeEEEeCCCceEEEEEEecC
Q 040938 136 TYLLRMINAALND-ELFFSIANHT-LTVVETDAVYVKPIKTKVVLITPGQTTNVLLKAKH 193 (487)
Q Consensus 136 ~~rlR~iN~~~~~-~~~~~i~~h~-~~via~DG~~v~P~~~~~l~l~pG~R~dv~v~~~~ 193 (487)
.|+|+|+|-+... .+.++++|.+ +++. . ..+.+.|.+|+..++-|....
T Consensus 34 ~Y~lkl~Nkt~~~~~~~i~~~g~~~~~l~-------~--~~~~i~v~~g~~~~~~v~v~~ 84 (118)
T PF11614_consen 34 QYTLKLTNKTNQPRTYTISVEGLPGAELQ-------G--PENTITVPPGETREVPVFVTA 84 (118)
T ss_dssp EEEEEEEE-SSS-EEEEEEEES-SS-EE--------E--S--EEEE-TT-EEEEEEEEEE
T ss_pred EEEEEEEECCCCCEEEEEEEecCCCeEEE-------C--CCcceEECCCCEEEEEEEEEE
Confidence 6889999998654 4777777642 3331 1 246788899988877666543
No 100
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=32.65 E-value=37 Score=26.46 Aligned_cols=34 Identities=24% Similarity=0.507 Sum_probs=19.9
Q ss_pred CCCCCCC---cccccCCCCCeEEEEEEeCCC---ccceee
Q 040938 10 WADGPAY---ITQCPIQTGQSYVYNFTVTGQ---RGTLFW 43 (487)
Q Consensus 10 ~~DGv~~---vtq~~I~PG~~~~Y~f~~~~~---~Gt~wY 43 (487)
|+||-.. +.+--|.||++.+|++..+.. +|+|..
T Consensus 41 wS~~~~FtQal~~~~l~pGe~~~~~~~~~~~~~~~G~Y~~ 80 (82)
T PF12690_consen 41 WSDGKMFTQALQEETLEPGESLTYEETWDLKDLSPGEYTL 80 (82)
T ss_dssp TTTT-------EEEEE-TT-EEEEEEEESS----SEEEEE
T ss_pred ecCCchhhheeeEEEECCCCEEEEEEEECCCCCCCceEEE
Confidence 4555432 234458999999999999733 688853
No 101
>PRK13211 N-acetylglucosamine-binding protein A; Reviewed
Probab=32.61 E-value=3.7e+02 Score=28.52 Aligned_cols=22 Identities=18% Similarity=0.321 Sum_probs=19.0
Q ss_pred eeeEEEeCCCEEEEEEEecCCC
Q 040938 126 TFKLKVKPGKTYLLRMINAALN 147 (487)
Q Consensus 126 ~~~~~v~~G~~~rlR~iN~~~~ 147 (487)
.|..+++.|++++||+.+++..
T Consensus 210 ~~~~~l~~Gd~V~~RvFd~~Ge 231 (478)
T PRK13211 210 NPSMDLKAGDKVMTRVFDANGE 231 (478)
T ss_pred ccCCCCCCCCEEEEEEecCCCc
Confidence 3667899999999999999854
No 102
>PF14392 zf-CCHC_4: Zinc knuckle
Probab=30.39 E-value=70 Score=22.04 Aligned_cols=41 Identities=20% Similarity=0.306 Sum_probs=30.7
Q ss_pred CCCCccce-EEecCCcEEEEEEEcCCCeeEEEeecchhhhhc
Q 040938 419 VDPAERNT-VGVPSGGWVAIRFLADNPGAWFMHCHLEVHTSW 459 (487)
Q Consensus 419 ~~p~~rDt-v~v~~~~~~~irf~~dnpG~w~~HCHi~~H~~~ 459 (487)
..|..+-+ |..+.|+...++++......+=+||...-|.+.
T Consensus 4 ~kPL~~~i~v~~~~g~~~~~~v~YE~lp~~C~~C~~~gH~~~ 45 (49)
T PF14392_consen 4 SKPLRREIKVKFPEGESFWVKVKYERLPRFCFHCGRIGHSDK 45 (49)
T ss_pred CCcccceEEEEeCCCcEEEEEEEECCcChhhcCCCCcCcCHh
Confidence 34444443 334568888999999999999999999999753
No 103
>MTH00129 COX2 cytochrome c oxidase subunit II; Provisional
Probab=29.85 E-value=1.9e+02 Score=27.39 Aligned_cols=76 Identities=13% Similarity=0.256 Sum_probs=51.3
Q ss_pred ceEEEecCCCEEEEEEeeCCCCCCCCCCeeecCCceEEEEecCCCCCCCCCCCCCCCCCCCccceEEecCCcEEEEEEEc
Q 040938 362 TRAVALPFNASVEVVMQDTSIIGAESHPLHLHGFNFFVVGQGFGNFDPSKDPAKFNLVDPAERNTVGVPSGGWVAIRFLA 441 (487)
Q Consensus 362 ~~~~~v~~g~~v~~~l~n~~~~~~~~HP~HlHg~~f~Vl~~g~g~~~~~~~~~~~n~~~p~~rDtv~v~~~~~~~irf~~ 441 (487)
.+-+.++.|+.|++.+...+ -. |.|+|-+-| ...| +-||....+.|.+
T Consensus 139 ~n~lvlP~~~~v~~~~tS~D----Vi-------Hsf~ip~~~------------------~k~d---a~PG~~~~~~~~~ 186 (230)
T MTH00129 139 DHRMVVPVESPIRVLVSAED----VL-------HSWAVPALG------------------VKMD---AVPGRLNQTAFIA 186 (230)
T ss_pred cceEEEecCcEEEEEEEeCc----cc-------cceeccccC------------------Cccc---cCCCceEEEEEEe
Confidence 34578899999999998754 33 356664432 1233 3478888899999
Q ss_pred CCCeeEEEeecchhhh-hccceEEEEEeC
Q 040938 442 DNPGAWFMHCHLEVHT-SWGLKMAWIVND 469 (487)
Q Consensus 442 dnpG~w~~HCHi~~H~-~~GM~~~~~V~~ 469 (487)
+.||.+...|.-.--. ...|-..++|.+
T Consensus 187 ~~~G~~~g~C~e~CG~~H~~M~~~v~vv~ 215 (230)
T MTH00129 187 SRPGVFYGQCSEICGANHSFMPIVVEAVP 215 (230)
T ss_pred CCceEEEEEChhhccccccCCcEEEEEEC
Confidence 9999999999874433 244555555543
No 104
>PRK10525 cytochrome o ubiquinol oxidase subunit II; Provisional
Probab=28.56 E-value=1.5e+02 Score=29.58 Aligned_cols=73 Identities=19% Similarity=0.258 Sum_probs=48.8
Q ss_pred EEEecCCCEEEEEEeeCCCCCCCCCCeeecCCceEEEEecCCCCCCCCCCCCCCCCCCCccceEEecCCcEEEEEEEcCC
Q 040938 364 AVALPFNASVEVVMQDTSIIGAESHPLHLHGFNFFVVGQGFGNFDPSKDPAKFNLVDPAERNTVGVPSGGWVAIRFLADN 443 (487)
Q Consensus 364 ~~~v~~g~~v~~~l~n~~~~~~~~HP~HlHg~~f~Vl~~g~g~~~~~~~~~~~n~~~p~~rDtv~v~~~~~~~irf~~dn 443 (487)
-+.++.|+.|++.+...+ ..|. |+|-+- +--+..-||-...+.|.+|.
T Consensus 152 eL~iP~g~pV~f~lTS~D----ViHS-------F~IP~L---------------------g~K~damPG~~n~l~~~a~~ 199 (315)
T PRK10525 152 EIAFPANVPVYFKVTSNS----VMNS-------FFIPRL---------------------GSQIYAMAGMQTRLHLIANE 199 (315)
T ss_pred cEEEecCCEEEEEEEEch----hhhh-------hhhhhh---------------------CCeeecCCCceeEEEEEcCC
Confidence 467889999999998754 3454 444322 22333447888899999999
Q ss_pred CeeEEEeecchhhhh-ccceEEEEEe
Q 040938 444 PGAWFMHCHLEVHTS-WGLKMAWIVN 468 (487)
Q Consensus 444 pG~w~~HCHi~~H~~-~GM~~~~~V~ 468 (487)
||.|.-.|--.-=.. ..|...+.+.
T Consensus 200 ~G~Y~G~CaEyCG~gHs~M~f~v~v~ 225 (315)
T PRK10525 200 PGTYDGISASYSGPGFSGMKFKAIAT 225 (315)
T ss_pred CEEEEEEChhhcCccccCCeEEEEEE
Confidence 999999996543222 3455555554
No 105
>MTH00139 COX2 cytochrome c oxidase subunit II; Provisional
Probab=28.05 E-value=2.1e+02 Score=26.97 Aligned_cols=75 Identities=13% Similarity=0.337 Sum_probs=49.8
Q ss_pred ceEEEecCCCEEEEEEeeCCCCCCCCCCeeecCCceEEEEecCCCCCCCCCCCCCCCCCCCccceEEecCCcEEEEEEEc
Q 040938 362 TRAVALPFNASVEVVMQDTSIIGAESHPLHLHGFNFFVVGQGFGNFDPSKDPAKFNLVDPAERNTVGVPSGGWVAIRFLA 441 (487)
Q Consensus 362 ~~~~~v~~g~~v~~~l~n~~~~~~~~HP~HlHg~~f~Vl~~g~g~~~~~~~~~~~n~~~p~~rDtv~v~~~~~~~irf~~ 441 (487)
.+.+.++.|+.|++.+...+ -.|.|.+- +-+ ..+|.+ ||-...+.|.+
T Consensus 139 ~n~l~lP~~~~v~~~~tS~D----ViHsf~vP-------~l~------------------~K~Dai---PG~~n~~~~~~ 186 (226)
T MTH00139 139 DNRLVLPYKSNIRALITAAD----VLHSWTVP-------SLG------------------VKIDAV---PGRLNQVGFFI 186 (226)
T ss_pred CceEEEecCCEEEEEEecCc----cccceecc-------ccC------------------ccccCC---CCcEEEEEEEc
Confidence 45678999999999998743 45655443 221 135554 67888899999
Q ss_pred CCCeeEEEeecchhhhhc-cceEEEEEe
Q 040938 442 DNPGAWFMHCHLEVHTSW-GLKMAWIVN 468 (487)
Q Consensus 442 dnpG~w~~HCHi~~H~~~-GM~~~~~V~ 468 (487)
+.||.+.--|--+-=... -|-..++|.
T Consensus 187 ~~~G~y~g~CsE~CG~~Hs~M~~~v~vv 214 (226)
T MTH00139 187 NRPGVFYGQCSEICGANHSFMPIVVEAI 214 (226)
T ss_pred CCCEEEEEEChhhcCcCcCCCeEEEEEe
Confidence 999999999965443333 344444443
No 106
>PF10989 DUF2808: Protein of unknown function (DUF2808); InterPro: IPR021256 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=27.95 E-value=63 Score=28.12 Aligned_cols=27 Identities=26% Similarity=0.425 Sum_probs=20.7
Q ss_pred EecCCcEEEEEEEc-CCC---eeEEEeecch
Q 040938 428 GVPSGGWVAIRFLA-DNP---GAWFMHCHLE 454 (487)
Q Consensus 428 ~v~~~~~~~irf~~-dnp---G~w~~HCHi~ 454 (487)
.|+||..++|.++. .|| |.|.|+|-..
T Consensus 98 PV~pG~tv~V~l~~v~NP~~~G~Y~f~v~a~ 128 (146)
T PF10989_consen 98 PVPPGTTVTVVLSPVRNPRSGGTYQFNVTAF 128 (146)
T ss_pred CCCCCCEEEEEEEeeeCCCCCCeEEEEEEEE
Confidence 36789999999954 565 8999998643
No 107
>MTH00185 COX2 cytochrome c oxidase subunit II; Provisional
Probab=27.59 E-value=3.7e+02 Score=25.38 Aligned_cols=74 Identities=14% Similarity=0.322 Sum_probs=49.7
Q ss_pred ceEEEecCCCEEEEEEeeCCCCCCCCCCeeecCCceEEEEecCCCCCCCCCCCCCCCCCCCccceEEecCCcEEEEEEEc
Q 040938 362 TRAVALPFNASVEVVMQDTSIIGAESHPLHLHGFNFFVVGQGFGNFDPSKDPAKFNLVDPAERNTVGVPSGGWVAIRFLA 441 (487)
Q Consensus 362 ~~~~~v~~g~~v~~~l~n~~~~~~~~HP~HlHg~~f~Vl~~g~g~~~~~~~~~~~n~~~p~~rDtv~v~~~~~~~irf~~ 441 (487)
.+.+.++.|+.+++.+...+ -.|. |+|-+-| --+..-||....+.+.+
T Consensus 139 ~n~lvlP~~~~v~~~~tS~D----ViHs-------f~iP~lg---------------------~k~daiPG~~~~~~~~~ 186 (230)
T MTH00185 139 DHRMVVPMESPIRVLITAED----VLHS-------WTVPALG---------------------VKMDAVPGRLNQATFII 186 (230)
T ss_pred CCeEEEecCCEEEEEEEcCc----cccc-------ccccccC---------------------ceeEecCCceEEEEEEe
Confidence 34578899999999998754 3444 4443322 12334478888889999
Q ss_pred CCCeeEEEeecchhhhhccc-eEEEEE
Q 040938 442 DNPGAWFMHCHLEVHTSWGL-KMAWIV 467 (487)
Q Consensus 442 dnpG~w~~HCHi~~H~~~GM-~~~~~V 467 (487)
+.||.+.--|.-.--..... -..++|
T Consensus 187 ~~~G~~~g~Cse~CG~~Hs~M~~~v~v 213 (230)
T MTH00185 187 SRPGLYYGQCSEICGANHSFMPIVVEA 213 (230)
T ss_pred CCcEEEEEEchhhcCcCcCCCeEEEEE
Confidence 99999999998765554444 344443
No 108
>PF14524 Wzt_C: Wzt C-terminal domain; PDB: 2R5O_B.
Probab=27.57 E-value=2.4e+02 Score=23.48 Aligned_cols=74 Identities=12% Similarity=0.055 Sum_probs=41.6
Q ss_pred EEeCCCEEEEEEEecCCCceEEEEEcCceEEEEEecCcccce----eEeeEEEeCCCceEEEEEEecCCCCCcceEEEec
Q 040938 130 KVKPGKTYLLRMINAALNDELFFSIANHTLTVVETDAVYVKP----IKTKVVLITPGQTTNVLLKAKHKSPNASFLIAAR 205 (487)
Q Consensus 130 ~v~~G~~~rlR~iN~~~~~~~~~~i~~h~~~via~DG~~v~P----~~~~~l~l~pG~R~dv~v~~~~~~~~g~~~i~~~ 205 (487)
.+..|+.+++||-=......-.+. ..+.|...+|..+-- .....+....++++.+.++++..-..|.|.|.+.
T Consensus 30 ~~~~ge~~~i~i~~~~~~~i~~~~---~~~~i~~~~g~~v~~~~t~~~~~~~~~~~~g~~~~~~~i~~~L~~G~Y~i~v~ 106 (142)
T PF14524_consen 30 SFESGEPIRIRIDYEVNEDIDDPV---FGFAIRDSDGQRVFGTNTYDSGFPIPLSEGGTYEVTFTIPKPLNPGEYSISVG 106 (142)
T ss_dssp SEETTSEEEEEEEEEESS-EEEEE---EEEEEEETT--EEEEEEHHHHT--EEE-TT-EEEEEEEEE--B-SEEEEEEEE
T ss_pred EEeCCCEEEEEEEEEECCCCCccE---EEEEEEcCCCCEEEEECccccCccccccCCCEEEEEEEEcCccCCCeEEEEEE
Confidence 466788888887655544443333 356777778866621 1122455555999999988877422399999876
Q ss_pred c
Q 040938 206 P 206 (487)
Q Consensus 206 ~ 206 (487)
-
T Consensus 107 l 107 (142)
T PF14524_consen 107 L 107 (142)
T ss_dssp E
T ss_pred E
Confidence 4
No 109
>PRK05461 apaG CO2+/MG2+ efflux protein ApaG; Reviewed
Probab=27.01 E-value=1.9e+02 Score=24.62 Aligned_cols=49 Identities=8% Similarity=0.192 Sum_probs=29.4
Q ss_pred EEEEEEEecCCCceEEEEEcCceEEEEEecCcccc----eeEeeEEEeCCCceEEE
Q 040938 136 TYLLRMINAALNDELFFSIANHTLTVVETDAVYVK----PIKTKVVLITPGQTTNV 187 (487)
Q Consensus 136 ~~rlR~iN~~~~~~~~~~i~~h~~~via~DG~~v~----P~~~~~l~l~pG~R~dv 187 (487)
.|++||-|.+.. .+.|-+..+.|...||...+ -+.-..=.|.|||.+.-
T Consensus 32 ~Y~ItI~N~~~~---~vQL~~R~W~I~d~~g~~~~V~G~GVVG~qP~L~PGe~F~Y 84 (127)
T PRK05461 32 AYTITIENLGRV---PVQLLSRHWLITDANGRVQEVRGEGVVGEQPVLAPGESFEY 84 (127)
T ss_pred EEEEEEEECCCC---CEEEEeeeEEEEECCCCEEEEECCceecCCceECCCCCeEE
Confidence 578999998753 35666777777777765321 11112224777775543
No 110
>PF04379 DUF525: Protein of unknown function (DUF525); InterPro: IPR007474 This domain is found in the bacterial protein ApaG and at the C termini of some F-box proteins (IPR001810 from INTERPRO). F-box proteins contain a carboxy-terminal domain that interacts with protein substrates []. The ApaG domain is ~125 amino acids in length, and is named after the bacterial ApaG protein, of which it forms the core. The Salmonella typhimurium ApaG domain protein, CorD, is involved in Co(2+) resistance and Mg(2+) efflux. Tertiary structures from different ApaG proteins show a fold of several beta-sheets. The ApaG domain may be involved in protein-protein interactions which could be implicated in substrate-specificity [, , ].; PDB: 2F1E_A 1XVS_A 1TZA_A 1XQ4_D.
Probab=26.86 E-value=1.2e+02 Score=24.17 Aligned_cols=49 Identities=12% Similarity=0.270 Sum_probs=24.8
Q ss_pred EEEEEEEecCCCceEEEEEcCceEEEEEecCcccc---e-eEeeEEEeCCCceEEE
Q 040938 136 TYLLRMINAALNDELFFSIANHTLTVVETDAVYVK---P-IKTKVVLITPGQTTNV 187 (487)
Q Consensus 136 ~~rlR~iN~~~~~~~~~~i~~h~~~via~DG~~v~---P-~~~~~l~l~pG~R~dv 187 (487)
.|++||-|.+.. .+.|-...+.|...||..-+ + +.-..=.|.|||.+.-
T Consensus 15 ~Y~I~I~N~~~~---~vqL~sR~W~I~d~~g~~~~V~G~GVVG~~P~L~pGe~f~Y 67 (90)
T PF04379_consen 15 AYRIRIENHSDE---SVQLLSRHWIITDADGHVEEVEGEGVVGQQPVLAPGESFEY 67 (90)
T ss_dssp EEEEEEEE-SSS----EEEEEEEEEEEETTS-EEEEEEESBTTB--EE-TTEEEEE
T ss_pred EEEEEEEECCCC---CEEEEccEEEEEeCCCCEEEEECCceEccCceECCCCcEEE
Confidence 588999999875 35555566666666653210 0 0001224778885544
No 111
>MTH00098 COX2 cytochrome c oxidase subunit II; Validated
Probab=26.79 E-value=3.9e+02 Score=25.16 Aligned_cols=75 Identities=13% Similarity=0.283 Sum_probs=50.4
Q ss_pred ceEEEecCCCEEEEEEeeCCCCCCCCCCeeecCCceEEEEecCCCCCCCCCCCCCCCCCCCccceEEecCCcEEEEEEEc
Q 040938 362 TRAVALPFNASVEVVMQDTSIIGAESHPLHLHGFNFFVVGQGFGNFDPSKDPAKFNLVDPAERNTVGVPSGGWVAIRFLA 441 (487)
Q Consensus 362 ~~~~~v~~g~~v~~~l~n~~~~~~~~HP~HlHg~~f~Vl~~g~g~~~~~~~~~~~n~~~p~~rDtv~v~~~~~~~irf~~ 441 (487)
.+.+.++.|+.|++.+...+ -.| .|+|-+-| =-+..-||....+.|.+
T Consensus 139 ~n~lvlP~~~~v~~~~tS~D----ViH-------sf~ip~lg---------------------~k~daiPG~~~~~~~~~ 186 (227)
T MTH00098 139 DNRVVLPMEMPIRMLISSED----VLH-------SWAVPSLG---------------------LKTDAIPGRLNQTTLMS 186 (227)
T ss_pred cceEEecCCCEEEEEEEECc----ccc-------cccccccc---------------------cceecCCCceEEEEEec
Confidence 34678999999999998754 344 44443222 12334478888899999
Q ss_pred CCCeeEEEeecchhhhhc-cceEEEEEe
Q 040938 442 DNPGAWFMHCHLEVHTSW-GLKMAWIVN 468 (487)
Q Consensus 442 dnpG~w~~HCHi~~H~~~-GM~~~~~V~ 468 (487)
+.||.+..-|.-.--... -|-..++|.
T Consensus 187 ~~~G~~~g~Cse~CG~~H~~M~~~v~v~ 214 (227)
T MTH00098 187 TRPGLYYGQCSEICGSNHSFMPIVLELV 214 (227)
T ss_pred CCcEEEEEECccccCcCcCCceEEEEEe
Confidence 999999999987555433 344444443
No 112
>PF10989 DUF2808: Protein of unknown function (DUF2808); InterPro: IPR021256 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=26.65 E-value=1.7e+02 Score=25.32 Aligned_cols=32 Identities=19% Similarity=0.544 Sum_probs=23.8
Q ss_pred eCCCceEEEEEE-ecCCCCCcceEEEeccCCCC
Q 040938 179 ITPGQTTNVLLK-AKHKSPNASFLIAARPYATG 210 (487)
Q Consensus 179 l~pG~R~dv~v~-~~~~~~~g~~~i~~~~~~~~ 210 (487)
|.||+.+.|.++ ..++..+|.|...+..+..+
T Consensus 99 V~pG~tv~V~l~~v~NP~~~G~Y~f~v~a~p~G 131 (146)
T PF10989_consen 99 VPPGTTVTVVLSPVRNPRSGGTYQFNVTAFPPG 131 (146)
T ss_pred CCCCCEEEEEEEeeeCCCCCCeEEEEEEEECCC
Confidence 689999999994 44555568898888765544
No 113
>cd08058 MPN_euk_mb Mpr1p, Pad1p N-terminal (MPN) domains with catalytic isopeptidase activity (metal-binding); eukaryotic. This family contains eukaryotic MPN (also known as Mov34, PAD-1, JAMM, JAB, MPN+) domains found in proteins with a variety of functions, including AMSH (associated molecule with the Src homology 3 domain (SH3) of STAM), H2A-DUB (histone H2A deubiquitinase), BRCC36 (BRCA1/BRCA2-containing complex subunit 36), as well as Rpn11 (regulatory particle number 11) and CSN5 (COP9 signalosome complex subunit 5). These domains contain the signature JAB1/MPN/Mov34 metalloenzyme (JAMM) motif, EXnHS/THX7SXXD, which is involved in zinc ion coordination and provides the active site for isopeptidase activity. Rpn11 is responsible for substrate deubiquitination during proteasomal degradation. It is essential for maintaining a correct cell cycle and normal mitochondrial morphology and physiology. CSN5 is critical for nuclear export and the degradation of several tumor suppressor prot
Probab=26.46 E-value=26 Score=29.27 Aligned_cols=6 Identities=33% Similarity=1.010 Sum_probs=5.7
Q ss_pred eecccc
Q 040938 42 FWHAHI 47 (487)
Q Consensus 42 wYH~H~ 47 (487)
|||||.
T Consensus 70 ~YHSHP 75 (119)
T cd08058 70 WYHSHP 75 (119)
T ss_pred EEecCC
Confidence 999997
No 114
>PF03459 TOBE: TOBE domain; InterPro: IPR005116 The TOBE domain [] (Transport-associated OB) always occurs as a dimer as the C-terminal strand of each domain is supplied by the partner. It is probably involved in the recognition of small ligands such as molybdenum (P46930 from SWISSPROT) and sulphate (P16676 from SWISSPROT), and is found in ABC transporters immediately after the ATPase domain.; GO: 0005215 transporter activity, 0005524 ATP binding, 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0006810 transport, 0043190 ATP-binding cassette (ABC) transporter complex; PDB: 1G29_2 1H9M_B 1H9J_A 1H9K_A 1H9R_B 1O7L_C 1H9S_A 1B9N_A 1B9M_A 1GUS_C ....
Probab=25.80 E-value=41 Score=24.24 Aligned_cols=50 Identities=16% Similarity=0.242 Sum_probs=29.5
Q ss_pred EEEEecCCCceEEEEEcCceEEEEEecCcccceeEeeEEEeCCCceEEEEEEecC
Q 040938 139 LRMINAALNDELFFSIANHTLTVVETDAVYVKPIKTKVVLITPGQTTNVLLKAKH 193 (487)
Q Consensus 139 lR~iN~~~~~~~~~~i~~h~~~via~DG~~v~P~~~~~l~l~pG~R~dv~v~~~~ 193 (487)
.++-+.+....+.+.+.+.. .+.+. +.+.....+.|.+|+++-+.|+..+
T Consensus 12 ~~ie~~g~~~~v~~~~~~~~-~l~a~----it~~~~~~L~L~~G~~V~~~ik~~~ 61 (64)
T PF03459_consen 12 ESIENLGSEVEVTLDLGGGE-TLTAR----ITPESAEELGLKPGDEVYASIKASS 61 (64)
T ss_dssp EEEEESSSEEEEEEEETTSE-EEEEE----EEHHHHHHCT-STT-EEEEEE-GGG
T ss_pred EEEEECCCeEEEEEEECCCC-EEEEE----EcHHHHHHcCCCCCCEEEEEEehhh
Confidence 44556666666677777666 22222 2334456788999999999998753
No 115
>PF14326 DUF4384: Domain of unknown function (DUF4384)
Probab=24.82 E-value=3.2e+02 Score=20.92 Aligned_cols=24 Identities=17% Similarity=0.192 Sum_probs=14.6
Q ss_pred EeCCCEEEEEEEecCCCceEEEEE
Q 040938 131 VKPGKTYLLRMINAALNDELFFSI 154 (487)
Q Consensus 131 v~~G~~~rlR~iN~~~~~~~~~~i 154 (487)
.+.|++++|++-..-....+-|.+
T Consensus 3 ~~~Ge~v~~~~~~~~~~Yl~l~~~ 26 (83)
T PF14326_consen 3 YRVGERVRFRVTSNRDGYLYLFYI 26 (83)
T ss_pred ccCCCEEEEEEEeCCCeEEEEEEE
Confidence 457888888877644433344444
No 116
>cd00912 ML The ML (MD-2-related lipid-recognition) domain is present in MD-1, MD-2, GM2 activator protein, Niemann-Pick type C2 (Npc2) protein, phosphatidylinositol/phosphatidylglycerol transfer protein (PG/PI-TP), mite allergen Der p 2 and several proteins of unknown function in plants, animals and fungi. These single-domain proteins form two anti-parallel beta-pleated sheets stabilized by three disulfide bonds and with an accessible central hydrophobic cavity, and are predicted to mediate diverse biological functions through interaction with specific lipids.
Probab=24.64 E-value=62 Score=27.22 Aligned_cols=18 Identities=44% Similarity=0.912 Sum_probs=15.5
Q ss_pred ccccCCCCCeEEEEEEeC
Q 040938 18 TQCPIQTGQSYVYNFTVT 35 (487)
Q Consensus 18 tq~~I~PG~~~~Y~f~~~ 35 (487)
..|||.+|+.++|.+...
T Consensus 78 ~~CPl~~G~~~~~~~~~~ 95 (127)
T cd00912 78 SFCPLRKGQQYSYAKTVN 95 (127)
T ss_pred ccCCcCCCCEEEEEEEEe
Confidence 379999999999998763
No 117
>COG2967 ApaG Uncharacterized protein affecting Mg2+/Co2+ transport [Inorganic ion transport and metabolism]
Probab=24.46 E-value=45 Score=27.80 Aligned_cols=22 Identities=23% Similarity=0.306 Sum_probs=17.2
Q ss_pred CCCCCcccccCCCCCeEEEEEEe
Q 040938 12 DGPAYITQCPIQTGQSYVYNFTV 34 (487)
Q Consensus 12 DGv~~vtq~~I~PG~~~~Y~f~~ 34 (487)
.||-|- |.-|.||++|+|.=-+
T Consensus 66 ~GVVGe-QP~l~PG~~y~YtSg~ 87 (126)
T COG2967 66 EGVVGE-QPLLAPGEEYQYTSGC 87 (126)
T ss_pred Cceecc-ccccCCCCceEEcCCc
Confidence 577664 8889999999996433
No 118
>MTH00038 COX2 cytochrome c oxidase subunit II; Provisional
Probab=23.96 E-value=3.7e+02 Score=25.39 Aligned_cols=69 Identities=12% Similarity=0.321 Sum_probs=49.0
Q ss_pred ceEEEecCCCEEEEEEeeCCCCCCCCCCeeecCCceEEEEecCCCCCCCCCCCCCCCCCCCccceEEecCCcEEEEEEEc
Q 040938 362 TRAVALPFNASVEVVMQDTSIIGAESHPLHLHGFNFFVVGQGFGNFDPSKDPAKFNLVDPAERNTVGVPSGGWVAIRFLA 441 (487)
Q Consensus 362 ~~~~~v~~g~~v~~~l~n~~~~~~~~HP~HlHg~~f~Vl~~g~g~~~~~~~~~~~n~~~p~~rDtv~v~~~~~~~irf~~ 441 (487)
.+.+.++.|+.+++.+...+ -.|.|.+-.... ..|. -||....+.|.+
T Consensus 139 dn~lvlP~~~~v~~~~tS~D----ViHsf~iP~lg~-------------------------k~da---iPG~~~~~~~~~ 186 (229)
T MTH00038 139 DNRLVLPYQTPIRVLVSSAD----VLHSWAVPSLGV-------------------------KMDA---VPGRLNQTTFFI 186 (229)
T ss_pred CceEEEecCeEEEEEEEECC----ccccccccccCc-------------------------eeec---CCCceEEEEEEc
Confidence 34678999999999998753 456655543211 2343 478888899999
Q ss_pred CCCeeEEEeecchhhhhccce
Q 040938 442 DNPGAWFMHCHLEVHTSWGLK 462 (487)
Q Consensus 442 dnpG~w~~HCHi~~H~~~GM~ 462 (487)
+.||.+..-|--.--.....|
T Consensus 187 ~~~G~~~g~Cse~CG~~Hs~M 207 (229)
T MTH00038 187 SRTGLFYGQCSEICGANHSFM 207 (229)
T ss_pred CCCEEEEEEcccccCcCcCCC
Confidence 999999999987665544444
No 119
>PF13464 DUF4115: Domain of unknown function (DUF4115)
Probab=23.57 E-value=1.5e+02 Score=22.48 Aligned_cols=37 Identities=8% Similarity=0.167 Sum_probs=22.3
Q ss_pred eEEEeCCCEEEEEEEecCCCceEEEEEcCceEEEEEecCc
Q 040938 128 KLKVKPGKTYLLRMINAALNDELFFSIANHTLTVVETDAV 167 (487)
Q Consensus 128 ~~~v~~G~~~rlR~iN~~~~~~~~~~i~~h~~~via~DG~ 167 (487)
.++++.++.+++|+-|+++ ..+.++|....+.+..|.
T Consensus 31 ~~~~~~~~~~~i~iGna~~---v~v~~nG~~~~~~~~~~~ 67 (77)
T PF13464_consen 31 TKTFEGKEPFRIRIGNAGA---VEVTVNGKPVDLLGPPGQ 67 (77)
T ss_pred EEEEeCCCCEEEEEeCCCc---EEEEECCEECCCCCCCCc
Confidence 4555555667777777764 456666666555444443
No 120
>TIGR02745 ccoG_rdxA_fixG cytochrome c oxidase accessory protein FixG. Member of this ferredoxin-like protein family are found exclusively in species with an operon encoding the cbb3 type of cytochrome c oxidase (cco-cbb3), and near the cco-cbb3 operon in about half the cases. The cco-cbb3 is found in a variety of proteobacteria and almost nowhere else, and is associated with oxygen use under microaerobic conditions. Some (but not all) of these proteobacteria are also nitrogen-fixing, hence the gene symbol fixG. FixG was shown essential for functional cco-cbb3 expression in Bradyrhizobium japonicum.
Probab=23.51 E-value=2.5e+02 Score=29.42 Aligned_cols=51 Identities=14% Similarity=0.318 Sum_probs=33.1
Q ss_pred EEEEEEEecCCCc-eEEEEEcCceEEEEEecCcccceeEeeEEEeCCCceEEEEEEecCC
Q 040938 136 TYLLRMINAALND-ELFFSIANHTLTVVETDAVYVKPIKTKVVLITPGQTTNVLLKAKHK 194 (487)
Q Consensus 136 ~~rlR~iN~~~~~-~~~~~i~~h~~~via~DG~~v~P~~~~~l~l~pG~R~dv~v~~~~~ 194 (487)
.|+++|+|.+... .+.++++|.+ |.-++- ..+.+.|.|||+.++.|....+
T Consensus 349 ~Y~~~i~Nk~~~~~~~~l~v~g~~-------~~~~~~-~~~~i~v~~g~~~~~~v~v~~~ 400 (434)
T TIGR02745 349 TYTLKILNKTEQPHEYYLSVLGLP-------GIKIEG-PGAPIHVKAGEKVKLPVFLRTP 400 (434)
T ss_pred EEEEEEEECCCCCEEEEEEEecCC-------CcEEEc-CCceEEECCCCEEEEEEEEEec
Confidence 6889999988543 5777776643 221210 0127899999998777666443
No 121
>MTH00117 COX2 cytochrome c oxidase subunit II; Provisional
Probab=23.42 E-value=4.6e+02 Score=24.65 Aligned_cols=74 Identities=12% Similarity=0.319 Sum_probs=50.2
Q ss_pred ceEEEecCCCEEEEEEeeCCCCCCCCCCeeecCCceEEEEecCCCCCCCCCCCCCCCCCCCccceEEecCCcEEEEEEEc
Q 040938 362 TRAVALPFNASVEVVMQDTSIIGAESHPLHLHGFNFFVVGQGFGNFDPSKDPAKFNLVDPAERNTVGVPSGGWVAIRFLA 441 (487)
Q Consensus 362 ~~~~~v~~g~~v~~~l~n~~~~~~~~HP~HlHg~~f~Vl~~g~g~~~~~~~~~~~n~~~p~~rDtv~v~~~~~~~irf~~ 441 (487)
.+.+.++.|+.|++.+...+ -.| .|+|-+-| --+..-||....+.|.+
T Consensus 139 ~n~lvlP~~~~v~~~~tS~D----ViH-------sf~vP~lg---------------------~K~DavPG~~n~~~~~~ 186 (227)
T MTH00117 139 DHRMVIPMESPIRILITAED----VLH-------SWAVPSLG---------------------VKTDAVPGRLNQTSFIT 186 (227)
T ss_pred cceEEEecCceEEEEEEecc----hhh-------cccccccC---------------------ceeEecCCceEEEEEEE
Confidence 34678999999999998754 344 45443322 12334478888899999
Q ss_pred CCCeeEEEeecchhhhhccce-EEEEE
Q 040938 442 DNPGAWFMHCHLEVHTSWGLK-MAWIV 467 (487)
Q Consensus 442 dnpG~w~~HCHi~~H~~~GM~-~~~~V 467 (487)
+.||.+.--|--+--.....| ..++|
T Consensus 187 ~~~G~y~g~CsE~CG~~Hs~M~~~v~v 213 (227)
T MTH00117 187 TRPGVFYGQCSEICGANHSFMPIVVES 213 (227)
T ss_pred cccceEEEEeccccccCccCCeEEEEE
Confidence 999999999987655544444 33433
No 122
>MTH00008 COX2 cytochrome c oxidase subunit II; Validated
Probab=23.21 E-value=5e+02 Score=24.48 Aligned_cols=75 Identities=15% Similarity=0.286 Sum_probs=51.3
Q ss_pred ceEEEecCCCEEEEEEeeCCCCCCCCCCeeecCCceEEEEecCCCCCCCCCCCCCCCCCCCccceEEecCCcEEEEEEEc
Q 040938 362 TRAVALPFNASVEVVMQDTSIIGAESHPLHLHGFNFFVVGQGFGNFDPSKDPAKFNLVDPAERNTVGVPSGGWVAIRFLA 441 (487)
Q Consensus 362 ~~~~~v~~g~~v~~~l~n~~~~~~~~HP~HlHg~~f~Vl~~g~g~~~~~~~~~~~n~~~p~~rDtv~v~~~~~~~irf~~ 441 (487)
.+-+.++.|+.|++.+.+.+ -.|.|.+-+... -+..-||....+.|.+
T Consensus 139 dn~lvlP~~~~v~~~~tS~D----ViHsf~vP~~~~----------------------------k~daiPG~~~~~~~~~ 186 (228)
T MTH00008 139 DNRAVLPMQTEIRVLVTAAD----VIHSWTVPSLGV----------------------------KVDAVPGRLNQIGFTI 186 (228)
T ss_pred CceEEEecCCEEEEEEEeCC----ccccccccccCc----------------------------ceecCCCceEEEEEEe
Confidence 34678899999999999854 455554443321 2334478888889999
Q ss_pred CCCeeEEEeecchhhhhc-cceEEEEEe
Q 040938 442 DNPGAWFMHCHLEVHTSW-GLKMAWIVN 468 (487)
Q Consensus 442 dnpG~w~~HCHi~~H~~~-GM~~~~~V~ 468 (487)
+.||.+..-|.-.--... -|-..++|.
T Consensus 187 ~~~G~~~g~Cse~CG~~Hs~M~~~v~vv 214 (228)
T MTH00008 187 TRPGVFYGQCSEICGANHSFMPIVLEAV 214 (228)
T ss_pred CCCEEEEEEChhhcCcCccCceeEEEEE
Confidence 999999999976655433 444444443
No 123
>KOG4063 consensus Major epididymal secretory protein HE1 [Function unknown]
Probab=23.09 E-value=63 Score=28.20 Aligned_cols=17 Identities=29% Similarity=0.837 Sum_probs=15.6
Q ss_pred cccCCCCCeEEEEEEeC
Q 040938 19 QCPIQTGQSYVYNFTVT 35 (487)
Q Consensus 19 q~~I~PG~~~~Y~f~~~ 35 (487)
-||+.+|++++|.+..+
T Consensus 107 ~CPl~age~ytY~~slp 123 (158)
T KOG4063|consen 107 YCPLSAGEDYTYLNSLP 123 (158)
T ss_pred cCcccCCCceEEEEEee
Confidence 69999999999999884
No 124
>PF14016 DUF4232: Protein of unknown function (DUF4232)
Probab=23.02 E-value=2.9e+02 Score=23.25 Aligned_cols=56 Identities=16% Similarity=0.220 Sum_probs=38.9
Q ss_pred EEEEEEEecCCCceEEEEEcCce-EEEEEecCcccc-e-----eEeeEEEeCCCceEEEEEEecCC
Q 040938 136 TYLLRMINAALNDELFFSIANHT-LTVVETDAVYVK-P-----IKTKVVLITPGQTTNVLLKAKHK 194 (487)
Q Consensus 136 ~~rlR~iN~~~~~~~~~~i~~h~-~~via~DG~~v~-P-----~~~~~l~l~pG~R~dv~v~~~~~ 194 (487)
.++|.|-|.|.... .|.|.+ +..+..||..+. + -....+.|.||+.....|.....
T Consensus 21 ~~~l~~tN~s~~~C---~l~G~P~v~~~~~~g~~~~~~~~~~~~~~~~vtL~PG~sA~a~l~~~~~ 83 (131)
T PF14016_consen 21 HATLTFTNTSDTPC---TLYGYPGVALVDADGAPLGVPAVREGPPPRPVTLAPGGSAYAGLRWSNV 83 (131)
T ss_pred EEEEEEEECCCCcE---EeccCCcEEEECCCCCcCCccccccCCCCCcEEECCCCEEEEEEEEecC
Confidence 56899999997544 333332 555588888552 1 13457999999999999988764
No 125
>MTH00047 COX2 cytochrome c oxidase subunit II; Provisional
Probab=22.84 E-value=3.1e+02 Score=25.16 Aligned_cols=59 Identities=17% Similarity=0.256 Sum_probs=40.5
Q ss_pred eEEEeCCCEEEEEEEecCCCceEEEEEcCceEEEEEecCcccceeEeeEEEeCCCceEEEEEEecCCCCCcceEEEeccC
Q 040938 128 KLKVKPGKTYLLRMINAALNDELFFSIANHTLTVVETDAVYVKPIKTKVVLITPGQTTNVLLKAKHKSPNASFLIAARPY 207 (487)
Q Consensus 128 ~~~v~~G~~~rlR~iN~~~~~~~~~~i~~h~~~via~DG~~v~P~~~~~l~l~pG~R~dv~v~~~~~~~~g~~~i~~~~~ 207 (487)
.+.+..|+.+||++-... -.+.|.+.+...+ +..-||..-.+.++++++ |.|..++..+
T Consensus 117 ~l~lp~g~~v~~~ltS~D--ViHsf~vp~l~~k----------------~d~~PG~~~~~~~~~~~~---G~y~g~C~e~ 175 (194)
T MTH00047 117 PLRLVYGVPYHLLVTSSD--VIHSFSVPDLNLK----------------MDAIPGRINHLFFCPDRH---GVFVGYCSEL 175 (194)
T ss_pred eEEEeCCCEEEeeeecCc--cccceeccccCce----------------eecCCCceEEEEEEcCCC---EEEEEEeehh
Confidence 477788888888775443 3445555543322 334588888888888877 9999998754
No 126
>KOG1555 consensus 26S proteasome regulatory complex, subunit RPN11 [Posttranslational modification, protein turnover, chaperones]
Probab=22.69 E-value=32 Score=33.92 Aligned_cols=8 Identities=25% Similarity=0.592 Sum_probs=6.6
Q ss_pred eeeccccc
Q 040938 41 LFWHAHIS 48 (487)
Q Consensus 41 ~wYH~H~~ 48 (487)
=|||||.+
T Consensus 119 GWYHSHP~ 126 (316)
T KOG1555|consen 119 GWYHSHPG 126 (316)
T ss_pred eeccCCCC
Confidence 39999965
No 127
>PF02221 E1_DerP2_DerF2: ML domain; InterPro: IPR003172 The MD-2-related lipid-recognition (ML) domain is implicated in lipid recognition, particularly in the recognition of pathogen related products. It has an immunoglobulin-like beta-sandwich fold similar to that of E-set Ig domains. This domain is present in the following proteins: Epididymal secretory protein E1 (also known as Niemann-Pick C2 protein), which is known to bind cholesterol. Niemann-Pick disease type C2 is a fatal hereditary disease characterised by accumulation of low-density lipoprotein-derived cholesterol in lysosomes []. House-dust mite allergen proteins such as Der f 2 from Dermatophagoides farinae and Der p 2 from Dermatophagoides pteronyssinus []. ; PDB: 2AG9_B 1G13_B 2AG2_B 2AG4_A 1TJJ_C 1PU5_C 1PUB_A 2AF9_A 3T6Q_D 3M7O_B ....
Probab=22.44 E-value=63 Score=27.17 Aligned_cols=17 Identities=41% Similarity=1.122 Sum_probs=14.6
Q ss_pred ccccCCCCCeEEEEEEe
Q 040938 18 TQCPIQTGQSYVYNFTV 34 (487)
Q Consensus 18 tq~~I~PG~~~~Y~f~~ 34 (487)
..|||.+|+.++|.+.+
T Consensus 84 ~~CPi~~G~~~~~~~~~ 100 (134)
T PF02221_consen 84 LSCPIKAGEYYTYTYTI 100 (134)
T ss_dssp TTSTBTTTEEEEEEEEE
T ss_pred ccCccCCCcEEEEEEEE
Confidence 38999999988888876
No 128
>COG3241 Azurin [Energy production and conversion]
Probab=22.12 E-value=1e+02 Score=25.88 Aligned_cols=40 Identities=20% Similarity=0.311 Sum_probs=29.8
Q ss_pred cccce----eEeeEEEeCCCceEEEEEEecCCCCCcceEEEecc
Q 040938 167 VYVKP----IKTKVVLITPGQTTNVLLKAKHKSPNASFLIAARP 206 (487)
Q Consensus 167 ~~v~P----~~~~~l~l~pG~R~dv~v~~~~~~~~g~~~i~~~~ 206 (487)
.||+| +...+-.|+-|||.++-++...-.+|-.|.+-++.
T Consensus 93 dYvkpdD~RViAHTklIGgGE~~S~Tfd~~kL~~g~~Y~FfCtF 136 (151)
T COG3241 93 DYVKPDDARVIAHTKLIGGGEETSLTFDPAKLADGVEYKFFCTF 136 (151)
T ss_pred ccCCCCCcceEEEeeeecCCccceEecCHHHhcCCceEEEEEec
Confidence 56765 33467789999999999998776554578877763
No 129
>PF05938 Self-incomp_S1: Plant self-incompatibility protein S1; InterPro: IPR010264 This family consists of a series of plant proteins which are related to the Papaver rhoeas S1 self-incompatibility protein. Self-incompatibility (SI) is the single most important outbreeding device found in angiosperms and is a mechanism that regulates the acceptance or rejection of pollen. S1 is known to exhibit specific pollen-inhibitory properties [].
Probab=21.85 E-value=1.8e+02 Score=23.62 Aligned_cols=42 Identities=17% Similarity=0.153 Sum_probs=33.4
Q ss_pred eEEecCCcEEEEEEEcCCCeeEEEeecchhhhhccc--eEEEEEeCC
Q 040938 426 TVGVPSGGWVAIRFLADNPGAWFMHCHLEVHTSWGL--KMAWIVNDG 470 (487)
Q Consensus 426 tv~v~~~~~~~irf~~dnpG~w~~HCHi~~H~~~GM--~~~~~V~~~ 470 (487)
...|.+|+...+.|..+..|.-+|.|++.+ .|+ ...|.|-.+
T Consensus 28 ~~~l~~g~~~~~~F~~~~~~~t~f~C~~~~---~~~~~~~~f~vy~~ 71 (110)
T PF05938_consen 28 WHVLKPGQSYSFSFRDNFFGTTLFWCHFRW---PGGKYHHSFDVYRS 71 (110)
T ss_pred CEECCCCCEEEEEEecCcCCceeEEEEEEE---CCccEEEEEEEEec
Confidence 456888999999999988899999999999 444 566666443
No 130
>PF08329 ChitinaseA_N: Chitinase A, N-terminal domain; InterPro: IPR013540 This domain is found in a number of bacterial chitinases and similar viral proteins. It is organised into a fibronectin III module domain-like fold, comprising only beta strands. Its function is not known, but it may be involved in interaction with the enzyme substrate, chitin [, ]. It is separated by a hinge region from the catalytic domain (IPR001223 from INTERPRO); this hinge region is probably mobile, allowing the N-terminal domain to have different relative positions in solution []. ; GO: 0004568 chitinase activity; PDB: 2WLY_A 1EDQ_A 2WM0_A 1X6N_A 1NH6_A 2WK2_A 1EHN_A 2WLZ_A 1EIB_A 1FFR_A ....
Probab=21.63 E-value=1.8e+02 Score=24.91 Aligned_cols=63 Identities=19% Similarity=0.198 Sum_probs=33.0
Q ss_pred eEEEcCcCCCCCCCCCCceeeEEEeCCCEE--EEEEEecCCCceEEEEEcCceEEEEEecCcccceeEe
Q 040938 108 AFTINGLPGPLYNCSAKDTFKLKVKPGKTY--LLRMINAALNDELFFSIANHTLTVVETDAVYVKPIKT 174 (487)
Q Consensus 108 ~~lvNG~~~~~~~~~~~~~~~~~v~~G~~~--rlR~iN~~~~~~~~~~i~~h~~~via~DG~~v~P~~~ 174 (487)
.++.||+..-.-.-.......|.++.|.+| +.+++|++. +.- + +..+..|-.+||.-+.|...
T Consensus 56 kly~dG~~V~tG~~~~~~~a~~~~~~gG~y~~~VeLCN~~G-CS~--S-~~~~V~VaDTDGsHl~pL~~ 120 (133)
T PF08329_consen 56 KLYFDGVLVWTGPSPQQKSATFTVTKGGRYQMQVELCNADG-CST--S-APVEVVVADTDGSHLAPLPY 120 (133)
T ss_dssp EEEETTEEEEEEE--SEEEEEEEE-S-EEEEEEEEEEETTE-EEE------EEEEEE-TTSTTS-----
T ss_pred EEEECCEEEEeCCCccCceEEEEecCCCEEEEEEEEECCCC-ccc--C-CCEEEEEeCCCccccccccC
Confidence 467777642000000123458999998877 577899986 322 2 25678899999999988643
No 131
>cd08067 MPN_2A_DUB Mov34/MPN/PAD-1 family: Histone H2A deubiquitinase. This family includes histone H2A deubiquitinase (Histone H2A DUB;MYSM1; myb-like, SWIRM and MPN domains 1; 2ADUB; 2A-DUB; KIAA19152ADUB, or KIAA1915/MYSM1), a member of JAMM/MPN+ deubiquitinases (DUBs), with possible Zn2+-dependent ubiquitin isopeptidase activity. It contains the SWIRM (Swi3p, Rsc8p and Moira), and SANT (SWI-SNF, ADA N-CoR, TFIIIB)/Myb domains; the SANT, but not the SWIRM, domain can bind directly to DNA. 2A-DUB is specific for monoubiquitinated H2A (uH2A), regulating transcription by coordinating histone acetylation and deubiquitination, and destabilizing the association of linker histone H1 with nucleosomes. 2A-DUB interacts with p/CAF (p300/CBP-associated factor) in a co-regulatory protein complex, where the status of acetylation of nucleosomal histones modulates its deubiquitinase activity. 2A-DUB is a positive regulator of androgen receptor (AR) transactivation activity on a reporter gene; it p
Probab=21.51 E-value=37 Score=31.02 Aligned_cols=8 Identities=25% Similarity=0.970 Sum_probs=6.5
Q ss_pred eecccccc
Q 040938 42 FWHAHISW 49 (487)
Q Consensus 42 wYH~H~~~ 49 (487)
|||||...
T Consensus 84 wYHSHP~~ 91 (187)
T cd08067 84 WYHSHPTF 91 (187)
T ss_pred EEecCCCC
Confidence 99999743
No 132
>PRK05461 apaG CO2+/MG2+ efflux protein ApaG; Reviewed
Probab=21.49 E-value=57 Score=27.79 Aligned_cols=20 Identities=25% Similarity=0.399 Sum_probs=13.6
Q ss_pred CCCCCCcccccCCCCCeEEEE
Q 040938 11 ADGPAYITQCPIQTGQSYVYN 31 (487)
Q Consensus 11 ~DGv~~vtq~~I~PG~~~~Y~ 31 (487)
-+||-|- |.-|.||++|.|.
T Consensus 66 G~GVVG~-qP~L~PGe~F~Y~ 85 (127)
T PRK05461 66 GEGVVGE-QPVLAPGESFEYT 85 (127)
T ss_pred CCceecC-CceECCCCCeEEe
Confidence 4667663 4557999987764
No 133
>MTH00023 COX2 cytochrome c oxidase subunit II; Validated
Probab=21.30 E-value=5.7e+02 Score=24.31 Aligned_cols=75 Identities=12% Similarity=0.318 Sum_probs=51.4
Q ss_pred ceEEEecCCCEEEEEEeeCCCCCCCCCCeeecCCceEEEEecCCCCCCCCCCCCCCCCCCCccceEEecCCcEEEEEEEc
Q 040938 362 TRAVALPFNASVEVVMQDTSIIGAESHPLHLHGFNFFVVGQGFGNFDPSKDPAKFNLVDPAERNTVGVPSGGWVAIRFLA 441 (487)
Q Consensus 362 ~~~~~v~~g~~v~~~l~n~~~~~~~~HP~HlHg~~f~Vl~~g~g~~~~~~~~~~~n~~~p~~rDtv~v~~~~~~~irf~~ 441 (487)
.+.+.++.|+.|++.+...+ -.|.|.+-.... .+|. -||-...+.|.+
T Consensus 150 ~n~lvlP~~~~v~~~~tS~D----ViHsf~iP~lgv-------------------------K~Da---iPG~~n~~~~~~ 197 (240)
T MTH00023 150 DNRLVVPINTHVRILVTGAD----VLHSFAVPSLGL-------------------------KIDA---VPGRLNQTGFFI 197 (240)
T ss_pred CceEEEecCCEEEEEEEcCC----cccceeecccCc-------------------------eeec---CCCcceeEEEEc
Confidence 34678999999999998753 567665543321 2333 367777889999
Q ss_pred CCCeeEEEeecchhhhhcc-ceEEEEEe
Q 040938 442 DNPGAWFMHCHLEVHTSWG-LKMAWIVN 468 (487)
Q Consensus 442 dnpG~w~~HCHi~~H~~~G-M~~~~~V~ 468 (487)
+.||.+.-.|.-.--.... |-..++|.
T Consensus 198 ~~~G~y~g~C~e~CG~~Hs~M~~~v~vv 225 (240)
T MTH00023 198 KRPGVFYGQCSEICGANHSFMPIVIEAV 225 (240)
T ss_pred CCCEEEEEEchhhcCcCccCCeEEEEEE
Confidence 9999999999876555433 44445444
No 134
>PF11611 DUF4352: Domain of unknown function (DUF4352); InterPro: IPR021652 This entry is represented by Bacteriophage A118, Gp32. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry represents a group of putative lipoproteins of unknown function.; PDB: 3CFU_A.
Probab=21.05 E-value=4.5e+02 Score=21.27 Aligned_cols=66 Identities=12% Similarity=0.126 Sum_probs=35.4
Q ss_pred EEEEEEecCCCceEEEEEcCceEEEEEecCcccceeEe--------eEEEeCCCceEEEEEEecCCCCCcceEEEec
Q 040938 137 YLLRMINAALNDELFFSIANHTLTVVETDAVYVKPIKT--------KVVLITPGQTTNVLLKAKHKSPNASFLIAAR 205 (487)
Q Consensus 137 ~rlR~iN~~~~~~~~~~i~~h~~~via~DG~~v~P~~~--------~~l~l~pG~R~dv~v~~~~~~~~g~~~i~~~ 205 (487)
+.+++.|.+... + .+....|.++..||...++... ..-.|.||+..+..+-+.-+.....|.|...
T Consensus 40 v~v~v~N~~~~~-~--~~~~~~f~l~d~~g~~~~~~~~~~~~~~~~~~~~i~pG~~~~g~l~F~vp~~~~~~~l~~~ 113 (123)
T PF11611_consen 40 VDVTVKNNGDEP-L--DFSPSDFKLYDSDGNKYDPDFSASSNDNDLFSETIKPGESVTGKLVFEVPKDDKPYTLEYS 113 (123)
T ss_dssp EEEEEEE-SSS--E--EEEGGGEEEE-TT--B--EEE-CCCTTTB--EEEE-TT-EEEEEEEEEESTT-GG-EEEE-
T ss_pred EEEEEEECCCCc-E--EecccceEEEeCCCCEEcccccchhccccccccEECCCCEEEEEEEEEECCCCccEEEEEe
Confidence 368999988644 3 3444589999999888765432 3578999998887777655442234666653
No 135
>PF07696 7TMR-DISMED2: 7TMR-DISM extracellular 2; InterPro: IPR011622 This entry represents one of two distinct types of extracellular domain found in the 7TM-DISM (7TM Receptors with Diverse Intracellular Signalling Modules) bacterial transmembrane proteins []. It is possible that this domain adopts a jelly roll fold and acts as a receptor for carbohydrates and their derivatives [].; PDB: 2XBZ_B 3JYB_A.
Probab=20.37 E-value=4.9e+02 Score=21.56 Aligned_cols=60 Identities=12% Similarity=0.248 Sum_probs=27.7
Q ss_pred CEEEEEEEecCCC-ceEEEEEc-----CceEEEEEecCcccc-------e---------eEeeEEEeCCCceEEEEEEec
Q 040938 135 KTYLLRMINAALN-DELFFSIA-----NHTLTVVETDAVYVK-------P---------IKTKVVLITPGQTTNVLLKAK 192 (487)
Q Consensus 135 ~~~rlR~iN~~~~-~~~~~~i~-----~h~~~via~DG~~v~-------P---------~~~~~l~l~pG~R~dv~v~~~ 192 (487)
-|.||+|-|.+.. ..+.|.++ ...+.++..+|...+ | ..+=.+.+.||+.+.+.++..
T Consensus 48 ~Wlr~~l~N~~~~~~~~~L~l~~~~ld~v~~y~~~~~~~~~~~~~G~~~~~~~r~~~~~~~~~~~~l~~~~~~~~yirv~ 127 (141)
T PF07696_consen 48 YWLRFTLQNPSSEQRRWVLELDNPYLDHVDLYLPDNGGLWRHYRSGDRRPFSQRPIPYRQPVFPLTLPPGETYTLYIRVK 127 (141)
T ss_dssp EEEEEEE------SS-EEEEEE-TT-SEEEEEEECTTCEEEEEEESTTS-S---SSTTTEEEEEE---SSS-EEEEEEEE
T ss_pred EEEEEEEEeecCCCccEEEEECCCCCCEEEEEEEcCCCEEEEEeccCCCCcccccccCCceEEEEEeCCCCEEEEEEEEE
Confidence 4779999887543 35667775 345666633332211 1 122245567777777777776
Q ss_pred CC
Q 040938 193 HK 194 (487)
Q Consensus 193 ~~ 194 (487)
..
T Consensus 128 s~ 129 (141)
T PF07696_consen 128 SN 129 (141)
T ss_dssp ES
T ss_pred cC
Confidence 54
No 136
>PRK03999 translation initiation factor IF-5A; Provisional
Probab=20.17 E-value=5.4e+02 Score=21.83 Aligned_cols=41 Identities=20% Similarity=0.156 Sum_probs=29.3
Q ss_pred CCCeEEEcCcCCCCCCCCCCceeeEE---EeCCC----EEEEEEEecCCCceEEEEEc
Q 040938 105 ISDAFTINGLPGPLYNCSAKDTFKLK---VKPGK----TYLLRMINAALNDELFFSIA 155 (487)
Q Consensus 105 ~~d~~lvNG~~~~~~~~~~~~~~~~~---v~~G~----~~rlR~iN~~~~~~~~~~i~ 155 (487)
.++.+.++|.+. -+++ ++||+ .+|+++.|.-+.+.+..++.
T Consensus 13 kG~~i~~~g~p~----------~V~~~~~~kpGkhg~a~vr~k~knL~tG~~~e~~~~ 60 (129)
T PRK03999 13 EGSYVVIDGEPC----------KIVEISKSKPGKHGSAKARIVAIGIFDGQKRSLVQP 60 (129)
T ss_pred CCCEEEECCEEE----------EEEEEEeecCCCCCcEEEEEEEEECCCCCEEEEEec
Confidence 357888899863 2233 46777 78999999987777766665
No 137
>PF11906 DUF3426: Protein of unknown function (DUF3426); InterPro: IPR021834 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 262 to 463 amino acids in length.
Probab=20.15 E-value=3.4e+02 Score=23.32 Aligned_cols=56 Identities=13% Similarity=0.122 Sum_probs=38.2
Q ss_pred EEEEEEecCCCceEEEEEcCceEEEEEecCccc-----ce------eEeeEEEeCCCceEEEEEEecCCC
Q 040938 137 YLLRMINAALNDELFFSIANHTLTVVETDAVYV-----KP------IKTKVVLITPGQTTNVLLKAKHKS 195 (487)
Q Consensus 137 ~rlR~iN~~~~~~~~~~i~~h~~~via~DG~~v-----~P------~~~~~l~l~pG~R~dv~v~~~~~~ 195 (487)
++..|.|.+... ..+...++++...+|..+ .| .....-.|.||++..+.+.+..++
T Consensus 72 v~g~i~N~~~~~---~~~P~l~l~L~D~~g~~l~~r~~~P~~yl~~~~~~~~~l~pg~~~~~~~~~~~p~ 138 (149)
T PF11906_consen 72 VSGTIRNRADFP---QALPALELSLLDAQGQPLARRVFTPADYLPPGLAAQAGLPPGESVPFRLRLEDPP 138 (149)
T ss_pred EEEEEEeCCCCc---ccCceEEEEEECCCCCEEEEEEEChHHhcccccccccccCCCCeEEEEEEeeCCC
Confidence 356788887643 344556777888888766 23 112255699999999999987654
Done!